locus-tag class description AL539_00010 PF00691 OmpA family AL539_00010 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL539_00070 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_00070 PF00004 ATPase family associated with various cellular activities (AAA) AL539_00070 PF17871 AAA lid domain AL539_00070 PF07724 AAA domain (Cdc48 subfamily) AL539_00080 PF04717 Type VI secretion system, phage-baseplate injector AL539_00080 PF16671 Actin cross-linking domain AL539_00095 PF00149 Calcineurin-like phosphoesterase AL539_00095 PF12320 Type 5 capsule protein repressor C-terminal domain AL539_00100 PF13476 AAA domain AL539_00110 PF08212 Lipocalin-like domain AL539_00120 PF03606 C4-dicarboxylate anaerobic carrier AL539_00130 PF01212 Beta-eliminating lyase AL539_00140 PF07728 AAA domain (dynein-related subfamily) AL539_00140 PF17868 AAA lid domain AL539_00140 PF12592 Protein of unknown function (DUF3763) AL539_00145 PF05762 VWA domain containing CoxE-like protein AL539_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_00160 PF03466 LysR substrate binding domain AL539_00165 PF01565 FAD binding domain AL539_00165 PF09330 D-lactate dehydrogenase, membrane binding AL539_00180 PF00842 Alanine racemase, C-terminal domain AL539_00180 PF01168 Alanine racemase, N-terminal domain AL539_00185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_00185 PF00672 HAMP domain AL539_00200 PF00128 Alpha amylase, catalytic domain AL539_00200 PF09154 Domain of unknown function (DUF1939) AL539_00235 PF00296 Luciferase-like monooxygenase AL539_00240 PF00563 EAL domain AL539_00240 PF03707 Bacterial signalling protein N terminal repeat AL539_00240 PF00990 Diguanylate cyclase, GGDEF domain AL539_00250 PF00563 EAL domain AL539_00250 PF03707 Bacterial signalling protein N terminal repeat AL539_00250 PF00990 Diguanylate cyclase, GGDEF domain AL539_00260 PF14760 Rnk N-terminus AL539_00260 PF01272 Transcription elongation factor, GreA/GreB, C-term AL539_00265 PF04324 BFD-like [2Fe-2S] binding domain AL539_00265 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL539_00265 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL539_00265 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_00265 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL539_00270 PF13806 Rieske-like [2Fe-2S] domain AL539_00275 PF01226 Formate/nitrite transporter AL539_00280 PF10414 Sirohaem synthase dimerisation region AL539_00280 PF14824 Sirohaem biosynthesis protein central AL539_00280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_00295 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL539_00310 PF00593 TonB dependent receptor AL539_00310 PF07715 TonB-dependent Receptor Plug Domain AL539_00320 PF13302 Acetyltransferase (GNAT) domain AL539_00325 PF11756 Nitrous oxide-stimulated promoter AL539_00330 PF07690 Major Facilitator Superfamily AL539_00335 PF00085 Thioredoxin AL539_00340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL539_00340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL539_00360 PF01238 Phosphomannose isomerase type I AL539_00365 PF07690 Major Facilitator Superfamily AL539_00370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_00370 PF07730 Histidine kinase AL539_00370 PF05231 MASE1 AL539_00375 PF00072 Response regulator receiver domain AL539_00375 PF00196 Bacterial regulatory proteins, luxR family AL539_00380 PF07690 Major Facilitator Superfamily AL539_00385 PF02634 FdhD/NarQ family AL539_00390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_00390 PF03466 LysR substrate binding domain AL539_00400 PF00384 Molybdopterin oxidoreductase AL539_00415 PF02567 Phenazine biosynthesis-like protein AL539_00420 PF01177 Asp/Glu/Hydantoin racemase AL539_00425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_00425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_00435 PF04143 Sulphur transport AL539_00455 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL539_00455 PF03477 ATP cone domain AL539_00465 PF01554 MatE AL539_00470 PF12833 Helix-turn-helix domain AL539_00470 PF12852 Cupin AL539_00475 PF00155 Aminotransferase class I and II AL539_00480 PF08443 RimK-like ATP-grasp domain AL539_00480 PF18030 RimK PreATP-grasp domain AL539_00490 PF04076 Bacterial OB fold (BOF) protein AL539_00495 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL539_00495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL539_00505 PF00528 Binding-protein-dependent transport system inner membrane component AL539_00510 PF00005 ABC transporter AL539_00510 PF03459 TOBE domain AL539_00520 PF00990 Diguanylate cyclase, GGDEF domain AL539_00520 PF00360 Phytochrome region AL539_00520 PF00563 EAL domain AL539_00520 PF01590 GAF domain AL539_00525 PF00072 Response regulator receiver domain AL539_00525 PF00990 Diguanylate cyclase, GGDEF domain AL539_00555 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL539_00555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL539_00555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL539_00560 PF02233 NAD(P) transhydrogenase beta subunit AL539_00570 PF00486 Transcriptional regulatory protein, C terminal AL539_00570 PF00072 Response regulator receiver domain AL539_00585 PF03701 Uncharacterised protein family (UPF0181) AL539_00590 PF00582 Universal stress protein family AL539_00600 PF03466 LysR substrate binding domain AL539_00600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_00620 PF01253 Translation initiation factor SUI1 AL539_00630 PF01820 D-ala D-ala ligase N-terminus AL539_00630 PF07478 D-ala D-ala ligase C-terminus AL539_00635 PF05036 Sporulation related domain AL539_00640 PF13607 Succinyl-CoA ligase like flavodoxin domain AL539_00640 PF13380 CoA binding domain AL539_00640 PF00583 Acetyltransferase (GNAT) family AL539_00645 PF03466 LysR substrate binding domain AL539_00645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_00650 PF04886 PT repeat AL539_00650 PF07715 TonB-dependent Receptor Plug Domain AL539_00650 PF00593 TonB dependent receptor AL539_00660 PF16363 GDP-mannose 4,6 dehydratase AL539_00665 PF13426 PAS domain AL539_00665 PF08448 PAS fold AL539_00665 PF00563 EAL domain AL539_00665 PF08447 PAS fold AL539_00665 PF05231 MASE1 AL539_00665 PF00990 Diguanylate cyclase, GGDEF domain AL539_00670 PF03746 LamB/YcsF family AL539_00675 PF02682 Carboxyltransferase domain, subdomain C and D AL539_00680 PF02626 Carboxyltransferase domain, subdomain A and B AL539_00695 PF00005 ABC transporter AL539_00700 PF13472 GDSL-like Lipase/Acylhydrolase family AL539_00705 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL539_00705 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL539_00705 PF07055 Enoyl reductase FAD binding domain AL539_00710 PF00990 Diguanylate cyclase, GGDEF domain AL539_00710 PF03707 Bacterial signalling protein N terminal repeat AL539_00710 PF00563 EAL domain AL539_00710 PF13188 PAS domain AL539_00720 PF01556 DnaJ C terminal domain AL539_00720 PF00684 DnaJ central domain AL539_00720 PF00226 DnaJ domain AL539_00745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_00745 PF12793 Sugar transport-related sRNA regulator N-term AL539_00755 PF03061 Thioesterase superfamily AL539_00770 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_00775 PF12262 Bacterial virulence factor lipase N-terminal AL539_00795 PF03741 Integral membrane protein TerC family AL539_00800 PF00149 Calcineurin-like phosphoesterase AL539_00800 PF02872 5'-nucleotidase, C-terminal domain AL539_00805 PF11398 Protein of unknown function (DUF2813) AL539_00810 PF06496 Protein of unknown function (DUF1097) AL539_00815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_00815 PF03466 LysR substrate binding domain AL539_00820 PF01226 Formate/nitrite transporter AL539_00825 PF04264 YceI-like domain AL539_00830 PF01292 Prokaryotic cytochrome b561 AL539_00850 PF00271 Helicase conserved C-terminal domain AL539_00850 PF00270 DEAD/DEAH box helicase AL539_00855 PF04336 Acyl carrier protein phosphodiesterase AL539_00865 PF12729 Four helix bundle sensory module for signal transduction AL539_00865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_00865 PF00672 HAMP domain AL539_00875 PF13419 Haloacid dehalogenase-like hydrolase AL539_00890 PF00294 pfkB family carbohydrate kinase AL539_00895 PF01268 Formate--tetrahydrofolate ligase AL539_00900 PF00483 Nucleotidyl transferase AL539_00905 PF06483 Chitinase C AL539_00905 PF00704 Glycosyl hydrolases family 18 AL539_00915 PF06719 AraC-type transcriptional regulator N-terminus AL539_00915 PF12833 Helix-turn-helix domain AL539_00920 PF00465 Iron-containing alcohol dehydrogenase AL539_00930 PF00005 ABC transporter AL539_00935 PF00528 Binding-protein-dependent transport system inner membrane component AL539_00940 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_00945 PF00528 Binding-protein-dependent transport system inner membrane component AL539_00950 PF00563 EAL domain AL539_00950 PF01590 GAF domain AL539_00950 PF00989 PAS fold AL539_00950 PF00990 Diguanylate cyclase, GGDEF domain AL539_00965 PF00356 Bacterial regulatory proteins, lacI family AL539_00965 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL539_00970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL539_00970 PF00381 PTS HPr component phosphorylation site AL539_00975 PF00294 pfkB family carbohydrate kinase AL539_00980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_00980 PF02378 Phosphotransferase system, EIIC AL539_00990 PF00873 AcrB/AcrD/AcrF family AL539_01010 PF01571 Aminomethyltransferase folate-binding domain AL539_01010 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL539_01020 PF00464 Serine hydroxymethyltransferase AL539_01025 PF01597 Glycine cleavage H-protein AL539_01030 PF02347 Glycine cleavage system P-protein AL539_01035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_01045 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL539_01045 PF00753 Metallo-beta-lactamase superfamily AL539_01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_01050 PF03466 LysR substrate binding domain AL539_01055 PF00892 EamA-like transporter family AL539_01060 PF02627 Carboxymuconolactone decarboxylase family AL539_01065 PF12833 Helix-turn-helix domain AL539_01090 PF14579 Helix-hairpin-helix motif AL539_01090 PF11490 DNA polymerase III polC-type N-terminus II AL539_01090 PF00929 Exonuclease AL539_01090 PF02811 PHP domain AL539_01090 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL539_01090 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL539_01100 PF00664 ABC transporter transmembrane region AL539_01100 PF00005 ABC transporter AL539_01120 PF02253 Phospholipase A1 AL539_01135 PF00376 MerR family regulatory protein AL539_01135 PF09278 MerR, DNA binding AL539_01140 PF01327 Polypeptide deformylase AL539_01175 PF00571 CBS domain AL539_01175 PF01769 Divalent cation transporter AL539_01175 PF03448 MgtE intracellular N domain AL539_01195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_01200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_01210 PF01757 Acyltransferase family AL539_01225 PF00141 Peroxidase AL539_01230 PF13187 4Fe-4S dicluster domain AL539_01230 PF01645 Conserved region in glutamate synthase AL539_01240 PF00171 Aldehyde dehydrogenase family AL539_01255 PF00892 EamA-like transporter family AL539_01260 PF00893 Small Multidrug Resistance protein AL539_01280 PF00892 EamA-like transporter family AL539_01290 PF07963 Prokaryotic N-terminal methylation motif AL539_01290 PF08334 Type II secretion system (T2SS), protein G AL539_01295 PF01584 CheW-like domain AL539_01295 PF00072 Response regulator receiver domain AL539_01305 PF00486 Transcriptional regulatory protein, C terminal AL539_01305 PF00072 Response regulator receiver domain AL539_01315 PF00990 Diguanylate cyclase, GGDEF domain AL539_01320 PF00196 Bacterial regulatory proteins, luxR family AL539_01320 PF00072 Response regulator receiver domain AL539_01325 PF00563 EAL domain AL539_01325 PF03707 Bacterial signalling protein N terminal repeat AL539_01325 PF13188 PAS domain AL539_01325 PF00990 Diguanylate cyclase, GGDEF domain AL539_01330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_01330 PF00512 His Kinase A (phospho-acceptor) domain AL539_01330 PF00072 Response regulator receiver domain AL539_01330 PF09456 RcsC Alpha-Beta-Loop (ABL) AL539_01335 PF01926 50S ribosome-binding GTPase AL539_01340 PF00155 Aminotransferase class I and II AL539_01345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_01345 PF00072 Response regulator receiver domain AL539_01355 PF00814 Glycoprotease family AL539_01355 PF00583 Acetyltransferase (GNAT) family AL539_01365 PF03606 C4-dicarboxylate anaerobic carrier AL539_01380 PF08774 VRR-NUC domain AL539_01380 PF18081 Fanconi anemia-associated nuclease SAP domain AL539_01390 PF04076 Bacterial OB fold (BOF) protein AL539_01395 PF00781 Diacylglycerol kinase catalytic domain AL539_01400 PF03466 LysR substrate binding domain AL539_01400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_01405 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_01420 PF00092 von Willebrand factor type A domain AL539_01435 PF07726 ATPase family associated with various cellular activities (AAA) AL539_01435 PF17863 AAA lid domain AL539_01440 PF13186 Iron-sulfur cluster-binding domain AL539_01440 PF04055 Radical SAM superfamily AL539_01445 PF16385 Domain of unknown function AL539_01445 PF00884 Sulfatase AL539_01450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_01450 PF03466 LysR substrate binding domain AL539_01455 PF00884 Sulfatase AL539_01460 PF00072 Response regulator receiver domain AL539_01460 PF00486 Transcriptional regulatory protein, C terminal AL539_01475 PF00672 HAMP domain AL539_01475 PF01627 Hpt domain AL539_01475 PF00512 His Kinase A (phospho-acceptor) domain AL539_01475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_01475 PF00072 Response regulator receiver domain AL539_01480 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL539_01485 PF02142 MGS-like domain AL539_01490 PF12462 DNA helicase IV / RNA helicase N terminal AL539_01490 PF13361 UvrD-like helicase C-terminal domain AL539_01490 PF00580 UvrD/REP helicase N-terminal domain AL539_01495 PF12805 FUSC-like inner membrane protein yccS AL539_01530 PF00593 TonB dependent receptor AL539_01530 PF07715 TonB-dependent Receptor Plug Domain AL539_01540 PF13411 MerR HTH family regulatory protein AL539_01545 PF00005 ABC transporter AL539_01550 PF01032 FecCD transport family AL539_01555 PF01032 FecCD transport family AL539_01560 PF01497 Periplasmic binding protein AL539_01570 PF01048 Phosphorylase superfamily AL539_01575 PF04973 Nicotinamide mononucleotide transporter AL539_01585 PF00356 Bacterial regulatory proteins, lacI family AL539_01590 PF00294 pfkB family carbohydrate kinase AL539_01595 PF13407 Periplasmic binding protein domain AL539_01600 PF02653 Branched-chain amino acid transport system / permease component AL539_01605 PF00005 ABC transporter AL539_01610 PF05025 RbsD / FucU transport protein family AL539_01615 PF00990 Diguanylate cyclase, GGDEF domain AL539_01615 PF00563 EAL domain AL539_01660 PF04116 Fatty acid hydroxylase superfamily AL539_01670 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL539_01670 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL539_01680 PF00072 Response regulator receiver domain AL539_01680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_01680 PF00512 His Kinase A (phospho-acceptor) domain AL539_01680 PF09308 LuxQ, periplasmic AL539_01685 PF00034 Cytochrome c AL539_01685 PF03150 Di-haem cytochrome c peroxidase AL539_01695 PF16200 C-terminal region of band_7 AL539_01695 PF01145 SPFH domain / Band 7 family AL539_01705 PF00881 Nitroreductase family AL539_01710 PF00571 CBS domain AL539_01710 PF00005 ABC transporter AL539_01715 PF00528 Binding-protein-dependent transport system inner membrane component AL539_01720 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL539_01725 PF00732 GMC oxidoreductase AL539_01725 PF05199 GMC oxidoreductase AL539_01730 PF00171 Aldehyde dehydrogenase family AL539_01735 PF00440 Bacterial regulatory proteins, tetR family AL539_01735 PF13977 BetI-type transcriptional repressor, C-terminal AL539_01740 PF00990 Diguanylate cyclase, GGDEF domain AL539_01740 PF00072 Response regulator receiver domain AL539_01750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_01750 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL539_01760 PF00378 Enoyl-CoA hydratase/isomerase AL539_01765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_01765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_01765 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_01770 PF00171 Aldehyde dehydrogenase family AL539_01775 PF02803 Thiolase, C-terminal domain AL539_01775 PF00108 Thiolase, N-terminal domain AL539_01780 PF09278 MerR, DNA binding AL539_01780 PF00376 MerR family regulatory protein AL539_01785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_01785 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_01785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_01790 PF01039 Carboxyl transferase domain AL539_01795 PF00378 Enoyl-CoA hydratase/isomerase AL539_01800 PF00289 Biotin carboxylase, N-terminal domain AL539_01800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL539_01800 PF02785 Biotin carboxylase C-terminal domain AL539_01800 PF00364 Biotin-requiring enzyme AL539_01805 PF00682 HMGL-like AL539_01815 PF12795 Mechanosensitive ion channel porin domain AL539_01815 PF00924 Mechanosensitive ion channel AL539_01815 PF12794 Mechanosensitive ion channel inner membrane domain 1 AL539_01825 PF12464 Maltose acetyltransferase AL539_01825 PF14602 Hexapeptide repeat of succinyl-transferase AL539_01830 PF00392 Bacterial regulatory proteins, gntR family AL539_01830 PF00155 Aminotransferase class I and II AL539_01835 PF01654 Cytochrome bd terminal oxidase subunit I AL539_01840 PF02322 Cytochrome bd terminal oxidase subunit II AL539_01855 PF13419 Haloacid dehalogenase-like hydrolase AL539_01860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_01860 PF03466 LysR substrate binding domain AL539_01865 PF03306 Alpha-acetolactate decarboxylase AL539_01870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL539_01870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL539_01870 PF00205 Thiamine pyrophosphate enzyme, central domain AL539_01880 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_01910 PF05724 Thiopurine S-methyltransferase (TPMT) AL539_01915 PF14535 AMP-binding enzyme C-terminal domain AL539_01915 PF00501 AMP-binding enzyme AL539_01920 PF00005 ABC transporter AL539_01940 PF00501 AMP-binding enzyme AL539_01945 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL539_01945 PF00005 ABC transporter AL539_01960 PF01012 Electron transfer flavoprotein domain AL539_01965 PF00766 Electron transfer flavoprotein FAD-binding domain AL539_01965 PF01012 Electron transfer flavoprotein domain AL539_01970 PF00501 AMP-binding enzyme AL539_01970 PF13193 AMP-binding enzyme C-terminal domain AL539_01975 PF02378 Phosphotransferase system, EIIC AL539_01975 PF00367 phosphotransferase system, EIIB AL539_01980 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL539_01980 PF02056 Family 4 glycosyl hydrolase AL539_01985 PF00392 Bacterial regulatory proteins, gntR family AL539_01985 PF07702 UTRA domain AL539_01990 PF03334 Na+/H+ antiporter subunit AL539_01995 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AL539_02010 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AL539_02015 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AL539_02015 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AL539_02015 PF13244 Domain of unknown function (DUF4040) AL539_02015 PF00361 Proton-conducting membrane transporter AL539_02025 PF00582 Universal stress protein family AL539_02030 PF00106 short chain dehydrogenase AL539_02035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_02035 PF03466 LysR substrate binding domain AL539_02045 PF07690 Major Facilitator Superfamily AL539_02055 PF00182 Chitinase class I AL539_02100 PF01037 Lrp/AsnC ligand binding domain AL539_02135 PF00069 Protein kinase domain AL539_02160 PF04717 Type VI secretion system, phage-baseplate injector AL539_02165 PF05638 Type VI secretion system effector, Hcp AL539_02170 PF07724 AAA domain (Cdc48 subfamily) AL539_02170 PF00004 ATPase family associated with various cellular activities (AAA) AL539_02170 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_02170 PF17871 AAA lid domain AL539_02175 PF02954 Bacterial regulatory protein, Fis family AL539_02175 PF00072 Response regulator receiver domain AL539_02175 PF00158 Sigma-54 interaction domain AL539_02200 PF01551 Peptidase family M23 AL539_02200 PF01476 LysM domain AL539_02200 PF08525 Opacity-associated protein A N-terminal motif AL539_02230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_02240 PF12833 Helix-turn-helix domain AL539_02245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_02245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL539_02250 PF01238 Phosphomannose isomerase type I AL539_02265 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL539_02265 PF07971 Glycosyl hydrolase family 92 AL539_02270 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL539_02270 PF07971 Glycosyl hydrolase family 92 AL539_02280 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL539_02280 PF07971 Glycosyl hydrolase family 92 AL539_02285 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL539_02285 PF07971 Glycosyl hydrolase family 92 AL539_02310 PF00478 IMP dehydrogenase / GMP reductase domain AL539_02315 PF01256 Carbohydrate kinase AL539_02315 PF03853 YjeF-related protein N-terminus AL539_02325 PF00072 Response regulator receiver domain AL539_02330 PF00248 Aldo/keto reductase family AL539_02345 PF00654 Voltage gated chloride channel AL539_02355 PF01227 GTP cyclohydrolase I AL539_02360 PF00994 Probable molybdopterin binding domain AL539_02360 PF03454 MoeA C-terminal region (domain IV) AL539_02360 PF03453 MoeA N-terminal region (domain I and II) AL539_02365 PF00899 ThiF family AL539_02380 PF00581 Rhodanese-like domain AL539_02400 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL539_02405 PF02780 Transketolase, C-terminal domain AL539_02405 PF02779 Transketolase, pyrimidine binding domain AL539_02405 PF00456 Transketolase, thiamine diphosphate binding domain AL539_02410 PF00672 HAMP domain AL539_02410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_02410 PF12729 Four helix bundle sensory module for signal transduction AL539_02415 PF07690 Major Facilitator Superfamily AL539_02420 PF00793 DAHP synthetase I family AL539_02430 PF00691 OmpA family AL539_02430 PF01389 OmpA-like transmembrane domain AL539_02435 PF13419 Haloacid dehalogenase-like hydrolase AL539_02440 PF00472 RF-1 domain AL539_02445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_02445 PF12729 Four helix bundle sensory module for signal transduction AL539_02445 PF00672 HAMP domain AL539_02450 PF00873 AcrB/AcrD/AcrF family AL539_02455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_02460 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_02465 PF07687 Peptidase dimerisation domain AL539_02465 PF01546 Peptidase family M20/M25/M40 AL539_02480 PF00072 Response regulator receiver domain AL539_02480 PF00196 Bacterial regulatory proteins, luxR family AL539_02485 PF07730 Histidine kinase AL539_02485 PF00672 HAMP domain AL539_02485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_02485 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL539_02490 PF13187 4Fe-4S dicluster domain AL539_02490 PF12838 4Fe-4S dicluster domain AL539_02500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_02500 PF00384 Molybdopterin oxidoreductase AL539_02500 PF01568 Molydopterin dinucleotide binding domain AL539_02505 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL539_02510 PF03264 NapC/NirT cytochrome c family, N-terminal region AL539_02520 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL539_02530 PF02803 Thiolase, C-terminal domain AL539_02530 PF00108 Thiolase, N-terminal domain AL539_02535 PF00106 short chain dehydrogenase AL539_02540 PF01810 LysE type translocator AL539_02550 PF07549 SecD/SecF GG Motif AL539_02550 PF02355 Protein export membrane protein AL539_02555 PF07549 SecD/SecF GG Motif AL539_02555 PF13721 SecD export protein N-terminal TM region AL539_02555 PF02355 Protein export membrane protein AL539_02585 PF01037 Lrp/AsnC ligand binding domain AL539_02605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_02605 PF00529 HlyD membrane-fusion protein of T1SS AL539_02610 PF01047 MarR family AL539_02615 PF09308 LuxQ, periplasmic AL539_02615 PF00072 Response regulator receiver domain AL539_02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_02615 PF00512 His Kinase A (phospho-acceptor) domain AL539_02620 PF13407 Periplasmic binding protein domain AL539_02630 PF01541 GIY-YIG catalytic domain AL539_02635 PF04337 Protein of unknown function, DUF480 AL539_02645 PF04363 Protein of unknown function (DUF496) AL539_02650 PF01554 MatE AL539_02655 PF00672 HAMP domain AL539_02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_02655 PF01627 Hpt domain AL539_02655 PF00512 His Kinase A (phospho-acceptor) domain AL539_02655 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL539_02655 PF00072 Response regulator receiver domain AL539_02660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL539_02660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_02680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_02680 PF03466 LysR substrate binding domain AL539_02695 PF13520 Amino acid permease AL539_02700 PF00392 Bacterial regulatory proteins, gntR family AL539_02700 PF00155 Aminotransferase class I and II AL539_02710 PF00512 His Kinase A (phospho-acceptor) domain AL539_02710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_02710 PF00672 HAMP domain AL539_02710 PF16527 Two-component sensor protein CpxA, periplasmic domain AL539_02715 PF00072 Response regulator receiver domain AL539_02715 PF00486 Transcriptional regulatory protein, C terminal AL539_02735 PF12833 Helix-turn-helix domain AL539_02735 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL539_02745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_02745 PF00529 HlyD membrane-fusion protein of T1SS AL539_02750 PF03109 ABC1 family AL539_02755 PF00571 CBS domain AL539_02755 PF01769 Divalent cation transporter AL539_02755 PF03448 MgtE intracellular N domain AL539_02760 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL539_02765 PF07969 Amidohydrolase family AL539_02770 PF01966 HD domain AL539_02785 PF07690 Major Facilitator Superfamily AL539_02795 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL539_02800 PF00255 Glutathione peroxidase AL539_02815 PF01323 DSBA-like thioredoxin domain AL539_02830 PF00072 Response regulator receiver domain AL539_02830 PF00486 Transcriptional regulatory protein, C terminal AL539_02835 PF16527 Two-component sensor protein CpxA, periplasmic domain AL539_02835 PF00512 His Kinase A (phospho-acceptor) domain AL539_02835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_02835 PF00672 HAMP domain AL539_02845 PF01219 Prokaryotic diacylglycerol kinase AL539_02850 PF08019 Phosphoethanolamine transferase EptA/EptB AL539_02850 PF00884 Sulfatase AL539_02855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL539_02870 PF01734 Patatin-like phospholipase AL539_02875 PF05726 Pirin C-terminal cupin domain AL539_02875 PF02678 Pirin AL539_02880 PF00313 'Cold-shock' DNA-binding domain AL539_02895 PF00962 Adenosine/AMP deaminase AL539_02900 PF08534 Redoxin AL539_02900 PF00462 Glutaredoxin AL539_02910 PF00768 D-alanyl-D-alanine carboxypeptidase AL539_02910 PF07943 Penicillin-binding protein 5, C-terminal domain AL539_02920 PF02798 Glutathione S-transferase, N-terminal domain AL539_02930 PF08244 Glycosyl hydrolases family 32 C terminal AL539_02930 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL539_02935 PF00294 pfkB family carbohydrate kinase AL539_02940 PF00367 phosphotransferase system, EIIB AL539_02940 PF02378 Phosphotransferase system, EIIC AL539_02945 PF00356 Bacterial regulatory proteins, lacI family AL539_02950 PF11471 Maltoporin periplasmic N-terminal extension AL539_02950 PF02264 LamB porin AL539_03000 PF03466 LysR substrate binding domain AL539_03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03005 PF12833 Helix-turn-helix domain AL539_03005 PF01497 Periplasmic binding protein AL539_03010 PF00155 Aminotransferase class I and II AL539_03040 PF00270 DEAD/DEAH box helicase AL539_03040 PF00271 Helicase conserved C-terminal domain AL539_03050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03050 PF03466 LysR substrate binding domain AL539_03055 PF03466 LysR substrate binding domain AL539_03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03065 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_03070 PF08240 Alcohol dehydrogenase GroES-like domain AL539_03070 PF00107 Zinc-binding dehydrogenase AL539_03095 PF01321 Creatinase/Prolidase N-terminal domain AL539_03095 PF00557 Metallopeptidase family M24 AL539_03100 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL539_03105 PF01037 Lrp/AsnC ligand binding domain AL539_03110 PF00171 Aldehyde dehydrogenase family AL539_03115 PF00202 Aminotransferase class-III AL539_03120 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL539_03135 PF03466 LysR substrate binding domain AL539_03135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03145 PF00710 Asparaginase, N-terminal AL539_03145 PF17763 Glutaminase/Asparaginase C-terminal domain AL539_03150 PF03618 Kinase/pyrophosphorylase AL539_03155 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL539_03155 PF02896 PEP-utilising enzyme, TIM barrel domain AL539_03155 PF00391 PEP-utilising enzyme, mobile domain AL539_03165 PF00072 Response regulator receiver domain AL539_03165 PF00196 Bacterial regulatory proteins, luxR family AL539_03170 PF00579 tRNA synthetases class I (W and Y) AL539_03175 PF13416 Bacterial extracellular solute-binding protein AL539_03190 PF00703 Glycosyl hydrolases family 2 AL539_03190 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL539_03190 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AL539_03190 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL539_03195 