AL539_00165	PWY-5386	methylglyoxal degradation I
AL539_00165	PWY-7425	2-chloroacrylate degradation I
AL539_00180	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_00265	PWY-6683	sulfate reduction III (assimilatory)
AL539_00280	PWY-5194	siroheme biosynthesis
AL539_00280	PWY-5196	factor 430 biosynthesis
AL539_00280	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AL539_00340	PWY-4381	fatty acid biosynthesis initiation I
AL539_00355	PWY-6174	mevalonate pathway II (archaea)
AL539_00355	PWY-7391	isoprene biosynthesis II (engineered)
AL539_00355	PWY-7524	mevalonate pathway III (archaea)
AL539_00355	PWY-922	mevalonate pathway I
AL539_00360	PWY-3861	mannitol degradation II
AL539_00360	PWY-3881	mannitol biosynthesis
AL539_00360	PWY-5659	GDP-mannose biosynthesis
AL539_00360	PWY-6992	1,5-anhydrofructose degradation
AL539_00360	PWY-7456	mannan degradation
AL539_00360	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AL539_00360	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AL539_00420	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AL539_00420	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AL539_00455	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_00455	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_00455	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_00475	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_00475	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AL539_00475	PWY-6638	sulfolactate degradation III
AL539_00475	PWY-6642	(<i>R</i>)-cysteate degradation
AL539_00475	PWY-6643	coenzyme M biosynthesis II
AL539_00475	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AL539_00475	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AL539_00475	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_00630	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AL539_00630	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AL539_00630	PWY-7953	AL539_00630
AL539_00640	PWY-5392	reductive TCA cycle II
AL539_00640	PWY-5537	pyruvate fermentation to acetate V
AL539_00640	PWY-5538	pyruvate fermentation to acetate VI
AL539_00640	PWY-5690	TCA cycle II (plants and fungi)
AL539_00640	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_00640	PWY-6728	methylaspartate cycle
AL539_00640	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_00640	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AL539_00660	PWY-3821	galactose degradation III
AL539_00660	PWY-6317	galactose degradation I (Leloir pathway)
AL539_00660	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AL539_00660	PWY-6527	stachyose degradation
AL539_00660	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AL539_00660	PWY-7344	UDP-D-galactose biosynthesis
AL539_00670	PWY-4041	&gamma;-glutamyl cycle
AL539_00670	PWY-7942	AL539_00670
AL539_00705	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AL539_00705	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AL539_00705	PWY-5989	stearate biosynthesis II (bacteria and plants)
AL539_00705	PWY-6113	superpathway of mycolate biosynthesis
AL539_00705	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AL539_00705	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_00705	PWY-7663	gondoate biosynthesis (anaerobic)
AL539_00705	PWY-7664	oleate biosynthesis IV (anaerobic)
AL539_00705	PWY-7858	AL539_00705
AL539_00705	PWYG-321	mycolate biosynthesis
AL539_00855	PWY-6012	acyl carrier protein metabolism I
AL539_00895	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AL539_00895	PWY-2161	folate polyglutamylation
AL539_00895	PWY-2201	folate transformations I
AL539_00895	PWY-3841	folate transformations II
AL539_00900	PWY-622	starch biosynthesis
AL539_00900	PWY-7902	AL539_00900
AL539_00905	PWY-6788	cellulose degradation II (fungi)
AL539_00905	PWY-6855	chitin degradation I (archaea)
AL539_00905	PWY-6902	chitin degradation II
AL539_00905	PWY-7822	AL539_00905
AL539_01020	PWY-1622	formaldehyde assimilation I (serine pathway)
AL539_01020	PWY-181	photorespiration
AL539_01020	PWY-2161	folate polyglutamylation
AL539_01020	PWY-2201	folate transformations I
AL539_01020	PWY-3661	glycine betaine degradation I
AL539_01020	PWY-3661-1	glycine betaine degradation II (mammalian)
AL539_01020	PWY-3841	folate transformations II
AL539_01020	PWY-5497	purine nucleobases degradation II (anaerobic)
AL539_01120	PWY-6803	phosphatidylcholine acyl editing
AL539_01120	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AL539_01120	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AL539_01120	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AL539_01120	PWY-7783	AL539_01120
AL539_01195	PWY-5386	methylglyoxal degradation I
AL539_01225	PWY-5506	methanol oxidation to formaldehyde IV
AL539_01360	PWY-5987	sorgoleone biosynthesis
AL539_01360	PWY-5996	oleate biosynthesis II (animals and fungi)
AL539_01725	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AL539_01725	PWY-7494	choline degradation IV
AL539_01730	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AL539_01730	PWY-7494	choline degradation IV
AL539_01770	PWY-5642	2,4-dinitrotoluene degradation
AL539_01790	PWY-4381	fatty acid biosynthesis initiation I
AL539_01790	PWY-5743	3-hydroxypropanoate cycle
AL539_01790	PWY-5744	glyoxylate assimilation
AL539_01790	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_01790	PWY-6722	candicidin biosynthesis
AL539_01865	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AL539_01870	PWY-5101	L-isoleucine biosynthesis II
AL539_01870	PWY-5103	L-isoleucine biosynthesis III
AL539_01870	PWY-5104	L-isoleucine biosynthesis IV
AL539_01870	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AL539_01870	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AL539_01870	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AL539_01870	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_02250	PWY-3861	mannitol degradation II
AL539_02250	PWY-3881	mannitol biosynthesis
AL539_02250	PWY-5659	GDP-mannose biosynthesis
AL539_02250	PWY-6992	1,5-anhydrofructose degradation
AL539_02250	PWY-7456	mannan degradation
AL539_02250	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AL539_02250	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AL539_02315	PWY-6938	NADH repair
AL539_02355	PWY-5663	tetrahydrobiopterin biosynthesis I
AL539_02355	PWY-5664	tetrahydrobiopterin biosynthesis II
AL539_02355	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AL539_02355	PWY-6703	preQ<sub>0</sub> biosynthesis
AL539_02355	PWY-6983	tetrahydrobiopterin biosynthesis III
AL539_02355	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AL539_02355	PWY-7852	AL539_02355
AL539_02360	PWY-6823	molybdenum cofactor biosynthesis
AL539_02365	PWY-6823	molybdenum cofactor biosynthesis
AL539_02400	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AL539_02400	PWY-5723	Rubisco shunt
AL539_02405	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AL539_02405	PWY-5723	Rubisco shunt
AL539_02405	PWY-6891	thiazole biosynthesis II (Bacillus)
AL539_02405	PWY-6892	thiazole biosynthesis I (E. coli)
AL539_02405	PWY-6901	superpathway of glucose and xylose degradation
AL539_02405	PWY-7560	methylerythritol phosphate pathway II
AL539_02420	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AL539_02420	PWY-6164	3-dehydroquinate biosynthesis I
AL539_02420	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AL539_02460	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AL539_02500	PWY-5674	nitrate reduction IV (dissimilatory)
AL539_02535	PWY-5676	acetyl-CoA fermentation to butanoate II
AL539_02535	PWY-5741	ethylmalonyl-CoA pathway
AL539_02535	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AL539_02535	PWY-7948	AL539_02535
AL539_02660	PWY-1042	glycolysis IV (plant cytosol)
AL539_02660	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_02660	PWY-6901	superpathway of glucose and xylose degradation
AL539_02660	PWY-7003	glycerol degradation to butanol
AL539_02795	PWY-6167	flavin biosynthesis II (archaea)
AL539_02795	PWY-6168	flavin biosynthesis III (fungi)
AL539_02845	PWY-7039	phosphatidate metabolism, as a signaling molecule
AL539_02845	PWY-7817	AL539_02845
AL539_02895	PWY-6610	adenine and adenosine salvage IV
AL539_02910	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_02910	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_03095	PWY-7855	AL539_03095
AL539_03100	PWY-7855	AL539_03100
AL539_03140	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AL539_03155	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_03155	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_03425	PWY-5381	pyridine nucleotide cycling (plants)
AL539_03460	PWY-723	alkylnitronates degradation
AL539_03530	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AL539_03540	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AL539_03540	PWY-6174	mevalonate pathway II (archaea)
AL539_03540	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AL539_03540	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AL539_03540	PWY-7102	bisabolene biosynthesis
AL539_03540	PWY-7391	isoprene biosynthesis II (engineered)
AL539_03540	PWY-7524	mevalonate pathway III (archaea)
AL539_03540	PWY-7560	methylerythritol phosphate pathway II
AL539_03540	PWY-922	mevalonate pathway I
AL539_03730	PWY-6832	2-aminoethylphosphonate degradation II
AL539_03800	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AL539_03800	PWY-5743	3-hydroxypropanoate cycle
AL539_03800	PWY-5744	glyoxylate assimilation
AL539_03800	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_03800	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_03800	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AL539_03800	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AL539_03900	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_03900	PWY-7118	chitin degradation to ethanol
AL539_03900	PWY-7294	xylose degradation IV
AL539_03900	PWY-7295	L-arabinose degradation IV
AL539_03900	PWY-7854	AL539_03900
AL539_04070	PWY-40	putrescine biosynthesis I
AL539_04070	PWY-43	putrescine biosynthesis II
AL539_04070	PWY-6305	putrescine biosynthesis IV
AL539_04070	PWY-6834	spermidine biosynthesis III
AL539_04075	PWY-40	putrescine biosynthesis I
AL539_04075	PWY-6305	putrescine biosynthesis IV
AL539_04270	PWY-6910	hydroxymethylpyrimidine salvage
AL539_04270	PWY-7356	thiamin salvage IV (yeast)
AL539_04270	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AL539_04290	PWY-6899	base-degraded thiamin salvage
AL539_04290	PWY-7356	thiamin salvage IV (yeast)
AL539_04295	PWY-6897	thiamin salvage II
AL539_04295	PWY-7356	thiamin salvage IV (yeast)
AL539_04295	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AL539_04300	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AL539_04300	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AL539_04300	PWY-6897	thiamin salvage II
AL539_04300	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AL539_04300	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AL539_04300	PWY-7356	thiamin salvage IV (yeast)
AL539_04300	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AL539_04405	PWY-5386	methylglyoxal degradation I
AL539_04485	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AL539_04485	PWY-3162	L-tryptophan degradation V (side chain pathway)
AL539_04485	PWY-5057	L-valine degradation II
AL539_04485	PWY-5076	L-leucine degradation III
AL539_04485	PWY-5078	L-isoleucine degradation II
AL539_04485	PWY-5079	L-phenylalanine degradation III
AL539_04485	PWY-5082	L-methionine degradation III
AL539_04485	PWY-5480	pyruvate fermentation to ethanol I
AL539_04485	PWY-5486	pyruvate fermentation to ethanol II
AL539_04485	PWY-5751	phenylethanol biosynthesis
AL539_04485	PWY-6313	serotonin degradation
AL539_04485	PWY-6333	acetaldehyde biosynthesis I
AL539_04485	PWY-6342	noradrenaline and adrenaline degradation
AL539_04485	PWY-6587	pyruvate fermentation to ethanol III
AL539_04485	PWY-6802	salidroside biosynthesis
AL539_04485	PWY-6871	3-methylbutanol biosynthesis
AL539_04485	PWY-7013	L-1,2-propanediol degradation
AL539_04485	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_04485	PWY-7118	chitin degradation to ethanol
