locus-tag class description FR729_00025 PF13538 UvrD-like helicase C-terminal domain FR729_00025 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain FR729_00025 PF14490 Helix-hairpin-helix containing domain FR729_00040 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FR729_00040 PF11867 Domain of unknown function (DUF3387) FR729_00040 PF18766 SWI2/SNF2 ATPase FR729_00050 PF02463 RecF/RecN/SMC N terminal domain FR729_00060 PF12161 HsdM N-terminal domain FR729_00060 PF02384 N-6 DNA Methylase FR729_00080 PF11798 IMS family HHH motif FR729_00080 PF11799 impB/mucB/samB family C-terminal domain FR729_00080 PF00817 impB/mucB/samB family FR729_00095 PF07804 HipA-like C-terminal domain FR729_00095 PF13657 HipA N-terminal domain FR729_00145 PF07804 HipA-like C-terminal domain FR729_00145 PF13657 HipA N-terminal domain FR729_00155 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) FR729_00190 PF03432 Relaxase/Mobilisation nuclease domain FR729_00190 PF18821 Large polyvalent protein-associated domain 7 FR729_00225 PF00589 Phage integrase family FR729_00230 PF13356 Arm DNA-binding domain FR729_00230 PF14659 Phage integrase, N-terminal SAM-like domain FR729_00230 PF00589 Phage integrase family FR729_00290 PF03979 Sigma-70 factor, region 1.1 FR729_00290 PF04542 Sigma-70 region 2 FR729_00290 PF00140 Sigma-70 factor, region 1.2 FR729_00290 PF04545 Sigma-70, region 4 FR729_00290 PF04546 Sigma-70, non-essential region FR729_00290 PF04539 Sigma-70 region 3 FR729_00295 PF08278 DNA primase DnaG DnaB-binding FR729_00295 PF08275 DNA primase catalytic core, N-terminal domain FR729_00295 PF01807 CHC2 zinc finger FR729_00295 PF10410 DnaB-helicase binding domain of primase FR729_00300 PF09424 Yqey-like protein FR729_00305 PF01165 Ribosomal protein S21 FR729_00310 PF00814 Glycoprotease family FR729_00315 PF00561 alpha/beta hydrolase fold FR729_00320 PF02660 Glycerol-3-phosphate acyltransferase FR729_00325 PF02152 Dihydroneopterin aldolase FR729_00330 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FR729_00335 PF02673 Bacitracin resistance protein BacA FR729_00340 PF01966 HD domain FR729_00340 PF12627 Probable RNA and SrmB- binding site of polymerase A FR729_00340 PF01743 Poly A polymerase head domain FR729_00345 PF01471 Putative peptidoglycan binding domain FR729_00345 PF13401 AAA domain FR729_00360 PF08239 Bacterial SH3 domain FR729_00365 PF01384 Phosphate transporter family FR729_00370 PF01865 Protein of unknown function DUF47 FR729_00375 PF01928 CYTH domain FR729_00385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_00385 PF02743 Cache domain FR729_00385 PF00672 HAMP domain FR729_00390 PF08335 GlnD PII-uridylyltransferase FR729_00390 PF03710 Glutamate-ammonia ligase adenylyltransferase FR729_00395 PF01467 Cytidylyltransferase-like FR729_00395 PF00294 pfkB family carbohydrate kinase FR729_00400 PF02321 Outer membrane efflux protein FR729_00405 PF00293 NUDIX domain FR729_00410 PF06853 Protein of unknown function (DUF1249) FR729_00415 PF00149 Calcineurin-like phosphoesterase FR729_00420 PF05728 Uncharacterised protein family (UPF0227) FR729_00425 PF00204 DNA gyrase B FR729_00425 PF00986 DNA gyrase B subunit, carboxyl terminus FR729_00425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_00425 PF01751 Toprim domain FR729_00430 PF00521 DNA gyrase/topoisomerase IV, subunit A FR729_00430 PF03989 DNA gyrase C-terminal domain, beta-propeller FR729_00435 PF13180 PDZ domain FR729_00440 PF00595 PDZ domain FR729_00445 PF06295 Protein of unknown function (DUF1043) FR729_00455 PF03969 AFG1-like ATPase FR729_00465 PF00572 Ribosomal protein L13 FR729_00470 PF00380 Ribosomal protein S9/S16 FR729_00475 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FR729_00475 PF00355 Rieske [2Fe-2S] domain FR729_00480 PF00033 Cytochrome b/b6/petB FR729_00480 PF00032 Cytochrome b(C-terminal)/b6/petD FR729_00485 PF02167 Cytochrome C1 family FR729_00490 PF02798 Glutathione S-transferase, N-terminal domain FR729_00490 PF00043 Glutathione S-transferase, C-terminal domain FR729_00495 PF04386 Stringent starvation protein B FR729_00500 PF04972 BON domain FR729_00505 PF13580 SIS domain FR729_00510 PF02021 Uncharacterised protein family UPF0102 FR729_00515 PF04348 LppC putative lipoprotein FR729_00520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FR729_00535 PF01795 MraW methylase family FR729_00540 PF04999 Cell division protein FtsL FR729_00545 PF03717 Penicillin-binding Protein dimerisation domain FR729_00545 PF00905 Penicillin binding protein transpeptidase domain FR729_00550 PF08245 Mur ligase middle domain FR729_00550 PF02875 Mur ligase family, glutamate ligase domain FR729_00550 PF01225 Mur ligase family, catalytic domain FR729_00555 PF02875 Mur ligase family, glutamate ligase domain FR729_00555 PF01225 Mur ligase family, catalytic domain FR729_00555 PF08245 Mur ligase middle domain FR729_00560 PF00953 Glycosyl transferase family 4 FR729_00560 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FR729_00565 PF08245 Mur ligase middle domain FR729_00565 PF02875 Mur ligase family, glutamate ligase domain FR729_00570 PF01098 Cell cycle protein FR729_00575 PF03033 Glycosyltransferase family 28 N-terminal domain FR729_00575 PF04101 Glycosyltransferase family 28 C-terminal domain FR729_00580 PF01225 Mur ligase family, catalytic domain FR729_00580 PF08245 Mur ligase middle domain FR729_00580 PF02875 Mur ligase family, glutamate ligase domain FR729_00585 PF08478 POTRA domain, FtsQ-type FR729_00585 PF03799 Cell division protein FtsQ FR729_00590 PF02491 SHS2 domain inserted in FTSA FR729_00595 PF00091 Tubulin/FtsZ family, GTPase domain FR729_00595 PF12327 FtsZ family, C-terminal domain FR729_00600 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FR729_00610 PF07516 SecA Wing and Scaffold domain FR729_00610 PF01043 SecA preprotein cross-linking domain FR729_00610 PF07517 SecA DEAD-like domain FR729_00610 PF02810 SEC-C motif FR729_00615 PF00293 NUDIX domain FR729_00620 PF05173 Dihydrodipicolinate reductase, C-terminus FR729_00620 PF01113 Dihydrodipicolinate reductase, N-terminus FR729_00625 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FR729_00625 PF00117 Glutamine amidotransferase class-I FR729_00630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FR729_00630 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FR729_00630 PF02142 MGS-like domain FR729_00650 PF01925 Sulfite exporter TauE/SafE FR729_00655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_00655 PF03466 LysR substrate binding domain FR729_00660 PF03458 UPF0126 domain FR729_00665 PF01497 Periplasmic binding protein FR729_00670 PF03186 CobD/Cbib protein FR729_00670 PF17113 Regulatory signalling modulator protein AmpE FR729_00675 PF01048 Phosphorylase superfamily FR729_00685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FR729_00685 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_00690 PF01493 GXGXG motif FR729_00690 PF00310 Glutamine amidotransferases class-II FR729_00690 PF01645 Conserved region in glutamate synthase FR729_00690 PF04898 Glutamate synthase central domain FR729_00695 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FR729_00695 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_00700 PF00310 Glutamine amidotransferases class-II FR729_00700 PF04898 Glutamate synthase central domain FR729_00700 PF01493 GXGXG motif FR729_00700 PF01645 Conserved region in glutamate synthase FR729_00705 PF16199 Radical_SAM C-terminal domain FR729_00705 PF04055 Radical SAM superfamily FR729_00710 PF01590 GAF domain FR729_00710 PF00990 Diguanylate cyclase, GGDEF domain FR729_00710 PF00563 EAL domain FR729_00710 PF00360 Phytochrome region FR729_00715 PF18415 Histidine kinase receptor ArcB trans-membrane domain FR729_00715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_00715 PF00989 PAS fold FR729_00715 PF00072 Response regulator receiver domain FR729_00715 PF01627 Hpt domain FR729_00715 PF00512 His Kinase A (phospho-acceptor) domain FR729_00725 PF00072 Response regulator receiver domain FR729_00725 PF00486 Transcriptional regulatory protein, C terminal FR729_00740 PF03737 Aldolase/RraA FR729_00755 PF00696 Amino acid kinase family FR729_00755 PF01842 ACT domain FR729_00755 PF03447 Homoserine dehydrogenase, NAD binding domain FR729_00755 PF13840 ACT domain FR729_00755 PF00742 Homoserine dehydrogenase FR729_00760 PF00288 GHMP kinases N terminal domain FR729_00760 PF08544 GHMP kinases C terminal FR729_00765 PF14821 Threonine synthase N terminus FR729_00765 PF00291 Pyridoxal-phosphate dependent enzyme FR729_00775 PF01228 Glycine radical FR729_00780 PF01261 Xylose isomerase-like TIM barrel FR729_00790 PF03167 Uracil DNA glycosylase superfamily FR729_00805 PF01235 Sodium:alanine symporter family FR729_00810 PF03883 Peroxide stress protein YaaA FR729_00815 PF00271 Helicase conserved C-terminal domain FR729_00815 PF00270 DEAD/DEAH box helicase FR729_00820 PF05175 Methyltransferase small domain FR729_00825 PF05525 Branched-chain amino acid transport protein FR729_00830 PF00258 Flavodoxin FR729_00835 PF02899 Phage integrase, N-terminal SAM-like domain FR729_00835 PF00589 Phage integrase family FR729_00840 PF13098 Thioredoxin-like domain FR729_00840 PF10411 Disulfide bond isomerase protein N-terminus FR729_00845 PF01368 DHH family FR729_00845 PF02272 DHHA1 domain FR729_00845 PF17768 RecJ OB domain FR729_00855 PF01336 OB-fold nucleic acid binding domain FR729_00855 PF00152 tRNA synthetases class II (D, K and N) FR729_00860 PF02954 Bacterial regulatory protein, Fis family FR729_00860 PF00158 Sigma-54 interaction domain FR729_00860 PF00072 Response regulator receiver domain FR729_00870 PF00248 Aldo/keto reductase family FR729_00880 PF02976 DNA mismatch repair enzyme MutH FR729_00885 PF00293 NUDIX domain FR729_00890 PF01590 GAF domain FR729_00890 PF05524 PEP-utilising enzyme, N-terminal FR729_00890 PF00391 PEP-utilising enzyme, mobile domain FR729_00890 PF02896 PEP-utilising enzyme, TIM barrel domain FR729_00895 PF01925 Sulfite exporter TauE/SafE FR729_00905 PF00303 Thymidylate synthase FR729_00915 PF02690 Na+/Pi-cotransporter FR729_00920 PF03466 LysR substrate binding domain FR729_00920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_00925 PF01022 Bacterial regulatory protein, arsR family FR729_00930 PF01649 Ribosomal protein S20 FR729_00935 PF03023 Lipid II flippase MurJ FR729_00940 PF01687 Riboflavin kinase FR729_00940 PF06574 FAD synthetase FR729_00945 PF00133 tRNA synthetases class I (I, L, M and V) FR729_00945 PF06827 Zinc finger found in FPG and IleRS FR729_00945 PF08264 Anticodon-binding domain of tRNA FR729_00950 PF01252 Signal peptidase (SPase) II FR729_00955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FR729_00960 PF02401 LytB protein FR729_00970 PF00072 Response regulator receiver domain FR729_00970 PF04397 LytTr DNA-binding domain FR729_00975 PF07694 5TMR of 5TMR-LYT FR729_00975 PF06580 Histidine kinase FR729_00980 PF02554 Carbon starvation protein CstA FR729_00995 PF01380 SIS domain FR729_01000 PF03702 Anhydro-N-acetylmuramic acid kinase FR729_01005 PF00933 Glycosyl hydrolase family 3 N terminal domain FR729_01010 PF00793 DAHP synthetase I family FR729_01015 PF02153 Prephenate dehydrogenase FR729_01015 PF01817 Chorismate mutase type II FR729_01020 PF04225 Opacity-associated protein A LysM-like domain FR729_01020 PF01551 Peptidase family M23 FR729_01025 PF07238 PilZ domain FR729_01030 PF00005 ABC transporter FR729_01030 PF12848 ABC transporter FR729_01035 PF01464 Transglycosylase SLT domain FR729_01035 PF14718 Soluble lytic murein transglycosylase L domain FR729_01040 PF01371 Trp repressor protein FR729_01045 PF01931 Protein of unknown function DUF84 FR729_01050 PF01817 Chorismate mutase type II FR729_01050 PF00800 Prephenate dehydratase FR729_01055 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FR729_01060 PF01464 Transglycosylase SLT domain FR729_01060 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_01065 PF13525 Outer membrane lipoprotein FR729_01070 PF00849 RNA pseudouridylate synthase FR729_01070 PF01479 S4 domain FR729_01080 PF10431 C-terminal, D2-small domain, of ClpB protein FR729_01080 PF00004 ATPase family associated with various cellular activities (AAA) FR729_01080 PF02861 Clp amino terminal domain, pathogenicity island component FR729_01080 PF17871 AAA lid domain FR729_01080 PF07724 AAA domain (Cdc48 subfamily) FR729_01130 PF03411 Penicillin-insensitive murein endopeptidase FR729_01140 PF00037 4Fe-4S binding domain FR729_01150 PF04381 Putative exonuclease, RdgC FR729_01160 PF00072 Response regulator receiver domain FR729_01160 PF00486 Transcriptional regulatory protein, C terminal FR729_01165 PF00512 His Kinase A (phospho-acceptor) domain FR729_01165 PF11808 Phosphate regulon sensor protein PhoR FR729_01165 PF00989 PAS fold FR729_01165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_01170 PF12849 PBP superfamily domain FR729_01175 PF02541 Ppx/GppA phosphatase family FR729_01180 PF13090 Polyphosphate kinase C-terminal domain 2 FR729_01180 PF02503 Polyphosphate kinase middle domain FR729_01180 PF13089 Polyphosphate kinase N-terminal domain FR729_01180 PF17941 Polyphosphate kinase C-terminal domain 1 FR729_01185 PF00528 Binding-protein-dependent transport system inner membrane component FR729_01190 PF00528 Binding-protein-dependent transport system inner membrane component FR729_01195 PF00005 ABC transporter FR729_01200 PF01895 PhoU domain FR729_01205 PF03976 Polyphosphate kinase 2 (PPK2) FR729_01210 PF03932 CutC family FR729_01215 PF00578 AhpC/TSA family FR729_01215 PF10417 C-terminal domain of 1-Cys peroxiredoxin FR729_01220 PF03466 LysR substrate binding domain FR729_01220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_01225 PF01274 Malate synthase FR729_01230 PF00463 Isocitrate lyase family FR729_01235 PF00571 CBS domain FR729_01245 PF02547 Queuosine biosynthesis protein FR729_01250 PF01702 Queuine tRNA-ribosyltransferase FR729_01255 PF02699 Preprotein translocase subunit FR729_01260 PF07549 SecD/SecF GG Motif FR729_01260 PF13721 SecD export protein N-terminal TM region FR729_01260 PF02355 Protein export membrane protein FR729_01265 PF07549 SecD/SecF GG Motif FR729_01265 PF02355 Protein export membrane protein FR729_01270 PF00459 Inositol monophosphatase family FR729_01275 PF00588 SpoU rRNA Methylase family FR729_01280 PF02082 Transcriptional regulator FR729_01285 PF00266 Aminotransferase class-V FR729_01290 PF01592 NifU-like N terminal domain FR729_01295 PF01521 Iron-sulphur cluster biosynthesis FR729_01300 PF00226 DnaJ domain FR729_01300 PF07743 HSCB C-terminal oligomerisation domain FR729_01305 PF00012 Hsp70 protein FR729_01310 PF00111 2Fe-2S iron-sulfur cluster binding domain FR729_01315 PF04384 Iron-sulphur cluster assembly FR729_01320 PF00883 Cytosol aminopeptidase family, catalytic domain FR729_01320 PF12404 Peptidase FR729_01325 PF00334 Nucleoside diphosphate kinase FR729_01330 PF04055 Radical SAM superfamily FR729_01335 PF13464 Domain of unknown function (DUF4115) FR729_01340 PF04551 GcpE protein FR729_01345 PF13393 Histidyl-tRNA synthetase FR729_01345 PF03129 Anticodon binding domain FR729_01350 PF09976 Tetratricopeptide repeat-like domain FR729_01355 PF13360 PQQ-like domain FR729_01360 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FR729_01360 PF01926 50S ribosome-binding GTPase FR729_01375 PF13742 OB-fold nucleic acid binding domain FR729_01375 PF02601 Exonuclease VII, large subunit FR729_01380 PF00571 CBS domain FR729_01380 PF00478 IMP dehydrogenase / GMP reductase domain FR729_01385 PF00958 GMP synthase C terminal domain FR729_01385 PF02540 NAD synthase FR729_01385 PF00117 Glutamine amidotransferase class-I FR729_01390 PF03553 Na+/H+ antiporter family FR729_01395 PF06483 Chitinase C FR729_01395 PF00704 Glycosyl hydrolases family 18 FR729_01400 PF01184 GPR1/FUN34/yaaH family FR729_01405 PF01235 Sodium:alanine symporter family FR729_01410 PF01266 FAD dependent oxidoreductase FR729_01420 PF01053 Cys/Met metabolism PLP-dependent enzyme FR729_01425 PF00202 Aminotransferase class-III FR729_01445 PF00795 Carbon-nitrogen hydrolase FR729_01445 PF00583 Acetyltransferase (GNAT) family FR729_01450 PF03466 LysR substrate binding domain FR729_01450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_01475 PF01668 SmpB protein FR729_01480 PF03364 Polyketide cyclase / dehydrase and lipid transport FR729_01485 PF03658 RnfH family Ubiquitin FR729_01490 PF04355 SmpA / OmlA family FR729_01500 PF02463 RecF/RecN/SMC N terminal domain FR729_01510 PF01513 ATP-NAD kinase FR729_01515 PF01025 GrpE FR729_01520 PF00375 Sodium:dicarboxylate symporter family FR729_01525 PF00012 Hsp70 protein FR729_01530 PF01556 DnaJ C terminal domain FR729_01530 PF00226 DnaJ domain FR729_01530 PF00684 DnaJ central domain FR729_01560 PF03806 AbgT putative transporter family FR729_01565 PF14437 MafB19-like deaminase FR729_01575 PF01464 Transglycosylase SLT domain FR729_01575 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_01580 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FR729_01580 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FR729_01580 PF02769 AIR synthase related protein, C-terminal domain FR729_01610 PF01546 Peptidase family M20/M25/M40 FR729_01610 PF07687 Peptidase dimerisation domain FR729_01615 PF00860 Permease family FR729_01620 PF00156 Phosphoribosyl transferase domain FR729_01630 PF07417 Sigma factor-binding transcriptional regulator Crl FR729_01635 PF01472 PUA domain FR729_01635 PF00696 Amino acid kinase family FR729_01640 PF00171 Aldehyde dehydrogenase family FR729_01645 PF03477 ATP cone domain FR729_01650 PF01872 RibD C-terminal domain FR729_01650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FR729_01655 PF00677 Lumazine binding domain FR729_01660 PF00925 GTP cyclohydrolase II FR729_01660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FR729_01665 PF00885 6,7-dimethyl-8-ribityllumazine synthase FR729_01670 PF01029 NusB family FR729_01675 PF00586 AIR synthase related protein, N-terminal domain FR729_01675 PF02769 AIR synthase related protein, C-terminal domain FR729_01680 PF04608 Phosphatidylglycerophosphatase A FR729_01685 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FR729_01685 PF02779 Transketolase, pyrimidine binding domain FR729_01685 PF02780 Transketolase, C-terminal domain FR729_01690 PF00348 Polyprenyl synthetase FR729_01695 PF02609 Exonuclease VII small subunit FR729_01700 PF01618 MotA/TolQ/ExbB proton channel family FR729_01705 PF13677 Membrane MotB of proton-channel complex MotA/MotB FR729_01705 PF00691 OmpA family FR729_01710 PF02568 Thiamine biosynthesis protein (ThiI) FR729_01710 PF02926 THUMP domain FR729_01715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_01715 PF03466 LysR substrate binding domain FR729_01725 PF04241 Protein of unknown function (DUF423) FR729_01730 PF01728 FtsJ-like methyltransferase FR729_01730 PF18125 RlmM ferredoxin-like domain FR729_01735 PF01367 5'-3' exonuclease, C-terminal SAM fold FR729_01735 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FR729_01740 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases FR729_01740 PF03641 Possible lysine decarboxylase FR729_01740 PF11892 Domain of unknown function (DUF3412) FR729_01745 PF00990 Diguanylate cyclase, GGDEF domain FR729_01745 PF00072 Response regulator receiver domain FR729_01755 PF14489 QueF-like protein FR729_01755 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FR729_01760 PF07348 Syd protein (SUKH-2) FR729_01765 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) FR729_01770 PF03180 NLPA lipoprotein FR729_01775 PF00528 Binding-protein-dependent transport system inner membrane component FR729_01780 PF09383 NIL domain FR729_01780 PF00005 ABC transporter FR729_01790 PF00356 Bacterial regulatory proteins, lacI family FR729_01795 PF00367 phosphotransferase system, EIIB FR729_01795 PF02378 Phosphotransferase system, EIIC FR729_01800 PF16657 Maltogenic Amylase, C-terminal domain FR729_01800 PF00128 Alpha amylase, catalytic domain FR729_01815 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FR729_01815 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) FR729_01820 PF00464 Serine hydroxymethyltransferase FR729_01825 PF04055 Radical SAM superfamily FR729_01825 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family FR729_01830 PF03099 Biotin/lipoate A/B protein ligase family FR729_01835 PF04359 Protein of unknown function (DUF493) FR729_01840 PF07943 Penicillin-binding protein 5, C-terminal domain FR729_01840 PF00768 D-alanyl-D-alanine carboxypeptidase FR729_01845 PF05036 Sporulation related domain FR729_01845 PF03330 Lytic transglycolase FR729_01850 PF01098 Cell cycle protein FR729_01855 PF03717 Penicillin-binding Protein dimerisation domain FR729_01855 PF00905 Penicillin binding protein transpeptidase domain FR729_01860 PF02590 Predicted SPOUT methyltransferase FR729_01870 PF06144 DNA polymerase III, delta subunit FR729_01870 PF14840 Processivity clamp loader gamma complex DNA pol III C-term FR729_01875 PF04390 Lipopolysaccharide-assembly FR729_01880 PF00133 tRNA synthetases class I (I, L, M and V) FR729_01880 PF13603 Leucyl-tRNA synthetase, Domain 2 FR729_01880 PF08264 Anticodon-binding domain of tRNA FR729_01885 PF07295 Zinc-ribbon containing domain FR729_01890 PF00795 Carbon-nitrogen hydrolase FR729_01895 PF03471 Transporter associated domain FR729_01895 PF00571 CBS domain FR729_01900 PF02130 Uncharacterized protein family UPF0054 FR729_01905 PF02562 PhoH-like protein FR729_01910 PF00919 Uncharacterized protein family UPF0004 FR729_01910 PF04055 Radical SAM superfamily FR729_01910 PF01938 TRAM domain FR729_01920 PF01494 FAD binding domain FR729_02030 PF06071 Protein of unknown function (DUF933) FR729_02030 PF01926 50S ribosome-binding GTPase FR729_02035 PF01195 Peptidyl-tRNA hydrolase FR729_02040 PF14572 Phosphoribosyl synthetase-associated domain FR729_02040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FR729_02045 PF08544 GHMP kinases C terminal FR729_02045 PF00288 GHMP kinases N terminal domain FR729_02050 PF03550 Outer membrane lipoprotein LolB FR729_02055 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FR729_02055 PF01488 Shikimate / quinate 5-dehydrogenase FR729_02055 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FR729_02060 PF03462 PCRF domain FR729_02060 PF00472 RF-1 domain FR729_02065 PF17827 PrmC N-terminal domain FR729_02065 PF13847 Methyltransferase domain FR729_02070 PF04247 Invasion gene expression up-regulator, SirB FR729_02075 PF13369 Transglutaminase-like superfamily FR729_02080 PF00793 DAHP synthetase I family FR729_02085 PF00149 Calcineurin-like phosphoesterase FR729_02085 PF02872 5'-nucleotidase, C-terminal domain FR729_02090 PF04073 Aminoacyl-tRNA editing domain FR729_02095 PF00849 RNA pseudouridylate synthase FR729_02095 PF01479 S4 domain FR729_02100 PF01713 Smr domain FR729_02125 PF02838 Glycosyl hydrolase family 20, domain 2 FR729_02125 PF00728 Glycosyl hydrolase family 20, catalytic domain FR729_02125 PF03173 Putative carbohydrate binding domain FR729_02125 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain FR729_02140 PF00403 Heavy-metal-associated domain FR729_02155 PF13609 Gram-negative porin FR729_02160 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FR729_02165 PF00749 tRNA synthetases class I (E and Q), catalytic domain FR729_02170 PF00691 OmpA family FR729_02170 PF01389 OmpA-like transmembrane domain FR729_02215 PF01584 CheW-like domain FR729_02215 PF00072 Response regulator receiver domain FR729_02220 PF03705 CheR methyltransferase, all-alpha domain FR729_02220 PF01739 CheR methyltransferase, SAM binding domain FR729_02225 PF00460 Flagella basal body rod protein FR729_02230 PF00460 Flagella basal body rod protein FR729_02230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_02235 PF03963 Flagellar hook capping protein - N-terminal region FR729_02235 PF13861 FlgD Tudor-like domain FR729_02235 PF13860 FlgD Ig-like domain FR729_02240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_02240 PF00460 Flagella basal body rod protein FR729_02240 PF07559 Flagellar basal body protein FlaE FR729_02245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_02245 PF00460 Flagella basal body rod protein FR729_02250 PF00460 Flagella basal body rod protein FR729_02250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_02255 PF02107 Flagellar L-ring protein FR729_02260 PF02119 Flagellar P-ring protein FR729_02265 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FR729_02265 PF10135 Rod binding protein FR729_02270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_02270 PF07196 Flagellin hook IN motif FR729_02275 PF00669 Bacterial flagellin N-terminal helical region FR729_02280 PF00700 Bacterial flagellin C-terminal helical region FR729_02280 PF00669 Bacterial flagellin N-terminal helical region FR729_02280 PF07196 Flagellin hook IN motif FR729_02290 PF07196 Flagellin hook IN motif FR729_02290 PF00669 Bacterial flagellin N-terminal helical region FR729_02290 PF00700 Bacterial flagellin C-terminal helical region FR729_02295 PF07196 Flagellin hook IN motif FR729_02295 PF00669 Bacterial flagellin N-terminal helical region FR729_02295 PF00700 Bacterial flagellin C-terminal helical region FR729_02300 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FR729_02305 PF02896 PEP-utilising enzyme, TIM barrel domain FR729_02305 PF00391 PEP-utilising enzyme, mobile domain FR729_02305 PF05524 PEP-utilising enzyme, N-terminal FR729_02310 PF00381 PTS HPr component phosphorylation site FR729_02320 PF00291 Pyridoxal-phosphate dependent enzyme FR729_02330 PF04354 ZipA, C-terminal FtsZ-binding domain FR729_02335 PF12826 Helix-hairpin-helix motif FR729_02335 PF03120 NAD-dependent DNA ligase OB-fold domain FR729_02335 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FR729_02335 PF00533 BRCA1 C Terminus (BRCT) domain FR729_02335 PF01653 NAD-dependent DNA ligase adenylation domain FR729_02340 PF03573 outer membrane porin, OprD family FR729_02360 PF01145 SPFH domain / Band 7 family FR729_02360 PF16200 C-terminal region of band_7 FR729_02365 PF00085 Thioredoxin FR729_02375 PF00106 short chain dehydrogenase FR729_02380 PF01370 NAD dependent epimerase/dehydratase family FR729_02380 PF08338 Domain of unknown function (DUF1731) FR729_02385 PF07556 Protein of unknown function (DUF1538) FR729_02390 PF07556 Protein of unknown function (DUF1538) FR729_02410 PF12850 Calcineurin-like phosphoesterase superfamily domain FR729_02425 PF17323 Trans-membrane regulatory protein ToxS FR729_02430 PF00486 Transcriptional regulatory protein, C terminal FR729_02435 PF00183 Hsp90 protein FR729_02435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_02440 PF05191 Adenylate kinase, active site lid FR729_02445 PF00762 Ferrochelatase FR729_02450 PF00854 POT family FR729_02455 PF02357 Transcription termination factor nusG FR729_02460 PF13537 Glutamine amidotransferase domain FR729_02460 PF00733 Asparagine synthase FR729_02465 PF02254 TrkA-N domain FR729_02465 PF00999 Sodium/hydrogen exchanger family FR729_02470 PF01047 MarR family FR729_02470 PF00480 ROK family FR729_02475 PF01979 Amidohydrolase family FR729_02485 PF00367 phosphotransferase system, EIIB FR729_02485 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FR729_02485 PF02378 Phosphotransferase system, EIIC FR729_02490 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FR729_02490 PF00749 tRNA synthetases class I (E and Q), catalytic domain FR729_02495 PF01475 Ferric uptake regulator family FR729_02505 PF00258 Flavodoxin FR729_02515 PF12697 Alpha/beta hydrolase family FR729_02520 PF17206 SeqA protein N-terminal domain FR729_02520 PF03925 SeqA protein C-terminal domain FR729_02525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FR729_02525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FR729_02525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FR729_02525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FR729_02535 PF01784 NIF3 (NGG1p interacting factor 3) FR729_02540 PF00285 Citrate synthase, C-terminal domain FR729_02545 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FR729_02550 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FR729_02555 PF00890 FAD binding domain FR729_02555 PF02910 Fumarate reductase flavoprotein C-term FR729_02560 PF13085 2Fe-2S iron-sulfur cluster binding domain FR729_02565 PF16078 2-oxoglutarate dehydrogenase N-terminus FR729_02565 PF00676 Dehydrogenase E1 component FR729_02565 PF16870 2-oxoglutarate