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_03200 PF07702 UTRA domain AL539_03200 PF00392 Bacterial regulatory proteins, gntR family AL539_03225 PF00005 ABC transporter AL539_03225 PF08402 TOBE domain AL539_03245 PF00873 AcrB/AcrD/AcrF family AL539_03265 PF00873 AcrB/AcrD/AcrF family AL539_03275 PF13091 PLD-like domain AL539_03280 PF00398 Ribosomal RNA adenine dimethylase AL539_03300 PF09278 MerR, DNA binding AL539_03300 PF00376 MerR family regulatory protein AL539_03315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03315 PF03466 LysR substrate binding domain AL539_03325 PF13378 Enolase C-terminal domain-like AL539_03325 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL539_03335 PF03144 Elongation factor Tu domain 2 AL539_03335 PF00679 Elongation factor G C-terminus AL539_03335 PF00009 Elongation factor Tu GTP binding domain AL539_03335 PF03764 Elongation factor G, domain IV AL539_03335 PF14492 Elongation Factor G, domain II AL539_03360 PF02001 Protein of unknown function DUF134 AL539_03370 PF00528 Binding-protein-dependent transport system inner membrane component AL539_03375 PF00005 ABC transporter AL539_03375 PF00571 CBS domain AL539_03380 PF04170 NlpE N-terminal domain AL539_03380 PF17185 NlpE C-terminal OB domain AL539_03385 PF06629 MltA-interacting protein MipA AL539_03400 PF03466 LysR substrate binding domain AL539_03400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03425 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL539_03425 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL539_03435 PF00857 Isochorismatase family AL539_03450 PF08220 DeoR-like helix-turn-helix domain AL539_03450 PF00455 DeoR C terminal sensor domain AL539_03455 PF01641 SelR domain AL539_03455 PF01625 Peptide methionine sulfoxide reductase AL539_03460 PF03060 Nitronate monooxygenase AL539_03465 PF13520 Amino acid permease AL539_03470 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AL539_03475 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AL539_03480 PF12833 Helix-turn-helix domain AL539_03485 PF00440 Bacterial regulatory proteins, tetR family AL539_03485 PF08359 YsiA-like protein, C-terminal region AL539_03500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03500 PF03466 LysR substrate binding domain AL539_03505 PF01810 LysE type translocator AL539_03515 PF00118 TCP-1/cpn60 chaperonin family AL539_03520 PF00166 Chaperonin 10 Kd subunit AL539_03525 PF00581 Rhodanese-like domain AL539_03540 PF01070 FMN-dependent dehydrogenase AL539_03560 PF00669 Bacterial flagellin N-terminal helical region AL539_03565 PF00460 Flagella basal body rod protein AL539_03565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_03570 PF10135 Rod binding protein AL539_03570 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL539_03575 PF02119 Flagellar P-ring protein AL539_03580 PF02107 Flagellar L-ring protein AL539_03585 PF00460 Flagella basal body rod protein AL539_03585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_03590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_03590 PF00460 Flagella basal body rod protein AL539_03595 PF07559 Flagellar basal body protein FlaE AL539_03595 PF00460 Flagella basal body rod protein AL539_03595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_03600 PF13861 FlgD Tudor-like domain AL539_03600 PF03963 Flagellar hook capping protein - N-terminal region AL539_03600 PF13860 FlgD Ig-like domain AL539_03605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_03605 PF00460 Flagella basal body rod protein AL539_03610 PF00460 Flagella basal body rod protein AL539_03630 PF01464 Transglycosylase SLT domain AL539_03635 PF08264 Anticodon-binding domain of tRNA AL539_03635 PF00133 tRNA synthetases class I (I, L, M and V) AL539_03655 PF03313 Serine dehydratase alpha chain AL539_03655 PF03315 Serine dehydratase beta chain AL539_03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03665 PF03466 LysR substrate binding domain AL539_03670 PF03466 LysR substrate binding domain AL539_03670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03675 PF01389 OmpA-like transmembrane domain AL539_03675 PF00691 OmpA family AL539_03680 PF00246 Zinc carboxypeptidase AL539_03680 PF18027 Cytosolic carboxypeptidase N-terminal domain AL539_03685 PF01266 FAD dependent oxidoreductase AL539_03695 PF04393 Protein of unknown function (DUF535) AL539_03710 PF00392 Bacterial regulatory proteins, gntR family AL539_03710 PF07702 UTRA domain AL539_03715 PF00528 Binding-protein-dependent transport system inner membrane component AL539_03720 PF00005 ABC transporter AL539_03730 PF00266 Aminotransferase class-V AL539_03740 PF13419 Haloacid dehalogenase-like hydrolase AL539_03755 PF00657 GDSL-like Lipase/Acylhydrolase AL539_03760 PF00440 Bacterial regulatory proteins, tetR family AL539_03770 PF02321 Outer membrane efflux protein AL539_03775 PF12704 MacB-like periplasmic core domain AL539_03775 PF02687 FtsX-like permease family AL539_03775 PF00005 ABC transporter AL539_03785 PF13737 Transposase DDE domain AL539_03795 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_03800 PF00194 Eukaryotic-type carbonic anhydrase AL539_03805 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL539_03820 PF13419 Haloacid dehalogenase-like hydrolase AL539_03825 PF03466 LysR substrate binding domain AL539_03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_03860 PF14602 Hexapeptide repeat of succinyl-transferase AL539_03860 PF12464 Maltose acetyltransferase AL539_03865 PF02566 OsmC-like protein AL539_03870 PF01625 Peptide methionine sulfoxide reductase AL539_03870 PF01641 SelR domain AL539_03885 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL539_03890 PF03441 FAD binding domain of DNA photolyase AL539_03890 PF00875 DNA photolyase AL539_03895 PF00990 Diguanylate cyclase, GGDEF domain AL539_03910 PF00563 EAL domain AL539_03910 PF00990 Diguanylate cyclase, GGDEF domain AL539_03910 PF03707 Bacterial signalling protein N terminal repeat AL539_03925 PF07670 Nucleoside recognition AL539_03925 PF07662 Na+ dependent nucleoside transporter C-terminus AL539_03925 PF01773 Na+ dependent nucleoside transporter N-terminus AL539_03945 PF01212 Beta-eliminating lyase AL539_03950 PF03116 NQR2, RnfD, RnfE family AL539_03955 PF01654 Cytochrome bd terminal oxidase subunit I AL539_03960 PF02322 Cytochrome bd terminal oxidase subunit II AL539_03975 PF01266 FAD dependent oxidoreductase AL539_03995 PF05525 Branched-chain amino acid transport protein AL539_04000 PF00990 Diguanylate cyclase, GGDEF domain AL539_04005 PF02954 Bacterial regulatory protein, Fis family AL539_04005 PF00072 Response regulator receiver domain AL539_04005 PF00158 Sigma-54 interaction domain AL539_04010 PF00512 His Kinase A (phospho-acceptor) domain AL539_04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_04010 PF02743 Cache domain AL539_04015 PF00232 Glycosyl hydrolase family 1 AL539_04030 PF03466 LysR substrate binding domain AL539_04030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_04040 PF12706 Beta-lactamase superfamily domain AL539_04055 PF08443 RimK-like ATP-grasp domain AL539_04055 PF18030 RimK PreATP-grasp domain AL539_04060 PF18030 RimK PreATP-grasp domain AL539_04060 PF08443 RimK-like ATP-grasp domain AL539_04065 PF00753 Metallo-beta-lactamase superfamily AL539_04070 PF17810 Arginine decarboxylase helical bundle domain AL539_04070 PF17944 Arginine decarboxylase C-terminal helical extension AL539_04070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL539_04075 PF00491 Arginase family AL539_04080 PF07690 Major Facilitator Superfamily AL539_04085 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL539_04085 PF00326 Prolyl oligopeptidase family AL539_04100 PF00950 ABC 3 transport family AL539_04105 PF00005 ABC transporter AL539_04110 PF01297 Zinc-uptake complex component A periplasmic AL539_04150 PF02472 Biopolymer transport protein ExbD/TolR AL539_04155 PF01618 MotA/TolQ/ExbB proton channel family AL539_04160 PF01618 MotA/TolQ/ExbB proton channel family AL539_04170 PF07715 TonB-dependent Receptor Plug Domain AL539_04170 PF00593 TonB dependent receptor AL539_04175 PF16750 Sensor domain of 2-component histidine kinase AL539_04175 PF00512 His Kinase A (phospho-acceptor) domain AL539_04175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_04175 PF00672 HAMP domain AL539_04180 PF00486 Transcriptional regulatory protein, C terminal AL539_04180 PF00072 Response regulator receiver domain AL539_04185 PF03009 Glycerophosphoryl diester phosphodiesterase family AL539_04195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL539_04195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_04200 PF10928 Protein of unknown function (DUF2810) AL539_04255 PF04013 Putative SAM-dependent RNA methyltransferase AL539_04260 PF01523 Putative modulator of DNA gyrase AL539_04265 PF01523 Putative modulator of DNA gyrase AL539_04270 PF08543 Phosphomethylpyrimidine kinase AL539_04275 PF00005 ABC transporter AL539_04280 PF00528 Binding-protein-dependent transport system inner membrane component AL539_04285 PF09084 NMT1/THI5 like AL539_04290 PF03070 TENA/THI-4/PQQC family AL539_04295 PF02110 Hydroxyethylthiazole kinase family AL539_04300 PF02581 Thiamine monophosphate synthase AL539_04310 PF00384 Molybdopterin oxidoreductase AL539_04310 PF01568 Molydopterin dinucleotide binding domain AL539_04310 PF18364 Molybdopterin oxidoreductase N-terminal domain AL539_04315 PF03264 NapC/NirT cytochrome c family, N-terminal region AL539_04320 PF13302 Acetyltransferase (GNAT) domain AL539_04340 PF00583 Acetyltransferase (GNAT) family AL539_04360 PF00392 Bacterial regulatory proteins, gntR family AL539_04360 PF00155 Aminotransferase class I and II AL539_04365 PF02595 Glycerate kinase family AL539_04370 PF02447 GntP family permease AL539_04375 PF13556 PucR C-terminal helix-turn-helix domain AL539_04375 PF17853 GGDEF-like domain AL539_04375 PF05651 Putative sugar diacid recognition AL539_04410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_04415 PF12706 Beta-lactamase superfamily domain AL539_04425 PF07690 Major Facilitator Superfamily AL539_04430 PF13533 Biotin-lipoyl like AL539_04435 PF03922 OmpW family AL539_04440 PF13599 Pentapeptide repeats (9 copies) AL539_04460 PF01037 Lrp/AsnC ligand binding domain AL539_04465 PF01810 LysE type translocator AL539_04470 PF08021 Siderophore-interacting FAD-binding domain AL539_04470 PF04954 Siderophore-interacting protein AL539_04475 PF03466 LysR substrate binding domain AL539_04475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_04480 PF00797 N-acetyltransferase AL539_04485 PF00107 Zinc-binding dehydrogenase AL539_04485 PF08240 Alcohol dehydrogenase GroES-like domain AL539_04490 PF00756 Putative esterase AL539_04500 PF17152 Periplasmic sensor domain AL539_04500 PF00990 Diguanylate cyclase, GGDEF domain AL539_04515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_04515 PF03466 LysR substrate binding domain AL539_04530 PF00849 RNA pseudouridylate synthase AL539_04535 PF01554 MatE AL539_04540 PF00990 Diguanylate cyclase, GGDEF domain AL539_04540 PF00563 EAL domain AL539_04550 PF06865 Pyrimidine/purine nucleoside phosphorylase AL539_04565 PF13737 Transposase DDE domain AL539_04575 PF12697 Alpha/beta hydrolase family AL539_04590 PF03600 Citrate transporter AL539_04600 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL539_04610 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL539_04610 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL539_04615 PF02805 Metal binding domain of Ada AL539_04615 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL539_04615 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL539_04615 PF12833 Helix-turn-helix domain AL539_04625 PF07681 DoxX AL539_04630 PF17954 Quercetinase C-terminal cupin domain AL539_04630 PF02678 Pirin AL539_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_04635 PF03466 LysR substrate binding domain AL539_04650 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL539_04660 PF03616 Sodium/glutamate symporter AL539_04665 PF00392 Bacterial regulatory proteins, gntR family AL539_04665 PF00155 Aminotransferase class I and II AL539_04670 PF00005 ABC transporter AL539_04680 PF03616 Sodium/glutamate symporter AL539_04700 PF17200 Single Cache domain 2 AL539_04700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_04700 PF00672 HAMP domain AL539_04705 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL539_04715 PF04397 LytTr DNA-binding domain AL539_04715 PF00072 Response regulator receiver domain AL539_04720 PF13492 GAF domain AL539_04720 PF07694 5TMR of 5TMR-LYT AL539_04720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_04720 PF06580 Histidine kinase AL539_04740 PF00005 ABC transporter AL539_04750 PF01098 Cell cycle protein AL539_04755 PF01709 Transcriptional regulator AL539_04765 PF17149 Periplasmic sensor domain found in signal transduction proteins AL539_04765 PF00512 His Kinase A (phospho-acceptor) domain AL539_04765 PF01627 Hpt domain AL539_04765 PF00672 HAMP domain AL539_04765 PF00072 Response regulator receiver domain AL539_04765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_04775 PF00925 GTP cyclohydrolase II AL539_04775 PF08719 Domain of unknown function (DUF1768) AL539_04785 PF00005 ABC transporter AL539_04785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_04790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_04790 PF00005 ABC transporter AL539_04805 PF18607 ParA helix turn helix domain AL539_04805 PF13614 AAA domain AL539_04810 PF08775 ParB family AL539_04810 PF02195 ParB-like nuclease domain AL539_04815 PF05127 Helicase AL539_04815 PF13718 GNAT acetyltransferase 2 AL539_04825 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_04830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_04830 PF03466 LysR substrate binding domain AL539_04840 PF00267 Gram-negative porin AL539_04845 PF02378 Phosphotransferase system, EIIC AL539_04845 PF00367 phosphotransferase system, EIIB AL539_04850 PF01380 SIS domain AL539_04860 PF01418 Helix-turn-helix domain, rpiR family AL539_04860 PF01380 SIS domain AL539_04865 PF00246 Zinc carboxypeptidase AL539_04870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_04875 PF03358 NADPH-dependent FMN reductase AL539_04890 PF00005 ABC transporter AL539_04890 PF03412 Peptidase C39 family AL539_04890 PF00664 ABC transporter transmembrane region AL539_04905 PF00529 HlyD membrane-fusion protein of T1SS AL539_04910 PF00158 Sigma-54 interaction domain AL539_04910 PF00072 Response regulator receiver domain AL539_04910 PF02954 Bacterial regulatory protein, Fis family AL539_04915 PF00512 His Kinase A (phospho-acceptor) domain AL539_04915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_04915 PF02743 Cache domain AL539_04920 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL539_04920 PF01243 Pyridoxamine 5'-phosphate oxidase AL539_04930 PF12833 Helix-turn-helix domain AL539_04935 PF01619 Proline dehydrogenase AL539_04935 PF14850 DNA-binding domain of Proline dehydrogenase AL539_04935 PF00171 Aldehyde dehydrogenase family AL539_04935 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL539_04945 PF00474 Sodium:solute symporter family AL539_04975 PF01037 Lrp/AsnC ligand binding domain AL539_04985 PF00005 ABC transporter AL539_04985 PF00664 ABC transporter transmembrane region AL539_04995 PF00271 Helicase conserved C-terminal domain AL539_04995 PF00270 DEAD/DEAH box helicase AL539_05000 PF03475 3-alpha domain AL539_05000 PF03473 MOSC domain AL539_05020 PF04542 Sigma-70 region 2 AL539_05020 PF08281 Sigma-70, region 4 AL539_05025 PF12833 Helix-turn-helix domain AL539_05025 PF01965 DJ-1/PfpI family AL539_05035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_05035 PF03466 LysR substrate binding domain AL539_05055 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_05055 PF13192 Thioredoxin domain AL539_05060 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL539_05060 PF00578 AhpC/TSA family AL539_05065 PF01047 MarR family AL539_05070 PF02566 OsmC-like protein AL539_05120 PF00005 ABC transporter AL539_05140 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL539_05140 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL539_05145 PF06276 Ferric iron reductase FhuF-like transporter AL539_05145 PF04183 IucA / IucC family AL539_05155 PF06276 Ferric iron reductase FhuF-like transporter AL539_05155 PF04183 IucA / IucC family AL539_05160 PF02655 ATP-grasp domain AL539_05160 PF00206 Lyase AL539_05165 PF00593 TonB dependent receptor AL539_05165 PF07715 TonB-dependent Receptor Plug Domain AL539_05170 PF00593 TonB dependent receptor AL539_05170 PF07660 Secretin and TonB N terminus short domain AL539_05170 PF07715 TonB-dependent Receptor Plug Domain AL539_05175 PF01497 Periplasmic binding protein AL539_05180 PF01032 FecCD transport family AL539_05185 PF01032 FecCD transport family AL539_05190 PF00005 ABC transporter AL539_05195 PF17200 Single Cache domain 2 AL539_05195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_05195 PF00672 HAMP domain AL539_05200 PF00675 Insulinase (Peptidase family M16) AL539_05200 PF05193 Peptidase M16 inactive domain AL539_05210 PF04225 Opacity-associated protein A LysM-like domain AL539_05210 PF01551 Peptidase family M23 AL539_05225 PF07690 Major Facilitator Superfamily AL539_05230 PF02796 Helix-turn-helix domain of resolvase AL539_05230 PF00239 Resolvase, N terminal domain AL539_05235 PF00356 Bacterial regulatory proteins, lacI family AL539_05240 PF00474 Sodium:solute symporter family AL539_05255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL539_05265 PF03480 Bacterial extracellular solute-binding protein, family 7 AL539_05270 PF00356 Bacterial regulatory proteins, lacI family AL539_05275 PF03328 HpcH/HpaI aldolase/citrate lyase family AL539_05295 PF12697 Alpha/beta hydrolase family AL539_05310 PF07690 Major Facilitator Superfamily AL539_05320 PF03313 Serine dehydratase alpha chain AL539_05320 PF03315 Serine dehydratase beta chain AL539_05325 PF00128 Alpha amylase, catalytic domain AL539_05325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL539_05330 PF02264 LamB porin AL539_05345 PF02903 Alpha amylase, N-terminal ig-like domain AL539_05345 PF16657 Maltogenic Amylase, C-terminal domain AL539_05345 PF00128 Alpha amylase, catalytic domain AL539_05350 PF04231 Endonuclease I AL539_05355 PF11852 Domain of unknown function (DUF3372) AL539_05355 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL539_05355 PF17967 Pullulanase N2 domain AL539_05355 PF03714 Bacterial pullanase-associated domain AL539_05355 PF18494 Pullulanase Ins domain AL539_05370 PF08543 Phosphomethylpyrimidine kinase AL539_05375 PF00375 Sodium:dicarboxylate symporter family AL539_05380 PF03193 RsgA GTPase AL539_05385 PF02378 Phosphotransferase system, EIIC AL539_05385 PF00367 phosphotransferase system, EIIB AL539_05390 PF02630 SCO1/SenC AL539_05405 PF17874 MalT-like TPR region AL539_05405 PF00196 Bacterial regulatory proteins, luxR family AL539_05410 PF00343 Carbohydrate phosphorylase AL539_05415 PF02446 4-alpha-glucanotransferase AL539_05420 PF02806 Alpha amylase, C-terminal all-beta domain AL539_05420 PF00128 Alpha amylase, catalytic domain AL539_05420 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL539_05425 PF00912 Transglycosylase AL539_05430 PF00128 Alpha amylase, catalytic domain AL539_05445 PF07670 Nucleoside recognition AL539_05450 PF07670 Nucleoside recognition AL539_05455 PF01546 Peptidase family M20/M25/M40 AL539_05455 PF07687 Peptidase dimerisation domain AL539_05460 PF06803 Protein of unknown function (DUF1232) AL539_05475 PF00375 Sodium:dicarboxylate symporter family AL539_05485 PF03466 LysR substrate binding domain AL539_05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_05490 PF08803 Putative mono-oxygenase ydhR AL539_05505 PF13737 Transposase DDE domain AL539_05515 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL539_05520 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL539_05520 PF02563 Polysaccharide biosynthesis/export protein AL539_05520 PF10531 SLBB domain AL539_05525 PF00881 Nitroreductase family AL539_05530 PF01914 MarC family integral membrane protein AL539_05535 PF01734 Patatin-like phospholipase AL539_05540 PF18416 N-acetylglucosamine binding protein domain 2 AL539_05540 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL539_05545 PF02469 Fasciclin domain AL539_05550 PF00875 DNA photolyase AL539_05550 PF03441 FAD binding domain of DNA photolyase AL539_05565 PF00561 alpha/beta hydrolase fold AL539_05570 PF00768 D-alanyl-D-alanine carboxypeptidase AL539_05570 PF07943 Penicillin-binding protein 5, C-terminal domain AL539_05575 PF00128 Alpha amylase, catalytic domain AL539_05575 PF00686 Starch binding domain AL539_05580 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL539_05580 PF12833 Helix-turn-helix domain AL539_05585 PF00881 Nitroreductase family AL539_05595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_05595 PF03466 LysR substrate binding domain AL539_05600 PF09905 DNA-binding protein VF530 AL539_05610 PF00970 Oxidoreductase FAD-binding domain AL539_05610 PF00175 Oxidoreductase NAD-binding domain AL539_05620 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL539_05625 PF01594 AI-2E family transporter AL539_05635 PF13533 Biotin-lipoyl like AL539_05660 PF00892 EamA-like transporter family AL539_05665 PF03466 LysR substrate binding domain AL539_05665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_05670 PF07690 Major Facilitator Superfamily AL539_05680 PF00583 Acetyltransferase (GNAT) family AL539_05690 PF00072 Response regulator receiver domain AL539_05690 PF00486 Transcriptional regulatory protein, C terminal AL539_05695 PF00672 HAMP domain AL539_05695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_05695 PF00512 His Kinase A (phospho-acceptor) domain AL539_05710 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL539_05715 PF04055 Radical SAM superfamily AL539_05740 PF08000 Bacterial PH domain AL539_05755 PF00691 OmpA family AL539_05755 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL539_05760 PF01618 MotA/TolQ/ExbB proton channel family AL539_05765 PF04545 Sigma-70, region 4 AL539_05765 PF04542 Sigma-70 region 2 AL539_05770 PF03748 Flagellar basal body-associated protein FliL AL539_05785 PF02561 Flagellar protein FliS AL539_05790 PF02465 Flagellar hook-associated protein 2 N-terminus AL539_05790 PF07196 Flagellin hook IN motif AL539_05790 PF07195 Flagellar hook-associated protein 2 C-terminus AL539_05800 PF00669 Bacterial flagellin N-terminal helical region AL539_05800 PF00700 Bacterial flagellin C-terminal helical region AL539_05810 PF00771 FHIPEP family AL539_05815 PF01312 FlhB HrpN YscU SpaS Family AL539_05820 PF01311 Bacterial export proteins, family 1 AL539_05825 PF01313 Bacterial export proteins, family 3 AL539_05830 PF00813 FliP family AL539_05835 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL539_05850 PF00072 Response regulator receiver domain AL539_05850 PF02954 Bacterial regulatory protein, Fis family AL539_05850 PF00158 Sigma-54 interaction domain AL539_05855 PF02049 Flagellar hook-basal body complex protein FliE AL539_05860 PF08345 Flagellar M-ring protein C-terminal AL539_05860 PF01514 Secretory protein of YscJ/FliF family AL539_05865 PF01706 FliG C-terminal domain AL539_05865 PF14842 FliG N-terminal domain AL539_05865 PF14841 FliG middle domain AL539_05875 PF18269 T3SS EscN ATPase C-terminal domain AL539_05875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_05890 PF03466 LysR substrate binding domain AL539_05890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_05925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_05930 PF03466 LysR substrate binding domain AL539_05930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_05950 PF00486 Transcriptional regulatory protein, C terminal AL539_05950 PF00072 Response regulator receiver domain AL539_05955 PF08448 PAS fold AL539_05955 PF13426 PAS domain AL539_05955 PF00512 His Kinase A (phospho-acceptor) domain AL539_05955 PF00072 Response regulator receiver domain AL539_05955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_05960 PF00080 Copper/zinc superoxide dismutase (SODC) AL539_05975 PF13188 PAS domain AL539_05975 PF00990 Diguanylate cyclase, GGDEF domain AL539_05975 PF03707 Bacterial signalling protein N terminal repeat AL539_05975 PF00563 EAL domain AL539_05980 PF00155 Aminotransferase class I and II AL539_05985 PF08240 Alcohol dehydrogenase GroES-like domain AL539_05985 PF00107 Zinc-binding dehydrogenase AL539_06015 PF00194 Eukaryotic-type carbonic anhydrase AL539_06020 PF00924 Mechanosensitive ion channel AL539_06030 PF01070 FMN-dependent dehydrogenase AL539_06035 PF02652 L-lactate permease AL539_06040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_06040 PF03466 LysR substrate binding domain AL539_06045 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL539_06045 PF00326 Prolyl oligopeptidase family AL539_06050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_06050 PF00005 ABC transporter AL539_06060 PF13654 AAA domain AL539_06060 PF05362 Lon protease (S16) C-terminal proteolytic domain AL539_06065 PF00672 HAMP domain AL539_06065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_06065 PF17200 Single Cache domain 2 AL539_06070 PF13609 Gram-negative porin AL539_06075 PF07238 PilZ domain AL539_06075 PF12945 Flagellar protein YcgR AL539_06090 PF00583 Acetyltransferase (GNAT) family AL539_06095 PF12800 4Fe-4S binding domain AL539_06095 PF12838 4Fe-4S dicluster domain AL539_06100 PF12801 4Fe-4S binding domain AL539_06100 PF13237 4Fe-4S dicluster domain AL539_06120 PF00005 ABC transporter AL539_06120 PF12558 ATP-binding cassette cobalt transporter AL539_06125 PF07155 ECF-type riboflavin transporter, S component AL539_06130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_06130 PF00529 HlyD membrane-fusion protein of T1SS AL539_06135 PF11742 Protein of unknown function (DUF3302) AL539_06140 PF00990 Diguanylate cyclase, GGDEF domain AL539_06155 PF01048 Phosphorylase superfamily AL539_06160 PF08349 Protein of unknown function (DUF1722) AL539_06165 PF13411 MerR HTH family regulatory protein AL539_06170 PF00875 DNA photolyase AL539_06170 PF03441 FAD binding domain of DNA photolyase AL539_06175 PF17969 L,D-transpeptidase C-terminal domain AL539_06175 PF01476 LysM domain AL539_06175 PF03734 L,D-transpeptidase catalytic domain AL539_06185 PF00271 Helicase conserved C-terminal domain AL539_06185 PF00270 DEAD/DEAH box helicase AL539_06190 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL539_06190 PF00326 Prolyl oligopeptidase family AL539_06195 PF07715 TonB-dependent Receptor Plug Domain AL539_06195 PF00593 TonB dependent receptor AL539_06215 PF00672 HAMP domain AL539_06215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_06220 PF12849 PBP superfamily domain AL539_06225 PF00528 Binding-protein-dependent transport system inner membrane component AL539_06230 PF00528 Binding-protein-dependent transport system inner membrane component AL539_06235 PF00005 ABC transporter AL539_06250 PF13519 von Willebrand factor type A domain AL539_06255 PF13519 von Willebrand factor type A domain AL539_06265 PF01882 Protein of unknown function DUF58 AL539_06270 PF17863 AAA lid domain AL539_06270 PF07726 ATPase family associated with various cellular activities (AAA) AL539_06275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_06275 PF00672 HAMP domain AL539_06275 PF02743 Cache domain AL539_06285 PF00196 Bacterial regulatory proteins, luxR family AL539_06290 PF00196 Bacterial regulatory proteins, luxR family AL539_06300 PF00005 ABC transporter AL539_06300 PF00664 ABC transporter transmembrane region AL539_06305 PF00529 HlyD membrane-fusion protein of T1SS AL539_06315 PF01032 FecCD transport family AL539_06320 PF01497 Periplasmic binding protein AL539_06325 PF00005 ABC transporter AL539_06335 PF00005 ABC transporter AL539_06335 PF00664 ABC transporter transmembrane region AL539_06340 PF00512 His Kinase A (phospho-acceptor) domain AL539_06340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_06345 PF00072 Response regulator receiver domain AL539_06345 PF00486 Transcriptional regulatory protein, C terminal AL539_06350 PF02080 TrkA-C domain AL539_06350 PF02254 TrkA-N domain AL539_06355 PF02386 Cation transport protein AL539_06360 PF03466 LysR substrate binding domain AL539_06360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_06365 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_06370 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL539_06370 PF00355 Rieske [2Fe-2S] domain AL539_06380 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_06380 PF18113 Rubredoxin binding C-terminal domain AL539_06385 PF01266 FAD dependent oxidoreductase AL539_06395 PF00127 Copper binding proteins, plastocyanin/azurin family AL539_06400 PF13419 Haloacid dehalogenase-like hydrolase AL539_06410 PF01590 GAF domain AL539_06410 PF00158 Sigma-54 interaction domain AL539_06415 PF00258 Flavodoxin AL539_06415 PF00301 Rubredoxin AL539_06415 PF00753 Metallo-beta-lactamase superfamily AL539_06420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_06420 PF18113 Rubredoxin binding C-terminal domain AL539_06430 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL539_06430 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_06435 PF06628 Catalase-related immune-responsive AL539_06435 PF00199 Catalase AL539_06440 PF13417 Glutathione S-transferase, N-terminal domain AL539_06445 PF00107 Zinc-binding dehydrogenase AL539_06445 PF16884 N-terminal domain of oxidoreductase AL539_06450 PF16925 Tetracyclin repressor-like, C-terminal domain AL539_06450 PF00440 Bacterial regulatory proteins, tetR family AL539_06485 PF00534 Glycosyl transferases group 1 AL539_06485 PF13439 Glycosyltransferase Family 4 AL539_06495 PF02706 Chain length determinant protein AL539_06495 PF13614 AAA domain AL539_06495 PF13807 G-rich domain on putative tyrosine kinase AL539_06510 PF02397 Bacterial sugar transferase AL539_06515 PF08402 TOBE domain AL539_06515 PF00005 ABC transporter AL539_06520 PF01547 Bacterial extracellular solute-binding protein AL539_06525 PF00528 Binding-protein-dependent transport system inner membrane component AL539_06525 PF14785 Maltose transport system permease protein MalF P2 domain AL539_06530 PF00528 Binding-protein-dependent transport system inner