AL539_00005	PF05936	AL539_00005
AL539_00010	PF00691	OmpA family
AL539_00010	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AL539_00015	PF06744	AL539_00015
AL539_00015	PF06761	AL539_00015
AL539_00015	PF14331	AL539_00015
AL539_00020	PF09867	Uncharacterized protein conserved in bacteria (DUF2094)
AL539_00025	PF13672	Protein phosphatase 2C
AL539_00030	PF06812	AL539_00030
AL539_00035	PF05591	AL539_00035
AL539_00040	PF05943	AL539_00040
AL539_00045	PF05943	AL539_00045
AL539_00050	PF07024	ImpE protein
AL539_00055	PF04965	Gene 25-like lysozyme
AL539_00060	PF05947	AL539_00060
AL539_00065	PF06996	AL539_00065
AL539_00070	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_00070	PF07724	AAA domain (Cdc48 subfamily)
AL539_00070	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_00075	PF05638	Protein of unknown function (DUF796)
AL539_00080	PF05954	Phage late control gene D protein (GPD)
AL539_00085	PF05488	PAAR motif
AL539_00095	PF00149	Calcineurin-like phosphoesterase
AL539_00095	PF12320	Type 5 capsule protein repressor C-terminal domain
AL539_00100	PF13476	AAA domain
AL539_00100	PF13558	Putative exonuclease SbcCD, C subunit
AL539_00105	PF00031	Cystatin domain
AL539_00110	PF08212	Lipocalin-like domain
AL539_00115	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_00120	PF03606	AL539_00120
AL539_00125	PF00034	Cytochrome c
AL539_00130	PF01212	Beta-eliminating lyase
AL539_00135	PF00293	NUDIX domain
AL539_00140	PF07728	AAA domain (dynein-related subfamily)
AL539_00140	PF12592	Protein of unknown function (DUF3763)
AL539_00145	PF05762	VWA domain containing CoxE-like protein
AL539_00160	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_00160	PF03466	LysR substrate binding domain
AL539_00165	PF01565	FAD binding domain
AL539_00165	PF09330	D-lactate dehydrogenase, membrane binding
AL539_00170	PF05437	AL539_00170
AL539_00175	PF03591	AL539_00175
AL539_00180	PF00842	Alanine racemase, C-terminal domain
AL539_00180	PF01168	Alanine racemase, N-terminal domain
AL539_00185	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_00185	PF12729	AL539_00185
AL539_00200	PF00128	Alpha amylase, catalytic domain
AL539_00210	PF01764	Lipase (class 3)
AL539_00215	PF05235	CHAD domain
AL539_00235	PF00296	Luciferase-like monooxygenase
AL539_00240	PF00990	GGDEF domain
AL539_00245	PF09084	NMT1/THI5 like
AL539_00250	PF00990	GGDEF domain
AL539_00250	PF08447	PAS fold
AL539_00260	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_00260	PF14760	Rnk N-terminus
AL539_00265	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL539_00265	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL539_00265	PF04324	BFD-like [2Fe-2S] binding domain
AL539_00265	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_00270	PF13806	Rieske-like [2Fe-2S] domain
AL539_00275	PF01226	Formate/nitrite transporter
AL539_00280	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL539_00285	PF13778	AL539_00285
AL539_00290	PF01936	NYN domain
AL539_00295	PF03605	AL539_00295
AL539_00305	PF11575	AL539_00305
AL539_00310	PF00593	TonB dependent receptor
AL539_00310	PF07715	TonB-dependent Receptor Plug Domain
AL539_00315	PF11661	AL539_00315
AL539_00320	PF13302	Acetyltransferase (GNAT) domain
AL539_00325	PF11756	AL539_00325
AL539_00330	PF07690	Major Facilitator Superfamily
AL539_00335	PF00085	Thioredoxin
AL539_00340	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL539_00340	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL539_00345	PF07394	AL539_00345
AL539_00350	PF08811	AL539_00350
AL539_00355	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
AL539_00360	PF01238	Phosphomannose isomerase type I
AL539_00365	PF07690	Major Facilitator Superfamily
AL539_00370	PF05231	AL539_00370
AL539_00370	PF07730	Histidine kinase
AL539_00375	PF00072	Response regulator receiver domain
AL539_00375	PF00196	Bacterial regulatory proteins, luxR family
AL539_00380	PF07690	Major Facilitator Superfamily
AL539_00385	PF02634	FdhD/NarQ family
AL539_00390	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_00390	PF03466	LysR substrate binding domain
AL539_00400	PF00384	Molybdopterin oxidoreductase
AL539_00400	PF01568	Molydopterin dinucleotide binding domain
AL539_00405	PF10517	AL539_00405
AL539_00410	PF04224	AL539_00410
AL539_00415	PF02567	Phenazine biosynthesis-like protein
AL539_00420	PF01177	Asp/Glu/Hydantoin racemase
AL539_00425	PF00581	Rhodanese-like domain
AL539_00425	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_00425	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_00430	PF01022	Bacterial regulatory protein, arsR family
AL539_00435	PF04143	AL539_00435
AL539_00445	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_00455	PF03477	ATP cone domain
AL539_00455	PF13597	Anaerobic ribonucleoside-triphosphate reductase
AL539_00460	PF13353	4Fe-4S single cluster domain
AL539_00465	PF01554	MatE
AL539_00470	PF02311	AraC-like ligand binding domain
AL539_00470	PF12833	Helix-turn-helix domain
AL539_00475	PF00155	Aminotransferase class I and II
AL539_00480	PF05618	Putative ATP-dependant zinc protease
AL539_00490	PF04076	Bacterial OB fold (BOF) protein
AL539_00495	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AL539_00495	PF13500	AAA domain
AL539_00500	PF13531	Bacterial extracellular solute-binding protein
AL539_00505	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_00510	PF00005	ABC transporter
AL539_00510	PF03459	TOBE domain
AL539_00515	PF11269	Protein of unknown function (DUF3069)
AL539_00520	PF00072	Response regulator receiver domain
AL539_00520	PF00990	GGDEF domain
AL539_00525	PF00990	GGDEF domain
AL539_00530	PF10719	AL539_00530
AL539_00535	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AL539_00540	PF13358	DDE superfamily endonuclease
AL539_00540	PF13565	AL539_00540
AL539_00550	PF10115	AL539_00550
AL539_00555	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL539_00555	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL539_00555	PF12769	Domain of unknown function (DUF3814)
AL539_00560	PF02233	NAD(P) transhydrogenase beta subunit
AL539_00565	PF00512	His Kinase A (phospho-acceptor) domain
AL539_00565	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_00565	PF11884	Domain of unknown function (DUF3404)
AL539_00570	PF00072	Response regulator receiver domain
AL539_00570	PF00486	Transcriptional regulatory protein, C terminal
AL539_00575	PF11060	AL539_00575
AL539_00580	PF13729	AL539_00580
AL539_00585	PF03701	AL539_00585
AL539_00590	PF00582	Universal stress protein family
AL539_00600	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_00600	PF03466	LysR substrate binding domain
AL539_00620	PF01253	Translation initiation factor SUI1
AL539_00625	PF11782	AL539_00625
AL539_00630	PF01820	D-ala D-ala ligase N-terminus
AL539_00630	PF07478	D-ala D-ala ligase C-terminus
AL539_00635	PF05036	Sporulation related domain
AL539_00640	PF00583	Acetyltransferase (GNAT) family
AL539_00640	PF13380	CoA binding domain
AL539_00640	PF13549	ATP-grasp domain
AL539_00640	PF13607	Succinyl-CoA ligase like flavodoxin domain
AL539_00645	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_00645	PF03466	LysR substrate binding domain
AL539_00650	PF00593	TonB dependent receptor
AL539_00650	PF07715	TonB-dependent Receptor Plug Domain
AL539_00660	PF16363	AL539_00660
AL539_00665	PF00672	HAMP domain
AL539_00665	PF00989	PAS fold
AL539_00665	PF00990	GGDEF domain
AL539_00665	PF13426	PAS domain
AL539_00665	PF17152	AL539_00665
AL539_00670	PF03746	LamB/YcsF family
AL539_00675	PF02682	Allophanate hydrolase subunit 1
AL539_00680	PF02626	Allophanate hydrolase subunit 2
AL539_00685	PF01266	FAD dependent oxidoreductase
AL539_00695	PF00005	ABC transporter
AL539_00700	PF13472	GDSL-like Lipase/Acylhydrolase family
AL539_00705	PF07055	Enoyl reductase FAD binding domain
AL539_00705	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL539_00705	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL539_00710	PF00563	EAL domain
AL539_00710	PF00990	GGDEF domain
AL539_00710	PF13185	GAF domain
AL539_00715	PF09818	Predicted ATPase of the ABC class
AL539_00720	PF00226	DnaJ domain
AL539_00720	PF12339	AL539_00720
AL539_00725	PF03171	2OG-Fe(II) oxygenase superfamily
AL539_00725	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
AL539_00730	PF09997	AL539_00730
AL539_00735	PF03091	CutA1 divalent ion tolerance protein
AL539_00745	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_00745	PF12793	AL539_00745
AL539_00750	PF11869	AL539_00750
AL539_00755	PF03061	Thioesterase superfamily
AL539_00760	PF01435	Peptidase family M48
AL539_00770	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_00775	PF12262	AL539_00775
AL539_00780	PF06004	Bacterial protein of unknown function (DUF903)
AL539_00785	PF03831	PhnA protein
AL539_00785	PF08274	PhnA Zinc-Ribbon
AL539_00795	PF03741	AL539_00795
AL539_00800	PF00149	Calcineurin-like phosphoesterase
AL539_00800	PF02872	5'-nucleotidase, C-terminal domain
AL539_00805	PF11398	Protein of unknown function (DUF2813)
AL539_00810	PF06496	AL539_00810
AL539_00815	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_00815	PF03466	LysR substrate binding domain
AL539_00820	PF00571	CBS domain
AL539_00820	PF01226	Formate/nitrite transporter
AL539_00825	PF04264	YceI-like domain
AL539_00830	PF01292	Prokaryotic cytochrome b561
AL539_00835	PF09932	AL539_00835
AL539_00845	PF00563	EAL domain
AL539_00850	PF00270	DEAD/DEAH box helicase
AL539_00850	PF00271	Helicase conserved C-terminal domain
AL539_00855	PF04336	AL539_00855
AL539_00865	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_00875	PF13419	Haloacid dehalogenase-like hydrolase
AL539_00885	PF05981	AL539_00885
AL539_00890	PF00294	pfkB family carbohydrate kinase
AL539_00895	PF01268	Formate--tetrahydrofolate ligase
AL539_00900	PF00483	Nucleotidyl transferase
AL539_00905	PF00704	Glycosyl hydrolases family 18
AL539_00905	PF06483	AL539_00905
AL539_00905	PF14600	Cellulose-binding domain
AL539_00915	PF06719	AL539_00915
AL539_00915	PF12833	Helix-turn-helix domain
AL539_00920	PF00465	Iron-containing alcohol dehydrogenase
AL539_00925	PF07947	AL539_00925
AL539_00930	PF00005	ABC transporter
AL539_00935	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_00940	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_00945	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_00950	PF00563	EAL domain
AL539_00955	PF13275	S4 domain
AL539_00960	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_00965	PF00356	Bacterial regulatory proteins, lacI family
AL539_00965	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL539_00970	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_00970	PF00381	PTS HPr component phosphorylation site
AL539_00975	PF00294	pfkB family carbohydrate kinase
AL539_00980	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_00980	PF02378	Phosphotransferase system, EIIC
AL539_00990	PF00873	AcrB/AcrD/AcrF family
AL539_00995	PF13533	Biotin-lipoyl like
AL539_01000	PF16576	AL539_01000
AL539_01005	PF00440	Bacterial regulatory proteins, tetR family
AL539_01010	PF01571	Aminomethyltransferase folate-binding domain
AL539_01010	PF08669	Glycine cleavage T-protein C-terminal barrel domain
AL539_01015	PF01381	Helix-turn-helix
AL539_01015	PF07883	Cupin domain
AL539_01020	PF00464	Serine hydroxymethyltransferase
AL539_01025	PF01597	Glycine cleavage H-protein
AL539_01030	PF02347	Glycine cleavage system P-protein
AL539_01035	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_01045	PF00753	Metallo-beta-lactamase superfamily
AL539_01050	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_01050	PF03466	LysR substrate binding domain
AL539_01055	PF00892	EamA-like transporter family
AL539_01060	PF02627	Carboxymuconolactone decarboxylase family
AL539_01065	PF12833	Helix-turn-helix domain
AL539_01070	PF14317	AL539_01070
AL539_01075	PF16691	AL539_01075
AL539_01080	PF01212	Beta-eliminating lyase
AL539_01085	PF15575	AL539_01085
AL539_01090	PF00929	Exonuclease
AL539_01100	PF00005	ABC transporter
AL539_01100	PF00664	ABC transporter transmembrane region
AL539_01110	PF04307	AL539_01110
AL539_01120	PF02253	Phospholipase A1
AL539_01125	PF11158	AL539_01125
AL539_01130	PF01609	Transposase DDE domain
AL539_01130	PF14104	AL539_01130
AL539_01135	PF13411	MerR HTH family regulatory protein
AL539_01140	PF01327	Polypeptide deformylase
AL539_01165	PF13521	AAA domain
AL539_01175	PF01769	Divalent cation transporter
AL539_01175	PF03448	MgtE intracellular N domain
AL539_01180	PF00582	Universal stress protein family
AL539_01185	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL539_01190	PF03061	Thioesterase superfamily
AL539_01195	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_01200	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_01205	PF03206	AL539_01205
AL539_01210	PF01757	AL539_01210
AL539_01215	PF08808	AL539_01215
AL539_01220	PF09722	AL539_01220
AL539_01225	PF00141	Peroxidase
AL539_01230	PF01645	Conserved region in glutamate synthase
AL539_01230	PF09360	Iron-binding zinc finger CDGSH type
AL539_01235	PF04073	Aminoacyl-tRNA editing domain
AL539_01240	PF00171	Aldehyde dehydrogenase family
AL539_01245	PF13302	Acetyltransferase (GNAT) domain
AL539_01250	PF00293	NUDIX domain
AL539_01255	PF00892	EamA-like transporter family
AL539_01260	PF00893	Small Multidrug Resistance protein
AL539_01265	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_01275	PF01124	MAPEG family
AL539_01280	PF00892	EamA-like transporter family
AL539_01285	PF01925	AL539_01285
AL539_01290	PF07963	Prokaryotic N-terminal methylation motif
AL539_01295	PF00072	Response regulator receiver domain
AL539_01295	PF01584	CheW-like domain
AL539_01305	PF00072	Response regulator receiver domain
AL539_01305	PF00196	Bacterial regulatory proteins, luxR family
AL539_01310	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_01315	PF00990	GGDEF domain
AL539_01320	PF00072	Response regulator receiver domain
AL539_01320	PF00196	Bacterial regulatory proteins, luxR family
AL539_01325	PF00072	Response regulator receiver domain
AL539_01325	PF00563	EAL domain
AL539_01330	PF00072	Response regulator receiver domain
AL539_01330	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_01330	PF00512	His Kinase A (phospho-acceptor) domain
AL539_01330	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_01335	PF01926	50S ribosome-binding GTPase
AL539_01340	PF00155	Aminotransferase class I and II
AL539_01345	PF00072	Response regulator receiver domain
AL539_01345	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_01350	PF13419	Haloacid dehalogenase-like hydrolase
AL539_01355	PF00583	Acetyltransferase (GNAT) family
AL539_01360	PF00487	AL539_01360
AL539_01365	PF03606	AL539_01365
AL539_01375	PF07690	Major Facilitator Superfamily
AL539_01380	PF08774	VRR-NUC domain
AL539_01385	PF13505	Outer membrane protein beta-barrel domain
AL539_01390	PF04076	Bacterial OB fold (BOF) protein
AL539_01395	PF00781	Diacylglycerol kinase catalytic domain
AL539_01400	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_01400	PF03466	LysR substrate binding domain
AL539_01405	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_01410	PF13584	AL539_01410
AL539_01415	PF13519	von Willebrand factor type A domain
AL539_01420	PF00092	von Willebrand factor type A domain
AL539_01425	PF14316	AL539_01425
AL539_01430	PF01882	AL539_01430
AL539_01435	PF07726	ATPase family associated with various cellular activities (AAA)
AL539_01440	PF04055	Radical SAM superfamily
AL539_01440	PF13186	Iron-sulfur cluster-binding domain
AL539_01445	PF00884	Sulfatase
AL539_01445	PF14707	C-terminal region of aryl-sulfatase
AL539_01450	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_01450	PF03466	LysR substrate binding domain
AL539_01455	PF00884	Sulfatase
AL539_01455	PF14707	C-terminal region of aryl-sulfatase
AL539_01460	PF00486	Transcriptional regulatory protein, C terminal
AL539_01465	PF06934	AL539_01465
AL539_01475	PF00072	Response regulator receiver domain
AL539_01475	PF00512	His Kinase A (phospho-acceptor) domain
AL539_01475	PF01627	Hpt domain
AL539_01475	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_01480	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL539_01485	PF02142	MGS-like domain
AL539_01490	PF00580	UvrD/REP helicase N-terminal domain
AL539_01490	PF12462	AL539_01490
AL539_01490	PF13361	UvrD-like helicase C-terminal domain
AL539_01495	PF12805	AL539_01495
AL539_01495	PF13515	AL539_01495
AL539_01520	PF10688	AL539_01520
AL539_01525	PF09981	Uncharacterized protein conserved in bacteria (DUF2218)
AL539_01530	PF00593	TonB dependent receptor
AL539_01530	PF07715	TonB-dependent Receptor Plug Domain
AL539_01540	PF13411	MerR HTH family regulatory protein
AL539_01545	PF00005	ABC transporter
AL539_01550	PF01032	FecCD transport family
AL539_01555	PF01032	FecCD transport family
AL539_01560	PF01497	Periplasmic binding protein
AL539_01565	PF00027	Cyclic nucleotide-binding domain
AL539_01570	PF01048	Phosphorylase superfamily
AL539_01575	PF04973	AL539_01575
AL539_01585	PF00356	Bacterial regulatory proteins, lacI family
AL539_01585	PF13377	Periplasmic binding protein-like domain
AL539_01590	PF00294	pfkB family carbohydrate kinase
AL539_01595	PF13407	Periplasmic binding protein domain
AL539_01600	PF02653	AL539_01600
AL539_01605	PF00005	ABC transporter
AL539_01610	PF05025	RbsD / FucU transport protein family
AL539_01615	PF00563	EAL domain
AL539_01615	PF00990	GGDEF domain
AL539_01625	PF13645	AL539_01625
AL539_01640	PF09335	AL539_01640
AL539_01650	PF13590	Domain of unknown function (DUF4136)
AL539_01660	PF04116	AL539_01660
AL539_01665	PF10974	AL539_01665
AL539_01670	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL539_01670	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AL539_01675	PF02566	OsmC-like protein
AL539_01680	PF00072	Response regulator receiver domain
AL539_01680	PF00512	His Kinase A (phospho-acceptor) domain
AL539_01680	PF01627	Hpt domain
AL539_01680	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_01685	PF00034	Cytochrome c
AL539_01685	PF03150	Di-haem cytochrome c peroxidase
AL539_01690	PF01957	NfeD-like C-terminal, partner-binding
AL539_01695	PF01145	SPFH domain / Band 7 family
AL539_01705	PF00881	Nitroreductase family
AL539_01710	PF00005	ABC transporter
AL539_01715	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_01720	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL539_01725	PF00732	GMC oxidoreductase
AL539_01725	PF05199	GMC oxidoreductase
AL539_01730	PF00171	Aldehyde dehydrogenase family
AL539_01735	PF00440	Bacterial regulatory proteins, tetR family
AL539_01735	PF13977	Bacterial transcriptional repressor
AL539_01740	PF00990	GGDEF domain
AL539_01745	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_01750	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_01750	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL539_01755	PF16113	AL539_01755
AL539_01760	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_01765	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_01765	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_01765	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_01770	PF00171	Aldehyde dehydrogenase family
AL539_01775	PF00108	Thiolase, N-terminal domain
AL539_01775	PF02803	Thiolase, C-terminal domain
AL539_01780	PF00376	MerR family regulatory protein
AL539_01780	PF09278	MerR, DNA binding
AL539_01785	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_01785	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_01785	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_01790	PF01039	Carboxyl transferase domain
AL539_01795	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_01800	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AL539_01800	PF00364	Biotin-requiring enzyme
AL539_01800	PF02785	Biotin carboxylase C-terminal domain
AL539_01800	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL539_01805	PF00682	HMGL-like
AL539_01810	PF08895	AL539_01810
AL539_01815	PF00924	Mechanosensitive ion channel
AL539_01825	PF12464	Maltose acetyltransferase
AL539_01825	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_01830	PF00155	Aminotransferase class I and II
AL539_01830	PF00392	Bacterial regulatory proteins, gntR family
AL539_01835	PF01654	AL539_01835
AL539_01840	PF02322	AL539_01840
AL539_01845	PF10617	AL539_01845
AL539_01855	PF13419	Haloacid dehalogenase-like hydrolase
AL539_01860	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_01860	PF03466	LysR substrate binding domain
AL539_01865	PF03306	Alpha-acetolactate decarboxylase
AL539_01870	PF00205	Thiamine pyrophosphate enzyme, central domain
AL539_01870	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL539_01870	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL539_01875	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_01880	PF02028	BCCT family transporter
AL539_01885	PF05724	Thiopurine S-methyltransferase (TPMT)
AL539_01910	PF05724	Thiopurine S-methyltransferase (TPMT)
AL539_01915	PF00501	AMP-binding enzyme
AL539_01920	PF00005	ABC transporter
AL539_01925	PF13458	Periplasmic binding protein
AL539_01930	PF02653	AL539_01930
AL539_01935	PF02653	AL539_01935
AL539_01940	PF00501	AMP-binding enzyme
AL539_01945	PF00005	ABC transporter
AL539_01945	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AL539_01955	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AL539_01955	PF13450	NAD(P)-binding Rossmann-like domain
AL539_01960	PF01012	Electron transfer flavoprotein domain
AL539_01965	PF00766	Electron transfer flavoprotein FAD-binding domain
AL539_01965	PF01012	Electron transfer flavoprotein domain
AL539_01970	PF00501	AMP-binding enzyme
AL539_01970	PF13193	AMP-binding enzyme C-terminal domain
AL539_01975	PF00367	phosphotransferase system, EIIB
AL539_01975	PF02378	Phosphotransferase system, EIIC
AL539_01980	PF02056	Family 4 glycosyl hydrolase
AL539_01980	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AL539_01985	PF00392	Bacterial regulatory proteins, gntR family
AL539_01985	PF07702	UTRA domain
AL539_01990	PF03334	AL539_01990
AL539_01995	PF04066	AL539_01995
AL539_02000	PF01899	AL539_02000
AL539_02005	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AL539_02010	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
AL539_02015	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AL539_02015	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AL539_02015	PF04039	AL539_02015
AL539_02015	PF13244	AL539_02015
AL539_02025	PF00582	Universal stress protein family
AL539_02030	PF00106	short chain dehydrogenase
AL539_02035	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_02035	PF03466	LysR substrate binding domain
AL539_02040	PF02311	AraC-like ligand binding domain
AL539_02040	PF12833	Helix-turn-helix domain
AL539_02045	PF07690	Major Facilitator Superfamily
AL539_02060	PF13665	AL539_02060
AL539_02065	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AL539_02070	PF05936	AL539_02070
AL539_02075	PF12790	Type VI secretion lipoprotein
AL539_02080	PF00498	FHA domain
AL539_02090	PF06812	AL539_02090
AL539_02095	PF06744	AL539_02095
AL539_02095	PF06761	AL539_02095
AL539_02095	PF14331	AL539_02095
AL539_02100	PF01037	AsnC family
AL539_02100	PF13404	AsnC-type helix-turn-helix domain
AL539_02105	PF06996	AL539_02105
AL539_02110	PF05947	AL539_02110
AL539_02115	PF04965	Gene 25-like lysozyme
AL539_02120	PF05943	AL539_02120
AL539_02125	PF05591	AL539_02125
AL539_02130	PF06812	AL539_02130
AL539_02130	PF16989	AL539_02130
AL539_02135	PF00069	Protein kinase domain
AL539_02145	PF09937	AL539_02145
AL539_02160	PF05954	Phage late control gene D protein (GPD)
AL539_02165	PF05638	Protein of unknown function (DUF796)
AL539_02170	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_02170	PF07724	AAA domain (Cdc48 subfamily)
AL539_02170	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_02175	PF00158	Sigma-54 interaction domain
AL539_02175	PF02954	Bacterial regulatory protein, Fis family
AL539_02175	PF13185	GAF domain
AL539_02180	PF00691	OmpA family
AL539_02200	PF01551	Peptidase family M23
AL539_02225	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_02225	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_02225	PF02378	Phosphotransferase system, EIIC
AL539_02230	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_02235	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_02240	PF12833	Helix-turn-helix domain
AL539_02245	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_02245	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_02245	PF02378	Phosphotransferase system, EIIC
AL539_02250	PF01238	Phosphomannose isomerase type I
AL539_02255	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_02260	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_02265	PF07971	Glycosyl hydrolase family 92
AL539_02270	PF07971	Glycosyl hydrolase family 92
AL539_02275	PF07971	Glycosyl hydrolase family 92
AL539_02280	PF07971	Glycosyl hydrolase family 92
AL539_02285	PF07971	Glycosyl hydrolase family 92
AL539_02310	PF00478	IMP dehydrogenase / GMP reductase domain
AL539_02315	PF01256	Carbohydrate kinase
AL539_02315	PF03853	YjeF-related protein N-terminus
AL539_02320	PF00989	PAS fold
AL539_02325	PF00072	Response regulator receiver domain
AL539_02330	PF00248	Aldo/keto reductase family
AL539_02345	PF00654	Voltage gated chloride channel
AL539_02350	PF03595	Voltage-dependent anion channel
AL539_02355	PF01227	GTP cyclohydrolase I
AL539_02360	PF00994	Probable molybdopterin binding domain
AL539_02360	PF03453	MoeA N-terminal region (domain I and II)
AL539_02360	PF03454	MoeA C-terminal region (domain IV)
AL539_02365	PF00899	ThiF family
AL539_02370	PF16130	AL539_02370
AL539_02380	PF00581	Rhodanese-like domain
AL539_02385	PF04198	Putative sugar-binding domain
AL539_02400	PF00923	Transaldolase
AL539_02405	PF00456	Transketolase, thiamine diphosphate binding domain
AL539_02405	PF02779	Transketolase, pyrimidine binding domain
AL539_02405	PF02780	Transketolase, C-terminal domain
AL539_02410	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_02410	PF08447	PAS fold
AL539_02415	PF07690	Major Facilitator Superfamily
AL539_02420	PF00793	DAHP synthetase I family
AL539_02430	PF00691	OmpA family
AL539_02430	PF13505	Outer membrane protein beta-barrel domain
AL539_02435	PF13419	Haloacid dehalogenase-like hydrolase
AL539_02440	PF00472	RF-1 domain
AL539_02445	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_02450	PF00873	AcrB/AcrD/AcrF family
AL539_02455	PF16576	AL539_02455
AL539_02460	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_02465	PF01546	Peptidase family M20/M25/M40
AL539_02465	PF07687	Peptidase dimerisation domain
AL539_02480	PF00072	Response regulator receiver domain
AL539_02480	PF00196	Bacterial regulatory proteins, luxR family
AL539_02485	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_02485	PF07730	Histidine kinase
AL539_02485	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
AL539_02490	PF12838	4Fe-4S dicluster domain
AL539_02495	PF03927	NapD protein
AL539_02500	PF00384	Molybdopterin oxidoreductase
AL539_02500	PF01568	Molydopterin dinucleotide binding domain
AL539_02500	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL539_02505	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
AL539_02510	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL539_02515	PF09574	AL539_02515
AL539_02520	PF07167	AL539_02520
AL539_02525	PF09361	AL539_02525
AL539_02530	PF00108	Thiolase, N-terminal domain
AL539_02530	PF02803	Thiolase, C-terminal domain
AL539_02535	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_02540	PF01810	AL539_02540
AL539_02550	PF02355	Protein export membrane protein
AL539_02550	PF07549	SecD/SecF GG Motif
AL539_02555	PF02355	Protein export membrane protein
AL539_02555	PF07549	SecD/SecF GG Motif
AL539_02555	PF13721	SecD export protein N-terminal TM region
AL539_02565	PF08239	Bacterial SH3 domain
AL539_02580	PF13649	Methyltransferase domain
AL539_02585	PF01037	AsnC family
AL539_02585	PF13412	Winged helix-turn-helix DNA-binding
AL539_02590	PF00892	EamA-like transporter family
AL539_02595	PF07238	PilZ domain
AL539_02595	PF12945	Flagellar protein YcgR
AL539_02600	PF11168	AL539_02600
AL539_02605	PF13437	HlyD family secretion protein
AL539_02605	PF13533	Biotin-lipoyl like
AL539_02610	PF01047	MarR family
AL539_02615	PF00072	Response regulator receiver domain
AL539_02615	PF00512	His Kinase A (phospho-acceptor) domain
AL539_02615	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_02615	PF09308	LuxQ, periplasmic
AL539_02620	PF13407	Periplasmic binding protein domain
AL539_02630	PF01541	GIY-YIG catalytic domain
AL539_02635	PF04337	Protein of unknown function, DUF480
AL539_02645	PF04363	AL539_02645
AL539_02650	PF01554	MatE
AL539_02655	PF00072	Response regulator receiver domain
AL539_02655	PF00512	His Kinase A (phospho-acceptor) domain
AL539_02655	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_02660	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL539_02660	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL539_02675	PF01810	AL539_02675
AL539_02680	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_02680	PF03466	LysR substrate binding domain
AL539_02685	PF01037	AsnC family
AL539_02685	PF13404	AsnC-type helix-turn-helix domain
AL539_02695	PF13520	Amino acid permease
AL539_02700	PF00155	Aminotransferase class I and II
AL539_02700	PF00392	Bacterial regulatory proteins, gntR family
AL539_02705	PF12900	Pyridoxamine 5'-phosphate oxidase
AL539_02710	PF00512	His Kinase A (phospho-acceptor) domain
AL539_02710	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_02715	PF00072	Response regulator receiver domain
AL539_02715	PF00486	Transcriptional regulatory protein, C terminal
AL539_02735	PF12625	AL539_02735
AL539_02735	PF12833	Helix-turn-helix domain
AL539_02745	PF13533	Biotin-lipoyl like
AL539_02750	PF03109	AL539_02750
AL539_02755	PF01769	Divalent cation transporter
AL539_02755	PF03448	MgtE intracellular N domain
AL539_02760	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
AL539_02765	PF07969	Amidohydrolase family
AL539_02770	PF01966	HD domain
AL539_02775	PF13443	Cro/C1-type HTH DNA-binding domain
AL539_02785	PF01553	Acyltransferase
AL539_02785	PF07690	Major Facilitator Superfamily
AL539_02795	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL539_02800	PF00255	Glutathione peroxidase
AL539_02805	PF11911	AL539_02805
AL539_02815	PF01323	DSBA-like thioredoxin domain
AL539_02830	PF00072	Response regulator receiver domain
AL539_02830	PF00486	Transcriptional regulatory protein, C terminal
AL539_02835	PF00512	His Kinase A (phospho-acceptor) domain
AL539_02835	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_02845	PF01219	Prokaryotic diacylglycerol kinase
AL539_02850	PF00884	Sulfatase
AL539_02850	PF08019	AL539_02850
AL539_02855	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL539_02860	PF03733	AL539_02860
AL539_02870	PF01734	Patatin-like phospholipase
AL539_02875	PF02678	Pirin
AL539_02875	PF05726	Pirin C-terminal cupin domain
AL539_02880	PF00313	'Cold-shock' DNA-binding domain
AL539_02895	PF00962	Adenosine/AMP deaminase
AL539_02900	PF08534	Redoxin
AL539_02905	PF05036	Sporulation related domain
AL539_02910	PF00768	D-alanyl-D-alanine carboxypeptidase
AL539_02910	PF07943	Penicillin-binding protein 5, C-terminal domain
AL539_02920	PF02798	Glutathione S-transferase, N-terminal domain
AL539_02920	PF13410	Glutathione S-transferase, C-terminal domain
AL539_02930	PF00251	Glycosyl hydrolases family 32 N-terminal domain
AL539_02930	PF08244	Glycosyl hydrolases family 32 C terminal
AL539_02935	PF00294	pfkB family carbohydrate kinase
AL539_02940	PF00367	phosphotransferase system, EIIB
AL539_02940	PF02378	Phosphotransferase system, EIIC
AL539_02945	PF00356	Bacterial regulatory proteins, lacI family
AL539_02945	PF13377	Periplasmic binding protein-like domain
AL539_02950	PF02264	LamB porin
AL539_02950	PF11471	AL539_02950
AL539_02965	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_02970	PF00950	AL539_02970
AL539_02975	PF01297	Periplasmic solute binding protein family
AL539_02985	PF12973	ChrR Cupin-like domain
AL539_02990	PF04325	Protein of unknown function (DUF465)
AL539_02995	PF00106	short chain dehydrogenase
AL539_03000	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03000	PF03466	LysR substrate binding domain
AL539_03005	PF06445	GyrI-like small molecule binding domain
AL539_03005	PF12833	Helix-turn-helix domain
AL539_03010	PF00155	Aminotransferase class I and II
AL539_03025	PF13698	AL539_03025
AL539_03040	PF00270	DEAD/DEAH box helicase
AL539_03040	PF00271	Helicase conserved C-terminal domain
AL539_03045	PF17389	AL539_03045
AL539_03050	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03050	PF03466	LysR substrate binding domain
AL539_03055	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03055	PF03466	LysR substrate binding domain
AL539_03060	PF04399	Glutaredoxin 2, C terminal domain
AL539_03060	PF13417	Glutathione S-transferase, N-terminal domain
AL539_03065	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_03070	PF00107	Zinc-binding dehydrogenase
AL539_03070	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_03075	PF12973	ChrR Cupin-like domain
AL539_03080	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_03085	PF12625	AL539_03085
AL539_03085	PF12833	Helix-turn-helix domain
AL539_03095	PF00557	Metallopeptidase family M24
AL539_03095	PF01321	Creatinase/Prolidase N-terminal domain
AL539_03100	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_03105	PF01037	AsnC family
AL539_03105	PF13412	Winged helix-turn-helix DNA-binding
AL539_03110	PF00171	Aldehyde dehydrogenase family
AL539_03115	PF00202	Aminotransferase class-III
AL539_03120	PF09831	AL539_03120
AL539_03125	PF01810	AL539_03125
AL539_03130	PF12614	AL539_03130
AL539_03135	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03135	PF03466	LysR substrate binding domain
AL539_03140	PF00709	Adenylosuccinate synthetase
AL539_03145	PF00710	Asparaginase
AL539_03150	PF03618	AL539_03150
AL539_03155	PF00391	PEP-utilising enzyme, mobile domain
AL539_03155	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AL539_03155	PF02896	PEP-utilising enzyme, TIM barrel domain
AL539_03165	PF00196	Bacterial regulatory proteins, luxR family
AL539_03170	PF00579	tRNA synthetases class I (W and Y)
AL539_03175	PF13416	Bacterial extracellular solute-binding protein