AL539_04485	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AL539_04485	PWY-7798	AL539_04485
AL539_04490	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AL539_04550	PWY-5532	adenosine nucleotides degradation IV
AL539_04550	PWY-7181	pyrimidine deoxyribonucleosides degradation
AL539_04595	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AL539_04650	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AL539_04650	PWY-6855	chitin degradation I (archaea)
AL539_04650	PWY-6906	chitin derivatives degradation
AL539_04750	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_04750	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AL539_04750	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AL539_04750	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_04775	PWY-6168	flavin biosynthesis III (fungi)
AL539_04775	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AL539_04775	PWY-7991	AL539_04775
AL539_04920	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AL539_04920	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AL539_04935	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AL539_04935	PWY-6853	ethylene biosynthesis II (microbes)
AL539_04935	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AL539_05245	PWY-7352	daunorubicin biosynthesis
AL539_05245	PWY-7354	aclacinomycin biosynthesis
AL539_05250	PWY-7352	daunorubicin biosynthesis
AL539_05250	PWY-7354	aclacinomycin biosynthesis
AL539_05370	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AL539_05370	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AL539_05410	PWY-5941	glycogen degradation II (eukaryotic)
AL539_05410	PWY-6731	starch degradation III
AL539_05410	PWY-6737	starch degradation V
AL539_05410	PWY-7238	sucrose biosynthesis II
AL539_05415	PWY-5941	glycogen degradation II (eukaryotic)
AL539_05415	PWY-6724	starch degradation II
AL539_05415	PWY-6737	starch degradation V
AL539_05415	PWY-7238	sucrose biosynthesis II
AL539_05420	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AL539_05420	PWY-622	starch biosynthesis
AL539_05420	PWY-7900	AL539_05420
AL539_05425	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_05425	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AL539_05425	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AL539_05425	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_05460	PWY-7511	protein ubiquitylation
AL539_05570	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_05570	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_05710	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AL539_05710	PWY-5723	Rubisco shunt
AL539_05720	PWY-5480	pyruvate fermentation to ethanol I
AL539_05720	PWY-5485	pyruvate fermentation to acetate IV
AL539_05720	PWY-5493	reductive monocarboxylic acid cycle
AL539_05875	PWY-7980	AL539_05875
AL539_05960	PWY-6854	ethylene biosynthesis III (microbes)
AL539_05985	PWY-7378	aminopropanol phosphate biosynthesis II
AL539_06015	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AL539_06015	PWY-5743	3-hydroxypropanoate cycle
AL539_06015	PWY-5744	glyoxylate assimilation
AL539_06015	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_06015	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_06015	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AL539_06015	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AL539_06155	PWY-4202	arsenate detoxification I (glutaredoxin)
AL539_06155	PWY-5532	adenosine nucleotides degradation IV
AL539_06155	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AL539_06155	PWY-6608	guanosine nucleotides degradation III
AL539_06155	PWY-6609	adenine and adenosine salvage III
AL539_06155	PWY-6611	adenine and adenosine salvage V
AL539_06155	PWY-6620	guanine and guanosine salvage
AL539_06155	PWY-6627	salinosporamide A biosynthesis
AL539_06155	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AL539_06155	PWY-7179	purine deoxyribonucleosides degradation I
AL539_06155	PWY-7179-1	purine deoxyribonucleosides degradation
AL539_06510	PWY-6655	xanthan biosynthesis
AL539_06510	PWY-6658	acetan biosynthesis
AL539_06595	PWY-5686	UMP biosynthesis
AL539_06595	PWY-7790	AL539_06595
AL539_06595	PWY-7791	AL539_06595
AL539_06610	PWY-5963	thio-molybdenum cofactor biosynthesis
AL539_06700	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AL539_06700	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AL539_06805	PWY-4381	fatty acid biosynthesis initiation I
AL539_06805	PWY-5743	3-hydroxypropanoate cycle
AL539_06805	PWY-5744	glyoxylate assimilation
AL539_06805	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_06805	PWY-6722	candicidin biosynthesis
AL539_06945	PWY-1881	formate oxidation to CO<sub>2</sub>
AL539_06945	PWY-5497	purine nucleobases degradation II (anaerobic)
AL539_06945	PWY-6696	oxalate degradation III
AL539_06945	PWY-7985	AL539_06945
AL539_07085	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AL539_07175	PWY-6749	CMP-legionaminate biosynthesis I
AL539_07185	PWY-3781	aerobic respiration I (cytochrome c)
AL539_07185	PWY-4521	arsenite oxidation I (respiratory)
AL539_07185	PWY-6692	Fe(II) oxidation
AL539_07185	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AL539_07375	PWY-6134	L-tyrosine biosynthesis IV
AL539_07375	PWY-7158	L-phenylalanine degradation V
AL539_07380	PWY-7158	L-phenylalanine degradation V
AL539_07610	PWY-7942	AL539_07610
AL539_07705	PWY-5482	pyruvate fermentation to acetate II
AL539_07705	PWY-5485	pyruvate fermentation to acetate IV
AL539_07705	PWY-5497	purine nucleobases degradation II (anaerobic)
AL539_07755	PWY-5686	UMP biosynthesis
AL539_07755	PWY-7790	AL539_07755
AL539_07755	PWY-7791	AL539_07755
AL539_07830	PWY-5074	mevalonate degradation
AL539_07840	PWY-4381	fatty acid biosynthesis initiation I
AL539_07840	PWY-5743	3-hydroxypropanoate cycle
AL539_07840	PWY-5744	glyoxylate assimilation
AL539_07840	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_07840	PWY-6722	candicidin biosynthesis
AL539_07860	PWY-5642	2,4-dinitrotoluene degradation
AL539_07895	PWY-3781	aerobic respiration I (cytochrome c)
AL539_07895	PWY-4521	arsenite oxidation I (respiratory)
AL539_07895	PWY-6692	Fe(II) oxidation
AL539_07895	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AL539_07895	PWY-7544	pyruvate to cytochrome <i>bo</i> oxidase electron transfer
AL539_07935	PWY-7533	gliotoxin biosynthesis
AL539_08145	PWY-5194	siroheme biosynthesis
AL539_08145	PWY-5196	factor 430 biosynthesis
AL539_08145	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AL539_08195	PWY-6683	sulfate reduction III (assimilatory)
AL539_09120	PWY-622	starch biosynthesis
AL539_09120	PWY-7902	AL539_09120
AL539_09405	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AL539_09740	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AL539_09765	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AL539_09770	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_09770	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AL539_09770	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AL539_09775	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_09780	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AL539_09835	PWY-6123	inosine-5'-phosphate biosynthesis I
AL539_09835	PWY-6124	inosine-5'-phosphate biosynthesis II
AL539_09835	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AL539_09835	PWY-7234	inosine-5'-phosphate biosynthesis III
AL539_09845	PWY-7887	AL539_09845
AL539_09845	PWY-7892	AL539_09845
AL539_09935	PWY-7199	pyrimidine deoxyribonucleosides salvage
AL539_09995	PWY-6527	stachyose degradation
AL539_10005	PWY-7805	AL539_10005
AL539_10005	PWY-7807	AL539_10005
AL539_10270	PWY-7094	fatty acid salvage
AL539_10270	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AL539_10275	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AL539_10275	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AL539_10275	PWY-5989	stearate biosynthesis II (bacteria and plants)
AL539_10275	PWY-6113	superpathway of mycolate biosynthesis
AL539_10275	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AL539_10275	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_10275	PWY-7663	gondoate biosynthesis (anaerobic)
AL539_10275	PWY-7664	oleate biosynthesis IV (anaerobic)
AL539_10275	PWY-7858	AL539_10275
AL539_10275	PWYG-321	mycolate biosynthesis
AL539_10300	PWY-5155	&beta;-alanine biosynthesis III
AL539_10410	PWY-6339	syringate degradation
AL539_10430	PWY-6123	inosine-5'-phosphate biosynthesis I
AL539_10430	PWY-6124	inosine-5'-phosphate biosynthesis II
AL539_10430	PWY-7234	inosine-5'-phosphate biosynthesis III
AL539_10470	PWY-6825	phosphatidylcholine biosynthesis V
AL539_10480	PWY-5028	L-histidine degradation II
AL539_10480	PWY-5030	L-histidine degradation III
AL539_10485	PWY-5028	L-histidine degradation II
AL539_10485	PWY-5030	L-histidine degradation III
AL539_10495	PWY-5028	L-histidine degradation II
AL539_10495	PWY-5030	L-histidine degradation III
AL539_10605	PWY-6556	pyrimidine ribonucleosides salvage II
AL539_10605	PWY-7181	pyrimidine deoxyribonucleosides degradation
AL539_10605	PWY-7193	pyrimidine ribonucleosides salvage I
AL539_10605	PWY-7199	pyrimidine deoxyribonucleosides salvage
AL539_10635	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AL539_10635	PWY-6269	adenosylcobalamin salvage from cobinamide II
AL539_10635	PWY-7964	AL539_10635
AL539_10635	PWY-7965	AL539_10635
AL539_10635	PWY-7966	AL539_10635
AL539_10635	PWY-7967	AL539_10635
AL539_10635	PWY-7968	AL539_10635
AL539_10635	PWY-7969	AL539_10635
AL539_10635	PWY-7970	AL539_10635
AL539_10640	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AL539_10640	PWY-6269	adenosylcobalamin salvage from cobinamide II
AL539_10640	PWY-7961	AL539_10640
AL539_10640	PWY-7963	AL539_10640
AL539_10640	PWY-7964	AL539_10640
AL539_10640	PWY-7965	AL539_10640
AL539_10640	PWY-7966	AL539_10640
AL539_10640	PWY-7967	AL539_10640
AL539_10640	PWY-7968	AL539_10640
AL539_10640	PWY-7969	AL539_10640
AL539_10640	PWY-7970	AL539_10640
AL539_10640	PWY-7975	AL539_10640
AL539_10645	PWY-6269	adenosylcobalamin salvage from cobinamide II
AL539_10645	PWY-7962	AL539_10645
AL539_10645	PWY-7971	AL539_10645
AL539_10645	PWY-7972	AL539_10645
AL539_10650	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AL539_10650	PWY-6269	adenosylcobalamin salvage from cobinamide II
AL539_10650	PWY-7961	AL539_10650
AL539_10650	PWY-7963	AL539_10650
AL539_10650	PWY-7964	AL539_10650
AL539_10650	PWY-7965	AL539_10650
AL539_10650	PWY-7966	AL539_10650
AL539_10650	PWY-7967	AL539_10650
AL539_10650	PWY-7968	AL539_10650
AL539_10650	PWY-7969	AL539_10650
AL539_10650	PWY-7970	AL539_10650
AL539_10650	PWY-7975	AL539_10650
AL539_11005	PWY-381	nitrate reduction II (assimilatory)
AL539_11005	PWY-5675	nitrate reduction V (assimilatory)
AL539_11005	PWY-6549	L-glutamine biosynthesis III
AL539_11005	PWY-6963	ammonia assimilation cycle I
AL539_11005	PWY-6964	ammonia assimilation cycle II
AL539_11035	PWY-43	putrescine biosynthesis II
AL539_11040	PWY-43	putrescine biosynthesis II
AL539_11215	PWY-6409	pyoverdine I biosynthesis
AL539_11215	PWY-6562	norspermidine biosynthesis
AL539_11215	PWY-761	rhizobactin 1021 biosynthesis
AL539_11215	PWY-7855	AL539_11215
AL539_11215	PWY-7988	AL539_11215
AL539_11660	PWY-6167	flavin biosynthesis II (archaea)
AL539_11660	PWY-6168	flavin biosynthesis III (fungi)
AL539_11660	PWY-7980	AL539_11660
AL539_11730	PWY-6517	<i>N</i>-acetylglucosamine degradation II
AL539_11730	PWY-6906	chitin derivatives degradation
AL539_11740	PWY-6823	molybdenum cofactor biosynthesis
AL539_11745	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AL539_11745	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
AL539_12055	PWY-3781	aerobic respiration I (cytochrome c)
AL539_12055	PWY-4521	arsenite oxidation I (respiratory)
AL539_12055	PWY-6692	Fe(II) oxidation
AL539_12055	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AL539_12110	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AL539_12110	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AL539_12110	PWY-5989	stearate biosynthesis II (bacteria and plants)
AL539_12110	PWY-5994	palmitate biosynthesis I (animals and fungi)
AL539_12110	PWY-6113	superpathway of mycolate biosynthesis