membrane component AL539_06555 PF00005 ABC transporter AL539_06555 PF00664 ABC transporter transmembrane region AL539_06560 PF00005 ABC transporter AL539_06560 PF00664 ABC transporter transmembrane region AL539_06565 PF07715 TonB-dependent Receptor Plug Domain AL539_06565 PF00593 TonB dependent receptor AL539_06570 PF01497 Periplasmic binding protein AL539_06575 PF01032 FecCD transport family AL539_06580 PF01032 FecCD transport family AL539_06590 PF05661 Protein of unknown function (DUF808) AL539_06595 PF01979 Amidohydrolase family AL539_06605 PF01679 Proteolipid membrane potential modulator AL539_06610 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_06610 PF03473 MOSC domain AL539_06610 PF03476 MOSC N-terminal beta barrel domain AL539_06610 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_06610 PF03473 MOSC domain AL539_06610 PF03476 MOSC N-terminal beta barrel domain AL539_06615 PF02540 NAD synthase AL539_06620 PF01467 Cytidylyltransferase-like AL539_06660 PF00005 ABC transporter AL539_06665 PF01032 FecCD transport family AL539_06675 PF02472 Biopolymer transport protein ExbD/TolR AL539_06680 PF01618 MotA/TolQ/ExbB proton channel family AL539_06685 PF03544 Gram-negative bacterial TonB protein C-terminal AL539_06690 PF04055 Radical SAM superfamily AL539_06695 PF06228 Haem utilisation ChuX/HutX AL539_06700 PF01243 Pyridoxamine 5'-phosphate oxidase AL539_06710 PF01584 CheW-like domain AL539_06710 PF00072 Response regulator receiver domain AL539_06720 PF01554 MatE AL539_06725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_06725 PF00005 ABC transporter AL539_06730 PF00005 ABC transporter AL539_06730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_06735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_06740 PF00528 Binding-protein-dependent transport system inner membrane component AL539_06745 PF08220 DeoR-like helix-turn-helix domain AL539_06745 PF00455 DeoR C terminal sensor domain AL539_06750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_06750 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL539_06755 PF17042 Nucleotide-binding C-terminal domain AL539_06755 PF07005 Sugar-binding N-terminal domain AL539_06760 PF00596 Class II Aldolase and Adducin N-terminal domain AL539_06765 PF01261 Xylose isomerase-like TIM barrel AL539_06770 PF01370 NAD dependent epimerase/dehydratase family AL539_06775 PF02447 GntP family permease AL539_06780 PF02583 Metal-sensitive transcriptional repressor AL539_06785 PF03824 High-affinity nickel-transport protein AL539_06795 PF00672 HAMP domain AL539_06795 PF02743 Cache domain AL539_06795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_06800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_06800 PF03466 LysR substrate binding domain AL539_06805 PF17848 Acetyl-coA carboxylase zinc finger domain AL539_06805 PF01039 Carboxyl transferase domain AL539_06815 PF08453 Peptidase family M9 N-terminal AL539_06815 PF01752 Collagenase AL539_06815 PF04151 Bacterial pre-peptidase C-terminal domain AL539_06825 PF02627 Carboxymuconolactone decarboxylase family AL539_06830 PF13411 MerR HTH family regulatory protein AL539_06835 PF00128 Alpha amylase, catalytic domain AL539_06850 PF00999 Sodium/hydrogen exchanger family AL539_06850 PF02254 TrkA-N domain AL539_06855 PF02525 Flavodoxin-like fold AL539_06860 PF00582 Universal stress protein family AL539_06865 PF12848 ABC transporter AL539_06865 PF00005 ABC transporter AL539_06865 PF16326 ABC transporter C-terminal domain AL539_06870 PF00326 Prolyl oligopeptidase family AL539_06870 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL539_06880 PF13533 Biotin-lipoyl like AL539_06885 PF00873 AcrB/AcrD/AcrF family AL539_06890 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_06900 PF13302 Acetyltransferase (GNAT) domain AL539_06910 PF00990 Diguanylate cyclase, GGDEF domain AL539_06910 PF17151 Periplasmic sensor domain AL539_06925 PF00873 AcrB/AcrD/AcrF family AL539_06930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_06945 PF12838 4Fe-4S dicluster domain AL539_06945 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_06945 PF01568 Molydopterin dinucleotide binding domain AL539_06945 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL539_06945 PF00384 Molybdopterin oxidoreductase AL539_06960 PF00005 ABC transporter AL539_06970 PF02567 Phenazine biosynthesis-like protein AL539_06975 PF01161 Phosphatidylethanolamine-binding protein AL539_06985 PF01758 Sodium Bile acid symporter family AL539_07000 PF01638 HxlR-like helix-turn-helix AL539_07010 PF13737 Transposase DDE domain AL539_07025 PF03466 LysR substrate binding domain AL539_07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_07030 PF00248 Aldo/keto reductase family AL539_07035 PF03928 Haem-degrading AL539_07055 PF03222 Tryptophan/tyrosine permease family AL539_07065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_07065 PF00672 HAMP domain AL539_07065 PF02743 Cache domain AL539_07095 PF01551 Peptidase family M23 AL539_07095 PF08525 Opacity-associated protein A N-terminal motif AL539_07095 PF01476 LysM domain AL539_07100 PF08448 PAS fold AL539_07100 PF00990 Diguanylate cyclase, GGDEF domain AL539_07100 PF00563 EAL domain AL539_07100 PF08447 PAS fold AL539_07105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_07105 PF03466 LysR substrate binding domain AL539_07110 PF07690 Major Facilitator Superfamily AL539_07125 PF00462 Glutaredoxin AL539_07130 PF00892 EamA-like transporter family AL539_07145 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL539_07165 PF01810 LysE type translocator AL539_07175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL539_07175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL539_07175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL539_07175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL539_07180 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL539_07180 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL539_07185 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL539_07190 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL539_07195 PF00510 Cytochrome c oxidase subunit III AL539_07215 PF02628 Cytochrome oxidase assembly protein AL539_07220 PF01040 UbiA prenyltransferase family AL539_07225 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL539_07225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_07235 PF00691 OmpA family AL539_07235 PF05736 OprF membrane domain AL539_07255 PF00313 'Cold-shock' DNA-binding domain AL539_07260 PF03889 Alternative ribosome-rescue factor A AL539_07265 PF00990 Diguanylate cyclase, GGDEF domain AL539_07270 PF04539 Sigma-70 region 3 AL539_07270 PF04545 Sigma-70, region 4 AL539_07270 PF00140 Sigma-70 factor, region 1.2 AL539_07270 PF04542 Sigma-70 region 2 AL539_07280 PF00005 ABC transporter AL539_07280 PF00664 ABC transporter transmembrane region AL539_07285 PF00664 ABC transporter transmembrane region AL539_07285 PF00005 ABC transporter AL539_07290 PF02321 Outer membrane efflux protein AL539_07295 PF00072 Response regulator receiver domain AL539_07295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_07300 PF13533 Biotin-lipoyl like AL539_07320 PF00672 HAMP domain AL539_07320 PF12729 Four helix bundle sensory module for signal transduction AL539_07320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_07325 PF00210 Ferritin-like domain AL539_07335 PF07995 Glucose / Sorbosone dehydrogenase AL539_07340 PF00465 Iron-containing alcohol dehydrogenase AL539_07350 PF00892 EamA-like transporter family AL539_07360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_07360 PF03466 LysR substrate binding domain AL539_07370 PF13193 AMP-binding enzyme C-terminal domain AL539_07370 PF00501 AMP-binding enzyme AL539_07375 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL539_07380 PF01329 Pterin 4 alpha carbinolamine dehydratase AL539_07400 PF12843 Putative quorum-sensing-regulated virulence factor AL539_07440 PF18766 SWI2/SNF2 ATPase AL539_07440 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_07440 PF11867 Domain of unknown function (DUF3387) AL539_07455 PF01420 Type I restriction modification DNA specificity domain AL539_07460 PF02384 N-6 DNA Methylase AL539_07465 PF00589 Phage integrase family AL539_07465 PF02899 Phage integrase, N-terminal SAM-like domain AL539_07580 PF09905 DNA-binding protein VF530 AL539_07590 PF00291 Pyridoxal-phosphate dependent enzyme AL539_07600 PF00313 'Cold-shock' DNA-binding domain AL539_07610 PF01470 Pyroglutamyl peptidase AL539_07620 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL539_07620 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL539_07625 PF00270 DEAD/DEAH box helicase AL539_07625 PF00271 Helicase conserved C-terminal domain AL539_07645 PF12792 CSS motif domain associated with EAL AL539_07645 PF00563 EAL domain AL539_07650 PF00005 ABC transporter AL539_07655 PF12729 Four helix bundle sensory module for signal transduction AL539_07655 PF00672 HAMP domain AL539_07655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_07670 PF12849 PBP superfamily domain AL539_07680 PF12833 Helix-turn-helix domain AL539_07685 PF00773 RNB domain AL539_07685 PF08206 Ribonuclease B OB domain AL539_07685 PF00575 S1 RNA binding domain AL539_07690 PF00271 Helicase conserved C-terminal domain AL539_07690 PF00270 DEAD/DEAH box helicase AL539_07690 PF03880 DbpA RNA binding domain AL539_07705 PF00871 Acetokinase family AL539_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_07710 PF03466 LysR substrate binding domain AL539_07715 PF12146 Serine aminopeptidase, S33 AL539_07720 PF12146 Serine aminopeptidase, S33 AL539_07735 PF01925 Sulfite exporter TauE/SafE AL539_07750 PF01475 Ferric uptake regulator family AL539_07755 PF01979 Amidohydrolase family AL539_07760 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_07765 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL539_07765 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL539_07770 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL539_07775 PF01476 LysM domain AL539_07775 PF08525 Opacity-associated protein A N-terminal motif AL539_07775 PF01551 Peptidase family M23 AL539_07785 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL539_07785 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL539_07790 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL539_07790 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL539_07795 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL539_07805 PF01914 MarC family integral membrane protein AL539_07820 PF13426 PAS domain AL539_07820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_07820 PF08447 PAS fold AL539_07830 PF00682 HMGL-like AL539_07835 PF00378 Enoyl-CoA hydratase/isomerase AL539_07840 PF01039 Carboxyl transferase domain AL539_07845 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_07845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_07845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_07850 PF09278 MerR, DNA binding AL539_07850 PF00376 MerR family regulatory protein AL539_07855 PF02803 Thiolase, C-terminal domain AL539_07855 PF00108 Thiolase, N-terminal domain AL539_07860 PF00171 Aldehyde dehydrogenase family AL539_07870 PF00378 Enoyl-CoA hydratase/isomerase AL539_07875 PF00378 Enoyl-CoA hydratase/isomerase AL539_07880 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL539_07880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_07890 PF06481 COX Aromatic Rich Motif AL539_07890 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL539_07895 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL539_07900 PF00510 Cytochrome c oxidase subunit III AL539_07910 PF01040 UbiA prenyltransferase family AL539_07915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_07915 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_07930 PF00171 Aldehyde dehydrogenase family AL539_07940 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_07970 PF00005 ABC transporter AL539_07975 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_07980 PF00528 Binding-protein-dependent transport system inner membrane component AL539_07985 PF00528 Binding-protein-dependent transport system inner membrane component AL539_07995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_07995 PF03466 LysR substrate binding domain AL539_08000 PF13417 Glutathione S-transferase, N-terminal domain AL539_08000 PF00043 Glutathione S-transferase, C-terminal domain AL539_08010 PF03466 LysR substrate binding domain AL539_08010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_08020 PF01012 Electron transfer flavoprotein domain AL539_08020 PF00766 Electron transfer flavoprotein FAD-binding domain AL539_08025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL539_08025 PF00364 Biotin-requiring enzyme AL539_08025 PF02817 e3 binding domain AL539_08030 PF02780 Transketolase, C-terminal domain AL539_08030 PF02779 Transketolase, pyrimidine binding domain AL539_08035 PF00676 Dehydrogenase E1 component AL539_08050 PF00012 Hsp70 protein AL539_08055 PF04314 Copper chaperone PCu(A)C AL539_08090 PF00072 Response regulator receiver domain AL539_08090 PF00486 Transcriptional regulatory protein, C terminal AL539_08110 PF00082 Subtilase family AL539_08110 PF01483 Proprotein convertase P-domain AL539_08120 PF00990 Diguanylate cyclase, GGDEF domain AL539_08120 PF07694 5TMR of 5TMR-LYT AL539_08130 PF03222 Tryptophan/tyrosine permease family AL539_08140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_08140 PF00384 Molybdopterin oxidoreductase AL539_08140 PF01568 Molydopterin dinucleotide binding domain AL539_08145 PF10414 Sirohaem synthase dimerisation region AL539_08145 PF14824 Sirohaem biosynthesis protein central AL539_08145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_08150 PF02885 Glycosyl transferase family, helical bundle domain AL539_08150 PF00591 Glycosyl transferase family, a/b domain AL539_08155 PF01738 Dienelactone hydrolase family AL539_08160 PF03861 ANTAR domain AL539_08160 PF00072 Response regulator receiver domain AL539_08170 PF00005 ABC transporter AL539_08185 PF00528 Binding-protein-dependent transport system inner membrane component AL539_08190 PF00005 ABC transporter AL539_08195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL539_08195 PF04324 BFD-like [2Fe-2S] binding domain AL539_08195 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL539_08195 PF13806 Rieske-like [2Fe-2S] domain AL539_08195 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_08195 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL539_08225 PF00211 Adenylate and Guanylate cyclase catalytic domain AL539_08225 PF00072 Response regulator receiver domain AL539_08245 PF03793 PASTA domain AL539_08245 PF00069 Protein kinase domain AL539_08270 PF12477 Sex factor F TraW protein N terminal AL539_08275 PF10502 Signal peptidase, peptidase S26 AL539_08290 PF13340 Putative transposase of IS4/5 family (DUF4096) AL539_08300 PF10411 Disulfide bond isomerase protein N-terminus AL539_08300 PF13098 Thioredoxin-like domain AL539_08385 PF01751 Toprim domain AL539_08385 PF01131 DNA topoisomerase AL539_08395 PF13737 Transposase DDE domain AL539_08465 PF02652 L-lactate permease AL539_08470 PF02754 Cysteine-rich domain AL539_08475 PF11870 Domain of unknown function (DUF3390) AL539_08475 PF13183 4Fe-4S dicluster domain AL539_08475 PF02589 LUD domain AL539_08480 PF02589 LUD domain AL539_08485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_08485 PF03466 LysR substrate binding domain AL539_08550 PF06613 KorB C-terminal beta-barrel domain AL539_08550 PF08535 KorB domain AL539_08550 PF02195 ParB-like nuclease domain AL539_08555 PF13614 AAA domain AL539_08565 PF11867 Domain of unknown function (DUF3387) AL539_08565 PF18766 SWI2/SNF2 ATPase AL539_08565 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_08580 PF02384 N-6 DNA Methylase AL539_08580 PF12161 HsdM N-terminal domain AL539_08595 PF02899 Phage integrase, N-terminal SAM-like domain AL539_08595 PF00589 Phage integrase family AL539_08680 PF03527 RHS protein AL539_08680 PF05593 RHS Repeat AL539_08690 PF03527 RHS protein AL539_08690 PF05593 RHS Repeat AL539_08750 PF00565 Staphylococcal nuclease homologue AL539_08770 PF01343 Peptidase family S49 AL539_08855 PF13693 Winged helix-turn-helix DNA-binding AL539_08870 PF06122 Conjugative relaxosome accessory transposon protein AL539_08920 PF01695 IstB-like ATP binding protein AL539_08925 PF03050 Transposase IS66 family AL539_08925 PF13005 zinc-finger binding domain of transposase IS66 AL539_08925 PF13007 Transposase C of IS166 homeodomain AL539_08925 PF13817 IS66 C-terminal element AL539_08975 PF09370 Phosphoenolpyruvate hydrolase-like AL539_08990 PF00717 Peptidase S24-like AL539_08995 PF02899 Phage integrase, N-terminal SAM-like domain AL539_08995 PF00589 Phage integrase family AL539_09010 PF02384 N-6 DNA Methylase AL539_09010 PF12161 HsdM N-terminal domain AL539_09015 PF01420 Type I restriction modification DNA specificity domain AL539_09025 PF01926 50S ribosome-binding GTPase AL539_09035 PF18766 SWI2/SNF2 ATPase AL539_09035 PF11867 Domain of unknown function (DUF3387) AL539_09035 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_09060 PF00436 Single-strand binding protein family AL539_09075 PF07728 AAA domain (dynein-related subfamily) AL539_09075 PF08406 CbbQ/NirQ/NorQ C-terminal AL539_09095 PF00092 von Willebrand factor type A domain AL539_09100 PF04002 RadC-like JAB domain AL539_09120 PF00483 Nucleotidyl transferase AL539_09130 PF03350 Uncharacterized protein family, UPF0114 AL539_09135 PF01548 Transposase AL539_09135 PF02371 Transposase IS116/IS110/IS902 family AL539_09140 PF00239 Resolvase, N terminal domain AL539_09140 PF02796 Helix-turn-helix domain of resolvase AL539_09150 PF01381 Helix-turn-helix AL539_09195 PF00589 Phage integrase family AL539_09195 PF02899 Phage integrase, N-terminal SAM-like domain AL539_09335 PF01206 Sulfurtransferase TusA AL539_09370 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_09430 PF07728 AAA domain (dynein-related subfamily) AL539_09430 PF08406 CbbQ/NirQ/NorQ C-terminal AL539_09460 PF01609 Transposase DDE domain AL539_09460 PF13808 DDE_Tnp_1-associated AL539_09485 PF06610 L-alanine exporter AL539_09495 PF02322 Cytochrome bd terminal oxidase subunit II AL539_09500 PF01654 Cytochrome bd terminal oxidase subunit I AL539_09515 PF00672 HAMP domain AL539_09515 PF17200 Single Cache domain 2 AL539_09515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_09520 PF00529 HlyD membrane-fusion protein of T1SS AL539_09520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_09525 PF00873 AcrB/AcrD/AcrF family AL539_09540 PF00579 tRNA synthetases class I (W and Y) AL539_09550 PF03372 Endonuclease/Exonuclease/phosphatase family AL539_09560 PF00672 HAMP domain AL539_09560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_09570 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL539_09595 PF18818 Metallopeptidase superfamily domain AL539_09595 PF08401 Domain of unknown function (DUF1738) AL539_09595 PF13362 Toprim domain AL539_09660 PF02954 Bacterial regulatory protein, Fis family AL539_09675 PF08774 VRR-NUC domain AL539_09675 PF04851 Type III restriction enzyme, res subunit AL539_09680 PF01555 DNA methylase AL539_09680 PF18273 Type III R-M EcoP15I C-terminal domain AL539_09705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_09705 PF03466 LysR substrate binding domain AL539_09715 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL539_09715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL539_09720 PF01037 Lrp/AsnC ligand binding domain AL539_09725 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL539_09725 PF01580 FtsK/SpoIIIE family AL539_09725 PF17854 FtsK alpha domain AL539_09725 PF09397 Ftsk gamma domain AL539_09730 PF03548 Outer membrane lipoprotein carrier protein LolA AL539_09735 PF12002 MgsA AAA+ ATPase C terminal AL539_09735 PF16193 AAA C-terminal domain AL539_09735 PF00004 ATPase family associated with various cellular activities (AAA) AL539_09740 PF02403 Seryl-tRNA synthetase N-terminal domain AL539_09740 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL539_09755 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL539_09765 PF04055 Radical SAM superfamily AL539_09765 PF06968 Biotin and Thiamin Synthesis associated domain AL539_09770 PF00155 Aminotransferase class I and II AL539_09775 PF08241 Methyltransferase domain AL539_09790 PF01435 Peptidase family M48 AL539_09800 PF00106 short chain dehydrogenase AL539_09825 PF16036 Chalcone isomerase-like AL539_09835 PF00206 Lyase AL539_09835 PF08328 Adenylosuccinate lyase C-terminal AL539_09840 PF04356 Protein of unknown function (DUF489) AL539_09855 PF00294 pfkB family carbohydrate kinase AL539_09860 PF00816 H-NS histone family AL539_09865 PF03553 Na+/H+ antiporter family AL539_09870 PF08029 HisG, C-terminal domain AL539_09870 PF01634 ATP phosphoribosyltransferase AL539_09875 PF00815 Histidinol dehydrogenase AL539_09880 PF00155 Aminotransferase class I and II AL539_09885 PF08645 Polynucleotide kinase 3 phosphatase AL539_09885 PF00475 Imidazoleglycerol-phosphate dehydratase AL539_09890 PF00117 Glutamine amidotransferase class-I AL539_09895 PF00977 Histidine biosynthesis protein AL539_09900 PF00977 Histidine biosynthesis protein AL539_09905 PF01502 Phosphoribosyl-AMP cyclohydrolase AL539_09905 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL539_09910 PF02810 SEC-C motif AL539_09915 PF00563 EAL domain AL539_09915 PF08668 HDOD domain AL539_09920 PF00149 Calcineurin-like phosphoesterase AL539_09925 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL539_09930 PF01406 tRNA synthetases class I (C) catalytic domain AL539_09930 PF09190 DALR domain AL539_09935 PF00265 Thymidine kinase AL539_09965 PF01226 Formate/nitrite transporter AL539_09975 PF03649 Uncharacterised protein family (UPF0014) AL539_09980 PF06796 Periplasmic nitrate reductase protein NapE AL539_09985 PF03264 NapC/NirT cytochrome c family, N-terminal region AL539_09990 PF01568 Molydopterin dinucleotide binding domain AL539_09990 PF18364 Molybdopterin oxidoreductase N-terminal domain AL539_09990 PF00384 Molybdopterin oxidoreductase AL539_09995 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL539_09995 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL539_10005 PF01368 DHH family AL539_10005 PF02833 DHHA2 domain AL539_10015 PF00005 ABC transporter AL539_10020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_10020 PF00005 ABC transporter AL539_10025 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_10025 PF00528 Binding-protein-dependent transport system inner membrane component AL539_10030 PF00528 Binding-protein-dependent transport system inner membrane component AL539_10035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_10040 PF00158 Sigma-54 interaction domain AL539_10040 PF02954 Bacterial regulatory protein, Fis family AL539_10045 PF04012 PspA/IM30 family AL539_10050 PF06667 Phage shock protein B AL539_10055 PF04024 PspC domain AL539_10065 PF13533 Biotin-lipoyl like AL539_10070 PF00873 AcrB/AcrD/AcrF family AL539_10075 PF03352 Methyladenine glycosylase AL539_10080 PF03280 Proteobacterial lipase chaperone protein AL539_10085 PF00561 alpha/beta hydrolase fold AL539_10090 PF01053 Cys/Met metabolism PLP-dependent enzyme AL539_10095 PF13091 PLD-like domain AL539_10095 PF13396 Phospholipase_D-nuclease N-terminal AL539_10100 PF00209 Sodium:neurotransmitter symporter family AL539_10105 PF00849 RNA pseudouridylate synthase AL539_10115 PF00175 Oxidoreductase NAD-binding domain AL539_10115 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_10115 PF00970 Oxidoreductase FAD-binding domain AL539_10120 PF03063 Prismane/CO dehydrogenase family AL539_10125 PF01590 GAF domain AL539_10125 PF00158 Sigma-54 interaction domain AL539_10140 PF01066 CDP-alcohol phosphatidyltransferase AL539_10145 PF00005 ABC transporter AL539_10150 PF00528 Binding-protein-dependent transport system inner membrane component AL539_10155 PF13416 Bacterial extracellular solute-binding protein AL539_10165 PF06945 Protein of unknown function (DUF1289) AL539_10180 PF00149 Calcineurin-like phosphoesterase AL539_10180 PF02872 5'-nucleotidase, C-terminal domain AL539_10190 PF01386 Ribosomal L25p family AL539_10195 PF00512 His Kinase A (phospho-acceptor) domain AL539_10195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_10195 PF00672 HAMP domain AL539_10200 PF00072 Response regulator receiver domain AL539_10200 PF00486 Transcriptional regulatory protein, C terminal AL539_10210 PF04851 Type III restriction enzyme, res subunit AL539_10210 PF00271 Helicase conserved C-terminal domain AL539_10215 PF00849 RNA pseudouridylate synthase AL539_10215 PF01479 S4 domain AL539_10225 PF07690 Major Facilitator Superfamily AL539_10235 PF13460 NAD(P)H-binding AL539_10235 PF11066 Protein of unknown function (DUF2867) AL539_10240 PF01554 MatE AL539_10245 PF00005 ABC transporter AL539_10260 PF06965 Na+/H+ antiporter 1 AL539_10265 PF00440 Bacterial regulatory proteins, tetR family AL539_10265 PF16295 Tetracyclin repressor-like, C-terminal domain AL539_10270 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_10270 PF09317 Domain of unknown function (DUF1974) AL539_10270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_10270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_10275 PF07055 Enoyl reductase FAD binding domain AL539_10275 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL539_10275 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL539_10280 PF02080 TrkA-C domain AL539_10280 PF06826 Predicted Permease Membrane Region AL539_10285 PF00462 Glutaredoxin AL539_10290 PF00465 Iron-containing alcohol dehydrogenase AL539_10295 PF01380 SIS domain AL539_10295 PF01418 Helix-turn-helix domain, rpiR family AL539_10300 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL539_10310 PF03956 Lysine exporter LysO AL539_10330 PF04994 TfoX C-terminal domain AL539_10330 PF04993 TfoX N-terminal domain AL539_10345 PF00512 His Kinase A (phospho-acceptor) domain AL539_10345 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_10345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_10355 PF00266 Aminotransferase class-V AL539_10360 PF00291 Pyridoxal-phosphate dependent enzyme AL539_10365 PF00005 ABC transporter AL539_10365 PF00664 ABC transporter transmembrane region AL539_10370 PF00664 ABC transporter transmembrane region AL539_10370 PF00005 ABC transporter AL539_10375 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_10385 PF00266 Aminotransferase class-V AL539_10395 PF00072 Response regulator receiver domain AL539_10395 PF00990 Diguanylate cyclase, GGDEF domain AL539_10400 PF00939 Sodium:sulfate symporter transmembrane region AL539_10405 PF02698 DUF218 domain AL539_10410 PF00390 Malic enzyme, N-terminal domain AL539_10410 PF03949 Malic enzyme, NAD binding domain AL539_10415 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL539_10415 PF11898 Domain of unknown function (DUF3418) AL539_10415 PF00271 Helicase conserved C-terminal domain AL539_10415 PF04408 Helicase associated domain (HA2) AL539_10415 PF00270 DEAD/DEAH box helicase AL539_10425 PF16655 PhoD-like phosphatase, N-terminal domain AL539_10425 PF09423 PhoD-like phosphatase AL539_10430 PF01259 SAICAR synthetase AL539_10450 PF00691 OmpA family AL539_10450 PF05736 OprF membrane domain AL539_10465 PF13183 4Fe-4S dicluster domain AL539_10465 PF02913 FAD linked oxidases, C-terminal domain AL539_10465 PF01565 FAD binding domain AL539_10470 PF04191 Phospholipid methyltransferase AL539_10480 PF00221 Aromatic amino acid lyase AL539_10485 PF01175 Urocanase Rossmann-like domain AL539_10485 PF17392 Urocanase C-terminal domain AL539_10485 PF17391 Urocanase N-terminal domain AL539_10490 PF00491 Arginase family AL539_10495 PF01979 Amidohydrolase family AL539_10500 PF07702 UTRA domain AL539_10500 PF00392 Bacterial regulatory proteins, gntR family AL539_10515 PF02824 TGS domain AL539_10515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL539_10515 PF03129 Anticodon binding domain AL539_10515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL539_10520 PF05198 Translation initiation factor IF-3, N-terminal domain AL539_10520 PF00707 Translation initiation factor IF-3, C-terminal domain AL539_10525 PF01632 Ribosomal protein L35 AL539_10530 PF00453 Ribosomal protein L20 AL539_10535 PF01906 Putative heavy-metal-binding AL539_10570 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL539_10570 PF01409 tRNA synthetases class II core domain (F) AL539_10575 PF01588 Putative tRNA binding domain AL539_10575 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL539_10575 PF03483 B3/4 domain AL539_10575 PF03484 tRNA synthetase B5 domain AL539_10575 PF03147 Ferredoxin-fold anticodon binding domain AL539_10585 PF00216 Bacterial DNA-binding protein AL539_10595 PF05724 Thiopurine S-methyltransferase (TPMT) AL539_10600 PF02222 ATP-grasp domain AL539_10605 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_10605 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_10610 PF04172 LrgB-like family AL539_10615 PF03788 LrgA family AL539_10620 PF00929 Exonuclease AL539_10620 PF08411 Exonuclease C-terminal AL539_10630 PF13460 NAD(P)H-binding AL539_10635 PF02277 Phosphoribosyltransferase AL539_10640 PF02654 Cobalamin-5-phosphate synthase AL539_10645 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL539_10660 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL539_10665 PF01032 FecCD transport family AL539_10670 PF00005 ABC transporter AL539_10690 PF03466 LysR substrate binding domain AL539_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_10700 PF01863 Protein of unknown function DUF45 AL539_10705 PF05971 RNA methyltransferase AL539_10725 PF00392 Bacterial regulatory proteins, gntR family AL539_10730 PF00171 Aldehyde dehydrogenase family AL539_10735 PF05544 Proline racemase AL539_10740 PF01266 FAD dependent oxidoreductase AL539_10740 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL539_10750 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL539_10755 PF00701 Dihydrodipicolinate synthetase family AL539_10760 PF00005 ABC transporter AL539_10760 PF08402 TOBE domain AL539_10765 PF00528 Binding-protein-dependent transport system inner membrane component AL539_10770 PF00528 Binding-protein-dependent transport system inner membrane component AL539_10780 PF01752 Collagenase