AL539_03195	PF02028	BCCT family transporter
AL539_03200	PF00392	Bacterial regulatory proteins, gntR family
AL539_03200	PF07702	UTRA domain
AL539_03205	PF13343	Bacterial extracellular solute-binding protein
AL539_03210	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
AL539_03215	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_03220	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_03225	PF00005	ABC transporter
AL539_03225	PF08402	TOBE domain
AL539_03230	PF12710	haloacid dehalogenase-like hydrolase
AL539_03235	PF00440	Bacterial regulatory proteins, tetR family
AL539_03245	PF00873	AcrB/AcrD/AcrF family
AL539_03265	PF00873	AcrB/AcrD/AcrF family
AL539_03270	PF13437	HlyD family secretion protein
AL539_03270	PF13533	Biotin-lipoyl like
AL539_03275	PF13091	PLD-like domain
AL539_03280	PF13649	Methyltransferase domain
AL539_03285	PF04266	ASCH domain
AL539_03290	PF13181	Tetratricopeptide repeat
AL539_03295	PF09622	AL539_03295
AL539_03300	PF00376	MerR family regulatory protein
AL539_03300	PF09278	MerR, DNA binding
AL539_03305	PF07690	Major Facilitator Superfamily
AL539_03315	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03315	PF03466	LysR substrate binding domain
AL539_03320	PF07755	Protein of unknown function (DUF1611)
AL539_03320	PF17396	AL539_03320
AL539_03325	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AL539_03325	PF13378	Enolase C-terminal domain-like
AL539_03335	PF00009	Elongation factor Tu GTP binding domain
AL539_03335	PF00679	Elongation factor G C-terminus
AL539_03335	PF03764	Elongation factor G, domain IV
AL539_03335	PF14492	Elongation Factor G, domain II
AL539_03345	PF01636	Phosphotransferase enzyme family
AL539_03350	PF04400	AL539_03350
AL539_03355	PF02579	Dinitrogenase iron-molybdenum cofactor
AL539_03360	PF02001	AL539_03360
AL539_03370	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_03375	PF00005	ABC transporter
AL539_03380	PF04170	NlpE N-terminal domain
AL539_03385	PF06629	AL539_03385
AL539_03390	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_03390	PF12793	AL539_03390
AL539_03395	PF01389	OmpA-like transmembrane domain
AL539_03400	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03400	PF03466	LysR substrate binding domain
AL539_03405	PF00892	EamA-like transporter family
AL539_03410	PF13489	Methyltransferase domain
AL539_03415	PF05433	AL539_03415
AL539_03425	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
AL539_03430	PF00293	NUDIX domain
AL539_03435	PF00857	Isochorismatase family
AL539_03440	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_03445	PF00892	EamA-like transporter family
AL539_03450	PF00455	AL539_03450
AL539_03450	PF08220	DeoR-like helix-turn-helix domain
AL539_03455	PF01625	Peptide methionine sulfoxide reductase
AL539_03460	PF03060	Nitronate monooxygenase
AL539_03465	PF13520	Amino acid permease
AL539_03470	PF05985	Ethanolamine ammonia-lyase light chain (EutC)
AL539_03475	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
AL539_03480	PF12833	Helix-turn-helix domain
AL539_03485	PF00440	Bacterial regulatory proteins, tetR family
AL539_03495	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_03500	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03500	PF03466	LysR substrate binding domain
AL539_03505	PF01810	AL539_03505
AL539_03515	PF00118	TCP-1/cpn60 chaperonin family
AL539_03520	PF00166	Chaperonin 10 Kd subunit
AL539_03525	PF00581	Rhodanese-like domain
AL539_03530	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_03535	PF11216	AL539_03535
AL539_03540	PF01070	FMN-dependent dehydrogenase
AL539_03545	PF00999	Sodium/hydrogen exchanger family
AL539_03545	PF02254	TrkA-N domain
AL539_03550	PF10101	AL539_03550
AL539_03560	PF00669	Bacterial flagellin N-terminal helical region
AL539_03565	PF00460	Flagella basal body rod protein
AL539_03565	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_03570	PF10135	AL539_03570
AL539_03575	PF02119	AL539_03575
AL539_03580	PF02107	AL539_03580
AL539_03585	PF00460	Flagella basal body rod protein
AL539_03585	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_03590	PF00460	Flagella basal body rod protein
AL539_03590	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_03595	PF00460	Flagella basal body rod protein
AL539_03595	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_03595	PF07559	Flagellar basal body protein FlaE
AL539_03600	PF03963	AL539_03600
AL539_03600	PF13860	FlgD Ig-like domain
AL539_03600	PF13861	FlgD Tudor-like domain
AL539_03605	PF00460	Flagella basal body rod protein
AL539_03605	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_03610	PF00460	Flagella basal body rod protein
AL539_03615	PF13144	SAF-like
AL539_03620	PF04316	Anti-sigma-28 factor, FlgM
AL539_03625	PF05130	FlgN protein
AL539_03630	PF01464	Transglycosylase SLT domain
AL539_03635	PF00293	NUDIX domain
AL539_03640	PF03891	AL539_03640
AL539_03650	PF02698	DUF218 domain
AL539_03655	PF03313	AL539_03655
AL539_03655	PF03315	Serine dehydratase beta chain
AL539_03665	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03665	PF03466	LysR substrate binding domain
AL539_03670	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03670	PF03466	LysR substrate binding domain
AL539_03675	PF00691	OmpA family
AL539_03675	PF01389	OmpA-like transmembrane domain
AL539_03680	PF00246	Zinc carboxypeptidase
AL539_03685	PF01266	FAD dependent oxidoreductase
AL539_03690	PF11777	AL539_03690
AL539_03695	PF04393	AL539_03695
AL539_03700	PF13505	Outer membrane protein beta-barrel domain
AL539_03705	PF00892	EamA-like transporter family
AL539_03710	PF00392	Bacterial regulatory proteins, gntR family
AL539_03710	PF07702	UTRA domain
AL539_03715	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_03720	PF00005	ABC transporter
AL539_03720	PF08402	TOBE domain
AL539_03725	PF13343	Bacterial extracellular solute-binding protein
AL539_03730	PF00266	Aminotransferase class-V
AL539_03735	PF00202	Aminotransferase class-III
AL539_03740	PF13419	Haloacid dehalogenase-like hydrolase
AL539_03750	PF00082	Subtilase family
AL539_03750	PF01483	Proprotein convertase P-domain
AL539_03750	PF02225	PA domain
AL539_03750	PF05922	Peptidase inhibitor I9
AL539_03755	PF00657	GDSL-like Lipase/Acylhydrolase
AL539_03760	PF00440	Bacterial regulatory proteins, tetR family
AL539_03770	PF02321	Outer membrane efflux protein
AL539_03775	PF00005	ABC transporter
AL539_03775	PF02687	AL539_03775
AL539_03775	PF12704	MacB-like periplasmic core domain
AL539_03785	PF13737	AL539_03785
AL539_03795	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_03800	PF00194	Eukaryotic-type carbonic anhydrase
AL539_03805	PF09695	AL539_03805
AL539_03815	PF00293	NUDIX domain
AL539_03820	PF13419	Haloacid dehalogenase-like hydrolase
AL539_03825	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_03825	PF03466	LysR substrate binding domain
AL539_03835	PF08279	HTH domain
AL539_03835	PF13280	AL539_03835
AL539_03860	PF12464	Maltose acetyltransferase
AL539_03860	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_03865	PF02566	OsmC-like protein
AL539_03870	PF01625	Peptide methionine sulfoxide reductase
AL539_03870	PF01641	SelR domain
AL539_03875	PF10013	AL539_03875
AL539_03880	PF00106	short chain dehydrogenase
AL539_03885	PF04244	Deoxyribodipyrimidine photo-lyase-related protein
AL539_03890	PF00875	DNA photolyase
AL539_03890	PF03441	FAD binding domain of DNA photolyase
AL539_03895	PF00990	GGDEF domain
AL539_03905	PF01381	Helix-turn-helix
AL539_03905	PF06114	Domain of unknown function (DUF955)
AL539_03905	PF12268	AL539_03905
AL539_03910	PF00990	GGDEF domain
AL539_03910	PF03924	CHASE domain
AL539_03915	PF13532	2OG-Fe(II) oxygenase superfamily
AL539_03920	PF12060	AL539_03920
AL539_03925	PF01773	Na+ dependent nucleoside transporter N-terminus
AL539_03925	PF07662	Na+ dependent nucleoside transporter C-terminus
AL539_03925	PF07670	Nucleoside recognition
AL539_03940	PF11140	AL539_03940
AL539_03945	PF01212	Beta-eliminating lyase
AL539_03950	PF03116	AL539_03950
AL539_03955	PF01654	AL539_03955
AL539_03960	PF02322	AL539_03960
AL539_03965	PF10617	AL539_03965
AL539_03975	PF01266	FAD dependent oxidoreductase
AL539_03980	PF06808	AL539_03980
AL539_03985	PF16868	AL539_03985
AL539_03995	PF05525	AL539_03995
AL539_04000	PF00990	GGDEF domain
AL539_04005	PF00072	Response regulator receiver domain
AL539_04005	PF00158	Sigma-54 interaction domain
AL539_04005	PF02954	Bacterial regulatory protein, Fis family
AL539_04010	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_04010	PF13426	PAS domain
AL539_04015	PF00232	Glycosyl hydrolase family 1
AL539_04020	PF05787	Bacterial protein of unknown function (DUF839)
AL539_04025	PF04320	AL539_04025
AL539_04030	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_04030	PF03466	LysR substrate binding domain
AL539_04035	PF17263	AL539_04035
AL539_04040	PF12706	Beta-lactamase superfamily domain
AL539_04045	PF00440	Bacterial regulatory proteins, tetR family
AL539_04045	PF14246	AefR-like transcriptional repressor, C-terminal region
AL539_04055	PF08443	RimK-like ATP-grasp domain
AL539_04060	PF05618	Putative ATP-dependant zinc protease
AL539_04065	PF00753	Metallo-beta-lactamase superfamily
AL539_04070	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL539_04075	PF00491	Arginase family
AL539_04080	PF07690	Major Facilitator Superfamily
AL539_04085	PF00326	Prolyl oligopeptidase family
AL539_04085	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL539_04090	PF13609	Gram-negative porin
AL539_04100	PF00950	AL539_04100
AL539_04105	PF00005	ABC transporter
AL539_04110	PF01297	Periplasmic solute binding protein family
AL539_04125	PF10670	AL539_04125
AL539_04130	PF10029	AL539_04130
AL539_04135	PF16357	AL539_04135
AL539_04145	PF03544	Gram-negative bacterial TonB protein C-terminal
AL539_04150	PF02472	Biopolymer transport protein ExbD/TolR
AL539_04155	PF01618	AL539_04155
AL539_04160	PF01618	AL539_04160
AL539_04165	PF11932	AL539_04165
AL539_04170	PF00593	TonB dependent receptor
AL539_04170	PF07715	TonB-dependent Receptor Plug Domain
AL539_04175	PF00512	His Kinase A (phospho-acceptor) domain
AL539_04175	PF00672	HAMP domain
AL539_04175	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_04175	PF16750	AL539_04175
AL539_04180	PF00072	Response regulator receiver domain
AL539_04180	PF00486	Transcriptional regulatory protein, C terminal
AL539_04185	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL539_04190	PF03734	L,D-transpeptidase catalytic domain
AL539_04195	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL539_04195	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_04200	PF10928	Protein of unknown function (DUF2810)
AL539_04250	PF11286	AL539_04250
AL539_04255	PF04013	Putative SAM-dependent RNA methyltransferase
AL539_04260	PF01523	Putative modulator of DNA gyrase
AL539_04265	PF01523	Putative modulator of DNA gyrase
AL539_04270	PF08543	Phosphomethylpyrimidine kinase
AL539_04275	PF00005	ABC transporter
AL539_04280	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_04285	PF09084	NMT1/THI5 like
AL539_04290	PF03070	TENA/THI-4/PQQC family
AL539_04295	PF02110	Hydroxyethylthiazole kinase family
AL539_04300	PF02581	Thiamine monophosphate synthase/TENI
AL539_04305	PF01569	PAP2 superfamily
AL539_04310	PF00384	Molybdopterin oxidoreductase
AL539_04310	PF01568	Molydopterin dinucleotide binding domain
AL539_04315	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL539_04320	PF13302	Acetyltransferase (GNAT) domain
AL539_04325	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_04330	PF00583	Acetyltransferase (GNAT) family
AL539_04335	PF13419	Haloacid dehalogenase-like hydrolase
AL539_04340	PF00583	Acetyltransferase (GNAT) family
AL539_04345	PF07963	Prokaryotic N-terminal methylation motif
AL539_04355	PF00892	EamA-like transporter family
AL539_04360	PF00155	Aminotransferase class I and II
AL539_04360	PF00392	Bacterial regulatory proteins, gntR family
AL539_04365	PF02595	Glycerate kinase family
AL539_04370	PF02447	AL539_04370
AL539_04375	PF05651	AL539_04375
AL539_04375	PF13556	PucR C-terminal helix-turn-helix domain
AL539_04390	PF01432	Peptidase family M3
AL539_04395	PF06041	Bacterial protein of unknown function (DUF924)
AL539_04400	PF13642	protein structure with unknown function
AL539_04405	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_04410	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_04415	PF12706	Beta-lactamase superfamily domain
AL539_04420	PF07073	Modulator of Rho-dependent transcription termination (ROF)
AL539_04425	PF07690	Major Facilitator Superfamily
AL539_04430	PF16576	AL539_04430
AL539_04435	PF03922	OmpW family
AL539_04440	PF00805	Pentapeptide repeats (8 copies)
AL539_04440	PF13599	Pentapeptide repeats (9 copies)
AL539_04445	PF07883	Cupin domain
AL539_04450	PF12710	haloacid dehalogenase-like hydrolase
AL539_04455	PF03067	Chitin binding domain
AL539_04460	PF01037	AsnC family
AL539_04460	PF13412	Winged helix-turn-helix DNA-binding
AL539_04465	PF01810	AL539_04465
AL539_04470	PF04954	Siderophore-interacting protein
AL539_04470	PF08021	Siderophore-interacting FAD-binding domain
AL539_04475	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_04475	PF03466	LysR substrate binding domain
AL539_04480	PF00797	N-acetyltransferase
AL539_04485	PF00107	Zinc-binding dehydrogenase
AL539_04485	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_04490	PF00756	Putative esterase
AL539_04500	PF00990	GGDEF domain
AL539_04510	PF08282	haloacid dehalogenase-like hydrolase
AL539_04515	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_04515	PF03466	LysR substrate binding domain
AL539_04520	PF00753	Metallo-beta-lactamase superfamily
AL539_04525	PF01323	DSBA-like thioredoxin domain
AL539_04530	PF00849	RNA pseudouridylate synthase
AL539_04535	PF01554	MatE
AL539_04540	PF00990	GGDEF domain
AL539_04550	PF06865	Protein of unknown function (DUF1255)
AL539_04555	PF11012	AL539_04555
AL539_04565	PF13737	AL539_04565
AL539_04575	PF12146	Putative lysophospholipase
AL539_04580	PF00440	Bacterial regulatory proteins, tetR family
AL539_04585	PF01757	AL539_04585
AL539_04590	PF03600	Citrate transporter
AL539_04595	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_04600	PF02588	AL539_04600
AL539_04610	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL539_04610	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AL539_04615	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL539_04615	PF02805	Metal binding domain of Ada
AL539_04615	PF06029	AlkA N-terminal domain
AL539_04615	PF12833	Helix-turn-helix domain
AL539_04625	PF07681	AL539_04625
AL539_04630	PF02678	Pirin
AL539_04635	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_04635	PF03466	LysR substrate binding domain
AL539_04640	PF04219	AL539_04640
AL539_04645	PF11280	AL539_04645
AL539_04650	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL539_04660	PF03616	AL539_04660
AL539_04665	PF00392	Bacterial regulatory proteins, gntR family
AL539_04670	PF00005	ABC transporter
AL539_04680	PF03616	AL539_04680
AL539_04690	PF14247	AL539_04690
AL539_04695	PF04134	AL539_04695
AL539_04700	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_04700	PF17200	AL539_04700
AL539_04705	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL539_04710	PF10026	AL539_04710
AL539_04715	PF00072	Response regulator receiver domain
AL539_04715	PF04397	LytTr DNA-binding domain
AL539_04720	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_04720	PF06580	AL539_04720
AL539_04730	PF17131	AL539_04730
AL539_04735	PF02687	AL539_04735
AL539_04735	PF12704	MacB-like periplasmic core domain
AL539_04740	PF00005	ABC transporter
AL539_04750	PF01098	AL539_04750
AL539_04755	PF01709	Transcriptional regulator
AL539_04760	PF11686	AL539_04760
AL539_04765	PF00072	Response regulator receiver domain
AL539_04765	PF00512	His Kinase A (phospho-acceptor) domain
AL539_04765	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_04765	PF17149	AL539_04765
AL539_04770	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_04775	PF00925	GTP cyclohydrolase II
AL539_04775	PF08719	Domain of unknown function (DUF1768)
AL539_04785	PF00005	ABC transporter
AL539_04790	PF00005	ABC transporter
AL539_04790	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_04800	PF11826	AL539_04800
AL539_04805	PF13614	AAA domain
AL539_04810	PF02195	ParB-like nuclease domain
AL539_04815	PF05127	Helicase
AL539_04815	PF08351	Domain of unknown function (DUF1726)
AL539_04815	PF13718	GNAT acetyltransferase 2
AL539_04820	PF03961	AL539_04820
AL539_04825	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_04830	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_04830	PF03466	LysR substrate binding domain
AL539_04845	PF00367	phosphotransferase system, EIIB
AL539_04845	PF02378	Phosphotransferase system, EIIC
AL539_04850	PF01380	SIS domain
AL539_04860	PF01380	SIS domain
AL539_04860	PF01418	Helix-turn-helix domain, rpiR family
AL539_04865	PF00246	Zinc carboxypeptidase
AL539_04870	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_04875	PF03358	NADPH-dependent FMN reductase
AL539_04885	PF00924	Mechanosensitive ion channel
AL539_04890	PF00005	ABC transporter
AL539_04890	PF00664	ABC transporter transmembrane region
AL539_04895	PF00563	EAL domain
AL539_04895	PF00990	GGDEF domain
AL539_04895	PF16448	AL539_04895
AL539_04900	PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP
AL539_04905	PF13437	HlyD family secretion protein
AL539_04905	PF13533	Biotin-lipoyl like
AL539_04910	PF00072	Response regulator receiver domain
AL539_04910	PF02954	Bacterial regulatory protein, Fis family
AL539_04915	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_04915	PF02743	Cache domain
AL539_04920	PF01243	Pyridoxamine 5'-phosphate oxidase
AL539_04920	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
AL539_04925	PF00196	Bacterial regulatory proteins, luxR family
AL539_04925	PF08448	PAS fold
AL539_04930	PF12833	Helix-turn-helix domain
AL539_04935	PF00171	Aldehyde dehydrogenase family
AL539_04935	PF01619	Proline dehydrogenase
AL539_04935	PF14850	DNA-binding domain of Proline dehydrogenase
AL539_04945	PF00474	Sodium:solute symporter family
AL539_04950	PF13302	Acetyltransferase (GNAT) domain
AL539_04955	PF00076	RNA recognition motif
AL539_04965	PF13302	Acetyltransferase (GNAT) domain
AL539_04975	PF01037	AsnC family
AL539_04975	PF13412	Winged helix-turn-helix DNA-binding
AL539_04985	PF00005	ABC transporter
AL539_04985	PF00664	ABC transporter transmembrane region
AL539_04990	PF02274	Amidinotransferase
AL539_04995	PF00270	DEAD/DEAH box helicase
AL539_04995	PF00271	Helicase conserved C-terminal domain
AL539_05000	PF03473	MOSC domain
AL539_05000	PF03475	3-alpha domain
AL539_05005	PF12833	Helix-turn-helix domain
AL539_05010	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_05020	PF04542	Sigma-70 region 2
AL539_05020	PF08281	Sigma-70, region 4
AL539_05025	PF01965	DJ-1/PfpI family
AL539_05035	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_05035	PF03466	LysR substrate binding domain
AL539_05040	PF00188	Cysteine-rich secretory protein family
AL539_05045	PF13669	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_05055	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_05055	PF13192	Thioredoxin domain
AL539_05060	PF00578	AhpC/TSA family
AL539_05060	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AL539_05065	PF01047	MarR family
AL539_05070	PF02566	OsmC-like protein
AL539_05080	PF05016	Plasmid stabilisation system protein
AL539_05085	PF02698	DUF218 domain
AL539_05090	PF06445	GyrI-like small molecule binding domain
AL539_05090	PF12833	Helix-turn-helix domain
AL539_05095	PF12833	Helix-turn-helix domain
AL539_05100	PF13302	Acetyltransferase (GNAT) domain
AL539_05105	PF11212	AL539_05105
AL539_05110	PF07143	Hydroxyneurosporene synthase (CrtC)
AL539_05110	PF17186	AL539_05110
AL539_05115	PF02687	AL539_05115
AL539_05120	PF00005	ABC transporter
AL539_05125	PF11730	AL539_05125
AL539_05130	PF01136	AL539_05130
AL539_05135	PF03625	Domain of unknown function DUF302
AL539_05140	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL539_05140	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL539_05145	PF04183	IucA / IucC family
AL539_05145	PF06276	Ferric iron reductase FhuF-like transporter
AL539_05150	PF07690	Major Facilitator Superfamily
AL539_05155	PF04183	IucA / IucC family
AL539_05155	PF06276	Ferric iron reductase FhuF-like transporter
AL539_05165	PF00593	TonB dependent receptor
AL539_05165	PF07715	TonB-dependent Receptor Plug Domain
AL539_05170	PF00593	TonB dependent receptor
AL539_05170	PF07715	TonB-dependent Receptor Plug Domain
AL539_05175	PF01497	Periplasmic binding protein
AL539_05180	PF01032	FecCD transport family
AL539_05185	PF01032	FecCD transport family
AL539_05190	PF00005	ABC transporter
AL539_05195	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_05195	PF00672	HAMP domain
AL539_05195	PF02743	Cache domain
AL539_05200	PF00675	Insulinase (Peptidase family M16)
AL539_05200	PF05193	Peptidase M16 inactive domain
AL539_05205	PF04519	AL539_05205
AL539_05210	PF01551	Peptidase family M23
AL539_05220	PF01852	START domain
AL539_05225	PF07690	Major Facilitator Superfamily
AL539_05230	PF00239	Resolvase, N terminal domain
AL539_05230	PF02796	Helix-turn-helix domain of resolvase
AL539_05235	PF00356	Bacterial regulatory proteins, lacI family
AL539_05235	PF13377	Periplasmic binding protein-like domain
AL539_05240	PF00474	Sodium:solute symporter family
AL539_05245	PF07366	SnoaL-like polyketide cyclase
AL539_05250	PF07366	SnoaL-like polyketide cyclase
AL539_05255	PF06808	AL539_05255
AL539_05260	PF04290	AL539_05260
AL539_05265	PF03480	Bacterial extracellular solute-binding protein, family 7
AL539_05270	PF00356	Bacterial regulatory proteins, lacI family
AL539_05270	PF13377	Periplasmic binding protein-like domain
AL539_05275	PF03328	HpcH/HpaI aldolase/citrate lyase family
AL539_05280	PF00815	Histidinol dehydrogenase
AL539_05285	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_05295	PF12146	Putative lysophospholipase
AL539_05305	PF12680	SnoaL-like domain
AL539_05310	PF07690	Major Facilitator Superfamily
AL539_05320	PF03313	AL539_05320
AL539_05320	PF03315	Serine dehydratase beta chain
AL539_05325	PF00128	Alpha amylase, catalytic domain
AL539_05325	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL539_05330	PF02264	LamB porin
AL539_05335	PF07148	AL539_05335
AL539_05345	PF00128	Alpha amylase, catalytic domain
AL539_05350	PF02018	Carbohydrate binding domain
AL539_05350	PF04231	Endonuclease I
AL539_05355	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL539_05355	PF03714	Bacterial pullanase-associated domain
AL539_05355	PF11852	Domain of unknown function (DUF3372)
AL539_05360	PF08238	Sel1 repeat
AL539_05365	PF04014	Antidote-toxin recognition MazE
AL539_05370	PF08543	Phosphomethylpyrimidine kinase
AL539_05375	PF00375	Sodium:dicarboxylate symporter family
AL539_05380	PF03193	Protein of unknown function, DUF258
AL539_05385	PF00367	phosphotransferase system, EIIB
AL539_05390	PF02630	SCO1/SenC
AL539_05400	PF04018	AL539_05400
AL539_05405	PF00196	Bacterial regulatory proteins, luxR family
AL539_05410	PF00343	Carbohydrate phosphorylase
AL539_05415	PF02446	4-alpha-glucanotransferase
AL539_05420	PF00128	Alpha amylase, catalytic domain
AL539_05420	PF02806	Alpha amylase, C-terminal all-beta domain
AL539_05420	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL539_05425	PF00912	Transglycosylase
AL539_05430	PF00128	Alpha amylase, catalytic domain
AL539_05435	PF13462	Thioredoxin
AL539_05445	PF07670	Nucleoside recognition
AL539_05450	PF07670	Nucleoside recognition
AL539_05455	PF01546	Peptidase family M20/M25/M40
AL539_05455	PF07687	Peptidase dimerisation domain
AL539_05460	PF06803	AL539_05460
AL539_05475	PF00375	Sodium:dicarboxylate symporter family
AL539_05480	PF08874	AL539_05480
AL539_05485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_05485	PF03466	LysR substrate binding domain
AL539_05490	PF08803	Putative mono-oxygenase ydhR
AL539_05505	PF13737	AL539_05505
AL539_05515	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL539_05520	PF02563	Polysaccharide biosynthesis/export protein
AL539_05520	PF10531	SLBB domain
AL539_05525	PF00881	Nitroreductase family
AL539_05530	PF01914	AL539_05530
AL539_05535	PF01734	Patatin-like phospholipase
AL539_05540	PF03067	Chitin binding domain
AL539_05545	PF02469	Fasciclin domain
AL539_05550	PF00875	DNA photolyase
AL539_05550	PF03441	FAD binding domain of DNA photolyase
AL539_05560	PF00581	Rhodanese-like domain
AL539_05565	PF00561	alpha/beta hydrolase fold
AL539_05570	PF00768	D-alanyl-D-alanine carboxypeptidase
AL539_05570	PF07943	Penicillin-binding protein 5, C-terminal domain
AL539_05575	PF00128	Alpha amylase, catalytic domain
AL539_05575	PF09985	Domain of unknown function (DUF2223)
AL539_05580	PF12833	Helix-turn-helix domain
AL539_05585	PF00881	Nitroreductase family
AL539_05590	PF03992	Antibiotic biosynthesis monooxygenase
AL539_05595	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_05595	PF03466	LysR substrate binding domain
AL539_05600	PF09905	Uncharacterized conserved protein (DUF2132)
AL539_05605	PF13279	Thioesterase-like superfamily
AL539_05610	PF00175	Oxidoreductase NAD-binding domain
AL539_05610	PF00970	Oxidoreductase FAD-binding domain
AL539_05615	PF06271	AL539_05615
AL539_05620	PF09829	AL539_05620
AL539_05625	PF01594	AL539_05625
AL539_05630	PF07885	Ion channel
AL539_05635	PF16576	AL539_05635
AL539_05640	PF07869	AL539_05640
AL539_05645	PF02321	Outer membrane efflux protein
AL539_05650	PF04632	AL539_05650
AL539_05660	PF00892	EamA-like transporter family
AL539_05665	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_05665	PF03466	LysR substrate binding domain
AL539_05670	PF07690	Major Facilitator Superfamily
AL539_05675	PF00583	Acetyltransferase (GNAT) family
AL539_05680	PF00583	Acetyltransferase (GNAT) family
AL539_05685	PF10973	AL539_05685
AL539_05690	PF00072	Response regulator receiver domain
AL539_05690	PF00486	Transcriptional regulatory protein, C terminal
AL539_05695	PF00512	His Kinase A (phospho-acceptor) domain
AL539_05695	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_05700	PF06123	AL539_05700
AL539_05705	PF10990	AL539_05705
AL539_05710	PF00923	Transaldolase
AL539_05715	PF04055	Radical SAM superfamily
AL539_05715	PF13353	4Fe-4S single cluster domain
AL539_05720	PF01228	Glycine radical
AL539_05720	PF02901	Pyruvate formate lyase
AL539_05725	PF00440	Bacterial regulatory proteins, tetR family
AL539_05730	PF04982	AL539_05730
AL539_05735	PF09493	AL539_05735
AL539_05740	PF08000	Bacterial PH domain
AL539_05755	PF00691	OmpA family
AL539_05755	PF13677	AL539_05755
AL539_05760	PF01618	AL539_05760
AL539_05765	PF04542	Sigma-70 region 2
AL539_05765	PF04545	Sigma-70, region 4
AL539_05770	PF03748	AL539_05770
AL539_05775	PF02120	Flagellar hook-length control protein FliK
AL539_05785	PF02561	Flagellar protein FliS
AL539_05790	PF02465	AL539_05790
AL539_05790	PF07195	AL539_05790
AL539_05790	PF07196	Flagellin hook IN motif
AL539_05800	PF00669	Bacterial flagellin N-terminal helical region
AL539_05800	PF00700	Bacterial flagellin C-terminal helical region
AL539_05805	PF00563	EAL domain
AL539_05810	PF00771	FHIPEP family
AL539_05815	PF01312	FlhB HrpN YscU SpaS Family
AL539_05820	PF01311	AL539_05820
AL539_05825	PF01313	AL539_05825
AL539_05830	PF00813	AL539_05830
AL539_05835	PF01052	Surface presentation of antigens (SPOA)
AL539_05840	PF01052	Surface presentation of antigens (SPOA)
AL539_05845	PF00691	OmpA family
AL539_05850	PF00158	Sigma-54 interaction domain
AL539_05850	PF02954	Bacterial regulatory protein, Fis family
AL539_05855	PF02049	AL539_05855
AL539_05860	PF01514	Secretory protein of YscJ/FliF family
AL539_05860	PF08345	AL539_05860
AL539_05865	PF01706	FliG C-terminal domain
AL539_05865	PF14841	FliG middle domain
AL539_05865	PF14842	FliG N-terminal domain
AL539_05870	PF02108	AL539_05870
AL539_05875	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_05880	PF02050	Flagellar FliJ protein
AL539_05885	PF00089	Trypsin
AL539_05890	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_05890	PF03466	LysR substrate binding domain
AL539_05895	PF00892	EamA-like transporter family
AL539_05900	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
AL539_05910	PF07361	Cytochrome b562
AL539_05920	PF03929	AL539_05920
AL539_05925	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_05930	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_05930	PF03466	LysR substrate binding domain
AL539_05940	PF06468	Spondin_N
AL539_05945	PF06468	Spondin_N
AL539_05950	PF00072	Response regulator receiver domain
AL539_05950	PF00486	Transcriptional regulatory protein, C terminal
AL539_05955	PF00512	His Kinase A (phospho-acceptor) domain
AL539_05960	PF00080	Copper/zinc superoxide dismutase (SODC)
AL539_05965	PF00266	Aminotransferase class-V
AL539_05970	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_05975	PF00563	EAL domain
AL539_05975	PF00990	GGDEF domain
AL539_05980	PF00155	Aminotransferase class I and II
AL539_05985	PF00107	Zinc-binding dehydrogenase
AL539_05985	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_05990	PF05229	AL539_05990
AL539_05995	PF05229	AL539_05995
AL539_06000	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AL539_06005	PF00577	Outer membrane usher protein
AL539_06010	PF05229	AL539_06010
AL539_06015	PF00194	Eukaryotic-type carbonic anhydrase
AL539_06020	PF00924	Mechanosensitive ion channel
AL539_06030	PF01070	FMN-dependent dehydrogenase
AL539_06035	PF02652	AL539_06035
AL539_06040	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_06040	PF03466	LysR substrate binding domain
AL539_06045	PF00326	Prolyl oligopeptidase family
AL539_06045	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL539_06050	PF00005	ABC transporter
AL539_06050	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_06060	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL539_06060	PF13654	AAA domain
AL539_06065	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_06065	PF00672	HAMP domain
AL539_06070	PF13609	Gram-negative porin
AL539_06075	PF07238	PilZ domain
AL539_06075	PF12945	Flagellar protein YcgR
AL539_06080	PF14542	GCN5-related N-acetyl-transferase
AL539_06085	PF02958	Ecdysteroid kinase
AL539_06090	PF00583	Acetyltransferase (GNAT) family
AL539_06095	PF12800	4Fe-4S binding domain
AL539_06095	PF12838	4Fe-4S dicluster domain
AL539_06100	PF12801	AL539_06100
AL539_06100	PF13187	4Fe-4S dicluster domain
AL539_06105	PF07690	Major Facilitator Superfamily
AL539_06110	PF14145	AL539_06110
AL539_06115	PF02361	Cobalt transport protein
AL539_06120	PF00005	ABC transporter
AL539_06120	PF12558	AL539_06120
AL539_06125	PF07155	ECF-type riboflavin transporter, S component
AL539_06130	PF13533	Biotin-lipoyl like
AL539_06135	PF11742	AL539_06135
AL539_06140	PF00990	GGDEF domain
AL539_06155	PF01048	Phosphorylase superfamily
AL539_06160	PF04463	AL539_06160
AL539_06160	PF08349	AL539_06160
AL539_06165	PF13411	MerR HTH family regulatory protein
AL539_06170	PF00875	DNA photolyase
AL539_06170	PF03441	FAD binding domain of DNA photolyase
AL539_06175	PF01476	LysM domain
AL539_06175	PF03734	L,D-transpeptidase catalytic domain
AL539_06180	PF04728	Lipoprotein leucine-zipper
AL539_06185	PF00270	DEAD/DEAH box helicase
AL539_06185	PF00271	Helicase conserved C-terminal domain
AL539_06190	PF00326	Prolyl oligopeptidase family
AL539_06190	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL539_06195	PF00593	TonB dependent receptor
AL539_06195	PF07715	TonB-dependent Receptor Plug Domain
AL539_06200	PF01483	Proprotein convertase P-domain
AL539_06205	PF07603	AL539_06205
AL539_06210	PF07603	AL539_06210
AL539_06215	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_06215	PF00672	HAMP domain
AL539_06220	PF12849	PBP superfamily domain
AL539_06225	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_06230	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_06235	PF00005	ABC transporter
AL539_06240	PF00990	GGDEF domain
AL539_06245	PF13584	AL539_06245
AL539_06250	PF13519	von Willebrand factor type A domain
AL539_06255	PF00092	von Willebrand factor type A domain
AL539_06260	PF14316	AL539_06260
AL539_06265	PF01882	AL539_06265
AL539_06270	PF07726	ATPase family associated with various cellular activities (AAA)
AL539_06275	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_06275	PF00672	HAMP domain
AL539_06285	PF00196	Bacterial regulatory proteins, luxR family
AL539_06290	PF00196	Bacterial regulatory proteins, luxR family
AL539_06295	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
AL539_06300	PF00005	ABC transporter
AL539_06305	PF13437	HlyD family secretion protein
AL539_06305	PF13533	Biotin-lipoyl like
AL539_06310	PF00924	Mechanosensitive ion channel
AL539_06315	PF01032	FecCD transport family
AL539_06320	PF01497	Periplasmic binding protein
AL539_06325	PF00005	ABC transporter
AL539_06335	PF00005	ABC transporter
AL539_06335	PF00664	ABC transporter transmembrane region
AL539_06340	PF00512	His Kinase A (phospho-acceptor) domain
AL539_06340	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_06340	PF13493	Domain of unknown function (DUF4118)
AL539_06345	PF00072	Response regulator receiver domain
AL539_06345	PF00486	Transcriptional regulatory protein, C terminal
AL539_06350	PF02254	TrkA-N domain
AL539_06355	PF02386	Cation transport protein
AL539_06360	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_06360	PF03466	LysR substrate binding domain
AL539_06365	PF02028	BCCT family transporter
AL539_06370	PF00355	Rieske [2Fe-2S] domain
AL539_06370	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
AL539_06375	PF00171	Aldehyde dehydrogenase family
AL539_06380	PF00301	Rubredoxin
AL539_06380	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_06385	PF01266	FAD dependent oxidoreductase
AL539_06390	PF06249	Ethanolamine utilisation protein EutQ
AL539_06395	PF00127	Copper binding proteins, plastocyanin/azurin family
AL539_06400	PF13419	Haloacid dehalogenase-like hydrolase
AL539_06410	PF00158	Sigma-54 interaction domain
AL539_06410	PF01590	GAF domain
AL539_06415	PF00258	Flavodoxin
AL539_06415	PF00301	Rubredoxin
AL539_06415	PF00753	Metallo-beta-lactamase superfamily
AL539_06420	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_06425	PF09313	Domain of unknown function (DUF1971)
AL539_06430	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_06430	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL539_06435	PF00199	Catalase
