locus-tag class description NAL94_00015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NAL94_00020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_00020 PF03466 LysR substrate binding domain NAL94_00025 PF00781 Diacylglycerol kinase catalytic domain NAL94_00030 PF04076 Bacterial OB fold (BOF) protein NAL94_00040 PF18081 Fanconi anemia-associated nuclease SAP domain NAL94_00040 PF08774 VRR-NUC domain NAL94_00055 PF03606 C4-dicarboxylate anaerobic carrier NAL94_00065 PF00583 Acetyltransferase (GNAT) family NAL94_00065 PF00814 Glycoprotease family NAL94_00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_00075 PF00072 Response regulator receiver domain NAL94_00080 PF00155 Aminotransferase class I and II NAL94_00085 PF01926 50S ribosome-binding GTPase NAL94_00125 PF04002 RadC-like JAB domain NAL94_00160 PF18766 SWI2/SNF2 ATPase NAL94_00160 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) NAL94_00160 PF11867 Domain of unknown function (DUF3387) NAL94_00170 PF00005 ABC transporter NAL94_00180 PF00589 Phage integrase family NAL94_00180 PF13356 Arm DNA-binding domain NAL94_00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_00185 PF00512 His Kinase A (phospho-acceptor) domain NAL94_00185 PF09456 RcsC Alpha-Beta-Loop (ABL) NAL94_00185 PF00072 Response regulator receiver domain NAL94_00190 PF03707 Bacterial signalling protein N terminal repeat NAL94_00190 PF13188 PAS domain NAL94_00190 PF00990 Diguanylate cyclase, GGDEF domain NAL94_00190 PF00563 EAL domain NAL94_00195 PF00072 Response regulator receiver domain NAL94_00195 PF00196 Bacterial regulatory proteins, luxR family NAL94_00200 PF00990 Diguanylate cyclase, GGDEF domain NAL94_00210 PF00072 Response regulator receiver domain NAL94_00210 PF00196 Bacterial regulatory proteins, luxR family NAL94_00215 PF01584 CheW-like domain NAL94_00215 PF00072 Response regulator receiver domain NAL94_00220 PF08334 Type II secretion system (T2SS), protein G NAL94_00220 PF07963 Prokaryotic N-terminal methylation motif NAL94_00230 PF00892 EamA-like transporter family NAL94_00250 PF00893 Small Multidrug Resistance protein NAL94_00255 PF00892 EamA-like transporter family NAL94_00270 PF00171 Aldehyde dehydrogenase family NAL94_00280 PF01645 Conserved region in glutamate synthase NAL94_00280 PF13187 4Fe-4S dicluster domain NAL94_00285 PF00141 Peroxidase NAL94_00290 PF09722 Protein of unknown function (DUF2384) NAL94_00300 PF01757 Acyltransferase family NAL94_00310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NAL94_00315 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NAL94_00335 PF01769 Divalent cation transporter NAL94_00335 PF03448 MgtE intracellular N domain NAL94_00335 PF00571 CBS domain NAL94_00370 PF01327 Polypeptide deformylase NAL94_00375 PF09278 MerR, DNA binding NAL94_00375 PF00376 MerR family regulatory protein NAL94_00385 PF02253 Phospholipase A1 NAL94_00405 PF00664 ABC transporter transmembrane region NAL94_00405 PF00005 ABC transporter NAL94_00410 PF11490 DNA polymerase III polC-type N-terminus II NAL94_00410 PF07733 Bacterial DNA polymerase III alpha NTPase domain NAL94_00410 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NAL94_00410 PF14579 Helix-hairpin-helix motif NAL94_00410 PF02811 PHP domain NAL94_00410 PF00929 Exonuclease NAL94_00435 PF12833 Helix-turn-helix domain NAL94_00440 PF02627 Carboxymuconolactone decarboxylase family NAL94_00445 PF00892 EamA-like transporter family NAL94_00450 PF03466 LysR substrate binding domain NAL94_00450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_00455 PF16123 Hydroxyacylglutathione hydrolase C-terminus NAL94_00455 PF00753 Metallo-beta-lactamase superfamily NAL94_00460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NAL94_00465 PF02347 Glycine cleavage system P-protein NAL94_00470 PF01597 Glycine cleavage H-protein NAL94_00475 PF00464 Serine hydroxymethyltransferase NAL94_00485 PF01571 Aminomethyltransferase folate-binding domain NAL94_00485 PF08669 Glycine cleavage T-protein C-terminal barrel domain NAL94_00505 PF00873 AcrB/AcrD/AcrF family NAL94_00515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NAL94_00515 PF02378 Phosphotransferase system, EIIC NAL94_00520 PF00294 pfkB family carbohydrate kinase NAL94_00525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NAL94_00525 PF00381 PTS HPr component phosphorylation site NAL94_00530 PF00356 Bacterial regulatory proteins, lacI family NAL94_00530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NAL94_00545 PF00563 EAL domain NAL94_00545 PF01590 GAF domain NAL94_00545 PF00990 Diguanylate cyclase, GGDEF domain NAL94_00545 PF00989 PAS fold NAL94_00550 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_00555 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_00560 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_00565 PF00005 ABC transporter NAL94_00575 PF00465 Iron-containing alcohol dehydrogenase NAL94_00580 PF06719 AraC-type transcriptional regulator N-terminus NAL94_00580 PF12833 Helix-turn-helix domain NAL94_00585 PF06483 Chitinase C NAL94_00585 PF00704 Glycosyl hydrolases family 18 NAL94_00590 PF00483 Nucleotidyl transferase NAL94_00595 PF01268 Formate--tetrahydrofolate ligase NAL94_00600 PF00294 pfkB family carbohydrate kinase NAL94_00615 PF13419 Haloacid dehalogenase-like hydrolase NAL94_00620 PF12729 Four helix bundle sensory module for signal transduction NAL94_00620 PF00672 HAMP domain NAL94_00620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_00630 PF04336 Acyl carrier protein phosphodiesterase NAL94_00635 PF00270 DEAD/DEAH box helicase NAL94_00635 PF00271 Helicase conserved C-terminal domain NAL94_00655 PF01292 Prokaryotic cytochrome b561 NAL94_00660 PF04264 YceI-like domain NAL94_00665 PF01226 Formate/nitrite transporter NAL94_00670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_00670 PF03466 LysR substrate binding domain NAL94_00675 PF06496 Protein of unknown function (DUF1097) NAL94_00680 PF11398 Protein of unknown function (DUF2813) NAL94_00685 PF02872 5'-nucleotidase, C-terminal domain NAL94_00685 PF00149 Calcineurin-like phosphoesterase NAL94_00690 PF03741 Integral membrane protein TerC family NAL94_00710 PF12262 Bacterial virulence factor lipase N-terminal NAL94_00715 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NAL94_00730 PF03061 Thioesterase superfamily NAL94_00740 PF12793 Sugar transport-related sRNA regulator N-term NAL94_00740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_00765 PF01556 DnaJ C terminal domain NAL94_00765 PF00684 DnaJ central domain NAL94_00765 PF00226 DnaJ domain NAL94_00775 PF00990 Diguanylate cyclase, GGDEF domain NAL94_00775 PF00563 EAL domain NAL94_00775 PF03707 Bacterial signalling protein N terminal repeat NAL94_00775 PF13188 PAS domain NAL94_00780 PF12241 Trans-2-enoyl-CoA reductase catalytic region NAL94_00780 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAL94_00780 PF07055 Enoyl reductase FAD binding domain NAL94_00785 PF13472 GDSL-like Lipase/Acylhydrolase family NAL94_00790 PF00005 ABC transporter NAL94_00805 PF02626 Carboxyltransferase domain, subdomain A and B NAL94_00810 PF02682 Carboxyltransferase domain, subdomain C and D NAL94_00815 PF03746 LamB/YcsF family NAL94_00820 PF00990 Diguanylate cyclase, GGDEF domain NAL94_00820 PF13426 PAS domain NAL94_00820 PF08448 PAS fold NAL94_00820 PF08447 PAS fold NAL94_00820 PF05231 MASE1 NAL94_00820 PF00563 EAL domain NAL94_00825 PF16363 GDP-mannose 4,6 dehydratase NAL94_00830 PF00593 TonB dependent receptor NAL94_00830 PF04886 PT repeat NAL94_00830 PF07715 TonB-dependent Receptor Plug Domain NAL94_00835 PF03466 LysR substrate binding domain NAL94_00835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_00840 PF00583 Acetyltransferase (GNAT) family NAL94_00840 PF13380 CoA binding domain NAL94_00840 PF13607 Succinyl-CoA ligase like flavodoxin domain NAL94_00845 PF05036 Sporulation related domain NAL94_00850 PF07478 D-ala D-ala ligase C-terminus NAL94_00850 PF01820 D-ala D-ala ligase N-terminus NAL94_00860 PF01253 Translation initiation factor SUI1 NAL94_00865 PF03466 LysR substrate binding domain NAL94_00865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_00875 PF00582 Universal stress protein family NAL94_00880 PF03701 Uncharacterised protein family (UPF0181) NAL94_00895 PF00486 Transcriptional regulatory protein, C terminal NAL94_00895 PF00072 Response regulator receiver domain NAL94_00905 PF02233 NAD(P) transhydrogenase beta subunit NAL94_00910 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch NAL94_00910 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NAL94_00910 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NAL94_00925 PF00990 Diguanylate cyclase, GGDEF domain NAL94_00930 PF00563 EAL domain NAL94_00930 PF00360 Phytochrome region NAL94_00930 PF00990 Diguanylate cyclase, GGDEF domain NAL94_00930 PF01590 GAF domain NAL94_00940 PF03459 TOBE domain NAL94_00940 PF00005 ABC transporter NAL94_00945 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_00955 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NAL94_00955 PF07685 CobB/CobQ-like glutamine amidotransferase domain NAL94_00960 PF04076 Bacterial OB fold (BOF) protein NAL94_00970 PF18030 RimK PreATP-grasp domain NAL94_00970 PF08443 RimK-like ATP-grasp domain NAL94_00975 PF00155 Aminotransferase class I and II NAL94_00980 PF12852 Cupin NAL94_00980 PF12833 Helix-turn-helix domain NAL94_00985 PF01554 MatE NAL94_00995 PF03477 ATP cone domain NAL94_00995 PF13597 Anaerobic ribonucleoside-triphosphate reductase NAL94_01010 PF04143 Sulphur transport NAL94_01020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAL94_01020 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_01025 PF01177 Asp/Glu/Hydantoin racemase NAL94_01030 PF02567 Phenazine biosynthesis-like protein NAL94_01045 PF00384 Molybdopterin oxidoreductase NAL94_01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_01050 PF03466 LysR substrate binding domain NAL94_01055 PF02634 FdhD/NarQ family NAL94_01060 PF07690 Major Facilitator Superfamily NAL94_01065 PF00196 Bacterial regulatory proteins, luxR family NAL94_01065 PF00072 Response regulator receiver domain NAL94_01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_01070 PF05231 MASE1 NAL94_01070 PF07730 Histidine kinase NAL94_01075 PF07690 Major Facilitator Superfamily NAL94_01080 PF01238 Phosphomannose isomerase type I NAL94_01100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NAL94_01100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NAL94_01105 PF00085 Thioredoxin NAL94_01110 PF07690 Major Facilitator Superfamily NAL94_01115 PF11756 Nitrous oxide-stimulated promoter NAL94_01120 PF13302 Acetyltransferase (GNAT) domain NAL94_01130 PF07715 TonB-dependent Receptor Plug Domain NAL94_01130 PF00593 TonB dependent receptor NAL94_01140 PF03605 Anaerobic c4-dicarboxylate membrane transporter NAL94_01155 PF10414 Sirohaem synthase dimerisation region NAL94_01155 PF14824 Sirohaem biosynthesis protein central NAL94_01155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NAL94_01160 PF01226 Formate/nitrite transporter NAL94_01165 PF13806 Rieske-like [2Fe-2S] domain NAL94_01170 PF04324 BFD-like [2Fe-2S] binding domain NAL94_01170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NAL94_01170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NAL94_01170 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_01170 PF18267 Rubredoxin NAD+ reductase C-terminal domain NAL94_01175 PF01272 Transcription elongation factor, GreA/GreB, C-term NAL94_01175 PF14760 Rnk N-terminus NAL94_01180 PF00563 EAL domain NAL94_01180 PF00990 Diguanylate cyclase, GGDEF domain NAL94_01180 PF03707 Bacterial signalling protein N terminal repeat NAL94_01190 PF00563 EAL domain NAL94_01190 PF00990 Diguanylate cyclase, GGDEF domain NAL94_01190 PF03707 Bacterial signalling protein N terminal repeat NAL94_01195 PF00296 Luciferase-like monooxygenase NAL94_01225 PF09154 Domain of unknown function (DUF1939) NAL94_01225 PF00128 Alpha amylase, catalytic domain NAL94_01240 PF00672 HAMP domain NAL94_01240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_01245 PF00842 Alanine racemase, C-terminal domain NAL94_01245 PF01168 Alanine racemase, N-terminal domain NAL94_01260 PF09330 D-lactate dehydrogenase, membrane binding NAL94_01260 PF01565 FAD binding domain NAL94_01265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_01265 PF03466 LysR substrate binding domain NAL94_01280 PF05762 VWA domain containing CoxE-like protein NAL94_01285 PF07728 AAA domain (dynein-related subfamily) NAL94_01285 PF17868 AAA lid domain NAL94_01285 PF12592 Protein of unknown function (DUF3763) NAL94_01295 PF01212 Beta-eliminating lyase NAL94_01305 PF03606 C4-dicarboxylate anaerobic carrier NAL94_01315 PF08212 Lipocalin-like domain NAL94_01325 PF13476 AAA domain NAL94_01330 PF00149 Calcineurin-like phosphoesterase NAL94_01330 PF12320 Type 5 capsule protein repressor C-terminal domain NAL94_01345 PF06715 Gp5 C-terminal repeat (3 copies) NAL94_01345 PF04717 Type VI secretion system, phage-baseplate injector NAL94_01355 PF00004 ATPase family associated with various cellular activities (AAA) NAL94_01355 PF07724 AAA domain (Cdc48 subfamily) NAL94_01355 PF10431 C-terminal, D2-small domain, of ClpB protein NAL94_01355 PF17871 AAA lid domain NAL94_01365 PF05947 Type VI secretion system, TssF NAL94_01380 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NAL94_01385 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NAL94_01390 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 NAL94_01410 PF06761 Intracellular multiplication and human macrophage-killing NAL94_01410 PF14331 ImcF-related N-terminal domain NAL94_01410 PF06744 Type VI secretion protein IcmF C-terminal NAL94_01415 PF13677 Membrane MotB of proton-channel complex MotA/MotB NAL94_01415 PF00691 OmpA family NAL94_01435 PF00069 Protein kinase domain NAL94_01435 PF03793 PASTA domain NAL94_01455 PF00211 Adenylate and Guanylate cyclase catalytic domain NAL94_01455 PF00072 Response regulator receiver domain NAL94_01485 PF04324 BFD-like [2Fe-2S] binding domain NAL94_01485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NAL94_01485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NAL94_01485 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_01485 PF13806 Rieske-like [2Fe-2S] domain NAL94_01485 PF18267 Rubredoxin NAD+ reductase C-terminal domain NAL94_01490 PF00005 ABC transporter NAL94_01495 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_01500 PF00005 ABC transporter NAL94_01505 PF03861 ANTAR domain NAL94_01505 PF08376 Nitrate and nitrite sensing NAL94_01510 PF01738 Dienelactone hydrolase family NAL94_01515 PF02885 Glycosyl transferase family, helical bundle domain NAL94_01515 PF00591 Glycosyl transferase family, a/b domain NAL94_01520 PF10414 Sirohaem synthase dimerisation region NAL94_01520 PF14824 Sirohaem biosynthesis protein central NAL94_01520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NAL94_01525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NAL94_01525 PF00384 Molybdopterin oxidoreductase NAL94_01525 PF01568 Molydopterin dinucleotide binding domain NAL94_01535 PF03222 Tryptophan/tyrosine permease family NAL94_01540 PF00990 Diguanylate cyclase, GGDEF domain NAL94_01550 PF01483 Proprotein convertase P-domain NAL94_01550 PF00082 Subtilase family NAL94_01570 PF00072 Response regulator receiver domain NAL94_01570 PF00486 Transcriptional regulatory protein, C terminal NAL94_01595 PF04314 Copper chaperone PCu(A)C NAL94_01600 PF00012 Hsp70 protein NAL94_01620 PF00676 Dehydrogenase E1 component NAL94_01625 PF02779 Transketolase, pyrimidine binding domain NAL94_01625 PF02780 Transketolase, C-terminal domain NAL94_01630 PF00364 Biotin-requiring enzyme NAL94_01630 PF02817 e3 binding domain NAL94_01630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NAL94_01635 PF01012 Electron transfer flavoprotein domain NAL94_01635 PF00766 Electron transfer flavoprotein FAD-binding domain NAL94_01645 PF03466 LysR substrate binding domain NAL94_01645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_01660 PF03466 LysR substrate binding domain NAL94_01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_01670 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_01675 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_01680 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_01685 PF00005 ABC transporter NAL94_01715 PF02028 BCCT, betaine/carnitine/choline family transporter NAL94_01725 PF00171 Aldehyde dehydrogenase family NAL94_01740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NAL94_01740 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_01745 PF01040 UbiA prenyltransferase family NAL94_01755 PF00510 Cytochrome c oxidase subunit III NAL94_01760 PF00115 Cytochrome C and Quinol oxidase polypeptide I NAL94_01765 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NAL94_01765 PF06481 COX Aromatic Rich Motif NAL94_01775 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAL94_01775 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NAL94_01780 PF00378 Enoyl-CoA hydratase/isomerase NAL94_01785 PF00378 Enoyl-CoA hydratase/isomerase NAL94_01790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NAL94_01790 PF02770 Acyl-CoA dehydrogenase, middle domain NAL94_01790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NAL94_01795 PF00171 Aldehyde dehydrogenase family NAL94_01800 PF02803 Thiolase, C-terminal domain NAL94_01800 PF00108 Thiolase, N-terminal domain NAL94_01805 PF00376 MerR family regulatory protein NAL94_01805 PF09278 MerR, DNA binding NAL94_01810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NAL94_01810 PF02770 Acyl-CoA dehydrogenase, middle domain NAL94_01810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NAL94_01815 PF01039 Carboxyl transferase domain NAL94_01820 PF00378 Enoyl-CoA hydratase/isomerase NAL94_01825 PF00682 HMGL-like NAL94_01835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_01835 PF08447 PAS fold NAL94_01835 PF13426 PAS domain NAL94_01845 PF01914 MarC family integral membrane protein NAL94_01850 PF01258 Prokaryotic dksA/traR C4-type zinc finger NAL94_01855 PF07683 Cobalamin synthesis protein cobW C-terminal domain NAL94_01855 PF02492 CobW/HypB/UreG, nucleotide-binding domain NAL94_01860 PF07683 Cobalamin synthesis protein cobW C-terminal domain NAL94_01860 PF02492 CobW/HypB/UreG, nucleotide-binding domain NAL94_01865 PF01476 LysM domain NAL94_01865 PF08525 Opacity-associated protein A N-terminal motif NAL94_01865 PF01551 Peptidase family M23 NAL94_01870 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NAL94_01875 PF07683 Cobalamin synthesis protein cobW C-terminal domain NAL94_01875 PF02492 CobW/HypB/UreG, nucleotide-binding domain NAL94_01880 PF00132 Bacterial transferase hexapeptide (six repeats) NAL94_01885 PF01979 Amidohydrolase family NAL94_01890 PF01475 Ferric uptake regulator family NAL94_01905 PF01925 Sulfite exporter TauE/SafE NAL94_01920 PF12146 Serine aminopeptidase, S33 NAL94_01925 PF12146 Serine aminopeptidase, S33 NAL94_01930 PF03466 LysR substrate binding domain NAL94_01930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_01935 PF00871 Acetokinase family NAL94_01950 PF00271 Helicase conserved C-terminal domain NAL94_01950 PF00270 DEAD/DEAH box helicase NAL94_01950 PF03880 DbpA RNA binding domain NAL94_01955 PF00575 S1 RNA binding domain NAL94_01955 PF08206 Ribonuclease B OB domain NAL94_01955 PF00773 RNB domain NAL94_01960 PF12833 Helix-turn-helix domain NAL94_01970 PF12849 PBP superfamily domain NAL94_01975 PF01575 MaoC like domain NAL94_02030 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) NAL94_02035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_02035 PF00672 HAMP domain NAL94_02035 PF12729 Four helix bundle sensory module for signal transduction NAL94_02040 PF00005 ABC transporter NAL94_02045 PF00563 EAL domain NAL94_02045 PF12792 CSS motif domain associated with EAL NAL94_02065 PF00271 Helicase conserved C-terminal domain NAL94_02065 PF00270 DEAD/DEAH box helicase NAL94_02070 PF02492 CobW/HypB/UreG, nucleotide-binding domain NAL94_02070 PF07683 Cobalamin synthesis protein cobW C-terminal domain NAL94_02080 PF01470 Pyroglutamyl peptidase NAL94_02090 PF00313 'Cold-shock' DNA-binding domain NAL94_02095 PF00291 Pyridoxal-phosphate dependent enzyme NAL94_02105 PF09905 DNA-binding protein VF530 NAL94_02110 PF00270 DEAD/DEAH box helicase NAL94_02110 PF00271 Helicase conserved C-terminal domain NAL94_02120 PF01925 Sulfite exporter TauE/SafE NAL94_02130 PF01810 LysE type translocator NAL94_02145 PF00392 Bacterial regulatory proteins, gntR family NAL94_02145 PF07729 FCD domain NAL94_02150 PF01810 LysE type translocator NAL94_02160 PF12843 Putative quorum-sensing-regulated virulence factor NAL94_02180 PF01329 Pterin 4 alpha carbinolamine dehydratase NAL94_02185 PF00351 Biopterin-dependent aromatic amino acid hydroxylase NAL94_02190 PF13193 AMP-binding enzyme C-terminal domain NAL94_02190 PF00501 AMP-binding enzyme NAL94_02200 PF03466 LysR substrate binding domain NAL94_02200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_02210 PF00892 EamA-like transporter family NAL94_02225 PF00465 Iron-containing alcohol dehydrogenase NAL94_02230 PF07995 Glucose / Sorbosone dehydrogenase NAL94_02240 PF00210 Ferritin-like domain NAL94_02245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_02245 PF17200 Single Cache domain 2 NAL94_02245 PF00672 HAMP domain NAL94_02265 PF13533 Biotin-lipoyl like NAL94_02270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_02270 PF00072 Response regulator receiver domain NAL94_02275 PF02321 Outer membrane efflux protein NAL94_02280 PF00005 ABC transporter NAL94_02280 PF00664 ABC transporter transmembrane region NAL94_02285 PF00005 ABC transporter NAL94_02285 PF00664 ABC transporter transmembrane region NAL94_02295 PF04539 Sigma-70 region 3 NAL94_02295 PF00140 Sigma-70 factor, region 1.2 NAL94_02295 PF04545 Sigma-70, region 4 NAL94_02295 PF04542 Sigma-70 region 2 NAL94_02300 PF00990 Diguanylate cyclase, GGDEF domain NAL94_02305 PF03889 Alternative ribosome-rescue factor A NAL94_02310 PF00313 'Cold-shock' DNA-binding domain NAL94_02330 PF00691 OmpA family NAL94_02330 PF05736 OprF membrane domain NAL94_02340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NAL94_02340 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NAL94_02345 PF01040 UbiA prenyltransferase family NAL94_02350 PF02628 Cytochrome oxidase assembly protein NAL94_02370 PF00510 Cytochrome c oxidase subunit III NAL94_02375 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 NAL94_02380 PF00115 Cytochrome C and Quinol oxidase polypeptide I NAL94_02385 PF02790 Cytochrome C oxidase subunit II, transmembrane domain NAL94_02385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain NAL94_02390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NAL94_02390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NAL94_02390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NAL94_02390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NAL94_02400 PF01810 LysE type translocator NAL94_02420 PF01557 Fumarylacetoacetate (FAA) hydrolase family NAL94_02430 PF00267 Gram-negative porin NAL94_02435 PF00892 EamA-like transporter family NAL94_02440 PF00462 Glutaredoxin NAL94_02450 PF07690 Major Facilitator Superfamily NAL94_02455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_02455 PF03466 LysR substrate binding domain NAL94_02460 PF08447 PAS fold NAL94_02460 PF00563 EAL domain NAL94_02460 PF08448 PAS fold NAL94_02460 PF00990 Diguanylate cyclase, GGDEF domain NAL94_02465 PF08525 Opacity-associated protein A N-terminal motif NAL94_02465 PF01551 Peptidase family M23 NAL94_02465 PF01476 LysM domain NAL94_02485 PF07670 Nucleoside recognition NAL94_02490 PF00672 HAMP domain NAL94_02490 PF02743 Cache domain NAL94_02490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_02500 PF03222 Tryptophan/tyrosine permease family NAL94_02520 PF03928 Haem-degrading NAL94_02525 PF00248 Aldo/keto reductase family NAL94_02530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_02530 PF03466 LysR substrate binding domain NAL94_02550 PF01638 HxlR-like helix-turn-helix NAL94_02565 PF01758 Sodium Bile acid symporter family NAL94_02575 PF01161 Phosphatidylethanolamine-binding protein NAL94_02580 PF02567 Phenazine biosynthesis-like protein NAL94_02590 PF00005 ABC transporter NAL94_02620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_02625 PF00873 AcrB/AcrD/AcrF family NAL94_02640 PF00990 Diguanylate cyclase, GGDEF domain NAL94_02640 PF17151 Periplasmic sensor domain NAL94_02650 PF13302 Acetyltransferase (GNAT) domain NAL94_02660 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NAL94_02665 PF00873 AcrB/AcrD/AcrF family NAL94_02670 PF13533 Biotin-lipoyl like NAL94_02680 PF00326 Prolyl oligopeptidase family NAL94_02680 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NAL94_02685 PF12848 ABC transporter NAL94_02685 PF16326 ABC transporter C-terminal domain NAL94_02685 PF00005 ABC transporter NAL94_02690 PF00582 Universal stress protein family NAL94_02695 PF02525 Flavodoxin-like fold NAL94_02700 PF00999 Sodium/hydrogen exchanger family NAL94_02700 PF02254 TrkA-N domain NAL94_02715 PF00128 Alpha amylase, catalytic domain NAL94_02720 PF13411 MerR HTH family regulatory protein NAL94_02725 PF02627 Carboxymuconolactone decarboxylase family NAL94_02735 PF08453 Peptidase family M9 N-terminal NAL94_02735 PF04151 Bacterial pre-peptidase C-terminal domain NAL94_02735 PF01752 Collagenase NAL94_02745 PF01039 Carboxyl transferase domain NAL94_02745 PF17848 Acetyl-coA carboxylase zinc finger domain NAL94_02750 PF03466 LysR substrate binding domain NAL94_02750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_02755 PF02743 Cache domain NAL94_02755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_02755 PF00672 HAMP domain NAL94_02760 PF03824 High-affinity nickel-transport protein NAL94_02765 PF02583 Metal-sensitive transcriptional repressor NAL94_02770 PF02447 GntP family permease NAL94_02775 PF01370 NAD dependent epimerase/dehydratase family NAL94_02780 PF01261 Xylose isomerase-like TIM barrel NAL94_02785 PF00596 Class II Aldolase and Adducin N-terminal domain NAL94_02790 PF17042 Nucleotide-binding C-terminal domain NAL94_02790 PF07005 Sugar-binding N-terminal domain NAL94_02795 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAL94_02795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NAL94_02800 PF00455 DeoR C terminal sensor domain NAL94_02800 PF08220 DeoR-like helix-turn-helix domain NAL94_02805 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_02810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_02815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_02815 PF00005 ABC transporter NAL94_02820 PF00005 ABC transporter NAL94_02820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_02825 PF01554 MatE NAL94_02835 PF01584 CheW-like domain NAL94_02835 PF00072 Response regulator receiver domain NAL94_02845 PF01243 Pyridoxamine 5'-phosphate oxidase NAL94_02850 PF06228 Haem utilisation ChuX/HutX NAL94_02855 PF04055 Radical SAM superfamily NAL94_02860 PF03544 Gram-negative bacterial TonB protein C-terminal NAL94_02865 PF01618 MotA/TolQ/ExbB proton channel family NAL94_02870 PF02472 Biopolymer transport protein ExbD/TolR NAL94_02880 PF01032 FecCD transport family NAL94_02885 PF00005 ABC transporter NAL94_02925 PF01467 Cytidylyltransferase-like NAL94_02930 PF02540 NAD synthase NAL94_02935 PF03473 MOSC domain NAL94_02935 PF03476 MOSC N-terminal beta barrel domain NAL94_02935 PF00111 2Fe-2S iron-sulfur cluster binding domain NAL94_02935 PF03476 MOSC N-terminal beta barrel domain NAL94_02935 PF03473 MOSC domain NAL94_02935 PF00111 2Fe-2S iron-sulfur cluster binding domain NAL94_02940 PF01679 Proteolipid membrane potential modulator NAL94_02945 PF01979 Amidohydrolase family NAL94_02950 PF05661 Protein of unknown function (DUF808) NAL94_02980 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_02985 PF14785 Maltose transport system permease protein MalF P2 domain NAL94_02985 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_02990 PF01547 Bacterial extracellular solute-binding protein NAL94_02995 PF00005 ABC transporter NAL94_02995 PF08402 TOBE domain NAL94_03000 PF02397 Bacterial sugar transferase NAL94_03015 PF13614 AAA domain NAL94_03015 PF02706 Chain length determinant protein NAL94_03015 PF13807 G-rich domain on putative tyrosine kinase NAL94_03025 PF00534 Glycosyl transferases group 1 NAL94_03025 PF13439 Glycosyltransferase Family 4 NAL94_03055 PF04266 ASCH domain NAL94_03060 PF00440 Bacterial regulatory proteins, tetR family NAL94_03060 PF16925 Tetracyclin repressor-like, C-terminal domain NAL94_03065 PF00107 Zinc-binding dehydrogenase NAL94_03065 PF16884 N-terminal domain of oxidoreductase NAL94_03070 PF13417 Glutathione S-transferase, N-terminal domain NAL94_03075 PF06628 Catalase-related immune-responsive NAL94_03075 PF00199 Catalase NAL94_03080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NAL94_03080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAL94_03090 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_03090 PF18113 Rubredoxin binding C-terminal domain NAL94_03095 PF00753 Metallo-beta-lactamase superfamily NAL94_03095 PF00258 Flavodoxin NAL94_03095 PF00301 Rubredoxin NAL94_03100 PF00158 Sigma-54 interaction domain NAL94_03100 PF01590 GAF domain NAL94_03110 PF13419 Haloacid dehalogenase-like hydrolase NAL94_03115 PF00127 Copper binding proteins, plastocyanin/azurin family NAL94_03125 PF01266 FAD dependent oxidoreductase NAL94_03130 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_03130 PF18113 Rubredoxin binding C-terminal domain NAL94_03140 PF00171 Aldehyde dehydrogenase family NAL94_03145 PF00355 Rieske [2Fe-2S] domain NAL94_03145 PF00848 Ring hydroxylating alpha subunit (catalytic domain) NAL94_03150 PF02028 BCCT, betaine/carnitine/choline family transporter NAL94_03155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_03155 PF03466 LysR substrate binding domain NAL94_03160 PF02386 Cation transport protein NAL94_03165 PF02254 TrkA-N domain NAL94_03165 PF02080 TrkA-C domain NAL94_03170 PF00486 Transcriptional regulatory protein, C terminal NAL94_03170 PF00072 Response regulator receiver domain