AL539_10780 PF08453 Peptidase family M9 N-terminal AL539_10790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_10790 PF00005 ABC transporter AL539_10795 PF00005 ABC transporter AL539_10795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_10800 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_10800 PF00528 Binding-protein-dependent transport system inner membrane component AL539_10805 PF00528 Binding-protein-dependent transport system inner membrane component AL539_10810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_10815 PF01546 Peptidase family M20/M25/M40 AL539_10815 PF07687 Peptidase dimerisation domain AL539_10820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_10825 PF04209 homogentisate 1,2-dioxygenase AL539_10835 PF14497 Glutathione S-transferase, C-terminal domain AL539_10835 PF02798 Glutathione S-transferase, N-terminal domain AL539_11000 PF03553 Na+/H+ antiporter family AL539_11005 PF00120 Glutamine synthetase, catalytic domain AL539_11015 PF07722 Peptidase C26 AL539_11020 PF01381 Helix-turn-helix AL539_11020 PF07883 Cupin domain AL539_11025 PF00171 Aldehyde dehydrogenase family AL539_11030 PF01266 FAD dependent oxidoreductase AL539_11035 PF00795 Carbon-nitrogen hydrolase AL539_11040 PF04371 Porphyromonas-type peptidyl-arginine deiminase AL539_11045 PF00171 Aldehyde dehydrogenase family AL539_11050 PF00202 Aminotransferase class-III AL539_11055 PF00563 EAL domain AL539_11055 PF12792 CSS motif domain associated with EAL AL539_11065 PF01047 MarR family AL539_11070 PF04237 YjbR AL539_11095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL539_11095 PF01627 Hpt domain AL539_11095 PF00672 HAMP domain AL539_11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_11095 PF00072 Response regulator receiver domain AL539_11095 PF00512 His Kinase A (phospho-acceptor) domain AL539_11100 PF03707 Bacterial signalling protein N terminal repeat AL539_11100 PF00990 Diguanylate cyclase, GGDEF domain AL539_11100 PF00563 EAL domain AL539_11115 PF04204 Homoserine O-succinyltransferase AL539_11125 PF00893 Small Multidrug Resistance protein AL539_11130 PF03279 Bacterial lipid A biosynthesis acyltransferase AL539_11135 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL539_11140 PF01810 LysE type translocator AL539_11150 PF01235 Sodium:alanine symporter family AL539_11175 PF00884 Sulfatase AL539_11180 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL539_11185 PF00528 Binding-protein-dependent transport system inner membrane component AL539_11190 PF00571 CBS domain AL539_11190 PF00005 ABC transporter AL539_11205 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_11210 PF00583 Acetyltransferase (GNAT) family AL539_11215 PF00202 Aminotransferase class-III AL539_11220 PF06339 Ectoine synthase AL539_11225 PF00696 Amino acid kinase family AL539_11225 PF13840 ACT domain AL539_11230 PF00884 Sulfatase AL539_11240 PF03781 Sulfatase-modifying factor enzyme 1 AL539_11245 PF04055 Radical SAM superfamily AL539_11245 PF13186 Iron-sulfur cluster-binding domain AL539_11260 PF00884 Sulfatase AL539_11265 PF00884 Sulfatase AL539_11285 PF02321 Outer membrane efflux protein AL539_11300 PF00455 DeoR C terminal sensor domain AL539_11300 PF08220 DeoR-like helix-turn-helix domain AL539_11305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL539_11305 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL539_11310 PF03928 Haem-degrading AL539_11315 PF00990 Diguanylate cyclase, GGDEF domain AL539_11315 PF00072 Response regulator receiver domain AL539_11335 PF00939 Sodium:sulfate symporter transmembrane region AL539_11340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_11340 PF00512 His Kinase A (phospho-acceptor) domain AL539_11345 PF00158 Sigma-54 interaction domain AL539_11345 PF02954 Bacterial regulatory protein, Fis family AL539_11345 PF00072 Response regulator receiver domain AL539_11350 PF00563 EAL domain AL539_11350 PF00990 Diguanylate cyclase, GGDEF domain AL539_11350 PF03707 Bacterial signalling protein N terminal repeat AL539_11355 PF01966 HD domain AL539_11355 PF11871 Domain of unknown function (DUF3391) AL539_11360 PF01810 LysE type translocator AL539_11365 PF11230 Protein of unknown function (DUF3029) AL539_11370 PF04055 Radical SAM superfamily AL539_11380 PF03741 Integral membrane protein TerC family AL539_11390 PF01966 HD domain AL539_11395 PF00465 Iron-containing alcohol dehydrogenase AL539_11400 PF03222 Tryptophan/tyrosine permease family AL539_11405 PF00072 Response regulator receiver domain AL539_11405 PF01966 HD domain AL539_11415 PF00005 ABC transporter AL539_11420 PF01497 Periplasmic binding protein AL539_11425 PF01032 FecCD transport family AL539_11430 PF07715 TonB-dependent Receptor Plug Domain AL539_11430 PF00593 TonB dependent receptor AL539_11440 PF00005 ABC transporter AL539_11440 PF00664 ABC transporter transmembrane region AL539_11445 PF00664 ABC transporter transmembrane region AL539_11445 PF00005 ABC transporter AL539_11450 PF07963 Prokaryotic N-terminal methylation motif AL539_11450 PF08334 Type II secretion system (T2SS), protein G AL539_11460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_11460 PF03466 LysR substrate binding domain AL539_11470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL539_11470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL539_11485 PF00012 Hsp70 protein AL539_11490 PF00012 Hsp70 protein AL539_11500 PF00990 Diguanylate cyclase, GGDEF domain AL539_11535 PF02525 Flavodoxin-like fold AL539_11540 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL539_11540 PF00271 Helicase conserved C-terminal domain AL539_11540 PF04408 Helicase associated domain (HA2) AL539_11540 PF11898 Domain of unknown function (DUF3418) AL539_11540 PF00270 DEAD/DEAH box helicase AL539_11555 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_11565 PF02397 Bacterial sugar transferase AL539_11575 PF00534 Glycosyl transferases group 1 AL539_11575 PF13439 Glycosyltransferase Family 4 AL539_11605 PF13439 Glycosyltransferase Family 4 AL539_11605 PF00534 Glycosyl transferases group 1 AL539_11610 PF13439 Glycosyltransferase Family 4 AL539_11610 PF00534 Glycosyl transferases group 1 AL539_11615 PF00158 Sigma-54 interaction domain AL539_11615 PF00072 Response regulator receiver domain AL539_11615 PF02954 Bacterial regulatory protein, Fis family AL539_11630 PF02563 Polysaccharide biosynthesis/export protein AL539_11630 PF10531 SLBB domain AL539_11640 PF01740 STAS domain AL539_11645 PF01068 ATP dependent DNA ligase domain AL539_11645 PF14743 DNA ligase OB-like domain AL539_11655 PF01554 MatE AL539_11660 PF00677 Lumazine binding domain AL539_11675 PF01339 CheB methylesterase AL539_11675 PF00072 Response regulator receiver domain AL539_11680 PF05230 MASE2 domain AL539_11680 PF00990 Diguanylate cyclase, GGDEF domain AL539_11690 PF00877 NlpC/P60 family AL539_11730 PF00480 ROK family AL539_11740 PF03453 MoeA N-terminal region (domain I and II) AL539_11740 PF03454 MoeA C-terminal region (domain IV) AL539_11740 PF00994 Probable molybdopterin binding domain AL539_11745 PF12804 MobA-like NTP transferase domain AL539_11750 PF00005 ABC transporter AL539_11750 PF08402 TOBE domain AL539_11755 PF00528 Binding-protein-dependent transport system inner membrane component AL539_11760 PF12849 PBP superfamily domain AL539_11765 PF02954 Bacterial regulatory protein, Fis family AL539_11765 PF00072 Response regulator receiver domain AL539_11765 PF00158 Sigma-54 interaction domain AL539_11770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_11770 PF00512 His Kinase A (phospho-acceptor) domain AL539_11780 PF00005 ABC transporter AL539_11780 PF12848 ABC transporter AL539_11785 PF02634 FdhD/NarQ family AL539_11805 PF02613 Nitrate reductase delta subunit AL539_11815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_11815 PF01568 Molydopterin dinucleotide binding domain AL539_11815 PF00384 Molybdopterin oxidoreductase AL539_11820 PF13247 4Fe-4S dicluster domain AL539_11955 PF00909 Ammonium Transporter Family AL539_11960 PF02146 Sir2 family AL539_11965 PF13416 Bacterial extracellular solute-binding protein AL539_11970 PF13416 Bacterial extracellular solute-binding protein AL539_11975 PF00528 Binding-protein-dependent transport system inner membrane component AL539_11980 PF00528 Binding-protein-dependent transport system inner membrane component AL539_11985 PF00005 ABC transporter AL539_11985 PF08402 TOBE domain AL539_12005 PF01171 PP-loop family AL539_12010 PF00582 Universal stress protein family AL539_12015 PF13545 Crp-like helix-turn-helix domain AL539_12015 PF00027 Cyclic nucleotide-binding domain AL539_12030 PF00403 Heavy-metal-associated domain AL539_12040 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL539_12040 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL539_12055 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL539_12070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_12070 PF09308 LuxQ, periplasmic AL539_12070 PF00512 His Kinase A (phospho-acceptor) domain AL539_12070 PF00072 Response regulator receiver domain AL539_12100 PF17414 MatP C-terminal ribbon-helix-helix domain AL539_12100 PF06303 MatP N-terminal domain AL539_12105 PF05362 Lon protease (S16) C-terminal proteolytic domain AL539_12105 PF13654 AAA domain AL539_12110 PF07977 FabA-like domain AL539_12115 PF04957 Ribosome modulation factor AL539_12135 PF01170 Putative RNA methylase family UPF0020 AL539_12135 PF02926 THUMP domain AL539_12135 PF10672 S-adenosylmethionine-dependent methyltransferase AL539_12140 PF07126 Cell-division protein ZapC AL539_12145 PF01180 Dihydroorotate dehydrogenase AL539_12150 PF05088 Bacterial NAD-glutamate dehydrogenase AL539_12160 PF01433 Peptidase family M1 domain AL539_12160 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL539_12160 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL539_12170 PF17804 Tail specific protease N-terminal domain AL539_12170 PF03572 Peptidase family S41 AL539_12170 PF00595 PDZ domain AL539_12170 PF11818 C-terminal domain of tail specific protease (DUF3340) AL539_12175 PF04352 ProQ/FINO family AL539_12175 PF17516 ProQ C-terminal domain AL539_12180 PF13185 GAF domain AL539_12185 PF00005 ABC transporter AL539_12185 PF00664 ABC transporter transmembrane region AL539_12190 PF04403 Paraquat-inducible protein A AL539_12195 PF02470 MlaD protein AL539_12200 PF01189 16S rRNA methyltransferase RsmB/F AL539_12200 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL539_12200 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL539_12220 PF00793 DAHP synthetase I family AL539_12225 PF04461 Protein of unknown function (DUF520) AL539_12230 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_12230 PF10414 Sirohaem synthase dimerisation region AL539_12230 PF14824 Sirohaem biosynthesis protein central AL539_12240 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_12245 PF00528 Binding-protein-dependent transport system inner membrane component AL539_12250 PF00528 Binding-protein-dependent transport system inner membrane component AL539_12255 PF00005 ABC transporter AL539_12260 PF01027 Inhibitor of apoptosis-promoting Bax1 AL539_12270 PF04358 DsrC like protein AL539_12275 PF00708 Acylphosphatase AL539_12280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_12280 PF02743 Cache domain AL539_12280 PF00672 HAMP domain AL539_12285 PF17785 PUA-like domain AL539_12285 PF10672 S-adenosylmethionine-dependent methyltransferase AL539_12300 PF00691 OmpA family AL539_12330 PF00691 OmpA family AL539_12330 PF05736 OprF membrane domain AL539_12340 PF00990 Diguanylate cyclase, GGDEF domain AL539_12345 PF01614 Bacterial transcriptional regulator AL539_12345 PF09339 IclR helix-turn-helix domain AL539_12355 PF00248 Aldo/keto reductase family AL539_12360 PF03466 LysR substrate binding domain AL539_12360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_12370 PF03466 LysR substrate binding domain AL539_12375 PF07690 Major Facilitator Superfamily AL539_12385 PF08659 KR domain AL539_12385 PF00107 Zinc-binding dehydrogenase AL539_12385 PF14765 Polyketide synthase dehydratase AL539_12385 PF16197 Ketoacyl-synthetase C-terminal extension AL539_12385 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_12385 PF00698 Acyl transferase domain AL539_12385 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_12385 PF00550 Phosphopantetheine attachment site AL539_12385 PF08240 Alcohol dehydrogenase GroES-like domain AL539_12390 PF12833 Helix-turn-helix domain AL539_12390 PF02311 AraC-like ligand binding domain AL539_12395 PF00857 Isochorismatase family AL539_12400 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_12410 PF08240 Alcohol dehydrogenase GroES-like domain AL539_12410 PF00107 Zinc-binding dehydrogenase AL539_12415 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL539_12415 PF00809 Pterin binding enzyme AL539_12415 PF02607 B12 binding domain AL539_12415 PF02574 Homocysteine S-methyltransferase AL539_12415 PF02310 B12 binding domain AL539_12420 PF00005 ABC transporter AL539_12425 PF00528 Binding-protein-dependent transport system inner membrane component AL539_12430 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_12440 PF00267 Gram-negative porin AL539_12445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_12445 PF03466 LysR substrate binding domain AL539_12455 PF00873 AcrB/AcrD/AcrF family AL539_12460 PF03466 LysR substrate binding domain AL539_12460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_12470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_12470 PF03466 LysR substrate binding domain AL539_12475 PF01810 LysE type translocator AL539_12485 PF06508 Queuosine biosynthesis protein QueC AL539_12490 PF04055 Radical SAM superfamily AL539_12505 PF00089 Trypsin AL539_12515 PF16177 Acetyl-coenzyme A synthetase N-terminus AL539_12515 PF13193 AMP-binding enzyme C-terminal domain AL539_12515 PF00501 AMP-binding enzyme AL539_12520 PF04303 PrpF protein AL539_12525 PF00330 Aconitase family (aconitate hydratase) AL539_12525 PF00694 Aconitase C-terminal domain AL539_12530 PF00285 Citrate synthase, C-terminal domain AL539_12560 PF01970 Tripartite tricarboxylate transporter TctA family AL539_12570 PF01925 Sulfite exporter TauE/SafE AL539_12585 PF05844 YopD protein AL539_12595 PF07720 Tetratricopeptide repeat AL539_12600 PF04792 V antigen (LcrV) protein AL539_12610 PF09621 Type III secretion system regulator (LcrR) AL539_12615 PF00771 FHIPEP family AL539_12635 PF09059 TyeA AL539_12645 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL539_12645 PF18269 T3SS EscN ATPase C-terminal domain AL539_12645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_12660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL539_12665 PF00813 FliP family AL539_12670 PF01313 Bacterial export proteins, family 3 AL539_12675 PF01311 Bacterial export proteins, family 1 AL539_12680 PF01312 FlhB HrpN YscU SpaS Family AL539_12685 PF12852 Cupin AL539_12685 PF12833 Helix-turn-helix domain AL539_12715 PF02661 Fic/DOC family AL539_12725 PF02108 Flagellar assembly protein FliH AL539_12735 PF01514 Secretory protein of YscJ/FliF family AL539_12740 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AL539_12750 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AL539_12755 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AL539_12765 PF16693 Inner membrane component of T3SS, periplasmic domain AL539_12765 PF16697 Inner membrane component of T3SS, cytoplasmic domain AL539_12785 PF12833 Helix-turn-helix domain AL539_12805 PF00171 Aldehyde dehydrogenase family AL539_12810 PF00158 Sigma-54 interaction domain AL539_12810 PF01590 GAF domain AL539_12810 PF02954 Bacterial regulatory protein, Fis family AL539_12825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL539_12825 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL539_12830 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL539_12835 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL539_12835 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL539_12840 PF02311 AraC-like ligand binding domain AL539_12840 PF12833 Helix-turn-helix domain AL539_12845 PF07715 TonB-dependent Receptor Plug Domain AL539_12845 PF00593 TonB dependent receptor AL539_12850 PF00072 Response regulator receiver domain AL539_12850 PF12431 Transcriptional regulator AL539_12855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_12855 PF17203 Single cache domain 3 AL539_12855 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL539_12855 PF00989 PAS fold AL539_12870 PF13533 Biotin-lipoyl like AL539_12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_12885 PF03466 LysR substrate binding domain AL539_12900 PF08543 Phosphomethylpyrimidine kinase AL539_12905 PF00155 Aminotransferase class I and II AL539_12910 PF02080 TrkA-C domain AL539_12910 PF06826 Predicted Permease Membrane Region AL539_12920 PF13533 Biotin-lipoyl like AL539_12940 PF13091 PLD-like domain AL539_12950 PF11008 Protein of unknown function (DUF2846) AL539_12955 PF01810 LysE type translocator AL539_12960 PF01810 LysE type translocator AL539_12965 PF07237 Protein of unknown function (DUF1428) AL539_12985 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL539_12985 PF01411 tRNA synthetases class II (A) AL539_12985 PF02272 DHHA1 domain AL539_12990 PF13302 Acetyltransferase (GNAT) domain AL539_12995 PF12464 Maltose acetyltransferase AL539_12995 PF14602 Hexapeptide repeat of succinyl-transferase AL539_13105 PF03831 PhnA domain AL539_13105 PF08274 PhnA Zinc-Ribbon AL539_13200 PF13276 HTH-like domain AL539_13200 PF00665 Integrase core domain AL539_13200 PF13333 Integrase core domain AL539_13215 PF13344 Haloacid dehalogenase-like hydrolase AL539_13215 PF00293 NUDIX domain AL539_13485 PF13737 Transposase DDE domain AL539_13645 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL539_13680 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL539_13690 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL539_13775 PF13495 Phage integrase, N-terminal SAM-like domain AL539_13775 PF00589 Phage integrase family AL539_13790 PF13302 Acetyltransferase (GNAT) domain AL539_13795 PF00158 Sigma-54 interaction domain AL539_13795 PF18024 Helix-turn-helix domain AL539_13800 PF05128 Domain of unknown function (DUF697) AL539_13805 PF04317 YcjX-like family, DUF463 AL539_13825 PF00425 chorismate binding enzyme AL539_13825 PF04715 Anthranilate synthase component I, N terminal region AL539_13830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_13830 PF00512 His Kinase A (phospho-acceptor) domain AL539_13830 PF09308 LuxQ, periplasmic AL539_13830 PF00072 Response regulator receiver domain AL539_13840 PF00293 NUDIX domain AL539_13845 PF03222 Tryptophan/tyrosine permease family AL539_13850 PF03313 Serine dehydratase alpha chain AL539_13850 PF03315 Serine dehydratase beta chain AL539_13855 PF00563 EAL domain AL539_13855 PF04940 Sensors of blue-light using FAD AL539_13865 PF01242 6-pyruvoyl tetrahydropterin synthase AL539_13870 PF17200 Single Cache domain 2 AL539_13870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_13870 PF00672 HAMP domain AL539_13875 PF01336 OB-fold nucleic acid binding domain AL539_13875 PF00152 tRNA synthetases class II (D, K and N) AL539_13885 PF00155 Aminotransferase class I and II AL539_13885 PF00392 Bacterial regulatory proteins, gntR family AL539_13900 PF00155 Aminotransferase class I and II AL539_13920 PF00672 HAMP domain AL539_13920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_13925 PF02028 BCCT, betaine/carnitine/choline family transporter AL539_13935 PF00072 Response regulator receiver domain AL539_13935 PF00196 Bacterial regulatory proteins, luxR family AL539_13940 PF07730 Histidine kinase AL539_13940 PF17200 Single Cache domain 2 AL539_13945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL539_13955 PF03480 Bacterial extracellular solute-binding protein, family 7 AL539_13970 PF00753 Metallo-beta-lactamase superfamily AL539_13975 PF05951 Bacterial protein of unknown function (DUF882) AL539_13980 PF03734 L,D-transpeptidase catalytic domain AL539_13980 PF01471 Putative peptidoglycan binding domain AL539_14005 PF00925 GTP cyclohydrolase II AL539_14015 PF03918 Cytochrome C biogenesis protein AL539_14020 PF08534 Redoxin AL539_14025 PF01578 Cytochrome C assembly protein AL539_14025 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL539_14030 PF03916 Polysulphide reductase, NrfD AL539_14035 PF13247 4Fe-4S dicluster domain AL539_14045 PF02335 Cytochrome c552 AL539_14060 PF00521 DNA gyrase/topoisomerase IV, subunit A AL539_14060 PF03989 DNA gyrase C-terminal domain, beta-propeller AL539_14075 PF03477 ATP cone domain AL539_14075 PF00317 Ribonucleotide reductase, all-alpha domain AL539_14075 PF02867 Ribonucleotide reductase, barrel domain AL539_14080 PF00268 Ribonucleotide reductase, small chain AL539_14090 PF00994 Probable molybdopterin binding domain AL539_14105 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL539_14110 PF16653 Saccharopine dehydrogenase C-terminal domain AL539_14110 PF03435 Saccharopine dehydrogenase NADP binding domain AL539_14115 PF00202 Aminotransferase class-III AL539_14140 PF01066 CDP-alcohol phosphatidyltransferase AL539_14145 PF08459 UvrC Helix-hairpin-helix N-terminal AL539_14145 PF01541 GIY-YIG catalytic domain AL539_14145 PF02151 UvrB/uvrC motif AL539_14150 PF00196 Bacterial regulatory proteins, luxR family AL539_14150 PF00072 Response regulator receiver domain AL539_14155 PF03104 DNA polymerase family B, exonuclease domain AL539_14155 PF00136 DNA polymerase family B AL539_14165 PF01132 Elongation factor P (EF-P) OB domain AL539_14165 PF08207 Elongation factor P (EF-P) KOW-like domain AL539_14165 PF09285 Elongation factor P, C-terminal AL539_14170 PF04269 Protein of unknown function, DUF440 AL539_14175 PF00849 RNA pseudouridylate synthase AL539_14175 PF01479 S4 domain AL539_14185 PF01300 Telomere recombination AL539_14190 PF02811 PHP domain AL539_14195 PF08056 Tryptophan operon leader peptide AL539_14200 PF00425 chorismate binding enzyme AL539_14200 PF04715 Anthranilate synthase component I, N terminal region AL539_14205 PF00117 Glutamine amidotransferase class-I AL539_14210 PF00591 Glycosyl transferase family, a/b domain AL539_14210 PF02885 Glycosyl transferase family, helical bundle domain AL539_14215 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL539_14215 PF00218 Indole-3-glycerol phosphate synthase AL539_14220 PF00291 Pyridoxal-phosphate dependent enzyme AL539_14225 PF00290 Tryptophan synthase alpha chain AL539_14230 PF00027 Cyclic nucleotide-binding domain AL539_14230 PF13545 Crp-like helix-turn-helix domain AL539_14235 PF00501 AMP-binding enzyme AL539_14235 PF13193 AMP-binding enzyme C-terminal domain AL539_14245 PF00375 Sodium:dicarboxylate symporter family AL539_14250 PF17327 Acyl homoserine lactone synthase AL539_14255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_14255 PF00072 Response regulator receiver domain AL539_14265 PF04279 Intracellular septation protein A AL539_14270 PF03061 Thioesterase superfamily AL539_14275 PF03795 YCII-related domain AL539_14285 PF08267 Cobalamin-independent synthase, N-terminal domain AL539_14285 PF01717 Cobalamin-independent synthase, Catalytic domain AL539_14290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_14290 PF03466 LysR substrate binding domain AL539_14305 PF08448 PAS fold AL539_14305 PF00990 Diguanylate cyclase, GGDEF domain AL539_14305 PF00563 EAL domain AL539_14305 PF08447 PAS fold AL539_14310 PF08497 Radical SAM N-terminal AL539_14310 PF11842 Domain of unknown function (DUF3362) AL539_14310 PF04055 Radical SAM superfamily AL539_14335 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AL539_14340 PF00535 Glycosyl transferase family 2 AL539_14345 PF00072 Response regulator receiver domain AL539_14345 PF00486 Transcriptional regulatory protein, C terminal AL539_14350 PF00512 His Kinase A (phospho-acceptor) domain AL539_14350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_14350 PF00672 HAMP domain AL539_14365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_14365 PF03466 LysR substrate binding domain AL539_14370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_14370 PF00529 HlyD membrane-fusion protein of T1SS AL539_14380 PF01717 Cobalamin-independent synthase, Catalytic domain AL539_14380 PF08267 Cobalamin-independent synthase, N-terminal domain AL539_14400 PF12704 MacB-like periplasmic core domain AL539_14400 PF00005 ABC transporter AL539_14400 PF02687 FtsX-like permease family AL539_14405 PF02687 FtsX-like permease family AL539_14405 PF00005 ABC transporter AL539_14405 PF12704 MacB-like periplasmic core domain AL539_14410 PF12704 MacB-like periplasmic core domain AL539_14410 PF02687 FtsX-like permease family AL539_14410 PF00005 ABC transporter AL539_14420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_14440 PF00085 Thioredoxin AL539_14445 PF11412 Disulphide bond corrector protein DsbC AL539_14445 PF02683 Cytochrome C biogenesis protein transmembrane region AL539_14455 PF00072 Response regulator receiver domain AL539_14455 PF00196 Bacterial regulatory proteins, luxR family AL539_14460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_14460 PF00512 His Kinase A (phospho-acceptor) domain AL539_14465 PF13247 4Fe-4S dicluster domain AL539_14470 PF03916 Polysulphide reductase, NrfD AL539_14475 PF00384 Molybdopterin oxidoreductase AL539_14475 PF01568 Molydopterin dinucleotide binding domain AL539_14475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL539_14480 PF00034 Cytochrome c AL539_14485 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL539_14490 PF04403 Paraquat-inducible protein A AL539_14495 PF02470 MlaD protein AL539_14515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_14520 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL539_14525 PF18073 Rubredoxin metal binding domain AL539_14530 PF06305 Lipopolysaccharide assembly protein A domain AL539_14535 PF00216 Bacterial DNA-binding protein AL539_14540 PF00575 S1 RNA binding domain AL539_14545 PF02224 Cytidylate kinase AL539_14550 PF01343 Peptidase family S49 AL539_14550 PF08496 Peptidase family S49 N-terminal AL539_14555 PF00106 short chain dehydrogenase AL539_14570 PF02811 PHP domain AL539_14570 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL539_14570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL539_14570 PF14579 Helix-hairpin-helix motif AL539_14570 PF01336 OB-fold nucleic acid binding domain AL539_14575 PF00072 Response regulator receiver domain AL539_14575 PF01584 CheW-like domain AL539_14580 PF00480 ROK family AL539_14585 PF02887 Pyruvate kinase, alpha/beta domain AL539_14585 PF00224 Pyruvate kinase, barrel domain AL539_14590 PF01734 Patatin-like phospholipase AL539_14605 PF00209 Sodium:neurotransmitter symporter family AL539_14615 PF00367 phosphotransferase system, EIIB AL539_14615 PF02378 Phosphotransferase system, EIIC AL539_14620 PF01026 TatD related DNase AL539_14625 PF09115 DNA polymerase III, delta subunit, C terminal AL539_14630 PF02223 Thymidylate kinase AL539_14635 PF02618 YceG-like family AL539_14640 PF01063 Amino-transferase class IV AL539_14645 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_14645 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_14650 PF00550 Phosphopantetheine attachment site AL539_14660 PF00698 Acyl transferase domain AL539_14665 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL539_14665 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL539_14670 PF02504 Fatty acid synthesis protein AL539_14675 PF01783 Ribosomal L32p protein family AL539_14680 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL539_14685 PF02545 Maf-like protein AL539_14690 PF01479 S4 domain AL539_14690 PF00849 RNA pseudouridylate synthase AL539_14700 PF12111 Polyribonucleotide phosphorylase C terminal AL539_14700 PF00575 S1 RNA binding domain AL539_14700 PF10150 Ribonuclease E/G family AL539_14710 PF01740 STAS domain AL539_14710 PF00916 Sulfate permease family AL539_14715 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL539_14720 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL539_14720 PF12557 Cob(I)alamin adenosyltransferase N terminal AL539_14730 PF00485 Phosphoribulokinase / Uridine kinase family AL539_14735 PF10609 NUBPL iron-transfer P-loop NTPase AL539_14740 PF01588 Putative tRNA binding domain AL539_14740 PF09334 tRNA synthetases class I (M) AL539_14765 PF07840 FadR C-terminal domain AL539_14765 PF00392 Bacterial regulatory proteins, gntR family AL539_14770 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL539_14775 PF02600 Disulfide bond formation protein DsbB AL539_14780 PF02810 SEC-C motif AL539_14780 PF03695 Uncharacterised protein family (UPF0149) AL539_14785 PF01207 Dihydrouridine synthase (Dus) AL539_14790 PF00990 Diguanylate cyclase, GGDEF domain AL539_14790 PF17158 Membrane-associated sensor, integral membrane domain AL539_14795 PF00128 Alpha amylase, catalytic domain AL539_14795 PF02903 Alpha amylase, N-terminal ig-like domain AL539_14800 PF00005 ABC transporter AL539_14805 PF02653 Branched-chain amino acid transport system / permease component AL539_14815 PF04217 Protein of unknown function, DUF412 AL539_14820 PF00871 Acetokinase family AL539_14825 PF07085 DRTGG domain AL539_14825 PF01515 Phosphate acetyl/butaryl transferase AL539_14835 PF13409 Glutathione S-transferase, N-terminal domain AL539_14840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_14840 PF00005 ABC transporter AL539_14845 PF00005 ABC transporter AL539_14845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_14850 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_14850 PF00528 Binding-protein-dependent transport system inner membrane component AL539_14855 PF00528 Binding-protein-dependent transport system inner membrane component AL539_14860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_14870 PF02391 MoaE protein AL539_14875 PF02597 ThiS family AL539_14880 PF01967 MoaC family AL539_14885 PF00994 Probable molybdopterin binding domain AL539_14890 PF06463 Molybdenum Cofactor Synthesis C AL539_14890 PF04055 Radical SAM superfamily AL539_14895 PF01933 Uncharacterised protein family UPF0052 AL539_14900 PF01627 Hpt domain AL539_14905 PF02954 Bacterial regulatory protein, Fis family AL539_14905 PF00158 Sigma-54 interaction domain AL539_14905 PF00072 Response regulator receiver domain AL539_14910 PF00271 Helicase