AL539_06435	PF06628	Catalase-related immune-responsive
AL539_06440	PF00043	Glutathione S-transferase, C-terminal domain
AL539_06440	PF02798	Glutathione S-transferase, N-terminal domain
AL539_06445	PF00107	Zinc-binding dehydrogenase
AL539_06445	PF16884	AL539_06445
AL539_06450	PF00440	Bacterial regulatory proteins, tetR family
AL539_06450	PF16925	AL539_06450
AL539_06455	PF04266	ASCH domain
AL539_06460	PF04892	AL539_06460
AL539_06465	PF01943	AL539_06465
AL539_06465	PF14667	Polysaccharide biosynthesis C-terminal domain
AL539_06470	PF13579	Glycosyl transferase 4-like domain
AL539_06470	PF13692	Glycosyl transferases group 1
AL539_06475	PF10364	AL539_06475
AL539_06480	PF04932	AL539_06480
AL539_06485	PF00534	Glycosyl transferases group 1
AL539_06485	PF13439	Glycosyltransferase Family 4
AL539_06490	PF10364	AL539_06490
AL539_06495	PF02706	Chain length determinant protein
AL539_06495	PF13614	AAA domain
AL539_06495	PF13807	AL539_06495
AL539_06500	PF02563	Polysaccharide biosynthesis/export protein
AL539_06500	PF10531	SLBB domain
AL539_06505	PF10082	AL539_06505
AL539_06510	PF02397	AL539_06510
AL539_06510	PF13727	CoA-binding domain
AL539_06515	PF00005	ABC transporter
AL539_06515	PF08402	TOBE domain
AL539_06520	PF13416	Bacterial extracellular solute-binding protein
AL539_06525	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_06525	PF14785	Maltose transport system permease protein MalF P2 domain
AL539_06530	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_06540	PF03061	Thioesterase superfamily
AL539_06545	PF00892	EamA-like transporter family
AL539_06550	PF12833	Helix-turn-helix domain
AL539_06555	PF00005	ABC transporter
AL539_06560	PF00005	ABC transporter
AL539_06560	PF00664	ABC transporter transmembrane region
AL539_06565	PF00593	TonB dependent receptor
AL539_06565	PF07715	TonB-dependent Receptor Plug Domain
AL539_06570	PF01497	Periplasmic binding protein
AL539_06575	PF01032	FecCD transport family
AL539_06580	PF01032	FecCD transport family
AL539_06585	PF00246	Zinc carboxypeptidase
AL539_06590	PF05661	AL539_06590
AL539_06595	PF01979	Amidohydrolase family
AL539_06605	PF01679	AL539_06605
AL539_06610	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_06610	PF00175	Oxidoreductase NAD-binding domain
AL539_06610	PF00970	Oxidoreductase FAD-binding domain
AL539_06610	PF03473	MOSC domain
AL539_06610	PF03476	MOSC N-terminal beta barrel domain
AL539_06615	PF02540	NAD synthase
AL539_06620	PF01467	Cytidylyltransferase
AL539_06635	PF01553	Acyltransferase
AL539_06645	PF07383	AL539_06645
AL539_06650	PF04175	Protein of unknown function (DUF406)
AL539_06660	PF00005	ABC transporter
AL539_06665	PF01032	FecCD transport family
AL539_06670	PF01497	Periplasmic binding protein
AL539_06675	PF02472	Biopolymer transport protein ExbD/TolR
AL539_06680	PF01618	AL539_06680
AL539_06685	PF03544	Gram-negative bacterial TonB protein C-terminal
AL539_06690	PF04055	Radical SAM superfamily
AL539_06695	PF06228	Haem utilisation ChuX/HutX
AL539_06700	PF01243	Pyridoxamine 5'-phosphate oxidase
AL539_06705	PF01923	Cobalamin adenosyltransferase
AL539_06710	PF00072	Response regulator receiver domain
AL539_06710	PF01584	CheW-like domain
AL539_06715	PF13616	PPIC-type PPIASE domain
AL539_06720	PF01554	MatE
AL539_06725	PF00005	ABC transporter
AL539_06730	PF00005	ABC transporter
AL539_06735	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_06740	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_06745	PF00455	AL539_06745
AL539_06745	PF08220	DeoR-like helix-turn-helix domain
AL539_06750	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_06750	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL539_06755	PF07005	Protein of unknown function, DUF1537
AL539_06755	PF17042	AL539_06755
AL539_06760	PF00596	Class II Aldolase and Adducin N-terminal domain
AL539_06765	PF01261	Xylose isomerase-like TIM barrel
AL539_06770	PF01370	NAD dependent epimerase/dehydratase family
AL539_06775	PF02447	AL539_06775
AL539_06780	PF02583	Metal-sensitive transcriptional repressor
AL539_06785	PF03824	AL539_06785
AL539_06795	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_06795	PF00672	HAMP domain
AL539_06795	PF17203	AL539_06795
AL539_06800	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_06800	PF03466	LysR substrate binding domain
AL539_06805	PF01039	Carboxyl transferase domain
AL539_06815	PF01752	Collagenase
AL539_06815	PF04151	Bacterial pre-peptidase C-terminal domain
AL539_06815	PF08453	Peptidase family M9 N-terminal
AL539_06820	PF09016	Pas factor saposin fold
AL539_06825	PF02627	Carboxymuconolactone decarboxylase family
AL539_06830	PF13411	MerR HTH family regulatory protein
AL539_06835	PF00128	Alpha amylase, catalytic domain
AL539_06840	PF12840	Helix-turn-helix domain
AL539_06850	PF00999	Sodium/hydrogen exchanger family
AL539_06850	PF02254	TrkA-N domain
AL539_06855	PF02525	Flavodoxin-like fold
AL539_06860	PF00582	Universal stress protein family
AL539_06865	PF00005	ABC transporter
AL539_06870	PF00326	Prolyl oligopeptidase family
AL539_06870	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL539_06880	PF13437	HlyD family secretion protein
AL539_06880	PF13533	Biotin-lipoyl like
AL539_06885	PF00873	AcrB/AcrD/AcrF family
AL539_06890	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_06900	PF13302	Acetyltransferase (GNAT) domain
AL539_06910	PF00990	GGDEF domain
AL539_06910	PF01590	GAF domain
AL539_06915	PF13354	Beta-lactamase enzyme family
AL539_06925	PF00873	AcrB/AcrD/AcrF family
AL539_06930	PF11604	Copper binding periplasmic protein CusF
AL539_06930	PF16576	AL539_06930
AL539_06935	PF02321	Outer membrane efflux protein
AL539_06945	PF00037	4Fe-4S binding domain
AL539_06945	PF00384	Molybdopterin oxidoreductase
AL539_06945	PF01568	Molydopterin dinucleotide binding domain
AL539_06945	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL539_06945	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_06945	PF13510	2Fe-2S iron-sulfur cluster binding domain
AL539_06945	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL539_06955	PF12698	ABC-2 family transporter protein
AL539_06960	PF00005	ABC transporter
AL539_06965	PF13437	HlyD family secretion protein
AL539_06970	PF02567	Phenazine biosynthesis-like protein
AL539_06975	PF01161	Phosphatidylethanolamine-binding protein
AL539_06980	PF12833	Helix-turn-helix domain
AL539_06985	PF01758	Sodium Bile acid symporter family
AL539_06990	PF01022	Bacterial regulatory protein, arsR family
AL539_06995	PF02525	Flavodoxin-like fold
AL539_07000	PF01638	HxlR-like helix-turn-helix
AL539_07010	PF13737	AL539_07010
AL539_07015	PF08534	Redoxin
AL539_07020	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_07020	PF12793	AL539_07020
AL539_07025	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_07025	PF03466	LysR substrate binding domain
AL539_07030	PF00248	Aldo/keto reductase family
AL539_07035	PF03928	Domain of unknown function (DUF336)
AL539_07045	PF13560	Helix-turn-helix domain
AL539_07055	PF03222	Tryptophan/tyrosine permease family
AL539_07065	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_07065	PF00672	HAMP domain
AL539_07065	PF02743	Cache domain
AL539_07070	PF07670	Nucleoside recognition
AL539_07080	PF06912	AL539_07080
AL539_07085	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_07095	PF01551	Peptidase family M23
AL539_07095	PF04225	Opacity-associated protein A LysM-like domain
AL539_07100	PF00563	EAL domain
AL539_07100	PF00990	GGDEF domain
AL539_07105	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_07105	PF03466	LysR substrate binding domain
AL539_07110	PF07690	Major Facilitator Superfamily
AL539_07125	PF00462	Glutaredoxin
AL539_07130	PF00892	EamA-like transporter family
AL539_07135	PF13609	Gram-negative porin
AL539_07140	PF13609	Gram-negative porin
AL539_07145	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL539_07150	PF05437	AL539_07150
AL539_07155	PF03591	AL539_07155
AL539_07160	PF02311	AraC-like ligand binding domain
AL539_07160	PF12833	Helix-turn-helix domain
AL539_07165	PF01810	AL539_07165
AL539_07170	PF00583	Acetyltransferase (GNAT) family
AL539_07175	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL539_07175	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL539_07175	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL539_07175	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL539_07180	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AL539_07180	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
AL539_07180	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL539_07185	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL539_07190	PF04442	Cytochrome c oxidase assembly protein CtaG/Cox11
AL539_07195	PF00510	Cytochrome c oxidase subunit III
AL539_07200	PF11137	AL539_07200
AL539_07205	PF02104	AL539_07205
AL539_07215	PF02628	AL539_07215
AL539_07220	PF01040	UbiA prenyltransferase family
AL539_07225	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_07225	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL539_07230	PF13462	Thioredoxin
AL539_07235	PF00691	OmpA family
AL539_07240	PF00462	Glutaredoxin
AL539_07250	PF07152	YaeQ protein
AL539_07255	PF00313	'Cold-shock' DNA-binding domain
AL539_07260	PF03889	AL539_07260
AL539_07265	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_07265	PF00990	GGDEF domain
AL539_07270	PF00140	Sigma-70 factor, region 1
AL539_07270	PF04542	Sigma-70 region 2
AL539_07270	PF04545	Sigma-70, region 4
AL539_07280	PF00005	ABC transporter
AL539_07280	PF00664	ABC transporter transmembrane region
AL539_07285	PF00005	ABC transporter
AL539_07285	PF00664	ABC transporter transmembrane region
AL539_07290	PF02321	Outer membrane efflux protein
AL539_07295	PF00072	Response regulator receiver domain
AL539_07300	PF13437	HlyD family secretion protein
AL539_07320	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_07320	PF00672	HAMP domain
AL539_07320	PF12729	AL539_07320
AL539_07325	PF00210	Ferritin-like domain
AL539_07330	PF13419	Haloacid dehalogenase-like hydrolase
AL539_07335	PF07995	Glucose / Sorbosone dehydrogenase
AL539_07340	PF00465	Iron-containing alcohol dehydrogenase
AL539_07350	PF00892	EamA-like transporter family
AL539_07355	PF01545	Cation efflux family
AL539_07360	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_07360	PF03466	LysR substrate binding domain
AL539_07365	PF13489	Methyltransferase domain
AL539_07370	PF00501	AMP-binding enzyme
AL539_07375	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
AL539_07380	PF01329	Pterin 4 alpha carbinolamine dehydratase
AL539_07390	PF08888	HopJ type III effector protein
AL539_07395	PF06945	AL539_07395
AL539_07395	PF14375	AL539_07395
AL539_07400	PF12843	AL539_07400
AL539_07405	PF00239	Resolvase, N terminal domain
AL539_07405	PF07508	Recombinase
AL539_07415	PF01051	Initiator Replication protein
AL539_07440	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL539_07440	PF04851	Type III restriction enzyme, res subunit
AL539_07440	PF11867	AL539_07440
AL539_07455	PF01420	Type I restriction modification DNA specificity domain
AL539_07460	PF02384	N-6 DNA Methylase
AL539_07460	PF12161	HsdM N-terminal domain
AL539_07465	PF00589	Phage integrase family
AL539_07500	PF01906	Putative heavy-metal-binding
AL539_07515	PF12358	AL539_07515
AL539_07580	PF09905	Uncharacterized conserved protein (DUF2132)
AL539_07585	PF11840	AL539_07585
AL539_07590	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_07600	PF00313	'Cold-shock' DNA-binding domain
AL539_07610	PF01470	Pyroglutamyl peptidase
AL539_07620	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL539_07625	PF00270	DEAD/DEAH box helicase
AL539_07625	PF00271	Helicase conserved C-terminal domain
AL539_07640	PF01614	Bacterial transcriptional regulator
AL539_07640	PF08279	HTH domain
AL539_07645	PF00563	EAL domain
AL539_07645	PF12792	AL539_07645
AL539_07650	PF00005	ABC transporter
AL539_07655	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_07655	PF08447	PAS fold
AL539_07665	PF01575	MaoC like domain
AL539_07670	PF12849	PBP superfamily domain
AL539_07675	PF11225	AL539_07675
AL539_07680	PF12833	Helix-turn-helix domain
AL539_07685	PF00575	S1 RNA binding domain
AL539_07685	PF00773	RNB domain
AL539_07685	PF08206	Ribonuclease B OB domain
AL539_07690	PF00270	DEAD/DEAH box helicase
AL539_07690	PF00271	Helicase conserved C-terminal domain
AL539_07690	PF03880	DbpA RNA binding domain
AL539_07705	PF00871	Acetokinase family
AL539_07710	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_07710	PF03466	LysR substrate binding domain
AL539_07715	PF01738	Dienelactone hydrolase family
AL539_07720	PF02129	X-Pro dipeptidyl-peptidase (S15 family)
AL539_07735	PF01925	AL539_07735
AL539_07740	PF02311	AraC-like ligand binding domain
AL539_07740	PF12833	Helix-turn-helix domain
AL539_07745	PF08856	AL539_07745
AL539_07750	PF01475	Ferric uptake regulator family
AL539_07755	PF01979	Amidohydrolase family
AL539_07760	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_07765	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL539_07770	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_07775	PF01551	Peptidase family M23
AL539_07775	PF04225	Opacity-associated protein A LysM-like domain
AL539_07785	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL539_07785	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL539_07790	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL539_07790	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL539_07795	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL539_07805	PF01914	AL539_07805
AL539_07810	PF06146	AL539_07810
AL539_07820	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_07820	PF08447	PAS fold
AL539_07820	PF13426	PAS domain
AL539_07825	PF00892	EamA-like transporter family
AL539_07830	PF00682	HMGL-like
AL539_07835	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_07840	PF01039	Carboxyl transferase domain
AL539_07845	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_07845	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_07845	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_07850	PF00376	MerR family regulatory protein
AL539_07850	PF09278	MerR, DNA binding
AL539_07855	PF00108	Thiolase, N-terminal domain
AL539_07855	PF02803	Thiolase, C-terminal domain
AL539_07860	PF00171	Aldehyde dehydrogenase family
AL539_07865	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_07865	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_07865	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_07870	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_07875	PF16113	AL539_07875
AL539_07880	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_07880	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL539_07885	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_07890	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AL539_07890	PF06481	COX Aromatic Rich Motif
AL539_07895	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL539_07900	PF00510	Cytochrome c oxidase subunit III
AL539_07905	PF03626	AL539_07905
AL539_07910	PF01040	UbiA prenyltransferase family
AL539_07915	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_07920	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_07920	PF03466	LysR substrate binding domain
AL539_07925	PF01042	Endoribonuclease L-PSP
AL539_07930	PF00171	Aldehyde dehydrogenase family
AL539_07935	PF01244	Membrane dipeptidase (Peptidase family M19)
AL539_07940	PF02028	BCCT family transporter
AL539_07950	PF12525	AL539_07950
AL539_07955	PF12680	SnoaL-like domain
AL539_07960	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL539_07970	PF00005	ABC transporter
AL539_07975	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_07980	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_07985	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_07990	PF00775	Dioxygenase
AL539_07995	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_07995	PF03466	LysR substrate binding domain
AL539_08000	PF13417	Glutathione S-transferase, N-terminal domain
AL539_08005	PF01965	DJ-1/PfpI family
AL539_08010	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_08010	PF03466	LysR substrate binding domain
AL539_08015	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AL539_08015	PF13450	NAD(P)-binding Rossmann-like domain
AL539_08020	PF00766	Electron transfer flavoprotein FAD-binding domain
AL539_08020	PF01012	Electron transfer flavoprotein domain
AL539_08025	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL539_08025	PF00364	Biotin-requiring enzyme
AL539_08025	PF02817	e3 binding domain
AL539_08030	PF02779	Transketolase, pyrimidine binding domain
AL539_08030	PF02780	Transketolase, C-terminal domain
AL539_08035	PF00676	Dehydrogenase E1 component
AL539_08040	PF08883	Dopa 4,5-dioxygenase family
AL539_08050	PF00012	Hsp70 protein
AL539_08055	PF04314	Protein of unknown function (DUF461)
AL539_08090	PF00072	Response regulator receiver domain
AL539_08090	PF00486	Transcriptional regulatory protein, C terminal
AL539_08095	PF00512	His Kinase A (phospho-acceptor) domain
AL539_08100	PF06445	GyrI-like small molecule binding domain
AL539_08100	PF10604	Polyketide cyclase / dehydrase and lipid transport
AL539_08110	PF00082	Subtilase family
AL539_08110	PF01483	Proprotein convertase P-domain
AL539_08120	PF00990	GGDEF domain
AL539_08120	PF13374	Tetratricopeptide repeat
AL539_08130	PF03222	Tryptophan/tyrosine permease family
AL539_08135	PF00583	Acetyltransferase (GNAT) family
AL539_08140	PF00384	Molybdopterin oxidoreductase
AL539_08140	PF01568	Molydopterin dinucleotide binding domain
AL539_08140	PF04324	BFD-like [2Fe-2S] binding domain
AL539_08140	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL539_08145	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL539_08150	PF00591	Glycosyl transferase family, a/b domain
AL539_08150	PF02885	Glycosyl transferase family, helical bundle domain
AL539_08155	PF01738	Dienelactone hydrolase family
AL539_08160	PF03861	ANTAR domain
AL539_08170	PF13379	NMT1-like family
AL539_08185	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_08190	PF00005	ABC transporter
AL539_08195	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL539_08195	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL539_08195	PF04324	BFD-like [2Fe-2S] binding domain
AL539_08195	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_08200	PF13806	Rieske-like [2Fe-2S] domain
AL539_08205	PF03479	Domain of unknown function (DUF296)
AL539_08210	PF00440	Bacterial regulatory proteins, tetR family
AL539_08215	PF00043	Glutathione S-transferase, C-terminal domain
AL539_08215	PF13417	Glutathione S-transferase, N-terminal domain
AL539_08225	PF00072	Response regulator receiver domain
AL539_08225	PF07228	Stage II sporulation protein E (SpoIIE)
AL539_08230	PF13581	Histidine kinase-like ATPase domain
AL539_08240	PF01627	Hpt domain
AL539_08245	PF00069	Protein kinase domain
AL539_08250	PF00498	FHA domain
AL539_08255	PF12790	Type VI secretion lipoprotein
AL539_08265	PF00563	EAL domain
AL539_08270	PF09673	AL539_08270
AL539_08275	PF10502	Signal peptidase, peptidase S26
AL539_08290	PF01609	Transposase DDE domain
AL539_08290	PF13340	AL539_08290
AL539_08300	PF10411	Disulfide bond isomerase protein N-terminus
AL539_08300	PF13098	Thioredoxin-like domain
AL539_08305	PF13750	AL539_08305
AL539_08305	PF13752	AL539_08305
AL539_08310	PF04956	AL539_08310
AL539_08315	PF04956	AL539_08315
AL539_08320	PF09676	AL539_08320
AL539_08325	PF03743	Bacterial conjugation TrbI-like protein
AL539_08330	PF06586	AL539_08330
AL539_08335	PF05309	AL539_08335
AL539_08340	PF07178	AL539_08340
AL539_08350	PF14348	AL539_08350
AL539_08360	PF12696	TraM recognition site of TraD and TraG
AL539_08360	PF12846	AAA-like domain
AL539_08365	PF07514	Putative helicase
AL539_08385	PF01131	DNA topoisomerase
AL539_08385	PF01396	AL539_08385
AL539_08385	PF01751	Toprim domain
AL539_08395	PF13737	AL539_08395
AL539_08465	PF02652	AL539_08465
AL539_08470	PF02754	AL539_08470
AL539_08475	PF02589	Uncharacterised ACR, YkgG family COG1556
AL539_08475	PF11870	AL539_08475
AL539_08475	PF13183	4Fe-4S dicluster domain
AL539_08480	PF02589	Uncharacterised ACR, YkgG family COG1556
AL539_08485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_08485	PF03466	LysR substrate binding domain
AL539_08490	PF08447	PAS fold
AL539_08500	PF00665	Integrase core domain
AL539_08500	PF13936	Helix-turn-helix domain
AL539_08545	PF09904	Winged helix-turn helix
AL539_08550	PF02195	ParB-like nuclease domain
AL539_08550	PF08535	KorB domain
AL539_08555	PF13614	AAA domain
AL539_08560	PF01863	Protein of unknown function DUF45
AL539_08565	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL539_08565	PF04851	Type III restriction enzyme, res subunit
AL539_08575	PF01420	Type I restriction modification DNA specificity domain
AL539_08580	PF02384	N-6 DNA Methylase
AL539_08580	PF12161	HsdM N-terminal domain
AL539_08585	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
AL539_08595	PF00589	Phage integrase family
AL539_08605	PF08238	Sel1 repeat
AL539_08610	PF01936	NYN domain
AL539_08610	PF12872	OST-HTH/LOTUS domain
AL539_08680	PF03527	AL539_08680
AL539_08690	PF03527	AL539_08690
AL539_08690	PF05593	AL539_08690
AL539_08695	PF13481	AAA domain
AL539_08705	PF01325	Iron dependent repressor, N-terminal DNA binding domain
AL539_08710	PF13358	DDE superfamily endonuclease
AL539_08710	PF13565	AL539_08710
AL539_08750	PF00565	Staphylococcal nuclease homologue
AL539_08765	PF13462	Thioredoxin
AL539_08770	PF01343	Peptidase family S49
AL539_08840	PF05280	Flagellar transcriptional activator (FlhC)
AL539_08850	PF01464	Transglycosylase SLT domain
AL539_08855	PF13693	Winged helix-turn-helix DNA-binding
AL539_08865	PF07916	AL539_08865
AL539_08870	PF06122	AL539_08870
AL539_08875	PF13728	F plasmid transfer operon protein
AL539_08880	PF00580	UvrD/REP helicase N-terminal domain
AL539_08880	PF13361	UvrD-like helicase C-terminal domain
AL539_08885	PF07603	AL539_08885
AL539_08890	PF03160	Calx-beta domain
AL539_08890	PF07603	AL539_08890
AL539_08905	PF13878	AL539_08905
AL539_08910	PF05472	DNA replication terminus site-binding protein (Ter protein)
AL539_08920	PF01695	IstB-like ATP binding protein
AL539_08925	PF03050	AL539_08925
AL539_08925	PF13005	AL539_08925
AL539_08925	PF13007	AL539_08925
AL539_08925	PF13817	AL539_08925
AL539_08930	PF05717	AL539_08930
AL539_08950	PF00589	Phage integrase family
AL539_08970	PF06496	AL539_08970
AL539_08975	PF09370	TIM-barrel signal transduction protein
AL539_08980	PF06792	Uncharacterised protein family (UPF0261)
AL539_08985	PF00440	Bacterial regulatory proteins, tetR family
AL539_08990	PF00717	Peptidase S24-like
AL539_08995	PF00589	Phage integrase family
AL539_09005	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
AL539_09010	PF02384	N-6 DNA Methylase
AL539_09010	PF12161	HsdM N-terminal domain
AL539_09015	PF01420	Type I restriction modification DNA specificity domain
AL539_09020	PF01926	50S ribosome-binding GTPase
AL539_09025	PF01926	50S ribosome-binding GTPase
AL539_09030	PF14281	AL539_09030
AL539_09035	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL539_09035	PF04851	Type III restriction enzyme, res subunit
AL539_09040	PF01863	Protein of unknown function DUF45
AL539_09060	PF00436	Single-strand binding protein family
AL539_09065	PF03837	AL539_09065
AL539_09070	PF09588	YqaJ-like viral recombinase domain
AL539_09075	PF07728	AAA domain (dynein-related subfamily)
AL539_09075	PF08406	AL539_09075
AL539_09085	PF11348	AL539_09085
AL539_09095	PF00092	von Willebrand factor type A domain
AL539_09100	PF04002	RadC-like JAB domain
AL539_09110	PF08273	Zinc-binding domain of primase-helicase
AL539_09110	PF13362	Toprim domain
AL539_09120	PF00483	Nucleotidyl transferase
AL539_09130	PF03350	AL539_09130
AL539_09135	PF01548	AL539_09135
AL539_09135	PF02371	AL539_09135
AL539_09140	PF00239	Resolvase, N terminal domain
AL539_09140	PF13384	Homeodomain-like domain
AL539_09145	PF05973	AL539_09145
AL539_09150	PF13744	Helix-turn-helix domain
AL539_09165	PF07205	AL539_09165
AL539_09180	PF11740	AL539_09180
AL539_09195	PF00589	Phage integrase family
AL539_09200	PF00782	Dual specificity phosphatase, catalytic domain
AL539_09220	PF01381	Helix-turn-helix
AL539_09245	PF08273	Zinc-binding domain of primase-helicase
AL539_09245	PF13362	Toprim domain
AL539_09275	PF13023	HD domain
AL539_09335	PF01206	Sulfurtransferase TusA
AL539_09370	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_09385	PF11284	AL539_09385
AL539_09405	PF06213	AL539_09405
AL539_09405	PF13519	von Willebrand factor type A domain
AL539_09410	PF11348	AL539_09410
AL539_09415	PF09588	YqaJ-like viral recombinase domain
AL539_09420	PF03837	AL539_09420
AL539_09430	PF07728	AAA domain (dynein-related subfamily)
AL539_09430	PF08406	AL539_09430
AL539_09450	PF08900	AL539_09450
AL539_09460	PF01609	Transposase DDE domain
AL539_09460	PF13808	AL539_09460
AL539_09475	PF06986	AL539_09475
AL539_09485	PF06610	AL539_09485
AL539_09495	PF02322	AL539_09495
AL539_09500	PF01654	AL539_09500
AL539_09510	PF11557	AL539_09510
AL539_09515	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_09515	PF00672	HAMP domain
AL539_09520	PF16576	AL539_09520
AL539_09525	PF00873	AcrB/AcrD/AcrF family
AL539_09530	PF01047	MarR family
AL539_09535	PF03547	AL539_09535
AL539_09540	PF00579	tRNA synthetases class I (W and Y)
AL539_09550	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_09560	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_09560	PF12729	AL539_09560
AL539_09570	PF06175	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
AL539_09575	PF13599	Pentapeptide repeats (9 copies)
AL539_09595	PF08401	AL539_09595
AL539_09640	PF02384	N-6 DNA Methylase
AL539_09660	PF02954	Bacterial regulatory protein, Fis family
AL539_09670	PF11140	AL539_09670
AL539_09675	PF04851	Type III restriction enzyme, res subunit
AL539_09680	PF01555	DNA methylase
AL539_09690	PF00239	Resolvase, N terminal domain
AL539_09690	PF07508	Recombinase
AL539_09690	PF13408	Recombinase zinc beta ribbon domain
AL539_09705	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_09705	PF03466	LysR substrate binding domain
AL539_09710	PF13679	AL539_09710
AL539_09715	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL539_09715	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL539_09720	PF01037	AsnC family
AL539_09720	PF13412	Winged helix-turn-helix DNA-binding
AL539_09725	PF01580	FtsK/SpoIIIE family
AL539_09725	PF09397	Ftsk gamma domain
AL539_09725	PF13491	AL539_09725
AL539_09730	PF03548	Outer membrane lipoprotein carrier protein LolA
AL539_09735	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_09735	PF12002	MgsA AAA+ ATPase C terminal
AL539_09735	PF16193	AL539_09735
AL539_09740	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL539_09740	PF02403	Seryl-tRNA synthetase N-terminal domain
AL539_09745	PF11860	AL539_09745
AL539_09755	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL539_09760	PF00202	Aminotransferase class-III
AL539_09765	PF04055	Radical SAM superfamily
AL539_09765	PF06968	Biotin and Thiamin Synthesis associated domain
AL539_09770	PF00155	Aminotransferase class I and II
AL539_09775	PF08241	Methyltransferase domain
AL539_09780	PF13500	AAA domain
AL539_09790	PF01435	Peptidase family M48
AL539_09795	PF12680	SnoaL-like domain
AL539_09800	PF00106	short chain dehydrogenase
AL539_09805	PF01593	Flavin containing amine oxidoreductase
AL539_09810	PF07103	AL539_09810
AL539_09815	PF02353	Mycolic acid cyclopropane synthetase
AL539_09820	PF11086	AL539_09820
AL539_09825	PF16036	AL539_09825
AL539_09830	PF12915	AL539_09830
AL539_09835	PF00206	Lyase
AL539_09835	PF08328	Adenylosuccinate lyase C-terminal
AL539_09840	PF04356	Protein of unknown function (DUF489)
AL539_09845	PF03054	tRNA methyl transferase
AL539_09855	PF00294	pfkB family carbohydrate kinase
AL539_09860	PF00816	H-NS histone family
AL539_09865	PF03553	AL539_09865
AL539_09870	PF01634	ATP phosphoribosyltransferase
AL539_09870	PF08029	HisG, C-terminal domain
AL539_09875	PF00815	Histidinol dehydrogenase
AL539_09880	PF00155	Aminotransferase class I and II
AL539_09885	PF00475	Imidazoleglycerol-phosphate dehydratase
AL539_09885	PF08645	Polynucleotide kinase 3 phosphatase
AL539_09890	PF00117	Glutamine amidotransferase class-I
AL539_09895	PF00977	Histidine biosynthesis protein
AL539_09900	PF00977	Histidine biosynthesis protein
AL539_09905	PF01502	Phosphoribosyl-AMP cyclohydrolase
AL539_09905	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AL539_09910	PF02810	SEC-C motif
AL539_09915	PF00563	EAL domain
AL539_09915	PF08668	HDOD domain
AL539_09920	PF12850	Calcineurin-like phosphoesterase superfamily domain
AL539_09925	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL539_09930	PF01406	tRNA synthetases class I (C) catalytic domain
AL539_09930	PF09190	DALR domain
AL539_09935	PF00265	Thymidine kinase
AL539_09940	PF02698	DUF218 domain
AL539_09945	PF01370	NAD dependent epimerase/dehydratase family
AL539_09950	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_09950	PF03466	LysR substrate binding domain
AL539_09955	PF05232	AL539_09955
AL539_09960	PF06146	AL539_09960
AL539_09965	PF01226	Formate/nitrite transporter
AL539_09975	PF03649	AL539_09975
AL539_09980	PF06796	AL539_09980
AL539_09985	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL539_09990	PF00384	Molybdopterin oxidoreductase
AL539_09990	PF01568	Molydopterin dinucleotide binding domain
AL539_09995	PF02065	Melibiase
AL539_10000	PF11449	AL539_10000
AL539_10005	PF01368	DHH family
AL539_10005	PF02833	DHHA2 domain
AL539_10010	PF11042	AL539_10010
AL539_10015	PF00005	ABC transporter
AL539_10020	PF00005	ABC transporter
AL539_10020	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_10025	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_10025	PF12911	AL539_10025
AL539_10030	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_10035	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_10040	PF00158	Sigma-54 interaction domain
AL539_10040	PF02954	Bacterial regulatory protein, Fis family
AL539_10045	PF04012	AL539_10045
AL539_10050	PF06667	AL539_10050
AL539_10055	PF04024	AL539_10055
AL539_10060	PF16576	AL539_10060
AL539_10065	PF13437	HlyD family secretion protein
AL539_10065	PF13533	Biotin-lipoyl like
AL539_10070	PF00873	AcrB/AcrD/AcrF family
AL539_10075	PF03352	Methyladenine glycosylase
AL539_10080	PF03280	Proteobacterial lipase chaperone protein
AL539_10085	PF00561	alpha/beta hydrolase fold
AL539_10090	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL539_10095	PF13091	PLD-like domain
AL539_10095	PF13396	AL539_10095
AL539_10100	PF00209	Sodium:neurotransmitter symporter family
AL539_10105	PF00849	RNA pseudouridylate synthase
AL539_10110	PF10672	S-adenosylmethionine-dependent methyltransferase
AL539_10115	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_10115	PF00175	Oxidoreductase NAD-binding domain
AL539_10115	PF00970	Oxidoreductase FAD-binding domain
AL539_10120	PF03063	Prismane/CO dehydrogenase family
AL539_10125	PF00158	Sigma-54 interaction domain
AL539_10125	PF02954	Bacterial regulatory protein, Fis family
AL539_10135	PF05433	AL539_10135
AL539_10140	PF01066	CDP-alcohol phosphatidyltransferase
AL539_10145	PF00005	ABC transporter
AL539_10155	PF13416	Bacterial extracellular solute-binding protein
AL539_10160	PF03724	META domain
AL539_10165	PF06945	AL539_10165
AL539_10180	PF00149	Calcineurin-like phosphoesterase
AL539_10180	PF02872	5'-nucleotidase, C-terminal domain
AL539_10185	PF00583	Acetyltransferase (GNAT) family
AL539_10190	PF01386	Ribosomal L25p family
AL539_10195	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_10200	PF00072	Response regulator receiver domain
AL539_10200	PF00486	Transcriptional regulatory protein, C terminal
AL539_10210	PF00271	Helicase conserved C-terminal domain
AL539_10210	PF04851	Type III restriction enzyme, res subunit
AL539_10215	PF00849	RNA pseudouridylate synthase
AL539_10215	PF01479	S4 domain
AL539_10225	PF07690	Major Facilitator Superfamily
AL539_10230	PF11140	AL539_10230
AL539_10235	PF11066	AL539_10235
AL539_10235	PF13460	NADH(P)-binding
AL539_10240	PF01554	MatE
AL539_10245	PF00005	ABC transporter
AL539_10250	PF02687	AL539_10250
AL539_10255	PF07143	Hydroxyneurosporene synthase (CrtC)
AL539_10255	PF17186	AL539_10255
AL539_10260	PF06965	Na+/H+ antiporter 1
AL539_10265	PF00440	Bacterial regulatory proteins, tetR family
AL539_10270	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_10270	PF02770	Acyl-CoA dehydrogenase, middle domain
AL539_10270	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_10270	PF09317	AL539_10270
AL539_10275	PF07055	Enoyl reductase FAD binding domain
AL539_10275	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL539_10275	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL539_10280	PF02080	TrkA-C domain
AL539_10280	PF06826	AL539_10280
AL539_10285	PF00462	Glutaredoxin
AL539_10290	PF00465	Iron-containing alcohol dehydrogenase
AL539_10295	PF01380	SIS domain
AL539_10295	PF01418	Helix-turn-helix domain, rpiR family
AL539_10300	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL539_10310	PF03956	AL539_10310
AL539_10315	PF08668	HDOD domain
AL539_10330	PF04993	TfoX N-terminal domain
AL539_10330	PF04994	TfoX C-terminal domain
AL539_10340	PF00072	Response regulator receiver domain
AL539_10345	PF00027	Cyclic nucleotide-binding domain
AL539_10345	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_10350	PF06097	AL539_10350
AL539_10355	PF00266	Aminotransferase class-V
AL539_10360	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_10365	PF00005	ABC transporter
AL539_10365	PF00664	ABC transporter transmembrane region
AL539_10370	PF00005	ABC transporter
AL539_10370	PF00664	ABC transporter transmembrane region
AL539_10375	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_10380	PF10014	2OG-Fe dioxygenase
AL539_10385	PF00266	Aminotransferase class-V
AL539_10390	PF10977	AL539_10390
AL539_10395	PF00990	GGDEF domain
AL539_10395	PF08547	Complex I intermediate-associated protein 30 (CIA30)
AL539_10400	PF00939	Sodium:sulfate symporter transmembrane region
AL539_10405	PF02698	DUF218 domain
AL539_10410	PF00390	Malic enzyme, N-terminal domain
AL539_10410	PF03949	Malic enzyme, NAD binding domain
AL539_10415	PF00270	DEAD/DEAH box helicase
AL539_10415	PF00271	Helicase conserved C-terminal domain
