locus-tag class description VA249_00010 PF00308 Bacterial dnaA protein VA249_00010 PF08299 Bacterial dnaA protein helix-turn-helix VA249_00010 PF11638 DnaA N-terminal domain VA249_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain VA249_00020 PF02767 DNA polymerase III beta subunit, central domain VA249_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain VA249_00030 PF02463 RecF/RecN/SMC N terminal domain VA249_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_00040 PF18053 DNA gyrase B subunit insert domain VA249_00040 PF01751 Toprim domain VA249_00040 PF00204 DNA gyrase B VA249_00040 PF00986 DNA gyrase B subunit, carboxyl terminus VA249_00050 PF00011 Hsp20/alpha crystallin family VA249_00060 PF00155 Aminotransferase class I and II VA249_00070 PF05746 DALR anticodon binding domain VA249_00070 PF02092 Glycyl-tRNA synthetase beta subunit VA249_00080 PF02091 Glycyl-tRNA synthetase alpha subunit VA249_00090 PF01169 Uncharacterized protein family UPF0016 VA249_00110 PF01206 Sulfurtransferase TusA VA249_00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_00130 PF03466 LysR substrate binding domain VA249_00140 PF00107 Zinc-binding dehydrogenase VA249_00140 PF08240 Alcohol dehydrogenase GroES-like domain VA249_00150 PF00108 Thiolase, N-terminal domain VA249_00150 PF02803 Thiolase, C-terminal domain VA249_00160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VA249_00160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VA249_00160 PF00378 Enoyl-CoA hydratase/isomerase VA249_00170 PF09186 Domain of unknown function (DUF1949) VA249_00170 PF01205 Uncharacterized protein family UPF0029 VA249_00180 PF02386 Cation transport protein VA249_00190 PF12724 Flavodoxin domain VA249_00200 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VA249_00210 PF13667 ThiC-associated domain VA249_00210 PF01964 Radical SAM ThiC family VA249_00220 PF02581 Thiamine monophosphate synthase VA249_00230 PF00899 ThiF family VA249_00240 PF02597 ThiS family VA249_00250 PF05690 Thiazole biosynthesis protein ThiG VA249_00260 PF06968 Biotin and Thiamin Synthesis associated domain VA249_00260 PF04055 Radical SAM superfamily VA249_00270 PF01321 Creatinase/Prolidase N-terminal domain VA249_00270 PF00557 Metallopeptidase family M24 VA249_00270 PF01321 Creatinase/Prolidase N-terminal domain VA249_00270 PF00557 Metallopeptidase family M24 VA249_00280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_00280 PF03466 LysR substrate binding domain VA249_00290 PF07690 Major Facilitator Superfamily VA249_00330 PF05114 Protein of unknown function (DUF692) VA249_00350 PF00580 UvrD/REP helicase N-terminal domain VA249_00350 PF13361 UvrD-like helicase C-terminal domain VA249_00370 PF01810 LysE type translocator VA249_00390 PF00892 EamA-like transporter family VA249_00400 PF00270 DEAD/DEAH box helicase VA249_00400 PF00271 Helicase conserved C-terminal domain VA249_00400 PF00570 HRDC domain VA249_00400 PF16124 RecQ zinc-binding VA249_00400 PF09382 RQC domain VA249_00420 PF02592 Putative vitamin uptake transporter VA249_00430 PF02541 Ppx/GppA phosphatase family VA249_00440 PF00271 Helicase conserved C-terminal domain VA249_00440 PF00270 DEAD/DEAH box helicase VA249_00450 PF00085 Thioredoxin VA249_00460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_00460 PF07498 Rho termination factor, N-terminal domain VA249_00460 PF07497 Rho termination factor, RNA-binding domain VA249_00480 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VA249_00490 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_00500 PF00175 Oxidoreductase NAD-binding domain VA249_00520 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VA249_00530 PF02602 Uroporphyrinogen-III synthase HemD VA249_00540 PF03900 Porphobilinogen deaminase, C-terminal domain VA249_00540 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VA249_00550 PF01295 Adenylate cyclase, class-I VA249_00550 PF12633 Adenylate cyclase NT domain VA249_00560 PF01491 Frataxin-like domain VA249_00570 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VA249_00570 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VA249_00580 PF01678 Diaminopimelate epimerase VA249_00600 PF02899 Phage integrase, N-terminal SAM-like domain VA249_00600 PF00589 Phage integrase family VA249_00610 PF13419 Haloacid dehalogenase-like hydrolase VA249_00620 PF03942 DTW domain VA249_00660 PF12146 Serine aminopeptidase, S33 VA249_00670 PF01810 LysE type translocator VA249_00680 PF01022 Bacterial regulatory protein, arsR family VA249_00690 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA249_00690 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA249_00740 PF10694 Protein of unknown function (DUF2500) VA249_00800 PF02881 SRP54-type protein, helical bundle domain VA249_00800 PF00448 SRP54-type protein, GTPase domain VA249_00810 PF00005 ABC transporter VA249_00820 PF18075 FtsX extracellular domain VA249_00830 PF00140 Sigma-70 factor, region 1.2 VA249_00830 PF04545 Sigma-70, region 4 VA249_00830 PF04542 Sigma-70 region 2 VA249_00850 PF00581 Rhodanese-like domain VA249_00860 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VA249_00860 PF01694 Rhomboid family VA249_00870 PF03748 Flagellar basal body-associated protein FliL VA249_00880 PF04345 Chorismate lyase VA249_00890 PF01040 UbiA prenyltransferase family VA249_00900 PF01553 Acyltransferase VA249_00910 PF01726 LexA DNA binding domain VA249_00910 PF00717 Peptidase S24-like VA249_00930 PF01554 MatE VA249_00940 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_00940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_00950 PF00440 Bacterial regulatory proteins, tetR family VA249_00970 PF05958 tRNA (Uracil-5-)-methyltransferase VA249_00980 PF00593 TonB dependent receptor VA249_00980 PF07715 TonB-dependent Receptor Plug Domain VA249_01000 PF01177 Asp/Glu/Hydantoin racemase VA249_01020 PF13356 Arm DNA-binding domain VA249_01020 PF00589 Phage integrase family VA249_01020 PF14659 Phage integrase, N-terminal SAM-like domain VA249_01100 PF00367 phosphotransferase system, EIIB VA249_01100 PF02378 Phosphotransferase system, EIIC VA249_01110 PF02056 Family 4 glycosyl hydrolase VA249_01110 PF11975 Family 4 glycosyl hydrolase C-terminal domain VA249_01120 PF00392 Bacterial regulatory proteins, gntR family VA249_01120 PF07702 UTRA domain VA249_01170 PF13091 PLD-like domain VA249_01190 PF01565 FAD binding domain VA249_01190 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VA249_01200 PF02237 Biotin protein ligase C terminal domain VA249_01200 PF03099 Biotin/lipoate A/B protein ligase family VA249_01200 PF08279 HTH domain VA249_01210 PF00485 Phosphoribulokinase / Uridine kinase family VA249_01220 PF00485 Phosphoribulokinase / Uridine kinase family VA249_01230 PF03143 Elongation factor Tu C-terminal domain VA249_01230 PF03144 Elongation factor Tu domain 2 VA249_01230 PF00009 Elongation factor Tu GTP binding domain VA249_01240 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VA249_01250 PF00467 KOW motif VA249_01250 PF02357 Transcription termination factor nusG VA249_01260 PF03946 Ribosomal protein L11, N-terminal domain VA249_01260 PF00298 Ribosomal protein L11, RNA binding domain VA249_01270 PF00687 Ribosomal protein L1p/L10e family VA249_01280 PF00466 Ribosomal protein L10 VA249_01290 PF00542 Ribosomal protein L7/L12 C-terminal domain VA249_01290 PF16320 Ribosomal protein L7/L12 dimerisation domain VA249_01300 PF04563 RNA polymerase beta subunit VA249_01300 PF04561 RNA polymerase Rpb2, domain 2 VA249_01300 PF04565 RNA polymerase Rpb2, domain 3 VA249_01300 PF10385 RNA polymerase beta subunit external 1 domain VA249_01300 PF00562 RNA polymerase Rpb2, domain 6 VA249_01300 PF04560 RNA polymerase Rpb2, domain 7 VA249_01310 PF04998 RNA polymerase Rpb1, domain 5 VA249_01310 PF05000 RNA polymerase Rpb1, domain 4 VA249_01310 PF04983 RNA polymerase Rpb1, domain 3 VA249_01310 PF04997 RNA polymerase Rpb1, domain 1 VA249_01310 PF00623 RNA polymerase Rpb1, domain 2 VA249_01320 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VA249_01330 PF09297 NADH pyrophosphatase zinc ribbon domain VA249_01330 PF00293 NUDIX domain VA249_01340 PF01208 Uroporphyrinogen decarboxylase (URO-D) VA249_01350 PF03167 Uracil DNA glycosylase superfamily VA249_01360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_01370 PF04222 Protein of unknown function (DUF416) VA249_01380 PF01595 Cyclin M transmembrane N-terminal domain VA249_01380 PF00571 CBS domain VA249_01390 PF00216 Bacterial DNA-binding protein VA249_01410 PF02844 Phosphoribosylglycinamide synthetase, N domain VA249_01410 PF02843 Phosphoribosylglycinamide synthetase, C domain VA249_01410 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VA249_01420 PF02844 Phosphoribosylglycinamide synthetase, N domain VA249_01420 PF02843 Phosphoribosylglycinamide synthetase, C domain VA249_01420 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VA249_01430 PF01808 AICARFT/IMPCHase bienzyme VA249_01430 PF02142 MGS-like domain VA249_01440 PF13411 MerR HTH family regulatory protein VA249_01450 PF18500 CadC C-terminal domain 1 VA249_01450 PF00486 Transcriptional regulatory protein, C terminal VA249_01460 PF13520 Amino acid permease VA249_01470 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VA249_01470 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VA249_01470 PF01276 Orn/Lys/Arg decarboxylase, major domain VA249_01490 PF08448 PAS fold VA249_01490 PF00990 Diguanylate cyclase, GGDEF domain VA249_01500 PF02954 Bacterial regulatory protein, Fis family VA249_01510 PF01207 Dihydrouridine synthase (Dus) VA249_01530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VA249_01530 PF02785 Biotin carboxylase C-terminal domain VA249_01530 PF00289 Biotin carboxylase, N-terminal domain VA249_01540 PF00364 Biotin-requiring enzyme VA249_01550 PF01220 Dehydroquinase class II VA249_01560 PF16177 Acetyl-coenzyme A synthetase N-terminus VA249_01560 PF00501 AMP-binding enzyme VA249_01560 PF13193 AMP-binding enzyme C-terminal domain VA249_01590 PF12832 MFS_1 like family VA249_01600 PF00672 HAMP domain VA249_01600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_01600 PF00512 His Kinase A (phospho-acceptor) domain VA249_01600 PF01627 Hpt domain VA249_01600 PF00072 Response regulator receiver domain VA249_01620 PF00474 Sodium:solute symporter family VA249_01640 PF01914 MarC family integral membrane protein VA249_01650 PF00072 Response regulator receiver domain VA249_01650 PF00196 Bacterial regulatory proteins, luxR family VA249_01660 PF02683 Cytochrome C biogenesis protein transmembrane region VA249_01660 PF11412 Disulphide bond corrector protein DsbC VA249_01670 PF03605 Anaerobic c4-dicarboxylate membrane transporter VA249_01680 PF00206 Lyase VA249_01680 PF10415 Fumarase C C-terminus VA249_01690 PF04186 FxsA cytoplasmic membrane protein VA249_01700 PF00588 SpoU rRNA Methylase family VA249_01710 PF00512 His Kinase A (phospho-acceptor) domain VA249_01710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_01710 PF00672 HAMP domain VA249_01710 PF16527 Two-component sensor protein CpxA, periplasmic domain VA249_01720 PF00486 Transcriptional regulatory protein, C terminal VA249_01720 PF00072 Response regulator receiver domain VA249_01730 PF07813 LTXXQ motif family protein VA249_01740 PF16916 Dimerisation domain of Zinc Transporter VA249_01740 PF01545 Cation efflux family VA249_01750 PF00365 Phosphofructokinase VA249_01760 PF01554 MatE VA249_01770 PF00166 Chaperonin 10 Kd subunit VA249_01780 PF00118 TCP-1/cpn60 chaperonin family VA249_01800 PF02308 MgtC family VA249_01810 PF04055 Radical SAM superfamily VA249_01820 PF01132 Elongation factor P (EF-P) OB domain VA249_01820 PF08207 Elongation factor P (EF-P) KOW-like domain VA249_01820 PF09285 Elongation factor P, C-terminal VA249_01830 PF02313 Fumarate reductase subunit D VA249_01840 PF02300 Fumarate reductase subunit C VA249_01850 PF13085 2Fe-2S iron-sulfur cluster binding domain VA249_01850 PF13183 4Fe-4S dicluster domain VA249_01860 PF00890 FAD binding domain VA249_01860 PF02910 Fumarate reductase flavoprotein C-term VA249_01870 PF00152 tRNA synthetases class II (D, K and N) VA249_01890 PF00440 Bacterial regulatory proteins, tetR family VA249_01890 PF08360 QacR-like protein, C-terminal region VA249_01910 PF01551 Peptidase family M23 VA249_01920 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_01920 PF06426 Serine acetyltransferase, N-terminal VA249_01930 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VA249_01930 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VA249_01940 PF02556 Preprotein translocase subunit SecB VA249_01950 PF00581 Rhodanese-like domain VA249_01960 PF01676 Metalloenzyme superfamily VA249_01960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VA249_01980 PF02743 Cache domain VA249_01980 PF00672 HAMP domain VA249_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_01990 PF00939 Sodium:sulfate symporter transmembrane region VA249_02010 PF02666 Phosphatidylserine decarboxylase VA249_02020 PF03193 RsgA GTPase VA249_02030 PF00929 Exonuclease VA249_02040 PF08331 Domain of unknown function (DUF1730) VA249_02050 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VA249_02060 PF01520 N-acetylmuramoyl-L-alanine amidase VA249_02070 PF01119 DNA mismatch repair protein, C-terminal domain VA249_02070 PF08676 MutL C terminal dimerisation domain VA249_02090 PF17209 Hfq protein VA249_02100 PF01926 50S ribosome-binding GTPase VA249_02100 PF13167 GTP-binding GTPase N-terminal VA249_02100 PF16360 GTP-binding GTPase Middle Region VA249_02110 PF12221 Bacterial membrane protein N terminal VA249_02110 PF01145 SPFH domain / Band 7 family VA249_02120 PF01145 SPFH domain / Band 7 family VA249_02130 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VA249_02140 PF00709 Adenylosuccinate synthetase VA249_02150 PF08238 Sel1 repeat VA249_02160 PF00175 Oxidoreductase NAD-binding domain VA249_02160 PF00042 Globin VA249_02160 PF00970 Oxidoreductase FAD-binding domain VA249_02170 PF02082 Transcriptional regulator VA249_02180 PF08461 Ribonuclease R winged-helix domain VA249_02180 PF08206 Ribonuclease B OB domain VA249_02180 PF00773 RNB domain VA249_02180 PF00575 S1 RNA binding domain VA249_02180 PF17876 Cold shock domain VA249_02190 PF00588 SpoU rRNA Methylase family VA249_02190 PF08032 RNA 2'-O ribose methyltransferase substrate binding VA249_02200 PF13419 Haloacid dehalogenase-like hydrolase VA249_02210 PF00579 tRNA synthetases class I (W and Y) VA249_02220 PF00117 Glutamine amidotransferase class-I VA249_02230 PF00202 Aminotransferase class-III VA249_02240 PF04958 Arginine N-succinyltransferase beta subunit VA249_02250 PF00171 Aldehyde dehydrogenase family VA249_02270 PF00027 Cyclic nucleotide-binding domain VA249_02270 PF13545 Crp-like helix-turn-helix domain VA249_02280 PF00485 Phosphoribulokinase / Uridine kinase family VA249_02290 PF06794 Uncharacterised protein family (UPF0270) VA249_02300 PF00561 alpha/beta hydrolase fold VA249_02320 PF00005 ABC transporter VA249_02320 PF12848 ABC transporter VA249_02330 PF02525 Flavodoxin-like fold VA249_02340 PF00999 Sodium/hydrogen exchanger family VA249_02340 PF02254 TrkA-N domain VA249_02350 PF02254 TrkA-N domain VA249_02350 PF00999 Sodium/hydrogen exchanger family VA249_02370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_02380 PF01112 Asparaginase VA249_02390 PF04102 SlyX VA249_02410 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA249_02410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_02420 PF08348 YheO-like PAS domain VA249_02420 PF13309 HTH domain VA249_02430 PF02635 DsrE/DsrF-like family VA249_02440 PF02635 DsrE/DsrF-like family VA249_02450 PF04077 DsrH like protein VA249_02460 PF00164 Ribosomal protein S12/S23 VA249_02470 PF00177 Ribosomal protein S7p/S5e VA249_02480 PF00679 Elongation factor G C-terminus VA249_02480 PF14492 Elongation Factor G, domain II VA249_02480 PF03764 Elongation factor G, domain IV VA249_02480 PF00009 Elongation factor Tu GTP binding domain VA249_02480 PF03144 Elongation factor Tu domain 2 VA249_02490 PF00009 Elongation factor Tu GTP binding domain VA249_02490 PF03144 Elongation factor Tu domain 2 VA249_02490 PF03143 Elongation factor Tu C-terminal domain VA249_02500 PF04324 BFD-like [2Fe-2S] binding domain VA249_02510 PF00210 Ferritin-like domain VA249_02520 PF00390 Malic enzyme, N-terminal domain VA249_02520 PF03949 Malic enzyme, NAD binding domain VA249_02530 PF01340 Met Apo-repressor, MetJ VA249_02540 PF01053 Cys/Met metabolism PLP-dependent enzyme VA249_02550 PF00696 Amino acid kinase family VA249_02550 PF00742 Homoserine dehydrogenase VA249_02550 PF03447 Homoserine dehydrogenase, NAD binding domain VA249_02560 PF02219 Methylenetetrahydrofolate reductase VA249_02580 PF00311 Phosphoenolpyruvate carboxylase VA249_02590 PF07687 Peptidase dimerisation domain VA249_02590 PF01546 Peptidase family M20/M25/M40 VA249_02600 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_02600 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA249_02610 PF00696 Amino acid kinase family VA249_02620 PF00764 Arginosuccinate synthase VA249_02630 PF00583 Acetyltransferase (GNAT) family VA249_02630 PF14698 Argininosuccinate lyase C-terminal VA249_02630 PF00206 Lyase VA249_02640 PF08534 Redoxin VA249_02640 PF00462 Glutaredoxin VA249_02650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_02650 PF03466 LysR substrate binding domain VA249_02660 PF17092 Penicillin-binding protein OB-like domain VA249_02660 PF00912 Transglycosylase VA249_02660 PF00905 Penicillin binding protein transpeptidase domain VA249_02710 PF07660 Secretin and TonB N terminus short domain VA249_02710 PF11741 AMIN domain VA249_02710 PF00263 Bacterial type II and III secretion system protein VA249_02710 PF03958 Bacterial type II/III secretion system short domain VA249_02720 PF01202 Shikimate kinase VA249_02730 PF01761 3-dehydroquinate synthase VA249_02750 PF02086 D12 class N6 adenine-specific DNA methyltransferase VA249_02760 PF00834 Ribulose-phosphate 3 epimerase family VA249_02770 PF01250 Ribosomal protein S6 VA249_02780 PF00436 Single-strand binding protein family VA249_02790 PF01084 Ribosomal protein S18 VA249_02800 PF03948 Ribosomal protein L9, C-terminal domain VA249_02800 PF01281 Ribosomal protein L9, N-terminal domain VA249_02820 PF03796 DnaB-like helicase C terminal domain VA249_02820 PF00772 DnaB-like helicase N terminal domain VA249_02830 PF00842 Alanine racemase, C-terminal domain VA249_02830 PF01168 Alanine racemase, N-terminal domain VA249_02850 PF01894 Uncharacterised protein family UPF0047 VA249_02860 PF00342 Phosphoglucose isomerase VA249_02880 PF01475 Ferric uptake regulator family VA249_02890 PF01207 Dihydrouridine synthase (Dus) VA249_02930 PF00667 FAD binding domain VA249_02930 PF00175 Oxidoreductase NAD-binding domain VA249_02930 PF00258 Flavodoxin VA249_02940 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA249_02940 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA249_02950 PF01507 Phosphoadenosine phosphosulfate reductase family VA249_02960 PF13358 DDE superfamily endonuclease VA249_02980 PF00999 Sodium/hydrogen exchanger family VA249_02990 PF02607 B12 binding domain VA249_02990 PF02965 Vitamin B12 dependent methionine synthase, activation domain VA249_02990 PF00809 Pterin binding enzyme VA249_02990 PF02310 B12 binding domain VA249_02990 PF02574 Homocysteine S-methyltransferase VA249_03000 PF00696 Amino acid kinase family VA249_03000 PF01842 ACT domain VA249_03010 PF00266 Aminotransferase class-V VA249_03030 PF17760 UvrA interaction domain VA249_03030 PF17755 UvrA DNA-binding domain VA249_03030 PF00005 ABC transporter VA249_03040 PF00483 Nucleotidyl transferase VA249_03050 PF00196 Bacterial regulatory proteins, luxR family VA249_03060 PF00436 Single-strand binding protein family VA249_03070 PF00563 EAL domain VA249_03070 PF17157 Gammaproteobacterial periplasmic sensor domain VA249_03070 PF00990 Diguanylate cyclase, GGDEF domain VA249_03110 PF00263 Bacterial type II and III secretion system protein VA249_03110 PF03958 Bacterial type II/III secretion system short domain VA249_03120 PF13401 AAA domain VA249_03120 PF01471 Putative peptidoglycan binding domain VA249_03140 PF00437 Type II/IV secretion system protein VA249_03140 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VA249_03160 PF00482 Type II secretion system (T2SS), protein F VA249_03180 PF07963 Prokaryotic N-terminal methylation motif VA249_03180 PF00114 Pilin (bacterial filament) VA249_03260 PF04085 rod shape-determining protein MreC VA249_03270 PF04093 rod shape-determining protein MreD VA249_03280 PF02545 Maf-like protein VA249_03290 PF00575 S1 RNA binding domain VA249_03290 PF10150 Ribonuclease E/G family VA249_03300 PF13502 AsmA-like C-terminal region VA249_03300 PF13116 Protein of unknown function VA249_03310 PF00795 Carbon-nitrogen hydrolase VA249_03320 PF01523 Putative modulator of DNA gyrase VA249_03330 PF02562 PhoH-like protein VA249_03330 PF13638 PIN domain VA249_03340 PF00271 Helicase conserved C-terminal domain VA249_03340 PF12137 RNA polymerase recycling family C-terminal VA249_03340 PF00176 SNF2 family N-terminal domain VA249_03340 PF18339 RapA N-terminal Tudor like domain 1 VA249_03340 PF18337 RapA N-terminal Tudor like domain VA249_03350 PF00849 RNA pseudouridylate synthase VA249_03360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_03360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA249_03370 PF04751 Protein of unknown function (DUF615) VA249_03380 PF01523 Putative modulator of DNA gyrase VA249_03390 PF00571 CBS domain VA249_03390 PF01769 Divalent cation transporter VA249_03390 PF03448 MgtE intracellular N domain VA249_03400 PF00381 PTS HPr component phosphorylation site VA249_03410 PF03668 P-loop ATPase protein family VA249_03420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA249_03430 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VA249_03440 PF04552 Sigma-54, DNA binding domain VA249_03440 PF04963 Sigma-54 factor, core binding domain VA249_03440 PF00309 Sigma-54 factor, Activator interacting domain (AID) VA249_03450 PF12399 Branched-chain amino acid ATP-binding cassette transporter VA249_03450 PF00005 ABC transporter VA249_03460 PF03968 OstA-like protein VA249_03480 PF01380 SIS domain VA249_03480 PF00571 CBS domain VA249_03490 PF01699 Sodium/calcium exchanger protein VA249_03500 PF00005 ABC transporter VA249_03510 PF02405 Permease MlaE VA249_03520 PF02470 MlaD protein VA249_03530 PF05494 MlaC protein VA249_03550 PF01722 BolA-like protein VA249_03560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VA249_03570 PF01553 Acyltransferase VA249_03580 PF01042 Endoribonuclease L-PSP VA249_03590 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VA249_03590 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VA249_03600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VA249_03600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VA249_03610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VA249_03610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VA249_03630 PF06877 Regulator of ribonuclease activity B VA249_03650 PF00583 Acetyltransferase (GNAT) family VA249_03670 PF08264 Anticodon-binding domain of tRNA VA249_03670 PF00133 tRNA synthetases class I (I, L, M and V) VA249_03670 PF10458 Valyl tRNA synthetase tRNA binding arm VA249_03680 PF04364 DNA polymerase III chi subunit, HolC VA249_03690 PF00883 Cytosol aminopeptidase family, catalytic domain VA249_03690 PF02789 Cytosol aminopeptidase family, N-terminal domain VA249_03700 PF03739 Lipopolysaccharide export system permease LptF/LptG VA249_03710 PF03739 Lipopolysaccharide export system permease LptF/LptG VA249_03750 PF00583 Acetyltransferase (GNAT) family VA249_03750 PF00795 Carbon-nitrogen hydrolase VA249_03760 PF00072 Response regulator receiver domain VA249_03770 PF00171 Aldehyde dehydrogenase family VA249_03780 PF00672 HAMP domain VA249_03780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_03780 PF17200 Single Cache domain 2 VA249_03790 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VA249_03790 PF01464 Transglycosylase SLT domain VA249_03800 PF04362 Bacterial Fe(2+) trafficking VA249_03810 PF00633 Helix-hairpin-helix motif VA249_03810 PF00730 HhH-GPD superfamily base excision DNA repair protein VA249_03810 PF14815 NUDIX domain VA249_03820 PF02390 Putative methyltransferase VA249_03830 PF02086 D12 class N6 adenine-specific DNA methyltransferase VA249_03840 PF04960 Glutaminase VA249_03850 PF04055 Radical SAM superfamily VA249_03850 PF06969 HemN C-terminal domain VA249_03860 PF01725 Ham1 family VA249_03880 PF02594 Uncharacterised ACR, YggU family COG1872 VA249_03890 PF02325 YGGT family VA249_03900 PF03807 NADP oxidoreductase coenzyme F420-dependent VA249_03900 PF14748 Pyrroline-5-carboxylate reductase dimerisation VA249_03910 PF01168 Alanine racemase, N-terminal domain VA249_03920 PF00437 Type II/IV secretion system protein VA249_03930 PF00437 Type II/IV secretion system protein VA249_03940 PF03652 Holliday junction resolvase VA249_03950 PF02622 Uncharacterized ACR, COG1678 VA249_03960 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VA249_03960 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VA249_03970 PF04452 RNA methyltransferase VA249_03980 PF04231 Endonuclease I VA249_03990 PF10263 SprT-like family VA249_03990 PF17283 SprT-like zinc ribbon domain VA249_04010 PF02772 S-adenosylmethionine synthetase, central domain VA249_04010 PF00438 S-adenosylmethionine synthetase, N-terminal domain VA249_04010 PF02773 S-adenosylmethionine synthetase, C-terminal domain VA249_04020 PF02780 Transketolase, C-terminal domain VA249_04020 PF00456 Transketolase, thiamine diphosphate binding domain VA249_04020 PF02779 Transketolase, pyrimidine binding domain VA249_04040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA249_04040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA249_04050 PF00162 Phosphoglycerate kinase VA249_04060 PF01116 Fructose-bisphosphate aldolase class-II VA249_04080 PF00924 Mechanosensitive ion channel VA249_04080 PF05552 Conserved TM helix VA249_04100 PF01810 LysE type translocator VA249_04110 PF03466 LysR substrate binding domain VA249_04110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_04120 PF04402 Protein of unknown function (DUF541) VA249_04130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA249_04130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_04130 PF01842 ACT domain VA249_04140 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VA249_04150 PF01812 5-formyltetrahydrofolate cyclo-ligase family VA249_04160 PF05164 Cell division protein ZapA VA249_04170 PF03695 Uncharacterised protein family (UPF0149) VA249_04180 PF01494 FAD binding domain VA249_04190 PF01494 FAD binding domain VA249_04230 PF03937 Flavinator of succinate dehydrogenase VA249_04240 PF00890 FAD binding domain VA249_04240 PF02910 Fumarate reductase flavoprotein C-term VA249_04250 PF04542 Sigma-70 region 2 VA249_04250 PF08281 Sigma-70, region 4 VA249_04260 PF03873 Anti sigma-E protein RseA, C-terminal domain VA249_04260 PF03872 Anti sigma-E protein RseA, N-terminal domain VA249_04270 PF03888 MucB/RseB N-terminal domain VA249_04270 PF17188 MucB/RseB C-terminal domain VA249_04290 PF00679 Elongation factor G C-terminus VA249_04290 PF00009 Elongation factor Tu GTP binding domain VA249_04290 PF03144 Elongation factor Tu domain 2 VA249_04290 PF06421 GTP-binding protein LepA C-terminus VA249_04300 PF10502 Signal peptidase, peptidase S26 VA249_04310 PF00035 Double-stranded RNA binding motif VA249_04310 PF14622 Ribonuclease-III-like VA249_04320 PF01926 50S ribosome-binding GTPase VA249_04320 PF07650 KH domain VA249_04330 PF02565 Recombination protein O C terminal VA249_04330 PF11967 Recombination protein O N terminal VA249_04340 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VA249_04350 PF01648 4'-phosphopantetheinyl transferase superfamily VA249_04360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_04360 PF00512 His Kinase A (phospho-acceptor) domain VA249_04360 PF01627 Hpt domain VA249_04360 PF00072 Response regulator receiver domain VA249_04360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VA249_04360 PF00672 HAMP domain VA249_04370 PF01938 TRAM domain VA249_04370 PF05958 tRNA (Uracil-5-)-methyltransferase VA249_04380 PF13291 ACT domain VA249_04380 PF04607 Region found in RelA / SpoT proteins VA249_04380 PF02824 TGS domain VA249_04390 PF03819 MazG nucleotide pyrophosphohydrolase domain VA249_04400 PF00117 Glutamine amidotransferase class-I VA249_04400 PF06418 CTP synthase N-terminus VA249_04410 PF03952 Enolase, N-terminal domain VA249_04410 PF00113 Enolase, C-terminal TIM barrel