AL539_12110	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AL539_12110	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_12110	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AL539_12110	PWY-7663	gondoate biosynthesis (anaerobic)
AL539_12110	PWY-7664	oleate biosynthesis IV (anaerobic)
AL539_12110	PWY-7858	AL539_12110
AL539_12110	PWYG-321	mycolate biosynthesis
AL539_12145	PWY-5686	UMP biosynthesis
AL539_12150	PWY-5022	4-aminobutanoate degradation V
AL539_12150	PWY-6728	methylaspartate cycle
AL539_12150	PWY-7126	ethylene biosynthesis IV
AL539_12220	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AL539_12220	PWY-6164	3-dehydroquinate biosynthesis I
AL539_12220	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AL539_12230	PWY-5194	siroheme biosynthesis
AL539_12230	PWY-5196	factor 430 biosynthesis
AL539_12230	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AL539_12485	PWY-6703	preQ<sub>0</sub> biosynthesis
AL539_12490	PWY-6703	preQ<sub>0</sub> biosynthesis
AL539_12515	PWY-5108	L-isoleucine biosynthesis V
AL539_12515	PWY-5132	humulone biosynthesis
AL539_12515	PWY-5133	cohumulone biosynthesis
AL539_12515	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AL539_12515	PWY-7118	chitin degradation to ethanol
AL539_12515	PWY-7857	AL539_12515
AL539_12535	PWY-5747	2-methylcitrate cycle II
AL539_12545	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AL539_12645	PWY-7980	AL539_12645
AL539_12830	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AL539_12830	PWY-6855	chitin degradation I (archaea)
AL539_12830	PWY-6906	chitin derivatives degradation
AL539_12835	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AL539_12900	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AL539_12900	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AL539_12905	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_12905	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AL539_12905	PWY-6638	sulfolactate degradation III
AL539_12905	PWY-6642	(<i>R</i>)-cysteate degradation
AL539_12905	PWY-6643	coenzyme M biosynthesis II
AL539_12905	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AL539_12905	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AL539_12905	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_13005	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AL539_13005	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AL539_13135	PWY-1801	formaldehyde oxidation II (glutathione-dependent)
AL539_13420	PWY-5381	pyridine nucleotide cycling (plants)
AL539_13420	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AL539_13420	PWY-6596	adenosine nucleotides degradation I
AL539_13420	PWY-6606	guanosine nucleotides degradation II
AL539_13420	PWY-6607	guanosine nucleotides degradation I
AL539_13420	PWY-6608	guanosine nucleotides degradation III
AL539_13420	PWY-7185	UTP and CTP dephosphorylation I
AL539_13420	PWY-7821	AL539_13420
AL539_13815	PWY-5392	reductive TCA cycle II
AL539_13815	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AL539_13815	PWY-5690	TCA cycle II (plants and fungi)
AL539_13815	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_13815	PWY-6728	methylaspartate cycle
AL539_13815	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_13815	PWY-7254	TCA cycle VII (acetate-producers)
AL539_13815	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AL539_13825	PWY-5958	acridone alkaloid biosynthesis
AL539_13825	PWY-6543	4-aminobenzoate biosynthesis
AL539_13825	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AL539_13825	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AL539_13900	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_13900	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AL539_13900	PWY-6638	sulfolactate degradation III
AL539_13900	PWY-6642	(<i>R</i>)-cysteate degradation
AL539_13900	PWY-6643	coenzyme M biosynthesis II
AL539_13900	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AL539_13900	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AL539_13900	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_14005	PWY-6168	flavin biosynthesis III (fungi)
AL539_14005	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AL539_14005	PWY-7991	AL539_14005
AL539_14045	PWY-5674	nitrate reduction IV (dissimilatory)
AL539_14065	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AL539_14065	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AL539_14065	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AL539_14065	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AL539_14065	PWY-5871	ubiquinol-9 biosynthesis (eukaryotic)
AL539_14065	PWY-5872	ubiquinol-10 biosynthesis (eukaryotic)
AL539_14065	PWY-5873	ubiquinol-7 biosynthesis (eukaryotic)
AL539_14065	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AL539_14065	PWY-7230	ubiquinol-6 biosynthesis from 4-aminobenzoate (eukaryotic)
AL539_14065	PWY-7233	ubiquinol-6 bypass biosynthesis (eukaryotic)
AL539_14075	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AL539_14075	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AL539_14075	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AL539_14075	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AL539_14075	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_14075	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_14075	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AL539_14075	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AL539_14080	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AL539_14080	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AL539_14080	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AL539_14080	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AL539_14080	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_14080	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_14080	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AL539_14080	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AL539_14105	PWY-6562	norspermidine biosynthesis
AL539_14115	PWY-6409	pyoverdine I biosynthesis
AL539_14115	PWY-6562	norspermidine biosynthesis
AL539_14115	PWY-761	rhizobactin 1021 biosynthesis
AL539_14115	PWY-7855	AL539_14115
AL539_14115	PWY-7988	AL539_14115
AL539_14140	PWY-5269	cardiolipin biosynthesis II
AL539_14140	PWY-5668	cardiolipin biosynthesis I
AL539_14140	PWY-7817	AL539_14140
AL539_14200	PWY-5958	acridone alkaloid biosynthesis
AL539_14200	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AL539_14200	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AL539_14205	PWY-5958	acridone alkaloid biosynthesis
AL539_14205	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AL539_14205	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AL539_14250	PWY-6157	autoinducer AI-1 biosynthesis
AL539_14285	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AL539_14285	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AL539_14285	PWY-6936	seleno-amino acid biosynthesis
AL539_14285	PWY-702	L-methionine biosynthesis II
AL539_14380	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AL539_14380	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AL539_14380	PWY-6936	seleno-amino acid biosynthesis
AL539_14380	PWY-702	L-methionine biosynthesis II
AL539_14520	PWY-5686	UMP biosynthesis
AL539_14520	PWY-7790	AL539_14520
AL539_14520	PWY-7791	AL539_14520
AL539_14545	PWY-7205	CMP phosphorylation
AL539_14585	PWY-1042	glycolysis IV (plant cytosol)
AL539_14585	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AL539_14585	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_14585	PWY-5723	Rubisco shunt
AL539_14585	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_14585	PWY-6886	1-butanol autotrophic biosynthesis
AL539_14585	PWY-6901	superpathway of glucose and xylose degradation
AL539_14585	PWY-7003	glycerol degradation to butanol
AL539_14585	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AL539_14585	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_14630	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AL539_14630	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AL539_14630	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_14630	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AL539_14630	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AL539_14630	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AL539_14640	PWY-6543	4-aminobenzoate biosynthesis
AL539_14655	PWY-5367	petroselinate biosynthesis
AL539_14655	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AL539_14655	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AL539_14655	PWY-5989	stearate biosynthesis II (bacteria and plants)
AL539_14655	PWY-5994	palmitate biosynthesis I (animals and fungi)
AL539_14655	PWY-6113	superpathway of mycolate biosynthesis
AL539_14655	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AL539_14655	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_14655	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AL539_14655	PWY-7663	gondoate biosynthesis (anaerobic)
AL539_14655	PWY-7664	oleate biosynthesis IV (anaerobic)
AL539_14655	PWY-7858	AL539_14655
AL539_14655	PWYG-321	mycolate biosynthesis
AL539_14660	PWY-4381	fatty acid biosynthesis initiation I
AL539_14660	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AL539_14660	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AL539_14665	PWY-4381	fatty acid biosynthesis initiation I
AL539_14730	PWY-7193	pyrimidine ribonucleosides salvage I
AL539_14795	PWY-842	starch degradation I
AL539_14820	PWY-5482	pyruvate fermentation to acetate II
AL539_14820	PWY-5485	pyruvate fermentation to acetate IV
AL539_14820	PWY-5497	purine nucleobases degradation II (anaerobic)
AL539_14825	PWY-1281	sulfoacetaldehyde degradation I
AL539_14825	PWY-5482	pyruvate fermentation to acetate II
AL539_14825	PWY-5485	pyruvate fermentation to acetate IV
AL539_14825	PWY-5497	purine nucleobases degradation II (anaerobic)
AL539_14825	PWY-6637	sulfolactate degradation II
AL539_14870	PWY-6823	molybdenum cofactor biosynthesis
AL539_14870	PWY-7887	AL539_14870
AL539_14880	PWY-6823	molybdenum cofactor biosynthesis
AL539_14890	PWY-6823	molybdenum cofactor biosynthesis
AL539_14920	PWY-5480	pyruvate fermentation to ethanol I
AL539_14920	PWY-5485	pyruvate fermentation to acetate IV
AL539_14920	PWY-5493	reductive monocarboxylic acid cycle
AL539_14960	PWY-5386	methylglyoxal degradation I
AL539_15010	PWY-6854	ethylene biosynthesis III (microbes)
AL539_15025	PWY-3162	L-tryptophan degradation V (side chain pathway)
AL539_15025	PWY-5057	L-valine degradation II
AL539_15025	PWY-5076	L-leucine degradation III
AL539_15025	PWY-5078	L-isoleucine degradation II
AL539_15025	PWY-5079	L-phenylalanine degradation III
AL539_15025	PWY-5082	L-methionine degradation III
AL539_15025	PWY-5480	pyruvate fermentation to ethanol I
AL539_15025	PWY-5486	pyruvate fermentation to ethanol II
AL539_15025	PWY-5751	phenylethanol biosynthesis
AL539_15025	PWY-6313	serotonin degradation
AL539_15025	PWY-6333	acetaldehyde biosynthesis I
AL539_15025	PWY-6342	noradrenaline and adrenaline degradation
AL539_15025	PWY-6587	pyruvate fermentation to ethanol III
AL539_15025	PWY-6802	salidroside biosynthesis
AL539_15025	PWY-6871	3-methylbutanol biosynthesis
AL539_15025	PWY-7013	L-1,2-propanediol degradation
AL539_15025	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_15025	PWY-7118	chitin degradation to ethanol
AL539_15025	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AL539_15040	PWY-2941	L-lysine biosynthesis II
AL539_15040	PWY-2942	L-lysine biosynthesis III
AL539_15040	PWY-5097	L-lysine biosynthesis VI
AL539_15040	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_15040	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AL539_15040	PWY-6559	spermidine biosynthesis II
AL539_15040	PWY-6562	norspermidine biosynthesis
AL539_15040	PWY-7153	grixazone biosynthesis
AL539_15040	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_15040	PWY-7977	AL539_15040
AL539_15140	PWY-1042	glycolysis IV (plant cytosol)
AL539_15140	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_15140	PWY-6901	superpathway of glucose and xylose degradation