dehydrogenase C-terminal FR729_02565 PF02779 Transketolase, pyrimidine binding domain FR729_02570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FR729_02570 PF00364 Biotin-requiring enzyme FR729_02570 PF02817 e3 binding domain FR729_02575 PF08442 ATP-grasp domain FR729_02575 PF00549 CoA-ligase FR729_02580 PF00549 CoA-ligase FR729_02580 PF02629 CoA binding domain FR729_02585 PF00950 ABC 3 transport family FR729_02590 PF00005 ABC transporter FR729_02595 PF01297 Zinc-uptake complex component A periplasmic FR729_02600 PF02311 AraC-like ligand binding domain FR729_02600 PF12833 Helix-turn-helix domain FR729_02605 PF04023 FeoA domain FR729_02610 PF07664 Ferrous iron transport protein B C terminus FR729_02610 PF17910 FeoB cytosolic helical domain FR729_02610 PF02421 Ferrous iron transport protein B FR729_02610 PF07670 Nucleoside recognition FR729_02625 PF00750 tRNA synthetases class I (R) FR729_02625 PF05746 DALR anticodon binding domain FR729_02625 PF03485 Arginyl tRNA synthetase N terminal domain FR729_02635 PF06185 YecM protein FR729_02645 PF00089 Trypsin FR729_02650 PF00551 Formyl transferase FR729_02650 PF01842 ACT domain FR729_02655 PF04851 Type III restriction enzyme, res subunit FR729_02655 PF13307 Helicase C-terminal domain FR729_02660 PF00814 Glycoprotease family FR729_02670 PF03843 Outer membrane lipoprotein Slp family FR729_02675 PF00561 alpha/beta hydrolase fold FR729_02680 PF13193 AMP-binding enzyme C-terminal domain FR729_02680 PF00501 AMP-binding enzyme FR729_02685 PF01612 3'-5' exonuclease FR729_02685 PF00570 HRDC domain FR729_02690 PF03776 Septum formation topological specificity factor MinE FR729_02695 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FR729_02700 PF03775 Septum formation inhibitor MinC, C-terminal domain FR729_02700 PF05209 Septum formation inhibitor MinC, N-terminal domain FR729_02705 PF05166 YcgL domain FR729_02710 PF13406 Transglycosylase SLT domain FR729_02715 PF03466 LysR substrate binding domain FR729_02715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_02720 PF01773 Na+ dependent nucleoside transporter N-terminus FR729_02720 PF07662 Na+ dependent nucleoside transporter C-terminus FR729_02720 PF07670 Nucleoside recognition FR729_02725 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FR729_02725 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FR729_02735 PF01209 ubiE/COQ5 methyltransferase family FR729_02740 PF02801 Beta-ketoacyl synthase, C-terminal domain FR729_02740 PF00109 Beta-ketoacyl synthase, N-terminal domain FR729_02750 PF07977 FabA-like domain FR729_02755 PF00109 Beta-ketoacyl synthase, N-terminal domain FR729_02755 PF02801 Beta-ketoacyl synthase, C-terminal domain FR729_02780 PF00221 Aromatic amino acid lyase FR729_02785 PF00535 Glycosyl transferase family 2 FR729_02790 PF07977 FabA-like domain FR729_02805 PF00550 Phosphopantetheine attachment site FR729_02810 PF00550 Phosphopantetheine attachment site FR729_02835 PF04820 Tryptophan halogenase FR729_02845 PF00270 DEAD/DEAH box helicase FR729_02845 PF00271 Helicase conserved C-terminal domain FR729_02850 PF02254 TrkA-N domain FR729_02850 PF02080 TrkA-C domain FR729_02855 PF02386 Cation transport protein FR729_02870 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FR729_02875 PF03480 Bacterial extracellular solute-binding protein, family 7 FR729_02880 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component FR729_02885 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FR729_02895 PF02954 Bacterial regulatory protein, Fis family FR729_02895 PF00072 Response regulator receiver domain FR729_02895 PF00158 Sigma-54 interaction domain FR729_02900 PF02743 Cache domain FR729_02900 PF00512 His Kinase A (phospho-acceptor) domain FR729_02900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_02910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FR729_02910 PF05697 Bacterial trigger factor protein (TF) FR729_02910 PF05698 Bacterial trigger factor protein (TF) C-terminus FR729_02915 PF00574 Clp protease FR729_02920 PF06689 ClpX C4-type zinc finger FR729_02920 PF10431 C-terminal, D2-small domain, of ClpB protein FR729_02920 PF07724 AAA domain (Cdc48 subfamily) FR729_02925 PF00004 ATPase family associated with various cellular activities (AAA) FR729_02925 PF05362 Lon protease (S16) C-terminal proteolytic domain FR729_02925 PF02190 ATP-dependent protease La (LON) substrate-binding domain FR729_02930 PF00216 Bacterial DNA-binding protein FR729_02935 PF13145 PPIC-type PPIASE domain FR729_02955 PF01966 HD domain FR729_02955 PF13286 Phosphohydrolase-associated domain FR729_02965 PF00155 Aminotransferase class I and II FR729_02970 PF00425 chorismate binding enzyme FR729_02975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FR729_02975 PF16582 Middle domain of thiamine pyrophosphate FR729_02975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FR729_02980 PF12697 Alpha/beta hydrolase family FR729_02985 PF00378 Enoyl-CoA hydratase/isomerase FR729_02990 PF13378 Enolase C-terminal domain-like FR729_02995 PF00501 AMP-binding enzyme FR729_02995 PF13193 AMP-binding enzyme C-terminal domain FR729_03005 PF03601 Conserved hypothetical protein 698 FR729_03010 PF07690 Major Facilitator Superfamily FR729_03055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_03055 PF00529 HlyD membrane-fusion protein of T1SS FR729_03060 PF00873 AcrB/AcrD/AcrF family FR729_03080 PF00291 Pyridoxal-phosphate dependent enzyme FR729_03085 PF01037 Lrp/AsnC ligand binding domain FR729_03085 PF13404 AsnC-type helix-turn-helix domain FR729_03100 PF09619 Type III secretion system lipoprotein chaperone (YscW) FR729_03105 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FR729_03115 PF08448 PAS fold FR729_03115 PF00990 Diguanylate cyclase, GGDEF domain FR729_03125 PF00588 SpoU rRNA Methylase family FR729_03125 PF08032 RNA 2'-O ribose methyltransferase substrate binding FR729_03130 PF00478 IMP dehydrogenase / GMP reductase domain FR729_03130 PF00571 CBS domain FR729_03135 PF00403 Heavy-metal-associated domain FR729_03140 PF01048 Phosphorylase superfamily FR729_03150 PF00672 HAMP domain FR729_03150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_03155 PF01230 HIT domain FR729_03170 PF13036 Peptidoglycan-synthase activator LpoB FR729_03170 PF08139 Prokaryotic membrane lipoprotein lipid attachment site FR729_03180 PF05728 Uncharacterised protein family (UPF0227) FR729_03185 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_03200 PF02559 CarD-like/TRCF domain FR729_03200 PF17757 UvrB interaction domain FR729_03200 PF00271 Helicase conserved C-terminal domain FR729_03200 PF03461 TRCF domain FR729_03200 PF00270 DEAD/DEAH box helicase FR729_03210 PF02687 FtsX-like permease family FR729_03210 PF12704 MacB-like periplasmic core domain FR729_03215 PF00005 ABC transporter FR729_03220 PF02687 FtsX-like permease family FR729_03220 PF12704 MacB-like periplasmic core domain FR729_03230 PF03772 Competence protein FR729_03230 PF13567 Domain of unknown function (DUF4131) FR729_03230 PF00753 Metallo-beta-lactamase superfamily FR729_03235 PF00664 ABC transporter transmembrane region FR729_03235 PF00005 ABC transporter FR729_03240 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FR729_03245 PF03966 Trm112p-like protein FR729_03250 PF02348 Cytidylyltransferase FR729_03255 PF04293 SpoVR like protein FR729_03260 PF04285 Protein of unknown function (DUF444) FR729_03265 PF06798 PrkA serine protein kinase C-terminal domain FR729_03265 PF08298 PrkA AAA domain FR729_03275 PF03887 YfbU domain FR729_03285 PF04055 Radical SAM superfamily FR729_03295 PF02901 Pyruvate formate lyase-like FR729_03295 PF01228 Glycine radical FR729_03315 PF00005 ABC transporter FR729_03320 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_03325 PF00528 Binding-protein-dependent transport system inner membrane component FR729_03330 PF00528 Binding-protein-dependent transport system inner membrane component FR729_03340 PF03372 Endonuclease/Exonuclease/phosphatase family FR729_03345 PF10689 Protein of unknown function (DUF2496) FR729_03350 PF07445 Primosomal replication protein priC FR729_03355 PF01925 Sulfite exporter TauE/SafE FR729_03360 PF06733 DEAD_2 FR729_03360 PF13307 Helicase C-terminal domain FR729_03370 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FR729_03375 PF00849 RNA pseudouridylate synthase FR729_03380 PF03971 Monomeric isocitrate dehydrogenase FR729_03385 PF00313 'Cold-shock' DNA-binding domain FR729_03390 PF02617 ATP-dependent Clp protease adaptor protein ClpS FR729_03395 PF00004 ATPase family associated with various cellular activities (AAA) FR729_03395 PF02861 Clp amino terminal domain, pathogenicity island component FR729_03395 PF17871 AAA lid domain FR729_03395 PF10431 C-terminal, D2-small domain, of ClpB protein FR729_03395 PF07724 AAA domain (Cdc48 subfamily) FR729_03400 PF01176 Translation initiation factor 1A / IF-1 FR729_03405 PF04377 Arginine-tRNA-protein transferase, C terminus FR729_03405 PF04376 Arginine-tRNA-protein transferase, N terminus FR729_03410 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FR729_03420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FR729_03425 PF10692 Protein of unknown function (DUF2498) FR729_03430 PF01751 Toprim domain FR729_03430 PF01131 DNA topoisomerase FR729_03430 PF08272 Topoisomerase I zinc-ribbon-like FR729_03430 PF01396 Topoisomerase DNA binding C4 zinc finger FR729_03435 PF00483 Nucleotidyl transferase FR729_03440 PF08323 Starch synthase catalytic domain FR729_03440 PF00534 Glycosyl transferases group 1 FR729_03460 PF04994 TfoX C-terminal domain FR729_03460 PF04993 TfoX N-terminal domain FR729_03465 PF00356 Bacterial regulatory proteins, lacI family FR729_03470 PF02613 Nitrate reductase delta subunit FR729_03475 PF00072 Response regulator receiver domain FR729_03475 PF00486 Transcriptional regulatory protein, C terminal FR729_03480 PF02698 DUF218 domain FR729_03485 PF13847 Methyltransferase domain FR729_03490 PF17192 MukF middle domain FR729_03490 PF17193 MukF C-terminal domain FR729_03490 PF03882 MukF winged-helix domain FR729_03495 PF04288 MukE-like family FR729_03500 PF16330 MukB hinge domain FR729_03500 PF04310 MukB N-terminal FR729_03520 PF18030 RimK PreATP-grasp domain FR729_03520 PF08443 RimK-like ATP-grasp domain FR729_03530 PF08003 Protein of unknown function (DUF1698) FR729_03535 PF13649 Methyltransferase domain FR729_03540 PF01904 Protein of unknown function DUF72 FR729_03545 PF02938 GAD domain FR729_03545 PF00152 tRNA synthetases class II (D, K and N) FR729_03545 PF01336 OB-fold nucleic acid binding domain FR729_03550 PF01709 Transcriptional regulator FR729_03555 PF02075 Crossover junction endodeoxyribonuclease RuvC FR729_03560 PF01330 RuvA N terminal domain FR729_03560 PF07499 RuvA, C-terminal domain FR729_03565 PF05496 Holliday junction DNA helicase RuvB P-loop domain FR729_03565 PF17864 RuvB AAA lid domain FR729_03565 PF05491 RuvB C-terminal winged helix domain FR729_03570 PF01654 Cytochrome bd terminal oxidase subunit I FR729_03575 PF02322 Cytochrome bd terminal oxidase subunit II FR729_03580 PF08173 Membrane bound YbgT-like protein FR729_03590 PF03061 Thioesterase superfamily FR729_03595 PF01618 MotA/TolQ/ExbB proton channel family FR729_03600 PF02472 Biopolymer transport protein ExbD/TolR FR729_03610 PF07676 WD40-like Beta Propeller Repeat FR729_03610 PF04052 TolB amino-terminal domain FR729_03615 PF00691 OmpA family FR729_03620 PF13174 Tetratricopeptide repeat FR729_03620 PF16331 TolA binding protein trimerisation FR729_03625 PF02445 Quinolinate synthetase A protein FR729_03635 PF03994 Domain of Unknown Function (DUF350) FR729_03645 PF03738 Glutathionylspermidine synthase preATP-grasp FR729_03655 PF00072 Response regulator receiver domain FR729_03655 PF00512 His Kinase A (phospho-acceptor) domain FR729_03655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_03655 PF09308 LuxQ, periplasmic FR729_03660 PF06610 L-alanine exporter FR729_03670 PF02322 Cytochrome bd terminal oxidase subunit II FR729_03675 PF01654 Cytochrome bd terminal oxidase subunit I FR729_03690 PF17200 Single Cache domain 2 FR729_03690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_03690 PF00672 HAMP domain FR729_03695 PF00529 HlyD membrane-fusion protein of T1SS FR729_03695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_03700 PF00873 AcrB/AcrD/AcrF family FR729_03715 PF00579 tRNA synthetases class I (W and Y) FR729_03725 PF03372 Endonuclease/Exonuclease/phosphatase family FR729_03735 PF00672 HAMP domain FR729_03735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_03740 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FR729_03750 PF03466 LysR substrate binding domain FR729_03750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_03760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FR729_03760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FR729_03765 PF01037 Lrp/AsnC ligand binding domain FR729_03770 PF09397 Ftsk gamma domain FR729_03770 PF01580 FtsK/SpoIIIE family FR729_03770 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FR729_03770 PF17854 FtsK alpha domain FR729_03775 PF03548 Outer membrane lipoprotein carrier protein LolA FR729_03780 PF00004 ATPase family associated with various cellular activities (AAA) FR729_03780 PF16193 AAA C-terminal domain FR729_03780 PF12002 MgsA AAA+ ATPase C terminal FR729_03785 PF02403 Seryl-tRNA synthetase N-terminal domain FR729_03785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FR729_03790 PF01258 Prokaryotic dksA/traR C4-type zinc finger FR729_03795 PF00202 Aminotransferase class-III FR729_03800 PF06968 Biotin and Thiamin Synthesis associated domain FR729_03800 PF04055 Radical SAM superfamily FR729_03805 PF00155 Aminotransferase class I and II FR729_03810 PF08241 Methyltransferase domain FR729_03825 PF01435 Peptidase family M48 FR729_03835 PF00106 short chain dehydrogenase FR729_03860 PF16036 Chalcone isomerase-like FR729_03870 PF08328 Adenylosuccinate lyase C-terminal FR729_03870 PF00206 Lyase FR729_03875 PF04356 Protein of unknown function (DUF489) FR729_03890 PF00294 pfkB family carbohydrate kinase FR729_03895 PF00816 H-NS histone family FR729_03900 PF03553 Na+/H+ antiporter family FR729_03905 PF00158 Sigma-54 interaction domain FR729_03905 PF00072 Response regulator receiver domain FR729_03905 PF02954 Bacterial regulatory protein, Fis family FR729_03910 PF01634 ATP phosphoribosyltransferase FR729_03910 PF08029 HisG, C-terminal domain FR729_03915 PF00815 Histidinol dehydrogenase FR729_03920 PF00155 Aminotransferase class I and II FR729_03925 PF00475 Imidazoleglycerol-phosphate dehydratase FR729_03925 PF08645 Polynucleotide kinase 3 phosphatase FR729_03930 PF00117 Glutamine amidotransferase class-I FR729_03935 PF00977 Histidine biosynthesis protein FR729_03940 PF00977 Histidine biosynthesis protein FR729_03945 PF01502 Phosphoribosyl-AMP cyclohydrolase FR729_03945 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase FR729_03950 PF02810 SEC-C motif FR729_03955 PF08668 HDOD domain FR729_03955 PF00563 EAL domain FR729_03960 PF00149 Calcineurin-like phosphoesterase FR729_03965 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FR729_03970 PF09190 DALR domain FR729_03970 PF01406 tRNA synthetases class I (C) catalytic domain FR729_03975 PF00265 Thymidine kinase FR729_04005 PF01226 Formate/nitrite transporter FR729_04015 PF03649 Uncharacterised protein family (UPF0014) FR729_04020 PF06796 Periplasmic nitrate reductase protein NapE FR729_04025 PF03264 NapC/NirT cytochrome c family, N-terminal region FR729_04030 PF01568 Molydopterin dinucleotide binding domain FR729_04030 PF18364 Molybdopterin oxidoreductase N-terminal domain FR729_04030 PF00384 Molybdopterin oxidoreductase FR729_04035 PF16874 Glycosyl hydrolase family 36 C-terminal domain FR729_04035 PF16875 Glycosyl hydrolase family 36 N-terminal domain FR729_04045 PF01368 DHH family FR729_04045 PF02833 DHHA2 domain FR729_04055 PF00005 ABC transporter FR729_04060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_04060 PF00005 ABC transporter FR729_04065 PF00528 Binding-protein-dependent transport system inner membrane component FR729_04065 PF12911 N-terminal TM domain of oligopeptide transport permease C FR729_04070 PF00528 Binding-protein-dependent transport system inner membrane component FR729_04075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_04080 PF00158 Sigma-54 interaction domain FR729_04080 PF02954 Bacterial regulatory protein, Fis family FR729_04085 PF04012 PspA/IM30 family FR729_04090 PF06667 Phage shock protein B FR729_04095 PF04024 PspC domain FR729_04105 PF13533 Biotin-lipoyl like FR729_04110 PF00873 AcrB/AcrD/AcrF family FR729_04115 PF03352 Methyladenine glycosylase FR729_04120 PF03280 Proteobacterial lipase chaperone protein FR729_04125 PF00561 alpha/beta hydrolase fold FR729_04130 PF01053 Cys/Met metabolism PLP-dependent enzyme FR729_04135 PF13091 PLD-like domain FR729_04135 PF13396 Phospholipase_D-nuclease N-terminal FR729_04140 PF00209 Sodium:neurotransmitter symporter family FR729_04145 PF00849 RNA pseudouridylate synthase FR729_04155 PF00970 Oxidoreductase FAD-binding domain FR729_04155 PF00175 Oxidoreductase NAD-binding domain FR729_04155 PF00111 2Fe-2S iron-sulfur cluster binding domain FR729_04160 PF03063 Prismane/CO dehydrogenase family FR729_04165 PF00158 Sigma-54 interaction domain FR729_04165 PF01590 GAF domain FR729_04180 PF01066 CDP-alcohol phosphatidyltransferase FR729_04185 PF00005 ABC transporter FR729_04190 PF00528 Binding-protein-dependent transport system inner membrane component FR729_04195 PF13416 Bacterial extracellular solute-binding protein FR729_04205 PF06945 Protein of unknown function (DUF1289) FR729_04220 PF02872 5'-nucleotidase, C-terminal domain FR729_04220 PF00149 Calcineurin-like phosphoesterase FR729_04230 PF01386 Ribosomal L25p family FR729_04235 PF00672 HAMP domain FR729_04235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_04235 PF00512 His Kinase A (phospho-acceptor) domain FR729_04240 PF00072 Response regulator receiver domain FR729_04240 PF00486 Transcriptional regulatory protein, C terminal FR729_04250 PF04851 Type III restriction enzyme, res subunit FR729_04250 PF00271 Helicase conserved C-terminal domain FR729_04255 PF01479 S4 domain FR729_04255 PF00849 RNA pseudouridylate synthase FR729_04265 PF07690 Major Facilitator Superfamily FR729_04275 PF11066 Protein of unknown function (DUF2867) FR729_04275 PF13460 NAD(P)H-binding FR729_04280 PF01554 MatE FR729_04285 PF00005 ABC transporter FR729_04300 PF06965 Na+/H+ antiporter 1 FR729_04305 PF16295 Tetracyclin repressor-like, C-terminal domain FR729_04305 PF00440 Bacterial regulatory proteins, tetR family FR729_04310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FR729_04310 PF09317 Domain of unknown function (DUF1974) FR729_04310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FR729_04310 PF02770 Acyl-CoA dehydrogenase, middle domain FR729_04315 PF12241 Trans-2-enoyl-CoA reductase catalytic region FR729_04315 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FR729_04315 PF07055 Enoyl reductase FAD binding domain FR729_04320 PF02080 TrkA-C domain FR729_04320 PF06826 Predicted Permease Membrane Region FR729_04325 PF00462 Glutaredoxin FR729_04335 PF00465 Iron-containing alcohol dehydrogenase FR729_04340 PF01380 SIS domain FR729_04340 PF01418 Helix-turn-helix domain, rpiR family FR729_04345 PF00282 Pyridoxal-dependent decarboxylase conserved domain FR729_04355 PF03956 Lysine exporter LysO FR729_04375 PF04994 TfoX C-terminal domain FR729_04375 PF04993 TfoX N-terminal domain FR729_04390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_04390 PF00512 His Kinase A (phospho-acceptor) domain FR729_04390 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_04400 PF00266 Aminotransferase class-V FR729_04405 PF00291 Pyridoxal-phosphate dependent enzyme FR729_04410 PF00005 ABC transporter FR729_04410 PF00664 ABC transporter transmembrane region FR729_04415 PF00664 ABC transporter transmembrane region FR729_04415 PF00005 ABC transporter FR729_04420 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_04430 PF00266 Aminotransferase class-V FR729_04440 PF00990 Diguanylate cyclase, GGDEF domain FR729_04440 PF00072 Response regulator receiver domain FR729_04445 PF00939 Sodium:sulfate symporter transmembrane region FR729_04450 PF02698 DUF218 domain FR729_04455 PF03949 Malic enzyme, NAD binding domain FR729_04455 PF00390 Malic enzyme, N-terminal domain FR729_04460 PF04408 Helicase associated domain (HA2) FR729_04460 PF11898 Domain of unknown function (DUF3418) FR729_04460 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FR729_04460 PF00271 Helicase conserved C-terminal domain FR729_04460 PF00270 DEAD/DEAH box helicase FR729_04470 PF16655 PhoD-like phosphatase, N-terminal domain FR729_04470 PF09423 PhoD-like phosphatase FR729_04475 PF01259 SAICAR synthetase FR729_04495 PF05736 OprF membrane domain FR729_04495 PF00691 OmpA family FR729_04510 PF13183 4Fe-4S dicluster domain FR729_04510 PF02913 FAD linked oxidases, C-terminal domain FR729_04510 PF01565 FAD binding domain FR729_04515 PF04191 Phospholipid methyltransferase FR729_04525 PF00221 Aromatic amino acid lyase FR729_04530 PF01175 Urocanase Rossmann-like domain FR729_04530 PF17391 Urocanase N-terminal domain FR729_04530 PF17392 Urocanase C-terminal domain FR729_04535 PF00491 Arginase family FR729_04540 PF01979 Amidohydrolase family FR729_04545 PF07702 UTRA domain FR729_04545 PF00392 Bacterial regulatory proteins, gntR family FR729_04560 PF02824 TGS domain FR729_04560 PF03129 Anticodon binding domain FR729_04560 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FR729_04560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FR729_04565 PF00707 Translation initiation factor IF-3, C-terminal domain FR729_04565 PF05198 Translation initiation factor IF-3, N-terminal domain FR729_04570 PF01632 Ribosomal protein L35 FR729_04575 PF00453 Ribosomal protein L20 FR729_04580 PF01906 Putative heavy-metal-binding FR729_04615 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FR729_04615 PF01409 tRNA synthetases class II core domain (F) FR729_04620 PF03147 Ferredoxin-fold anticodon binding domain FR729_04620 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FR729_04620 PF03484 tRNA synthetase B5 domain FR729_04620 PF03483 B3/4 domain FR729_04620 PF01588 Putative tRNA binding domain FR729_04630 PF00216 Bacterial DNA-binding protein FR729_04640 PF05724 Thiopurine S-methyltransferase (TPMT) FR729_04645 PF02222 ATP-grasp domain FR729_04650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FR729_04650 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region FR729_04655 PF04172 LrgB-like family FR729_04660 PF03788 LrgA family FR729_04665 PF08411 Exonuclease C-terminal FR729_04665 PF00929 Exonuclease FR729_04675 PF13460 NAD(P)H-binding FR729_04680 PF02277 Phosphoribosyltransferase FR729_04685 PF02654 Cobalamin-5-phosphate synthase FR729_04690 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase FR729_04705 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FR729_04710 PF01032 FecCD transport family FR729_04715 PF00005 ABC transporter FR729_04735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_04735 PF03466 LysR substrate binding domain FR729_04745 PF01863 Protein of unknown function DUF45 FR729_04750 PF05971 RNA methyltransferase FR729_04770 PF00392 Bacterial regulatory proteins, gntR family FR729_04775 PF00171 Aldehyde dehydrogenase family FR729_04780 PF05544 Proline racemase FR729_04785 PF01266 FAD dependent oxidoreductase FR729_04785 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FR729_04795 PF02423 Ornithine cyclodeaminase/mu-crystallin family FR729_04800 PF00701 Dihydrodipicolinate synthetase family FR729_04805 PF00005 ABC transporter FR729_04805 PF08402 TOBE domain FR729_04810 PF00528 Binding-protein-dependent transport system inner membrane component FR729_04815 PF00528 Binding-protein-dependent transport system inner membrane component FR729_04825 PF01752 Collagenase FR729_04825 PF08453 Peptidase family M9 N-terminal FR729_04835 PF00005 ABC transporter FR729_04835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_04840 PF00005 ABC transporter FR729_04840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_04845 PF12911 N-terminal TM domain of oligopeptide transport permease C FR729_04845 PF00528 Binding-protein-dependent transport system inner membrane component FR729_04850 PF00528 Binding-protein-dependent transport system inner membrane component FR729_04855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_04860 PF01546 Peptidase family M20/M25/M40 FR729_04860 PF07687 Peptidase dimerisation domain FR729_04865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FR729_04870 PF04209 homogentisate 1,2-dioxygenase FR729_04880 PF02798 Glutathione S-transferase, N-terminal domain FR729_04880 PF14497 Glutathione S-transferase, C-terminal domain FR729_04930 PF07007 Lysozyme inhibitor LprI FR729_04955 PF02694 Uncharacterised BCR, YnfA/UPF0060 family FR729_04970 PF03553 Na+/H+ antiporter family FR729_04975 PF00120 Glutamine synthetase, catalytic domain FR729_04985 PF07722 Peptidase C26 FR729_04990 PF07883 Cupin domain FR729_04990 PF01381 Helix-turn-helix FR729_04995 PF00171 Aldehyde dehydrogenase family FR729_05000 PF01266 FAD dependent oxidoreductase FR729_05005 PF00795 Carbon-nitrogen hydrolase FR729_05010 PF04371 Porphyromonas-type peptidyl-arginine deiminase FR729_05015 PF00171 Aldehyde dehydrogenase family FR729_05020 PF00202 Aminotransferase class-III FR729_05025 PF00563 EAL domain FR729_05025 PF12792 CSS motif domain associated with EAL FR729_05035 PF01047 MarR family FR729_05040 PF04237 YjbR FR729_05065 PF00672 HAMP domain FR729_05065 PF00512 His Kinase A (phospho-acceptor) domain FR729_05065 PF00072 Response regulator receiver domain FR729_05065 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FR729_05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_05065 PF01627 Hpt domain FR729_05070 PF03707 Bacterial signalling protein N terminal repeat FR729_05070 PF00990 Diguanylate cyclase, GGDEF domain FR729_05070 PF00563 EAL domain FR729_05085 PF04204 Homoserine O-succinyltransferase FR729_05095 PF00893 Small Multidrug Resistance protein FR729_05100 PF03279 Bacterial lipid A biosynthesis acyltransferase FR729_05105 PF02074 Carboxypeptidase Taq (M32) metallopeptidase FR729_05110 PF01810 LysE type translocator FR729_05120 PF01235 Sodium:alanine symporter family FR729_05145 PF00884 Sulfatase FR729_05150 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FR729_05155 PF00528 Binding-protein-dependent transport system inner membrane component FR729_05160 PF00005 ABC transporter FR729_05160 PF00571 CBS domain FR729_05175 PF02028 BCCT, betaine/carnitine/choline family transporter FR729_05180 PF00583 Acetyltransferase (GNAT) family FR729_05185 PF00202 Aminotransferase class-III FR729_05190 PF06339 Ectoine synthase FR729_05195 PF13840 ACT domain FR729_05195 PF00696 Amino acid kinase family FR729_05205 PF00884 Sulfatase FR729_05215 PF03781 Sulfatase-modifying factor enzyme 1 FR729_05220 PF04055 Radical SAM superfamily FR729_05220 PF13186 Iron-sulfur cluster-binding domain FR729_05235 PF00884 Sulfatase FR729_05240 PF00884 Sulfatase FR729_05250 PF03412 Peptidase C39 family FR729_05250 PF00005 ABC transporter FR729_05250 PF00664 ABC transporter transmembrane region FR729_05260 PF02321 Outer membrane efflux protein FR729_05275 PF00455 DeoR C terminal sensor domain FR729_05275 PF08220 DeoR-like helix-turn-helix domain FR729_05280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FR729_05280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FR729_05285 PF03928 Haem-degrading FR729_05290 PF00072 Response regulator receiver domain FR729_05290 PF00990 Diguanylate cyclase, GGDEF domain FR729_05310 PF00939 Sodium:sulfate symporter transmembrane region FR729_05315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_05315 PF00512 His Kinase A (phospho-acceptor) domain FR729_05320 PF00072 Response regulator receiver domain FR729_05320 PF00158 Sigma-54 interaction domain FR729_05320 PF02954 Bacterial regulatory protein, Fis family FR729_05325 PF03707 Bacterial signalling protein N terminal repeat FR729_05325 PF00990 Diguanylate cyclase, GGDEF domain FR729_05325 PF00563 EAL domain FR729_05330 PF11871 Domain of unknown function (DUF3391) FR729_05330 PF01966 HD domain FR729_05335 PF01810 LysE type translocator FR729_05340 PF11230 Protein of