domain VA249_04420 PF04977 Septum formation initiator VA249_04430 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VA249_04440 PF02542 YgbB family VA249_04450 PF01142 tRNA pseudouridine synthase D (TruD) VA249_04460 PF01975 Survival protein SurE VA249_04480 PF01476 LysM domain VA249_04480 PF01551 Peptidase family M23 VA249_04490 PF00140 Sigma-70 factor, region 1.2 VA249_04490 PF04542 Sigma-70 region 2 VA249_04490 PF04545 Sigma-70, region 4 VA249_04490 PF04539 Sigma-70 region 3 VA249_04500 PF01624 MutS domain I VA249_04500 PF05190 MutS family domain IV VA249_04500 PF00488 MutS domain V VA249_04500 PF05188 MutS domain II VA249_04500 PF05192 MutS domain III VA249_04510 PF02464 Competence-damaged protein VA249_04520 PF00154 recA bacterial DNA recombination protein VA249_04530 PF02631 RecX family VA249_04540 PF02272 DHHA1 domain VA249_04540 PF01411 tRNA synthetases class II (A) VA249_04540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VA249_04550 PF01842 ACT domain VA249_04550 PF00696 Amino acid kinase family VA249_04550 PF13840 ACT domain VA249_04560 PF02599 Global regulator protein family VA249_04620 PF00196 Bacterial regulatory proteins, luxR family VA249_04630 PF04277 Oxaloacetate decarboxylase, gamma chain VA249_04640 PF00364 Biotin-requiring enzyme VA249_04640 PF00682 HMGL-like VA249_04640 PF02436 Conserved carboxylase domain VA249_04650 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VA249_04660 PF08240 Alcohol dehydrogenase GroES-like domain VA249_04660 PF00107 Zinc-binding dehydrogenase VA249_04670 PF09335 SNARE associated Golgi protein VA249_04680 PF05193 Peptidase M16 inactive domain VA249_04680 PF00675 Insulinase (Peptidase family M16) VA249_04690 PF04262 Glutamate-cysteine ligase VA249_04710 PF02664 S-Ribosylhomocysteinase (LuxS) VA249_04720 PF03471 Transporter associated domain VA249_04720 PF01595 Cyclin M transmembrane N-terminal domain VA249_04720 PF00571 CBS domain VA249_04730 PF01578 Cytochrome C assembly protein VA249_04740 PF02978 Signal peptide binding domain VA249_04740 PF02881 SRP54-type protein, helical bundle domain VA249_04740 PF00448 SRP54-type protein, GTPase domain VA249_04750 PF00886 Ribosomal protein S16 VA249_04760 PF01782 RimM N-terminal domain VA249_04760 PF05239 PRC-barrel domain VA249_04770 PF01746 tRNA (Guanine-1)-methyltransferase VA249_04780 PF01245 Ribosomal protein L19 VA249_04790 PF03884 DNA gyrase inhibitor YacG VA249_04800 PF07072 Cell division protein VA249_04810 PF01121 Dephospho-CoA kinase VA249_04820 PF06750 Bacterial Peptidase A24 N-terminal domain VA249_04820 PF01478 Type IV leader peptidase family VA249_04830 PF00482 Type II secretion system (T2SS), protein F VA249_04840 PF00437 Type II/IV secretion system protein VA249_04840 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VA249_04850 PF00114 Pilin (bacterial filament) VA249_04850 PF07963 Prokaryotic N-terminal methylation motif VA249_04860 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VA249_04860 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VA249_04870 PF01510 N-acetylmuramoyl-L-alanine amidase VA249_04880 PF00392 Bacterial regulatory proteins, gntR family VA249_04880 PF07729 FCD domain VA249_04890 PF00456 Transketolase, thiamine diphosphate binding domain VA249_04890 PF17831 Pyruvate dehydrogenase E1 component middle domain VA249_04900 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA249_04900 PF02817 e3 binding domain VA249_04900 PF00364 Biotin-requiring enzyme VA249_04910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_04910 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_04920 PF00440 Bacterial regulatory proteins, tetR family VA249_04930 PF00156 Phosphoribosyl transferase domain VA249_04940 PF00484 Carbonic anhydrase VA249_04950 PF00916 Sulfate permease family VA249_04950 PF01740 STAS domain VA249_04960 PF00005 ABC transporter VA249_04970 PF01061 ABC-2 type transporter VA249_04980 PF02569 Pantoate-beta-alanine ligase VA249_04990 PF02548 Ketopantoate hydroxymethyltransferase VA249_05000 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VA249_05010 PF12626 Polymerase A arginine-rich C-terminus VA249_05010 PF01743 Poly A polymerase head domain VA249_05010 PF12627 Probable RNA and SrmB- binding site of polymerase A VA249_05020 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA249_05030 PF01258 Prokaryotic dksA/traR C4-type zinc finger VA249_05040 PF17746 SfsA N-terminal OB domain VA249_05040 PF03749 Sugar fermentation stimulation protein RE domain VA249_05050 PF00271 Helicase conserved C-terminal domain VA249_05050 PF04408 Helicase associated domain (HA2) VA249_05050 PF00270 DEAD/DEAH box helicase VA249_05050 PF08482 ATP-dependent helicase C-terminal VA249_05060 PF00905 Penicillin binding protein transpeptidase domain VA249_05060 PF14814 Bifunctional transglycosylase second domain VA249_05060 PF00912 Transglycosylase VA249_05070 PF01734 Patatin-like phospholipase VA249_05080 PF06434 Aconitate hydratase 2 N-terminus VA249_05080 PF00330 Aconitase family (aconitate hydratase) VA249_05080 PF11791 Aconitate B N-terminal domain VA249_05090 PF11791 Aconitate B N-terminal domain VA249_05090 PF06434 Aconitate hydratase 2 N-terminus VA249_05090 PF00330 Aconitase family (aconitate hydratase) VA249_05100 PF02595 Glycerate kinase family VA249_05110 PF02447 GntP family permease VA249_05120 PF13556 PucR C-terminal helix-turn-helix domain VA249_05120 PF17853 GGDEF-like domain VA249_05120 PF05651 Putative sugar diacid recognition VA249_05130 PF06062 Uncharacterised protein family (UPF0231) VA249_05140 PF00543 Nitrogen regulatory protein P-II VA249_05150 PF00909 Ammonium Transporter Family VA249_05160 PF13416 Bacterial extracellular solute-binding protein VA249_05180 PF08402 TOBE domain VA249_05180 PF00005 ABC transporter VA249_05190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA249_05190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA249_05190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA249_05190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA249_05200 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VA249_05200 PF06165 Glycosyltransferase family 36 VA249_05210 PF02838 Glycosyl hydrolase family 20, domain 2 VA249_05210 PF00728 Glycosyl hydrolase family 20, catalytic domain VA249_05220 PF01869 BadF/BadG/BcrA/BcrD ATPase family VA249_05240 PF00005 ABC transporter VA249_05240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_05250 PF00005 ABC transporter VA249_05250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_05260 PF00528 Binding-protein-dependent transport system inner membrane component VA249_05260 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_05270 PF00528 Binding-protein-dependent transport system inner membrane component VA249_05280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_05290 PF09308 LuxQ, periplasmic VA249_05290 PF00072 Response regulator receiver domain VA249_05290 PF00512 His Kinase A (phospho-acceptor) domain VA249_05290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_05300 PF05175 Methyltransferase small domain VA249_05300 PF08468 Methyltransferase small domain N-terminal VA249_05310 PF01594 AI-2E family transporter VA249_05320 PF00202 Aminotransferase class-III VA249_05330 PF01521 Iron-sulphur cluster biosynthesis VA249_05340 PF13533 Biotin-lipoyl like VA249_05350 PF00873 AcrB/AcrD/AcrF family VA249_05360 PF01476 LysM domain VA249_05360 PF08525 Opacity-associated protein A N-terminal motif VA249_05360 PF01551 Peptidase family M23 VA249_05370 PF00579 tRNA synthetases class I (W and Y) VA249_05390 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VA249_05400 PF13609 Gram-negative porin VA249_05410 PF03449 Transcription elongation factor, N-terminal VA249_05410 PF01272 Transcription elongation factor, GreA/GreB, C-term VA249_05420 PF01985 CRS1 / YhbY (CRM) domain VA249_05430 PF01728 FtsJ-like methyltransferase VA249_05440 PF01434 Peptidase family M41 VA249_05440 PF06480 FtsH Extracellular VA249_05440 PF00004 ATPase family associated with various cellular activities (AAA) VA249_05440 PF17862 AAA+ lid domain VA249_05450 PF00809 Pterin binding enzyme VA249_05460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA249_05460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA249_05460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA249_05460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA249_05470 PF03840 Preprotein translocase SecG subunit VA249_05480 PF17384 RimP C-terminal SH3 domain VA249_05480 PF02576 RimP N-terminal domain VA249_05490 PF00575 S1 RNA binding domain VA249_05490 PF08529 NusA N-terminal domain VA249_05490 PF13184 NusA-like KH domain VA249_05500 PF00009 Elongation factor Tu GTP binding domain VA249_05500 PF11987 Translation-initiation factor 2 VA249_05500 PF08364 Bacterial translation initiation factor IF-2 associated region VA249_05500 PF04760 Translation initiation factor IF-2, N-terminal region VA249_05510 PF02033 Ribosome-binding factor A VA249_05520 PF09157 Pseudouridine synthase II TruB, C-terminal VA249_05520 PF16198 tRNA pseudouridylate synthase B C-terminal domain VA249_05520 PF01509 TruB family pseudouridylate synthase (N terminal domain) VA249_05530 PF00312 Ribosomal protein S15 VA249_05540 PF03725 3' exoribonuclease family, domain 2 VA249_05540 PF01138 3' exoribonuclease family, domain 1 VA249_05540 PF00575 S1 RNA binding domain VA249_05540 PF00013 KH domain VA249_05540 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VA249_05550 PF13181 Tetratricopeptide repeat VA249_05550 PF07719 Tetratricopeptide repeat VA249_05560 PF01047 MarR family VA249_05570 PF01554 MatE VA249_05580 PF01136 Peptidase family U32 VA249_05590 PF01136 Peptidase family U32 VA249_05600 PF03707 Bacterial signalling protein N terminal repeat VA249_05600 PF00990 Diguanylate cyclase, GGDEF domain VA249_05600 PF00563 EAL domain VA249_05610 PF02036 SCP-2 sterol transfer family VA249_05620 PF13508 Acetyltransferase (GNAT) domain VA249_05660 PF00009 Elongation factor Tu GTP binding domain VA249_05660 PF03144 Elongation factor Tu domain 2 VA249_05660 PF16658 Class II release factor RF3, C-terminal domain VA249_05680 PF01026 TatD related DNase VA249_05690 PF07670 Nucleoside recognition VA249_05690 PF07662 Na+ dependent nucleoside transporter C-terminus VA249_05690 PF01773 Na+ dependent nucleoside transporter N-terminus VA249_05700 PF01791 DeoC/LacD family aldolase VA249_05710 PF02885 Glycosyl transferase family, helical bundle domain VA249_05710 PF00591 Glycosyl transferase family, a/b domain VA249_05710 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VA249_05720 PF01676 Metalloenzyme superfamily VA249_05730 PF01048 Phosphorylase superfamily VA249_05750 PF18429 Domain of unknown function (DUF5609) VA249_05770 PF18073 Rubredoxin metal binding domain VA249_05780 PF00679 Elongation factor G C-terminus VA249_05780 PF03144 Elongation factor Tu domain 2 VA249_05780 PF00009 Elongation factor Tu GTP binding domain VA249_05780 PF03764 Elongation factor G, domain IV VA249_05780 PF14492 Elongation Factor G, domain II VA249_05790 PF00501 AMP-binding enzyme VA249_05810 PF03466 LysR substrate binding domain VA249_05810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_05820 PF00356 Bacterial regulatory proteins, lacI family VA249_05830 PF16363 GDP-mannose 4,6 dehydratase VA249_05840 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VA249_05840 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VA249_05850 PF08544 GHMP kinases C terminal VA249_05850 PF00288 GHMP kinases N terminal domain VA249_05850 PF10509 Galactokinase galactose-binding signature VA249_05860 PF01263 Aldose 1-epimerase VA249_05870 PF00356 Bacterial regulatory proteins, lacI family VA249_05900 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VA249_05900 PF01464 Transglycosylase SLT domain VA249_05910 PF01266 FAD dependent oxidoreductase VA249_05910 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VA249_05920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA249_05920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA249_05930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA249_05930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA249_05950 PF00266 Aminotransferase class-V VA249_05960 PF05899 Protein of unknown function (DUF861) VA249_05960 PF07883 Cupin domain VA249_05970 PF00696 Amino acid kinase family VA249_05980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_05980 PF03466 LysR substrate binding domain VA249_05990 PF02629 CoA binding domain VA249_05990 PF00549 CoA-ligase VA249_06000 PF06545 Protein of unknown function (DUF1116) VA249_06010 PF11392 Protein of unknown function (DUF2877) VA249_06020 PF02615 Malate/L-lactate dehydrogenase VA249_06030 PF01546 Peptidase family M20/M25/M40 VA249_06050 PF00375 Sodium:dicarboxylate symporter family VA249_06060 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VA249_06070 PF01979 Amidohydrolase family VA249_06080 PF04115 Ureidoglycolate lyase VA249_06090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA249_06090 PF00205 Thiamine pyrophosphate enzyme, central domain VA249_06090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_06100 PF01261 Xylose isomerase-like TIM barrel VA249_06110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_06110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_06120 PF02595 Glycerate kinase family VA249_06130 PF14602 Hexapeptide repeat of succinyl-transferase VA249_06130 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VA249_06160 PF07130 YebG protein VA249_06170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_06170 PF03466 LysR substrate binding domain VA249_06190 PF17946 RecC C-terminal domain VA249_06200 PF00580 UvrD/REP helicase N-terminal domain VA249_06200 PF12705 PD-(D/E)XK nuclease superfamily VA249_06200 PF13361 UvrD-like helicase C-terminal domain VA249_06210 PF13538 UvrD-like helicase C-terminal domain VA249_06220 PF00696 Amino acid kinase family VA249_06220 PF00583 Acetyltransferase (GNAT) family VA249_06240 PF03562 MltA specific insert domain VA249_06240 PF06725 3D domain VA249_06250 PF00899 ThiF family VA249_06260 PF02657 Fe-S metabolism associated domain VA249_06270 PF00266 Aminotransferase class-V VA249_06280 PF01965 DJ-1/PfpI family VA249_06290 PF02558 Ketopantoate reductase PanE/ApbA VA249_06290 PF08546 Ketopantoate reductase PanE/ApbA C terminal VA249_06300 PF03502 Nucleoside-specific channel-forming protein, Tsx VA249_06330 PF04542 Sigma-70 region 2 VA249_06330 PF04545 Sigma-70, region 4 VA249_06370 PF07690 Major Facilitator Superfamily VA249_06380 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA249_06400 PF05175 Methyltransferase small domain VA249_06410 PF01722 BolA-like protein VA249_06420 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VA249_06420 PF11973 NQRA C-terminal domain VA249_06430 PF03116 NQR2, RnfD, RnfE family VA249_06440 PF04205 FMN-binding domain VA249_06450 PF02508 Rnf-Nqr subunit, membrane protein VA249_06460 PF02508 Rnf-Nqr subunit, membrane protein VA249_06470 PF00970 Oxidoreductase FAD-binding domain VA249_06470 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_06470 PF00175 Oxidoreductase NAD-binding domain VA249_06480 PF02424 ApbE family VA249_06500 PF00990 Diguanylate cyclase, GGDEF domain VA249_06500 PF00072 Response regulator receiver domain VA249_06510 PF02743 Cache domain VA249_06510 PF00672 HAMP domain VA249_06510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_06520 PF00817 impB/mucB/samB family VA249_06520 PF11799 impB/mucB/samB family C-terminal domain VA249_06520 PF11798 IMS family HHH motif VA249_06530 PF16124 RecQ zinc-binding VA249_06530 PF09382 RQC domain VA249_06530 PF00271 Helicase conserved C-terminal domain VA249_06530 PF00270 DEAD/DEAH box helicase VA249_06530 PF00570 HRDC domain VA249_06540 PF01272 Transcription elongation factor, GreA/GreB, C-term VA249_06540 PF03449 Transcription elongation factor, N-terminal VA249_06560 PF00209 Sodium:neurotransmitter symporter family VA249_06580 PF06786 Uncharacterised protein family (UPF0253) VA249_06600 PF04073 Aminoacyl-tRNA editing domain VA249_06600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA249_06600 PF03129 Anticodon binding domain VA249_06610 PF18389 TrmO C-terminal domain VA249_06610 PF01980 tRNA-methyltransferase O VA249_06620 PF03806 AbgT putative transporter family VA249_06630 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VA249_06670 PF04287 tRNA pseudouridine synthase C VA249_06680 PF00849 RNA pseudouridylate synthase VA249_06690 PF11944 Protein of unknown function (DUF3461) VA249_06700 PF08335 GlnD PII-uridylyltransferase VA249_06700 PF01842 ACT domain VA249_06700 PF01966 HD domain VA249_06700 PF01909 Nucleotidyltransferase domain VA249_06710 PF00557 Metallopeptidase family M24 VA249_06720 PF00318 Ribosomal protein S2 VA249_06730 PF00889 Elongation factor TS VA249_06740 PF00696 Amino acid kinase family VA249_06750 PF01765 Ribosome recycling factor VA249_06760 PF01255 Putative undecaprenyl diphosphate synthase VA249_06780 PF13288 DXP reductoisomerase C-terminal domain VA249_06780 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VA249_06780 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VA249_06790 PF02163 Peptidase family M50 VA249_06790 PF17820 PDZ domain VA249_06800 PF01103 Surface antigen VA249_06800 PF07244 Surface antigen variable number repeat VA249_06810 PF03938 Outer membrane protein (OmpH-like) VA249_06820 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_06820 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VA249_06830 PF07977 FabA-like domain VA249_06840 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_06840 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VA249_06850 PF02684 Lipid-A-disaccharide synthetase VA249_06860 PF01351 Ribonuclease HII VA249_06870 PF01336 OB-fold nucleic acid binding domain VA249_06870 PF02811 PHP domain VA249_06870 PF14579 Helix-hairpin-helix motif VA249_06870 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_06870 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_06880 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VA249_06890 PF01171 PP-loop family VA249_06890 PF09179 TilS substrate binding domain VA249_06890 PF11734 TilS substrate C-terminal domain VA249_06900 PF00034 Cytochrome c VA249_06910 PF00543 Nitrogen regulatory protein P-II VA249_06940 PF01464 Transglycosylase SLT domain VA249_06940 PF01476 LysM domain VA249_06950 PF16123 Hydroxyacylglutathione hydrolase C-terminus VA249_06950 PF00753 Metallo-beta-lactamase superfamily VA249_06960 PF08241 Methyltransferase domain VA249_06970 PF00075 RNase H VA249_06980 PF00929 Exonuclease VA249_07010 PF09317 Domain of unknown function (DUF1974) VA249_07010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_07010 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_07010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_07020 PF13580 SIS domain VA249_07030 PF13230 Glutamine amidotransferases class-II VA249_07050 PF00551 Formyl transferase VA249_07060 PF00586 AIR synthase related protein, N-terminal domain VA249_07060 PF02769 AIR synthase related protein, C-terminal domain VA249_07080 PF00860 Permease family VA249_07110 PF03358 NADPH-dependent FMN reductase VA249_07120 PF03960 ArsC family VA249_07130 PF13181 Tetratricopeptide repeat VA249_07130 PF01435 Peptidase family M48 VA249_07150 PF01594 AI-2E family transporter VA249_07160 PF00578 AhpC/TSA family VA249_07170 PF01842 ACT domain VA249_07180 PF00701 Dihydrodipicolinate synthetase family VA249_07190 PF06804 NlpB/DapX lipoprotein VA249_07220 PF07687 Peptidase dimerisation domain VA249_07220 PF01546 Peptidase family M20/M25/M40 VA249_07230 PF03960 ArsC family VA249_07280 PF02899 Phage integrase, N-terminal SAM-like domain VA249_07280 PF00589 Phage integrase family VA249_07330 PF13276 HTH-like domain VA249_07330 PF13333 Integrase core domain VA249_07330 PF00665 Integrase core domain VA249_07460 PF04261 Dyp-type peroxidase family VA249_07470 PF00669 Bacterial flagellin N-terminal helical region VA249_07470 PF07196 Flagellin hook IN motif VA249_07470 PF00700 Bacterial flagellin C-terminal helical region VA249_07480 PF00700 Bacterial flagellin C-terminal helical region VA249_07480 PF07196 Flagellin hook IN motif VA249_07480 PF00669 Bacterial flagellin N-terminal helical region VA249_07490 PF00700 Bacterial flagellin C-terminal helical region VA249_07490 PF07196 Flagellin hook IN motif VA249_07490 PF00669 Bacterial flagellin N-terminal helical region VA249_07500 PF03646 FlaG protein VA249_07510 PF07196 Flagellin hook IN motif VA249_07510 PF02465 Flagellar hook-associated protein 2 N-terminus VA249_07510 PF07195 Flagellar hook-associated protein 2 C-terminus VA249_07530 PF02561 Flagellar protein FliS VA249_07540 PF06490 Flagellar regulatory protein FleQ VA249_07540 PF02954 Bacterial regulatory protein, Fis family VA249_07540 PF00158 Sigma-54 interaction domain VA249_07550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_07550 PF00512 His Kinase A (phospho-acceptor) domain VA249_07550 PF13188 PAS domain VA249_07560 PF02954 Bacterial regulatory protein, Fis family VA249_07560 PF00072 Response regulator receiver domain VA249_07560 PF00158 Sigma-54 interaction domain VA249_07570 PF02049 Flagellar hook-basal body complex protein FliE VA249_07580 PF01514 Secretory protein of YscJ/FliF family VA249_07580 PF08345 Flagellar M-ring protein C-terminal VA249_07590 PF01706 FliG C-terminal domain VA249_07590 PF14841 FliG middle domain VA249_07590 PF14842 FliG N-terminal domain VA249_07610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_07610 PF18269 T3SS EscN ATPase C-terminal domain VA249_07650 PF02154 Flagellar motor switch protein FliM VA249_07650 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA249_07660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA249_07670 PF04347 Flagellar biosynthesis protein, FliO VA249_07680 PF00813 FliP family VA249_07690 PF01313 Bacterial export proteins, family 3 VA249_07700 PF01311 Bacterial export proteins, family 1 VA249_07710 PF01312 FlhB HrpN YscU SpaS Family VA249_07720 PF00771 FHIPEP family VA249_07730 PF00448 SRP54-type protein, GTPase domain VA249_07740 PF10609 NUBPL iron-transfer P-loop NTPase VA249_07750 PF04542 Sigma-70 region 2 VA249_07750 PF04539 Sigma-70 region 3 VA249_07750 PF04545 Sigma-70, region 4 VA249_07760 PF00072 Response regulator receiver domain VA249_07770 PF04344 Chemotaxis phosphatase, CheZ VA249_07780 PF01584 CheW-like domain VA249_07780 PF02895 Signal transducing histidine kinase, homodimeric domain VA249_07780 PF01627 Hpt domain VA249_07780 PF00072 Response regulator receiver domain VA249_07780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_07790 PF01339 CheB methylesterase VA249_07790 PF00072 Response regulator receiver domain VA249_07800 PF13614 AAA domain VA249_07820 PF01584 CheW-like domain VA249_07840 PF00005 ABC transporter VA249_07850 PF03379 CcmB protein VA249_07860 PF01578 Cytochrome C assembly protein VA249_07880 PF03100 CcmE VA249_07890 PF01578 Cytochrome C assembly protein VA249_07890 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VA249_07900 PF08534 Redoxin VA249_07910 PF03918 Cytochrome C biogenesis protein VA249_07920 PF03918 Cytochrome C biogenesis protein VA249_07930 PF04333 MlaA lipoprotein VA249_07940 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA249_07950 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA249_07970 PF04542 Sigma-70 region 2 VA249_07970 PF08281 Sigma-70, region 4 VA249_07980 PF00108 Thiolase, N-terminal domain VA249_07980 PF02803 Thiolase, C-terminal domain VA249_07990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VA249_07990 PF00378 Enoyl-CoA hydratase/isomerase VA249_07990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VA249_08010 PF16187 Middle or third domain of peptidase_M16 VA249_08010 PF00675 Insulinase (Peptidase family M16) VA249_08010 PF05193 Peptidase M16 inactive domain VA249_08020 PF00300 Histidine phosphatase superfamily (branch 1) VA249_08030 PF01713 Smr domain VA249_08040 PF05175 Methyltransferase small domain VA249_08050 PF01264 Chorismate synthase VA249_08060 PF03458 UPF0126 domain VA249_08070 PF04315 Elongation factor P hydroxylase VA249_08080 PF08891 YfcL protein VA249_08090 PF03358 NADPH-dependent FMN reductase VA249_08100 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VA249_08100 PF01266 FAD dependent oxidoreductase VA249_08110 PF00109 Beta-ketoacyl synthase, N-terminal domain VA249_08110 PF02801 Beta-ketoacyl synthase, C-terminal domain VA249_08120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_08120 PF03466 LysR substrate binding domain VA249_08130 PF07715 TonB-dependent Receptor Plug Domain VA249_08130 PF00593 TonB dependent receptor VA249_08150 PF11471 Maltoporin periplasmic N-terminal extension VA249_08150 PF02264 LamB porin VA249_08160 PF00356 Bacterial regulatory proteins, lacI family VA249_08170 PF02378 Phosphotransferase system, EIIC VA249_08170 PF00367 phosphotransferase system, EIIB VA249_08180 PF00294 pfkB family carbohydrate kinase VA249_08190 PF08244 Glycosyl hydrolases family 32 C terminal VA249_08190 PF00251 Glycosyl hydrolases family 32 N-terminal domain VA249_08200 PF11890 Domain of unknown function (DUF3410) VA249_08200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_08200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA249_08210 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_08210 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA249_08230 PF01416 tRNA pseudouridine synthase VA249_08240 PF17848 Acetyl-coA carboxylase zinc finger domain VA249_08240 PF01039 Carboxyl transferase domain VA249_08250 PF08245 Mur ligase middle domain VA249_08250 PF02875 Mur ligase family, glutamate ligase domain VA249_08260 PF05036 Sporulation related domain VA249_08270 PF02674 Colicin V production protein VA249_08280 PF00156 Phosphoribosyl transferase domain VA249_08290 PF03466 LysR substrate binding domain VA249_08290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_08300 PF00072 Response regulator receiver domain VA249_08310 PF04304 Protein of unknown function (DUF454) VA249_08320 PF00156 Phosphoribosyl transferase domain VA249_08330 PF12170 DNA polymerase III tau subunit V interacting with alpha VA249_08330 PF12169 DNA polymerase III subunits gamma and tau domain III VA249_08340 PF02575 YbaB/EbfC DNA-binding family VA249_08350 PF02132 RecR protein VA249_08350 PF13662 Toprim domain VA249_08360 PF00230 Major intrinsic protein VA249_08370 PF03692 Putative zinc- or iron-chelating domain VA249_08380 PF03692 Putative zinc- or iron-chelating domain VA249_08390 PF04226 Transglycosylase associated protein VA249_08400 PF06826 Predicted Permease Membrane Region VA249_08410 PF06826 Predicted Permease Membrane Region VA249_08420 PF00282 Pyridoxal-dependent decarboxylase conserved domain VA249_08430 PF05552 Conserved TM helix VA249_08430 PF00924 Mechanosensitive ion channel VA249_08450 PF00291 Pyridoxal-phosphate dependent enzyme VA249_08460 PF13404 AsnC-type helix-turn-helix domain VA249_08460 PF01037 Lrp/AsnC ligand binding domain VA249_08480 PF09619 Type III secretion system lipoprotein chaperone (YscW) VA249_08490 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VA249_08510 PF00990 Diguanylate cyclase, GGDEF domain VA249_08510 PF05230 MASE2 domain VA249_08520 PF08032 RNA 2'-O ribose methyltransferase substrate binding VA249_08520 PF00588 SpoU rRNA Methylase family VA249_08530 PF00037 4Fe-4S binding domain VA249_08530 PF11953 Domain of unknown function (DUF3470) VA249_08550 PF00571 CBS domain VA249_08550 PF00478 IMP dehydrogenase / GMP reductase domain VA249_08560 PF01554 MatE VA249_08570 PF00403 Heavy-metal-associated domain VA249_08580 PF01048 Phosphorylase superfamily VA249_08600 PF00672 HAMP domain VA249_08600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_08610 PF01230 HIT domain VA249_08640 PF13036 Peptidoglycan-synthase activator LpoB VA249_08640 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VA249_08660 PF05728 Uncharacterised protein family (UPF0227) VA249_08670 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_08700 PF00271 Helicase conserved C-terminal domain VA249_08700 PF03461 TRCF domain VA249_08700 PF02559 CarD-like/TRCF domain VA249_08700 PF00270 DEAD/DEAH box helicase VA249_08700 PF17757 UvrB interaction domain VA249_08720 PF12704 MacB-like periplasmic core domain VA249_08720 PF02687 FtsX-like permease family VA249_08730 PF00005 ABC transporter VA249_08740 PF12704 MacB-like periplasmic core domain VA249_08740 PF02687 FtsX-like permease family VA249_08760 PF03772 Competence protein VA249_08760 