AL539_00025 SM00331 Sigma factor PP2C-like phosphatases AL539_00025 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AL539_00070 SM00382 ATPases associated with a variety of cellular activities AL539_00070 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_00140 SM00382 ATPases associated with a variety of cellular activities AL539_00180 SM01005 Alanine racemase, C-terminal domain AL539_00185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_00185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_00200 SM00642 Alpha-amylase domain AL539_00215 SM00880 AL539_00215 AL539_00240 SM00267 diguanylate cyclase AL539_00250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_00250 SM00267 diguanylate cyclase AL539_00370 SM00387 Histidine kinase-like ATPases AL539_00375 SM00421 helix_turn_helix, Lux Regulon AL539_00375 SM00448 cheY-homologous receiver domain AL539_00425 SM00450 Rhodanese Homology Domain AL539_00430 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_00470 SM00342 helix_turn_helix, arabinose operon control protein AL539_00510 SM00382 ATPases associated with a variety of cellular activities AL539_00520 SM00267 diguanylate cyclase AL539_00520 SM00448 cheY-homologous receiver domain AL539_00525 SM00267 diguanylate cyclase AL539_00555 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL539_00555 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL539_00565 SM00387 Histidine kinase-like ATPases AL539_00565 SM00388 His Kinase A (phosphoacceptor) domain AL539_00570 SM00448 cheY-homologous receiver domain AL539_00570 SM00862 Transcriptional regulatory protein, C terminal AL539_00640 SM00881 CoA binding domain AL539_00665 SM00091 PAS domain AL539_00665 SM00267 diguanylate cyclase AL539_00665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_00675 SM00796 Allophanate hydrolase subunit 1 AL539_00680 SM00797 Allophanate hydrolase subunit 2 AL539_00695 SM00382 ATPases associated with a variety of cellular activities AL539_00710 SM00052 Putative diguanylate phosphodiesterase AL539_00710 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_00710 SM00267 diguanylate cyclase AL539_00720 SM00271 DnaJ molecular chaperone homology domain AL539_00785 SM00782 PhnA Zinc-Ribbon AL539_00820 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_00825 SM00867 YceI-like domain AL539_00845 SM00052 Putative diguanylate phosphodiesterase AL539_00850 SM00487 DEAD-like helicases superfamily AL539_00850 SM00490 helicase superfamily c-terminal domain AL539_00865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_00905 SM00495 Chitin-binding domain type 3 AL539_00905 SM00636 AL539_00905 AL539_00915 SM00342 helix_turn_helix, arabinose operon control protein AL539_00930 SM00382 ATPases associated with a variety of cellular activities AL539_00940 SM00062 Bacterial periplasmic substrate-binding proteins AL539_00940 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_00950 SM00052 Putative diguanylate phosphodiesterase AL539_00965 SM00354 helix_turn _helix lactose operon repressor AL539_01015 SM00530 Helix-turn-helix XRE-family like proteins AL539_01045 SM00849 Metallo-beta-lactamase superfamily AL539_01065 SM00342 helix_turn_helix, arabinose operon control protein AL539_01090 SM00479 AL539_01090 AL539_01100 SM00382 ATPases associated with a variety of cellular activities AL539_01135 SM00422 helix_turn_helix, mercury resistance AL539_01175 SM00924 MgtE intracellular N domain AL539_01215 SM00953 AL539_01215 AL539_01230 SM00704 CDGSH-type zinc finger. Function unknown. AL539_01295 SM00260 Two component signalling adaptor domain AL539_01295 SM00448 cheY-homologous receiver domain AL539_01305 SM00421 helix_turn_helix, Lux Regulon AL539_01305 SM00448 cheY-homologous receiver domain AL539_01315 SM00267 diguanylate cyclase AL539_01320 SM00421 helix_turn_helix, Lux Regulon AL539_01320 SM00448 cheY-homologous receiver domain AL539_01325 SM00052 Putative diguanylate phosphodiesterase AL539_01325 SM00448 cheY-homologous receiver domain AL539_01330 SM00062 Bacterial periplasmic substrate-binding proteins AL539_01330 SM00387 Histidine kinase-like ATPases AL539_01330 SM00388 His Kinase A (phosphoacceptor) domain AL539_01330 SM00448 cheY-homologous receiver domain AL539_01345 SM00387 Histidine kinase-like ATPases AL539_01345 SM00448 cheY-homologous receiver domain AL539_01380 SM00990 AL539_01380 AL539_01395 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL539_01420 SM00327 von Willebrand factor (vWF) type A domain AL539_01460 SM00862 Transcriptional regulatory protein, C terminal AL539_01475 SM00073 Histidine Phosphotransfer domain AL539_01475 SM00387 Histidine kinase-like ATPases AL539_01475 SM00388 His Kinase A (phosphoacceptor) domain AL539_01475 SM00448 cheY-homologous receiver domain AL539_01485 SM00851 MGS-like domain AL539_01540 SM00422 helix_turn_helix, mercury resistance AL539_01545 SM00382 ATPases associated with a variety of cellular activities AL539_01585 SM00354 helix_turn _helix lactose operon repressor AL539_01605 SM00382 ATPases associated with a variety of cellular activities AL539_01615 SM00052 Putative diguanylate phosphodiesterase AL539_01615 SM00267 diguanylate cyclase AL539_01670 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL539_01680 SM00387 Histidine kinase-like ATPases AL539_01680 SM00388 His Kinase A (phosphoacceptor) domain AL539_01680 SM00448 cheY-homologous receiver domain AL539_01695 SM00244 prohibitin homologues AL539_01710 SM00382 ATPases associated with a variety of cellular activities AL539_01740 SM00028 Tetratricopeptide repeats AL539_01740 SM00267 diguanylate cyclase AL539_01745 SM00822 AL539_01745 AL539_01780 SM00422 helix_turn_helix, mercury resistance AL539_01800 SM00878 Biotin carboxylase C-terminal domain AL539_01825 SM01266 AL539_01825 AL539_01830 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_01920 SM00382 ATPases associated with a variety of cellular activities AL539_01945 SM00382 ATPases associated with a variety of cellular activities AL539_01960 SM00893 Electron transfer flavoprotein domain AL539_01965 SM00893 Electron transfer flavoprotein domain AL539_01985 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_01985 SM00866 AL539_01985 AL539_02030 SM00822 AL539_02030 AL539_02040 SM00342 helix_turn_helix, arabinose operon control protein AL539_02080 SM00240 Forkhead associated domain AL539_02100 SM00344 helix_turn_helix ASNC type AL539_02135 SM00220 Serine/Threonine protein kinases, catalytic domain AL539_02170 SM00382 ATPases associated with a variety of cellular activities AL539_02170 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_02175 SM00382 ATPases associated with a variety of cellular activities AL539_02240 SM00342 helix_turn_helix, arabinose operon control protein AL539_02310 SM01240 AL539_02310 AL539_02325 SM00448 cheY-homologous receiver domain AL539_02360 SM00852 Probable molybdopterin binding domain AL539_02380 SM00450 Rhodanese Homology Domain AL539_02405 SM00861 Transketolase, pyrimidine binding domain AL539_02410 SM00091 PAS domain AL539_02410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_02445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_02480 SM00421 helix_turn_helix, Lux Regulon AL539_02480 SM00448 cheY-homologous receiver domain AL539_02485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_02485 SM00387 Histidine kinase-like ATPases AL539_02500 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_02535 SM00822 AL539_02535 AL539_02585 SM00344 helix_turn_helix ASNC type AL539_02610 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_02615 SM00387 Histidine kinase-like ATPases AL539_02615 SM00388 His Kinase A (phosphoacceptor) domain AL539_02615 SM00448 cheY-homologous receiver domain AL539_02630 SM00465 GIY-YIG type nucleases (URI domain) AL539_02655 SM00387 Histidine kinase-like ATPases AL539_02655 SM00388 His Kinase A (phosphoacceptor) domain AL539_02655 SM00448 cheY-homologous receiver domain AL539_02660 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_02685 SM00344 helix_turn_helix ASNC type AL539_02700 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_02710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_02710 SM00387 Histidine kinase-like ATPases AL539_02710 SM00388 His Kinase A (phosphoacceptor) domain