unknown function (DUF3029) FR729_05345 PF04055 Radical SAM superfamily FR729_05355 PF03741 Integral membrane protein TerC family FR729_05365 PF01966 HD domain FR729_05370 PF00465 Iron-containing alcohol dehydrogenase FR729_05375 PF03222 Tryptophan/tyrosine permease family FR729_05390 PF00005 ABC transporter FR729_05395 PF01497 Periplasmic binding protein FR729_05400 PF01032 FecCD transport family FR729_05405 PF07715 TonB-dependent Receptor Plug Domain FR729_05405 PF00593 TonB dependent receptor FR729_05415 PF00664 ABC transporter transmembrane region FR729_05415 PF00005 ABC transporter FR729_05420 PF00005 ABC transporter FR729_05420 PF00664 ABC transporter transmembrane region FR729_05425 PF08334 Type II secretion system (T2SS), protein G FR729_05425 PF07963 Prokaryotic N-terminal methylation motif FR729_05435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_05435 PF03466 LysR substrate binding domain FR729_05445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FR729_05445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FR729_05460 PF00012 Hsp70 protein FR729_05465 PF00012 Hsp70 protein FR729_05475 PF00990 Diguanylate cyclase, GGDEF domain FR729_05510 PF02525 Flavodoxin-like fold FR729_05515 PF11898 Domain of unknown function (DUF3418) FR729_05515 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FR729_05515 PF04408 Helicase associated domain (HA2) FR729_05515 PF00271 Helicase conserved C-terminal domain FR729_05515 PF00270 DEAD/DEAH box helicase FR729_05530 PF02028 BCCT, betaine/carnitine/choline family transporter FR729_05540 PF02397 Bacterial sugar transferase FR729_05550 PF13439 Glycosyltransferase Family 4 FR729_05550 PF00534 Glycosyl transferases group 1 FR729_05580 PF00534 Glycosyl transferases group 1 FR729_05580 PF13439 Glycosyltransferase Family 4 FR729_05585 PF00534 Glycosyl transferases group 1 FR729_05585 PF13439 Glycosyltransferase Family 4 FR729_05590 PF02954 Bacterial regulatory protein, Fis family FR729_05590 PF00072 Response regulator receiver domain FR729_05590 PF00158 Sigma-54 interaction domain FR729_05605 PF02563 Polysaccharide biosynthesis/export protein FR729_05605 PF10531 SLBB domain FR729_05615 PF01740 STAS domain FR729_05620 PF01068 ATP dependent DNA ligase domain FR729_05620 PF14743 DNA ligase OB-like domain FR729_05630 PF01554 MatE FR729_05635 PF00677 Lumazine binding domain FR729_05645 PF03881 Fructosamine kinase FR729_05650 PF00072 Response regulator receiver domain FR729_05650 PF01339 CheB methylesterase FR729_05655 PF00990 Diguanylate cyclase, GGDEF domain FR729_05655 PF05230 MASE2 domain FR729_05665 PF00877 NlpC/P60 family FR729_05705 PF00480 ROK family FR729_05715 PF00994 Probable molybdopterin binding domain FR729_05715 PF03454 MoeA C-terminal region (domain IV) FR729_05715 PF03453 MoeA N-terminal region (domain I and II) FR729_05720 PF12804 MobA-like NTP transferase domain FR729_05725 PF08402 TOBE domain FR729_05725 PF00005 ABC transporter FR729_05730 PF00528 Binding-protein-dependent transport system inner membrane component FR729_05735 PF12849 PBP superfamily domain FR729_05740 PF02954 Bacterial regulatory protein, Fis family FR729_05740 PF00158 Sigma-54 interaction domain FR729_05740 PF00072 Response regulator receiver domain FR729_05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_05745 PF00512 His Kinase A (phospho-acceptor) domain FR729_05755 PF00005 ABC transporter FR729_05755 PF12848 ABC transporter FR729_05760 PF02634 FdhD/NarQ family FR729_05780 PF02613 Nitrate reductase delta subunit FR729_05790 PF01568 Molydopterin dinucleotide binding domain FR729_05790 PF00384 Molybdopterin oxidoreductase FR729_05790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FR729_05795 PF13247 4Fe-4S dicluster domain FR729_05820 PF00909 Ammonium Transporter Family FR729_05825 PF02146 Sir2 family FR729_05835 PF13416 Bacterial extracellular solute-binding protein FR729_05840 PF13416 Bacterial extracellular solute-binding protein FR729_05845 PF00528 Binding-protein-dependent transport system inner membrane component FR729_05850 PF00528 Binding-protein-dependent transport system inner membrane component FR729_05855 PF08402 TOBE domain FR729_05855 PF00005 ABC transporter FR729_05875 PF01171 PP-loop family FR729_05880 PF00582 Universal stress protein family FR729_05885 PF00027 Cyclic nucleotide-binding domain FR729_05885 PF13545 Crp-like helix-turn-helix domain FR729_05900 PF00403 Heavy-metal-associated domain FR729_05910 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FR729_05910 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP FR729_05925 PF00115 Cytochrome C and Quinol oxidase polypeptide I FR729_05940 PF00072 Response regulator receiver domain FR729_05940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_05940 PF00512 His Kinase A (phospho-acceptor) domain FR729_05940 PF09308 LuxQ, periplasmic FR729_05955 PF06303 MatP N-terminal domain FR729_05955 PF17414 MatP C-terminal ribbon-helix-helix domain FR729_05960 PF05362 Lon protease (S16) C-terminal proteolytic domain FR729_05960 PF13654 AAA domain FR729_05965 PF07977 FabA-like domain FR729_05970 PF04957 Ribosome modulation factor FR729_05990 PF10672 S-adenosylmethionine-dependent methyltransferase FR729_05990 PF02926 THUMP domain FR729_05990 PF01170 Putative RNA methylase family UPF0020 FR729_05995 PF07126 Cell-division protein ZapC FR729_06000 PF01180 Dihydroorotate dehydrogenase FR729_06005 PF05088 Bacterial NAD-glutamate dehydrogenase FR729_06015 PF11940 Domain of unknown function (DUF3458) Ig-like fold FR729_06015 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FR729_06015 PF01433 Peptidase family M1 domain FR729_06025 PF11818 C-terminal domain of tail specific protease (DUF3340) FR729_06025 PF03572 Peptidase family S41 FR729_06025 PF17804 Tail specific protease N-terminal domain FR729_06025 PF00595 PDZ domain FR729_06030 PF04352 ProQ/FINO family FR729_06030 PF17516 ProQ C-terminal domain FR729_06035 PF13185 GAF domain FR729_06040 PF00005 ABC transporter FR729_06040 PF00664 ABC transporter transmembrane region FR729_06045 PF04403 Paraquat-inducible protein A FR729_06050 PF02470 MlaD protein FR729_06055 PF01189 16S rRNA methyltransferase RsmB/F FR729_06055 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF FR729_06055 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF FR729_06075 PF00793 DAHP synthetase I family FR729_06080 PF04461 Protein of unknown function (DUF520) FR729_06085 PF14824 Sirohaem biosynthesis protein central FR729_06085 PF10414 Sirohaem synthase dimerisation region FR729_06085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FR729_06095 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_06100 PF00528 Binding-protein-dependent transport system inner membrane component FR729_06105 PF00528 Binding-protein-dependent transport system inner membrane component FR729_06110 PF00005 ABC transporter FR729_06115 PF01027 Inhibitor of apoptosis-promoting Bax1 FR729_06125 PF04358 DsrC like protein FR729_06130 PF00708 Acylphosphatase FR729_06135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_06135 PF00672 HAMP domain FR729_06135 PF02743 Cache domain FR729_06140 PF10672 S-adenosylmethionine-dependent methyltransferase FR729_06140 PF17785 PUA-like domain FR729_06155 PF05736 OprF membrane domain FR729_06155 PF00691 OmpA family FR729_06175 PF05736 OprF membrane domain FR729_06175 PF00691 OmpA family FR729_06185 PF13185 GAF domain FR729_06185 PF00990 Diguanylate cyclase, GGDEF domain FR729_06190 PF09339 IclR helix-turn-helix domain FR729_06190 PF01614 Bacterial transcriptional regulator FR729_06200 PF00248 Aldo/keto reductase family FR729_06205 PF03466 LysR substrate binding domain FR729_06205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_06215 PF03466 LysR substrate binding domain FR729_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_06220 PF07690 Major Facilitator Superfamily FR729_06230 PF00109 Beta-ketoacyl synthase, N-terminal domain FR729_06230 PF00107 Zinc-binding dehydrogenase FR729_06230 PF02801 Beta-ketoacyl synthase, C-terminal domain FR729_06230 PF08659 KR domain FR729_06230 PF00550 Phosphopantetheine attachment site FR729_06230 PF00698 Acyl transferase domain FR729_06230 PF14765 Polyketide synthase dehydratase FR729_06230 PF08240 Alcohol dehydrogenase GroES-like domain FR729_06230 PF16197 Ketoacyl-synthetase C-terminal extension FR729_06235 PF02311 AraC-like ligand binding domain FR729_06235 PF12833 Helix-turn-helix domain FR729_06240 PF00857 Isochorismatase family FR729_06245 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_06255 PF00107 Zinc-binding dehydrogenase FR729_06255 PF08240 Alcohol dehydrogenase GroES-like domain FR729_06260 PF00809 Pterin binding enzyme FR729_06260 PF02310 B12 binding domain FR729_06260 PF02607 B12 binding domain FR729_06260 PF02574 Homocysteine S-methyltransferase FR729_06260 PF02965 Vitamin B12 dependent methionine synthase, activation domain FR729_06265 PF00005 ABC transporter FR729_06270 PF00528 Binding-protein-dependent transport system inner membrane component FR729_06275 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_06285 PF00267 Gram-negative porin FR729_06290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_06290 PF03466 LysR substrate binding domain FR729_06300 PF00873 AcrB/AcrD/AcrF family FR729_06305 PF03466 LysR substrate binding domain FR729_06305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_06315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_06315 PF03466 LysR substrate binding domain FR729_06320 PF01810 LysE type translocator FR729_06330 PF06508 Queuosine biosynthesis protein QueC FR729_06335 PF04055 Radical SAM superfamily FR729_06350 PF00089 Trypsin FR729_06360 PF13193 AMP-binding enzyme C-terminal domain FR729_06360 PF16177 Acetyl-coenzyme A synthetase N-terminus FR729_06360 PF00501 AMP-binding enzyme FR729_06365 PF04303 PrpF protein FR729_06370 PF00330 Aconitase family (aconitate hydratase) FR729_06370 PF00694 Aconitase C-terminal domain FR729_06375 PF00285 Citrate synthase, C-terminal domain FR729_06405 PF01970 Tripartite tricarboxylate transporter TctA family FR729_06415 PF01925 Sulfite exporter TauE/SafE FR729_06420 PF16868 NMT1-like family FR729_06430 PF05844 YopD protein FR729_06440 PF07720 Tetratricopeptide repeat FR729_06445 PF04792 V antigen (LcrV) protein FR729_06455 PF09621 Type III secretion system regulator (LcrR) FR729_06460 PF00771 FHIPEP family FR729_06480 PF09059 TyeA FR729_06490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FR729_06490 PF02874 ATP synthase alpha/beta family, beta-barrel domain FR729_06490 PF18269 T3SS EscN ATPase C-terminal domain FR729_06505 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FR729_06510 PF00813 FliP family FR729_06515 PF01313 Bacterial export proteins, family 3 FR729_06520 PF01311 Bacterial export proteins, family 1 FR729_06525 PF01312 FlhB HrpN YscU SpaS Family FR729_06530 PF12833 Helix-turn-helix domain FR729_06530 PF12852 Cupin FR729_06560 PF02661 Fic/DOC family FR729_06570 PF02108 Flagellar assembly protein FliH FR729_06580 PF01514 Secretory protein of YscJ/FliF family FR729_06585 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI FR729_06595 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) FR729_06600 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF FR729_06610 PF16693 Inner membrane component of T3SS, periplasmic domain FR729_06610 PF16697 Inner membrane component of T3SS, cytoplasmic domain FR729_06615 PF03958 Bacterial type II/III secretion system short domain FR729_06615 PF00263 Bacterial type II and III secretion system protein FR729_06630 PF12833 Helix-turn-helix domain FR729_06650 PF00171 Aldehyde dehydrogenase family FR729_06655 PF02954 Bacterial regulatory protein, Fis family FR729_06655 PF01590 GAF domain FR729_06655 PF00158 Sigma-54 interaction domain FR729_06670 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FR729_06670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FR729_06675 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FR729_06680 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain FR729_06680 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain FR729_06685 PF02311 AraC-like ligand binding domain FR729_06685 PF12833 Helix-turn-helix domain FR729_06690 PF00593 TonB dependent receptor FR729_06690 PF07715 TonB-dependent Receptor Plug Domain FR729_06695 PF12431 Transcriptional regulator FR729_06695 PF00072 Response regulator receiver domain FR729_06700 PF17203 Single cache domain 3 FR729_06700 PF00989 PAS fold FR729_06700 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain FR729_06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_06715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_06730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_06730 PF03466 LysR substrate binding domain FR729_06745 PF08543 Phosphomethylpyrimidine kinase FR729_06750 PF00155 Aminotransferase class I and II FR729_06755 PF02080 TrkA-C domain FR729_06755 PF06826 Predicted Permease Membrane Region FR729_06765 PF13533 Biotin-lipoyl like FR729_06780 PF00135 Carboxylesterase family FR729_06785 PF13091 PLD-like domain FR729_06790 PF17243 POTRA domain TamA domain 1 FR729_06790 PF01103 Surface antigen FR729_06795 PF11008 Protein of unknown function (DUF2846) FR729_06800 PF01810 LysE type translocator FR729_06805 PF01810 LysE type translocator FR729_06810 PF07237 Protein of unknown function (DUF1428) FR729_06830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FR729_06830 PF01411 tRNA synthetases class II (A) FR729_06830 PF02272 DHHA1 domain FR729_06835 PF13302 Acetyltransferase (GNAT) domain FR729_06840 PF12464 Maltose acetyltransferase FR729_06840 PF14602 Hexapeptide repeat of succinyl-transferase FR729_07010 PF03544 Gram-negative bacterial TonB protein C-terminal FR729_07020 PF13276 HTH-like domain FR729_07020 PF13333 Integrase core domain FR729_07020 PF00665 Integrase core domain FR729_07065 PF08241 Methyltransferase domain FR729_07325 PF05016 ParE toxin of type II toxin-antitoxin system, parDE FR729_07360 PF00665 Integrase core domain FR729_07360 PF13333 Integrase core domain FR729_07360 PF13276 HTH-like domain FR729_07590 PF13276 HTH-like domain FR729_07590 PF13333 Integrase core domain FR729_07590 PF00665 Integrase core domain FR729_07785 PF00583 Acetyltransferase (GNAT) family FR729_07820 PF02798 Glutathione S-transferase, N-terminal domain FR729_07855 PF13495 Phage integrase, N-terminal SAM-like domain FR729_07855 PF00589 Phage integrase family FR729_07870 PF13302 Acetyltransferase (GNAT) domain FR729_07875 PF18024 Helix-turn-helix domain FR729_07875 PF00158 Sigma-54 interaction domain FR729_07880 PF05128 Domain of unknown function (DUF697) FR729_07885 PF04317 YcjX-like family, DUF463 FR729_07905 PF00425 chorismate binding enzyme FR729_07905 PF04715 Anthranilate synthase component I, N terminal region FR729_07910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_07910 PF00512 His Kinase A (phospho-acceptor) domain FR729_07910 PF00072 Response regulator receiver domain FR729_07910 PF09308 LuxQ, periplasmic FR729_07920 PF00293 NUDIX domain FR729_07925 PF03222 Tryptophan/tyrosine permease family FR729_07930 PF03313 Serine dehydratase alpha chain FR729_07930 PF03315 Serine dehydratase beta chain FR729_07935 PF00563 EAL domain FR729_07935 PF04940 Sensors of blue-light using FAD FR729_07945 PF01242 6-pyruvoyl tetrahydropterin synthase FR729_07950 PF17200 Single Cache domain 2 FR729_07950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_07950 PF00672 HAMP domain FR729_07955 PF01336 OB-fold nucleic acid binding domain FR729_07955 PF00152 tRNA synthetases class II (D, K and N) FR729_07965 PF00392 Bacterial regulatory proteins, gntR family FR729_07965 PF00155 Aminotransferase class I and II FR729_07980 PF00155 Aminotransferase class I and II FR729_08000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_08000 PF00672 HAMP domain FR729_08005 PF02028 BCCT, betaine/carnitine/choline family transporter FR729_08015 PF00196 Bacterial regulatory proteins, luxR family FR729_08015 PF00072 Response regulator receiver domain FR729_08020 PF07730 Histidine kinase FR729_08020 PF17200 Single Cache domain 2 FR729_08025 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FR729_08035 PF03480 Bacterial extracellular solute-binding protein, family 7 FR729_08050 PF00753 Metallo-beta-lactamase superfamily FR729_08055 PF05951 Bacterial protein of unknown function (DUF882) FR729_08060 PF01471 Putative peptidoglycan binding domain FR729_08060 PF03734 L,D-transpeptidase catalytic domain FR729_08085 PF00925 GTP cyclohydrolase II FR729_08095 PF03918 Cytochrome C biogenesis protein FR729_08100 PF08534 Redoxin FR729_08105 PF01578 Cytochrome C assembly protein FR729_08105 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FR729_08110 PF03916 Polysulphide reductase, NrfD FR729_08115 PF13247 4Fe-4S dicluster domain FR729_08125 PF02335 Cytochrome c552 FR729_08140 PF03989 DNA gyrase C-terminal domain, beta-propeller FR729_08140 PF00521 DNA gyrase/topoisomerase IV, subunit A FR729_08155 PF00317 Ribonucleotide reductase, all-alpha domain FR729_08155 PF02867 Ribonucleotide reductase, barrel domain FR729_08155 PF03477 ATP cone domain FR729_08160 PF00268 Ribonucleotide reductase, small chain FR729_08170 PF00994 Probable molybdopterin binding domain FR729_08185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FR729_08190 PF03435 Saccharopine dehydrogenase NADP binding domain FR729_08190 PF16653 Saccharopine dehydrogenase C-terminal domain FR729_08195 PF00202 Aminotransferase class-III FR729_08220 PF01066 CDP-alcohol phosphatidyltransferase FR729_08225 PF01541 GIY-YIG catalytic domain FR729_08225 PF02151 UvrB/uvrC motif FR729_08225 PF08459 UvrC Helix-hairpin-helix N-terminal FR729_08230 PF00196 Bacterial regulatory proteins, luxR family FR729_08230 PF00072 Response regulator receiver domain FR729_08235 PF03104 DNA polymerase family B, exonuclease domain FR729_08235 PF00136 DNA polymerase family B FR729_08245 PF08207 Elongation factor P (EF-P) KOW-like domain FR729_08245 PF01132 Elongation factor P (EF-P) OB domain FR729_08245 PF09285 Elongation factor P, C-terminal FR729_08250 PF04269 Protein of unknown function, DUF440 FR729_08255 PF00849 RNA pseudouridylate synthase FR729_08255 PF01479 S4 domain FR729_08265 PF01300 Telomere recombination FR729_08270 PF02811 PHP domain FR729_08275 PF08056 Tryptophan operon leader peptide FR729_08280 PF04715 Anthranilate synthase component I, N terminal region FR729_08280 PF00425 chorismate binding enzyme FR729_08285 PF00117 Glutamine amidotransferase class-I FR729_08290 PF00591 Glycosyl transferase family, a/b domain FR729_08290 PF02885 Glycosyl transferase family, helical bundle domain FR729_08295 PF00218 Indole-3-glycerol phosphate synthase FR729_08295 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FR729_08300 PF00291 Pyridoxal-phosphate dependent enzyme FR729_08305 PF00290 Tryptophan synthase alpha chain FR729_08310 PF13545 Crp-like helix-turn-helix domain FR729_08310 PF00027 Cyclic nucleotide-binding domain FR729_08315 PF00501 AMP-binding enzyme FR729_08315 PF13193 AMP-binding enzyme C-terminal domain FR729_08325 PF00375 Sodium:dicarboxylate symporter family FR729_08330 PF17327 Acyl homoserine lactone synthase FR729_08335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_08335 PF00072 Response regulator receiver domain FR729_08345 PF04279 Intracellular septation protein A FR729_08350 PF03061 Thioesterase superfamily FR729_08355 PF03795 YCII-related domain FR729_08365 PF08267 Cobalamin-independent synthase, N-terminal domain FR729_08365 PF01717 Cobalamin-independent synthase, Catalytic domain FR729_08370 PF03466 LysR substrate binding domain FR729_08370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_08385 PF00563 EAL domain FR729_08385 PF08447 PAS fold FR729_08385 PF08448 PAS fold FR729_08385 PF00990 Diguanylate cyclase, GGDEF domain FR729_08390 PF04055 Radical SAM superfamily FR729_08390 PF08497 Radical SAM N-terminal FR729_08390 PF11842 Domain of unknown function (DUF3362) FR729_08410 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase FR729_08415 PF00535 Glycosyl transferase family 2 FR729_08420 PF00072 Response regulator receiver domain FR729_08420 PF00486 Transcriptional regulatory protein, C terminal FR729_08425 PF00512 His Kinase A (phospho-acceptor) domain FR729_08425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_08425 PF00672 HAMP domain FR729_08440 PF03466 LysR substrate binding domain FR729_08440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_08445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_08445 PF00529 HlyD membrane-fusion protein of T1SS FR729_08455 PF08267 Cobalamin-independent synthase, N-terminal domain FR729_08455 PF01717 Cobalamin-independent synthase, Catalytic domain FR729_08470 PF02311 AraC-like ligand binding domain FR729_08470 PF12833 Helix-turn-helix domain FR729_08475 PF00857 Isochorismatase family FR729_08480 PF12704 MacB-like periplasmic core domain FR729_08480 PF00005 ABC transporter FR729_08480 PF02687 FtsX-like permease family FR729_08485 PF02687 FtsX-like permease family FR729_08485 PF12704 MacB-like periplasmic core domain FR729_08485 PF00005 ABC transporter FR729_08490 PF02687 FtsX-like permease family FR729_08490 PF00005 ABC transporter FR729_08490 PF12704 MacB-like periplasmic core domain FR729_08500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_08515 PF05958 tRNA (Uracil-5-)-methyltransferase FR729_08515 PF01938 TRAM domain FR729_08525 PF00085 Thioredoxin FR729_08530 PF02683 Cytochrome C biogenesis protein transmembrane region FR729_08530 PF11412 Disulphide bond corrector protein DsbC FR729_08530 PF13098 Thioredoxin-like domain FR729_08540 PF00072 Response regulator receiver domain FR729_08540 PF00196 Bacterial regulatory proteins, luxR family FR729_08545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_08545 PF00512 His Kinase A (phospho-acceptor) domain FR729_08550 PF13247 4Fe-4S dicluster domain FR729_08555 PF03916 Polysulphide reductase, NrfD FR729_08560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FR729_08560 PF01568 Molydopterin dinucleotide binding domain FR729_08560 PF00384 Molybdopterin oxidoreductase FR729_08565 PF00034 Cytochrome c FR729_08570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FR729_08575 PF04403 Paraquat-inducible protein A FR729_08580 PF02470 MlaD protein FR729_08600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_08605 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FR729_08610 PF18073 Rubredoxin metal binding domain FR729_08615 PF06305 Lipopolysaccharide assembly protein A domain FR729_08620 PF00216 Bacterial DNA-binding protein FR729_08625 PF00575 S1 RNA binding domain FR729_08630 PF02224 Cytidylate kinase FR729_08635 PF01343 Peptidase family S49 FR729_08635 PF08496 Peptidase family S49 N-terminal FR729_08640 PF00106 short chain dehydrogenase FR729_08655 PF07733 Bacterial DNA polymerase III alpha NTPase domain FR729_08655 PF01336 OB-fold nucleic acid binding domain FR729_08655 PF02811 PHP domain FR729_08655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FR729_08655 PF14579 Helix-hairpin-helix motif FR729_08660 PF01584 CheW-like domain FR729_08660 PF00072 Response regulator receiver domain FR729_08665 PF00480 ROK family FR729_08670 PF00224 Pyruvate kinase, barrel domain FR729_08670 PF02887 Pyruvate kinase, alpha/beta domain FR729_08675 PF01734 Patatin-like phospholipase FR729_08690 PF00209 Sodium:neurotransmitter symporter family FR729_08705 PF00367 phosphotransferase system, EIIB FR729_08705 PF02378 Phosphotransferase system, EIIC FR729_08710 PF01026 TatD related DNase FR729_08715 PF12169 DNA polymerase III subunits gamma and tau domain III FR729_08720 PF02223 Thymidylate kinase FR729_08725 PF02618 YceG-like family FR729_08730 PF01063 Amino-transferase class IV FR729_08735 PF02801 Beta-ketoacyl synthase, C-terminal domain FR729_08735 PF00109 Beta-ketoacyl synthase, N-terminal domain FR729_08740 PF00550 Phosphopantetheine attachment site FR729_08750 PF00698 Acyl transferase domain FR729_08755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FR729_08755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FR729_08760 PF02504 Fatty acid synthesis protein FR729_08765 PF01783 Ribosomal L32p protein family FR729_08770 PF02620 Large ribosomal RNA subunit accumulation protein YceD FR729_08775 PF02545 Maf-like protein FR729_08780 PF00849 RNA pseudouridylate synthase FR729_08780 PF01479 S4 domain FR729_08790 PF12111 Polyribonucleotide phosphorylase C terminal FR729_08790 PF00575 S1 RNA binding domain FR729_08790 PF10150 Ribonuclease E/G family FR729_08800 PF01740 STAS domain FR729_08800 PF00916 Sulfate permease family FR729_08805 PF01451 Low molecular weight phosphotyrosine protein phosphatase FR729_08810 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP FR729_08810 PF12557 Cob(I)alamin adenosyltransferase N terminal FR729_08820 PF00485 Phosphoribulokinase / Uridine kinase family FR729_08825 PF10609 NUBPL iron-transfer P-loop NTPase FR729_08830 PF01588 Putative tRNA binding domain FR729_08830 PF09334 tRNA synthetases class I (M) FR729_08840 PF07840 FadR C-terminal domain FR729_08840 PF00392 Bacterial regulatory proteins, gntR family FR729_08845 PF06450 Bacterial Na+/H+ antiporter B (NhaB) FR729_08850 PF02600 Disulfide bond formation protein DsbB FR729_08855 PF03695 Uncharacterised protein family (UPF0149) FR729_08855 PF02810 SEC-C motif FR729_08860 PF01207 Dihydrouridine synthase (Dus) FR729_08865 PF00990 Diguanylate cyclase, GGDEF domain FR729_08865 PF17158 Membrane-associated sensor, integral membrane domain FR729_08870 PF02903 Alpha amylase, N-terminal ig-like domain FR729_08870 PF00128 Alpha amylase, catalytic domain FR729_08875 PF00005 ABC transporter FR729_08880 PF02653 Branched-chain amino acid transport system / permease component FR729_08890 PF04217 Protein of unknown function, DUF412 FR729_08895 PF00871 Acetokinase family FR729_08900 PF07085 DRTGG domain FR729_08900 PF01515 Phosphate acetyl/butaryl transferase FR729_08910 PF13409 Glutathione S-transferase, N-terminal domain FR729_08915 PF00005 ABC transporter FR729_08915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_08920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_08920 PF00005 ABC transporter FR729_08925 PF00528 Binding-protein-dependent transport system inner membrane component FR729_08925 PF12911 N-terminal TM domain of oligopeptide transport permease C FR729_08930 PF00528 Binding-protein-dependent transport system inner membrane component FR729_08935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_08940 PF02391 MoaE protein FR729_08945 PF02597 ThiS family FR729_08950 PF01967 MoaC family FR729_08955 PF00994 Probable molybdopterin binding domain FR729_08960 PF06463 Molybdenum Cofactor Synthesis C FR729_08960 PF04055 Radical SAM superfamily FR729_08965 PF01933 Uncharacterised protein family UPF0052 FR729_08970 PF01627 Hpt domain FR729_08975 PF02954 Bacterial regulatory protein, Fis family FR729_08975 PF00072 Response regulator receiver domain FR729_08975 PF00158 Sigma-54 interaction domain FR729_08980 PF17757 UvrB interaction domain FR729_08980 PF12344 Ultra-violet resistance protein B FR729_08980 PF04851 Type III restriction enzyme, res subunit FR729_08980 PF00271 Helicase conserved C-terminal domain FR729_08980 PF02151 UvrB/uvrC motif FR729_08990 PF02901 Pyruvate formate lyase-like FR729_08990 PF01228 Glycine radical FR729_08995 PF02508 Rnf-Nqr subunit, membrane protein FR729_09000 PF04060 Putative Fe-S cluster FR729_09005 PF10531 SLBB domain FR729_09005 PF13375 RnfC Barrel sandwich hybrid domain FR729_09005 PF12838 4Fe-4S dicluster domain FR729_09005 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FR729_09010 PF03116 NQR2, RnfD, RnfE family FR729_09015 PF04205 FMN-binding domain FR729_09020 PF02508 Rnf-Nqr subunit, membrane protein FR729_09025 PF00633 Helix-hairpin-helix motif FR729_09025 PF10576 Iron-sulfur binding domain of endonuclease III FR729_09025 PF00730 HhH-GPD superfamily base excision DNA repair protein FR729_09030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FR729_09035 PF10952 Protein of unknown function (DUF2753) FR729_09040 PF18393 MotY N-terminal domain FR729_09040 PF00691 OmpA family FR729_09050 PF00929 Exonuclease FR729_09055 PF03553 Na+/H+ antiporter family FR729_09055 PF13726 Na+-H+ antiporter family FR729_09065 PF00462 Glutaredoxin FR729_09070 