conserved C-terminal domain AL539_14910 PF12344 Ultra-violet resistance protein B AL539_14910 PF02151 UvrB/uvrC motif AL539_14910 PF17757 UvrB interaction domain AL539_14910 PF04851 Type III restriction enzyme, res subunit AL539_14920 PF01228 Glycine radical AL539_14920 PF02901 Pyruvate formate lyase-like AL539_14925 PF02508 Rnf-Nqr subunit, membrane protein AL539_14930 PF04060 Putative Fe-S cluster AL539_14935 PF10531 SLBB domain AL539_14935 PF12838 4Fe-4S dicluster domain AL539_14935 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL539_14935 PF13375 RnfC Barrel sandwich hybrid domain AL539_14940 PF03116 NQR2, RnfD, RnfE family AL539_14945 PF04205 FMN-binding domain AL539_14950 PF02508 Rnf-Nqr subunit, membrane protein AL539_14955 PF10576 Iron-sulfur binding domain of endonuclease III AL539_14955 PF00633 Helix-hairpin-helix motif AL539_14955 PF00730 HhH-GPD superfamily base excision DNA repair protein AL539_14960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_14965 PF10952 Protein of unknown function (DUF2753) AL539_14970 PF00691 OmpA family AL539_14970 PF18393 MotY N-terminal domain AL539_14980 PF00929 Exonuclease AL539_14985 PF13726 Na+-H+ antiporter family AL539_14985 PF03553 Na+/H+ antiporter family AL539_15005 PF00462 Glutaredoxin AL539_15010 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL539_15010 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL539_15025 PF00465 Iron-containing alcohol dehydrogenase AL539_15025 PF00171 Aldehyde dehydrogenase family AL539_15030 PF01914 MarC family integral membrane protein AL539_15035 PF00520 Ion transport protein AL539_15035 PF00027 Cyclic nucleotide-binding domain AL539_15040 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL539_15040 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL539_15045 PF03553 Na+/H+ antiporter family AL539_15060 PF04245 37-kD nucleoid-associated bacterial protein AL539_15065 PF07208 Protein of unknown function (DUF1414) AL539_15070 PF11893 Domain of unknown function (DUF3413) AL539_15070 PF00884 Sulfatase AL539_15080 PF00850 Histone deacetylase domain AL539_15085 PF00106 short chain dehydrogenase AL539_15095 PF01131 DNA topoisomerase AL539_15095 PF01751 Toprim domain AL539_15100 PF00881 Nitroreductase family AL539_15110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_15110 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_15115 PF01343 Peptidase family S49 AL539_15120 PF00710 Asparaginase, N-terminal AL539_15120 PF17763 Glutaminase/Asparaginase C-terminal domain AL539_15125 PF07023 Protein of unknown function (DUF1315) AL539_15135 PF01641 SelR domain AL539_15140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL539_15140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_15145 PF01263 Aldose 1-epimerase AL539_15150 PF13426 PAS domain AL539_15150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_15150 PF08447 PAS fold AL539_15155 PF13847 Methyltransferase domain AL539_15175 PF00245 Alkaline phosphatase AL539_15185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL539_15190 PF03992 Antibiotic biosynthesis monooxygenase AL539_15195 PF05552 Conserved TM helix AL539_15195 PF00924 Mechanosensitive ion channel AL539_15200 PF03692 Putative zinc- or iron-chelating domain AL539_15205 PF04226 Transglycosylase associated protein AL539_15210 PF03692 Putative zinc- or iron-chelating domain AL539_15215 PF00230 Major intrinsic protein AL539_15220 PF13662 Toprim domain AL539_15220 PF02132 RecR protein AL539_15225 PF02575 YbaB/EbfC DNA-binding family AL539_15230 PF12169 DNA polymerase III subunits gamma and tau domain III AL539_15230 PF12170 DNA polymerase III tau subunit V interacting with alpha AL539_15230 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL539_15235 PF00156 Phosphoribosyl transferase domain AL539_15240 PF04304 Protein of unknown function (DUF454) AL539_15250 PF00072 Response regulator receiver domain AL539_15255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_15255 PF03466 LysR substrate binding domain AL539_15260 PF00156 Phosphoribosyl transferase domain AL539_15265 PF02674 Colicin V production protein AL539_15270 PF05036 Sporulation related domain AL539_15275 PF08245 Mur ligase middle domain AL539_15275 PF02875 Mur ligase family, glutamate ligase domain AL539_15280 PF17848 Acetyl-coA carboxylase zinc finger domain AL539_15280 PF01039 Carboxyl transferase domain AL539_15290 PF01416 tRNA pseudouridine synthase AL539_15300 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL539_15300 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL539_15305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_15305 PF11890 Domain of unknown function (DUF3410) AL539_15305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL539_15315 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_15315 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_15320 PF01266 FAD dependent oxidoreductase AL539_15320 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL539_15325 PF03358 NADPH-dependent FMN reductase AL539_15335 PF08891 YfcL protein AL539_15340 PF04315 Elongation factor P hydroxylase AL539_15350 PF03458 UPF0126 domain AL539_15355 PF01264 Chorismate synthase AL539_15360 PF05175 Methyltransferase small domain AL539_15365 PF01713 Smr domain AL539_15370 PF00300 Histidine phosphatase superfamily (branch 1) AL539_15375 PF16187 Middle or third domain of peptidase_M16 AL539_15375 PF05193 Peptidase M16 inactive domain AL539_15375 PF00675 Insulinase (Peptidase family M16) AL539_15385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL539_15385 PF00378 Enoyl-CoA hydratase/isomerase AL539_15385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL539_15390 PF00108 Thiolase, N-terminal domain AL539_15390 PF02803 Thiolase, C-terminal domain AL539_15400 PF08281 Sigma-70, region 4 AL539_15400 PF04542 Sigma-70 region 2 AL539_15410 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_15415 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL539_15445 PF09370 Phosphoenolpyruvate hydrolase-like AL539_15460 PF04333 MlaA lipoprotein AL539_15465 PF03918 Cytochrome C biogenesis protein AL539_15470 PF03918 Cytochrome C biogenesis protein AL539_15475 PF08534 Redoxin AL539_15480 PF01578 Cytochrome C assembly protein AL539_15480 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL539_15485 PF03100 CcmE AL539_15490 PF04995 Heme exporter protein D (CcmD) AL539_15495 PF01578 Cytochrome C assembly protein AL539_15500 PF03379 CcmB protein AL539_15505 PF00005 ABC transporter AL539_15515 PF01584 CheW-like domain AL539_15525 PF13614 AAA domain AL539_15530 PF01339 CheB methylesterase AL539_15530 PF00072 Response regulator receiver domain AL539_15535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_15535 PF07194 P2 response regulator binding domain AL539_15535 PF01627 Hpt domain AL539_15535 PF02895 Signal transducing histidine kinase, homodimeric domain AL539_15535 PF01584 CheW-like domain AL539_15540 PF04344 Chemotaxis phosphatase, CheZ AL539_15545 PF00072 Response regulator receiver domain AL539_15550 PF04545 Sigma-70, region 4 AL539_15550 PF04542 Sigma-70 region 2 AL539_15550 PF04539 Sigma-70 region 3 AL539_15555 PF10609 NUBPL iron-transfer P-loop NTPase AL539_15560 PF00448 SRP54-type protein, GTPase domain AL539_15565 PF00771 FHIPEP family AL539_15570 PF01312 FlhB HrpN YscU SpaS Family AL539_15575 PF01311 Bacterial export proteins, family 1 AL539_15580 PF01313 Bacterial export proteins, family 3 AL539_15585 PF00813 FliP family AL539_15590 PF04347 Flagellar biosynthesis protein, FliO AL539_15595 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL539_15600 PF02154 Flagellar motor switch protein FliM AL539_15600 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL539_15625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_15625 PF18269 T3SS EscN ATPase C-terminal domain AL539_15635 PF14842 FliG N-terminal domain AL539_15635 PF14841 FliG middle domain AL539_15635 PF01706 FliG C-terminal domain AL539_15640 PF01514 Secretory protein of YscJ/FliF family AL539_15640 PF08345 Flagellar M-ring protein C-terminal AL539_15645 PF02049 Flagellar hook-basal body complex protein FliE AL539_15650 PF02954 Bacterial regulatory protein, Fis family AL539_15650 PF00072 Response regulator receiver domain AL539_15650 PF00158 Sigma-54 interaction domain AL539_15655 PF00512 His Kinase A (phospho-acceptor) domain AL539_15655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_15660 PF00072 Response regulator receiver domain AL539_15660 PF00158 Sigma-54 interaction domain AL539_15660 PF02954 Bacterial regulatory protein, Fis family AL539_15665 PF02561 Flagellar protein FliS AL539_15675 PF07196 Flagellin hook IN motif AL539_15675 PF02465 Flagellar hook-associated protein 2 N-terminus AL539_15675 PF07195 Flagellar hook-associated protein 2 C-terminus AL539_15680 PF03646 FlaG protein AL539_15685 PF00669 Bacterial flagellin N-terminal helical region AL539_15685 PF07196 Flagellin hook IN motif AL539_15685 PF00700 Bacterial flagellin C-terminal helical region AL539_15690 PF07196 Flagellin hook IN motif AL539_15690 PF00669 Bacterial flagellin N-terminal helical region AL539_15690 PF00700 Bacterial flagellin C-terminal helical region AL539_15700 PF07196 Flagellin hook IN motif AL539_15700 PF00700 Bacterial flagellin C-terminal helical region AL539_15700 PF00669 Bacterial flagellin N-terminal helical region AL539_15705 PF04261 Dyp-type peroxidase family AL539_15710 PF11143 Protein of unknown function (DUF2919) AL539_15730 PF03960 ArsC family AL539_15735 PF01546 Peptidase family M20/M25/M40 AL539_15735 PF07687 Peptidase dimerisation domain AL539_15755 PF00701 Dihydrodipicolinate synthetase family AL539_15765 PF00578 AhpC/TSA family AL539_15770 PF01594 AI-2E family transporter AL539_15780 PF13181 Tetratricopeptide repeat AL539_15780 PF01435 Peptidase family M48 AL539_15785 PF03960 ArsC family AL539_15790 PF03358 NADPH-dependent FMN reductase AL539_15805 PF00860 Permease family AL539_15815 PF02769 AIR synthase related protein, C-terminal domain AL539_15815 PF00586 AIR synthase related protein, N-terminal domain AL539_15820 PF00551 Formyl transferase AL539_15825 PF13230 Glutamine amidotransferases class-II AL539_15830 PF13580 SIS domain AL539_15835 PF09317 Domain of unknown function (DUF1974) AL539_15835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL539_15835 PF02770 Acyl-CoA dehydrogenase, middle domain AL539_15835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL539_15840 PF00916 Sulfate permease family AL539_15840 PF01740 STAS domain AL539_15865 PF00929 Exonuclease AL539_15870 PF00075 RNase H AL539_15875 PF08241 Methyltransferase domain AL539_15880 PF00753 Metallo-beta-lactamase superfamily AL539_15880 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL539_15885 PF01476 LysM domain AL539_15885 PF01464 Transglycosylase SLT domain AL539_15895 PF03372 Endonuclease/Exonuclease/phosphatase family AL539_15900 PF00543 Nitrogen regulatory protein P-II AL539_15905 PF00034 Cytochrome c AL539_15910 PF01171 PP-loop family AL539_15910 PF11734 TilS substrate C-terminal domain AL539_15910 PF09179 TilS substrate binding domain AL539_15915 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL539_15920 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL539_15920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL539_15920 PF14579 Helix-hairpin-helix motif AL539_15920 PF01336 OB-fold nucleic acid binding domain AL539_15920 PF02811 PHP domain AL539_15925 PF01351 Ribonuclease HII AL539_15930 PF02684 Lipid-A-disaccharide synthetase AL539_15935 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL539_15935 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_15940 PF07977 FabA-like domain AL539_15945 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_15945 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL539_15950 PF03938 Outer membrane protein (OmpH-like) AL539_15955 PF07244 Surface antigen variable number repeat AL539_15955 PF01103 Surface antigen AL539_15960 PF17820 PDZ domain AL539_15960 PF02163 Peptidase family M50 AL539_15965 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL539_15965 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL539_15965 PF13288 DXP reductoisomerase C-terminal domain AL539_15975 PF01255 Putative undecaprenyl diphosphate synthase AL539_15980 PF01765 Ribosome recycling factor AL539_15985 PF00696 Amino acid kinase family AL539_15990 PF00889 Elongation factor TS AL539_15995 PF00318 Ribosomal protein S2 AL539_16000 PF00557 Metallopeptidase family M24 AL539_16005 PF01909 Nucleotidyltransferase domain AL539_16005 PF01966 HD domain AL539_16005 PF08335 GlnD PII-uridylyltransferase AL539_16005 PF01842 ACT domain AL539_16010 PF11944 Protein of unknown function (DUF3461) AL539_16015 PF00849 RNA pseudouridylate synthase AL539_16020 PF04287 tRNA pseudouridine synthase C AL539_16050 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL539_16055 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL539_16055 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL539_16060 PF01370 NAD dependent epimerase/dehydratase family AL539_16085 PF03806 AbgT putative transporter family AL539_16090 PF00444 Ribosomal protein L36 AL539_16095 PF01197 Ribosomal protein L31 AL539_16100 PF18389 TrmO C-terminal domain AL539_16100 PF01980 tRNA-methyltransferase O AL539_16105 PF04073 Aminoacyl-tRNA editing domain AL539_16105 PF03129 Anticodon binding domain AL539_16105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL539_16115 PF06786 Uncharacterised protein family (UPF0253) AL539_16125 PF00209 Sodium:neurotransmitter symporter family AL539_16130 PF00704 Glycosyl hydrolases family 18 AL539_16130 PF06483 Chitinase C AL539_16140 PF03449 Transcription elongation factor, N-terminal AL539_16140 PF01272 Transcription elongation factor, GreA/GreB, C-term AL539_16145 PF09382 RQC domain AL539_16145 PF16124 RecQ zinc-binding AL539_16145 PF00570 HRDC domain AL539_16145 PF00270 DEAD/DEAH box helicase AL539_16145 PF00271 Helicase conserved C-terminal domain AL539_16150 PF00817 impB/mucB/samB family AL539_16150 PF11798 IMS family HHH motif AL539_16150 PF11799 impB/mucB/samB family C-terminal domain AL539_16160 PF00990 Diguanylate cyclase, GGDEF domain AL539_16160 PF00072 Response regulator receiver domain AL539_16170 PF02424 ApbE family AL539_16175 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_16175 PF00970 Oxidoreductase FAD-binding domain AL539_16175 PF00175 Oxidoreductase NAD-binding domain AL539_16180 PF02508 Rnf-Nqr subunit, membrane protein AL539_16185 PF02508 Rnf-Nqr subunit, membrane protein AL539_16190 PF04205 FMN-binding domain AL539_16195 PF03116 NQR2, RnfD, RnfE family AL539_16200 PF11973 NQRA C-terminal domain AL539_16200 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL539_16205 PF01722 BolA-like protein AL539_16210 PF05175 Methyltransferase small domain AL539_16215 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL539_16215 PF03923 Uncharacterized lipoprotein AL539_16220 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL539_16225 PF07690 Major Facilitator Superfamily AL539_16235 PF04542 Sigma-70 region 2 AL539_16235 PF04545 Sigma-70, region 4 AL539_16255 PF03502 Nucleoside-specific channel-forming protein, Tsx AL539_16260 PF02558 Ketopantoate reductase PanE/ApbA AL539_16260 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL539_16265 PF01965 DJ-1/PfpI family AL539_16270 PF00266 Aminotransferase class-V AL539_16275 PF00990 Diguanylate cyclase, GGDEF domain AL539_16275 PF17158 Membrane-associated sensor, integral membrane domain AL539_16280 PF02657 Fe-S metabolism associated domain AL539_16285 PF00899 ThiF family AL539_16290 PF03562 MltA specific insert domain AL539_16290 PF06725 3D domain AL539_16305 PF00583 Acetyltransferase (GNAT) family AL539_16305 PF00696 Amino acid kinase family AL539_16325 PF13538 UvrD-like helicase C-terminal domain AL539_16330 PF00580 UvrD/REP helicase N-terminal domain AL539_16330 PF13361 UvrD-like helicase C-terminal domain AL539_16330 PF12705 PD-(D/E)XK nuclease superfamily AL539_16335 PF17946 RecC C-terminal domain AL539_16340 PF11893 Domain of unknown function (DUF3413) AL539_16340 PF00884 Sulfatase AL539_16350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_16350 PF03466 LysR substrate binding domain AL539_16355 PF07130 YebG protein AL539_16370 PF14602 Hexapeptide repeat of succinyl-transferase AL539_16370 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL539_16375 PF03009 Glycerophosphoryl diester phosphodiesterase family AL539_16380 PF07690 Major Facilitator Superfamily AL539_16390 PF00230 Major intrinsic protein AL539_16395 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL539_16395 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL539_16400 PF08220 DeoR-like helix-turn-helix domain AL539_16400 PF00455 DeoR C terminal sensor domain AL539_16405 PF01266 FAD dependent oxidoreductase AL539_16405 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL539_16410 PF01544 CorA-like Mg2+ transporter protein AL539_16430 PF00356 Bacterial regulatory proteins, lacI family AL539_16435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_16435 PF03466 LysR substrate binding domain AL539_16445 PF00196 Bacterial regulatory proteins, luxR family AL539_16475 PF00501 AMP-binding enzyme AL539_16485 PF03466 LysR substrate binding domain AL539_16485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_16490 PF14492 Elongation Factor G, domain II AL539_16490 PF03764 Elongation factor G, domain IV AL539_16490 PF00009 Elongation factor Tu GTP binding domain AL539_16490 PF03144 Elongation factor Tu domain 2 AL539_16490 PF00679 Elongation factor G C-terminus AL539_16495 PF18073 Rubredoxin metal binding domain AL539_16505 PF18429 Domain of unknown function (DUF5609) AL539_16515 PF01048 Phosphorylase superfamily AL539_16520 PF01676 Metalloenzyme superfamily AL539_16525 PF02885 Glycosyl transferase family, helical bundle domain AL539_16525 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL539_16525 PF00591 Glycosyl transferase family, a/b domain AL539_16530 PF01791 DeoC/LacD family aldolase AL539_16535 PF07662 Na+ dependent nucleoside transporter C-terminus AL539_16535 PF07670 Nucleoside recognition AL539_16535 PF01773 Na+ dependent nucleoside transporter N-terminus AL539_16540 PF01026 TatD related DNase AL539_16550 PF16658 Class II release factor RF3, C-terminal domain AL539_16550 PF03144 Elongation factor Tu domain 2 AL539_16550 PF00009 Elongation factor Tu GTP binding domain AL539_16570 PF13508 Acetyltransferase (GNAT) domain AL539_16585 PF03707 Bacterial signalling protein N terminal repeat AL539_16585 PF00990 Diguanylate cyclase, GGDEF domain AL539_16585 PF00563 EAL domain AL539_16600 PF01554 MatE AL539_16610 PF13181 Tetratricopeptide repeat AL539_16610 PF07719 Tetratricopeptide repeat AL539_16615 PF00013 KH domain AL539_16615 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL539_16615 PF00575 S1 RNA binding domain AL539_16615 PF03725 3' exoribonuclease family, domain 2 AL539_16615 PF01138 3' exoribonuclease family, domain 1 AL539_16620 PF00312 Ribosomal protein S15 AL539_16625 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL539_16625 PF09157 Pseudouridine synthase II TruB, C-terminal AL539_16625 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL539_16630 PF02033 Ribosome-binding factor A AL539_16635 PF08364 Bacterial translation initiation factor IF-2 associated region AL539_16635 PF11987 Translation-initiation factor 2 AL539_16635 PF04760 Translation initiation factor IF-2, N-terminal region AL539_16635 PF00009 Elongation factor Tu GTP binding domain AL539_16640 PF08529 NusA N-terminal domain AL539_16640 PF00575 S1 RNA binding domain AL539_16640 PF13184 NusA-like KH domain AL539_16645 PF17384 RimP C-terminal SH3 domain AL539_16645 PF02576 RimP N-terminal domain AL539_16660 PF03840 Preprotein translocase SecG subunit AL539_16670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL539_16670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL539_16670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL539_16670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL539_16675 PF00809 Pterin binding enzyme AL539_16680 PF00004 ATPase family associated with various cellular activities (AAA) AL539_16680 PF01434 Peptidase family M41 AL539_16680 PF06480 FtsH Extracellular AL539_16680 PF17862 AAA+ lid domain AL539_16685 PF01728 FtsJ-like methyltransferase AL539_16690 PF01985 CRS1 / YhbY (CRM) domain AL539_16695 PF03449 Transcription elongation factor, N-terminal AL539_16695 PF01272 Transcription elongation factor, GreA/GreB, C-term AL539_16700 PF13609 Gram-negative porin AL539_16705 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL539_16715 PF00579 tRNA synthetases class I (W and Y) AL539_16720 PF01551 Peptidase family M23 AL539_16720 PF08525 Opacity-associated protein A N-terminal motif AL539_16720 PF01476 LysM domain AL539_16725 PF00873 AcrB/AcrD/AcrF family AL539_16735 PF01521 Iron-sulphur cluster biosynthesis AL539_16740 PF00202 Aminotransferase class-III AL539_16745 PF01594 AI-2E family transporter AL539_16750 PF08468 Methyltransferase small domain N-terminal AL539_16750 PF05175 Methyltransferase small domain AL539_16755 PF09308 LuxQ, periplasmic AL539_16755 PF00072 Response regulator receiver domain AL539_16755 PF00512 His Kinase A (phospho-acceptor) domain AL539_16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_16760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_16765 PF00528 Binding-protein-dependent transport system inner membrane component AL539_16770 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_16770 PF00528 Binding-protein-dependent transport system inner membrane component AL539_16775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_16775 PF00005 ABC transporter AL539_16780 PF00005 ABC transporter AL539_16780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_16790 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL539_16795 PF00728 Glycosyl hydrolase family 20, catalytic domain AL539_16795 PF02838 Glycosyl hydrolase family 20, domain 2 AL539_16800 PF06165 Glycosyltransferase family 36 AL539_16800 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL539_16805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL539_16805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL539_16805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL539_16805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL539_16810 PF00005 ABC transporter AL539_16810 PF08402 TOBE domain AL539_16820 PF13416 Bacterial extracellular solute-binding protein AL539_16825 PF00909 Ammonium Transporter Family AL539_16830 PF00543 Nitrogen regulatory protein P-II AL539_16835 PF06062 Uncharacterised protein family (UPF0231) AL539_16840 PF00330 Aconitase family (aconitate hydratase) AL539_16840 PF06434 Aconitate hydratase 2 N-terminus AL539_16840 PF11791 Aconitate B N-terminal domain AL539_16845 PF01734 Patatin-like phospholipase AL539_16850 PF00912 Transglycosylase AL539_16850 PF00905 Penicillin binding protein transpeptidase domain AL539_16850 PF14814 Bifunctional transglycosylase second domain AL539_16855 PF00270 DEAD/DEAH box helicase AL539_16855 PF04408 Helicase associated domain (HA2) AL539_16855 PF00271 Helicase conserved C-terminal domain AL539_16855 PF08482 ATP-dependent helicase C-terminal AL539_16860 PF03749 Sugar fermentation stimulation protein RE domain AL539_16860 PF17746 SfsA N-terminal OB domain AL539_16865 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL539_16870 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL539_16875 PF01743 Poly A polymerase head domain AL539_16875 PF12627 Probable RNA and SrmB- binding site of polymerase A AL539_16875 PF12626 Polymerase A arginine-rich C-terminus AL539_16880 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL539_16885 PF02548 Ketopantoate hydroxymethyltransferase AL539_16890 PF02569 Pantoate-beta-alanine ligase AL539_16895 PF03279 Bacterial lipid A biosynthesis acyltransferase AL539_16905 PF01061 ABC-2 type transporter AL539_16910 PF00005 ABC transporter AL539_16915 PF01740 STAS domain AL539_16915 PF00916 Sulfate permease family AL539_16920 PF00484 Carbonic anhydrase AL539_16925 PF00156 Phosphoribosyl transferase domain AL539_16930 PF00440 Bacterial regulatory proteins, tetR family AL539_16935 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_16935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_16940 PF00364 Biotin-requiring enzyme AL539_16940 PF02817 e3 binding domain AL539_16940 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL539_16945 PF17831 Pyruvate dehydrogenase E1 component middle domain AL539_16945 PF00456 Transketolase, thiamine diphosphate binding domain AL539_16950 PF07729 FCD domain AL539_16950 PF00392 Bacterial regulatory proteins, gntR family AL539_16955 PF01510 N-acetylmuramoyl-L-alanine amidase AL539_16960 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL539_16960 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL539_16965 PF07963 Prokaryotic N-terminal methylation motif AL539_16965 PF00114 Pilin (bacterial filament) AL539_16970 PF00437 Type II/IV secretion system protein AL539_16970 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL539_16975 PF00482 Type II secretion system (T2SS), protein F AL539_16980 PF06750 Bacterial Peptidase A24 N-terminal domain AL539_16980 PF01478 Type IV leader peptidase family AL539_16985 PF01121 Dephospho-CoA kinase AL539_16990 PF07072 Cell division protein AL539_16995 PF03884 DNA gyrase inhibitor YacG AL539_17000 PF01245 Ribosomal protein L19 AL539_17005 PF01746 tRNA (Guanine-1)-methyltransferase AL539_17010 PF01782 RimM N-terminal domain AL539_17010 PF05239 PRC-barrel domain AL539_17015 PF00886 Ribosomal protein S16 AL539_17020 PF02978 Signal peptide binding domain AL539_17020 PF00448 SRP54-type protein, GTPase domain AL539_17020 PF02881 SRP54-type protein, helical bundle domain AL539_17025 PF01578 Cytochrome C assembly protein AL539_17030 PF01595 Cyclin M transmembrane N-terminal domain AL539_17030 PF03471 Transporter associated domain AL539_17030 PF00571 CBS domain AL539_17035 PF02664 S-Ribosylhomocysteinase (LuxS) AL539_17045 PF04262 Glutamate-cysteine ligase AL539_17050 PF00675 Insulinase (Peptidase family M16) AL539_17050 PF05193 Peptidase M16 inactive domain AL539_17055 PF09335 SNARE associated Golgi protein AL539_17065 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL539_17070 PF02436 Conserved carboxylase domain AL539_17070 PF00682 HMGL-like AL539_17070 PF00364 Biotin-requiring enzyme AL539_17075 PF04277 Oxaloacetate decarboxylase, gamma chain AL539_17130 PF02599 Global regulator protein family AL539_17135 PF01842 ACT domain AL539_17135 PF00696 Amino acid kinase family AL539_17135 PF13840 ACT domain AL539_17140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL539_17140 PF01411 tRNA synthetases class II (A) AL539_17140 PF02272 DHHA1 domain AL539_17145 PF02631 RecX family AL539_17150 PF00154 recA bacterial DNA recombination protein AL539_17155 PF02464 Competence-damaged protein AL539_17160 PF00488 MutS domain V AL539_17160 PF05190 MutS family domain IV AL539_17160 PF05188 MutS domain II AL539_17160 PF01624 MutS domain I AL539_17160 PF05192 MutS domain III AL539_17165 PF00140 Sigma-70 factor, region 1.2 AL539_17165 PF04542 Sigma-70 region 2 AL539_17165 PF04539 Sigma-70 region 3 AL539_17165 PF04545 Sigma-70, region 4 AL539_17170 PF01476 LysM domain AL539_17170 PF01551 Peptidase family M23 AL539_17180 PF01975 Survival protein SurE AL539_17185 PF01142 tRNA pseudouridine synthase D (TruD) AL539_17190 PF02542 YgbB family AL539_17195 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL539_17200 PF04977 Septum formation initiator AL539_17205 PF03952 Enolase, N-terminal domain AL539_17205 PF00113 Enolase, C-terminal TIM barrel domain AL539_17210 PF00117 Glutamine amidotransferase class-I AL539_17210 PF06418 CTP synthase N-terminus AL539_17215 PF03819 MazG nucleotide pyrophosphohydrolase domain AL539_17220 PF04607 Region found in RelA / SpoT proteins AL539_17220 PF02824 TGS domain AL539_17220 PF13291 ACT domain AL539_17230 PF01938 TRAM domain AL539_17230 PF05958 tRNA (Uracil-5-)-methyltransferase AL539_17240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL539_17240 PF00072 Response regulator receiver domain AL539_17240 PF01627 Hpt domain AL539_17240 PF00512 His Kinase A (phospho-acceptor) domain AL539_17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_17240 PF00672 HAMP domain AL539_17245 PF01648 4'-phosphopantetheinyl transferase superfamily AL539_17250 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL539_17255 PF02565 Recombination protein O C terminal AL539_17255 PF11967 Recombination protein O N terminal AL539_17260 PF07650 KH domain AL539_17260 PF01926 50S ribosome-binding GTPase AL539_17265 PF14622 Ribonuclease-III-like AL539_17265 PF00035 Double-stranded RNA binding motif AL539_17270 PF10502 Signal peptidase, peptidase S26 AL539_17275 PF06421 GTP-binding protein LepA C-terminus AL539_17275 PF00009 Elongation factor Tu GTP binding domain AL539_17275 PF00679 Elongation factor G C-terminus AL539_17275 PF03144 Elongation factor Tu domain 2 AL539_17285 PF03888 MucB/RseB N-terminal domain AL539_17285 PF17188 MucB/RseB C-terminal domain AL539_17290 PF03873 Anti sigma-E protein RseA, C-terminal domain AL539_17290 PF03872 Anti sigma-E protein RseA, N-terminal domain AL539_17295 PF04542 Sigma-70 region 2 AL539_17295 PF08281 Sigma-70, region 4 AL539_17305 PF02910 Fumarate reductase flavoprotein C-term AL539_17305 PF00890 FAD binding domain AL539_17315 PF03937 Flavinator of succinate dehydrogenase AL539_17320 PF01571 Aminomethyltransferase folate-binding domain AL539_17335 PF01494 FAD binding domain AL539_17340 PF01494 FAD binding domain AL539_17345 PF03695 Uncharacterised protein family (UPF0149) AL539_17355 PF05164 Cell division protein ZapA AL539_17365 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL539_17370 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL539_17375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_17375 PF01842 ACT domain AL539_17375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL539_17380 PF04402 Protein of unknown function (DUF541) AL539_17385 PF03466 LysR substrate binding domain AL539_17385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_17390 PF01810 LysE type