AL539_10415	PF04408	Helicase associated domain (HA2)
AL539_10425	PF09423	PhoD-like phosphatase
AL539_10425	PF16655	AL539_10425
AL539_10430	PF01259	SAICAR synthetase
AL539_10435	PF03846	Cell division inhibitor SulA
AL539_10450	PF00691	OmpA family
AL539_10450	PF13488	AL539_10450
AL539_10455	PF10979	AL539_10455
AL539_10460	PF11813	AL539_10460
AL539_10465	PF01565	FAD binding domain
AL539_10465	PF02913	FAD linked oxidases, C-terminal domain
AL539_10465	PF13183	4Fe-4S dicluster domain
AL539_10470	PF04191	Phospholipid methyltransferase
AL539_10475	PF12119	AL539_10475
AL539_10480	PF00221	Aromatic amino acid lyase
AL539_10485	PF01175	Urocanase
AL539_10485	PF17391	AL539_10485
AL539_10485	PF17392	AL539_10485
AL539_10490	PF00491	Arginase family
AL539_10495	PF01979	Amidohydrolase family
AL539_10500	PF00392	Bacterial regulatory proteins, gntR family
AL539_10500	PF07702	UTRA domain
AL539_10505	PF07070	AL539_10505
AL539_10510	PF11383	AL539_10510
AL539_10515	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL539_10515	PF02824	TGS domain
AL539_10515	PF03129	Anticodon binding domain
AL539_10515	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL539_10520	PF00707	Translation initiation factor IF-3, C-terminal domain
AL539_10520	PF05198	Translation initiation factor IF-3, N-terminal domain
AL539_10525	PF01632	Ribosomal protein L35
AL539_10530	PF00453	Ribosomal protein L20
AL539_10535	PF01906	Putative heavy-metal-binding
AL539_10540	PF13443	Cro/C1-type HTH DNA-binding domain
AL539_10550	PF00440	Bacterial regulatory proteins, tetR family
AL539_10555	PF03176	MMPL family
AL539_10560	PF17131	AL539_10560
AL539_10570	PF01409	tRNA synthetases class II core domain (F)
AL539_10570	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
AL539_10575	PF01588	Putative tRNA binding domain
AL539_10575	PF03147	Ferredoxin-fold anticodon binding domain
AL539_10575	PF03483	B3/4 domain
AL539_10575	PF03484	tRNA synthetase B5 domain
AL539_10580	PF03547	AL539_10580
AL539_10585	PF00216	Bacterial DNA-binding protein
AL539_10595	PF05724	Thiopurine S-methyltransferase (TPMT)
AL539_10600	PF02222	ATP-grasp domain
AL539_10605	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_10605	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_10610	PF04172	AL539_10610
AL539_10615	PF03788	AL539_10615
AL539_10620	PF00929	Exonuclease
AL539_10620	PF08411	Exonuclease C-terminal
AL539_10625	PF00375	Sodium:dicarboxylate symporter family
AL539_10630	PF08732	AL539_10630
AL539_10635	PF02277	Phosphoribosyltransferase
AL539_10640	PF02654	AL539_10640
AL539_10645	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
AL539_10650	PF00300	Histidine phosphatase superfamily (branch 1)
AL539_10655	PF01432	Peptidase family M3
AL539_10655	PF08439	Oligopeptidase F
AL539_10660	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_10665	PF01032	FecCD transport family
AL539_10670	PF00005	ABC transporter
AL539_10675	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AL539_10680	PF07209	AL539_10680
AL539_10685	PF07690	Major Facilitator Superfamily
AL539_10690	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_10690	PF03466	LysR substrate binding domain
AL539_10695	PF00462	Glutaredoxin
AL539_10700	PF01863	Protein of unknown function DUF45
AL539_10705	PF05971	Protein of unknown function (DUF890)
AL539_10715	PF03572	Peptidase family S41
AL539_10725	PF00392	Bacterial regulatory proteins, gntR family
AL539_10725	PF07729	FCD domain
AL539_10730	PF00171	Aldehyde dehydrogenase family
AL539_10735	PF05544	Proline racemase
AL539_10740	PF01266	FAD dependent oxidoreductase
AL539_10745	PF13416	Bacterial extracellular solute-binding protein
AL539_10750	PF02423	Ornithine cyclodeaminase/mu-crystallin family
AL539_10755	PF00701	Dihydrodipicolinate synthetase family
AL539_10760	PF00005	ABC transporter
AL539_10760	PF08402	TOBE domain
AL539_10765	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_10770	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_10780	PF00801	PKD domain
AL539_10780	PF01752	Collagenase
AL539_10780	PF08453	Peptidase family M9 N-terminal
AL539_10785	PF00557	Metallopeptidase family M24
AL539_10785	PF01321	Creatinase/Prolidase N-terminal domain
AL539_10785	PF16188	AL539_10785
AL539_10785	PF16189	AL539_10785
AL539_10790	PF00005	ABC transporter
AL539_10790	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_10795	PF00005	ABC transporter
AL539_10795	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_10800	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_10800	PF12911	AL539_10800
AL539_10805	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_10810	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_10815	PF01546	Peptidase family M20/M25/M40
AL539_10815	PF07687	Peptidase dimerisation domain
AL539_10820	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_10820	PF14696	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
AL539_10825	PF04209	homogentisate 1,2-dioxygenase
AL539_10830	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL539_10835	PF13417	Glutathione S-transferase, N-terminal domain
AL539_10840	PF10881	AL539_10840
AL539_10920	PF14412	AL539_10920
AL539_10940	PF11665	AL539_10940
AL539_10980	PF08818	Domain of unknown function (DU1801)
AL539_10995	PF14234	AL539_10995
AL539_11000	PF03553	AL539_11000
AL539_11005	PF00120	Glutamine synthetase, catalytic domain
AL539_11015	PF07722	Peptidase C26
AL539_11020	PF01381	Helix-turn-helix
AL539_11020	PF07883	Cupin domain
AL539_11025	PF00171	Aldehyde dehydrogenase family
AL539_11030	PF01266	FAD dependent oxidoreductase
AL539_11035	PF00795	Carbon-nitrogen hydrolase
AL539_11040	PF04371	Porphyromonas-type peptidyl-arginine deiminase
AL539_11045	PF00171	Aldehyde dehydrogenase family
AL539_11050	PF00202	Aminotransferase class-III
AL539_11055	PF00563	EAL domain
AL539_11060	PF00892	EamA-like transporter family
AL539_11065	PF01047	MarR family
AL539_11070	PF04237	YjbR
AL539_11075	PF06127	AL539_11075
AL539_11095	PF00072	Response regulator receiver domain
AL539_11095	PF00512	His Kinase A (phospho-acceptor) domain
AL539_11095	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_11100	PF00563	EAL domain
AL539_11100	PF00990	GGDEF domain
AL539_11105	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AL539_11110	PF13431	Tetratricopeptide repeat
AL539_11115	PF04204	Homoserine O-succinyltransferase
AL539_11125	PF00893	Small Multidrug Resistance protein
AL539_11130	PF03279	AL539_11130
AL539_11135	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
AL539_11140	PF01810	AL539_11140
AL539_11150	PF01235	AL539_11150
AL539_11175	PF00884	Sulfatase
AL539_11180	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL539_11185	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_11190	PF00005	ABC transporter
AL539_11190	PF00571	CBS domain
AL539_11195	PF00027	Cyclic nucleotide-binding domain
AL539_11195	PF00571	CBS domain
AL539_11195	PF03445	AL539_11195
AL539_11195	PF10335	AL539_11195
AL539_11200	PF00929	Exonuclease
AL539_11205	PF02028	BCCT family transporter
AL539_11210	PF00583	Acetyltransferase (GNAT) family
AL539_11215	PF00202	Aminotransferase class-III
AL539_11220	PF06339	AL539_11220
AL539_11225	PF00696	Amino acid kinase family
AL539_11230	PF00884	Sulfatase
AL539_11230	PF14707	C-terminal region of aryl-sulfatase
AL539_11235	PF13414	TPR repeat
AL539_11235	PF13432	Tetratricopeptide repeat
AL539_11235	PF13435	Cytochrome c554 and c-prime
AL539_11240	PF03781	Sulfatase-modifying factor enzyme 1
AL539_11245	PF04055	Radical SAM superfamily
AL539_11245	PF13186	Iron-sulfur cluster-binding domain
AL539_11255	PF12710	haloacid dehalogenase-like hydrolase
AL539_11260	PF00884	Sulfatase
AL539_11265	PF00884	Sulfatase
AL539_11280	PF13437	HlyD family secretion protein
AL539_11285	PF02321	Outer membrane efflux protein
AL539_11290	PF00691	OmpA family
AL539_11300	PF00455	AL539_11300
AL539_11300	PF08220	DeoR-like helix-turn-helix domain
AL539_11305	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL539_11305	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AL539_11310	PF03928	Domain of unknown function (DUF336)
AL539_11315	PF00990	GGDEF domain
AL539_11315	PF02743	Cache domain
AL539_11320	PF12570	AL539_11320
AL539_11330	PF13673	Acetyltransferase (GNAT) domain
AL539_11335	PF00939	Sodium:sulfate symporter transmembrane region
AL539_11340	PF00027	Cyclic nucleotide-binding domain
AL539_11340	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_11345	PF00072	Response regulator receiver domain
AL539_11350	PF00563	EAL domain
AL539_11350	PF00990	GGDEF domain
AL539_11350	PF08447	PAS fold
AL539_11355	PF01966	HD domain
AL539_11355	PF11871	AL539_11355
AL539_11360	PF01810	AL539_11360
AL539_11365	PF11230	AL539_11365
AL539_11370	PF04055	Radical SAM superfamily
AL539_11370	PF13353	4Fe-4S single cluster domain
AL539_11375	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_11375	PF03466	LysR substrate binding domain
AL539_11380	PF03741	AL539_11380
AL539_11385	PF13640	2OG-Fe(II) oxygenase superfamily
AL539_11390	PF01966	HD domain
AL539_11395	PF00465	Iron-containing alcohol dehydrogenase
AL539_11400	PF03222	Tryptophan/tyrosine permease family
AL539_11405	PF13487	HD domain
AL539_11415	PF00005	ABC transporter
AL539_11420	PF01497	Periplasmic binding protein
AL539_11425	PF01032	FecCD transport family
AL539_11430	PF00593	TonB dependent receptor
AL539_11430	PF07715	TonB-dependent Receptor Plug Domain
AL539_11440	PF00005	ABC transporter
AL539_11440	PF00664	ABC transporter transmembrane region
AL539_11445	PF00005	ABC transporter
AL539_11445	PF00664	ABC transporter transmembrane region
AL539_11450	PF07963	Prokaryotic N-terminal methylation motif
AL539_11455	PF03616	AL539_11455
AL539_11460	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_11460	PF03466	LysR substrate binding domain
AL539_11465	PF03992	Antibiotic biosynthesis monooxygenase
AL539_11470	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL539_11475	PF03352	Methyladenine glycosylase
AL539_11485	PF00012	Hsp70 protein
AL539_11485	PF12531	AL539_11485
AL539_11490	PF00012	Hsp70 protein
AL539_11495	PF10816	AL539_11495
AL539_11500	PF00990	GGDEF domain
AL539_11500	PF03924	CHASE domain
AL539_11505	PF00929	Exonuclease
AL539_11510	PF05099	Tellurite resistance protein TerB
AL539_11515	PF09423	PhoD-like phosphatase
AL539_11525	PF06629	AL539_11525
AL539_11535	PF02525	Flavodoxin-like fold
AL539_11540	PF00270	DEAD/DEAH box helicase
AL539_11540	PF00271	Helicase conserved C-terminal domain
AL539_11540	PF04408	Helicase associated domain (HA2)
AL539_11540	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
AL539_11540	PF11898	AL539_11540
AL539_11545	PF13505	Outer membrane protein beta-barrel domain
AL539_11550	PF13505	Outer membrane protein beta-barrel domain
AL539_11555	PF02028	BCCT family transporter
AL539_11560	PF13671	AAA domain
AL539_11565	PF02397	AL539_11565
AL539_11570	PF13641	Glycosyltransferase like family 2
AL539_11575	PF00534	Glycosyl transferases group 1
AL539_11575	PF13439	Glycosyltransferase Family 4
AL539_11585	PF13692	Glycosyl transferases group 1
AL539_11590	PF04932	AL539_11590
AL539_11595	PF01943	AL539_11595
AL539_11600	PF00534	Glycosyl transferases group 1
AL539_11605	PF00534	Glycosyl transferases group 1
AL539_11605	PF13439	Glycosyltransferase Family 4
AL539_11610	PF13439	Glycosyltransferase Family 4
AL539_11610	PF13692	Glycosyl transferases group 1
AL539_11615	PF00072	Response regulator receiver domain
AL539_11615	PF00158	Sigma-54 interaction domain
AL539_11615	PF02954	Bacterial regulatory protein, Fis family
AL539_11620	PF01627	Hpt domain
AL539_11630	PF02563	Polysaccharide biosynthesis/export protein
AL539_11630	PF10531	SLBB domain
AL539_11635	PF00691	OmpA family
AL539_11640	PF13466	STAS domain
AL539_11645	PF01068	ATP dependent DNA ligase domain
AL539_11645	PF14743	DNA ligase OB-like domain
AL539_11650	PF11279	AL539_11650
AL539_11655	PF01554	MatE
AL539_11660	PF00677	Lumazine binding domain
AL539_11665	PF14255	AL539_11665
AL539_11670	PF03881	Fructosamine kinase
AL539_11675	PF00072	Response regulator receiver domain
AL539_11680	PF00990	GGDEF domain
AL539_11685	PF12290	AL539_11685
AL539_11690	PF00877	NlpC/P60 family
AL539_11695	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_11700	PF00293	NUDIX domain
AL539_11705	PF00293	NUDIX domain
AL539_11720	PF04116	AL539_11720
AL539_11725	PF03942	AL539_11725
AL539_11730	PF00480	ROK family
AL539_11735	PF11173	AL539_11735
AL539_11740	PF00994	Probable molybdopterin binding domain
AL539_11740	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
AL539_11740	PF03453	MoeA N-terminal region (domain I and II)
AL539_11740	PF03454	MoeA C-terminal region (domain IV)
AL539_11745	PF12804	MobA-like NTP transferase domain
AL539_11750	PF00005	ABC transporter
AL539_11755	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_11760	PF12849	PBP superfamily domain
AL539_11765	PF00072	Response regulator receiver domain
AL539_11765	PF00158	Sigma-54 interaction domain
AL539_11765	PF02954	Bacterial regulatory protein, Fis family
AL539_11770	PF00512	His Kinase A (phospho-acceptor) domain
AL539_11770	PF00672	HAMP domain
AL539_11770	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_11770	PF17202	AL539_11770
AL539_11780	PF00005	ABC transporter
AL539_11780	PF12848	ABC transporter
AL539_11785	PF02634	FdhD/NarQ family
AL539_11790	PF11749	AL539_11790
AL539_11795	PF11748	AL539_11795
AL539_11800	PF00037	4Fe-4S binding domain
AL539_11800	PF12838	4Fe-4S dicluster domain
AL539_11805	PF02613	Nitrate reductase delta subunit
AL539_11815	PF00384	Molybdopterin oxidoreductase
AL539_11815	PF01568	Molydopterin dinucleotide binding domain
AL539_11815	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL539_11820	PF13247	4Fe-4S dicluster domain
AL539_11825	PF01292	Prokaryotic cytochrome b561
AL539_11835	PF03527	AL539_11835
AL539_11835	PF05593	AL539_11835
AL539_11840	PF15575	AL539_11840
AL539_11855	PF15575	AL539_11855
AL539_11865	PF15575	AL539_11865
AL539_11870	PF15575	AL539_11870
AL539_11880	PF15575	AL539_11880
AL539_11885	PF15575	AL539_11885
AL539_11895	PF15575	AL539_11895
AL539_11900	PF15575	AL539_11900
AL539_11910	PF15575	AL539_11910
AL539_11915	PF14567	SMI1-KNR4 cell-wall
AL539_11920	PF15575	AL539_11920
AL539_11950	PF12796	Ankyrin repeats (3 copies)
AL539_11955	PF00909	Ammonium Transporter Family
AL539_11960	PF02146	Sir2 family
AL539_11965	PF13416	Bacterial extracellular solute-binding protein
AL539_11970	PF13416	Bacterial extracellular solute-binding protein
AL539_11975	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_11980	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_11985	PF00005	ABC transporter
AL539_11985	PF08402	TOBE domain
AL539_11995	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL539_12000	PF11205	AL539_12000
AL539_12005	PF01171	PP-loop family
AL539_12010	PF00582	Universal stress protein family
AL539_12015	PF00027	Cyclic nucleotide-binding domain
AL539_12015	PF13545	Crp-like helix-turn-helix domain
AL539_12020	PF13386	AL539_12020
AL539_12025	PF03597	AL539_12025
AL539_12030	PF00122	E1-E2 ATPase
AL539_12030	PF00403	Heavy-metal-associated domain
AL539_12030	PF00702	haloacid dehalogenase-like hydrolase
AL539_12030	PF12156	AL539_12030
AL539_12035	PF05751	AL539_12035
AL539_12040	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL539_12040	PF14715	N-terminal domain of cytochrome oxidase-cbb3, FixP
AL539_12045	PF05545	AL539_12045
AL539_12050	PF02433	Cytochrome C oxidase, mono-heme subunit/FixO
AL539_12055	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL539_12065	PF08495	AL539_12065
AL539_12065	PF10442	AL539_12065
AL539_12070	PF00072	Response regulator receiver domain
AL539_12070	PF00512	His Kinase A (phospho-acceptor) domain
AL539_12070	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_12075	PF14412	AL539_12075
AL539_12095	PF12321	AL539_12095
AL539_12100	PF06303	Organiser of macrodomain of Terminus of chromosome
AL539_12100	PF17414	AL539_12100
AL539_12105	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL539_12105	PF13654	AAA domain
AL539_12110	PF07977	FabA-like domain
AL539_12115	PF04957	Ribosome modulation factor
AL539_12120	PF11949	AL539_12120
AL539_12125	PF00005	ABC transporter
AL539_12125	PF12848	ABC transporter
AL539_12125	PF16326	AL539_12125
AL539_12130	PF05768	Glutaredoxin-like domain (DUF836)
AL539_12135	PF01170	Putative RNA methylase family UPF0020
AL539_12135	PF02926	THUMP domain
AL539_12135	PF10672	S-adenosylmethionine-dependent methyltransferase
AL539_12140	PF07126	AL539_12140
AL539_12145	PF01180	Dihydroorotate dehydrogenase
AL539_12150	PF05088	AL539_12150
AL539_12155	PF11197	AL539_12155
AL539_12160	PF01433	Peptidase family M1
AL539_12160	PF11940	Domain of unknown function (DUF3458)
AL539_12160	PF17432	AL539_12160
AL539_12170	PF00595	PDZ domain (Also known as DHR or GLGF)
AL539_12170	PF03572	Peptidase family S41
AL539_12170	PF08180	AL539_12170
AL539_12170	PF11818	AL539_12170
AL539_12175	PF04352	ProQ/FINO family
AL539_12175	PF17516	AL539_12175
AL539_12180	PF13185	GAF domain
AL539_12185	PF00005	ABC transporter
AL539_12185	PF00664	ABC transporter transmembrane region
AL539_12190	PF04403	AL539_12190
AL539_12195	PF02470	AL539_12195
AL539_12200	PF01189	NOL1/NOP2/sun family
AL539_12200	PF13636	pre-rRNA processing and ribosome biogenesis
AL539_12200	PF17125	AL539_12200
AL539_12205	PF13509	S1 domain
AL539_12215	PF14539	Domain of unknown function (DUF4442)
AL539_12220	PF00793	DAHP synthetase I family
AL539_12225	PF04461	Protein of unknown function (DUF520)
AL539_12230	PF10414	Sirohaem synthase dimerisation region
AL539_12230	PF13241	Putative NAD(P)-binding
AL539_12230	PF14824	Sirohaem biosynthesis protein central
AL539_12240	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_12245	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_12250	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_12255	PF00005	ABC transporter
AL539_12260	PF01027	Inhibitor of apoptosis-promoting Bax1
AL539_12270	PF04358	DsrC like protein
AL539_12275	PF00708	Acylphosphatase
AL539_12280	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_12285	PF10672	S-adenosylmethionine-dependent methyltransferase
AL539_12295	PF02321	Outer membrane efflux protein
AL539_12300	PF00691	OmpA family
AL539_12325	PF02321	Outer membrane efflux protein
AL539_12330	PF00691	OmpA family
AL539_12335	PF11042	AL539_12335
AL539_12340	PF00990	GGDEF domain
AL539_12340	PF13424	Tetratricopeptide repeat
AL539_12345	PF01614	Bacterial transcriptional regulator
AL539_12345	PF09339	IclR helix-turn-helix domain
AL539_12350	PF00106	short chain dehydrogenase
AL539_12355	PF00248	Aldo/keto reductase family
AL539_12360	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_12360	PF03466	LysR substrate binding domain
AL539_12365	PF00296	Luciferase-like monooxygenase
AL539_12370	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_12370	PF03466	LysR substrate binding domain
AL539_12375	PF07690	Major Facilitator Superfamily
AL539_12380	PF00440	Bacterial regulatory proteins, tetR family
AL539_12385	PF00107	Zinc-binding dehydrogenase
AL539_12385	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_12390	PF01965	DJ-1/PfpI family
AL539_12390	PF12833	Helix-turn-helix domain
AL539_12395	PF00857	Isochorismatase family
AL539_12400	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_12405	PF03773	AL539_12405
AL539_12410	PF00107	Zinc-binding dehydrogenase
AL539_12410	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_12415	PF02574	Homocysteine S-methyltransferase
AL539_12420	PF00005	ABC transporter
AL539_12425	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_12430	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_12435	PF11777	AL539_12435
AL539_12440	PF13609	Gram-negative porin
AL539_12445	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_12445	PF03466	LysR substrate binding domain
AL539_12450	PF16576	AL539_12450
AL539_12455	PF00873	AcrB/AcrD/AcrF family
AL539_12460	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_12460	PF03466	LysR substrate binding domain
AL539_12470	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_12470	PF03466	LysR substrate binding domain
AL539_12475	PF01810	AL539_12475
AL539_12480	PF12844	Helix-turn-helix domain
AL539_12485	PF06508	Queuosine biosynthesis protein QueC
AL539_12490	PF13394	4Fe-4S single cluster domain
AL539_12495	PF08282	haloacid dehalogenase-like hydrolase
AL539_12500	PF00293	NUDIX domain
AL539_12505	PF00089	Trypsin
AL539_12505	PF02839	Carbohydrate binding domain
AL539_12510	PF00583	Acetyltransferase (GNAT) family
AL539_12515	PF00501	AMP-binding enzyme
AL539_12515	PF13193	AMP-binding enzyme C-terminal domain
AL539_12515	PF16177	AL539_12515
AL539_12520	PF04303	PrpF protein
AL539_12525	PF00330	Aconitase family (aconitate hydratase)
AL539_12525	PF00694	Aconitase C-terminal domain
AL539_12530	PF00285	Citrate synthase
AL539_12535	PF13714	Phosphoenolpyruvate phosphomutase
AL539_12540	PF00392	Bacterial regulatory proteins, gntR family
AL539_12540	PF07729	FCD domain
AL539_12545	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_12550	PF03401	Tripartite tricarboxylate transporter family receptor
AL539_12555	PF07331	AL539_12555
AL539_12560	PF01970	AL539_12560
AL539_12570	PF01925	AL539_12570
AL539_12575	PF16868	AL539_12575
AL539_12585	PF05844	YopD protein
AL539_12590	PF04888	AL539_12590
AL539_12595	PF07720	Tetratricopeptide repeat
AL539_12600	PF04792	V antigen (LcrV) protein
AL539_12605	PF07216	AL539_12605
AL539_12610	PF09621	AL539_12610
AL539_12615	PF00771	FHIPEP family
AL539_12620	PF14559	Tetratricopeptide repeat
AL539_12625	PF09474	AL539_12625
AL539_12635	PF09059	TyeA
AL539_12640	PF07201	HrpJ-like domain
AL539_12645	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_12645	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL539_12650	PF07321	Type III secretion protein YscO
AL539_12660	PF01052	Surface presentation of antigens (SPOA)
AL539_12665	PF00813	AL539_12665
AL539_12670	PF01313	AL539_12670
AL539_12675	PF01311	AL539_12675
AL539_12680	PF01312	FlhB HrpN YscU SpaS Family
AL539_12685	PF12833	Helix-turn-helix domain
AL539_12690	PF00892	EamA-like transporter family
AL539_12700	PF05932	Tir chaperone protein (CesT) family
AL539_12710	PF05932	Tir chaperone protein (CesT) family
AL539_12715	PF02661	Fic/DOC family
AL539_12720	PF05932	Tir chaperone protein (CesT) family
AL539_12725	PF02108	AL539_12725
AL539_12730	PF06578	AL539_12730
AL539_12735	PF01514	Secretory protein of YscJ/FliF family
AL539_12740	PF17001	AL539_12740
AL539_12745	PF09025	YopR Core
AL539_12750	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
AL539_12755	PF09392	Type III secretion needle MxiH like
AL539_12760	PF08988	Protein of unknown function (DUF1895)
AL539_12765	PF16693	AL539_12765
AL539_12765	PF16697	AL539_12765
AL539_12770	PF00263	AL539_12770
AL539_12770	PF03958	Bacterial type II/III secretion system short domain
AL539_12775	PF05932	Tir chaperone protein (CesT) family
AL539_12780	PF16806	AL539_12780
AL539_12785	PF12833	Helix-turn-helix domain
AL539_12790	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AL539_12795	PF05932	Tir chaperone protein (CesT) family
AL539_12805	PF00171	Aldehyde dehydrogenase family
AL539_12810	PF00158	Sigma-54 interaction domain
AL539_12810	PF01590	GAF domain
AL539_12810	PF02954	Bacterial regulatory protein, Fis family
AL539_12825	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
AL539_12825	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL539_12830	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL539_12835	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
AL539_12835	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
AL539_12840	PF12833	Helix-turn-helix domain
AL539_12840	PF14526	Integron-associated effector binding protein
AL539_12845	PF00593	TonB dependent receptor
AL539_12845	PF07715	TonB-dependent Receptor Plug Domain
AL539_12850	PF00072	Response regulator receiver domain
AL539_12850	PF08279	HTH domain
AL539_12850	PF12431	AL539_12850
AL539_12855	PF00989	PAS fold
AL539_12855	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_12855	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AL539_12855	PF17203	AL539_12855
AL539_12865	PF02321	Outer membrane efflux protein
AL539_12870	PF13437	HlyD family secretion protein
AL539_12870	PF13533	Biotin-lipoyl like
AL539_12875	PF12698	ABC-2 family transporter protein
AL539_12880	PF12698	ABC-2 family transporter protein
AL539_12885	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_12885	PF03466	LysR substrate binding domain
AL539_12895	PF01734	Patatin-like phospholipase
AL539_12900	PF08543	Phosphomethylpyrimidine kinase
AL539_12905	PF00155	Aminotransferase class I and II
AL539_12910	PF02080	TrkA-C domain
AL539_12910	PF06826	AL539_12910
AL539_12915	PF07869	AL539_12915
AL539_12920	PF16576	AL539_12920
AL539_12925	PF04632	AL539_12925
AL539_12940	PF13091	PLD-like domain
AL539_12950	PF11008	AL539_12950
AL539_12955	PF01810	AL539_12955
AL539_12960	PF01810	AL539_12960
AL539_12965	PF07237	Protein of unknown function (DUF1428)
AL539_12975	PF03992	Antibiotic biosynthesis monooxygenase
AL539_12980	PF03992	Antibiotic biosynthesis monooxygenase
AL539_12985	PF01411	tRNA synthetases class II (A)
AL539_12985	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL539_12990	PF13302	Acetyltransferase (GNAT) domain
AL539_12995	PF12464	Maltose acetyltransferase
AL539_12995	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_13000	PF06271	AL539_13000
AL539_13005	PF01243	Pyridoxamine 5'-phosphate oxidase
AL539_13010	PF09413	Domain of unknown function (DUF2007)
AL539_13020	PF16695	AL539_13020
AL539_13025	PF13527	Acetyltransferase (GNAT) domain
AL539_13030	PF05016	Plasmid stabilisation system protein
AL539_13045	PF11665	AL539_13045
AL539_13055	PF04634	Protein of unknown function, DUF600
AL539_13060	PF11665	AL539_13060
AL539_13070	PF11665	AL539_13070
AL539_13080	PF11665	AL539_13080
AL539_13105	PF03831	PhnA protein
AL539_13105	PF08274	PhnA Zinc-Ribbon
AL539_13115	PF11665	AL539_13115
AL539_13135	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL539_13155	PF11665	AL539_13155
AL539_13175	PF11665	AL539_13175
AL539_13195	PF13333	AL539_13195
AL539_13200	PF00665	Integrase core domain
AL539_13200	PF13276	AL539_13200
AL539_13205	PF01527	Transposase
AL539_13210	PF11665	AL539_13210
AL539_13215	PF00293	NUDIX domain
AL539_13240	PF13957	AL539_13240
AL539_13260	PF11665	AL539_13260
AL539_13285	PF11665	AL539_13285
AL539_13290	PF01965	DJ-1/PfpI family
AL539_13295	PF13847	Methyltransferase domain
AL539_13315	PF07653	Variant SH3 domain
AL539_13325	PF10387	Protein of unknown function (DUF2442)
AL539_13330	PF13711	AL539_13330
AL539_13335	PF11665	AL539_13335
AL539_13345	PF11665	AL539_13345
AL539_13350	PF11964	SpoIIAA-like
AL539_13365	PF01636	Phosphotransferase enzyme family
AL539_13380	PF11665	AL539_13380
AL539_13385	PF04221	RelB antitoxin
AL539_13390	PF05016	Plasmid stabilisation system protein
AL539_13395	PF06042	Bacterial protein of unknown function (DUF925)
AL539_13400	PF11665	AL539_13400
AL539_13415	PF11665	AL539_13415
AL539_13420	PF06189	AL539_13420
AL539_13445	PF11665	AL539_13445
AL539_13450	PF11665	AL539_13450
AL539_13465	PF11665	AL539_13465
AL539_13485	PF13737	AL539_13485
AL539_13495	PF11665	AL539_13495
AL539_13500	PF11665	AL539_13500
AL539_13510	PF11665	AL539_13510
AL539_13530	PF11665	AL539_13530
AL539_13550	PF11665	AL539_13550
AL539_13560	PF11665	AL539_13560
AL539_13570	PF11665	AL539_13570
AL539_13580	PF11665	AL539_13580
AL539_13600	PF11665	AL539_13600
AL539_13610	PF11665	AL539_13610
AL539_13625	PF11948	AL539_13625
AL539_13630	PF11665	AL539_13630
AL539_13640	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL539_13645	PF05016	Plasmid stabilisation system protein
AL539_13665	PF13302	Acetyltransferase (GNAT) domain
AL539_13680	PF05016	Plasmid stabilisation system protein
AL539_13685	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL539_13690	PF05016	Plasmid stabilisation system protein
AL539_13695	PF11665	AL539_13695
AL539_13705	PF13508	Acetyltransferase (GNAT) domain
AL539_13715	PF11665	AL539_13715
AL539_13730	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL539_13735	PF11665	AL539_13735
AL539_13745	PF11665	AL539_13745
AL539_13760	PF11665	AL539_13760
AL539_13770	PF04607	Region found in RelA / SpoT proteins
AL539_13775	PF00589	Phage integrase family
AL539_13775	PF13495	Phage integrase, N-terminal SAM-like domain
AL539_13780	PF11163	AL539_13780
AL539_13785	PF13023	HD domain
AL539_13790	PF13302	Acetyltransferase (GNAT) domain
AL539_13795	PF00158	Sigma-54 interaction domain
AL539_13795	PF00989	PAS fold
AL539_13800	PF05128	AL539_13800
AL539_13805	PF04317	AL539_13805
AL539_13815	PF05681	AL539_13815
AL539_13815	PF05683	Fumarase C-terminus
AL539_13825	PF00425	chorismate binding enzyme
AL539_13825	PF04715	Anthranilate synthase component I, N terminal region
AL539_13830	PF00072	Response regulator receiver domain
AL539_13830	PF00512	His Kinase A (phospho-acceptor) domain
AL539_13830	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_13835	PF07700	Heme NO binding
AL539_13840	PF00293	NUDIX domain
AL539_13845	PF03222	Tryptophan/tyrosine permease family
AL539_13850	PF03313	AL539_13850
AL539_13850	PF03315	Serine dehydratase beta chain
AL539_13855	PF00563	EAL domain
AL539_13860	PF00583	Acetyltransferase (GNAT) family
AL539_13865	PF01242	6-pyruvoyl tetrahydropterin synthase
AL539_13870	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_13875	PF00152	tRNA synthetases class II (D, K and N)
AL539_13875	PF01336	OB-fold nucleic acid binding domain
AL539_13885	PF00155	Aminotransferase class I and II
AL539_13885	PF00392	Bacterial regulatory proteins, gntR family
AL539_13900	PF00155	Aminotransferase class I and II
AL539_13905	PF13505	Outer membrane protein beta-barrel domain
AL539_13910	PF00027	Cyclic nucleotide-binding domain
AL539_13910	PF00571	CBS domain
AL539_13910	PF03445	AL539_13910
AL539_13910	PF10335	AL539_13910
AL539_13915	PF00929	Exonuclease
AL539_13920	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_13920	PF00672	HAMP domain
AL539_13920	PF02743	Cache domain
AL539_13925	PF02028	BCCT family transporter
AL539_13930	PF01047	MarR family
AL539_13935	PF00072	Response regulator receiver domain
AL539_13935	PF00196	Bacterial regulatory proteins, luxR family
AL539_13940	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_13940	PF07730	Histidine kinase
AL539_13940	PF17200	AL539_13940
AL539_13945	PF06808	AL539_13945
AL539_13950	PF04290	AL539_13950
AL539_13955	PF03480	Bacterial extracellular solute-binding protein, family 7
AL539_13965	PF11201	AL539_13965
AL539_13970	PF00753	Metallo-beta-lactamase superfamily
AL539_13975	PF05951	AL539_13975
AL539_13980	PF01471	Putative peptidoglycan binding domain
AL539_13980	PF03734	L,D-transpeptidase catalytic domain
AL539_13985	PF07433	AL539_13985
AL539_13990	PF09375	Imelysin
AL539_13995	PF06537	AL539_13995
AL539_14000	PF09375	Imelysin
AL539_14005	PF00925	GTP cyclohydrolase II
AL539_14015	PF03918	Cytochrome C biogenesis protein
AL539_14020	PF08534	Redoxin
AL539_14025	PF01578	AL539_14025
AL539_14025	PF16327	AL539_14025
AL539_14030	PF03916	AL539_14030
AL539_14035	PF12800	4Fe-4S binding domain
AL539_14035	PF13247	4Fe-4S dicluster domain
AL539_14040	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
AL539_14045	PF02335	Cytochrome c552
AL539_14055	PF07719	Tetratricopeptide repeat
AL539_14060	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL539_14060	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL539_14065	PF13489	Methyltransferase domain
AL539_14075	PF00317	Ribonucleotide reductase, all-alpha domain
AL539_14075	PF02867	Ribonucleotide reductase, barrel domain
AL539_14075	PF03477	ATP cone domain
AL539_14080	PF00268	Ribonucleotide reductase, small chain
AL539_14085	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_14090	PF00994	Probable molybdopterin binding domain
AL539_14095	PF13084	AL539_14095
AL539_14100	PF13740	ACT domain
AL539_14105	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL539_14110	PF03435	Saccharopine dehydrogenase
AL539_14110	PF16653	AL539_14110
AL539_14115	PF00202	Aminotransferase class-III
AL539_14115	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL539_14140	PF01066	CDP-alcohol phosphatidyltransferase
AL539_14145	PF01541	GIY-YIG catalytic domain
AL539_14145	PF02151	UvrB/uvrC motif
AL539_14145	PF08459	UvrC Helix-hairpin-helix N-terminal
AL539_14145	PF14520	Helix-hairpin-helix domain
AL539_14150	PF00072	Response regulator receiver domain
AL539_14150	PF00196	Bacterial regulatory proteins, luxR family
AL539_14155	PF00136	DNA polymerase family B
AL539_14155	PF03104	DNA polymerase family B, exonuclease domain
AL539_14165	PF01132	Elongation factor P (EF-P) OB domain
AL539_14165	PF08207	Elongation factor P (EF-P) KOW-like domain
AL539_14165	PF09285	Elongation factor P, C-terminal
AL539_14170	PF04269	Protein of unknown function, DUF440
AL539_14175	PF00849	RNA pseudouridylate synthase
AL539_14175	PF01479	S4 domain
AL539_14180	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
AL539_14185	PF01300	Telomere recombination
AL539_14190	PF02811	PHP domain
AL539_14195	PF08056	AL539_14195
AL539_14200	PF00425	chorismate binding enzyme
AL539_14200	PF04715	Anthranilate synthase component I, N terminal region
AL539_14205	PF00117	Glutamine amidotransferase class-I
AL539_14210	PF00591	Glycosyl transferase family, a/b domain
AL539_14210	PF02885	Glycosyl transferase family, helical bundle domain
AL539_14215	PF00218	Indole-3-glycerol phosphate synthase
AL539_14215	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
AL539_14220	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_14225	PF00290	Tryptophan synthase alpha chain
AL539_14230	PF00027	Cyclic nucleotide-binding domain
AL539_14230	PF13545	Crp-like helix-turn-helix domain
AL539_14235	PF00501	AMP-binding enzyme
AL539_14235	PF13193	AMP-binding enzyme C-terminal domain
AL539_14245	PF00375	Sodium:dicarboxylate symporter family
AL539_14250	PF17327	AL539_14250
AL539_14255	PF00072	Response regulator receiver domain
AL539_14255	PF00512	His Kinase A (phospho-acceptor) domain
AL539_14255	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_14265	PF04279	AL539_14265
AL539_14270	PF03061	Thioesterase superfamily
AL539_14275	PF03795	YCII-related domain
AL539_14280	PF16549	AL539_14280