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FR729_09070 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FR729_09085 PF00171 Aldehyde dehydrogenase family FR729_09085 PF00465 Iron-containing alcohol dehydrogenase FR729_09090 PF01914 MarC family integral membrane protein FR729_09095 PF00027 Cyclic nucleotide-binding domain FR729_09095 PF00520 Ion transport protein FR729_09100 PF01118 Semialdehyde dehydrogenase, NAD binding domain FR729_09100 PF02774 Semialdehyde dehydrogenase, dimerisation domain FR729_09105 PF03553 Na+/H+ antiporter family FR729_09120 PF04245 37-kD nucleoid-associated bacterial protein FR729_09125 PF07208 Protein of unknown function (DUF1414) FR729_09130 PF11893 Domain of unknown function (DUF3413) FR729_09130 PF00884 Sulfatase FR729_09140 PF00850 Histone deacetylase domain FR729_09145 PF00106 short chain dehydrogenase FR729_09155 PF01751 Toprim domain FR729_09155 PF01131 DNA topoisomerase FR729_09160 PF00881 Nitroreductase family FR729_09170 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_09170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FR729_09175 PF01343 Peptidase family S49 FR729_09180 PF17763 Glutaminase/Asparaginase C-terminal domain FR729_09180 PF00710 Asparaginase, N-terminal FR729_09185 PF07023 Protein of unknown function (DUF1315) FR729_09195 PF01641 SelR domain FR729_09200 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FR729_09200 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FR729_09205 PF01263 Aldose 1-epimerase FR729_09210 PF08447 PAS fold FR729_09210 PF13426 PAS domain FR729_09210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_09215 PF13847 Methyltransferase domain FR729_09235 PF00245 Alkaline phosphatase FR729_09245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FR729_09250 PF03992 Antibiotic biosynthesis monooxygenase FR729_09255 PF05552 Conserved TM helix FR729_09255 PF00924 Mechanosensitive ion channel FR729_09260 PF03692 Putative zinc- or iron-chelating domain FR729_09265 PF04226 Transglycosylase associated protein FR729_09270 PF03692 Putative zinc- or iron-chelating domain FR729_09275 PF00230 Major intrinsic protein FR729_09280 PF02132 RecR protein FR729_09280 PF13662 Toprim domain FR729_09285 PF02575 YbaB/EbfC DNA-binding family FR729_09290 PF12170 DNA polymerase III tau subunit V interacting with alpha FR729_09290 PF12169 DNA polymerase III subunits gamma and tau domain III FR729_09290 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FR729_09295 PF00156 Phosphoribosyl transferase domain FR729_09300 PF04304 Protein of unknown function (DUF454) FR729_09310 PF00072 Response regulator receiver domain FR729_09315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_09315 PF03466 LysR substrate binding domain FR729_09320 PF00156 Phosphoribosyl transferase domain FR729_09325 PF02674 Colicin V production protein FR729_09330 PF05036 Sporulation related domain FR729_09335 PF08245 Mur ligase middle domain FR729_09335 PF02875 Mur ligase family, glutamate ligase domain FR729_09340 PF01039 Carboxyl transferase domain FR729_09340 PF17848 Acetyl-coA carboxylase zinc finger domain FR729_09350 PF01416 tRNA pseudouridine synthase FR729_09360 PF02774 Semialdehyde dehydrogenase, dimerisation domain FR729_09360 PF01118 Semialdehyde dehydrogenase, NAD binding domain FR729_09365 PF11890 Domain of unknown function (DUF3410) FR729_09365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FR729_09365 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FR729_09375 PF00109 Beta-ketoacyl synthase, N-terminal domain FR729_09375 PF02801 Beta-ketoacyl synthase, C-terminal domain FR729_09380 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FR729_09380 PF01266 FAD dependent oxidoreductase FR729_09385 PF03358 NADPH-dependent FMN reductase FR729_09395 PF08891 YfcL protein FR729_09400 PF04315 Elongation factor P hydroxylase FR729_09410 PF03458 UPF0126 domain FR729_09415 PF01264 Chorismate synthase FR729_09420 PF05175 Methyltransferase small domain FR729_09425 PF01713 Smr domain FR729_09430 PF00300 Histidine phosphatase superfamily (branch 1) FR729_09435 PF05193 Peptidase M16 inactive domain FR729_09435 PF16187 Middle or third domain of peptidase_M16 FR729_09435 PF00675 Insulinase (Peptidase family M16) FR729_09445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FR729_09445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FR729_09445 PF00378 Enoyl-CoA hydratase/isomerase FR729_09450 PF00108 Thiolase, N-terminal domain FR729_09450 PF02803 Thiolase, C-terminal domain FR729_09460 PF08281 Sigma-70, region 4 FR729_09460 PF04542 Sigma-70 region 2 FR729_09470 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FR729_09475 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FR729_09480 PF04333 MlaA lipoprotein FR729_09485 PF03918 Cytochrome C biogenesis protein FR729_09490 PF03918 Cytochrome C biogenesis protein FR729_09495 PF08534 Redoxin FR729_09500 PF01578 Cytochrome C assembly protein FR729_09500 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FR729_09505 PF03100 CcmE FR729_09510 PF04995 Heme exporter protein D (CcmD) FR729_09515 PF01578 Cytochrome C assembly protein FR729_09520 PF03379 CcmB protein FR729_09525 PF00005 ABC transporter FR729_09535 PF01584 CheW-like domain FR729_09545 PF13614 AAA domain FR729_09550 PF01339 CheB methylesterase FR729_09550 PF00072 Response regulator receiver domain FR729_09555 PF00072 Response regulator receiver domain FR729_09555 PF01627 Hpt domain FR729_09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_09555 PF01584 CheW-like domain FR729_09555 PF02895 Signal transducing histidine kinase, homodimeric domain FR729_09560 PF04344 Chemotaxis phosphatase, CheZ FR729_09565 PF00072 Response regulator receiver domain FR729_09570 PF04542 Sigma-70 region 2 FR729_09570 PF04545 Sigma-70, region 4 FR729_09570 PF04539 Sigma-70 region 3 FR729_09575 PF10609 NUBPL iron-transfer P-loop NTPase FR729_09580 PF00448 SRP54-type protein, GTPase domain FR729_09585 PF00771 FHIPEP family FR729_09590 PF01312 FlhB HrpN YscU SpaS Family FR729_09595 PF01311 Bacterial export proteins, family 1 FR729_09600 PF01313 Bacterial export proteins, family 3 FR729_09605 PF00813 FliP family FR729_09610 PF04347 Flagellar biosynthesis protein, FliO FR729_09615 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FR729_09620 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FR729_09620 PF02154 Flagellar motor switch protein FliM FR729_09645 PF18269 T3SS EscN ATPase C-terminal domain FR729_09645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FR729_09655 PF14841 FliG middle domain FR729_09655 PF01706 FliG C-terminal domain FR729_09655 PF14842 FliG N-terminal domain FR729_09660 PF01514 Secretory protein of YscJ/FliF family FR729_09660 PF08345 Flagellar M-ring protein C-terminal FR729_09665 PF02049 Flagellar hook-basal body complex protein FliE FR729_09670 PF00072 Response regulator receiver domain FR729_09670 PF00158 Sigma-54 interaction domain FR729_09670 PF02954 Bacterial regulatory protein, Fis family FR729_09675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_09675 PF00512 His Kinase A (phospho-acceptor) domain FR729_09680 PF02954 Bacterial regulatory protein, Fis family FR729_09680 PF06490 Flagellar regulatory protein FleQ FR729_09680 PF00158 Sigma-54 interaction domain FR729_09685 PF02561 Flagellar protein FliS FR729_09695 PF07195 Flagellar hook-associated protein 2 C-terminus FR729_09695 PF07196 Flagellin hook IN motif FR729_09695 PF02465 Flagellar hook-associated protein 2 N-terminus FR729_09700 PF03646 FlaG protein FR729_09705 PF00700 Bacterial flagellin C-terminal helical region FR729_09705 PF07196 Flagellin hook IN motif FR729_09705 PF00669 Bacterial flagellin N-terminal helical region FR729_09710 PF00669 Bacterial flagellin N-terminal helical region FR729_09710 PF07196 Flagellin hook IN motif FR729_09710 PF00700 Bacterial flagellin C-terminal helical region FR729_09720 PF00700 Bacterial flagellin C-terminal helical region FR729_09720 PF00669 Bacterial flagellin N-terminal helical region FR729_09720 PF07196 Flagellin hook IN motif FR729_09725 PF04261 Dyp-type peroxidase family FR729_09730 PF11143 Protein of unknown function (DUF2919) FR729_09750 PF03960 ArsC family FR729_09755 PF07687 Peptidase dimerisation domain FR729_09755 PF01546 Peptidase family M20/M25/M40 FR729_09775 PF00701 Dihydrodipicolinate synthetase family FR729_09785 PF00578 AhpC/TSA family FR729_09790 PF01594 AI-2E family transporter FR729_09800 PF13181 Tetratricopeptide repeat FR729_09800 PF01435 Peptidase family M48 FR729_09805 PF03960 ArsC family FR729_09810 PF03358 NADPH-dependent FMN reductase FR729_09825 PF00860 Permease family FR729_09840 PF02769 AIR synthase related protein, C-terminal domain FR729_09840 PF00586 AIR synthase related protein, N-terminal domain FR729_09845 PF00551 Formyl transferase FR729_09850 PF13230 Glutamine amidotransferases class-II FR729_09855 PF13580 SIS domain FR729_09860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FR729_09860 PF02770 Acyl-CoA dehydrogenase, middle domain FR729_09860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FR729_09860 PF09317 Domain of unknown function (DUF1974) FR729_09865 PF01740 STAS domain FR729_09865 PF00916 Sulfate permease family FR729_09890 PF00929 Exonuclease FR729_09895 PF00075 RNase H FR729_09900 PF08241 Methyltransferase domain FR729_09905 PF00753 Metallo-beta-lactamase superfamily FR729_09905 PF16123 Hydroxyacylglutathione hydrolase C-terminus FR729_09910 PF01476 LysM domain FR729_09910 PF01464 Transglycosylase SLT domain FR729_09920 PF03372 Endonuclease/Exonuclease/phosphatase family FR729_09925 PF00543 Nitrogen regulatory protein P-II FR729_09930 PF00034 Cytochrome c FR729_09935 PF11734 TilS substrate C-terminal domain FR729_09935 PF01171 PP-loop family FR729_09935 PF09179 TilS substrate binding domain FR729_09940 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FR729_09945 PF01336 OB-fold nucleic acid binding domain FR729_09945 PF07733 Bacterial DNA polymerase III alpha NTPase domain FR729_09945 PF02811 PHP domain FR729_09945 PF14579 Helix-hairpin-helix motif FR729_09945 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FR729_09950 PF01351 Ribonuclease HII FR729_09955 PF02684 Lipid-A-disaccharide synthetase FR729_09960 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FR729_09960 PF00132 Bacterial transferase hexapeptide (six repeats) FR729_09965 PF07977 FabA-like domain FR729_09970 PF00132 Bacterial transferase hexapeptide (six repeats) FR729_09970 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FR729_09975 PF03938 Outer membrane protein (OmpH-like) FR729_09980 PF01103 Surface antigen FR729_09980 PF07244 Surface antigen variable number repeat FR729_09985 PF02163 Peptidase family M50 FR729_09985 PF17820 PDZ domain FR729_09990 PF13288 DXP reductoisomerase C-terminal domain FR729_09990 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FR729_09990 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FR729_10000 PF01255 Putative undecaprenyl diphosphate synthase FR729_10005 PF01765 Ribosome recycling factor FR729_10010 PF00696 Amino acid kinase family FR729_10015 PF00889 Elongation factor TS FR729_10020 PF00318 Ribosomal protein S2 FR729_10025 PF00557 Metallopeptidase family M24 FR729_10030 PF01966 HD domain FR729_10030 PF08335 GlnD PII-uridylyltransferase FR729_10030 PF01842 ACT domain FR729_10030 PF01909 Nucleotidyltransferase domain FR729_10035 PF11944 Protein of unknown function (DUF3461) FR729_10040 PF00849 RNA pseudouridylate synthase FR729_10045 PF04287 tRNA pseudouridine synthase C FR729_10075 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FR729_10080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FR729_10080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FR729_10085 PF01370 NAD dependent epimerase/dehydratase family FR729_10110 PF03806 AbgT putative transporter family FR729_10115 PF00444 Ribosomal protein L36 FR729_10120 PF01197 Ribosomal protein L31 FR729_10125 PF18389 TrmO C-terminal domain FR729_10125 PF01980 tRNA-methyltransferase O FR729_10130 PF04073 Aminoacyl-tRNA editing domain FR729_10130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FR729_10130 PF03129 Anticodon binding domain FR729_10140 PF06786 Uncharacterised protein family (UPF0253) FR729_10150 PF00209 Sodium:neurotransmitter symporter family FR729_10155 PF06483 Chitinase C FR729_10155 PF00704 Glycosyl hydrolases family 18 FR729_10165 PF03449 Transcription elongation factor, N-terminal FR729_10165 PF01272 Transcription elongation factor, GreA/GreB, C-term FR729_10170 PF00270 DEAD/DEAH box helicase FR729_10170 PF00271 Helicase conserved C-terminal domain FR729_10170 PF00570 HRDC domain FR729_10170 PF16124 RecQ zinc-binding FR729_10170 PF09382 RQC domain FR729_10175 PF00817 impB/mucB/samB family FR729_10175 PF11799 impB/mucB/samB family C-terminal domain FR729_10175 PF11798 IMS family HHH motif FR729_10180 PF00817 impB/mucB/samB family FR729_10180 PF11799 impB/mucB/samB family C-terminal domain FR729_10180 PF11798 IMS family HHH motif FR729_10200 PF02384 N-6 DNA Methylase FR729_10200 PF12161 HsdM N-terminal domain FR729_10210 PF02463 RecF/RecN/SMC N terminal domain FR729_10220 PF18766 SWI2/SNF2 ATPase FR729_10220 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FR729_10220 PF11867 Domain of unknown function (DUF3387) FR729_10235 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain FR729_10235 PF14490 Helix-hairpin-helix containing domain FR729_10235 PF13538 UvrD-like helicase C-terminal domain FR729_10270 PF00990 Diguanylate cyclase, GGDEF domain FR729_10270 PF00072 Response regulator receiver domain FR729_10280 PF02424 ApbE family FR729_10285 PF00111 2Fe-2S iron-sulfur cluster binding domain FR729_10285 PF00175 Oxidoreductase NAD-binding domain FR729_10285 PF00970 Oxidoreductase FAD-binding domain FR729_10290 PF02508 Rnf-Nqr subunit, membrane protein FR729_10295 PF02508 Rnf-Nqr subunit, membrane protein FR729_10300 PF04205 FMN-binding domain FR729_10305 PF03116 NQR2, RnfD, RnfE family FR729_10310 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) FR729_10310 PF11973 NQRA C-terminal domain FR729_10315 PF01722 BolA-like protein FR729_10320 PF05175 Methyltransferase small domain FR729_10325 PF08139 Prokaryotic membrane lipoprotein lipid attachment site FR729_10325 PF03923 Uncharacterized lipoprotein FR729_10330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FR729_10335 PF07690 Major Facilitator Superfamily FR729_10345 PF04545 Sigma-70, region 4 FR729_10345 PF04542 Sigma-70 region 2 FR729_10365 PF03502 Nucleoside-specific channel-forming protein, Tsx FR729_10370 PF08546 Ketopantoate reductase PanE/ApbA C terminal FR729_10370 PF02558 Ketopantoate reductase PanE/ApbA FR729_10375 PF01965 DJ-1/PfpI family FR729_10380 PF00266 Aminotransferase class-V FR729_10385 PF00990 Diguanylate cyclase, GGDEF domain FR729_10385 PF17158 Membrane-associated sensor, integral membrane domain FR729_10390 PF02657 Fe-S metabolism associated domain FR729_10395 PF00899 ThiF family FR729_10400 PF03562 MltA specific insert domain FR729_10400 PF06725 3D domain FR729_10415 PF00583 Acetyltransferase (GNAT) family FR729_10415 PF00696 Amino acid kinase family FR729_10435 PF13538 UvrD-like helicase C-terminal domain FR729_10440 PF12705 PD-(D/E)XK nuclease superfamily FR729_10440 PF13361 UvrD-like helicase C-terminal domain FR729_10440 PF00580 UvrD/REP helicase N-terminal domain FR729_10450 PF17946 RecC C-terminal domain FR729_10455 PF00884 Sulfatase FR729_10455 PF11893 Domain of unknown function (DUF3413) FR729_10465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_10465 PF03466 LysR substrate binding domain FR729_10470 PF07130 YebG protein FR729_10485 PF14602 Hexapeptide repeat of succinyl-transferase FR729_10485 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle FR729_10490 PF03009 Glycerophosphoryl diester phosphodiesterase family FR729_10495 PF07690 Major Facilitator Superfamily FR729_10505 PF00230 Major intrinsic protein FR729_10510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FR729_10510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FR729_10515 PF08220 DeoR-like helix-turn-helix domain FR729_10515 PF00455 DeoR C terminal sensor domain FR729_10520 PF01266 FAD dependent oxidoreductase FR729_10520 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FR729_10525 PF01544 CorA-like Mg2+ transporter protein FR729_10545 PF00356 Bacterial regulatory proteins, lacI family FR729_10550 PF03466 LysR substrate binding domain FR729_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_10580 PF00437 Type II/IV secretion system protein FR729_10610 PF00263 Bacterial type II and III secretion system protein FR729_10610 PF04972 BON domain FR729_10610 PF13629 Pilus formation protein N terminal region FR729_10635 PF12833 Helix-turn-helix domain FR729_10635 PF02805 Metal binding domain of Ada FR729_10640 PF00501 AMP-binding enzyme FR729_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_10650 PF03466 LysR substrate binding domain FR729_10655 PF03764 Elongation factor G, domain IV FR729_10655 PF00009 Elongation factor Tu GTP binding domain FR729_10655 PF03144 Elongation factor Tu domain 2 FR729_10655 PF00679 Elongation factor G C-terminus FR729_10655 PF14492 Elongation Factor G, domain II FR729_10660 PF18073 Rubredoxin metal binding domain FR729_10670 PF18429 Domain of unknown function (DUF5609) FR729_10680 PF01048 Phosphorylase superfamily FR729_10685 PF01676 Metalloenzyme superfamily FR729_10690 PF02885 Glycosyl transferase family, helical bundle domain FR729_10690 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain FR729_10690 PF00591 Glycosyl transferase family, a/b domain FR729_10695 PF01791 DeoC/LacD family aldolase FR729_10700 PF01773 Na+ dependent nucleoside transporter N-terminus FR729_10700 PF07670 Nucleoside recognition FR729_10700 PF07662 Na+ dependent nucleoside transporter C-terminus FR729_10705 PF01026 TatD related DNase FR729_10715 PF16658 Class II release factor RF3, C-terminal domain FR729_10715 PF00009 Elongation factor Tu GTP binding domain FR729_10715 PF03144 Elongation factor Tu domain 2 FR729_10735 PF13508 Acetyltransferase (GNAT) domain FR729_10740 PF02036 SCP-2 sterol transfer family FR729_10750 PF03707 Bacterial signalling protein N terminal repeat FR729_10750 PF00990 Diguanylate cyclase, GGDEF domain FR729_10750 PF00563 EAL domain FR729_10755 PF01136 Peptidase family U32 FR729_10760 PF01136 Peptidase family U32 FR729_10765 PF01554 MatE FR729_10775 PF13181 Tetratricopeptide repeat FR729_10775 PF07719 Tetratricopeptide repeat FR729_10780 PF03725 3' exoribonuclease family, domain 2 FR729_10780 PF01138 3' exoribonuclease family, domain 1 FR729_10780 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FR729_10780 PF00575 S1 RNA binding domain FR729_10780 PF00013 KH domain FR729_10785 PF00312 Ribosomal protein S15 FR729_10790 PF01509 TruB family pseudouridylate synthase (N terminal domain) FR729_10790 PF09157 Pseudouridine synthase II TruB, C-terminal FR729_10790 PF16198 tRNA pseudouridylate synthase B C-terminal domain FR729_10795 PF02033 Ribosome-binding factor A FR729_10800 PF04760 Translation initiation factor IF-2, N-terminal region FR729_10800 PF11987 Translation-initiation factor 2 FR729_10800 PF00009 Elongation factor Tu GTP binding domain FR729_10800 PF08364 Bacterial translation initiation factor IF-2 associated region FR729_10805 PF00575 S1 RNA binding domain FR729_10805 PF08529 NusA N-terminal domain FR729_10805 PF13184 NusA-like KH domain FR729_10810 PF02576 RimP N-terminal domain FR729_10810 PF17384 RimP C-terminal SH3 domain FR729_10825 PF03840 Preprotein translocase SecG subunit FR729_10835 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FR729_10835 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FR729_10835 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FR729_10835 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FR729_10840 PF00809 Pterin binding enzyme FR729_10845 PF01434 Peptidase family M41 FR729_10845 PF06480 FtsH Extracellular FR729_10845 PF00004 ATPase family associated with various cellular activities (AAA) FR729_10845 PF17862 AAA+ lid domain FR729_10850 PF01728 FtsJ-like methyltransferase FR729_10855 PF01985 CRS1 / YhbY (CRM) domain FR729_10860 PF03449 Transcription elongation factor, N-terminal FR729_10860 PF01272 Transcription elongation factor, GreA/GreB, C-term FR729_10865 PF13609 Gram-negative porin FR729_10870 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family FR729_10880 PF00579 tRNA synthetases class I (W and Y) FR729_10885 PF01476 LysM domain FR729_10885 PF01551 Peptidase family M23 FR729_10885 PF08525 Opacity-associated protein A N-terminal motif FR729_10890 PF00873 AcrB/AcrD/AcrF family FR729_10900 PF01521 Iron-sulphur cluster biosynthesis FR729_10905 PF00202 Aminotransferase class-III FR729_10910 PF01594 AI-2E family transporter FR729_10915 PF05175 Methyltransferase small domain FR729_10915 PF08468 Methyltransferase small domain N-terminal FR729_10920 PF00072 Response regulator receiver domain FR729_10920 PF09308 LuxQ, periplasmic FR729_10920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_10920 PF00512 His Kinase A (phospho-acceptor) domain FR729_10925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_10930 PF00528 Binding-protein-dependent transport system inner membrane component FR729_10935 PF12911 N-terminal TM domain of oligopeptide transport permease C FR729_10935 PF00528 Binding-protein-dependent transport system inner membrane component FR729_10940 PF00005 ABC transporter FR729_10940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_10945 PF00005 ABC transporter FR729_10945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_10955 PF01869 BadF/BadG/BcrA/BcrD ATPase family FR729_10960 PF02838 Glycosyl hydrolase family 20, domain 2 FR729_10960 PF00728 Glycosyl hydrolase family 20, catalytic domain FR729_10965 PF06165 Glycosyltransferase family 36 FR729_10965 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain FR729_10970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FR729_10970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FR729_10970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FR729_10970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FR729_10975 PF08402 TOBE domain FR729_10975 PF00005 ABC transporter FR729_10985 PF13416 Bacterial extracellular solute-binding protein FR729_10990 PF00909 Ammonium Transporter Family FR729_10995 PF00543 Nitrogen regulatory protein P-II FR729_11000 PF06062 Uncharacterised protein family (UPF0231) FR729_11005 PF00330 Aconitase family (aconitate hydratase) FR729_11005 PF06434 Aconitate hydratase 2 N-terminus FR729_11005 PF11791 Aconitate B N-terminal domain FR729_11010 PF01734 Patatin-like phospholipase FR729_11015 PF00905 Penicillin binding protein transpeptidase domain FR729_11015 PF00912 Transglycosylase FR729_11015 PF14814 Bifunctional transglycosylase second domain FR729_11020 PF08482 ATP-dependent helicase C-terminal FR729_11020 PF00270 DEAD/DEAH box helicase FR729_11020 PF04408 Helicase associated domain (HA2) FR729_11020 PF00271 Helicase conserved C-terminal domain FR729_11025 PF03749 Sugar fermentation stimulation protein RE domain FR729_11025 PF17746 SfsA N-terminal OB domain FR729_11030 PF01258 Prokaryotic dksA/traR C4-type zinc finger FR729_11035 PF00749 tRNA synthetases class I (E and Q), catalytic domain FR729_11040 PF12627 Probable RNA and SrmB- binding site of polymerase A FR729_11040 PF12626 Polymerase A arginine-rich C-terminus FR729_11040 PF01743 Poly A polymerase head domain FR729_11045 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FR729_11050 PF02548 Ketopantoate hydroxymethyltransferase FR729_11055 PF02569 Pantoate-beta-alanine ligase FR729_11060 PF03279 Bacterial lipid A biosynthesis acyltransferase FR729_11070 PF01061 ABC-2 type transporter FR729_11075 PF00005 ABC transporter FR729_11080 PF01740 STAS domain FR729_11080 PF00916 Sulfate permease family FR729_11085 PF00484 Carbonic anhydrase FR729_11090 PF00156 Phosphoribosyl transferase domain FR729_11095 PF00440 Bacterial regulatory proteins, tetR family FR729_11100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FR729_11100 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_11105 PF02817 e3 binding domain FR729_11105 PF00364 Biotin-requiring enzyme FR729_11105 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FR729_11110 PF17831 Pyruvate dehydrogenase E1 component middle domain FR729_11110 PF00456 Transketolase, thiamine diphosphate binding domain FR729_11115 PF07729 FCD domain FR729_11115 PF00392 Bacterial regulatory proteins, gntR family FR729_11120 PF01510 N-acetylmuramoyl-L-alanine amidase FR729_11125 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FR729_11125 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FR729_11130 PF00114 Pilin (bacterial filament) FR729_11130 PF07963 Prokaryotic N-terminal methylation motif FR729_11135 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FR729_11135 PF00437 Type II/IV secretion system protein FR729_11140 PF00482 Type II secretion system (T2SS), protein F FR729_11145 PF01478 Type IV leader peptidase family FR729_11145 PF06750 Bacterial Peptidase A24 N-terminal domain FR729_11150 PF01121 Dephospho-CoA kinase FR729_11155 PF07072 Cell division protein FR729_11160 PF03884 DNA gyrase inhibitor YacG FR729_11165 PF01245 Ribosomal protein L19 FR729_11170 PF01746 tRNA (Guanine-1)-methyltransferase FR729_11175 PF05239 PRC-barrel domain FR729_11175 PF01782 RimM N-terminal domain FR729_11180 PF00886 Ribosomal protein S16 FR729_11185 PF02978 Signal peptide binding domain FR729_11185 PF02881 SRP54-type protein, helical bundle domain FR729_11185 PF00448 SRP54-type protein, GTPase domain FR729_11190 PF01578 Cytochrome C assembly protein FR729_11195 PF00571 CBS domain FR729_11195 PF03471 Transporter associated domain FR729_11195 PF01595 Cyclin M transmembrane N-terminal domain FR729_11200 PF02664 S-Ribosylhomocysteinase (LuxS) FR729_11210 PF04262 Glutamate-cysteine ligase FR729_11215 PF05193 Peptidase M16 inactive domain FR729_11215 PF00675 Insulinase (Peptidase family M16) FR729_11220 PF09335 SNARE associated Golgi protein FR729_11230 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit FR729_11235 PF02436 Conserved carboxylase domain FR729_11235 PF00364 Biotin-requiring enzyme FR729_11235 PF00682 HMGL-like FR729_11240 PF04277 Oxaloacetate decarboxylase, gamma chain FR729_11295 PF02599 Global regulator protein family FR729_11300 PF01842 ACT domain FR729_11300 PF13840 ACT domain FR729_11300 PF00696 Amino acid kinase family FR729_11305 PF02272 DHHA1 domain FR729_11305 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FR729_11305 PF01411 tRNA synthetases class II (A) FR729_11310 PF02631 RecX family FR729_11320 PF00154 recA bacterial DNA recombination protein FR729_11325 PF02464 Competence-damaged protein FR729_11330 PF05192 MutS domain III FR729_11330 PF00488 MutS domain V FR729_11330 PF01624 MutS domain I FR729_11330 PF05188 MutS domain II FR729_11330 PF05190 MutS family domain IV FR729_11335 PF00140 Sigma-70 factor, region 1.2 FR729_11335 PF04545 Sigma-70, region 4 FR729_11335 PF04542 Sigma-70 region 2 FR729_11335 PF04539 Sigma-70 region 3 FR729_11340 PF01551 Peptidase family M23 FR729_11340 PF01476 LysM domain FR729_11350 PF01975 Survival protein SurE FR729_11355 PF01142 tRNA pseudouridine synthase D (TruD) FR729_11360 PF02542 YgbB family FR729_11365 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FR729_11370 PF04977 Septum formation initiator FR729_11375 PF00113 Enolase, C-terminal TIM barrel domain FR729_11375 PF03952 Enolase, N-terminal domain FR729_11380 PF06418 CTP synthase N-terminus FR729_11380 PF00117 Glutamine amidotransferase class-I FR729_11385 PF03819 MazG nucleotide pyrophosphohydrolase domain FR729_11390 PF02824 TGS domain FR729_11390 PF04607 Region found in RelA / SpoT proteins FR729_11390 PF13291 ACT domain FR729_11400 PF05958 tRNA (Uracil-5-)-methyltransferase FR729_11400 PF01938 TRAM domain FR729_11410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_11410 PF00512 His Kinase A (phospho-acceptor) domain FR729_11410 PF01627 Hpt domain FR729_11410 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FR729_11410 PF00072 Response regulator receiver domain FR729_11410 PF00672 HAMP domain FR729_11415 PF01648 4'-phosphopantetheinyl transferase superfamily FR729_11420 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FR729_11425 PF11967 