NAL94_03175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_03175 PF00512 His Kinase A (phospho-acceptor) domain NAL94_03175 PF13493 Domain of unknown function (DUF4118) NAL94_03175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_03175 PF00512 His Kinase A (phospho-acceptor) domain NAL94_03175 PF02702 Osmosensitive K+ channel His kinase sensor domain NAL94_03175 PF02702 Osmosensitive K+ channel His kinase sensor domain NAL94_03175 PF13493 Domain of unknown function (DUF4118) NAL94_03180 PF00005 ABC transporter NAL94_03180 PF00664 ABC transporter transmembrane region NAL94_03185 PF07715 TonB-dependent Receptor Plug Domain NAL94_03185 PF00593 TonB dependent receptor NAL94_03190 PF00005 ABC transporter NAL94_03195 PF01497 Periplasmic binding protein NAL94_03200 PF01032 FecCD transport family NAL94_03210 PF00529 HlyD membrane-fusion protein of T1SS NAL94_03215 PF00664 ABC transporter transmembrane region NAL94_03215 PF00005 ABC transporter NAL94_03225 PF00196 Bacterial regulatory proteins, luxR family NAL94_03230 PF00196 Bacterial regulatory proteins, luxR family NAL94_03240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_03240 PF02743 Cache domain NAL94_03240 PF00672 HAMP domain NAL94_03245 PF17863 AAA lid domain NAL94_03245 PF07726 ATPase family associated with various cellular activities (AAA) NAL94_03250 PF01882 Protein of unknown function DUF58 NAL94_03260 PF07584 Aerotolerance regulator N-terminal NAL94_03260 PF13519 von Willebrand factor type A domain NAL94_03265 PF07584 Aerotolerance regulator N-terminal NAL94_03265 PF13519 von Willebrand factor type A domain NAL94_03280 PF00005 ABC transporter NAL94_03285 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_03290 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_03295 PF12849 PBP superfamily domain NAL94_03300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_03300 PF00672 HAMP domain NAL94_03320 PF07715 TonB-dependent Receptor Plug Domain NAL94_03320 PF00593 TonB dependent receptor NAL94_03325 PF00326 Prolyl oligopeptidase family NAL94_03325 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NAL94_03330 PF00270 DEAD/DEAH box helicase NAL94_03330 PF00271 Helicase conserved C-terminal domain NAL94_03340 PF03734 L,D-transpeptidase catalytic domain NAL94_03340 PF17969 L,D-transpeptidase C-terminal domain NAL94_03340 PF01476 LysM domain NAL94_03345 PF00875 DNA photolyase NAL94_03345 PF03441 FAD binding domain of DNA photolyase NAL94_03350 PF13411 MerR HTH family regulatory protein NAL94_03355 PF08349 Protein of unknown function (DUF1722) NAL94_03360 PF01048 Phosphorylase superfamily NAL94_03375 PF00990 Diguanylate cyclase, GGDEF domain NAL94_03380 PF11742 Protein of unknown function (DUF3302) NAL94_03385 PF00529 HlyD membrane-fusion protein of T1SS NAL94_03385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_03390 PF07155 ECF-type riboflavin transporter, S component NAL94_03395 PF12558 ATP-binding cassette cobalt transporter NAL94_03395 PF00005 ABC transporter NAL94_03415 PF12801 4Fe-4S binding domain NAL94_03415 PF13237 4Fe-4S dicluster domain NAL94_03420 PF12838 4Fe-4S dicluster domain NAL94_03420 PF12800 4Fe-4S binding domain NAL94_03425 PF00583 Acetyltransferase (GNAT) family NAL94_03440 PF07238 PilZ domain NAL94_03440 PF12945 Flagellar protein YcgR NAL94_03445 PF13609 Gram-negative porin NAL94_03450 PF00672 HAMP domain NAL94_03450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_03450 PF12729 Four helix bundle sensory module for signal transduction NAL94_03455 PF05362 Lon protease (S16) C-terminal proteolytic domain NAL94_03455 PF13654 AAA domain NAL94_03465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_03465 PF00005 ABC transporter NAL94_03470 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NAL94_03470 PF00326 Prolyl oligopeptidase family NAL94_03475 PF03466 LysR substrate binding domain NAL94_03475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_03480 PF02652 L-lactate permease NAL94_03485 PF01070 FMN-dependent dehydrogenase NAL94_03500 PF00194 Eukaryotic-type carbonic anhydrase NAL94_03530 PF00107 Zinc-binding dehydrogenase NAL94_03530 PF08240 Alcohol dehydrogenase GroES-like domain NAL94_03535 PF00155 Aminotransferase class I and II NAL94_03540 PF00563 EAL domain NAL94_03540 PF13188 PAS domain NAL94_03540 PF03707 Bacterial signalling protein N terminal repeat NAL94_03540 PF00990 Diguanylate cyclase, GGDEF domain NAL94_03545 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_03555 PF00080 Copper/zinc superoxide dismutase (SODC) NAL94_03560 PF00512 His Kinase A (phospho-acceptor) domain NAL94_03560 PF08448 PAS fold NAL94_03560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_03560 PF13426 PAS domain NAL94_03560 PF00072 Response regulator receiver domain NAL94_03565 PF00486 Transcriptional regulatory protein, C terminal NAL94_03565 PF00072 Response regulator receiver domain NAL94_03585 PF03466 LysR substrate binding domain NAL94_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_03590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NAL94_03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_03625 PF03466 LysR substrate binding domain NAL94_03640 PF18269 T3SS EscN ATPase C-terminal domain NAL94_03640 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NAL94_03650 PF14842 FliG N-terminal domain NAL94_03650 PF14841 FliG middle domain NAL94_03650 PF01706 FliG C-terminal domain NAL94_03655 PF01514 Secretory protein of YscJ/FliF family NAL94_03655 PF08345 Flagellar M-ring protein C-terminal NAL94_03660 PF02049 Flagellar hook-basal body complex protein FliE NAL94_03665 PF00158 Sigma-54 interaction domain NAL94_03665 PF00072 Response regulator receiver domain NAL94_03665 PF02954 Bacterial regulatory protein, Fis family NAL94_03680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NAL94_03685 PF00813 FliP family NAL94_03690 PF01313 Bacterial export proteins, family 3 NAL94_03695 PF01311 Bacterial export proteins, family 1 NAL94_03700 PF01312 FlhB HrpN YscU SpaS Family NAL94_03705 PF00771 FHIPEP family NAL94_03715 PF00700 Bacterial flagellin C-terminal helical region NAL94_03715 PF00669 Bacterial flagellin N-terminal helical region NAL94_03725 PF02465 Flagellar hook-associated protein 2 N-terminus NAL94_03725 PF07195 Flagellar hook-associated protein 2 C-terminus NAL94_03725 PF07196 Flagellin hook IN motif NAL94_03730 PF02561 Flagellar protein FliS NAL94_03745 PF03748 Flagellar basal body-associated protein FliL NAL94_03750 PF04542 Sigma-70 region 2 NAL94_03750 PF04545 Sigma-70, region 4 NAL94_03755 PF01618 MotA/TolQ/ExbB proton channel family NAL94_03760 PF00691 OmpA family NAL94_03760 PF13677 Membrane MotB of proton-channel complex MotA/MotB NAL94_03775 PF08000 Bacterial PH domain NAL94_03795 PF01228 Glycine radical NAL94_03795 PF02901 Pyruvate formate lyase-like NAL94_03800 PF04055 Radical SAM superfamily NAL94_03805 PF00923 Transaldolase/Fructose-6-phosphate aldolase NAL94_03820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_03820 PF00672 HAMP domain NAL94_03820 PF00512 His Kinase A (phospho-acceptor) domain NAL94_03825 PF00072 Response regulator receiver domain NAL94_03825 PF00486 Transcriptional regulatory protein, C terminal NAL94_03835 PF00583 Acetyltransferase (GNAT) family NAL94_03845 PF07690 Major Facilitator Superfamily NAL94_03850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_03850 PF03466 LysR substrate binding domain NAL94_03855 PF00892 EamA-like transporter family NAL94_03875 PF13533 Biotin-lipoyl like NAL94_03885 PF01594 AI-2E family transporter NAL94_03890 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NAL94_03900 PF00970 Oxidoreductase FAD-binding domain NAL94_03900 PF00175 Oxidoreductase NAD-binding domain NAL94_03910 PF09905 DNA-binding protein VF530 NAL94_03915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_03915 PF03466 LysR substrate binding domain NAL94_03925 PF00881 Nitroreductase family NAL94_03930 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NAL94_03930 PF12833 Helix-turn-helix domain NAL94_03935 PF00686 Starch binding domain NAL94_03935 PF00128 Alpha amylase, catalytic domain NAL94_03940 PF00768 D-alanyl-D-alanine carboxypeptidase NAL94_03940 PF07943 Penicillin-binding protein 5, C-terminal domain NAL94_03945 PF00561 alpha/beta hydrolase fold NAL94_03955 PF00581 Rhodanese-like domain NAL94_03955 PF17773 UPF0176 acylphosphatase like domain NAL94_03965 PF00875 DNA photolyase NAL94_03965 PF03441 FAD binding domain of DNA photolyase NAL94_03970 PF02469 Fasciclin domain NAL94_03975 PF18416 N-acetylglucosamine binding protein domain 2 NAL94_03975 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading NAL94_03980 PF01734 Patatin-like phospholipase NAL94_03985 PF01914 MarC family integral membrane protein NAL94_03990 PF00881 Nitroreductase family NAL94_04000 PF02563 Polysaccharide biosynthesis/export protein NAL94_04000 PF10531 SLBB domain NAL94_04000 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NAL94_04005 PF01451 Low molecular weight phosphotyrosine protein phosphatase NAL94_04010 PF13614 AAA domain NAL94_04010 PF02706 Chain length determinant protein NAL94_04010 PF13807 G-rich domain on putative tyrosine kinase NAL94_04020 PF08803 Putative mono-oxygenase ydhR NAL94_04025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_04025 PF03466 LysR substrate binding domain NAL94_04035 PF00375 Sodium:dicarboxylate symporter family NAL94_04050 PF06803 Protein of unknown function (DUF1232) NAL94_04055 PF07687 Peptidase dimerisation domain NAL94_04055 PF01546 Peptidase family M20/M25/M40 NAL94_04060 PF07670 Nucleoside recognition NAL94_04065 PF07670 Nucleoside recognition NAL94_04080 PF00128 Alpha amylase, catalytic domain NAL94_04085 PF00912 Transglycosylase NAL94_04090 PF00128 Alpha amylase, catalytic domain NAL94_04090 PF02806 Alpha amylase, C-terminal all-beta domain NAL94_04090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NAL94_04095 PF02446 4-alpha-glucanotransferase NAL94_04100 PF00343 Carbohydrate phosphorylase NAL94_04105 PF00196 Bacterial regulatory proteins, luxR family NAL94_04105 PF17874 MalT-like TPR region NAL94_04120 PF02630 SCO1/SenC NAL94_04125 PF02378 Phosphotransferase system, EIIC NAL94_04125 PF00367 phosphotransferase system, EIIB NAL94_04130 PF03193 RsgA GTPase NAL94_04135 PF00375 Sodium:dicarboxylate symporter family NAL94_04140 PF08543 Phosphomethylpyrimidine kinase NAL94_04150 PF13520 Amino acid permease NAL94_04155 PF01276 Orn/Lys/Arg decarboxylase, major domain NAL94_04155 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NAL94_04155 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NAL94_04170 PF03714 Bacterial pullanase-associated domain NAL94_04170 PF18494 Pullulanase Ins domain NAL94_04170 PF17967 Pullulanase N2 domain NAL94_04170 PF11852 Domain of unknown function (DUF3372) NAL94_04170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NAL94_04175 PF04231 Endonuclease I NAL94_04180 PF00128 Alpha amylase, catalytic domain NAL94_04180 PF02903 Alpha amylase, N-terminal ig-like domain NAL94_04180 PF16657 Maltogenic Amylase, C-terminal domain NAL94_04195 PF02264 LamB porin NAL94_04200 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) NAL94_04200 PF00128 Alpha amylase, catalytic domain NAL94_04205 PF03313 Serine dehydratase alpha chain NAL94_04205 PF03315 Serine dehydratase beta chain NAL94_04210 PF00474 Sodium:solute symporter family NAL94_04215 PF07690 Major Facilitator Superfamily NAL94_04230 PF12697 Alpha/beta hydrolase family NAL94_04245 PF00815 Histidinol dehydrogenase NAL94_04250 PF03328 HpcH/HpaI aldolase/citrate lyase family NAL94_04255 PF00356 Bacterial regulatory proteins, lacI family NAL94_04260 PF03480 Bacterial extracellular solute-binding protein, family 7 NAL94_04270 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NAL94_04270 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NAL94_04285 PF00474 Sodium:solute symporter family NAL94_04290 PF00356 Bacterial regulatory proteins, lacI family NAL94_04295 PF02796 Helix-turn-helix domain of resolvase NAL94_04295 PF00239 Resolvase, N terminal domain NAL94_04300 PF07690 Major Facilitator Superfamily NAL94_04315 PF04225 Opacity-associated protein A LysM-like domain NAL94_04315 PF01551 Peptidase family M23 NAL94_04325 PF00675 Insulinase (Peptidase family M16) NAL94_04325 PF05193 Peptidase M16 inactive domain NAL94_04330 PF17200 Single Cache domain 2 NAL94_04330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_04330 PF00672 HAMP domain NAL94_04335 PF00005 ABC transporter NAL94_04340 PF01032 FecCD transport family NAL94_04345 PF01032 FecCD transport family NAL94_04350 PF01497 Periplasmic binding protein NAL94_04355 PF00593 TonB dependent receptor NAL94_04355 PF07660 Secretin and TonB N terminus short domain NAL94_04355 PF07715 TonB-dependent Receptor Plug Domain NAL94_04360 PF00593 TonB dependent receptor NAL94_04360 PF07715 TonB-dependent Receptor Plug Domain NAL94_04365 PF00206 Lyase NAL94_04365 PF02655 ATP-grasp domain NAL94_04370 PF06276 Ferric iron reductase FhuF-like transporter NAL94_04370 PF04183 IucA / IucC family NAL94_04380 PF04183 IucA / IucC family NAL94_04380 PF06276 Ferric iron reductase FhuF-like transporter NAL94_04385 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NAL94_04385 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NAL94_04390 PF01547 Bacterial extracellular solute-binding protein NAL94_04395 PF08521 Two-component sensor kinase N-terminal NAL94_04395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_04395 PF00512 His Kinase A (phospho-acceptor) domain NAL94_04400 PF00072 Response regulator receiver domain NAL94_04400 PF00486 Transcriptional regulatory protein, C terminal NAL94_04405 PF02378 Phosphotransferase system, EIIC NAL94_04405 PF00367 phosphotransferase system, EIIB NAL94_04415 PF01136 Peptidase family U32 NAL94_04425 PF00005 ABC transporter NAL94_04430 PF12704 MacB-like periplasmic core domain NAL94_04430 PF02687 FtsX-like permease family NAL94_04465 PF02566 OsmC-like protein NAL94_04470 PF01047 MarR family NAL94_04475 PF10417 C-terminal domain of 1-Cys peroxiredoxin NAL94_04475 PF00578 AhpC/TSA family NAL94_04480 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_04480 PF13192 Thioredoxin domain NAL94_04495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_04495 PF03466 LysR substrate binding domain NAL94_04500 PF01965 DJ-1/PfpI family NAL94_04500 PF12833 Helix-turn-helix domain NAL94_04505 PF04542 Sigma-70 region 2 NAL94_04505 PF08281 Sigma-70, region 4 NAL94_04530 PF00271 Helicase conserved C-terminal domain NAL94_04530 PF00270 DEAD/DEAH box helicase NAL94_04540 PF00005 ABC transporter NAL94_04540 PF00664 ABC transporter transmembrane region NAL94_04550 PF01037 Lrp/AsnC ligand binding domain NAL94_04580 PF00474 Sodium:solute symporter family NAL94_04590 PF00171 Aldehyde dehydrogenase family NAL94_04590 PF01619 Proline dehydrogenase NAL94_04590 PF14850 DNA-binding domain of Proline dehydrogenase NAL94_04590 PF18327 Proline utilization A proline dehydrogenase N-terminal domain NAL94_04595 PF12833 Helix-turn-helix domain NAL94_04605 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region NAL94_04605 PF01243 Pyridoxamine 5'-phosphate oxidase NAL94_04610 PF02743 Cache domain NAL94_04610 PF00512 His Kinase A (phospho-acceptor) domain NAL94_04610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_04615 PF00072 Response regulator receiver domain NAL94_04615 PF00158 Sigma-54 interaction domain NAL94_04615 PF02954 Bacterial regulatory protein, Fis family NAL94_04620 PF00529 HlyD membrane-fusion protein of T1SS NAL94_04635 PF03412 Peptidase C39 family NAL94_04635 PF00005 ABC transporter NAL94_04635 PF00664 ABC transporter transmembrane region NAL94_04645 PF03358 NADPH-dependent FMN reductase NAL94_04650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_04655 PF00246 Zinc carboxypeptidase NAL94_04660 PF01418 Helix-turn-helix domain, rpiR family NAL94_04660 PF01380 SIS domain NAL94_04665 PF01380 SIS domain NAL94_04670 PF00367 phosphotransferase system, EIIB NAL94_04670 PF02378 Phosphotransferase system, EIIC NAL94_04675 PF00267 Gram-negative porin NAL94_04680 PF03575 Peptidase family S51 NAL94_04685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_04685 PF03466 LysR substrate binding domain NAL94_04690 PF00132 Bacterial transferase hexapeptide (six repeats) NAL94_04700 PF13718 GNAT acetyltransferase 2 NAL94_04700 PF05127 Helicase NAL94_04705 PF08775 ParB family NAL94_04705 PF02195 ParB-like nuclease domain NAL94_04710 PF13614 AAA domain NAL94_04710 PF18607 ParA helix turn helix domain NAL94_04725 PF00005 ABC transporter NAL94_04725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_04730 PF00005 ABC transporter NAL94_04730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_04740 PF08719 Domain of unknown function (DUF1768) NAL94_04740 PF00925 GTP cyclohydrolase II NAL94_04750 PF17149 Periplasmic sensor domain found in signal transduction proteins NAL94_04750 PF00072 Response regulator receiver domain NAL94_04750 PF00512 His Kinase A (phospho-acceptor) domain NAL94_04750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_04750 PF00672 HAMP domain NAL94_04750 PF01627 Hpt domain NAL94_04760 PF01709 Transcriptional regulator NAL94_04765 PF01098 Cell cycle protein NAL94_04775 PF00005 ABC transporter NAL94_04795 PF07694 5TMR of 5TMR-LYT NAL94_04795 PF13492 GAF domain NAL94_04795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_04795 PF06580 Histidine kinase NAL94_04800 PF00072 Response regulator receiver domain NAL94_04800 PF04397 LytTr DNA-binding domain NAL94_04810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NAL94_04815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_04815 PF00672 HAMP domain NAL94_04815 PF17200 Single Cache domain 2 NAL94_04830 PF03616 Sodium/glutamate symporter NAL94_04840 PF00005 ABC transporter NAL94_04845 PF00392 Bacterial regulatory proteins, gntR family NAL94_04845 PF00155 Aminotransferase class I and II NAL94_04850 PF03616 Sodium/glutamate symporter NAL94_04860 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NAL94_04875 PF03466 LysR substrate binding domain NAL94_04875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_04880 PF17954 Quercetinase C-terminal cupin domain NAL94_04880 PF02678 Pirin NAL94_04885 PF07681 DoxX NAL94_04895 PF02805 Metal binding domain of Ada NAL94_04895 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NAL94_04895 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NAL94_04895 PF12833 Helix-turn-helix domain NAL94_04900 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain NAL94_04900 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NAL94_04910 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NAL94_04920 PF03600 Citrate transporter NAL94_04935 PF12697 Alpha/beta hydrolase family NAL94_04940 PF08329 Chitinase A, N-terminal domain NAL94_04940 PF00704 Glycosyl hydrolases family 18 NAL94_04950 PF06865 Pyrimidine/purine nucleoside phosphorylase NAL94_04960 PF03707 Bacterial signalling protein N terminal repeat NAL94_04960 PF00990 Diguanylate cyclase, GGDEF domain NAL94_04960 PF00563 EAL domain NAL94_04965 PF01554 MatE NAL94_04970 PF00849 RNA pseudouridylate synthase NAL94_04985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_04985 PF03466 LysR substrate binding domain NAL94_05000 PF17152 Periplasmic sensor domain NAL94_05000 PF00990 Diguanylate cyclase, GGDEF domain NAL94_05010 PF00756 Putative esterase NAL94_05015 PF00107 Zinc-binding dehydrogenase NAL94_05015 PF08240 Alcohol dehydrogenase GroES-like domain NAL94_05020 PF00797 N-acetyltransferase NAL94_05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_05025 PF03466 LysR substrate binding domain NAL94_05030 PF08021 Siderophore-interacting FAD-binding domain NAL94_05030 PF04954 Siderophore-interacting protein NAL94_05035 PF01810 LysE type translocator NAL94_05040 PF01037 Lrp/AsnC ligand binding domain NAL94_05060 PF13599 Pentapeptide repeats (9 copies) NAL94_05065 PF03922 OmpW family NAL94_05070 PF13533 Biotin-lipoyl like NAL94_05075 PF07690 Major Facilitator Superfamily NAL94_05085 PF12706 Beta-lactamase superfamily domain NAL94_05090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NAL94_05125 PF05651 Putative sugar diacid recognition NAL94_05125 PF17853 GGDEF-like domain NAL94_05125 PF13556 PucR C-terminal helix-turn-helix domain NAL94_05130 PF02447 GntP family permease NAL94_05135 PF02595 Glycerate kinase family NAL94_05140 PF00392 Bacterial regulatory proteins, gntR family NAL94_05140 PF00155 Aminotransferase class I and II NAL94_05160 PF00583 Acetyltransferase (GNAT) family NAL94_05180 PF13302 Acetyltransferase (GNAT) domain NAL94_05185 PF03264 NapC/NirT cytochrome c family, N-terminal region NAL94_05190 PF01568 Molydopterin dinucleotide binding domain NAL94_05190 PF18364 Molybdopterin oxidoreductase N-terminal domain NAL94_05190 PF00384 Molybdopterin oxidoreductase NAL94_05200 PF02581 Thiamine monophosphate synthase NAL94_05205 PF02110 Hydroxyethylthiazole kinase family NAL94_05210 PF03070 TENA/THI-4/PQQC family NAL94_05215 PF09084 NMT1/THI5 like NAL94_05220 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_05225 PF00005 ABC transporter NAL94_05230 PF08543 Phosphomethylpyrimidine kinase NAL94_05235 PF01523 Putative modulator of DNA gyrase NAL94_05240 PF01523 Putative modulator of DNA gyrase NAL94_05245 PF04013 Putative SAM-dependent RNA methyltransferase NAL94_05300 PF10928 Protein of unknown function (DUF2810) NAL94_05305 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAL94_05305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAL94_05315 PF03009 Glycerophosphoryl diester phosphodiesterase family NAL94_05320 PF00486 Transcriptional regulatory protein, C terminal NAL94_05320 PF00072 Response regulator receiver domain NAL94_05325 PF16750 Sensor domain of 2-component histidine kinase NAL94_05325 PF00512 His Kinase A (phospho-acceptor) domain NAL94_05325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_05325 PF00672 HAMP domain NAL94_05330 PF07715 TonB-dependent Receptor Plug Domain NAL94_05330 PF00593 TonB dependent receptor NAL94_05340 PF01618 MotA/TolQ/ExbB proton channel family NAL94_05345 PF01618 MotA/TolQ/ExbB proton channel family NAL94_05350 PF02472 Biopolymer transport protein ExbD/TolR NAL94_05395 PF01297 Zinc-uptake complex component A periplasmic NAL94_05400 PF00005 ABC transporter NAL94_05405 PF00950 ABC 3 transport family NAL94_05420 PF00326 Prolyl oligopeptidase family NAL94_05420 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain NAL94_05425 PF07690 Major Facilitator Superfamily NAL94_05430 PF00491 Arginase family NAL94_05435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NAL94_05435 PF17944 Arginine decarboxylase C-terminal helical extension NAL94_05435 PF17810 Arginine decarboxylase helical bundle domain NAL94_05440 PF00753 Metallo-beta-lactamase superfamily NAL94_05445 PF18030 RimK PreATP-grasp domain NAL94_05445 PF08443 RimK-like ATP-grasp domain NAL94_05450 PF08443 RimK-like ATP-grasp domain NAL94_05450 PF18030 RimK PreATP-grasp domain NAL94_05460 PF12706 Beta-lactamase superfamily domain NAL94_05470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_05470 PF03466 LysR substrate binding domain NAL94_05485 PF00232 Glycosyl hydrolase family 1 NAL94_05490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_05490 PF00512 His Kinase A (phospho-acceptor) domain NAL94_05490 PF02743 Cache domain NAL94_05495 PF00072 Response regulator receiver domain NAL94_05495 PF00158 Sigma-54 interaction domain NAL94_05495 PF02954 Bacterial regulatory protein, Fis family NAL94_05500 PF00990 Diguanylate cyclase, GGDEF domain NAL94_05505 PF05525 Branched-chain amino acid transport protein NAL94_05520 PF01266 FAD dependent oxidoreductase NAL94_05525 PF04229 GrpB protein NAL94_05540 PF02322 Cytochrome bd terminal oxidase subunit II NAL94_05545 PF01654 Cytochrome bd terminal oxidase subunit I NAL94_05550 PF03116 NQR2, RnfD, RnfE family NAL94_05555 PF01212 Beta-eliminating lyase NAL94_05570 PF01773 Na+ dependent nucleoside transporter N-terminus NAL94_05570 PF07662 Na+ dependent nucleoside transporter C-terminus NAL94_05570 PF07670 Nucleoside recognition NAL94_05585 PF00990 Diguanylate cyclase, GGDEF domain NAL94_05585 PF05230 MASE2 domain NAL94_05600 PF00990 Diguanylate cyclase, GGDEF domain NAL94_05605 PF00875 DNA photolyase NAL94_05605 PF03441 FAD binding domain of DNA photolyase NAL94_05610 PF04244 Deoxyribodipyrimidine photo-lyase-related protein NAL94_05625 PF01641 SelR domain NAL94_05625 PF01625 Peptide methionine sulfoxide reductase NAL94_05630 PF02566 OsmC-like protein NAL94_05635 PF12464 Maltose acetyltransferase NAL94_05635 PF14602 Hexapeptide repeat of succinyl-transferase NAL94_05670 PF03466 LysR substrate binding domain NAL94_05670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_05675 PF13419 Haloacid dehalogenase-like hydrolase NAL94_05690 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NAL94_05695 PF00194 Eukaryotic-type carbonic anhydrase NAL94_05700 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NAL94_05705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_05710 PF02687 FtsX-like permease family NAL94_05710 PF00005 ABC transporter NAL94_05710 PF12704 MacB-like periplasmic core domain NAL94_05715 PF02321 Outer membrane efflux protein NAL94_05725 PF00440 Bacterial regulatory proteins, tetR family NAL94_05730 PF00657 GDSL-like Lipase/Acylhydrolase NAL94_05735 PF05922 Peptidase inhibitor I9 NAL94_05735 PF00082 Subtilase family NAL94_05745 PF03611 PTS system sugar-specific permease component NAL94_05755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NAL94_05760 PF00356 Bacterial regulatory proteins, lacI family NAL94_05765 PF13419 Haloacid dehalogenase-like hydrolase NAL94_05770 PF00202 Aminotransferase class-III NAL94_05775 PF00266 Aminotransferase class-V NAL94_05785 PF00005 ABC transporter NAL94_05790 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_05795 PF07702 UTRA domain NAL94_05795 PF00392 Bacterial regulatory proteins, gntR family NAL94_05810 PF04393 Protein of unknown function (DUF535) NAL94_05820 PF01266 FAD dependent oxidoreductase NAL94_05825 PF18027 Cytosolic carboxypeptidase N-terminal domain NAL94_05825 PF00246 Zinc carboxypeptidase NAL94_05830 PF01389 OmpA-like transmembrane domain NAL94_05830 PF00691 OmpA family NAL94_05835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_05835 PF03466 LysR substrate binding domain NAL94_05840 PF03466 LysR substrate binding domain NAL94_05840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_05850 PF03315 Serine dehydratase beta chain NAL94_05850 PF03313 Serine dehydratase alpha chain NAL94_05870 PF08264 Anticodon-binding domain of tRNA NAL94_05870 PF00133 tRNA synthetases class I (I, L, M and V) NAL94_05875 PF01464 Transglycosylase SLT domain NAL94_05895 PF00460 Flagella basal body rod protein NAL94_05900 PF00460 Flagella basal body rod protein NAL94_05900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_05905 PF13861 FlgD Tudor-like domain NAL94_05905 PF03963 Flagellar hook capping protein - N-terminal region NAL94_05905 PF13860 FlgD Ig-like domain NAL94_05910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_05910 PF00460 Flagella basal body rod protein NAL94_05910 PF07559 Flagellar basal body protein FlaE NAL94_05915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_05915 PF00460 Flagella basal body rod protein NAL94_05920 PF00460 Flagella basal body rod protein NAL94_05920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_05925 PF02107 Flagellar L-ring protein NAL94_05930 PF02119 Flagellar P-ring protein NAL94_05935 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NAL94_05935 PF10135 Rod binding protein NAL94_05940 PF00460 Flagella basal body rod protein NAL94_05940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_05945 PF00669 Bacterial flagellin N-terminal helical region NAL94_05965 PF01070 FMN-dependent dehydrogenase NAL94_05980 PF00581 Rhodanese-like domain NAL94_05985 PF00166 Chaperonin 10 Kd subunit NAL94_05990 PF00118 TCP-1/cpn60 chaperonin family NAL94_06000 PF01810 LysE type translocator NAL94_06005 PF03466 LysR substrate binding domain NAL94_06005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06020 PF00440 Bacterial regulatory proteins, tetR family NAL94_06020 PF08359 YsiA-like protein, C-terminal region NAL94_06025 PF12833 Helix-turn-helix domain NAL94_06030 PF06751 Ethanolamine ammonia lyase large subunit (EutB) NAL94_06035 PF05985 Ethanolamine ammonia-lyase light chain (EutC) NAL94_06040 PF13520 Amino acid permease NAL94_06045 PF03060 Nitronate monooxygenase NAL94_06050 PF01641 SelR domain NAL94_06050 PF01625 Peptide methionine sulfoxide reductase NAL94_06055 PF08220 DeoR-like helix-turn-helix domain NAL94_06055 PF00455 DeoR C terminal sensor domain NAL94_06070 PF00857 Isochorismatase family NAL94_06080 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family NAL94_06080 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAL94_06105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06105 PF03466 LysR substrate binding domain NAL94_06120 PF06629 MltA-interacting protein MipA NAL94_06125 PF04170 NlpE N-terminal domain NAL94_06125 PF17185 NlpE C-terminal OB domain NAL94_06130 PF00571 CBS domain NAL94_06130 PF00005 ABC transporter NAL94_06135 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_06140 PF02001 Protein of unknown function DUF134 NAL94_06165 PF03144 Elongation factor Tu domain 2 NAL94_06165 PF00679 Elongation factor G C-terminus NAL94_06165 PF14492 Elongation Factor G, domain II NAL94_06165 PF03764 Elongation factor G, domain IV NAL94_06165 PF00009 Elongation factor Tu GTP binding domain NAL94_06170 PF13378 Enolase C-terminal domain-like NAL94_06170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NAL94_06180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06180 PF03466 LysR substrate binding domain NAL94_06190 PF09278 MerR, DNA binding NAL94_06190 PF00376 MerR family regulatory protein NAL94_06210 PF00398 Ribosomal RNA adenine dimethylase NAL94_06215 PF13091 PLD-like domain NAL94_06225 PF00873 AcrB/AcrD/AcrF family NAL94_06245 PF00873 AcrB/AcrD/AcrF family NAL94_06265 PF00005 ABC transporter NAL94_06265 PF08402 TOBE domain NAL94_06290 PF00392 Bacterial regulatory proteins, gntR family