AL539_14285	PF01717	Cobalamin-independent synthase, Catalytic domain
AL539_14285	PF08267	Cobalamin-independent synthase, N-terminal domain
AL539_14290	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_14290	PF03466	LysR substrate binding domain
AL539_14295	PF14056	AL539_14295
AL539_14305	PF00563	EAL domain
AL539_14305	PF00571	CBS domain
AL539_14305	PF00989	PAS fold
AL539_14310	PF04055	Radical SAM superfamily
AL539_14310	PF08497	AL539_14310
AL539_14310	PF11842	AL539_14310
AL539_14330	PF04138	AL539_14330
AL539_14335	PF02366	AL539_14335
AL539_14340	PF00535	Glycosyl transferase family 2
AL539_14345	PF00072	Response regulator receiver domain
AL539_14345	PF00486	Transcriptional regulatory protein, C terminal
AL539_14350	PF00512	His Kinase A (phospho-acceptor) domain
AL539_14350	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_14360	PF00857	Isochorismatase family
AL539_14365	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_14365	PF03466	LysR substrate binding domain
AL539_14370	PF13437	HlyD family secretion protein
AL539_14370	PF13533	Biotin-lipoyl like
AL539_14375	PF11168	AL539_14375
AL539_14375	PF13515	AL539_14375
AL539_14380	PF01717	Cobalamin-independent synthase, Catalytic domain
AL539_14385	PF08908	AL539_14385
AL539_14390	PF07968	Leukocidin/Hemolysin toxin family
AL539_14400	PF00005	ABC transporter
AL539_14405	PF02687	AL539_14405
AL539_14405	PF12704	MacB-like periplasmic core domain
AL539_14410	PF02687	AL539_14410
AL539_14410	PF12704	MacB-like periplasmic core domain
AL539_14415	PF02321	Outer membrane efflux protein
AL539_14420	PF16576	AL539_14420
AL539_14430	PF05257	CHAP domain
AL539_14440	PF00085	Thioredoxin
AL539_14445	PF02683	AL539_14445
AL539_14445	PF11412	Disulphide bond corrector protein DsbC
AL539_14445	PF13899	Thioredoxin-like
AL539_14455	PF00072	Response regulator receiver domain
AL539_14455	PF00196	Bacterial regulatory proteins, luxR family
AL539_14460	PF00512	His Kinase A (phospho-acceptor) domain
AL539_14460	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_14460	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AL539_14465	PF13247	4Fe-4S dicluster domain
AL539_14470	PF03916	AL539_14470
AL539_14475	PF00384	Molybdopterin oxidoreductase
AL539_14475	PF01568	Molydopterin dinucleotide binding domain
AL539_14480	PF00034	Cytochrome c
AL539_14485	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL539_14490	PF04403	AL539_14490
AL539_14495	PF02470	AL539_14495
AL539_14500	PF03886	Protein of unknown function (DUF330)
AL539_14515	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_14520	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL539_14525	PF13176	Tetratricopeptide repeat
AL539_14525	PF14559	Tetratricopeptide repeat
AL539_14530	PF06305	AL539_14530
AL539_14535	PF00216	Bacterial DNA-binding protein
AL539_14540	PF00575	S1 RNA binding domain
AL539_14545	PF02224	Cytidylate kinase
AL539_14550	PF01343	Peptidase family S49
AL539_14550	PF08496	AL539_14550
AL539_14555	PF00106	short chain dehydrogenase
AL539_14560	PF00154	recA bacterial DNA recombination protein
AL539_14565	PF00817	impB/mucB/samB family
AL539_14570	PF01336	OB-fold nucleic acid binding domain
AL539_14570	PF02811	PHP domain
AL539_14570	PF07733	Bacterial DNA polymerase III alpha subunit
AL539_14570	PF14579	Helix-hairpin-helix motif
AL539_14575	PF00072	Response regulator receiver domain
AL539_14575	PF01584	CheW-like domain
AL539_14580	PF00480	ROK family
AL539_14585	PF00224	Pyruvate kinase, barrel domain
AL539_14585	PF02887	Pyruvate kinase, alpha/beta domain
AL539_14590	PF01734	Patatin-like phospholipase
AL539_14600	PF13505	Outer membrane protein beta-barrel domain
AL539_14605	PF00209	Sodium:neurotransmitter symporter family
AL539_14615	PF00367	phosphotransferase system, EIIB
AL539_14615	PF02378	Phosphotransferase system, EIIC
AL539_14620	PF01026	TatD related DNase
AL539_14625	PF09115	DNA polymerase III, delta subunit, C terminal
AL539_14625	PF13177	DNA polymerase III, delta subunit
AL539_14630	PF02223	Thymidylate kinase
AL539_14635	PF02618	YceG-like family
AL539_14640	PF01063	Aminotransferase class IV
AL539_14645	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL539_14645	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL539_14650	PF00550	Phosphopantetheine attachment site
AL539_14655	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_14660	PF00698	Acyl transferase domain
AL539_14665	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL539_14665	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL539_14670	PF02504	Fatty acid synthesis protein
AL539_14675	PF01783	Ribosomal L32p protein family
AL539_14680	PF02620	AL539_14680
AL539_14685	PF02545	Maf-like protein
AL539_14690	PF00849	RNA pseudouridylate synthase
AL539_14690	PF01479	S4 domain
AL539_14700	PF00575	S1 RNA binding domain
AL539_14700	PF10150	Ribonuclease E/G family
AL539_14710	PF00916	AL539_14710
AL539_14710	PF01740	STAS domain
AL539_14715	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL539_14720	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
AL539_14720	PF12557	Cob(I)alamin adenosyltransferase N terminal
AL539_14725	PF05170	AL539_14725
AL539_14730	PF00485	Phosphoribulokinase / Uridine kinase family
AL539_14735	PF10609	ParA/MinD ATPase like
AL539_14740	PF01588	Putative tRNA binding domain
AL539_14740	PF09334	tRNA synthetases class I (M)
AL539_14765	PF00392	Bacterial regulatory proteins, gntR family
AL539_14765	PF07840	FadR C-terminal domain
AL539_14770	PF06450	AL539_14770
AL539_14775	PF02600	Disulfide bond formation protein DsbB
AL539_14780	PF02810	SEC-C motif
AL539_14780	PF03695	Uncharacterised protein family (UPF0149)
AL539_14785	PF01207	Dihydrouridine synthase (Dus)
AL539_14790	PF00990	GGDEF domain
AL539_14795	PF00128	Alpha amylase, catalytic domain
AL539_14795	PF02903	Alpha amylase, N-terminal ig-like domain
AL539_14800	PF00005	ABC transporter
AL539_14805	PF02653	AL539_14805
AL539_14810	PF04392	ABC transporter substrate binding protein
AL539_14815	PF04217	AL539_14815
AL539_14820	PF00871	Acetokinase family
AL539_14825	PF01515	Phosphate acetyl/butaryl transferase
AL539_14825	PF07085	DRTGG domain
AL539_14825	PF13500	AAA domain
AL539_14835	PF13409	Glutathione S-transferase, N-terminal domain
AL539_14835	PF13410	Glutathione S-transferase, C-terminal domain
AL539_14840	PF00005	ABC transporter
AL539_14840	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_14845	PF00005	ABC transporter
AL539_14845	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_14850	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_14850	PF12911	AL539_14850
AL539_14855	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_14860	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_14870	PF02391	MoaE protein
AL539_14875	PF02597	ThiS family
AL539_14880	PF01967	MoaC family
AL539_14885	PF00994	Probable molybdopterin binding domain
AL539_14890	PF04055	Radical SAM superfamily
AL539_14890	PF06463	Molybdenum Cofactor Synthesis C
AL539_14890	PF13353	4Fe-4S single cluster domain
AL539_14895	PF01933	Uncharacterised protein family UPF0052
AL539_14900	PF01627	Hpt domain
AL539_14905	PF00072	Response regulator receiver domain
AL539_14905	PF00158	Sigma-54 interaction domain
AL539_14905	PF02954	Bacterial regulatory protein, Fis family
AL539_14910	PF00271	Helicase conserved C-terminal domain
AL539_14910	PF02151	UvrB/uvrC motif
AL539_14910	PF04851	Type III restriction enzyme, res subunit
AL539_14910	PF12344	Ultra-violet resistance protein B
AL539_14920	PF01228	Glycine radical
AL539_14920	PF02901	Pyruvate formate lyase
AL539_14925	PF02508	AL539_14925
AL539_14930	PF04060	Putative Fe-S cluster
AL539_14930	PF14697	4Fe-4S dicluster domain
AL539_14935	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AL539_14935	PF10531	SLBB domain
AL539_14935	PF12838	4Fe-4S dicluster domain
AL539_14935	PF13375	RnfC Barrel sandwich hybrid domain
AL539_14940	PF03116	AL539_14940
AL539_14945	PF04205	FMN-binding domain
AL539_14950	PF02508	AL539_14950
AL539_14955	PF00633	Helix-hairpin-helix motif
AL539_14955	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL539_14955	PF10576	Iron-sulfur binding domain of endonuclease III
AL539_14960	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_14965	PF10952	AL539_14965
AL539_14970	PF00691	OmpA family
AL539_14980	PF00929	Exonuclease
AL539_14985	PF03553	AL539_14985
AL539_14985	PF13726	AL539_14985
AL539_14990	PF13743	Thioredoxin
AL539_15005	PF00462	Glutaredoxin
AL539_15010	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL539_15010	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL539_15015	PF11993	AL539_15015
AL539_15020	PF00106	short chain dehydrogenase
AL539_15025	PF00171	Aldehyde dehydrogenase family
AL539_15025	PF00465	Iron-containing alcohol dehydrogenase
AL539_15030	PF01914	AL539_15030
AL539_15035	PF00520	Ion transport protein
AL539_15040	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL539_15040	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL539_15045	PF03553	AL539_15045
AL539_15055	PF01627	Hpt domain
AL539_15060	PF04245	AL539_15060
AL539_15065	PF07208	Protein of unknown function (DUF1414)
AL539_15070	PF00884	Sulfatase
AL539_15070	PF11893	AL539_15070
AL539_15080	PF00850	Histone deacetylase domain
AL539_15085	PF00106	short chain dehydrogenase
AL539_15095	PF01131	DNA topoisomerase
AL539_15095	PF01751	Toprim domain
AL539_15100	PF00881	Nitroreductase family
AL539_15105	PF07690	Major Facilitator Superfamily
AL539_15110	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_15110	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_15115	PF01343	Peptidase family S49
AL539_15120	PF00710	Asparaginase
AL539_15125	PF07023	AL539_15125
AL539_15130	PF11207	AL539_15130
AL539_15135	PF01641	SelR domain
AL539_15140	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL539_15140	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL539_15145	PF01263	Aldose 1-epimerase
AL539_15150	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_15150	PF17201	AL539_15150
AL539_15155	PF13847	Methyltransferase domain
AL539_15160	PF04187	Protein of unknown function, DUF399
AL539_15175	PF00245	Alkaline phosphatase
AL539_15180	PF13467	Ribbon-helix-helix domain
AL539_15185	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_15190	PF03992	Antibiotic biosynthesis monooxygenase
AL539_15195	PF00924	Mechanosensitive ion channel
AL539_15200	PF03692	AL539_15200
AL539_15205	PF04226	AL539_15205
AL539_15210	PF03692	AL539_15210
AL539_15215	PF00230	Major intrinsic protein
AL539_15220	PF02132	RecR protein
AL539_15220	PF13662	Toprim domain
AL539_15225	PF02575	YbaB/EbfC DNA-binding family
AL539_15230	PF12168	AL539_15230
AL539_15230	PF12169	DNA polymerase III subunits gamma and tau domain III
AL539_15230	PF12170	DNA polymerase III tau subunit V interacting with alpha
AL539_15230	PF13177	DNA polymerase III, delta subunit
AL539_15235	PF00156	Phosphoribosyl transferase domain
AL539_15240	PF04304	AL539_15240
AL539_15250	PF00072	Response regulator receiver domain
AL539_15255	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_15255	PF03466	LysR substrate binding domain
AL539_15260	PF00156	Phosphoribosyl transferase domain
AL539_15260	PF13522	Glutamine amidotransferase domain
AL539_15265	PF02674	AL539_15265
AL539_15270	PF05036	Sporulation related domain
AL539_15275	PF08245	Mur ligase middle domain
AL539_15280	PF01039	Carboxyl transferase domain
AL539_15290	PF01416	tRNA pseudouridine synthase
AL539_15300	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL539_15300	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL539_15305	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL539_15305	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_15305	PF11890	Domain of unknown function (DUF3410)
AL539_15315	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL539_15315	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL539_15320	PF01266	FAD dependent oxidoreductase
AL539_15320	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
AL539_15325	PF03358	NADPH-dependent FMN reductase
AL539_15335	PF08891	AL539_15335
AL539_15340	PF04315	AL539_15340
AL539_15350	PF03458	AL539_15350
AL539_15355	PF01264	Chorismate synthase
AL539_15360	PF05175	Methyltransferase small domain
AL539_15365	PF01713	Smr domain
AL539_15370	PF00300	Histidine phosphatase superfamily (branch 1)
AL539_15375	PF00675	Insulinase (Peptidase family M16)
AL539_15375	PF05193	Peptidase M16 inactive domain
AL539_15375	PF16187	AL539_15375
AL539_15385	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_15385	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AL539_15385	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AL539_15390	PF00108	Thiolase, N-terminal domain
AL539_15390	PF02803	Thiolase, C-terminal domain
AL539_15400	PF04542	Sigma-70 region 2
AL539_15400	PF08281	Sigma-70, region 4
AL539_15405	PF11859	AL539_15405
AL539_15410	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_15415	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_15420	PF00589	Phage integrase family
AL539_15440	PF06496	AL539_15440
AL539_15445	PF09370	TIM-barrel signal transduction protein
AL539_15450	PF06792	Uncharacterised protein family (UPF0261)
AL539_15455	PF00440	Bacterial regulatory proteins, tetR family
AL539_15460	PF04333	AL539_15460
AL539_15465	PF14559	Tetratricopeptide repeat
AL539_15470	PF03918	Cytochrome C biogenesis protein
AL539_15475	PF08534	Redoxin
AL539_15480	PF01578	AL539_15480
AL539_15480	PF16327	AL539_15480
AL539_15485	PF03100	CcmE
AL539_15490	PF04995	AL539_15490
AL539_15495	PF01578	AL539_15495
AL539_15500	PF03379	AL539_15500
AL539_15505	PF00005	ABC transporter
AL539_15510	PF10975	AL539_15510
AL539_15515	PF01584	CheW-like domain
AL539_15520	PF01584	CheW-like domain
AL539_15525	PF13614	AAA domain
AL539_15530	PF00072	Response regulator receiver domain
AL539_15530	PF01339	CheB methylesterase
AL539_15535	PF01584	CheW-like domain
AL539_15535	PF01627	Hpt domain
AL539_15535	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_15535	PF02895	Signal transducing histidine kinase, homodimeric domain
AL539_15540	PF04344	Chemotaxis phosphatase, CheZ
AL539_15545	PF00072	Response regulator receiver domain
AL539_15550	PF04539	Sigma-70 region 3
AL539_15550	PF04542	Sigma-70 region 2
AL539_15550	PF04545	Sigma-70, region 4
AL539_15555	PF10609	ParA/MinD ATPase like
AL539_15560	PF00448	SRP54-type protein, GTPase domain
AL539_15565	PF00771	FHIPEP family
AL539_15570	PF01312	FlhB HrpN YscU SpaS Family
AL539_15575	PF01311	AL539_15575
AL539_15580	PF01313	AL539_15580
AL539_15585	PF00813	AL539_15585
AL539_15590	PF04347	AL539_15590
AL539_15595	PF01052	Surface presentation of antigens (SPOA)
AL539_15600	PF01052	Surface presentation of antigens (SPOA)
AL539_15600	PF02154	Flagellar motor switch protein FliM
AL539_15605	PF03748	AL539_15605
AL539_15610	PF02120	Flagellar hook-length control protein FliK
AL539_15615	PF07978	NIPSNAP
AL539_15620	PF02050	Flagellar FliJ protein
AL539_15625	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_15630	PF02108	AL539_15630
AL539_15635	PF01706	FliG C-terminal domain
AL539_15635	PF14841	FliG middle domain
AL539_15635	PF14842	FliG N-terminal domain
AL539_15640	PF01514	Secretory protein of YscJ/FliF family
AL539_15640	PF08345	AL539_15640
AL539_15645	PF02049	AL539_15645
AL539_15650	PF00072	Response regulator receiver domain
AL539_15650	PF00158	Sigma-54 interaction domain
AL539_15650	PF02954	Bacterial regulatory protein, Fis family
AL539_15655	PF00512	His Kinase A (phospho-acceptor) domain
AL539_15655	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_15655	PF13188	PAS domain
AL539_15660	PF00158	Sigma-54 interaction domain
AL539_15660	PF02954	Bacterial regulatory protein, Fis family
AL539_15660	PF06490	AL539_15660
AL539_15665	PF02561	Flagellar protein FliS
AL539_15675	PF02465	AL539_15675
AL539_15675	PF07195	AL539_15675
AL539_15675	PF07196	Flagellin hook IN motif
AL539_15680	PF03646	FlaG protein
AL539_15685	PF00669	Bacterial flagellin N-terminal helical region
AL539_15685	PF00700	Bacterial flagellin C-terminal helical region
AL539_15685	PF07196	Flagellin hook IN motif
AL539_15690	PF00669	Bacterial flagellin N-terminal helical region
AL539_15690	PF00700	Bacterial flagellin C-terminal helical region
AL539_15690	PF07196	Flagellin hook IN motif
AL539_15700	PF00669	Bacterial flagellin N-terminal helical region
AL539_15700	PF00700	Bacterial flagellin C-terminal helical region
AL539_15700	PF07196	Flagellin hook IN motif
AL539_15705	PF04261	Dyp-type peroxidase family
AL539_15710	PF11143	AL539_15710
AL539_15715	PF11169	AL539_15715
AL539_15720	PF13698	AL539_15720
AL539_15725	PF09904	Winged helix-turn helix
AL539_15730	PF03960	ArsC family
AL539_15735	PF01546	Peptidase family M20/M25/M40
AL539_15735	PF07687	Peptidase dimerisation domain
AL539_15740	PF02557	D-alanyl-D-alanine carboxypeptidase
AL539_15745	PF11446	AL539_15745
AL539_15750	PF06804	NlpB/DapX lipoprotein
AL539_15755	PF00701	Dihydrodipicolinate synthetase family
AL539_15760	PF13740	ACT domain
AL539_15765	PF00578	AhpC/TSA family
AL539_15770	PF01594	AL539_15770
AL539_15775	PF01206	Sulfurtransferase TusA
AL539_15780	PF01435	Peptidase family M48
AL539_15780	PF14559	Tetratricopeptide repeat
AL539_15785	PF03960	ArsC family
AL539_15790	PF03358	NADPH-dependent FMN reductase
AL539_15795	PF09842	AL539_15795
AL539_15800	PF09839	AL539_15800
AL539_15805	PF00860	Permease family
AL539_15810	PF14681	Uracil phosphoribosyltransferase
AL539_15815	PF00586	AIR synthase related protein, N-terminal domain
AL539_15815	PF02769	AIR synthase related protein, C-terminal domain
AL539_15820	PF00551	Formyl transferase
AL539_15825	PF13230	Glutamine amidotransferases class-II
AL539_15830	PF13580	SIS domain
AL539_15835	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL539_15835	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL539_15835	PF09317	AL539_15835
AL539_15840	PF00916	AL539_15840
AL539_15840	PF01740	STAS domain
AL539_15845	PF13508	Acetyltransferase (GNAT) domain
AL539_15850	PF07087	AL539_15850
AL539_15865	PF00929	Exonuclease
AL539_15870	PF00075	RNase H
AL539_15875	PF08241	Methyltransferase domain
AL539_15880	PF16123	AL539_15880
AL539_15885	PF01464	Transglycosylase SLT domain
AL539_15885	PF01476	LysM domain
AL539_15890	PF06930	AL539_15890
AL539_15895	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_15900	PF00543	Nitrogen regulatory protein P-II
AL539_15905	PF00034	Cytochrome c
AL539_15910	PF01171	PP-loop family
AL539_15910	PF09179	TilS substrate binding domain
AL539_15910	PF11734	TilS substrate C-terminal domain
AL539_15915	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
AL539_15920	PF01336	OB-fold nucleic acid binding domain
AL539_15920	PF02811	PHP domain
AL539_15920	PF07733	Bacterial DNA polymerase III alpha subunit
AL539_15920	PF14579	Helix-hairpin-helix motif
AL539_15925	PF01351	Ribonuclease HII
AL539_15930	PF02684	AL539_15930
AL539_15935	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_15935	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
AL539_15940	PF07977	FabA-like domain
AL539_15945	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_15945	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
AL539_15945	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_15950	PF03938	Outer membrane protein (OmpH-like)
AL539_15955	PF01103	Surface antigen
AL539_15955	PF07244	Surface antigen variable number repeat
AL539_15960	PF02163	Peptidase family M50
AL539_15960	PF13180	PDZ domain
AL539_15965	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
AL539_15965	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
AL539_15965	PF13288	DXP reductoisomerase C-terminal domain
AL539_15970	PF01148	Cytidylyltransferase family
AL539_15975	PF01255	Putative undecaprenyl diphosphate synthase
AL539_15980	PF01765	Ribosome recycling factor
AL539_15985	PF00696	Amino acid kinase family
AL539_15990	PF00889	Elongation factor TS
AL539_15995	PF00318	Ribosomal protein S2
AL539_16000	PF00557	Metallopeptidase family M24
AL539_16005	PF01842	ACT domain
AL539_16005	PF01909	Nucleotidyltransferase domain
AL539_16005	PF01966	HD domain
AL539_16005	PF08335	GlnD PII-uridylyltransferase
AL539_16010	PF11944	AL539_16010
AL539_16015	PF00849	RNA pseudouridylate synthase
AL539_16020	PF04287	tRNA pseudouridine synthase C
AL539_16025	PF12069	AL539_16025
AL539_16030	PF11743	AL539_16030
AL539_16035	PF13302	Acetyltransferase (GNAT) domain
AL539_16050	PF02639	AL539_16050
AL539_16055	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL539_16055	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL539_16060	PF01370	NAD dependent epimerase/dehydratase family
AL539_16065	PF00753	Metallo-beta-lactamase superfamily
AL539_16075	PF02655	ATP-grasp domain
AL539_16085	PF03806	AL539_16085
AL539_16090	PF00444	Ribosomal protein L36
AL539_16095	PF01197	Ribosomal protein L31
AL539_16100	PF01980	Uncharacterised protein family UPF0066
AL539_16105	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL539_16105	PF03129	Anticodon binding domain
AL539_16105	PF04073	Aminoacyl-tRNA editing domain
AL539_16110	PF04391	AL539_16110
AL539_16115	PF06786	AL539_16115
AL539_16120	PF14056	AL539_16120
AL539_16125	PF00209	Sodium:neurotransmitter symporter family
AL539_16130	PF00704	Glycosyl hydrolases family 18
AL539_16135	PF11101	AL539_16135
AL539_16140	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_16145	PF00270	DEAD/DEAH box helicase
AL539_16145	PF00271	Helicase conserved C-terminal domain
AL539_16145	PF16124	AL539_16145
AL539_16150	PF00817	impB/mucB/samB family
AL539_16150	PF11799	impB/mucB/samB family C-terminal domain
AL539_16155	PF10982	Protein of unknown function (DUF2789)
AL539_16160	PF00072	Response regulator receiver domain
AL539_16160	PF00990	GGDEF domain
AL539_16165	PF04400	AL539_16165
AL539_16170	PF02424	ApbE family
AL539_16175	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_16175	PF00175	Oxidoreductase NAD-binding domain
AL539_16175	PF00970	Oxidoreductase FAD-binding domain
AL539_16180	PF02508	AL539_16180
AL539_16185	PF02508	AL539_16185
AL539_16190	PF04205	FMN-binding domain
AL539_16195	PF03116	AL539_16195
AL539_16200	PF05896	AL539_16200
AL539_16200	PF11973	AL539_16200
AL539_16205	PF01722	BolA-like protein
AL539_16210	PF05175	Methyltransferase small domain
AL539_16210	PF08468	Methyltransferase small domain N-terminal
AL539_16215	PF03923	AL539_16215
AL539_16220	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL539_16225	PF07690	Major Facilitator Superfamily
AL539_16230	PF12973	ChrR Cupin-like domain
AL539_16235	PF04542	Sigma-70 region 2
AL539_16235	PF04545	Sigma-70, region 4
AL539_16240	PF14344	AL539_16240
AL539_16245	PF02190	ATP-dependent protease La (LON) domain
AL539_16255	PF03502	Nucleoside-specific channel-forming protein, Tsx
AL539_16260	PF02558	Ketopantoate reductase PanE/ApbA
AL539_16260	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AL539_16265	PF01965	DJ-1/PfpI family
AL539_16270	PF00266	Aminotransferase class-V
AL539_16275	PF00990	GGDEF domain
AL539_16280	PF02657	Fe-S metabolism associated domain
AL539_16285	PF00899	ThiF family
AL539_16290	PF03562	MltA specific insert domain
AL539_16290	PF06725	3D domain
AL539_16300	PF11012	AL539_16300
AL539_16305	PF00583	Acetyltransferase (GNAT) family
AL539_16305	PF00696	Amino acid kinase family
AL539_16325	PF13538	UvrD-like helicase C-terminal domain
AL539_16325	PF13604	AAA domain
AL539_16330	PF00580	UvrD/REP helicase N-terminal domain
AL539_16330	PF12705	PD-(D/E)XK nuclease superfamily
AL539_16330	PF13361	UvrD-like helicase C-terminal domain
AL539_16335	PF04257	Exodeoxyribonuclease V, gamma subunit
AL539_16340	PF00884	Sulfatase
AL539_16340	PF11893	AL539_16340
AL539_16345	PF03595	Voltage-dependent anion channel
AL539_16350	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_16350	PF03466	LysR substrate binding domain
AL539_16355	PF07130	YebG protein
AL539_16360	PF01592	NifU-like N terminal domain
AL539_16365	PF14057	AL539_16365
AL539_16370	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_16370	PF14789	Tetrahydrodipicolinate N-succinyltransferase middle
AL539_16375	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL539_16380	PF07690	Major Facilitator Superfamily
AL539_16390	PF00230	Major intrinsic protein
AL539_16395	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AL539_16395	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AL539_16400	PF00455	AL539_16400
AL539_16400	PF08220	DeoR-like helix-turn-helix domain
AL539_16405	PF01266	FAD dependent oxidoreductase
AL539_16405	PF16901	AL539_16405
AL539_16410	PF01544	CorA-like Mg2+ transporter protein
AL539_16415	PF05940	AL539_16415
AL539_16420	PF06094	AIG2-like family
AL539_16425	PF13505	Outer membrane protein beta-barrel domain
AL539_16430	PF00356	Bacterial regulatory proteins, lacI family
AL539_16430	PF13377	Periplasmic binding protein-like domain
AL539_16435	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_16435	PF03466	LysR substrate binding domain
AL539_16440	PF02417	AL539_16440
AL539_16445	PF00196	Bacterial regulatory proteins, luxR family
AL539_16460	PF03412	Peptidase C39 family
AL539_16470	PF13557	AL539_16470
AL539_16475	PF00501	AMP-binding enzyme
AL539_16480	PF06568	AL539_16480
AL539_16485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_16485	PF03466	LysR substrate binding domain
AL539_16490	PF00009	Elongation factor Tu GTP binding domain
AL539_16490	PF00679	Elongation factor G C-terminus
AL539_16490	PF03144	Elongation factor Tu domain 2
AL539_16490	PF03764	Elongation factor G, domain IV
AL539_16490	PF14492	Elongation Factor G, domain II
AL539_16495	PF13481	AAA domain
AL539_16495	PF13541	Subunit ChlI of Mg-chelatase
AL539_16500	PF07238	PilZ domain
AL539_16505	PF00702	haloacid dehalogenase-like hydrolase
AL539_16510	PF10144	AL539_16510
AL539_16515	PF01048	Phosphorylase superfamily
AL539_16520	PF01676	Metalloenzyme superfamily
AL539_16525	PF00591	Glycosyl transferase family, a/b domain
AL539_16525	PF02885	Glycosyl transferase family, helical bundle domain
AL539_16525	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AL539_16530	PF01791	DeoC/LacD family aldolase
AL539_16535	PF01773	Na+ dependent nucleoside transporter N-terminus
AL539_16535	PF07662	Na+ dependent nucleoside transporter C-terminus
AL539_16535	PF07670	Nucleoside recognition
AL539_16540	PF01026	TatD related DNase
AL539_16545	PF17320	AL539_16545
AL539_16550	PF00009	Elongation factor Tu GTP binding domain
AL539_16550	PF03144	Elongation factor Tu domain 2
AL539_16550	PF16658	AL539_16550
AL539_16555	PF00583	Acetyltransferase (GNAT) family
AL539_16560	PF03603	DNA polymerase III psi subunit
AL539_16570	PF13527	Acetyltransferase (GNAT) domain
AL539_16575	PF02036	SCP-2 sterol transfer family
AL539_16585	PF00563	EAL domain
AL539_16585	PF00990	GGDEF domain
AL539_16585	PF08448	PAS fold
AL539_16585	PF13188	PAS domain
AL539_16590	PF01136	AL539_16590
AL539_16595	PF01136	AL539_16595
AL539_16600	PF01554	MatE
AL539_16605	PF01047	MarR family
AL539_16615	PF00013	KH domain
AL539_16615	PF00575	S1 RNA binding domain
AL539_16615	PF01138	3' exoribonuclease family, domain 1
AL539_16615	PF03725	3' exoribonuclease family, domain 2
AL539_16615	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
AL539_16620	PF00312	Ribosomal protein S15
AL539_16625	PF01509	TruB family pseudouridylate synthase (N terminal domain)
AL539_16625	PF09157	Pseudouridine synthase II TruB, C-terminal
AL539_16625	PF16198	AL539_16625
AL539_16630	PF02033	Ribosome-binding factor A
AL539_16635	PF00009	Elongation factor Tu GTP binding domain
AL539_16635	PF03144	Elongation factor Tu domain 2
AL539_16635	PF04760	Translation initiation factor IF-2, N-terminal region
AL539_16635	PF08364	AL539_16635
AL539_16635	PF11987	Translation-initiation factor 2
AL539_16640	PF08529	NusA N-terminal domain
AL539_16640	PF13184	NusA-like KH domain
AL539_16640	PF14520	Helix-hairpin-helix domain
AL539_16645	PF02576	Uncharacterised BCR, YhbC family COG0779
AL539_16645	PF17384	AL539_16645
AL539_16660	PF03840	Preprotein translocase SecG subunit
AL539_16670	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL539_16670	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL539_16670	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL539_16670	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL539_16675	PF00809	Pterin binding enzyme
AL539_16680	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_16680	PF01434	Peptidase family M41
AL539_16680	PF06480	FtsH Extracellular
AL539_16685	PF01728	FtsJ-like methyltransferase
AL539_16690	PF01985	CRS1 / YhbY (CRM) domain
AL539_16695	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_16695	PF03449	Transcription elongation factor, N-terminal
AL539_16700	PF13609	Gram-negative porin
AL539_16705	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
AL539_16710	PF01769	Divalent cation transporter
AL539_16715	PF00579	tRNA synthetases class I (W and Y)
AL539_16715	PF01479	S4 domain
AL539_16720	PF01551	Peptidase family M23
AL539_16720	PF08525	AL539_16720
AL539_16725	PF00873	AcrB/AcrD/AcrF family
AL539_16730	PF16576	AL539_16730
AL539_16735	PF01521	Iron-sulphur cluster biosynthesis
AL539_16740	PF00202	Aminotransferase class-III
AL539_16745	PF01594	AL539_16745
AL539_16750	PF05175	Methyltransferase small domain
AL539_16750	PF08468	Methyltransferase small domain N-terminal
AL539_16755	PF00072	Response regulator receiver domain
AL539_16755	PF00512	His Kinase A (phospho-acceptor) domain
AL539_16755	PF00672	HAMP domain
AL539_16755	PF00989	PAS fold
AL539_16755	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_16760	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_16765	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_16770	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_16775	PF00005	ABC transporter
AL539_16775	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_16780	PF00005	ABC transporter
AL539_16780	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_16785	PF00759	Glycosyl hydrolase family 9
AL539_16785	PF02927	N-terminal ig-like domain of cellulase
AL539_16790	PF01869	BadF/BadG/BcrA/BcrD ATPase family
AL539_16795	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL539_16795	PF02838	Glycosyl hydrolase family 20, domain 2
AL539_16800	PF06165	Glycosyltransferase family 36
AL539_16800	PF17167	AL539_16800
AL539_16805	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL539_16805	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL539_16805	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL539_16805	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL539_16810	PF00005	ABC transporter
AL539_16810	PF08402	TOBE domain
AL539_16815	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_16820	PF13343	Bacterial extracellular solute-binding protein
AL539_16825	PF00909	Ammonium Transporter Family
AL539_16830	PF00543	Nitrogen regulatory protein P-II
AL539_16835	PF06062	AL539_16835
AL539_16840	PF00330	Aconitase family (aconitate hydratase)
AL539_16840	PF06434	Aconitate hydratase 2 N-terminus
AL539_16840	PF11791	Aconitate B N-terminal domain
AL539_16845	PF01734	Patatin-like phospholipase
AL539_16845	PF07244	Surface antigen variable number repeat
AL539_16850	PF00905	Penicillin binding protein transpeptidase domain
AL539_16850	PF00912	Transglycosylase
AL539_16850	PF14814	Bifunctional transglycosylase second domain
AL539_16855	PF00270	DEAD/DEAH box helicase
AL539_16855	PF00271	Helicase conserved C-terminal domain
AL539_16855	PF04408	Helicase associated domain (HA2)
AL539_16855	PF08482	AL539_16855
AL539_16860	PF03749	Sugar fermentation stimulation protein
AL539_16865	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL539_16870	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL539_16875	PF01743	Poly A polymerase head domain
AL539_16875	PF12626	Polymerase A arginine-rich C-terminus
AL539_16875	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL539_16880	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL539_16885	PF02548	Ketopantoate hydroxymethyltransferase
AL539_16890	PF02569	Pantoate-beta-alanine ligase
AL539_16895	PF03279	AL539_16895
AL539_16905	PF01061	AL539_16905
AL539_16910	PF00005	ABC transporter
AL539_16915	PF00916	AL539_16915
AL539_16915	PF01740	STAS domain
AL539_16920	PF00484	Carbonic anhydrase
AL539_16925	PF00156	Phosphoribosyl transferase domain
AL539_16930	PF00440	Bacterial regulatory proteins, tetR family
AL539_16935	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_16935	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_16940	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL539_16940	PF00364	Biotin-requiring enzyme
AL539_16940	PF02817	e3 binding domain
AL539_16945	PF00456	Transketolase, thiamine diphosphate binding domain
AL539_16950	PF00392	Bacterial regulatory proteins, gntR family
AL539_16950	PF07729	FCD domain
AL539_16955	PF01510	N-acetylmuramoyl-L-alanine amidase
AL539_16960	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
AL539_16960	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
AL539_16965	PF00114	Pilin (bacterial filament)
AL539_16965	PF07963	Prokaryotic N-terminal methylation motif
AL539_16970	PF00437	Type II/IV secretion system protein
AL539_16970	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
AL539_16975	PF00482	Type II secretion system (T2SS), protein F
AL539_16980	PF01478	Type IV leader peptidase family
AL539_16980	PF06750	AL539_16980
AL539_16985	PF01121	Dephospho-CoA kinase
AL539_16990	PF07072	Protein of unknown function (DUF1342)
AL539_16995	PF03884	Domain of unknown function (DUF329)
AL539_17000	PF01245	Ribosomal protein L19
AL539_17005	PF01746	tRNA (Guanine-1)-methyltransferase
AL539_17010	PF01782	RimM N-terminal domain
AL539_17010	PF05239	PRC-barrel domain
AL539_17015	PF00886	Ribosomal protein S16
AL539_17020	PF00448	SRP54-type protein, GTPase domain
AL539_17020	PF02881	SRP54-type protein, helical bundle domain
AL539_17020	PF02978	Signal peptide binding domain
AL539_17025	PF01578	AL539_17025
AL539_17030	PF00571	CBS domain
AL539_17030	PF01595	AL539_17030
AL539_17030	PF03471	Transporter associated domain
AL539_17035	PF02664	S-Ribosylhomocysteinase (LuxS)
AL539_17045	PF04262	Glutamate-cysteine ligase
AL539_17050	PF00675	Insulinase (Peptidase family M16)
AL539_17050	PF05193	Peptidase M16 inactive domain
AL539_17055	PF09335	AL539_17055