AL539_02715 SM00448 cheY-homologous receiver domain AL539_02715 SM00862 Transcriptional regulatory protein, C terminal AL539_02735 SM00342 helix_turn_helix, arabinose operon control protein AL539_02755 SM00924 MgtE intracellular N domain AL539_02770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_02775 SM00530 Helix-turn-helix XRE-family like proteins AL539_02785 SM00563 Phosphate acyltransferases AL539_02830 SM00448 cheY-homologous receiver domain AL539_02830 SM00862 Transcriptional regulatory protein, C terminal AL539_02835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_02835 SM00387 Histidine kinase-like ATPases AL539_02835 SM00388 His Kinase A (phosphoacceptor) domain AL539_02880 SM00357 Cold shock protein domain AL539_02910 SM00936 Penicillin-binding protein 5, C-terminal domain AL539_02930 SM00640 Glycosyl hydrolases family 32 AL539_02945 SM00354 helix_turn _helix lactose operon repressor AL539_02965 SM00822 AL539_02965 AL539_03005 SM00342 helix_turn_helix, arabinose operon control protein AL539_03005 SM00871 Bacterial transcription activator, effector binding domain AL539_03040 SM00487 DEAD-like helicases superfamily AL539_03040 SM00490 helicase superfamily c-terminal domain AL539_03070 SM00829 Enoylreductase AL539_03085 SM00342 helix_turn_helix, arabinose operon control protein AL539_03105 SM00344 helix_turn_helix ASNC type AL539_03140 SM00788 Adenylosuccinate synthetase AL539_03145 SM00870 AL539_03145 AL539_03165 SM00421 helix_turn_helix, Lux Regulon AL539_03200 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_03200 SM00866 AL539_03200 AL539_03225 SM00382 ATPases associated with a variety of cellular activities AL539_03275 SM00155 Phospholipase D. Active site motifs. AL539_03285 SM01022 AL539_03285 AL539_03290 SM00028 Tetratricopeptide repeats AL539_03300 SM00422 helix_turn_helix, mercury resistance AL539_03325 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL539_03335 SM00838 Elongation factor G C-terminus AL539_03335 SM00889 Elongation factor G, domain IV AL539_03375 SM00382 ATPases associated with a variety of cellular activities AL539_03450 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_03450 SM01134 AL539_03450 AL539_03480 SM00342 helix_turn_helix, arabinose operon control protein AL539_03520 SM00883 Chaperonin 10 Kd subunit AL539_03525 SM00450 Rhodanese Homology Domain AL539_03540 SM01240 AL539_03540 AL539_03615 SM00858 AL539_03615 AL539_03680 SM00631 AL539_03680 AL539_03710 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_03710 SM00866 AL539_03710 AL539_03720 SM00382 ATPases associated with a variety of cellular activities AL539_03775 SM00382 ATPases associated with a variety of cellular activities AL539_03800 SM01057 Eukaryotic-type carbonic anhydrase AL539_03860 SM01266 AL539_03860 AL539_03895 SM00267 diguanylate cyclase AL539_03905 SM00530 Helix-turn-helix XRE-family like proteins AL539_03910 SM00267 diguanylate cyclase AL539_03910 SM01079 AL539_03910 AL539_04000 SM00267 diguanylate cyclase AL539_04005 SM00382 ATPases associated with a variety of cellular activities AL539_04005 SM00448 cheY-homologous receiver domain AL539_04010 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_04010 SM00387 Histidine kinase-like ATPases AL539_04065 SM00849 Metallo-beta-lactamase superfamily AL539_04105 SM00382 ATPases associated with a variety of cellular activities AL539_04175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_04175 SM00387 Histidine kinase-like ATPases AL539_04175 SM00388 His Kinase A (phosphoacceptor) domain AL539_04180 SM00448 cheY-homologous receiver domain AL539_04180 SM00862 Transcriptional regulatory protein, C terminal AL539_04275 SM00382 ATPases associated with a variety of cellular activities AL539_04305 SM00014 Acid phosphatase homologues AL539_04325 SM00822 AL539_04325 AL539_04360 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_04455 SM00495 Chitin-binding domain type 3 AL539_04460 SM00344 helix_turn_helix ASNC type AL539_04485 SM00829 Enoylreductase AL539_04500 SM00267 diguanylate cyclase AL539_04520 SM00849 Metallo-beta-lactamase superfamily AL539_04540 SM00267 diguanylate cyclase AL539_04615 SM00342 helix_turn_helix, arabinose operon control protein AL539_04615 SM01009 AlkA N-terminal domain AL539_04665 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_04670 SM00382 ATPases associated with a variety of cellular activities AL539_04700 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_04700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_04700 SM01049 AL539_04700 AL539_04715 SM00448 cheY-homologous receiver domain AL539_04715 SM00850 LytTr DNA-binding domain AL539_04720 SM00387 Histidine kinase-like ATPases AL539_04740 SM00382 ATPases associated with a variety of cellular activities AL539_04765 SM00387 Histidine kinase-like ATPases AL539_04765 SM00388 His Kinase A (phosphoacceptor) domain AL539_04765 SM00448 cheY-homologous receiver domain AL539_04785 SM00382 ATPases associated with a variety of cellular activities AL539_04790 SM00382 ATPases associated with a variety of cellular activities AL539_04810 SM00470 ParB-like nuclease domain AL539_04890 SM00382 ATPases associated with a variety of cellular activities AL539_04895 SM00052 Putative diguanylate phosphodiesterase AL539_04895 SM00267 diguanylate cyclase AL539_04910 SM00448 cheY-homologous receiver domain AL539_04915 SM00387 Histidine kinase-like ATPases AL539_04925 SM00421 helix_turn_helix, Lux Regulon AL539_04930 SM00342 helix_turn_helix, arabinose operon control protein AL539_04955 SM00360 RNA recognition motif AL539_04975 SM00344 helix_turn_helix ASNC type AL539_04985 SM00382 ATPases associated with a variety of cellular activities AL539_04995 SM00487 DEAD-like helicases superfamily AL539_04995 SM00490 helicase superfamily c-terminal domain AL539_05005 SM00342 helix_turn_helix, arabinose operon control protein AL539_05010 SM00829 Enoylreductase AL539_05065 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_05090 SM00342 helix_turn_helix, arabinose operon control protein AL539_05090 SM00871 Bacterial transcription activator, effector binding domain AL539_05095 SM00342 helix_turn_helix, arabinose operon control protein AL539_05120 SM00382 ATPases associated with a variety of cellular activities AL539_05190 SM00382 ATPases associated with a variety of cellular activities AL539_05195 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_05195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_05230 SM00857 Resolvase, N terminal domain AL539_05235 SM00354 helix_turn _helix lactose operon repressor AL539_05270 SM00354 helix_turn _helix lactose operon repressor AL539_05325 SM00642 Alpha-amylase domain AL539_05345 SM00642 Alpha-amylase domain AL539_05355 SM00642 Alpha-amylase domain AL539_05360 SM00671 Sel1-like repeats. AL539_05365 SM00966 SpoVT / AbrB like domain AL539_05405 SM00421 helix_turn_helix, Lux Regulon AL539_05420 SM00642 Alpha-amylase domain AL539_05430 SM00642 Alpha-amylase domain AL539_05515 SM00226 Low molecular weight phosphatase family AL539_05545 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AL539_05560 SM00450 Rhodanese Homology Domain AL539_05570 SM00936 Penicillin-binding protein 5, C-terminal domain AL539_05575 SM00642 Alpha-amylase domain AL539_05580 SM00342 helix_turn_helix, arabinose operon control protein AL539_05690 SM00448 cheY-homologous receiver domain AL539_05690 SM00862 Transcriptional regulatory protein, C terminal AL539_05695 SM00387 Histidine kinase-like ATPases AL539_05695 SM00388 His Kinase A (phosphoacceptor) domain AL539_05850 SM00382 ATPases associated with a variety of cellular activities AL539_05875 SM00382 ATPases associated with a variety of cellular activities AL539_05885 SM00020 Trypsin-like serine protease AL539_05905 SM00481 DNA polymerase alpha chain like domain AL539_05950 SM00448 cheY-homologous receiver domain AL539_05950 SM00862 Transcriptional regulatory protein, C terminal AL539_05955 SM00388 His Kinase A (phosphoacceptor) domain AL539_05970 SM00062 Bacterial periplasmic substrate-binding proteins AL539_05975 SM00052 Putative diguanylate phosphodiesterase AL539_05975 SM00267 diguanylate cyclase AL539_05985 SM00829 Enoylreductase AL539_05990 SM00972 Spore Coat Protein U domain