Recombination protein O N terminal FR729_11425 PF02565 Recombination protein O C terminal FR729_11430 PF07650 KH domain FR729_11430 PF01926 50S ribosome-binding GTPase FR729_11435 PF00035 Double-stranded RNA binding motif FR729_11435 PF14622 Ribonuclease-III-like FR729_11440 PF10502 Signal peptidase, peptidase S26 FR729_11445 PF03144 Elongation factor Tu domain 2 FR729_11445 PF06421 GTP-binding protein LepA C-terminus FR729_11445 PF00009 Elongation factor Tu GTP binding domain FR729_11445 PF00679 Elongation factor G C-terminus FR729_11455 PF03888 MucB/RseB N-terminal domain FR729_11455 PF17188 MucB/RseB C-terminal domain FR729_11460 PF03873 Anti sigma-E protein RseA, C-terminal domain FR729_11460 PF03872 Anti sigma-E protein RseA, N-terminal domain FR729_11465 PF08281 Sigma-70, region 4 FR729_11465 PF04542 Sigma-70 region 2 FR729_11475 PF00890 FAD binding domain FR729_11475 PF02910 Fumarate reductase flavoprotein C-term FR729_11485 PF03937 Flavinator of succinate dehydrogenase FR729_11505 PF01494 FAD binding domain FR729_11510 PF01494 FAD binding domain FR729_11515 PF03695 Uncharacterised protein family (UPF0149) FR729_11525 PF05164 Cell division protein ZapA FR729_11535 PF01812 5-formyltetrahydrofolate cyclo-ligase family FR729_11540 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FR729_11545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FR729_11545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FR729_11545 PF01842 ACT domain FR729_11550 PF04402 Protein of unknown function (DUF541) FR729_11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_11555 PF03466 LysR substrate binding domain FR729_11560 PF01810 LysE type translocator FR729_11570 PF00924 Mechanosensitive ion channel FR729_11570 PF05552 Conserved TM helix FR729_11575 PF01116 Fructose-bisphosphate aldolase class-II FR729_11580 PF00162 Phosphoglycerate kinase FR729_11585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FR729_11585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FR729_11590 PF07715 TonB-dependent Receptor Plug Domain FR729_11590 PF00593 TonB dependent receptor FR729_11595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_11595 PF03466 LysR substrate binding domain FR729_11600 PF00456 Transketolase, thiamine diphosphate binding domain FR729_11600 PF02780 Transketolase, C-terminal domain FR729_11600 PF02779 Transketolase, pyrimidine binding domain FR729_11610 PF00438 S-adenosylmethionine synthetase, N-terminal domain FR729_11610 PF02773 S-adenosylmethionine synthetase, C-terminal domain FR729_11610 PF02772 S-adenosylmethionine synthetase, central domain FR729_11620 PF10263 SprT-like family FR729_11620 PF17283 SprT-like zinc ribbon domain FR729_11625 PF04231 Endonuclease I FR729_11630 PF04452 RNA methyltransferase FR729_11635 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FR729_11635 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FR729_11640 PF02622 Uncharacterized ACR, COG1678 FR729_11645 PF03652 Holliday junction resolvase FR729_11650 PF00437 Type II/IV secretion system protein FR729_11655 PF00437 Type II/IV secretion system protein FR729_11660 PF01168 Alanine racemase, N-terminal domain FR729_11665 PF14748 Pyrroline-5-carboxylate reductase dimerisation FR729_11665 PF03807 NADP oxidoreductase coenzyme F420-dependent FR729_11670 PF02325 YGGT family FR729_11675 PF02594 Uncharacterised ACR, YggU family COG1872 FR729_11685 PF01725 Ham1 family FR729_11690 PF04055 Radical SAM superfamily FR729_11690 PF06969 HemN C-terminal domain FR729_11695 PF04960 Glutaminase FR729_11700 PF02086 D12 class N6 adenine-specific DNA methyltransferase FR729_11705 PF02390 Putative methyltransferase FR729_11710 PF14815 NUDIX domain FR729_11710 PF00730 HhH-GPD superfamily base excision DNA repair protein FR729_11710 PF00633 Helix-hairpin-helix motif FR729_11715 PF04362 Bacterial Fe(2+) trafficking FR729_11720 PF01464 Transglycosylase SLT domain FR729_11720 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain FR729_11790 PF00171 Aldehyde dehydrogenase family FR729_11845 PF04794 YdjC-like protein FR729_11850 PF11975 Family 4 glycosyl hydrolase C-terminal domain FR729_11850 PF02056 Family 4 glycosyl hydrolase FR729_11855 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit FR729_11860 PF02378 Phosphotransferase system, EIIC FR729_11865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FR729_11870 PF01522 Polysaccharide deacetylase FR729_11890 PF01555 DNA methylase FR729_11975 PF10011 Predicted membrane protein (DUF2254) FR729_11985 PF03739 Lipopolysaccharide export system permease LptF/LptG FR729_11990 PF03739 Lipopolysaccharide export system permease LptF/LptG FR729_11995 PF00883 Cytosol aminopeptidase family, catalytic domain FR729_11995 PF02789 Cytosol aminopeptidase family, N-terminal domain FR729_12000 PF04364 DNA polymerase III chi subunit, HolC FR729_12005 PF08264 Anticodon-binding domain of tRNA FR729_12005 PF10458 Valyl tRNA synthetase tRNA binding arm FR729_12005 PF00133 tRNA synthetases class I (I, L, M and V) FR729_12015 PF00583 Acetyltransferase (GNAT) family FR729_12025 PF06877 Regulator of ribonuclease activity B FR729_12035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FR729_12035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FR729_12045 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FR729_12045 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FR729_12050 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain FR729_12050 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain FR729_12055 PF01042 Endoribonuclease L-PSP FR729_12060 PF01553 Acyltransferase FR729_12065 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FR729_12070 PF01722 BolA-like protein FR729_12080 PF05494 MlaC protein FR729_12085 PF02470 MlaD protein FR729_12090 PF02405 Permease MlaE FR729_12095 PF00005 ABC transporter FR729_12100 PF01699 Sodium/calcium exchanger protein FR729_12105 PF00571 CBS domain FR729_12105 PF01380 SIS domain FR729_12115 PF03968 OstA-like protein FR729_12120 PF00005 ABC transporter FR729_12120 PF12399 Branched-chain amino acid ATP-binding cassette transporter FR729_12125 PF00309 Sigma-54 factor, Activator interacting domain (AID) FR729_12125 PF04963 Sigma-54 factor, core binding domain FR729_12125 PF04552 Sigma-54, DNA binding domain FR729_12130 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FR729_12135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FR729_12140 PF03668 P-loop ATPase protein family FR729_12145 PF00381 PTS HPr component phosphorylation site FR729_12150 PF01769 Divalent cation transporter FR729_12150 PF00571 CBS domain FR729_12150 PF03448 MgtE intracellular N domain FR729_12155 PF01523 Putative modulator of DNA gyrase FR729_12160 PF04751 Protein of unknown function (DUF615) FR729_12165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FR729_12165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FR729_12170 PF00849 RNA pseudouridylate synthase FR729_12180 PF18337 RapA N-terminal Tudor like domain FR729_12180 PF12137 RNA polymerase recycling family C-terminal FR729_12180 PF00271 Helicase conserved C-terminal domain FR729_12180 PF00176 SNF2 family N-terminal domain FR729_12180 PF18339 RapA N-terminal Tudor like domain 1 FR729_12185 PF13638 PIN domain FR729_12185 PF02562 PhoH-like protein FR729_12190 PF01523 Putative modulator of DNA gyrase FR729_12195 PF00795 Carbon-nitrogen hydrolase FR729_12200 PF13502 AsmA-like C-terminal region FR729_12200 PF13116 Protein of unknown function FR729_12205 PF00575 S1 RNA binding domain FR729_12205 PF10150 Ribonuclease E/G family FR729_12210 PF02545 Maf-like protein FR729_12215 PF04093 rod shape-determining protein MreD FR729_12220 PF04085 rod shape-determining protein MreC FR729_12260 PF08334 Type II secretion system (T2SS), protein G FR729_12260 PF07963 Prokaryotic N-terminal methylation motif FR729_12270 PF00482 Type II secretion system (T2SS), protein F FR729_12275 PF00437 Type II/IV secretion system protein FR729_12285 PF13401 AAA domain FR729_12285 PF01471 Putative peptidoglycan binding domain FR729_12290 PF00263 Bacterial type II and III secretion system protein FR729_12290 PF03958 Bacterial type II/III secretion system short domain FR729_12310 PF17157 Gammaproteobacterial periplasmic sensor domain FR729_12310 PF00563 EAL domain FR729_12310 PF00990 Diguanylate cyclase, GGDEF domain FR729_12315 PF00436 Single-strand binding protein family FR729_12320 PF00196 Bacterial regulatory proteins, luxR family FR729_12325 PF00483 Nucleotidyl transferase FR729_12330 PF17760 UvrA interaction domain FR729_12330 PF00005 ABC transporter FR729_12330 PF17755 UvrA DNA-binding domain FR729_12340 PF00266 Aminotransferase class-V FR729_12350 PF00696 Amino acid kinase family FR729_12350 PF01842 ACT domain FR729_12355 PF02574 Homocysteine S-methyltransferase FR729_12355 PF00809 Pterin binding enzyme FR729_12355 PF02965 Vitamin B12 dependent methionine synthase, activation domain FR729_12355 PF02607 B12 binding domain FR729_12355 PF02310 B12 binding domain FR729_12360 PF00999 Sodium/hydrogen exchanger family FR729_12420 PF01507 Phosphoadenosine phosphosulfate reductase family FR729_12425 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FR729_12425 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FR729_12430 PF00175 Oxidoreductase NAD-binding domain FR729_12430 PF00258 Flavodoxin FR729_12430 PF00667 FAD binding domain FR729_12450 PF01207 Dihydrouridine synthase (Dus) FR729_12455 PF01475 Ferric uptake regulator family FR729_12465 PF00342 Phosphoglucose isomerase FR729_12470 PF01894 Uncharacterised protein family UPF0047 FR729_12475 PF01168 Alanine racemase, N-terminal domain FR729_12475 PF00842 Alanine racemase, C-terminal domain FR729_12480 PF00772 DnaB-like helicase N terminal domain FR729_12480 PF03796 DnaB-like helicase C terminal domain FR729_12490 PF01281 Ribosomal protein L9, N-terminal domain FR729_12490 PF03948 Ribosomal protein L9, C-terminal domain FR729_12495 PF01084 Ribosomal protein S18 FR729_12500 PF00436 Single-strand binding protein family FR729_12505 PF01250 Ribosomal protein S6 FR729_12510 PF00834 Ribulose-phosphate 3 epimerase family FR729_12515 PF02086 D12 class N6 adenine-specific DNA methyltransferase FR729_12525 PF01761 3-dehydroquinate synthase FR729_12530 PF01202 Shikimate kinase FR729_12535 PF03958 Bacterial type II/III secretion system short domain FR729_12535 PF11741 AMIN domain FR729_12535 PF07660 Secretin and TonB N terminus short domain FR729_12535 PF00263 Bacterial type II and III secretion system protein FR729_12560 PF00905 Penicillin binding protein transpeptidase domain FR729_12560 PF00912 Transglycosylase FR729_12560 PF17092 Penicillin-binding protein OB-like domain FR729_12565 PF03466 LysR substrate binding domain FR729_12565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_12570 PF08534 Redoxin FR729_12570 PF00462 Glutaredoxin FR729_12575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FR729_12575 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_12585 PF14698 Argininosuccinate lyase C-terminal FR729_12585 PF00206 Lyase FR729_12585 PF00583 Acetyltransferase (GNAT) family FR729_12590 PF00764 Arginosuccinate synthase FR729_12595 PF00696 Amino acid kinase family FR729_12600 PF02774 Semialdehyde dehydrogenase, dimerisation domain FR729_12600 PF01118 Semialdehyde dehydrogenase, NAD binding domain FR729_12605 PF01546 Peptidase family M20/M25/M40 FR729_12605 PF07687 Peptidase dimerisation domain FR729_12610 PF00311 Phosphoenolpyruvate carboxylase FR729_12620 PF02219 Methylenetetrahydrofolate reductase FR729_12625 PF00742 Homoserine dehydrogenase FR729_12625 PF00696 Amino acid kinase family FR729_12625 PF03447 Homoserine dehydrogenase, NAD binding domain FR729_12630 PF01053 Cys/Met metabolism PLP-dependent enzyme FR729_12640 PF00390 Malic enzyme, N-terminal domain FR729_12640 PF03949 Malic enzyme, NAD binding domain FR729_12645 PF00210 Ferritin-like domain FR729_12650 PF04324 BFD-like [2Fe-2S] binding domain FR729_12655 PF03143 Elongation factor Tu C-terminal domain FR729_12655 PF03144 Elongation factor Tu domain 2 FR729_12655 PF00009 Elongation factor Tu GTP binding domain FR729_12660 PF00009 Elongation factor Tu GTP binding domain FR729_12660 PF14492 Elongation Factor G, domain II FR729_12660 PF00679 Elongation factor G C-terminus FR729_12660 PF03764 Elongation factor G, domain IV FR729_12660 PF03144 Elongation factor Tu domain 2 FR729_12665 PF00177 Ribosomal protein S7p/S5e FR729_12670 PF00164 Ribosomal protein S12/S23 FR729_12675 PF04077 DsrH like protein FR729_12680 PF02635 DsrE/DsrF-like family FR729_12685 PF02635 DsrE/DsrF-like family FR729_12690 PF08348 YheO-like PAS domain FR729_12690 PF13309 HTH domain FR729_12695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FR729_12695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FR729_12705 PF04102 SlyX FR729_12710 PF01112 Asparaginase FR729_12720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FR729_12730 PF00999 Sodium/hydrogen exchanger family FR729_12730 PF02254 TrkA-N domain FR729_12735 PF02525 Flavodoxin-like fold FR729_12740 PF00005 ABC transporter FR729_12740 PF12848 ABC transporter FR729_12750 PF00561 alpha/beta hydrolase fold FR729_12755 PF06794 Uncharacterised protein family (UPF0270) FR729_12760 PF00485 Phosphoribulokinase / Uridine kinase family FR729_12765 PF13545 Crp-like helix-turn-helix domain FR729_12765 PF00027 Cyclic nucleotide-binding domain FR729_12775 PF00171 Aldehyde dehydrogenase family FR729_12780 PF04958 Arginine N-succinyltransferase beta subunit FR729_12785 PF00202 Aminotransferase class-III FR729_12790 PF00117 Glutamine amidotransferase class-I FR729_12805 PF00579 tRNA synthetases class I (W and Y) FR729_12810 PF13419 Haloacid dehalogenase-like hydrolase FR729_12815 PF08032 RNA 2'-O ribose methyltransferase substrate binding FR729_12815 PF00588 SpoU rRNA Methylase family FR729_12820 PF08461 Ribonuclease R winged-helix domain FR729_12820 PF17876 Cold shock domain FR729_12820 PF00575 S1 RNA binding domain FR729_12820 PF00773 RNB domain FR729_12820 PF08206 Ribonuclease B OB domain FR729_12825 PF02082 Transcriptional regulator FR729_12830 PF00970 Oxidoreductase FAD-binding domain FR729_12830 PF00175 Oxidoreductase NAD-binding domain FR729_12830 PF00042 Globin FR729_12835 PF08238 Sel1 repeat FR729_12845 PF00709 Adenylosuccinate synthetase FR729_12850 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) FR729_12855 PF01145 SPFH domain / Band 7 family FR729_12860 PF01145 SPFH domain / Band 7 family FR729_12860 PF12221 Bacterial membrane protein N terminal FR729_12865 PF16360 GTP-binding GTPase Middle Region FR729_12865 PF13167 GTP-binding GTPase N-terminal FR729_12865 PF01926 50S ribosome-binding GTPase FR729_12870 PF17209 Hfq protein FR729_12880 PF01119 DNA mismatch repair protein, C-terminal domain FR729_12880 PF08676 MutL C terminal dimerisation domain FR729_12885 PF01520 N-acetylmuramoyl-L-alanine amidase FR729_12890 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FR729_12900 PF08331 Domain of unknown function (DUF1730) FR729_12965 PF00929 Exonuclease FR729_12970 PF03193 RsgA GTPase FR729_12975 PF02666 Phosphatidylserine decarboxylase FR729_12980 PF03600 Citrate transporter FR729_12980 PF02080 TrkA-C domain FR729_12990 PF01676 Metalloenzyme superfamily FR729_12990 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FR729_12995 PF00581 Rhodanese-like domain FR729_13000 PF02556 Preprotein translocase subunit SecB FR729_13005 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FR729_13005 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FR729_13010 PF00132 Bacterial transferase hexapeptide (six repeats) FR729_13010 PF06426 Serine acetyltransferase, N-terminal FR729_13015 PF01551 Peptidase family M23 FR729_13025 PF08360 QacR-like protein, C-terminal region FR729_13025 PF00440 Bacterial regulatory proteins, tetR family FR729_13035 PF00152 tRNA synthetases class II (D, K and N) FR729_13040 PF02910 Fumarate reductase flavoprotein C-term FR729_13040 PF00890 FAD binding domain FR729_13045 PF13085 2Fe-2S iron-sulfur cluster binding domain FR729_13045 PF13183 4Fe-4S dicluster domain FR729_13050 PF02300 Fumarate reductase subunit C FR729_13055 PF02313 Fumarate reductase subunit D FR729_13065 PF08207 Elongation factor P (EF-P) KOW-like domain FR729_13065 PF09285 Elongation factor P, C-terminal FR729_13065 PF01132 Elongation factor P (EF-P) OB domain FR729_13070 PF04055 Radical SAM superfamily FR729_13075 PF02308 MgtC family FR729_13085 PF00118 TCP-1/cpn60 chaperonin family FR729_13090 PF00166 Chaperonin 10 Kd subunit FR729_13095 PF01554 MatE FR729_13100 PF00365 Phosphofructokinase FR729_13105 PF01545 Cation efflux family FR729_13105 PF16916 Dimerisation domain of Zinc Transporter FR729_13110 PF07813 LTXXQ motif family protein FR729_13115 PF00072 Response regulator receiver domain FR729_13115 PF00486 Transcriptional regulatory protein, C terminal FR729_13120 PF16527 Two-component sensor protein CpxA, periplasmic domain FR729_13120 PF00672 HAMP domain FR729_13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_13120 PF00512 His Kinase A (phospho-acceptor) domain FR729_13125 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FR729_13125 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FR729_13130 PF00588 SpoU rRNA Methylase family FR729_13135 PF04186 FxsA cytoplasmic membrane protein FR729_13140 PF10415 Fumarase C C-terminus FR729_13140 PF00206 Lyase FR729_13145 PF03605 Anaerobic c4-dicarboxylate membrane transporter FR729_13150 PF11412 Disulphide bond corrector protein DsbC FR729_13150 PF02683 Cytochrome C biogenesis protein transmembrane region FR729_13155 PF00072 Response regulator receiver domain FR729_13155 PF00196 Bacterial regulatory proteins, luxR family FR729_13160 PF03471 Transporter associated domain FR729_13160 PF00999 Sodium/hydrogen exchanger family FR729_13160 PF02080 TrkA-C domain FR729_13170 PF00474 Sodium:solute symporter family FR729_13185 PF00206 Lyase FR729_13185 PF10415 Fumarase C C-terminus FR729_13190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_13190 PF00072 Response regulator receiver domain FR729_13190 PF09308 LuxQ, periplasmic FR729_13190 PF00512 His Kinase A (phospho-acceptor) domain FR729_13195 PF12832 MFS_1 like family FR729_13210 PF16177 Acetyl-coenzyme A synthetase N-terminus FR729_13210 PF13193 AMP-binding enzyme C-terminal domain FR729_13210 PF00501 AMP-binding enzyme FR729_13215 PF01220 Dehydroquinase class II FR729_13220 PF00364 Biotin-requiring enzyme FR729_13225 PF02785 Biotin carboxylase C-terminal domain FR729_13225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FR729_13225 PF00289 Biotin carboxylase, N-terminal domain FR729_13235 PF01207 Dihydrouridine synthase (Dus) FR729_13240 PF02954 Bacterial regulatory protein, Fis family FR729_13245 PF07690 Major Facilitator Superfamily FR729_13250 PF12848 ABC transporter FR729_13250 PF00005 ABC transporter FR729_13310 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FR729_13310 PF01276 Orn/Lys/Arg decarboxylase, major domain FR729_13310 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain FR729_13315 PF13520 Amino acid permease FR729_13325 PF00486 Transcriptional regulatory protein, C terminal FR729_13325 PF18500 CadC C-terminal domain 1 FR729_13330 PF13411 MerR HTH family regulatory protein FR729_13340 PF02142 MGS-like domain FR729_13340 PF01808 AICARFT/IMPCHase bienzyme FR729_13345 PF02843 Phosphoribosylglycinamide synthetase, C domain FR729_13345 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FR729_13345 PF02844 Phosphoribosylglycinamide synthetase, N domain FR729_13355 PF00216 Bacterial DNA-binding protein FR729_13360 PF00571 CBS domain FR729_13360 PF01595 Cyclin M transmembrane N-terminal domain FR729_13365 PF04222 Protein of unknown function (DUF416) FR729_13370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FR729_13375 PF03167 Uracil DNA glycosylase superfamily FR729_13380 PF01208 Uroporphyrinogen decarboxylase (URO-D) FR729_13385 PF00293 NUDIX domain FR729_13385 PF09297 NADH pyrophosphatase zinc ribbon domain FR729_13390 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ FR729_13395 PF05000 RNA polymerase Rpb1, domain 4 FR729_13395 PF04983 RNA polymerase Rpb1, domain 3 FR729_13395 PF04998 RNA polymerase Rpb1, domain 5 FR729_13395 PF04997 RNA polymerase Rpb1, domain 1 FR729_13395 PF00623 RNA polymerase Rpb1, domain 2 FR729_13400 PF10385 RNA polymerase beta subunit external 1 domain FR729_13400 PF04561 RNA polymerase Rpb2, domain 2 FR729_13400 PF04565 RNA polymerase Rpb2, domain 3 FR729_13400 PF04560 RNA polymerase Rpb2, domain 7 FR729_13400 PF00562 RNA polymerase Rpb2, domain 6 FR729_13400 PF04563 RNA polymerase beta subunit FR729_13405 PF00542 Ribosomal protein L7/L12 C-terminal domain FR729_13405 PF16320 Ribosomal protein L7/L12 dimerisation domain FR729_13410 PF00466 Ribosomal protein L10 FR729_13415 PF00687 Ribosomal protein L1p/L10e family FR729_13420 PF03946 Ribosomal protein L11, N-terminal domain FR729_13420 PF00298 Ribosomal protein L11, RNA binding domain FR729_13425 PF02357 Transcription termination factor nusG FR729_13425 PF00467 KOW motif FR729_13430 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FR729_13440 PF00009 Elongation factor Tu GTP binding domain FR729_13440 PF03144 Elongation factor Tu domain 2 FR729_13440 PF03143 Elongation factor Tu C-terminal domain FR729_13470 PF00485 Phosphoribulokinase / Uridine kinase family FR729_13475 PF03099 Biotin/lipoate A/B protein ligase family FR729_13475 PF02237 Biotin protein ligase C terminal domain FR729_13475 PF08279 HTH domain FR729_13480 PF01565 FAD binding domain FR729_13480 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FR729_13490 PF13091 PLD-like domain FR729_13520 PF01177 Asp/Glu/Hydantoin racemase FR729_13530 PF00593 TonB dependent receptor FR729_13530 PF07715 TonB-dependent Receptor Plug Domain FR729_13560 PF01476 LysM domain FR729_13560 PF08525 Opacity-associated protein A N-terminal motif FR729_13560 PF01551 Peptidase family M23 FR729_13575 PF01548 Transposase FR729_13575 PF02371 Transposase IS116/IS110/IS902 family FR729_13580 PF02796 Helix-turn-helix domain of resolvase FR729_13580 PF00239 Resolvase, N terminal domain FR729_13695 PF05958 tRNA (Uracil-5-)-methyltransferase FR729_13705 PF00440 Bacterial regulatory proteins, tetR family FR729_13710 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_13710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FR729_13715 PF01554 MatE FR729_13720 PF04072 Leucine carboxyl methyltransferase FR729_13730 PF01726 LexA DNA binding domain FR729_13730 PF00717 Peptidase S24-like FR729_13740 PF01553 Acyltransferase FR729_13745 PF01040 UbiA prenyltransferase family FR729_13750 PF04345 Chorismate lyase FR729_13755 PF03748 Flagellar basal body-associated protein FliL FR729_13760 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease FR729_13760 PF01694 Rhomboid family FR729_13765 PF00581 Rhodanese-like domain FR729_13775 PF04542 Sigma-70 region 2 FR729_13775 PF04545 Sigma-70, region 4 FR729_13775 PF00140 Sigma-70 factor, region 1.2 FR729_13780 PF18075 FtsX extracellular domain FR729_13785 PF00005 ABC transporter FR729_13790 PF02881 SRP54-type protein, helical bundle domain FR729_13790 PF00448 SRP54-type protein, GTPase domain FR729_13805 PF01914 MarC family integral membrane protein FR729_13830 PF10694 Protein of unknown function (DUF2500) FR729_13850 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FR729_13850 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FR729_13855 PF01022 Bacterial regulatory protein, arsR family FR729_13860 PF08668 HDOD domain FR729_13860 PF00563 EAL domain FR729_13865 PF01810 LysE type translocator FR729_13870 PF12146 Serine aminopeptidase, S33 FR729_13895 PF00990 Diguanylate cyclase, GGDEF domain FR729_13895 PF10442 FIST C domain FR729_13895 PF08495 FIST N domain FR729_13895 PF00563 EAL domain FR729_13900 PF13419 Haloacid dehalogenase-like hydrolase FR729_13905 PF00589 Phage integrase family FR729_13905 PF02899 Phage integrase, N-terminal SAM-like domain FR729_13915 PF01678 Diaminopimelate epimerase FR729_13920 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FR729_13920 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FR729_13930 PF01491 Frataxin-like domain FR729_13935 PF01295 Adenylate cyclase, class-I FR729_13935 PF12633 Adenylate cyclase NT domain FR729_13940 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FR729_13940 PF03900 Porphobilinogen deaminase, C-terminal domain FR729_13945 PF02602 Uroporphyrinogen-III synthase HemD FR729_13950 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase FR729_13955 PF07219 HemY protein N-terminus FR729_13995 PF00175 Oxidoreductase NAD-binding domain FR729_14000 PF00111 2Fe-2S iron-sulfur cluster binding domain FR729_14005 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FR729_14015 PF07498 Rho termination factor, N-terminal domain FR729_14015 PF07497 Rho termination factor, RNA-binding domain FR729_14015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FR729_14020 PF00085 Thioredoxin FR729_14025 PF00270 DEAD/DEAH box helicase FR729_14025 PF00271 Helicase conserved C-terminal domain FR729_14030 PF02541 Ppx/GppA phosphatase family FR729_14040 PF02592 Putative vitamin uptake transporter FR729_14055 PF00271 Helicase conserved C-terminal domain FR729_14055 PF00570 HRDC domain FR729_14055 PF16124 RecQ zinc-binding FR729_14055 PF00270 DEAD/DEAH box helicase FR729_14055 PF09382 RQC domain FR729_14060 PF00892 EamA-like transporter family FR729_14070 PF01810 LysE type translocator FR729_14085 PF13361 UvrD-like helicase C-terminal domain FR729_14085 PF00580 UvrD/REP helicase N-terminal domain FR729_14095 PF05114 Protein of unknown function (DUF692) FR729_14115 PF07690 Major Facilitator Superfamily FR729_14120 PF03466 LysR substrate binding domain FR729_14120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_14125 PF01321 Creatinase/Prolidase N-terminal domain FR729_14125 PF00557 Metallopeptidase family M24 FR729_14125 PF01321 Creatinase/Prolidase N-terminal domain FR729_14125 PF00557 Metallopeptidase family M24 FR729_14130 PF04055 Radical SAM superfamily FR729_14130 PF06968 Biotin and Thiamin Synthesis associated domain FR729_14135 PF05690 Thiazole biosynthesis protein ThiG FR729_14140 PF02597 ThiS family FR729_14145 PF00899 ThiF family FR729_14150 PF02581 Thiamine monophosphate synthase FR729_14155 PF01964 Radical SAM ThiC family FR729_14155 PF13667 ThiC-associated domain FR729_14160 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FR729_14165 PF07732 Multicopper oxidase FR729_14165 PF00394 Multicopper oxidase FR729_14165 PF07731 Multicopper oxidase FR729_14210 PF12724 Flavodoxin domain FR729_14215 PF02386 Cation transport protein FR729_14220 PF09186 Domain of unknown function (DUF1949) FR729_14220 PF01205 Uncharacterized protein family UPF0029 FR729_14225 PF00378 Enoyl-CoA hydratase/isomerase FR729_14225 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FR729_14225 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FR729_14230 PF02803 Thiolase, C-terminal domain FR729_14230 PF00108 Thiolase, N-terminal domain FR729_14235 PF08240 Alcohol dehydrogenase GroES-like domain FR729_14235 PF00107 Zinc-binding dehydrogenase FR729_14240 PF03466 LysR substrate binding domain FR729_14240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_14250 PF01206 Sulfurtransferase TusA FR729_14260 PF01169 Uncharacterized protein family UPF0016 FR729_14265 PF02091 Glycyl-tRNA synthetase alpha subunit FR729_14270 PF05746 DALR anticodon binding domain FR729_14270 PF02092 Glycyl-tRNA synthetase beta subunit FR729_14275 PF00128 Alpha amylase, catalytic domain FR729_14280 PF00155 Aminotransferase class I and II FR729_14285 PF00011 Hsp20/alpha crystallin family FR729_14300 PF18053 DNA gyrase B subunit insert domain FR729_14300 PF00986 DNA gyrase B subunit, carboxyl terminus FR729_14300 PF01751 Toprim domain FR729_14300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_14300 PF00204 DNA gyrase B FR729_14305 PF02463 RecF/RecN/SMC N terminal domain FR729_14310 PF02767 DNA polymerase III beta subunit, central domain FR729_14310 PF00712 DNA polymerase III beta subunit, N-terminal domain FR729_14310 PF02768 DNA polymerase III beta subunit, C-terminal domain FR729_14315 PF08299 Bacterial dnaA protein helix-turn-helix FR729_14315 PF11638 DnaA N-terminal domain FR729_14315 PF00308 Bacterial dnaA protein FR729_14325 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_14330 