AL539_17060	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_17060	PF13602	Zinc-binding dehydrogenase
AL539_17065	PF03977	AL539_17065
AL539_17070	PF00364	Biotin-requiring enzyme
AL539_17070	PF00682	HMGL-like
AL539_17070	PF02436	Conserved carboxylase domain
AL539_17075	PF04277	AL539_17075
AL539_17130	PF02599	Global regulator protein family
AL539_17135	PF00696	Amino acid kinase family
AL539_17140	PF01411	tRNA synthetases class II (A)
AL539_17140	PF02272	DHHA1 domain
AL539_17140	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL539_17145	PF02631	RecX family
AL539_17150	PF00154	recA bacterial DNA recombination protein
AL539_17155	PF02464	Competence-damaged protein
AL539_17160	PF00488	MutS domain V
AL539_17160	PF01624	MutS domain I
AL539_17160	PF05188	MutS domain II
AL539_17160	PF05190	MutS family domain IV
AL539_17160	PF05192	MutS domain III
AL539_17165	PF00140	Sigma-70 factor, region 1
AL539_17165	PF04539	Sigma-70 region 3
AL539_17165	PF04542	Sigma-70 region 2
AL539_17165	PF04545	Sigma-70, region 4
AL539_17170	PF01476	LysM domain
AL539_17170	PF01551	Peptidase family M23
AL539_17175	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
AL539_17180	PF01975	Survival protein SurE
AL539_17185	PF01142	tRNA pseudouridine synthase D (TruD)
AL539_17190	PF02542	YgbB family
AL539_17195	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
AL539_17200	PF04977	Septum formation initiator
AL539_17205	PF00113	Enolase, C-terminal TIM barrel domain
AL539_17205	PF03952	Enolase, N-terminal domain
AL539_17210	PF00117	Glutamine amidotransferase class-I
AL539_17210	PF06418	CTP synthase N-terminus
AL539_17215	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL539_17220	PF02824	TGS domain
AL539_17220	PF04607	Region found in RelA / SpoT proteins
AL539_17220	PF13291	ACT domain
AL539_17220	PF13328	HD domain
AL539_17230	PF01938	TRAM domain
AL539_17230	PF05958	tRNA (Uracil-5-)-methyltransferase
AL539_17240	PF00072	Response regulator receiver domain
AL539_17240	PF00512	His Kinase A (phospho-acceptor) domain
AL539_17240	PF01627	Hpt domain
AL539_17240	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_17240	PF09984	AL539_17240
AL539_17245	PF01648	4'-phosphopantetheinyl transferase superfamily
AL539_17250	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
AL539_17255	PF02565	Recombination protein O C terminal
AL539_17255	PF11967	Recombination protein O N terminal
AL539_17260	PF01926	50S ribosome-binding GTPase
AL539_17260	PF07650	KH domain
AL539_17265	PF00035	Double-stranded RNA binding motif
AL539_17265	PF14622	Ribonuclease-III-like
AL539_17270	PF00717	Peptidase S24-like
AL539_17270	PF10502	Signal peptidase, peptidase S26
AL539_17275	PF00009	Elongation factor Tu GTP binding domain
AL539_17275	PF00679	Elongation factor G C-terminus
AL539_17275	PF03144	Elongation factor Tu domain 2
AL539_17275	PF06421	GTP-binding protein LepA C-terminus
AL539_17280	PF04246	AL539_17280
AL539_17285	PF03888	MucB/RseB family
AL539_17285	PF17188	AL539_17285
AL539_17290	PF03872	Anti sigma-E protein RseA, N-terminal domain
AL539_17290	PF03873	Anti sigma-E protein RseA, C-terminal domain
AL539_17295	PF04542	Sigma-70 region 2
AL539_17295	PF08281	Sigma-70, region 4
AL539_17305	PF00890	FAD binding domain
AL539_17305	PF02910	Fumarate reductase flavoprotein C-term
AL539_17315	PF03937	Flavinator of succinate dehydrogenase
AL539_17320	PF01571	Aminomethyltransferase folate-binding domain
AL539_17325	PF04073	Aminoacyl-tRNA editing domain
AL539_17330	PF06526	Protein of unknown function (DUF1107)
AL539_17335	PF01494	FAD binding domain
AL539_17340	PF01494	FAD binding domain
AL539_17345	PF03695	Uncharacterised protein family (UPF0149)
AL539_17355	PF05164	Cell division protein ZapA
AL539_17365	PF01812	5-formyltetrahydrofolate cyclo-ligase family
AL539_17370	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
AL539_17375	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL539_17375	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_17380	PF04402	Protein of unknown function (DUF541)
AL539_17385	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_17385	PF03466	LysR substrate binding domain
AL539_17390	PF01810	AL539_17390
AL539_17395	PF04073	Aminoacyl-tRNA editing domain
AL539_17400	PF00924	Mechanosensitive ion channel
AL539_17400	PF05552	Conserved TM helix
AL539_17405	PF01116	Fructose-bisphosphate aldolase class-II
AL539_17410	PF00162	Phosphoglycerate kinase
AL539_17415	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL539_17415	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL539_17420	PF00593	TonB dependent receptor
AL539_17420	PF07715	TonB-dependent Receptor Plug Domain
AL539_17425	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_17425	PF03466	LysR substrate binding domain
AL539_17430	PF00456	Transketolase, thiamine diphosphate binding domain
AL539_17430	PF02779	Transketolase, pyrimidine binding domain
AL539_17430	PF02780	Transketolase, C-terminal domain
AL539_17440	PF00438	S-adenosylmethionine synthetase, N-terminal domain
AL539_17440	PF02772	S-adenosylmethionine synthetase, central domain
AL539_17440	PF02773	S-adenosylmethionine synthetase, C-terminal domain
AL539_17445	PF09955	AL539_17445
AL539_17450	PF10263	AL539_17450
AL539_17450	PF17283	AL539_17450
AL539_17455	PF04231	Endonuclease I
AL539_17460	PF04452	RNA methyltransferase
AL539_17465	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
AL539_17465	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
AL539_17470	PF02622	Uncharacterized ACR, COG1678
AL539_17475	PF03652	Uncharacterised protein family (UPF0081)
AL539_17480	PF00437	Type II/IV secretion system protein
AL539_17485	PF00437	Type II/IV secretion system protein
AL539_17490	PF01168	Alanine racemase, N-terminal domain
AL539_17495	PF03807	NADP oxidoreductase coenzyme F420-dependent
AL539_17495	PF14748	Pyrroline-5-carboxylate reductase dimerisation
AL539_17500	PF02325	AL539_17500
AL539_17505	PF02594	Uncharacterised ACR, YggU family COG1872
AL539_17510	PF14467	Domain of unknown function (DUF4426)
AL539_17515	PF01725	Ham1 family
AL539_17520	PF04055	Radical SAM superfamily
AL539_17520	PF06969	HemN C-terminal domain
AL539_17525	PF04960	Glutaminase
AL539_17530	PF01170	Putative RNA methylase family UPF0020
AL539_17535	PF02390	Putative methyltransferase
AL539_17540	PF00633	Helix-hairpin-helix motif
AL539_17540	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL539_17540	PF14815	NUDIX domain
AL539_17550	PF09952	AL539_17550
AL539_17560	PF00753	Metallo-beta-lactamase superfamily
AL539_17560	PF14863	Alkyl sulfatase dimerisation
AL539_17560	PF14864	Alkyl sulfatase C-terminal
AL539_17570	PF01425	Amidase
AL539_17575	PF13599	Pentapeptide repeats (9 copies)
AL539_17580	PF13245	Part of AAA domain
AL539_17585	PF13175	AAA ATPase domain
AL539_17615	PF11665	AL539_17615
AL539_17625	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL539_17630	PF11665	AL539_17630
AL539_17640	PF13673	Acetyltransferase (GNAT) domain
AL539_17655	PF13289	AL539_17655
AL539_17665	PF00589	Phage integrase family
AL539_17675	PF00589	Phage integrase family
AL539_17685	PF12476	AL539_17685
AL539_17685	PF13304	AAA domain
AL539_17690	PF03235	AL539_17690
AL539_17695	PF00633	Helix-hairpin-helix motif
AL539_17695	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL539_17695	PF14815	NUDIX domain
AL539_17705	PF09952	AL539_17705
AL539_17715	PF00753	Metallo-beta-lactamase superfamily
AL539_17715	PF14863	Alkyl sulfatase dimerisation
AL539_17715	PF14864	Alkyl sulfatase C-terminal
AL539_17725	PF01425	Amidase
AL539_17730	PF13599	Pentapeptide repeats (9 copies)
AL539_17760	PF11665	AL539_17760
AL539_17775	PF11665	AL539_17775
AL539_17780	PF13673	Acetyltransferase (GNAT) domain
AL539_17800	PF13289	AL539_17800
AL539_17810	PF00589	Phage integrase family
AL539_17820	PF00589	Phage integrase family
AL539_17830	PF12476	AL539_17830
AL539_17830	PF13304	AAA domain
AL539_17835	PF03235	AL539_17835
AL539_17845	PF04362	Bacterial Fe(2+) trafficking
AL539_17850	PF01464	Transglycosylase SLT domain
AL539_17850	PF11873	Domain of unknown function (DUF3393)
AL539_17890	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_17890	PF17200	AL539_17890
AL539_17925	PF00171	Aldehyde dehydrogenase family
AL539_17970	PF01966	HD domain
AL539_17970	PF11871	AL539_17970
AL539_17975	PF00356	Bacterial regulatory proteins, lacI family
AL539_17975	PF13377	Periplasmic binding protein-like domain
AL539_17980	PF04794	YdjC-like protein
AL539_17985	PF02056	Family 4 glycosyl hydrolase
AL539_17985	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AL539_17990	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
AL539_17995	PF02378	Phosphotransferase system, EIIC
AL539_18000	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_18005	PF01522	Polysaccharide deacetylase
AL539_18015	PF00106	short chain dehydrogenase
AL539_18020	PF10011	Predicted membrane protein (DUF2254)
AL539_18025	PF06271	AL539_18025
AL539_18030	PF03739	AL539_18030
AL539_18035	PF03739	AL539_18035
AL539_18040	PF00883	Cytosol aminopeptidase family, catalytic domain
AL539_18040	PF02789	Cytosol aminopeptidase family, N-terminal domain
AL539_18045	PF04364	DNA polymerase III chi subunit, HolC
AL539_18050	PF00133	tRNA synthetases class I (I, L, M and V)
AL539_18050	PF08264	Anticodon-binding domain of tRNA
AL539_18050	PF10458	Valyl tRNA synthetase tRNA binding arm
AL539_18055	PF09834	AL539_18055
AL539_18060	PF00583	Acetyltransferase (GNAT) family
AL539_18060	PF12802	MarR family
AL539_18070	PF06877	Regulator of ribonuclease activity B
AL539_18075	PF02274	Amidinotransferase
AL539_18080	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL539_18080	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL539_18090	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL539_18090	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL539_18095	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
AL539_18095	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
AL539_18100	PF01042	Endoribonuclease L-PSP
AL539_18105	PF01553	Acyltransferase
AL539_18110	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL539_18115	PF01722	BolA-like protein
AL539_18120	PF13466	STAS domain
AL539_18125	PF05494	Toluene tolerance, Ttg2
AL539_18130	PF02470	AL539_18130
AL539_18135	PF02405	AL539_18135
AL539_18140	PF00005	ABC transporter
AL539_18145	PF01699	Sodium/calcium exchanger protein
AL539_18150	PF00571	CBS domain
AL539_18150	PF01380	SIS domain
AL539_18155	PF06835	Lipopolysaccharide-assembly, LptC-related
AL539_18160	PF03968	OstA-like protein
AL539_18165	PF00005	ABC transporter
AL539_18165	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AL539_18170	PF00309	AL539_18170
AL539_18170	PF04552	Sigma-54, DNA binding domain
AL539_18170	PF04963	Sigma-54 factor, core binding domain
AL539_18175	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL539_18180	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_18185	PF03668	AL539_18185
AL539_18190	PF00381	PTS HPr component phosphorylation site
AL539_18195	PF00571	CBS domain
AL539_18195	PF01769	Divalent cation transporter
AL539_18195	PF03448	MgtE intracellular N domain
AL539_18200	PF01523	Putative modulator of DNA gyrase
AL539_18205	PF04751	Protein of unknown function (DUF615)
AL539_18210	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL539_18210	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_18215	PF00849	RNA pseudouridylate synthase
AL539_18225	PF00176	SNF2 family N-terminal domain
AL539_18225	PF00271	Helicase conserved C-terminal domain
AL539_18225	PF12137	RNA polymerase recycling family C-terminal
AL539_18230	PF02562	PhoH-like protein
AL539_18230	PF13638	PIN domain
AL539_18235	PF01523	Putative modulator of DNA gyrase
AL539_18240	PF00795	Carbon-nitrogen hydrolase
AL539_18245	PF13116	AL539_18245
AL539_18245	PF13502	AL539_18245
AL539_18250	PF00575	S1 RNA binding domain
AL539_18250	PF10150	Ribonuclease E/G family
AL539_18255	PF02545	Maf-like protein
AL539_18260	PF04093	AL539_18260
AL539_18265	PF04085	rod shape-determining protein MreC
AL539_18270	PF06723	MreB/Mbl protein
AL539_18280	PF13737	AL539_18280
AL539_18290	PF00563	EAL domain
AL539_18290	PF00990	GGDEF domain
AL539_18290	PF17157	AL539_18290
AL539_18295	PF00436	Single-strand binding protein family
AL539_18300	PF00196	Bacterial regulatory proteins, luxR family
AL539_18305	PF00483	Nucleotidyl transferase
AL539_18310	PF00005	ABC transporter
AL539_18315	PF04932	AL539_18315
AL539_18315	PF11846	AL539_18315
AL539_18315	PF15864	AL539_18315
AL539_18320	PF00266	Aminotransferase class-V
AL539_18330	PF00696	Amino acid kinase family
AL539_18335	PF00809	Pterin binding enzyme
AL539_18335	PF02310	B12 binding domain
AL539_18335	PF02574	Homocysteine S-methyltransferase
AL539_18335	PF02607	B12 binding domain
AL539_18335	PF02965	Vitamin B12 dependent methionine synthase, activation domain
AL539_18340	PF00999	Sodium/hydrogen exchanger family
AL539_18400	PF01507	Phosphoadenosine phosphosulfate reductase family
AL539_18405	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL539_18405	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL539_18410	PF00175	Oxidoreductase NAD-binding domain
AL539_18410	PF00258	Flavodoxin
AL539_18410	PF00667	FAD binding domain
AL539_18420	PF13505	Outer membrane protein beta-barrel domain
AL539_18425	PF09583	AL539_18425
AL539_18430	PF01207	Dihydrouridine synthase (Dus)
AL539_18435	PF01475	Ferric uptake regulator family
AL539_18440	PF13690	Chemotaxis phosphatase CheX
AL539_18445	PF00342	Phosphoglucose isomerase
AL539_18450	PF01894	Uncharacterised protein family UPF0047
AL539_18455	PF00842	Alanine racemase, C-terminal domain
AL539_18455	PF01168	Alanine racemase, N-terminal domain
AL539_18460	PF00772	DnaB-like helicase N terminal domain
AL539_18460	PF03796	DnaB-like helicase C terminal domain
AL539_18465	PF04338	Protein of unknown function, DUF481
AL539_18470	PF01281	Ribosomal protein L9, N-terminal domain
AL539_18470	PF03948	Ribosomal protein L9, C-terminal domain
AL539_18475	PF01084	Ribosomal protein S18
AL539_18480	PF00436	Single-strand binding protein family
AL539_18485	PF01250	Ribosomal protein S6
AL539_18490	PF00834	Ribulose-phosphate 3 epimerase family
AL539_18495	PF02086	D12 class N6 adenine-specific DNA methyltransferase
AL539_18500	PF05036	Sporulation related domain
AL539_18500	PF13401	AAA domain
AL539_18505	PF01761	3-dehydroquinate synthase
AL539_18510	PF01202	Shikimate kinase
AL539_18515	PF00263	AL539_18515
AL539_18515	PF03958	Bacterial type II/III secretion system short domain
AL539_18520	PF04351	Pilus assembly protein, PilP
AL539_18525	PF04350	Pilus assembly protein, PilO
AL539_18530	PF05137	AL539_18530
AL539_18535	PF11104	Type IV pilus assembly protein PilM;
AL539_18540	PF00905	Penicillin binding protein transpeptidase domain
AL539_18540	PF00912	Transglycosylase
AL539_18540	PF17092	AL539_18540
AL539_18545	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_18545	PF03466	LysR substrate binding domain
AL539_18550	PF00462	Glutaredoxin
AL539_18550	PF08534	Redoxin
AL539_18555	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_18555	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_18560	PF12292	AL539_18560
AL539_18565	PF00206	Lyase
AL539_18565	PF00583	Acetyltransferase (GNAT) family
AL539_18565	PF14698	Argininosuccinate lyase C-terminal
AL539_18570	PF00764	Arginosuccinate synthase
AL539_18575	PF00696	Amino acid kinase family
AL539_18580	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL539_18580	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL539_18585	PF01546	Peptidase family M20/M25/M40
AL539_18585	PF07687	Peptidase dimerisation domain
AL539_18590	PF00311	Phosphoenolpyruvate carboxylase
AL539_18595	PF03551	Transcriptional regulator PadR-like family
AL539_18595	PF10400	Virulence activator alpha C-term
AL539_18600	PF02219	Methylenetetrahydrofolate reductase
AL539_18605	PF00696	Amino acid kinase family
AL539_18605	PF00742	Homoserine dehydrogenase
AL539_18605	PF03447	Homoserine dehydrogenase, NAD binding domain
AL539_18610	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL539_18615	PF01340	Met Apo-repressor, MetJ
AL539_18620	PF00390	Malic enzyme, N-terminal domain
AL539_18620	PF03949	Malic enzyme, NAD binding domain
AL539_18625	PF00210	Ferritin-like domain
AL539_18630	PF04324	BFD-like [2Fe-2S] binding domain
AL539_18635	PF00009	Elongation factor Tu GTP binding domain
AL539_18635	PF03143	Elongation factor Tu C-terminal domain
AL539_18635	PF03144	Elongation factor Tu domain 2
AL539_18640	PF00009	Elongation factor Tu GTP binding domain
AL539_18640	PF00679	Elongation factor G C-terminus
AL539_18640	PF03144	Elongation factor Tu domain 2
AL539_18640	PF03764	Elongation factor G, domain IV
AL539_18640	PF14492	Elongation Factor G, domain II
AL539_18645	PF00177	Ribosomal protein S7p/S5e
AL539_18650	PF00164	Ribosomal protein S12/S23
AL539_18655	PF04077	DsrH like protein
AL539_18660	PF02635	DsrE/DsrF-like family
AL539_18665	PF02635	DsrE/DsrF-like family
AL539_18670	PF08348	AL539_18670
AL539_18670	PF13309	AL539_18670
AL539_18675	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_18675	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL539_18680	PF13360	PQQ-like domain
AL539_18685	PF04102	SlyX
AL539_18690	PF01112	Asparaginase
AL539_18700	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_18705	PF09526	AL539_18705
AL539_18710	PF00999	Sodium/hydrogen exchanger family
AL539_18710	PF02254	TrkA-N domain
AL539_18715	PF02525	Flavodoxin-like fold
AL539_18720	PF00005	ABC transporter
AL539_18720	PF12848	ABC transporter
AL539_18725	PF09523	AL539_18725
AL539_18730	PF00561	alpha/beta hydrolase fold
AL539_18735	PF06794	Uncharacterised protein family (UPF0270)
AL539_18740	PF00485	Phosphoribulokinase / Uridine kinase family
AL539_18745	PF00027	Cyclic nucleotide-binding domain
AL539_18745	PF00325	Bacterial regulatory proteins, crp family
AL539_18750	PF07063	Domain of unknown function (DUF1338)
AL539_18755	PF00171	Aldehyde dehydrogenase family
AL539_18760	PF04958	Arginine N-succinyltransferase beta subunit
AL539_18765	PF00202	Aminotransferase class-III
AL539_18770	PF00117	Glutamine amidotransferase class-I
AL539_18775	PF01047	MarR family
AL539_18780	PF00892	EamA-like transporter family
AL539_18785	PF03358	NADPH-dependent FMN reductase
AL539_18790	PF01546	Peptidase family M20/M25/M40
AL539_18790	PF07687	Peptidase dimerisation domain
AL539_18795	PF03806	AL539_18795
AL539_18800	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_18800	PF03466	LysR substrate binding domain
AL539_18805	PF00932	Lamin Tail Domain
AL539_18805	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_18815	PF00579	tRNA synthetases class I (W and Y)
AL539_18820	PF13419	Haloacid dehalogenase-like hydrolase
AL539_18825	PF00588	SpoU rRNA Methylase family
AL539_18825	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AL539_18830	PF00575	S1 RNA binding domain
AL539_18830	PF00773	RNB domain
AL539_18830	PF08206	Ribonuclease B OB domain
AL539_18830	PF08461	Ribonuclease R winged-helix domain
AL539_18835	PF02082	Transcriptional regulator
AL539_18840	PF00042	Globin
AL539_18840	PF00175	Oxidoreductase NAD-binding domain
AL539_18840	PF00970	Oxidoreductase FAD-binding domain
AL539_18845	PF08238	Sel1 repeat
AL539_18855	PF00709	Adenylosuccinate synthetase
AL539_18860	PF09838	AL539_18860
AL539_18865	PF01145	SPFH domain / Band 7 family
AL539_18870	PF01145	SPFH domain / Band 7 family
AL539_18870	PF12221	AL539_18870
AL539_18875	PF01926	50S ribosome-binding GTPase
AL539_18875	PF13167	AL539_18875
AL539_18875	PF16360	AL539_18875
AL539_18880	PF17209	AL539_18880
AL539_18885	PF01715	IPP transferase
AL539_18890	PF01119	DNA mismatch repair protein, C-terminal domain
AL539_18890	PF08676	MutL C terminal dimerisation domain
AL539_18890	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_18895	PF01476	LysM domain
AL539_18895	PF01520	N-acetylmuramoyl-L-alanine amidase
AL539_18895	PF11741	AMIN domain
AL539_18900	PF02367	Uncharacterised P-loop hydrolase UPF0079
AL539_18910	PF08331	AL539_18910
AL539_18910	PF13484	AL539_18910
AL539_18975	PF00929	Exonuclease
AL539_18980	PF03193	Protein of unknown function, DUF258
AL539_18985	PF02666	AL539_18985
AL539_18990	PF00939	Sodium:sulfate symporter transmembrane region
AL539_18995	PF00892	EamA-like transporter family
AL539_19000	PF01676	Metalloenzyme superfamily
AL539_19000	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
AL539_19005	PF00581	Rhodanese-like domain
AL539_19010	PF02556	Preprotein translocase subunit SecB
AL539_19015	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
AL539_19015	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
AL539_19020	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_19020	PF06426	Serine acetyltransferase, N-terminal
AL539_19025	PF01551	Peptidase family M23
AL539_19035	PF00440	Bacterial regulatory proteins, tetR family
AL539_19035	PF13972	Bacterial transcriptional repressor
AL539_19040	PF04892	AL539_19040
AL539_19045	PF00152	tRNA synthetases class II (D, K and N)
AL539_19050	PF00890	FAD binding domain
AL539_19050	PF02910	Fumarate reductase flavoprotein C-term
AL539_19055	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL539_19055	PF13183	4Fe-4S dicluster domain
AL539_19060	PF02300	Fumarate reductase subunit C
AL539_19065	PF02313	Fumarate reductase subunit D
AL539_19070	PF01145	SPFH domain / Band 7 family
AL539_19075	PF01132	Elongation factor P (EF-P) OB domain
AL539_19075	PF08207	Elongation factor P (EF-P) KOW-like domain
AL539_19075	PF09285	Elongation factor P, C-terminal
AL539_19080	PF04055	Radical SAM superfamily
AL539_19080	PF13353	4Fe-4S single cluster domain
AL539_19085	PF02308	AL539_19085
AL539_19095	PF00118	TCP-1/cpn60 chaperonin family
AL539_19100	PF00166	Chaperonin 10 Kd subunit
AL539_19105	PF01554	MatE
AL539_19110	PF00365	Phosphofructokinase
AL539_19115	PF01545	Cation efflux family
AL539_19115	PF16916	AL539_19115
AL539_19120	PF07813	LTXXQ motif family protein
AL539_19125	PF00072	Response regulator receiver domain
AL539_19125	PF00486	Transcriptional regulatory protein, C terminal
AL539_19130	PF00512	His Kinase A (phospho-acceptor) domain
AL539_19130	PF00672	HAMP domain
AL539_19130	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_19130	PF16527	AL539_19130
AL539_19135	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL539_19135	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL539_19140	PF00588	SpoU rRNA Methylase family
AL539_19145	PF04186	AL539_19145
AL539_19150	PF00206	Lyase
AL539_19150	PF10415	Fumarase C C-terminus
AL539_19155	PF03605	AL539_19155
AL539_19160	PF02683	AL539_19160
AL539_19160	PF11412	Disulphide bond corrector protein DsbC
AL539_19160	PF13899	Thioredoxin-like
AL539_19165	PF00072	Response regulator receiver domain
AL539_19165	PF00196	Bacterial regulatory proteins, luxR family
AL539_19170	PF00999	Sodium/hydrogen exchanger family
AL539_19170	PF02080	TrkA-C domain
AL539_19170	PF03471	Transporter associated domain
AL539_19175	PF13937	AL539_19175
AL539_19180	PF00474	Sodium:solute symporter family
AL539_19195	PF00206	Lyase
AL539_19195	PF10415	Fumarase C C-terminus
AL539_19200	PF00072	Response regulator receiver domain
AL539_19200	PF00512	His Kinase A (phospho-acceptor) domain
AL539_19200	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_19200	PF12860	AL539_19200
AL539_19205	PF12832	MFS_1 like family
AL539_19210	PF00027	Cyclic nucleotide-binding domain
AL539_19210	PF03445	AL539_19210
AL539_19210	PF10335	AL539_19210
AL539_19215	PF00929	Exonuclease
AL539_19220	PF00501	AMP-binding enzyme
AL539_19220	PF13193	AMP-binding enzyme C-terminal domain
AL539_19220	PF16177	AL539_19220
AL539_19225	PF01220	Dehydroquinase class II
AL539_19230	PF00364	Biotin-requiring enzyme
AL539_19235	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AL539_19235	PF02785	Biotin carboxylase C-terminal domain
AL539_19235	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL539_19245	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
AL539_19250	PF01207	Dihydrouridine synthase (Dus)
AL539_19255	PF02954	Bacterial regulatory protein, Fis family
AL539_19260	PF07690	Major Facilitator Superfamily
AL539_19265	PF00005	ABC transporter
AL539_19265	PF12848	ABC transporter
AL539_19330	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL539_19330	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AL539_19330	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AL539_19335	PF13520	Amino acid permease
AL539_19345	PF00486	Transcriptional regulatory protein, C terminal
AL539_19350	PF00376	MerR family regulatory protein
AL539_19350	PF09278	MerR, DNA binding
AL539_19360	PF01808	AICARFT/IMPCHase bienzyme
AL539_19360	PF02142	MGS-like domain
AL539_19365	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
AL539_19365	PF02843	Phosphoribosylglycinamide synthetase, C domain
AL539_19365	PF02844	Phosphoribosylglycinamide synthetase, N domain
AL539_19370	PF07356	AL539_19370
AL539_19375	PF00216	Bacterial DNA-binding protein
AL539_19380	PF00571	CBS domain
AL539_19380	PF01595	AL539_19380
AL539_19385	PF04222	Protein of unknown function (DUF416)
AL539_19390	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL539_19395	PF03167	Uracil DNA glycosylase superfamily
AL539_19400	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AL539_19405	PF00293	NUDIX domain
AL539_19405	PF09297	NADH pyrophosphatase zinc ribbon domain
AL539_19410	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
AL539_19415	PF00623	RNA polymerase Rpb1, domain 2
AL539_19415	PF04983	RNA polymerase Rpb1, domain 3
AL539_19415	PF04997	RNA polymerase Rpb1, domain 1
AL539_19415	PF04998	RNA polymerase Rpb1, domain 5
AL539_19415	PF05000	RNA polymerase Rpb1, domain 4
AL539_19420	PF00562	RNA polymerase Rpb2, domain 6
AL539_19420	PF04560	RNA polymerase Rpb2, domain 7
AL539_19420	PF04561	RNA polymerase Rpb2, domain 2
AL539_19420	PF04563	RNA polymerase beta subunit
AL539_19420	PF04565	RNA polymerase Rpb2, domain 3
AL539_19420	PF10385	RNA polymerase beta subunit external 1 domain
AL539_19425	PF00542	Ribosomal protein L7/L12 C-terminal domain
AL539_19425	PF16320	AL539_19425
AL539_19430	PF00466	Ribosomal protein L10
AL539_19435	PF00687	Ribosomal protein L1p/L10e family
AL539_19440	PF00298	Ribosomal protein L11, RNA binding domain
AL539_19440	PF03946	Ribosomal protein L11, N-terminal domain
AL539_19445	PF00467	KOW motif
AL539_19445	PF02357	Transcription termination factor nusG
AL539_19450	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
AL539_19460	PF00009	Elongation factor Tu GTP binding domain
AL539_19460	PF03143	Elongation factor Tu C-terminal domain
AL539_19460	PF03144	Elongation factor Tu domain 2
AL539_19485	PF00485	Phosphoribulokinase / Uridine kinase family
AL539_19490	PF02237	Biotin protein ligase C terminal domain
AL539_19490	PF03099	Biotin/lipoate A/B protein ligase family
AL539_19490	PF08279	HTH domain
AL539_19495	PF01565	FAD binding domain
AL539_19495	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
AL539_19500	PF13508	Acetyltransferase (GNAT) domain
AL539_19505	PF13091	PLD-like domain
AL539_19570	PF00076	RNA recognition motif
AL539_19575	PF01177	Asp/Glu/Hydantoin racemase
AL539_19580	PF01902	ATP-binding region
AL539_19585	PF00593	TonB dependent receptor
AL539_19585	PF07715	TonB-dependent Receptor Plug Domain
AL539_19590	PF05958	tRNA (Uracil-5-)-methyltransferase
AL539_19595	PF07226	AL539_19595
AL539_19600	PF00440	Bacterial regulatory proteins, tetR family
AL539_19605	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_19605	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_19610	PF01554	MatE
AL539_19615	PF04072	Leucine carboxyl methyltransferase
AL539_19625	PF00717	Peptidase S24-like
AL539_19625	PF01726	LexA DNA binding domain
AL539_19635	PF01553	Acyltransferase
AL539_19640	PF01040	UbiA prenyltransferase family
AL539_19645	PF04345	Chorismate lyase
AL539_19650	PF03748	AL539_19650
AL539_19655	PF01694	Rhomboid family
AL539_19655	PF12122	Protein of unknown function (DUF3582)
AL539_19660	PF00581	Rhodanese-like domain
AL539_19670	PF00140	Sigma-70 factor, region 1
AL539_19670	PF04542	Sigma-70 region 2
AL539_19670	PF04545	Sigma-70, region 4
AL539_19680	PF00005	ABC transporter
AL539_19685	PF00448	SRP54-type protein, GTPase domain
AL539_19685	PF02881	SRP54-type protein, helical bundle domain
AL539_19690	PF03602	Conserved hypothetical protein 95
AL539_19695	PF06611	AL539_19695
AL539_19700	PF01914	AL539_19700
AL539_19705	PF10678	AL539_19705
AL539_19710	PF07947	AL539_19710
AL539_19720	PF13643	AL539_19720
AL539_19725	PF10694	Protein of unknown function (DUF2500)
AL539_19730	PF01757	AL539_19730
AL539_19735	PF07690	Major Facilitator Superfamily
AL539_19740	PF05706	Cyclin-dependent kinase inhibitor 3 (CDKN3)
AL539_19745	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL539_19745	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL539_19750	PF01022	Bacterial regulatory protein, arsR family
AL539_19755	PF00563	EAL domain
AL539_19755	PF08668	HDOD domain
AL539_19760	PF01810	AL539_19760
AL539_19765	PF12146	Putative lysophospholipase
AL539_19770	PF08282	haloacid dehalogenase-like hydrolase
AL539_19775	PF01878	EVE domain
AL539_19785	PF03942	AL539_19785
AL539_19790	PF00563	EAL domain
AL539_19790	PF00990	GGDEF domain
AL539_19790	PF08495	AL539_19790
AL539_19790	PF10442	AL539_19790
AL539_19795	PF13419	Haloacid dehalogenase-like hydrolase
AL539_19800	PF00589	Phage integrase family
AL539_19800	PF02899	Phage integrase, N-terminal SAM-like domain
AL539_19805	PF04340	Protein of unknown function, DUF484
AL539_19810	PF01678	Diaminopimelate epimerase
AL539_19815	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL539_19815	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL539_19825	PF01491	Frataxin-like domain
AL539_19830	PF01295	AL539_19830
AL539_19830	PF12633	AL539_19830
AL539_19835	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
AL539_19835	PF03900	Porphobilinogen deaminase, C-terminal domain
AL539_19840	PF02602	Uroporphyrinogen-III synthase HemD
AL539_19845	PF04375	AL539_19845
AL539_19850	PF07219	AL539_19850
AL539_19890	PF00175	Oxidoreductase NAD-binding domain
AL539_19895	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_19900	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AL539_19910	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_19910	PF07497	Rho termination factor, RNA-binding domain
AL539_19910	PF07498	Rho termination factor, N-terminal domain
AL539_19915	PF00085	Thioredoxin
AL539_19920	PF00270	DEAD/DEAH box helicase
AL539_19920	PF00271	Helicase conserved C-terminal domain
AL539_19925	PF02541	Ppx/GppA phosphatase family
AL539_19930	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL539_19930	PF04321	RmlD substrate binding domain
AL539_19935	PF02592	AL539_19935
AL539_19940	PF12305	AL539_19940
AL539_19945	PF00270	DEAD/DEAH box helicase
AL539_19945	PF00271	Helicase conserved C-terminal domain
AL539_19945	PF00570	HRDC domain
AL539_19945	PF09382	RQC domain
AL539_19945	PF16124	AL539_19945
AL539_19950	PF00892	EamA-like transporter family
AL539_19955	PF02311	AraC-like ligand binding domain
AL539_19955	PF12833	Helix-turn-helix domain
AL539_19960	PF01810	AL539_19960
AL539_19965	PF01019	Gamma-glutamyltranspeptidase
AL539_19975	PF00580	UvrD/REP helicase N-terminal domain
AL539_19975	PF13361	UvrD-like helicase C-terminal domain
AL539_19980	PF10048	AL539_19980
AL539_19985	PF05114	Protein of unknown function (DUF692)
AL539_19990	PF09836	Uncharacterized protein conserved in bacteria (DUF2063)
AL539_19995	PF07681	AL539_19995
AL539_20005	PF07690	Major Facilitator Superfamily
AL539_20010	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_20010	PF03466	LysR substrate binding domain
AL539_20015	PF00557	Metallopeptidase family M24
AL539_20015	PF01321	Creatinase/Prolidase N-terminal domain
AL539_20015	PF16188	AL539_20015
AL539_20015	PF16189	AL539_20015
AL539_20020	PF04055	Radical SAM superfamily
AL539_20020	PF06968	Biotin and Thiamin Synthesis associated domain
AL539_20025	PF05690	Thiazole biosynthesis protein ThiG
AL539_20030	PF02597	ThiS family
AL539_20035	PF00899	ThiF family
AL539_20040	PF02581	Thiamine monophosphate synthase/TENI
AL539_20045	PF01964	ThiC family
AL539_20045	PF13667	ThiC-associated domain
AL539_20050	PF02537	AL539_20050
AL539_20055	PF00394	Multicopper oxidase
AL539_20055	PF07731	Multicopper oxidase
AL539_20055	PF07732	Multicopper oxidase
AL539_20055	PF10518	TAT (twin-arginine translocation) pathway signal sequence
AL539_20070	PF13031	AL539_20070
AL539_20080	PF03175	DNA polymerase type B, organellar and viral
AL539_20105	PF13280	AL539_20105
AL539_20110	PF10980	Protein of unknown function (DUF2787)
AL539_20125	PF00589	Phage integrase family
AL539_20125	PF13356	Domain of unknown function (DUF4102)
AL539_20185	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_20190	PF07369	Protein of unknown function (DUF1488)
AL539_20195	PF01488	Shikimate / quinate 5-dehydrogenase
AL539_20195	PF08501	Shikimate dehydrogenase substrate binding domain
AL539_20200	PF01218	Coproporphyrinogen III oxidase
AL539_20205	PF01300	Telomere recombination
AL539_20210	PF00731	AIR carboxylase
AL539_20215	PF02222	ATP-grasp domain
AL539_20220	PF01396	AL539_20220
AL539_20225	PF04361	AL539_20225
AL539_20230	PF02481	DNA recombination-mediator protein A
AL539_20235	PF01476	LysM domain
AL539_20240	PF01327	Polypeptide deformylase
AL539_20245	PF00551	Formyl transferase
AL539_20245	PF02911	Formyl transferase, C-terminal domain
AL539_20250	PF01029	NusB family
AL539_20250	PF01189	NOL1/NOP2/sun family
AL539_20255	PF02080	TrkA-C domain
AL539_20255	PF02254	TrkA-N domain
AL539_20260	PF02386	Cation transport protein
AL539_20265	PF11355	AL539_20265
AL539_20270	PF03006	AL539_20270
AL539_20275	PF07070	AL539_20275
AL539_20285	PF06288	Protein of unknown function (DUF1040)
AL539_20290	PF11614	IG-like fold at C-terminal of FixG, putative oxidoreductase
AL539_20290	PF12801	AL539_20290
AL539_20290	PF13746	4Fe-4S dicluster domain
AL539_20295	PF01636	Phosphotransferase enzyme family
AL539_20300	PF01323	DSBA-like thioredoxin domain
AL539_20305	PF01553	Acyltransferase
AL539_20310	PF11059	AL539_20310
AL539_20315	PF01078	Magnesium chelatase, subunit ChlI
AL539_20315	PF13335	AL539_20315
AL539_20315	PF13541	Subunit ChlI of Mg-chelatase
AL539_20320	PF00205	Thiamine pyrophosphate enzyme, central domain