AL539_05995 SM00972 Spore Coat Protein U domain AL539_06010 SM00972 Spore Coat Protein U domain AL539_06015 SM01057 Eukaryotic-type carbonic anhydrase AL539_06050 SM00382 ATPases associated with a variety of cellular activities AL539_06065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_06065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_06085 SM00587 ZnF_C4 abd HLH domain containing kinases domain AL539_06120 SM00382 ATPases associated with a variety of cellular activities AL539_06140 SM00267 diguanylate cyclase AL539_06145 SM00028 Tetratricopeptide repeats AL539_06165 SM00422 helix_turn_helix, mercury resistance AL539_06175 SM00257 Lysin motif AL539_06185 SM00487 DEAD-like helicases superfamily AL539_06185 SM00490 helicase superfamily c-terminal domain AL539_06215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_06215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_06235 SM00382 ATPases associated with a variety of cellular activities AL539_06240 SM00267 diguanylate cyclase AL539_06250 SM00327 von Willebrand factor (vWF) type A domain AL539_06255 SM00327 von Willebrand factor (vWF) type A domain AL539_06275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_06275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_06285 SM00421 helix_turn_helix, Lux Regulon AL539_06290 SM00421 helix_turn_helix, Lux Regulon AL539_06300 SM00382 ATPases associated with a variety of cellular activities AL539_06325 SM00382 ATPases associated with a variety of cellular activities AL539_06335 SM00382 ATPases associated with a variety of cellular activities AL539_06340 SM00387 Histidine kinase-like ATPases AL539_06340 SM00388 His Kinase A (phosphoacceptor) domain AL539_06345 SM00448 cheY-homologous receiver domain AL539_06345 SM00862 Transcriptional regulatory protein, C terminal AL539_06410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_06410 SM00382 ATPases associated with a variety of cellular activities AL539_06415 SM00849 Metallo-beta-lactamase superfamily AL539_06435 SM01060 AL539_06435 AL539_06445 SM00829 Enoylreductase AL539_06455 SM01022 AL539_06455 AL539_06515 SM00382 ATPases associated with a variety of cellular activities AL539_06550 SM00342 helix_turn_helix, arabinose operon control protein AL539_06555 SM00382 ATPases associated with a variety of cellular activities AL539_06560 SM00382 ATPases associated with a variety of cellular activities AL539_06660 SM00382 ATPases associated with a variety of cellular activities AL539_06690 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_06710 SM00260 Two component signalling adaptor domain AL539_06710 SM00448 cheY-homologous receiver domain AL539_06725 SM00382 ATPases associated with a variety of cellular activities AL539_06730 SM00382 ATPases associated with a variety of cellular activities AL539_06745 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_06745 SM01134 AL539_06745 AL539_06760 SM01007 Class II Aldolase and Adducin N-terminal domain AL539_06795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_06795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_06830 SM00422 helix_turn_helix, mercury resistance AL539_06835 SM00642 Alpha-amylase domain AL539_06840 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_06865 SM00382 ATPases associated with a variety of cellular activities AL539_06910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_06910 SM00267 diguanylate cyclase AL539_06945 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_06960 SM00382 ATPases associated with a variety of cellular activities AL539_06980 SM00342 helix_turn_helix, arabinose operon control protein AL539_06990 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_07045 SM00530 Helix-turn-helix XRE-family like proteins AL539_07065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_07065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_07100 SM00052 Putative diguanylate phosphodiesterase AL539_07100 SM00267 diguanylate cyclase AL539_07160 SM00342 helix_turn_helix, arabinose operon control protein AL539_07250 SM01322 AL539_07250 AL539_07255 SM00357 Cold shock protein domain AL539_07265 SM00062 Bacterial periplasmic substrate-binding proteins AL539_07265 SM00267 diguanylate cyclase AL539_07280 SM00382 ATPases associated with a variety of cellular activities AL539_07285 SM00382 ATPases associated with a variety of cellular activities AL539_07295 SM00448 cheY-homologous receiver domain AL539_07320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_07320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_07405 SM00857 Resolvase, N terminal domain AL539_07440 SM00487 DEAD-like helicases superfamily AL539_07600 SM00357 Cold shock protein domain AL539_07620 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL539_07625 SM00487 DEAD-like helicases superfamily AL539_07625 SM00490 helicase superfamily c-terminal domain AL539_07645 SM00052 Putative diguanylate phosphodiesterase AL539_07650 SM00382 ATPases associated with a variety of cellular activities AL539_07655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_07680 SM00342 helix_turn_helix, arabinose operon control protein AL539_07685 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_07685 SM00357 Cold shock protein domain AL539_07685 SM00955 AL539_07685 AL539_07690 SM00487 DEAD-like helicases superfamily AL539_07690 SM00490 helicase superfamily c-terminal domain AL539_07740 SM00342 helix_turn_helix, arabinose operon control protein AL539_07785 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL539_07790 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL539_07820 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_07820 SM00091 PAS domain AL539_07820 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_07850 SM00422 helix_turn_helix, mercury resistance AL539_07885 SM00822 AL539_07885 AL539_07970 SM00382 ATPases associated with a variety of cellular activities AL539_07975 SM00062 Bacterial periplasmic substrate-binding proteins AL539_07975 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_08020 SM00893 Electron transfer flavoprotein domain AL539_08030 SM00861 Transketolase, pyrimidine binding domain AL539_08090 SM00448 cheY-homologous receiver domain AL539_08090 SM00862 Transcriptional regulatory protein, C terminal AL539_08095 SM00388 His Kinase A (phosphoacceptor) domain AL539_08100 SM00871 Bacterial transcription activator, effector binding domain AL539_08120 SM00028 Tetratricopeptide repeats AL539_08120 SM00267 diguanylate cyclase AL539_08140 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_08160 SM01012 AL539_08160 AL539_08190 SM00382 ATPases associated with a variety of cellular activities AL539_08225 SM00331 Sigma factor PP2C-like phosphatases AL539_08225 SM00448 cheY-homologous receiver domain AL539_08245 SM00220 Serine/Threonine protein kinases, catalytic domain AL539_08250 SM00240 Forkhead associated domain AL539_08265 SM00052 Putative diguanylate phosphodiesterase AL539_08385 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL539_08385 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL539_08385 SM00493 AL539_08385 AL539_08550 SM00470 ParB-like nuclease domain AL539_08565 SM00487 DEAD-like helicases superfamily AL539_08605 SM00671 Sel1-like repeats. AL539_08750 SM00318 Staphylococcal nuclease homologues AL539_08890 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AL539_08920 SM00382 ATPases associated with a variety of cellular activities AL539_09035 SM00487 DEAD-like helicases superfamily AL539_09075 SM00382 ATPases associated with a variety of cellular activities AL539_09095 SM00327 von Willebrand factor (vWF) type A domain AL539_09110 SM00778 Zinc-binding domain of primase-helicase AL539_09140 SM00857 Resolvase, N terminal domain AL539_09150 SM00530 Helix-turn-helix XRE-family like proteins AL539_09220 SM00530 Helix-turn-helix XRE-family like proteins AL539_09245 SM00778 Zinc-binding domain of primase-helicase AL539_09275 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_09405 SM00327 von Willebrand factor (vWF) type A domain AL539_09515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_09515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_09530 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_09560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_09690 