NAL94_06290 PF07702 UTRA domain NAL94_06295 PF02028 BCCT, betaine/carnitine/choline family transporter NAL94_06300 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 NAL94_06300 PF00703 Glycosyl hydrolases family 2 NAL94_06300 PF02836 Glycosyl hydrolases family 2, TIM barrel domain NAL94_06300 PF02837 Glycosyl hydrolases family 2, sugar binding domain NAL94_06315 PF13416 Bacterial extracellular solute-binding protein NAL94_06320 PF00579 tRNA synthetases class I (W and Y) NAL94_06325 PF00196 Bacterial regulatory proteins, luxR family NAL94_06325 PF00072 Response regulator receiver domain NAL94_06335 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain NAL94_06335 PF02896 PEP-utilising enzyme, TIM barrel domain NAL94_06335 PF00391 PEP-utilising enzyme, mobile domain NAL94_06340 PF03618 Kinase/pyrophosphorylase NAL94_06345 PF00710 Asparaginase, N-terminal NAL94_06345 PF17763 Glutaminase/Asparaginase C-terminal domain NAL94_06350 PF00709 Adenylosuccinate synthetase NAL94_06355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06355 PF03466 LysR substrate binding domain NAL94_06370 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) NAL94_06375 PF00202 Aminotransferase class-III NAL94_06380 PF00171 Aldehyde dehydrogenase family NAL94_06385 PF01037 Lrp/AsnC ligand binding domain NAL94_06390 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NAL94_06395 PF00557 Metallopeptidase family M24 NAL94_06395 PF01321 Creatinase/Prolidase N-terminal domain NAL94_06400 PF00392 Bacterial regulatory proteins, gntR family NAL94_06400 PF00155 Aminotransferase class I and II NAL94_06420 PF00107 Zinc-binding dehydrogenase NAL94_06420 PF08240 Alcohol dehydrogenase GroES-like domain NAL94_06425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NAL94_06435 PF03466 LysR substrate binding domain NAL94_06435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06440 PF03466 LysR substrate binding domain NAL94_06450 PF00271 Helicase conserved C-terminal domain NAL94_06450 PF00270 DEAD/DEAH box helicase NAL94_06470 PF00155 Aminotransferase class I and II NAL94_06475 PF12833 Helix-turn-helix domain NAL94_06475 PF01497 Periplasmic binding protein NAL94_06480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06480 PF03466 LysR substrate binding domain NAL94_06485 PF00106 short chain dehydrogenase NAL94_06520 PF00082 Subtilase family NAL94_06520 PF04151 Bacterial pre-peptidase C-terminal domain NAL94_06520 PF05922 Peptidase inhibitor I9 NAL94_06530 PF03466 LysR substrate binding domain NAL94_06530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06535 PF07715 TonB-dependent Receptor Plug Domain NAL94_06535 PF00593 TonB dependent receptor NAL94_06540 PF07859 alpha/beta hydrolase fold NAL94_06540 PF13472 GDSL-like Lipase/Acylhydrolase family NAL94_06545 PF02264 LamB porin NAL94_06545 PF11471 Maltoporin periplasmic N-terminal extension NAL94_06550 PF00356 Bacterial regulatory proteins, lacI family NAL94_06555 PF02378 Phosphotransferase system, EIIC NAL94_06555 PF00367 phosphotransferase system, EIIB NAL94_06560 PF00294 pfkB family carbohydrate kinase NAL94_06565 PF08244 Glycosyl hydrolases family 32 C terminal NAL94_06565 PF00251 Glycosyl hydrolases family 32 N-terminal domain NAL94_06570 PF02798 Glutathione S-transferase, N-terminal domain NAL94_06575 PF00768 D-alanyl-D-alanine carboxypeptidase NAL94_06575 PF07943 Penicillin-binding protein 5, C-terminal domain NAL94_06585 PF00462 Glutaredoxin NAL94_06585 PF08534 Redoxin NAL94_06590 PF00962 Adenosine/AMP deaminase NAL94_06605 PF00313 'Cold-shock' DNA-binding domain NAL94_06610 PF02678 Pirin NAL94_06610 PF05726 Pirin C-terminal cupin domain NAL94_06615 PF01734 Patatin-like phospholipase NAL94_06630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NAL94_06635 PF00884 Sulfatase NAL94_06635 PF08019 Phosphoethanolamine transferase EptA/EptB NAL94_06640 PF01219 Prokaryotic diacylglycerol kinase NAL94_06650 PF00672 HAMP domain NAL94_06650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_06650 PF00512 His Kinase A (phospho-acceptor) domain NAL94_06650 PF16527 Two-component sensor protein CpxA, periplasmic domain NAL94_06655 PF00072 Response regulator receiver domain NAL94_06655 PF00486 Transcriptional regulatory protein, C terminal NAL94_06670 PF01323 DSBA-like thioredoxin domain NAL94_06685 PF00255 Glutathione peroxidase NAL94_06690 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NAL94_06700 PF07690 Major Facilitator Superfamily NAL94_06710 PF01966 HD domain NAL94_06715 PF07969 Amidohydrolase family NAL94_06720 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin NAL94_06725 PF00571 CBS domain NAL94_06725 PF01769 Divalent cation transporter NAL94_06725 PF03448 MgtE intracellular N domain NAL94_06730 PF03109 ABC1 family NAL94_06735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_06735 PF00529 HlyD membrane-fusion protein of T1SS NAL94_06745 PF12833 Helix-turn-helix domain NAL94_06745 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term NAL94_06760 PF00486 Transcriptional regulatory protein, C terminal NAL94_06760 PF00072 Response regulator receiver domain NAL94_06765 PF16527 Two-component sensor protein CpxA, periplasmic domain NAL94_06765 PF00672 HAMP domain NAL94_06765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_06765 PF00512 His Kinase A (phospho-acceptor) domain NAL94_06775 PF00392 Bacterial regulatory proteins, gntR family NAL94_06775 PF00155 Aminotransferase class I and II NAL94_06780 PF13520 Amino acid permease NAL94_06790 PF03466 LysR substrate binding domain NAL94_06790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_06810 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAL94_06810 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAL94_06815 PF00072 Response regulator receiver domain NAL94_06815 PF00512 His Kinase A (phospho-acceptor) domain NAL94_06815 PF01627 Hpt domain NAL94_06815 PF00672 HAMP domain NAL94_06815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NAL94_06815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_06820 PF01554 MatE NAL94_06825 PF04363 Protein of unknown function (DUF496) NAL94_06835 PF04337 Protein of unknown function, DUF480 NAL94_06840 PF01541 GIY-YIG catalytic domain NAL94_06845 PF13407 Periplasmic binding protein domain NAL94_06850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_06850 PF00512 His Kinase A (phospho-acceptor) domain NAL94_06850 PF09308 LuxQ, periplasmic NAL94_06850 PF00072 Response regulator receiver domain NAL94_06855 PF01047 MarR family NAL94_06860 PF00529 HlyD membrane-fusion protein of T1SS NAL94_06860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_06880 PF01037 Lrp/AsnC ligand binding domain NAL94_06905 PF07549 SecD/SecF GG Motif NAL94_06905 PF13721 SecD export protein N-terminal TM region NAL94_06905 PF02355 Protein export membrane protein NAL94_06910 PF02355 Protein export membrane protein NAL94_06910 PF07549 SecD/SecF GG Motif NAL94_06920 PF01810 LysE type translocator NAL94_06925 PF00106 short chain dehydrogenase NAL94_06930 PF02803 Thiolase, C-terminal domain NAL94_06930 PF00108 Thiolase, N-terminal domain NAL94_06940 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus NAL94_06950 PF03264 NapC/NirT cytochrome c family, N-terminal region NAL94_06955 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) NAL94_06960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NAL94_06960 PF00384 Molybdopterin oxidoreductase NAL94_06960 PF01568 Molydopterin dinucleotide binding domain NAL94_06970 PF12838 4Fe-4S dicluster domain NAL94_06970 PF13187 4Fe-4S dicluster domain NAL94_06975 PF00672 HAMP domain NAL94_06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_06975 PF07730 Histidine kinase NAL94_06975 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term NAL94_06980 PF00072 Response regulator receiver domain NAL94_06980 PF00196 Bacterial regulatory proteins, luxR family NAL94_06995 PF07687 Peptidase dimerisation domain NAL94_06995 PF01546 Peptidase family M20/M25/M40 NAL94_07000 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NAL94_07005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_07010 PF00873 AcrB/AcrD/AcrF family NAL94_07015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_07015 PF00672 HAMP domain NAL94_07015 PF12729 Four helix bundle sensory module for signal transduction NAL94_07020 PF00472 RF-1 domain NAL94_07025 PF13419 Haloacid dehalogenase-like hydrolase NAL94_07030 PF01389 OmpA-like transmembrane domain NAL94_07030 PF00691 OmpA family NAL94_07035 PF00793 DAHP synthetase I family NAL94_07040 PF07690 Major Facilitator Superfamily NAL94_07045 PF08447 PAS fold NAL94_07045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_07050 PF02779 Transketolase, pyrimidine binding domain NAL94_07050 PF02780 Transketolase, C-terminal domain NAL94_07050 PF00456 Transketolase, thiamine diphosphate binding domain NAL94_07055 PF00923 Transaldolase/Fructose-6-phosphate aldolase NAL94_07065 PF00581 Rhodanese-like domain NAL94_07080 PF00899 ThiF family NAL94_07085 PF00994 Probable molybdopterin binding domain NAL94_07085 PF03454 MoeA C-terminal region (domain IV) NAL94_07085 PF03453 MoeA N-terminal region (domain I and II) NAL94_07090 PF01227 GTP cyclohydrolase I NAL94_07100 PF00654 Voltage gated chloride channel NAL94_07115 PF00248 Aldo/keto reductase family NAL94_07120 PF00072 Response regulator receiver domain NAL94_07130 PF03853 YjeF-related protein N-terminus NAL94_07130 PF01256 Carbohydrate kinase NAL94_07135 PF00478 IMP dehydrogenase / GMP reductase domain NAL94_07140 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family NAL94_07150 PF01565 FAD binding domain NAL94_07150 PF08031 Berberine and berberine like NAL94_07170 PF00551 Formyl transferase NAL94_07170 PF02911 Formyl transferase, C-terminal domain NAL94_07170 PF01370 NAD dependent epimerase/dehydratase family NAL94_07185 PF00392 Bacterial regulatory proteins, gntR family NAL94_07190 PF00144 Beta-lactamase NAL94_07195 PF00132 Bacterial transferase hexapeptide (six repeats) NAL94_07200 PF01476 LysM domain NAL94_07200 PF08525 Opacity-associated protein A N-terminal motif NAL94_07200 PF01551 Peptidase family M23 NAL94_07225 PF00158 Sigma-54 interaction domain NAL94_07225 PF02954 Bacterial regulatory protein, Fis family NAL94_07230 PF17871 AAA lid domain NAL94_07230 PF10431 C-terminal, D2-small domain, of ClpB protein NAL94_07230 PF00004 ATPase family associated with various cellular activities (AAA) NAL94_07230 PF07724 AAA domain (Cdc48 subfamily) NAL94_07235 PF05638 Type VI secretion system effector, Hcp NAL94_07240 PF04717 Type VI secretion system, phage-baseplate injector NAL94_07265 PF00069 Protein kinase domain NAL94_07280 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath NAL94_07290 PF05947 Type VI secretion system, TssF NAL94_07300 PF01037 Lrp/AsnC ligand binding domain NAL94_07330 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE NAL94_07365 PF07690 Major Facilitator Superfamily NAL94_07375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_07375 PF03466 LysR substrate binding domain NAL94_07380 PF00106 short chain dehydrogenase NAL94_07385 PF00582 Universal stress protein family NAL94_07395 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter NAL94_07395 PF00361 Proton-conducting membrane transporter NAL94_07395 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NAL94_07395 PF13244 Domain of unknown function (DUF4040) NAL94_07400 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NAL94_07405 PF00361 Proton-conducting membrane transporter NAL94_07410 PF01899 Na+/H+ ion antiporter subunit NAL94_07415 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) NAL94_07420 PF03334 Na+/H+ antiporter subunit NAL94_07425 PF07702 UTRA domain NAL94_07425 PF00392 Bacterial regulatory proteins, gntR family NAL94_07430 PF11975 Family 4 glycosyl hydrolase C-terminal domain NAL94_07430 PF02056 Family 4 glycosyl hydrolase NAL94_07435 PF00367 phosphotransferase system, EIIB NAL94_07435 PF02378 Phosphotransferase system, EIIC NAL94_07440 PF00501 AMP-binding enzyme NAL94_07440 PF13193 AMP-binding enzyme C-terminal domain NAL94_07445 PF00766 Electron transfer flavoprotein FAD-binding domain NAL94_07445 PF01012 Electron transfer flavoprotein domain NAL94_07450 PF01012 Electron transfer flavoprotein domain NAL94_07460 PF00005 ABC transporter NAL94_07460 PF12399 Branched-chain amino acid ATP-binding cassette transporter NAL94_07465 PF00501 AMP-binding enzyme NAL94_07485 PF00005 ABC transporter NAL94_07490 PF14535 AMP-binding enzyme C-terminal domain NAL94_07490 PF00501 AMP-binding enzyme NAL94_07495 PF05724 Thiopurine S-methyltransferase (TPMT) NAL94_07500 PF00106 short chain dehydrogenase NAL94_07505 PF00205 Thiamine pyrophosphate enzyme, central domain NAL94_07505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NAL94_07505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NAL94_07510 PF03306 Alpha-acetolactate decarboxylase NAL94_07515 PF03466 LysR substrate binding domain NAL94_07515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_07520 PF13419 Haloacid dehalogenase-like hydrolase NAL94_07535 PF02322 Cytochrome bd terminal oxidase subunit II NAL94_07540 PF01654 Cytochrome bd terminal oxidase subunit I NAL94_07545 PF00155 Aminotransferase class I and II NAL94_07545 PF00392 Bacterial regulatory proteins, gntR family NAL94_07555 PF12794 Mechanosensitive ion channel inner membrane domain 1 NAL94_07555 PF12795 Mechanosensitive ion channel porin domain NAL94_07555 PF00924 Mechanosensitive ion channel NAL94_07565 PF00682 HMGL-like NAL94_07570 PF00289 Biotin carboxylase, N-terminal domain NAL94_07570 PF00364 Biotin-requiring enzyme NAL94_07570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NAL94_07570 PF18140 Propionyl-coenzyme A carboxylase BT domain NAL94_07570 PF02785 Biotin carboxylase C-terminal domain NAL94_07575 PF00378 Enoyl-CoA hydratase/isomerase NAL94_07580 PF01039 Carboxyl transferase domain NAL94_07585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NAL94_07585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NAL94_07585 PF02770 Acyl-CoA dehydrogenase, middle domain NAL94_07590 PF00376 MerR family regulatory protein NAL94_07590 PF09278 MerR, DNA binding NAL94_07595 PF02803 Thiolase, C-terminal domain NAL94_07595 PF00108 Thiolase, N-terminal domain NAL94_07600 PF00171 Aldehyde dehydrogenase family NAL94_07605 PF02770 Acyl-CoA dehydrogenase, middle domain NAL94_07605 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NAL94_07605 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NAL94_07610 PF00378 Enoyl-CoA hydratase/isomerase NAL94_07620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NAL94_07620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase NAL94_07630 PF00072 Response regulator receiver domain NAL94_07630 PF00990 Diguanylate cyclase, GGDEF domain NAL94_07635 PF13977 BetI-type transcriptional repressor, C-terminal NAL94_07635 PF00440 Bacterial regulatory proteins, tetR family NAL94_07640 PF00171 Aldehyde dehydrogenase family NAL94_07645 PF05199 GMC oxidoreductase NAL94_07645 PF00732 GMC oxidoreductase NAL94_07650 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NAL94_07655 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_07660 PF00005 ABC transporter NAL94_07660 PF00571 CBS domain NAL94_07665 PF00881 Nitroreductase family NAL94_07675 PF01145 SPFH domain / Band 7 family NAL94_07675 PF16200 C-terminal region of band_7 NAL94_07685 PF03150 Di-haem cytochrome c peroxidase NAL94_07685 PF00034 Cytochrome c NAL94_07690 PF00072 Response regulator receiver domain NAL94_07690 PF09308 LuxQ, periplasmic NAL94_07690 PF00512 His Kinase A (phospho-acceptor) domain NAL94_07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_07700 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain NAL94_07700 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAL94_07710 PF04116 Fatty acid hydroxylase superfamily NAL94_07755 PF00990 Diguanylate cyclase, GGDEF domain NAL94_07755 PF00563 EAL domain NAL94_07760 PF05025 RbsD / FucU transport protein family NAL94_07765 PF00005 ABC transporter NAL94_07770 PF02653 Branched-chain amino acid transport system / permease component NAL94_07775 PF13407 Periplasmic binding protein domain NAL94_07780 PF00294 pfkB family carbohydrate kinase NAL94_07785 PF00356 Bacterial regulatory proteins, lacI family NAL94_07790 PF04973 Nicotinamide mononucleotide transporter NAL94_07795 PF01048 Phosphorylase superfamily NAL94_07805 PF01497 Periplasmic binding protein NAL94_07810 PF01032 FecCD transport family NAL94_07815 PF01032 FecCD transport family NAL94_07820 PF00005 ABC transporter NAL94_07825 PF13411 MerR HTH family regulatory protein NAL94_07835 PF07715 TonB-dependent Receptor Plug Domain NAL94_07835 PF00593 TonB dependent receptor NAL94_07865 PF12805 FUSC-like inner membrane protein yccS NAL94_07870 PF12462 DNA helicase IV / RNA helicase N terminal NAL94_07870 PF00580 UvrD/REP helicase N-terminal domain NAL94_07870 PF13361 UvrD-like helicase C-terminal domain NAL94_07875 PF02142 MGS-like domain NAL94_07880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NAL94_07885 PF01627 Hpt domain NAL94_07885 PF00072 Response regulator receiver domain NAL94_07885 PF00512 His Kinase A (phospho-acceptor) domain NAL94_07885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_07885 PF00672 HAMP domain NAL94_07900 PF00072 Response regulator receiver domain NAL94_07900 PF00486 Transcriptional regulatory protein, C terminal NAL94_07905 PF00884 Sulfatase NAL94_07910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_07910 PF03466 LysR substrate binding domain NAL94_07915 PF16385 Domain of unknown function NAL94_07915 PF00884 Sulfatase NAL94_07920 PF04055 Radical SAM superfamily NAL94_07920 PF13186 Iron-sulfur cluster-binding domain NAL94_07925 PF07726 ATPase family associated with various cellular activities (AAA) NAL94_07925 PF17863 AAA lid domain NAL94_07940 PF00092 von Willebrand factor type A domain NAL94_07945 PF11638 DnaA N-terminal domain NAL94_07945 PF08299 Bacterial dnaA protein helix-turn-helix NAL94_07945 PF00308 Bacterial dnaA protein NAL94_07950 PF02768 DNA polymerase III beta subunit, C-terminal domain NAL94_07950 PF02767 DNA polymerase III beta subunit, central domain NAL94_07950 PF00712 DNA polymerase III beta subunit, N-terminal domain NAL94_07955 PF02463 RecF/RecN/SMC N terminal domain NAL94_07960 PF00204 DNA gyrase B NAL94_07960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_07960 PF18053 DNA gyrase B subunit insert domain NAL94_07960 PF01751 Toprim domain NAL94_07960 PF00986 DNA gyrase B subunit, carboxyl terminus NAL94_07970 PF00011 Hsp20/alpha crystallin family NAL94_07975 PF00155 Aminotransferase class I and II NAL94_07980 PF00128 Alpha amylase, catalytic domain NAL94_07985 PF05746 DALR anticodon binding domain NAL94_07985 PF02092 Glycyl-tRNA synthetase beta subunit NAL94_07990 PF02091 Glycyl-tRNA synthetase alpha subunit NAL94_07995 PF01169 Uncharacterized protein family UPF0016 NAL94_08005 PF01206 Sulfurtransferase TusA NAL94_08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_08015 PF03466 LysR substrate binding domain NAL94_08020 PF00107 Zinc-binding dehydrogenase NAL94_08020 PF08240 Alcohol dehydrogenase GroES-like domain NAL94_08025 PF02803 Thiolase, C-terminal domain NAL94_08025 PF00108 Thiolase, N-terminal domain NAL94_08030 PF00378 Enoyl-CoA hydratase/isomerase NAL94_08030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAL94_08030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAL94_08035 PF01205 Uncharacterized protein family UPF0029 NAL94_08035 PF09186 Domain of unknown function (DUF1949) NAL94_08040 PF02386 Cation transport protein NAL94_08045 PF12724 Flavodoxin domain NAL94_08090 PF00394 Multicopper oxidase NAL94_08090 PF07731 Multicopper oxidase NAL94_08090 PF07732 Multicopper oxidase NAL94_08095 PF02537 CrcB-like protein, Camphor Resistance (CrcB) NAL94_08100 PF01964 Radical SAM ThiC family NAL94_08100 PF13667 ThiC-associated domain NAL94_08105 PF02581 Thiamine monophosphate synthase NAL94_08110 PF00899 ThiF family NAL94_08115 PF02597 ThiS family NAL94_08120 PF05690 Thiazole biosynthesis protein ThiG NAL94_08125 PF04055 Radical SAM superfamily NAL94_08125 PF06968 Biotin and Thiamin Synthesis associated domain NAL94_08130 PF01321 Creatinase/Prolidase N-terminal domain NAL94_08130 PF00557 Metallopeptidase family M24 NAL94_08130 PF01321 Creatinase/Prolidase N-terminal domain NAL94_08130 PF00557 Metallopeptidase family M24 NAL94_08135 PF03466 LysR substrate binding domain NAL94_08135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_08140 PF07690 Major Facilitator Superfamily NAL94_08160 PF05114 Protein of unknown function (DUF692) NAL94_08170 PF13361 UvrD-like helicase C-terminal domain NAL94_08170 PF00580 UvrD/REP helicase N-terminal domain NAL94_08180 PF01810 LysE type translocator NAL94_08190 PF00892 EamA-like transporter family NAL94_08195 PF00270 DEAD/DEAH box helicase NAL94_08195 PF00570 HRDC domain NAL94_08195 PF16124 RecQ zinc-binding NAL94_08195 PF09382 RQC domain NAL94_08195 PF00271 Helicase conserved C-terminal domain NAL94_08205 PF02592 Putative vitamin uptake transporter NAL94_08215 PF02541 Ppx/GppA phosphatase family NAL94_08220 PF00271 Helicase conserved C-terminal domain NAL94_08220 PF00270 DEAD/DEAH box helicase NAL94_08225 PF00085 Thioredoxin NAL94_08230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NAL94_08230 PF07498 Rho termination factor, N-terminal domain NAL94_08230 PF07497 Rho termination factor, RNA-binding domain NAL94_08240 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NAL94_08245 PF00111 2Fe-2S iron-sulfur cluster binding domain NAL94_08250 PF00175 Oxidoreductase NAD-binding domain NAL94_08285 PF07219 HemY protein N-terminus NAL94_08290 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase NAL94_08295 PF02602 Uroporphyrinogen-III synthase HemD NAL94_08300 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain NAL94_08300 PF03900 Porphobilinogen deaminase, C-terminal domain NAL94_08305 PF12633 Adenylate cyclase NT domain NAL94_08305 PF01295 Adenylate cyclase, class-I NAL94_08310 PF01491 Frataxin-like domain NAL94_08320 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NAL94_08320 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain NAL94_08325 PF01678 Diaminopimelate epimerase NAL94_08335 PF02899 Phage integrase, N-terminal SAM-like domain NAL94_08335 PF00589 Phage integrase family NAL94_08340 PF13419 Haloacid dehalogenase-like hydrolase NAL94_08345 PF10442 FIST C domain NAL94_08345 PF00563 EAL domain NAL94_08345 PF00990 Diguanylate cyclase, GGDEF domain NAL94_08345 PF08495 FIST N domain NAL94_08350 PF03942 DTW domain NAL94_08370 PF12146 Serine aminopeptidase, S33 NAL94_08375 PF01810 LysE type translocator NAL94_08380 PF00563 EAL domain NAL94_08380 PF08668 HDOD domain NAL94_08385 PF01022 Bacterial regulatory protein, arsR family NAL94_08390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAL94_08390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAL94_08410 PF10694 Protein of unknown function (DUF2500) NAL94_08430 PF01914 MarC family integral membrane protein NAL94_08445 PF02881 SRP54-type protein, helical bundle domain NAL94_08445 PF00448 SRP54-type protein, GTPase domain NAL94_08450 PF00005 ABC transporter NAL94_08455 PF18075 FtsX extracellular domain NAL94_08460 PF00140 Sigma-70 factor, region 1.2 NAL94_08460 PF04545 Sigma-70, region 4 NAL94_08460 PF04542 Sigma-70 region 2 NAL94_08465 PF00581 Rhodanese-like domain NAL94_08470 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease NAL94_08470 PF01694 Rhomboid family NAL94_08475 PF03748 Flagellar basal body-associated protein FliL NAL94_08480 PF04345 Chorismate lyase NAL94_08485 PF01040 UbiA prenyltransferase family NAL94_08490 PF01553 Acyltransferase NAL94_08495 PF01726 LexA DNA binding domain NAL94_08495 PF00717 Peptidase S24-like NAL94_08500 PF04072 Leucine carboxyl methyltransferase NAL94_08505 PF01554 MatE NAL94_08510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAL94_08510 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_08515 PF00440 Bacterial regulatory proteins, tetR family NAL94_08525 PF05958 tRNA (Uracil-5-)-methyltransferase NAL94_08530 PF07715 TonB-dependent Receptor Plug Domain NAL94_08530 PF00593 TonB dependent receptor NAL94_08545 PF01177 Asp/Glu/Hydantoin racemase NAL94_08610 PF13091 PLD-like domain NAL94_08620 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain NAL94_08620 PF01565 FAD binding domain NAL94_08625 PF02237 Biotin protein ligase C terminal domain NAL94_08625 PF03099 Biotin/lipoate A/B protein ligase family NAL94_08625 PF08279 HTH domain NAL94_08630 PF00485 Phosphoribulokinase / Uridine kinase family NAL94_08655 PF00009 Elongation factor Tu GTP binding domain NAL94_08655 PF03144 Elongation factor Tu domain 2 NAL94_08655 PF03143 Elongation factor Tu C-terminal domain NAL94_08660 PF00584 SecE/Sec61-gamma subunits of protein translocation complex NAL94_08665 PF02357 Transcription termination factor nusG NAL94_08665 PF00467 KOW motif NAL94_08670 PF00298 Ribosomal protein L11, RNA binding domain NAL94_08670 PF03946 Ribosomal protein L11, N-terminal domain NAL94_08675 PF00687 Ribosomal protein L1p/L10e family NAL94_08680 PF00466 Ribosomal protein L10 NAL94_08685 PF00542 Ribosomal protein L7/L12 C-terminal domain NAL94_08685 PF16320 Ribosomal protein L7/L12 dimerisation domain NAL94_08690 PF04560 RNA polymerase Rpb2, domain 7 NAL94_08690 PF00562 RNA polymerase Rpb2, domain 6 NAL94_08690 PF10385 RNA polymerase beta subunit external 1 domain NAL94_08690 PF04563 RNA polymerase beta subunit NAL94_08690 PF04561 RNA polymerase Rpb2, domain 2 NAL94_08690 PF04565 RNA polymerase Rpb2, domain 3 NAL94_08695 PF04998 RNA polymerase Rpb1, domain 5 NAL94_08695 PF05000 RNA polymerase Rpb1, domain 4 NAL94_08695 PF04983 RNA polymerase Rpb1, domain 3 NAL94_08695 PF00623 RNA polymerase Rpb1, domain 2 NAL94_08695 PF04997 RNA polymerase Rpb1, domain 1 NAL94_08700 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ NAL94_08705 PF00293 NUDIX domain NAL94_08705 PF09297 NADH pyrophosphatase zinc ribbon domain NAL94_08710 PF01208 Uroporphyrinogen decarboxylase (URO-D) NAL94_08715 PF03167 Uracil DNA glycosylase superfamily NAL94_08720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAL94_08725 PF04222 Protein of unknown function (DUF416) NAL94_08730 PF00571 CBS domain NAL94_08730 PF01595 Cyclin M transmembrane N-terminal domain NAL94_08735 PF00216 Bacterial DNA-binding protein NAL94_08745 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NAL94_08745 PF02843 Phosphoribosylglycinamide synthetase, C domain NAL94_08745 PF02844 Phosphoribosylglycinamide synthetase, N domain NAL94_08750 PF02142 MGS-like domain NAL94_08750 PF01808 AICARFT/IMPCHase bienzyme NAL94_08755 PF13411 MerR HTH family regulatory protein NAL94_08760 PF00486 Transcriptional regulatory protein, C terminal NAL94_08760 PF18500 CadC C-terminal domain 1 NAL94_08765 PF13520 Amino acid permease NAL94_08770 PF01276 Orn/Lys/Arg decarboxylase, major domain NAL94_08770 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain NAL94_08770 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain NAL94_08820 PF00005 ABC transporter NAL94_08820 PF12848 ABC transporter NAL94_08825 PF07690 Major Facilitator Superfamily NAL94_08830 PF02954 Bacterial regulatory protein, Fis family NAL94_08835 PF01207 Dihydrouridine synthase (Dus) NAL94_08845 PF02785 Biotin carboxylase C-terminal domain NAL94_08845 PF00289 Biotin carboxylase, N-terminal domain NAL94_08845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NAL94_08850 PF00364 Biotin-requiring enzyme NAL94_08855 PF01220 Dehydroquinase class II NAL94_08860 PF13193 AMP-binding enzyme C-terminal domain NAL94_08860 PF16177 Acetyl-coenzyme A synthetase N-terminus NAL94_08860 PF00501 AMP-binding enzyme NAL94_08875 PF12832 MFS_1 like family NAL94_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_08880 PF00512 His Kinase A (phospho-acceptor) domain NAL94_08880 PF09308 LuxQ, periplasmic NAL94_08880 PF00072 Response regulator receiver domain NAL94_08885 PF00206 Lyase NAL94_08885 PF10415 Fumarase C C-terminus NAL94_08900 PF00474 Sodium:solute symporter family NAL94_08910 PF00999 Sodium/hydrogen exchanger family NAL94_08910 PF02080 TrkA-C domain NAL94_08910 PF03471 Transporter associated domain NAL94_08915 PF00196 Bacterial regulatory proteins, luxR family NAL94_08915 PF00072 Response regulator receiver domain NAL94_08920 PF11412 Disulphide bond corrector protein DsbC NAL94_08920 PF02683 Cytochrome C biogenesis protein transmembrane region NAL94_08925 PF03605 Anaerobic c4-dicarboxylate membrane transporter NAL94_08930 PF00206 Lyase NAL94_08930 PF10415 Fumarase C C-terminus NAL94_08935 PF04186 FxsA cytoplasmic membrane protein NAL94_08940 PF00588 SpoU rRNA Methylase family NAL94_08945 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NAL94_08945 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NAL94_08950 PF16527 Two-component sensor protein CpxA, periplasmic domain NAL94_08950 PF00672 HAMP domain NAL94_08950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_08950 PF00512 His Kinase A (phospho-acceptor) domain NAL94_08955 PF00486 Transcriptional regulatory protein, C terminal NAL94_08955 PF00072 Response regulator receiver domain NAL94_08960 PF07813 LTXXQ motif family protein NAL94_08965 PF16916 Dimerisation domain of Zinc Transporter NAL94_08965 PF01545 Cation efflux family NAL94_08970 PF00365 Phosphofructokinase NAL94_08975 PF01554 MatE NAL94_08980 PF00166 Chaperonin 10 Kd subunit NAL94_08985 PF00118 TCP-1/cpn60 chaperonin family NAL94_08995 PF02308 MgtC family NAL94_09000 PF04055 Radical SAM superfamily NAL94_09005 PF09285 Elongation factor P, C-terminal NAL94_09005 PF01132 Elongation factor P (EF-P) OB domain NAL94_09005 PF08207 Elongation factor P (EF-P) KOW-like domain NAL94_09015 PF02313 Fumarate reductase subunit D NAL94_09020 PF02300 Fumarate reductase subunit C NAL94_09025 PF13183 4Fe-4S dicluster domain NAL94_09025 PF13085 2Fe-2S iron-sulfur cluster binding domain NAL94_09030 PF02910 Fumarate reductase flavoprotein C-term NAL94_09030 PF00890 FAD binding domain NAL94_09035 PF00152 tRNA synthetases class II (D, K and N) NAL94_09045 PF08360 QacR-like protein, C-terminal region