translocator AL539_17400 PF00924 Mechanosensitive ion channel AL539_17400 PF05552 Conserved TM helix AL539_17405 PF01116 Fructose-bisphosphate aldolase class-II AL539_17410 PF00162 Phosphoglycerate kinase AL539_17415 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_17415 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL539_17420 PF00593 TonB dependent receptor AL539_17420 PF07715 TonB-dependent Receptor Plug Domain AL539_17425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_17425 PF03466 LysR substrate binding domain AL539_17430 PF00456 Transketolase, thiamine diphosphate binding domain AL539_17430 PF02779 Transketolase, pyrimidine binding domain AL539_17430 PF02780 Transketolase, C-terminal domain AL539_17440 PF02772 S-adenosylmethionine synthetase, central domain AL539_17440 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL539_17440 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL539_17450 PF10263 SprT-like family AL539_17450 PF17283 SprT-like zinc ribbon domain AL539_17455 PF04231 Endonuclease I AL539_17460 PF04452 RNA methyltransferase AL539_17465 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL539_17465 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL539_17470 PF02622 Uncharacterized ACR, COG1678 AL539_17475 PF03652 Holliday junction resolvase AL539_17480 PF00437 Type II/IV secretion system protein AL539_17485 PF00437 Type II/IV secretion system protein AL539_17490 PF01168 Alanine racemase, N-terminal domain AL539_17495 PF03807 NADP oxidoreductase coenzyme F420-dependent AL539_17495 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL539_17500 PF02325 YGGT family AL539_17505 PF02594 Uncharacterised ACR, YggU family COG1872 AL539_17515 PF01725 Ham1 family AL539_17520 PF06969 HemN C-terminal domain AL539_17520 PF04055 Radical SAM superfamily AL539_17525 PF04960 Glutaminase AL539_17530 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL539_17535 PF02390 Putative methyltransferase AL539_17540 PF14815 NUDIX domain AL539_17540 PF00730 HhH-GPD superfamily base excision DNA repair protein AL539_17560 PF00753 Metallo-beta-lactamase superfamily AL539_17560 PF14863 Alkyl sulfatase dimerisation AL539_17560 PF14864 Alkyl sulfatase C-terminal AL539_17570 PF01425 Amidase AL539_17580 PF13361 UvrD-like helicase C-terminal domain AL539_17580 PF12705 PD-(D/E)XK nuclease superfamily AL539_17580 PF00580 UvrD/REP helicase N-terminal domain AL539_17675 PF00589 Phage integrase family AL539_17675 PF02899 Phage integrase, N-terminal SAM-like domain AL539_17685 PF02463 RecF/RecN/SMC N terminal domain AL539_17695 PF14815 NUDIX domain AL539_17695 PF00730 HhH-GPD superfamily base excision DNA repair protein AL539_17715 PF00753 Metallo-beta-lactamase superfamily AL539_17715 PF14863 Alkyl sulfatase dimerisation AL539_17715 PF14864 Alkyl sulfatase C-terminal AL539_17725 PF01425 Amidase AL539_17820 PF00589 Phage integrase family AL539_17820 PF02899 Phage integrase, N-terminal SAM-like domain AL539_17830 PF02463 RecF/RecN/SMC N terminal domain AL539_17845 PF04362 Bacterial Fe(2+) trafficking AL539_17850 PF01464 Transglycosylase SLT domain AL539_17850 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL539_17890 PF17200 Single Cache domain 2 AL539_17890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_17890 PF00672 HAMP domain AL539_17925 PF00171 Aldehyde dehydrogenase family AL539_17980 PF04794 YdjC-like protein AL539_17985 PF02056 Family 4 glycosyl hydrolase AL539_17985 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL539_17990 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL539_17995 PF02378 Phosphotransferase system, EIIC AL539_18000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_18005 PF01522 Polysaccharide deacetylase AL539_18020 PF10011 Predicted membrane protein (DUF2254) AL539_18030 PF03739 Lipopolysaccharide export system permease LptF/LptG AL539_18035 PF03739 Lipopolysaccharide export system permease LptF/LptG AL539_18040 PF00883 Cytosol aminopeptidase family, catalytic domain AL539_18040 PF02789 Cytosol aminopeptidase family, N-terminal domain AL539_18045 PF04364 DNA polymerase III chi subunit, HolC AL539_18050 PF08264 Anticodon-binding domain of tRNA AL539_18050 PF00133 tRNA synthetases class I (I, L, M and V) AL539_18050 PF10458 Valyl tRNA synthetase tRNA binding arm AL539_18060 PF00583 Acetyltransferase (GNAT) family AL539_18070 PF06877 Regulator of ribonuclease activity B AL539_18080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL539_18080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL539_18090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL539_18090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL539_18095 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL539_18095 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL539_18100 PF01042 Endoribonuclease L-PSP AL539_18105 PF01553 Acyltransferase AL539_18110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL539_18115 PF01722 BolA-like protein AL539_18125 PF05494 MlaC protein AL539_18130 PF02470 MlaD protein AL539_18135 PF02405 Permease MlaE AL539_18140 PF00005 ABC transporter AL539_18145 PF01699 Sodium/calcium exchanger protein AL539_18150 PF01380 SIS domain AL539_18150 PF00571 CBS domain AL539_18160 PF03968 OstA-like protein AL539_18165 PF00005 ABC transporter AL539_18165 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL539_18170 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL539_18170 PF04963 Sigma-54 factor, core binding domain AL539_18170 PF04552 Sigma-54, DNA binding domain AL539_18175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL539_18180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL539_18185 PF03668 P-loop ATPase protein family AL539_18190 PF00381 PTS HPr component phosphorylation site AL539_18195 PF00571 CBS domain AL539_18195 PF01769 Divalent cation transporter AL539_18195 PF03448 MgtE intracellular N domain AL539_18200 PF01523 Putative modulator of DNA gyrase AL539_18205 PF04751 Protein of unknown function (DUF615) AL539_18210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_18210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL539_18215 PF00849 RNA pseudouridylate synthase AL539_18225 PF18337 RapA N-terminal Tudor like domain AL539_18225 PF18339 RapA N-terminal Tudor like domain 1 AL539_18225 PF00176 SNF2 family N-terminal domain AL539_18225 PF12137 RNA polymerase recycling family C-terminal AL539_18225 PF00271 Helicase conserved C-terminal domain AL539_18230 PF13638 PIN domain AL539_18230 PF02562 PhoH-like protein AL539_18235 PF01523 Putative modulator of DNA gyrase AL539_18240 PF00795 Carbon-nitrogen hydrolase AL539_18245 PF13116 Protein of unknown function AL539_18245 PF13502 AsmA-like C-terminal region AL539_18250 PF10150 Ribonuclease E/G family AL539_18250 PF00575 S1 RNA binding domain AL539_18255 PF02545 Maf-like protein AL539_18260 PF04093 rod shape-determining protein MreD AL539_18265 PF04085 rod shape-determining protein MreC AL539_18280 PF13737 Transposase DDE domain AL539_18290 PF17157 Gammaproteobacterial periplasmic sensor domain AL539_18290 PF00563 EAL domain AL539_18290 PF00990 Diguanylate cyclase, GGDEF domain AL539_18295 PF00436 Single-strand binding protein family AL539_18300 PF00196 Bacterial regulatory proteins, luxR family AL539_18305 PF00483 Nucleotidyl transferase AL539_18310 PF17755 UvrA DNA-binding domain AL539_18310 PF17760 UvrA interaction domain AL539_18310 PF00005 ABC transporter AL539_18320 PF00266 Aminotransferase class-V AL539_18330 PF00696 Amino acid kinase family AL539_18330 PF01842 ACT domain AL539_18335 PF02607 B12 binding domain AL539_18335 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL539_18335 PF00809 Pterin binding enzyme AL539_18335 PF02574 Homocysteine S-methyltransferase AL539_18335 PF02310 B12 binding domain AL539_18340 PF00999 Sodium/hydrogen exchanger family AL539_18400 PF01507 Phosphoadenosine phosphosulfate reductase family AL539_18405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL539_18405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL539_18410 PF00175 Oxidoreductase NAD-binding domain AL539_18410 PF00258 Flavodoxin AL539_18410 PF00667 FAD binding domain AL539_18430 PF01207 Dihydrouridine synthase (Dus) AL539_18435 PF01475 Ferric uptake regulator family AL539_18445 PF00342 Phosphoglucose isomerase AL539_18450 PF01894 Uncharacterised protein family UPF0047 AL539_18455 PF01168 Alanine racemase, N-terminal domain AL539_18455 PF00842 Alanine racemase, C-terminal domain AL539_18460 PF00772 DnaB-like helicase N terminal domain AL539_18460 PF03796 DnaB-like helicase C terminal domain AL539_18470 PF01281 Ribosomal protein L9, N-terminal domain AL539_18470 PF03948 Ribosomal protein L9, C-terminal domain AL539_18475 PF01084 Ribosomal protein S18 AL539_18480 PF00436 Single-strand binding protein family AL539_18485 PF01250 Ribosomal protein S6 AL539_18490 PF00834 Ribulose-phosphate 3 epimerase family AL539_18495 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL539_18505 PF01761 3-dehydroquinate synthase AL539_18510 PF01202 Shikimate kinase AL539_18515 PF11741 AMIN domain AL539_18515 PF03958 Bacterial type II/III secretion system short domain AL539_18515 PF00263 Bacterial type II and III secretion system protein AL539_18515 PF07660 Secretin and TonB N terminus short domain AL539_18540 PF00905 Penicillin binding protein transpeptidase domain AL539_18540 PF00912 Transglycosylase AL539_18540 PF17092 Penicillin-binding protein OB-like domain AL539_18545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_18545 PF03466 LysR substrate binding domain AL539_18550 PF08534 Redoxin AL539_18550 PF00462 Glutaredoxin AL539_18555 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_18555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_18565 PF00206 Lyase AL539_18565 PF00583 Acetyltransferase (GNAT) family AL539_18565 PF14698 Argininosuccinate lyase C-terminal AL539_18570 PF00764 Arginosuccinate synthase AL539_18575 PF00696 Amino acid kinase family AL539_18580 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL539_18580 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL539_18585 PF01546 Peptidase family M20/M25/M40 AL539_18585 PF07687 Peptidase dimerisation domain AL539_18590 PF00311 Phosphoenolpyruvate carboxylase AL539_18600 PF02219 Methylenetetrahydrofolate reductase AL539_18605 PF03447 Homoserine dehydrogenase, NAD binding domain AL539_18605 PF00696 Amino acid kinase family AL539_18605 PF00742 Homoserine dehydrogenase AL539_18610 PF01053 Cys/Met metabolism PLP-dependent enzyme AL539_18620 PF00390 Malic enzyme, N-terminal domain AL539_18620 PF03949 Malic enzyme, NAD binding domain AL539_18625 PF00210 Ferritin-like domain AL539_18630 PF04324 BFD-like [2Fe-2S] binding domain AL539_18635 PF03144 Elongation factor Tu domain 2 AL539_18635 PF00009 Elongation factor Tu GTP binding domain AL539_18635 PF03143 Elongation factor Tu C-terminal domain AL539_18640 PF03144 Elongation factor Tu domain 2 AL539_18640 PF00009 Elongation factor Tu GTP binding domain AL539_18640 PF03764 Elongation factor G, domain IV AL539_18640 PF14492 Elongation Factor G, domain II AL539_18640 PF00679 Elongation factor G C-terminus AL539_18645 PF00177 Ribosomal protein S7p/S5e AL539_18650 PF00164 Ribosomal protein S12/S23 AL539_18655 PF04077 DsrH like protein AL539_18660 PF02635 DsrE/DsrF-like family AL539_18665 PF02635 DsrE/DsrF-like family AL539_18670 PF08348 YheO-like PAS domain AL539_18670 PF13309 HTH domain AL539_18675 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL539_18675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_18685 PF04102 SlyX AL539_18690 PF01112 Asparaginase AL539_18700 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_18710 PF02254 TrkA-N domain AL539_18710 PF00999 Sodium/hydrogen exchanger family AL539_18715 PF02525 Flavodoxin-like fold AL539_18720 PF12848 ABC transporter AL539_18720 PF00005 ABC transporter AL539_18730 PF00561 alpha/beta hydrolase fold AL539_18735 PF06794 Uncharacterised protein family (UPF0270) AL539_18740 PF00485 Phosphoribulokinase / Uridine kinase family AL539_18745 PF13545 Crp-like helix-turn-helix domain AL539_18745 PF00027 Cyclic nucleotide-binding domain AL539_18755 PF00171 Aldehyde dehydrogenase family AL539_18760 PF04958 Arginine N-succinyltransferase beta subunit AL539_18765 PF00202 Aminotransferase class-III AL539_18770 PF00117 Glutamine amidotransferase class-I AL539_18775 PF01047 MarR family AL539_18780 PF00892 EamA-like transporter family AL539_18790 PF07687 Peptidase dimerisation domain AL539_18790 PF01546 Peptidase family M20/M25/M40 AL539_18795 PF03806 AbgT putative transporter family AL539_18800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_18800 PF03466 LysR substrate binding domain AL539_18815 PF00579 tRNA synthetases class I (W and Y) AL539_18820 PF13419 Haloacid dehalogenase-like hydrolase AL539_18825 PF00588 SpoU rRNA Methylase family AL539_18825 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL539_18830 PF00773 RNB domain AL539_18830 PF17876 Cold shock domain AL539_18830 PF08461 Ribonuclease R winged-helix domain AL539_18830 PF08206 Ribonuclease B OB domain AL539_18830 PF00575 S1 RNA binding domain AL539_18835 PF02082 Transcriptional regulator AL539_18840 PF00970 Oxidoreductase FAD-binding domain AL539_18840 PF00042 Globin AL539_18840 PF00175 Oxidoreductase NAD-binding domain AL539_18845 PF08238 Sel1 repeat AL539_18855 PF00709 Adenylosuccinate synthetase AL539_18860 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL539_18865 PF01145 SPFH domain / Band 7 family AL539_18870 PF12221 Bacterial membrane protein N terminal AL539_18870 PF01145 SPFH domain / Band 7 family AL539_18875 PF16360 GTP-binding GTPase Middle Region AL539_18875 PF13167 GTP-binding GTPase N-terminal AL539_18875 PF01926 50S ribosome-binding GTPase AL539_18880 PF17209 Hfq protein AL539_18890 PF08676 MutL C terminal dimerisation domain AL539_18890 PF01119 DNA mismatch repair protein, C-terminal domain AL539_18895 PF01520 N-acetylmuramoyl-L-alanine amidase AL539_18900 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL539_18910 PF08331 Domain of unknown function (DUF1730) AL539_18975 PF00929 Exonuclease AL539_18980 PF03193 RsgA GTPase AL539_18985 PF02666 Phosphatidylserine decarboxylase AL539_18990 PF03600 Citrate transporter AL539_18990 PF02080 TrkA-C domain AL539_19000 PF01676 Metalloenzyme superfamily AL539_19000 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL539_19005 PF00581 Rhodanese-like domain AL539_19010 PF02556 Preprotein translocase subunit SecB AL539_19015 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL539_19015 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL539_19020 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_19020 PF06426 Serine acetyltransferase, N-terminal AL539_19025 PF01551 Peptidase family M23 AL539_19035 PF08360 QacR-like protein, C-terminal region AL539_19035 PF00440 Bacterial regulatory proteins, tetR family AL539_19045 PF00152 tRNA synthetases class II (D, K and N) AL539_19050 PF02910 Fumarate reductase flavoprotein C-term AL539_19050 PF00890 FAD binding domain AL539_19055 PF13183 4Fe-4S dicluster domain AL539_19055 PF13085 2Fe-2S iron-sulfur cluster binding domain AL539_19060 PF02300 Fumarate reductase subunit C AL539_19065 PF02313 Fumarate reductase subunit D AL539_19075 PF01132 Elongation factor P (EF-P) OB domain AL539_19075 PF09285 Elongation factor P, C-terminal AL539_19075 PF08207 Elongation factor P (EF-P) KOW-like domain AL539_19080 PF04055 Radical SAM superfamily AL539_19085 PF02308 MgtC family AL539_19095 PF00118 TCP-1/cpn60 chaperonin family AL539_19100 PF00166 Chaperonin 10 Kd subunit AL539_19105 PF01554 MatE AL539_19110 PF00365 Phosphofructokinase AL539_19115 PF16916 Dimerisation domain of Zinc Transporter AL539_19115 PF01545 Cation efflux family AL539_19120 PF07813 LTXXQ motif family protein AL539_19125 PF00486 Transcriptional regulatory protein, C terminal AL539_19125 PF00072 Response regulator receiver domain AL539_19130 PF00512 His Kinase A (phospho-acceptor) domain AL539_19130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_19130 PF00672 HAMP domain AL539_19130 PF16527 Two-component sensor protein CpxA, periplasmic domain AL539_19135 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL539_19135 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL539_19140 PF00588 SpoU rRNA Methylase family AL539_19145 PF04186 FxsA cytoplasmic membrane protein AL539_19150 PF10415 Fumarase C C-terminus AL539_19150 PF00206 Lyase AL539_19155 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL539_19160 PF11412 Disulphide bond corrector protein DsbC AL539_19160 PF02683 Cytochrome C biogenesis protein transmembrane region AL539_19165 PF00196 Bacterial regulatory proteins, luxR family AL539_19165 PF00072 Response regulator receiver domain AL539_19170 PF02080 TrkA-C domain AL539_19170 PF00999 Sodium/hydrogen exchanger family AL539_19170 PF03471 Transporter associated domain AL539_19180 PF00474 Sodium:solute symporter family AL539_19195 PF10415 Fumarase C C-terminus AL539_19195 PF00206 Lyase AL539_19200 PF00512 His Kinase A (phospho-acceptor) domain AL539_19200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_19200 PF09308 LuxQ, periplasmic AL539_19200 PF00072 Response regulator receiver domain AL539_19205 PF12832 MFS_1 like family AL539_19220 PF13193 AMP-binding enzyme C-terminal domain AL539_19220 PF00501 AMP-binding enzyme AL539_19220 PF16177 Acetyl-coenzyme A synthetase N-terminus AL539_19225 PF01220 Dehydroquinase class II AL539_19230 PF00364 Biotin-requiring enzyme AL539_19235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL539_19235 PF00289 Biotin carboxylase, N-terminal domain AL539_19235 PF02785 Biotin carboxylase C-terminal domain AL539_19250 PF01207 Dihydrouridine synthase (Dus) AL539_19255 PF02954 Bacterial regulatory protein, Fis family AL539_19265 PF12848 ABC transporter AL539_19265 PF00005 ABC transporter AL539_19330 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL539_19330 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL539_19330 PF01276 Orn/Lys/Arg decarboxylase, major domain AL539_19335 PF13520 Amino acid permease AL539_19345 PF18500 CadC C-terminal domain 1 AL539_19345 PF00486 Transcriptional regulatory protein, C terminal AL539_19350 PF13411 MerR HTH family regulatory protein AL539_19360 PF01808 AICARFT/IMPCHase bienzyme AL539_19360 PF02142 MGS-like domain AL539_19365 PF02843 Phosphoribosylglycinamide synthetase, C domain AL539_19365 PF02844 Phosphoribosylglycinamide synthetase, N domain AL539_19365 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL539_19375 PF00216 Bacterial DNA-binding protein AL539_19380 PF00571 CBS domain AL539_19380 PF01595 Cyclin M transmembrane N-terminal domain AL539_19385 PF04222 Protein of unknown function (DUF416) AL539_19390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL539_19395 PF03167 Uracil DNA glycosylase superfamily AL539_19400 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL539_19405 PF09297 NADH pyrophosphatase zinc ribbon domain AL539_19405 PF00293 NUDIX domain AL539_19410 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL539_19415 PF04998 RNA polymerase Rpb1, domain 5 AL539_19415 PF04997 RNA polymerase Rpb1, domain 1 AL539_19415 PF04983 RNA polymerase Rpb1, domain 3 AL539_19415 PF00623 RNA polymerase Rpb1, domain 2 AL539_19415 PF05000 RNA polymerase Rpb1, domain 4 AL539_19420 PF04563 RNA polymerase beta subunit AL539_19420 PF04561 RNA polymerase Rpb2, domain 2 AL539_19420 PF04560 RNA polymerase Rpb2, domain 7 AL539_19420 PF04565 RNA polymerase Rpb2, domain 3 AL539_19420 PF00562 RNA polymerase Rpb2, domain 6 AL539_19420 PF10385 RNA polymerase beta subunit external 1 domain AL539_19425 PF00542 Ribosomal protein L7/L12 C-terminal domain AL539_19425 PF16320 Ribosomal protein L7/L12 dimerisation domain AL539_19430 PF00466 Ribosomal protein L10 AL539_19435 PF00687 Ribosomal protein L1p/L10e family AL539_19440 PF00298 Ribosomal protein L11, RNA binding domain AL539_19440 PF03946 Ribosomal protein L11, N-terminal domain AL539_19445 PF02357 Transcription termination factor nusG AL539_19445 PF00467 KOW motif AL539_19450 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL539_19460 PF03143 Elongation factor Tu C-terminal domain AL539_19460 PF03144 Elongation factor Tu domain 2 AL539_19460 PF00009 Elongation factor Tu GTP binding domain AL539_19485 PF00485 Phosphoribulokinase / Uridine kinase family AL539_19490 PF08279 HTH domain AL539_19490 PF02237 Biotin protein ligase C terminal domain AL539_19490 PF03099 Biotin/lipoate A/B protein ligase family AL539_19495 PF01565 FAD binding domain AL539_19495 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL539_19505 PF13091 PLD-like domain AL539_19575 PF01177 Asp/Glu/Hydantoin racemase AL539_19585 PF07715 TonB-dependent Receptor Plug Domain AL539_19585 PF00593 TonB dependent receptor AL539_19590 PF05958 tRNA (Uracil-5-)-methyltransferase AL539_19600 PF00440 Bacterial regulatory proteins, tetR family AL539_19605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_19605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_19610 PF01554 MatE AL539_19615 PF04072 Leucine carboxyl methyltransferase AL539_19625 PF00717 Peptidase S24-like AL539_19625 PF01726 LexA DNA binding domain AL539_19635 PF01553 Acyltransferase AL539_19640 PF01040 UbiA prenyltransferase family AL539_19645 PF04345 Chorismate lyase AL539_19650 PF03748 Flagellar basal body-associated protein FliL AL539_19655 PF01694 Rhomboid family AL539_19655 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL539_19660 PF00581 Rhodanese-like domain AL539_19670 PF04542 Sigma-70 region 2 AL539_19670 PF04545 Sigma-70, region 4 AL539_19670 PF00140 Sigma-70 factor, region 1.2 AL539_19675 PF18075 FtsX extracellular domain AL539_19680 PF00005 ABC transporter AL539_19685 PF00448 SRP54-type protein, GTPase domain AL539_19685 PF02881 SRP54-type protein, helical bundle domain AL539_19700 PF01914 MarC family integral membrane protein AL539_19725 PF10694 Protein of unknown function (DUF2500) AL539_19745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_19745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL539_19750 PF01022 Bacterial regulatory protein, arsR family AL539_19755 PF08668 HDOD domain AL539_19755 PF00563 EAL domain AL539_19760 PF01810 LysE type translocator AL539_19765 PF12146 Serine aminopeptidase, S33 AL539_19790 PF08495 FIST N domain AL539_19790 PF00990 Diguanylate cyclase, GGDEF domain AL539_19790 PF10442 FIST C domain AL539_19790 PF00563 EAL domain AL539_19795 PF13419 Haloacid dehalogenase-like hydrolase AL539_19800 PF00589 Phage integrase family AL539_19800 PF02899 Phage integrase, N-terminal SAM-like domain AL539_19810 PF01678 Diaminopimelate epimerase AL539_19815 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL539_19815 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL539_19825 PF01491 Frataxin-like domain AL539_19830 PF01295 Adenylate cyclase, class-I AL539_19830 PF12633 Adenylate cyclase NT domain AL539_19835 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL539_19835 PF03900 Porphobilinogen deaminase, C-terminal domain AL539_19840 PF02602 Uroporphyrinogen-III synthase HemD AL539_19845 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL539_19850 PF07219 HemY protein N-terminus AL539_19890 PF00175 Oxidoreductase NAD-binding domain AL539_19895 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_19900 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL539_19910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_19910 PF07498 Rho termination factor, N-terminal domain AL539_19910 PF07497 Rho termination factor, RNA-binding domain AL539_19915 PF00085 Thioredoxin AL539_19920 PF00270 DEAD/DEAH box helicase AL539_19920 PF00271 Helicase conserved C-terminal domain AL539_19925 PF02541 Ppx/GppA phosphatase family AL539_19935 PF02592 Putative vitamin uptake transporter AL539_19945 PF00270 DEAD/DEAH box helicase AL539_19945 PF09382 RQC domain AL539_19945 PF00271 Helicase conserved C-terminal domain AL539_19945 PF00570 HRDC domain AL539_19945 PF16124 RecQ zinc-binding AL539_19950 PF00892 EamA-like transporter family AL539_19960 PF01810 LysE type translocator AL539_19975 PF13361 UvrD-like helicase C-terminal domain AL539_19975 PF00580 UvrD/REP helicase N-terminal domain AL539_19985 PF05114 Protein of unknown function (DUF692) AL539_20005 PF07690 Major Facilitator Superfamily AL539_20010 PF03466 LysR substrate binding domain AL539_20010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_20015 PF00557 Metallopeptidase family M24 AL539_20015 PF00557 Metallopeptidase family M24 AL539_20015 PF01321 Creatinase/Prolidase N-terminal domain AL539_20015 PF01321 Creatinase/Prolidase N-terminal domain AL539_20020 PF06968 Biotin and Thiamin Synthesis associated domain AL539_20020 PF04055 Radical SAM superfamily AL539_20025 PF05690 Thiazole biosynthesis protein ThiG AL539_20030 PF02597 ThiS family AL539_20035 PF00899 ThiF family AL539_20040 PF02581 Thiamine monophosphate synthase AL539_20045 PF01964 Radical SAM ThiC family AL539_20045 PF13667 ThiC-associated domain AL539_20050 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL539_20055 PF07732 Multicopper oxidase AL539_20055 PF07731 Multicopper oxidase AL539_20055 PF00394 Multicopper oxidase AL539_20125 PF13495 Phage integrase, N-terminal SAM-like domain AL539_20125 PF00589 Phage integrase family AL539_20185 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_20190 PF07369 Protein of unknown function (DUF1488) AL539_20195 PF08501 Shikimate dehydrogenase substrate binding domain AL539_20195 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL539_20195 PF01488 Shikimate / quinate 5-dehydrogenase AL539_20200 PF01218 Coproporphyrinogen III oxidase AL539_20205 PF01300 Telomere recombination AL539_20210 PF00731 AIR carboxylase AL539_20215 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL539_20215 PF02222 ATP-grasp domain AL539_20220 PF01396 Topoisomerase DNA binding C4 zinc finger AL539_20225 PF04361 Protein of unknown function (DUF494) AL539_20230 PF17782 DprA winged helix domain AL539_20230 PF02481 DNA recombination-mediator protein A AL539_20240 PF01327 Polypeptide deformylase AL539_20245 PF02911 Formyl transferase, C-terminal domain AL539_20245 PF00551 Formyl transferase AL539_20250 PF01189 16S rRNA methyltransferase RsmB/F AL539_20250 PF01029 NusB family AL539_20255 PF02080 TrkA-C domain AL539_20255 PF02254 TrkA-N domain AL539_20260 PF02386 Cation transport protein AL539_20270 PF03006 Haemolysin-III related AL539_20275 PF07070 SpoOM protein AL539_20285 PF06288 Protein of unknown function (DUF1040) AL539_20290 PF13746 4Fe-4S dicluster domain AL539_20290 PF12801 4Fe-4S binding domain AL539_20290 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL539_20295 PF01636 Phosphotransferase enzyme family AL539_20300 PF01323 DSBA-like thioredoxin domain AL539_20305 PF01553 Acyltransferase AL539_20315 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL539_20315 PF01078 Magnesium chelatase, subunit ChlI AL539_20320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL539_20320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL539_20320 PF00205 Thiamine pyrophosphate enzyme, central domain AL539_20330 PF01063 Amino-transferase class IV AL539_20335 PF00920 Dehydratase family AL539_20340 PF00585 C-terminal regulatory domain of Threonine dehydratase AL539_20340 PF00291 Pyridoxal-phosphate dependent enzyme AL539_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_20345 PF03466 LysR substrate binding domain AL539_20350 PF07690 Major Facilitator Superfamily AL539_20355 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_20360 PF00528 Binding-protein-dependent transport system inner membrane component AL539_20365 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_20365 PF12804 MobA-like NTP transferase domain AL539_20370 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL539_20370 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL539_20375 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL539_20375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_20380 PF00231 ATP synthase AL539_20385 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL539_20385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL539_20385 PF00306 ATP synthase alpha/beta chain, C terminal domain AL539_20390 PF00213 ATP synthase delta (OSCP) subunit AL539_20395 PF00430 ATP synthase B/B' CF(0) AL539_20400 PF00137 ATP synthase subunit C AL539_20405 PF00119 ATP synthase A chain AL539_20410 PF03899 ATP synthase I chain AL539_20415 PF17762 HTH domain found in ParB protein AL539_20415 PF02195 ParB-like nuclease domain AL539_20420 PF13614 AAA domain AL539_20425 PF02527 rRNA small subunit methyltransferase G AL539_20430 PF13932 GidA associated domain AL539_20430 PF01134 Glucose inhibited division protein A AL539_20440 PF00258 Flavodoxin AL539_20445 PF12631 MnmE helical domain AL539_20445 PF01926 50S ribosome-binding GTPase AL539_20445 PF10396 GTP-binding protein TrmE N-terminus AL539_20450 PF14849 YidC periplasmic domain AL539_20450 PF02096 60Kd inner membrane protein AL539_20455 PF01809 Putative membrane protein insertion efficiency factor AL539_20460 PF00825 Ribonuclease P AL539_20465 PF00468 Ribosomal protein L34 AL539_20470 PF00005 ABC transporter AL539_20475 PF00528 Binding-protein-dependent transport system inner membrane component AL539_20480 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_20490 PF11638 DnaA N-terminal domain AL539_20490 PF00308 Bacterial dnaA protein AL539_20490 PF08299 Bacterial dnaA protein helix-turn-helix AL539_20495 PF02768 DNA polymerase III beta subunit, C-terminal domain AL539_20495 PF00712 DNA polymerase III beta subunit, N-terminal domain AL539_20495 PF02767 DNA polymerase III beta subunit, central domain AL539_20500 PF02463 RecF/RecN/SMC N terminal domain AL539_20505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_20505 PF18053 DNA gyrase B subunit insert domain AL539_20505 PF01751 Toprim domain AL539_20505 PF00986 DNA gyrase B subunit, carboxyl terminus AL539_20505 PF00204 DNA gyrase B AL539_20525 PF00011 Hsp20/alpha crystallin family AL539_20530 PF00155 Aminotransferase class I and II AL539_20535 PF00128 Alpha amylase, catalytic domain AL539_20540 PF05746 DALR anticodon binding domain AL539_20540 PF02092 Glycyl-tRNA