PF00753 Metallo-beta-lactamase superfamily VA249_08770 PF00664 ABC transporter transmembrane region VA249_08770 PF00005 ABC transporter VA249_08780 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VA249_08790 PF03966 Trm112p-like protein VA249_08800 PF02348 Cytidylyltransferase VA249_08810 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_08820 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_08830 PF04293 SpoVR like protein VA249_08840 PF04285 Protein of unknown function (DUF444) VA249_08850 PF08298 PrkA AAA domain VA249_08850 PF06798 PrkA serine protein kinase C-terminal domain VA249_08860 PF03887 YfbU domain VA249_08880 PF04055 Radical SAM superfamily VA249_08900 PF01228 Glycine radical VA249_08900 PF02901 Pyruvate formate lyase-like VA249_08930 PF00005 ABC transporter VA249_08940 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_08950 PF00528 Binding-protein-dependent transport system inner membrane component VA249_08960 PF00528 Binding-protein-dependent transport system inner membrane component VA249_08970 PF03372 Endonuclease/Exonuclease/phosphatase family VA249_08980 PF10689 Protein of unknown function (DUF2496) VA249_08990 PF07445 Primosomal replication protein priC VA249_09000 PF01925 Sulfite exporter TauE/SafE VA249_09010 PF06733 DEAD_2 VA249_09010 PF13307 Helicase C-terminal domain VA249_09030 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VA249_09040 PF00849 RNA pseudouridylate synthase VA249_09050 PF03971 Monomeric isocitrate dehydrogenase VA249_09060 PF00313 'Cold-shock' DNA-binding domain VA249_09070 PF02617 ATP-dependent Clp protease adaptor protein ClpS VA249_09080 PF00004 ATPase family associated with various cellular activities (AAA) VA249_09080 PF07724 AAA domain (Cdc48 subfamily) VA249_09080 PF17871 AAA lid domain VA249_09080 PF02861 Clp amino terminal domain, pathogenicity island component VA249_09080 PF10431 C-terminal, D2-small domain, of ClpB protein VA249_09090 PF01176 Translation initiation factor 1A / IF-1 VA249_09100 PF04377 Arginine-tRNA-protein transferase, C terminus VA249_09100 PF04376 Arginine-tRNA-protein transferase, N terminus VA249_09110 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VA249_09130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VA249_09140 PF10692 Protein of unknown function (DUF2498) VA249_09150 PF08272 Topoisomerase I zinc-ribbon-like VA249_09150 PF01751 Toprim domain VA249_09150 PF01396 Topoisomerase DNA binding C4 zinc finger VA249_09150 PF01131 DNA topoisomerase VA249_09170 PF00483 Nucleotidyl transferase VA249_09180 PF08323 Starch synthase catalytic domain VA249_09180 PF00534 Glycosyl transferases group 1 VA249_09220 PF04994 TfoX C-terminal domain VA249_09220 PF04993 TfoX N-terminal domain VA249_09240 PF00356 Bacterial regulatory proteins, lacI family VA249_09250 PF02613 Nitrate reductase delta subunit VA249_09260 PF00072 Response regulator receiver domain VA249_09260 PF00486 Transcriptional regulatory protein, C terminal VA249_09270 PF02698 DUF218 domain VA249_09280 PF13847 Methyltransferase domain VA249_09290 PF03882 MukF winged-helix domain VA249_09290 PF17193 MukF C-terminal domain VA249_09290 PF17192 MukF middle domain VA249_09300 PF04288 MukE-like family VA249_09310 PF16330 MukB hinge domain VA249_09310 PF04310 MukB N-terminal VA249_09350 PF18030 RimK PreATP-grasp domain VA249_09350 PF08443 RimK-like ATP-grasp domain VA249_09360 PF08003 Protein of unknown function (DUF1698) VA249_09370 PF13649 Methyltransferase domain VA249_09380 PF01904 Protein of unknown function DUF72 VA249_09390 PF02938 GAD domain VA249_09390 PF00152 tRNA synthetases class II (D, K and N) VA249_09390 PF01336 OB-fold nucleic acid binding domain VA249_09400 PF02075 Crossover junction endodeoxyribonuclease RuvC VA249_09410 PF01330 RuvA N terminal domain VA249_09410 PF07499 RuvA, C-terminal domain VA249_09420 PF05496 Holliday junction DNA helicase RuvB P-loop domain VA249_09420 PF05491 RuvB C-terminal winged helix domain VA249_09420 PF17864 RuvB AAA lid domain VA249_09430 PF01654 Cytochrome bd terminal oxidase subunit I VA249_09440 PF02322 Cytochrome bd terminal oxidase subunit II VA249_09460 PF03061 Thioesterase superfamily VA249_09470 PF01618 MotA/TolQ/ExbB proton channel family VA249_09480 PF02472 Biopolymer transport protein ExbD/TolR VA249_09500 PF07676 WD40-like Beta Propeller Repeat VA249_09500 PF04052 TolB amino-terminal domain VA249_09510 PF00691 OmpA family VA249_09520 PF16331 TolA binding protein trimerisation VA249_09520 PF13174 Tetratricopeptide repeat VA249_09530 PF02445 Quinolinate synthetase A protein VA249_09560 PF00072 Response regulator receiver domain VA249_09560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_09560 PF00512 His Kinase A (phospho-acceptor) domain VA249_09560 PF09308 LuxQ, periplasmic VA249_09570 PF06610 L-alanine exporter VA249_09620 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VA249_09620 PF08463 EcoEI R protein C-terminal VA249_09620 PF04851 Type III restriction enzyme, res subunit VA249_09620 PF00271 Helicase conserved C-terminal domain VA249_09630 PF03747 ADP-ribosylglycohydrolase VA249_09760 PF02743 Cache domain VA249_09760 PF00672 HAMP domain VA249_09760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_09780 PF00529 HlyD membrane-fusion protein of T1SS VA249_09780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_09790 PF00873 AcrB/AcrD/AcrF family VA249_09840 PF00474 Sodium:solute symporter family VA249_09880 PF00892 EamA-like transporter family VA249_09890 PF00929 Exonuclease VA249_09890 PF02811 PHP domain VA249_09890 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_09890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_09890 PF14579 Helix-hairpin-helix motif VA249_09900 PF00571 CBS domain VA249_09910 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_09920 PF00392 Bacterial regulatory proteins, gntR family VA249_09920 PF07729 FCD domain VA249_09930 PF00392 Bacterial regulatory proteins, gntR family VA249_09930 PF07729 FCD domain VA249_09940 PF01554 MatE VA249_09960 PF07940 Heparinase II/III-like protein VA249_09960 PF05426 Alginate lyase VA249_09970 PF07940 Heparinase II/III-like protein VA249_09970 PF05426 Alginate lyase VA249_09980 PF07883 Cupin domain VA249_09990 PF00294 pfkB family carbohydrate kinase VA249_10000 PF01081 KDPG and KHG aldolase VA249_10020 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_10030 PF07859 alpha/beta hydrolase fold VA249_10040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_10040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_10050 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VA249_10070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_10070 PF03466 LysR substrate binding domain VA249_10090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VA249_10090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VA249_10100 PF01037 Lrp/AsnC ligand binding domain VA249_10110 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VA249_10110 PF17854 FtsK alpha domain VA249_10110 PF09397 Ftsk gamma domain VA249_10110 PF01580 FtsK/SpoIIIE family VA249_10120 PF01580 FtsK/SpoIIIE family VA249_10120 PF09397 Ftsk gamma domain VA249_10120 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VA249_10120 PF17854 FtsK alpha domain VA249_10130 PF03548 Outer membrane lipoprotein carrier protein LolA VA249_10140 PF00004 ATPase family associated with various cellular activities (AAA) VA249_10140 PF12002 MgsA AAA+ ATPase C terminal VA249_10140 PF16193 AAA C-terminal domain VA249_10150 PF02403 Seryl-tRNA synthetase N-terminal domain VA249_10150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA249_10160 PF01258 Prokaryotic dksA/traR C4-type zinc finger VA249_10170 PF00202 Aminotransferase class-III VA249_10180 PF04055 Radical SAM superfamily VA249_10180 PF06968 Biotin and Thiamin Synthesis associated domain VA249_10190 PF00155 Aminotransferase class I and II VA249_10200 PF08241 Methyltransferase domain VA249_10250 PF01435 Peptidase family M48 VA249_10270 PF00106 short chain dehydrogenase VA249_10330 PF16036 Chalcone isomerase-like VA249_10350 PF00206 Lyase VA249_10350 PF08328 Adenylosuccinate lyase C-terminal VA249_10360 PF04356 Protein of unknown function (DUF489) VA249_10390 PF00294 pfkB family carbohydrate kinase VA249_10400 PF00816 H-NS histone family VA249_10410 PF03553 Na+/H+ antiporter family VA249_10420 PF01634 ATP phosphoribosyltransferase VA249_10420 PF08029 HisG, C-terminal domain VA249_10430 PF00815 Histidinol dehydrogenase VA249_10440 PF00155 Aminotransferase class I and II VA249_10450 PF00475 Imidazoleglycerol-phosphate dehydratase VA249_10450 PF08645 Polynucleotide kinase 3 phosphatase VA249_10460 PF00117 Glutamine amidotransferase class-I VA249_10470 PF00977 Histidine biosynthesis protein VA249_10480 PF00977 Histidine biosynthesis protein VA249_10490 PF01502 Phosphoribosyl-AMP cyclohydrolase VA249_10490 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VA249_10500 PF02810 SEC-C motif VA249_10510 PF00563 EAL domain VA249_10510 PF08668 HDOD domain VA249_10520 PF00149 Calcineurin-like phosphoesterase VA249_10530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA249_10540 PF09190 DALR domain VA249_10540 PF01406 tRNA synthetases class I (C) catalytic domain VA249_10550 PF00265 Thymidine kinase VA249_10560 PF02698 DUF218 domain VA249_10610 PF01226 Formate/nitrite transporter VA249_10630 PF03649 Uncharacterised protein family (UPF0014) VA249_10640 PF06796 Periplasmic nitrate reductase protein NapE VA249_10650 PF03264 NapC/NirT cytochrome c family, N-terminal region VA249_10660 PF00384 Molybdopterin oxidoreductase VA249_10660 PF01568 Molydopterin dinucleotide binding domain VA249_10660 PF18364 Molybdopterin oxidoreductase N-terminal domain VA249_10670 PF16874 Glycosyl hydrolase family 36 C-terminal domain VA249_10670 PF16875 Glycosyl hydrolase family 36 N-terminal domain VA249_10690 PF01368 DHH family VA249_10690 PF02833 DHHA2 domain VA249_10710 PF00005 ABC transporter VA249_10720 PF00005 ABC transporter VA249_10720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_10730 PF00528 Binding-protein-dependent transport system inner membrane component VA249_10730 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_10740 PF00528 Binding-protein-dependent transport system inner membrane component VA249_10750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_10760 PF00158 Sigma-54 interaction domain VA249_10760 PF02954 Bacterial regulatory protein, Fis family VA249_10770 PF04012 PspA/IM30 family VA249_10780 PF06667 Phage shock protein B VA249_10800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_10810 PF13533 Biotin-lipoyl like VA249_10820 PF00873 AcrB/AcrD/AcrF family VA249_10830 PF00873 AcrB/AcrD/AcrF family VA249_10840 PF03352 Methyladenine glycosylase VA249_10850 PF01053 Cys/Met metabolism PLP-dependent enzyme VA249_10860 PF13091 PLD-like domain VA249_10860 PF13396 Phospholipase_D-nuclease N-terminal VA249_10870 PF00209 Sodium:neurotransmitter symporter family VA249_10880 PF12729 Four helix bundle sensory module for signal transduction VA249_10880 PF00672 HAMP domain VA249_10880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_10890 PF00849 RNA pseudouridylate synthase VA249_10910 PF00970 Oxidoreductase FAD-binding domain VA249_10910 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_10910 PF00175 Oxidoreductase NAD-binding domain VA249_10920 PF03063 Prismane/CO dehydrogenase family VA249_10930 PF00158 Sigma-54 interaction domain VA249_10930 PF01590 GAF domain VA249_10950 PF01066 CDP-alcohol phosphatidyltransferase VA249_10960 PF00005 ABC transporter VA249_10970 PF00528 Binding-protein-dependent transport system inner membrane component VA249_10980 PF13416 Bacterial extracellular solute-binding protein VA249_10990 PF09335 SNARE associated Golgi protein VA249_11010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA249_11010 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_11030 PF00512 His Kinase A (phospho-acceptor) domain VA249_11030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_11040 PF00196 Bacterial regulatory proteins, luxR family VA249_11040 PF00072 Response regulator receiver domain VA249_11070 PF02872 5'-nucleotidase, C-terminal domain VA249_11070 PF00149 Calcineurin-like phosphoesterase VA249_11080 PF01386 Ribosomal L25p family VA249_11090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_11100 PF00072 Response regulator receiver domain VA249_11100 PF00486 Transcriptional regulatory protein, C terminal VA249_11120 PF00271 Helicase conserved C-terminal domain VA249_11120 PF04851 Type III restriction enzyme, res subunit VA249_11130 PF00849 RNA pseudouridylate synthase VA249_11130 PF01479 S4 domain VA249_11140 PF07690 Major Facilitator Superfamily VA249_11160 PF00474 Sodium:solute symporter family VA249_11170 PF16874 Glycosyl hydrolase family 36 C-terminal domain VA249_11170 PF16875 Glycosyl hydrolase family 36 N-terminal domain VA249_11180 PF00356 Bacterial regulatory proteins, lacI family VA249_11190 PF11066 Protein of unknown function (DUF2867) VA249_11190 PF13460 NAD(P)H-binding VA249_11210 PF01554 MatE VA249_11220 PF00005 ABC transporter VA249_11250 PF06965 Na+/H+ antiporter 1 VA249_11260 PF16295 Tetracyclin repressor-like, C-terminal domain VA249_11260 PF00440 Bacterial regulatory proteins, tetR family VA249_11270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_11270 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_11270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_11270 PF09317 Domain of unknown function (DUF1974) VA249_11280 PF12241 Trans-2-enoyl-CoA reductase catalytic region VA249_11280 PF07055 Enoyl reductase FAD binding domain VA249_11280 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VA249_11290 PF06826 Predicted Permease Membrane Region VA249_11290 PF02080 TrkA-C domain VA249_11300 PF00462 Glutaredoxin VA249_11310 PF00465 Iron-containing alcohol dehydrogenase VA249_11320 PF01418 Helix-turn-helix domain, rpiR family VA249_11320 PF01380 SIS domain VA249_11330 PF00282 Pyridoxal-dependent decarboxylase conserved domain VA249_11350 PF03956 Lysine exporter LysO VA249_11390 PF04994 TfoX C-terminal domain VA249_11390 PF04993 TfoX N-terminal domain VA249_11420 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_11420 PF00512 His Kinase A (phospho-acceptor) domain VA249_11420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_11440 PF00266 Aminotransferase class-V VA249_11460 PF07694 5TMR of 5TMR-LYT VA249_11460 PF00990 Diguanylate cyclase, GGDEF domain VA249_11490 PF00664 ABC transporter transmembrane region VA249_11490 PF00005 ABC transporter VA249_11500 PF00664 ABC transporter transmembrane region VA249_11500 PF00005 ABC transporter VA249_11510 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_11540 PF00266 Aminotransferase class-V VA249_11560 PF00990 Diguanylate cyclase, GGDEF domain VA249_11560 PF08448 PAS fold VA249_11570 PF00939 Sodium:sulfate symporter transmembrane region VA249_11580 PF02698 DUF218 domain VA249_11590 PF03949 Malic enzyme, NAD binding domain VA249_11590 PF00390 Malic enzyme, N-terminal domain VA249_11600 PF00270 DEAD/DEAH box helicase VA249_11600 PF11898 Domain of unknown function (DUF3418) VA249_11600 PF04408 Helicase associated domain (HA2) VA249_11600 PF00271 Helicase conserved C-terminal domain VA249_11600 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VA249_11620 PF01259 SAICAR synthetase VA249_11660 PF05736 OprF membrane domain VA249_11660 PF00691 OmpA family VA249_11690 PF13183 4Fe-4S dicluster domain VA249_11690 PF02913 FAD linked oxidases, C-terminal domain VA249_11690 PF01565 FAD binding domain VA249_11720 PF00221 Aromatic amino acid lyase VA249_11730 PF01175 Urocanase Rossmann-like domain VA249_11730 PF17392 Urocanase C-terminal domain VA249_11730 PF17391 Urocanase N-terminal domain VA249_11740 PF00491 Arginase family VA249_11750 PF01979 Amidohydrolase family VA249_11760 PF00392 Bacterial regulatory proteins, gntR family VA249_11760 PF07702 UTRA domain VA249_11790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_11790 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_11790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_11800 PF17158 Membrane-associated sensor, integral membrane domain VA249_11800 PF00990 Diguanylate cyclase, GGDEF domain VA249_11810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VA249_11810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA249_11810 PF02824 TGS domain VA249_11810 PF03129 Anticodon binding domain VA249_11820 PF00707 Translation initiation factor IF-3, C-terminal domain VA249_11820 PF05198 Translation initiation factor IF-3, N-terminal domain VA249_11830 PF01632 Ribosomal protein L35 VA249_11840 PF00453 Ribosomal protein L20 VA249_11850 PF01906 Putative heavy-metal-binding VA249_11870 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VA249_11870 PF01409 tRNA synthetases class II core domain (F) VA249_11880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VA249_11880 PF03483 B3/4 domain VA249_11880 PF03484 tRNA synthetase B5 domain VA249_11880 PF03147 Ferredoxin-fold anticodon binding domain VA249_11880 PF01588 Putative tRNA binding domain VA249_11930 PF00704 Glycosyl hydrolases family 18 VA249_11930 PF08329 Chitinase A, N-terminal domain VA249_11940 PF02525 Flavodoxin-like fold VA249_11950 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VA249_11950 PF11898 Domain of unknown function (DUF3418) VA249_11950 PF04408 Helicase associated domain (HA2) VA249_11950 PF00271 Helicase conserved C-terminal domain VA249_11950 PF00270 DEAD/DEAH box helicase VA249_11970 PF01554 MatE VA249_11980 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VA249_11990 PF00528 Binding-protein-dependent transport system inner membrane component VA249_12000 PF00005 ABC transporter VA249_12000 PF00571 CBS domain VA249_12030 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_12040 PF00583 Acetyltransferase (GNAT) family VA249_12050 PF00202 Aminotransferase class-III VA249_12060 PF06339 Ectoine synthase VA249_12070 PF00696 Amino acid kinase family VA249_12070 PF13840 ACT domain VA249_12080 PF03466 LysR substrate binding domain VA249_12080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_12090 PF05368 NmrA-like family VA249_12120 PF13533 Biotin-lipoyl like VA249_12160 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VA249_12160 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VA249_12170 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VA249_12180 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VA249_12180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_12240 PF01867 CRISPR associated protein Cas1 VA249_12330 PF01590 GAF domain VA249_12330 PF02954 Bacterial regulatory protein, Fis family VA249_12330 PF00158 Sigma-54 interaction domain VA249_12340 PF00171 Aldehyde dehydrogenase family VA249_12350 PF00873 AcrB/AcrD/AcrF family VA249_12360 PF16868 NMT1-like family VA249_12370 PF01925 Sulfite exporter TauE/SafE VA249_12390 PF00392 Bacterial regulatory proteins, gntR family VA249_12390 PF07729 FCD domain VA249_12410 PF00285 Citrate synthase, C-terminal domain VA249_12420 PF00330 Aconitase family (aconitate hydratase) VA249_12420 PF00694 Aconitase C-terminal domain VA249_12430 PF04303 PrpF protein VA249_12440 PF16177 Acetyl-coenzyme A synthetase N-terminus VA249_12440 PF00501 AMP-binding enzyme VA249_12440 PF13193 AMP-binding enzyme C-terminal domain VA249_12480 PF04055 Radical SAM superfamily VA249_12490 PF06508 Queuosine biosynthesis protein QueC VA249_12500 PF00990 Diguanylate cyclase, GGDEF domain VA249_12550 PF10672 S-adenosylmethionine-dependent methyltransferase VA249_12550 PF17785 PUA-like domain VA249_12560 PF12729 Four helix bundle sensory module for signal transduction VA249_12560 PF00672 HAMP domain VA249_12560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_12570 PF00708 Acylphosphatase VA249_12580 PF04358 DsrC like protein VA249_12590 PF01027 Inhibitor of apoptosis-promoting Bax1 VA249_12600 PF00005 ABC transporter VA249_12610 PF00528 Binding-protein-dependent transport system inner membrane component VA249_12620 PF00528 Binding-protein-dependent transport system inner membrane component VA249_12630 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_12640 PF10414 Sirohaem synthase dimerisation region VA249_12640 PF14824 Sirohaem biosynthesis protein central VA249_12640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_12650 PF04461 Protein of unknown function (DUF520) VA249_12660 PF00793 DAHP synthetase I family VA249_12700 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VA249_12700 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VA249_12700 PF01189 16S rRNA methyltransferase RsmB/F VA249_12710 PF02470 MlaD protein VA249_12720 PF04403 Paraquat-inducible protein A VA249_12730 PF00664 ABC transporter transmembrane region VA249_12730 PF00005 ABC transporter VA249_12740 PF13185 GAF domain VA249_12760 PF17516 ProQ C-terminal domain VA249_12760 PF04352 ProQ/FINO family VA249_12770 PF11818 C-terminal domain of tail specific protease (DUF3340) VA249_12770 PF00595 PDZ domain VA249_12770 PF03572 Peptidase family S41 VA249_12770 PF17804 Tail specific protease N-terminal domain VA249_12790 PF11940 Domain of unknown function (DUF3458) Ig-like fold VA249_12790 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VA249_12790 PF01433 Peptidase family M1 domain VA249_12800 PF05088 Bacterial NAD-glutamate dehydrogenase VA249_12810 PF01180 Dihydroorotate dehydrogenase VA249_12820 PF07126 Cell-division protein ZapC VA249_12830 PF10672 S-adenosylmethionine-dependent methyltransferase VA249_12830 PF01170 Putative RNA methylase family UPF0020 VA249_12830 PF02926 THUMP domain VA249_12850 PF00005 ABC transporter VA249_12850 PF16326 ABC transporter C-terminal domain VA249_12850 PF12848 ABC transporter VA249_12870 PF04957 Ribosome modulation factor VA249_12880 PF07977 FabA-like domain VA249_12890 PF13654 AAA domain VA249_12890 PF05362 Lon protease (S16) C-terminal proteolytic domain VA249_12900 PF06303 MatP N-terminal domain VA249_12900 PF17414 MatP C-terminal ribbon-helix-helix domain VA249_12940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_12940 PF09308 LuxQ, periplasmic VA249_12940 PF00072 Response regulator receiver domain VA249_12940 PF00512 His Kinase A (phospho-acceptor) domain VA249_12970 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA249_13000 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VA249_13000 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA249_13020 PF00403 Heavy-metal-associated domain VA249_13050 PF13545 Crp-like helix-turn-helix domain VA249_13050 PF00027 Cyclic nucleotide-binding domain VA249_13060 PF00582 Universal stress protein family VA249_13070 PF01171 PP-loop family VA249_13110 PF08402 TOBE domain VA249_13110 PF00005 ABC transporter VA249_13120 PF00528 Binding-protein-dependent transport system inner membrane component VA249_13130 PF00528 Binding-protein-dependent transport system inner membrane component VA249_13140 PF13416 Bacterial extracellular solute-binding protein VA249_13150 PF13416 Bacterial extracellular solute-binding protein VA249_13160 PF02146 Sir2 family VA249_13190 PF13247 4Fe-4S dicluster domain VA249_13200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_13200 PF01568 Molydopterin dinucleotide binding domain VA249_13200 PF00384 Molybdopterin oxidoreductase VA249_13220 PF02613 Nitrate reductase delta subunit VA249_13260 PF02634 FdhD/NarQ family VA249_13270 PF00005 ABC transporter VA249_13270 PF12848 ABC transporter VA249_13300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_13300 PF00512 His Kinase A (phospho-acceptor) domain VA249_13310 PF00072 Response regulator receiver domain VA249_13310 PF00158 Sigma-54 interaction domain VA249_13310 PF02954 Bacterial regulatory protein, Fis family VA249_13320 PF12849 PBP superfamily domain VA249_13330 PF00528 Binding-protein-dependent transport system inner membrane component VA249_13340 PF08402 TOBE domain VA249_13340 PF00005 ABC transporter VA249_13350 PF12804 MobA-like NTP transferase domain VA249_13360 PF03453 MoeA N-terminal region (domain I and II) VA249_13360 PF03454 MoeA C-terminal region (domain IV) VA249_13360 PF00994 Probable molybdopterin binding domain VA249_13380 PF00480 ROK family VA249_13390 PF03942 DTW domain VA249_13420 PF00877 NlpC/P60 family VA249_13440 PF00990 Diguanylate cyclase, GGDEF domain VA249_13440 PF05230 MASE2 domain VA249_13450 PF00072 Response regulator receiver domain VA249_13450 PF01339 CheB methylesterase VA249_13460 PF03881 Fructosamine kinase VA249_13480 PF00677 Lumazine binding domain VA249_13490 PF01554 MatE VA249_13530 PF13402 Peptidase M60, enhancin and enhancin-like VA249_13530 PF17291 N-terminal domain of M60-like peptidases VA249_13530 PF13322 Domain of unknown function (DUF4092) VA249_13540 PF12464 Maltose acetyltransferase VA249_13540 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_13570 PF00892 EamA-like transporter family VA249_13580 PF03729 Short repeat of unknown function (DUF308) VA249_13590 PF00924 Mechanosensitive ion channel VA249_13600 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VA249_13610 PF00582 Universal stress protein family VA249_13630 PF00072 Response regulator receiver domain VA249_13630 PF09308 LuxQ, periplasmic VA249_13630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_13630 PF00512 His Kinase A (phospho-acceptor) domain VA249_13640 PF01740 STAS domain VA249_13690 PF02954 Bacterial regulatory protein, Fis family VA249_13690 PF00158 Sigma-54 interaction domain VA249_13690 PF00072 Response regulator receiver domain VA249_13700 PF00534 Glycosyl transferases group 1 VA249_13700 PF13439 Glycosyltransferase Family 4 VA249_13750 PF12464 Maltose acetyltransferase VA249_13750 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_13770 PF13614 AAA domain VA249_13770 PF02706 Chain length determinant protein VA249_13770 PF13807 G-rich domain on putative tyrosine kinase VA249_13780 PF00534 Glycosyl transferases group 1 VA249_13780 PF13439 Glycosyltransferase Family 4 VA249_13800 PF02397 Bacterial sugar transferase VA249_13840 PF18650 Immunomodulating metalloprotease N-terminal domain VA249_13840 PF18642 Immunomodulating metalloprotease helical domain VA249_13840 PF13402 Peptidase M60, enhancin and enhancin-like VA249_13870 PF14497 Glutathione S-transferase, C-terminal domain VA249_13870 PF02798 Glutathione S-transferase, N-terminal domain VA249_13890 PF04209 homogentisate 1,2-dioxygenase VA249_13900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_13970 PF07969 Amidohydrolase family VA249_14010 PF07687 Peptidase dimerisation domain VA249_14010 PF01546 Peptidase family M20/M25/M40 VA249_14050 PF03466 LysR substrate binding domain VA249_14050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_14060 PF07690 Major Facilitator Superfamily VA249_14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_14080 PF03466 LysR substrate binding domain VA249_14190 PF00528 Binding-protein-dependent transport system inner membrane component VA249_14200 PF00528 Binding-protein-dependent transport system inner membrane component VA249_14210 PF00005 ABC transporter VA249_14210 PF08402 TOBE domain VA249_14220 PF00701 Dihydrodipicolinate synthetase family VA249_14230 PF02423 Ornithine cyclodeaminase/mu-crystallin family VA249_14250 PF01266 FAD dependent oxidoreductase VA249_14260 PF05544 Proline racemase VA249_14270 PF00171 Aldehyde dehydrogenase family VA249_14280 PF00392 Bacterial regulatory proteins, gntR family VA249_14300 PF00072 Response regulator receiver domain VA249_14300 PF00990 Diguanylate cyclase, GGDEF domain VA249_14330 PF00072 Response regulator receiver domain VA249_14330 PF09456 RcsC Alpha-Beta-Loop (ABL) VA249_14330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_14330 PF00512 His Kinase A (phospho-acceptor) domain VA249_14340 PF05971 RNA methyltransferase VA249_14350 PF01863 Protein of unknown function DUF45 VA249_14370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_14370 PF03466 LysR substrate binding domain VA249_14380 PF07690 Major Facilitator Superfamily VA249_14440 PF01235 Sodium:alanine symporter family VA249_14450 PF01810 LysE type translocator VA249_14460 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VA249_14470 PF03279 Bacterial lipid A biosynthesis acyltransferase VA249_14480 PF01810 LysE type translocator VA249_14490 PF13520 Amino acid permease VA249_14500 PF00893 Small Multidrug Resistance protein VA249_14520 PF04204 Homoserine O-succinyltransferase VA249_14540 PF00005 ABC transporter VA249_14550 PF01032 FecCD transport family VA249_14560 