NAL94_09045 PF00440 Bacterial regulatory proteins, tetR family NAL94_09055 PF01551 Peptidase family M23 NAL94_09060 PF00132 Bacterial transferase hexapeptide (six repeats) NAL94_09060 PF06426 Serine acetyltransferase, N-terminal NAL94_09065 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus NAL94_09065 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAL94_09070 PF02556 Preprotein translocase subunit SecB NAL94_09075 PF00581 Rhodanese-like domain NAL94_09080 PF06415 BPG-independent PGAM N-terminus (iPGM_N) NAL94_09080 PF01676 Metalloenzyme superfamily NAL94_09090 PF00939 Sodium:sulfate symporter transmembrane region NAL94_09095 PF02666 Phosphatidylserine decarboxylase NAL94_09100 PF03193 RsgA GTPase NAL94_09105 PF00929 Exonuclease NAL94_09170 PF08331 Domain of unknown function (DUF1730) NAL94_09175 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE NAL94_09180 PF01520 N-acetylmuramoyl-L-alanine amidase NAL94_09185 PF08676 MutL C terminal dimerisation domain NAL94_09185 PF01119 DNA mismatch repair protein, C-terminal domain NAL94_09195 PF17209 Hfq protein NAL94_09200 PF16360 GTP-binding GTPase Middle Region NAL94_09200 PF01926 50S ribosome-binding GTPase NAL94_09200 PF13167 GTP-binding GTPase N-terminal NAL94_09205 PF12221 Bacterial membrane protein N terminal NAL94_09205 PF01145 SPFH domain / Band 7 family NAL94_09210 PF01145 SPFH domain / Band 7 family NAL94_09215 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) NAL94_09220 PF00709 Adenylosuccinate synthetase NAL94_09225 PF08238 Sel1 repeat NAL94_09230 PF00970 Oxidoreductase FAD-binding domain NAL94_09230 PF00042 Globin NAL94_09230 PF00175 Oxidoreductase NAD-binding domain NAL94_09235 PF02082 Transcriptional regulator NAL94_09240 PF08461 Ribonuclease R winged-helix domain NAL94_09240 PF08206 Ribonuclease B OB domain NAL94_09240 PF17876 Cold shock domain NAL94_09240 PF00575 S1 RNA binding domain NAL94_09240 PF00773 RNB domain NAL94_09245 PF00588 SpoU rRNA Methylase family NAL94_09245 PF08032 RNA 2'-O ribose methyltransferase substrate binding NAL94_09250 PF13419 Haloacid dehalogenase-like hydrolase NAL94_09255 PF00579 tRNA synthetases class I (W and Y) NAL94_09270 PF00117 Glutamine amidotransferase class-I NAL94_09275 PF00202 Aminotransferase class-III NAL94_09280 PF04958 Arginine N-succinyltransferase beta subunit NAL94_09285 PF00171 Aldehyde dehydrogenase family NAL94_09295 PF13545 Crp-like helix-turn-helix domain NAL94_09295 PF00027 Cyclic nucleotide-binding domain NAL94_09300 PF00485 Phosphoribulokinase / Uridine kinase family NAL94_09305 PF06794 Uncharacterised protein family (UPF0270) NAL94_09310 PF00561 alpha/beta hydrolase fold NAL94_09320 PF12848 ABC transporter NAL94_09320 PF00005 ABC transporter NAL94_09325 PF02525 Flavodoxin-like fold NAL94_09330 PF00999 Sodium/hydrogen exchanger family NAL94_09330 PF02254 TrkA-N domain NAL94_09340 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NAL94_09345 PF01112 Asparaginase NAL94_09350 PF04102 SlyX NAL94_09360 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NAL94_09360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NAL94_09365 PF13309 HTH domain NAL94_09365 PF08348 YheO-like PAS domain NAL94_09370 PF02635 DsrE/DsrF-like family NAL94_09375 PF02635 DsrE/DsrF-like family NAL94_09380 PF04077 DsrH like protein NAL94_09385 PF00164 Ribosomal protein S12/S23 NAL94_09390 PF00177 Ribosomal protein S7p/S5e NAL94_09395 PF14492 Elongation Factor G, domain II NAL94_09395 PF03144 Elongation factor Tu domain 2 NAL94_09395 PF00679 Elongation factor G C-terminus NAL94_09395 PF00009 Elongation factor Tu GTP binding domain NAL94_09395 PF03764 Elongation factor G, domain IV NAL94_09400 PF00009 Elongation factor Tu GTP binding domain NAL94_09400 PF03144 Elongation factor Tu domain 2 NAL94_09400 PF03143 Elongation factor Tu C-terminal domain NAL94_09405 PF04324 BFD-like [2Fe-2S] binding domain NAL94_09410 PF00210 Ferritin-like domain NAL94_09415 PF00390 Malic enzyme, N-terminal domain NAL94_09415 PF03949 Malic enzyme, NAD binding domain NAL94_09420 PF01340 Met Apo-repressor, MetJ NAL94_09425 PF01053 Cys/Met metabolism PLP-dependent enzyme NAL94_09430 PF00696 Amino acid kinase family NAL94_09430 PF00742 Homoserine dehydrogenase NAL94_09430 PF03447 Homoserine dehydrogenase, NAD binding domain NAL94_09435 PF02219 Methylenetetrahydrofolate reductase NAL94_09445 PF00311 Phosphoenolpyruvate carboxylase NAL94_09450 PF07687 Peptidase dimerisation domain NAL94_09450 PF01546 Peptidase family M20/M25/M40 NAL94_09455 PF01118 Semialdehyde dehydrogenase, NAD binding domain NAL94_09455 PF02774 Semialdehyde dehydrogenase, dimerisation domain NAL94_09460 PF00696 Amino acid kinase family NAL94_09465 PF00764 Arginosuccinate synthase NAL94_09470 PF00583 Acetyltransferase (GNAT) family NAL94_09470 PF14698 Argininosuccinate lyase C-terminal NAL94_09470 PF00206 Lyase NAL94_09480 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_09480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAL94_09485 PF00462 Glutaredoxin NAL94_09485 PF08534 Redoxin NAL94_09490 PF03466 LysR substrate binding domain NAL94_09490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_09495 PF17092 Penicillin-binding protein OB-like domain NAL94_09495 PF00912 Transglycosylase NAL94_09495 PF00905 Penicillin binding protein transpeptidase domain NAL94_09515 PF04351 Pilus assembly protein, PilP NAL94_09520 PF11741 AMIN domain NAL94_09520 PF00263 Bacterial type II and III secretion system protein NAL94_09520 PF03958 Bacterial type II/III secretion system short domain NAL94_09520 PF07660 Secretin and TonB N terminus short domain NAL94_09525 PF01202 Shikimate kinase NAL94_09530 PF01761 3-dehydroquinate synthase NAL94_09540 PF02086 D12 class N6 adenine-specific DNA methyltransferase NAL94_09545 PF00834 Ribulose-phosphate 3 epimerase family NAL94_09550 PF01250 Ribosomal protein S6 NAL94_09555 PF00436 Single-strand binding protein family NAL94_09560 PF01084 Ribosomal protein S18 NAL94_09565 PF03948 Ribosomal protein L9, C-terminal domain NAL94_09565 PF01281 Ribosomal protein L9, N-terminal domain NAL94_09575 PF00772 DnaB-like helicase N terminal domain NAL94_09575 PF03796 DnaB-like helicase C terminal domain NAL94_09580 PF00842 Alanine racemase, C-terminal domain NAL94_09580 PF01168 Alanine racemase, N-terminal domain NAL94_09585 PF01894 Uncharacterised protein family UPF0047 NAL94_09590 PF00342 Phosphoglucose isomerase NAL94_09600 PF01475 Ferric uptake regulator family NAL94_09605 PF01207 Dihydrouridine synthase (Dus) NAL94_09625 PF00258 Flavodoxin NAL94_09625 PF00175 Oxidoreductase NAD-binding domain NAL94_09625 PF00667 FAD binding domain NAL94_09630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain NAL94_09630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain NAL94_09635 PF01507 Phosphoadenosine phosphosulfate reductase family NAL94_09690 PF00999 Sodium/hydrogen exchanger family NAL94_09695 PF02574 Homocysteine S-methyltransferase NAL94_09695 PF00809 Pterin binding enzyme NAL94_09695 PF02965 Vitamin B12 dependent methionine synthase, activation domain NAL94_09695 PF02310 B12 binding domain NAL94_09695 PF02607 B12 binding domain NAL94_09700 PF01842 ACT domain NAL94_09700 PF00696 Amino acid kinase family NAL94_09705 PF00266 Aminotransferase class-V NAL94_09715 PF17755 UvrA DNA-binding domain NAL94_09715 PF00005 ABC transporter NAL94_09715 PF17760 UvrA interaction domain NAL94_09720 PF00483 Nucleotidyl transferase NAL94_09725 PF00196 Bacterial regulatory proteins, luxR family NAL94_09730 PF00436 Single-strand binding protein family NAL94_09735 PF17157 Gammaproteobacterial periplasmic sensor domain NAL94_09735 PF00990 Diguanylate cyclase, GGDEF domain NAL94_09735 PF00563 EAL domain NAL94_09755 PF00263 Bacterial type II and III secretion system protein NAL94_09755 PF03958 Bacterial type II/III secretion system short domain NAL94_09760 PF13401 AAA domain NAL94_09760 PF01471 Putative peptidoglycan binding domain NAL94_09770 PF00437 Type II/IV secretion system protein NAL94_09770 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NAL94_09775 PF00482 Type II secretion system (T2SS), protein F NAL94_09785 PF07963 Prokaryotic N-terminal methylation motif NAL94_09825 PF04085 rod shape-determining protein MreC NAL94_09830 PF04093 rod shape-determining protein MreD NAL94_09835 PF02545 Maf-like protein NAL94_09840 PF10150 Ribonuclease E/G family NAL94_09840 PF00575 S1 RNA binding domain NAL94_09845 PF13502 AsmA-like C-terminal region NAL94_09845 PF13116 Protein of unknown function NAL94_09850 PF00795 Carbon-nitrogen hydrolase NAL94_09855 PF01523 Putative modulator of DNA gyrase NAL94_09860 PF02562 PhoH-like protein NAL94_09860 PF13638 PIN domain NAL94_09865 PF00271 Helicase conserved C-terminal domain NAL94_09865 PF12137 RNA polymerase recycling family C-terminal NAL94_09865 PF00176 SNF2 family N-terminal domain NAL94_09865 PF18339 RapA N-terminal Tudor like domain 1 NAL94_09865 PF18337 RapA N-terminal Tudor like domain NAL94_09875 PF00849 RNA pseudouridylate synthase NAL94_09880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAL94_09880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAL94_09885 PF04751 Protein of unknown function (DUF615) NAL94_09890 PF01523 Putative modulator of DNA gyrase NAL94_09895 PF00571 CBS domain NAL94_09895 PF01769 Divalent cation transporter NAL94_09895 PF03448 MgtE intracellular N domain NAL94_09900 PF00381 PTS HPr component phosphorylation site NAL94_09905 PF03668 P-loop ATPase protein family NAL94_09910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NAL94_09915 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NAL94_09920 PF00309 Sigma-54 factor, Activator interacting domain (AID) NAL94_09920 PF04963 Sigma-54 factor, core binding domain NAL94_09920 PF04552 Sigma-54, DNA binding domain NAL94_09925 PF00005 ABC transporter NAL94_09925 PF12399 Branched-chain amino acid ATP-binding cassette transporter NAL94_09930 PF03968 OstA-like protein NAL94_09940 PF01380 SIS domain NAL94_09940 PF00571 CBS domain NAL94_09945 PF01699 Sodium/calcium exchanger protein NAL94_09950 PF00005 ABC transporter NAL94_09955 PF02405 Permease MlaE NAL94_09960 PF02470 MlaD protein NAL94_09965 PF05494 MlaC protein NAL94_09975 PF01722 BolA-like protein NAL94_09980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NAL94_09985 PF01553 Acyltransferase NAL94_09990 PF01042 Endoribonuclease L-PSP NAL94_09995 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain NAL94_09995 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain NAL94_10000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NAL94_10000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NAL94_10005 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain NAL94_10005 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain NAL94_10015 PF06877 Regulator of ribonuclease activity B NAL94_10025 PF00583 Acetyltransferase (GNAT) family NAL94_10035 PF10458 Valyl tRNA synthetase tRNA binding arm NAL94_10035 PF00133 tRNA synthetases class I (I, L, M and V) NAL94_10035 PF08264 Anticodon-binding domain of tRNA NAL94_10040 PF04364 DNA polymerase III chi subunit, HolC NAL94_10045 PF00883 Cytosol aminopeptidase family, catalytic domain NAL94_10045 PF02789 Cytosol aminopeptidase family, N-terminal domain NAL94_10050 PF03739 Lipopolysaccharide export system permease LptF/LptG NAL94_10055 PF03739 Lipopolysaccharide export system permease LptF/LptG NAL94_10065 PF10011 Predicted membrane protein (DUF2254) NAL94_10080 PF01522 Polysaccharide deacetylase NAL94_10085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NAL94_10090 PF02378 Phosphotransferase system, EIIC NAL94_10095 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit NAL94_10100 PF11975 Family 4 glycosyl hydrolase C-terminal domain NAL94_10100 PF02056 Family 4 glycosyl hydrolase NAL94_10105 PF04794 YdjC-like protein NAL94_10110 PF00356 Bacterial regulatory proteins, lacI family NAL94_10160 PF00171 Aldehyde dehydrogenase family NAL94_10190 PF00672 HAMP domain NAL94_10190 PF17200 Single Cache domain 2 NAL94_10190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_10230 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain NAL94_10230 PF01464 Transglycosylase SLT domain NAL94_10235 PF04362 Bacterial Fe(2+) trafficking NAL94_10240 PF00730 HhH-GPD superfamily base excision DNA repair protein NAL94_10240 PF00633 Helix-hairpin-helix motif NAL94_10240 PF14815 NUDIX domain NAL94_10245 PF02390 Putative methyltransferase NAL94_10250 PF02086 D12 class N6 adenine-specific DNA methyltransferase NAL94_10255 PF04960 Glutaminase NAL94_10260 PF06969 HemN C-terminal domain NAL94_10260 PF04055 Radical SAM superfamily NAL94_10265 PF01725 Ham1 family NAL94_10275 PF02594 Uncharacterised ACR, YggU family COG1872 NAL94_10280 PF02325 YGGT family NAL94_10285 PF14748 Pyrroline-5-carboxylate reductase dimerisation NAL94_10285 PF03807 NADP oxidoreductase coenzyme F420-dependent NAL94_10290 PF01168 Alanine racemase, N-terminal domain NAL94_10295 PF00437 Type II/IV secretion system protein NAL94_10300 PF00437 Type II/IV secretion system protein NAL94_10305 PF03652 Holliday junction resolvase NAL94_10310 PF02622 Uncharacterized ACR, COG1678 NAL94_10315 PF02951 Prokaryotic glutathione synthetase, N-terminal domain NAL94_10315 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain NAL94_10320 PF04452 RNA methyltransferase NAL94_10325 PF04231 Endonuclease I NAL94_10330 PF10263 SprT-like family NAL94_10330 PF17283 SprT-like zinc ribbon domain NAL94_10340 PF00438 S-adenosylmethionine synthetase, N-terminal domain NAL94_10340 PF02773 S-adenosylmethionine synthetase, C-terminal domain NAL94_10340 PF02772 S-adenosylmethionine synthetase, central domain NAL94_10345 PF00456 Transketolase, thiamine diphosphate binding domain NAL94_10345 PF02780 Transketolase, C-terminal domain NAL94_10345 PF02779 Transketolase, pyrimidine binding domain NAL94_10350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_10350 PF03466 LysR substrate binding domain NAL94_10355 PF00593 TonB dependent receptor NAL94_10355 PF07715 TonB-dependent Receptor Plug Domain NAL94_10360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAL94_10360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAL94_10365 PF00162 Phosphoglycerate kinase NAL94_10370 PF01116 Fructose-bisphosphate aldolase class-II NAL94_10375 PF00924 Mechanosensitive ion channel NAL94_10375 PF05552 Conserved TM helix NAL94_10385 PF01810 LysE type translocator NAL94_10390 PF03466 LysR substrate binding domain NAL94_10390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_10395 PF04402 Protein of unknown function (DUF541) NAL94_10400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAL94_10400 PF01842 ACT domain NAL94_10400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAL94_10405 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) NAL94_10410 PF01812 5-formyltetrahydrofolate cyclo-ligase family NAL94_10420 PF05164 Cell division protein ZapA NAL94_10425 PF03695 Uncharacterised protein family (UPF0149) NAL94_10430 PF01494 FAD binding domain NAL94_10435 PF01494 FAD binding domain NAL94_10450 PF01571 Aminomethyltransferase folate-binding domain NAL94_10455 PF03937 Flavinator of succinate dehydrogenase NAL94_10460 PF02910 Fumarate reductase flavoprotein C-term NAL94_10460 PF00890 FAD binding domain NAL94_10465 PF04542 Sigma-70 region 2 NAL94_10465 PF08281 Sigma-70, region 4 NAL94_10470 PF03872 Anti sigma-E protein RseA, N-terminal domain NAL94_10470 PF03873 Anti sigma-E protein RseA, C-terminal domain NAL94_10475 PF17188 MucB/RseB C-terminal domain NAL94_10475 PF03888 MucB/RseB N-terminal domain NAL94_10485 PF06421 GTP-binding protein LepA C-terminus NAL94_10485 PF03144 Elongation factor Tu domain 2 NAL94_10485 PF00009 Elongation factor Tu GTP binding domain NAL94_10485 PF00679 Elongation factor G C-terminus NAL94_10490 PF10502 Signal peptidase, peptidase S26 NAL94_10495 PF14622 Ribonuclease-III-like NAL94_10495 PF00035 Double-stranded RNA binding motif NAL94_10500 PF01926 50S ribosome-binding GTPase NAL94_10500 PF07650 KH domain NAL94_10505 PF02565 Recombination protein O C terminal NAL94_10505 PF11967 Recombination protein O N terminal NAL94_10510 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ NAL94_10515 PF01648 4'-phosphopantetheinyl transferase superfamily NAL94_10520 PF00672 HAMP domain NAL94_10520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NAL94_10520 PF00512 His Kinase A (phospho-acceptor) domain NAL94_10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_10520 PF00072 Response regulator receiver domain NAL94_10520 PF01627 Hpt domain NAL94_10525 PF05958 tRNA (Uracil-5-)-methyltransferase NAL94_10525 PF01938 TRAM domain NAL94_10530 PF04607 Region found in RelA / SpoT proteins NAL94_10530 PF02824 TGS domain NAL94_10530 PF13291 ACT domain NAL94_10535 PF03819 MazG nucleotide pyrophosphohydrolase domain NAL94_10540 PF00117 Glutamine amidotransferase class-I NAL94_10540 PF06418 CTP synthase N-terminus NAL94_10545 PF03952 Enolase, N-terminal domain NAL94_10545 PF00113 Enolase, C-terminal TIM barrel domain NAL94_10550 PF04977 Septum formation initiator NAL94_10555 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NAL94_10560 PF02542 YgbB family NAL94_10565 PF01142 tRNA pseudouridine synthase D (TruD) NAL94_10570 PF01975 Survival protein SurE NAL94_10580 PF01476 LysM domain NAL94_10580 PF01551 Peptidase family M23 NAL94_10585 PF04539 Sigma-70 region 3 NAL94_10585 PF04545 Sigma-70, region 4 NAL94_10585 PF00140 Sigma-70 factor, region 1.2 NAL94_10585 PF04542 Sigma-70 region 2 NAL94_10590 PF05190 MutS family domain IV NAL94_10590 PF01624 MutS domain I NAL94_10590 PF05188 MutS domain II NAL94_10590 PF05192 MutS domain III NAL94_10590 PF00488 MutS domain V NAL94_10595 PF02464 Competence-damaged protein NAL94_10600 PF00154 recA bacterial DNA recombination protein NAL94_10605 PF02631 RecX family NAL94_10610 PF02272 DHHA1 domain NAL94_10610 PF01411 tRNA synthetases class II (A) NAL94_10610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NAL94_10615 PF00696 Amino acid kinase family NAL94_10615 PF01842 ACT domain NAL94_10615 PF13840 ACT domain NAL94_10620 PF02599 Global regulator protein family NAL94_10675 PF04277 Oxaloacetate decarboxylase, gamma chain NAL94_10680 PF00364 Biotin-requiring enzyme NAL94_10680 PF00682 HMGL-like NAL94_10680 PF02436 Conserved carboxylase domain NAL94_10685 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit NAL94_10690 PF08240 Alcohol dehydrogenase GroES-like domain NAL94_10690 PF00107 Zinc-binding dehydrogenase NAL94_10695 PF09335 SNARE associated Golgi protein NAL94_10700 PF00675 Insulinase (Peptidase family M16) NAL94_10700 PF05193 Peptidase M16 inactive domain NAL94_10705 PF04262 Glutamate-cysteine ligase NAL94_10715 PF02664 S-Ribosylhomocysteinase (LuxS) NAL94_10720 PF00571 CBS domain NAL94_10720 PF03471 Transporter associated domain NAL94_10720 PF01595 Cyclin M transmembrane N-terminal domain NAL94_10725 PF01578 Cytochrome C assembly protein NAL94_10730 PF02881 SRP54-type protein, helical bundle domain NAL94_10730 PF00448 SRP54-type protein, GTPase domain NAL94_10730 PF02978 Signal peptide binding domain NAL94_10735 PF00886 Ribosomal protein S16 NAL94_10740 PF01782 RimM N-terminal domain NAL94_10740 PF05239 PRC-barrel domain NAL94_10745 PF01746 tRNA (Guanine-1)-methyltransferase NAL94_10750 PF01245 Ribosomal protein L19 NAL94_10755 PF03884 DNA gyrase inhibitor YacG NAL94_10760 PF07072 Cell division protein NAL94_10765 PF01121 Dephospho-CoA kinase NAL94_10770 PF06750 Bacterial Peptidase A24 N-terminal domain NAL94_10770 PF01478 Type IV leader peptidase family NAL94_10775 PF00482 Type II secretion system (T2SS), protein F NAL94_10780 PF00437 Type II/IV secretion system protein NAL94_10780 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain NAL94_10785 PF00114 Pilin (bacterial filament) NAL94_10785 PF07963 Prokaryotic N-terminal methylation motif NAL94_10790 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain NAL94_10790 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain NAL94_10795 PF01510 N-acetylmuramoyl-L-alanine amidase NAL94_10800 PF00392 Bacterial regulatory proteins, gntR family NAL94_10800 PF07729 FCD domain NAL94_10805 PF00456 Transketolase, thiamine diphosphate binding domain NAL94_10805 PF17831 Pyruvate dehydrogenase E1 component middle domain NAL94_10810 PF02817 e3 binding domain NAL94_10810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NAL94_10810 PF00364 Biotin-requiring enzyme NAL94_10815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAL94_10815 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_10820 PF00440 Bacterial regulatory proteins, tetR family NAL94_10825 PF00156 Phosphoribosyl transferase domain NAL94_10830 PF00484 Carbonic anhydrase NAL94_10835 PF00916 Sulfate permease family NAL94_10835 PF01740 STAS domain NAL94_10840 PF00005 ABC transporter NAL94_10845 PF01061 ABC-2 type transporter NAL94_10850 PF03279 Bacterial lipid A biosynthesis acyltransferase NAL94_10855 PF02569 Pantoate-beta-alanine ligase NAL94_10860 PF02548 Ketopantoate hydroxymethyltransferase NAL94_10865 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NAL94_10870 PF12627 Probable RNA and SrmB- binding site of polymerase A NAL94_10870 PF12626 Polymerase A arginine-rich C-terminus NAL94_10870 PF01743 Poly A polymerase head domain NAL94_10875 PF00749 tRNA synthetases class I (E and Q), catalytic domain NAL94_10880 PF01258 Prokaryotic dksA/traR C4-type zinc finger NAL94_10885 PF17746 SfsA N-terminal OB domain NAL94_10885 PF03749 Sugar fermentation stimulation protein RE domain NAL94_10890 PF08482 ATP-dependent helicase C-terminal NAL94_10890 PF00271 Helicase conserved C-terminal domain NAL94_10890 PF04408 Helicase associated domain (HA2) NAL94_10890 PF00270 DEAD/DEAH box helicase NAL94_10895 PF00905 Penicillin binding protein transpeptidase domain NAL94_10895 PF14814 Bifunctional transglycosylase second domain NAL94_10895 PF00912 Transglycosylase NAL94_10900 PF01734 Patatin-like phospholipase NAL94_10905 PF00330 Aconitase family (aconitate hydratase) NAL94_10905 PF11791 Aconitate B N-terminal domain NAL94_10905 PF06434 Aconitate hydratase 2 N-terminus NAL94_10910 PF06062 Uncharacterised protein family (UPF0231) NAL94_10915 PF00543 Nitrogen regulatory protein P-II NAL94_10920 PF00909 Ammonium Transporter Family NAL94_10925 PF13416 Bacterial extracellular solute-binding protein NAL94_10935 PF00005 ABC transporter NAL94_10935 PF08402 TOBE domain NAL94_10940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NAL94_10940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NAL94_10940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NAL94_10940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NAL94_10945 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain NAL94_10945 PF06165 Glycosyltransferase family 36 NAL94_10950 PF02838 Glycosyl hydrolase family 20, domain 2 NAL94_10950 PF00728 Glycosyl hydrolase family 20, catalytic domain NAL94_10955 PF01869 BadF/BadG/BcrA/BcrD ATPase family NAL94_10965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_10965 PF00005 ABC transporter NAL94_10970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_10970 PF00005 ABC transporter NAL94_10975 PF12911 N-terminal TM domain of oligopeptide transport permease C NAL94_10975 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_10980 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_10985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_10990 PF00072 Response regulator receiver domain NAL94_10990 PF09308 LuxQ, periplasmic NAL94_10990 PF00512 His Kinase A (phospho-acceptor) domain NAL94_10990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_10995 PF05175 Methyltransferase small domain NAL94_10995 PF08468 Methyltransferase small domain N-terminal NAL94_11000 PF01594 AI-2E family transporter NAL94_11005 PF00202 Aminotransferase class-III NAL94_11010 PF01521 Iron-sulphur cluster biosynthesis NAL94_11020 PF00873 AcrB/AcrD/AcrF family NAL94_11025 PF01551 Peptidase family M23 NAL94_11025 PF08525 Opacity-associated protein A N-terminal motif NAL94_11025 PF01476 LysM domain NAL94_11030 PF00579 tRNA synthetases class I (W and Y) NAL94_11040 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family NAL94_11045 PF13609 Gram-negative porin NAL94_11050 PF03449 Transcription elongation factor, N-terminal NAL94_11050 PF01272 Transcription elongation factor, GreA/GreB, C-term NAL94_11055 PF01985 CRS1 / YhbY (CRM) domain NAL94_11060 PF01728 FtsJ-like methyltransferase NAL94_11065 PF17862 AAA+ lid domain NAL94_11065 PF00004 ATPase family associated with various cellular activities (AAA) NAL94_11065 PF01434 Peptidase family M41 NAL94_11065 PF06480 FtsH Extracellular NAL94_11070 PF00809 Pterin binding enzyme NAL94_11075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NAL94_11075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NAL94_11075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NAL94_11075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NAL94_11080 PF03840 Preprotein translocase SecG subunit NAL94_11095 PF02576 RimP N-terminal domain NAL94_11095 PF17384 RimP C-terminal SH3 domain NAL94_11100 PF13184 NusA-like KH domain NAL94_11100 PF08529 NusA N-terminal domain NAL94_11100 PF00575 S1 RNA binding domain NAL94_11105 PF00009 Elongation factor Tu GTP binding domain NAL94_11105 PF11987 Translation-initiation factor 2 NAL94_11105 PF08364 Bacterial translation initiation factor IF-2 associated region NAL94_11105 PF04760 Translation initiation factor IF-2, N-terminal region NAL94_11110 PF02033 Ribosome-binding factor A NAL94_11115 PF01509 TruB family pseudouridylate synthase (N terminal domain) NAL94_11115 PF16198 tRNA pseudouridylate synthase B C-terminal domain NAL94_11115 PF09157 Pseudouridine synthase II TruB, C-terminal NAL94_11120 PF00312 Ribosomal protein S15 NAL94_11125 PF00013 KH domain NAL94_11125 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain NAL94_11125 PF01138 3' exoribonuclease family, domain 1 NAL94_11125 PF03725 3' exoribonuclease family, domain 2 NAL94_11125 PF00575 S1 RNA binding domain NAL94_11130 PF07719 Tetratricopeptide repeat NAL94_11130 PF13181 Tetratricopeptide repeat NAL94_11140 PF01554 MatE NAL94_11145 PF01136 Peptidase family U32 NAL94_11150 PF01136 Peptidase family U32 NAL94_11155 PF00563 EAL domain NAL94_11155 PF00990 Diguanylate cyclase, GGDEF domain NAL94_11155 PF03707 Bacterial signalling protein N terminal repeat NAL94_11160 PF02036 SCP-2 sterol transfer family NAL94_11165 PF13508 Acetyltransferase (GNAT) domain NAL94_11185 PF00009 Elongation factor Tu GTP binding domain NAL94_11185 PF03144 Elongation factor Tu domain 2 NAL94_11185 PF16658 Class II release factor RF3, C-terminal domain NAL94_11195 PF01026 TatD related DNase NAL94_11200 PF07670 Nucleoside recognition NAL94_11200 PF07662 Na+ dependent nucleoside transporter C-terminus NAL94_11200 PF01773 Na+ dependent nucleoside transporter N-terminus NAL94_11205 PF01791 DeoC/LacD family aldolase NAL94_11210 PF02885 Glycosyl transferase family, helical bundle domain NAL94_11210 PF00591 Glycosyl transferase family, a/b domain NAL94_11210 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain NAL94_11215 PF01676 Metalloenzyme superfamily NAL94_11220 PF01048 Phosphorylase superfamily NAL94_11230 PF18429 Domain of unknown function (DUF5609) NAL94_11240 PF18073 Rubredoxin metal binding domain NAL94_11245 PF00679 Elongation factor G C-terminus NAL94_11245 PF14492 Elongation Factor G, domain II NAL94_11245 PF03144 Elongation factor Tu domain 2 NAL94_11245 PF03764 Elongation factor G, domain IV NAL94_11245 PF00009 Elongation factor Tu GTP binding domain NAL94_11250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_11250 PF03466 LysR substrate binding domain NAL94_11260 PF00501 AMP-binding enzyme NAL94_11290 PF00196 Bacterial regulatory proteins, luxR family NAL94_11300 PF03466 LysR substrate binding domain NAL94_11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_11305 PF00356 Bacterial regulatory proteins, lacI family NAL94_11325 PF01544 CorA-like Mg2+ transporter protein NAL94_11330 PF01266 FAD dependent oxidoreductase NAL94_11330 PF16901 C-terminal domain of alpha-glycerophosphate oxidase NAL94_11335 PF00455 DeoR C terminal sensor domain NAL94_11335 PF08220 DeoR-like helix-turn-helix domain NAL94_11340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain NAL94_11340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain NAL94_11345 PF00230 Major intrinsic protein NAL94_11350 PF07690 Major Facilitator Superfamily NAL94_11355 PF03009 Glycerophosphoryl diester phosphodiesterase family NAL94_11360 PF14602 Hexapeptide repeat of succinyl-transferase NAL94_11360 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle NAL94_11375 PF07130 YebG protein NAL94_11380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_11380 PF03466 LysR substrate binding domain NAL94_11390 PF11893 Domain of unknown function (DUF3413) NAL94_11390 PF00884 Sulfatase NAL94_11395 PF17946 RecC C-terminal domain NAL94_11400 PF12705 PD-(D/E)XK nuclease superfamily NAL94_11400 PF13361 UvrD-like helicase C-terminal domain NAL94_11400 PF00580 UvrD/REP helicase N-terminal domain NAL94_11405 PF13538 UvrD-like helicase C-terminal domain NAL94_11415 PF00696 Amino acid kinase family NAL94_11415 PF00583 Acetyltransferase (GNAT) family NAL94_11425 PF03562 MltA specific insert domain NAL94_11425 PF06725 3D domain NAL94_11430 PF00899 ThiF family NAL94_11435 PF02657 Fe-S metabolism associated domain NAL94_11440 PF17158 Membrane-associated sensor, integral membrane domain NAL94_11440 PF00990 Diguanylate cyclase, GGDEF domain NAL94_11445 PF00266 Aminotransferase class-V NAL94_11450 PF01965 DJ-1/PfpI family NAL94_11455 PF02558 Ketopantoate reductase PanE/ApbA NAL94_11455 PF08546 Ketopantoate reductase PanE/ApbA C terminal NAL94_11460 PF03502 Nucleoside-specific channel-forming protein, Tsx NAL94_11475 PF04542 Sigma-70 region 2 NAL94_11475 PF04545 Sigma-70, region 4 NAL94_11485 PF07690 Major Facilitator Superfamily NAL94_11490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NAL94_11495 PF03923 Uncharacterized lipoprotein NAL94_11495 PF08139 Prokaryotic membrane lipoprotein lipid attachment site NAL94_11500 PF05175 Methyltransferase small domain