SM00857 Resolvase, N terminal domain AL539_09715 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL539_09715 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL539_09720 SM00344 helix_turn_helix ASNC type AL539_09725 SM00843 AL539_09725 AL539_09735 SM00382 ATPases associated with a variety of cellular activities AL539_09765 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_09765 SM00876 Biotin and Thiamin Synthesis associated domain AL539_09860 SM00528 Domain in histone-like proteins of HNS family AL539_09915 SM00052 Putative diguanylate phosphodiesterase AL539_09930 SM00840 AL539_09930 AL539_10005 SM01131 AL539_10005 AL539_10015 SM00382 ATPases associated with a variety of cellular activities AL539_10020 SM00382 ATPases associated with a variety of cellular activities AL539_10040 SM00382 ATPases associated with a variety of cellular activities AL539_10095 SM00155 Phospholipase D. Active site motifs. AL539_10125 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_10125 SM00382 ATPases associated with a variety of cellular activities AL539_10145 SM00382 ATPases associated with a variety of cellular activities AL539_10195 SM00387 Histidine kinase-like ATPases AL539_10200 SM00448 cheY-homologous receiver domain AL539_10200 SM00862 Transcriptional regulatory protein, C terminal AL539_10210 SM00487 DEAD-like helicases superfamily AL539_10210 SM00490 helicase superfamily c-terminal domain AL539_10215 SM00363 S4 RNA-binding domain AL539_10245 SM00382 ATPases associated with a variety of cellular activities AL539_10340 SM00448 cheY-homologous receiver domain AL539_10345 SM00387 Histidine kinase-like ATPases AL539_10365 SM00382 ATPases associated with a variety of cellular activities AL539_10370 SM00382 ATPases associated with a variety of cellular activities AL539_10395 SM00267 diguanylate cyclase AL539_10410 SM00919 Malic enzyme, NAD binding domain AL539_10410 SM01274 AL539_10410 AL539_10415 SM00487 DEAD-like helicases superfamily AL539_10415 SM00490 helicase superfamily c-terminal domain AL539_10500 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_10500 SM00866 AL539_10500 AL539_10515 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL539_10540 SM00530 Helix-turn-helix XRE-family like proteins AL539_10575 SM00873 B3/4 domain AL539_10575 SM00874 tRNA synthetase B5 domain AL539_10575 SM00896 Ferredoxin-fold anticodon binding domain AL539_10585 SM00411 bacterial (prokaryotic) histone like domain AL539_10620 SM00479 AL539_10620 AL539_10650 SM00855 Phosphoglycerate mutase family AL539_10670 SM00382 ATPases associated with a variety of cellular activities AL539_10715 SM00245 tail specific protease AL539_10725 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_10725 SM00895 AL539_10725 AL539_10755 SM01130 AL539_10755 AL539_10760 SM00382 ATPases associated with a variety of cellular activities AL539_10780 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL539_10790 SM00382 ATPases associated with a variety of cellular activities AL539_10795 SM00382 ATPases associated with a variety of cellular activities AL539_11005 SM01230 AL539_11005 AL539_11020 SM00530 Helix-turn-helix XRE-family like proteins AL539_11055 SM00052 Putative diguanylate phosphodiesterase AL539_11065 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_11095 SM00387 Histidine kinase-like ATPases AL539_11095 SM00388 His Kinase A (phosphoacceptor) domain AL539_11095 SM00448 cheY-homologous receiver domain AL539_11100 SM00052 Putative diguanylate phosphodiesterase AL539_11100 SM00267 diguanylate cyclase AL539_11110 SM00028 Tetratricopeptide repeats AL539_11190 SM00382 ATPases associated with a variety of cellular activities AL539_11195 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_11195 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_11200 SM00479 AL539_11200 AL539_11235 SM00028 Tetratricopeptide repeats AL539_11300 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_11300 SM01134 AL539_11300 AL539_11315 SM00267 diguanylate cyclase AL539_11340 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_11340 SM00387 Histidine kinase-like ATPases AL539_11345 SM00448 cheY-homologous receiver domain AL539_11350 SM00052 Putative diguanylate phosphodiesterase AL539_11350 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_11350 SM00091 PAS domain AL539_11350 SM00267 diguanylate cyclase AL539_11355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_11385 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AL539_11390 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_11415 SM00382 ATPases associated with a variety of cellular activities AL539_11440 SM00382 ATPases associated with a variety of cellular activities AL539_11445 SM00382 ATPases associated with a variety of cellular activities AL539_11500 SM00267 diguanylate cyclase AL539_11500 SM01079 AL539_11500 AL539_11505 SM00479 AL539_11505 AL539_11540 SM00382 ATPases associated with a variety of cellular activities AL539_11540 SM00487 DEAD-like helicases superfamily AL539_11540 SM00490 helicase superfamily c-terminal domain AL539_11540 SM00847 Helicase associated domain (HA2) Add an annotation AL539_11615 SM00382 ATPases associated with a variety of cellular activities AL539_11615 SM00448 cheY-homologous receiver domain AL539_11675 SM00448 cheY-homologous receiver domain AL539_11680 SM00267 diguanylate cyclase AL539_11695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_11725 SM01144 AL539_11725 AL539_11740 SM00852 Probable molybdopterin binding domain AL539_11750 SM00382 ATPases associated with a variety of cellular activities AL539_11765 SM00382 ATPases associated with a variety of cellular activities AL539_11765 SM00448 cheY-homologous receiver domain AL539_11770 SM00387 Histidine kinase-like ATPases AL539_11770 SM00388 His Kinase A (phosphoacceptor) domain AL539_11780 SM00382 ATPases associated with a variety of cellular activities AL539_11815 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_11915 SM00860 SMI1 / KNR4 family AL539_11950 SM00248 ankyrin repeats AL539_11985 SM00382 ATPases associated with a variety of cellular activities AL539_12015 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_12015 SM00419 helix_turn_helix, cAMP Regulatory protein AL539_12065 SM00897 FIST N domain AL539_12065 SM01204 AL539_12065 AL539_12070 SM00387 Histidine kinase-like ATPases AL539_12070 SM00388 His Kinase A (phosphoacceptor) domain AL539_12070 SM00448 cheY-homologous receiver domain AL539_12125 SM00382 ATPases associated with a variety of cellular activities AL539_12135 SM00981 AL539_12135 AL539_12170 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL539_12170 SM00245 tail specific protease AL539_12175 SM00945 ProQ/FINO family AL539_12185 SM00382 ATPases associated with a variety of cellular activities AL539_12240 SM00062 Bacterial periplasmic substrate-binding proteins AL539_12255 SM00382 ATPases associated with a variety of cellular activities AL539_12280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_12285 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL539_12340 SM00028 Tetratricopeptide repeats AL539_12340 SM00267 diguanylate cyclase AL539_12345 SM00346 helix_turn_helix isocitrate lyase regulation AL539_12385 SM00829 Enoylreductase AL539_12390 SM00342 helix_turn_helix, arabinose operon control protein AL539_12400 SM00062 Bacterial periplasmic substrate-binding proteins AL539_12400 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_12410 SM00829 Enoylreductase AL539_12420 SM00382 ATPases associated with a variety of cellular activities AL539_12430 SM00062 Bacterial periplasmic substrate-binding proteins AL539_12430 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_12480 SM00530 Helix-turn-helix XRE-family like proteins AL539_12505 SM00020 Trypsin-like serine protease AL539_12505 SM00495 Chitin-binding domain type 3 AL539_12540 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_12540 SM00895 AL539_12540 AL539_12645 SM00382 ATPases associated with a variety of cellular activities AL539_12685 SM00342 helix_turn_helix, arabinose operon control protein AL539_12785 SM00342 helix_turn_helix, arabinose operon control protein AL539_12810 SM00382 ATPases associated with a variety of cellular activities