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VA249_14590 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VA249_14600 PF02654 Cobalamin-5-phosphate synthase VA249_14610 PF02277 Phosphoribosyltransferase VA249_14620 PF13460 NAD(P)H-binding VA249_14640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_14640 PF00512 His Kinase A (phospho-acceptor) domain VA249_14640 PF09308 LuxQ, periplasmic VA249_14640 PF00072 Response regulator receiver domain VA249_14680 PF13737 Transposase DDE domain VA249_14760 PF00512 His Kinase A (phospho-acceptor) domain VA249_14760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_14760 PF09456 RcsC Alpha-Beta-Loop (ABL) VA249_14760 PF00072 Response regulator receiver domain VA249_14770 PF03707 Bacterial signalling protein N terminal repeat VA249_14770 PF00990 Diguanylate cyclase, GGDEF domain VA249_14770 PF00563 EAL domain VA249_14780 PF00072 Response regulator receiver domain VA249_14780 PF09308 LuxQ, periplasmic VA249_14780 PF00512 His Kinase A (phospho-acceptor) domain VA249_14780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_14800 PF07702 UTRA domain VA249_14800 PF00392 Bacterial regulatory proteins, gntR family VA249_14810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA249_14810 PF02378 Phosphotransferase system, EIIC VA249_14810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA249_14820 PF09261 Alpha mannosidase middle domain VA249_14820 PF01074 Glycosyl hydrolases family 38 N-terminal domain VA249_14820 PF07748 Glycosyl hydrolases family 38 C-terminal domain VA249_14830 PF01238 Phosphomannose isomerase type I VA249_14840 PF00990 Diguanylate cyclase, GGDEF domain VA249_14840 PF03707 Bacterial signalling protein N terminal repeat VA249_14840 PF00563 EAL domain VA249_14860 PF08411 Exonuclease C-terminal VA249_14860 PF00929 Exonuclease VA249_14870 PF03788 LrgA family VA249_14880 PF04172 LrgB-like family VA249_14890 PF04172 LrgB-like family VA249_14900 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_14900 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_14910 PF02222 ATP-grasp domain VA249_14920 PF05724 Thiopurine S-methyltransferase (TPMT) VA249_14940 PF00216 Bacterial DNA-binding protein VA249_14960 PF00990 Diguanylate cyclase, GGDEF domain VA249_14980 PF00012 Hsp70 protein VA249_14990 PF00012 Hsp70 protein VA249_15020 PF00005 ABC transporter VA249_15020 PF00664 ABC transporter transmembrane region VA249_15030 PF00005 ABC transporter VA249_15030 PF00664 ABC transporter transmembrane region VA249_15060 PF00072 Response regulator receiver domain VA249_15070 PF03222 Tryptophan/tyrosine permease family VA249_15080 PF00465 Iron-containing alcohol dehydrogenase VA249_15100 PF03741 Integral membrane protein TerC family VA249_15110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_15110 PF03466 LysR substrate binding domain VA249_15120 PF04055 Radical SAM superfamily VA249_15130 PF11230 Protein of unknown function (DUF3029) VA249_15140 PF01810 LysE type translocator VA249_15150 PF11871 Domain of unknown function (DUF3391) VA249_15150 PF01966 HD domain VA249_15160 PF00563 EAL domain VA249_15160 PF00990 Diguanylate cyclase, GGDEF domain VA249_15170 PF00072 Response regulator receiver domain VA249_15170 PF00158 Sigma-54 interaction domain VA249_15170 PF02954 Bacterial regulatory protein, Fis family VA249_15180 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_15180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_15180 PF00512 His Kinase A (phospho-acceptor) domain VA249_15190 PF00939 Sodium:sulfate symporter transmembrane region VA249_15210 PF00583 Acetyltransferase (GNAT) family VA249_15310 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_15320 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_15430 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_15450 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VA249_15460 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VA249_15550 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_15590 PF00293 NUDIX domain VA249_15720 PF00583 Acetyltransferase (GNAT) family VA249_15760 PF04229 GrpB protein VA249_15850 PF00589 Phage integrase family VA249_15850 PF13495 Phage integrase, N-terminal SAM-like domain VA249_15880 PF13302 Acetyltransferase (GNAT) domain VA249_15890 PF18024 Helix-turn-helix domain VA249_15890 PF00158 Sigma-54 interaction domain VA249_15900 PF05128 Domain of unknown function (DUF697) VA249_15910 PF04317 YcjX-like family, DUF463 VA249_15940 PF00425 chorismate binding enzyme VA249_15940 PF04715 Anthranilate synthase component I, N terminal region VA249_15950 PF00293 NUDIX domain VA249_15960 PF03222 Tryptophan/tyrosine permease family VA249_15970 PF03315 Serine dehydratase beta chain VA249_15970 PF03313 Serine dehydratase alpha chain VA249_15990 PF01242 6-pyruvoyl tetrahydropterin synthase VA249_16000 PF00152 tRNA synthetases class II (D, K and N) VA249_16000 PF01336 OB-fold nucleic acid binding domain VA249_16030 PF00155 Aminotransferase class I and II VA249_16060 PF11490 DNA polymerase III polC-type N-terminus II VA249_16060 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_16060 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_16060 PF14579 Helix-hairpin-helix motif VA249_16060 PF02811 PHP domain VA249_16060 PF00929 Exonuclease VA249_16060 PF14480 DNA polymerase III polC-type N-terminus I VA249_16070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_16070 PF02743 Cache domain VA249_16070 PF00672 HAMP domain VA249_16220 PF01653 NAD-dependent DNA ligase adenylation domain VA249_16220 PF00533 BRCA1 C Terminus (BRCT) domain VA249_16220 PF03120 NAD-dependent DNA ligase OB-fold domain VA249_16220 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VA249_16220 PF12826 Helix-hairpin-helix motif VA249_16260 PF07508 Recombinase VA249_16260 PF00239 Resolvase, N terminal domain VA249_16260 PF13408 Recombinase zinc beta ribbon domain VA249_16280 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_16300 PF00196 Bacterial regulatory proteins, luxR family VA249_16300 PF00072 Response regulator receiver domain VA249_16320 PF07730 Histidine kinase VA249_16320 PF17200 Single Cache domain 2 VA249_16330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VA249_16350 PF03480 Bacterial extracellular solute-binding protein, family 7 VA249_16380 PF00753 Metallo-beta-lactamase superfamily VA249_16390 PF05951 Bacterial protein of unknown function (DUF882) VA249_16400 PF01471 Putative peptidoglycan binding domain VA249_16400 PF03734 L,D-transpeptidase catalytic domain VA249_16410 PF00925 GTP cyclohydrolase II VA249_16450 PF03989 DNA gyrase C-terminal domain, beta-propeller VA249_16450 PF00521 DNA gyrase/topoisomerase IV, subunit A VA249_16470 PF03477 ATP cone domain VA249_16470 PF02867 Ribonucleotide reductase, barrel domain VA249_16470 PF00317 Ribonucleotide reductase, all-alpha domain VA249_16480 PF00268 Ribonucleotide reductase, small chain VA249_16500 PF00994 Probable molybdopterin binding domain VA249_16520 PF01842 ACT domain VA249_16520 PF02153 Prephenate dehydrogenase VA249_16530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VA249_16540 PF16653 Saccharopine dehydrogenase C-terminal domain VA249_16540 PF03435 Saccharopine dehydrogenase NADP binding domain VA249_16550 PF00202 Aminotransferase class-III VA249_16560 PF01066 CDP-alcohol phosphatidyltransferase VA249_16570 PF01541 GIY-YIG catalytic domain VA249_16570 PF02151 UvrB/uvrC motif VA249_16570 PF08459 UvrC Helix-hairpin-helix N-terminal VA249_16580 PF00196 Bacterial regulatory proteins, luxR family VA249_16580 PF00072 Response regulator receiver domain VA249_16590 PF00136 DNA polymerase family B VA249_16590 PF03104 DNA polymerase family B, exonuclease domain VA249_16610 PF01132 Elongation factor P (EF-P) OB domain VA249_16610 PF08207 Elongation factor P (EF-P) KOW-like domain VA249_16610 PF09285 Elongation factor P, C-terminal VA249_16620 PF04269 Protein of unknown function, DUF440 VA249_16630 PF00849 RNA pseudouridylate synthase VA249_16630 PF01479 S4 domain VA249_16640 PF01300 Telomere recombination VA249_16650 PF02811 PHP domain VA249_16660 PF04715 Anthranilate synthase component I, N terminal region VA249_16660 PF00425 chorismate binding enzyme VA249_16670 PF00117 Glutamine amidotransferase class-I VA249_16680 PF02885 Glycosyl transferase family, helical bundle domain VA249_16680 PF00591 Glycosyl transferase family, a/b domain VA249_16690 PF00218 Indole-3-glycerol phosphate synthase VA249_16690 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VA249_16700 PF00291 Pyridoxal-phosphate dependent enzyme VA249_16710 PF00290 Tryptophan synthase alpha chain VA249_16720 PF00375 Sodium:dicarboxylate symporter family VA249_16730 PF04279 Intracellular septation protein A VA249_16740 PF03061 Thioesterase superfamily VA249_16750 PF03795 YCII-related domain VA249_16770 PF01717 Cobalamin-independent synthase, Catalytic domain VA249_16770 PF08267 Cobalamin-independent synthase, N-terminal domain VA249_16780 PF03466 LysR substrate binding domain VA249_16780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_16810 PF00990 Diguanylate cyclase, GGDEF domain VA249_16810 PF00563 EAL domain VA249_16810 PF03707 Bacterial signalling protein N terminal repeat VA249_16820 PF08497 Radical SAM N-terminal VA249_16820 PF04055 Radical SAM superfamily VA249_16820 PF11842 Domain of unknown function (DUF3362) VA249_16830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_16830 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_16840 PF00375 Sodium:dicarboxylate symporter family VA249_16850 PF01042 Endoribonuclease L-PSP VA249_16860 PF08348 YheO-like PAS domain VA249_16860 PF13309 HTH domain VA249_16870 PF00672 HAMP domain VA249_16870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_16890 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VA249_16900 PF00535 Glycosyl transferase family 2 VA249_16910 PF00072 Response regulator receiver domain VA249_16910 PF00486 Transcriptional regulatory protein, C terminal VA249_16920 PF00672 HAMP domain VA249_16920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_16920 PF00512 His Kinase A (phospho-acceptor) domain VA249_16960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_16960 PF03466 LysR substrate binding domain VA249_16970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_16970 PF00529 HlyD membrane-fusion protein of T1SS VA249_17020 PF00085 Thioredoxin VA249_17030 PF11412 Disulphide bond corrector protein DsbC VA249_17030 PF02683 Cytochrome C biogenesis protein transmembrane region VA249_17050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_17050 PF03466 LysR substrate binding domain VA249_17060 PF01966 HD domain VA249_17080 PF16875 Glycosyl hydrolase family 36 N-terminal domain VA249_17080 PF16874 Glycosyl hydrolase family 36 C-terminal domain VA249_17090 PF02264 LamB porin VA249_17110 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA249_17110 PF00703 Glycosyl hydrolases family 2 VA249_17110 PF16353 Domain of unknown function(DUF4981) VA249_17110 PF02929 Beta galactosidase small chain VA249_17110 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA249_17120 PF00356 Bacterial regulatory proteins, lacI family VA249_17130 PF04403 Paraquat-inducible protein A VA249_17140 PF02470 MlaD protein VA249_17150 PF03886 ABC-type transport auxiliary lipoprotein component VA249_17190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_17200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VA249_17210 PF18073 Rubredoxin metal binding domain VA249_17220 PF06305 Lipopolysaccharide assembly protein A domain VA249_17230 PF00216 Bacterial DNA-binding protein VA249_17240 PF00575 S1 RNA binding domain VA249_17250 PF02224 Cytidylate kinase VA249_17260 PF01343 Peptidase family S49 VA249_17260 PF08496 Peptidase family S49 N-terminal VA249_17270 PF00106 short chain dehydrogenase VA249_17300 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA249_17300 PF14579 Helix-hairpin-helix motif VA249_17300 PF01336 OB-fold nucleic acid binding domain VA249_17300 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA249_17300 PF02811 PHP domain VA249_17310 PF01584 CheW-like domain VA249_17310 PF00072 Response regulator receiver domain VA249_17320 PF00480 ROK family VA249_17330 PF00224 Pyruvate kinase, barrel domain VA249_17330 PF02887 Pyruvate kinase, alpha/beta domain VA249_17340 PF01734 Patatin-like phospholipase VA249_17370 PF00367 phosphotransferase system, EIIB VA249_17370 PF02378 Phosphotransferase system, EIIC VA249_17380 PF01026 TatD related DNase VA249_17390 PF09115 DNA polymerase III, delta subunit, C terminal VA249_17400 PF02223 Thymidylate kinase VA249_17410 PF02618 YceG-like family VA249_17420 PF01063 Amino-transferase class IV VA249_17430 PF02801 Beta-ketoacyl synthase, C-terminal domain VA249_17430 PF00109 Beta-ketoacyl synthase, N-terminal domain VA249_17440 PF00550 Phosphopantetheine attachment site VA249_17460 PF00698 Acyl transferase domain VA249_17470 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VA249_17470 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VA249_17480 PF02504 Fatty acid synthesis protein VA249_17490 PF01783 Ribosomal L32p protein family VA249_17500 PF02620 Large ribosomal RNA subunit accumulation protein YceD VA249_17510 PF02545 Maf-like protein VA249_17520 PF00849 RNA pseudouridylate synthase VA249_17520 PF01479 S4 domain VA249_17530 PF12111 Polyribonucleotide phosphorylase C terminal VA249_17530 PF00575 S1 RNA binding domain VA249_17530 PF10150 Ribonuclease E/G family VA249_17540 PF00916 Sulfate permease family VA249_17540 PF01740 STAS domain VA249_17550 PF01451 Low molecular weight phosphotyrosine protein phosphatase VA249_17560 PF12557 Cob(I)alamin adenosyltransferase N terminal VA249_17560 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VA249_17580 PF05170 AsmA family VA249_17590 PF00485 Phosphoribulokinase / Uridine kinase family VA249_17600 PF10609 NUBPL iron-transfer P-loop NTPase VA249_17610 PF01588 Putative tRNA binding domain VA249_17610 PF09334 tRNA synthetases class I (M) VA249_17630 PF00392 Bacterial regulatory proteins, gntR family VA249_17630 PF07840 FadR C-terminal domain VA249_17640 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VA249_17650 PF02600 Disulfide bond formation protein DsbB VA249_17660 PF03695 Uncharacterised protein family (UPF0149) VA249_17660 PF02810 SEC-C motif VA249_17670 PF01207 Dihydrouridine synthase (Dus) VA249_17700 PF00990 Diguanylate cyclase, GGDEF domain VA249_17700 PF05230 MASE2 domain VA249_17710 PF00128 Alpha amylase, catalytic domain VA249_17710 PF02903 Alpha amylase, N-terminal ig-like domain VA249_17720 PF00005 ABC transporter VA249_17730 PF02653 Branched-chain amino acid transport system / permease component VA249_17750 PF04217 Protein of unknown function, DUF412 VA249_17760 PF00871 Acetokinase family VA249_17770 PF07085 DRTGG domain VA249_17770 PF01515 Phosphate acetyl/butaryl transferase VA249_17780 PF13194 Domain of unknown function (DUF4010) VA249_17790 PF13409 Glutathione S-transferase, N-terminal domain VA249_17800 PF00850 Histone deacetylase domain VA249_17810 PF13416 Bacterial extracellular solute-binding protein VA249_17820 PF00005 ABC transporter VA249_17820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_17830 PF00005 ABC transporter VA249_17830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_17840 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_17840 PF00528 Binding-protein-dependent transport system inner membrane component VA249_17850 PF00528 Binding-protein-dependent transport system inner membrane component VA249_17860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_17870 PF02391 MoaE protein VA249_17880 PF02597 ThiS family VA249_17890 PF01967 MoaC family VA249_17900 PF00994 Probable molybdopterin binding domain VA249_17910 PF06463 Molybdenum Cofactor Synthesis C VA249_17910 PF04055 Radical SAM superfamily VA249_17920 PF01933 Uncharacterised protein family UPF0052 VA249_17930 PF01627 Hpt domain VA249_17940 PF00072 Response regulator receiver domain VA249_17940 PF00158 Sigma-54 interaction domain VA249_17940 PF02954 Bacterial regulatory protein, Fis family VA249_17950 PF00271 Helicase conserved C-terminal domain VA249_17950 PF04851 Type III restriction enzyme, res subunit VA249_17950 PF02151 UvrB/uvrC motif VA249_17950 PF12344 Ultra-violet resistance protein B VA249_17950 PF17757 UvrB interaction domain VA249_17960 PF01228 Glycine radical VA249_17960 PF02901 Pyruvate formate lyase-like VA249_17970 PF02508 Rnf-Nqr subunit, membrane protein VA249_17980 PF04060 Putative Fe-S cluster VA249_17990 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VA249_17990 PF12838 4Fe-4S dicluster domain VA249_17990 PF13375 RnfC Barrel sandwich hybrid domain VA249_17990 PF10531 SLBB domain VA249_18000 PF03116 NQR2, RnfD, RnfE family VA249_18010 PF04205 FMN-binding domain VA249_18020 PF02508 Rnf-Nqr subunit, membrane protein VA249_18030 PF10576 Iron-sulfur binding domain of endonuclease III VA249_18030 PF00633 Helix-hairpin-helix motif VA249_18030 PF00730 HhH-GPD superfamily base excision DNA repair protein VA249_18040 PF02899 Phage integrase, N-terminal SAM-like domain VA249_18040 PF00589 Phage integrase family VA249_18090 PF13538 UvrD-like helicase C-terminal domain VA249_18090 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain VA249_18090 PF14490 Helix-hairpin-helix containing domain VA249_18110 PF00072 Response regulator receiver domain VA249_18110 PF09308 LuxQ, periplasmic VA249_18110 PF00512 His Kinase A (phospho-acceptor) domain VA249_18110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_18120 PF13737 Transposase DDE domain VA249_18140 PF13737 Transposase DDE domain VA249_18170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_18180 PF10952 Protein of unknown function (DUF2753) VA249_18190 PF00691 OmpA family VA249_18190 PF18393 MotY N-terminal domain VA249_18200 PF00929 Exonuclease VA249_18210 PF03553 Na+/H+ antiporter family VA249_18210 PF13726 Na+-H+ antiporter family VA249_18250 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_18260 PF00294 pfkB family carbohydrate kinase VA249_18270 PF00128 Alpha amylase, catalytic domain VA249_18280 PF00251 Glycosyl hydrolases family 32 N-terminal domain VA249_18280 PF08244 Glycosyl hydrolases family 32 C terminal VA249_18300 PF08402 TOBE domain VA249_18300 PF00005 ABC transporter VA249_18310 PF13419 Haloacid dehalogenase-like hydrolase VA249_18320 PF03633 Glycosyl hydrolase family 65, C-terminal domain VA249_18320 PF03632 Glycosyl hydrolase family 65 central catalytic domain VA249_18320 PF03636 Glycosyl hydrolase family 65, N-terminal domain VA249_18330 PF00528 Binding-protein-dependent transport system inner membrane component VA249_18340 PF00528 Binding-protein-dependent transport system inner membrane component VA249_18360 PF00356 Bacterial regulatory proteins, lacI family VA249_18460 PF00462 Glutaredoxin VA249_18470 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VA249_18470 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VA249_18500 PF00465 Iron-containing alcohol dehydrogenase VA249_18500 PF00171 Aldehyde dehydrogenase family VA249_18510 PF01914 MarC family integral membrane protein VA249_18520 PF00027 Cyclic nucleotide-binding domain VA249_18520 PF00520 Ion transport protein VA249_18530 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_18530 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA249_18540 PF03553 Na+/H+ antiporter family VA249_18570 PF04245 37-kD nucleoid-associated bacterial protein VA249_18580 PF07208 Protein of unknown function (DUF1414) VA249_18590 PF11893 Domain of unknown function (DUF3413) VA249_18590 PF00884 Sulfatase VA249_18600 PF00850 Histone deacetylase domain VA249_18610 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VA249_18610 PF13378 Enolase C-terminal domain-like VA249_18630 PF08666 SAF domain VA249_18630 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus VA249_18660 PF01131 DNA topoisomerase VA249_18660 PF01751 Toprim domain VA249_18670 PF00881 Nitroreductase family VA249_18680 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_18680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA249_18690 PF01343 Peptidase family S49 VA249_18700 PF17763 Glutaminase/Asparaginase C-terminal domain VA249_18700 PF00710 Asparaginase, N-terminal VA249_18710 PF07023 Protein of unknown function (DUF1315) VA249_18730 PF01641 SelR domain VA249_18740 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA249_18740 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA249_18750 PF01263 Aldose 1-epimerase VA249_18760 PF13847 Methyltransferase domain VA249_18790 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_18800 PF00873 AcrB/AcrD/AcrF family VA249_18810 PF00529 HlyD membrane-fusion protein of T1SS VA249_18810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_18850 PF07690 Major Facilitator Superfamily VA249_18860 PF03601 Conserved hypothetical protein 698 VA249_18880 PF13193 AMP-binding enzyme C-terminal domain VA249_18880 PF00501 AMP-binding enzyme VA249_18890 PF13378 Enolase C-terminal domain-like VA249_18900 PF00378 Enoyl-CoA hydratase/isomerase VA249_18910 PF12697 Alpha/beta hydrolase family VA249_18920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA249_18920 PF16582 Middle domain of thiamine pyrophosphate VA249_18920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_18930 PF00425 chorismate binding enzyme VA249_18940 PF00155 Aminotransferase class I and II VA249_18960 PF01966 HD domain VA249_18960 PF13286 Phosphohydrolase-associated domain VA249_19000 PF13145 PPIC-type PPIASE domain VA249_19010 PF00216 Bacterial DNA-binding protein VA249_19020 PF00004 ATPase family associated with various cellular activities (AAA) VA249_19020 PF05362 Lon protease (S16) C-terminal proteolytic domain VA249_19020 PF02190 ATP-dependent protease La (LON) substrate-binding domain VA249_19030 PF07724 AAA domain (Cdc48 subfamily) VA249_19030 PF06689 ClpX C4-type zinc finger VA249_19030 PF10431 C-terminal, D2-small domain, of ClpB protein VA249_19040 PF00574 Clp protease VA249_19050 PF05698 Bacterial trigger factor protein (TF) C-terminus VA249_19050 PF05697 Bacterial trigger factor protein (TF) VA249_19050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_19070 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VA249_19090 PF02386 Cation transport protein VA249_19100 PF02080 TrkA-C domain VA249_19100 PF02254 TrkA-N domain VA249_19110 PF00270 DEAD/DEAH box helicase VA249_19110 PF00271 Helicase conserved C-terminal domain VA249_19120 PF01595 Cyclin M transmembrane N-terminal domain VA249_19120 PF00571 CBS domain VA249_19120 PF03471 Transporter associated domain VA249_19150 PF02743 Cache domain VA249_19150 PF00672 HAMP domain VA249_19150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_19240 PF10711 Hypothetical protein (DUF2513) VA249_19290 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VA249_19290 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VA249_19300 PF07670 Nucleoside recognition VA249_19300 PF01773 Na+ dependent nucleoside transporter N-terminus VA249_19300 PF07662 Na+ dependent nucleoside transporter C-terminus VA249_19310 PF03466 LysR substrate binding domain VA249_19310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_19320 PF13406 Transglycosylase SLT domain VA249_19330 PF05166 YcgL domain VA249_19340 PF03775 Septum formation inhibitor MinC, C-terminal domain VA249_19340 PF05209 Septum formation inhibitor MinC, N-terminal domain VA249_19350 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VA249_19360 PF03776 Septum formation topological specificity factor MinE VA249_19370 PF01612 3'-5' exonuclease VA249_19370 PF00570 HRDC domain VA249_19380 PF00501 AMP-binding enzyme VA249_19380 PF13193 AMP-binding enzyme C-terminal domain VA249_19390 PF00561 alpha/beta hydrolase fold VA249_19420 PF00814 Glycoprotease family VA249_19430 PF13307 Helicase C-terminal domain VA249_19430 PF04851 Type III restriction enzyme, res subunit VA249_19440 PF00551 Formyl transferase VA249_19440 PF01842 ACT domain VA249_19450 PF06185 YecM protein VA249_19460 PF03485 Arginyl tRNA synthetase N terminal domain VA249_19460 PF05746 DALR anticodon binding domain VA249_19460 PF00750 tRNA synthetases class I (R) VA249_19490 PF07664 Ferrous iron transport protein B C terminus VA249_19490 PF17910 FeoB cytosolic helical domain VA249_19490 PF02421 Ferrous iron transport protein B VA249_19490 PF07670 Nucleoside recognition VA249_19500 PF04023 FeoA domain VA249_19510 PF02311 AraC-like ligand binding domain VA249_19510 PF12833 Helix-turn-helix domain VA249_19520 PF01297 Zinc-uptake complex component A periplasmic VA249_19530 PF00005 ABC transporter VA249_19540 PF00950 ABC 3 transport family VA249_19550 PF00549 CoA-ligase VA249_19550 PF02629 CoA binding domain VA249_19560 PF08442 ATP-grasp domain VA249_19560 PF00549 CoA-ligase VA249_19570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA249_19570 PF00364 Biotin-requiring enzyme VA249_19570 PF02817 e3 binding domain VA249_19580 PF16078 2-oxoglutarate dehydrogenase N-terminus VA249_19580 PF16870 2-oxoglutarate dehydrogenase C-terminal VA249_19580 PF00676 Dehydrogenase E1 component VA249_19580 PF02779 Transketolase, pyrimidine binding domain VA249_19590 PF13085 2Fe-2S iron-sulfur cluster binding domain VA249_19600 PF00890 FAD binding domain VA249_19600 PF02910 Fumarate reductase flavoprotein C-term VA249_19610 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VA249_19620 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VA249_19630 PF00285 Citrate synthase, C-terminal domain VA249_19640 PF01784 NIF3 (NGG1p interacting factor 3) VA249_19660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA249_19660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA249_19660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA249_19660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA249_19670 PF03925 SeqA protein C-terminal domain VA249_19670 PF17206 SeqA protein N-terminal domain VA249_19680 PF12697 Alpha/beta hydrolase family VA249_19700 PF00258 Flavodoxin VA249_19710 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA249_19710 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA249_19720 PF01475 Ferric uptake regulator family VA249_19730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VA249_19730 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA249_19740 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VA249_19740 PF00367 phosphotransferase system, EIIB VA249_19740 PF02378 Phosphotransferase system, EIIC VA249_19750 PF01979 Amidohydrolase family VA249_19760 PF01047 MarR family VA249_19760 PF00480 ROK family VA249_19770 PF02254 TrkA-N domain VA249_19770 PF00999 Sodium/hydrogen exchanger family VA249_19780 PF00733 Asparagine synthase VA249_19780 PF13537 Glutamine amidotransferase domain VA249_19790 PF02357 Transcription termination factor nusG VA249_19800 PF00854 POT family VA249_19810 PF00762 Ferrochelatase VA249_19820 PF05191 Adenylate kinase, active site lid VA249_19830 PF00183 Hsp90 protein VA249_19830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_19840 PF00486 Transcriptional regulatory protein, C terminal VA249_19850 PF17323 Trans-membrane regulatory protein ToxS VA249_19880 PF12850 Calcineurin-like phosphoesterase superfamily domain VA249_19890 PF08338 Domain of unknown function (DUF1731) VA249_19890 PF01370 NAD dependent epimerase/dehydratase family VA249_19900 PF00106 short chain dehydrogenase VA249_19910 PF00085 Thioredoxin VA249_19920 PF01145 SPFH domain / Band 7 family VA249_19920 PF16200 C-terminal region of band_7 VA249_19930 PF01957 NfeD-like C-terminal, partner-binding VA249_19960 PF03573 outer membrane porin, OprD family VA249_19970 PF00533 BRCA1 C Terminus (BRCT) domain VA249_19970 PF01653 NAD-dependent DNA ligase adenylation domain VA249_19970 PF03120 NAD-dependent DNA ligase OB-fold domain VA249_19970 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VA249_19970 PF12826 Helix-hairpin-helix motif VA249_19980 PF04354 ZipA, C-terminal FtsZ-binding domain VA249_20000 PF00291 Pyridoxal-phosphate dependent enzyme VA249_20010 PF00381 PTS HPr component phosphorylation site VA249_20020 PF05524 PEP-utilising enzyme, N-terminal VA249_20020 PF00391 PEP-utilising enzyme, mobile domain VA249_20020 PF02896 PEP-utilising enzyme, TIM barrel domain VA249_20030 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VA249_20040 PF00669 Bacterial flagellin N-terminal helical region VA249_20040 PF07196 Flagellin hook IN motif VA249_20040 PF00700 Bacterial flagellin C-terminal helical region VA249_20050 PF00700 Bacterial flagellin C-terminal