PF00528 Binding-protein-dependent transport system inner membrane component FR729_14335 PF00005 ABC transporter FR729_14340 PF00468 Ribosomal protein L34 FR729_14345 PF00825 Ribonuclease P FR729_14350 PF01809 Putative membrane protein insertion efficiency factor FR729_14355 PF14849 YidC periplasmic domain FR729_14355 PF02096 60Kd inner membrane protein FR729_14360 PF12631 MnmE helical domain FR729_14360 PF01926 50S ribosome-binding GTPase FR729_14360 PF10396 GTP-binding protein TrmE N-terminus FR729_14365 PF00258 Flavodoxin FR729_14370 PF01134 Glucose inhibited division protein A FR729_14370 PF13932 GidA associated domain FR729_14375 PF02527 rRNA small subunit methyltransferase G FR729_14380 PF13614 AAA domain FR729_14385 PF17762 HTH domain found in ParB protein FR729_14385 PF02195 ParB-like nuclease domain FR729_14390 PF03899 ATP synthase I chain FR729_14395 PF00119 ATP synthase A chain FR729_14400 PF00137 ATP synthase subunit C FR729_14405 PF00430 ATP synthase B/B' CF(0) FR729_14410 PF00213 ATP synthase delta (OSCP) subunit FR729_14415 PF00306 ATP synthase alpha/beta chain, C terminal domain FR729_14415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FR729_14415 PF02874 ATP synthase alpha/beta family, beta-barrel domain FR729_14420 PF00231 ATP synthase FR729_14425 PF02874 ATP synthase alpha/beta family, beta-barrel domain FR729_14425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FR729_14430 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FR729_14430 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FR729_14435 PF00132 Bacterial transferase hexapeptide (six repeats) FR729_14435 PF12804 MobA-like NTP transferase domain FR729_14440 PF00528 Binding-protein-dependent transport system inner membrane component FR729_14445 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_14450 PF07690 Major Facilitator Superfamily FR729_14455 PF03466 LysR substrate binding domain FR729_14455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_14460 PF00585 C-terminal regulatory domain of Threonine dehydratase FR729_14460 PF00291 Pyridoxal-phosphate dependent enzyme FR729_14465 PF00920 Dehydratase family FR729_14470 PF01063 Amino-transferase class IV FR729_14480 PF00205 Thiamine pyrophosphate enzyme, central domain FR729_14480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FR729_14480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FR729_14485 PF01078 Magnesium chelatase, subunit ChlI FR729_14485 PF13335 Magnesium chelatase, subunit ChlI C-terminal FR729_14495 PF01553 Acyltransferase FR729_14500 PF01323 DSBA-like thioredoxin domain FR729_14505 PF01636 Phosphotransferase enzyme family FR729_14510 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase FR729_14510 PF13746 4Fe-4S dicluster domain FR729_14510 PF12801 4Fe-4S binding domain FR729_14515 PF06288 Protein of unknown function (DUF1040) FR729_14525 PF07070 SpoOM protein FR729_14530 PF03006 Haemolysin-III related FR729_14540 PF02386 Cation transport protein FR729_14545 PF02254 TrkA-N domain FR729_14545 PF02080 TrkA-C domain FR729_14550 PF01189 16S rRNA methyltransferase RsmB/F FR729_14550 PF01029 NusB family FR729_14555 PF00551 Formyl transferase FR729_14555 PF02911 Formyl transferase, C-terminal domain FR729_14560 PF01327 Polypeptide deformylase FR729_14570 PF02481 DNA recombination-mediator protein A FR729_14570 PF17782 DprA winged helix domain FR729_14575 PF04361 Protein of unknown function (DUF494) FR729_14585 PF01396 Topoisomerase DNA binding C4 zinc finger FR729_14590 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FR729_14590 PF02222 ATP-grasp domain FR729_14595 PF00731 AIR carboxylase FR729_14600 PF01300 Telomere recombination FR729_14605 PF01218 Coproporphyrinogen III oxidase FR729_14610 PF08501 Shikimate dehydrogenase substrate binding domain FR729_14610 PF01488 Shikimate / quinate 5-dehydrogenase FR729_14610 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FR729_14615 PF07369 Protein of unknown function (DUF1488) FR729_14620 PF00132 Bacterial transferase hexapeptide (six repeats) FR729_14655 PF03466 LysR substrate binding domain FR729_14655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_14660 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FR729_14660 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FR729_14665 PF04380 Membrane fusogenic activity FR729_14670 PF00873 AcrB/AcrD/AcrF family FR729_14675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_14680 PF00440 Bacterial regulatory proteins, tetR family FR729_14680 PF16295 Tetracyclin repressor-like, C-terminal domain FR729_14685 PF00580 UvrD/REP helicase N-terminal domain FR729_14685 PF13361 UvrD-like helicase C-terminal domain FR729_14690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FR729_14720 PF13419 Haloacid dehalogenase-like hydrolase FR729_14730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_14730 PF00005 ABC transporter FR729_14735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_14745 PF12911 N-terminal TM domain of oligopeptide transport permease C FR729_14745 PF00528 Binding-protein-dependent transport system inner membrane component FR729_14785 PF00356 Bacterial regulatory proteins, lacI family FR729_14785 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FR729_14790 PF03466 LysR substrate binding domain FR729_14790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_14795 PF00893 Small Multidrug Resistance protein FR729_14800 PF00893 Small Multidrug Resistance protein FR729_14805 PF00920 Dehydratase family FR729_14810 PF01202 Shikimate kinase FR729_14815 PF02447 GntP family permease FR729_14820 PF01081 KDPG and KHG aldolase FR729_14825 PF01048 Phosphorylase superfamily FR729_14830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_14830 PF03466 LysR substrate binding domain FR729_14835 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_14835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FR729_14840 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FR729_14845 PF01432 Peptidase family M3 FR729_14850 PF01037 Lrp/AsnC ligand binding domain FR729_14855 PF08448 PAS fold FR729_14855 PF00990 Diguanylate cyclase, GGDEF domain FR729_14855 PF00563 EAL domain FR729_14860 PF04445 Putative SAM-dependent methyltransferase FR729_14870 PF00892 EamA-like transporter family FR729_14875 PF00582 Universal stress protein family FR729_14880 PF00210 Ferritin-like domain FR729_14885 PF10625 Universal stress protein B (UspB) FR729_14965 PF02463 RecF/RecN/SMC N terminal domain FR729_14970 PF00580 UvrD/REP helicase N-terminal domain FR729_14970 PF13361 UvrD-like helicase C-terminal domain FR729_15000 PF01590 GAF domain FR729_15000 PF02954 Bacterial regulatory protein, Fis family FR729_15000 PF00158 Sigma-54 interaction domain FR729_15025 PF00781 Diacylglycerol kinase catalytic domain FR729_15055 PF01594 AI-2E family transporter FR729_15060 PF03707 Bacterial signalling protein N terminal repeat FR729_15060 PF00563 EAL domain FR729_15060 PF00990 Diguanylate cyclase, GGDEF domain FR729_15070 PF02646 RmuC family FR729_15075 PF01209 ubiE/COQ5 methyltransferase family FR729_15080 PF02036 SCP-2 sterol transfer family FR729_15085 PF03109 ABC1 family FR729_15090 PF02416 mttA/Hcf106 family FR729_15095 PF02416 mttA/Hcf106 family FR729_15100 PF00902 Sec-independent protein translocase protein (TatC) FR729_15110 PF01026 TatD related DNase FR729_15120 PF00490 Delta-aminolevulinic acid dehydratase FR729_15125 PF00583 Acetyltransferase (GNAT) family FR729_15135 PF01367 5'-3' exonuclease, C-terminal SAM fold FR729_15135 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FR729_15135 PF01612 3'-5' exonuclease FR729_15135 PF00476 DNA polymerase family A FR729_15140 PF01926 50S ribosome-binding GTPase FR729_15145 PF00034 Cytochrome c FR729_15160 PF04220 Der GTPase activator (YihI) FR729_15165 PF10675 Protein of unknown function (DUF2489) FR729_15170 PF04055 Radical SAM superfamily FR729_15170 PF06969 HemN C-terminal domain FR729_15175 PF00962 Adenosine/AMP deaminase FR729_15180 PF03707 Bacterial signalling protein N terminal repeat FR729_15180 PF00990 Diguanylate cyclase, GGDEF domain FR729_15180 PF00563 EAL domain FR729_15185 PF00158 Sigma-54 interaction domain FR729_15185 PF02954 Bacterial regulatory protein, Fis family FR729_15185 PF00072 Response regulator receiver domain FR729_15190 PF00989 PAS fold FR729_15190 PF00512 His Kinase A (phospho-acceptor) domain FR729_15190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_15200 PF03951 Glutamine synthetase, beta-Grasp domain FR729_15200 PF00120 Glutamine synthetase, catalytic domain FR729_15210 PF08299 Bacterial dnaA protein helix-turn-helix FR729_15210 PF00308 Bacterial dnaA protein FR729_15220 PF03631 Virulence factor BrkB FR729_15225 PF02580 D-Tyr-tRNA(Tyr) deacylase FR729_15230 PF00583 Acetyltransferase (GNAT) family FR729_15230 PF09500 Putative thioesterase (yiiD_Cterm) FR729_15240 PF01293 Phosphoenolpyruvate carboxykinase FR729_15245 PF01430 Hsp33 protein FR729_15250 PF01479 S4 domain FR729_15255 PF11356 Type II secretion system protein C FR729_15260 PF00263 Bacterial type II and III secretion system protein FR729_15260 PF03958 Bacterial type II/III secretion system short domain FR729_15265 PF00437 Type II/IV secretion system protein FR729_15270 PF00482 Type II secretion system (T2SS), protein F FR729_15275 PF08334 Type II secretion system (T2SS), protein G FR729_15275 PF07963 Prokaryotic N-terminal methylation motif FR729_15280 PF12019 Type II transport protein GspH FR729_15285 PF02501 Type II secretion system (T2SS), protein I FR729_15285 PF07963 Prokaryotic N-terminal methylation motif FR729_15290 PF11612 Type II secretion system (T2SS), protein J FR729_15290 PF07963 Prokaryotic N-terminal methylation motif FR729_15295 PF03934 Type II secretion system (T2SS), protein K FR729_15300 PF12693 GspL periplasmic domain FR729_15300 PF05134 Type II secretion system (T2SS), protein L FR729_15305 PF04612 Type II secretion system (T2SS), protein M FR729_15310 PF01203 Type II secretion system (T2SS), protein N FR729_15315 PF00459 Inositol monophosphatase family FR729_15320 PF00293 NUDIX domain FR729_15325 PF01106 NifU-like domain FR729_15325 PF01521 Iron-sulphur cluster biosynthesis FR729_15330 PF00156 Phosphoribosyl transferase domain FR729_15335 PF00561 alpha/beta hydrolase fold FR729_15345 PF09371 Tex-like protein N-terminal domain FR729_15345 PF17674 HHH domain FR729_15345 PF00575 S1 RNA binding domain FR729_15345 PF16921 Tex protein YqgF-like domain FR729_15355 PF03449 Transcription elongation factor, N-terminal FR729_15355 PF01272 Transcription elongation factor, GreA/GreB, C-term FR729_15365 PF00072 Response regulator receiver domain FR729_15365 PF00486 Transcriptional regulatory protein, C terminal FR729_15370 PF00672 HAMP domain FR729_15370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_15370 PF00512 His Kinase A (phospho-acceptor) domain FR729_15375 PF00860 Permease family FR729_15380 PF17191 RecG wedge domain FR729_15380 PF00270 DEAD/DEAH box helicase FR729_15380 PF00271 Helicase conserved C-terminal domain FR729_15385 PF00588 SpoU rRNA Methylase family FR729_15385 PF12105 SpoU, rRNA methylase, C-terminal FR729_15390 PF02824 TGS domain FR729_15390 PF04607 Region found in RelA / SpoT proteins FR729_15390 PF13291 ACT domain FR729_15395 PF01192 RNA polymerase Rpb6 FR729_15400 PF00625 Guanylate kinase FR729_15420 PF02472 Biopolymer transport protein ExbD/TolR FR729_15425 PF01618 MotA/TolQ/ExbB proton channel family FR729_15440 PF00593 TonB dependent receptor FR729_15440 PF07715 TonB-dependent Receptor Plug Domain FR729_15450 PF00528 Binding-protein-dependent transport system inner membrane component FR729_15455 PF12911 N-terminal TM domain of oligopeptide transport permease C FR729_15455 PF00528 Binding-protein-dependent transport system inner membrane component FR729_15460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_15465 PF00005 ABC transporter FR729_15465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_15470 PF00005 ABC transporter FR729_15470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_15510 PF04002 RadC-like JAB domain FR729_15515 PF00075 RNase H FR729_15525 PF04851 Type III restriction enzyme, res subunit FR729_15525 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FR729_15525 PF08463 EcoEI R protein C-terminal FR729_15525 PF00271 Helicase conserved C-terminal domain FR729_15535 PF01420 Type I restriction modification DNA specificity domain FR729_15555 PF03755 YicC-like family, N-terminal region FR729_15555 PF08340 Domain of unknown function (DUF1732) FR729_15565 PF01138 3' exoribonuclease family, domain 1 FR729_15565 PF03725 3' exoribonuclease family, domain 2 FR729_15575 PF03279 Bacterial lipid A biosynthesis acyltransferase FR729_15580 PF00440 Bacterial regulatory proteins, tetR family FR729_15585 PF02441 Flavoprotein FR729_15585 PF04127 DNA / pantothenate metabolism flavoprotein FR729_15595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_15595 PF17200 Single Cache domain 2 FR729_15595 PF00672 HAMP domain FR729_15600 PF04002 RadC-like JAB domain FR729_15605 PF00830 Ribosomal L28 family FR729_15610 PF00471 Ribosomal protein L33 FR729_15620 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FR729_15620 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FR729_15620 PF06827 Zinc finger found in FPG and IleRS FR729_15625 PF01467 Cytidylyltransferase-like FR729_15630 PF05686 Glycosyl transferase family 90 FR729_15635 PF00535 Glycosyl transferase family 2 FR729_15640 PF00535 Glycosyl transferase family 2 FR729_15645 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FR729_15650 PF01219 Prokaryotic diacylglycerol kinase FR729_15660 PF16363 GDP-mannose 4,6 dehydratase FR729_15665 PF00483 Nucleotidyl transferase FR729_15670 PF05523 WxcM-like, C-terminal FR729_15680 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FR729_15705 PF00682 HMGL-like FR729_15705 PF07836 DmpG-like communication domain FR729_15710 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FR729_15715 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FR729_15725 PF03279 Bacterial lipid A biosynthesis acyltransferase FR729_15730 PF01370 NAD dependent epimerase/dehydratase family FR729_15735 PF06082 Exopolysaccharide biosynthesis protein YbjH FR729_15760 PF02563 Polysaccharide biosynthesis/export protein FR729_15760 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FR729_15760 PF10531 SLBB domain FR729_15775 PF00535 Glycosyl transferase family 2 FR729_15800 PF00535 Glycosyl transferase family 2 FR729_15805 PF02397 Bacterial sugar transferase FR729_15810 PF10996 Beta-Casp domain FR729_15810 PF00753 Metallo-beta-lactamase superfamily FR729_15810 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain FR729_15815 PF00953 Glycosyl transferase family 4 FR729_15835 PF00534 Glycosyl transferases group 1 FR729_15835 PF13439 Glycosyltransferase Family 4 FR729_15850 PF01370 NAD dependent epimerase/dehydratase family FR729_15855 PF00534 Glycosyl transferases group 1 FR729_15865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FR729_15865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain FR729_15865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FR729_15870 PF00483 Nucleotidyl transferase FR729_15875 PF00121 Triosephosphate isomerase FR729_15900 PF08220 DeoR-like helix-turn-helix domain FR729_15900 PF00455 DeoR C terminal sensor domain FR729_15905 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded FR729_15910 PF06005 Cell division protein ZapB FR729_15915 PF03737 Aldolase/RraA FR729_15920 PF01040 UbiA prenyltransferase family FR729_15925 PF00004 ATPase family associated with various cellular activities (AAA) FR729_15925 PF07724 AAA domain (Cdc48 subfamily) FR729_15930 PF00227 Proteasome subunit FR729_15940 PF00356 Bacterial regulatory proteins, lacI family FR729_15945 PF18074 Primosomal protein N C-terminal domain FR729_15945 PF00271 Helicase conserved C-terminal domain FR729_15945 PF17764 3′ DNA-binding domain (3′BD) FR729_15945 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FR729_15945 PF00270 DEAD/DEAH box helicase FR729_15955 PF01197 Ribosomal protein L31 FR729_15960 PF00338 Ribosomal protein S10p/S20e FR729_15965 PF00297 Ribosomal protein L3 FR729_15970 PF00573 Ribosomal protein L4/L1 family FR729_15975 PF00276 Ribosomal protein L23 FR729_15980 PF00181 Ribosomal Proteins L2, RNA binding domain FR729_15980 PF03947 Ribosomal Proteins L2, C-terminal domain FR729_15985 PF00203 Ribosomal protein S19 FR729_15990 PF00237 Ribosomal protein L22p/L17e FR729_15995 PF00189 Ribosomal protein S3, C-terminal domain FR729_15995 PF07650 KH domain FR729_16000 PF00252 Ribosomal protein L16p/L10e FR729_16005 PF00831 Ribosomal L29 protein FR729_16010 PF00366 Ribosomal protein S17 FR729_16015 PF00238 Ribosomal protein L14p/L23e FR729_16020 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FR729_16020 PF00467 KOW motif FR729_16025 PF00673 ribosomal L5P family C-terminus FR729_16025 PF00281 Ribosomal protein L5 FR729_16030 PF00253 Ribosomal protein S14p/S29e FR729_16035 PF00410 Ribosomal protein S8 FR729_16040 PF00347 Ribosomal protein L6 FR729_16045 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FR729_16050 PF03719 Ribosomal protein S5, C-terminal domain FR729_16050 PF00333 Ribosomal protein S5, N-terminal domain FR729_16055 PF00327 Ribosomal protein L30p/L7e FR729_16065 PF00344 SecY translocase FR729_16070 PF00444 Ribosomal protein L36 FR729_16075 PF00416 Ribosomal protein S13/S18 FR729_16080 PF00411 Ribosomal protein S11 FR729_16085 PF00163 Ribosomal protein S4/S9 N-terminal domain FR729_16085 PF01479 S4 domain FR729_16090 PF01000 RNA polymerase Rpb3/RpoA insert domain FR729_16090 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FR729_16090 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FR729_16095 PF01196 Ribosomal protein L17 FR729_16105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FR729_16105 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FR729_16115 PF13673 Acetyltransferase (GNAT) domain FR729_16120 PF00271 Helicase conserved C-terminal domain FR729_16120 PF03880 DbpA RNA binding domain FR729_16120 PF00270 DEAD/DEAH box helicase FR729_16130 PF02872 5'-nucleotidase, C-terminal domain FR729_16130 PF00149 Calcineurin-like phosphoesterase FR729_16135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FR729_16135 PF10414 Sirohaem synthase dimerisation region FR729_16135 PF14824 Sirohaem biosynthesis protein central FR729_16140 PF01507 Phosphoadenosine phosphosulfate reductase family FR729_16145 PF00009 Elongation factor Tu GTP binding domain FR729_16150 PF02080 TrkA-C domain FR729_16150 PF03600 Citrate transporter FR729_16175 PF00005 ABC transporter FR729_16185 PF10795 Protein of unknown function (DUF2607) FR729_16190 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) FR729_16195 PF06526 Protein of unknown function (DUF1107) FR729_16200 PF01625 Peptide methionine sulfoxide reductase FR729_16205 PF01103 Surface antigen FR729_16205 PF17243 POTRA domain TamA domain 1 FR729_16205 PF07244 Surface antigen variable number repeat FR729_16210 PF04357 TamB, inner membrane protein subunit of TAM complex FR729_16215 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like FR729_16225 PF00719 Inorganic pyrophosphatase FR729_16230 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FR729_16240 PF01225 Mur ligase family, catalytic domain FR729_16240 PF02875 Mur ligase family, glutamate ligase domain FR729_16240 PF08245 Mur ligase middle domain FR729_16245 PF02441 Flavoprotein FR729_16255 PF00528 Binding-protein-dependent transport system inner membrane component FR729_16260 PF00005 ABC transporter FR729_16265 PF03466 LysR substrate binding domain FR729_16265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_16270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FR729_16290 PF16868 NMT1-like family FR729_16300 PF02863 Arginine repressor, C-terminal domain FR729_16300 PF01316 Arginine repressor, DNA binding domain FR729_16305 PF00056 lactate/malate dehydrogenase, NAD binding domain FR729_16305 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FR729_16315 PF00348 Polyprenyl synthetase FR729_16320 PF00829 Ribosomal prokaryotic L21 protein FR729_16325 PF01016 Ribosomal L27 protein FR729_16330 PF01926 50S ribosome-binding GTPase FR729_16330 PF01018 GTP1/OBG FR729_16335 PF06738 Putative threonine/serine exporter FR729_16340 PF12821 Threonine/Serine exporter, ThrE FR729_16345 PF00186 Dihydrofolate reductase FR729_16350 PF00149 Calcineurin-like phosphoesterase FR729_16355 PF04379 ApaG domain FR729_16360 PF00398 Ribosomal RNA adenine dimethylase FR729_16365 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FR729_16370 PF09312 SurA N-terminal domain FR729_16375 PF04453 LPS transport system D FR729_16375 PF03968 OstA-like protein FR729_16380 PF00226 DnaJ domain FR729_16380 PF05099 Tellurite resistance protein TerB FR729_16390 PF00694 Aconitase C-terminal domain FR729_16395 PF00330 Aconitase family (aconitate hydratase) FR729_16400 PF00180 Isocitrate/isopropylmalate dehydrogenase FR729_16405 PF08502 LeuA allosteric (dimerisation) domain FR729_16405 PF00682 HMGL-like FR729_16420 PF01569 PAP2 superfamily FR729_16430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_16430 PF03466 LysR substrate binding domain FR729_16435 PF00501 AMP-binding enzyme FR729_16440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FR729_16440 PF00205 Thiamine pyrophosphate enzyme, central domain FR729_16440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FR729_16445 PF10369 Small subunit of acetolactate synthase FR729_16450 PF00990 Diguanylate cyclase, GGDEF domain FR729_16450 PF07694 5TMR of 5TMR-LYT FR729_16460 PF00224 Pyruvate kinase, barrel domain FR729_16460 PF02887 Pyruvate kinase, alpha/beta domain FR729_16465 PF00455 DeoR C terminal sensor domain FR729_16465 PF08220 DeoR-like helix-turn-helix domain FR729_16470 PF01380 SIS domain FR729_16475 PF00465 Iron-containing alcohol dehydrogenase FR729_16480 PF02733 Dak1 domain FR729_16485 PF02734 DAK2 domain FR729_16490 PF00391 PEP-utilising enzyme, mobile domain FR729_16490 PF05524 PEP-utilising enzyme, N-terminal FR729_16490 PF02896 PEP-utilising enzyme, TIM barrel domain FR729_16495 PF00158 Sigma-54 interaction domain FR729_16495 PF00989 PAS fold FR729_16495 PF02954 Bacterial regulatory protein, Fis family FR729_16500 PF05068 Mannitol repressor FR729_16505 PF08125 Mannitol dehydrogenase C-terminal domain FR729_16505 PF01232 Mannitol dehydrogenase Rossmann domain FR729_16510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FR729_16510 PF02378 Phosphotransferase system, EIIC FR729_16510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FR729_16535 PF03180 NLPA lipoprotein FR729_16565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FR729_16570 PF08240 Alcohol dehydrogenase GroES-like domain FR729_16570 PF00107 Zinc-binding dehydrogenase FR729_16590 PF00155 Aminotransferase class I and II FR729_16590 PF00392 Bacterial regulatory proteins, gntR family FR729_16595 PF00557 Metallopeptidase family M24 FR729_16595 PF01321 Creatinase/Prolidase N-terminal domain FR729_16600 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FR729_16605 PF01037 Lrp/AsnC ligand binding domain FR729_16610 PF00171 Aldehyde dehydrogenase family FR729_16615 PF00202 Aminotransferase class-III FR729_16620 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) FR729_16635 PF03466 LysR substrate binding domain FR729_16635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_16645 PF17763 Glutaminase/Asparaginase C-terminal domain FR729_16645 PF00710 Asparaginase, N-terminal FR729_16650 PF03618 Kinase/pyrophosphorylase FR729_16655 PF00391 PEP-utilising enzyme, mobile domain FR729_16655 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FR729_16655 PF02896 PEP-utilising enzyme, TIM barrel domain FR729_16665 PF00072 Response regulator receiver domain FR729_16665 PF00196 Bacterial regulatory proteins, luxR family FR729_16670 PF00579 tRNA synthetases class I (W and Y) FR729_16675 PF13416 Bacterial extracellular solute-binding protein FR729_16690 PF00703 Glycosyl hydrolases family 2 FR729_16690 PF02837 Glycosyl hydrolases family 2, sugar binding domain FR729_16690 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 FR729_16690 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FR729_16695 PF02028 BCCT, betaine/carnitine/choline family transporter FR729_16700 PF07702 UTRA domain FR729_16700 PF00392 Bacterial regulatory proteins, gntR family FR729_16725 PF00005 ABC transporter FR729_16725 PF08402 TOBE domain FR729_16745 PF00873 AcrB/AcrD/AcrF family FR729_16760 PF00873 AcrB/AcrD/AcrF family FR729_16765 PF13533 Biotin-lipoyl like FR729_16770 PF13091 PLD-like domain FR729_16775 PF00398 Ribosomal RNA adenine dimethylase FR729_16795 PF00376 MerR family regulatory protein FR729_16795 PF09278 MerR, DNA binding FR729_16810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_16810 PF03466 LysR substrate binding domain FR729_16820 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain FR729_16820 PF13378 Enolase C-terminal domain-like FR729_16830 PF03144 Elongation factor Tu domain 2 FR729_16830 PF00009 Elongation factor Tu GTP binding domain FR729_16830 PF00679 Elongation factor G C-terminus FR729_16830 PF03764 Elongation factor G, domain IV FR729_16830 PF14492 Elongation Factor G, domain II FR729_16855 PF02001 Protein of unknown function DUF134 FR729_16865 PF00528 Binding-protein-dependent transport system inner membrane component FR729_16870 PF00571 CBS domain FR729_16870 PF00005 ABC transporter FR729_16875 PF17185 NlpE C-terminal OB domain FR729_16875 PF04170 NlpE N-terminal domain FR729_16880 PF06629 MltA-interacting protein MipA FR729_16895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_16895 PF03466 LysR substrate binding domain FR729_16920 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FR729_16920 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FR729_16930 PF00857 Isochorismatase family FR729_16945 PF08220 DeoR-like helix-turn-helix domain FR729_16945 PF00455 DeoR C terminal sensor domain FR729_16950 PF01641 SelR domain FR729_16950 PF01625 Peptide methionine sulfoxide reductase FR729_16955 PF03060 Nitronate monooxygenase FR729_16960 PF13520 Amino acid permease FR729_16965 PF05985 Ethanolamine ammonia-lyase light chain (EutC) FR729_16970 PF06751 Ethanolamine ammonia lyase large subunit (EutB) FR729_16975 PF12833 Helix-turn-helix domain FR729_16980 PF08359 YsiA-like protein, C-terminal region FR729_16980 PF00440 Bacterial regulatory proteins, tetR family FR729_16995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_16995 PF03466 LysR substrate binding domain FR729_17000 PF01810 LysE type translocator FR729_17010 PF00118 TCP-1/cpn60 chaperonin family FR729_17015 PF00166 Chaperonin 10 Kd subunit FR729_17025 PF00581 Rhodanese-like domain FR729_17040 PF01070 FMN-dependent dehydrogenase FR729_17060 PF00669 Bacterial flagellin N-terminal helical region FR729_17065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_17065 PF00460 Flagella basal body rod protein FR729_17070 PF10135 Rod binding protein FR729_17070 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FR729_17075 PF02119 Flagellar P-ring protein FR729_17080 PF02107 Flagellar L-ring protein FR729_17085 PF00460 Flagella basal body rod protein FR729_17085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_17090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_17090 PF00460 Flagella basal body rod protein FR729_17095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_17095 PF00460 Flagella basal body rod protein FR729_17095 PF07559 Flagellar basal body protein FlaE FR729_17100 PF03963 Flagellar hook capping protein - N-terminal region FR729_17100 PF13860 FlgD Ig-like domain FR729_17100 PF13861 FlgD Tudor-like domain FR729_17105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FR729_17105 PF00460 Flagella basal body rod protein FR729_17110 PF00460 Flagella basal body rod protein FR729_17130 PF01464 Transglycosylase SLT domain FR729_17135 PF00133 tRNA synthetases class I (I, L, M and V) FR729_17135 PF08264 Anticodon-binding domain of tRNA FR729_17155 PF03315 Serine dehydratase beta chain FR729_17155 PF03313 Serine dehydratase alpha chain FR729_17165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_17165 PF03466 LysR substrate binding domain FR729_17170 PF03466 LysR substrate binding domain