AL539_15140	PWY-7003	glycerol degradation to butanol
AL539_15175	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AL539_15175	PWY-5491	diethylphosphate degradation
AL539_15235	PWY-6605	adenine and adenosine salvage II
AL539_15235	PWY-6610	adenine and adenosine salvage IV
AL539_15235	PWY-7805	AL539_15235
AL539_15235	PWY-7807	AL539_15235
AL539_15260	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AL539_15260	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AL539_15260	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AL539_15260	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AL539_15275	PWY-2161	folate polyglutamylation
AL539_15280	PWY-4381	fatty acid biosynthesis initiation I
AL539_15280	PWY-5743	3-hydroxypropanoate cycle
AL539_15280	PWY-5744	glyoxylate assimilation
AL539_15280	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_15280	PWY-6722	candicidin biosynthesis
AL539_15300	PWY-2941	L-lysine biosynthesis II
AL539_15300	PWY-2942	L-lysine biosynthesis III
AL539_15300	PWY-5097	L-lysine biosynthesis VI
AL539_15300	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_15300	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AL539_15300	PWY-6559	spermidine biosynthesis II
AL539_15300	PWY-6562	norspermidine biosynthesis
AL539_15300	PWY-7153	grixazone biosynthesis
AL539_15300	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_15300	PWY-7977	AL539_15300
AL539_15320	PWY-7892	AL539_15320
AL539_15355	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AL539_15385	PWY-1361	benzoyl-CoA degradation I (aerobic)
AL539_15385	PWY-5109	2-methylbutanoate biosynthesis
AL539_15385	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AL539_15385	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AL539_15385	PWY-5177	glutaryl-CoA degradation
AL539_15385	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_15385	PWY-6435	4-hydroxybenzoate biosynthesis V
AL539_15385	PWY-6583	pyruvate fermentation to butanol I
AL539_15385	PWY-6863	pyruvate fermentation to hexanol
AL539_15385	PWY-6883	pyruvate fermentation to butanol II
AL539_15385	PWY-6944	androstenedione degradation
AL539_15385	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AL539_15385	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AL539_15385	PWY-7007	methyl ketone biosynthesis
AL539_15385	PWY-7046	4-coumarate degradation (anaerobic)
AL539_15385	PWY-7094	fatty acid salvage
AL539_15385	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AL539_15385	PWY-735	jasmonic acid biosynthesis
AL539_15385	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AL539_15385	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AL539_15385	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AL539_15385	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AL539_15385	PWY-7726	AL539_15385
AL539_15385	PWY-7778	AL539_15385
AL539_15385	PWY-7779	AL539_15385
AL539_15390	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AL539_15390	PWY-6435	4-hydroxybenzoate biosynthesis V
AL539_15390	PWY-6863	pyruvate fermentation to hexanol
AL539_15390	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AL539_15390	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AL539_15390	PWY-6948	sitosterol degradation to androstenedione
AL539_15390	PWY-7094	fatty acid salvage
AL539_15390	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
AL539_15390	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
AL539_15390	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
AL539_15390	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
AL539_15390	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
AL539_15390	PWY-735	jasmonic acid biosynthesis
AL539_15390	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AL539_15390	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AL539_15390	PWY-7726	AL539_15390
AL539_15625	PWY-7980	AL539_15625
AL539_15755	PWY-2941	L-lysine biosynthesis II
AL539_15755	PWY-2942	L-lysine biosynthesis III
AL539_15755	PWY-5097	L-lysine biosynthesis VI
AL539_15785	PWY-4202	arsenate detoxification I (glutaredoxin)
AL539_15785	PWY-4621	arsenate detoxification II (glutaredoxin)
AL539_15790	PWY-7731	AL539_15790
AL539_15810	PWY-7183	pyrimidine nucleobases salvage I
AL539_15815	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AL539_15815	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AL539_15815	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AL539_15820	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AL539_15820	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AL539_15830	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
AL539_15835	PWY-7094	fatty acid salvage
AL539_15835	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AL539_15880	PWY-5386	methylglyoxal degradation I
AL539_15915	PWY-4381	fatty acid biosynthesis initiation I
AL539_15915	PWY-5743	3-hydroxypropanoate cycle
AL539_15915	PWY-5744	glyoxylate assimilation
AL539_15915	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_15915	PWY-6722	candicidin biosynthesis
AL539_15940	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AL539_15940	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AL539_15940	PWY-5989	stearate biosynthesis II (bacteria and plants)
AL539_15940	PWY-5994	palmitate biosynthesis I (animals and fungi)
AL539_15940	PWY-6113	superpathway of mycolate biosynthesis
AL539_15940	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AL539_15940	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_15940	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AL539_15940	PWY-7663	gondoate biosynthesis (anaerobic)
AL539_15940	PWY-7664	oleate biosynthesis IV (anaerobic)
AL539_15940	PWY-7858	AL539_15940
AL539_15940	PWYG-321	mycolate biosynthesis
AL539_15965	PWY-7560	methylerythritol phosphate pathway II
AL539_15970	PWY-5667	CDP-diacylglycerol biosynthesis I
AL539_15970	PWY-5981	CDP-diacylglycerol biosynthesis III
AL539_15970	PWY-7817	AL539_15970
AL539_16000	PWY-7799	AL539_16000
AL539_16000	PWY-7800	AL539_16000
AL539_16055	PWY-4381	fatty acid biosynthesis initiation I
AL539_16130	PWY-6855	chitin degradation I (archaea)
AL539_16130	PWY-6902	chitin degradation II
AL539_16130	PWY-7822	AL539_16130
AL539_16260	PWY-6654	phosphopantothenate biosynthesis III
AL539_16270	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AL539_16305	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_16395	PWY-4261	glycerol degradation I
AL539_16405	PWY-4261	glycerol degradation I
AL539_16405	PWY-6118	glycerol-3-phosphate shuttle
AL539_16405	PWY-6952	glycerophosphodiester degradation
AL539_16515	PWY-4202	arsenate detoxification I (glutaredoxin)
AL539_16515	PWY-5532	adenosine nucleotides degradation IV
AL539_16515	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AL539_16515	PWY-6608	guanosine nucleotides degradation III
AL539_16515	PWY-6609	adenine and adenosine salvage III
AL539_16515	PWY-6611	adenine and adenosine salvage V
AL539_16515	PWY-6620	guanine and guanosine salvage
AL539_16515	PWY-6627	salinosporamide A biosynthesis
AL539_16515	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AL539_16515	PWY-7179	purine deoxyribonucleosides degradation I
AL539_16515	PWY-7179-1	purine deoxyribonucleosides degradation
AL539_16520	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AL539_16525	PWY-7181	pyrimidine deoxyribonucleosides degradation
AL539_16530	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AL539_16670	PWY-6749	CMP-legionaminate biosynthesis I
AL539_16675	PWY-6614	tetrahydrofolate biosynthesis
AL539_16705	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_16705	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_16740	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AL539_16785	PWY-6788	cellulose degradation II (fungi)
AL539_16795	PWY-6902	chitin degradation II
AL539_16795	PWY-7822	AL539_16795
AL539_16795	PWY-7883	AL539_16795
AL539_16805	PWY-6749	CMP-legionaminate biosynthesis I
AL539_16840	PWY-5747	2-methylcitrate cycle II
AL539_16850	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_16850	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AL539_16850	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AL539_16850	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_16880	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AL539_16880	PWY-6148	tetrahydromethanopterin biosynthesis
AL539_16880	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AL539_16880	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AL539_16880	PWY-7852	AL539_16880
AL539_16880	PWY-7853	AL539_16880
AL539_16885	PWY-6654	phosphopantothenate biosynthesis III
AL539_16920	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AL539_16920	PWY-5743	3-hydroxypropanoate cycle
AL539_16920	PWY-5744	glyoxylate assimilation
AL539_16920	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_16920	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_16920	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AL539_16920	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AL539_16925	PWY-6599	guanine and guanosine salvage II
AL539_16925	PWY-6609	adenine and adenosine salvage III
AL539_16925	PWY-6610	adenine and adenosine salvage IV
AL539_16925	PWY-6620	guanine and guanosine salvage
AL539_16935	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AL539_16935	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AL539_16945	PWY-6891	thiazole biosynthesis II (Bacillus)
AL539_16945	PWY-6892	thiazole biosynthesis I (E. coli)
AL539_16945	PWY-7560	methylerythritol phosphate pathway II
AL539_16960	PWY-5316	nicotine biosynthesis
AL539_16960	PWY-5381	pyridine nucleotide cycling (plants)
AL539_16960	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AL539_16960	PWY-7342	superpathway of nicotine biosynthesis
AL539_16985	PWY-7851	AL539_16985
AL539_17005	PWY-6829	tRNA methylation (yeast)
AL539_17005	PWY-7285	methylwyosine biosynthesis
AL539_17005	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AL539_17035	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AL539_17035	PWY-6153	autoinducer AI-2 biosynthesis I
AL539_17035	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
AL539_17045	PWY-6840	homoglutathione biosynthesis
AL539_17045	PWY-7255	ergothioneine biosynthesis I (bacteria)
AL539_17135	PWY-2941	L-lysine biosynthesis II
AL539_17135	PWY-2942	L-lysine biosynthesis III
AL539_17135	PWY-5097	L-lysine biosynthesis VI
AL539_17135	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AL539_17135	PWY-6559	spermidine biosynthesis II
AL539_17135	PWY-6562	norspermidine biosynthesis
AL539_17135	PWY-7153	grixazone biosynthesis
AL539_17135	PWY-7977	AL539_17135
AL539_17180	PWY-5381	pyridine nucleotide cycling (plants)
AL539_17180	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AL539_17180	PWY-6596	adenosine nucleotides degradation I
AL539_17180	PWY-6606	guanosine nucleotides degradation II
AL539_17180	PWY-6607	guanosine nucleotides degradation I
AL539_17180	PWY-6608	guanosine nucleotides degradation III
AL539_17180	PWY-7185	UTP and CTP dephosphorylation I
AL539_17180	PWY-7821	AL539_17180
AL539_17190	PWY-7560	methylerythritol phosphate pathway II
AL539_17195	PWY-7560	methylerythritol phosphate pathway II
AL539_17205	PWY-1042	glycolysis IV (plant cytosol)
AL539_17205	PWY-1622	formaldehyde assimilation I (serine pathway)
AL539_17205	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AL539_17205	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_17205	PWY-5723	Rubisco shunt
AL539_17205	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_17205	PWY-6886	1-butanol autotrophic biosynthesis
AL539_17205	PWY-6901	superpathway of glucose and xylose degradation
AL539_17205	PWY-7003	glycerol degradation to butanol
AL539_17205	PWY-7124	ethylene biosynthesis V (engineered)
AL539_17205	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AL539_17210	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AL539_17210	PWY-7177	UTP and CTP dephosphorylation II
AL539_17210	PWY-7185	UTP and CTP dephosphorylation I
AL539_17245	PWY-6012	acyl carrier protein metabolism I