AL539_20320	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL539_20320	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL539_20325	PF13710	ACT domain
AL539_20330	PF01063	Aminotransferase class IV
AL539_20335	PF00920	Dehydratase family
AL539_20340	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_20340	PF00585	C-terminal regulatory domain of Threonine dehydratase
AL539_20345	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_20345	PF03466	LysR substrate binding domain
AL539_20350	PF07690	Major Facilitator Superfamily
AL539_20355	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_20360	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_20365	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_20365	PF12804	MobA-like NTP transferase domain
AL539_20370	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
AL539_20370	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
AL539_20375	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_20375	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL539_20380	PF00231	ATP synthase
AL539_20385	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL539_20385	PF00306	ATP synthase alpha/beta chain, C terminal domain
AL539_20385	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL539_20390	PF00213	ATP synthase delta (OSCP) subunit
AL539_20395	PF00430	ATP synthase B/B' CF(0)
AL539_20400	PF00137	ATP synthase subunit C
AL539_20405	PF00119	ATP synthase A chain
AL539_20410	PF03899	AL539_20410
AL539_20415	PF02195	ParB-like nuclease domain
AL539_20420	PF13614	AAA domain
AL539_20425	PF02527	rRNA small subunit methyltransferase G
AL539_20430	PF01134	Glucose inhibited division protein A
AL539_20430	PF13932	GidA associated domain 3
AL539_20440	PF00258	Flavodoxin
AL539_20445	PF01926	50S ribosome-binding GTPase
AL539_20445	PF10396	GTP-binding protein TrmE N-terminus
AL539_20445	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
AL539_20450	PF02096	60Kd inner membrane protein
AL539_20450	PF14849	YidC periplasmic domain
AL539_20455	PF01809	AL539_20455
AL539_20460	PF00825	Ribonuclease P
AL539_20465	PF00468	Ribosomal protein L34
AL539_20470	PF00005	ABC transporter
AL539_20475	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_20480	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_20490	PF00308	Bacterial dnaA  protein
AL539_20490	PF08299	Bacterial dnaA protein helix-turn-helix
AL539_20490	PF11638	DnaA N-terminal domain
AL539_20495	PF00712	DNA polymerase III beta subunit, N-terminal domain
AL539_20495	PF02767	DNA polymerase III beta subunit, central domain
AL539_20495	PF02768	DNA polymerase III beta subunit, C-terminal domain
AL539_20500	PF02463	RecF/RecN/SMC N terminal domain
AL539_20505	PF00204	DNA gyrase B
AL539_20505	PF00986	DNA gyrase B subunit, carboxyl terminus
AL539_20505	PF01751	Toprim domain
AL539_20505	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_20515	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_20525	PF00011	Hsp20/alpha crystallin family
AL539_20530	PF00155	Aminotransferase class I and II
AL539_20535	PF00128	Alpha amylase, catalytic domain
AL539_20540	PF02092	AL539_20540
AL539_20540	PF05746	DALR anticodon binding domain
AL539_20545	PF02091	Glycyl-tRNA synthetase alpha subunit
AL539_20550	PF01169	AL539_20550
AL539_20560	PF01206	Sulfurtransferase TusA
AL539_20570	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_20570	PF03466	LysR substrate binding domain
AL539_20575	PF00107	Zinc-binding dehydrogenase
AL539_20575	PF08240	Alcohol dehydrogenase GroES-like domain
AL539_20580	PF00108	Thiolase, N-terminal domain
AL539_20580	PF02803	Thiolase, C-terminal domain
AL539_20585	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_20585	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AL539_20585	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AL539_20590	PF01205	Uncharacterized protein family UPF0029
AL539_20590	PF09186	Domain of unknown function (DUF1949)
AL539_20595	PF02386	Cation transport protein
AL539_20600	PF12724	Flavodoxin domain
AL539_20640	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_20640	PF03466	LysR substrate binding domain
AL539_20645	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
AL539_20645	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
AL539_20650	PF04380	AL539_20650
AL539_20655	PF00873	AcrB/AcrD/AcrF family
AL539_20660	PF16576	AL539_20660
AL539_20665	PF00440	Bacterial regulatory proteins, tetR family
AL539_20665	PF16295	AL539_20665
AL539_20670	PF00580	UvrD/REP helicase N-terminal domain
AL539_20670	PF13361	UvrD-like helicase C-terminal domain
AL539_20675	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL539_20705	PF13419	Haloacid dehalogenase-like hydrolase
AL539_20715	PF00005	ABC transporter
AL539_20715	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_20720	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_20725	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_20730	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_20730	PF12911	AL539_20730
AL539_20740	PF05036	Sporulation related domain
AL539_20745	PF00356	Bacterial regulatory proteins, lacI family
AL539_20745	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL539_20750	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_20750	PF03466	LysR substrate binding domain
AL539_20755	PF00893	Small Multidrug Resistance protein
AL539_20760	PF00893	Small Multidrug Resistance protein
AL539_20765	PF00920	Dehydratase family
AL539_20770	PF01202	Shikimate kinase
AL539_20775	PF02447	AL539_20775
AL539_20780	PF01081	KDPG and KHG aldolase
AL539_20785	PF01048	Phosphorylase superfamily
AL539_20790	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_20790	PF03466	LysR substrate binding domain
AL539_20795	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL539_20795	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_20800	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
AL539_20805	PF01432	Peptidase family M3
AL539_20810	PF01037	AsnC family
AL539_20810	PF13404	AsnC-type helix-turn-helix domain
AL539_20815	PF00563	EAL domain
AL539_20815	PF00990	GGDEF domain
AL539_20815	PF13426	PAS domain
AL539_20820	PF04445	Putative SAM-dependent methyltransferase
AL539_20830	PF00892	EamA-like transporter family
AL539_20835	PF00582	Universal stress protein family
AL539_20840	PF00210	Ferritin-like domain
AL539_20845	PF10625	AL539_20845
AL539_20850	PF03486	HI0933-like protein
AL539_20855	PF00158	Sigma-54 interaction domain
AL539_20855	PF02954	Bacterial regulatory protein, Fis family
AL539_20860	PF04972	BON domain
AL539_20865	PF07043	AL539_20865
AL539_20875	PF01814	Hemerythrin HHE cation binding domain
AL539_20880	PF00781	Diacylglycerol kinase catalytic domain
AL539_20880	PF00782	Dual specificity phosphatase, catalytic domain
AL539_20890	PF09537	Domain of unknown function (DUF2383)
AL539_20910	PF01594	AL539_20910
AL539_20915	PF00563	EAL domain
AL539_20915	PF00990	GGDEF domain
AL539_20915	PF08448	PAS fold
AL539_20915	PF13426	PAS domain
AL539_20920	PF00892	EamA-like transporter family
AL539_20925	PF02646	AL539_20925
AL539_20930	PF01209	ubiE/COQ5 methyltransferase family
AL539_20935	PF02036	SCP-2 sterol transfer family
AL539_20940	PF03109	AL539_20940
AL539_20945	PF02416	mttA/Hcf106 family
AL539_20950	PF02416	mttA/Hcf106 family
AL539_20955	PF00902	Sec-independent protein translocase protein (TatC)
AL539_20970	PF01026	TatD related DNase
AL539_20980	PF00490	Delta-aminolevulinic acid dehydratase
AL539_20985	PF00583	Acetyltransferase (GNAT) family
AL539_20995	PF00476	DNA polymerase family A
AL539_20995	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL539_20995	PF01612	3'-5' exonuclease
AL539_20995	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL539_21000	PF01926	50S ribosome-binding GTPase
AL539_21005	PF00034	Cytochrome c
AL539_21015	PF13489	Methyltransferase domain
AL539_21020	PF04220	AL539_21020
AL539_21025	PF10675	AL539_21025
AL539_21030	PF04055	Radical SAM superfamily
AL539_21030	PF06969	HemN C-terminal domain
AL539_21035	PF00962	Adenosine/AMP deaminase
AL539_21040	PF00563	EAL domain
AL539_21040	PF00990	GGDEF domain
AL539_21040	PF02743	Cache domain
AL539_21045	PF00072	Response regulator receiver domain
AL539_21045	PF00158	Sigma-54 interaction domain
AL539_21045	PF02954	Bacterial regulatory protein, Fis family
AL539_21050	PF00512	His Kinase A (phospho-acceptor) domain
AL539_21050	PF00989	PAS fold
AL539_21050	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_21055	PF13511	AL539_21055
AL539_21060	PF00120	Glutamine synthetase, catalytic domain
AL539_21060	PF03951	Glutamine synthetase, beta-Grasp domain
AL539_21065	PF00009	Elongation factor Tu GTP binding domain
AL539_21065	PF00679	Elongation factor G C-terminus
AL539_21065	PF03144	Elongation factor Tu domain 2
AL539_21070	PF13521	AAA domain
AL539_21075	PF11172	AL539_21075
AL539_21080	PF03631	AL539_21080
AL539_21085	PF02580	D-Tyr-tRNA(Tyr) deacylase
AL539_21090	PF09500	Putative thioesterase (yiiD_Cterm)
AL539_21090	PF13673	Acetyltransferase (GNAT) domain
AL539_21095	PF05170	AL539_21095
AL539_21100	PF01293	Phosphoenolpyruvate carboxykinase
AL539_21105	PF01430	Hsp33 protein
AL539_21110	PF01479	S4 domain
AL539_21115	PF11356	Type IV pilus biogenesis
AL539_21120	PF00263	AL539_21120
AL539_21120	PF03958	Bacterial type II/III secretion system short domain
AL539_21125	PF00437	Type II/IV secretion system protein
AL539_21130	PF00482	Type II secretion system (T2SS), protein F
AL539_21135	PF07963	Prokaryotic N-terminal methylation motif
AL539_21135	PF08334	Type II secretion system (T2SS), protein G
AL539_21140	PF07963	Prokaryotic N-terminal methylation motif
AL539_21140	PF12019	Type II transport protein GspH
AL539_21145	PF02501	Type II secretion system (T2SS), protein I
AL539_21150	PF07963	Prokaryotic N-terminal methylation motif
AL539_21150	PF11612	Type II secretion system (T2SS), protein J
AL539_21155	PF03934	Type II secretion system (T2SS), protein K
AL539_21160	PF05134	Type II secretion system (T2SS), protein L
AL539_21160	PF12693	GspL periplasmic domain
AL539_21165	PF04612	Type II secretion system (T2SS), protein M
AL539_21170	PF01203	AL539_21170
AL539_21175	PF00459	Inositol monophosphatase family
AL539_21180	PF00293	NUDIX domain
AL539_21185	PF01106	NifU-like domain
AL539_21185	PF01521	Iron-sulphur cluster biosynthesis
AL539_21190	PF00156	Phosphoribosyl transferase domain
AL539_21195	PF00561	alpha/beta hydrolase fold
AL539_21205	PF00575	S1 RNA binding domain
AL539_21205	PF09371	Tex-like protein N-terminal domain
AL539_21205	PF12836	Helix-hairpin-helix motif
AL539_21205	PF16921	AL539_21205
AL539_21210	PF05618	Putative ATP-dependant zinc protease
AL539_21215	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL539_21215	PF03449	Transcription elongation factor, N-terminal
AL539_21220	PF06476	AL539_21220
AL539_21225	PF00072	Response regulator receiver domain
AL539_21225	PF00486	Transcriptional regulatory protein, C terminal
AL539_21230	PF00512	His Kinase A (phospho-acceptor) domain
AL539_21230	PF00672	HAMP domain
AL539_21230	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_21235	PF00860	Permease family
AL539_21240	PF00270	DEAD/DEAH box helicase
AL539_21240	PF00271	Helicase conserved C-terminal domain
AL539_21240	PF17191	AL539_21240
AL539_21245	PF00588	SpoU rRNA Methylase family
AL539_21245	PF12105	SpoU, rRNA methylase, C-terminal
AL539_21250	PF02824	TGS domain
AL539_21250	PF04607	Region found in RelA / SpoT proteins
AL539_21250	PF13291	ACT domain
AL539_21250	PF13328	HD domain
AL539_21255	PF01192	RNA polymerase Rpb6
AL539_21260	PF00625	Guanylate kinase
AL539_21270	PF13181	Tetratricopeptide repeat
AL539_21275	PF03544	Gram-negative bacterial TonB protein C-terminal
AL539_21280	PF02472	Biopolymer transport protein ExbD/TolR
AL539_21285	PF01618	AL539_21285
AL539_21290	PF01618	AL539_21290
AL539_21295	PF11932	AL539_21295
AL539_21300	PF00593	TonB dependent receptor
AL539_21300	PF07715	TonB-dependent Receptor Plug Domain
AL539_21310	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_21315	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_21320	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL539_21325	PF00005	ABC transporter
AL539_21325	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL539_21330	PF00005	ABC transporter
AL539_21335	PF06146	AL539_21335
AL539_21340	PF03755	AL539_21340
AL539_21340	PF08340	AL539_21340
AL539_21350	PF01138	3' exoribonuclease family, domain 1
AL539_21350	PF03725	3' exoribonuclease family, domain 2
AL539_21355	PF00156	Phosphoribosyl transferase domain
AL539_21360	PF03279	AL539_21360
AL539_21365	PF00440	Bacterial regulatory proteins, tetR family
AL539_21370	PF02441	Flavoprotein
AL539_21370	PF04127	DNA / pantothenate metabolism flavoprotein
AL539_21380	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_21380	PF00672	HAMP domain
AL539_21380	PF17200	AL539_21380
AL539_21385	PF04002	RadC-like JAB domain
AL539_21390	PF00830	Ribosomal L28 family
AL539_21395	PF00471	Ribosomal protein L33
AL539_21405	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL539_21405	PF06827	Zinc finger found in FPG and IleRS
AL539_21405	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
AL539_21410	PF01755	AL539_21410
AL539_21415	PF00534	Glycosyl transferases group 1
AL539_21420	PF01467	Cytidylyltransferase
AL539_21425	PF05686	AL539_21425
AL539_21430	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL539_21435	PF00534	Glycosyl transferases group 1
AL539_21435	PF13439	Glycosyltransferase Family 4
AL539_21440	PF01219	Prokaryotic diacylglycerol kinase
AL539_21445	PF06293	Lipopolysaccharide kinase (Kdo/WaaP) family
AL539_21450	PF16363	AL539_21450
AL539_21455	PF00483	Nucleotidyl transferase
AL539_21460	PF04321	RmlD substrate binding domain
AL539_21465	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
AL539_21470	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AL539_21485	PF00535	Glycosyl transferase family 2
AL539_21490	PF00534	Glycosyl transferases group 1
AL539_21490	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
AL539_21495	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL539_21500	PF03279	AL539_21500
AL539_21505	PF01370	NAD dependent epimerase/dehydratase family
AL539_21510	PF06082	AL539_21510
AL539_21515	PF06251	Capsule biosynthesis GfcC
AL539_21520	PF11102	Group 4 capsule polysaccharide formation lipoprotein gfcB
AL539_21530	PF13505	Outer membrane protein beta-barrel domain
AL539_21535	PF02563	Polysaccharide biosynthesis/export protein
AL539_21535	PF06251	Capsule biosynthesis GfcC
AL539_21535	PF10531	SLBB domain
AL539_21540	PF02706	Chain length determinant protein
AL539_21540	PF13807	AL539_21540
AL539_21545	PF16363	AL539_21545
AL539_21550	PF00483	Nucleotidyl transferase
AL539_21555	PF04321	RmlD substrate binding domain
AL539_21560	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
AL539_21565	PF01467	Cytidylyltransferase
AL539_21570	PF01943	AL539_21570
AL539_21575	PF04464	CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
AL539_21590	PF00535	Glycosyl transferase family 2
AL539_21595	PF00534	Glycosyl transferases group 1
AL539_21600	PF02397	AL539_21600
AL539_21605	PF00132	Bacterial transferase hexapeptide (six repeats)
AL539_21605	PF14602	Hexapeptide repeat of succinyl-transferase
AL539_21610	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AL539_21615	PF02719	Polysaccharide biosynthesis protein
AL539_21615	PF13727	CoA-binding domain
AL539_21620	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AL539_21620	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AL539_21620	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AL539_21625	PF00753	Metallo-beta-lactamase superfamily
AL539_21625	PF07521	RNA-metabolising metallo-beta-lactamase
AL539_21625	PF10996	Beta-Casp domain
AL539_21630	PF01609	Transposase DDE domain
AL539_21630	PF14104	AL539_21630
AL539_21635	PF00121	Triosephosphate isomerase
AL539_21640	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
AL539_21645	PF05656	AL539_21645
AL539_21650	PF11333	AL539_21650
AL539_21655	PF13412	Winged helix-turn-helix DNA-binding
AL539_21660	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
AL539_21665	PF06005	Protein of unknown function (DUF904)
AL539_21670	PF03737	Demethylmenaquinone methyltransferase
AL539_21675	PF01040	UbiA prenyltransferase family
AL539_21685	PF11726	AL539_21685
AL539_21695	PF13280	AL539_21695
AL539_21700	PF10980	Protein of unknown function (DUF2787)
AL539_21705	PF04002	RadC-like JAB domain
AL539_21715	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_21715	PF07724	AAA domain (Cdc48 subfamily)
AL539_21720	PF00227	Proteasome subunit
AL539_21725	PF05036	Sporulation related domain
AL539_21730	PF00356	Bacterial regulatory proteins, lacI family
AL539_21730	PF13377	Periplasmic binding protein-like domain
AL539_21735	PF00270	DEAD/DEAH box helicase
AL539_21735	PF00271	Helicase conserved C-terminal domain
AL539_21745	PF01197	Ribosomal protein L31
AL539_21750	PF00338	Ribosomal protein S10p/S20e
AL539_21755	PF00297	Ribosomal protein L3
AL539_21760	PF00573	Ribosomal protein L4/L1 family
AL539_21765	PF00276	Ribosomal protein L23
AL539_21770	PF00181	Ribosomal Proteins L2, RNA binding domain
AL539_21770	PF03947	Ribosomal Proteins L2, C-terminal domain
AL539_21775	PF00203	Ribosomal protein S19
AL539_21780	PF00237	Ribosomal protein L22p/L17e
AL539_21785	PF00189	Ribosomal protein S3, C-terminal domain
AL539_21785	PF07650	KH domain
AL539_21790	PF00252	Ribosomal protein L16p/L10e
AL539_21795	PF00831	Ribosomal L29 protein
AL539_21800	PF00366	Ribosomal protein S17
AL539_21805	PF00238	Ribosomal protein L14p/L23e
AL539_21810	PF00467	KOW motif
AL539_21810	PF17136	AL539_21810
AL539_21815	PF00281	Ribosomal protein L5
AL539_21815	PF00673	ribosomal L5P family C-terminus
AL539_21820	PF00253	Ribosomal protein S14p/S29e
AL539_21825	PF00410	Ribosomal protein S8
AL539_21830	PF00347	Ribosomal protein L6
AL539_21835	PF00861	Ribosomal L18p/L5e family
AL539_21840	PF00333	Ribosomal protein S5, N-terminal domain
AL539_21840	PF03719	Ribosomal protein S5, C-terminal domain
AL539_21845	PF00327	Ribosomal protein L30p/L7e
AL539_21850	PF00828	Ribosomal protein L18e/L15
AL539_21855	PF00344	SecY translocase
AL539_21860	PF00444	Ribosomal protein L36
AL539_21865	PF00416	Ribosomal protein S13/S18
AL539_21870	PF00411	Ribosomal protein S11
AL539_21875	PF00163	Ribosomal protein S4/S9 N-terminal domain
AL539_21875	PF01479	S4 domain
AL539_21880	PF01000	RNA polymerase Rpb3/RpoA insert domain
AL539_21880	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
AL539_21880	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
AL539_21885	PF01196	Ribosomal protein L17
AL539_21890	PF11075	AL539_21890
AL539_21895	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_21895	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL539_21900	PF04225	Opacity-associated protein A LysM-like domain
AL539_21900	PF08525	AL539_21900
AL539_21905	PF13673	Acetyltransferase (GNAT) domain
AL539_21910	PF00270	DEAD/DEAH box helicase
AL539_21910	PF00271	Helicase conserved C-terminal domain
AL539_21910	PF03880	DbpA RNA binding domain
AL539_21915	PF00027	Cyclic nucleotide-binding domain
AL539_21920	PF00149	Calcineurin-like phosphoesterase
AL539_21920	PF02872	5'-nucleotidase, C-terminal domain
AL539_21925	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL539_21930	PF01507	Phosphoadenosine phosphosulfate reductase family
AL539_21935	PF00009	Elongation factor Tu GTP binding domain
AL539_21940	PF02080	TrkA-C domain
AL539_21940	PF03600	Citrate transporter
AL539_21945	PF01583	Adenylylsulphate kinase
AL539_21950	PF10987	AL539_21950
AL539_21955	PF11736	Protein of unknown function (DUF3299)
AL539_21960	PF02687	AL539_21960
AL539_21960	PF12704	MacB-like periplasmic core domain
AL539_21965	PF00005	ABC transporter
AL539_21970	PF10986	AL539_21970
AL539_21975	PF10795	AL539_21975
AL539_21980	PF09695	AL539_21980
AL539_21985	PF06526	Protein of unknown function (DUF1107)
AL539_21990	PF01625	Peptide methionine sulfoxide reductase
AL539_21995	PF01103	Surface antigen
AL539_21995	PF07244	Surface antigen variable number repeat
AL539_21995	PF17243	AL539_21995
AL539_22000	PF04357	AL539_22000
AL539_22005	PF06094	AIG2-like family
AL539_22010	PF10973	AL539_22010
AL539_22015	PF13737	AL539_22015
AL539_22025	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_22040	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL539_22045	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_22060	PF00719	Inorganic pyrophosphatase
AL539_22065	PF00316	Fructose-1-6-bisphosphatase
AL539_22075	PF01225	Mur ligase family, catalytic domain
AL539_22075	PF02875	Mur ligase family, glutamate ligase domain
AL539_22075	PF08245	Mur ligase middle domain
AL539_22080	PF02441	Flavoprotein
AL539_22085	PF13343	Bacterial extracellular solute-binding protein
AL539_22090	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_22095	PF00005	ABC transporter
AL539_22100	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_22100	PF03466	LysR substrate binding domain
AL539_22105	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL539_22110	PF00582	Universal stress protein family
AL539_22115	PF06808	AL539_22115
AL539_22115	PF11874	AL539_22115
AL539_22125	PF16868	AL539_22125
AL539_22135	PF01316	Arginine repressor, DNA binding domain
AL539_22135	PF02863	Arginine repressor, C-terminal domain
AL539_22140	PF00056	lactate/malate dehydrogenase, NAD binding domain
AL539_22140	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AL539_22150	PF00348	Polyprenyl synthetase
AL539_22155	PF00829	Ribosomal prokaryotic L21 protein
AL539_22160	PF01016	Ribosomal L27 protein
AL539_22165	PF01018	GTP1/OBG
AL539_22165	PF01926	50S ribosome-binding GTPase
AL539_22170	PF06738	AL539_22170
AL539_22175	PF12821	AL539_22175
AL539_22180	PF00186	Dihydrofolate reductase
AL539_22185	PF00149	Calcineurin-like phosphoesterase
AL539_22190	PF04379	Protein of unknown function (DUF525)
AL539_22195	PF00398	Ribosomal RNA adenine dimethylase
AL539_22200	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
AL539_22205	PF09312	SurA N-terminal domain
AL539_22205	PF13616	PPIC-type PPIASE domain
AL539_22210	PF03968	OstA-like protein
AL539_22210	PF04453	Organic solvent tolerance protein
AL539_22215	PF00226	DnaJ domain
AL539_22215	PF05099	Tellurite resistance protein TerB
AL539_22220	PF04784	AL539_22220
AL539_22225	PF00694	Aconitase C-terminal domain
AL539_22230	PF00330	Aconitase family (aconitate hydratase)
AL539_22235	PF00180	Isocitrate/isopropylmalate dehydrogenase
AL539_22240	PF00682	HMGL-like
AL539_22240	PF08502	LeuA allosteric (dimerisation) domain
AL539_22250	PF08239	Bacterial SH3 domain
AL539_22255	PF01569	PAP2 superfamily
AL539_22260	PF13528	Glycosyl transferase family 1
AL539_22265	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_22265	PF03466	LysR substrate binding domain
AL539_22270	PF00501	AMP-binding enzyme
AL539_22275	PF00205	Thiamine pyrophosphate enzyme, central domain
AL539_22275	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL539_22275	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL539_22280	PF10369	Small subunit of acetolactate synthase
AL539_22280	PF13710	ACT domain
AL539_22285	PF00990	GGDEF domain
AL539_22285	PF02743	Cache domain
AL539_22285	PF13426	PAS domain
AL539_22290	PF00392	Bacterial regulatory proteins, gntR family
AL539_22295	PF00224	Pyruvate kinase, barrel domain
AL539_22295	PF02887	Pyruvate kinase, alpha/beta domain
AL539_22300	PF00455	AL539_22300
AL539_22300	PF08220	DeoR-like helix-turn-helix domain
AL539_22305	PF01380	SIS domain
AL539_22305	PF13522	Glutamine amidotransferase domain
AL539_22310	PF08721	TnsA endonuclease C terminal
AL539_22310	PF08722	TnsA endonuclease N terminal
AL539_22315	PF00665	Integrase core domain
AL539_22315	PF09299	Mu transposase, C-terminal
AL539_22320	PF13401	AAA domain
AL539_22325	PF06527	AL539_22325
AL539_22325	PF15978	AL539_22325
AL539_22335	PF02384	N-6 DNA Methylase
AL539_22335	PF12161	HsdM N-terminal domain
AL539_22340	PF01420	Type I restriction modification DNA specificity domain
AL539_22345	PF00271	Helicase conserved C-terminal domain
AL539_22345	PF04851	Type III restriction enzyme, res subunit
AL539_22345	PF08463	AL539_22345
AL539_22345	PF13643	AL539_22345
AL539_22350	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
AL539_22360	PF00465	Iron-containing alcohol dehydrogenase
AL539_22365	PF02733	Dak1 domain
AL539_22370	PF02734	DAK2 domain
AL539_22375	PF00381	PTS HPr component phosphorylation site
AL539_22375	PF00391	PEP-utilising enzyme, mobile domain
AL539_22375	PF02896	PEP-utilising enzyme, TIM barrel domain
AL539_22375	PF03610	PTS system fructose IIA component
AL539_22375	PF05524	PEP-utilising enzyme, N-terminal
AL539_22380	PF00158	Sigma-54 interaction domain
AL539_22380	PF00989	PAS fold
AL539_22380	PF02954	Bacterial regulatory protein, Fis family
AL539_22385	PF05068	Mannitol repressor
AL539_22390	PF01232	Mannitol dehydrogenase Rossmann domain
AL539_22390	PF08125	Mannitol dehydrogenase C-terminal domain
AL539_22395	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL539_22395	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL539_22395	PF02378	Phosphotransferase system, EIIC
AL539_22400	PF13444	Acetyltransferase (GNAT) domain
AL539_22405	PF04402	Protein of unknown function (DUF541)
AL539_22415	PF03180	NLPA lipoprotein
AL539_22420	PF00589	Phage integrase family
AL539_22420	PF13356	Domain of unknown function (DUF4102)
AL539_22435	PF00313	'Cold-shock' DNA-binding domain
AL539_22450	PF00313	'Cold-shock' DNA-binding domain
AL539_22460	PF07804	HipA-like C-terminal domain
AL539_22460	PF13657	HipA N-terminal domain
AL539_22475	PF12728	Helix-turn-helix domain
AL539_22480	PF01396	AL539_22480
AL539_22480	PF04471	Restriction endonuclease
AL539_22485	PF13175	AAA ATPase domain
AL539_22490	PF13245	Part of AAA domain
AL539_22490	PF13361	UvrD-like helicase C-terminal domain
AL539_22500	PF14350	AL539_22500
AL539_22510	PF07804	HipA-like C-terminal domain
AL539_22510	PF13657	HipA N-terminal domain
AL539_22515	PF01381	Helix-turn-helix
AL539_22525	PF00140	Sigma-70 factor, region 1
AL539_22525	PF03979	Sigma-70 factor, region 1
AL539_22525	PF04539	Sigma-70 region 3
AL539_22525	PF04542	Sigma-70 region 2
AL539_22525	PF04545	Sigma-70, region 4
AL539_22525	PF04546	Sigma-70, non-essential region
AL539_22530	PF01807	CHC2 zinc finger
AL539_22530	PF08275	DNA primase catalytic core, N-terminal domain
AL539_22530	PF08278	DNA primase DnaG DnaB-binding
AL539_22530	PF10410	DnaB-helicase binding domain of primase
AL539_22530	PF13155	Toprim-like
AL539_22535	PF09424	Yqey-like protein
AL539_22540	PF01165	Ribosomal protein S21
AL539_22545	PF00814	Glycoprotease family
AL539_22550	PF00561	alpha/beta hydrolase fold
AL539_22555	PF02660	AL539_22555
AL539_22560	PF02152	Dihydroneopterin aldolase
AL539_22565	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL539_22570	PF02673	AL539_22570
AL539_22575	PF01743	Poly A polymerase head domain
AL539_22575	PF01966	HD domain
AL539_22575	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL539_22580	PF01471	Putative peptidoglycan binding domain
AL539_22580	PF13401	AAA domain
AL539_22585	PF16537	AL539_22585
AL539_22590	PF01019	Gamma-glutamyltranspeptidase
AL539_22595	PF08239	Bacterial SH3 domain
AL539_22600	PF01384	AL539_22600
AL539_22605	PF01865	Protein of unknown function DUF47
AL539_22610	PF01928	CYTH domain
AL539_22610	PF05235	CHAD domain
AL539_22615	PF07885	Ion channel
AL539_22620	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_22625	PF03710	Glutamate-ammonia ligase adenylyltransferase
AL539_22625	PF08335	GlnD PII-uridylyltransferase
AL539_22630	PF00294	pfkB family carbohydrate kinase
AL539_22630	PF01467	Cytidylyltransferase
AL539_22635	PF02321	Outer membrane efflux protein
AL539_22640	PF00293	NUDIX domain
AL539_22645	PF06853	AL539_22645
AL539_22650	PF00149	Calcineurin-like phosphoesterase
AL539_22655	PF05728	Uncharacterised protein family (UPF0227)
AL539_22660	PF00204	DNA gyrase B
AL539_22660	PF00986	DNA gyrase B subunit, carboxyl terminus
AL539_22660	PF01751	Toprim domain
AL539_22660	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_22665	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL539_22665	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL539_22670	PF13180	PDZ domain
AL539_22670	PF13365	Trypsin-like peptidase domain
AL539_22675	PF00595	PDZ domain (Also known as DHR or GLGF)
AL539_22675	PF13180	PDZ domain
AL539_22675	PF13365	Trypsin-like peptidase domain
AL539_22680	PF06295	AL539_22680
AL539_22690	PF03969	AFG1-like ATPase
AL539_22700	PF00572	Ribosomal protein L13
AL539_22705	PF00380	Ribosomal protein S9/S16
AL539_22710	PF00355	Rieske [2Fe-2S] domain
AL539_22710	PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
AL539_22715	PF00032	Cytochrome b(C-terminal)/b6/petD
AL539_22715	PF00033	Cytochrome b(N-terminal)/b6/petB
AL539_22720	PF02167	Cytochrome C1 family
AL539_22725	PF00043	Glutathione S-transferase, C-terminal domain
AL539_22725	PF13417	Glutathione S-transferase, N-terminal domain
AL539_22730	PF04386	Stringent starvation protein B
AL539_22735	PF04972	BON domain
AL539_22740	PF13580	SIS domain
AL539_22745	PF02021	Uncharacterised protein family UPF0102
AL539_22750	PF04348	LppC putative lipoprotein
AL539_22755	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL539_22770	PF01795	MraW methylase family
AL539_22775	PF04999	AL539_22775
AL539_22780	PF00905	Penicillin binding protein transpeptidase domain
AL539_22780	PF03717	Penicillin-binding Protein dimerisation domain
AL539_22785	PF01225	Mur ligase family, catalytic domain
AL539_22785	PF02875	Mur ligase family, glutamate ligase domain
AL539_22785	PF08245	Mur ligase middle domain
AL539_22790	PF01225	Mur ligase family, catalytic domain
AL539_22790	PF02875	Mur ligase family, glutamate ligase domain
AL539_22790	PF08245	Mur ligase middle domain
AL539_22795	PF00953	Glycosyl transferase family 4
AL539_22795	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
AL539_22800	PF02875	Mur ligase family, glutamate ligase domain
AL539_22800	PF08245	Mur ligase middle domain
AL539_22805	PF01098	AL539_22805
AL539_22810	PF03033	Glycosyltransferase family 28 N-terminal domain
AL539_22810	PF04101	Glycosyltransferase family 28 C-terminal domain
AL539_22815	PF01225	Mur ligase family, catalytic domain
AL539_22815	PF02875	Mur ligase family, glutamate ligase domain
AL539_22815	PF08245	Mur ligase middle domain
AL539_22820	PF03799	Cell division protein FtsQ
AL539_22820	PF08478	POTRA domain, FtsQ-type
AL539_22825	PF02491	SHS2 domain inserted in FTSA
AL539_22825	PF14450	Cell division protein FtsA
AL539_22830	PF00091	Tubulin/FtsZ family, GTPase domain
AL539_22830	PF12327	FtsZ family, C-terminal domain
AL539_22835	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
AL539_22840	PF05258	AL539_22840
AL539_22845	PF01043	SecA preprotein cross-linking domain
AL539_22845	PF02810	SEC-C motif
AL539_22845	PF07516	SecA Wing and Scaffold domain
AL539_22845	PF07517	SecA DEAD-like domain
AL539_22850	PF00293	NUDIX domain
AL539_22855	PF01113	Dihydrodipicolinate reductase, N-terminus
AL539_22855	PF05173	Dihydrodipicolinate reductase, C-terminus
AL539_22860	PF00117	Glutamine amidotransferase class-I
AL539_22860	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AL539_22865	PF02142	MGS-like domain
AL539_22865	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL539_22865	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL539_22880	PF01925	AL539_22880
AL539_22885	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_22885	PF03466	LysR substrate binding domain
AL539_22890	PF03458	AL539_22890
AL539_22895	PF01497	Periplasmic binding protein
AL539_22900	PF03186	AL539_22900
AL539_22905	PF01048	Phosphorylase superfamily
AL539_22910	PF07386	AL539_22910
AL539_22915	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_22915	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL539_22920	PF00310	Glutamine amidotransferases class-II
AL539_22920	PF01493	GXGXG motif
AL539_22920	PF01645	Conserved region in glutamate synthase
AL539_22920	PF04898	Glutamate synthase central domain
AL539_22925	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_22925	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL539_22930	PF00310	Glutamine amidotransferases class-II
AL539_22930	PF01493	GXGXG motif
AL539_22930	PF01645	Conserved region in glutamate synthase
AL539_22930	PF04898	Glutamate synthase central domain
AL539_22935	PF04055	Radical SAM superfamily
AL539_22935	PF16199	AL539_22935
AL539_22940	PF00990	GGDEF domain
AL539_22940	PF08448	PAS fold
AL539_22940	PF13188	PAS domain
AL539_22945	PF00072	Response regulator receiver domain
AL539_22945	PF00512	His Kinase A (phospho-acceptor) domain
AL539_22945	PF01627	Hpt domain
AL539_22945	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_22945	PF08448	PAS fold
AL539_22955	PF00072	Response regulator receiver domain
AL539_22955	PF00486	Transcriptional regulatory protein, C terminal
AL539_22965	PF11697	AL539_22965
AL539_22970	PF03737	Demethylmenaquinone methyltransferase
AL539_22985	PF00696	Amino acid kinase family
AL539_22985	PF00742	Homoserine dehydrogenase
AL539_22985	PF01842	ACT domain
AL539_22985	PF03447	Homoserine dehydrogenase, NAD binding domain
AL539_22985	PF13840	ACT domain
AL539_22990	PF00288	GHMP kinases N terminal domain
AL539_22990	PF08544	GHMP kinases C terminal
AL539_22995	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_22995	PF14821	Threonine synthase N terminus
AL539_23000	PF03358	NADPH-dependent FMN reductase
AL539_23005	PF01228	Glycine radical
AL539_23010	PF01261	Xylose isomerase-like TIM barrel
AL539_23020	PF03167	Uracil DNA glycosylase superfamily
AL539_23025	PF01814	Hemerythrin HHE cation binding domain
AL539_23030	PF12065	AL539_23030
AL539_23035	PF01235	AL539_23035
AL539_23040	PF03883	AL539_23040
AL539_23045	PF00270	DEAD/DEAH box helicase
AL539_23045	PF00271	Helicase conserved C-terminal domain
AL539_23050	PF05175	Methyltransferase small domain
AL539_23055	PF05525	AL539_23055
AL539_23060	PF00258	Flavodoxin
AL539_23065	PF00589	Phage integrase family
AL539_23065	PF02899	Phage integrase, N-terminal SAM-like domain
AL539_23070	PF10411	Disulfide bond isomerase protein N-terminus
AL539_23070	PF13098	Thioredoxin-like domain
AL539_23075	PF01368	DHH family
AL539_23075	PF02272	DHHA1 domain