FR729_17170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_17175 PF00691 OmpA family FR729_17175 PF01389 OmpA-like transmembrane domain FR729_17180 PF00246 Zinc carboxypeptidase FR729_17180 PF18027 Cytosolic carboxypeptidase N-terminal domain FR729_17185 PF01266 FAD dependent oxidoreductase FR729_17195 PF04393 Protein of unknown function (DUF535) FR729_17210 PF07702 UTRA domain FR729_17210 PF00392 Bacterial regulatory proteins, gntR family FR729_17215 PF00528 Binding-protein-dependent transport system inner membrane component FR729_17220 PF00005 ABC transporter FR729_17230 PF00266 Aminotransferase class-V FR729_17240 PF13419 Haloacid dehalogenase-like hydrolase FR729_17245 PF00356 Bacterial regulatory proteins, lacI family FR729_17250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FR729_17260 PF03611 PTS system sugar-specific permease component FR729_17270 PF00082 Subtilase family FR729_17270 PF05922 Peptidase inhibitor I9 FR729_17275 PF00657 GDSL-like Lipase/Acylhydrolase FR729_17280 PF00440 Bacterial regulatory proteins, tetR family FR729_17290 PF02321 Outer membrane efflux protein FR729_17295 PF02687 FtsX-like permease family FR729_17295 PF12704 MacB-like periplasmic core domain FR729_17295 PF00005 ABC transporter FR729_17300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_17305 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FR729_17310 PF00194 Eukaryotic-type carbonic anhydrase FR729_17315 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) FR729_17330 PF13419 Haloacid dehalogenase-like hydrolase FR729_17335 PF03466 LysR substrate binding domain FR729_17335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_17370 PF12464 Maltose acetyltransferase FR729_17370 PF14602 Hexapeptide repeat of succinyl-transferase FR729_17375 PF02566 OsmC-like protein FR729_17380 PF01641 SelR domain FR729_17380 PF01625 Peptide methionine sulfoxide reductase FR729_17395 PF04244 Deoxyribodipyrimidine photo-lyase-related protein FR729_17400 PF03441 FAD binding domain of DNA photolyase FR729_17400 PF00875 DNA photolyase FR729_17405 PF00990 Diguanylate cyclase, GGDEF domain FR729_17420 PF00990 Diguanylate cyclase, GGDEF domain FR729_17420 PF05230 MASE2 domain FR729_17435 PF07670 Nucleoside recognition FR729_17435 PF07662 Na+ dependent nucleoside transporter C-terminus FR729_17435 PF01773 Na+ dependent nucleoside transporter N-terminus FR729_17455 PF01212 Beta-eliminating lyase FR729_17460 PF03116 NQR2, RnfD, RnfE family FR729_17465 PF01654 Cytochrome bd terminal oxidase subunit I FR729_17470 PF02322 Cytochrome bd terminal oxidase subunit II FR729_17485 PF01266 FAD dependent oxidoreductase FR729_17505 PF05525 Branched-chain amino acid transport protein FR729_17510 PF00990 Diguanylate cyclase, GGDEF domain FR729_17515 PF02954 Bacterial regulatory protein, Fis family FR729_17515 PF00072 Response regulator receiver domain FR729_17515 PF00158 Sigma-54 interaction domain FR729_17520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_17520 PF00512 His Kinase A (phospho-acceptor) domain FR729_17530 PF00232 Glycosyl hydrolase family 1 FR729_17545 PF03466 LysR substrate binding domain FR729_17545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_17555 PF12706 Beta-lactamase superfamily domain FR729_17570 PF18030 RimK PreATP-grasp domain FR729_17570 PF08443 RimK-like ATP-grasp domain FR729_17575 PF08443 RimK-like ATP-grasp domain FR729_17575 PF18030 RimK PreATP-grasp domain FR729_17580 PF00753 Metallo-beta-lactamase superfamily FR729_17585 PF17810 Arginine decarboxylase helical bundle domain FR729_17585 PF17944 Arginine decarboxylase C-terminal helical extension FR729_17585 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FR729_17590 PF00491 Arginase family FR729_17595 PF07690 Major Facilitator Superfamily FR729_17600 PF00326 Prolyl oligopeptidase family FR729_17600 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FR729_17615 PF00950 ABC 3 transport family FR729_17620 PF00005 ABC transporter FR729_17625 PF01297 Zinc-uptake complex component A periplasmic FR729_17665 PF02472 Biopolymer transport protein ExbD/TolR FR729_17670 PF01618 MotA/TolQ/ExbB proton channel family FR729_17675 PF01618 MotA/TolQ/ExbB proton channel family FR729_17685 PF00593 TonB dependent receptor FR729_17685 PF07715 TonB-dependent Receptor Plug Domain FR729_17690 PF16750 Sensor domain of 2-component histidine kinase FR729_17690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_17690 PF00672 HAMP domain FR729_17690 PF00512 His Kinase A (phospho-acceptor) domain FR729_17695 PF00072 Response regulator receiver domain FR729_17695 PF00486 Transcriptional regulatory protein, C terminal FR729_17700 PF03009 Glycerophosphoryl diester phosphodiesterase family FR729_17715 PF10928 Protein of unknown function (DUF2810) FR729_17770 PF04013 Putative SAM-dependent RNA methyltransferase FR729_17775 PF01523 Putative modulator of DNA gyrase FR729_17785 PF08543 Phosphomethylpyrimidine kinase FR729_17790 PF00005 ABC transporter FR729_17795 PF00528 Binding-protein-dependent transport system inner membrane component FR729_17800 PF09084 NMT1/THI5 like FR729_17805 PF03070 TENA/THI-4/PQQC family FR729_17810 PF02110 Hydroxyethylthiazole kinase family FR729_17815 PF02581 Thiamine monophosphate synthase FR729_17825 PF01568 Molydopterin dinucleotide binding domain FR729_17825 PF00384 Molybdopterin oxidoreductase FR729_17825 PF18364 Molybdopterin oxidoreductase N-terminal domain FR729_17830 PF03264 NapC/NirT cytochrome c family, N-terminal region FR729_17835 PF13302 Acetyltransferase (GNAT) domain FR729_17855 PF00583 Acetyltransferase (GNAT) family FR729_17875 PF00155 Aminotransferase class I and II FR729_17875 PF00392 Bacterial regulatory proteins, gntR family FR729_17880 PF02595 Glycerate kinase family FR729_17885 PF02447 GntP family permease FR729_17890 PF13556 PucR C-terminal helix-turn-helix domain FR729_17890 PF17853 GGDEF-like domain FR729_17890 PF05651 Putative sugar diacid recognition FR729_17925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FR729_17930 PF12706 Beta-lactamase superfamily domain FR729_17940 PF07690 Major Facilitator Superfamily FR729_17945 PF13533 Biotin-lipoyl like FR729_17950 PF03922 OmpW family FR729_17955 PF13599 Pentapeptide repeats (9 copies) FR729_17970 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading FR729_17970 PF18416 N-acetylglucosamine binding protein domain 2 FR729_17975 PF01037 Lrp/AsnC ligand binding domain FR729_17980 PF01810 LysE type translocator FR729_17985 PF04954 Siderophore-interacting protein FR729_17985 PF08021 Siderophore-interacting FAD-binding domain FR729_17990 PF03466 LysR substrate binding domain FR729_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_17995 PF00797 N-acetyltransferase FR729_18000 PF00107 Zinc-binding dehydrogenase FR729_18000 PF08240 Alcohol dehydrogenase GroES-like domain FR729_18005 PF00756 Putative esterase FR729_18015 PF00990 Diguanylate cyclase, GGDEF domain FR729_18015 PF17152 Periplasmic sensor domain FR729_18030 PF03466 LysR substrate binding domain FR729_18030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_18045 PF00849 RNA pseudouridylate synthase FR729_18050 PF01554 MatE FR729_18055 PF00563 EAL domain FR729_18055 PF00990 Diguanylate cyclase, GGDEF domain FR729_18055 PF03707 Bacterial signalling protein N terminal repeat FR729_18065 PF06865 Pyrimidine/purine nucleoside phosphorylase FR729_18075 PF00704 Glycosyl hydrolases family 18 FR729_18075 PF08329 Chitinase A, N-terminal domain FR729_18080 PF12697 Alpha/beta hydrolase family FR729_18095 PF03600 Citrate transporter FR729_18105 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 FR729_18115 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FR729_18115 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FR729_18120 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FR729_18120 PF12833 Helix-turn-helix domain FR729_18120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FR729_18120 PF02805 Metal binding domain of Ada FR729_18130 PF07681 DoxX FR729_18135 PF02678 Pirin FR729_18135 PF17954 Quercetinase C-terminal cupin domain FR729_18140 PF03466 LysR substrate binding domain FR729_18140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_18155 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FR729_18165 PF03616 Sodium/glutamate symporter FR729_18170 PF00392 Bacterial regulatory proteins, gntR family FR729_18170 PF00155 Aminotransferase class I and II FR729_18175 PF00005 ABC transporter FR729_18185 PF03616 Sodium/glutamate symporter FR729_18205 PF00672 HAMP domain FR729_18205 PF17200 Single Cache domain 2 FR729_18205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_18210 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FR729_18220 PF04397 LytTr DNA-binding domain FR729_18220 PF00072 Response regulator receiver domain FR729_18225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_18225 PF13492 GAF domain FR729_18225 PF06580 Histidine kinase FR729_18225 PF07694 5TMR of 5TMR-LYT FR729_18245 PF00005 ABC transporter FR729_18255 PF01098 Cell cycle protein FR729_18260 PF01709 Transcriptional regulator FR729_18270 PF17149 Periplasmic sensor domain found in signal transduction proteins FR729_18270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_18270 PF01627 Hpt domain FR729_18270 PF00072 Response regulator receiver domain FR729_18270 PF00512 His Kinase A (phospho-acceptor) domain FR729_18270 PF00672 HAMP domain FR729_18280 PF08719 Domain of unknown function (DUF1768) FR729_18280 PF00925 GTP cyclohydrolase II FR729_18290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_18290 PF00005 ABC transporter FR729_18295 PF00005 ABC transporter FR729_18295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_18310 PF18607 ParA helix turn helix domain FR729_18310 PF13614 AAA domain FR729_18315 PF08775 ParB family FR729_18315 PF02195 ParB-like nuclease domain FR729_18320 PF05127 Helicase FR729_18320 PF13718 GNAT acetyltransferase 2 FR729_18330 PF00132 Bacterial transferase hexapeptide (six repeats) FR729_18335 PF03466 LysR substrate binding domain FR729_18335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_18340 PF03575 Peptidase family S51 FR729_18345 PF00267 Gram-negative porin FR729_18350 PF02378 Phosphotransferase system, EIIC FR729_18350 PF00367 phosphotransferase system, EIIB FR729_18355 PF01380 SIS domain FR729_18365 PF01380 SIS domain FR729_18365 PF01418 Helix-turn-helix domain, rpiR family FR729_18370 PF00246 Zinc carboxypeptidase FR729_18375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_18380 PF03358 NADPH-dependent FMN reductase FR729_18400 PF00005 ABC transporter FR729_18400 PF00664 ABC transporter transmembrane region FR729_18400 PF03412 Peptidase C39 family FR729_18415 PF00529 HlyD membrane-fusion protein of T1SS FR729_18420 PF00072 Response regulator receiver domain FR729_18420 PF02954 Bacterial regulatory protein, Fis family FR729_18420 PF00158 Sigma-54 interaction domain FR729_18425 PF02743 Cache domain FR729_18425 PF00512 His Kinase A (phospho-acceptor) domain FR729_18425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_18430 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FR729_18430 PF01243 Pyridoxamine 5'-phosphate oxidase FR729_18440 PF12833 Helix-turn-helix domain FR729_18445 PF00171 Aldehyde dehydrogenase family FR729_18445 PF01619 Proline dehydrogenase FR729_18445 PF14850 DNA-binding domain of Proline dehydrogenase FR729_18445 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FR729_18455 PF00474 Sodium:solute symporter family FR729_18485 PF01037 Lrp/AsnC ligand binding domain FR729_18495 PF00005 ABC transporter FR729_18495 PF00664 ABC transporter transmembrane region FR729_18505 PF00271 Helicase conserved C-terminal domain FR729_18505 PF00270 DEAD/DEAH box helicase FR729_18510 PF03475 3-alpha domain FR729_18510 PF03473 MOSC domain FR729_18530 PF08281 Sigma-70, region 4 FR729_18530 PF04542 Sigma-70 region 2 FR729_18535 PF12833 Helix-turn-helix domain FR729_18535 PF01965 DJ-1/PfpI family FR729_18545 PF03466 LysR substrate binding domain FR729_18545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_18565 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_18565 PF13192 Thioredoxin domain FR729_18570 PF10417 C-terminal domain of 1-Cys peroxiredoxin FR729_18570 PF00578 AhpC/TSA family FR729_18575 PF01047 MarR family FR729_18580 PF02566 OsmC-like protein FR729_18620 PF00005 ABC transporter FR729_18640 PF00535 Glycosyl transferase family 2 FR729_18650 PF08241 Methyltransferase domain FR729_18665 PF03625 Domain of unknown function DUF302 FR729_18665 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FR729_18670 PF00367 phosphotransferase system, EIIB FR729_18670 PF02378 Phosphotransferase system, EIIC FR729_18680 PF00072 Response regulator receiver domain FR729_18680 PF00486 Transcriptional regulatory protein, C terminal FR729_18685 PF00512 His Kinase A (phospho-acceptor) domain FR729_18685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_18685 PF08521 Two-component sensor kinase N-terminal FR729_18690 PF01547 Bacterial extracellular solute-binding protein FR729_18695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FR729_18695 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FR729_18700 PF06276 Ferric iron reductase FhuF-like transporter FR729_18700 PF04183 IucA / IucC family FR729_18710 PF04183 IucA / IucC family FR729_18710 PF06276 Ferric iron reductase FhuF-like transporter FR729_18715 PF00206 Lyase FR729_18715 PF02655 ATP-grasp domain FR729_18720 PF00593 TonB dependent receptor FR729_18720 PF07715 TonB-dependent Receptor Plug Domain FR729_18725 PF00593 TonB dependent receptor FR729_18725 PF07660 Secretin and TonB N terminus short domain FR729_18725 PF07715 TonB-dependent Receptor Plug Domain FR729_18730 PF01497 Periplasmic binding protein FR729_18735 PF01032 FecCD transport family FR729_18740 PF01032 FecCD transport family FR729_18745 PF00005 ABC transporter FR729_18750 PF17200 Single Cache domain 2 FR729_18750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_18750 PF00672 HAMP domain FR729_18755 PF05193 Peptidase M16 inactive domain FR729_18755 PF00675 Insulinase (Peptidase family M16) FR729_18765 PF01551 Peptidase family M23 FR729_18765 PF04225 Opacity-associated protein A LysM-like domain FR729_18780 PF07690 Major Facilitator Superfamily FR729_18785 PF02796 Helix-turn-helix domain of resolvase FR729_18785 PF00239 Resolvase, N terminal domain FR729_18790 PF00356 Bacterial regulatory proteins, lacI family FR729_18795 PF00474 Sodium:solute symporter family FR729_18810 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component FR729_18820 PF03480 Bacterial extracellular solute-binding protein, family 7 FR729_18825 PF00356 Bacterial regulatory proteins, lacI family FR729_18830 PF03328 HpcH/HpaI aldolase/citrate lyase family FR729_18835 PF00815 Histidinol dehydrogenase FR729_18850 PF12697 Alpha/beta hydrolase family FR729_18870 PF00474 Sodium:solute symporter family FR729_18875 PF03315 Serine dehydratase beta chain FR729_18875 PF03313 Serine dehydratase alpha chain FR729_18880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FR729_18880 PF00128 Alpha amylase, catalytic domain FR729_18885 PF02264 LamB porin FR729_18900 PF00128 Alpha amylase, catalytic domain FR729_18900 PF16657 Maltogenic Amylase, C-terminal domain FR729_18900 PF02903 Alpha amylase, N-terminal ig-like domain FR729_18905 PF04231 Endonuclease I FR729_18910 PF18494 Pullulanase Ins domain FR729_18910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FR729_18910 PF11852 Domain of unknown function (DUF3372) FR729_18910 PF03714 Bacterial pullanase-associated domain FR729_18910 PF17967 Pullulanase N2 domain FR729_18925 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain FR729_18925 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FR729_18925 PF01276 Orn/Lys/Arg decarboxylase, major domain FR729_18930 PF13520 Amino acid permease FR729_18940 PF08543 Phosphomethylpyrimidine kinase FR729_18945 PF00375 Sodium:dicarboxylate symporter family FR729_18950 PF03193 RsgA GTPase FR729_18955 PF00367 phosphotransferase system, EIIB FR729_18955 PF02378 Phosphotransferase system, EIIC FR729_18960 PF02630 SCO1/SenC FR729_18975 PF00196 Bacterial regulatory proteins, luxR family FR729_18975 PF17874 MalT-like TPR region FR729_18980 PF00343 Carbohydrate phosphorylase FR729_18985 PF02446 4-alpha-glucanotransferase FR729_18990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FR729_18990 PF00128 Alpha amylase, catalytic domain FR729_18990 PF02806 Alpha amylase, C-terminal all-beta domain FR729_18995 PF00912 Transglycosylase FR729_19000 PF00128 Alpha amylase, catalytic domain FR729_19015 PF07670 Nucleoside recognition FR729_19020 PF07670 Nucleoside recognition FR729_19025 PF01546 Peptidase family M20/M25/M40 FR729_19025 PF07687 Peptidase dimerisation domain FR729_19030 PF06803 Protein of unknown function (DUF1232) FR729_19045 PF00375 Sodium:dicarboxylate symporter family FR729_19055 PF03466 LysR substrate binding domain FR729_19055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_19060 PF08803 Putative mono-oxygenase ydhR FR729_19070 PF13614 AAA domain FR729_19070 PF13807 G-rich domain on putative tyrosine kinase FR729_19070 PF02706 Chain length determinant protein FR729_19075 PF01451 Low molecular weight phosphotyrosine protein phosphatase FR729_19080 PF10531 SLBB domain FR729_19080 PF18412 Outer-membrane lipoprotein Wza C-terminal domain FR729_19080 PF02563 Polysaccharide biosynthesis/export protein FR729_19090 PF00881 Nitroreductase family FR729_19095 PF01914 MarC family integral membrane protein FR729_19100 PF01734 Patatin-like phospholipase FR729_19105 PF18416 N-acetylglucosamine binding protein domain 2 FR729_19105 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading FR729_19110 PF02469 Fasciclin domain FR729_19115 PF03441 FAD binding domain of DNA photolyase FR729_19115 PF00875 DNA photolyase FR729_19130 PF00561 alpha/beta hydrolase fold FR729_19135 PF00768 D-alanyl-D-alanine carboxypeptidase FR729_19135 PF07943 Penicillin-binding protein 5, C-terminal domain FR729_19140 PF00128 Alpha amylase, catalytic domain FR729_19140 PF00686 Starch binding domain FR729_19145 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FR729_19145 PF12833 Helix-turn-helix domain FR729_19150 PF00881 Nitroreductase family FR729_19160 PF03466 LysR substrate binding domain FR729_19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_19165 PF09905 DNA-binding protein VF530 FR729_19175 PF00970 Oxidoreductase FAD-binding domain FR729_19175 PF00175 Oxidoreductase NAD-binding domain FR729_19185 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FR729_19190 PF01594 AI-2E family transporter FR729_19200 PF13533 Biotin-lipoyl like FR729_19225 PF00892 EamA-like transporter family FR729_19230 PF03466 LysR substrate binding domain FR729_19230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_19235 PF07690 Major Facilitator Superfamily FR729_19245 PF00583 Acetyltransferase (GNAT) family FR729_19255 PF00072 Response regulator receiver domain FR729_19255 PF00486 Transcriptional regulatory protein, C terminal FR729_19260 PF00512 His Kinase A (phospho-acceptor) domain FR729_19260 PF00672 HAMP domain FR729_19260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_19275 PF00923 Transaldolase/Fructose-6-phosphate aldolase FR729_19280 PF04055 Radical SAM superfamily FR729_19285 PF01228 Glycine radical FR729_19285 PF02901 Pyruvate formate lyase-like FR729_19305 PF08000 Bacterial PH domain FR729_19320 PF13677 Membrane MotB of proton-channel complex MotA/MotB FR729_19320 PF00691 OmpA family FR729_19325 PF01618 MotA/TolQ/ExbB proton channel family FR729_19330 PF04545 Sigma-70, region 4 FR729_19330 PF04542 Sigma-70 region 2 FR729_19335 PF03748 Flagellar basal body-associated protein FliL FR729_19350 PF02561 Flagellar protein FliS FR729_19355 PF02465 Flagellar hook-associated protein 2 N-terminus FR729_19355 PF07195 Flagellar hook-associated protein 2 C-terminus FR729_19355 PF07196 Flagellin hook IN motif FR729_19365 PF00700 Bacterial flagellin C-terminal helical region FR729_19365 PF00669 Bacterial flagellin N-terminal helical region FR729_19375 PF00771 FHIPEP family FR729_19380 PF01312 FlhB HrpN YscU SpaS Family FR729_19385 PF01311 Bacterial export proteins, family 1 FR729_19390 PF01313 Bacterial export proteins, family 3 FR729_19395 PF00813 FliP family FR729_19400 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FR729_19415 PF00158 Sigma-54 interaction domain FR729_19415 PF00072 Response regulator receiver domain FR729_19415 PF02954 Bacterial regulatory protein, Fis family FR729_19420 PF02049 Flagellar hook-basal body complex protein FliE FR729_19425 PF08345 Flagellar M-ring protein C-terminal FR729_19425 PF01514 Secretory protein of YscJ/FliF family FR729_19430 PF14841 FliG middle domain FR729_19430 PF01706 FliG C-terminal domain FR729_19430 PF14842 FliG N-terminal domain FR729_19440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FR729_19440 PF18269 T3SS EscN ATPase C-terminal domain FR729_19455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_19455 PF03466 LysR substrate binding domain FR729_19490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FR729_19495 PF03466 LysR substrate binding domain FR729_19495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_19515 PF00486 Transcriptional regulatory protein, C terminal FR729_19515 PF00072 Response regulator receiver domain FR729_19520 PF00512 His Kinase A (phospho-acceptor) domain FR729_19520 PF00072 Response regulator receiver domain FR729_19520 PF08448 PAS fold FR729_19520 PF13426 PAS domain FR729_19520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_19525 PF00080 Copper/zinc superoxide dismutase (SODC) FR729_19540 PF00563 EAL domain FR729_19540 PF00990 Diguanylate cyclase, GGDEF domain FR729_19540 PF03707 Bacterial signalling protein N terminal repeat FR729_19540 PF13188 PAS domain FR729_19545 PF00155 Aminotransferase class I and II FR729_19550 PF08240 Alcohol dehydrogenase GroES-like domain FR729_19550 PF00107 Zinc-binding dehydrogenase FR729_19580 PF00194 Eukaryotic-type carbonic anhydrase FR729_19585 PF00924 Mechanosensitive ion channel FR729_19595 PF01070 FMN-dependent dehydrogenase FR729_19600 PF02652 L-lactate permease FR729_19605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_19605 PF03466 LysR substrate binding domain FR729_19610 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FR729_19610 PF00326 Prolyl oligopeptidase family FR729_19615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_19615 PF00005 ABC transporter FR729_19625 PF05362 Lon protease (S16) C-terminal proteolytic domain FR729_19625 PF13654 AAA domain FR729_19630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_19630 PF12729 Four helix bundle sensory module for signal transduction FR729_19630 PF00672 HAMP domain FR729_19635 PF13609 Gram-negative porin FR729_19640 PF07238 PilZ domain FR729_19640 PF12945 Flagellar protein YcgR FR729_19655 PF00583 Acetyltransferase (GNAT) family FR729_19660 PF12838 4Fe-4S dicluster domain FR729_19660 PF12800 4Fe-4S binding domain FR729_19665 PF12801 4Fe-4S binding domain FR729_19665 PF13237 4Fe-4S dicluster domain FR729_19685 PF12558 ATP-binding cassette cobalt transporter FR729_19685 PF00005 ABC transporter FR729_19690 PF07155 ECF-type riboflavin transporter, S component FR729_19695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_19695 PF00529 HlyD membrane-fusion protein of T1SS FR729_19700 PF11742 Protein of unknown function (DUF3302) FR729_19705 PF17158 Membrane-associated sensor, integral membrane domain FR729_19705 PF00990 Diguanylate cyclase, GGDEF domain FR729_19720 PF01048 Phosphorylase superfamily FR729_19725 PF08349 Protein of unknown function (DUF1722) FR729_19730 PF13411 MerR HTH family regulatory protein FR729_19735 PF00875 DNA photolyase FR729_19735 PF03441 FAD binding domain of DNA photolyase FR729_19740 PF03734 L,D-transpeptidase catalytic domain FR729_19740 PF01476 LysM domain FR729_19740 PF17969 L,D-transpeptidase C-terminal domain FR729_19750 PF00271 Helicase conserved C-terminal domain FR729_19750 PF00270 DEAD/DEAH box helicase FR729_19755 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FR729_19755 PF00326 Prolyl oligopeptidase family FR729_19760 PF00593 TonB dependent receptor FR729_19760 PF07715 TonB-dependent Receptor Plug Domain FR729_19780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_19780 PF00672 HAMP domain FR729_19785 PF12849 PBP superfamily domain FR729_19790 PF00528 Binding-protein-dependent transport system inner membrane component FR729_19795 PF00528 Binding-protein-dependent transport system inner membrane component FR729_19800 PF00005 ABC transporter FR729_19815 PF07584 Aerotolerance regulator N-terminal FR729_19815 PF13519 von Willebrand factor type A domain FR729_19820 PF13519 von Willebrand factor type A domain FR729_19830 PF01882 Protein of unknown function DUF58 FR729_19835 PF17863 AAA lid domain FR729_19835 PF07726 ATPase family associated with various cellular activities (AAA) FR729_19840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_19840 PF02743 Cache domain FR729_19840 PF00672 HAMP domain FR729_19850 PF00196 Bacterial regulatory proteins, luxR family FR729_19855 PF00196 Bacterial regulatory proteins, luxR family FR729_19865 PF00005 ABC transporter FR729_19865 PF00664 ABC transporter transmembrane region FR729_19870 PF00529 HlyD membrane-fusion protein of T1SS FR729_19880 PF01032 FecCD transport family FR729_19885 PF01497 Periplasmic binding protein FR729_19890 PF00005 ABC transporter FR729_19895 PF00593 TonB dependent receptor FR729_19895 PF07715 TonB-dependent Receptor Plug Domain FR729_19900 PF00005 ABC transporter FR729_19900 PF00664 ABC transporter transmembrane region FR729_19905 PF02702 Osmosensitive K+ channel His kinase sensor domain FR729_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_19905 PF13493 Domain of unknown function (DUF4118) FR729_19905 PF00512 His Kinase A (phospho-acceptor) domain FR729_19910 PF00486 Transcriptional regulatory protein, C terminal FR729_19910 PF00072 Response regulator receiver domain FR729_19915 PF02254 TrkA-N domain FR729_19915 PF02080 TrkA-C domain FR729_19920 PF02386 Cation transport protein FR729_19925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_19925 PF03466 LysR substrate binding domain FR729_19935 PF02028 BCCT, betaine/carnitine/choline family transporter FR729_19940 PF00848 Ring hydroxylating alpha subunit (catalytic domain) FR729_19940 PF00355 Rieske [2Fe-2S] domain FR729_19945 PF00171 Aldehyde dehydrogenase family FR729_19950 PF18113 Rubredoxin binding C-terminal domain FR729_19950 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_19955 PF01266 FAD dependent oxidoreductase FR729_19965 PF00127 Copper binding proteins, plastocyanin/azurin family FR729_19970 PF13419 Haloacid dehalogenase-like hydrolase FR729_19980 PF01590 GAF domain FR729_19980 PF00158 Sigma-54 interaction domain FR729_19985 PF00258 Flavodoxin FR729_19985 PF00301 Rubredoxin FR729_19985 PF00753 Metallo-beta-lactamase superfamily FR729_19990 PF18113 Rubredoxin binding C-terminal domain FR729_19990 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_20000 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FR729_20000 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FR729_20005 PF06628 Catalase-related immune-responsive FR729_20005 PF00199 Catalase FR729_20010 PF13417 Glutathione S-transferase, N-terminal domain FR729_20015 PF00107 Zinc-binding dehydrogenase FR729_20015 PF16884 N-terminal domain of oxidoreductase FR729_20020 PF16925 Tetracyclin repressor-like, C-terminal domain FR729_20020 PF00440 Bacterial regulatory proteins, tetR family FR729_20055 PF00534 Glycosyl transferases group 1 FR729_20055 PF13439 Glycosyltransferase Family 4 FR729_20065 PF13614 AAA domain FR729_20065 PF13807 G-rich domain on putative tyrosine kinase FR729_20065 PF02706 Chain length determinant protein FR729_20080 PF02397 Bacterial sugar transferase FR729_20085 PF00005 ABC transporter FR729_20085 PF08402 TOBE domain FR729_20090 PF01547 Bacterial extracellular solute-binding protein FR729_20095 PF14785 Maltose transport system permease protein MalF P2 domain FR729_20095 PF00528 Binding-protein-dependent transport system inner membrane component FR729_20100 PF00528 Binding-protein-dependent transport system inner membrane component FR729_20130 PF05661 Protein of unknown function (DUF808) FR729_20135 