NAL94_11505 PF01722 BolA-like protein NAL94_11510 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) NAL94_11510 PF11973 NQRA C-terminal domain NAL94_11515 PF03116 NQR2, RnfD, RnfE family NAL94_11520 PF04205 FMN-binding domain NAL94_11525 PF02508 Rnf-Nqr subunit, membrane protein NAL94_11530 PF02508 Rnf-Nqr subunit, membrane protein NAL94_11535 PF00970 Oxidoreductase FAD-binding domain NAL94_11535 PF00111 2Fe-2S iron-sulfur cluster binding domain NAL94_11535 PF00175 Oxidoreductase NAD-binding domain NAL94_11540 PF02424 ApbE family NAL94_11550 PF00072 Response regulator receiver domain NAL94_11550 PF00990 Diguanylate cyclase, GGDEF domain NAL94_11560 PF00817 impB/mucB/samB family NAL94_11560 PF11799 impB/mucB/samB family C-terminal domain NAL94_11560 PF11798 IMS family HHH motif NAL94_11565 PF09382 RQC domain NAL94_11565 PF16124 RecQ zinc-binding NAL94_11565 PF00570 HRDC domain NAL94_11565 PF00270 DEAD/DEAH box helicase NAL94_11565 PF00271 Helicase conserved C-terminal domain NAL94_11570 PF01272 Transcription elongation factor, GreA/GreB, C-term NAL94_11570 PF03449 Transcription elongation factor, N-terminal NAL94_11580 PF06483 Chitinase C NAL94_11580 PF00704 Glycosyl hydrolases family 18 NAL94_11585 PF00209 Sodium:neurotransmitter symporter family NAL94_11595 PF06786 Uncharacterised protein family (UPF0253) NAL94_11605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NAL94_11605 PF04073 Aminoacyl-tRNA editing domain NAL94_11605 PF03129 Anticodon binding domain NAL94_11610 PF01980 tRNA-methyltransferase O NAL94_11610 PF18389 TrmO C-terminal domain NAL94_11615 PF01197 Ribosomal protein L31 NAL94_11620 PF00444 Ribosomal protein L36 NAL94_11625 PF03806 AbgT putative transporter family NAL94_11650 PF01370 NAD dependent epimerase/dehydratase family NAL94_11655 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NAL94_11655 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NAL94_11660 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 NAL94_11685 PF04287 tRNA pseudouridine synthase C NAL94_11685 PF00849 RNA pseudouridylate synthase NAL94_11690 PF00849 RNA pseudouridylate synthase NAL94_11695 PF11944 Protein of unknown function (DUF3461) NAL94_11700 PF01842 ACT domain NAL94_11700 PF01966 HD domain NAL94_11700 PF08335 GlnD PII-uridylyltransferase NAL94_11700 PF01909 Nucleotidyltransferase domain NAL94_11705 PF00557 Metallopeptidase family M24 NAL94_11710 PF00318 Ribosomal protein S2 NAL94_11715 PF00889 Elongation factor TS NAL94_11720 PF00696 Amino acid kinase family NAL94_11725 PF01765 Ribosome recycling factor NAL94_11730 PF01255 Putative undecaprenyl diphosphate synthase NAL94_11740 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain NAL94_11740 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase NAL94_11740 PF13288 DXP reductoisomerase C-terminal domain NAL94_11745 PF17820 PDZ domain NAL94_11745 PF02163 Peptidase family M50 NAL94_11750 PF01103 Surface antigen NAL94_11750 PF07244 Surface antigen variable number repeat NAL94_11755 PF03938 Outer membrane protein (OmpH-like) NAL94_11760 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD NAL94_11760 PF00132 Bacterial transferase hexapeptide (six repeats) NAL94_11765 PF07977 FabA-like domain NAL94_11770 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 NAL94_11770 PF00132 Bacterial transferase hexapeptide (six repeats) NAL94_11775 PF02684 Lipid-A-disaccharide synthetase NAL94_11780 PF01351 Ribonuclease HII NAL94_11785 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NAL94_11785 PF01336 OB-fold nucleic acid binding domain NAL94_11785 PF02811 PHP domain NAL94_11785 PF14579 Helix-hairpin-helix motif NAL94_11785 PF07733 Bacterial DNA polymerase III alpha NTPase domain NAL94_11790 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit NAL94_11795 PF11734 TilS substrate C-terminal domain NAL94_11795 PF09179 TilS substrate binding domain NAL94_11795 PF01171 PP-loop family NAL94_11800 PF00034 Cytochrome c NAL94_11805 PF00543 Nitrogen regulatory protein P-II NAL94_11810 PF03372 Endonuclease/Exonuclease/phosphatase family NAL94_11820 PF01476 LysM domain NAL94_11820 PF01464 Transglycosylase SLT domain NAL94_11825 PF16123 Hydroxyacylglutathione hydrolase C-terminus NAL94_11825 PF00753 Metallo-beta-lactamase superfamily NAL94_11830 PF08241 Methyltransferase domain NAL94_11835 PF00075 RNase H NAL94_11840 PF00929 Exonuclease NAL94_11865 PF00916 Sulfate permease family NAL94_11865 PF01740 STAS domain NAL94_11870 PF09317 Domain of unknown function (DUF1974) NAL94_11870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NAL94_11870 PF02770 Acyl-CoA dehydrogenase, middle domain NAL94_11870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NAL94_11875 PF13580 SIS domain NAL94_11880 PF13230 Glutamine amidotransferases class-II NAL94_11885 PF00551 Formyl transferase NAL94_11890 PF02769 AIR synthase related protein, C-terminal domain NAL94_11890 PF00586 AIR synthase related protein, N-terminal domain NAL94_11900 PF00860 Permease family NAL94_11915 PF03358 NADPH-dependent FMN reductase NAL94_11920 PF03960 ArsC family NAL94_11925 PF13181 Tetratricopeptide repeat NAL94_11925 PF01435 Peptidase family M48 NAL94_11935 PF01594 AI-2E family transporter NAL94_11940 PF00578 AhpC/TSA family NAL94_11950 PF00701 Dihydrodipicolinate synthetase family NAL94_11955 PF06804 NlpB/DapX lipoprotein NAL94_11970 PF07687 Peptidase dimerisation domain NAL94_11970 PF01546 Peptidase family M20/M25/M40 NAL94_11975 PF03960 ArsC family NAL94_11995 PF11143 Protein of unknown function (DUF2919) NAL94_12000 PF04261 Dyp-type peroxidase family NAL94_12005 PF00669 Bacterial flagellin N-terminal helical region NAL94_12005 PF07196 Flagellin hook IN motif NAL94_12005 PF00700 Bacterial flagellin C-terminal helical region NAL94_12010 PF00669 Bacterial flagellin N-terminal helical region NAL94_12010 PF07196 Flagellin hook IN motif NAL94_12010 PF00700 Bacterial flagellin C-terminal helical region NAL94_12015 PF07196 Flagellin hook IN motif NAL94_12015 PF00669 Bacterial flagellin N-terminal helical region NAL94_12015 PF00700 Bacterial flagellin C-terminal helical region NAL94_12020 PF03646 FlaG protein NAL94_12025 PF02465 Flagellar hook-associated protein 2 N-terminus NAL94_12025 PF07196 Flagellin hook IN motif NAL94_12025 PF07195 Flagellar hook-associated protein 2 C-terminus NAL94_12035 PF02561 Flagellar protein FliS NAL94_12040 PF00158 Sigma-54 interaction domain NAL94_12040 PF06490 Flagellar regulatory protein FleQ NAL94_12040 PF02954 Bacterial regulatory protein, Fis family NAL94_12045 PF00512 His Kinase A (phospho-acceptor) domain NAL94_12045 PF13188 PAS domain NAL94_12045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_12050 PF00158 Sigma-54 interaction domain NAL94_12050 PF00072 Response regulator receiver domain NAL94_12050 PF02954 Bacterial regulatory protein, Fis family NAL94_12055 PF02049 Flagellar hook-basal body complex protein FliE NAL94_12060 PF08345 Flagellar M-ring protein C-terminal NAL94_12060 PF01514 Secretory protein of YscJ/FliF family NAL94_12065 PF01706 FliG C-terminal domain NAL94_12065 PF14841 FliG middle domain NAL94_12065 PF14842 FliG N-terminal domain NAL94_12075 PF18269 T3SS EscN ATPase C-terminal domain NAL94_12075 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NAL94_12105 PF02154 Flagellar motor switch protein FliM NAL94_12105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NAL94_12110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NAL94_12115 PF04347 Flagellar biosynthesis protein, FliO NAL94_12120 PF00813 FliP family NAL94_12125 PF01313 Bacterial export proteins, family 3 NAL94_12130 PF01311 Bacterial export proteins, family 1 NAL94_12135 PF01312 FlhB HrpN YscU SpaS Family NAL94_12140 PF00771 FHIPEP family NAL94_12145 PF00448 SRP54-type protein, GTPase domain NAL94_12150 PF10609 NUBPL iron-transfer P-loop NTPase NAL94_12155 PF04542 Sigma-70 region 2 NAL94_12155 PF04539 Sigma-70 region 3 NAL94_12155 PF04545 Sigma-70, region 4 NAL94_12160 PF00072 Response regulator receiver domain NAL94_12165 PF04344 Chemotaxis phosphatase, CheZ NAL94_12170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_12170 PF01627 Hpt domain NAL94_12170 PF00072 Response regulator receiver domain NAL94_12170 PF01584 CheW-like domain NAL94_12170 PF02895 Signal transducing histidine kinase, homodimeric domain NAL94_12175 PF01339 CheB methylesterase NAL94_12175 PF00072 Response regulator receiver domain NAL94_12180 PF13614 AAA domain NAL94_12190 PF01584 CheW-like domain NAL94_12200 PF00005 ABC transporter NAL94_12205 PF03379 CcmB protein NAL94_12210 PF01578 Cytochrome C assembly protein NAL94_12215 PF04995 Heme exporter protein D (CcmD) NAL94_12220 PF03100 CcmE NAL94_12225 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NAL94_12225 PF01578 Cytochrome C assembly protein NAL94_12230 PF08534 Redoxin NAL94_12235 PF03918 Cytochrome C biogenesis protein NAL94_12240 PF03918 Cytochrome C biogenesis protein NAL94_12245 PF04333 MlaA lipoprotein NAL94_12250 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NAL94_12255 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) NAL94_12265 PF04542 Sigma-70 region 2 NAL94_12265 PF08281 Sigma-70, region 4 NAL94_12270 PF02803 Thiolase, C-terminal domain NAL94_12270 PF00108 Thiolase, N-terminal domain NAL94_12275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAL94_12275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAL94_12275 PF00378 Enoyl-CoA hydratase/isomerase NAL94_12285 PF05193 Peptidase M16 inactive domain NAL94_12285 PF00675 Insulinase (Peptidase family M16) NAL94_12285 PF16187 Middle or third domain of peptidase_M16 NAL94_12290 PF00300 Histidine phosphatase superfamily (branch 1) NAL94_12295 PF01713 Smr domain NAL94_12300 PF05175 Methyltransferase small domain NAL94_12305 PF01264 Chorismate synthase NAL94_12310 PF03458 UPF0126 domain NAL94_12315 PF04315 Elongation factor P hydroxylase NAL94_12320 PF08891 YfcL protein NAL94_12325 PF03358 NADPH-dependent FMN reductase NAL94_12330 PF01266 FAD dependent oxidoreductase NAL94_12330 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NAL94_12335 PF00109 Beta-ketoacyl synthase, N-terminal domain NAL94_12335 PF02801 Beta-ketoacyl synthase, C-terminal domain NAL94_12340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAL94_12340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAL94_12340 PF11890 Domain of unknown function (DUF3410) NAL94_12345 PF02774 Semialdehyde dehydrogenase, dimerisation domain NAL94_12345 PF01118 Semialdehyde dehydrogenase, NAD binding domain NAL94_12355 PF01416 tRNA pseudouridine synthase NAL94_12360 PF01039 Carboxyl transferase domain NAL94_12360 PF17848 Acetyl-coA carboxylase zinc finger domain NAL94_12365 PF02875 Mur ligase family, glutamate ligase domain NAL94_12365 PF08245 Mur ligase middle domain NAL94_12370 PF05036 Sporulation related domain NAL94_12375 PF02674 Colicin V production protein NAL94_12380 PF00156 Phosphoribosyl transferase domain NAL94_12385 PF03466 LysR substrate binding domain NAL94_12385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_12390 PF00072 Response regulator receiver domain NAL94_12395 PF04304 Protein of unknown function (DUF454) NAL94_12400 PF00156 Phosphoribosyl transferase domain NAL94_12405 PF12169 DNA polymerase III subunits gamma and tau domain III NAL94_12405 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding NAL94_12405 PF12170 DNA polymerase III tau subunit V interacting with alpha NAL94_12410 PF02575 YbaB/EbfC DNA-binding family NAL94_12415 PF02132 RecR protein NAL94_12415 PF13662 Toprim domain NAL94_12420 PF00230 Major intrinsic protein NAL94_12425 PF03692 Putative zinc- or iron-chelating domain NAL94_12430 PF04226 Transglycosylase associated protein NAL94_12435 PF03692 Putative zinc- or iron-chelating domain NAL94_12440 PF00924 Mechanosensitive ion channel NAL94_12440 PF05552 Conserved TM helix NAL94_12445 PF03992 Antibiotic biosynthesis monooxygenase NAL94_12450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NAL94_12460 PF00245 Alkaline phosphatase NAL94_12475 PF13847 Methyltransferase domain NAL94_12480 PF02743 Cache domain NAL94_12480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_12480 PF00672 HAMP domain NAL94_12485 PF01263 Aldose 1-epimerase NAL94_12490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAL94_12490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAL94_12495 PF01641 SelR domain NAL94_12505 PF07023 Protein of unknown function (DUF1315) NAL94_12510 PF00710 Asparaginase, N-terminal NAL94_12510 PF17763 Glutaminase/Asparaginase C-terminal domain NAL94_12515 PF01343 Peptidase family S49 NAL94_12520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NAL94_12520 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_12530 PF00881 Nitroreductase family NAL94_12535 PF01131 DNA topoisomerase NAL94_12535 PF01751 Toprim domain NAL94_12545 PF00106 short chain dehydrogenase NAL94_12550 PF00850 Histone deacetylase domain NAL94_12560 PF11893 Domain of unknown function (DUF3413) NAL94_12560 PF00884 Sulfatase NAL94_12565 PF07208 Protein of unknown function (DUF1414) NAL94_12570 PF04245 37-kD nucleoid-associated bacterial protein NAL94_12585 PF03553 Na+/H+ antiporter family NAL94_12590 PF01118 Semialdehyde dehydrogenase, NAD binding domain NAL94_12590 PF02774 Semialdehyde dehydrogenase, dimerisation domain NAL94_12595 PF00027 Cyclic nucleotide-binding domain NAL94_12595 PF00520 Ion transport protein NAL94_12600 PF01914 MarC family integral membrane protein NAL94_12605 PF00171 Aldehyde dehydrogenase family NAL94_12605 PF00465 Iron-containing alcohol dehydrogenase NAL94_12620 PF02777 Iron/manganese superoxide dismutases, C-terminal domain NAL94_12620 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain NAL94_12625 PF00462 Glutaredoxin NAL94_12635 PF02899 Phage integrase, N-terminal SAM-like domain NAL94_12635 PF00589 Phage integrase family NAL94_12640 PF00145 C-5 cytosine-specific DNA methylase NAL94_12655 PF01844 HNH endonuclease NAL94_12670 PF06892 Phage regulatory protein CII (CP76) NAL94_12865 PF13726 Na+-H+ antiporter family NAL94_12865 PF03553 Na+/H+ antiporter family NAL94_12870 PF00929 Exonuclease NAL94_12875 PF18393 MotY N-terminal domain NAL94_12875 PF00691 OmpA family NAL94_12880 PF10952 Protein of unknown function (DUF2753) NAL94_12885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NAL94_12890 PF00633 Helix-hairpin-helix motif NAL94_12890 PF00730 HhH-GPD superfamily base excision DNA repair protein NAL94_12890 PF10576 Iron-sulfur binding domain of endonuclease III NAL94_12895 PF02508 Rnf-Nqr subunit, membrane protein NAL94_12900 PF04205 FMN-binding domain NAL94_12905 PF03116 NQR2, RnfD, RnfE family NAL94_12910 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit NAL94_12910 PF12838 4Fe-4S dicluster domain NAL94_12910 PF13375 RnfC Barrel sandwich hybrid domain NAL94_12910 PF10531 SLBB domain NAL94_12915 PF04060 Putative Fe-S cluster NAL94_12920 PF02508 Rnf-Nqr subunit, membrane protein NAL94_12925 PF01228 Glycine radical NAL94_12925 PF02901 Pyruvate formate lyase-like NAL94_12935 PF02151 UvrB/uvrC motif NAL94_12935 PF00271 Helicase conserved C-terminal domain NAL94_12935 PF04851 Type III restriction enzyme, res subunit NAL94_12935 PF12344 Ultra-violet resistance protein B NAL94_12935 PF17757 UvrB interaction domain NAL94_12940 PF02954 Bacterial regulatory protein, Fis family NAL94_12940 PF00072 Response regulator receiver domain NAL94_12940 PF00158 Sigma-54 interaction domain NAL94_12945 PF01627 Hpt domain NAL94_12950 PF01933 Uncharacterised protein family UPF0052 NAL94_12955 PF06463 Molybdenum Cofactor Synthesis C NAL94_12955 PF04055 Radical SAM superfamily NAL94_12960 PF00994 Probable molybdopterin binding domain NAL94_12965 PF01967 MoaC family NAL94_12970 PF02597 ThiS family NAL94_12975 PF02391 MoaE protein NAL94_12980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_12985 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_12990 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_12990 PF12911 N-terminal TM domain of oligopeptide transport permease C NAL94_12995 PF00005 ABC transporter NAL94_12995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_13000 PF00005 ABC transporter NAL94_13000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_13005 PF13409 Glutathione S-transferase, N-terminal domain NAL94_13015 PF07085 DRTGG domain NAL94_13015 PF01515 Phosphate acetyl/butaryl transferase NAL94_13020 PF00871 Acetokinase family NAL94_13025 PF04217 Protein of unknown function, DUF412 NAL94_13035 PF02653 Branched-chain amino acid transport system / permease component NAL94_13040 PF00005 ABC transporter NAL94_13045 PF00128 Alpha amylase, catalytic domain NAL94_13045 PF02903 Alpha amylase, N-terminal ig-like domain NAL94_13050 PF17158 Membrane-associated sensor, integral membrane domain NAL94_13050 PF00990 Diguanylate cyclase, GGDEF domain NAL94_13055 PF01207 Dihydrouridine synthase (Dus) NAL94_13060 PF02810 SEC-C motif NAL94_13060 PF03695 Uncharacterised protein family (UPF0149) NAL94_13065 PF02600 Disulfide bond formation protein DsbB NAL94_13070 PF06450 Bacterial Na+/H+ antiporter B (NhaB) NAL94_13075 PF00392 Bacterial regulatory proteins, gntR family NAL94_13075 PF07840 FadR C-terminal domain NAL94_13085 PF01588 Putative tRNA binding domain NAL94_13085 PF09334 tRNA synthetases class I (M) NAL94_13090 PF10609 NUBPL iron-transfer P-loop NTPase NAL94_13095 PF00485 Phosphoribulokinase / Uridine kinase family NAL94_13105 PF12557 Cob(I)alamin adenosyltransferase N terminal NAL94_13105 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP NAL94_13110 PF01451 Low molecular weight phosphotyrosine protein phosphatase NAL94_13115 PF01740 STAS domain NAL94_13115 PF00916 Sulfate permease family NAL94_13120 PF00575 S1 RNA binding domain NAL94_13120 PF10150 Ribonuclease E/G family NAL94_13120 PF12111 Polyribonucleotide phosphorylase C terminal NAL94_13125 PF00849 RNA pseudouridylate synthase NAL94_13125 PF01479 S4 domain NAL94_13130 PF02545 Maf-like protein NAL94_13135 PF02620 Large ribosomal RNA subunit accumulation protein YceD NAL94_13140 PF01783 Ribosomal L32p protein family NAL94_13145 PF02504 Fatty acid synthesis protein NAL94_13150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III NAL94_13150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal NAL94_13155 PF00698 Acyl transferase domain NAL94_13165 PF00550 Phosphopantetheine attachment site NAL94_13170 PF02801 Beta-ketoacyl synthase, C-terminal domain NAL94_13170 PF00109 Beta-ketoacyl synthase, N-terminal domain NAL94_13175 PF01063 Amino-transferase class IV NAL94_13180 PF02618 YceG-like family NAL94_13185 PF02223 Thymidylate kinase NAL94_13190 PF09115 DNA polymerase III, delta subunit, C terminal NAL94_13195 PF01026 TatD related DNase NAL94_13200 PF00367 phosphotransferase system, EIIB NAL94_13200 PF02378 Phosphotransferase system, EIIC NAL94_13215 PF00209 Sodium:neurotransmitter symporter family NAL94_13230 PF01734 Patatin-like phospholipase NAL94_13235 PF00224 Pyruvate kinase, barrel domain NAL94_13235 PF02887 Pyruvate kinase, alpha/beta domain NAL94_13240 PF00480 ROK family NAL94_13245 PF01584 CheW-like domain NAL94_13245 PF00072 Response regulator receiver domain NAL94_13250 PF14579 Helix-hairpin-helix motif NAL94_13250 PF02811 PHP domain NAL94_13250 PF01336 OB-fold nucleic acid binding domain NAL94_13250 PF07733 Bacterial DNA polymerase III alpha NTPase domain NAL94_13250 PF17657 Bacterial DNA polymerase III alpha subunit finger domain NAL94_13265 PF00106 short chain dehydrogenase NAL94_13270 PF01343 Peptidase family S49 NAL94_13270 PF08496 Peptidase family S49 N-terminal NAL94_13275 PF02224 Cytidylate kinase NAL94_13280 PF00575 S1 RNA binding domain NAL94_13285 PF00216 Bacterial DNA-binding protein NAL94_13290 PF06305 Lipopolysaccharide assembly protein A domain NAL94_13295 PF18073 Rubredoxin metal binding domain NAL94_13300 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family NAL94_13305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_13325 PF02470 MlaD protein NAL94_13330 PF04403 Paraquat-inducible protein A NAL94_13335 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NAL94_13340 PF00034 Cytochrome c NAL94_13345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NAL94_13345 PF01568 Molydopterin dinucleotide binding domain NAL94_13345 PF00384 Molybdopterin oxidoreductase NAL94_13350 PF03916 Polysulphide reductase, NrfD NAL94_13355 PF13247 4Fe-4S dicluster domain NAL94_13360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_13360 PF00512 His Kinase A (phospho-acceptor) domain NAL94_13365 PF00072 Response regulator receiver domain NAL94_13365 PF00196 Bacterial regulatory proteins, luxR family NAL94_13375 PF11412 Disulphide bond corrector protein DsbC NAL94_13375 PF02683 Cytochrome C biogenesis protein transmembrane region NAL94_13380 PF00085 Thioredoxin NAL94_13390 PF05958 tRNA (Uracil-5-)-methyltransferase NAL94_13405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_13415 PF00005 ABC transporter NAL94_13415 PF02687 FtsX-like permease family NAL94_13415 PF12704 MacB-like periplasmic core domain NAL94_13420 PF00005 ABC transporter NAL94_13420 PF02687 FtsX-like permease family NAL94_13420 PF12704 MacB-like periplasmic core domain NAL94_13425 PF00005 ABC transporter NAL94_13425 PF12704 MacB-like periplasmic core domain NAL94_13425 PF02687 FtsX-like permease family NAL94_13445 PF01717 Cobalamin-independent synthase, Catalytic domain NAL94_13445 PF08267 Cobalamin-independent synthase, N-terminal domain NAL94_13455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_13455 PF00529 HlyD membrane-fusion protein of T1SS NAL94_13460 PF03466 LysR substrate binding domain NAL94_13460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_13475 PF00672 HAMP domain NAL94_13475 PF00512 His Kinase A (phospho-acceptor) domain NAL94_13475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_13480 PF00486 Transcriptional regulatory protein, C terminal NAL94_13480 PF00072 Response regulator receiver domain NAL94_13485 PF00535 Glycosyl transferase family 2 NAL94_13490 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase NAL94_13510 PF08497 Radical SAM N-terminal NAL94_13510 PF11842 Domain of unknown function (DUF3362) NAL94_13510 PF04055 Radical SAM superfamily NAL94_13515 PF08448 PAS fold NAL94_13515 PF08447 PAS fold NAL94_13515 PF00990 Diguanylate cyclase, GGDEF domain NAL94_13515 PF00563 EAL domain NAL94_13530 PF03466 LysR substrate binding domain NAL94_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_13535 PF08267 Cobalamin-independent synthase, N-terminal domain NAL94_13535 PF01717 Cobalamin-independent synthase, Catalytic domain NAL94_13545 PF03795 YCII-related domain NAL94_13550 PF03061 Thioesterase superfamily NAL94_13555 PF04279 Intracellular septation protein A NAL94_13565 PF00072 Response regulator receiver domain NAL94_13565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_13570 PF17327 Acyl homoserine lactone synthase NAL94_13575 PF00375 Sodium:dicarboxylate symporter family NAL94_13580 PF00501 AMP-binding enzyme NAL94_13580 PF13193 AMP-binding enzyme C-terminal domain NAL94_13585 PF13545 Crp-like helix-turn-helix domain NAL94_13585 PF00027 Cyclic nucleotide-binding domain NAL94_13590 PF00290 Tryptophan synthase alpha chain NAL94_13595 PF00291 Pyridoxal-phosphate dependent enzyme NAL94_13600 PF00218 Indole-3-glycerol phosphate synthase NAL94_13600 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NAL94_13605 PF00591 Glycosyl transferase family, a/b domain NAL94_13605 PF02885 Glycosyl transferase family, helical bundle domain NAL94_13610 PF00117 Glutamine amidotransferase class-I NAL94_13615 PF00425 chorismate binding enzyme NAL94_13615 PF04715 Anthranilate synthase component I, N terminal region NAL94_13620 PF08056 Tryptophan operon leader peptide NAL94_13625 PF02811 PHP domain NAL94_13630 PF01300 Telomere recombination NAL94_13640 PF00849 RNA pseudouridylate synthase NAL94_13640 PF01479 S4 domain NAL94_13645 PF04269 Protein of unknown function, DUF440 NAL94_13650 PF09285 Elongation factor P, C-terminal NAL94_13650 PF08207 Elongation factor P (EF-P) KOW-like domain NAL94_13650 PF01132 Elongation factor P (EF-P) OB domain NAL94_13660 PF00136 DNA polymerase family B NAL94_13660 PF03104 DNA polymerase family B, exonuclease domain NAL94_13665 PF00196 Bacterial regulatory proteins, luxR family NAL94_13665 PF00072 Response regulator receiver domain NAL94_13670 PF08459 UvrC Helix-hairpin-helix N-terminal NAL94_13670 PF02151 UvrB/uvrC motif NAL94_13670 PF01541 GIY-YIG catalytic domain NAL94_13675 PF01066 CDP-alcohol phosphatidyltransferase NAL94_13700 PF00202 Aminotransferase class-III NAL94_13705 PF03435 Saccharopine dehydrogenase NADP binding domain NAL94_13705 PF16653 Saccharopine dehydrogenase C-terminal domain NAL94_13710 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain NAL94_13725 PF00994 Probable molybdopterin binding domain NAL94_13735 PF00268 Ribonucleotide reductase, small chain NAL94_13740 PF03477 ATP cone domain NAL94_13740 PF02867 Ribonucleotide reductase, barrel domain NAL94_13740 PF00317 Ribonucleotide reductase, all-alpha domain NAL94_13750 PF00521 DNA gyrase/topoisomerase IV, subunit A NAL94_13750 PF03989 DNA gyrase C-terminal domain, beta-propeller NAL94_13765 PF02335 Cytochrome c552 NAL94_13775 PF13247 4Fe-4S dicluster domain NAL94_13780 PF03916 Polysulphide reductase, NrfD NAL94_13785 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal NAL94_13785 PF01578 Cytochrome C assembly protein NAL94_13790 PF08534 Redoxin NAL94_13795 PF03918 Cytochrome C biogenesis protein NAL94_13805 PF00925 GTP cyclohydrolase II NAL94_13830 PF01471 Putative peptidoglycan binding domain NAL94_13830 PF03734 L,D-transpeptidase catalytic domain NAL94_13835 PF05951 Bacterial protein of unknown function (DUF882) NAL94_13840 PF00753 Metallo-beta-lactamase superfamily NAL94_13855 PF03480 Bacterial extracellular solute-binding protein, family 7 NAL94_13865 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NAL94_13870 PF07730 Histidine kinase NAL94_13870 PF17200 Single Cache domain 2 NAL94_13875 PF00072 Response regulator receiver domain NAL94_13875 PF00196 Bacterial regulatory proteins, luxR family NAL94_13885 PF02028 BCCT, betaine/carnitine/choline family transporter NAL94_13890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_13890 PF00672 HAMP domain NAL94_13910 PF00155 Aminotransferase class I and II NAL94_13925 PF00392 Bacterial regulatory proteins, gntR family NAL94_13925 PF00155 Aminotransferase class I and II NAL94_13935 PF00152 tRNA synthetases class II (D, K and N) NAL94_13935 PF01336 OB-fold nucleic acid binding domain NAL94_13940 PF00672 HAMP domain NAL94_13940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_13940 PF17200 Single Cache domain 2 NAL94_13945 PF01242 6-pyruvoyl tetrahydropterin synthase NAL94_13955 PF04940 Sensors of blue-light using FAD NAL94_13955 PF00563 EAL domain NAL94_13960 PF03315 Serine dehydratase beta chain NAL94_13960 PF03313 Serine dehydratase alpha chain NAL94_13965 PF03222 Tryptophan/tyrosine permease family NAL94_13970 PF00293 NUDIX domain NAL94_13980 PF00072 Response regulator receiver domain NAL94_13980 PF09308 LuxQ, periplasmic NAL94_13980 PF00512 His Kinase A (phospho-acceptor) domain NAL94_13980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_13985 PF00425 chorismate binding enzyme NAL94_13985 PF04715 Anthranilate synthase component I, N terminal region NAL94_14000 PF04317 YcjX-like family, DUF463 NAL94_14005 PF05128 Domain of unknown function (DUF697) NAL94_14010 PF00158 Sigma-54 interaction domain NAL94_14010 PF18024 Helix-turn-helix domain NAL94_14015 PF13302 Acetyltransferase (GNAT) domain NAL94_14030 PF13495 Phage integrase, N-terminal SAM-like domain NAL94_14030 PF00589 Phage integrase family NAL94_14280 PF08378 Nuclease-related domain NAL94_14440 PF13649 Methyltransferase domain NAL94_14995 PF05016 ParE toxin of type II toxin-antitoxin system, parDE NAL94_15065 PF14602 Hexapeptide repeat of succinyl-transferase NAL94_15065 PF12464 Maltose acetyltransferase NAL94_15070 PF13302 Acetyltransferase (GNAT) domain NAL94_15075 PF02272 DHHA1 domain NAL94_15075 PF01411 tRNA synthetases class II (A) NAL94_15075 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NAL94_15095 PF07237 Protein of unknown function (DUF1428) NAL94_15100 PF01810 LysE type translocator NAL94_15105 PF01810 LysE type translocator NAL94_15110 PF11008 Protein of unknown function (DUF2846) NAL94_15115 PF17243 POTRA domain TamA domain 1 NAL94_15115 PF01103 Surface antigen NAL94_15120 PF13091 PLD-like domain NAL94_15125 PF00135 Carboxylesterase family NAL94_15140 PF13533 Biotin-lipoyl like NAL94_15150 PF06826 Predicted Permease Membrane Region NAL94_15150 PF02080 TrkA-C domain NAL94_15155 PF00155 Aminotransferase class I and II NAL94_15160 PF08543 Phosphomethylpyrimidine kinase NAL94_15175 PF03466 LysR substrate binding domain NAL94_15175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_15190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_15205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_15205 PF00989 PAS fold NAL94_15205 PF17203 Single cache domain 3 NAL94_15205 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain NAL94_15210 PF00072 Response regulator receiver domain NAL94_15210 PF12431 Transcriptional regulator NAL94_15215 PF00593 TonB dependent receptor NAL94_15215 PF07715 TonB-dependent Receptor Plug Domain NAL94_15220 PF02311 AraC-like ligand binding domain NAL94_15220 PF12833 Helix-turn-helix domain NAL94_15225 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain NAL94_15225 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain NAL94_15230 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase NAL94_15235 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain NAL94_15235 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase NAL94_15250 PF01590 GAF domain NAL94_15250 PF02954 Bacterial regulatory protein, Fis family NAL94_15250 PF00158 Sigma-54 interaction domain NAL94_15255 PF00171 Aldehyde dehydrogenase family NAL94_15275 PF12833 Helix-turn-helix domain NAL94_15290 PF03958 Bacterial type II/III secretion system short domain NAL94_15290 PF00263 Bacterial type II and III secretion system protein NAL94_15295 PF16697 Inner membrane