AL539_12825 SM01350 AL539_12825 AL539_12840 SM00342 helix_turn_helix, arabinose operon control protein AL539_12840 SM00871 Bacterial transcription activator, effector binding domain AL539_12850 SM00448 cheY-homologous receiver domain AL539_12855 SM00091 PAS domain AL539_12855 SM00387 Histidine kinase-like ATPases AL539_12940 SM00155 Phospholipase D. Active site motifs. AL539_12985 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL539_12995 SM01266 AL539_12995 AL539_13360 SM00860 SMI1 / KNR4 family AL539_13770 SM00954 Region found in RelA / SpoT proteins AL539_13795 SM00091 PAS domain AL539_13795 SM00382 ATPases associated with a variety of cellular activities AL539_13830 SM00387 Histidine kinase-like ATPases AL539_13830 SM00388 His Kinase A (phosphoacceptor) domain AL539_13830 SM00448 cheY-homologous receiver domain AL539_13855 SM00052 Putative diguanylate phosphodiesterase AL539_13870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_13870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_13885 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_13910 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_13910 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_13915 SM00479 AL539_13915 AL539_13920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_13920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_13930 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_13935 SM00421 helix_turn_helix, Lux Regulon AL539_13935 SM00448 cheY-homologous receiver domain AL539_13940 SM00387 Histidine kinase-like ATPases AL539_13940 SM01049 AL539_13940 AL539_13970 SM00849 Metallo-beta-lactamase superfamily AL539_14060 SM00434 DNA Topoisomerase IV AL539_14090 SM00852 Probable molybdopterin binding domain AL539_14145 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL539_14145 SM00465 GIY-YIG type nucleases (URI domain) AL539_14150 SM00421 helix_turn_helix, Lux Regulon AL539_14150 SM00448 cheY-homologous receiver domain AL539_14155 SM00486 DNA polymerase type-B family AL539_14165 SM00841 Elongation factor P, C-terminal AL539_14165 SM01185 AL539_14165 AL539_14175 SM00363 S4 RNA-binding domain AL539_14190 SM00481 DNA polymerase alpha chain like domain AL539_14230 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_14230 SM00419 helix_turn_helix, cAMP Regulatory protein AL539_14255 SM00387 Histidine kinase-like ATPases AL539_14255 SM00388 His Kinase A (phosphoacceptor) domain AL539_14255 SM00448 cheY-homologous receiver domain AL539_14305 SM00052 Putative diguanylate phosphodiesterase AL539_14305 SM00091 PAS domain AL539_14310 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_14345 SM00448 cheY-homologous receiver domain AL539_14345 SM00862 Transcriptional regulatory protein, C terminal AL539_14350 SM00387 Histidine kinase-like ATPases AL539_14350 SM00388 His Kinase A (phosphoacceptor) domain AL539_14400 SM00382 ATPases associated with a variety of cellular activities AL539_14455 SM00421 helix_turn_helix, Lux Regulon AL539_14455 SM00448 cheY-homologous receiver domain AL539_14460 SM00387 Histidine kinase-like ATPases AL539_14460 SM00388 His Kinase A (phosphoacceptor) domain AL539_14475 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL539_14520 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL539_14525 SM00028 Tetratricopeptide repeats AL539_14535 SM00411 bacterial (prokaryotic) histone like domain AL539_14540 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_14555 SM00822 AL539_14555 AL539_14570 SM00481 DNA polymerase alpha chain like domain AL539_14575 SM00260 Two component signalling adaptor domain AL539_14575 SM00448 cheY-homologous receiver domain AL539_14645 SM00825 Beta-ketoacyl synthase AL539_14655 SM00822 AL539_14655 AL539_14660 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL539_14690 SM00363 S4 RNA-binding domain AL539_14700 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_14715 SM00226 Low molecular weight phosphatase family AL539_14765 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_14790 SM00267 diguanylate cyclase AL539_14795 SM00642 Alpha-amylase domain AL539_14800 SM00382 ATPases associated with a variety of cellular activities AL539_14840 SM00382 ATPases associated with a variety of cellular activities AL539_14845 SM00382 ATPases associated with a variety of cellular activities AL539_14885 SM00852 Probable molybdopterin binding domain AL539_14890 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_14905 SM00382 ATPases associated with a variety of cellular activities AL539_14905 SM00448 cheY-homologous receiver domain AL539_14910 SM00487 DEAD-like helicases superfamily AL539_14910 SM00490 helicase superfamily c-terminal domain AL539_14945 SM00900 AL539_14945 AL539_14955 SM00478 endonuclease III AL539_14955 SM00525 AL539_14955 AL539_14980 SM00479 AL539_14980 AL539_15040 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL539_15095 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL539_15095 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL539_15095 SM00493 AL539_15095 AL539_15120 SM00870 AL539_15120 AL539_15140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_15150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_15150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_15175 SM00098 Alkaline phosphatase homologues AL539_15220 SM00493 AL539_15220 AL539_15230 SM00382 ATPases associated with a variety of cellular activities AL539_15250 SM00448 cheY-homologous receiver domain AL539_15300 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL539_15315 SM00825 Beta-ketoacyl synthase AL539_15365 SM00463 Small MutS-related domain AL539_15370 SM00855 Phosphoglycerate mutase family AL539_15505 SM00382 ATPases associated with a variety of cellular activities AL539_15515 SM00260 Two component signalling adaptor domain AL539_15520 SM00260 Two component signalling adaptor domain AL539_15530 SM00448 cheY-homologous receiver domain AL539_15535 SM00073 Histidine Phosphotransfer domain AL539_15535 SM00260 Two component signalling adaptor domain AL539_15535 SM00387 Histidine kinase-like ATPases AL539_15535 SM01231 AL539_15535 AL539_15545 SM00448 cheY-homologous receiver domain AL539_15560 SM00382 ATPases associated with a variety of cellular activities AL539_15560 SM00962 SRP54-type protein, GTPase domain AL539_15625 SM00382 ATPases associated with a variety of cellular activities AL539_15650 SM00382 ATPases associated with a variety of cellular activities AL539_15650 SM00448 cheY-homologous receiver domain AL539_15655 SM00387 Histidine kinase-like ATPases AL539_15655 SM00388 His Kinase A (phosphoacceptor) domain AL539_15660 SM00382 ATPases associated with a variety of cellular activities AL539_15755 SM01130 AL539_15755 AL539_15780 SM00028 Tetratricopeptide repeats AL539_15865 SM00479 AL539_15865 AL539_15880 SM00849 Metallo-beta-lactamase superfamily AL539_15885 SM00257 Lysin motif AL539_15900 SM00938 Nitrogen regulatory protein P-II AL539_15910 SM00977 TilS substrate C-terminal domain AL539_15920 SM00481 DNA polymerase alpha chain like domain AL539_15950 SM00935 Outer membrane protein (OmpH-like) AL539_15960 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL539_16005 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_16065 SM00849 Metallo-beta-lactamase superfamily AL539_16130 SM00495 Chitin-binding domain type 3 AL539_16130 SM00636 AL539_16130 AL539_16145 SM00487 DEAD-like helicases superfamily AL539_16145 SM00490 helicase superfamily c-terminal domain AL539_16160 SM00267 diguanylate cyclase AL539_16160 SM00448 cheY-homologous receiver domain AL539_16190 SM00900 AL539_16190 AL539_16245 SM00464 Found in ATP-dependent protease La (LON) AL539_16275 SM00267 diguanylate cyclase AL539_16290 SM00925 MltA specific insert domain AL539_16400 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_16400 SM01134 AL539_16400 AL539_16430 SM00354 helix_turn _helix lactose operon repressor AL539_16445 SM00421 helix_turn_helix, Lux Regulon AL539_16490 SM00838 Elongation factor G C-terminus AL539_16490 SM00889 Elongation factor G, domain IV AL539_16495 SM00382 ATPases associated with a variety of cellular activities AL539_16525 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AL539_16530 SM01133 AL539_16530 AL539_16585 SM00052 Putative diguanylate