helical region VA249_20050 PF07196 Flagellin hook IN motif VA249_20050 PF00669 Bacterial flagellin N-terminal helical region VA249_20070 PF07196 Flagellin hook IN motif VA249_20070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_20080 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VA249_20080 PF10135 Rod binding protein VA249_20090 PF02119 Flagellar P-ring protein VA249_20100 PF02107 Flagellar L-ring protein VA249_20110 PF00460 Flagella basal body rod protein VA249_20110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_20120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_20120 PF00460 Flagella basal body rod protein VA249_20130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_20130 PF07559 Flagellar basal body protein FlaE VA249_20130 PF00460 Flagella basal body rod protein VA249_20140 PF03963 Flagellar hook capping protein - N-terminal region VA249_20140 PF13861 FlgD Tudor-like domain VA249_20140 PF13860 FlgD Ig-like domain VA249_20150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_20150 PF00460 Flagella basal body rod protein VA249_20160 PF00460 Flagella basal body rod protein VA249_20170 PF01739 CheR methyltransferase, SAM binding domain VA249_20170 PF03705 CheR methyltransferase, all-alpha domain VA249_20180 PF01584 CheW-like domain VA249_20180 PF00072 Response regulator receiver domain VA249_20260 PF01389 OmpA-like transmembrane domain VA249_20260 PF00691 OmpA family VA249_20270 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA249_20280 PF00403 Heavy-metal-associated domain VA249_20320 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VA249_20320 PF03173 Putative carbohydrate binding domain VA249_20320 PF00728 Glycosyl hydrolase family 20, catalytic domain VA249_20320 PF02838 Glycosyl hydrolase family 20, domain 2 VA249_20340 PF01713 Smr domain VA249_20350 PF00849 RNA pseudouridylate synthase VA249_20350 PF01479 S4 domain VA249_20360 PF04073 Aminoacyl-tRNA editing domain VA249_20370 PF02872 5'-nucleotidase, C-terminal domain VA249_20370 PF00149 Calcineurin-like phosphoesterase VA249_20380 PF00793 DAHP synthetase I family VA249_20390 PF13369 Transglutaminase-like superfamily VA249_20400 PF04247 Invasion gene expression up-regulator, SirB VA249_20410 PF13847 Methyltransferase domain VA249_20410 PF17827 PrmC N-terminal domain VA249_20420 PF03462 PCRF domain VA249_20420 PF00472 RF-1 domain VA249_20430 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VA249_20430 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VA249_20430 PF01488 Shikimate / quinate 5-dehydrogenase VA249_20440 PF03550 Outer membrane lipoprotein LolB VA249_20450 PF00288 GHMP kinases N terminal domain VA249_20450 PF08544 GHMP kinases C terminal VA249_20460 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VA249_20460 PF14572 Phosphoribosyl synthetase-associated domain VA249_20470 PF01195 Peptidyl-tRNA hydrolase VA249_20480 PF01926 50S ribosome-binding GTPase VA249_20480 PF06071 Protein of unknown function (DUF933) VA249_20490 PF01494 FAD binding domain VA249_20500 PF01938 TRAM domain VA249_20500 PF00919 Uncharacterized protein family UPF0004 VA249_20500 PF04055 Radical SAM superfamily VA249_20510 PF02562 PhoH-like protein VA249_20520 PF02130 Uncharacterized protein family UPF0054 VA249_20530 PF03471 Transporter associated domain VA249_20530 PF00571 CBS domain VA249_20540 PF00795 Carbon-nitrogen hydrolase VA249_20550 PF07295 Zinc-ribbon containing domain VA249_20560 PF08264 Anticodon-binding domain of tRNA VA249_20560 PF13603 Leucyl-tRNA synthetase, Domain 2 VA249_20560 PF00133 tRNA synthetases class I (I, L, M and V) VA249_20570 PF04390 Lipopolysaccharide-assembly VA249_20580 PF06144 DNA polymerase III, delta subunit VA249_20580 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VA249_20600 PF02590 Predicted SPOUT methyltransferase VA249_20610 PF03717 Penicillin-binding Protein dimerisation domain VA249_20610 PF00905 Penicillin binding protein transpeptidase domain VA249_20620 PF01098 Cell cycle protein VA249_20630 PF03330 Lytic transglycolase VA249_20630 PF05036 Sporulation related domain VA249_20640 PF00768 D-alanyl-D-alanine carboxypeptidase VA249_20640 PF07943 Penicillin-binding protein 5, C-terminal domain VA249_20650 PF04359 Protein of unknown function (DUF493) VA249_20660 PF03099 Biotin/lipoate A/B protein ligase family VA249_20670 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VA249_20670 PF04055 Radical SAM superfamily VA249_20680 PF00464 Serine hydroxymethyltransferase VA249_20690 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VA249_20690 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VA249_20700 PF00128 Alpha amylase, catalytic domain VA249_20700 PF16657 Maltogenic Amylase, C-terminal domain VA249_20710 PF00356 Bacterial regulatory proteins, lacI family VA249_20730 PF09383 NIL domain VA249_20730 PF00005 ABC transporter VA249_20740 PF00528 Binding-protein-dependent transport system inner membrane component VA249_20750 PF03180 NLPA lipoprotein VA249_20760 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VA249_20770 PF07348 Syd protein (SUKH-2) VA249_20780 PF14489 QueF-like protein VA249_20780 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VA249_20800 PF00990 Diguanylate cyclase, GGDEF domain VA249_20810 PF11892 Domain of unknown function (DUF3412) VA249_20810 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VA249_20810 PF03641 Possible lysine decarboxylase VA249_20820 PF01367 5'-3' exonuclease, C-terminal SAM fold VA249_20820 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VA249_20830 PF01728 FtsJ-like methyltransferase VA249_20830 PF18125 RlmM ferredoxin-like domain VA249_20840 PF04241 Protein of unknown function (DUF423) VA249_20860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_20860 PF03466 LysR substrate binding domain VA249_20880 PF02568 Thiamine biosynthesis protein (ThiI) VA249_20880 PF02926 THUMP domain VA249_20890 PF13677 Membrane MotB of proton-channel complex MotA/MotB VA249_20890 PF00691 OmpA family VA249_20900 PF01618 MotA/TolQ/ExbB proton channel family VA249_20910 PF02609 Exonuclease VII small subunit VA249_20920 PF00348 Polyprenyl synthetase VA249_20930 PF02780 Transketolase, C-terminal domain VA249_20930 PF02779 Transketolase, pyrimidine binding domain VA249_20930 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VA249_20940 PF04608 Phosphatidylglycerophosphatase A VA249_20950 PF00586 AIR synthase related protein, N-terminal domain VA249_20950 PF02769 AIR synthase related protein, C-terminal domain VA249_20960 PF01029 NusB family VA249_20970 PF00885 6,7-dimethyl-8-ribityllumazine synthase VA249_20980 PF00925 GTP cyclohydrolase II VA249_20980 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VA249_20990 PF00677 Lumazine binding domain VA249_21000 PF01872 RibD C-terminal domain VA249_21000 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_21010 PF03477 ATP cone domain VA249_21020 PF00171 Aldehyde dehydrogenase family VA249_21030 PF01472 PUA domain VA249_21030 PF00696 Amino acid kinase family VA249_21040 PF07417 Sigma factor-binding transcriptional regulator Crl VA249_21050 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VA249_21060 PF00156 Phosphoribosyl transferase domain VA249_21070 PF00860 Permease family VA249_21080 PF07687 Peptidase dimerisation domain VA249_21080 PF01546 Peptidase family M20/M25/M40 VA249_21120 PF02769 AIR synthase related protein, C-terminal domain VA249_21120 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VA249_21120 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VA249_21130 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_21130 PF01464 Transglycosylase SLT domain VA249_21150 PF14437 MafB19-like deaminase VA249_21160 PF03806 AbgT putative transporter family VA249_21200 PF00114 Pilin (bacterial filament) VA249_21200 PF07963 Prokaryotic N-terminal methylation motif VA249_21210 PF00226 DnaJ domain VA249_21210 PF01556 DnaJ C terminal domain VA249_21210 PF00684 DnaJ central domain VA249_21220 PF00012 Hsp70 protein VA249_21230 PF00375 Sodium:dicarboxylate symporter family VA249_21240 PF01025 GrpE VA249_21250 PF01513 ATP-NAD kinase VA249_21260 PF02463 RecF/RecN/SMC N terminal domain VA249_21270 PF04355 SmpA / OmlA family VA249_21280 PF03658 RnfH family Ubiquitin VA249_21290 PF03364 Polyketide cyclase / dehydrase and lipid transport VA249_21300 PF01668 SmpB protein VA249_21310 PF13356 Arm DNA-binding domain VA249_21310 PF00589 Phage integrase family VA249_21340 PF12008 Type I restriction and modification enzyme - subunit R C terminal VA249_21340 PF18766 SWI2/SNF2 ATPase VA249_21340 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VA249_21360 PF02384 N-6 DNA Methylase VA249_21360 PF12161 HsdM N-terminal domain VA249_21420 PF02384 N-6 DNA Methylase VA249_21420 PF12161 HsdM N-terminal domain VA249_21440 PF11867 Domain of unknown function (DUF3387) VA249_21440 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VA249_21440 PF18766 SWI2/SNF2 ATPase VA249_21470 PF02384 N-6 DNA Methylase VA249_21470 PF12161 HsdM N-terminal domain VA249_21560 PF00145 C-5 cytosine-specific DNA methylase VA249_21610 PF00202 Aminotransferase class-III VA249_21620 PF01053 Cys/Met metabolism PLP-dependent enzyme VA249_21630 PF01053 Cys/Met metabolism PLP-dependent enzyme VA249_21640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_21640 PF03466 LysR substrate binding domain VA249_21650 PF01266 FAD dependent oxidoreductase VA249_21670 PF01235 Sodium:alanine symporter family VA249_21680 PF01184 GPR1/FUN34/yaaH family VA249_21690 PF02540 NAD synthase VA249_21690 PF00958 GMP synthase C terminal domain VA249_21690 PF00117 Glutamine amidotransferase class-I VA249_21700 PF00478 IMP dehydrogenase / GMP reductase domain VA249_21700 PF00571 CBS domain VA249_21710 PF13742 OB-fold nucleic acid binding domain VA249_21710 PF02601 Exonuclease VII, large subunit VA249_21740 PF01926 50S ribosome-binding GTPase VA249_21740 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VA249_21750 PF13360 PQQ-like domain VA249_21760 PF09976 Tetratricopeptide repeat-like domain VA249_21770 PF03129 Anticodon binding domain VA249_21770 PF13393 Histidyl-tRNA synthetase VA249_21780 PF04551 GcpE protein VA249_21790 PF13464 Domain of unknown function (DUF4115) VA249_21800 PF04055 Radical SAM superfamily VA249_21810 PF00334 Nucleoside diphosphate kinase VA249_21820 PF00883 Cytosol aminopeptidase family, catalytic domain VA249_21820 PF12404 Peptidase VA249_21830 PF04384 Iron-sulphur cluster assembly VA249_21840 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_21850 PF00012 Hsp70 protein VA249_21860 PF00226 DnaJ domain VA249_21860 PF07743 HSCB C-terminal oligomerisation domain VA249_21870 PF01521 Iron-sulphur cluster biosynthesis VA249_21880 PF01592 NifU-like N terminal domain VA249_21890 PF00266 Aminotransferase class-V VA249_21900 PF02082 Transcriptional regulator VA249_21910 PF00588 SpoU rRNA Methylase family VA249_21920 PF00459 Inositol monophosphatase family VA249_21930 PF07549 SecD/SecF GG Motif VA249_21930 PF02355 Protein export membrane protein VA249_21940 PF13721 SecD export protein N-terminal TM region VA249_21940 PF02355 Protein export membrane protein VA249_21940 PF07549 SecD/SecF GG Motif VA249_21950 PF02699 Preprotein translocase subunit VA249_21960 PF01702 Queuine tRNA-ribosyltransferase VA249_21970 PF02547 Queuosine biosynthesis protein VA249_21990 PF00571 CBS domain VA249_22000 PF00463 Isocitrate lyase family VA249_22010 PF01274 Malate synthase VA249_22020 PF03466 LysR substrate binding domain VA249_22020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_22030 PF00578 AhpC/TSA family VA249_22030 PF10417 C-terminal domain of 1-Cys peroxiredoxin VA249_22040 PF03932 CutC family VA249_22050 PF03976 Polyphosphate kinase 2 (PPK2) VA249_22060 PF03466 LysR substrate binding domain VA249_22060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_22080 PF01895 PhoU domain VA249_22090 PF00005 ABC transporter VA249_22100 PF00528 Binding-protein-dependent transport system inner membrane component VA249_22110 PF00528 Binding-protein-dependent transport system inner membrane component VA249_22120 PF17941 Polyphosphate kinase C-terminal domain 1 VA249_22120 PF13089 Polyphosphate kinase N-terminal domain VA249_22120 PF13090 Polyphosphate kinase C-terminal domain 2 VA249_22120 PF02503 Polyphosphate kinase middle domain VA249_22130 PF02541 Ppx/GppA phosphatase family VA249_22140 PF12849 PBP superfamily domain VA249_22150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_22150 PF00512 His Kinase A (phospho-acceptor) domain VA249_22150 PF00989 PAS fold VA249_22150 PF11808 Phosphate regulon sensor protein PhoR VA249_22160 PF00072 Response regulator receiver domain VA249_22160 PF00486 Transcriptional regulatory protein, C terminal VA249_22170 PF04381 Putative exonuclease, RdgC VA249_22180 PF01136 Peptidase family U32 VA249_22180 PF16325 Peptidase family U32 C-terminal domain VA249_22190 PF00037 4Fe-4S binding domain VA249_22210 PF03411 Penicillin-insensitive murein endopeptidase VA249_22230 PF00004 ATPase family associated with various cellular activities (AAA) VA249_22230 PF07724 AAA domain (Cdc48 subfamily) VA249_22230 PF02861 Clp amino terminal domain, pathogenicity island component VA249_22230 PF10431 C-terminal, D2-small domain, of ClpB protein VA249_22230 PF17871 AAA lid domain VA249_22240 PF02578 Multi-copper polyphenol oxidoreductase laccase VA249_22250 PF00849 RNA pseudouridylate synthase VA249_22250 PF01479 S4 domain VA249_22260 PF13525 Outer membrane lipoprotein VA249_22270 PF01464 Transglycosylase SLT domain VA249_22280 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VA249_22290 PF00800 Prephenate dehydratase VA249_22290 PF01817 Chorismate mutase type II VA249_22300 PF01931 Protein of unknown function DUF84 VA249_22310 PF01371 Trp repressor protein VA249_22320 PF01464 Transglycosylase SLT domain VA249_22320 PF14718 Soluble lytic murein transglycosylase L domain VA249_22330 PF00005 ABC transporter VA249_22330 PF12848 ABC transporter VA249_22340 PF07238 PilZ domain VA249_22350 PF04225 Opacity-associated protein A LysM-like domain VA249_22350 PF01551 Peptidase family M23 VA249_22360 PF01817 Chorismate mutase type II VA249_22360 PF02153 Prephenate dehydrogenase VA249_22370 PF00793 DAHP synthetase I family VA249_22380 PF00933 Glycosyl hydrolase family 3 N terminal domain VA249_22390 PF03702 Anhydro-N-acetylmuramic acid kinase VA249_22400 PF01380 SIS domain VA249_22430 PF02554 Carbon starvation protein CstA VA249_22440 PF06580 Histidine kinase VA249_22440 PF07694 5TMR of 5TMR-LYT VA249_22450 PF06580 Histidine kinase VA249_22450 PF07694 5TMR of 5TMR-LYT VA249_22460 PF04397 LytTr DNA-binding domain VA249_22460 PF00072 Response regulator receiver domain VA249_22470 PF02401 LytB protein VA249_22480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_22490 PF01252 Signal peptidase (SPase) II VA249_22500 PF08264 Anticodon-binding domain of tRNA VA249_22500 PF06827 Zinc finger found in FPG and IleRS VA249_22500 PF00133 tRNA synthetases class I (I, L, M and V) VA249_22510 PF01687 Riboflavin kinase VA249_22510 PF06574 FAD synthetase VA249_22520 PF03023 Lipid II flippase MurJ VA249_22530 PF01649 Ribosomal protein S20 VA249_22540 PF01022 Bacterial regulatory protein, arsR family VA249_22550 PF03466 LysR substrate binding domain VA249_22550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_22570 PF02690 Na+/Pi-cotransporter VA249_22580 PF00303 Thymidylate synthase VA249_22590 PF01790 Prolipoprotein diacylglyceryl transferase VA249_22600 PF01925 Sulfite exporter TauE/SafE VA249_22610 PF00391 PEP-utilising enzyme, mobile domain VA249_22610 PF02896 PEP-utilising enzyme, TIM barrel domain VA249_22610 PF01590 GAF domain VA249_22610 PF05524 PEP-utilising enzyme, N-terminal VA249_22620 PF00293 NUDIX domain VA249_22630 PF02976 DNA mismatch repair enzyme MutH VA249_22650 PF00248 Aldo/keto reductase family VA249_22670 PF02954 Bacterial regulatory protein, Fis family VA249_22670 PF00072 Response regulator receiver domain VA249_22670 PF00158 Sigma-54 interaction domain VA249_22680 PF00152 tRNA synthetases class II (D, K and N) VA249_22680 PF01336 OB-fold nucleic acid binding domain VA249_22690 PF03462 PCRF domain VA249_22690 PF00472 RF-1 domain VA249_22700 PF01368 DHH family VA249_22700 PF02272 DHHA1 domain VA249_22700 PF17768 RecJ OB domain VA249_22710 PF01368 DHH family VA249_22710 PF17768 RecJ OB domain VA249_22710 PF02272 DHHA1 domain VA249_22720 PF10411 Disulfide bond isomerase protein N-terminus VA249_22720 PF13098 Thioredoxin-like domain VA249_22730 PF00589 Phage integrase family VA249_22730 PF02899 Phage integrase, N-terminal SAM-like domain VA249_22740 PF00258 Flavodoxin VA249_22750 PF05525 Branched-chain amino acid transport protein VA249_22760 PF05175 Methyltransferase small domain VA249_22770 PF00270 DEAD/DEAH box helicase VA249_22770 PF00271 Helicase conserved C-terminal domain VA249_22780 PF03883 Peroxide stress protein YaaA VA249_22840 PF01235 Sodium:alanine symporter family VA249_22870 PF03167 Uracil DNA glycosylase superfamily VA249_22880 PF01261 Xylose isomerase-like TIM barrel VA249_22890 PF01228 Glycine radical VA249_22900 PF14821 Threonine synthase N terminus VA249_22900 PF00291 Pyridoxal-phosphate dependent enzyme VA249_22910 PF08544 GHMP kinases C terminal VA249_22910 PF00288 GHMP kinases N terminal domain VA249_22920 PF13840 ACT domain VA249_22920 PF01842 ACT domain VA249_22920 PF00696 Amino acid kinase family VA249_22920 PF00742 Homoserine dehydrogenase VA249_22920 PF03447 Homoserine dehydrogenase, NAD binding domain VA249_22940 PF03737 Aldolase/RraA VA249_22960 PF00072 Response regulator receiver domain VA249_22960 PF00486 Transcriptional regulatory protein, C terminal VA249_22980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_22980 PF00512 His Kinase A (phospho-acceptor) domain VA249_22980 PF18415 Histidine kinase receptor ArcB trans-membrane domain VA249_22980 PF01627 Hpt domain VA249_22980 PF00989 PAS fold VA249_22980 PF00072 Response regulator receiver domain VA249_22990 PF04055 Radical SAM superfamily VA249_22990 PF16199 Radical_SAM C-terminal domain VA249_23000 PF01645 Conserved region in glutamate synthase VA249_23000 PF04898 Glutamate synthase central domain VA249_23000 PF01493 GXGXG motif VA249_23000 PF00310 Glutamine amidotransferases class-II VA249_23010 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_23010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA249_23020 PF01493 GXGXG motif VA249_23020 PF01645 Conserved region in glutamate synthase VA249_23020 PF00310 Glutamine amidotransferases class-II VA249_23020 PF04898 Glutamate synthase central domain VA249_23030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA249_23030 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_23050 PF01048 Phosphorylase superfamily VA249_23070 PF01497 Periplasmic binding protein VA249_23080 PF03458 UPF0126 domain VA249_23090 PF03466 LysR substrate binding domain VA249_23090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_23100 PF01925 Sulfite exporter TauE/SafE VA249_23110 PF02142 MGS-like domain VA249_23110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VA249_23110 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VA249_23120 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VA249_23120 PF00117 Glutamine amidotransferase class-I VA249_23130 PF05173 Dihydrodipicolinate reductase, C-terminus VA249_23130 PF01113 Dihydrodipicolinate reductase, N-terminus VA249_23140 PF00293 NUDIX domain VA249_23150 PF02810 SEC-C motif VA249_23150 PF07517 SecA DEAD-like domain VA249_23150 PF01043 SecA preprotein cross-linking domain VA249_23150 PF07516 SecA Wing and Scaffold domain VA249_23170 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VA249_23180 PF12327 FtsZ family, C-terminal domain VA249_23180 PF00091 Tubulin/FtsZ family, GTPase domain VA249_23190 PF02491 SHS2 domain inserted in FTSA VA249_23200 PF08478 POTRA domain, FtsQ-type VA249_23200 PF03799 Cell division protein FtsQ VA249_23210 PF01225 Mur ligase family, catalytic domain VA249_23210 PF02875 Mur ligase family, glutamate ligase domain VA249_23210 PF08245 Mur ligase middle domain VA249_23220 PF04101 Glycosyltransferase family 28 C-terminal domain VA249_23220 PF03033 Glycosyltransferase family 28 N-terminal domain VA249_23230 PF01098 Cell cycle protein VA249_23240 PF08245 Mur ligase middle domain VA249_23240 PF02875 Mur ligase family, glutamate ligase domain VA249_23250 PF00953 Glycosyl transferase family 4 VA249_23250 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VA249_23260 PF01225 Mur ligase family, catalytic domain VA249_23260 PF02875 Mur ligase family, glutamate ligase domain VA249_23260 PF08245 Mur ligase middle domain VA249_23270 PF01225 Mur ligase family, catalytic domain VA249_23270 PF02875 Mur ligase family, glutamate ligase domain VA249_23270 PF08245 Mur ligase middle domain VA249_23280 PF03717 Penicillin-binding Protein dimerisation domain VA249_23280 PF00905 Penicillin binding protein transpeptidase domain VA249_23290 PF04999 Cell division protein FtsL VA249_23300 PF01795 MraW methylase family VA249_23320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_23330 PF04348 LppC putative lipoprotein VA249_23340 PF02021 Uncharacterised protein family UPF0102 VA249_23350 PF13580 SIS domain VA249_23360 PF04972 BON domain VA249_23370 PF04386 Stringent starvation protein B VA249_23380 PF00043 Glutathione S-transferase, C-terminal domain VA249_23380 PF02798 Glutathione S-transferase, N-terminal domain VA249_23390 PF02167 Cytochrome C1 family VA249_23400 PF00033 Cytochrome b/b6/petB VA249_23400 PF00032 Cytochrome b(C-terminal)/b6/petD VA249_23410 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VA249_23410 PF00355 Rieske [2Fe-2S] domain VA249_23420 PF00380 Ribosomal protein S9/S16 VA249_23430 PF00572 Ribosomal protein L13 VA249_23440 PF03969 AFG1-like ATPase VA249_23450 PF06295 Protein of unknown function (DUF1043) VA249_23460 PF00595 PDZ domain VA249_23470 PF13180 PDZ domain VA249_23480 PF03989 DNA gyrase C-terminal domain, beta-propeller VA249_23480 PF00521 DNA gyrase/topoisomerase IV, subunit A VA249_23490 PF00986 DNA gyrase B subunit, carboxyl terminus VA249_23490 PF00204 DNA gyrase B VA249_23490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_23490 PF01751 Toprim domain VA249_23500 PF05728 Uncharacterised protein family (UPF0227) VA249_23510 PF00149 Calcineurin-like phosphoesterase VA249_23520 PF06853 Protein of unknown function (DUF1249) VA249_23530 PF00293 NUDIX domain VA249_23540 PF02321 Outer membrane efflux protein VA249_23550 PF00294 pfkB family carbohydrate kinase VA249_23550 PF01467 Cytidylyltransferase-like VA249_23560 PF08335 GlnD PII-uridylyltransferase VA249_23560 PF03710 Glutamate-ammonia ligase adenylyltransferase VA249_23570 PF02743 Cache domain VA249_23570 PF00672 HAMP domain VA249_23570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_23580 PF01928 CYTH domain VA249_23590 PF01865 Protein of unknown function DUF47 VA249_23600 PF01384 Phosphate transporter family VA249_23610 PF08239 Bacterial SH3 domain VA249_23630 PF13401 AAA domain VA249_23630 PF01471 Putative peptidoglycan binding domain VA249_23640 PF01966 HD domain VA249_23640 PF12627 Probable RNA and SrmB- binding site of polymerase A VA249_23640 PF01743 Poly A polymerase head domain VA249_23650 PF02673 Bacitracin resistance protein BacA VA249_23660 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VA249_23670 PF02152 Dihydroneopterin aldolase VA249_23680 PF02660 Glycerol-3-phosphate acyltransferase VA249_23690 PF02660 Glycerol-3-phosphate acyltransferase VA249_23700 PF00561 alpha/beta hydrolase fold VA249_23710 PF00814 Glycoprotease family VA249_23720 PF01165 Ribosomal protein S21 VA249_23730 PF09424 Yqey-like protein VA249_23740 PF08278 DNA primase DnaG DnaB-binding VA249_23740 PF10410 DnaB-helicase binding domain of primase VA249_23740 PF08275 DNA primase catalytic core, N-terminal domain VA249_23740 PF01807 CHC2 zinc finger VA249_23750 PF00140 Sigma-70 factor, region 1.2 VA249_23750 PF04545 Sigma-70, region 4 VA249_23750 PF04539 Sigma-70 region 3 VA249_23750 PF04546 Sigma-70, non-essential region VA249_23750 PF03979 Sigma-70 factor, region 1.1 VA249_23750 PF04542 Sigma-70 region 2 VA249_23770 PF01380 SIS domain VA249_23780 PF00455 DeoR C terminal sensor domain VA249_23780 PF08220 DeoR-like helix-turn-helix domain VA249_23790 PF02887 Pyruvate kinase, alpha/beta domain VA249_23790 PF00224 Pyruvate kinase, barrel domain VA249_23810 PF00990 Diguanylate cyclase, GGDEF domain VA249_23810 PF07694 5TMR of 5TMR-LYT VA249_23820 PF10369 Small subunit of acetolactate synthase VA249_23830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_23830 PF00205 Thiamine pyrophosphate enzyme, central domain VA249_23830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA249_23840 PF00501 AMP-binding enzyme VA249_23850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_23850 PF03466 LysR substrate binding domain VA249_23870 PF01569 PAP2 superfamily VA249_23890 PF08502 LeuA allosteric (dimerisation) domain VA249_23890 PF00682 HMGL-like VA249_23900 PF00180 Isocitrate/isopropylmalate dehydrogenase VA249_23910 PF00330 Aconitase family (aconitate hydratase) VA249_23920 PF00694 Aconitase C-terminal domain VA249_23940 PF00226 DnaJ domain VA249_23940 PF05099 Tellurite resistance protein TerB VA249_23950 PF04453 LPS transport system D VA249_23950 PF03968 OstA-like protein VA249_23960 PF09312 SurA N-terminal domain VA249_23970 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VA249_23980 PF00398 Ribosomal RNA adenine dimethylase VA249_23990 PF04379 ApaG domain VA249_24000 PF00149 Calcineurin-like phosphoesterase VA249_24010 PF00186 Dihydrofolate reductase VA249_24020 PF12821 Threonine/Serine exporter, ThrE VA249_24030 PF06738 Putative threonine/serine exporter VA249_24040 PF01926 50S ribosome-binding GTPase VA249_24040 PF01018 GTP1/OBG VA249_24050 PF01016 Ribosomal L27 protein VA249_24060 PF00829 Ribosomal prokaryotic L21 protein VA249_24070 PF00348 Polyprenyl synthetase VA249_24090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VA249_24090 PF00056 lactate/malate dehydrogenase, NAD binding domain VA249_24100 PF01316 Arginine repressor, DNA binding domain VA249_24100 PF02863 Arginine repressor, C-terminal domain VA249_24110 PF16868 NMT1-like family VA249_24140 PF00005 ABC transporter VA249_24150 PF00528 Binding-protein-dependent transport system inner membrane component VA249_24170 PF02441 Flavoprotein VA249_24180 PF08245 Mur ligase middle domain VA249_24180 PF01225 Mur ligase family, catalytic domain VA249_24180 PF02875 Mur ligase family, glutamate ligase domain VA249_24190 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VA249_24200 PF00719 Inorganic pyrophosphatase VA249_24210 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VA249_24220 PF04357 TamB, inner membrane protein subunit of TAM complex VA249_24230 PF01103 Surface antigen VA249_24230 PF07244 Surface antigen variable number repeat VA249_24230 PF17243 POTRA domain TamA domain 1 VA249_24240 PF01625 Peptide methionine sulfoxide reductase VA249_24260 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VA249_24290 PF00005 ABC transporter VA249_24340 PF03600 Citrate transporter VA249_24340 PF02080 TrkA-C domain VA249_24350 PF00009 Elongation factor Tu GTP binding domain VA249_24360 PF01507 Phosphoadenosine phosphosulfate reductase family VA249_24370 PF14824 Sirohaem biosynthesis protein central VA249_24370 PF10414 Sirohaem synthase dimerisation region VA249_24370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_24380 PF00149 Calcineurin-like phosphoesterase VA249_24380 PF02872 5'-nucleotidase, C-terminal domain VA249_24400 PF03880 DbpA RNA binding domain VA249_24400 PF00270 DEAD/DEAH box helicase VA249_24400 PF00271 Helicase conserved C-terminal domain VA249_24410 PF13673 Acetyltransferase (GNAT) domain VA249_24430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_24430 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA249_24450 PF01196 Ribosomal protein L17 VA249_24460 PF01000 RNA polymerase Rpb3/RpoA insert domain VA249_24460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VA249_24460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VA249_24470 PF00163 Ribosomal protein S4/S9 N-terminal domain VA249_24470 PF01479 S4 domain VA249_24480 PF00411 Ribosomal protein S11 VA249_24490 PF00416 Ribosomal protein S13/S18 VA249_24500 PF00344 SecY translocase VA249_24510 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VA249_24520 PF00327 Ribosomal protein L30p/L7e VA249_24530 PF00333 Ribosomal protein S5, N-terminal