component of T3SS, cytoplasmic domain NAL94_15295 PF16693 Inner membrane component of T3SS, periplasmic domain NAL94_15305 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF NAL94_15310 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) NAL94_15320 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI NAL94_15325 PF01514 Secretory protein of YscJ/FliF family NAL94_15335 PF02108 Flagellar assembly protein FliH NAL94_15345 PF02661 Fic/DOC family NAL94_15375 PF12852 Cupin NAL94_15375 PF12833 Helix-turn-helix domain NAL94_15380 PF01312 FlhB HrpN YscU SpaS Family NAL94_15385 PF01311 Bacterial export proteins, family 1 NAL94_15390 PF01313 Bacterial export proteins, family 3 NAL94_15395 PF00813 FliP family NAL94_15400 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term NAL94_15415 PF18269 T3SS EscN ATPase C-terminal domain NAL94_15415 PF02874 ATP synthase alpha/beta family, beta-barrel domain NAL94_15415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NAL94_15425 PF09059 TyeA NAL94_15445 PF00771 FHIPEP family NAL94_15450 PF09621 Type III secretion system regulator (LcrR) NAL94_15460 PF04792 V antigen (LcrV) protein NAL94_15465 PF07720 Tetratricopeptide repeat NAL94_15475 PF05844 YopD protein NAL94_15480 PF16868 NMT1-like family NAL94_15485 PF01925 Sulfite exporter TauE/SafE NAL94_15495 PF01970 Tripartite tricarboxylate transporter TctA family NAL94_15525 PF00285 Citrate synthase, C-terminal domain NAL94_15530 PF00330 Aconitase family (aconitate hydratase) NAL94_15530 PF00694 Aconitase C-terminal domain NAL94_15535 PF04303 PrpF protein NAL94_15540 PF13193 AMP-binding enzyme C-terminal domain NAL94_15540 PF00501 AMP-binding enzyme NAL94_15540 PF16177 Acetyl-coenzyme A synthetase N-terminus NAL94_15550 PF00089 Trypsin NAL94_15565 PF04055 Radical SAM superfamily NAL94_15570 PF06508 Queuosine biosynthesis protein QueC NAL94_15580 PF01810 LysE type translocator NAL94_15585 PF03466 LysR substrate binding domain NAL94_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_15590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_15590 PF03466 LysR substrate binding domain NAL94_15595 PF00873 AcrB/AcrD/AcrF family NAL94_15605 PF03466 LysR substrate binding domain NAL94_15605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_15610 PF00267 Gram-negative porin NAL94_15620 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_15625 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_15630 PF00005 ABC transporter NAL94_15635 PF02574 Homocysteine S-methyltransferase NAL94_15635 PF02965 Vitamin B12 dependent methionine synthase, activation domain NAL94_15635 PF02607 B12 binding domain NAL94_15635 PF02310 B12 binding domain NAL94_15635 PF00809 Pterin binding enzyme NAL94_15640 PF00107 Zinc-binding dehydrogenase NAL94_15640 PF08240 Alcohol dehydrogenase GroES-like domain NAL94_15650 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_15655 PF00857 Isochorismatase family NAL94_15660 PF02311 AraC-like ligand binding domain NAL94_15660 PF12833 Helix-turn-helix domain NAL94_15665 PF08240 Alcohol dehydrogenase GroES-like domain NAL94_15665 PF00107 Zinc-binding dehydrogenase NAL94_15675 PF07690 Major Facilitator Superfamily NAL94_15680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_15680 PF03466 LysR substrate binding domain NAL94_15690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_15690 PF03466 LysR substrate binding domain NAL94_15695 PF00248 Aldo/keto reductase family NAL94_15705 PF01614 Bacterial transcriptional regulator NAL94_15705 PF09339 IclR helix-turn-helix domain NAL94_15710 PF00990 Diguanylate cyclase, GGDEF domain NAL94_15720 PF00691 OmpA family NAL94_15720 PF05736 OprF membrane domain NAL94_15735 PF00691 OmpA family NAL94_15750 PF17785 PUA-like domain NAL94_15750 PF10672 S-adenosylmethionine-dependent methyltransferase NAL94_15755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_15755 PF00672 HAMP domain NAL94_15755 PF02743 Cache domain NAL94_15760 PF00708 Acylphosphatase NAL94_15765 PF04358 DsrC like protein NAL94_15775 PF01027 Inhibitor of apoptosis-promoting Bax1 NAL94_15780 PF00005 ABC transporter NAL94_15785 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_15790 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_15795 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_15800 PF10414 Sirohaem synthase dimerisation region NAL94_15800 PF14824 Sirohaem biosynthesis protein central NAL94_15800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NAL94_15805 PF04461 Protein of unknown function (DUF520) NAL94_15810 PF00793 DAHP synthetase I family NAL94_15830 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF NAL94_15830 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF NAL94_15830 PF01189 16S rRNA methyltransferase RsmB/F NAL94_15835 PF02470 MlaD protein NAL94_15840 PF04403 Paraquat-inducible protein A NAL94_15845 PF00664 ABC transporter transmembrane region NAL94_15845 PF00005 ABC transporter NAL94_15850 PF13185 GAF domain NAL94_15855 PF04352 ProQ/FINO family NAL94_15855 PF17516 ProQ C-terminal domain NAL94_15860 PF00595 PDZ domain NAL94_15860 PF11818 C-terminal domain of tail specific protease (DUF3340) NAL94_15860 PF03572 Peptidase family S41 NAL94_15860 PF17804 Tail specific protease N-terminal domain NAL94_15870 PF01433 Peptidase family M1 domain NAL94_15870 PF17432 Domain of unknown function (DUF3458_C) ARM repeats NAL94_15870 PF11940 Domain of unknown function (DUF3458) Ig-like fold NAL94_15880 PF05088 Bacterial NAD-glutamate dehydrogenase NAL94_15885 PF01180 Dihydroorotate dehydrogenase NAL94_15890 PF07126 Cell-division protein ZapC NAL94_15895 PF10672 S-adenosylmethionine-dependent methyltransferase NAL94_15895 PF01170 Putative RNA methylase family UPF0020 NAL94_15895 PF02926 THUMP domain NAL94_15905 PF12848 ABC transporter NAL94_15905 PF16326 ABC transporter C-terminal domain NAL94_15905 PF00005 ABC transporter NAL94_15915 PF04957 Ribosome modulation factor NAL94_15920 PF07977 FabA-like domain NAL94_15925 PF05362 Lon protease (S16) C-terminal proteolytic domain NAL94_15925 PF13654 AAA domain NAL94_15930 PF17414 MatP C-terminal ribbon-helix-helix domain NAL94_15930 PF06303 MatP N-terminal domain NAL94_15960 PF05840 Bacteriophage replication gene A protein (GPA) NAL94_16040 PF13614 AAA domain NAL94_16055 PF00512 His Kinase A (phospho-acceptor) domain NAL94_16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_16055 PF09308 LuxQ, periplasmic NAL94_16055 PF00072 Response regulator receiver domain NAL94_16070 PF00115 Cytochrome C and Quinol oxidase polypeptide I NAL94_16085 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NAL94_16085 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP NAL94_16095 PF00403 Heavy-metal-associated domain NAL94_16110 PF13545 Crp-like helix-turn-helix domain NAL94_16110 PF00027 Cyclic nucleotide-binding domain NAL94_16115 PF00582 Universal stress protein family NAL94_16120 PF01171 PP-loop family NAL94_16140 PF08402 TOBE domain NAL94_16140 PF00005 ABC transporter NAL94_16145 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_16150 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_16155 PF13416 Bacterial extracellular solute-binding protein NAL94_16160 PF13416 Bacterial extracellular solute-binding protein NAL94_16165 PF02146 Sir2 family NAL94_16175 PF00909 Ammonium Transporter Family NAL94_16185 PF03527 RHS protein NAL94_16185 PF05593 RHS Repeat NAL94_16200 PF13247 4Fe-4S dicluster domain NAL94_16205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain NAL94_16205 PF01568 Molydopterin dinucleotide binding domain NAL94_16205 PF00384 Molybdopterin oxidoreductase NAL94_16215 PF02613 Nitrate reductase delta subunit NAL94_16235 PF02634 FdhD/NarQ family NAL94_16240 PF00005 ABC transporter NAL94_16240 PF12848 ABC transporter NAL94_16245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_16245 PF00512 His Kinase A (phospho-acceptor) domain NAL94_16250 PF02954 Bacterial regulatory protein, Fis family NAL94_16250 PF00072 Response regulator receiver domain NAL94_16250 PF00158 Sigma-54 interaction domain NAL94_16255 PF12849 PBP superfamily domain NAL94_16260 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_16265 PF00005 ABC transporter NAL94_16265 PF08402 TOBE domain NAL94_16270 PF12804 MobA-like NTP transferase domain NAL94_16275 PF03453 MoeA N-terminal region (domain I and II) NAL94_16275 PF00994 Probable molybdopterin binding domain NAL94_16275 PF03454 MoeA C-terminal region (domain IV) NAL94_16285 PF00480 ROK family NAL94_16290 PF03942 DTW domain NAL94_16320 PF00877 NlpC/P60 family NAL94_16330 PF00990 Diguanylate cyclase, GGDEF domain NAL94_16330 PF05230 MASE2 domain NAL94_16335 PF01339 CheB methylesterase NAL94_16335 PF00072 Response regulator receiver domain NAL94_16340 PF03881 Fructosamine kinase NAL94_16350 PF00677 Lumazine binding domain NAL94_16355 PF01554 MatE NAL94_16365 PF14743 DNA ligase OB-like domain NAL94_16365 PF01068 ATP dependent DNA ligase domain NAL94_16370 PF01740 STAS domain NAL94_16380 PF02563 Polysaccharide biosynthesis/export protein NAL94_16380 PF10531 SLBB domain NAL94_16395 PF02954 Bacterial regulatory protein, Fis family NAL94_16395 PF00072 Response regulator receiver domain NAL94_16395 PF00158 Sigma-54 interaction domain NAL94_16400 PF13439 Glycosyltransferase Family 4 NAL94_16400 PF00534 Glycosyl transferases group 1 NAL94_16405 PF00534 Glycosyl transferases group 1 NAL94_16405 PF13439 Glycosyltransferase Family 4 NAL94_16435 PF13439 Glycosyltransferase Family 4 NAL94_16435 PF00534 Glycosyl transferases group 1 NAL94_16445 PF02397 Bacterial sugar transferase NAL94_16455 PF02028 BCCT, betaine/carnitine/choline family transporter NAL94_16470 PF00270 DEAD/DEAH box helicase NAL94_16470 PF11898 Domain of unknown function (DUF3418) NAL94_16470 PF04408 Helicase associated domain (HA2) NAL94_16470 PF00271 Helicase conserved C-terminal domain NAL94_16470 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NAL94_16475 PF02525 Flavodoxin-like fold NAL94_16510 PF00990 Diguanylate cyclase, GGDEF domain NAL94_16520 PF00012 Hsp70 protein NAL94_16525 PF00012 Hsp70 protein NAL94_16540 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NAL94_16540 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NAL94_16550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_16550 PF03466 LysR substrate binding domain NAL94_16560 PF07963 Prokaryotic N-terminal methylation motif NAL94_16560 PF08334 Type II secretion system (T2SS), protein G NAL94_16565 PF00005 ABC transporter NAL94_16565 PF00664 ABC transporter transmembrane region NAL94_16570 PF00664 ABC transporter transmembrane region NAL94_16570 PF00005 ABC transporter NAL94_16580 PF07715 TonB-dependent Receptor Plug Domain NAL94_16580 PF00593 TonB dependent receptor NAL94_16585 PF01032 FecCD transport family NAL94_16590 PF01497 Periplasmic binding protein NAL94_16595 PF00005 ABC transporter NAL94_16605 PF11871 Domain of unknown function (DUF3391) NAL94_16605 PF01966 HD domain NAL94_16610 PF03222 Tryptophan/tyrosine permease family NAL94_16615 PF00465 Iron-containing alcohol dehydrogenase NAL94_16620 PF01966 HD domain NAL94_16630 PF03741 Integral membrane protein TerC family NAL94_16640 PF04055 Radical SAM superfamily NAL94_16645 PF11230 Protein of unknown function (DUF3029) NAL94_16650 PF01810 LysE type translocator NAL94_16655 PF11871 Domain of unknown function (DUF3391) NAL94_16655 PF01966 HD domain NAL94_16660 PF03707 Bacterial signalling protein N terminal repeat NAL94_16660 PF00990 Diguanylate cyclase, GGDEF domain NAL94_16660 PF00563 EAL domain NAL94_16665 PF00072 Response regulator receiver domain NAL94_16665 PF00158 Sigma-54 interaction domain NAL94_16665 PF02954 Bacterial regulatory protein, Fis family NAL94_16670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_16670 PF00512 His Kinase A (phospho-acceptor) domain NAL94_16675 PF00939 Sodium:sulfate symporter transmembrane region NAL94_16695 PF00990 Diguanylate cyclase, GGDEF domain NAL94_16695 PF00072 Response regulator receiver domain NAL94_16700 PF03928 Haem-degrading NAL94_16705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold NAL94_16705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain NAL94_16710 PF00455 DeoR C terminal sensor domain NAL94_16710 PF08220 DeoR-like helix-turn-helix domain NAL94_16725 PF02321 Outer membrane efflux protein NAL94_16735 PF00664 ABC transporter transmembrane region NAL94_16735 PF00005 ABC transporter NAL94_16735 PF03412 Peptidase C39 family NAL94_16745 PF00884 Sulfatase NAL94_16750 PF00884 Sulfatase NAL94_16765 PF04055 Radical SAM superfamily NAL94_16765 PF13186 Iron-sulfur cluster-binding domain NAL94_16770 PF03781 Sulfatase-modifying factor enzyme 1 NAL94_16780 PF00884 Sulfatase NAL94_16785 PF00696 Amino acid kinase family NAL94_16785 PF13840 ACT domain NAL94_16790 PF06339 Ectoine synthase NAL94_16795 PF00202 Aminotransferase class-III NAL94_16800 PF00583 Acetyltransferase (GNAT) family NAL94_16805 PF02028 BCCT, betaine/carnitine/choline family transporter NAL94_16820 PF00571 CBS domain NAL94_16820 PF00005 ABC transporter NAL94_16825 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_16830 PF04069 Substrate binding domain of ABC-type glycine betaine transport system NAL94_16835 PF00884 Sulfatase NAL94_16860 PF01235 Sodium:alanine symporter family NAL94_16870 PF01810 LysE type translocator NAL94_16875 PF02074 Carboxypeptidase Taq (M32) metallopeptidase NAL94_16880 PF03279 Bacterial lipid A biosynthesis acyltransferase NAL94_16885 PF00893 Small Multidrug Resistance protein NAL94_16895 PF04204 Homoserine O-succinyltransferase NAL94_16910 PF03707 Bacterial signalling protein N terminal repeat NAL94_16910 PF00990 Diguanylate cyclase, GGDEF domain NAL94_16910 PF00563 EAL domain NAL94_16915 PF00672 HAMP domain NAL94_16915 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) NAL94_16915 PF00072 Response regulator receiver domain NAL94_16915 PF01627 Hpt domain NAL94_16915 PF00512 His Kinase A (phospho-acceptor) domain NAL94_16915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_16940 PF04237 YjbR NAL94_16945 PF01047 MarR family NAL94_16955 PF00563 EAL domain NAL94_16955 PF12792 CSS motif domain associated with EAL NAL94_16960 PF00202 Aminotransferase class-III NAL94_16965 PF00171 Aldehyde dehydrogenase family NAL94_16970 PF04371 Porphyromonas-type peptidyl-arginine deiminase NAL94_16975 PF00795 Carbon-nitrogen hydrolase NAL94_16980 PF01266 FAD dependent oxidoreductase NAL94_16985 PF00171 Aldehyde dehydrogenase family NAL94_16990 PF07883 Cupin domain NAL94_16990 PF01381 Helix-turn-helix NAL94_16995 PF07722 Peptidase C26 NAL94_17000 PF00120 Glutamine synthetase, catalytic domain NAL94_17005 PF03553 Na+/H+ antiporter family NAL94_17020 PF02694 Uncharacterised BCR, YnfA/UPF0060 family NAL94_17045 PF07007 Lysozyme inhibitor LprI NAL94_17095 PF14497 Glutathione S-transferase, C-terminal domain NAL94_17095 PF02798 Glutathione S-transferase, N-terminal domain NAL94_17105 PF04209 homogentisate 1,2-dioxygenase NAL94_17110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NAL94_17115 PF07687 Peptidase dimerisation domain NAL94_17115 PF01546 Peptidase family M20/M25/M40 NAL94_17120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_17125 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_17130 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_17130 PF12911 N-terminal TM domain of oligopeptide transport permease C NAL94_17135 PF00005 ABC transporter NAL94_17135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_17140 PF00005 ABC transporter NAL94_17140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_17150 PF01752 Collagenase NAL94_17150 PF08453 Peptidase family M9 N-terminal NAL94_17160 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_17165 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_17170 PF00005 ABC transporter NAL94_17170 PF08402 TOBE domain NAL94_17175 PF00701 Dihydrodipicolinate synthetase family NAL94_17180 PF02423 Ornithine cyclodeaminase/mu-crystallin family NAL94_17190 PF01266 FAD dependent oxidoreductase NAL94_17190 PF05430 S-adenosyl-L-methionine-dependent methyltransferase NAL94_17195 PF05544 Proline racemase NAL94_17200 PF00171 Aldehyde dehydrogenase family NAL94_17205 PF00392 Bacterial regulatory proteins, gntR family NAL94_17225 PF05971 RNA methyltransferase NAL94_17230 PF01863 Protein of unknown function DUF45 NAL94_17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_17240 PF03466 LysR substrate binding domain NAL94_17260 PF00005 ABC transporter NAL94_17265 PF01032 FecCD transport family NAL94_17270 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family NAL94_17285 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase NAL94_17290 PF02654 Cobalamin-5-phosphate synthase NAL94_17295 PF02277 Phosphoribosyltransferase NAL94_17300 PF13460 NAD(P)H-binding NAL94_17305 PF00375 Sodium:dicarboxylate symporter family NAL94_17310 PF08411 Exonuclease C-terminal NAL94_17310 PF00929 Exonuclease NAL94_17315 PF03788 LrgA family NAL94_17320 PF04172 LrgB-like family NAL94_17325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NAL94_17325 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region NAL94_17330 PF02222 ATP-grasp domain NAL94_17335 PF05724 Thiopurine S-methyltransferase (TPMT) NAL94_17345 PF00216 Bacterial DNA-binding protein NAL94_17355 PF03147 Ferredoxin-fold anticodon binding domain NAL94_17355 PF03484 tRNA synthetase B5 domain NAL94_17355 PF03483 B3/4 domain NAL94_17355 PF01588 Putative tRNA binding domain NAL94_17355 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain NAL94_17360 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain NAL94_17360 PF01409 tRNA synthetases class II core domain (F) NAL94_17395 PF01906 Putative heavy-metal-binding NAL94_17400 PF00453 Ribosomal protein L20 NAL94_17405 PF01632 Ribosomal protein L35 NAL94_17410 PF00707 Translation initiation factor IF-3, C-terminal domain NAL94_17410 PF05198 Translation initiation factor IF-3, N-terminal domain NAL94_17415 PF03129 Anticodon binding domain NAL94_17415 PF02824 TGS domain NAL94_17415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NAL94_17415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain NAL94_17430 PF00392 Bacterial regulatory proteins, gntR family NAL94_17430 PF07702 UTRA domain NAL94_17435 PF01979 Amidohydrolase family NAL94_17440 PF00491 Arginase family NAL94_17445 PF01175 Urocanase Rossmann-like domain NAL94_17445 PF17392 Urocanase C-terminal domain NAL94_17445 PF17391 Urocanase N-terminal domain NAL94_17450 PF00221 Aromatic amino acid lyase NAL94_17460 PF04191 Phospholipid methyltransferase NAL94_17465 PF01565 FAD binding domain NAL94_17465 PF13183 4Fe-4S dicluster domain NAL94_17465 PF02913 FAD linked oxidases, C-terminal domain NAL94_17480 PF00691 OmpA family NAL94_17480 PF05736 OprF membrane domain NAL94_17500 PF01259 SAICAR synthetase NAL94_17505 PF09423 PhoD-like phosphatase NAL94_17505 PF16655 PhoD-like phosphatase, N-terminal domain NAL94_17515 PF04408 Helicase associated domain (HA2) NAL94_17515 PF00271 Helicase conserved C-terminal domain NAL94_17515 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold NAL94_17515 PF00270 DEAD/DEAH box helicase NAL94_17515 PF11898 Domain of unknown function (DUF3418) NAL94_17520 PF03949 Malic enzyme, NAD binding domain NAL94_17520 PF00390 Malic enzyme, N-terminal domain NAL94_17525 PF02698 DUF218 domain NAL94_17530 PF00939 Sodium:sulfate symporter transmembrane region NAL94_17535 PF00072 Response regulator receiver domain NAL94_17535 PF00990 Diguanylate cyclase, GGDEF domain NAL94_17545 PF00266 Aminotransferase class-V NAL94_17555 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_17560 PF00664 ABC transporter transmembrane region NAL94_17560 PF00005 ABC transporter NAL94_17565 PF00005 ABC transporter NAL94_17565 PF00664 ABC transporter transmembrane region NAL94_17570 PF00291 Pyridoxal-phosphate dependent enzyme NAL94_17575 PF00266 Aminotransferase class-V NAL94_17585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_17585 PF00512 His Kinase A (phospho-acceptor) domain NAL94_17585 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_17600 PF04994 TfoX C-terminal domain NAL94_17600 PF04993 TfoX N-terminal domain NAL94_17610 PF03956 Lysine exporter LysO NAL94_17620 PF00282 Pyridoxal-dependent decarboxylase conserved domain NAL94_17625 PF01418 Helix-turn-helix domain, rpiR family NAL94_17625 PF01380 SIS domain NAL94_17630 PF00465 Iron-containing alcohol dehydrogenase NAL94_17635 PF00462 Glutaredoxin NAL94_17640 PF06826 Predicted Permease Membrane Region NAL94_17640 PF02080 TrkA-C domain NAL94_17645 PF07055 Enoyl reductase FAD binding domain NAL94_17645 PF12241 Trans-2-enoyl-CoA reductase catalytic region NAL94_17645 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAL94_17650 PF09317 Domain of unknown function (DUF1974) NAL94_17650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain NAL94_17650 PF02770 Acyl-CoA dehydrogenase, middle domain NAL94_17650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain NAL94_17655 PF00440 Bacterial regulatory proteins, tetR family NAL94_17655 PF16295 Tetracyclin repressor-like, C-terminal domain NAL94_17660 PF06965 Na+/H+ antiporter 1 NAL94_17675 PF00005 ABC transporter NAL94_17680 PF01554 MatE NAL94_17685 PF11066 Protein of unknown function (DUF2867) NAL94_17685 PF13460 NAD(P)H-binding NAL94_17695 PF07690 Major Facilitator Superfamily NAL94_17700 PF00849 RNA pseudouridylate synthase NAL94_17700 PF01479 S4 domain NAL94_17705 PF04851 Type III restriction enzyme, res subunit NAL94_17705 PF00271 Helicase conserved C-terminal domain NAL94_17715 PF00072 Response regulator receiver domain NAL94_17715 PF00486 Transcriptional regulatory protein, C terminal NAL94_17720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_17725 PF01386 Ribosomal L25p family NAL94_17735 PF02872 5'-nucleotidase, C-terminal domain NAL94_17735 PF00149 Calcineurin-like phosphoesterase NAL94_17745 PF06945 Protein of unknown function (DUF1289) NAL94_17755 PF13416 Bacterial extracellular solute-binding protein NAL94_17760 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_17765 PF00005 ABC transporter NAL94_17770 PF01066 CDP-alcohol phosphatidyltransferase NAL94_17780 PF00158 Sigma-54 interaction domain NAL94_17780 PF01590 GAF domain NAL94_17785 PF03063 Prismane/CO dehydrogenase family NAL94_17790 PF00175 Oxidoreductase NAD-binding domain NAL94_17790 PF00111 2Fe-2S iron-sulfur cluster binding domain NAL94_17790 PF00970 Oxidoreductase FAD-binding domain NAL94_17795 PF01170 Putative RNA methylase family UPF0020 NAL94_17795 PF02926 THUMP domain NAL94_17795 PF10672 S-adenosylmethionine-dependent methyltransferase NAL94_17800 PF00849 RNA pseudouridylate synthase NAL94_17805 PF00209 Sodium:neurotransmitter symporter family NAL94_17810 PF13396 Phospholipase_D-nuclease N-terminal NAL94_17810 PF13091 PLD-like domain NAL94_17815 PF01053 Cys/Met metabolism PLP-dependent enzyme NAL94_17820 PF00561 alpha/beta hydrolase fold NAL94_17825 PF03280 Proteobacterial lipase chaperone protein NAL94_17830 PF03352 Methyladenine glycosylase NAL94_17835 PF00873 AcrB/AcrD/AcrF family NAL94_17840 PF13533 Biotin-lipoyl like NAL94_17850 PF04024 PspC domain NAL94_17855 PF06667 Phage shock protein B NAL94_17860 PF04012 PspA/IM30 family NAL94_17865 PF02954 Bacterial regulatory protein, Fis family NAL94_17865 PF00158 Sigma-54 interaction domain NAL94_17870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_17875 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_17880 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_17880 PF12911 N-terminal TM domain of oligopeptide transport permease C NAL94_17885 PF00005 ABC transporter NAL94_17885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_17890 PF00005 ABC transporter NAL94_17900 PF01368 DHH family NAL94_17900 PF02833 DHHA2 domain NAL94_17910 PF16874 Glycosyl hydrolase family 36 C-terminal domain NAL94_17910 PF16875 Glycosyl hydrolase family 36 N-terminal domain NAL94_17915 PF00384 Molybdopterin oxidoreductase NAL94_17915 PF18364 Molybdopterin oxidoreductase N-terminal domain NAL94_17915 PF01568 Molydopterin dinucleotide binding domain NAL94_17920 PF03264 NapC/NirT cytochrome c family, N-terminal region NAL94_17925 PF06796 Periplasmic nitrate reductase protein NapE NAL94_17930 PF03649 Uncharacterised protein family (UPF0014) NAL94_17940 PF01226 Formate/nitrite transporter NAL94_17965 PF02698 DUF218 domain NAL94_17970 PF00265 Thymidine kinase NAL94_17975 PF01406 tRNA synthetases class I (C) catalytic domain NAL94_17975 PF09190 DALR domain NAL94_17980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD NAL94_17985 PF00149 Calcineurin-like phosphoesterase NAL94_17990 PF00563 EAL domain NAL94_17990 PF08668 HDOD domain NAL94_17995 PF02810 SEC-C motif NAL94_18000 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase NAL94_18000 PF01502 Phosphoribosyl-AMP cyclohydrolase NAL94_18005 PF00977 Histidine biosynthesis protein NAL94_18010 PF00977 Histidine biosynthesis protein NAL94_18015 PF00117 Glutamine amidotransferase class-I NAL94_18020 PF00475 Imidazoleglycerol-phosphate dehydratase NAL94_18020 PF08645 Polynucleotide kinase 3 phosphatase NAL94_18025 PF00155 Aminotransferase class I and II NAL94_18030 PF00815 Histidinol dehydrogenase NAL94_18035 PF01634 ATP phosphoribosyltransferase NAL94_18035 PF08029 HisG, C-terminal domain NAL94_18040 PF03553 Na+/H+ antiporter family NAL94_18045 PF00816 H-NS histone family NAL94_18050 PF00294 pfkB family carbohydrate kinase NAL94_18065 PF04356 Protein of unknown function (DUF489) NAL94_18070 PF08328 Adenylosuccinate lyase C-terminal NAL94_18070 PF00206 Lyase NAL94_18080 PF16036 Chalcone isomerase-like NAL94_18105 PF00106 short chain dehydrogenase NAL94_18115 PF01435 Peptidase family M48 NAL94_18130 PF12697 Alpha/beta hydrolase family NAL94_18130 PF08241 Methyltransferase domain NAL94_18135 PF00155 Aminotransferase class I and II NAL94_18140 PF04055 Radical SAM superfamily NAL94_18140 PF06968 Biotin and Thiamin Synthesis associated domain NAL94_18145 PF00202 Aminotransferase class-III NAL94_18150 PF01258 Prokaryotic dksA/traR C4-type zinc finger NAL94_18165 PF02403 Seryl-tRNA synthetase N-terminal domain NAL94_18165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) NAL94_18170 PF00004 ATPase family associated with various cellular activities (AAA) NAL94_18170 PF16193 AAA C-terminal domain NAL94_18170 PF12002 MgsA AAA+ ATPase C terminal NAL94_18175 PF03548 Outer membrane lipoprotein carrier protein LolA NAL94_18180 PF01580 FtsK/SpoIIIE family NAL94_18180 PF09397 Ftsk gamma domain NAL94_18180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE NAL94_18180 PF17854 FtsK alpha domain NAL94_18185 PF01037 Lrp/AsnC ligand binding domain NAL94_18190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain NAL94_18190 PF05222 Alanine dehydrogenase/PNT, N-terminal domain NAL94_18200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_18200 PF03466 LysR substrate binding domain NAL94_18210 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) NAL94_18215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_18215 PF00672 HAMP domain NAL94_18225 PF03372 Endonuclease/Exonuclease/phosphatase family NAL94_18235 PF00579 tRNA synthetases class I (W and Y) NAL94_18250 PF00873 AcrB/AcrD/AcrF family NAL94_18255 PF00529 HlyD membrane-fusion protein of T1SS NAL94_18255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_18260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_18260 PF17200 Single Cache domain 2 NAL94_18260 PF00672 HAMP domain NAL94_18275 PF01654 Cytochrome bd terminal oxidase subunit I NAL94_18280 PF02322 Cytochrome bd terminal oxidase subunit II NAL94_18290 PF06610 L-alanine exporter NAL94_18295 PF00072 Response regulator receiver domain NAL94_18295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_18295 PF00512 His Kinase A (phospho-acceptor) domain NAL94_18295 PF09308 LuxQ, periplasmic NAL94_18305 PF03738 Glutathionylspermidine synthase preATP-grasp NAL94_18315 PF03994 Domain of Unknown Function (DUF350) NAL94_18325 PF02445 Quinolinate synthetase A protein NAL94_18330 PF16331 TolA binding protein trimerisation NAL94_18330 PF13174 Tetratricopeptide repeat NAL94_18335 PF00691 OmpA family NAL94_18340 PF07676 WD40-like Beta Propeller Repeat NAL94_18340 PF04052 TolB amino-terminal domain NAL94_18350 PF02472 Biopolymer transport protein ExbD/TolR NAL94_18355 PF01618 MotA/TolQ/ExbB proton channel family NAL94_18360 PF03061 Thioesterase superfamily NAL94_18370 PF08173 Membrane bound YbgT-like protein NAL94_18375 PF02322 Cytochrome bd terminal oxidase subunit II NAL94_18380 PF01654 Cytochrome bd terminal oxidase subunit I NAL94_18385 PF17864 RuvB AAA lid domain NAL94_18385 PF05491 RuvB C-terminal winged helix domain NAL94_18385 PF05496 Holliday junction DNA helicase RuvB P-loop domain NAL94_18390 PF07499 RuvA, C-terminal domain NAL94_18390 PF01330 RuvA N terminal domain NAL94_18395 PF02075 Crossover junction endodeoxyribonuclease RuvC NAL94_18400 PF01709 Transcriptional regulator NAL94_18405 PF02938 GAD domain NAL94_18405 PF00152 tRNA synthetases class II (D, K and N) NAL94_18405 PF01336 OB-fold nucleic acid binding domain NAL94_18410 PF01904 Protein of unknown function DUF72 NAL94_18415 PF13649 Methyltransferase domain NAL94_18420 PF08003 Protein of unknown function (DUF1698) NAL94_18425 PF18030 RimK PreATP-grasp domain NAL94_18425 PF08443 RimK-like ATP-grasp domain NAL94_18445 PF04310 MukB N-terminal NAL94_18445 PF16330 MukB hinge domain NAL94_18450 PF04288 MukE-like family NAL94_18455 PF03882 MukF winged-helix domain NAL94_18455 PF17193 MukF C-terminal domain NAL94_18455 PF17192 MukF middle domain NAL94_18460 PF13847 Methyltransferase domain NAL94_18465 PF02698 DUF218 domain NAL94_18470 PF00072 Response regulator receiver domain NAL94_18470 PF00486 Transcriptional regulatory protein, C terminal NAL94_18475 PF02613 Nitrate reductase delta subunit NAL94_18480 PF00356 Bacterial regulatory proteins, lacI family NAL94_18485 PF04994 TfoX C-terminal domain NAL94_18485 PF04993 TfoX N-terminal domain NAL94_18505 PF08323 Starch synthase catalytic domain NAL94_18505 PF00534 Glycosyl transferases group 1 NAL94_18510 PF00483 Nucleotidyl transferase NAL94_18515 PF01396 Topoisomerase DNA binding C4 zinc finger NAL94_18515 