synthetase beta subunit AL539_20545 PF02091 Glycyl-tRNA synthetase alpha subunit AL539_20550 PF01169 Uncharacterized protein family UPF0016 AL539_20560 PF01206 Sulfurtransferase TusA AL539_20570 PF03466 LysR substrate binding domain AL539_20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_20575 PF00107 Zinc-binding dehydrogenase AL539_20575 PF08240 Alcohol dehydrogenase GroES-like domain AL539_20580 PF00108 Thiolase, N-terminal domain AL539_20580 PF02803 Thiolase, C-terminal domain AL539_20585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL539_20585 PF00378 Enoyl-CoA hydratase/isomerase AL539_20585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL539_20590 PF01205 Uncharacterized protein family UPF0029 AL539_20590 PF09186 Domain of unknown function (DUF1949) AL539_20595 PF02386 Cation transport protein AL539_20600 PF12724 Flavodoxin domain AL539_20640 PF03466 LysR substrate binding domain AL539_20640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_20645 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL539_20645 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL539_20650 PF04380 Membrane fusogenic activity AL539_20655 PF00873 AcrB/AcrD/AcrF family AL539_20660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_20665 PF16295 Tetracyclin repressor-like, C-terminal domain AL539_20665 PF00440 Bacterial regulatory proteins, tetR family AL539_20670 PF00580 UvrD/REP helicase N-terminal domain AL539_20670 PF13361 UvrD-like helicase C-terminal domain AL539_20675 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL539_20705 PF13419 Haloacid dehalogenase-like hydrolase AL539_20715 PF00005 ABC transporter AL539_20715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_20720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_20730 PF00528 Binding-protein-dependent transport system inner membrane component AL539_20730 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_20745 PF00356 Bacterial regulatory proteins, lacI family AL539_20745 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL539_20750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_20750 PF03466 LysR substrate binding domain AL539_20755 PF00893 Small Multidrug Resistance protein AL539_20760 PF00893 Small Multidrug Resistance protein AL539_20765 PF00920 Dehydratase family AL539_20770 PF01202 Shikimate kinase AL539_20775 PF02447 GntP family permease AL539_20780 PF01081 KDPG and KHG aldolase AL539_20785 PF01048 Phosphorylase superfamily AL539_20790 PF03466 LysR substrate binding domain AL539_20790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_20795 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_20795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL539_20800 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL539_20805 PF01432 Peptidase family M3 AL539_20810 PF01037 Lrp/AsnC ligand binding domain AL539_20815 PF00990 Diguanylate cyclase, GGDEF domain AL539_20815 PF08448 PAS fold AL539_20815 PF00563 EAL domain AL539_20820 PF04445 Putative SAM-dependent methyltransferase AL539_20830 PF00892 EamA-like transporter family AL539_20835 PF00582 Universal stress protein family AL539_20840 PF00210 Ferritin-like domain AL539_20845 PF10625 Universal stress protein B (UspB) AL539_20855 PF02954 Bacterial regulatory protein, Fis family AL539_20855 PF00158 Sigma-54 interaction domain AL539_20855 PF01590 GAF domain AL539_20880 PF00781 Diacylglycerol kinase catalytic domain AL539_20910 PF01594 AI-2E family transporter AL539_20915 PF00563 EAL domain AL539_20915 PF00990 Diguanylate cyclase, GGDEF domain AL539_20915 PF03707 Bacterial signalling protein N terminal repeat AL539_20925 PF02646 RmuC family AL539_20930 PF01209 ubiE/COQ5 methyltransferase family AL539_20935 PF02036 SCP-2 sterol transfer family AL539_20940 PF03109 ABC1 family AL539_20945 PF02416 mttA/Hcf106 family AL539_20950 PF02416 mttA/Hcf106 family AL539_20955 PF00902 Sec-independent protein translocase protein (TatC) AL539_20970 PF01026 TatD related DNase AL539_20980 PF00490 Delta-aminolevulinic acid dehydratase AL539_20985 PF00583 Acetyltransferase (GNAT) family AL539_20995 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL539_20995 PF00476 DNA polymerase family A AL539_20995 PF01612 3'-5' exonuclease AL539_20995 PF01367 5'-3' exonuclease, C-terminal SAM fold AL539_21000 PF01926 50S ribosome-binding GTPase AL539_21005 PF00034 Cytochrome c AL539_21020 PF04220 Der GTPase activator (YihI) AL539_21025 PF10675 Protein of unknown function (DUF2489) AL539_21030 PF04055 Radical SAM superfamily AL539_21030 PF06969 HemN C-terminal domain AL539_21035 PF00962 Adenosine/AMP deaminase AL539_21040 PF03707 Bacterial signalling protein N terminal repeat AL539_21040 PF00990 Diguanylate cyclase, GGDEF domain AL539_21040 PF00563 EAL domain AL539_21045 PF00158 Sigma-54 interaction domain AL539_21045 PF02954 Bacterial regulatory protein, Fis family AL539_21045 PF00072 Response regulator receiver domain AL539_21050 PF00512 His Kinase A (phospho-acceptor) domain AL539_21050 PF00989 PAS fold AL539_21050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_21060 PF03951 Glutamine synthetase, beta-Grasp domain AL539_21060 PF00120 Glutamine synthetase, catalytic domain AL539_21070 PF08299 Bacterial dnaA protein helix-turn-helix AL539_21070 PF00308 Bacterial dnaA protein AL539_21080 PF03631 Virulence factor BrkB AL539_21085 PF02580 D-Tyr-tRNA(Tyr) deacylase AL539_21090 PF00583 Acetyltransferase (GNAT) family AL539_21090 PF09500 Putative thioesterase (yiiD_Cterm) AL539_21100 PF01293 Phosphoenolpyruvate carboxykinase AL539_21105 PF01430 Hsp33 protein AL539_21110 PF01479 S4 domain AL539_21115 PF11356 Type II secretion system protein C AL539_21120 PF00263 Bacterial type II and III secretion system protein AL539_21120 PF03958 Bacterial type II/III secretion system short domain AL539_21125 PF00437 Type II/IV secretion system protein AL539_21130 PF00482 Type II secretion system (T2SS), protein F AL539_21135 PF08334 Type II secretion system (T2SS), protein G AL539_21135 PF07963 Prokaryotic N-terminal methylation motif AL539_21140 PF12019 Type II transport protein GspH AL539_21145 PF02501 Type II secretion system (T2SS), protein I AL539_21145 PF07963 Prokaryotic N-terminal methylation motif AL539_21150 PF07963 Prokaryotic N-terminal methylation motif AL539_21150 PF11612 Type II secretion system (T2SS), protein J AL539_21155 PF03934 Type II secretion system (T2SS), protein K AL539_21160 PF05134 Type II secretion system (T2SS), protein L AL539_21160 PF12693 GspL periplasmic domain AL539_21165 PF04612 Type II secretion system (T2SS), protein M AL539_21170 PF01203 Type II secretion system (T2SS), protein N AL539_21175 PF00459 Inositol monophosphatase family AL539_21180 PF00293 NUDIX domain AL539_21185 PF01521 Iron-sulphur cluster biosynthesis AL539_21185 PF01106 NifU-like domain AL539_21190 PF00156 Phosphoribosyl transferase domain AL539_21195 PF00561 alpha/beta hydrolase fold AL539_21205 PF16921 Tex protein YqgF-like domain AL539_21205 PF00575 S1 RNA binding domain AL539_21205 PF17674 HHH domain AL539_21205 PF09371 Tex-like protein N-terminal domain AL539_21215 PF01272 Transcription elongation factor, GreA/GreB, C-term AL539_21215 PF03449 Transcription elongation factor, N-terminal AL539_21225 PF00072 Response regulator receiver domain AL539_21225 PF00486 Transcriptional regulatory protein, C terminal AL539_21230 PF00512 His Kinase A (phospho-acceptor) domain AL539_21230 PF00672 HAMP domain AL539_21230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_21235 PF00860 Permease family AL539_21240 PF00271 Helicase conserved C-terminal domain AL539_21240 PF00270 DEAD/DEAH box helicase AL539_21240 PF17191 RecG wedge domain AL539_21245 PF00588 SpoU rRNA Methylase family AL539_21245 PF12105 SpoU, rRNA methylase, C-terminal AL539_21250 PF13291 ACT domain AL539_21250 PF02824 TGS domain AL539_21250 PF04607 Region found in RelA / SpoT proteins AL539_21255 PF01192 RNA polymerase Rpb6 AL539_21260 PF00625 Guanylate kinase AL539_21280 PF02472 Biopolymer transport protein ExbD/TolR AL539_21285 PF01618 MotA/TolQ/ExbB proton channel family AL539_21300 PF07715 TonB-dependent Receptor Plug Domain AL539_21300 PF00593 TonB dependent receptor AL539_21310 PF00528 Binding-protein-dependent transport system inner membrane component AL539_21315 PF00528 Binding-protein-dependent transport system inner membrane component AL539_21315 PF12911 N-terminal TM domain of oligopeptide transport permease C AL539_21320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL539_21325 PF00005 ABC transporter AL539_21325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_21330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL539_21330 PF00005 ABC transporter AL539_21340 PF08340 Domain of unknown function (DUF1732) AL539_21340 PF03755 YicC-like family, N-terminal region AL539_21350 PF03725 3' exoribonuclease family, domain 2 AL539_21350 PF01138 3' exoribonuclease family, domain 1 AL539_21360 PF03279 Bacterial lipid A biosynthesis acyltransferase AL539_21365 PF00440 Bacterial regulatory proteins, tetR family AL539_21370 PF04127 DNA / pantothenate metabolism flavoprotein AL539_21370 PF02441 Flavoprotein AL539_21380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_21380 PF00672 HAMP domain AL539_21380 PF17200 Single Cache domain 2 AL539_21385 PF04002 RadC-like JAB domain AL539_21390 PF00830 Ribosomal L28 family AL539_21395 PF00471 Ribosomal protein L33 AL539_21405 PF06827 Zinc finger found in FPG and IleRS AL539_21405 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL539_21405 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL539_21420 PF01467 Cytidylyltransferase-like AL539_21425 PF05686 Glycosyl transferase family 90 AL539_21430 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL539_21435 PF13439 Glycosyltransferase Family 4 AL539_21435 PF00534 Glycosyl transferases group 1 AL539_21440 PF01219 Prokaryotic diacylglycerol kinase AL539_21450 PF16363 GDP-mannose 4,6 dehydratase AL539_21455 PF00483 Nucleotidyl transferase AL539_21460 PF04321 RmlD substrate binding domain AL539_21465 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AL539_21470 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL539_21480 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_21490 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL539_21495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL539_21500 PF03279 Bacterial lipid A biosynthesis acyltransferase AL539_21505 PF01370 NAD dependent epimerase/dehydratase family AL539_21510 PF06082 Exopolysaccharide biosynthesis protein YbjH AL539_21545 PF16363 GDP-mannose 4,6 dehydratase AL539_21550 PF00483 Nucleotidyl transferase AL539_21555 PF04321 RmlD substrate binding domain AL539_21560 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AL539_21565 PF01467 Cytidylyltransferase-like AL539_21575 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AL539_21590 PF00535 Glycosyl transferase family 2 AL539_21600 PF02397 Bacterial sugar transferase AL539_21605 PF00132 Bacterial transferase hexapeptide (six repeats) AL539_21610 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL539_21615 PF02719 Polysaccharide biosynthesis protein AL539_21620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL539_21620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL539_21620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL539_21625 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL539_21625 PF10996 Beta-Casp domain AL539_21625 PF00753 Metallo-beta-lactamase superfamily AL539_21635 PF00121 Triosephosphate isomerase AL539_21655 PF00455 DeoR C terminal sensor domain AL539_21655 PF08220 DeoR-like helix-turn-helix domain AL539_21660 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL539_21665 PF06005 Cell division protein ZapB AL539_21670 PF03737 Aldolase/RraA AL539_21675 PF01040 UbiA prenyltransferase family AL539_21705 PF04002 RadC-like JAB domain AL539_21715 PF07724 AAA domain (Cdc48 subfamily) AL539_21715 PF00004 ATPase family associated with various cellular activities (AAA) AL539_21720 PF00227 Proteasome subunit AL539_21730 PF00356 Bacterial regulatory proteins, lacI family AL539_21735 PF00270 DEAD/DEAH box helicase AL539_21735 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL539_21735 PF18074 Primosomal protein N C-terminal domain AL539_21735 PF17764 3′ DNA-binding domain (3′BD) AL539_21735 PF00271 Helicase conserved C-terminal domain AL539_21745 PF01197 Ribosomal protein L31 AL539_21750 PF00338 Ribosomal protein S10p/S20e AL539_21755 PF00297 Ribosomal protein L3 AL539_21760 PF00573 Ribosomal protein L4/L1 family AL539_21765 PF00276 Ribosomal protein L23 AL539_21770 PF00181 Ribosomal Proteins L2, RNA binding domain AL539_21770 PF03947 Ribosomal Proteins L2, C-terminal domain AL539_21775 PF00203 Ribosomal protein S19 AL539_21780 PF00237 Ribosomal protein L22p/L17e AL539_21785 PF00189 Ribosomal protein S3, C-terminal domain AL539_21785 PF07650 KH domain AL539_21790 PF00252 Ribosomal protein L16p/L10e AL539_21795 PF00831 Ribosomal L29 protein AL539_21800 PF00366 Ribosomal protein S17 AL539_21805 PF00238 Ribosomal protein L14p/L23e AL539_21810 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL539_21810 PF00467 KOW motif AL539_21815 PF00673 ribosomal L5P family C-terminus AL539_21815 PF00281 Ribosomal protein L5 AL539_21820 PF00253 Ribosomal protein S14p/S29e AL539_21825 PF00410 Ribosomal protein S8 AL539_21830 PF00347 Ribosomal protein L6 AL539_21835 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL539_21840 PF03719 Ribosomal protein S5, C-terminal domain AL539_21840 PF00333 Ribosomal protein S5, N-terminal domain AL539_21845 PF00327 Ribosomal protein L30p/L7e AL539_21855 PF00344 SecY translocase AL539_21860 PF00444 Ribosomal protein L36 AL539_21865 PF00416 Ribosomal protein S13/S18 AL539_21870 PF00411 Ribosomal protein S11 AL539_21875 PF01479 S4 domain AL539_21875 PF00163 Ribosomal protein S4/S9 N-terminal domain AL539_21880 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL539_21880 PF01000 RNA polymerase Rpb3/RpoA insert domain AL539_21880 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL539_21885 PF01196 Ribosomal protein L17 AL539_21895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_21895 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL539_21905 PF13673 Acetyltransferase (GNAT) domain AL539_21910 PF00270 DEAD/DEAH box helicase AL539_21910 PF03880 DbpA RNA binding domain AL539_21910 PF00271 Helicase conserved C-terminal domain AL539_21920 PF02872 5'-nucleotidase, C-terminal domain AL539_21920 PF00149 Calcineurin-like phosphoesterase AL539_21925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_21925 PF10414 Sirohaem synthase dimerisation region AL539_21925 PF14824 Sirohaem biosynthesis protein central AL539_21930 PF01507 Phosphoadenosine phosphosulfate reductase family AL539_21935 PF00009 Elongation factor Tu GTP binding domain AL539_21940 PF03600 Citrate transporter AL539_21940 PF02080 TrkA-C domain AL539_21965 PF00005 ABC transporter AL539_21975 PF10795 Protein of unknown function (DUF2607) AL539_21980 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL539_21985 PF06526 Protein of unknown function (DUF1107) AL539_21990 PF01625 Peptide methionine sulfoxide reductase AL539_21995 PF07244 Surface antigen variable number repeat AL539_21995 PF17243 POTRA domain TamA domain 1 AL539_21995 PF01103 Surface antigen AL539_22000 PF04357 TamB, inner membrane protein subunit of TAM complex AL539_22005 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL539_22015 PF13737 Transposase DDE domain AL539_22025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_22045 PF00672 HAMP domain AL539_22045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_22045 PF12729 Four helix bundle sensory module for signal transduction AL539_22060 PF00719 Inorganic pyrophosphatase AL539_22065 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL539_22075 PF01225 Mur ligase family, catalytic domain AL539_22075 PF08245 Mur ligase middle domain AL539_22075 PF02875 Mur ligase family, glutamate ligase domain AL539_22080 PF02441 Flavoprotein AL539_22090 PF00528 Binding-protein-dependent transport system inner membrane component AL539_22095 PF00005 ABC transporter AL539_22100 PF03466 LysR substrate binding domain AL539_22100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_22105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL539_22125 PF16868 NMT1-like family AL539_22135 PF02863 Arginine repressor, C-terminal domain AL539_22135 PF01316 Arginine repressor, DNA binding domain AL539_22140 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL539_22140 PF00056 lactate/malate dehydrogenase, NAD binding domain AL539_22150 PF00348 Polyprenyl synthetase AL539_22155 PF00829 Ribosomal prokaryotic L21 protein AL539_22160 PF01016 Ribosomal L27 protein AL539_22165 PF01018 GTP1/OBG AL539_22165 PF01926 50S ribosome-binding GTPase AL539_22170 PF06738 Putative threonine/serine exporter AL539_22175 PF12821 Threonine/Serine exporter, ThrE AL539_22180 PF00186 Dihydrofolate reductase AL539_22185 PF00149 Calcineurin-like phosphoesterase AL539_22190 PF04379 ApaG domain AL539_22195 PF00398 Ribosomal RNA adenine dimethylase AL539_22200 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL539_22205 PF09312 SurA N-terminal domain AL539_22210 PF03968 OstA-like protein AL539_22210 PF04453 LPS transport system D AL539_22215 PF05099 Tellurite resistance protein TerB AL539_22215 PF00226 DnaJ domain AL539_22225 PF00694 Aconitase C-terminal domain AL539_22230 PF00330 Aconitase family (aconitate hydratase) AL539_22235 PF00180 Isocitrate/isopropylmalate dehydrogenase AL539_22240 PF08502 LeuA allosteric (dimerisation) domain AL539_22240 PF00682 HMGL-like AL539_22255 PF01569 PAP2 superfamily AL539_22265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_22265 PF03466 LysR substrate binding domain AL539_22270 PF00501 AMP-binding enzyme AL539_22275 PF00205 Thiamine pyrophosphate enzyme, central domain AL539_22275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL539_22275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL539_22280 PF10369 Small subunit of acetolactate synthase AL539_22285 PF07694 5TMR of 5TMR-LYT AL539_22285 PF00990 Diguanylate cyclase, GGDEF domain AL539_22295 PF02887 Pyruvate kinase, alpha/beta domain AL539_22295 PF00224 Pyruvate kinase, barrel domain AL539_22300 PF00455 DeoR C terminal sensor domain AL539_22300 PF08220 DeoR-like helix-turn-helix domain AL539_22305 PF01380 SIS domain AL539_22310 PF08721 TnsA endonuclease C terminal AL539_22310 PF08722 TnsA endonuclease N terminal AL539_22315 PF00665 Integrase core domain AL539_22320 PF13401 AAA domain AL539_22320 PF11426 Tn7 transposition regulator TnsC AL539_22325 PF06527 TniQ AL539_22325 PF15978 Tn7-like transposition protein D AL539_22335 PF02384 N-6 DNA Methylase AL539_22335 PF12161 HsdM N-terminal domain AL539_22340 PF01420 Type I restriction modification DNA specificity domain AL539_22345 PF08463 EcoEI R protein C-terminal AL539_22345 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_22345 PF04851 Type III restriction enzyme, res subunit AL539_22345 PF00271 Helicase conserved C-terminal domain AL539_22360 PF00465 Iron-containing alcohol dehydrogenase AL539_22365 PF02733 Dak1 domain AL539_22370 PF02734 DAK2 domain AL539_22375 PF05524 PEP-utilising enzyme, N-terminal AL539_22375 PF02896 PEP-utilising enzyme, TIM barrel domain AL539_22375 PF00391 PEP-utilising enzyme, mobile domain AL539_22380 PF00158 Sigma-54 interaction domain AL539_22380 PF00989 PAS fold AL539_22380 PF02954 Bacterial regulatory protein, Fis family AL539_22385 PF05068 Mannitol repressor AL539_22390 PF08125 Mannitol dehydrogenase C-terminal domain AL539_22390 PF01232 Mannitol dehydrogenase Rossmann domain AL539_22395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL539_22395 PF02378 Phosphotransferase system, EIIC AL539_22395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL539_22415 PF03180 NLPA lipoprotein AL539_22435 PF00313 'Cold-shock' DNA-binding domain AL539_22450 PF00313 'Cold-shock' DNA-binding domain AL539_22460 PF07804 HipA-like C-terminal domain AL539_22460 PF13657 HipA N-terminal domain AL539_22490 PF00580 UvrD/REP helicase N-terminal domain AL539_22490 PF13361 UvrD-like helicase C-terminal domain AL539_22510 PF07804 HipA-like C-terminal domain AL539_22510 PF13657 HipA N-terminal domain AL539_22525 PF00140 Sigma-70 factor, region 1.2 AL539_22525 PF04539 Sigma-70 region 3 AL539_22525 PF03979 Sigma-70 factor, region 1.1 AL539_22525 PF04546 Sigma-70, non-essential region AL539_22525 PF04545 Sigma-70, region 4 AL539_22525 PF04542 Sigma-70 region 2 AL539_22530 PF10410 DnaB-helicase binding domain of primase AL539_22530 PF01807 CHC2 zinc finger AL539_22530 PF08275 DNA primase catalytic core, N-terminal domain AL539_22530 PF08278 DNA primase DnaG DnaB-binding AL539_22535 PF09424 Yqey-like protein AL539_22540 PF01165 Ribosomal protein S21 AL539_22545 PF00814 Glycoprotease family AL539_22550 PF00561 alpha/beta hydrolase fold AL539_22555 PF02660 Glycerol-3-phosphate acyltransferase AL539_22560 PF02152 Dihydroneopterin aldolase AL539_22565 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL539_22570 PF02673 Bacitracin resistance protein BacA AL539_22575 PF01966 HD domain AL539_22575 PF01743 Poly A polymerase head domain AL539_22575 PF12627 Probable RNA and SrmB- binding site of polymerase A AL539_22580 PF13401 AAA domain AL539_22580 PF01471 Putative peptidoglycan binding domain AL539_22595 PF08239 Bacterial SH3 domain AL539_22600 PF01384 Phosphate transporter family AL539_22605 PF01865 Protein of unknown function DUF47 AL539_22610 PF01928 CYTH domain AL539_22620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_22620 PF02743 Cache domain AL539_22620 PF00672 HAMP domain AL539_22625 PF03710 Glutamate-ammonia ligase adenylyltransferase AL539_22625 PF08335 GlnD PII-uridylyltransferase AL539_22630 PF00294 pfkB family carbohydrate kinase AL539_22630 PF01467 Cytidylyltransferase-like AL539_22635 PF02321 Outer membrane efflux protein AL539_22640 PF00293 NUDIX domain AL539_22645 PF06853 Protein of unknown function (DUF1249) AL539_22650 PF00149 Calcineurin-like phosphoesterase AL539_22655 PF05728 Uncharacterised protein family (UPF0227) AL539_22660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_22660 PF00986 DNA gyrase B subunit, carboxyl terminus AL539_22660 PF00204 DNA gyrase B AL539_22660 PF01751 Toprim domain AL539_22665 PF00521 DNA gyrase/topoisomerase IV, subunit A AL539_22665 PF03989 DNA gyrase C-terminal domain, beta-propeller AL539_22670 PF13180 PDZ domain AL539_22675 PF00595 PDZ domain AL539_22680 PF06295 Protein of unknown function (DUF1043) AL539_22690 PF03969 AFG1-like ATPase AL539_22700 PF00572 Ribosomal protein L13 AL539_22705 PF00380 Ribosomal protein S9/S16 AL539_22710 PF00355 Rieske [2Fe-2S] domain AL539_22710 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL539_22715 PF00032 Cytochrome b(C-terminal)/b6/petD AL539_22715 PF00033 Cytochrome b/b6/petB AL539_22720 PF02167 Cytochrome C1 family AL539_22725 PF02798 Glutathione S-transferase, N-terminal domain AL539_22725 PF00043 Glutathione S-transferase, C-terminal domain AL539_22730 PF04386 Stringent starvation protein B AL539_22735 PF04972 BON domain AL539_22740 PF13580 SIS domain AL539_22745 PF02021 Uncharacterised protein family UPF0102 AL539_22750 PF04348 LppC putative lipoprotein AL539_22755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL539_22770 PF01795 MraW methylase family AL539_22775 PF04999 Cell division protein FtsL AL539_22780 PF00905 Penicillin binding protein transpeptidase domain AL539_22780 PF03717 Penicillin-binding Protein dimerisation domain AL539_22785 PF08245 Mur ligase middle domain AL539_22785 PF02875 Mur ligase family, glutamate ligase domain AL539_22785 PF01225 Mur ligase family, catalytic domain AL539_22790 PF01225 Mur ligase family, catalytic domain AL539_22790 PF02875 Mur ligase family, glutamate ligase domain AL539_22790 PF08245 Mur ligase middle domain AL539_22795 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL539_22795 PF00953 Glycosyl transferase family 4 AL539_22800 PF02875 Mur ligase family, glutamate ligase domain AL539_22800 PF08245 Mur ligase middle domain AL539_22805 PF01098 Cell cycle protein AL539_22810 PF03033 Glycosyltransferase family 28 N-terminal domain AL539_22810 PF04101 Glycosyltransferase family 28 C-terminal domain AL539_22815 PF08245 Mur ligase middle domain AL539_22815 PF01225 Mur ligase family, catalytic domain AL539_22815 PF02875 Mur ligase family, glutamate ligase domain AL539_22820 PF08478 POTRA domain, FtsQ-type AL539_22820 PF03799 Cell division protein FtsQ AL539_22825 PF02491 SHS2 domain inserted in FTSA AL539_22830 PF00091 Tubulin/FtsZ family, GTPase domain AL539_22830 PF12327 FtsZ family, C-terminal domain AL539_22835 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL539_22845 PF01043 SecA preprotein cross-linking domain AL539_22845 PF07517 SecA DEAD-like domain AL539_22845 PF07516 SecA Wing and Scaffold domain AL539_22845 PF02810 SEC-C motif AL539_22850 PF00293 NUDIX domain AL539_22855 PF05173 Dihydrodipicolinate reductase, C-terminus AL539_22855 PF01113 Dihydrodipicolinate reductase, N-terminus AL539_22860 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL539_22860 PF00117 Glutamine amidotransferase class-I AL539_22865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL539_22865 PF02142 MGS-like domain AL539_22865 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL539_22880 PF01925 Sulfite exporter TauE/SafE AL539_22885 PF03466 LysR substrate binding domain AL539_22885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_22890 PF03458 UPF0126 domain AL539_22895 PF01497 Periplasmic binding protein AL539_22900 PF17113 Regulatory signalling modulator protein AmpE AL539_22900 PF03186 CobD/Cbib protein AL539_22905 PF01048 Phosphorylase superfamily AL539_22915 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_22915 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL539_22920 PF01645 Conserved region in glutamate synthase AL539_22920 PF04898 Glutamate synthase central domain AL539_22920 PF00310 Glutamine amidotransferases class-II AL539_22920 PF01493 GXGXG motif AL539_22925 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_22925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL539_22930 PF04898 Glutamate synthase central domain AL539_22930 PF00310 Glutamine amidotransferases class-II AL539_22930 PF01645 Conserved region in glutamate synthase AL539_22930 PF01493 GXGXG motif AL539_22935 PF04055 Radical SAM superfamily AL539_22935 PF16199 Radical_SAM C-terminal domain AL539_22940 PF00360 Phytochrome region AL539_22940 PF00990 Diguanylate cyclase, GGDEF domain AL539_22940 PF01590 GAF domain AL539_22940 PF00563 EAL domain AL539_22945 PF00072 Response regulator receiver domain AL539_22945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_22945 PF00989 PAS fold AL539_22945 PF01627 Hpt domain AL539_22945 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL539_22945 PF00512 His Kinase A (phospho-acceptor) domain AL539_22955 PF00486 Transcriptional regulatory protein, C terminal AL539_22955 PF00072 Response regulator receiver domain AL539_22970 PF03737 Aldolase/RraA AL539_22985 PF00696 Amino acid kinase family AL539_22985 PF01842 ACT domain AL539_22985 PF13840 ACT domain AL539_22985 PF00742 Homoserine dehydrogenase AL539_22985 PF03447 Homoserine dehydrogenase, NAD binding domain AL539_22990 PF00288 GHMP kinases N terminal domain AL539_22990 PF08544 GHMP kinases C terminal AL539_22995 PF00291 Pyridoxal-phosphate dependent enzyme AL539_22995 PF14821 Threonine synthase N terminus AL539_23005 PF01228 Glycine radical AL539_23010 PF01261 Xylose isomerase-like TIM barrel AL539_23020 PF03167 Uracil DNA glycosylase superfamily AL539_23035 PF01235 Sodium:alanine symporter family AL539_23040 PF03883 Peroxide stress protein YaaA AL539_23045 PF00270 DEAD/DEAH box helicase AL539_23045 PF00271 Helicase conserved C-terminal domain AL539_23050 PF05175 Methyltransferase small domain AL539_23055 PF05525 Branched-chain amino acid transport protein AL539_23060 PF00258 Flavodoxin AL539_23065 PF02899 Phage integrase, N-terminal SAM-like domain AL539_23065 PF00589 Phage integrase family AL539_23070 PF13098 Thioredoxin-like domain AL539_23070 PF10411 Disulfide bond isomerase protein N-terminus AL539_23075 PF17768 RecJ OB domain AL539_23075 PF02272 DHHA1 domain AL539_23075 PF01368 DHH family AL539_23085 PF00152 tRNA synthetases class II (D, K and N) AL539_23085 PF01336 OB-fold nucleic acid binding domain AL539_23090 PF00072 Response regulator receiver domain AL539_23090 PF00158 Sigma-54 interaction domain AL539_23090 PF02954 Bacterial regulatory protein, Fis family AL539_23100 PF00248 Aldo/keto reductase family AL539_23110 PF02976 DNA mismatch repair enzyme MutH AL539_23115 PF00293 NUDIX domain AL539_23120 PF00391 PEP-utilising enzyme, mobile domain AL539_23120 PF02896 PEP-utilising enzyme, TIM barrel domain AL539_23120 PF01590 GAF domain AL539_23120 PF05524 PEP-utilising enzyme, N-terminal AL539_23125 PF01925 Sulfite exporter TauE/SafE AL539_23135 PF00303 Thymidylate synthase AL539_23145 PF02690 Na+/Pi-cotransporter AL539_23150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_23150 PF03466 LysR substrate binding domain AL539_23155 PF01022 Bacterial regulatory protein, arsR family AL539_23160 PF01649 Ribosomal protein S20 AL539_23165 PF03023 Lipid II flippase MurJ AL539_23170 PF01687 Riboflavin kinase AL539_23170 PF06574 FAD synthetase AL539_23175 PF08264 Anticodon-binding domain of tRNA AL539_23175 PF06827 Zinc finger found in FPG and IleRS AL539_23175 PF00133 tRNA synthetases class I (I, L, M and V) AL539_23180 PF01252 Signal peptidase (SPase) II AL539_23185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_23190 PF02401 LytB protein AL539_23200 PF04397 LytTr DNA-binding domain AL539_23200 PF00072 Response regulator receiver domain AL539_23205 PF07694 5TMR of 5TMR-LYT AL539_23205 PF06580 Histidine kinase AL539_23210 PF02554 Carbon starvation protein CstA AL539_23225 PF01380 SIS domain AL539_23230 PF03702 Anhydro-N-acetylmuramic acid kinase AL539_23235 PF00933 Glycosyl hydrolase family 3 N terminal domain AL539_23240 PF00793 DAHP synthetase I family AL539_23245 PF01817 Chorismate mutase type II AL539_23245 PF02153 