AL539_17245	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AL539_17245	PWY-6289	petrobactin biosynthesis
AL539_17305	PWY-5316	nicotine biosynthesis
AL539_17305	PWY-7342	superpathway of nicotine biosynthesis
AL539_17370	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AL539_17370	PWY-5723	Rubisco shunt
AL539_17405	PWY-1042	glycolysis IV (plant cytosol)
AL539_17405	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AL539_17405	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_17405	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_17405	PWY-7385	1,3-propanediol biosynthesis (engineered)
AL539_17410	PWY-1042	glycolysis IV (plant cytosol)
AL539_17410	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_17410	PWY-6886	1-butanol autotrophic biosynthesis
AL539_17410	PWY-6901	superpathway of glucose and xylose degradation
AL539_17410	PWY-7003	glycerol degradation to butanol
AL539_17430	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AL539_17430	PWY-5723	Rubisco shunt
AL539_17430	PWY-6891	thiazole biosynthesis II (Bacillus)
AL539_17430	PWY-6892	thiazole biosynthesis I (E. coli)
AL539_17430	PWY-6901	superpathway of glucose and xylose degradation
AL539_17430	PWY-7560	methylerythritol phosphate pathway II
AL539_17440	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AL539_17440	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AL539_17490	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_17495	PWY-3341	L-proline biosynthesis III
AL539_17495	PWY-4981	L-proline biosynthesis II (from arginine)
AL539_17495	PWY-6344	L-ornithine degradation II (Stickland reaction)
AL539_17570	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AL539_17625	PWY-5386	methylglyoxal degradation I
AL539_17725	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AL539_18075	PWY-4981	L-proline biosynthesis II (from arginine)
AL539_18080	PWY-4981	L-proline biosynthesis II (from arginine)
AL539_18080	PWY-4984	urea cycle
AL539_18080	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_18090	PWY-5686	UMP biosynthesis
AL539_18090	PWY-7790	AL539_18090
AL539_18090	PWY-7791	AL539_18090
AL539_18105	PWY-5667	CDP-diacylglycerol biosynthesis I
AL539_18105	PWY-5981	CDP-diacylglycerol biosynthesis III
AL539_18105	PWY-6453	stigma estolide biosynthesis
AL539_18105	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AL539_18105	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AL539_18105	PWY-7587	oleate biosynthesis III (cyanobacteria)
AL539_18105	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
AL539_18105	PWY-7782	AL539_18105
AL539_18110	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AL539_18110	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AL539_18110	PWY-7953	AL539_18110
AL539_18305	PWY-3801	sucrose degradation II (sucrose synthase)
AL539_18305	PWY-6527	stachyose degradation
AL539_18305	PWY-7238	sucrose biosynthesis II
AL539_18305	PWY-7343	UDP-glucose biosynthesis
AL539_18305	PWY-7817	AL539_18305
AL539_18320	PWY-6832	2-aminoethylphosphonate degradation II
AL539_18330	PWY-2941	L-lysine biosynthesis II
AL539_18330	PWY-2942	L-lysine biosynthesis III
AL539_18330	PWY-5097	L-lysine biosynthesis VI
AL539_18330	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AL539_18330	PWY-6559	spermidine biosynthesis II
AL539_18330	PWY-6562	norspermidine biosynthesis
AL539_18330	PWY-7153	grixazone biosynthesis
AL539_18330	PWY-7977	AL539_18330
AL539_18335	PWY-2201	folate transformations I
AL539_18335	PWY-3841	folate transformations II
AL539_18335	PWY-7977	AL539_18335
AL539_18405	PWY-6683	sulfate reduction III (assimilatory)
AL539_18410	PWY-6683	sulfate reduction III (assimilatory)
AL539_18445	PWY-3801	sucrose degradation II (sucrose synthase)
AL539_18445	PWY-5054	sorbitol biosynthesis I
AL539_18445	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AL539_18445	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AL539_18445	PWY-5659	GDP-mannose biosynthesis
AL539_18445	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_18445	PWY-621	sucrose degradation III (sucrose invertase)
AL539_18445	PWY-622	starch biosynthesis
AL539_18445	PWY-6981	chitin biosynthesis
AL539_18445	PWY-6992	1,5-anhydrofructose degradation
AL539_18445	PWY-7238	sucrose biosynthesis II
AL539_18445	PWY-7347	sucrose biosynthesis III
AL539_18445	PWY-7385	1,3-propanediol biosynthesis (engineered)
AL539_18455	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_18490	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AL539_18490	PWY-5723	Rubisco shunt
AL539_18505	PWY-6164	3-dehydroquinate biosynthesis I
AL539_18510	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AL539_18540	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_18540	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AL539_18540	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AL539_18540	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_18555	PWY-6854	ethylene biosynthesis III (microbes)
AL539_18565	PWY-4983	L-citrulline-nitric oxide cycle
AL539_18565	PWY-4984	urea cycle
AL539_18565	PWY-5	canavanine biosynthesis
AL539_18565	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_18565	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_18570	PWY-4983	L-citrulline-nitric oxide cycle
AL539_18570	PWY-4984	urea cycle
AL539_18570	PWY-5	canavanine biosynthesis
AL539_18570	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_18570	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_18575	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_18575	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_18580	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_18580	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_18585	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_18590	PWY-1622	formaldehyde assimilation I (serine pathway)
AL539_18590	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AL539_18590	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_18590	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_18590	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AL539_18590	PWY-6549	L-glutamine biosynthesis III
AL539_18590	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AL539_18590	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AL539_18590	PWY-7124	ethylene biosynthesis V (engineered)
AL539_18600	PWY-2201	folate transformations I
AL539_18600	PWY-3841	folate transformations II
AL539_18605	PWY-2941	L-lysine biosynthesis II
AL539_18605	PWY-2942	L-lysine biosynthesis III
AL539_18605	PWY-5097	L-lysine biosynthesis VI
AL539_18605	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AL539_18605	PWY-6559	spermidine biosynthesis II
AL539_18605	PWY-6562	norspermidine biosynthesis
AL539_18605	PWY-7153	grixazone biosynthesis
AL539_18605	PWY-7977	AL539_18605
AL539_18610	PWY-801	L-homocysteine and L-cysteine interconversion
AL539_18715	PWY-7731	AL539_18715
AL539_18740	PWY-5723	Rubisco shunt
AL539_18770	PWY-5958	acridone alkaloid biosynthesis
AL539_18770	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AL539_18770	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AL539_18820	PWY-181	photorespiration
AL539_18855	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AL539_18885	PWY-2781	<i>cis</i>-zeatin biosynthesis
AL539_18910	PWY-6700	queuosine biosynthesis
AL539_18985	PWY-5669	phosphatidylethanolamine biosynthesis I
AL539_19000	PWY-1042	glycolysis IV (plant cytosol)
AL539_19000	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AL539_19000	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_19000	PWY-5723	Rubisco shunt
AL539_19000	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_19000	PWY-6886	1-butanol autotrophic biosynthesis
AL539_19000	PWY-6901	superpathway of glucose and xylose degradation
AL539_19000	PWY-7003	glycerol degradation to butanol
AL539_19000	PWY-7124	ethylene biosynthesis V (engineered)
AL539_19000	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AL539_19015	PWY-5667	CDP-diacylglycerol biosynthesis I
AL539_19015	PWY-5981	CDP-diacylglycerol biosynthesis III
AL539_19015	PWY-7902	AL539_19015
AL539_19020	PWY-6936	seleno-amino acid biosynthesis
AL539_19020	PWY-7274	D-cycloserine biosynthesis
AL539_19020	PWY-7870	AL539_19020
AL539_19050	PWY-5392	reductive TCA cycle II
AL539_19050	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_19050	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AL539_19055	PWY-3781	aerobic respiration I (cytochrome c)
AL539_19055	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AL539_19055	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AL539_19055	PWY-5690	TCA cycle II (plants and fungi)
AL539_19055	PWY-6728	methylaspartate cycle
AL539_19055	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_19055	PWY-7254	TCA cycle VII (acetate-producers)
AL539_19055	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AL539_19110	PWY-1042	glycolysis IV (plant cytosol)
AL539_19110	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AL539_19110	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_19110	PWY-7385	1,3-propanediol biosynthesis (engineered)
AL539_19135	PWY-6854	ethylene biosynthesis III (microbes)
AL539_19150	PWY-5392	reductive TCA cycle II
AL539_19150	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AL539_19150	PWY-5690	TCA cycle II (plants and fungi)
AL539_19150	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_19150	PWY-6728	methylaspartate cycle
AL539_19150	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_19150	PWY-7254	TCA cycle VII (acetate-producers)
AL539_19150	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AL539_19195	PWY-5392	reductive TCA cycle II
AL539_19195	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AL539_19195	PWY-5690	TCA cycle II (plants and fungi)
AL539_19195	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_19195	PWY-6728	methylaspartate cycle
AL539_19195	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_19195	PWY-7254	TCA cycle VII (acetate-producers)
AL539_19195	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AL539_19220	PWY-5108	L-isoleucine biosynthesis V
AL539_19220	PWY-5132	humulone biosynthesis
AL539_19220	PWY-5133	cohumulone biosynthesis
AL539_19220	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AL539_19220	PWY-7118	chitin degradation to ethanol
AL539_19220	PWY-7857	AL539_19220
AL539_19225	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AL539_19225	PWY-6416	quinate degradation II
AL539_19225	PWY-6707	gallate biosynthesis
AL539_19360	PWY-6123	inosine-5'-phosphate biosynthesis I
AL539_19360	PWY-6124	inosine-5'-phosphate biosynthesis II
AL539_19360	PWY-7234	inosine-5'-phosphate biosynthesis III
AL539_19365	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AL539_19365	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AL539_19365	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AL539_19400	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AL539_19400	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AL539_19400	PWY-7766	AL539_19400
AL539_19405	PWY-5381	pyridine nucleotide cycling (plants)
AL539_19405	PWY-7761	AL539_19405
AL539_19485	PWY-3961	phosphopantothenate biosynthesis II
AL539_19490	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AL539_19490	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AL539_19495	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AL539_19495	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AL539_19495	PWY-7953	AL539_19495
AL539_19575	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AL539_19575	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AL539_19580	PWY-6482	diphthamide biosynthesis (archaea)
AL539_19580	PWY-7546	diphthamide biosynthesis (eukaryotes)
AL539_19605	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AL539_19635	PWY-5667	CDP-diacylglycerol biosynthesis I
AL539_19635	PWY-6453	stigma estolide biosynthesis
AL539_19635	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AL539_19635	PWY-7587	oleate biosynthesis III (cyanobacteria)
AL539_19645	PWY-5755	4-hydroxybenzoate biosynthesis II (microbes)
AL539_19645	PWY-5870	ubiquinol-8 biosynthesis (eukaryotic)
AL539_19645	PWY-6148	tetrahydromethanopterin biosynthesis