PF08272 Topoisomerase I zinc-ribbon-like NAL94_18515 PF01131 DNA topoisomerase NAL94_18515 PF01751 Toprim domain NAL94_18520 PF10692 Protein of unknown function (DUF2498) NAL94_18525 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) NAL94_18535 PF03588 Leucyl/phenylalanyl-tRNA protein transferase NAL94_18540 PF04377 Arginine-tRNA-protein transferase, C terminus NAL94_18540 PF04376 Arginine-tRNA-protein transferase, N terminus NAL94_18545 PF01176 Translation initiation factor 1A / IF-1 NAL94_18550 PF10431 C-terminal, D2-small domain, of ClpB protein NAL94_18550 PF00004 ATPase family associated with various cellular activities (AAA) NAL94_18550 PF07724 AAA domain (Cdc48 subfamily) NAL94_18550 PF17871 AAA lid domain NAL94_18550 PF02861 Clp amino terminal domain, pathogenicity island component NAL94_18555 PF02617 ATP-dependent Clp protease adaptor protein ClpS NAL94_18560 PF00313 'Cold-shock' DNA-binding domain NAL94_18565 PF03971 Monomeric isocitrate dehydrogenase NAL94_18570 PF00849 RNA pseudouridylate synthase NAL94_18575 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NAL94_18585 PF06733 DEAD_2 NAL94_18585 PF13307 Helicase C-terminal domain NAL94_18590 PF01925 Sulfite exporter TauE/SafE NAL94_18595 PF07445 Primosomal replication protein priC NAL94_18600 PF10689 Protein of unknown function (DUF2496) NAL94_18605 PF03372 Endonuclease/Exonuclease/phosphatase family NAL94_18615 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_18620 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_18625 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_18630 PF00005 ABC transporter NAL94_18645 PF02901 Pyruvate formate lyase-like NAL94_18645 PF01228 Glycine radical NAL94_18655 PF04055 Radical SAM superfamily NAL94_18665 PF03887 YfbU domain NAL94_18670 PF08298 PrkA AAA domain NAL94_18670 PF06798 PrkA serine protein kinase C-terminal domain NAL94_18675 PF04285 Protein of unknown function (DUF444) NAL94_18680 PF04293 SpoVR like protein NAL94_18685 PF02348 Cytidylyltransferase NAL94_18690 PF03966 Trm112p-like protein NAL94_18695 PF02606 Tetraacyldisaccharide-1-P 4'-kinase NAL94_18700 PF00664 ABC transporter transmembrane region NAL94_18700 PF00005 ABC transporter NAL94_18705 PF13567 Domain of unknown function (DUF4131) NAL94_18705 PF03772 Competence protein NAL94_18705 PF00753 Metallo-beta-lactamase superfamily NAL94_18715 PF02687 FtsX-like permease family NAL94_18715 PF12704 MacB-like periplasmic core domain NAL94_18720 PF00005 ABC transporter NAL94_18725 PF02687 FtsX-like permease family NAL94_18725 PF12704 MacB-like periplasmic core domain NAL94_18735 PF03461 TRCF domain NAL94_18735 PF17757 UvrB interaction domain NAL94_18735 PF00270 DEAD/DEAH box helicase NAL94_18735 PF00271 Helicase conserved C-terminal domain NAL94_18735 PF02559 CarD-like/TRCF domain NAL94_18750 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_18755 PF05728 Uncharacterised protein family (UPF0227) NAL94_18765 PF08139 Prokaryotic membrane lipoprotein lipid attachment site NAL94_18765 PF13036 Peptidoglycan-synthase activator LpoB NAL94_18780 PF01230 HIT domain NAL94_18785 PF00672 HAMP domain NAL94_18785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_18795 PF01048 Phosphorylase superfamily NAL94_18800 PF00403 Heavy-metal-associated domain NAL94_18805 PF00571 CBS domain NAL94_18805 PF00478 IMP dehydrogenase / GMP reductase domain NAL94_18810 PF00588 SpoU rRNA Methylase family NAL94_18810 PF08032 RNA 2'-O ribose methyltransferase substrate binding NAL94_18820 PF00990 Diguanylate cyclase, GGDEF domain NAL94_18830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain NAL94_18835 PF09619 Type III secretion system lipoprotein chaperone (YscW) NAL94_18850 PF13404 AsnC-type helix-turn-helix domain NAL94_18850 PF01037 Lrp/AsnC ligand binding domain NAL94_18855 PF00291 Pyridoxal-phosphate dependent enzyme NAL94_18870 PF00873 AcrB/AcrD/AcrF family NAL94_18875 PF00529 HlyD membrane-fusion protein of T1SS NAL94_18875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_18920 PF07690 Major Facilitator Superfamily NAL94_18925 PF03601 Conserved hypothetical protein 698 NAL94_18935 PF00501 AMP-binding enzyme NAL94_18935 PF13193 AMP-binding enzyme C-terminal domain NAL94_18940 PF13378 Enolase C-terminal domain-like NAL94_18945 PF00378 Enoyl-CoA hydratase/isomerase NAL94_18950 PF12697 Alpha/beta hydrolase family NAL94_18955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NAL94_18955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NAL94_18955 PF16582 Middle domain of thiamine pyrophosphate NAL94_18960 PF00425 chorismate binding enzyme NAL94_18965 PF00155 Aminotransferase class I and II NAL94_18975 PF13286 Phosphohydrolase-associated domain NAL94_18975 PF01966 HD domain NAL94_18995 PF13145 PPIC-type PPIASE domain NAL94_19000 PF00216 Bacterial DNA-binding protein NAL94_19005 PF00004 ATPase family associated with various cellular activities (AAA) NAL94_19005 PF05362 Lon protease (S16) C-terminal proteolytic domain NAL94_19005 PF02190 ATP-dependent protease La (LON) substrate-binding domain NAL94_19010 PF07724 AAA domain (Cdc48 subfamily) NAL94_19010 PF06689 ClpX C4-type zinc finger NAL94_19010 PF10431 C-terminal, D2-small domain, of ClpB protein NAL94_19015 PF00574 Clp protease NAL94_19020 PF05697 Bacterial trigger factor protein (TF) NAL94_19020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NAL94_19020 PF05698 Bacterial trigger factor protein (TF) C-terminus NAL94_19030 PF02743 Cache domain NAL94_19030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_19030 PF00512 His Kinase A (phospho-acceptor) domain NAL94_19035 PF02954 Bacterial regulatory protein, Fis family NAL94_19035 PF00072 Response regulator receiver domain NAL94_19035 PF00158 Sigma-54 interaction domain NAL94_19045 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component NAL94_19050 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component NAL94_19055 PF03480 Bacterial extracellular solute-binding protein, family 7 NAL94_19060 PF02696 Uncharacterized ACR, YdiU/UPF0061 family NAL94_19075 PF02386 Cation transport protein NAL94_19080 PF02080 TrkA-C domain NAL94_19080 PF02254 TrkA-N domain NAL94_19085 PF00271 Helicase conserved C-terminal domain NAL94_19085 PF00270 DEAD/DEAH box helicase NAL94_19095 PF04820 Tryptophan halogenase NAL94_19120 PF00550 Phosphopantetheine attachment site NAL94_19125 PF00550 Phosphopantetheine attachment site NAL94_19140 PF07977 FabA-like domain NAL94_19145 PF00535 Glycosyl transferase family 2 NAL94_19150 PF00221 Aromatic amino acid lyase NAL94_19175 PF00109 Beta-ketoacyl synthase, N-terminal domain NAL94_19175 PF02801 Beta-ketoacyl synthase, C-terminal domain NAL94_19180 PF07977 FabA-like domain NAL94_19190 PF02801 Beta-ketoacyl synthase, C-terminal domain NAL94_19190 PF00109 Beta-ketoacyl synthase, N-terminal domain NAL94_19195 PF01209 ubiE/COQ5 methyltransferase family NAL94_19205 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain NAL94_19205 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAL94_19210 PF07662 Na+ dependent nucleoside transporter C-terminus NAL94_19210 PF07670 Nucleoside recognition NAL94_19210 PF01773 Na+ dependent nucleoside transporter N-terminus NAL94_19215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_19215 PF03466 LysR substrate binding domain NAL94_19220 PF13406 Transglycosylase SLT domain NAL94_19225 PF05166 YcgL domain NAL94_19230 PF03775 Septum formation inhibitor MinC, C-terminal domain NAL94_19230 PF05209 Septum formation inhibitor MinC, N-terminal domain NAL94_19235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain NAL94_19240 PF03776 Septum formation topological specificity factor MinE NAL94_19245 PF01612 3'-5' exonuclease NAL94_19245 PF00570 HRDC domain NAL94_19250 PF00501 AMP-binding enzyme NAL94_19250 PF13193 AMP-binding enzyme C-terminal domain NAL94_19255 PF00561 alpha/beta hydrolase fold NAL94_19260 PF03843 Outer membrane lipoprotein Slp family NAL94_19270 PF00814 Glycoprotease family NAL94_19275 PF04851 Type III restriction enzyme, res subunit NAL94_19275 PF13307 Helicase C-terminal domain NAL94_19280 PF01842 ACT domain NAL94_19280 PF00551 Formyl transferase NAL94_19285 PF06185 YecM protein NAL94_19290 PF03485 Arginyl tRNA synthetase N terminal domain NAL94_19290 PF00750 tRNA synthetases class I (R) NAL94_19290 PF05746 DALR anticodon binding domain NAL94_19310 PF02421 Ferrous iron transport protein B NAL94_19310 PF07670 Nucleoside recognition NAL94_19310 PF07664 Ferrous iron transport protein B C terminus NAL94_19310 PF17910 FeoB cytosolic helical domain NAL94_19315 PF04023 FeoA domain NAL94_19320 PF02311 AraC-like ligand binding domain NAL94_19320 PF12833 Helix-turn-helix domain NAL94_19325 PF01297 Zinc-uptake complex component A periplasmic NAL94_19330 PF00005 ABC transporter NAL94_19335 PF00950 ABC 3 transport family NAL94_19340 PF02629 CoA binding domain NAL94_19340 PF00549 CoA-ligase NAL94_19345 PF08442 ATP-grasp domain NAL94_19345 PF00549 CoA-ligase NAL94_19350 PF02817 e3 binding domain NAL94_19350 PF00364 Biotin-requiring enzyme NAL94_19350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) NAL94_19355 PF16870 2-oxoglutarate dehydrogenase C-terminal NAL94_19355 PF00676 Dehydrogenase E1 component NAL94_19355 PF16078 2-oxoglutarate dehydrogenase N-terminus NAL94_19355 PF02779 Transketolase, pyrimidine binding domain NAL94_19360 PF13085 2Fe-2S iron-sulfur cluster binding domain NAL94_19365 PF02910 Fumarate reductase flavoprotein C-term NAL94_19365 PF00890 FAD binding domain NAL94_19370 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NAL94_19375 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit NAL94_19380 PF00285 Citrate synthase, C-terminal domain NAL94_19385 PF01784 NIF3 (NGG1p interacting factor 3) NAL94_19395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II NAL94_19395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain NAL94_19395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I NAL94_19395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III NAL94_19400 PF17206 SeqA protein N-terminal domain NAL94_19400 PF03925 SeqA protein C-terminal domain NAL94_19405 PF12697 Alpha/beta hydrolase family NAL94_19415 PF00258 Flavodoxin NAL94_19425 PF01475 Ferric uptake regulator family NAL94_19430 PF00749 tRNA synthetases class I (E and Q), catalytic domain NAL94_19430 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain NAL94_19435 PF02378 Phosphotransferase system, EIIC NAL94_19435 PF00367 phosphotransferase system, EIIB NAL94_19435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NAL94_19440 PF01979 Amidohydrolase family NAL94_19445 PF01047 MarR family NAL94_19445 PF00480 ROK family NAL94_19450 PF00999 Sodium/hydrogen exchanger family NAL94_19450 PF02254 TrkA-N domain NAL94_19455 PF13537 Glutamine amidotransferase domain NAL94_19455 PF00733 Asparagine synthase NAL94_19460 PF02357 Transcription termination factor nusG NAL94_19465 PF00854 POT family NAL94_19470 PF00762 Ferrochelatase NAL94_19475 PF05191 Adenylate kinase, active site lid NAL94_19480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_19480 PF00183 Hsp90 protein NAL94_19485 PF00486 Transcriptional regulatory protein, C terminal NAL94_19490 PF17323 Trans-membrane regulatory protein ToxS NAL94_19505 PF12850 Calcineurin-like phosphoesterase superfamily domain NAL94_19525 PF07556 Protein of unknown function (DUF1538) NAL94_19530 PF07556 Protein of unknown function (DUF1538) NAL94_19535 PF01370 NAD dependent epimerase/dehydratase family NAL94_19535 PF08338 Domain of unknown function (DUF1731) NAL94_19540 PF00106 short chain dehydrogenase NAL94_19545 PF00085 Thioredoxin NAL94_19550 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) NAL94_19555 PF01270 Glycosyl hydrolases family 8 NAL94_19560 PF03170 Bacterial cellulose synthase subunit NAL94_19565 PF07238 PilZ domain NAL94_19565 PF00535 Glycosyl transferase family 2 NAL94_19565 PF03552 Cellulose synthase NAL94_19570 PF06564 Cellulose biosynthesis protein BcsQ NAL94_19580 PF10995 Cellulose biosynthesis GIL NAL94_19590 PF11658 Cellulose biosynthesis protein BcsG NAL94_19595 PF01145 SPFH domain / Band 7 family NAL94_19595 PF16200 C-terminal region of band_7 NAL94_19610 PF03573 outer membrane porin, OprD family NAL94_19615 PF03119 NAD-dependent DNA ligase C4 zinc finger domain NAL94_19615 PF00533 BRCA1 C Terminus (BRCT) domain NAL94_19615 PF01653 NAD-dependent DNA ligase adenylation domain NAL94_19615 PF03120 NAD-dependent DNA ligase OB-fold domain NAL94_19615 PF12826 Helix-hairpin-helix motif NAL94_19620 PF04354 ZipA, C-terminal FtsZ-binding domain NAL94_19630 PF00291 Pyridoxal-phosphate dependent enzyme NAL94_19635 PF00381 PTS HPr component phosphorylation site NAL94_19640 PF05524 PEP-utilising enzyme, N-terminal NAL94_19640 PF02896 PEP-utilising enzyme, TIM barrel domain NAL94_19640 PF00391 PEP-utilising enzyme, mobile domain NAL94_19645 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NAL94_19650 PF00669 Bacterial flagellin N-terminal helical region NAL94_19650 PF07196 Flagellin hook IN motif NAL94_19650 PF00700 Bacterial flagellin C-terminal helical region NAL94_19655 PF00669 Bacterial flagellin N-terminal helical region NAL94_19655 PF07196 Flagellin hook IN motif NAL94_19655 PF00700 Bacterial flagellin C-terminal helical region NAL94_19660 PF00700 Bacterial flagellin C-terminal helical region NAL94_19660 PF00669 Bacterial flagellin N-terminal helical region NAL94_19660 PF07196 Flagellin hook IN motif NAL94_19665 PF00669 Bacterial flagellin N-terminal helical region NAL94_19670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_19670 PF07196 Flagellin hook IN motif NAL94_19675 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase NAL94_19675 PF10135 Rod binding protein NAL94_19680 PF02119 Flagellar P-ring protein NAL94_19685 PF02107 Flagellar L-ring protein NAL94_19690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_19690 PF00460 Flagella basal body rod protein NAL94_19695 PF00460 Flagella basal body rod protein NAL94_19695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_19700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_19700 PF07559 Flagellar basal body protein FlaE NAL94_19700 PF00460 Flagella basal body rod protein NAL94_19705 PF13861 FlgD Tudor-like domain NAL94_19705 PF03963 Flagellar hook capping protein - N-terminal region NAL94_19705 PF13860 FlgD Ig-like domain NAL94_19710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal NAL94_19710 PF00460 Flagella basal body rod protein NAL94_19715 PF00460 Flagella basal body rod protein NAL94_19720 PF01739 CheR methyltransferase, SAM binding domain NAL94_19720 PF03705 CheR methyltransferase, all-alpha domain NAL94_19725 PF01584 CheW-like domain NAL94_19725 PF00072 Response regulator receiver domain NAL94_19770 PF00691 OmpA family NAL94_19770 PF01389 OmpA-like transmembrane domain NAL94_19775 PF00749 tRNA synthetases class I (E and Q), catalytic domain NAL94_19780 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) NAL94_19785 PF13609 Gram-negative porin NAL94_19790 PF00403 Heavy-metal-associated domain NAL94_19805 PF03173 Putative carbohydrate binding domain NAL94_19805 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain NAL94_19805 PF00728 Glycosyl hydrolase family 20, catalytic domain NAL94_19805 PF02838 Glycosyl hydrolase family 20, domain 2 NAL94_19830 PF01713 Smr domain NAL94_19835 PF00849 RNA pseudouridylate synthase NAL94_19835 PF01479 S4 domain NAL94_19840 PF04073 Aminoacyl-tRNA editing domain NAL94_19845 PF00149 Calcineurin-like phosphoesterase NAL94_19845 PF02872 5'-nucleotidase, C-terminal domain NAL94_19850 PF00793 DAHP synthetase I family NAL94_19855 PF13369 Transglutaminase-like superfamily NAL94_19860 PF04247 Invasion gene expression up-regulator, SirB NAL94_19865 PF17827 PrmC N-terminal domain NAL94_19865 PF13847 Methyltransferase domain NAL94_19870 PF03462 PCRF domain NAL94_19870 PF00472 RF-1 domain NAL94_19875 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain NAL94_19875 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain NAL94_19875 PF01488 Shikimate / quinate 5-dehydrogenase NAL94_19880 PF03550 Outer membrane lipoprotein LolB NAL94_19885 PF08544 GHMP kinases C terminal NAL94_19885 PF00288 GHMP kinases N terminal domain NAL94_19890 PF14572 Phosphoribosyl synthetase-associated domain NAL94_19890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase NAL94_19895 PF01195 Peptidyl-tRNA hydrolase NAL94_19900 PF01926 50S ribosome-binding GTPase NAL94_19900 PF06071 Protein of unknown function (DUF933) NAL94_20005 PF01494 FAD binding domain NAL94_20010 PF00919 Uncharacterized protein family UPF0004 NAL94_20010 PF04055 Radical SAM superfamily NAL94_20010 PF01938 TRAM domain NAL94_20015 PF02562 PhoH-like protein NAL94_20020 PF02130 Uncharacterized protein family UPF0054 NAL94_20025 PF00571 CBS domain NAL94_20025 PF03471 Transporter associated domain NAL94_20030 PF00795 Carbon-nitrogen hydrolase NAL94_20035 PF07295 Zinc-ribbon containing domain NAL94_20040 PF13603 Leucyl-tRNA synthetase, Domain 2 NAL94_20040 PF00133 tRNA synthetases class I (I, L, M and V) NAL94_20040 PF08264 Anticodon-binding domain of tRNA NAL94_20045 PF04390 Lipopolysaccharide-assembly NAL94_20050 PF14840 Processivity clamp loader gamma complex DNA pol III C-term NAL94_20050 PF06144 DNA polymerase III, delta subunit NAL94_20060 PF02590 Predicted SPOUT methyltransferase NAL94_20065 PF03717 Penicillin-binding Protein dimerisation domain NAL94_20065 PF00905 Penicillin binding protein transpeptidase domain NAL94_20070 PF01098 Cell cycle protein NAL94_20075 PF05036 Sporulation related domain NAL94_20075 PF03330 Lytic transglycolase NAL94_20080 PF00768 D-alanyl-D-alanine carboxypeptidase NAL94_20080 PF07943 Penicillin-binding protein 5, C-terminal domain NAL94_20085 PF04359 Protein of unknown function (DUF493) NAL94_20090 PF03099 Biotin/lipoate A/B protein ligase family NAL94_20095 PF04055 Radical SAM superfamily NAL94_20095 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family NAL94_20100 PF00464 Serine hydroxymethyltransferase NAL94_20105 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) NAL94_20105 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 NAL94_20120 PF00128 Alpha amylase, catalytic domain NAL94_20120 PF16657 Maltogenic Amylase, C-terminal domain NAL94_20125 PF00367 phosphotransferase system, EIIB NAL94_20125 PF02378 Phosphotransferase system, EIIC NAL94_20130 PF00356 Bacterial regulatory proteins, lacI family NAL94_20140 PF00005 ABC transporter NAL94_20140 PF09383 NIL domain NAL94_20145 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_20150 PF03180 NLPA lipoprotein NAL94_20155 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) NAL94_20160 PF07348 Syd protein (SUKH-2) NAL94_20165 PF14489 QueF-like protein NAL94_20165 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term NAL94_20175 PF00990 Diguanylate cyclase, GGDEF domain NAL94_20180 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases NAL94_20180 PF03641 Possible lysine decarboxylase NAL94_20180 PF11892 Domain of unknown function (DUF3412) NAL94_20185 PF01367 5'-3' exonuclease, C-terminal SAM fold NAL94_20185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NAL94_20190 PF01728 FtsJ-like methyltransferase NAL94_20190 PF18125 RlmM ferredoxin-like domain NAL94_20195 PF04241 Protein of unknown function (DUF423) NAL94_20205 PF03466 LysR substrate binding domain NAL94_20205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_20210 PF02568 Thiamine biosynthesis protein (ThiI) NAL94_20210 PF02926 THUMP domain NAL94_20215 PF13677 Membrane MotB of proton-channel complex MotA/MotB NAL94_20215 PF00691 OmpA family NAL94_20220 PF01618 MotA/TolQ/ExbB proton channel family NAL94_20225 PF02609 Exonuclease VII small subunit NAL94_20230 PF00348 Polyprenyl synthetase NAL94_20235 PF02779 Transketolase, pyrimidine binding domain NAL94_20235 PF13292 1-deoxy-D-xylulose-5-phosphate synthase NAL94_20235 PF02780 Transketolase, C-terminal domain NAL94_20240 PF04608 Phosphatidylglycerophosphatase A NAL94_20245 PF00586 AIR synthase related protein, N-terminal domain NAL94_20245 PF02769 AIR synthase related protein, C-terminal domain NAL94_20250 PF01029 NusB family NAL94_20255 PF00885 6,7-dimethyl-8-ribityllumazine synthase NAL94_20260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase NAL94_20260 PF00925 GTP cyclohydrolase II NAL94_20265 PF00677 Lumazine binding domain NAL94_20270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region NAL94_20270 PF01872 RibD C-terminal domain NAL94_20275 PF03477 ATP cone domain NAL94_20280 PF00171 Aldehyde dehydrogenase family NAL94_20285 PF01472 PUA domain NAL94_20285 PF00696 Amino acid kinase family NAL94_20290 PF07417 Sigma factor-binding transcriptional regulator Crl NAL94_20295 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) NAL94_20300 PF00156 Phosphoribosyl transferase domain NAL94_20305 PF00860 Permease family NAL94_20310 PF07687 Peptidase dimerisation domain NAL94_20310 PF01546 Peptidase family M20/M25/M40 NAL94_20325 PF07715 TonB-dependent Receptor Plug Domain NAL94_20325 PF00593 TonB dependent receptor NAL94_20340 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal NAL94_20340 PF02769 AIR synthase related protein, C-terminal domain NAL94_20340 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain NAL94_20345 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_20345 PF01464 Transglycosylase SLT domain NAL94_20350 PF14437 MafB19-like deaminase NAL94_20355 PF03806 AbgT putative transporter family NAL94_20380 PF07963 Prokaryotic N-terminal methylation motif NAL94_20380 PF00114 Pilin (bacterial filament) NAL94_20385 PF00226 DnaJ domain NAL94_20385 PF00684 DnaJ central domain NAL94_20385 PF01556 DnaJ C terminal domain NAL94_20390 PF00012 Hsp70 protein NAL94_20395 PF00375 Sodium:dicarboxylate symporter family NAL94_20400 PF01025 GrpE NAL94_20405 PF01513 ATP-NAD kinase NAL94_20415 PF02463 RecF/RecN/SMC N terminal domain NAL94_20425 PF04355 SmpA / OmlA family NAL94_20430 PF03658 RnfH family Ubiquitin NAL94_20435 PF03364 Polyketide cyclase / dehydrase and lipid transport NAL94_20440 PF01668 SmpB protein NAL94_20450 PF13356 Arm DNA-binding domain NAL94_20450 PF00589 Phage integrase family NAL94_20475 PF00271 Helicase conserved C-terminal domain NAL94_20475 PF04851 Type III restriction enzyme, res subunit NAL94_20475 PF02151 UvrB/uvrC motif NAL94_20475 PF12344 Ultra-violet resistance protein B NAL94_20475 PF17757 UvrB interaction domain NAL94_20505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_20505 PF03466 LysR substrate binding domain NAL94_20510 PF00795 Carbon-nitrogen hydrolase NAL94_20510 PF00583 Acetyltransferase (GNAT) family NAL94_20530 PF00202 Aminotransferase class-III NAL94_20535 PF01053 Cys/Met metabolism PLP-dependent enzyme NAL94_20545 PF01266 FAD dependent oxidoreductase NAL94_20550 PF01235 Sodium:alanine symporter family NAL94_20555 PF01184 GPR1/FUN34/yaaH family NAL94_20560 PF00704 Glycosyl hydrolases family 18 NAL94_20560 PF06483 Chitinase C NAL94_20565 PF03553 Na+/H+ antiporter family NAL94_20570 PF02540 NAD synthase NAL94_20570 PF00958 GMP synthase C terminal domain NAL94_20570 PF00117 Glutamine amidotransferase class-I NAL94_20575 PF00478 IMP dehydrogenase / GMP reductase domain NAL94_20575 PF00571 CBS domain NAL94_20580 PF02601 Exonuclease VII, large subunit NAL94_20580 PF13742 OB-fold nucleic acid binding domain NAL94_20595 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal NAL94_20595 PF01926 50S ribosome-binding GTPase NAL94_20600 PF13360 PQQ-like domain NAL94_20605 PF09976 Tetratricopeptide repeat-like domain NAL94_20610 PF03129 Anticodon binding domain NAL94_20610 PF13393 Histidyl-tRNA synthetase NAL94_20615 PF04551 GcpE protein NAL94_20620 PF13464 Domain of unknown function (DUF4115) NAL94_20625 PF04055 Radical SAM superfamily NAL94_20630 PF00334 Nucleoside diphosphate kinase NAL94_20635 PF12404 Peptidase NAL94_20635 PF00883 Cytosol aminopeptidase family, catalytic domain NAL94_20640 PF04384 Iron-sulphur cluster assembly NAL94_20645 PF00111 2Fe-2S iron-sulfur cluster binding domain NAL94_20650 PF00012 Hsp70 protein NAL94_20655 PF07743 HSCB C-terminal oligomerisation domain NAL94_20655 PF00226 DnaJ domain NAL94_20660 PF01521 Iron-sulphur cluster biosynthesis NAL94_20665 PF01592 NifU-like N terminal domain NAL94_20670 PF00266 Aminotransferase class-V NAL94_20675 PF02082 Transcriptional regulator NAL94_20680 PF00588 SpoU rRNA Methylase family NAL94_20685 PF00459 Inositol monophosphatase family NAL94_20700 PF07549 SecD/SecF GG Motif NAL94_20700 PF02355 Protein export membrane protein NAL94_20705 PF07549 SecD/SecF GG Motif NAL94_20705 PF02355 Protein export membrane protein NAL94_20705 PF13721 SecD export protein N-terminal TM region NAL94_20710 PF02699 Preprotein translocase subunit NAL94_20715 PF01702 Queuine tRNA-ribosyltransferase NAL94_20720 PF02547 Queuosine biosynthesis protein NAL94_20730 PF00571 CBS domain NAL94_20735 PF00463 Isocitrate lyase family NAL94_20740 PF01274 Malate synthase NAL94_20745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_20745 PF03466 LysR substrate binding domain NAL94_20750 PF10417 C-terminal domain of 1-Cys peroxiredoxin NAL94_20750 PF00578 AhpC/TSA family NAL94_20755 PF03932 CutC family NAL94_20760 PF03976 Polyphosphate kinase 2 (PPK2) NAL94_20765 PF01895 PhoU domain NAL94_20770 PF00005 ABC transporter NAL94_20775 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_20780 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_20785 PF02503 Polyphosphate kinase middle domain NAL94_20785 PF13090 Polyphosphate kinase C-terminal domain 2 NAL94_20785 PF17941 Polyphosphate kinase C-terminal domain 1 NAL94_20785 PF13089 Polyphosphate kinase N-terminal domain NAL94_20790 PF02541 Ppx/GppA phosphatase family NAL94_20795 PF12849 PBP superfamily domain NAL94_20800 PF11808 Phosphate regulon sensor protein PhoR NAL94_20800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_20800 PF00512 His Kinase A (phospho-acceptor) domain NAL94_20800 PF00989 PAS fold NAL94_20805 PF00072 Response regulator receiver domain NAL94_20805 PF00486 Transcriptional regulatory protein, C terminal NAL94_20810 PF04381 Putative exonuclease, RdgC NAL94_20815 PF16325 Peptidase family U32 C-terminal domain NAL94_20815 PF01136 Peptidase family U32 NAL94_20820 PF00037 4Fe-4S binding domain NAL94_20830 PF03411 Penicillin-insensitive murein endopeptidase NAL94_20875 PF02861 Clp amino terminal domain, pathogenicity island component NAL94_20875 PF10431 C-terminal, D2-small domain, of ClpB protein NAL94_20875 PF07724 AAA domain (Cdc48 subfamily) NAL94_20875 PF00004 ATPase family associated with various cellular activities (AAA) NAL94_20875 PF17871 AAA lid domain NAL94_20880 PF02578 Multi-copper polyphenol oxidoreductase laccase NAL94_20885 PF00849 RNA pseudouridylate synthase NAL94_20885 PF01479 S4 domain NAL94_20890 PF13525 Outer membrane lipoprotein NAL94_20895 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_20895 PF01464 Transglycosylase SLT domain NAL94_20900 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein NAL94_20905 PF01817 Chorismate mutase type II NAL94_20905 PF00800 Prephenate dehydratase NAL94_20910 PF01931 Protein of unknown function DUF84 NAL94_20915 PF01371 Trp repressor protein NAL94_20920 PF01464 Transglycosylase SLT domain NAL94_20920 PF14718 Soluble lytic murein transglycosylase L domain NAL94_20925 PF12848 ABC transporter NAL94_20925 PF00005 ABC transporter NAL94_20930 PF07238 PilZ domain NAL94_20935 PF01551 Peptidase family M23 NAL94_20935 PF04225 Opacity-associated protein A LysM-like domain NAL94_20940 PF01817 Chorismate mutase type II NAL94_20940 PF02153 Prephenate dehydrogenase NAL94_20945 PF00793 DAHP synthetase I family NAL94_20950 PF00933 Glycosyl hydrolase family 3 N terminal domain NAL94_20955 PF03702 Anhydro-N-acetylmuramic acid kinase NAL94_20960 PF01380 SIS domain NAL94_20975 PF02554 Carbon starvation protein CstA NAL94_20980 PF07694 5TMR of 5TMR-LYT NAL94_20980 PF06580 Histidine kinase NAL94_20985 PF04397 LytTr DNA-binding domain NAL94_20985 PF00072 Response regulator receiver domain NAL94_20995 PF02401 LytB protein NAL94_21000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NAL94_21005 PF01252 Signal peptidase (SPase) II NAL94_21010 PF08264 Anticodon-binding domain of tRNA NAL94_21010 PF00133 tRNA synthetases class I (I, L, M and V) NAL94_21010 PF06827 Zinc finger found in FPG and IleRS NAL94_21015 PF01687 Riboflavin kinase NAL94_21015 PF06574 FAD synthetase NAL94_21020 PF03023 Lipid II flippase MurJ NAL94_21025 PF01649 Ribosomal protein S20 NAL94_21030 PF01022 Bacterial regulatory protein, arsR family NAL94_21035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_21035 PF03466 LysR substrate binding domain NAL94_21040 PF02690 Na+/Pi-cotransporter NAL94_21050 PF00303 Thymidylate synthase NAL94_21055 PF01790 Prolipoprotein diacylglyceryl transferase NAL94_21060 PF01925 Sulfite exporter TauE/SafE NAL94_21065 PF02896 PEP-utilising enzyme, TIM barrel domain NAL94_21065 PF00391 PEP-utilising enzyme, mobile domain NAL94_21065 PF05524 PEP-utilising enzyme, N-terminal NAL94_21065 PF01590 GAF domain NAL94_21070 PF00293 NUDIX domain NAL94_21075 PF02976 DNA mismatch repair enzyme MutH NAL94_21085 PF00248 Aldo/keto reductase family NAL94_21095 PF00072 Response regulator receiver domain NAL94_21095 PF00158 Sigma-54 interaction domain NAL94_21095 PF02954 Bacterial regulatory protein, Fis family NAL94_21100 PF01336 OB-fold nucleic acid binding domain NAL94_21100 PF00152 tRNA synthetases class II (D, K and N) NAL94_21110 PF02272 DHHA1 domain NAL94_21110 PF17768 RecJ OB domain NAL94_21110 PF01368 DHH family NAL94_21115 PF13098 Thioredoxin-like domain NAL94_21115 PF10411 Disulfide bond isomerase protein N-terminus NAL94_21120 PF02899 Phage integrase, N-terminal SAM-like domain NAL94_21120 PF00589 Phage integrase family NAL94_21125 PF00258 Flavodoxin NAL94_21130 PF05525 Branched-chain amino acid transport protein NAL94_21135 PF05175 Methyltransferase small domain NAL94_21140 PF00270 DEAD/DEAH box helicase NAL94_21140 PF00271 Helicase conserved C-terminal domain NAL94_21145 PF03883 Peroxide stress protein YaaA NAL94_21150 PF01235 Sodium:alanine symporter family NAL94_21165 PF03167 Uracil DNA glycosylase