Prephenate dehydrogenase AL539_23250 PF01551 Peptidase family M23 AL539_23250 PF04225 Opacity-associated protein A LysM-like domain AL539_23255 PF07238 PilZ domain AL539_23260 PF12848 ABC transporter AL539_23260 PF00005 ABC transporter AL539_23265 PF01464 Transglycosylase SLT domain AL539_23265 PF14718 Soluble lytic murein transglycosylase L domain AL539_23270 PF01371 Trp repressor protein AL539_23275 PF01931 Protein of unknown function DUF84 AL539_23280 PF00800 Prephenate dehydratase AL539_23280 PF01817 Chorismate mutase type II AL539_23285 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL539_23290 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_23290 PF01464 Transglycosylase SLT domain AL539_23295 PF13525 Outer membrane lipoprotein AL539_23300 PF01479 S4 domain AL539_23300 PF00849 RNA pseudouridylate synthase AL539_23310 PF07724 AAA domain (Cdc48 subfamily) AL539_23310 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_23310 PF02861 Clp amino terminal domain, pathogenicity island component AL539_23310 PF17871 AAA lid domain AL539_23310 PF00004 ATPase family associated with various cellular activities (AAA) AL539_23360 PF03411 Penicillin-insensitive murein endopeptidase AL539_23375 PF00037 4Fe-4S binding domain AL539_23385 PF04381 Putative exonuclease, RdgC AL539_23395 PF00072 Response regulator receiver domain AL539_23395 PF00486 Transcriptional regulatory protein, C terminal AL539_23400 PF11808 Phosphate regulon sensor protein PhoR AL539_23400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_23400 PF00989 PAS fold AL539_23400 PF00512 His Kinase A (phospho-acceptor) domain AL539_23405 PF12849 PBP superfamily domain AL539_23410 PF02541 Ppx/GppA phosphatase family AL539_23415 PF13089 Polyphosphate kinase N-terminal domain AL539_23415 PF17941 Polyphosphate kinase C-terminal domain 1 AL539_23415 PF13090 Polyphosphate kinase C-terminal domain 2 AL539_23415 PF02503 Polyphosphate kinase middle domain AL539_23420 PF00528 Binding-protein-dependent transport system inner membrane component AL539_23425 PF00528 Binding-protein-dependent transport system inner membrane component AL539_23430 PF00005 ABC transporter AL539_23435 PF01895 PhoU domain AL539_23440 PF03976 Polyphosphate kinase 2 (PPK2) AL539_23445 PF03932 CutC family AL539_23450 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL539_23450 PF00578 AhpC/TSA family AL539_23455 PF03466 LysR substrate binding domain AL539_23455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_23460 PF01274 Malate synthase AL539_23465 PF00463 Isocitrate lyase family AL539_23470 PF00571 CBS domain AL539_23480 PF02547 Queuosine biosynthesis protein AL539_23485 PF01702 Queuine tRNA-ribosyltransferase AL539_23490 PF02699 Preprotein translocase subunit AL539_23495 PF13721 SecD export protein N-terminal TM region AL539_23495 PF07549 SecD/SecF GG Motif AL539_23495 PF02355 Protein export membrane protein AL539_23500 PF07549 SecD/SecF GG Motif AL539_23500 PF02355 Protein export membrane protein AL539_23515 PF00459 Inositol monophosphatase family AL539_23520 PF00588 SpoU rRNA Methylase family AL539_23525 PF02082 Transcriptional regulator AL539_23530 PF00266 Aminotransferase class-V AL539_23535 PF01592 NifU-like N terminal domain AL539_23540 PF01521 Iron-sulphur cluster biosynthesis AL539_23545 PF00226 DnaJ domain AL539_23545 PF07743 HSCB C-terminal oligomerisation domain AL539_23550 PF00012 Hsp70 protein AL539_23555 PF00111 2Fe-2S iron-sulfur cluster binding domain AL539_23560 PF04384 Iron-sulphur cluster assembly AL539_23565 PF12404 Peptidase AL539_23565 PF00883 Cytosol aminopeptidase family, catalytic domain AL539_23570 PF00334 Nucleoside diphosphate kinase AL539_23575 PF04055 Radical SAM superfamily AL539_23580 PF13464 Domain of unknown function (DUF4115) AL539_23585 PF04551 GcpE protein AL539_23590 PF13393 Histidyl-tRNA synthetase AL539_23590 PF03129 Anticodon binding domain AL539_23595 PF09976 Tetratricopeptide repeat-like domain AL539_23600 PF13360 PQQ-like domain AL539_23605 PF01926 50S ribosome-binding GTPase AL539_23605 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL539_23620 PF13742 OB-fold nucleic acid binding domain AL539_23620 PF02601 Exonuclease VII, large subunit AL539_23625 PF00478 IMP dehydrogenase / GMP reductase domain AL539_23625 PF00571 CBS domain AL539_23630 PF00958 GMP synthase C terminal domain AL539_23630 PF00117 Glutamine amidotransferase class-I AL539_23630 PF02540 NAD synthase AL539_23635 PF03553 Na+/H+ antiporter family AL539_23640 PF06483 Chitinase C AL539_23640 PF00704 Glycosyl hydrolases family 18 AL539_23645 PF01184 GPR1/FUN34/yaaH family AL539_23650 PF01235 Sodium:alanine symporter family AL539_23655 PF01266 FAD dependent oxidoreductase AL539_23665 PF01053 Cys/Met metabolism PLP-dependent enzyme AL539_23670 PF00202 Aminotransferase class-III AL539_23690 PF00583 Acetyltransferase (GNAT) family AL539_23690 PF00795 Carbon-nitrogen hydrolase AL539_23695 PF03466 LysR substrate binding domain AL539_23695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_23740 PF08495 FIST N domain AL539_23740 PF00563 EAL domain AL539_23740 PF10442 FIST C domain AL539_23740 PF00990 Diguanylate cyclase, GGDEF domain AL539_23745 PF13188 PAS domain AL539_23745 PF03707 Bacterial signalling protein N terminal repeat AL539_23745 PF00563 EAL domain AL539_23745 PF00990 Diguanylate cyclase, GGDEF domain AL539_23750 PF12833 Helix-turn-helix domain AL539_23765 PF13333 Integrase core domain AL539_23765 PF13276 HTH-like domain AL539_23765 PF00665 Integrase core domain AL539_23770 PF13276 HTH-like domain AL539_23770 PF00665 Integrase core domain AL539_23770 PF13333 Integrase core domain AL539_23775 PF00990 Diguanylate cyclase, GGDEF domain AL539_23775 PF07694 5TMR of 5TMR-LYT AL539_23795 PF02899 Phage integrase, N-terminal SAM-like domain AL539_23795 PF00589 Phage integrase family AL539_23815 PF13657 HipA N-terminal domain AL539_23815 PF07804 HipA-like C-terminal domain AL539_23835 PF13737 Transposase DDE domain AL539_23875 PF02796 Helix-turn-helix domain of resolvase AL539_23875 PF00239 Resolvase, N terminal domain AL539_23885 PF18766 SWI2/SNF2 ATPase AL539_23885 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL539_23885 PF11867 Domain of unknown function (DUF3387) AL539_23890 PF01420 Type I restriction modification DNA specificity domain AL539_23895 PF02384 N-6 DNA Methylase AL539_23895 PF12161 HsdM N-terminal domain AL539_23930 PF00589 Phage integrase family AL539_23930 PF13356 Arm DNA-binding domain AL539_23940 PF01668 SmpB protein AL539_23945 PF03364 Polyketide cyclase / dehydrase and lipid transport AL539_23950 PF03658 RnfH family Ubiquitin AL539_23955 PF04355 SmpA / OmlA family AL539_23965 PF02463 RecF/RecN/SMC N terminal domain AL539_23975 PF01513 ATP-NAD kinase AL539_23980 PF01025 GrpE AL539_23985 PF00375 Sodium:dicarboxylate symporter family AL539_23990 PF00012 Hsp70 protein AL539_23995 PF01556 DnaJ C terminal domain AL539_23995 PF00226 DnaJ domain AL539_23995 PF00684 DnaJ central domain AL539_24000 PF07963 Prokaryotic N-terminal methylation motif AL539_24000 PF00114 Pilin (bacterial filament) AL539_24005 PF00114 Pilin (bacterial filament) AL539_24005 PF07963 Prokaryotic N-terminal methylation motif AL539_24025 PF03806 AbgT putative transporter family AL539_24030 PF14437 MafB19-like deaminase AL539_24040 PF01464 Transglycosylase SLT domain AL539_24040 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_24045 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL539_24045 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL539_24045 PF02769 AIR synthase related protein, C-terminal domain AL539_24060 PF00593 TonB dependent receptor AL539_24060 PF07715 TonB-dependent Receptor Plug Domain AL539_24075 PF01546 Peptidase family M20/M25/M40 AL539_24075 PF07687 Peptidase dimerisation domain AL539_24080 PF00860 Permease family AL539_24085 PF00156 Phosphoribosyl transferase domain AL539_24095 PF07417 Sigma factor-binding transcriptional regulator Crl AL539_24100 PF01472 PUA domain AL539_24100 PF00696 Amino acid kinase family AL539_24105 PF00171 Aldehyde dehydrogenase family AL539_24110 PF03477 ATP cone domain AL539_24115 PF01872 RibD C-terminal domain AL539_24115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL539_24120 PF00677 Lumazine binding domain AL539_24125 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL539_24125 PF00925 GTP cyclohydrolase II AL539_24130 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL539_24135 PF01029 NusB family AL539_24140 PF02769 AIR synthase related protein, C-terminal domain AL539_24140 PF00586 AIR synthase related protein, N-terminal domain AL539_24145 PF04608 Phosphatidylglycerophosphatase A AL539_24150 PF02779 Transketolase, pyrimidine binding domain AL539_24150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL539_24150 PF02780 Transketolase, C-terminal domain AL539_24155 PF00348 Polyprenyl synthetase AL539_24160 PF02609 Exonuclease VII small subunit AL539_24165 PF01618 MotA/TolQ/ExbB proton channel family AL539_24170 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL539_24170 PF00691 OmpA family AL539_24175 PF02926 THUMP domain AL539_24175 PF02568 Thiamine biosynthesis protein (ThiI) AL539_24180 PF03466 LysR substrate binding domain AL539_24180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_24190 PF04241 Protein of unknown function (DUF423) AL539_24195 PF18125 RlmM ferredoxin-like domain AL539_24195 PF01728 FtsJ-like methyltransferase AL539_24200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL539_24200 PF01367 5'-3' exonuclease, C-terminal SAM fold AL539_24205 PF11892 Domain of unknown function (DUF3412) AL539_24205 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL539_24205 PF03641 Possible lysine decarboxylase AL539_24210 PF00072 Response regulator receiver domain AL539_24210 PF00990 Diguanylate cyclase, GGDEF domain AL539_24220 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL539_24220 PF14489 QueF-like protein AL539_24225 PF07348 Syd protein (SUKH-2) AL539_24230 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL539_24235 PF03180 NLPA lipoprotein AL539_24240 PF00528 Binding-protein-dependent transport system inner membrane component AL539_24245 PF00005 ABC transporter AL539_24245 PF09383 NIL domain AL539_24255 PF00356 Bacterial regulatory proteins, lacI family AL539_24260 PF00367 phosphotransferase system, EIIB AL539_24260 PF02378 Phosphotransferase system, EIIC AL539_24265 PF00128 Alpha amylase, catalytic domain AL539_24265 PF16657 Maltogenic Amylase, C-terminal domain AL539_24280 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AL539_24280 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL539_24285 PF00464 Serine hydroxymethyltransferase AL539_24290 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL539_24290 PF04055 Radical SAM superfamily AL539_24295 PF03099 Biotin/lipoate A/B protein ligase family AL539_24300 PF04359 Protein of unknown function (DUF493) AL539_24305 PF00768 D-alanyl-D-alanine carboxypeptidase AL539_24305 PF07943 Penicillin-binding protein 5, C-terminal domain AL539_24310 PF03330 Lytic transglycolase AL539_24310 PF05036 Sporulation related domain AL539_24315 PF01098 Cell cycle protein AL539_24320 PF00905 Penicillin binding protein transpeptidase domain AL539_24320 PF03717 Penicillin-binding Protein dimerisation domain AL539_24325 PF02590 Predicted SPOUT methyltransferase AL539_24335 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL539_24335 PF06144 DNA polymerase III, delta subunit AL539_24340 PF04390 Lipopolysaccharide-assembly AL539_24345 PF13603 Leucyl-tRNA synthetase, Domain 2 AL539_24345 PF08264 Anticodon-binding domain of tRNA AL539_24345 PF00133 tRNA synthetases class I (I, L, M and V) AL539_24350 PF07295 Zinc-ribbon containing domain AL539_24355 PF00795 Carbon-nitrogen hydrolase AL539_24360 PF00571 CBS domain AL539_24360 PF03471 Transporter associated domain AL539_24365 PF02130 Uncharacterized protein family UPF0054 AL539_24370 PF02562 PhoH-like protein AL539_24375 PF01938 TRAM domain AL539_24375 PF00919 Uncharacterized protein family UPF0004 AL539_24375 PF04055 Radical SAM superfamily AL539_24385 PF01494 FAD binding domain AL539_24495 PF01926 50S ribosome-binding GTPase AL539_24495 PF06071 Protein of unknown function (DUF933) AL539_24500 PF01195 Peptidyl-tRNA hydrolase AL539_24505 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL539_24505 PF14572 Phosphoribosyl synthetase-associated domain AL539_24510 PF00288 GHMP kinases N terminal domain AL539_24510 PF08544 GHMP kinases C terminal AL539_24515 PF03550 Outer membrane lipoprotein LolB AL539_24520 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL539_24520 PF01488 Shikimate / quinate 5-dehydrogenase AL539_24520 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL539_24525 PF03462 PCRF domain AL539_24525 PF00472 RF-1 domain AL539_24530 PF13847 Methyltransferase domain AL539_24530 PF17827 PrmC N-terminal domain AL539_24535 PF04247 Invasion gene expression up-regulator, SirB AL539_24540 PF13369 Transglutaminase-like superfamily AL539_24545 PF00793 DAHP synthetase I family AL539_24550 PF00149 Calcineurin-like phosphoesterase AL539_24550 PF02872 5'-nucleotidase, C-terminal domain AL539_24555 PF04073 Aminoacyl-tRNA editing domain AL539_24560 PF01479 S4 domain AL539_24560 PF00849 RNA pseudouridylate synthase AL539_24565 PF01713 Smr domain AL539_24590 PF03173 Putative carbohydrate binding domain AL539_24590 PF02838 Glycosyl hydrolase family 20, domain 2 AL539_24590 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL539_24590 PF00728 Glycosyl hydrolase family 20, catalytic domain AL539_24605 PF00403 Heavy-metal-associated domain AL539_24615 PF13609 Gram-negative porin AL539_24620 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL539_24625 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL539_24630 PF00691 OmpA family AL539_24630 PF01389 OmpA-like transmembrane domain AL539_24675 PF01584 CheW-like domain AL539_24675 PF00072 Response regulator receiver domain AL539_24680 PF01739 CheR methyltransferase, SAM binding domain AL539_24680 PF03705 CheR methyltransferase, all-alpha domain AL539_24685 PF00460 Flagella basal body rod protein AL539_24690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_24690 PF00460 Flagella basal body rod protein AL539_24695 PF13861 FlgD Tudor-like domain AL539_24695 PF13860 FlgD Ig-like domain AL539_24695 PF03963 Flagellar hook capping protein - N-terminal region AL539_24700 PF00460 Flagella basal body rod protein AL539_24700 PF07559 Flagellar basal body protein FlaE AL539_24700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_24705 PF00460 Flagella basal body rod protein AL539_24705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_24710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_24710 PF00460 Flagella basal body rod protein AL539_24715 PF02107 Flagellar L-ring protein AL539_24720 PF02119 Flagellar P-ring protein AL539_24725 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL539_24725 PF10135 Rod binding protein AL539_24730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL539_24730 PF07196 Flagellin hook IN motif AL539_24735 PF00669 Bacterial flagellin N-terminal helical region AL539_24740 PF00700 Bacterial flagellin C-terminal helical region AL539_24740 PF07196 Flagellin hook IN motif AL539_24740 PF00669 Bacterial flagellin N-terminal helical region AL539_24750 PF00669 Bacterial flagellin N-terminal helical region AL539_24750 PF00700 Bacterial flagellin C-terminal helical region AL539_24750 PF07196 Flagellin hook IN motif AL539_24755 PF07196 Flagellin hook IN motif AL539_24755 PF00700 Bacterial flagellin C-terminal helical region AL539_24755 PF00669 Bacterial flagellin N-terminal helical region AL539_24760 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL539_24765 PF00391 PEP-utilising enzyme, mobile domain AL539_24765 PF05524 PEP-utilising enzyme, N-terminal AL539_24765 PF02896 PEP-utilising enzyme, TIM barrel domain AL539_24770 PF00381 PTS HPr component phosphorylation site AL539_24780 PF00291 Pyridoxal-phosphate dependent enzyme AL539_24790 PF04354 ZipA, C-terminal FtsZ-binding domain AL539_24795 PF00533 BRCA1 C Terminus (BRCT) domain AL539_24795 PF01653 NAD-dependent DNA ligase adenylation domain AL539_24795 PF03120 NAD-dependent DNA ligase OB-fold domain AL539_24795 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL539_24795 PF12826 Helix-hairpin-helix motif AL539_24800 PF03573 outer membrane porin, OprD family AL539_24815 PF16200 C-terminal region of band_7 AL539_24815 PF01145 SPFH domain / Band 7 family AL539_24820 PF00085 Thioredoxin AL539_24830 PF00106 short chain dehydrogenase AL539_24835 PF01370 NAD dependent epimerase/dehydratase family AL539_24835 PF08338 Domain of unknown function (DUF1731) AL539_24840 PF07556 Protein of unknown function (DUF1538) AL539_24845 PF07556 Protein of unknown function (DUF1538) AL539_24865 PF12850 Calcineurin-like phosphoesterase superfamily domain AL539_24880 PF17323 Trans-membrane regulatory protein ToxS AL539_24885 PF00486 Transcriptional regulatory protein, C terminal AL539_24890 PF00183 Hsp90 protein AL539_24890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_24895 PF05191 Adenylate kinase, active site lid AL539_24900 PF00762 Ferrochelatase AL539_24905 PF00854 POT family AL539_24910 PF02357 Transcription termination factor nusG AL539_24915 PF00733 Asparagine synthase AL539_24915 PF13537 Glutamine amidotransferase domain AL539_24920 PF02254 TrkA-N domain AL539_24920 PF00999 Sodium/hydrogen exchanger family AL539_24925 PF00480 ROK family AL539_24925 PF01047 MarR family AL539_24930 PF01979 Amidohydrolase family AL539_24940 PF00367 phosphotransferase system, EIIB AL539_24940 PF02378 Phosphotransferase system, EIIC AL539_24940 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL539_24945 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL539_24945 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL539_24950 PF01475 Ferric uptake regulator family AL539_24960 PF00258 Flavodoxin AL539_24970 PF12697 Alpha/beta hydrolase family AL539_24975 PF03925 SeqA protein C-terminal domain AL539_24975 PF17206 SeqA protein N-terminal domain AL539_24980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL539_24980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL539_24980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL539_24980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL539_24990 PF01784 NIF3 (NGG1p interacting factor 3) AL539_24995 PF00285 Citrate synthase, C-terminal domain AL539_25000 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL539_25005 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL539_25010 PF00890 FAD binding domain AL539_25010 PF02910 Fumarate reductase flavoprotein C-term AL539_25015 PF13085 2Fe-2S iron-sulfur cluster binding domain AL539_25020 PF16078 2-oxoglutarate dehydrogenase N-terminus AL539_25020 PF00676 Dehydrogenase E1 component AL539_25020 PF16870 2-oxoglutarate dehydrogenase C-terminal AL539_25020 PF02779 Transketolase, pyrimidine binding domain AL539_25025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL539_25025 PF00364 Biotin-requiring enzyme AL539_25025 PF02817 e3 binding domain AL539_25030 PF08442 ATP-grasp domain AL539_25030 PF00549 CoA-ligase AL539_25035 PF02629 CoA binding domain AL539_25035 PF00549 CoA-ligase AL539_25040 PF00950 ABC 3 transport family AL539_25045 PF00005 ABC transporter AL539_25050 PF01297 Zinc-uptake complex component A periplasmic AL539_25055 PF12833 Helix-turn-helix domain AL539_25060 PF04023 FeoA domain AL539_25065 PF07664 Ferrous iron transport protein B C terminus AL539_25065 PF17910 FeoB cytosolic helical domain AL539_25065 PF02421 Ferrous iron transport protein B AL539_25065 PF07670 Nucleoside recognition AL539_25085 PF00750 tRNA synthetases class I (R) AL539_25085 PF05746 DALR anticodon binding domain AL539_25085 PF03485 Arginyl tRNA synthetase N terminal domain AL539_25095 PF06185 YecM protein AL539_25100 PF00551 Formyl transferase AL539_25100 PF01842 ACT domain AL539_25105 PF13307 Helicase C-terminal domain AL539_25105 PF04851 Type III restriction enzyme, res subunit AL539_25110 PF00814 Glycoprotease family AL539_25125 PF00561 alpha/beta hydrolase fold AL539_25130 PF00501 AMP-binding enzyme AL539_25130 PF13193 AMP-binding enzyme C-terminal domain AL539_25135 PF01612 3'-5' exonuclease AL539_25135 PF00570 HRDC domain AL539_25140 PF03776 Septum formation topological specificity factor MinE AL539_25145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL539_25150 PF03775 Septum formation inhibitor MinC, C-terminal domain AL539_25150 PF05209 Septum formation inhibitor MinC, N-terminal domain AL539_25155 PF05166 YcgL domain AL539_25160 PF13406 Transglycosylase SLT domain AL539_25165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL539_25165 PF03466 LysR substrate binding domain AL539_25170 PF07662 Na+ dependent nucleoside transporter C-terminus AL539_25170 PF01773 Na+ dependent nucleoside transporter N-terminus AL539_25170 PF07670 Nucleoside recognition AL539_25175 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL539_25175 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL539_25185 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_25185 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_25195 PF07977 FabA-like domain AL539_25200 PF00109 Beta-ketoacyl synthase, N-terminal domain AL539_25200 PF02801 Beta-ketoacyl synthase, C-terminal domain AL539_25225 PF00221 Aromatic amino acid lyase AL539_25230 PF00535 Glycosyl transferase family 2 AL539_25235 PF07977 FabA-like domain AL539_25250 PF00550 Phosphopantetheine attachment site AL539_25255 PF00550 Phosphopantetheine attachment site AL539_25280 PF04820 Tryptophan halogenase AL539_25290 PF00270 DEAD/DEAH box helicase AL539_25290 PF00271 Helicase conserved C-terminal domain AL539_25295 PF02080 TrkA-C domain AL539_25295 PF02254 TrkA-N domain AL539_25300 PF02386 Cation transport protein AL539_25315 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL539_25320 PF03480 Bacterial extracellular solute-binding protein, family 7 AL539_25325 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL539_25330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL539_25340 PF00158 Sigma-54 interaction domain AL539_25340 PF02954 Bacterial regulatory protein, Fis family AL539_25340 PF00072 Response regulator receiver domain AL539_25345 PF02743 Cache domain AL539_25345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL539_25345 PF00512 His Kinase A (phospho-acceptor) domain AL539_25355 PF05697 Bacterial trigger factor protein (TF) AL539_25355 PF05698 Bacterial trigger factor protein (TF) C-terminus AL539_25355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL539_25360 PF00574 Clp protease AL539_25365 PF06689 ClpX C4-type zinc finger AL539_25365 PF07724 AAA domain (Cdc48 subfamily) AL539_25365 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_25370 PF05362 Lon protease (S16) C-terminal proteolytic domain AL539_25370 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL539_25370 PF00004 ATPase family associated with various cellular activities (AAA) AL539_25375 PF00216 Bacterial DNA-binding protein AL539_25380 PF13145 PPIC-type PPIASE domain AL539_25400 PF13286 Phosphohydrolase-associated domain AL539_25400 PF01966 HD domain AL539_25410 PF00155 Aminotransferase class I and II AL539_25415 PF00425 chorismate binding enzyme AL539_25420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL539_25420 PF16582 Middle domain of thiamine pyrophosphate AL539_25420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL539_25425 PF12697 Alpha/beta hydrolase family AL539_25430 PF00378 Enoyl-CoA hydratase/isomerase AL539_25435 PF13378 Enolase C-terminal domain-like AL539_25440 PF13193 AMP-binding enzyme C-terminal domain AL539_25440 PF00501 AMP-binding enzyme AL539_25450 PF03601 Conserved hypothetical protein 698 AL539_25455 PF07690 Major Facilitator Superfamily AL539_25505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL539_25505 PF00529 HlyD membrane-fusion protein of T1SS AL539_25510 PF00873 AcrB/AcrD/AcrF family AL539_25525 PF00291 Pyridoxal-phosphate dependent enzyme AL539_25530 PF01037 Lrp/AsnC ligand binding domain AL539_25530 PF13404 AsnC-type helix-turn-helix domain AL539_25545 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL539_25550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL539_25560 PF00990 Diguanylate cyclase, GGDEF domain AL539_25570 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL539_25570 PF00588 SpoU rRNA Methylase family AL539_25575 PF00478 IMP dehydrogenase / GMP reductase domain AL539_25575 PF00571 CBS domain AL539_25580 PF00403 Heavy-metal-associated domain AL539_25585 PF01048 Phosphorylase superfamily AL539_25595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL539_25595 PF00672 HAMP domain AL539_25600 PF01230 HIT domain AL539_25615 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL539_25615 PF13036 Peptidoglycan-synthase activator LpoB AL539_25620 PF01636 Phosphotransferase enzyme family AL539_25625 PF05728 Uncharacterised protein family (UPF0227) AL539_25630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL539_25645 PF17757 UvrB interaction domain AL539_25645 PF03461 TRCF domain AL539_25645 PF00271 Helicase conserved C-terminal domain AL539_25645 PF00270 DEAD/DEAH box helicase AL539_25645 PF02559 CarD-like/TRCF domain AL539_25655 PF12704 MacB-like periplasmic core domain AL539_25655 PF02687 FtsX-like permease family AL539_25660 PF00005 ABC transporter AL539_25665 PF02687 FtsX-like permease family AL539_25665 PF12704 MacB-like periplasmic core domain AL539_25675 PF03772 Competence protein AL539_25675 PF00753 Metallo-beta-lactamase superfamily AL539_25675 PF13567 Domain of unknown function (DUF4131) AL539_25680 PF00005 ABC transporter AL539_25680 PF00664 ABC transporter transmembrane region AL539_25685 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL539_25690 PF03966 Trm112p-like protein AL539_25695 PF02348 Cytidylyltransferase AL539_25700 PF04293 SpoVR like protein AL539_25705 PF04285 Protein of unknown function (DUF444) AL539_25710 PF08298 PrkA AAA domain AL539_25710 PF06798 PrkA serine protein kinase C-terminal domain AL539_25720 PF03887 YfbU domain AL539_25730 PF04055 Radical SAM superfamily AL539_25740 PF02901 Pyruvate formate lyase-like AL539_25740 PF01228 Glycine radical AL539_25760 PF00005 ABC transporter AL539_25765 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL539_25770 PF00528 Binding-protein-dependent transport system inner membrane component AL539_25775 PF00528 Binding-protein-dependent transport system inner membrane component AL539_25785 PF03372 Endonuclease/Exonuclease/phosphatase family AL539_25790 PF10689 Protein of unknown function (DUF2496) AL539_25795 PF07445 Primosomal replication protein priC AL539_25800 PF01925 Sulfite exporter TauE/SafE AL539_25805 PF06733 DEAD_2 AL539_25805 PF13307 Helicase C-terminal domain AL539_25815 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL539_25820 PF00849 RNA pseudouridylate synthase AL539_25825 PF03971 Monomeric isocitrate dehydrogenase AL539_25830 PF00313 'Cold-shock' DNA-binding domain AL539_25835 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL539_25840 PF00004 ATPase family associated with various cellular activities (AAA) AL539_25840 PF07724 AAA domain (Cdc48 subfamily) AL539_25840 PF10431 C-terminal, D2-small domain, of ClpB protein AL539_25840 PF17871 AAA lid domain AL539_25840 PF02861 Clp amino terminal domain, pathogenicity island component AL539_25845 PF01176 Translation initiation factor 1A / IF-1 AL539_25850 PF04376 Arginine-tRNA-protein transferase, N terminus AL539_25850 PF04377 Arginine-tRNA-protein transferase, C terminus AL539_25855 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL539_25865 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL539_25870 PF10692 Protein of unknown function (DUF2498) AL539_25875 PF01751 Toprim domain AL539_25875 PF08272 Topoisomerase I zinc-ribbon-like AL539_25875 PF01131 DNA topoisomerase AL539_25875 PF01396 Topoisomerase DNA binding C4 zinc finger AL539_25880 PF00483 Nucleotidyl transferase AL539_25885 PF00534 Glycosyl transferases group 1 AL539_25885 PF08323 Starch synthase catalytic domain AL539_25905 PF04994 TfoX C-terminal domain AL539_25905 PF04993 TfoX N-terminal domain AL539_25910 PF00356 Bacterial regulatory proteins, lacI family AL539_25915 PF02613 Nitrate reductase delta subunit AL539_25920 PF00072 Response regulator receiver domain AL539_25920 PF00486 Transcriptional regulatory protein, C terminal AL539_25925 PF02698 DUF218 domain AL539_25935 PF17193 MukF C-terminal domain AL539_25935 PF03882 MukF winged-helix domain AL539_25935 PF17192 MukF middle domain AL539_25940 PF04288 MukE-like family AL539_25945 PF04310 MukB N-terminal AL539_25945 PF16330 MukB hinge domain AL539_25965 PF18030 RimK PreATP-grasp domain AL539_25965 PF08443 RimK-like ATP-grasp domain AL539_25975 PF08003 Protein of unknown function (DUF1698) AL539_25980 PF13649 Methyltransferase domain AL539_25985 PF01904 Protein of unknown function DUF72 AL539_25990 PF00152 tRNA synthetases class II (D, K and N) AL539_25990 PF02938 GAD domain AL539_25990 PF01336 OB-fold nucleic acid binding domain AL539_25995 PF01709 Transcriptional regulator AL539_26000 PF02075 Crossover junction endodeoxyribonuclease RuvC AL539_26005 PF07499 RuvA, C-terminal domain AL539_26005 PF01330 RuvA N terminal domain AL539_26010 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL539_26010 PF05491 RuvB C-terminal winged helix domain AL539_26010 PF17864 RuvB AAA lid domain AL539_26015 PF01654 Cytochrome bd terminal oxidase subunit I AL539_26020 PF02322 Cytochrome bd terminal oxidase subunit II AL539_26025 PF08173 Membrane bound YbgT-like protein AL539_26035 PF03061 Thioesterase superfamily AL539_26040 PF01618 MotA/TolQ/ExbB proton channel family AL539_26045 PF02472 Biopolymer transport protein ExbD/TolR AL539_26055 PF04052 TolB amino-terminal domain AL539_26055 PF07676 WD40-like Beta Propeller Repeat AL539_26060 PF00691 OmpA family AL539_26065 PF16331 TolA binding protein trimerisation AL539_26065 PF13174 Tetratricopeptide repeat AL539_26070 PF02445 Quinolinate synthetase A protein AL539_26080 PF03994 Domain of Unknown Function (DUF350) AL539_26090 PF03738 Glutathionylspermidine synthase preATP-grasp