AL539_19645	PWY-7742	AL539_19645
AL539_19645	PWY-7745	AL539_19645
AL539_19645	PWY-7929	AL539_19645
AL539_19645	PWY-7934	AL539_19645
AL539_19645	PWY-7935	AL539_19645
AL539_19660	PWY-5350	thiosulfate disproportionation III (rhodanese)
AL539_19660	PWY-7927	AL539_19660
AL539_19745	PWY-1042	glycolysis IV (plant cytosol)
AL539_19745	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_19745	PWY-6901	superpathway of glucose and xylose degradation
AL539_19745	PWY-7003	glycerol degradation to butanol
AL539_19810	PWY-2941	L-lysine biosynthesis II
AL539_19810	PWY-5097	L-lysine biosynthesis VI
AL539_19815	PWY-2941	L-lysine biosynthesis II
AL539_19815	PWY-2942	L-lysine biosynthesis III
AL539_19815	PWY-5097	L-lysine biosynthesis VI
AL539_19835	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AL539_19835	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AL539_19840	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AL539_19840	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AL539_19900	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AL539_19900	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AL539_19900	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AL539_19900	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AL539_19900	PWY-6978	plastoquinol-9 biosynthesis II
AL539_19910	PWY-7980	AL539_19910
AL539_19965	PWY-4041	&gamma;-glutamyl cycle
AL539_19965	PWY-4061	glutathione-mediated detoxification I
AL539_19965	PWY-5826	hypoglycin biosynthesis
AL539_19965	PWY-6842	glutathione-mediated detoxification II
AL539_19965	PWY-7112	4-hydroxy-2-nonenal detoxification
AL539_19965	PWY-7559	glutathione degradation (DUG pathway - yeast)
AL539_20020	PWY-6892	thiazole biosynthesis I (E. coli)
AL539_20020	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AL539_20025	PWY-6891	thiazole biosynthesis II (Bacillus)
AL539_20025	PWY-6892	thiazole biosynthesis I (E. coli)
AL539_20040	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AL539_20040	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AL539_20040	PWY-6897	thiamin salvage II
AL539_20040	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AL539_20040	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AL539_20040	PWY-7356	thiamin salvage IV (yeast)
AL539_20040	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AL539_20045	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AL539_20195	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AL539_20200	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AL539_20210	PWY-6123	inosine-5'-phosphate biosynthesis I
AL539_20210	PWY-7234	inosine-5'-phosphate biosynthesis III
AL539_20320	PWY-5101	L-isoleucine biosynthesis II
AL539_20320	PWY-5103	L-isoleucine biosynthesis III
AL539_20320	PWY-5104	L-isoleucine biosynthesis IV
AL539_20320	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AL539_20320	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AL539_20320	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AL539_20320	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_20330	PWY-5057	L-valine degradation II
AL539_20330	PWY-5076	L-leucine degradation III
AL539_20330	PWY-5078	L-isoleucine degradation II
AL539_20330	PWY-5101	L-isoleucine biosynthesis II
AL539_20330	PWY-5103	L-isoleucine biosynthesis III
AL539_20330	PWY-5104	L-isoleucine biosynthesis IV
AL539_20330	PWY-5108	L-isoleucine biosynthesis V
AL539_20330	PWY-7767	AL539_20330
AL539_20335	PWY-5101	L-isoleucine biosynthesis II
AL539_20335	PWY-5103	L-isoleucine biosynthesis III
AL539_20335	PWY-5104	L-isoleucine biosynthesis IV
AL539_20335	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_20365	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AL539_20375	PWY-7980	AL539_20375
AL539_20385	PWY-7980	AL539_20385
AL539_20580	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AL539_20580	PWY-6435	4-hydroxybenzoate biosynthesis V
AL539_20580	PWY-6863	pyruvate fermentation to hexanol
AL539_20580	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AL539_20580	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AL539_20580	PWY-6948	sitosterol degradation to androstenedione
AL539_20580	PWY-7094	fatty acid salvage
AL539_20580	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
AL539_20580	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
AL539_20580	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
AL539_20580	PWY-7339	10-<i>trans</i>-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
AL539_20580	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
AL539_20580	PWY-735	jasmonic acid biosynthesis
AL539_20580	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AL539_20580	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AL539_20580	PWY-7726	AL539_20580
AL539_20585	PWY-1361	benzoyl-CoA degradation I (aerobic)
AL539_20585	PWY-5109	2-methylbutanoate biosynthesis
AL539_20585	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AL539_20585	PWY-5137	fatty acid &beta;-oxidation III (unsaturated, odd number)
AL539_20585	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AL539_20585	PWY-5177	glutaryl-CoA degradation
AL539_20585	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AL539_20585	PWY-6435	4-hydroxybenzoate biosynthesis V
AL539_20585	PWY-6583	pyruvate fermentation to butanol I
AL539_20585	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
AL539_20585	PWY-6863	pyruvate fermentation to hexanol
AL539_20585	PWY-6883	pyruvate fermentation to butanol II
AL539_20585	PWY-6944	androstenedione degradation
AL539_20585	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AL539_20585	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AL539_20585	PWY-7007	methyl ketone biosynthesis
AL539_20585	PWY-7046	4-coumarate degradation (anaerobic)
AL539_20585	PWY-7094	fatty acid salvage
AL539_20585	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AL539_20585	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
AL539_20585	PWY-7292	oleate &beta;-oxidation (thioesterase-dependent, yeast)
AL539_20585	PWY-7307	oleate &beta;-oxidation (reductase-dependent, yeast)
AL539_20585	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
AL539_20585	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
AL539_20585	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
AL539_20585	PWY-735	jasmonic acid biosynthesis
AL539_20585	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AL539_20585	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AL539_20585	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AL539_20585	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AL539_20585	PWY-7726	AL539_20585
AL539_20585	PWY-7778	AL539_20585
AL539_20585	PWY-7779	AL539_20585
AL539_20645	PWY-5103	L-isoleucine biosynthesis III
AL539_20645	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_20765	PWY-5101	L-isoleucine biosynthesis II
AL539_20765	PWY-5103	L-isoleucine biosynthesis III
AL539_20765	PWY-5104	L-isoleucine biosynthesis IV
AL539_20765	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_20770	PWY-5530	sorbitol biosynthesis II
AL539_20770	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AL539_20780	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AL539_20780	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AL539_20780	PWY-7242	D-fructuronate degradation
AL539_20780	PWY-7310	D-glucosaminate degradation
AL539_20780	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AL539_20785	PWY-4202	arsenate detoxification I (glutaredoxin)
AL539_20785	PWY-5532	adenosine nucleotides degradation IV
AL539_20785	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AL539_20785	PWY-6608	guanosine nucleotides degradation III
AL539_20785	PWY-6609	adenine and adenosine salvage III
AL539_20785	PWY-6611	adenine and adenosine salvage V
AL539_20785	PWY-6620	guanine and guanosine salvage
AL539_20785	PWY-6627	salinosporamide A biosynthesis
AL539_20785	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AL539_20785	PWY-7179	purine deoxyribonucleosides degradation I
AL539_20785	PWY-7179-1	purine deoxyribonucleosides degradation
AL539_20795	PWY-4081	glutathione redox reactions I
AL539_20930	PWY-5839	menaquinol-7 biosynthesis
AL539_20930	PWY-5844	menaquinol-9 biosynthesis
AL539_20930	PWY-5849	menaquinol-6 biosynthesis
AL539_20930	PWY-5890	menaquinol-10 biosynthesis
AL539_20930	PWY-5891	menaquinol-11 biosynthesis
AL539_20930	PWY-5892	menaquinol-12 biosynthesis
AL539_20930	PWY-5895	menaquinol-13 biosynthesis
AL539_20980	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AL539_20980	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AL539_21030	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AL539_21035	PWY-6609	adenine and adenosine salvage III
AL539_21035	PWY-6611	adenine and adenosine salvage V
AL539_21035	PWY-7179	purine deoxyribonucleosides degradation I
AL539_21035	PWY-7179-1	purine deoxyribonucleosides degradation
AL539_21060	PWY-381	nitrate reduction II (assimilatory)
AL539_21060	PWY-5675	nitrate reduction V (assimilatory)
AL539_21060	PWY-6549	L-glutamine biosynthesis III
AL539_21060	PWY-6963	ammonia assimilation cycle I
AL539_21060	PWY-6964	ammonia assimilation cycle II
AL539_21100	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AL539_21100	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AL539_21195	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_21260	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AL539_21355	PWY-5686	UMP biosynthesis
AL539_21355	PWY-7790	AL539_21355
AL539_21355	PWY-7791	AL539_21355
AL539_21370	PWY-7851	AL539_21370
AL539_21420	PWY-7851	AL539_21420
AL539_21440	PWY-7039	phosphatidate metabolism, as a signaling molecule
AL539_21440	PWY-7817	AL539_21440
AL539_21445	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AL539_21445	PWY-7676	Kdo8N transfer to lipid IV<sub>A</sub>
AL539_21450	PWY-3221	dTDP-L-rhamnose biosynthesis II
AL539_21450	PWY-6808	dTDP-D-forosamine biosynthesis
AL539_21450	PWY-6942	dTDP-D-desosamine biosynthesis
AL539_21450	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AL539_21450	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AL539_21450	PWY-6974	dTDP-L-olivose biosynthesis
AL539_21450	PWY-6976	dTDP-L-mycarose biosynthesis
AL539_21450	PWY-7104	dTDP-L-megosamine biosynthesis
AL539_21450	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AL539_21450	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AL539_21450	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AL539_21450	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AL539_21450	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AL539_21450	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AL539_21450	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AL539_21450	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AL539_21450	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AL539_21450	PWY-7688	AL539_21450
AL539_21450	PWY-7814	AL539_21450
AL539_21455	PWY-3221	dTDP-L-rhamnose biosynthesis II
AL539_21455	PWY-6808	dTDP-D-forosamine biosynthesis
AL539_21455	PWY-6942	dTDP-D-desosamine biosynthesis
AL539_21455	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AL539_21455	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AL539_21455	PWY-6974	dTDP-L-olivose biosynthesis
AL539_21455	PWY-6976	dTDP-L-mycarose biosynthesis
AL539_21455	PWY-7104	dTDP-L-megosamine biosynthesis
AL539_21455	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AL539_21455	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AL539_21455	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AL539_21455	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AL539_21455	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AL539_21455	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AL539_21455	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AL539_21455	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AL539_21455	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AL539_21455	PWY-7688	AL539_21455
AL539_21455	PWY-7814	AL539_21455
AL539_21490	PWY-7675	Kdo transfer to lipid IV<sub>A</sub> II
AL539_21545	PWY-3221	dTDP-L-rhamnose biosynthesis II