phosphodiesterase AL539_16585 SM00091 PAS domain AL539_16585 SM00267 diguanylate cyclase AL539_16605 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_16610 SM00028 Tetratricopeptide repeats AL539_16615 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_16615 SM00322 K homology RNA-binding domain AL539_16620 SM01387 AL539_16620 AL539_16640 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_16680 SM00382 ATPases associated with a variety of cellular activities AL539_16690 SM01103 AL539_16690 AL539_16715 SM00363 S4 RNA-binding domain AL539_16755 SM00091 PAS domain AL539_16755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_16755 SM00387 Histidine kinase-like ATPases AL539_16755 SM00388 His Kinase A (phosphoacceptor) domain AL539_16755 SM00448 cheY-homologous receiver domain AL539_16775 SM00382 ATPases associated with a variety of cellular activities AL539_16780 SM00382 ATPases associated with a variety of cellular activities AL539_16800 SM01068 Putative carbohydrate binding domain AL539_16810 SM00382 ATPases associated with a variety of cellular activities AL539_16830 SM00938 Nitrogen regulatory protein P-II AL539_16855 SM00487 DEAD-like helicases superfamily AL539_16855 SM00490 helicase superfamily c-terminal domain AL539_16855 SM00847 Helicase associated domain (HA2) Add an annotation AL539_16910 SM00382 ATPases associated with a variety of cellular activities AL539_16920 SM00947 Carbonic anhydrase AL539_16950 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_16950 SM00895 AL539_16950 AL539_16955 SM00644 AL539_16955 AL539_17020 SM00382 ATPases associated with a variety of cellular activities AL539_17020 SM00962 SRP54-type protein, GTPase domain AL539_17020 SM00963 SRP54-type protein, helical bundle domain AL539_17030 SM01091 Transporter associated domain AL539_17060 SM00829 Enoylreductase AL539_17140 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL539_17150 SM00382 ATPases associated with a variety of cellular activities AL539_17160 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AL539_17160 SM00534 ATPase domain of DNA mismatch repair MUTS family AL539_17170 SM00257 Lysin motif AL539_17205 SM01192 AL539_17205 AL539_17205 SM01193 AL539_17205 AL539_17220 SM00954 Region found in RelA / SpoT proteins AL539_17240 SM00073 Histidine Phosphotransfer domain AL539_17240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_17240 SM00387 Histidine kinase-like ATPases AL539_17240 SM00388 His Kinase A (phosphoacceptor) domain AL539_17240 SM00448 cheY-homologous receiver domain AL539_17265 SM00358 Double-stranded RNA binding motif AL539_17265 SM00535 Ribonuclease III family AL539_17275 SM00838 Elongation factor G C-terminus AL539_17415 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_17430 SM00861 Transketolase, pyrimidine binding domain AL539_17450 SM00731 SprT homologues. AL539_17475 SM00732 Likely ribonuclease with RNase H fold. AL539_17485 SM00382 ATPases associated with a variety of cellular activities AL539_17505 SM01152 AL539_17505 AL539_17520 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_17540 SM00478 endonuclease III AL539_17560 SM00849 Metallo-beta-lactamase superfamily AL539_17695 SM00478 endonuclease III AL539_17715 SM00849 Metallo-beta-lactamase superfamily AL539_17890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_17890 SM01049 AL539_17890 AL539_17970 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_17975 SM00354 helix_turn _helix lactose operon repressor AL539_18005 SM00495 Chitin-binding domain type 3 AL539_18060 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_18105 SM00563 Phosphate acyltransferases AL539_18140 SM00382 ATPases associated with a variety of cellular activities AL539_18150 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_18165 SM00382 ATPases associated with a variety of cellular activities AL539_18195 SM00924 MgtE intracellular N domain AL539_18225 SM00487 DEAD-like helicases superfamily AL539_18225 SM00490 helicase superfamily c-terminal domain AL539_18230 SM00670 Large family of predicted nucleotide-binding domains AL539_18250 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_18290 SM00052 Putative diguanylate phosphodiesterase AL539_18290 SM00267 diguanylate cyclase AL539_18300 SM00421 helix_turn_helix, Lux Regulon AL539_18335 SM01018 B12 binding domain AL539_18455 SM01005 Alanine racemase, C-terminal domain AL539_18515 SM00965 Secretin and TonB N terminus short domain AL539_18535 SM00842 Cell division protein FtsA AL539_18580 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL539_18620 SM00919 Malic enzyme, NAD binding domain AL539_18620 SM01274 AL539_18620 AL539_18640 SM00838 Elongation factor G C-terminus AL539_18640 SM00889 Elongation factor G, domain IV AL539_18680 SM00320 WD40 repeats AL539_18720 SM00382 ATPases associated with a variety of cellular activities AL539_18745 SM00100 Cyclic nucleotide-monophosphate binding domain AL539_18745 SM00419 helix_turn_helix, cAMP Regulatory protein AL539_18750 SM01150 AL539_18750 AL539_18775 SM00347 helix_turn_helix multiple antibiotic resistance protein AL539_18825 SM00967 RNA 2'-O ribose methyltransferase substrate binding AL539_18830 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_18830 SM00357 Cold shock protein domain AL539_18830 SM00955 AL539_18830 AL539_18845 SM00671 Sel1-like repeats. AL539_18855 SM00788 Adenylosuccinate synthetase AL539_18865 SM00244 prohibitin homologues AL539_18870 SM00244 prohibitin homologues AL539_18890 SM00853 MutL C terminal dimerisation domain AL539_18890 SM01340 AL539_18890 AL539_18895 SM00257 Lysin motif AL539_18895 SM00646 AL539_18895 AL539_18975 SM00479 AL539_18975 AL539_19005 SM00450 Rhodanese Homology Domain AL539_19020 SM00971 Serine acetyltransferase, N-terminal AL539_19075 SM00841 Elongation factor P, C-terminal AL539_19075 SM01185 AL539_19075 AL539_19100 SM00883 Chaperonin 10 Kd subunit AL539_19125 SM00448 cheY-homologous receiver domain AL539_19125 SM00862 Transcriptional regulatory protein, C terminal AL539_19130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_19130 SM00387 Histidine kinase-like ATPases AL539_19130 SM00388 His Kinase A (phosphoacceptor) domain AL539_19165 SM00421 helix_turn_helix, Lux Regulon AL539_19165 SM00448 cheY-homologous receiver domain AL539_19170 SM01091 Transporter associated domain AL539_19200 SM00387 Histidine kinase-like ATPases AL539_19200 SM00388 His Kinase A (phosphoacceptor) domain AL539_19200 SM00448 cheY-homologous receiver domain AL539_19215 SM00479 AL539_19215 AL539_19235 SM00878 Biotin carboxylase C-terminal domain AL539_19265 SM00382 ATPases associated with a variety of cellular activities AL539_19345 SM00862 Transcriptional regulatory protein, C terminal AL539_19350 SM00422 helix_turn_helix, mercury resistance AL539_19360 SM00798 AICARFT/IMPCHase bienzyme AL539_19360 SM00851 MGS-like domain AL539_19365 SM01209 AL539_19365 AL539_19365 SM01210 AL539_19365 AL539_19375 SM00411 bacterial (prokaryotic) histone like domain AL539_19380 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_19395 SM00986 Uracil DNA glycosylase superfamily AL539_19395 SM00987 UreE urease accessory protein, C-terminal domain AL539_19415 SM00663 RNA polymerase I subunit A N-terminus AL539_19440 SM00649 Ribosomal protein L11/L12 AL539_19445 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL539_19445 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL539_19505 SM00155 Phospholipase D. Active site motifs. AL539_19570 SM00360 RNA recognition motif AL539_19635 SM00563 Phosphate acyltransferases AL539_19660 SM00450 Rhodanese Homology Domain AL539_19680 SM00382 ATPases associated with a variety of cellular activities AL539_19685 SM00382 ATPases associated with a variety of cellular activities AL539_19685 SM00962 SRP54-type protein, GTPase domain AL539_19685 SM00963 SRP54-type protein, helical bundle domain AL539_19745 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL539_19750 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_19755 SM00052 Putative diguanylate phosphodiesterase AL539_19785 SM01144 AL539_19785 AL539_19790 SM00052 Putative diguanylate phosphodiesterase AL539_19790 SM00897 FIST N domain AL539_19790 SM01204 AL539_19790 AL539_19825 SM01219 AL539_19825 AL539_19850 SM00028 Tetratricopeptide