superfamily NAL94_21170 PF01261 Xylose isomerase-like TIM barrel NAL94_21175 PF01228 Glycine radical NAL94_21180 PF03358 NADPH-dependent FMN reductase NAL94_21185 PF14821 Threonine synthase N terminus NAL94_21185 PF00291 Pyridoxal-phosphate dependent enzyme NAL94_21190 PF00288 GHMP kinases N terminal domain NAL94_21190 PF08544 GHMP kinases C terminal NAL94_21195 PF01842 ACT domain NAL94_21195 PF13840 ACT domain NAL94_21195 PF00742 Homoserine dehydrogenase NAL94_21195 PF03447 Homoserine dehydrogenase, NAD binding domain NAL94_21195 PF00696 Amino acid kinase family NAL94_21210 PF03737 Aldolase/RraA NAL94_21220 PF00072 Response regulator receiver domain NAL94_21220 PF00486 Transcriptional regulatory protein, C terminal NAL94_21230 PF00989 PAS fold NAL94_21230 PF01627 Hpt domain NAL94_21230 PF00072 Response regulator receiver domain NAL94_21230 PF00512 His Kinase A (phospho-acceptor) domain NAL94_21230 PF18415 Histidine kinase receptor ArcB trans-membrane domain NAL94_21230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_21235 PF00563 EAL domain NAL94_21235 PF00990 Diguanylate cyclase, GGDEF domain NAL94_21235 PF00360 Phytochrome region NAL94_21235 PF01590 GAF domain NAL94_21240 PF04055 Radical SAM superfamily NAL94_21240 PF16199 Radical_SAM C-terminal domain NAL94_21245 PF00310 Glutamine amidotransferases class-II NAL94_21245 PF04898 Glutamate synthase central domain NAL94_21245 PF01645 Conserved region in glutamate synthase NAL94_21245 PF01493 GXGXG motif NAL94_21250 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NAL94_21250 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_21255 PF00310 Glutamine amidotransferases class-II NAL94_21255 PF04898 Glutamate synthase central domain NAL94_21255 PF01645 Conserved region in glutamate synthase NAL94_21255 PF01493 GXGXG motif NAL94_21260 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NAL94_21260 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_21270 PF01048 Phosphorylase superfamily NAL94_21275 PF17113 Regulatory signalling modulator protein AmpE NAL94_21275 PF03186 CobD/Cbib protein NAL94_21280 PF01497 Periplasmic binding protein NAL94_21285 PF03458 UPF0126 domain NAL94_21290 PF03466 LysR substrate binding domain NAL94_21290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_21295 PF01925 Sulfite exporter TauE/SafE NAL94_21310 PF02142 MGS-like domain NAL94_21310 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NAL94_21310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain NAL94_21315 PF00117 Glutamine amidotransferase class-I NAL94_21315 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain NAL94_21320 PF05173 Dihydrodipicolinate reductase, C-terminus NAL94_21320 PF01113 Dihydrodipicolinate reductase, N-terminus NAL94_21325 PF00293 NUDIX domain NAL94_21330 PF02810 SEC-C motif NAL94_21330 PF07517 SecA DEAD-like domain NAL94_21330 PF01043 SecA preprotein cross-linking domain NAL94_21330 PF07516 SecA Wing and Scaffold domain NAL94_21340 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase NAL94_21345 PF00091 Tubulin/FtsZ family, GTPase domain NAL94_21345 PF12327 FtsZ family, C-terminal domain NAL94_21350 PF02491 SHS2 domain inserted in FTSA NAL94_21355 PF03799 Cell division protein FtsQ NAL94_21355 PF08478 POTRA domain, FtsQ-type NAL94_21360 PF01225 Mur ligase family, catalytic domain NAL94_21360 PF02875 Mur ligase family, glutamate ligase domain NAL94_21360 PF08245 Mur ligase middle domain NAL94_21365 PF04101 Glycosyltransferase family 28 C-terminal domain NAL94_21365 PF03033 Glycosyltransferase family 28 N-terminal domain NAL94_21370 PF01098 Cell cycle protein NAL94_21375 PF02875 Mur ligase family, glutamate ligase domain NAL94_21375 PF08245 Mur ligase middle domain NAL94_21380 PF00953 Glycosyl transferase family 4 NAL94_21380 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 NAL94_21385 PF08245 Mur ligase middle domain NAL94_21385 PF02875 Mur ligase family, glutamate ligase domain NAL94_21385 PF01225 Mur ligase family, catalytic domain NAL94_21390 PF01225 Mur ligase family, catalytic domain NAL94_21390 PF02875 Mur ligase family, glutamate ligase domain NAL94_21390 PF08245 Mur ligase middle domain NAL94_21395 PF00905 Penicillin binding protein transpeptidase domain NAL94_21395 PF03717 Penicillin-binding Protein dimerisation domain NAL94_21400 PF04999 Cell division protein FtsL NAL94_21405 PF01795 MraW methylase family NAL94_21415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NAL94_21420 PF04348 LppC putative lipoprotein NAL94_21425 PF02021 Uncharacterised protein family UPF0102 NAL94_21430 PF13580 SIS domain NAL94_21435 PF04972 BON domain NAL94_21440 PF04386 Stringent starvation protein B NAL94_21445 PF00043 Glutathione S-transferase, C-terminal domain NAL94_21445 PF02798 Glutathione S-transferase, N-terminal domain NAL94_21450 PF02167 Cytochrome C1 family NAL94_21455 PF00033 Cytochrome b/b6/petB NAL94_21455 PF00032 Cytochrome b(C-terminal)/b6/petD NAL94_21460 PF00355 Rieske [2Fe-2S] domain NAL94_21460 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal NAL94_21465 PF00380 Ribosomal protein S9/S16 NAL94_21470 PF00572 Ribosomal protein L13 NAL94_21475 PF03969 AFG1-like ATPase NAL94_21480 PF06295 Protein of unknown function (DUF1043) NAL94_21485 PF00595 PDZ domain NAL94_21490 PF13180 PDZ domain NAL94_21495 PF00521 DNA gyrase/topoisomerase IV, subunit A NAL94_21495 PF03989 DNA gyrase C-terminal domain, beta-propeller NAL94_21500 PF00204 DNA gyrase B NAL94_21500 PF00986 DNA gyrase B subunit, carboxyl terminus NAL94_21500 PF01751 Toprim domain NAL94_21500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_21505 PF05728 Uncharacterised protein family (UPF0227) NAL94_21510 PF00149 Calcineurin-like phosphoesterase NAL94_21515 PF06853 Protein of unknown function (DUF1249) NAL94_21520 PF00293 NUDIX domain NAL94_21525 PF02321 Outer membrane efflux protein NAL94_21530 PF01467 Cytidylyltransferase-like NAL94_21530 PF00294 pfkB family carbohydrate kinase NAL94_21535 PF08335 GlnD PII-uridylyltransferase NAL94_21535 PF03710 Glutamate-ammonia ligase adenylyltransferase NAL94_21540 PF00672 HAMP domain NAL94_21540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_21540 PF02743 Cache domain NAL94_21550 PF01928 CYTH domain NAL94_21555 PF01865 Protein of unknown function DUF47 NAL94_21560 PF01384 Phosphate transporter family NAL94_21565 PF08239 Bacterial SH3 domain NAL94_21580 PF01471 Putative peptidoglycan binding domain NAL94_21580 PF13401 AAA domain NAL94_21585 PF01966 HD domain NAL94_21585 PF12627 Probable RNA and SrmB- binding site of polymerase A NAL94_21585 PF01743 Poly A polymerase head domain NAL94_21590 PF02673 Bacitracin resistance protein BacA NAL94_21595 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) NAL94_21600 PF02152 Dihydroneopterin aldolase NAL94_21605 PF02660 Glycerol-3-phosphate acyltransferase NAL94_21610 PF00561 alpha/beta hydrolase fold NAL94_21615 PF00814 Glycoprotease family NAL94_21620 PF01165 Ribosomal protein S21 NAL94_21625 PF09424 Yqey-like protein NAL94_21630 PF10410 DnaB-helicase binding domain of primase NAL94_21630 PF08275 DNA primase catalytic core, N-terminal domain NAL94_21630 PF01807 CHC2 zinc finger NAL94_21630 PF08278 DNA primase DnaG DnaB-binding NAL94_21635 PF04539 Sigma-70 region 3 NAL94_21635 PF04546 Sigma-70, non-essential region NAL94_21635 PF03979 Sigma-70 factor, region 1.1 NAL94_21635 PF00140 Sigma-70 factor, region 1.2 NAL94_21635 PF04542 Sigma-70 region 2 NAL94_21635 PF04545 Sigma-70, region 4 NAL94_21700 PF14659 Phage integrase, N-terminal SAM-like domain NAL94_21700 PF13356 Arm DNA-binding domain NAL94_21700 PF00589 Phage integrase family NAL94_21705 PF03180 NLPA lipoprotein NAL94_21725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit NAL94_21725 PF02378 Phosphotransferase system, EIIC NAL94_21725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 NAL94_21730 PF08125 Mannitol dehydrogenase C-terminal domain NAL94_21730 PF01232 Mannitol dehydrogenase Rossmann domain NAL94_21735 PF05068 Mannitol repressor NAL94_21740 PF00989 PAS fold NAL94_21740 PF00158 Sigma-54 interaction domain NAL94_21740 PF02954 Bacterial regulatory protein, Fis family NAL94_21745 PF00391 PEP-utilising enzyme, mobile domain NAL94_21745 PF02896 PEP-utilising enzyme, TIM barrel domain NAL94_21745 PF05524 PEP-utilising enzyme, N-terminal NAL94_21750 PF02734 DAK2 domain NAL94_21755 PF02733 Dak1 domain NAL94_21760 PF00465 Iron-containing alcohol dehydrogenase NAL94_21765 PF01380 SIS domain NAL94_21770 PF00455 DeoR C terminal sensor domain NAL94_21770 PF08220 DeoR-like helix-turn-helix domain NAL94_21775 PF00224 Pyruvate kinase, barrel domain NAL94_21775 PF02887 Pyruvate kinase, alpha/beta domain NAL94_21785 PF00990 Diguanylate cyclase, GGDEF domain NAL94_21790 PF10369 Small subunit of acetolactate synthase NAL94_21795 PF00205 Thiamine pyrophosphate enzyme, central domain NAL94_21795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NAL94_21795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NAL94_21800 PF00501 AMP-binding enzyme NAL94_21805 PF03466 LysR substrate binding domain NAL94_21805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_21815 PF01569 PAP2 superfamily NAL94_21825 PF08502 LeuA allosteric (dimerisation) domain NAL94_21825 PF00682 HMGL-like NAL94_21830 PF00180 Isocitrate/isopropylmalate dehydrogenase NAL94_21835 PF00330 Aconitase family (aconitate hydratase) NAL94_21840 PF00694 Aconitase C-terminal domain NAL94_21850 PF00226 DnaJ domain NAL94_21850 PF05099 Tellurite resistance protein TerB NAL94_21855 PF04453 LPS transport system D NAL94_21855 PF03968 OstA-like protein NAL94_21860 PF09312 SurA N-terminal domain NAL94_21865 PF04166 Pyridoxal phosphate biosynthetic protein PdxA NAL94_21870 PF00398 Ribosomal RNA adenine dimethylase NAL94_21875 PF04379 ApaG domain NAL94_21880 PF00149 Calcineurin-like phosphoesterase NAL94_21885 PF00186 Dihydrofolate reductase NAL94_21890 PF12821 Threonine/Serine exporter, ThrE NAL94_21895 PF06738 Putative threonine/serine exporter NAL94_21900 PF01018 GTP1/OBG NAL94_21900 PF01926 50S ribosome-binding GTPase NAL94_21905 PF01016 Ribosomal L27 protein NAL94_21910 PF00829 Ribosomal prokaryotic L21 protein NAL94_21915 PF00348 Polyprenyl synthetase NAL94_21925 PF00056 lactate/malate dehydrogenase, NAD binding domain NAL94_21925 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain NAL94_21930 PF01316 Arginine repressor, DNA binding domain NAL94_21930 PF02863 Arginine repressor, C-terminal domain NAL94_21935 PF16868 NMT1-like family NAL94_21950 PF00724 NADH:flavin oxidoreductase / NADH oxidase family NAL94_21955 PF03466 LysR substrate binding domain NAL94_21955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_21960 PF00005 ABC transporter NAL94_21965 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_21975 PF02441 Flavoprotein NAL94_21980 PF08245 Mur ligase middle domain NAL94_21980 PF01225 Mur ligase family, catalytic domain NAL94_21980 PF02875 Mur ligase family, glutamate ligase domain NAL94_21985 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain NAL94_21990 PF00719 Inorganic pyrophosphatase NAL94_22000 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like NAL94_22005 PF04357 TamB, inner membrane protein subunit of TAM complex NAL94_22010 PF07244 Surface antigen variable number repeat NAL94_22010 PF17243 POTRA domain TamA domain 1 NAL94_22010 PF01103 Surface antigen NAL94_22015 PF01625 Peptide methionine sulfoxide reductase NAL94_22020 PF06526 Protein of unknown function (DUF1107) NAL94_22025 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) NAL94_22030 PF10795 Protein of unknown function (DUF2607) NAL94_22040 PF00005 ABC transporter NAL94_22065 PF03600 Citrate transporter NAL94_22065 PF02080 TrkA-C domain NAL94_22070 PF00009 Elongation factor Tu GTP binding domain NAL94_22075 PF01507 Phosphoadenosine phosphosulfate reductase family NAL94_22080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases NAL94_22080 PF10414 Sirohaem synthase dimerisation region NAL94_22080 PF14824 Sirohaem biosynthesis protein central NAL94_22085 PF00149 Calcineurin-like phosphoesterase NAL94_22085 PF02872 5'-nucleotidase, C-terminal domain NAL94_22095 PF03880 DbpA RNA binding domain NAL94_22095 PF00270 DEAD/DEAH box helicase NAL94_22095 PF00271 Helicase conserved C-terminal domain NAL94_22100 PF13673 Acetyltransferase (GNAT) domain NAL94_22110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase NAL94_22110 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase NAL94_22120 PF01196 Ribosomal protein L17 NAL94_22125 PF01000 RNA polymerase Rpb3/RpoA insert domain NAL94_22125 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain NAL94_22125 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain NAL94_22130 PF00163 Ribosomal protein S4/S9 N-terminal domain NAL94_22130 PF01479 S4 domain NAL94_22135 PF00411 Ribosomal protein S11 NAL94_22140 PF00416 Ribosomal protein S13/S18 NAL94_22145 PF00444 Ribosomal protein L36 NAL94_22150 PF00344 SecY translocase NAL94_22155 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A NAL94_22160 PF00327 Ribosomal protein L30p/L7e NAL94_22165 PF00333 Ribosomal protein S5, N-terminal domain NAL94_22165 PF03719 Ribosomal protein S5, C-terminal domain NAL94_22170 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast NAL94_22175 PF00347 Ribosomal protein L6 NAL94_22180 PF00410 Ribosomal protein S8 NAL94_22185 PF00253 Ribosomal protein S14p/S29e NAL94_22190 PF00281 Ribosomal protein L5 NAL94_22190 PF00673 ribosomal L5P family C-terminus NAL94_22195 PF00467 KOW motif NAL94_22195 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 NAL94_22200 PF00238 Ribosomal protein L14p/L23e NAL94_22205 PF00366 Ribosomal protein S17 NAL94_22210 PF00831 Ribosomal L29 protein NAL94_22215 PF00252 Ribosomal protein L16p/L10e NAL94_22220 PF00189 Ribosomal protein S3, C-terminal domain NAL94_22220 PF07650 KH domain NAL94_22225 PF00237 Ribosomal protein L22p/L17e NAL94_22230 PF00203 Ribosomal protein S19 NAL94_22235 PF00181 Ribosomal Proteins L2, RNA binding domain NAL94_22235 PF03947 Ribosomal Proteins L2, C-terminal domain NAL94_22240 PF00276 Ribosomal protein L23 NAL94_22245 PF00573 Ribosomal protein L4/L1 family NAL94_22250 PF00297 Ribosomal protein L3 NAL94_22255 PF00338 Ribosomal protein S10p/S20e NAL94_22260 PF01197 Ribosomal protein L31 NAL94_22265 PF18319 PriA DNA helicase Cys-rich region (CRR) domain NAL94_22265 PF17764 3′ DNA-binding domain (3′BD) NAL94_22265 PF18074 Primosomal protein N C-terminal domain NAL94_22265 PF00270 DEAD/DEAH box helicase NAL94_22265 PF00271 Helicase conserved C-terminal domain NAL94_22270 PF00356 Bacterial regulatory proteins, lacI family NAL94_22280 PF00227 Proteasome subunit NAL94_22285 PF00004 ATPase family associated with various cellular activities (AAA) NAL94_22285 PF07724 AAA domain (Cdc48 subfamily) NAL94_22290 PF01040 UbiA prenyltransferase family NAL94_22295 PF03737 Aldolase/RraA NAL94_22300 PF06005 Cell division protein ZapB NAL94_22305 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded NAL94_22310 PF00455 DeoR C terminal sensor domain NAL94_22310 PF08220 DeoR-like helix-turn-helix domain NAL94_22335 PF00121 Triosephosphate isomerase NAL94_22340 PF00483 Nucleotidyl transferase NAL94_22345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAL94_22345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAL94_22345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAL94_22360 PF04230 Polysaccharide pyruvyl transferase NAL94_22395 PF00953 Glycosyl transferase family 4 NAL94_22400 PF10996 Beta-Casp domain NAL94_22400 PF00753 Metallo-beta-lactamase superfamily NAL94_22400 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain NAL94_22405 PF02397 Bacterial sugar transferase NAL94_22410 PF00535 Glycosyl transferase family 2 NAL94_22430 PF00535 Glycosyl transferase family 2 NAL94_22450 PF10531 SLBB domain NAL94_22450 PF02563 Polysaccharide biosynthesis/export protein NAL94_22450 PF18412 Outer-membrane lipoprotein Wza C-terminal domain NAL94_22475 PF06082 Exopolysaccharide biosynthesis protein YbjH NAL94_22480 PF01370 NAD dependent epimerase/dehydratase family NAL94_22485 PF03279 Bacterial lipid A biosynthesis acyltransferase NAL94_22490 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) NAL94_22495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NAL94_22500 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) NAL94_22505 PF07836 DmpG-like communication domain NAL94_22505 PF00682 HMGL-like NAL94_22530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family NAL94_22540 PF05523 WxcM-like, C-terminal NAL94_22545 PF00483 Nucleotidyl transferase NAL94_22550 PF16363 GDP-mannose 4,6 dehydratase NAL94_22560 PF01219 Prokaryotic diacylglycerol kinase NAL94_22565 PF01075 Glycosyltransferase family 9 (heptosyltransferase) NAL94_22570 PF00535 Glycosyl transferase family 2 NAL94_22575 PF00535 Glycosyl transferase family 2 NAL94_22580 PF05686 Glycosyl transferase family 90 NAL94_22585 PF01467 Cytidylyltransferase-like NAL94_22590 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain NAL94_22590 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain NAL94_22590 PF06827 Zinc finger found in FPG and IleRS NAL94_22600 PF00471 Ribosomal protein L33 NAL94_22605 PF00830 Ribosomal L28 family NAL94_22610 PF04002 RadC-like JAB domain NAL94_22615 PF17200 Single Cache domain 2 NAL94_22615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain NAL94_22615 PF00672 HAMP domain NAL94_22620 PF04127 DNA / pantothenate metabolism flavoprotein NAL94_22620 PF02441 Flavoprotein NAL94_22625 PF00440 Bacterial regulatory proteins, tetR family NAL94_22630 PF03279 Bacterial lipid A biosynthesis acyltransferase NAL94_22635 PF00156 Phosphoribosyl transferase domain NAL94_22640 PF01138 3' exoribonuclease family, domain 1 NAL94_22640 PF03725 3' exoribonuclease family, domain 2 NAL94_22645 PF08340 Domain of unknown function (DUF1732) NAL94_22645 PF03755 YicC-like family, N-terminal region NAL94_22655 PF00005 ABC transporter NAL94_22655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_22660 PF00005 ABC transporter NAL94_22660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_22665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_22670 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_22670 PF12911 N-terminal TM domain of oligopeptide transport permease C NAL94_22675 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_22680 PF07715 TonB-dependent Receptor Plug Domain NAL94_22680 PF00593 TonB dependent receptor NAL94_22695 PF01618 MotA/TolQ/ExbB proton channel family NAL94_22700 PF02472 Biopolymer transport protein ExbD/TolR NAL94_22715 PF00625 Guanylate kinase NAL94_22720 PF01192 RNA polymerase Rpb6 NAL94_22725 PF13291 ACT domain NAL94_22725 PF04607 Region found in RelA / SpoT proteins NAL94_22725 PF02824 TGS domain NAL94_22730 PF12105 SpoU, rRNA methylase, C-terminal NAL94_22730 PF00588 SpoU rRNA Methylase family NAL94_22735 PF17191 RecG wedge domain NAL94_22735 PF00271 Helicase conserved C-terminal domain NAL94_22735 PF00270 DEAD/DEAH box helicase NAL94_22740 PF00860 Permease family NAL94_22745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_22745 PF00512 His Kinase A (phospho-acceptor) domain NAL94_22745 PF00672 HAMP domain NAL94_22750 PF00072 Response regulator receiver domain NAL94_22750 PF00486 Transcriptional regulatory protein, C terminal NAL94_22760 PF01272 Transcription elongation factor, GreA/GreB, C-term NAL94_22760 PF03449 Transcription elongation factor, N-terminal NAL94_22770 PF17674 HHH domain NAL94_22770 PF16921 Tex protein YqgF-like domain NAL94_22770 PF09371 Tex-like protein N-terminal domain NAL94_22770 PF00575 S1 RNA binding domain NAL94_22780 PF00561 alpha/beta hydrolase fold NAL94_22785 PF00156 Phosphoribosyl transferase domain NAL94_22790 PF01106 NifU-like domain NAL94_22790 PF01521 Iron-sulphur cluster biosynthesis NAL94_22795 PF00293 NUDIX domain NAL94_22800 PF00459 Inositol monophosphatase family NAL94_22805 PF01203 Type II secretion system (T2SS), protein N NAL94_22810 PF04612 Type II secretion system (T2SS), protein M NAL94_22815 PF05134 Type II secretion system (T2SS), protein L NAL94_22815 PF12693 GspL periplasmic domain NAL94_22820 PF03934 Type II secretion system (T2SS), protein K NAL94_22825 PF07963 Prokaryotic N-terminal methylation motif NAL94_22825 PF11612 Type II secretion system (T2SS), protein J NAL94_22830 PF02501 Type II secretion system (T2SS), protein I NAL94_22830 PF07963 Prokaryotic N-terminal methylation motif NAL94_22835 PF12019 Type II transport protein GspH NAL94_22840 PF08334 Type II secretion system (T2SS), protein G NAL94_22840 PF07963 Prokaryotic N-terminal methylation motif NAL94_22845 PF00482 Type II secretion system (T2SS), protein F NAL94_22850 PF00437 Type II/IV secretion system protein NAL94_22855 PF00263 Bacterial type II and III secretion system protein NAL94_22855 PF03958 Bacterial type II/III secretion system short domain NAL94_22860 PF11356 Type II secretion system protein C NAL94_22865 PF01479 S4 domain NAL94_22870 PF01430 Hsp33 protein NAL94_22875 PF01293 Phosphoenolpyruvate carboxykinase NAL94_22885 PF00583 Acetyltransferase (GNAT) family NAL94_22885 PF09500 Putative thioesterase (yiiD_Cterm) NAL94_22890 PF02580 D-Tyr-tRNA(Tyr) deacylase NAL94_22895 PF03631 Virulence factor BrkB NAL94_22905 PF00308 Bacterial dnaA protein NAL94_22905 PF08299 Bacterial dnaA protein helix-turn-helix NAL94_22910 PF00679 Elongation factor G C-terminus NAL94_22910 PF00009 Elongation factor Tu GTP binding domain NAL94_22910 PF03144 Elongation factor Tu domain 2 NAL94_22915 PF03951 Glutamine synthetase, beta-Grasp domain NAL94_22915 PF00120 Glutamine synthetase, catalytic domain NAL94_22925 PF00989 PAS fold NAL94_22925 PF00512 His Kinase A (phospho-acceptor) domain NAL94_22925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NAL94_22930 PF00072 Response regulator receiver domain NAL94_22930 PF00158 Sigma-54 interaction domain NAL94_22930 PF02954 Bacterial regulatory protein, Fis family NAL94_22935 PF03707 Bacterial signalling protein N terminal repeat NAL94_22935 PF00563 EAL domain NAL94_22935 PF00990 Diguanylate cyclase, GGDEF domain NAL94_22940 PF00962 Adenosine/AMP deaminase NAL94_22945 PF06969 HemN C-terminal domain NAL94_22945 PF04055 Radical SAM superfamily NAL94_22950 PF10675 Protein of unknown function (DUF2489) NAL94_22955 PF04220 Der GTPase activator (YihI) NAL94_22965 PF00034 Cytochrome c NAL94_22970 PF01926 50S ribosome-binding GTPase NAL94_22975 PF01612 3'-5' exonuclease NAL94_22975 PF00476 DNA polymerase family A NAL94_22975 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain NAL94_22975 PF01367 5'-3' exonuclease, C-terminal SAM fold NAL94_22980 PF00583 Acetyltransferase (GNAT) family NAL94_22985 PF00490 Delta-aminolevulinic acid dehydratase NAL94_22990 PF01026 TatD related DNase NAL94_22995 PF00902 Sec-independent protein translocase protein (TatC) NAL94_23000 PF02416 mttA/Hcf106 family NAL94_23005 PF02416 mttA/Hcf106 family NAL94_23010 PF03109 ABC1 family NAL94_23015 PF02036 SCP-2 sterol transfer family NAL94_23020 PF01209 ubiE/COQ5 methyltransferase family NAL94_23025 PF02646 RmuC family NAL94_23035 PF00563 EAL domain NAL94_23035 PF03707 Bacterial signalling protein N terminal repeat NAL94_23035 PF00990 Diguanylate cyclase, GGDEF domain NAL94_23040 PF01594 AI-2E family transporter NAL94_23070 PF00781 Diacylglycerol kinase catalytic domain NAL94_23095 PF00158 Sigma-54 interaction domain NAL94_23095 PF02954 Bacterial regulatory protein, Fis family NAL94_23095 PF01590 GAF domain NAL94_23105 PF10625 Universal stress protein B (UspB) NAL94_23110 PF00210 Ferritin-like domain NAL94_23115 PF00582 Universal stress protein family NAL94_23120 PF00892 EamA-like transporter family NAL94_23130 PF04445 Putative SAM-dependent methyltransferase NAL94_23135 PF00563 EAL domain NAL94_23135 PF00990 Diguanylate cyclase, GGDEF domain NAL94_23135 PF08448 PAS fold NAL94_23140 PF01037 Lrp/AsnC ligand binding domain NAL94_23145 PF01432 Peptidase family M3 NAL94_23150 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ NAL94_23155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAL94_23155 PF07992 Pyridine nucleotide-disulphide oxidoreductase NAL94_23160 PF03466 LysR substrate binding domain NAL94_23160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_23165 PF01048 Phosphorylase superfamily NAL94_23170 PF01081 KDPG and KHG aldolase NAL94_23175 PF02447 GntP family permease NAL94_23180 PF01202 Shikimate kinase NAL94_23185 PF00920 Dehydratase family NAL94_23190 PF00893 Small Multidrug Resistance protein NAL94_23195 PF00893 Small Multidrug Resistance protein NAL94_23200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_23200 PF03466 LysR substrate binding domain NAL94_23205 PF00356 Bacterial regulatory proteins, lacI family NAL94_23205 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family NAL94_23210 PF00069 Protein kinase domain NAL94_23240 PF12911 N-terminal TM domain of oligopeptide transport permease C NAL94_23240 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_23245 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_23250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle NAL94_23255 PF00005 ABC transporter NAL94_23255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region NAL94_23260 PF13419 Haloacid dehalogenase-like hydrolase NAL94_23290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III NAL94_23295 PF00580 UvrD/REP helicase N-terminal domain NAL94_23295 PF13361 UvrD-like helicase C-terminal domain NAL94_23300 PF16295 Tetracyclin repressor-like, C-terminal domain NAL94_23300 PF00440 Bacterial regulatory proteins, tetR family NAL94_23305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion NAL94_23310 PF00873 AcrB/AcrD/AcrF family NAL94_23315 PF04380 Membrane fusogenic activity NAL94_23320 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAL94_23320 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain NAL94_23325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_23325 PF03466 LysR substrate binding domain NAL94_23360 PF00132 Bacterial transferase hexapeptide (six repeats) NAL94_23365 PF07369 Protein of unknown function (DUF1488) NAL94_23370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain NAL94_23370 PF01488 Shikimate / quinate 5-dehydrogenase NAL94_23370 PF08501 Shikimate dehydrogenase substrate binding domain NAL94_23375 PF01218 Coproporphyrinogen III oxidase NAL94_23380 PF01300 Telomere recombination NAL94_23385 PF00731 AIR carboxylase NAL94_23390 PF02222 ATP-grasp domain NAL94_23390 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain NAL94_23395 PF01396 Topoisomerase DNA binding C4 zinc finger NAL94_23400 PF04361 Protein of unknown function (DUF494) NAL94_23405 PF17782 DprA winged helix domain NAL94_23405 PF02481 DNA recombination-mediator protein A NAL94_23415 PF01327 Polypeptide deformylase NAL94_23420 PF02911 Formyl transferase, C-terminal domain NAL94_23420 PF00551 Formyl transferase NAL94_23425 PF01189 16S rRNA methyltransferase RsmB/F NAL94_23425 PF01029 NusB family NAL94_23430 PF02080 TrkA-C domain NAL94_23430 PF02254 TrkA-N domain NAL94_23435 PF02386 Cation transport protein NAL94_23445 PF03006 Haemolysin-III related NAL94_23450 PF07070 SpoOM protein NAL94_23460 PF06288 Protein of unknown function (DUF1040) NAL94_23465 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase NAL94_23465 PF12801 4Fe-4S binding domain NAL94_23465 PF13746 4Fe-4S dicluster domain NAL94_23470 PF01636 Phosphotransferase enzyme family NAL94_23475 PF01323 DSBA-like thioredoxin domain NAL94_23480 PF01553 Acyltransferase NAL94_23490 PF01078 Magnesium chelatase, subunit ChlI NAL94_23490 PF13335 Magnesium chelatase, subunit ChlI C-terminal NAL94_23495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain NAL94_23495 PF00205 Thiamine pyrophosphate enzyme, central domain NAL94_23495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain NAL94_23505 PF01063 Amino-transferase class IV NAL94_23510 PF00920 Dehydratase family NAL94_23515 PF00291 Pyridoxal-phosphate dependent enzyme NAL94_23515 PF00585 C-terminal regulatory domain of Threonine dehydratase NAL94_23520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family NAL94_23520 PF03466 LysR substrate binding domain NAL94_23525 PF07690 Major Facilitator Superfamily NAL94_23530 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_23535 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_23540 PF00132 Bacterial transferase hexapeptide (six repeats) NAL94_23540 PF12804 MobA-like NTP transferase domain NAL94_23545 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain NAL94_23545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain NAL94_23550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NAL94_23550 PF02874 ATP synthase alpha/beta family, beta-barrel domain NAL94_23555 PF00231 ATP synthase NAL94_23560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain NAL94_23560 PF00306 ATP synthase alpha/beta chain, C terminal domain NAL94_23560 PF02874 ATP synthase alpha/beta family, beta-barrel domain NAL94_23565 PF00213 ATP synthase delta (OSCP) subunit NAL94_23570 PF00430 ATP synthase B/B' CF(0) NAL94_23575 PF00137 ATP synthase subunit C NAL94_23580 PF00119 ATP synthase A chain NAL94_23585 PF03899 ATP synthase I chain NAL94_23590 PF02195 ParB-like nuclease domain NAL94_23590 PF17762 HTH domain found in ParB protein NAL94_23595 PF13614 AAA domain NAL94_23600 PF02527 rRNA small subunit methyltransferase G NAL94_23605 PF01134 Glucose inhibited division protein A NAL94_23605 PF13932 GidA associated domain NAL94_23610 PF00258 Flavodoxin NAL94_23615 PF01926 50S ribosome-binding GTPase NAL94_23615 PF12631 MnmE helical domain NAL94_23615 PF10396 GTP-binding protein TrmE N-terminus NAL94_23620 PF02096 60Kd inner membrane protein NAL94_23620 PF14849 YidC periplasmic domain NAL94_23625 PF01809 Putative membrane protein insertion efficiency factor NAL94_23630 PF00825 Ribonuclease P NAL94_23635 PF00468 Ribosomal protein L34 NAL94_23640 PF00005 ABC transporter NAL94_23645 PF00528 Binding-protein-dependent transport system inner membrane component NAL94_23650 PF00497 Bacterial extracellular solute-binding proteins, family 3 NAL94_23730 PF13614 AAA domain NAL94_23855 PF03354 Phage Terminase