AL539_21545	PWY-6808	dTDP-D-forosamine biosynthesis
AL539_21545	PWY-6942	dTDP-D-desosamine biosynthesis
AL539_21545	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AL539_21545	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AL539_21545	PWY-6974	dTDP-L-olivose biosynthesis
AL539_21545	PWY-6976	dTDP-L-mycarose biosynthesis
AL539_21545	PWY-7104	dTDP-L-megosamine biosynthesis
AL539_21545	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AL539_21545	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AL539_21545	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AL539_21545	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AL539_21545	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AL539_21545	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AL539_21545	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AL539_21545	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AL539_21545	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AL539_21545	PWY-7688	AL539_21545
AL539_21545	PWY-7814	AL539_21545
AL539_21550	PWY-3221	dTDP-L-rhamnose biosynthesis II
AL539_21550	PWY-6808	dTDP-D-forosamine biosynthesis
AL539_21550	PWY-6942	dTDP-D-desosamine biosynthesis
AL539_21550	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AL539_21550	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AL539_21550	PWY-6974	dTDP-L-olivose biosynthesis
AL539_21550	PWY-6976	dTDP-L-mycarose biosynthesis
AL539_21550	PWY-7104	dTDP-L-megosamine biosynthesis
AL539_21550	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AL539_21550	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AL539_21550	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AL539_21550	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AL539_21550	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AL539_21550	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AL539_21550	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AL539_21550	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AL539_21550	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AL539_21550	PWY-7688	AL539_21550
AL539_21550	PWY-7814	AL539_21550
AL539_21620	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AL539_21620	PWY-7820	AL539_21620
AL539_21635	PWY-1042	glycolysis IV (plant cytosol)
AL539_21635	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_21635	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_21635	PWY-7003	glycerol degradation to butanol
AL539_21660	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_21675	PWY-5839	menaquinol-7 biosynthesis
AL539_21675	PWY-5851	demethylmenaquinol-9 biosynthesis
AL539_21675	PWY-5852	demethylmenaquinol-8 biosynthesis I
AL539_21675	PWY-5853	demethylmenaquinol-6 biosynthesis I
AL539_21675	PWY-5890	menaquinol-10 biosynthesis
AL539_21675	PWY-5891	menaquinol-11 biosynthesis
AL539_21675	PWY-5892	menaquinol-12 biosynthesis
AL539_21675	PWY-5895	menaquinol-13 biosynthesis
AL539_21925	PWY-5194	siroheme biosynthesis
AL539_21925	PWY-5196	factor 430 biosynthesis
AL539_21925	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AL539_21930	PWY-5278	sulfite oxidation III
AL539_21930	PWY-5340	sulfate activation for sulfonation
AL539_21930	PWY-6683	sulfate reduction III (assimilatory)
AL539_21930	PWY-6932	selenate reduction
AL539_21935	PWY-5278	sulfite oxidation III
AL539_21935	PWY-5340	sulfate activation for sulfonation
AL539_21935	PWY-6683	sulfate reduction III (assimilatory)
AL539_21935	PWY-6932	selenate reduction
AL539_21945	PWY-5340	sulfate activation for sulfonation
AL539_22060	PWY-7805	AL539_22060
AL539_22060	PWY-7807	AL539_22060
AL539_22065	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_22075	PWY-7883	AL539_22075
AL539_22140	PWY-1622	formaldehyde assimilation I (serine pathway)
AL539_22140	PWY-5392	reductive TCA cycle II
AL539_22140	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AL539_22140	PWY-5690	TCA cycle II (plants and fungi)
AL539_22140	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_22140	PWY-6728	methylaspartate cycle
AL539_22140	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_22140	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AL539_22140	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_22180	PWY-3841	folate transformations II
AL539_22180	PWY-6614	tetrahydrofolate biosynthesis
AL539_22235	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AL539_22240	PWY-6871	3-methylbutanol biosynthesis
AL539_22275	PWY-5101	L-isoleucine biosynthesis II
AL539_22275	PWY-5103	L-isoleucine biosynthesis III
AL539_22275	PWY-5104	L-isoleucine biosynthesis IV
AL539_22275	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AL539_22275	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AL539_22275	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AL539_22275	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_22280	PWY-5101	L-isoleucine biosynthesis II
AL539_22280	PWY-5103	L-isoleucine biosynthesis III
AL539_22280	PWY-5104	L-isoleucine biosynthesis IV
AL539_22280	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AL539_22280	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AL539_22280	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AL539_22280	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AL539_22295	PWY-1042	glycolysis IV (plant cytosol)
AL539_22295	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AL539_22295	PWY-5484	glycolysis II (from fructose 6-phosphate)
AL539_22295	PWY-5723	Rubisco shunt
AL539_22295	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AL539_22295	PWY-6886	1-butanol autotrophic biosynthesis
AL539_22295	PWY-6901	superpathway of glucose and xylose degradation
AL539_22295	PWY-7003	glycerol degradation to butanol
AL539_22295	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AL539_22295	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AL539_22305	PWY-6749	CMP-legionaminate biosynthesis I
AL539_22360	PWY-6349	CDP-archaeol biosynthesis
AL539_22390	PWY-6531	mannitol cycle
AL539_22560	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AL539_22560	PWY-6148	tetrahydromethanopterin biosynthesis
AL539_22560	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AL539_22560	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AL539_22565	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AL539_22565	PWY-6148	tetrahydromethanopterin biosynthesis
AL539_22565	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AL539_22565	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AL539_22565	PWY-7852	AL539_22565
AL539_22565	PWY-7853	AL539_22565
AL539_22570	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AL539_22590	PWY-4041	&gamma;-glutamyl cycle
AL539_22590	PWY-4061	glutathione-mediated detoxification I
AL539_22590	PWY-5826	hypoglycin biosynthesis
AL539_22590	PWY-6842	glutathione-mediated detoxification II
AL539_22590	PWY-7112	4-hydroxy-2-nonenal detoxification
AL539_22590	PWY-7559	glutathione degradation (DUG pathway - yeast)
AL539_22710	PWY-3781	aerobic respiration I (cytochrome c)
AL539_22710	PWY-6692	Fe(II) oxidation
AL539_22710	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AL539_22710	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AL539_22740	PWY-6478	GDP-D-<i>glycero</i>-&alpha;-D-<i>manno</i>-heptose biosynthesis
AL539_22780	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_22780	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_22790	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AL539_22790	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AL539_22790	PWY-7953	AL539_22790
AL539_22795	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_22795	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AL539_22795	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_22800	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AL539_22800	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AL539_22805	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_22805	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AL539_22805	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AL539_22805	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_22810	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_22810	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AL539_22810	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AL539_22810	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_22815	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AL539_22815	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AL539_22815	PWY-7953	AL539_22815
AL539_22850	PWY-6502	oxidized GTP and dGTP detoxification
AL539_22855	PWY-2941	L-lysine biosynthesis II
AL539_22855	PWY-2942	L-lysine biosynthesis III
AL539_22855	PWY-5097	L-lysine biosynthesis VI
AL539_22860	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_22860	PWY-5686	UMP biosynthesis
AL539_22860	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_22860	PWY-7790	AL539_22860
AL539_22860	PWY-7791	AL539_22860
AL539_22865	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AL539_22865	PWY-5686	UMP biosynthesis
AL539_22865	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AL539_22865	PWY-7790	AL539_22865
AL539_22865	PWY-7791	AL539_22865
AL539_22905	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AL539_22905	PWY-6153	autoinducer AI-2 biosynthesis I
AL539_22905	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
AL539_22985	PWY-2941	L-lysine biosynthesis II
AL539_22985	PWY-2942	L-lysine biosynthesis III
AL539_22985	PWY-5097	L-lysine biosynthesis VI
AL539_22985	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AL539_22985	PWY-6559	spermidine biosynthesis II
AL539_22985	PWY-6562	norspermidine biosynthesis
AL539_22985	PWY-7153	grixazone biosynthesis
AL539_22985	PWY-7977	AL539_22985
AL539_22990	PWY-702	L-methionine biosynthesis II
AL539_23075	PWY-7805	AL539_23075
AL539_23075	PWY-7807	AL539_23075
AL539_23135	PWY-3841	folate transformations II
AL539_23135	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AL539_23135	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_23135	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AL539_23135	PWY-7199	pyrimidine deoxyribonucleosides salvage
AL539_23135	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AL539_23170	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AL539_23170	PWY-6167	flavin biosynthesis II (archaea)
AL539_23170	PWY-6168	flavin biosynthesis III (fungi)
AL539_23170	PWY-7863	AL539_23170
AL539_23180	PWY-7884	AL539_23180
AL539_23190	PWY-7560	methylerythritol phosphate pathway II
AL539_23230	PWY-7883	AL539_23230
AL539_23235	PWY-6902	chitin degradation II
AL539_23235	PWY-7822	AL539_23235
AL539_23235	PWY-7883	AL539_23235
AL539_23240	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AL539_23240	PWY-6164	3-dehydroquinate biosynthesis I
AL539_23240	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AL539_23245	PWY-3461	L-tyrosine biosynthesis II
AL539_23245	PWY-3462	L-phenylalanine biosynthesis II
AL539_23245	PWY-6120	L-tyrosine biosynthesis III
AL539_23245	PWY-6627	salinosporamide A biosynthesis
AL539_23245	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AL539_23245	PWY-7626	bacilysin biosynthesis
AL539_23280	PWY-3461	L-tyrosine biosynthesis II
AL539_23280	PWY-3462	L-phenylalanine biosynthesis II
AL539_23280	PWY-6120	L-tyrosine biosynthesis III
AL539_23280	PWY-6627	salinosporamide A biosynthesis
AL539_23280	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AL539_23280	PWY-7626	bacilysin biosynthesis
AL539_23460	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_23460	PWY-7118	chitin degradation to ethanol
AL539_23460	PWY-7294	xylose degradation IV
AL539_23460	PWY-7295	L-arabinose degradation IV
AL539_23460	PWY-7854	AL539_23460
AL539_23465	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_23480	PWY-6700	queuosine biosynthesis
AL539_23485	PWY-6700	queuosine biosynthesis
AL539_23515	PWY-2301	<i>myo</i>-inositol biosynthesis
AL539_23515	PWY-4702	phytate degradation I
AL539_23515	PWY-6363	D-<i>myo</i>-inositol (1,4,5)-trisphosphate degradation