repeats AL539_19910 SM00357 Cold shock protein domain AL539_19910 SM00382 ATPases associated with a variety of cellular activities AL539_19910 SM00959 Rho termination factor, N-terminal domain AL539_19920 SM00487 DEAD-like helicases superfamily AL539_19920 SM00490 helicase superfamily c-terminal domain AL539_19945 SM00341 Helicase and RNase D C-terminal AL539_19945 SM00487 DEAD-like helicases superfamily AL539_19945 SM00490 helicase superfamily c-terminal domain AL539_19945 SM00956 AL539_19945 AL539_19955 SM00342 helix_turn_helix, arabinose operon control protein AL539_20020 SM00876 Biotin and Thiamin Synthesis associated domain AL539_20210 SM01001 AIR carboxylase AL539_20235 SM00257 Lysin motif AL539_20305 SM00563 Phosphate acyltransferases AL539_20315 SM00382 ATPases associated with a variety of cellular activities AL539_20355 SM00062 Bacterial periplasmic substrate-binding proteins AL539_20375 SM00382 ATPases associated with a variety of cellular activities AL539_20415 SM00470 ParB-like nuclease domain AL539_20430 SM01228 AL539_20430 AL539_20455 SM01234 AL539_20455 AL539_20470 SM00382 ATPases associated with a variety of cellular activities AL539_20480 SM00062 Bacterial periplasmic substrate-binding proteins AL539_20480 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_20490 SM00382 ATPases associated with a variety of cellular activities AL539_20490 SM00760 Bacterial dnaA protein helix-turn-helix domain AL539_20495 SM00480 DNA polymerase III beta subunit AL539_20505 SM00387 Histidine kinase-like ATPases AL539_20505 SM00433 TopoisomeraseII AL539_20535 SM00642 Alpha-amylase domain AL539_20575 SM00829 Enoylreductase AL539_20715 SM00382 ATPases associated with a variety of cellular activities AL539_20745 SM00354 helix_turn _helix lactose operon repressor AL539_20810 SM00344 helix_turn_helix ASNC type AL539_20815 SM00052 Putative diguanylate phosphodiesterase AL539_20815 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_20815 SM00091 PAS domain AL539_20815 SM00267 diguanylate cyclase AL539_20855 SM00382 ATPases associated with a variety of cellular activities AL539_20860 SM00749 bacterial OsmY and nodulation domain AL539_20880 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL539_20880 SM00195 Dual specificity phosphatase, catalytic domain AL539_20880 SM00404 Protein tyrosine phosphatase, catalytic domain motif AL539_20915 SM00052 Putative diguanylate phosphodiesterase AL539_20915 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL539_20915 SM00091 PAS domain AL539_20915 SM00267 diguanylate cyclase AL539_20980 SM01004 Delta-aminolevulinic acid dehydratase AL539_20995 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL539_20995 SM00474 3'-5' exonuclease AL539_20995 SM00475 5'-3' exonuclease AL539_20995 SM00482 DNA polymerase A domain AL539_21030 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_21040 SM00052 Putative diguanylate phosphodiesterase AL539_21040 SM00267 diguanylate cyclase AL539_21040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_21045 SM00382 ATPases associated with a variety of cellular activities AL539_21045 SM00448 cheY-homologous receiver domain AL539_21050 SM00091 PAS domain AL539_21050 SM00387 Histidine kinase-like ATPases AL539_21050 SM00388 His Kinase A (phosphoacceptor) domain AL539_21060 SM01230 AL539_21060 AL539_21110 SM00363 S4 RNA-binding domain AL539_21125 SM00382 ATPases associated with a variety of cellular activities AL539_21205 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_21205 SM00732 Likely ribonuclease with RNase H fold. AL539_21225 SM00448 cheY-homologous receiver domain AL539_21225 SM00862 Transcriptional regulatory protein, C terminal AL539_21230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_21230 SM00387 Histidine kinase-like ATPases AL539_21230 SM00388 His Kinase A (phosphoacceptor) domain AL539_21240 SM00487 DEAD-like helicases superfamily AL539_21240 SM00490 helicase superfamily c-terminal domain AL539_21250 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_21250 SM00954 Region found in RelA / SpoT proteins AL539_21255 SM01409 AL539_21255 AL539_21260 SM00072 Guanylate kinase homologues. AL539_21270 SM00028 Tetratricopeptide repeats AL539_21325 SM00382 ATPases associated with a variety of cellular activities AL539_21330 SM00382 ATPases associated with a variety of cellular activities AL539_21380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_21380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_21380 SM01049 AL539_21380 AL539_21405 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AL539_21405 SM01232 AL539_21405 AL539_21425 SM00672 Putative lipopolysaccharide-modifying enzyme. AL539_21620 SM00984 UDP binding domain AL539_21625 SM00849 Metallo-beta-lactamase superfamily AL539_21625 SM01027 Beta-Casp domain AL539_21715 SM00382 ATPases associated with a variety of cellular activities AL539_21715 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_21730 SM00354 helix_turn _helix lactose operon repressor AL539_21735 SM00487 DEAD-like helicases superfamily AL539_21735 SM00490 helicase superfamily c-terminal domain AL539_21750 SM01403 AL539_21750 AL539_21770 SM01382 AL539_21770 AL539_21770 SM01383 AL539_21770 AL539_21785 SM00322 K homology RNA-binding domain AL539_21805 SM01374 AL539_21805 AL539_21810 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL539_21875 SM00363 S4 RNA-binding domain AL539_21875 SM01390 AL539_21875 AL539_21880 SM00662 RNA polymerases D AL539_21910 SM00487 DEAD-like helicases superfamily AL539_21910 SM00490 helicase superfamily c-terminal domain AL539_21965 SM00382 ATPases associated with a variety of cellular activities AL539_22025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_22045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_22095 SM00382 ATPases associated with a variety of cellular activities AL539_22195 SM00650 Ribosomal RNA adenine dimethylases AL539_22215 SM00271 DnaJ molecular chaperone homology domain AL539_22235 SM01329 AL539_22235 AL539_22240 SM00917 LeuA allosteric (dimerisation) domain AL539_22255 SM00014 Acid phosphatase homologues AL539_22285 SM00267 diguanylate cyclase AL539_22290 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL539_22300 SM00420 helix_turn_helix, Deoxyribose operon repressor AL539_22300 SM01134 AL539_22300 AL539_22345 SM00487 DEAD-like helicases superfamily AL539_22370 SM01120 AL539_22370 AL539_22400 SM00563 Phosphate acyltransferases AL539_22435 SM00357 Cold shock protein domain AL539_22450 SM00357 Cold shock protein domain AL539_22515 SM00530 Helix-turn-helix XRE-family like proteins AL539_22530 SM00400 zinc finger AL539_22530 SM00493 AL539_22530 AL539_22530 SM00766 DNA primase DnaG DnaB-binding AL539_22555 SM01207 AL539_22555 AL539_22560 SM00905 Dihydroneopterin aldolase AL539_22580 SM00382 ATPases associated with a variety of cellular activities AL539_22595 SM00287 Bacterial SH3 domain homologues AL539_22610 SM00880 AL539_22610 AL539_22610 SM01118 AL539_22610 AL539_22620 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_22660 SM00387 Histidine kinase-like ATPases AL539_22660 SM00433 TopoisomeraseII AL539_22665 SM00434 DNA Topoisomerase IV AL539_22670 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL539_22675 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL539_22735 SM00749 bacterial OsmY and nodulation domain AL539_22825 SM00842 Cell division protein FtsA AL539_22830 SM00864 Tubulin/FtsZ family, GTPase domain AL539_22830 SM00865 Tubulin/FtsZ family, C-terminal domain AL539_22845 SM00957 SecA DEAD-like domain AL539_22845 SM00958 SecA preprotein cross-linking domain AL539_22860 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AL539_22865 SM00851 MGS-like domain AL539_22865 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL539_22935 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_22940 SM00091 PAS domain AL539_22940 SM00267 diguanylate cyclase AL539_22945 SM00073 Histidine Phosphotransfer domain AL539_22945 SM00091 PAS domain AL539_22945 SM00387 Histidine kinase-like ATPases AL539_22945 SM00388 His Kinase A (phosphoacceptor) domain AL539_22945 SM00448 cheY-homologous receiver domain AL539_22955 SM00448 cheY-homologous receiver domain AL539_22955 SM00862 Transcriptional regulatory protein, C