domain VA249_24530 PF03719 Ribosomal protein S5, C-terminal domain VA249_24540 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VA249_24550 PF00347 Ribosomal protein L6 VA249_24560 PF00410 Ribosomal protein S8 VA249_24570 PF00253 Ribosomal protein S14p/S29e VA249_24580 PF00281 Ribosomal protein L5 VA249_24580 PF00673 ribosomal L5P family C-terminus VA249_24590 PF00467 KOW motif VA249_24590 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VA249_24600 PF00238 Ribosomal protein L14p/L23e VA249_24610 PF00366 Ribosomal protein S17 VA249_24620 PF00831 Ribosomal L29 protein VA249_24630 PF00252 Ribosomal protein L16p/L10e VA249_24640 PF07650 KH domain VA249_24640 PF00189 Ribosomal protein S3, C-terminal domain VA249_24650 PF00237 Ribosomal protein L22p/L17e VA249_24660 PF00203 Ribosomal protein S19 VA249_24670 PF00181 Ribosomal Proteins L2, RNA binding domain VA249_24670 PF03947 Ribosomal Proteins L2, C-terminal domain VA249_24680 PF00276 Ribosomal protein L23 VA249_24690 PF00573 Ribosomal protein L4/L1 family VA249_24700 PF00297 Ribosomal protein L3 VA249_24710 PF00338 Ribosomal protein S10p/S20e VA249_24720 PF01197 Ribosomal protein L31 VA249_24730 PF00271 Helicase conserved C-terminal domain VA249_24730 PF17764 3′ DNA-binding domain (3′BD) VA249_24730 PF18074 Primosomal protein N C-terminal domain VA249_24730 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VA249_24730 PF00270 DEAD/DEAH box helicase VA249_24740 PF00356 Bacterial regulatory proteins, lacI family VA249_24760 PF00227 Proteasome subunit VA249_24770 PF07724 AAA domain (Cdc48 subfamily) VA249_24770 PF00004 ATPase family associated with various cellular activities (AAA) VA249_24780 PF01040 UbiA prenyltransferase family VA249_24790 PF03737 Aldolase/RraA VA249_24800 PF06005 Cell division protein ZapB VA249_24810 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VA249_24820 PF00455 DeoR C terminal sensor domain VA249_24820 PF08220 DeoR-like helix-turn-helix domain VA249_24860 PF00121 Triosephosphate isomerase VA249_24870 PF01370 NAD dependent epimerase/dehydratase family VA249_24880 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VA249_24880 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VA249_24880 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VA249_24890 PF10996 Beta-Casp domain VA249_24890 PF00753 Metallo-beta-lactamase superfamily VA249_24890 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VA249_24900 PF00953 Glycosyl transferase family 4 VA249_24930 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VA249_24940 PF04321 RmlD substrate binding domain VA249_24950 PF00483 Nucleotidyl transferase VA249_24960 PF16363 GDP-mannose 4,6 dehydratase VA249_24970 PF00535 Glycosyl transferase family 2 VA249_25070 PF13358 DDE superfamily endonuclease VA249_25080 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VA249_25090 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_25100 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VA249_25100 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VA249_25100 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VA249_25110 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VA249_25110 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VA249_25170 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VA249_25190 PF06082 Exopolysaccharide biosynthesis protein YbjH VA249_25200 PF01370 NAD dependent epimerase/dehydratase family VA249_25230 PF03279 Bacterial lipid A biosynthesis acyltransferase VA249_25240 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VA249_25250 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VA249_25270 PF13439 Glycosyltransferase Family 4 VA249_25270 PF00534 Glycosyl transferases group 1 VA249_25300 PF02348 Cytidylyltransferase VA249_25310 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VA249_25310 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VA249_25320 PF00483 Nucleotidyl transferase VA249_25340 PF08666 SAF domain VA249_25340 PF03102 NeuB family VA249_25350 PF02350 UDP-N-acetylglucosamine 2-epimerase VA249_25360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VA249_25370 PF02719 Polysaccharide biosynthesis protein VA249_25390 PF01219 Prokaryotic diacylglycerol kinase VA249_25400 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VA249_25410 PF00535 Glycosyl transferase family 2 VA249_25420 PF13439 Glycosyltransferase Family 4 VA249_25420 PF00534 Glycosyl transferases group 1 VA249_25430 PF01467 Cytidylyltransferase-like VA249_25440 PF05686 Glycosyl transferase family 90 VA249_25460 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VA249_25460 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VA249_25460 PF06827 Zinc finger found in FPG and IleRS VA249_25480 PF00471 Ribosomal protein L33 VA249_25490 PF00830 Ribosomal L28 family VA249_25500 PF04002 RadC-like JAB domain VA249_25510 PF02441 Flavoprotein VA249_25510 PF04127 DNA / pantothenate metabolism flavoprotein VA249_25520 PF00440 Bacterial regulatory proteins, tetR family VA249_25530 PF03279 Bacterial lipid A biosynthesis acyltransferase VA249_25540 PF00156 Phosphoribosyl transferase domain VA249_25550 PF01138 3' exoribonuclease family, domain 1 VA249_25550 PF03725 3' exoribonuclease family, domain 2 VA249_25560 PF08340 Domain of unknown function (DUF1732) VA249_25560 PF03755 YicC-like family, N-terminal region VA249_25580 PF00892 EamA-like transporter family VA249_25600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_25600 PF00005 ABC transporter VA249_25610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_25610 PF00005 ABC transporter VA249_25620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_25630 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_25630 PF00528 Binding-protein-dependent transport system inner membrane component VA249_25640 PF00528 Binding-protein-dependent transport system inner membrane component VA249_25650 PF07715 TonB-dependent Receptor Plug Domain VA249_25650 PF00593 TonB dependent receptor VA249_25680 PF01618 MotA/TolQ/ExbB proton channel family VA249_25690 PF02472 Biopolymer transport protein ExbD/TolR VA249_25730 PF00625 Guanylate kinase VA249_25740 PF01192 RNA polymerase Rpb6 VA249_25750 PF13291 ACT domain VA249_25750 PF04607 Region found in RelA / SpoT proteins VA249_25750 PF02824 TGS domain VA249_25760 PF12105 SpoU, rRNA methylase, C-terminal VA249_25760 PF00588 SpoU rRNA Methylase family VA249_25770 PF00270 DEAD/DEAH box helicase VA249_25770 PF00271 Helicase conserved C-terminal domain VA249_25770 PF17191 RecG wedge domain VA249_25780 PF07676 WD40-like Beta Propeller Repeat VA249_25780 PF00326 Prolyl oligopeptidase family VA249_25790 PF00860 Permease family VA249_25800 PF00512 His Kinase A (phospho-acceptor) domain VA249_25800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_25800 PF00672 HAMP domain VA249_25810 PF00072 Response regulator receiver domain VA249_25810 PF00486 Transcriptional regulatory protein, C terminal VA249_25820 PF01272 Transcription elongation factor, GreA/GreB, C-term VA249_25820 PF03449 Transcription elongation factor, N-terminal VA249_25850 PF17674 HHH domain VA249_25850 PF00575 S1 RNA binding domain VA249_25850 PF09371 Tex-like protein N-terminal domain VA249_25850 PF16921 Tex protein YqgF-like domain VA249_25870 PF00561 alpha/beta hydrolase fold VA249_25890 PF00156 Phosphoribosyl transferase domain VA249_25900 PF01521 Iron-sulphur cluster biosynthesis VA249_25900 PF01106 NifU-like domain VA249_25910 PF00293 NUDIX domain VA249_25920 PF00459 Inositol monophosphatase family VA249_25930 PF01203 Type II secretion system (T2SS), protein N VA249_25940 PF04612 Type II secretion system (T2SS), protein M VA249_25950 PF05134 Type II secretion system (T2SS), protein L VA249_25950 PF12693 GspL periplasmic domain VA249_25960 PF03934 Type II secretion system (T2SS), protein K VA249_25970 PF07963 Prokaryotic N-terminal methylation motif VA249_25970 PF11612 Type II secretion system (T2SS), protein J VA249_25980 PF07963 Prokaryotic N-terminal methylation motif VA249_25980 PF02501 Type II secretion system (T2SS), protein I VA249_25990 PF12019 Type II transport protein GspH VA249_26000 PF07963 Prokaryotic N-terminal methylation motif VA249_26000 PF08334 Type II secretion system (T2SS), protein G VA249_26010 PF00482 Type II secretion system (T2SS), protein F VA249_26020 PF00437 Type II/IV secretion system protein VA249_26030 PF00263 Bacterial type II and III secretion system protein VA249_26030 PF03958 Bacterial type II/III secretion system short domain VA249_26040 PF11356 Type II secretion system protein C VA249_26050 PF01479 S4 domain VA249_26060 PF01430 Hsp33 protein VA249_26070 PF01293 Phosphoenolpyruvate carboxykinase VA249_26090 PF00583 Acetyltransferase (GNAT) family VA249_26090 PF09500 Putative thioesterase (yiiD_Cterm) VA249_26100 PF02580 D-Tyr-tRNA(Tyr) deacylase VA249_26110 PF03631 Virulence factor BrkB VA249_26140 PF03144 Elongation factor Tu domain 2 VA249_26140 PF00009 Elongation factor Tu GTP binding domain VA249_26140 PF00679 Elongation factor G C-terminus VA249_26150 PF00120 Glutamine synthetase, catalytic domain VA249_26150 PF03951 Glutamine synthetase, beta-Grasp domain VA249_26170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_26170 PF00512 His Kinase A (phospho-acceptor) domain VA249_26170 PF00989 PAS fold VA249_26180 PF00072 Response regulator receiver domain VA249_26180 PF02954 Bacterial regulatory protein, Fis family VA249_26180 PF00158 Sigma-54 interaction domain VA249_26200 PF03707 Bacterial signalling protein N terminal repeat VA249_26200 PF00990 Diguanylate cyclase, GGDEF domain VA249_26200 PF00563 EAL domain VA249_26210 PF00962 Adenosine/AMP deaminase VA249_26220 PF06969 HemN C-terminal domain VA249_26220 PF04055 Radical SAM superfamily VA249_26230 PF10675 Protein of unknown function (DUF2489) VA249_26240 PF04220 Der GTPase activator (YihI) VA249_26260 PF00034 Cytochrome c VA249_26270 PF01926 50S ribosome-binding GTPase VA249_26280 PF01367 5'-3' exonuclease, C-terminal SAM fold VA249_26280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VA249_26280 PF00476 DNA polymerase family A VA249_26280 PF01612 3'-5' exonuclease VA249_26300 PF00490 Delta-aminolevulinic acid dehydratase VA249_26310 PF01026 TatD related DNase VA249_26320 PF00902 Sec-independent protein translocase protein (TatC) VA249_26330 PF02416 mttA/Hcf106 family VA249_26340 PF02416 mttA/Hcf106 family VA249_26350 PF03109 ABC1 family VA249_26360 PF02036 SCP-2 sterol transfer family VA249_26370 PF01209 ubiE/COQ5 methyltransferase family VA249_26380 PF02646 RmuC family VA249_26400 PF03707 Bacterial signalling protein N terminal repeat VA249_26400 PF00563 EAL domain VA249_26400 PF00990 Diguanylate cyclase, GGDEF domain VA249_26420 PF10625 Universal stress protein B (UspB) VA249_26430 PF00210 Ferritin-like domain VA249_26440 PF00582 Universal stress protein family VA249_26450 PF00892 EamA-like transporter family VA249_26470 PF04445 Putative SAM-dependent methyltransferase VA249_26480 PF01037 Lrp/AsnC ligand binding domain VA249_26490 PF01432 Peptidase family M3 VA249_26500 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VA249_26510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_26510 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_26520 PF01081 KDPG and KHG aldolase VA249_26530 PF02447 GntP family permease VA249_26540 PF01202 Shikimate kinase VA249_26550 PF00920 Dehydratase family VA249_26560 PF00893 Small Multidrug Resistance protein VA249_26570 PF00893 Small Multidrug Resistance protein VA249_26580 PF03466 LysR substrate binding domain VA249_26580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_26590 PF00356 Bacterial regulatory proteins, lacI family VA249_26590 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA249_26600 PF00069 Protein kinase domain VA249_26670 PF00528 Binding-protein-dependent transport system inner membrane component VA249_26670 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_26680 PF00528 Binding-protein-dependent transport system inner membrane component VA249_26690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_26700 PF00005 ABC transporter VA249_26700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_26720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA249_26730 PF00580 UvrD/REP helicase N-terminal domain VA249_26730 PF13361 UvrD-like helicase C-terminal domain VA249_26740 PF08359 YsiA-like protein, C-terminal region VA249_26740 PF00440 Bacterial regulatory proteins, tetR family VA249_26750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_26760 PF00873 AcrB/AcrD/AcrF family VA249_26770 PF04380 Membrane fusogenic activity VA249_26780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VA249_26780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VA249_26790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_26790 PF03466 LysR substrate binding domain VA249_26810 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_26820 PF07369 Protein of unknown function (DUF1488) VA249_26830 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VA249_26830 PF08501 Shikimate dehydrogenase substrate binding domain VA249_26830 PF01488 Shikimate / quinate 5-dehydrogenase VA249_26840 PF01218 Coproporphyrinogen III oxidase VA249_26850 PF01300 Telomere recombination VA249_26860 PF00731 AIR carboxylase VA249_26870 PF02222 ATP-grasp domain VA249_26870 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VA249_26900 PF01396 Topoisomerase DNA binding C4 zinc finger VA249_26910 PF04361 Protein of unknown function (DUF494) VA249_26920 PF17782 DprA winged helix domain VA249_26920 PF02481 DNA recombination-mediator protein A VA249_26940 PF01327 Polypeptide deformylase VA249_26950 PF00551 Formyl transferase VA249_26950 PF02911 Formyl transferase, C-terminal domain VA249_26960 PF01189 16S rRNA methyltransferase RsmB/F VA249_26960 PF01029 NusB family VA249_26970 PF02080 TrkA-C domain VA249_26970 PF02254 TrkA-N domain VA249_26980 PF02386 Cation transport protein VA249_27000 PF03006 Haemolysin-III related VA249_27010 PF07070 SpoOM protein VA249_27030 PF06288 Protein of unknown function (DUF1040) VA249_27040 PF12801 4Fe-4S binding domain VA249_27040 PF13746 4Fe-4S dicluster domain VA249_27040 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VA249_27050 PF01636 Phosphotransferase enzyme family VA249_27060 PF01323 DSBA-like thioredoxin domain VA249_27070 PF01553 Acyltransferase VA249_27090 PF01078 Magnesium chelatase, subunit ChlI VA249_27090 PF13335 Magnesium chelatase, subunit ChlI C-terminal VA249_27100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA249_27100 PF00205 Thiamine pyrophosphate enzyme, central domain VA249_27100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA249_27120 PF01063 Amino-transferase class IV VA249_27130 PF00920 Dehydratase family VA249_27140 PF00585 C-terminal regulatory domain of Threonine dehydratase VA249_27140 PF00291 Pyridoxal-phosphate dependent enzyme VA249_27150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_27150 PF03466 LysR substrate binding domain VA249_27160 PF07690 Major Facilitator Superfamily VA249_27170 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_27170 PF12804 MobA-like NTP transferase domain VA249_27180 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VA249_27180 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VA249_27190 PF02874 ATP synthase alpha/beta family, beta-barrel domain VA249_27190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_27200 PF00231 ATP synthase VA249_27210 PF00306 ATP synthase alpha/beta chain, C terminal domain VA249_27210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_27210 PF02874 ATP synthase alpha/beta family, beta-barrel domain VA249_27220 PF00213 ATP synthase delta (OSCP) subunit VA249_27230 PF00430 ATP synthase B/B' CF(0) VA249_27240 PF00137 ATP synthase subunit C VA249_27250 PF00119 ATP synthase A chain VA249_27260 PF03899 ATP synthase I chain VA249_27270 PF02195 ParB-like nuclease domain VA249_27270 PF17762 HTH domain found in ParB protein VA249_27280 PF13614 AAA domain VA249_27290 PF02527 rRNA small subunit methyltransferase G VA249_27300 PF13932 GidA associated domain VA249_27300 PF01134 Glucose inhibited division protein A VA249_27310 PF00258 Flavodoxin VA249_27320 PF01926 50S ribosome-binding GTPase VA249_27320 PF12631 MnmE helical domain VA249_27320 PF10396 GTP-binding protein TrmE N-terminus VA249_27330 PF02096 60Kd inner membrane protein VA249_27330 PF14849 YidC periplasmic domain VA249_27340 PF00825 Ribonuclease P VA249_27350 PF00468 Ribosomal protein L34 VA249_27360 PF00005 ABC transporter VA249_27370 PF00528 Binding-protein-dependent transport system inner membrane component VA249_27380 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_27390 PF12833 Helix-turn-helix domain VA249_27400 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA249_27400 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA249_27420 PF00356 Bacterial regulatory proteins, lacI family VA249_27440 PF00528 Binding-protein-dependent transport system inner membrane component VA249_27450 PF00528 Binding-protein-dependent transport system inner membrane component VA249_27460 PF00232 Glycosyl hydrolase family 1 VA249_27470 PF00005 ABC transporter VA249_27470 PF08402 TOBE domain VA249_27480 PF00356 Bacterial regulatory proteins, lacI family VA249_27500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_27510 PF00528 Binding-protein-dependent transport system inner membrane component VA249_27520 PF00528 Binding-protein-dependent transport system inner membrane component VA249_27520 PF12911 N-terminal TM domain of oligopeptide transport permease C VA249_27530 PF00005 ABC transporter VA249_27530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_27540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA249_27540 PF00005 ABC transporter VA249_27560 PF00356 Bacterial regulatory proteins, lacI family VA249_27590 PF12833 Helix-turn-helix domain VA249_27600 PF01915 Glycosyl hydrolase family 3 C-terminal domain VA249_27600 PF00933 Glycosyl hydrolase family 3 N terminal domain VA249_27600 PF14310 Fibronectin type III-like domain VA249_27610 PF01554 MatE VA249_27620 PF03480 Bacterial extracellular solute-binding protein, family 7 VA249_27630 PF00849 RNA pseudouridylate synthase VA249_27660 PF17152 Periplasmic sensor domain VA249_27660 PF00990 Diguanylate cyclase, GGDEF domain VA249_27680 PF05656 Protein of unknown function (DUF805) VA249_27690 PF00756 Putative esterase VA249_27700 PF08240 Alcohol dehydrogenase GroES-like domain VA249_27700 PF00107 Zinc-binding dehydrogenase VA249_27710 PF00797 N-acetyltransferase VA249_27720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_27720 PF03466 LysR substrate binding domain VA249_27740 PF00326 Prolyl oligopeptidase family VA249_27750 PF01810 LysE type translocator VA249_27760 PF01037 Lrp/AsnC ligand binding domain VA249_27780 PF00893 Small Multidrug Resistance protein VA249_27810 PF03922 OmpW family VA249_27820 PF16868 NMT1-like family VA249_27850 PF13533 Biotin-lipoyl like VA249_27860 PF07690 Major Facilitator Superfamily VA249_27880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_27890 PF01810 LysE type translocator VA249_27900 PF02743 Cache domain VA249_27900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_27900 PF00672 HAMP domain VA249_28040 PF02581 Thiamine monophosphate synthase VA249_28050 PF02110 Hydroxyethylthiazole kinase family VA249_28060 PF03070 TENA/THI-4/PQQC family VA249_28070 PF09084 NMT1/THI5 like VA249_28080 PF00528 Binding-protein-dependent transport system inner membrane component VA249_28090 PF00005 ABC transporter VA249_28100 PF08543 Phosphomethylpyrimidine kinase VA249_28110 PF01523 Putative modulator of DNA gyrase VA249_28120 PF01523 Putative modulator of DNA gyrase VA249_28130 PF04013 Putative SAM-dependent RNA methyltransferase VA249_28180 PF10928 Protein of unknown function (DUF2810) VA249_28190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA249_28190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA249_28210 PF03009 Glycerophosphoryl diester phosphodiesterase family VA249_28220 PF00072 Response regulator receiver domain VA249_28220 PF00486 Transcriptional regulatory protein, C terminal VA249_28230 PF00072 Response regulator receiver domain VA249_28230 PF00486 Transcriptional regulatory protein, C terminal VA249_28240 PF00672 HAMP domain VA249_28240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_28240 PF00512 His Kinase A (phospho-acceptor) domain VA249_28240 PF16750 Sensor domain of 2-component histidine kinase VA249_28250 PF07715 TonB-dependent Receptor Plug Domain VA249_28250 PF00593 TonB dependent receptor VA249_28270 PF01618 MotA/TolQ/ExbB proton channel family VA249_28280 PF01618 MotA/TolQ/ExbB proton channel family VA249_28290 PF02472 Biopolymer transport protein ExbD/TolR VA249_28330 PF13609 Gram-negative porin VA249_28340 PF00326 Prolyl oligopeptidase family VA249_28340 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA249_28350 PF07690 Major Facilitator Superfamily VA249_28360 PF00491 Arginase family VA249_28370 PF17810 Arginine decarboxylase helical bundle domain VA249_28370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VA249_28370 PF17944 Arginine decarboxylase C-terminal helical extension VA249_28380 PF00753 Metallo-beta-lactamase superfamily VA249_28390 PF08443 RimK-like ATP-grasp domain VA249_28390 PF18030 RimK PreATP-grasp domain VA249_28400 PF08443 RimK-like ATP-grasp domain VA249_28400 PF18030 RimK PreATP-grasp domain VA249_28410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_28410 PF03466 LysR substrate binding domain VA249_28450 PF00232 Glycosyl hydrolase family 1 VA249_28460 PF02743 Cache domain VA249_28460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_28460 PF00512 His Kinase A (phospho-acceptor) domain VA249_28470 PF02954 Bacterial regulatory protein, Fis family VA249_28470 PF00072 Response regulator receiver domain VA249_28470 PF00158 Sigma-54 interaction domain VA249_28480 PF00990 Diguanylate cyclase, GGDEF domain VA249_28500 PF05525 Branched-chain amino acid transport protein VA249_28530 PF01266 FAD dependent oxidoreductase VA249_28550 PF03116 NQR2, RnfD, RnfE family VA249_28560 PF03116 NQR2, RnfD, RnfE family VA249_28570 PF01212 Beta-eliminating lyase VA249_28590 PF07662 Na+ dependent nucleoside transporter C-terminus VA249_28590 PF07670 Nucleoside recognition VA249_28590 PF01773 Na+ dependent nucleoside transporter N-terminus VA249_28610 PF00563 EAL domain VA249_28610 PF00990 Diguanylate cyclase, GGDEF domain VA249_28610 PF03707 Bacterial signalling protein N terminal repeat VA249_28650 PF00990 Diguanylate cyclase, GGDEF domain VA249_28660 PF00875 DNA photolyase VA249_28660 PF03441 FAD binding domain of DNA photolyase VA249_28670 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VA249_28690 PF01625 Peptide methionine sulfoxide reductase VA249_28690 PF01641 SelR domain VA249_28700 PF02566 OsmC-like protein VA249_28710 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VA249_28710 PF14602 Hexapeptide repeat of succinyl-transferase VA249_28710 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_28730 PF13419 Haloacid dehalogenase-like hydrolase VA249_28780 PF12794 Mechanosensitive ion channel inner membrane domain 1 VA249_28780 PF12795 Mechanosensitive ion channel porin domain VA249_28780 PF00924 Mechanosensitive ion channel VA249_28790 PF00246 Zinc carboxypeptidase VA249_28790 PF18027 Cytosolic carboxypeptidase N-terminal domain VA249_28800 PF00691 OmpA family VA249_28800 PF01389 OmpA-like transmembrane domain VA249_28820 PF01566 Natural resistance-associated macrophage protein VA249_28830 PF00854 POT family VA249_28840 PF03313 Serine dehydratase alpha chain VA249_28840 PF03315 Serine dehydratase beta chain VA249_28890 PF01464 Transglycosylase SLT domain VA249_28890 PF01476 LysM domain VA249_28930 PF00460 Flagella basal body rod protein VA249_28940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_28940 PF00460 Flagella basal body rod protein VA249_28950 PF03963 Flagellar hook capping protein - N-terminal region VA249_28950 PF13861 FlgD Tudor-like domain VA249_28950 PF13860 FlgD Ig-like domain VA249_28960 PF07559 Flagellar basal body protein FlaE VA249_28960 PF00460 Flagella basal body rod protein VA249_28960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_28970 PF00460 Flagella basal body rod protein VA249_28970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_28990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_28990 PF00460 Flagella basal body rod protein VA249_29000 PF02107 Flagellar L-ring protein VA249_29010 PF02119 Flagellar P-ring protein VA249_29020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VA249_29020 PF10135 Rod binding protein VA249_29030 PF00460 Flagella basal body rod protein VA249_29030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA249_29090 PF01070 FMN-dependent dehydrogenase VA249_29100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_29100 PF03466 LysR substrate binding domain VA249_29150 PF13677 Membrane MotB of proton-channel complex MotA/MotB VA249_29150 PF00691 OmpA family VA249_29160 PF01618 MotA/TolQ/ExbB proton channel family VA249_29170 PF04545 Sigma-70, region 4 VA249_29170 PF04542 Sigma-70 region 2 VA249_29180 PF03748 Flagellar basal body-associated protein FliL VA249_29210 PF02561 Flagellar protein FliS VA249_29220 PF07196 Flagellin hook IN motif VA249_29220 PF07195 Flagellar hook-associated protein 2 C-terminus VA249_29220 PF02465 Flagellar hook-associated protein 2 N-terminus VA249_29250 PF00669 Bacterial flagellin N-terminal helical region VA249_29250 PF00700 Bacterial flagellin C-terminal helical region VA249_29270 PF00771 FHIPEP family VA249_29280 PF00771 FHIPEP family VA249_29290 PF01312 FlhB HrpN YscU SpaS Family VA249_29300 PF01311 Bacterial export proteins, family 1 VA249_29310 PF01313 Bacterial export proteins, family 3 VA249_29320 PF00813 FliP family VA249_29330 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA249_29360 PF00158 Sigma-54 interaction domain VA249_29360 PF00072 Response regulator receiver domain VA249_29360 PF02954 Bacterial regulatory protein, Fis family VA249_29370 PF02049 Flagellar hook-basal body complex protein FliE VA249_29390 PF01514 Secretory protein of YscJ/FliF family VA249_29390 PF08345 Flagellar M-ring protein C-terminal VA249_29400 PF14841 FliG middle domain VA249_29400 PF01706 FliG C-terminal domain VA249_29400 PF14842 FliG N-terminal domain VA249_29420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA249_29420 PF18269 T3SS EscN ATPase C-terminal domain VA249_29470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_29480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_29480 PF03466 LysR substrate binding domain VA249_29520 PF00072 Response regulator receiver domain VA249_29520 PF00486 Transcriptional regulatory protein, C terminal VA249_29530 PF13426 PAS domain VA249_29530 PF00072 Response regulator receiver domain VA249_29530 PF08448 PAS fold VA249_29530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_29530 PF00512 His Kinase A (phospho-acceptor) domain VA249_29540 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_29550 PF00266 Aminotransferase class-V VA249_29570 PF00563 EAL domain VA249_29570 PF00990 Diguanylate cyclase, GGDEF domain VA249_29570 PF03707 Bacterial signalling protein N terminal repeat VA249_29580 PF00155 Aminotransferase class I and II VA249_29590 PF00107 Zinc-binding dehydrogenase VA249_29590 PF08240 Alcohol dehydrogenase GroES-like domain VA249_29600 PF12167 Arm DNA-binding domain VA249_29600 PF00589 Phage integrase family VA249_29620 PF00436 Single-strand binding protein family VA249_29710 PF00717 Peptidase S24-like VA249_29710 PF01381 Helix-turn-helix VA249_29830 PF06147 Protein of unknown function (DUF968) VA249_29910 PF07471 Phage DNA packaging protein Nu1 VA249_29920 PF02413 Caudovirales tail fibre assembly protein, lambda gpK VA249_30110 PF08240 Alcohol dehydrogenase GroES-like domain VA249_30110 PF00107 Zinc-binding dehydrogenase VA249_30120 PF00664 ABC transporter transmembrane region VA249_30120 PF03412 Peptidase C39 family VA249_30120 PF00005 ABC transporter VA249_30140 PF00665 Integrase core domain VA249_30140 PF13276 HTH-like domain VA249_30140 PF13333 Integrase core domain VA249_30170 PF00924 Mechanosensitive ion channel VA249_30180 PF00924 Mechanosensitive ion channel VA249_30200 PF01070 FMN-dependent dehydrogenase VA249_30210 PF03466 LysR substrate binding domain VA249_30210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_30220 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA249_30220 