AL539_23085	PF00152	tRNA synthetases class II (D, K and N)
AL539_23085	PF01336	OB-fold nucleic acid binding domain
AL539_23090	PF00158	Sigma-54 interaction domain
AL539_23090	PF02954	Bacterial regulatory protein, Fis family
AL539_23100	PF00248	Aldo/keto reductase family
AL539_23110	PF02976	DNA mismatch repair enzyme MutH
AL539_23115	PF00293	NUDIX domain
AL539_23120	PF00391	PEP-utilising enzyme, mobile domain
AL539_23120	PF01590	GAF domain
AL539_23120	PF02896	PEP-utilising enzyme, TIM barrel domain
AL539_23120	PF05524	PEP-utilising enzyme, N-terminal
AL539_23125	PF01925	AL539_23125
AL539_23130	PF01790	AL539_23130
AL539_23135	PF00303	Thymidylate synthase
AL539_23140	PF08014	AL539_23140
AL539_23145	PF02690	AL539_23145
AL539_23150	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_23150	PF03466	LysR substrate binding domain
AL539_23155	PF01022	Bacterial regulatory protein, arsR family
AL539_23160	PF01649	Ribosomal protein S20
AL539_23165	PF03023	AL539_23165
AL539_23170	PF01687	Riboflavin kinase
AL539_23170	PF06574	FAD synthetase
AL539_23175	PF00133	tRNA synthetases class I (I, L, M and V)
AL539_23175	PF06827	Zinc finger found in FPG and IleRS
AL539_23175	PF08264	Anticodon-binding domain of tRNA
AL539_23180	PF01252	AL539_23180
AL539_23185	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_23190	PF02401	LytB protein
AL539_23195	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL539_23200	PF00072	Response regulator receiver domain
AL539_23200	PF04397	LytTr DNA-binding domain
AL539_23205	PF06580	AL539_23205
AL539_23205	PF07694	5TMR of 5TMR-LYT
AL539_23205	PF13492	GAF domain
AL539_23210	PF02554	AL539_23210
AL539_23210	PF13722	AL539_23210
AL539_23215	PF10973	AL539_23215
AL539_23225	PF13580	SIS domain
AL539_23230	PF03702	Uncharacterised protein family (UPF0075)
AL539_23235	PF00933	Glycosyl hydrolase family 3 N terminal domain
AL539_23240	PF00793	DAHP synthetase I family
AL539_23245	PF01817	Chorismate mutase type II
AL539_23245	PF02153	Prephenate dehydrogenase
AL539_23250	PF01551	Peptidase family M23
AL539_23255	PF07238	PilZ domain
AL539_23260	PF00005	ABC transporter
AL539_23260	PF12848	ABC transporter
AL539_23265	PF01464	Transglycosylase SLT domain
AL539_23265	PF14718	Soluble lytic murein transglycosylase L domain
AL539_23270	PF01371	Trp repressor protein
AL539_23275	PF01931	Protein of unknown function DUF84
AL539_23280	PF00800	Prephenate dehydratase
AL539_23280	PF01817	Chorismate mutase type II
AL539_23285	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL539_23290	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_23290	PF01464	Transglycosylase SLT domain
AL539_23295	PF13525	Outer membrane lipoprotein
AL539_23300	PF00849	RNA pseudouridylate synthase
AL539_23300	PF01479	S4 domain
AL539_23305	PF02578	Multi-copper polyphenol oxidoreductase laccase
AL539_23310	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_23310	PF02861	Clp amino terminal domain
AL539_23310	PF07724	AAA domain (Cdc48 subfamily)
AL539_23310	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_23355	PF08921	Domain of unknown function (DUF1904)
AL539_23360	PF03411	Penicillin-insensitive murein endopeptidase
AL539_23375	PF00037	4Fe-4S binding domain
AL539_23380	PF01136	AL539_23380
AL539_23380	PF16325	AL539_23380
AL539_23385	PF04381	Putative exonuclease, RdgC
AL539_23395	PF00072	Response regulator receiver domain
AL539_23395	PF00486	Transcriptional regulatory protein, C terminal
AL539_23400	PF00512	His Kinase A (phospho-acceptor) domain
AL539_23400	PF00989	PAS fold
AL539_23400	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_23400	PF11808	AL539_23400
AL539_23405	PF12849	PBP superfamily domain
AL539_23410	PF02541	Ppx/GppA phosphatase family
AL539_23415	PF02503	Polyphosphate kinase middle domain
AL539_23415	PF13089	Polyphosphate kinase N-terminal domain
AL539_23415	PF13090	Polyphosphate kinase C-terminal domain
AL539_23420	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_23425	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_23430	PF00005	ABC transporter
AL539_23435	PF01895	PhoU domain
AL539_23440	PF03976	Polyphosphate kinase 2 (PPK2)
AL539_23445	PF03932	CutC family
AL539_23450	PF00578	AhpC/TSA family
AL539_23450	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AL539_23455	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_23455	PF03466	LysR substrate binding domain
AL539_23460	PF01274	Malate synthase
AL539_23465	PF00463	Isocitrate lyase family
AL539_23470	PF00571	CBS domain
AL539_23475	PF00089	Trypsin
AL539_23480	PF02547	Queuosine biosynthesis protein
AL539_23485	PF01702	Queuine tRNA-ribosyltransferase
AL539_23490	PF02699	Preprotein translocase subunit
AL539_23495	PF02355	Protein export membrane protein
AL539_23495	PF07549	SecD/SecF GG Motif
AL539_23495	PF13721	SecD export protein N-terminal TM region
AL539_23500	PF02355	Protein export membrane protein
AL539_23500	PF07549	SecD/SecF GG Motif
AL539_23515	PF00459	Inositol monophosphatase family
AL539_23520	PF00588	SpoU rRNA Methylase family
AL539_23525	PF02082	Transcriptional regulator
AL539_23530	PF00266	Aminotransferase class-V
AL539_23535	PF01592	NifU-like N terminal domain
AL539_23540	PF01521	Iron-sulphur cluster biosynthesis
AL539_23545	PF00226	DnaJ domain
AL539_23545	PF07743	HSCB C-terminal oligomerisation domain
AL539_23550	PF00012	Hsp70 protein
AL539_23555	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL539_23560	PF04384	Iron-sulphur cluster assembly
AL539_23565	PF00883	Cytosol aminopeptidase family, catalytic domain
AL539_23565	PF12404	AL539_23565
AL539_23570	PF00334	Nucleoside diphosphate kinase
AL539_23575	PF04055	Radical SAM superfamily
AL539_23580	PF13413	Helix-turn-helix domain
AL539_23580	PF13464	AL539_23580
AL539_23585	PF04551	GcpE protein
AL539_23590	PF03129	Anticodon binding domain
AL539_23590	PF13393	Histidyl-tRNA synthetase
AL539_23595	PF09976	Tetratricopeptide repeat
AL539_23600	PF13360	PQQ-like domain
AL539_23605	PF01926	50S ribosome-binding GTPase
AL539_23605	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
AL539_23615	PF07191	zinc-ribbons
AL539_23620	PF02601	AL539_23620
AL539_23620	PF13742	AL539_23620
AL539_23625	PF00478	IMP dehydrogenase / GMP reductase domain
AL539_23625	PF00571	CBS domain
AL539_23630	PF00117	Glutamine amidotransferase class-I
AL539_23630	PF00958	GMP synthase C terminal domain
AL539_23630	PF02540	NAD synthase
AL539_23635	PF03553	AL539_23635
AL539_23640	PF00182	Chitinase class I
AL539_23645	PF01184	AL539_23645
AL539_23650	PF01235	AL539_23650
AL539_23655	PF01266	FAD dependent oxidoreductase
AL539_23660	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_23660	PF03466	LysR substrate binding domain
AL539_23665	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL539_23670	PF00202	Aminotransferase class-III
AL539_23675	PF05853	Prokaryotic protein of unknown function (DUF849)
AL539_23680	PF03553	AL539_23680
AL539_23685	PF09335	AL539_23685
AL539_23690	PF00583	Acetyltransferase (GNAT) family
AL539_23690	PF00795	Carbon-nitrogen hydrolase
AL539_23695	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_23695	PF03466	LysR substrate binding domain
AL539_23700	PF13505	Outer membrane protein beta-barrel domain
AL539_23705	PF01764	Lipase (class 3)
AL539_23715	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
AL539_23720	PF09952	AL539_23720
AL539_23725	PF00149	Calcineurin-like phosphoesterase
AL539_23735	PF11140	AL539_23735
AL539_23740	PF00563	EAL domain
AL539_23745	PF00563	EAL domain
AL539_23745	PF00990	GGDEF domain
AL539_23750	PF12833	Helix-turn-helix domain
AL539_23755	PF00563	EAL domain
AL539_23765	PF13276	AL539_23765
AL539_23770	PF00665	Integrase core domain
AL539_23775	PF00990	GGDEF domain
AL539_23780	PF01381	Helix-turn-helix
AL539_23780	PF07883	Cupin domain
AL539_23785	PF03483	B3/4 domain
AL539_23795	PF00589	Phage integrase family
AL539_23815	PF07804	HipA-like C-terminal domain
AL539_23815	PF13657	HipA N-terminal domain
AL539_23835	PF13737	AL539_23835
AL539_23875	PF00239	Resolvase, N terminal domain
AL539_23880	PF01863	Protein of unknown function DUF45
AL539_23885	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)
AL539_23885	PF04851	Type III restriction enzyme, res subunit
AL539_23885	PF11867	AL539_23885
AL539_23890	PF01420	Type I restriction modification DNA specificity domain
AL539_23895	PF02384	N-6 DNA Methylase
AL539_23895	PF12161	HsdM N-terminal domain
AL539_23905	PF02384	N-6 DNA Methylase
AL539_23910	PF01420	Type I restriction modification DNA specificity domain
AL539_23920	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AL539_23930	PF00589	Phage integrase family
AL539_23930	PF13356	Domain of unknown function (DUF4102)
AL539_23930	PF14659	Phage integrase, N-terminal SAM-like domain
AL539_23940	PF01668	SmpB protein
AL539_23945	PF03364	Polyketide cyclase / dehydrase and lipid transport
AL539_23950	PF03658	RnfH family Ubiquitin
AL539_23955	PF04355	SmpA / OmlA family
AL539_23960	PF00583	Acetyltransferase (GNAT) family
AL539_23965	PF02463	RecF/RecN/SMC N terminal domain
AL539_23970	PF11301	AL539_23970
AL539_23975	PF01513	ATP-NAD kinase
AL539_23980	PF01025	GrpE
AL539_23985	PF00375	Sodium:dicarboxylate symporter family
AL539_23990	PF00012	Hsp70 protein
AL539_23995	PF00226	DnaJ domain
AL539_23995	PF00684	DnaJ central domain
AL539_23995	PF01556	DnaJ C terminal domain
AL539_24000	PF07963	Prokaryotic N-terminal methylation motif
AL539_24000	PF16732	AL539_24000
AL539_24005	PF07963	Prokaryotic N-terminal methylation motif
AL539_24005	PF12019	Type II transport protein GspH
AL539_24020	PF07963	Prokaryotic N-terminal methylation motif
AL539_24025	PF03806	AL539_24025
AL539_24030	PF14437	AL539_24030
AL539_24040	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_24040	PF01464	Transglycosylase SLT domain
AL539_24045	PF02769	AIR synthase related protein, C-terminal domain
AL539_24045	PF13507	CobB/CobQ-like glutamine amidotransferase domain
AL539_24050	PF12286	AL539_24050
AL539_24060	PF00593	TonB dependent receptor
AL539_24060	PF07715	TonB-dependent Receptor Plug Domain
AL539_24065	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL539_24070	PF11810	AL539_24070
AL539_24075	PF01546	Peptidase family M20/M25/M40
AL539_24075	PF07687	Peptidase dimerisation domain
AL539_24080	PF00860	Permease family
AL539_24085	PF00156	Phosphoribosyl transferase domain
AL539_24090	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
AL539_24095	PF07417	Transcriptional regulator Crl
AL539_24100	PF00696	Amino acid kinase family
AL539_24100	PF01472	PUA domain
AL539_24105	PF00171	Aldehyde dehydrogenase family
AL539_24110	PF03477	ATP cone domain
AL539_24115	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL539_24115	PF01872	RibD C-terminal domain
AL539_24120	PF00677	Lumazine binding domain
AL539_24125	PF00925	GTP cyclohydrolase II
AL539_24125	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL539_24130	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AL539_24135	PF01029	NusB family
AL539_24140	PF00586	AIR synthase related protein, N-terminal domain
AL539_24140	PF02769	AIR synthase related protein, C-terminal domain
AL539_24145	PF04608	Phosphatidylglycerophosphatase A
AL539_24150	PF02779	Transketolase, pyrimidine binding domain
AL539_24150	PF02780	Transketolase, C-terminal domain
AL539_24150	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
AL539_24155	PF00348	Polyprenyl synthetase
AL539_24160	PF02609	Exonuclease VII small subunit
AL539_24165	PF01618	AL539_24165
AL539_24170	PF00691	OmpA family
AL539_24170	PF13677	AL539_24170
AL539_24175	PF02568	Thiamine biosynthesis protein (ThiI)
AL539_24175	PF02926	THUMP domain
AL539_24180	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_24180	PF03466	LysR substrate binding domain
AL539_24190	PF04241	AL539_24190
AL539_24195	PF01728	FtsJ-like methyltransferase
AL539_24200	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL539_24200	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL539_24205	PF03641	Possible lysine decarboxylase
AL539_24205	PF11892	Domain of unknown function (DUF3412)
AL539_24205	PF14793	Domain of unknown function (DUF4478)
AL539_24210	PF00990	GGDEF domain
AL539_24220	PF14489	QueF-like protein
AL539_24220	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
AL539_24225	PF07348	Syd protein (SUKH-2)
AL539_24230	PF10071	AL539_24230
AL539_24235	PF03180	NLPA lipoprotein
AL539_24240	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_24245	PF00005	ABC transporter
AL539_24245	PF09383	NIL domain
AL539_24250	PF13242	HAD-hyrolase-like
AL539_24255	PF00356	Bacterial regulatory proteins, lacI family
AL539_24255	PF13377	Periplasmic binding protein-like domain
AL539_24260	PF00367	phosphotransferase system, EIIB
AL539_24260	PF02378	Phosphotransferase system, EIIC
AL539_24265	PF00128	Alpha amylase, catalytic domain
AL539_24265	PF16657	AL539_24265
AL539_24275	PF00486	Transcriptional regulatory protein, C terminal
AL539_24280	PF02588	AL539_24280
AL539_24285	PF00464	Serine hydroxymethyltransferase
AL539_24290	PF04055	Radical SAM superfamily
AL539_24290	PF16881	AL539_24290
AL539_24295	PF03099	Biotin/lipoate A/B protein ligase family
AL539_24300	PF04359	Protein of unknown function (DUF493)
AL539_24305	PF00768	D-alanyl-D-alanine carboxypeptidase
AL539_24305	PF07943	Penicillin-binding protein 5, C-terminal domain
AL539_24310	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
AL539_24310	PF05036	Sporulation related domain
AL539_24315	PF01098	AL539_24315
AL539_24320	PF00905	Penicillin binding protein transpeptidase domain
AL539_24320	PF03717	Penicillin-binding Protein dimerisation domain
AL539_24325	PF02590	Predicted SPOUT methyltransferase
AL539_24330	PF02410	Oligomerisation domain
AL539_24335	PF06144	DNA polymerase III, delta subunit
AL539_24335	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
AL539_24340	PF04390	Lipopolysaccharide-assembly
AL539_24345	PF00133	tRNA synthetases class I (I, L, M and V)
AL539_24345	PF08264	Anticodon-binding domain of tRNA
AL539_24345	PF13603	Leucyl-tRNA synthetase, Domain 2
AL539_24350	PF07295	AL539_24350
AL539_24355	PF00795	Carbon-nitrogen hydrolase
AL539_24360	PF00571	CBS domain
AL539_24360	PF03471	Transporter associated domain
AL539_24365	PF02130	Uncharacterized protein family UPF0054
AL539_24370	PF02562	PhoH-like protein
AL539_24375	PF00919	Uncharacterized protein family UPF0004
AL539_24375	PF01938	TRAM domain
AL539_24375	PF04055	Radical SAM superfamily
AL539_24385	PF01494	FAD binding domain
AL539_24495	PF01926	50S ribosome-binding GTPase
AL539_24495	PF06071	Protein of unknown function (DUF933)
AL539_24500	PF01195	Peptidyl-tRNA hydrolase
AL539_24505	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AL539_24505	PF14572	Phosphoribosyl synthetase-associated domain
AL539_24510	PF00288	GHMP kinases N terminal domain
AL539_24510	PF08544	GHMP kinases C terminal
AL539_24515	PF03550	Outer membrane lipoprotein LolB
AL539_24520	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
AL539_24520	PF01488	Shikimate / quinate 5-dehydrogenase
AL539_24520	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
AL539_24525	PF00472	RF-1 domain
AL539_24525	PF03462	PCRF domain
AL539_24530	PF13847	Methyltransferase domain
AL539_24535	PF04247	AL539_24535
AL539_24540	PF13369	AL539_24540
AL539_24540	PF13371	Tetratricopeptide repeat
AL539_24545	PF00793	DAHP synthetase I family
AL539_24550	PF00149	Calcineurin-like phosphoesterase
AL539_24550	PF02872	5'-nucleotidase, C-terminal domain
AL539_24555	PF04073	Aminoacyl-tRNA editing domain
AL539_24560	PF00849	RNA pseudouridylate synthase
AL539_24560	PF01479	S4 domain
AL539_24565	PF01713	Smr domain
AL539_24570	PF11346	AL539_24570
AL539_24585	PF01963	AL539_24585
AL539_24590	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL539_24590	PF02838	Glycosyl hydrolase family 20, domain 2
AL539_24590	PF03173	Putative carbohydrate binding domain
AL539_24590	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
AL539_24595	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AL539_24600	PF04214	AL539_24600
AL539_24605	PF00122	E1-E2 ATPase
AL539_24605	PF00403	Heavy-metal-associated domain
AL539_24605	PF00702	haloacid dehalogenase-like hydrolase
AL539_24615	PF13609	Gram-negative porin
AL539_24620	PF09829	AL539_24620
AL539_24625	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL539_24630	PF00691	OmpA family
AL539_24630	PF01389	OmpA-like transmembrane domain
AL539_24645	PF16538	AL539_24645
AL539_24645	PF16539	AL539_24645
AL539_24645	PF16548	AL539_24645
AL539_24655	PF02169	LPP20 lipoprotein
AL539_24660	PF05130	FlgN protein
AL539_24665	PF04316	Anti-sigma-28 factor, FlgM
AL539_24670	PF13144	SAF-like
AL539_24675	PF00072	Response regulator receiver domain
AL539_24675	PF01584	CheW-like domain
AL539_24680	PF01739	CheR methyltransferase, SAM binding domain
AL539_24680	PF03705	CheR methyltransferase, all-alpha domain
AL539_24690	PF00460	Flagella basal body rod protein
AL539_24690	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_24695	PF03963	AL539_24695
AL539_24695	PF13860	FlgD Ig-like domain
AL539_24695	PF13861	FlgD Tudor-like domain
AL539_24700	PF00460	Flagella basal body rod protein
AL539_24700	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_24700	PF07559	Flagellar basal body protein FlaE
AL539_24705	PF00460	Flagella basal body rod protein
AL539_24705	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_24710	PF00460	Flagella basal body rod protein
AL539_24710	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_24715	PF02107	AL539_24715
AL539_24720	PF02119	AL539_24720
AL539_24725	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL539_24725	PF10135	AL539_24725
AL539_24730	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL539_24735	PF00669	Bacterial flagellin N-terminal helical region
AL539_24740	PF00669	Bacterial flagellin N-terminal helical region
AL539_24740	PF00700	Bacterial flagellin C-terminal helical region
AL539_24740	PF07196	Flagellin hook IN motif
AL539_24750	PF00669	Bacterial flagellin N-terminal helical region
AL539_24750	PF00700	Bacterial flagellin C-terminal helical region
AL539_24750	PF07196	Flagellin hook IN motif
AL539_24755	PF00669	Bacterial flagellin N-terminal helical region
AL539_24755	PF00700	Bacterial flagellin C-terminal helical region
AL539_24755	PF07196	Flagellin hook IN motif
AL539_24760	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AL539_24765	PF00391	PEP-utilising enzyme, mobile domain
AL539_24765	PF02896	PEP-utilising enzyme, TIM barrel domain
AL539_24765	PF05524	PEP-utilising enzyme, N-terminal
AL539_24770	PF00381	PTS HPr component phosphorylation site
AL539_24780	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_24785	PF07264	Etoposide-induced protein 2
AL539_24790	PF04354	ZipA, C-terminal FtsZ-binding domain
AL539_24795	PF00533	BRCA1 C Terminus (BRCT) domain
AL539_24795	PF01653	NAD-dependent DNA ligase adenylation domain
AL539_24795	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
AL539_24795	PF03120	NAD-dependent DNA ligase OB-fold domain
AL539_24795	PF12826	Helix-hairpin-helix motif
AL539_24795	PF14520	Helix-hairpin-helix domain
AL539_24810	PF01957	NfeD-like C-terminal, partner-binding
AL539_24815	PF01145	SPFH domain / Band 7 family
AL539_24815	PF16200	AL539_24815
AL539_24820	PF00085	Thioredoxin
AL539_24820	PF14559	Tetratricopeptide repeat
AL539_24820	PF14561	Tetratricopeptide repeat
AL539_24830	PF00106	short chain dehydrogenase
AL539_24835	PF01370	NAD dependent epimerase/dehydratase family
AL539_24835	PF08338	Domain of unknown function (DUF1731)
AL539_24840	PF07556	AL539_24840
AL539_24845	PF07556	AL539_24845
AL539_24855	PF00571	CBS domain
AL539_24865	PF12850	Calcineurin-like phosphoesterase superfamily domain
AL539_24870	PF10262	Rdx family
AL539_24875	PF01925	AL539_24875
AL539_24880	PF17323	AL539_24880
AL539_24885	PF00486	Transcriptional regulatory protein, C terminal
AL539_24890	PF00183	Hsp90 protein
AL539_24890	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_24895	PF00406	Adenylate kinase
AL539_24895	PF05191	Adenylate kinase, active site lid
AL539_24900	PF00762	Ferrochelatase
AL539_24905	PF00854	POT family
AL539_24910	PF02357	Transcription termination factor nusG
AL539_24915	PF00733	Asparagine synthase
AL539_24915	PF13537	Glutamine amidotransferase domain
AL539_24920	PF00999	Sodium/hydrogen exchanger family
AL539_24920	PF02254	TrkA-N domain
AL539_24925	PF00480	ROK family
AL539_24930	PF01979	Amidohydrolase family
AL539_24940	PF00367	phosphotransferase system, EIIB
AL539_24940	PF02378	Phosphotransferase system, EIIC
AL539_24945	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL539_24945	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
AL539_24950	PF01475	Ferric uptake regulator family
AL539_24955	PF14539	Domain of unknown function (DUF4442)
AL539_24960	PF00258	Flavodoxin
AL539_24965	PF10981	AL539_24965
AL539_24970	PF12697	Alpha/beta hydrolase family
AL539_24975	PF03925	SeqA protein
AL539_24975	PF17206	AL539_24975
AL539_24980	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL539_24980	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL539_24980	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL539_24980	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL539_24985	PF08907	AL539_24985
AL539_24990	PF01784	NIF3 (NGG1p interacting factor 3)
AL539_24995	PF00285	Citrate synthase
AL539_25000	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AL539_25010	PF00890	FAD binding domain
AL539_25010	PF02910	Fumarate reductase flavoprotein C-term
AL539_25015	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL539_25015	PF13534	4Fe-4S dicluster domain
AL539_25020	PF00676	Dehydrogenase E1 component
AL539_25020	PF02779	Transketolase, pyrimidine binding domain
AL539_25020	PF16078	AL539_25020
AL539_25020	PF16870	AL539_25020
AL539_25025	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL539_25025	PF00364	Biotin-requiring enzyme
AL539_25025	PF02817	e3 binding domain
AL539_25030	PF00549	CoA-ligase
AL539_25030	PF08442	ATP-grasp domain
AL539_25035	PF00549	CoA-ligase
AL539_25035	PF02629	CoA binding domain
AL539_25040	PF00950	AL539_25040
AL539_25045	PF00005	ABC transporter
AL539_25050	PF01297	Periplasmic solute binding protein family
AL539_25055	PF12833	Helix-turn-helix domain
AL539_25060	PF04023	FeoA domain
AL539_25065	PF02421	Ferrous iron transport protein B
AL539_25065	PF07664	AL539_25065
AL539_25065	PF07670	Nucleoside recognition
AL539_25070	PF09012	FeoC like transcriptional regulator
AL539_25075	PF03350	AL539_25075
AL539_25080	PF01230	HIT domain
AL539_25085	PF00750	tRNA synthetases class I (R)
AL539_25085	PF03485	Arginyl tRNA synthetase N terminal domain
AL539_25085	PF05746	DALR anticodon binding domain
AL539_25095	PF06185	YecM protein
AL539_25100	PF00551	Formyl transferase
AL539_25100	PF01842	ACT domain
AL539_25105	PF04851	Type III restriction enzyme, res subunit
AL539_25105	PF13307	Helicase C-terminal domain
AL539_25110	PF00814	Glycoprotease family
AL539_25120	PF03843	AL539_25120
AL539_25125	PF00561	alpha/beta hydrolase fold
AL539_25130	PF00501	AMP-binding enzyme
AL539_25130	PF13193	AMP-binding enzyme C-terminal domain
AL539_25135	PF00570	HRDC domain
AL539_25135	PF01612	3'-5' exonuclease
AL539_25140	PF03776	Septum formation topological specificity factor MinE
AL539_25145	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AL539_25150	PF03775	Septum formation inhibitor MinC, C-terminal domain
AL539_25150	PF05209	Septum formation inhibitor MinC, N-terminal domain
AL539_25155	PF05166	YcgL domain
AL539_25160	PF13406	Transglycosylase SLT domain
AL539_25165	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL539_25165	PF03466	LysR substrate binding domain
AL539_25170	PF01773	Na+ dependent nucleoside transporter N-terminus
AL539_25170	PF07662	Na+ dependent nucleoside transporter C-terminus
AL539_25170	PF07670	Nucleoside recognition
AL539_25175	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
AL539_25175	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
AL539_25185	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL539_25185	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL539_25190	PF13561	Enoyl-(Acyl carrier protein) reductase
AL539_25200	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL539_25200	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL539_25205	PF11659	AL539_25205
AL539_25210	PF03176	MMPL family
AL539_25215	PF03548	Outer membrane lipoprotein carrier protein LolA
AL539_25220	PF13279	Thioesterase-like superfamily
AL539_25225	PF00221	Aromatic amino acid lyase
AL539_25230	PF00535	Glycosyl transferase family 2
AL539_25230	PF03279	AL539_25230
AL539_25240	PF00501	AMP-binding enzyme
AL539_25240	PF13193	AMP-binding enzyme C-terminal domain
AL539_25245	PF04279	AL539_25245
AL539_25250	PF00550	Phosphopantetheine attachment site
AL539_25255	PF00550	Phosphopantetheine attachment site
AL539_25260	PF01553	Acyltransferase
AL539_25265	PF13723	AL539_25265
AL539_25280	PF01494	FAD binding domain
AL539_25285	PF01464	Transglycosylase SLT domain
AL539_25290	PF00270	DEAD/DEAH box helicase
AL539_25290	PF00271	Helicase conserved C-terminal domain
AL539_25295	PF02080	TrkA-C domain
AL539_25295	PF02254	TrkA-N domain
AL539_25300	PF02386	Cation transport protein
AL539_25305	PF05547	AL539_25305
AL539_25315	PF02696	AL539_25315
AL539_25320	PF03480	Bacterial extracellular solute-binding protein, family 7
AL539_25325	PF04290	AL539_25325
AL539_25330	PF06808	AL539_25330
AL539_25340	PF00072	Response regulator receiver domain
AL539_25340	PF00158	Sigma-54 interaction domain
AL539_25340	PF02954	Bacterial regulatory protein, Fis family
AL539_25345	PF00512	His Kinase A (phospho-acceptor) domain
AL539_25345	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL539_25355	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL539_25355	PF05697	Bacterial trigger factor protein (TF)
AL539_25355	PF05698	Bacterial trigger factor protein (TF) C-terminus
AL539_25360	PF00574	Clp protease
AL539_25365	PF06689	ClpX C4-type zinc finger
AL539_25365	PF07724	AAA domain (Cdc48 subfamily)
AL539_25365	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_25370	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_25370	PF02190	ATP-dependent protease La (LON) domain
AL539_25370	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL539_25375	PF00216	Bacterial DNA-binding protein
AL539_25380	PF13616	PPIC-type PPIASE domain
AL539_25380	PF13624	SurA N-terminal domain
AL539_25385	PF12836	Helix-hairpin-helix motif
AL539_25390	PF01694	Rhomboid family
AL539_25395	PF03942	AL539_25395
AL539_25400	PF01966	HD domain
AL539_25400	PF13286	Phosphohydrolase-associated domain
AL539_25405	PF13023	HD domain
AL539_25410	PF00155	Aminotransferase class I and II
AL539_25415	PF00425	chorismate binding enzyme
AL539_25420	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL539_25420	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL539_25420	PF16582	AL539_25420
AL539_25425	PF12697	Alpha/beta hydrolase family
AL539_25430	PF00378	Enoyl-CoA hydratase/isomerase family
AL539_25435	PF13378	Enolase C-terminal domain-like
AL539_25440	PF00501	AMP-binding enzyme
AL539_25450	PF03601	AL539_25450
AL539_25455	PF01553	Acyltransferase
AL539_25455	PF07690	Major Facilitator Superfamily
AL539_25460	PF13305	WHG domain
AL539_25465	PF04280	Tim44-like domain
AL539_25505	PF16576	AL539_25505
AL539_25510	PF00873	AcrB/AcrD/AcrF family
AL539_25515	PF13505	Outer membrane protein beta-barrel domain
AL539_25520	PF06844	Protein of unknown function (DUF1244)
AL539_25525	PF00291	Pyridoxal-phosphate dependent enzyme
AL539_25530	PF01037	AsnC family
AL539_25530	PF13412	Winged helix-turn-helix DNA-binding
AL539_25540	PF13622	Thioesterase-like superfamily
AL539_25545	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AL539_25550	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL539_25560	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_25560	PF00990	GGDEF domain
AL539_25570	PF00588	SpoU rRNA Methylase family
AL539_25575	PF00571	CBS domain
AL539_25580	PF00122	E1-E2 ATPase
AL539_25580	PF00403	Heavy-metal-associated domain
AL539_25580	PF00702	haloacid dehalogenase-like hydrolase
AL539_25585	PF01048	Phosphorylase superfamily
AL539_25590	PF09002	Domain of unknown function (DUF1887)
AL539_25595	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL539_25600	PF01230	HIT domain
AL539_25610	PF07233	Protein of unknown function (DUF1425)
AL539_25615	PF13036	Protein of unknown function (DUF3897)
AL539_25620	PF01636	Phosphotransferase enzyme family
AL539_25625	PF05728	Uncharacterised protein family (UPF0227)
AL539_25630	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL539_25635	PF13302	Acetyltransferase (GNAT) domain
AL539_25640	PF10972	AL539_25640
AL539_25645	PF00270	DEAD/DEAH box helicase
AL539_25645	PF00271	Helicase conserved C-terminal domain
AL539_25645	PF02559	CarD-like/TRCF domain
AL539_25645	PF03461	TRCF domain
AL539_25655	PF02687	AL539_25655
AL539_25655	PF12704	MacB-like periplasmic core domain
AL539_25660	PF00005	ABC transporter
AL539_25665	PF02687	AL539_25665
AL539_25665	PF12704	MacB-like periplasmic core domain
AL539_25670	PF09835	AL539_25670
AL539_25675	PF00753	Metallo-beta-lactamase superfamily
AL539_25675	PF03772	AL539_25675
AL539_25680	PF00005	ABC transporter
AL539_25680	PF00664	ABC transporter transmembrane region
AL539_25685	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
AL539_25690	PF03966	Trm112p-like protein
AL539_25695	PF02348	Cytidylyltransferase
AL539_25700	PF04293	AL539_25700
AL539_25705	PF04285	AL539_25705
AL539_25710	PF06798	AL539_25710
AL539_25710	PF08298	PrkA AAA domain
AL539_25720	PF03887	YfbU domain
AL539_25725	PF01891	Cobalt uptake substrate-specific transmembrane region
AL539_25730	PF04055	Radical SAM superfamily
AL539_25730	PF13353	4Fe-4S single cluster domain
AL539_25735	PF09982	Uncharacterized protein conserved in bacteria (DUF2219)
AL539_25740	PF01228	Glycine radical
AL539_25740	PF02901	Pyruvate formate lyase
AL539_25745	PF11840	AL539_25745
AL539_25760	PF00005	ABC transporter
AL539_25765	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL539_25770	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_25775	PF00528	Binding-protein-dependent transport system inner membrane component
AL539_25780	PF17291	AL539_25780
AL539_25785	PF03372	Endonuclease/Exonuclease/phosphatase family
AL539_25790	PF10689	AL539_25790
AL539_25795	PF07445	Primosomal replication protein priB and priC
AL539_25800	PF01925	AL539_25800
AL539_25805	PF04851	Type III restriction enzyme, res subunit
AL539_25805	PF13307	Helicase C-terminal domain
AL539_25810	PF13609	Gram-negative porin
AL539_25815	PF09829	AL539_25815
AL539_25820	PF00849	RNA pseudouridylate synthase
AL539_25825	PF03971	Monomeric isocitrate dehydrogenase
AL539_25830	PF00313	'Cold-shock' DNA-binding domain
AL539_25835	PF02617	ATP-dependent Clp protease adaptor protein ClpS
AL539_25840	PF00004	ATPase family associated with various cellular activities (AAA)
AL539_25840	PF02861	Clp amino terminal domain
AL539_25840	PF07724	AAA domain (Cdc48 subfamily)
AL539_25840	PF10431	C-terminal, D2-small domain, of ClpB protein
AL539_25845	PF01176	Translation initiation factor 1A / IF-1
AL539_25850	PF04376	AL539_25850
AL539_25850	PF04377	AL539_25850
AL539_25855	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
AL539_25860	PF05433	AL539_25860
AL539_25865	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL539_25870	PF10692	Protein of unknown function (DUF2498)
AL539_25875	PF01131	DNA topoisomerase
AL539_25875	PF01396	AL539_25875
AL539_25875	PF01751	Toprim domain
AL539_25875	PF08272	Topoisomerase I zinc-ribbon-like
AL539_25880	PF00483	Nucleotidyl transferase
AL539_25885	PF00534	Glycosyl transferases group 1
AL539_25885	PF08323	Starch synthase catalytic domain
AL539_25890	PF00561	alpha/beta hydrolase fold
AL539_25895	PF09413	Domain of unknown function (DUF2007)
AL539_25900	PF09335	AL539_25900
AL539_25905	PF04993	TfoX N-terminal domain
AL539_25905	PF04994	TfoX C-terminal domain
AL539_25910	PF00356	Bacterial regulatory proteins, lacI family
AL539_25910	PF13377	Periplasmic binding protein-like domain
AL539_25915	PF02613	Nitrate reductase delta subunit
AL539_25920	PF00072	Response regulator receiver domain
AL539_25920	PF00486	Transcriptional regulatory protein, C terminal
AL539_25925	PF02698	DUF218 domain
AL539_25930	PF08241	Methyltransferase domain
AL539_25935	PF03882	KicB killing factor
AL539_25935	PF17192	AL539_25935
AL539_25935	PF17193	AL539_25935
AL539_25940	PF04288	MukE-like family
AL539_25945	PF04310	MukB N-terminal
AL539_25945	PF13558	Putative exonuclease SbcCD, C subunit
AL539_25945	PF16330	AL539_25945
AL539_25955	PF14397	AL539_25955
AL539_25960	PF14400	AL539_25960
AL539_25960	PF14402	AL539_25960
AL539_25965	PF05618	Putative ATP-dependant zinc protease
AL539_25975	PF08003	Protein of unknown function (DUF1698)
AL539_25980	PF13649	Methyltransferase domain
AL539_25985	PF01904	Protein of unknown function DUF72
AL539_25990	PF00152	tRNA synthetases class II (D, K and N)
AL539_25990	PF01336	OB-fold nucleic acid binding domain
AL539_25990	PF02938	GAD domain
AL539_25995	PF01709	Transcriptional regulator
AL539_26000	PF02075	Crossover junction endodeoxyribonuclease RuvC
AL539_26005	PF01330	RuvA N terminal domain
AL539_26005	PF07499	RuvA, C-terminal domain
AL539_26005	PF14520	Helix-hairpin-helix domain
AL539_26010	PF05491	Holliday junction DNA helicase ruvB C-terminus
AL539_26010	PF05496	Holliday junction DNA helicase ruvB N-terminus
AL539_26015	PF01654	AL539_26015
AL539_26020	PF02322	AL539_26020
AL539_26025	PF08173	AL539_26025
AL539_26030	PF09600	AL539_26030
AL539_26035	PF03061	Thioesterase superfamily
AL539_26040	PF01618	AL539_26040
AL539_26045	PF02472	Biopolymer transport protein ExbD/TolR
AL539_26050	PF06519	TolA C-terminal
AL539_26055	PF04052	TolB amino-terminal domain
AL539_26055	PF07676	WD40-like Beta Propeller Repeat
AL539_26060	PF00691	OmpA family
AL539_26065	PF13174	Tetratricopeptide repeat
AL539_26065	PF13432	Tetratricopeptide repeat
AL539_26065	PF16331	AL539_26065
AL539_26070	PF02445	Quinolinate synthetase A protein
AL539_26075	PF07885	Ion channel
AL539_26080	PF03994	AL539_26080
AL539_26085	PF06693	AL539_26085
AL539_26090	PF03738	Glutathionylspermidine synthase preATP-grasp
AL539_26095	PF03695	Uncharacterised protein family (UPF0149)