terminal AL539_23010 SM00518 AP endonuclease family 2 AL539_23020 SM00986 Uracil DNA glycosylase superfamily AL539_23020 SM00987 UreE urease accessory protein, C-terminal domain AL539_23045 SM00487 DEAD-like helicases superfamily AL539_23045 SM00490 helicase superfamily c-terminal domain AL539_23090 SM00382 ATPases associated with a variety of cellular activities AL539_23110 SM00927 DNA mismatch repair enzyme MutH AL539_23120 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL539_23140 SM01154 AL539_23140 AL539_23155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL539_23170 SM00904 Riboflavin kinase AL539_23195 SM00226 Low molecular weight phosphatase family AL539_23200 SM00448 cheY-homologous receiver domain AL539_23200 SM00850 LytTr DNA-binding domain AL539_23245 SM00830 Chorismate mutase type II AL539_23260 SM00382 ATPases associated with a variety of cellular activities AL539_23280 SM00830 Chorismate mutase type II AL539_23290 SM00062 Bacterial periplasmic substrate-binding proteins AL539_23300 SM00363 S4 RNA-binding domain AL539_23310 SM00382 ATPases associated with a variety of cellular activities AL539_23310 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_23395 SM00448 cheY-homologous receiver domain AL539_23395 SM00862 Transcriptional regulatory protein, C terminal AL539_23400 SM00091 PAS domain AL539_23400 SM00387 Histidine kinase-like ATPases AL539_23400 SM00388 His Kinase A (phosphoacceptor) domain AL539_23430 SM00382 ATPases associated with a variety of cellular activities AL539_23470 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_23475 SM00020 Trypsin-like serine protease AL539_23490 SM01323 AL539_23490 AL539_23545 SM00271 DnaJ molecular chaperone homology domain AL539_23570 SM00562 AL539_23570 AL539_23580 SM00530 Helix-turn-helix XRE-family like proteins AL539_23600 SM00564 beta-propeller repeat AL539_23605 SM00382 ATPases associated with a variety of cellular activities AL539_23625 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_23625 SM01240 AL539_23625 AL539_23640 SM00495 Chitin-binding domain type 3 AL539_23745 SM00052 Putative diguanylate phosphodiesterase AL539_23745 SM00267 diguanylate cyclase AL539_23750 SM00342 helix_turn_helix, arabinose operon control protein AL539_23755 SM00052 Putative diguanylate phosphodiesterase AL539_23775 SM00267 diguanylate cyclase AL539_23780 SM00530 Helix-turn-helix XRE-family like proteins AL539_23785 SM00873 B3/4 domain AL539_23875 SM00857 Resolvase, N terminal domain AL539_23885 SM00487 DEAD-like helicases superfamily AL539_23995 SM00271 DnaJ molecular chaperone homology domain AL539_24040 SM00062 Bacterial periplasmic substrate-binding proteins AL539_24045 SM01211 AL539_24045 AL539_24100 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL539_24150 SM00861 Transketolase, pyrimidine binding domain AL539_24175 SM00981 AL539_24175 AL539_24200 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL539_24200 SM00475 5'-3' exonuclease AL539_24210 SM00267 diguanylate cyclase AL539_24215 SM00028 Tetratricopeptide repeats AL539_24245 SM00382 ATPases associated with a variety of cellular activities AL539_24245 SM00930 AL539_24245 AL539_24255 SM00354 helix_turn _helix lactose operon repressor AL539_24265 SM00642 Alpha-amylase domain AL539_24275 SM00862 Transcriptional regulatory protein, C terminal AL539_24290 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_24305 SM00936 Penicillin-binding protein 5, C-terminal domain AL539_24360 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_24360 SM01091 Transporter associated domain AL539_24375 SM00729 Elongator protein 3, MiaB family, Radical SAM AL539_24505 SM01400 AL539_24505 AL539_24525 SM00937 AL539_24525 AL539_24560 SM00363 S4 RNA-binding domain AL539_24565 SM00463 Small MutS-related domain AL539_24590 SM01081 Putative carbohydrate binding domain AL539_24670 SM00858 AL539_24670 AL539_24675 SM00260 Two component signalling adaptor domain AL539_24675 SM00448 cheY-homologous receiver domain AL539_24680 SM00138 Methyltransferase, chemotaxis proteins AL539_24725 SM00047 Lysozyme subfamily 2 AL539_24790 SM00771 ZipA, C-terminal domain (FtsZ-binding) AL539_24795 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL539_24795 SM00292 breast cancer carboxy-terminal domain AL539_24795 SM00532 Ligase N family AL539_24815 SM00244 prohibitin homologues AL539_24850 SM00938 Nitrogen regulatory protein P-II AL539_24855 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_24885 SM00862 Transcriptional regulatory protein, C terminal AL539_24890 SM00387 Histidine kinase-like ATPases AL539_24910 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL539_25020 SM00861 Transketolase, pyrimidine binding domain AL539_25035 SM00881 CoA binding domain AL539_25045 SM00382 ATPases associated with a variety of cellular activities AL539_25055 SM00342 helix_turn_helix, arabinose operon control protein AL539_25060 SM00899 AL539_25060 AL539_25085 SM00836 DALR anticodon binding domain AL539_25085 SM01016 Arginyl tRNA synthetase N terminal dom AL539_25105 SM00487 DEAD-like helicases superfamily AL539_25105 SM00491 AL539_25105 AL539_25135 SM00474 3'-5' exonuclease AL539_25185 SM00825 Beta-ketoacyl synthase AL539_25190 SM00822 AL539_25190 AL539_25200 SM00825 Beta-ketoacyl synthase AL539_25260 SM00563 Phosphate acyltransferases AL539_25290 SM00487 DEAD-like helicases superfamily AL539_25290 SM00490 helicase superfamily c-terminal domain AL539_25340 SM00382 ATPases associated with a variety of cellular activities AL539_25340 SM00448 cheY-homologous receiver domain AL539_25345 SM00387 Histidine kinase-like ATPases AL539_25345 SM00388 His Kinase A (phosphoacceptor) domain AL539_25365 SM00382 ATPases associated with a variety of cellular activities AL539_25365 SM00994 ClpX C4-type zinc finger AL539_25365 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_25370 SM00382 ATPases associated with a variety of cellular activities AL539_25370 SM00464 Found in ATP-dependent protease La (LON) AL539_25375 SM00411 bacterial (prokaryotic) histone like domain AL539_25385 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL539_25395 SM01144 AL539_25395 AL539_25400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_25405 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL539_25435 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL539_25455 SM00563 Phosphate acyltransferases AL539_25465 SM00978 AL539_25465 AL539_25530 SM00344 helix_turn_helix ASNC type AL539_25560 SM00062 Bacterial periplasmic substrate-binding proteins AL539_25560 SM00267 diguanylate cyclase AL539_25575 SM00116 Domain in cystathionine beta-synthase and other proteins. AL539_25595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL539_25595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL539_25645 SM00487 DEAD-like helicases superfamily AL539_25645 SM00490 helicase superfamily c-terminal domain AL539_25645 SM00982 AL539_25645 AL539_25645 SM01058 CarD-like/TRCF domain AL539_25660 SM00382 ATPases associated with a variety of cellular activities AL539_25675 SM00849 Metallo-beta-lactamase superfamily AL539_25680 SM00382 ATPases associated with a variety of cellular activities AL539_25710 SM00763 PrkA AAA domain AL539_25760 SM00382 ATPases associated with a variety of cellular activities AL539_25765 SM00062 Bacterial periplasmic substrate-binding proteins AL539_25765 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL539_25780 SM01276 AL539_25780 AL539_25805 SM00491 AL539_25805 AL539_25830 SM00357 Cold shock protein domain AL539_25840 SM00382 ATPases associated with a variety of cellular activities AL539_25840 SM01086 C-terminal, D2-small domain, of ClpB protein AL539_25845 SM00316 Ribosomal protein S1-like RNA-binding domain AL539_25875 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL539_25875 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL539_25875 SM00493 AL539_25875 AL539_25910 SM00354 helix_turn _helix lactose operon repressor AL539_25920 SM00448 cheY-homologous receiver domain AL539_25920 SM00862 Transcriptional regulatory protein, C terminal AL539_26005 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL539_26010 SM00382 ATPases associated with a variety of cellular activities AL539_26065 SM00028 Tetratricopeptide repeats