PF00326 Prolyl oligopeptidase family VA249_30230 PF13654 AAA domain VA249_30230 PF05362 Lon protease (S16) C-terminal proteolytic domain VA249_30240 PF12729 Four helix bundle sensory module for signal transduction VA249_30240 PF00672 HAMP domain VA249_30240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_30250 PF12945 Flagellar protein YcgR VA249_30250 PF07238 PilZ domain VA249_30260 PF00583 Acetyltransferase (GNAT) family VA249_30270 PF12800 4Fe-4S binding domain VA249_30270 PF12838 4Fe-4S dicluster domain VA249_30280 PF12837 4Fe-4S binding domain VA249_30280 PF12801 4Fe-4S binding domain VA249_30290 PF01022 Bacterial regulatory protein, arsR family VA249_30320 PF00005 ABC transporter VA249_30320 PF12558 ATP-binding cassette cobalt transporter VA249_30330 PF07155 ECF-type riboflavin transporter, S component VA249_30340 PF00529 HlyD membrane-fusion protein of T1SS VA249_30340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_30350 PF11742 Protein of unknown function (DUF3302) VA249_30370 PF00990 Diguanylate cyclase, GGDEF domain VA249_30400 PF01048 Phosphorylase superfamily VA249_30410 PF08349 Protein of unknown function (DUF1722) VA249_30420 PF13411 MerR HTH family regulatory protein VA249_30430 PF03441 FAD binding domain of DNA photolyase VA249_30430 PF00875 DNA photolyase VA249_30440 PF17969 L,D-transpeptidase C-terminal domain VA249_30440 PF01476 LysM domain VA249_30440 PF03734 L,D-transpeptidase catalytic domain VA249_30460 PF00270 DEAD/DEAH box helicase VA249_30460 PF00271 Helicase conserved C-terminal domain VA249_30470 PF12849 PBP superfamily domain VA249_30480 PF00528 Binding-protein-dependent transport system inner membrane component VA249_30490 PF00528 Binding-protein-dependent transport system inner membrane component VA249_30500 PF00005 ABC transporter VA249_30510 PF17151 Periplasmic sensor domain VA249_30510 PF00990 Diguanylate cyclase, GGDEF domain VA249_30530 PF13519 von Willebrand factor type A domain VA249_30560 PF01882 Protein of unknown function DUF58 VA249_30570 PF07726 ATPase family associated with various cellular activities (AAA) VA249_30570 PF17863 AAA lid domain VA249_30580 PF02743 Cache domain VA249_30580 PF00672 HAMP domain VA249_30580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_30600 PF00196 Bacterial regulatory proteins, luxR family VA249_30610 PF14602 Hexapeptide repeat of succinyl-transferase VA249_30610 PF12464 Maltose acetyltransferase VA249_30630 PF01590 GAF domain VA249_30630 PF00360 Phytochrome region VA249_30630 PF00990 Diguanylate cyclase, GGDEF domain VA249_30630 PF00563 EAL domain VA249_30660 PF01389 OmpA-like transmembrane domain VA249_30660 PF00691 OmpA family VA249_30680 PF02378 Phosphotransferase system, EIIC VA249_30690 PF02378 Phosphotransferase system, EIIC VA249_30710 PF00127 Copper binding proteins, plastocyanin/azurin family VA249_30730 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_30740 PF00375 Sodium:dicarboxylate symporter family VA249_30750 PF13419 Haloacid dehalogenase-like hydrolase VA249_30760 PF10282 Lactonase, 7-bladed beta-propeller VA249_30770 PF01161 Phosphatidylethanolamine-binding protein VA249_30790 PF01758 Sodium Bile acid symporter family VA249_30840 PF03222 Tryptophan/tyrosine permease family VA249_30850 PF02743 Cache domain VA249_30850 PF00672 HAMP domain VA249_30850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_30860 PF07670 Nucleoside recognition VA249_30890 PF01551 Peptidase family M23 VA249_30890 PF08525 Opacity-associated protein A N-terminal motif VA249_30890 PF01476 LysM domain VA249_30920 PF00462 Glutaredoxin VA249_30930 PF00892 EamA-like transporter family VA249_30960 PF01557 Fumarylacetoacetate (FAA) hydrolase family VA249_30990 PF01661 Macro domain VA249_31000 PF01810 LysE type translocator VA249_31010 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA249_31010 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA249_31010 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA249_31010 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA249_31020 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VA249_31020 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VA249_31030 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA249_31040 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VA249_31050 PF00510 Cytochrome c oxidase subunit III VA249_31090 PF02628 Cytochrome oxidase assembly protein VA249_31100 PF01040 UbiA prenyltransferase family VA249_31110 PF01389 OmpA-like transmembrane domain VA249_31110 PF00691 OmpA family VA249_31120 PF00793 DAHP synthetase I family VA249_31130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_31130 PF08447 PAS fold VA249_31140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_31140 PF08447 PAS fold VA249_31140 PF13426 PAS domain VA249_31180 PF02779 Transketolase, pyrimidine binding domain VA249_31180 PF02780 Transketolase, C-terminal domain VA249_31180 PF00456 Transketolase, thiamine diphosphate binding domain VA249_31190 PF00923 Transaldolase/Fructose-6-phosphate aldolase VA249_31210 PF08329 Chitinase A, N-terminal domain VA249_31210 PF00704 Glycosyl hydrolases family 18 VA249_31220 PF00581 Rhodanese-like domain VA249_31250 PF12561 ToxR activated gene A lipoprotein domain VA249_31250 PF00041 Fibronectin type III domain VA249_31260 PF00899 ThiF family VA249_31270 PF00994 Probable molybdopterin binding domain VA249_31270 PF03454 MoeA C-terminal region (domain IV) VA249_31270 PF03453 MoeA N-terminal region (domain I and II) VA249_31280 PF01227 GTP cyclohydrolase I VA249_31290 PF01566 Natural resistance-associated macrophage protein VA249_31310 PF00654 Voltage gated chloride channel VA249_31340 PF00248 Aldo/keto reductase family VA249_31350 PF00072 Response regulator receiver domain VA249_31370 PF03853 YjeF-related protein N-terminus VA249_31370 PF01256 Carbohydrate kinase VA249_31380 PF00478 IMP dehydrogenase / GMP reductase domain VA249_31390 PF00583 Acetyltransferase (GNAT) family VA249_31400 PF03358 NADPH-dependent FMN reductase VA249_31410 PF00141 Peroxidase VA249_31420 PF13533 Biotin-lipoyl like VA249_31440 PF01979 Amidohydrolase family VA249_31450 PF00282 Pyridoxal-dependent decarboxylase conserved domain VA249_31480 PF13977 BetI-type transcriptional repressor, C-terminal VA249_31480 PF00440 Bacterial regulatory proteins, tetR family VA249_31490 PF00171 Aldehyde dehydrogenase family VA249_31500 PF05199 GMC oxidoreductase VA249_31500 PF00732 GMC oxidoreductase VA249_31510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VA249_31520 PF00528 Binding-protein-dependent transport system inner membrane component VA249_31530 PF00005 ABC transporter VA249_31530 PF00571 CBS domain VA249_31540 PF00881 Nitroreductase family VA249_31550 PF01145 SPFH domain / Band 7 family VA249_31590 PF13188 PAS domain VA249_31590 PF03707 Bacterial signalling protein N terminal repeat VA249_31590 PF00990 Diguanylate cyclase, GGDEF domain VA249_31590 PF00563 EAL domain VA249_31600 PF09308 LuxQ, periplasmic VA249_31600 PF00512 His Kinase A (phospho-acceptor) domain VA249_31600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_31600 PF00072 Response regulator receiver domain VA249_31640 PF04116 Fatty acid hydroxylase superfamily VA249_31680 PF03808 Glycosyl transferase WecB/TagA/CpsF family VA249_31700 PF00534 Glycosyl transferases group 1 VA249_31700 PF13439 Glycosyltransferase Family 4 VA249_31770 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_31780 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VA249_31780 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VA249_31780 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VA249_31790 PF02350 UDP-N-acetylglucosamine 2-epimerase VA249_31800 PF13614 AAA domain VA249_31800 PF02706 Chain length determinant protein VA249_31800 PF13807 G-rich domain on putative tyrosine kinase VA249_31830 PF02397 Bacterial sugar transferase VA249_31880 PF01048 Phosphorylase superfamily VA249_31890 PF00990 Diguanylate cyclase, GGDEF domain VA249_31890 PF00563 EAL domain VA249_31900 PF05025 RbsD / FucU transport protein family VA249_31910 PF07690 Major Facilitator Superfamily VA249_31930 PF00294 pfkB family carbohydrate kinase VA249_31940 PF00294 pfkB family carbohydrate kinase VA249_31950 PF00356 Bacterial regulatory proteins, lacI family VA249_31970 PF13411 MerR HTH family regulatory protein VA249_32020 PF12805 FUSC-like inner membrane protein yccS VA249_32030 PF13361 UvrD-like helicase C-terminal domain VA249_32030 PF00580 UvrD/REP helicase N-terminal domain VA249_32030 PF12462 DNA helicase IV / RNA helicase N terminal VA249_32040 PF02142 MGS-like domain VA249_32050 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA249_32060 PF00512 His Kinase A (phospho-acceptor) domain VA249_32060 PF01627 Hpt domain VA249_32060 PF00672 HAMP domain VA249_32060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_32060 PF00072 Response regulator receiver domain VA249_32090 PF00884 Sulfatase VA249_32100 PF00884 Sulfatase VA249_32120 PF07726 ATPase family associated with various cellular activities (AAA) VA249_32120 PF17863 AAA lid domain VA249_32150 PF00092 von Willebrand factor type A domain VA249_32180 PF01872 RibD C-terminal domain VA249_32180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_32190 PF03466 LysR substrate binding domain VA249_32190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_32200 PF04076 Bacterial OB fold (BOF) protein VA249_32230 PF03781 Sulfatase-modifying factor enzyme 1 VA249_32240 PF04055 Radical SAM superfamily VA249_32240 PF13186 Iron-sulfur cluster-binding domain VA249_32260 PF18081 Fanconi anemia-associated nuclease SAP domain VA249_32260 PF08774 VRR-NUC domain VA249_32290 PF03606 C4-dicarboxylate anaerobic carrier VA249_32320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_32320 PF00072 Response regulator receiver domain VA249_32330 PF01926 50S ribosome-binding GTPase VA249_32340 PF00881 Nitroreductase family VA249_32350 PF01584 CheW-like domain VA249_32350 PF00072 Response regulator receiver domain VA249_32360 PF07963 Prokaryotic N-terminal methylation motif VA249_32380 PF00892 EamA-like transporter family VA249_32410 PF01569 PAP2 superfamily VA249_32420 PF00893 Small Multidrug Resistance protein VA249_32430 PF00892 EamA-like transporter family VA249_32450 PF00171 Aldehyde dehydrogenase family VA249_32470 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA249_32500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA249_32510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_32530 PF00149 Calcineurin-like phosphoesterase VA249_32530 PF12320 Type 5 capsule protein repressor C-terminal domain VA249_32540 PF13476 AAA domain VA249_32560 PF00704 Glycosyl hydrolases family 18 VA249_32600 PF08212 Lipocalin-like domain VA249_32670 PF00665 Integrase core domain VA249_32700 PF12161 HsdM N-terminal domain VA249_32700 PF02384 N-6 DNA Methylase VA249_32720 PF08463 EcoEI R protein C-terminal VA249_32720 PF00271 Helicase conserved C-terminal domain VA249_32720 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VA249_32720 PF04851 Type III restriction enzyme, res subunit VA249_32740 PF00271 Helicase conserved C-terminal domain VA249_32740 PF00176 SNF2 family N-terminal domain VA249_32750 PF02347 Glycine cleavage system P-protein VA249_32760 PF01597 Glycine cleavage H-protein VA249_32770 PF00464 Serine hydroxymethyltransferase VA249_32790 PF01571 Aminomethyltransferase folate-binding domain VA249_32790 PF08669 Glycine cleavage T-protein C-terminal barrel domain VA249_32810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_32830 PF00873 AcrB/AcrD/AcrF family VA249_32850 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA249_32850 PF02378 Phosphotransferase system, EIIC VA249_32860 PF00294 pfkB family carbohydrate kinase VA249_32870 PF00381 PTS HPr component phosphorylation site VA249_32870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA249_32880 PF00356 Bacterial regulatory proteins, lacI family VA249_32880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA249_32940 PF00924 Mechanosensitive ion channel VA249_32970 PF01914 MarC family integral membrane protein VA249_32980 PF00571 CBS domain VA249_32980 PF01769 Divalent cation transporter VA249_32980 PF03448 MgtE intracellular N domain VA249_33000 PF01699 Sodium/calcium exchanger protein VA249_33020 PF00528 Binding-protein-dependent transport system inner membrane component VA249_33030 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_33040 PF00528 Binding-protein-dependent transport system inner membrane component VA249_33050 PF00005 ABC transporter VA249_33060 PF00465 Iron-containing alcohol dehydrogenase VA249_33070 PF12833 Helix-turn-helix domain VA249_33070 PF06719 AraC-type transcriptional regulator N-terminus VA249_33080 PF00483 Nucleotidyl transferase VA249_33090 PF01268 Formate--tetrahydrofolate ligase VA249_33100 PF00294 pfkB family carbohydrate kinase VA249_33130 PF11849 Domain of unknown function (DUF3369) VA249_33140 PF13419 Haloacid dehalogenase-like hydrolase VA249_33160 PF00271 Helicase conserved C-terminal domain VA249_33160 PF00270 DEAD/DEAH box helicase VA249_33190 PF01292 Prokaryotic cytochrome b561 VA249_33200 PF04264 YceI-like domain VA249_33210 PF01226 Formate/nitrite transporter VA249_33220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_33220 PF03466 LysR substrate binding domain VA249_33230 PF06496 Protein of unknown function (DUF1097) VA249_33240 PF11398 Protein of unknown function (DUF2813) VA249_33250 PF00149 Calcineurin-like phosphoesterase VA249_33250 PF02872 5'-nucleotidase, C-terminal domain VA249_33260 PF03741 Integral membrane protein TerC family VA249_33300 PF12262 Bacterial virulence factor lipase N-terminal VA249_33310 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA249_33340 PF03061 Thioesterase superfamily VA249_33360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_33360 PF12793 Sugar transport-related sRNA regulator N-term VA249_33420 PF00684 DnaJ central domain VA249_33420 PF00226 DnaJ domain VA249_33420 PF01556 DnaJ C terminal domain VA249_33440 PF00990 Diguanylate cyclase, GGDEF domain VA249_33440 PF03707 Bacterial signalling protein N terminal repeat VA249_33440 PF13188 PAS domain VA249_33440 PF00563 EAL domain VA249_33450 PF12241 Trans-2-enoyl-CoA reductase catalytic region VA249_33450 PF07055 Enoyl reductase FAD binding domain VA249_33450 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VA249_33460 PF13472 GDSL-like Lipase/Acylhydrolase family VA249_33470 PF00005 ABC transporter VA249_33500 PF02626 Carboxyltransferase domain, subdomain A and B VA249_33510 PF02682 Carboxyltransferase domain, subdomain C and D VA249_33520 PF03746 LamB/YcsF family VA249_33530 PF05231 MASE1 VA249_33530 PF00990 Diguanylate cyclase, GGDEF domain VA249_33530 PF00563 EAL domain VA249_33530 PF08447 PAS fold VA249_33530 PF08448 PAS fold VA249_33530 PF13426 PAS domain VA249_33540 PF16363 GDP-mannose 4,6 dehydratase VA249_33550 PF07715 TonB-dependent Receptor Plug Domain VA249_33550 PF04886 PT repeat VA249_33550 PF00593 TonB dependent receptor VA249_33560 PF03466 LysR substrate binding domain VA249_33560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_33570 PF00583 Acetyltransferase (GNAT) family VA249_33570 PF13380 CoA binding domain VA249_33570 PF13607 Succinyl-CoA ligase like flavodoxin domain VA249_33590 PF07478 D-ala D-ala ligase C-terminus VA249_33590 PF01820 D-ala D-ala ligase N-terminus VA249_33610 PF01253 Translation initiation factor SUI1 VA249_33640 PF03701 Uncharacterised protein family (UPF0181) VA249_33670 PF00486 Transcriptional regulatory protein, C terminal VA249_33670 PF00072 Response regulator receiver domain VA249_33690 PF02233 NAD(P) transhydrogenase beta subunit VA249_33700 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VA249_33700 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VA249_33700 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VA249_33730 PF00990 Diguanylate cyclase, GGDEF domain VA249_33750 PF00360 Phytochrome region VA249_33750 PF00563 EAL domain VA249_33750 PF00990 Diguanylate cyclase, GGDEF domain VA249_33750 PF01590 GAF domain VA249_33770 PF03459 TOBE domain VA249_33770 PF00005 ABC transporter VA249_33780 PF00528 Binding-protein-dependent transport system inner membrane component VA249_33810 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VA249_33810 PF07685 CobB/CobQ-like glutamine amidotransferase domain VA249_33840 PF04076 Bacterial OB fold (BOF) protein VA249_33860 PF08443 RimK-like ATP-grasp domain VA249_33860 PF18030 RimK PreATP-grasp domain VA249_33870 PF00155 Aminotransferase class I and II VA249_33880 PF12833 Helix-turn-helix domain VA249_33890 PF01554 MatE VA249_33910 PF03477 ATP cone domain VA249_33910 PF13597 Anaerobic ribonucleoside-triphosphate reductase VA249_33950 PF04143 Sulphur transport VA249_33980 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_33980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_33990 PF01381 Helix-turn-helix VA249_34000 PF07804 HipA-like C-terminal domain VA249_34000 PF13657 HipA N-terminal domain VA249_34050 PF02384 N-6 DNA Methylase VA249_34050 PF12161 HsdM N-terminal domain VA249_34060 PF01420 Type I restriction modification DNA specificity domain VA249_34070 PF13476 AAA domain VA249_34110 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VA249_34110 PF11867 Domain of unknown function (DUF3387) VA249_34110 PF18766 SWI2/SNF2 ATPase VA249_34120 PF11867 Domain of unknown function (DUF3387) VA249_34120 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VA249_34120 PF18766 SWI2/SNF2 ATPase VA249_34170 PF00350 Dynamin family VA249_34250 PF01695 IstB-like ATP binding protein VA249_34260 PF00665 Integrase core domain VA249_34280 PF13737 Transposase DDE domain VA249_34370 PF13408 Recombinase zinc beta ribbon domain VA249_34370 PF00239 Resolvase, N terminal domain VA249_34370 PF07508 Recombinase VA249_34380 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_34380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA249_34410 PF01979 Amidohydrolase family VA249_34430 PF01594 AI-2E family transporter VA249_34450 PF00529 HlyD membrane-fusion protein of T1SS VA249_34450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_34480 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VA249_34480 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VA249_34490 PF00085 Thioredoxin VA249_34500 PF07690 Major Facilitator Superfamily VA249_34510 PF11756 Nitrous oxide-stimulated promoter VA249_34520 PF13302 Acetyltransferase (GNAT) domain VA249_34560 PF10414 Sirohaem synthase dimerisation region VA249_34560 PF14824 Sirohaem biosynthesis protein central VA249_34560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_34570 PF01226 Formate/nitrite transporter VA249_34580 PF13806 Rieske-like [2Fe-2S] domain VA249_34590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA249_34590 PF18267 Rubredoxin NAD+ reductase C-terminal domain VA249_34590 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_34590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA249_34590 PF04324 BFD-like [2Fe-2S] binding domain VA249_34600 PF07694 5TMR of 5TMR-LYT VA249_34600 PF00990 Diguanylate cyclase, GGDEF domain VA249_34640 PF09330 D-lactate dehydrogenase, membrane binding VA249_34640 PF01565 FAD binding domain VA249_34650 PF05762 VWA domain containing CoxE-like protein VA249_34660 PF17868 AAA lid domain VA249_34660 PF12592 Protein of unknown function (DUF3763) VA249_34660 PF07728 AAA domain (dynein-related subfamily) VA249_34680 PF01212 Beta-eliminating lyase VA249_34690 PF00034 Cytochrome c VA249_34700 PF03606 C4-dicarboxylate anaerobic carrier VA249_34720 PF07690 Major Facilitator Superfamily VA249_34780 PF00005 ABC transporter VA249_34780 PF00664 ABC transporter transmembrane region VA249_34830 PF13193 AMP-binding enzyme C-terminal domain VA249_34830 PF00501 AMP-binding enzyme VA249_34850 PF01594 AI-2E family transporter VA249_34930 PF04324 BFD-like [2Fe-2S] binding domain VA249_34930 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA249_34930 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA249_34930 PF13806 Rieske-like [2Fe-2S] domain VA249_34930 PF18267 Rubredoxin NAD+ reductase C-terminal domain VA249_34930 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_34940 PF00005 ABC transporter VA249_34950 PF00528 Binding-protein-dependent transport system inner membrane component VA249_34960 PF00005 ABC transporter VA249_34980 PF08376 Nitrate and nitrite sensing VA249_34980 PF03861 ANTAR domain VA249_34990 PF01738 Dienelactone hydrolase family VA249_35000 PF02885 Glycosyl transferase family, helical bundle domain VA249_35000 PF00591 Glycosyl transferase family, a/b domain VA249_35010 PF10414 Sirohaem synthase dimerisation region VA249_35010 PF14824 Sirohaem biosynthesis protein central VA249_35010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA249_35020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_35020 PF00384 Molybdopterin oxidoreductase VA249_35020 PF01568 Molydopterin dinucleotide binding domain VA249_35040 PF03222 Tryptophan/tyrosine permease family VA249_35060 PF01483 Proprotein convertase P-domain VA249_35060 PF00082 Subtilase family VA249_35080 PF00245 Alkaline phosphatase VA249_35090 PF18719 ArlS sensor domain VA249_35090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_35090 PF00512 His Kinase A (phospho-acceptor) domain VA249_35100 PF00072 Response regulator receiver domain VA249_35100 PF00486 Transcriptional regulatory protein, C terminal VA249_35150 PF00012 Hsp70 protein VA249_35180 PF00676 Dehydrogenase E1 component VA249_35190 PF02779 Transketolase, pyrimidine binding domain VA249_35190 PF02780 Transketolase, C-terminal domain VA249_35200 PF00364 Biotin-requiring enzyme VA249_35200 PF02817 e3 binding domain VA249_35200 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA249_35210 PF01012 Electron transfer flavoprotein domain VA249_35210 PF00766 Electron transfer flavoprotein FAD-binding domain VA249_35220 PF01012 Electron transfer flavoprotein domain VA249_35240 PF00043 Glutathione S-transferase, C-terminal domain VA249_35240 PF13417 Glutathione S-transferase, N-terminal domain VA249_35250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_35250 PF03466 LysR substrate binding domain VA249_35260 PF00528 Binding-protein-dependent transport system inner membrane component VA249_35270 PF00528 Binding-protein-dependent transport system inner membrane component VA249_35280 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA249_35290 PF00005 ABC transporter VA249_35320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA249_35320 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_35340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_35340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_35350 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_35350 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_35360 PF00378 Enoyl-CoA hydratase/isomerase VA249_35370 PF00378 Enoyl-CoA hydratase/isomerase VA249_35380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_35380 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_35380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_35390 PF00171 Aldehyde dehydrogenase family VA249_35400 PF00108 Thiolase, N-terminal domain VA249_35400 PF02803 Thiolase, C-terminal domain VA249_35410 PF00108 Thiolase, N-terminal domain VA249_35410 PF02803 Thiolase, C-terminal domain VA249_35420 PF09278 MerR, DNA binding VA249_35420 PF00376 MerR family regulatory protein VA249_35430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA249_35430 PF02770 Acyl-CoA dehydrogenase, middle domain VA249_35430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA249_35440 PF01039 Carboxyl transferase domain VA249_35450 PF00378 Enoyl-CoA hydratase/isomerase VA249_35460 PF00682 HMGL-like VA249_35480 PF00034 Cytochrome c VA249_35490 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA249_35510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA249_35510 PF00034 Cytochrome c VA249_35520 PF00871 Acetokinase family VA249_35530 PF03880 DbpA RNA binding domain VA249_35530 PF00270 DEAD/DEAH box helicase VA249_35530 PF00271 Helicase conserved C-terminal domain VA249_35540 PF13358 DDE superfamily endonuclease VA249_35560 PF00575 S1 RNA binding domain VA249_35560 PF08206 Ribonuclease B OB domain VA249_35560 PF00773 RNB domain VA249_35570 PF12833 Helix-turn-helix domain VA249_35580 PF12849 PBP superfamily domain VA249_35590 PF01575 MaoC like domain VA249_35630 PF14525 AraC-binding-like domain VA249_35630 PF12833 Helix-turn-helix domain VA249_35640 PF00005 ABC transporter VA249_35760 PF02796 Helix-turn-helix domain of resolvase VA249_35760 PF00239 Resolvase, N terminal domain VA249_35770 PF01381 Helix-turn-helix VA249_35770 PF07883 Cupin domain VA249_35790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_35790 PF00529 HlyD membrane-fusion protein of T1SS VA249_35850 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_35870 PF00990 Diguanylate cyclase, GGDEF domain VA249_35870 PF08448 PAS fold VA249_35880 PF00860 Permease family VA249_35890 PF00005 ABC transporter VA249_35930 PF00271 Helicase conserved C-terminal domain VA249_35930 PF00270 DEAD/DEAH box helicase VA249_35940 PF02492 CobW/HypB/UreG, nucleotide-binding domain VA249_35940 PF07683 Cobalamin synthesis protein cobW C-terminal domain VA249_35960 PF01470 Pyroglutamyl peptidase VA249_36000 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) VA249_36020 PF13340 Putative transposase of IS4/5 family (DUF4096) VA249_36040 PF12843 Putative quorum-sensing-regulated virulence factor VA249_36080 PF01329 Pterin 4 alpha carbinolamine dehydratase VA249_36090 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VA249_36100 PF00501 AMP-binding enzyme VA249_36100 PF13193 AMP-binding enzyme C-terminal domain VA249_36120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_36140 PF00892 EamA-like transporter family VA249_36170 PF00465 Iron-containing alcohol dehydrogenase VA249_36180 PF07995 Glucose / Sorbosone dehydrogenase VA249_36200 PF00210 Ferritin-like domain VA249_36210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_36210 PF00672 HAMP domain VA249_36210 PF17200 Single Cache domain 2 VA249_36230 PF00005 ABC transporter VA249_36230 PF02687 FtsX-like permease family VA249_36230 PF12704 MacB-like periplasmic core domain VA249_36240 PF00005 ABC transporter VA249_36240 PF02687 FtsX-like permease family VA249_36240 PF12704 MacB-like periplasmic core domain VA249_36280 PF00313 'Cold-shock' DNA-binding domain VA249_36340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA249_36340 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA249_36390 PF00072 Response regulator receiver domain VA249_36390 PF00196 Bacterial regulatory proteins, luxR family VA249_36400 PF13419 Haloacid dehalogenase-like hydrolase VA249_36410 PF00472 RF-1 domain VA249_36420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_36420 PF12729 Four helix bundle sensory module for signal transduction VA249_36420 PF00672 HAMP domain VA249_36430 PF00873 AcrB/AcrD/AcrF family VA249_36440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_36450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA249_36460 PF07687 Peptidase dimerisation domain VA249_36460 PF01546 Peptidase family M20/M25/M40 VA249_36490 PF00072 Response regulator receiver domain VA249_36490 PF00196 Bacterial regulatory proteins, luxR family VA249_36500 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VA249_36500 PF00672 HAMP domain VA249_36500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_36500 PF07730 Histidine kinase VA249_36520 PF01568 Molydopterin dinucleotide binding domain VA249_36520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_36520 PF00384 Molybdopterin oxidoreductase VA249_36530 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VA249_36540 PF03264 NapC/NirT cytochrome c family, N-terminal region VA249_36560 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VA249_36560 PF00561 alpha/beta hydrolase fold VA249_36580 PF02803 Thiolase, C-terminal domain VA249_36580 PF00108 Thiolase, N-terminal domain VA249_36590 PF00106 short chain dehydrogenase VA249_36600 PF02355 Protein export membrane protein VA249_36600 PF07549 SecD/SecF GG Motif VA249_36610 PF13721 SecD export protein N-terminal TM region VA249_36610 PF07549 SecD/SecF GG Motif VA249_36610 PF02355 Protein export membrane protein VA249_36650 PF13404 AsnC-type helix-turn-helix domain VA249_36650 PF01037 Lrp/AsnC ligand binding domain VA249_36670 PF00072 Response regulator receiver domain