AL539_23530	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AL539_23570	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AL539_23570	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AL539_23570	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AL539_23570	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_23570	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AL539_23570	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AL539_23570	PWY-7205	CMP phosphorylation
AL539_23570	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AL539_23570	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_23570	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AL539_23570	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AL539_23570	PWY-7224	purine deoxyribonucleosides salvage
AL539_23570	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AL539_23570	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AL539_23625	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AL539_23625	PWY-6596	adenosine nucleotides degradation I
AL539_23625	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AL539_23630	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AL539_23640	PWY-6855	chitin degradation I (archaea)
AL539_23640	PWY-6902	chitin degradation II
AL539_23640	PWY-7822	AL539_23640
AL539_23975	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AL539_23975	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AL539_23975	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AL539_24045	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AL539_24045	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AL539_24045	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AL539_24100	PWY-3341	L-proline biosynthesis III
AL539_24100	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AL539_24105	PWY-3341	L-proline biosynthesis III
AL539_24105	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AL539_24115	PWY-7991	AL539_24115
AL539_24120	PWY-6167	flavin biosynthesis II (archaea)
AL539_24120	PWY-6168	flavin biosynthesis III (fungi)
AL539_24120	PWY-7980	AL539_24120
AL539_24125	PWY-6167	flavin biosynthesis II (archaea)
AL539_24125	PWY-6168	flavin biosynthesis III (fungi)
AL539_24125	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AL539_24125	PWY-7991	AL539_24125
AL539_24130	PWY-6167	flavin biosynthesis II (archaea)
AL539_24130	PWY-6168	flavin biosynthesis III (fungi)
AL539_24140	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AL539_24140	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AL539_24140	PWY-6896	thiamin salvage I
AL539_24140	PWY-6897	thiamin salvage II
AL539_24145	PWY-5269	cardiolipin biosynthesis II
AL539_24145	PWY-5668	cardiolipin biosynthesis I
AL539_24145	PWY-7817	AL539_24145
AL539_24150	PWY-6891	thiazole biosynthesis II (Bacillus)
AL539_24150	PWY-6892	thiazole biosynthesis I (E. coli)
AL539_24150	PWY-7560	methylerythritol phosphate pathway II
AL539_24205	PWY-6617	adenosine nucleotides degradation III
AL539_24205	PWY-7569	arginomycin biosynthesis
AL539_24205	PWY-7570	blasticidin S biosynthesis
AL539_24220	PWY-6700	queuosine biosynthesis
AL539_24285	PWY-1622	formaldehyde assimilation I (serine pathway)
AL539_24285	PWY-181	photorespiration
AL539_24285	PWY-2161	folate polyglutamylation
AL539_24285	PWY-2201	folate transformations I
AL539_24285	PWY-3661	glycine betaine degradation I
AL539_24285	PWY-3661-1	glycine betaine degradation II (mammalian)
AL539_24285	PWY-3841	folate transformations II
AL539_24285	PWY-5497	purine nucleobases degradation II (anaerobic)
AL539_24290	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AL539_24290	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AL539_24295	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AL539_24295	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AL539_24305	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_24305	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_24315	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_24315	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AL539_24315	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AL539_24315	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_24320	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AL539_24320	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AL539_24500	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AL539_24510	PWY-7560	methylerythritol phosphate pathway II
AL539_24520	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AL539_24545	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AL539_24545	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AL539_24590	PWY-6902	chitin degradation II
AL539_24590	PWY-7822	AL539_24590
AL539_24590	PWY-7883	AL539_24590
AL539_24625	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AL539_24780	PWY-6936	seleno-amino acid biosynthesis
AL539_24895	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AL539_24930	PWY-6906	chitin derivatives degradation
AL539_24930	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AL539_24930	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AL539_24980	PWY-2723	trehalose degradation V
AL539_24980	PWY-3801	sucrose degradation II (sucrose synthase)
AL539_24980	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AL539_24980	PWY-5661	GDP-glucose biosynthesis
AL539_24980	PWY-5940	streptomycin biosynthesis
AL539_24980	PWY-5941	glycogen degradation II (eukaryotic)
AL539_24980	PWY-622	starch biosynthesis
AL539_24980	PWY-6317	galactose degradation I (Leloir pathway)
AL539_24980	PWY-6731	starch degradation III
AL539_24980	PWY-6737	starch degradation V
AL539_24980	PWY-6749	CMP-legionaminate biosynthesis I
AL539_24980	PWY-6981	chitin biosynthesis
AL539_24980	PWY-7238	sucrose biosynthesis II
AL539_24980	PWY-7343	UDP-glucose biosynthesis
AL539_24980	PWY-7900	AL539_24980
AL539_24980	PWY-7902	AL539_24980
AL539_25010	PWY-3781	aerobic respiration I (cytochrome c)
AL539_25010	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AL539_25010	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AL539_25010	PWY-5690	TCA cycle II (plants and fungi)
AL539_25010	PWY-6728	methylaspartate cycle
AL539_25010	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_25010	PWY-7254	TCA cycle VII (acetate-producers)
AL539_25010	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AL539_25015	PWY-3781	aerobic respiration I (cytochrome c)
AL539_25015	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AL539_25015	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AL539_25015	PWY-5690	TCA cycle II (plants and fungi)
AL539_25015	PWY-6728	methylaspartate cycle
AL539_25015	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_25015	PWY-7254	TCA cycle VII (acetate-producers)
AL539_25015	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AL539_25020	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AL539_25025	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AL539_25030	PWY-5392	reductive TCA cycle II
AL539_25030	PWY-5537	pyruvate fermentation to acetate V
AL539_25030	PWY-5538	pyruvate fermentation to acetate VI
AL539_25030	PWY-5690	TCA cycle II (plants and fungi)
AL539_25030	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_25030	PWY-6728	methylaspartate cycle
AL539_25030	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_25030	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AL539_25035	PWY-5392	reductive TCA cycle II
AL539_25035	PWY-5537	pyruvate fermentation to acetate V
AL539_25035	PWY-5538	pyruvate fermentation to acetate VI
AL539_25035	PWY-5690	TCA cycle II (plants and fungi)
AL539_25035	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_25035	PWY-6728	methylaspartate cycle
AL539_25035	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_25035	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AL539_25100	PWY-2201	folate transformations I
AL539_25100	PWY-5497	purine nucleobases degradation II (anaerobic)
AL539_25100	PWY-7909	AL539_25100
AL539_25175	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AL539_25175	PWY-2201	folate transformations I
AL539_25175	PWY-3841	folate transformations II
AL539_25175	PWY-5030	L-histidine degradation III
AL539_25175	PWY-5497	purine nucleobases degradation II (anaerobic)
AL539_25175	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AL539_25175	PWY-7909	AL539_25175
AL539_25190	PWY-5367	petroselinate biosynthesis
AL539_25190	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AL539_25190	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AL539_25190	PWY-5989	stearate biosynthesis II (bacteria and plants)
AL539_25190	PWY-5994	palmitate biosynthesis I (animals and fungi)
AL539_25190	PWY-6113	superpathway of mycolate biosynthesis
AL539_25190	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AL539_25190	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_25190	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AL539_25190	PWY-7663	gondoate biosynthesis (anaerobic)
AL539_25190	PWY-7664	oleate biosynthesis IV (anaerobic)
AL539_25190	PWY-7858	AL539_25190
AL539_25190	PWYG-321	mycolate biosynthesis
AL539_25235	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AL539_25235	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AL539_25235	PWY-5989	stearate biosynthesis II (bacteria and plants)
AL539_25235	PWY-5994	palmitate biosynthesis I (animals and fungi)
AL539_25235	PWY-6113	superpathway of mycolate biosynthesis
AL539_25235	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AL539_25235	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AL539_25235	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AL539_25235	PWY-7663	gondoate biosynthesis (anaerobic)
AL539_25235	PWY-7664	oleate biosynthesis IV (anaerobic)
AL539_25235	PWY-7858	AL539_25235
AL539_25235	PWYG-321	mycolate biosynthesis
AL539_25415	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AL539_25415	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AL539_25415	PWY-6406	salicylate biosynthesis I
AL539_25420	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AL539_25425	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AL539_25430	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AL539_25435	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AL539_25440	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AL539_25585	PWY-4202	arsenate detoxification I (glutaredoxin)
AL539_25585	PWY-5532	adenosine nucleotides degradation IV
AL539_25585	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AL539_25585	PWY-6608	guanosine nucleotides degradation III
AL539_25585	PWY-6609	adenine and adenosine salvage III
AL539_25585	PWY-6611	adenine and adenosine salvage V
AL539_25585	PWY-6620	guanine and guanosine salvage
AL539_25585	PWY-6627	salinosporamide A biosynthesis
AL539_25585	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AL539_25585	PWY-7179	purine deoxyribonucleosides degradation I
AL539_25585	PWY-7179-1	purine deoxyribonucleosides degradation
AL539_25620	PWY-6896	thiamin salvage I
AL539_25695	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AL539_25740	PWY-5480	pyruvate fermentation to ethanol I
AL539_25740	PWY-5485	pyruvate fermentation to acetate IV
AL539_25740	PWY-5493	reductive monocarboxylic acid cycle
AL539_25825	PWY-5913	TCA cycle VI (obligate autotrophs)
AL539_25825	PWY-6549	L-glutamine biosynthesis III
AL539_25825	PWY-6728	methylaspartate cycle
AL539_25825	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AL539_25825	PWY-7124	ethylene biosynthesis V (engineered)
AL539_25825	PWY-7254	TCA cycle VII (acetate-producers)
AL539_25825	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AL539_25850	PWY-7802	AL539_25850
AL539_25855	PWY-7801	AL539_25855
AL539_25865	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AL539_25880	PWY-622	starch biosynthesis
AL539_25880	PWY-7902	AL539_25880
AL539_25885	PWY-622	starch biosynthesis
AL539_25955	PWY-6840	homoglutathione biosynthesis
AL539_25955	PWY-7255	ergothioneine biosynthesis I (bacteria)
AL539_26025	PWY-7545	pyruvate to cytochrome <i>bd</i> terminal oxidase electron transfer
AL539_26070	PWY-5316	nicotine biosynthesis
AL539_26070	PWY-7342	superpathway of nicotine biosynthesis