VA249_36670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_36670 PF09308 LuxQ, periplasmic VA249_36670 PF00512 His Kinase A (phospho-acceptor) domain VA249_36680 PF13407 Periplasmic binding protein domain VA249_36690 PF01541 GIY-YIG catalytic domain VA249_36700 PF04337 Protein of unknown function, DUF480 VA249_36720 PF04363 Protein of unknown function (DUF496) VA249_36730 PF01554 MatE VA249_36750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VA249_36760 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA249_36760 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA249_36790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_36790 PF03466 LysR substrate binding domain VA249_36810 PF00873 AcrB/AcrD/AcrF family VA249_36840 PF00155 Aminotransferase class I and II VA249_36840 PF00392 Bacterial regulatory proteins, gntR family VA249_36880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_36880 PF00529 HlyD membrane-fusion protein of T1SS VA249_36890 PF03109 ABC1 family VA249_36900 PF00571 CBS domain VA249_36900 PF03448 MgtE intracellular N domain VA249_36900 PF01769 Divalent cation transporter VA249_36910 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VA249_36920 PF07969 Amidohydrolase family VA249_36950 PF01966 HD domain VA249_36970 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VA249_36980 PF00255 Glutathione peroxidase VA249_37000 PF01323 DSBA-like thioredoxin domain VA249_37030 PF00106 short chain dehydrogenase VA249_37050 PF00072 Response regulator receiver domain VA249_37050 PF00486 Transcriptional regulatory protein, C terminal VA249_37060 PF00672 HAMP domain VA249_37060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_37060 PF00512 His Kinase A (phospho-acceptor) domain VA249_37080 PF00884 Sulfatase VA249_37080 PF08019 Phosphoethanolamine transferase EptA/EptB VA249_37100 PF07690 Major Facilitator Superfamily VA249_37140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_37140 PF03466 LysR substrate binding domain VA249_37150 PF02525 Flavodoxin-like fold VA249_37160 PF00999 Sodium/hydrogen exchanger family VA249_37160 PF02254 TrkA-N domain VA249_37180 PF03466 LysR substrate binding domain VA249_37180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_37230 PF00128 Alpha amylase, catalytic domain VA249_37330 PF02796 Helix-turn-helix domain of resolvase VA249_37330 PF00239 Resolvase, N terminal domain VA249_37410 PF00072 Response regulator receiver domain VA249_37410 PF01584 CheW-like domain VA249_37430 PF01243 Pyridoxamine 5'-phosphate oxidase VA249_37440 PF06228 Haem utilisation ChuX/HutX VA249_37450 PF04055 Radical SAM superfamily VA249_37460 PF03544 Gram-negative bacterial TonB protein C-terminal VA249_37470 PF01618 MotA/TolQ/ExbB proton channel family VA249_37480 PF02472 Biopolymer transport protein ExbD/TolR VA249_37500 PF01032 FecCD transport family VA249_37510 PF00005 ABC transporter VA249_37590 PF07729 FCD domain VA249_37590 PF00392 Bacterial regulatory proteins, gntR family VA249_37610 PF01467 Cytidylyltransferase-like VA249_37620 PF02540 NAD synthase VA249_37630 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_37630 PF03476 MOSC N-terminal beta barrel domain VA249_37630 PF00111 2Fe-2S iron-sulfur cluster binding domain VA249_37630 PF03473 MOSC domain VA249_37630 PF03473 MOSC domain VA249_37630 PF03476 MOSC N-terminal beta barrel domain VA249_37640 PF01679 Proteolipid membrane potential modulator VA249_37650 PF01979 Amidohydrolase family VA249_37660 PF05661 Protein of unknown function (DUF808) VA249_37680 PF04399 Glutaredoxin 2, C terminal domain VA249_37680 PF13417 Glutathione S-transferase, N-terminal domain VA249_37690 PF08240 Alcohol dehydrogenase GroES-like domain VA249_37690 PF00107 Zinc-binding dehydrogenase VA249_37810 PF00528 Binding-protein-dependent transport system inner membrane component VA249_37820 PF00528 Binding-protein-dependent transport system inner membrane component VA249_37820 PF14785 Maltose transport system permease protein MalF P2 domain VA249_37830 PF01547 Bacterial extracellular solute-binding protein VA249_37840 PF00005 ABC transporter VA249_37840 PF08402 TOBE domain VA249_37850 PF04266 ASCH domain VA249_37860 PF16925 Tetracyclin repressor-like, C-terminal domain VA249_37860 PF00440 Bacterial regulatory proteins, tetR family VA249_37870 PF16884 N-terminal domain of oxidoreductase VA249_37870 PF00107 Zinc-binding dehydrogenase VA249_37890 PF00199 Catalase VA249_37890 PF06628 Catalase-related immune-responsive VA249_37900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA249_37900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA249_37920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_37920 PF03466 LysR substrate binding domain VA249_37940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA249_37960 PF12833 Helix-turn-helix domain VA249_37970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA249_37970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA249_37980 PF01238 Phosphomannose isomerase type I VA249_38000 PF11975 Family 4 glycosyl hydrolase C-terminal domain VA249_38000 PF02056 Family 4 glycosyl hydrolase VA249_38010 PF12833 Helix-turn-helix domain VA249_38030 PF01048 Phosphorylase superfamily VA249_38040 PF01048 Phosphorylase superfamily VA249_38060 PF07662 Na+ dependent nucleoside transporter C-terminus VA249_38060 PF07670 Nucleoside recognition VA249_38060 PF01773 Na+ dependent nucleoside transporter N-terminus VA249_38070 PF02525 Flavodoxin-like fold VA249_38080 PF00860 Permease family VA249_38090 PF01979 Amidohydrolase family VA249_38110 PF01979 Amidohydrolase family VA249_38120 PF01568 Molydopterin dinucleotide binding domain VA249_38120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VA249_38120 PF00384 Molybdopterin oxidoreductase VA249_38120 PF12838 4Fe-4S dicluster domain VA249_38120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_38140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_38150 PF00873 AcrB/AcrD/AcrF family VA249_38200 PF00698 Acyl transferase domain VA249_38200 PF08240 Alcohol dehydrogenase GroES-like domain VA249_38200 PF16197 Ketoacyl-synthetase C-terminal extension VA249_38200 PF00109 Beta-ketoacyl synthase, N-terminal domain VA249_38200 PF02801 Beta-ketoacyl synthase, C-terminal domain VA249_38200 PF08659 KR domain VA249_38200 PF00550 Phosphopantetheine attachment site VA249_38200 PF14765 Polyketide synthase dehydratase VA249_38230 PF00293 NUDIX domain VA249_38240 PF00583 Acetyltransferase (GNAT) family VA249_38250 PF00326 Prolyl oligopeptidase family VA249_38250 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA249_38270 PF00582 Universal stress protein family VA249_38290 PF02357 Transcription termination factor nusG VA249_38320 PF01734 Patatin-like phospholipase VA249_38330 PF05726 Pirin C-terminal cupin domain VA249_38330 PF02678 Pirin VA249_38340 PF00313 'Cold-shock' DNA-binding domain VA249_38370 PF00462 Glutaredoxin VA249_38370 PF08534 Redoxin VA249_38390 PF07943 Penicillin-binding protein 5, C-terminal domain VA249_38390 PF00768 D-alanyl-D-alanine carboxypeptidase VA249_38410 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_38420 PF02525 Flavodoxin-like fold VA249_38430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_38430 PF03466 LysR substrate binding domain VA249_38440 PF02798 Glutathione S-transferase, N-terminal domain VA249_38450 PF00440 Bacterial regulatory proteins, tetR family VA249_38450 PF02909 Tetracyclin repressor-like, C-terminal domain VA249_38460 PF01872 RibD C-terminal domain VA249_38510 PF00106 short chain dehydrogenase VA249_38530 PF03466 LysR substrate binding domain VA249_38530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_38540 PF01497 Periplasmic binding protein VA249_38540 PF12833 Helix-turn-helix domain VA249_38550 PF00155 Aminotransferase class I and II VA249_38600 PF00270 DEAD/DEAH box helicase VA249_38600 PF00271 Helicase conserved C-terminal domain VA249_38610 PF12833 Helix-turn-helix domain VA249_38610 PF01965 DJ-1/PfpI family VA249_38640 PF00582 Universal stress protein family VA249_38650 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VA249_38680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_38680 PF03466 LysR substrate binding domain VA249_38690 PF00709 Adenylosuccinate synthetase VA249_38700 PF00011 Hsp20/alpha crystallin family VA249_38710 PF00012 Hsp70 protein VA249_38720 PF00684 DnaJ central domain VA249_38720 PF00226 DnaJ domain VA249_38720 PF01556 DnaJ C terminal domain VA249_38730 PF03618 Kinase/pyrophosphorylase VA249_38740 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VA249_38740 PF00391 PEP-utilising enzyme, mobile domain VA249_38740 PF02896 PEP-utilising enzyme, TIM barrel domain VA249_38760 PF04976 DMSO reductase anchor subunit (DmsC) VA249_38770 PF13247 4Fe-4S dicluster domain VA249_38770 PF12800 4Fe-4S binding domain VA249_38780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA249_38780 PF00384 Molybdopterin oxidoreductase VA249_38780 PF01568 Molydopterin dinucleotide binding domain VA249_38790 PF02613 Nitrate reductase delta subunit VA249_38810 PF00196 Bacterial regulatory proteins, luxR family VA249_38820 PF00579 tRNA synthetases class I (W and Y) VA249_38840 PF03466 LysR substrate binding domain VA249_38840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_38850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_38860 PF00873 AcrB/AcrD/AcrF family VA249_38870 PF02321 Outer membrane efflux protein VA249_38880 PF03616 Sodium/glutamate symporter VA249_38900 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA249_38900 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VA249_38900 PF00703 Glycosyl hydrolases family 2 VA249_38900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA249_38910 PF02028 BCCT, betaine/carnitine/choline family transporter VA249_38950 PF00873 AcrB/AcrD/AcrF family VA249_38980 PF00873 AcrB/AcrD/AcrF family VA249_38990 PF13533 Biotin-lipoyl like VA249_39000 PF13091 PLD-like domain VA249_39010 PF13091 PLD-like domain VA249_39070 PF00486 Transcriptional regulatory protein, C terminal VA249_39090 PF00486 Transcriptional regulatory protein, C terminal VA249_39090 PF18500 CadC C-terminal domain 1 VA249_39110 PF09278 MerR, DNA binding VA249_39110 PF00376 MerR family regulatory protein VA249_39120 PF14492 Elongation Factor G, domain II VA249_39120 PF00679 Elongation factor G C-terminus VA249_39120 PF00009 Elongation factor Tu GTP binding domain VA249_39120 PF03144 Elongation factor Tu domain 2 VA249_39120 PF03764 Elongation factor G, domain IV VA249_39160 PF02001 Protein of unknown function DUF134 VA249_39180 PF00528 Binding-protein-dependent transport system inner membrane component VA249_39190 PF00005 ABC transporter VA249_39190 PF00571 CBS domain VA249_39200 PF04170 NlpE N-terminal domain VA249_39200 PF17185 NlpE C-terminal OB domain VA249_39210 PF03466 LysR substrate binding domain VA249_39210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_39250 PF06942 GlpM protein VA249_39270 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VA249_39270 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VA249_39290 PF00857 Isochorismatase family VA249_39300 PF00080 Copper/zinc superoxide dismutase (SODC) VA249_39330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA249_39340 PF01625 Peptide methionine sulfoxide reductase VA249_39340 PF01641 SelR domain VA249_39380 PF00581 Rhodanese-like domain VA249_39390 PF00144 Beta-lactamase VA249_39400 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VA249_39400 PF12833 Helix-turn-helix domain VA249_39430 PF09905 DNA-binding protein VF530 VA249_39440 PF00005 ABC transporter VA249_39440 PF12848 ABC transporter VA249_39490 PF13533 Biotin-lipoyl like VA249_39510 PF01594 AI-2E family transporter VA249_39520 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VA249_39540 PF00175 Oxidoreductase NAD-binding domain VA249_39540 PF00970 Oxidoreductase FAD-binding domain VA249_39560 PF09905 DNA-binding protein VF530 VA249_39570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_39570 PF03466 LysR substrate binding domain VA249_39590 PF03466 LysR substrate binding domain VA249_39590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_39610 PF12706 Beta-lactamase superfamily domain VA249_39640 PF00768 D-alanyl-D-alanine carboxypeptidase VA249_39640 PF07943 Penicillin-binding protein 5, C-terminal domain VA249_39650 PF00561 alpha/beta hydrolase fold VA249_39670 PF02469 Fasciclin domain VA249_39690 PF18416 N-acetylglucosamine binding protein domain 2 VA249_39690 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VA249_39720 PF17200 Single Cache domain 2 VA249_39720 PF00672 HAMP domain VA249_39720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_39730 PF01734 Patatin-like phospholipase VA249_39790 PF01914 MarC family integral membrane protein VA249_39800 PF05958 tRNA (Uracil-5-)-methyltransferase VA249_39810 PF00881 Nitroreductase family VA249_39870 PF00375 Sodium:dicarboxylate symporter family VA249_39880 PF06803 Protein of unknown function (DUF1232) VA249_39890 PF07687 Peptidase dimerisation domain VA249_39890 PF01546 Peptidase family M20/M25/M40 VA249_39900 PF07670 Nucleoside recognition VA249_39910 PF07670 Nucleoside recognition VA249_39920 PF00128 Alpha amylase, catalytic domain VA249_39930 PF00912 Transglycosylase VA249_39940 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA249_39940 PF02806 Alpha amylase, C-terminal all-beta domain VA249_39940 PF00128 Alpha amylase, catalytic domain VA249_39950 PF02446 4-alpha-glucanotransferase VA249_39960 PF00343 Carbohydrate phosphorylase VA249_39970 PF17874 MalT-like TPR region VA249_39970 PF00196 Bacterial regulatory proteins, luxR family VA249_40000 PF02630 SCO1/SenC VA249_40020 PF00367 phosphotransferase system, EIIB VA249_40020 PF02378 Phosphotransferase system, EIIC VA249_40030 PF03193 RsgA GTPase VA249_40040 PF00375 Sodium:dicarboxylate symporter family VA249_40050 PF08543 Phosphomethylpyrimidine kinase VA249_40070 PF13520 Amino acid permease VA249_40080 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VA249_40080 PF01276 Orn/Lys/Arg decarboxylase, major domain VA249_40080 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VA249_40110 PF17967 Pullulanase N2 domain VA249_40110 PF18494 Pullulanase Ins domain VA249_40110 PF03714 Bacterial pullanase-associated domain VA249_40110 PF11852 Domain of unknown function (DUF3372) VA249_40110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA249_40120 PF02903 Alpha amylase, N-terminal ig-like domain VA249_40120 PF00128 Alpha amylase, catalytic domain VA249_40150 PF02264 LamB porin VA249_40160 PF00128 Alpha amylase, catalytic domain VA249_40160 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA249_40160 PF18390 Glycogen debranching enzyme C-terminal domain VA249_40170 PF00128 Alpha amylase, catalytic domain VA249_40170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA249_40180 PF17158 Membrane-associated sensor, integral membrane domain VA249_40180 PF00990 Diguanylate cyclase, GGDEF domain VA249_40190 PF00239 Resolvase, N terminal domain VA249_40190 PF02796 Helix-turn-helix domain of resolvase VA249_40200 PF07690 Major Facilitator Superfamily VA249_40210 PF00892 EamA-like transporter family VA249_40220 PF00593 TonB dependent receptor VA249_40220 PF07715 TonB-dependent Receptor Plug Domain VA249_40230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_40230 PF03466 LysR substrate binding domain VA249_40240 PF01497 Periplasmic binding protein VA249_40250 PF01032 FecCD transport family VA249_40260 PF01032 FecCD transport family VA249_40270 PF00005 ABC transporter VA249_40280 PF00440 Bacterial regulatory proteins, tetR family VA249_40280 PF08360 QacR-like protein, C-terminal region VA249_40300 PF13533 Biotin-lipoyl like VA249_40350 PF00529 HlyD membrane-fusion protein of T1SS VA249_40350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_40390 PF16325 Peptidase family U32 C-terminal domain VA249_40390 PF01136 Peptidase family U32 VA249_40420 PF00005 ABC transporter VA249_40430 PF12704 MacB-like periplasmic core domain VA249_40430 PF02687 FtsX-like permease family VA249_40460 PF12833 Helix-turn-helix domain VA249_40460 PF02311 AraC-like ligand binding domain VA249_40470 PF10417 C-terminal domain of 1-Cys peroxiredoxin VA249_40470 PF00578 AhpC/TSA family VA249_40480 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA249_40480 PF13192 Thioredoxin domain VA249_40490 PF00313 'Cold-shock' DNA-binding domain VA249_40500 PF00202 Aminotransferase class-III VA249_40510 PF01037 Lrp/AsnC ligand binding domain VA249_40520 PF01321 Creatinase/Prolidase N-terminal domain VA249_40520 PF00557 Metallopeptidase family M24 VA249_40560 PF12833 Helix-turn-helix domain VA249_40570 PF06441 Epoxide hydrolase N terminus VA249_40580 PF12833 Helix-turn-helix domain VA249_40590 PF00270 DEAD/DEAH box helicase VA249_40590 PF00271 Helicase conserved C-terminal domain VA249_40600 PF03786 D-mannonate dehydratase (UxuA) VA249_40610 PF08125 Mannitol dehydrogenase C-terminal domain VA249_40610 PF01232 Mannitol dehydrogenase Rossmann domain VA249_40620 PF02614 Glucuronate isomerase VA249_40630 PF00294 pfkB family carbohydrate kinase VA249_40640 PF01081 KDPG and KHG aldolase VA249_40670 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA249_40670 PF00703 Glycosyl hydrolases family 2 VA249_40670 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA249_40690 PF07729 FCD domain VA249_40690 PF00392 Bacterial regulatory proteins, gntR family VA249_40700 PF03573 outer membrane porin, OprD family VA249_40730 PF00664 ABC transporter transmembrane region VA249_40730 PF00005 ABC transporter VA249_40750 PF01037 Lrp/AsnC ligand binding domain VA249_40800 PF00474 Sodium:solute symporter family VA249_40820 PF00171 Aldehyde dehydrogenase family VA249_40820 PF01619 Proline dehydrogenase VA249_40820 PF14850 DNA-binding domain of Proline dehydrogenase VA249_40820 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VA249_40830 PF12833 Helix-turn-helix domain VA249_40850 PF01243 Pyridoxamine 5'-phosphate oxidase VA249_40850 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VA249_40860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_40860 PF02743 Cache domain VA249_40860 PF00512 His Kinase A (phospho-acceptor) domain VA249_40870 PF00158 Sigma-54 interaction domain VA249_40870 PF00072 Response regulator receiver domain VA249_40870 PF02954 Bacterial regulatory protein, Fis family VA249_40890 PF00529 HlyD membrane-fusion protein of T1SS VA249_40920 PF00664 ABC transporter transmembrane region VA249_40920 PF00005 ABC transporter VA249_40920 PF03412 Peptidase C39 family VA249_40930 PF00664 ABC transporter transmembrane region VA249_40930 PF00005 ABC transporter VA249_40950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA249_40960 PF00132 Bacterial transferase hexapeptide (six repeats) VA249_40980 PF05127 Helicase VA249_40980 PF13718 GNAT acetyltransferase 2 VA249_40990 PF02195 ParB-like nuclease domain VA249_40990 PF08775 ParB family VA249_41000 PF13614 AAA domain VA249_41000 PF18607 ParA helix turn helix domain VA249_41040 PF01709 Transcriptional regulator VA249_41050 PF01098 Cell cycle protein VA249_41070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA249_41080 PF03466 LysR substrate binding domain VA249_41080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_41100 PF00005 ABC transporter VA249_41140 PF07694 5TMR of 5TMR-LYT VA249_41140 PF13492 GAF domain VA249_41140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_41140 PF06580 Histidine kinase VA249_41150 PF04397 LytTr DNA-binding domain VA249_41150 PF00072 Response regulator receiver domain VA249_41170 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA249_41210 PF08534 Redoxin VA249_41220 PF02630 SCO1/SenC VA249_41280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_41280 PF03466 LysR substrate binding domain VA249_41300 PF03616 Sodium/glutamate symporter VA249_41320 PF00005 ABC transporter VA249_41330 PF03616 Sodium/glutamate symporter VA249_41340 PF00884 Sulfatase VA249_41360 PF02278 Polysaccharide lyase family 8, super-sandwich domain VA249_41360 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VA249_41360 PF09093 Lyase, catalytic VA249_41360 PF09092 Lyase, N terminal VA249_41370 PF04055 Radical SAM superfamily VA249_41370 PF13186 Iron-sulfur cluster-binding domain VA249_41380 PF00884 Sulfatase VA249_41400 PF01116 Fructose-bisphosphate aldolase class-II VA249_41410 PF00294 pfkB family carbohydrate kinase VA249_41420 PF01081 KDPG and KHG aldolase VA249_41480 PF00873 AcrB/AcrD/AcrF family VA249_41490 PF13533 Biotin-lipoyl like VA249_41520 PF09092 Lyase, N terminal VA249_41520 PF09093 Lyase, catalytic VA249_41520 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VA249_41520 PF02278 Polysaccharide lyase family 8, super-sandwich domain VA249_41530 PF09093 Lyase, catalytic VA249_41530 PF09092 Lyase, N terminal VA249_41530 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VA249_41530 PF02278 Polysaccharide lyase family 8, super-sandwich domain VA249_41560 PF13737 Transposase DDE domain VA249_41590 PF00884 Sulfatase VA249_41600 PF00455 DeoR C terminal sensor domain VA249_41600 PF08220 DeoR-like helix-turn-helix domain VA249_41610 PF08013 Tagatose 6 phosphate kinase VA249_41620 PF01380 SIS domain VA249_41630 PF03830 PTS system sorbose subfamily IIB component VA249_41640 PF03609 PTS system sorbose-specific iic component VA249_41650 PF03613 PTS system mannose/fructose/sorbose family IID component VA249_41660 PF03610 PTS system fructose IIA component VA249_41670 PF01979 Amidohydrolase family VA249_41680 PF04962 KduI/IolB family VA249_41700 PF07470 Glycosyl Hydrolase Family 88 VA249_41720 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VA249_41750 PF03466 LysR substrate binding domain VA249_41750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA249_41780 PF00730 HhH-GPD superfamily base excision DNA repair protein VA249_41780 PF06029 AlkA N-terminal domain VA249_41790 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VA249_41790 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VA249_41810 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VA249_41820 PF03600 Citrate transporter VA249_41830 PF01168 Alanine racemase, N-terminal domain VA249_41830 PF00842 Alanine racemase, C-terminal domain VA249_41830 PF01757 Acyltransferase family VA249_41870 PF06865 Pyrimidine/purine nucleoside phosphorylase VA249_41890 PF17912 MalK OB fold domain VA249_41890 PF00005 ABC transporter VA249_41920 PF17912 MalK OB fold domain VA249_41920 PF00005 ABC transporter VA249_41940 PF00528 Binding-protein-dependent transport system inner membrane component VA249_41950 PF00528 Binding-protein-dependent transport system inner membrane component VA249_41960 PF00331 Glycosyl hydrolase family 10 VA249_41970 PF18448 Carbohydrate binding domain VA249_41970 PF03442 Carbohydrate binding domain X2 VA249_41970 PF00150 Cellulase (glycosyl hydrolase family 5) VA249_41980 PF01263 Aldose 1-epimerase VA249_41990 PF01915 Glycosyl hydrolase family 3 C-terminal domain VA249_41990 PF00933 Glycosyl hydrolase family 3 N terminal domain VA249_41990 PF14310 Fibronectin type III-like domain VA249_42000 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain VA249_42000 PF04616 Glycosyl hydrolases family 43 VA249_42050 PF00580 UvrD/REP helicase N-terminal domain VA249_42050 PF13361 UvrD-like helicase C-terminal domain VA249_42420 PF17149 Periplasmic sensor domain found in signal transduction proteins VA249_42420 PF00672 HAMP domain VA249_42420 PF00512 His Kinase A (phospho-acceptor) domain VA249_42420 PF01627 Hpt domain VA249_42420 PF00072 Response regulator receiver domain VA249_42420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA249_42480 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VA249_42480 PF18074 Primosomal protein N C-terminal domain VA249_42480 PF17764 3′ DNA-binding domain (3′BD) VA249_42480 PF00271 Helicase conserved C-terminal domain VA249_42480 PF00270 DEAD/DEAH box helicase VA249_42710 PF00580 UvrD/REP helicase N-terminal domain VA249_42710 PF13361 UvrD-like helicase C-terminal domain VA249_42910 PF01145 SPFH domain / Band 7 family VA249_42910 PF16200 C-terminal region of band_7 VA249_42970 PF00929 Exonuclease VA249_43150 PF11799 impB/mucB/samB family C-terminal domain VA249_43150 PF00817 impB/mucB/samB family VA249_43170 PF01527 Transposase VA249_43180 PF00665 Integrase core domain VA249_43200 PF10544 T5orf172 domain VA249_43410 PF01555 DNA methylase VA249_43450 PF12833 Helix-turn-helix domain VA249_43450 PF02311 AraC-like ligand binding domain VA249_43470 PF02610 L-arabinose isomerase VA249_43470 PF11762 L-arabinose isomerase C-terminal domain VA249_43480 PF00596 Class II Aldolase and Adducin N-terminal domain VA249_43490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA249_43490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA249_43510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA249_43520 PF00005 ABC transporter VA249_43530 PF02653 Branched-chain amino acid transport system / permease component VA249_43550 PF13333 Integrase core domain VA249_43550 PF00665 Integrase core domain VA249_43550 PF13276 HTH-like domain VA249_43570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_43570 PF00672 HAMP domain VA249_43570 PF12729 Four helix bundle sensory module for signal transduction VA249_43580 PF00288 GHMP kinases N terminal domain VA249_43580 PF10509 Galactokinase galactose-binding signature VA249_43580 PF08544 GHMP kinases C terminal VA249_43590 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VA249_43590 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VA249_43600 PF16363 GDP-mannose 4,6 dehydratase VA249_43610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA249_43610 PF00672 HAMP domain VA249_43610 PF12729 Four helix bundle sensory module for signal transduction VA249_43630 PF13358 DDE superfamily endonuclease VA249_43640 PF02264 LamB porin VA249_43650 PF02264 LamB porin VA249_43660 PF08533 Beta-galactosidase C-terminal domain VA249_43660 PF02449 Beta-galactosidase VA249_43660 PF08532 Beta-galactosidase trimerisation domain VA249_43670 PF07745 Glycosyl hydrolase family 53 VA249_43680 PF00528 Binding-protein-dependent transport system inner membrane component VA249_43690 PF00528 Binding-protein-dependent transport system inner membrane component VA249_43700 PF13416 Bacterial extracellular solute-binding protein VA249_43710 PF00005 ABC transporter VA249_43710 PF17912 MalK OB fold domain VA249_43720 PF00356 Bacterial regulatory proteins, lacI family VA249_43730 PF07745 Glycosyl hydrolase family 53 VA249_43740 PF00248 Aldo/keto reductase family VA249_43750 PF00248 Aldo/keto reductase family VA249_43790 PF13610 DDE domain VA249_43800 PF00302 Chloramphenicol acetyltransferase VA249_43810 PF01609 Transposase DDE domain VA249_43810 PF05598 Transposase domain (DUF772) VA249_43830 PF00809 Pterin binding enzyme VA249_43840 PF07690 Major Facilitator Superfamily VA249_44000 PF00679 Elongation factor G C-terminus VA249_44000 PF14492 Elongation Factor G, domain II VA249_44000 PF03764 Elongation factor G, domain IV VA249_44000 PF00009 Elongation factor Tu GTP binding domain VA249_44020 PF12833 Helix-turn-helix domain VA249_44030 PF00440 Bacterial regulatory proteins, tetR family VA249_44040 PF07690 Major Facilitator Superfamily VA249_44050 PF00440 Bacterial regulatory proteins, tetR family VA249_44050 PF02909 Tetracyclin repressor-like, C-terminal domain VA249_44090 PF03616 Sodium/glutamate symporter VA249_44260 PF00528 Binding-protein-dependent transport system inner membrane component VA249_44330 PF00005 ABC transporter VA249_44580 PF13614 AAA domain VA249_44870 PF05922 Peptidase inhibitor I9 VA249_44870 PF00082 Subtilase family VA249_45060 PF01068 ATP dependent DNA ligase domain VA249_45060 PF14743 DNA ligase OB-like domain VA249_45170 PF06122 Conjugative relaxosome accessory transposon protein VA249_45220 PF06174 Protein of unknown function (DUF987) VA249_45350 PF08406 CbbQ/NirQ/NorQ C-terminal VA249_45350 PF07728 AAA domain (dynein-related subfamily) VA249_45430 PF02899 Phage integrase, N-terminal SAM-like domain VA249_45430 PF00589 Phage integrase family VA249_45580 PF06986 Type-1V conjugative transfer system mating pair stabilisation VA249_45620 PF06834 TraU protein VA249_45690 PF03743 Bacterial conjugation TrbI-like protein VA249_46110 PF01726 LexA DNA binding domain VA249_46110 PF00717 Peptidase S24-like VA249_46120 PF00817 impB/mucB/samB family VA249_46120 PF11799 impB/mucB/samB family C-terminal domain VA249_46120 PF13438 Domain of unknown function (DUF4113) VA249_46120 PF11798 IMS family HHH motif