PF01979 Amidohydrolase family FR729_20145 PF01679 Proteolipid membrane potential modulator FR729_20150 PF03473 MOSC domain FR729_20150 PF00111 2Fe-2S iron-sulfur cluster binding domain FR729_20150 PF00111 2Fe-2S iron-sulfur cluster binding domain FR729_20150 PF03476 MOSC N-terminal beta barrel domain FR729_20150 PF03473 MOSC domain FR729_20150 PF03476 MOSC N-terminal beta barrel domain FR729_20155 PF02540 NAD synthase FR729_20160 PF01467 Cytidylyltransferase-like FR729_20200 PF00005 ABC transporter FR729_20205 PF01032 FecCD transport family FR729_20215 PF02472 Biopolymer transport protein ExbD/TolR FR729_20220 PF01618 MotA/TolQ/ExbB proton channel family FR729_20225 PF03544 Gram-negative bacterial TonB protein C-terminal FR729_20230 PF04055 Radical SAM superfamily FR729_20235 PF06228 Haem utilisation ChuX/HutX FR729_20240 PF01243 Pyridoxamine 5'-phosphate oxidase FR729_20255 PF00072 Response regulator receiver domain FR729_20255 PF01584 CheW-like domain FR729_20265 PF01554 MatE FR729_20270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_20270 PF00005 ABC transporter FR729_20275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FR729_20275 PF00005 ABC transporter FR729_20280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_20285 PF00528 Binding-protein-dependent transport system inner membrane component FR729_20290 PF00455 DeoR C terminal sensor domain FR729_20290 PF08220 DeoR-like helix-turn-helix domain FR729_20295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FR729_20295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FR729_20300 PF07005 Sugar-binding N-terminal domain FR729_20300 PF17042 Nucleotide-binding C-terminal domain FR729_20305 PF00596 Class II Aldolase and Adducin N-terminal domain FR729_20310 PF01261 Xylose isomerase-like TIM barrel FR729_20315 PF01370 NAD dependent epimerase/dehydratase family FR729_20320 PF02447 GntP family permease FR729_20325 PF02583 Metal-sensitive transcriptional repressor FR729_20330 PF03824 High-affinity nickel-transport protein FR729_20340 PF02743 Cache domain FR729_20340 PF00672 HAMP domain FR729_20340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_20345 PF03466 LysR substrate binding domain FR729_20350 PF17848 Acetyl-coA carboxylase zinc finger domain FR729_20350 PF01039 Carboxyl transferase domain FR729_20360 PF04151 Bacterial pre-peptidase C-terminal domain FR729_20360 PF08453 Peptidase family M9 N-terminal FR729_20360 PF01752 Collagenase FR729_20370 PF02627 Carboxymuconolactone decarboxylase family FR729_20375 PF13411 MerR HTH family regulatory protein FR729_20380 PF00128 Alpha amylase, catalytic domain FR729_20395 PF02254 TrkA-N domain FR729_20395 PF00999 Sodium/hydrogen exchanger family FR729_20400 PF02525 Flavodoxin-like fold FR729_20405 PF00582 Universal stress protein family FR729_20410 PF12848 ABC transporter FR729_20410 PF16326 ABC transporter C-terminal domain FR729_20410 PF00005 ABC transporter FR729_20415 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FR729_20415 PF00326 Prolyl oligopeptidase family FR729_20425 PF13533 Biotin-lipoyl like FR729_20430 PF00873 AcrB/AcrD/AcrF family FR729_20435 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FR729_20445 PF13302 Acetyltransferase (GNAT) domain FR729_20455 PF00990 Diguanylate cyclase, GGDEF domain FR729_20455 PF17151 Periplasmic sensor domain FR729_20470 PF00873 AcrB/AcrD/AcrF family FR729_20475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_20490 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FR729_20490 PF12838 4Fe-4S dicluster domain FR729_20490 PF01568 Molydopterin dinucleotide binding domain FR729_20490 PF00384 Molybdopterin oxidoreductase FR729_20490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FR729_20505 PF00005 ABC transporter FR729_20515 PF02567 Phenazine biosynthesis-like protein FR729_20520 PF01161 Phosphatidylethanolamine-binding protein FR729_20530 PF01758 Sodium Bile acid symporter family FR729_20545 PF01638 HxlR-like helix-turn-helix FR729_20565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_20565 PF03466 LysR substrate binding domain FR729_20570 PF00248 Aldo/keto reductase family FR729_20575 PF03928 Haem-degrading FR729_20595 PF03222 Tryptophan/tyrosine permease family FR729_20605 PF02743 Cache domain FR729_20605 PF00672 HAMP domain FR729_20605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_20635 PF01476 LysM domain FR729_20635 PF08525 Opacity-associated protein A N-terminal motif FR729_20635 PF01551 Peptidase family M23 FR729_20640 PF00990 Diguanylate cyclase, GGDEF domain FR729_20640 PF08447 PAS fold FR729_20640 PF08448 PAS fold FR729_20640 PF00563 EAL domain FR729_20645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_20645 PF03466 LysR substrate binding domain FR729_20650 PF07690 Major Facilitator Superfamily FR729_20665 PF00462 Glutaredoxin FR729_20670 PF00892 EamA-like transporter family FR729_20675 PF00267 Gram-negative porin FR729_20685 PF01557 Fumarylacetoacetate (FAA) hydrolase family FR729_20705 PF01810 LysE type translocator FR729_20720 PF02790 Cytochrome C oxidase subunit II, transmembrane domain FR729_20720 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FR729_20725 PF00115 Cytochrome C and Quinol oxidase polypeptide I FR729_20730 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 FR729_20735 PF00510 Cytochrome c oxidase subunit III FR729_20755 PF02628 Cytochrome oxidase assembly protein FR729_20760 PF01040 UbiA prenyltransferase family FR729_20765 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FR729_20765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FR729_20775 PF00691 OmpA family FR729_20775 PF05736 OprF membrane domain FR729_20795 PF00313 'Cold-shock' DNA-binding domain FR729_20800 PF03889 Alternative ribosome-rescue factor A FR729_20805 PF00990 Diguanylate cyclase, GGDEF domain FR729_20810 PF00140 Sigma-70 factor, region 1.2 FR729_20810 PF04542 Sigma-70 region 2 FR729_20810 PF04545 Sigma-70, region 4 FR729_20810 PF04539 Sigma-70 region 3 FR729_20820 PF00664 ABC transporter transmembrane region FR729_20820 PF00005 ABC transporter FR729_20825 PF00664 ABC transporter transmembrane region FR729_20825 PF00005 ABC transporter FR729_20830 PF02321 Outer membrane efflux protein FR729_20835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_20835 PF00072 Response regulator receiver domain FR729_20840 PF13533 Biotin-lipoyl like FR729_20860 PF00672 HAMP domain FR729_20860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_20860 PF17200 Single Cache domain 2 FR729_20865 PF00210 Ferritin-like domain FR729_20875 PF07995 Glucose / Sorbosone dehydrogenase FR729_20880 PF00465 Iron-containing alcohol dehydrogenase FR729_20890 PF00892 EamA-like transporter family FR729_20900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_20900 PF03466 LysR substrate binding domain FR729_20910 PF00501 AMP-binding enzyme FR729_20910 PF13193 AMP-binding enzyme C-terminal domain FR729_20915 PF00351 Biopterin-dependent aromatic amino acid hydroxylase FR729_20920 PF01329 Pterin 4 alpha carbinolamine dehydratase FR729_20940 PF12843 Putative quorum-sensing-regulated virulence factor FR729_20950 PF01810 LysE type translocator FR729_20955 PF07729 FCD domain FR729_20955 PF00392 Bacterial regulatory proteins, gntR family FR729_20970 PF01810 LysE type translocator FR729_20985 PF01925 Sulfite exporter TauE/SafE FR729_20995 PF00271 Helicase conserved C-terminal domain FR729_20995 PF00270 DEAD/DEAH box helicase FR729_21000 PF09905 DNA-binding protein VF530 FR729_21010 PF00291 Pyridoxal-phosphate dependent enzyme FR729_21020 PF00313 'Cold-shock' DNA-binding domain FR729_21030 PF01470 Pyroglutamyl peptidase FR729_21040 PF02492 CobW/HypB/UreG, nucleotide-binding domain FR729_21040 PF07683 Cobalamin synthesis protein cobW C-terminal domain FR729_21045 PF00271 Helicase conserved C-terminal domain FR729_21045 PF00270 DEAD/DEAH box helicase FR729_21065 PF12792 CSS motif domain associated with EAL FR729_21065 PF00563 EAL domain FR729_21070 PF00005 ABC transporter FR729_21075 PF00672 HAMP domain FR729_21075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_21075 PF12729 Four helix bundle sensory module for signal transduction FR729_21085 PF01575 MaoC like domain FR729_21095 PF12849 PBP superfamily domain FR729_21105 PF12833 Helix-turn-helix domain FR729_21110 PF00773 RNB domain FR729_21110 PF08206 Ribonuclease B OB domain FR729_21110 PF00575 S1 RNA binding domain FR729_21115 PF00271 Helicase conserved C-terminal domain FR729_21115 PF00270 DEAD/DEAH box helicase FR729_21115 PF03880 DbpA RNA binding domain FR729_21120 PF00563 EAL domain FR729_21120 PF00990 Diguanylate cyclase, GGDEF domain FR729_21120 PF03707 Bacterial signalling protein N terminal repeat FR729_21130 PF00871 Acetokinase family FR729_21135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_21135 PF03466 LysR substrate binding domain FR729_21140 PF12146 Serine aminopeptidase, S33 FR729_21145 PF12146 Serine aminopeptidase, S33 FR729_21160 PF00155 Aminotransferase class I and II FR729_21165 PF01037 Lrp/AsnC ligand binding domain FR729_21170 PF00107 Zinc-binding dehydrogenase FR729_21170 PF08240 Alcohol dehydrogenase GroES-like domain FR729_21175 PF14748 Pyrroline-5-carboxylate reductase dimerisation FR729_21175 PF03807 NADP oxidoreductase coenzyme F420-dependent FR729_21180 PF08447 PAS fold FR729_21180 PF13426 PAS domain FR729_21180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_21185 PF00528 Binding-protein-dependent transport system inner membrane component FR729_21190 PF00571 CBS domain FR729_21190 PF00005 ABC transporter FR729_21195 PF00528 Binding-protein-dependent transport system inner membrane component FR729_21200 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FR729_21205 PF00795 Carbon-nitrogen hydrolase FR729_21215 PF12833 Helix-turn-helix domain FR729_21215 PF01965 DJ-1/PfpI family FR729_21220 PF00561 alpha/beta hydrolase fold FR729_21225 PF04909 Amidohydrolase FR729_21230 PF13183 4Fe-4S dicluster domain FR729_21230 PF01565 FAD binding domain FR729_21230 PF02913 FAD linked oxidases, C-terminal domain FR729_21240 PF00682 HMGL-like FR729_21245 PF00378 Enoyl-CoA hydratase/isomerase FR729_21250 PF01039 Carboxyl transferase domain FR729_21255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FR729_21255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FR729_21255 PF02770 Acyl-CoA dehydrogenase, middle domain FR729_21260 PF09278 MerR, DNA binding FR729_21260 PF00376 MerR family regulatory protein FR729_21265 PF02803 Thiolase, C-terminal domain FR729_21265 PF00108 Thiolase, N-terminal domain FR729_21270 PF00171 Aldehyde dehydrogenase family FR729_21275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FR729_21275 PF02770 Acyl-CoA dehydrogenase, middle domain FR729_21275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FR729_21280 PF00378 Enoyl-CoA hydratase/isomerase FR729_21285 PF00378 Enoyl-CoA hydratase/isomerase FR729_21290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FR729_21290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FR729_21300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain FR729_21300 PF06481 COX Aromatic Rich Motif FR729_21305 PF00115 Cytochrome C and Quinol oxidase polypeptide I FR729_21310 PF00510 Cytochrome c oxidase subunit III FR729_21315 PF03626 Prokaryotic Cytochrome C oxidase subunit IV FR729_21320 PF01040 UbiA prenyltransferase family FR729_21325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FR729_21325 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_21340 PF00171 Aldehyde dehydrogenase family FR729_21350 PF02028 BCCT, betaine/carnitine/choline family transporter FR729_21380 PF00005 ABC transporter FR729_21385 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_21390 PF00528 Binding-protein-dependent transport system inner membrane component FR729_21395 PF00528 Binding-protein-dependent transport system inner membrane component FR729_21405 PF03466 LysR substrate binding domain FR729_21405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_21410 PF13417 Glutathione S-transferase, N-terminal domain FR729_21410 PF00043 Glutathione S-transferase, C-terminal domain FR729_21420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_21420 PF03466 LysR substrate binding domain FR729_21430 PF01012 Electron transfer flavoprotein domain FR729_21430 PF00766 Electron transfer flavoprotein FAD-binding domain FR729_21435 PF02817 e3 binding domain FR729_21435 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FR729_21435 PF00364 Biotin-requiring enzyme FR729_21440 PF02780 Transketolase, C-terminal domain FR729_21440 PF02779 Transketolase, pyrimidine binding domain FR729_21445 PF00676 Dehydrogenase E1 component FR729_21465 PF00474 Sodium:solute symporter family FR729_21470 PF07733 Bacterial DNA polymerase III alpha NTPase domain FR729_21470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FR729_21470 PF14579 Helix-hairpin-helix motif FR729_21470 PF00929 Exonuclease FR729_21470 PF02811 PHP domain FR729_21470 PF11490 DNA polymerase III polC-type N-terminus II FR729_21475 PF00571 CBS domain FR729_21480 PF07729 FCD domain FR729_21480 PF00392 Bacterial regulatory proteins, gntR family FR729_21485 PF00392 Bacterial regulatory proteins, gntR family FR729_21485 PF07729 FCD domain FR729_21495 PF08787 Alginate lyase FR729_21510 PF08787 Alginate lyase FR729_21515 PF08787 Alginate lyase FR729_21520 PF07940 Heparinase II/III-like protein FR729_21520 PF05426 Alginate lyase FR729_21525 PF07940 Heparinase II/III-like protein FR729_21525 PF05426 Alginate lyase FR729_21530 PF07883 Cupin domain FR729_21535 PF00294 pfkB family carbohydrate kinase FR729_21540 PF01081 KDPG and KHG aldolase FR729_21550 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain FR729_21550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FR729_21560 PF04314 Copper chaperone PCu(A)C FR729_21585 PF00072 Response regulator receiver domain FR729_21585 PF00486 Transcriptional regulatory protein, C terminal FR729_21605 PF01483 Proprotein convertase P-domain FR729_21605 PF00082 Subtilase family FR729_21615 PF07694 5TMR of 5TMR-LYT FR729_21615 PF00990 Diguanylate cyclase, GGDEF domain FR729_21625 PF03222 Tryptophan/tyrosine permease family FR729_21635 PF01568 Molydopterin dinucleotide binding domain FR729_21635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FR729_21635 PF00384 Molybdopterin oxidoreductase FR729_21640 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FR729_21640 PF14824 Sirohaem biosynthesis protein central FR729_21640 PF10414 Sirohaem synthase dimerisation region FR729_21645 PF02885 Glycosyl transferase family, helical bundle domain FR729_21645 PF00591 Glycosyl transferase family, a/b domain FR729_21650 PF01738 Dienelactone hydrolase family FR729_21655 PF00072 Response regulator receiver domain FR729_21655 PF03861 ANTAR domain FR729_21665 PF00005 ABC transporter FR729_21670 PF00528 Binding-protein-dependent transport system inner membrane component FR729_21675 PF00005 ABC transporter FR729_21680 PF18267 Rubredoxin NAD+ reductase C-terminal domain FR729_21680 PF04324 BFD-like [2Fe-2S] binding domain FR729_21680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FR729_21680 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_21680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FR729_21680 PF13806 Rieske-like [2Fe-2S] domain FR729_21710 PF00072 Response regulator receiver domain FR729_21710 PF00211 Adenylate and Guanylate cyclase catalytic domain FR729_21730 PF00069 Protein kinase domain FR729_21730 PF03793 PASTA domain FR729_21750 PF00691 OmpA family FR729_21750 PF13677 Membrane MotB of proton-channel complex MotA/MotB FR729_21810 PF00004 ATPase family associated with various cellular activities (AAA) FR729_21810 PF07724 AAA domain (Cdc48 subfamily) FR729_21810 PF17871 AAA lid domain FR729_21810 PF10431 C-terminal, D2-small domain, of ClpB protein FR729_21820 PF04717 Type VI secretion system, phage-baseplate injector FR729_21820 PF16671 Actin cross-linking domain FR729_21835 PF00149 Calcineurin-like phosphoesterase FR729_21835 PF12320 Type 5 capsule protein repressor C-terminal domain FR729_21840 PF13476 AAA domain FR729_21850 PF08212 Lipocalin-like domain FR729_21860 PF03606 C4-dicarboxylate anaerobic carrier FR729_21870 PF01212 Beta-eliminating lyase FR729_21880 PF12592 Protein of unknown function (DUF3763) FR729_21880 PF07728 AAA domain (dynein-related subfamily) FR729_21880 PF17868 AAA lid domain FR729_21885 PF05762 VWA domain containing CoxE-like protein FR729_21900 PF03466 LysR substrate binding domain FR729_21900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_21905 PF09330 D-lactate dehydrogenase, membrane binding FR729_21905 PF01565 FAD binding domain FR729_21920 PF01168 Alanine racemase, N-terminal domain FR729_21920 PF00842 Alanine racemase, C-terminal domain FR729_21925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_21925 PF00672 HAMP domain FR729_21940 PF00128 Alpha amylase, catalytic domain FR729_21940 PF09154 Domain of unknown function (DUF1939) FR729_21995 PF13426 PAS domain FR729_21995 PF00563 EAL domain FR729_21995 PF00990 Diguanylate cyclase, GGDEF domain FR729_22005 PF01272 Transcription elongation factor, GreA/GreB, C-term FR729_22005 PF14760 Rnk N-terminus FR729_22010 PF04324 BFD-like [2Fe-2S] binding domain FR729_22010 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_22010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FR729_22010 PF18267 Rubredoxin NAD+ reductase C-terminal domain FR729_22010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FR729_22015 PF13806 Rieske-like [2Fe-2S] domain FR729_22020 PF01226 Formate/nitrite transporter FR729_22025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FR729_22025 PF14824 Sirohaem biosynthesis protein central FR729_22025 PF10414 Sirohaem synthase dimerisation region FR729_22040 PF03605 Anaerobic c4-dicarboxylate membrane transporter FR729_22055 PF07715 TonB-dependent Receptor Plug Domain FR729_22055 PF00593 TonB dependent receptor FR729_22065 PF13302 Acetyltransferase (GNAT) domain FR729_22070 PF11756 Nitrous oxide-stimulated promoter FR729_22075 PF07690 Major Facilitator Superfamily FR729_22080 PF00085 Thioredoxin FR729_22085 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FR729_22085 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FR729_22105 PF01238 Phosphomannose isomerase type I FR729_22110 PF07690 Major Facilitator Superfamily FR729_22115 PF05231 MASE1 FR729_22115 PF07730 Histidine kinase FR729_22115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_22120 PF00072 Response regulator receiver domain FR729_22120 PF00196 Bacterial regulatory proteins, luxR family FR729_22125 PF07690 Major Facilitator Superfamily FR729_22130 PF02634 FdhD/NarQ family FR729_22135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_22135 PF03466 LysR substrate binding domain FR729_22145 PF00384 Molybdopterin oxidoreductase FR729_22160 PF02567 Phenazine biosynthesis-like protein FR729_22165 PF01177 Asp/Glu/Hydantoin racemase FR729_22170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FR729_22170 PF07992 Pyridine nucleotide-disulphide oxidoreductase FR729_22195 PF13597 Anaerobic ribonucleoside-triphosphate reductase FR729_22195 PF03477 ATP cone domain FR729_22205 PF01554 MatE FR729_22210 PF12852 Cupin FR729_22210 PF12833 Helix-turn-helix domain FR729_22215 PF00155 Aminotransferase class I and II FR729_22220 PF08443 RimK-like ATP-grasp domain FR729_22220 PF18030 RimK PreATP-grasp domain FR729_22230 PF04076 Bacterial OB fold (BOF) protein FR729_22235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FR729_22235 PF07685 CobB/CobQ-like glutamine amidotransferase domain FR729_22245 PF00528 Binding-protein-dependent transport system inner membrane component FR729_22250 PF00005 ABC transporter FR729_22250 PF03459 TOBE domain FR729_22260 PF00360 Phytochrome region FR729_22260 PF00990 Diguanylate cyclase, GGDEF domain FR729_22260 PF01590 GAF domain FR729_22260 PF00563 EAL domain FR729_22265 PF00990 Diguanylate cyclase, GGDEF domain FR729_22265 PF00072 Response regulator receiver domain FR729_22280 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FR729_22280 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FR729_22280 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FR729_22285 PF02233 NAD(P) transhydrogenase beta subunit FR729_22295 PF00072 Response regulator receiver domain FR729_22295 PF00486 Transcriptional regulatory protein, C terminal FR729_22310 PF03701 Uncharacterised protein family (UPF0181) FR729_22325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_22325 PF03466 LysR substrate binding domain FR729_22415 PF01253 Translation initiation factor SUI1 FR729_22425 PF07478 D-ala D-ala ligase C-terminus FR729_22425 PF01820 D-ala D-ala ligase N-terminus FR729_22430 PF05036 Sporulation related domain FR729_22435 PF00583 Acetyltransferase (GNAT) family FR729_22435 PF13607 Succinyl-CoA ligase like flavodoxin domain FR729_22435 PF13380 CoA binding domain FR729_22440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_22440 PF03466 LysR substrate binding domain FR729_22445 PF07715 TonB-dependent Receptor Plug Domain FR729_22445 PF00593 TonB dependent receptor FR729_22445 PF04886 PT repeat FR729_22455 PF16363 GDP-mannose 4,6 dehydratase FR729_22460 PF00990 Diguanylate cyclase, GGDEF domain FR729_22460 PF13426 PAS domain FR729_22460 PF08448 PAS fold FR729_22460 PF08447 PAS fold FR729_22460 PF05231 MASE1 FR729_22460 PF00563 EAL domain FR729_22465 PF03746 LamB/YcsF family FR729_22470 PF02682 Carboxyltransferase domain, subdomain C and D FR729_22475 PF02626 Carboxyltransferase domain, subdomain A and B FR729_22490 PF00005 ABC transporter FR729_22495 PF13472 GDSL-like Lipase/Acylhydrolase family FR729_22500 PF12241 Trans-2-enoyl-CoA reductase catalytic region FR729_22500 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FR729_22500 PF07055 Enoyl reductase FAD binding domain FR729_22505 PF13188 PAS domain FR729_22505 PF00563 EAL domain FR729_22505 PF00990 Diguanylate cyclase, GGDEF domain FR729_22505 PF03707 Bacterial signalling protein N terminal repeat FR729_22515 PF01556 DnaJ C terminal domain FR729_22515 PF00684 DnaJ central domain FR729_22515 PF00226 DnaJ domain FR729_22540 PF12793 Sugar transport-related sRNA regulator N-term FR729_22540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FR729_22550 PF03061 Thioesterase superfamily FR729_22565 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FR729_22570 PF12262 Bacterial virulence factor lipase N-terminal FR729_22590 PF03741 Integral membrane protein TerC family FR729_22595 PF02872 5'-nucleotidase, C-terminal domain FR729_22595 PF00149 Calcineurin-like phosphoesterase FR729_22600 PF11398 Protein of unknown function (DUF2813) FR729_22605 PF06496 Protein of unknown function (DUF1097) FR729_22610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_22610 PF03466 LysR substrate binding domain FR729_22615 PF01226 Formate/nitrite transporter FR729_22620 PF04264 YceI-like domain FR729_22625 PF01292 Prokaryotic cytochrome b561 FR729_22645 PF00270 DEAD/DEAH box helicase FR729_22645 PF00271 Helicase conserved C-terminal domain FR729_22650 PF04336 Acyl carrier protein phosphodiesterase FR729_22660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_22660 PF00672 HAMP domain FR729_22660 PF12729 Four helix bundle sensory module for signal transduction FR729_22670 PF13419 Haloacid dehalogenase-like hydrolase FR729_22685 PF00294 pfkB family carbohydrate kinase FR729_22690 PF01268 Formate--tetrahydrofolate ligase FR729_22695 PF00483 Nucleotidyl transferase FR729_22700 PF06483 Chitinase C FR729_22700 PF00704 Glycosyl hydrolases family 18 FR729_22710 PF06719 AraC-type transcriptional regulator N-terminus FR729_22710 PF12833 Helix-turn-helix domain FR729_22715 PF00465 Iron-containing alcohol dehydrogenase FR729_22725 PF00005 ABC transporter FR729_22730 PF00528 Binding-protein-dependent transport system inner membrane component FR729_22735 PF00497 Bacterial extracellular solute-binding proteins, family 3 FR729_22740 PF00528 Binding-protein-dependent transport system inner membrane component FR729_22745 PF00989 PAS fold FR729_22745 PF00990 Diguanylate cyclase, GGDEF domain FR729_22745 PF01590 GAF domain FR729_22745 PF00563 EAL domain FR729_22760 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FR729_22760 PF00356 Bacterial regulatory proteins, lacI family FR729_22765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FR729_22765 PF00381 PTS HPr component phosphorylation site FR729_22770 PF00294 pfkB family carbohydrate kinase FR729_22775 PF02378 Phosphotransferase system, EIIC FR729_22775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FR729_22785 PF00873 AcrB/AcrD/AcrF family FR729_22805 PF01571 Aminomethyltransferase folate-binding domain FR729_22805 PF08669 Glycine cleavage T-protein C-terminal barrel domain FR729_22815 PF00464 Serine hydroxymethyltransferase FR729_22820 PF01597 Glycine cleavage H-protein FR729_22825 PF02347 Glycine cleavage system P-protein FR729_22830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FR729_22845 PF16123 Hydroxyacylglutathione hydrolase C-terminus FR729_22845 PF00753 Metallo-beta-lactamase superfamily FR729_22850 PF03466 LysR substrate binding domain FR729_22850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_22855 PF00892 EamA-like transporter family FR729_22860 PF02627 Carboxymuconolactone decarboxylase family FR729_22865 PF12833 Helix-turn-helix domain FR729_22885 PF14579 Helix-hairpin-helix motif FR729_22885 PF00929 Exonuclease FR729_22885 PF02811 PHP domain FR729_22885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FR729_22885 PF07733 Bacterial DNA polymerase III alpha NTPase domain FR729_22885 PF11490 DNA polymerase III polC-type N-terminus II FR729_22895 PF00664 ABC transporter transmembrane region FR729_22895 PF00005 ABC transporter FR729_22915 PF02253 Phospholipase A1 FR729_22925 PF00376 MerR family regulatory protein FR729_22925 PF09278 MerR, DNA binding FR729_22930 PF01327 Polypeptide deformylase FR729_22970 PF01769 Divalent cation transporter FR729_22970 PF00571 CBS domain FR729_22970 PF03448 MgtE intracellular N domain FR729_22990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FR729_22995 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FR729_23005 PF01757 Acyltransferase family FR729_23015 PF09722 Protein of unknown function (DUF2384) FR729_23020 PF00141 Peroxidase FR729_23025 PF01645 Conserved region in glutamate synthase FR729_23025 PF13187 4Fe-4S dicluster domain FR729_23035 PF00171 Aldehyde dehydrogenase family FR729_23050 PF00892 EamA-like transporter family FR729_23055 PF00893 Small Multidrug Resistance protein FR729_23075 PF00892 EamA-like transporter family FR729_23085 PF08334 Type II secretion system (T2SS), protein G FR729_23085 PF07963 Prokaryotic N-terminal methylation motif FR729_23090 PF01584 CheW-like domain FR729_23090 PF00072 Response regulator receiver domain FR729_23100 PF00072 Response regulator receiver domain FR729_23100 PF00196 Bacterial regulatory proteins, luxR family FR729_23110 PF00990 Diguanylate cyclase, GGDEF domain FR729_23115 PF00072 Response regulator receiver domain FR729_23115 PF00196 Bacterial regulatory proteins, luxR family FR729_23120 PF00563 EAL domain FR729_23120 PF00990 Diguanylate cyclase, GGDEF domain FR729_23120 PF03707 Bacterial signalling protein N terminal repeat FR729_23120 PF13188 PAS domain FR729_23125 PF00512 His Kinase A (phospho-acceptor) domain FR729_23125 PF00072 Response regulator receiver domain FR729_23125 PF09456 RcsC Alpha-Beta-Loop (ABL) FR729_23125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_23130 PF01926 50S ribosome-binding GTPase FR729_23135 PF00155 Aminotransferase class I and II FR729_23140 PF00072 Response regulator receiver domain FR729_23140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_23150 PF00583 Acetyltransferase (GNAT) family FR729_23150 PF00814 Glycoprotease family FR729_23160 PF03606 C4-dicarboxylate anaerobic carrier FR729_23175 PF08774 VRR-NUC domain FR729_23175 PF18081 Fanconi anemia-associated nuclease SAP domain FR729_23185 PF04076 Bacterial OB fold (BOF) protein FR729_23190 PF00781 Diacylglycerol kinase catalytic domain FR729_23195 PF03466 LysR substrate binding domain FR729_23195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_23200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FR729_23215 PF00092 von Willebrand factor type A domain FR729_23230 PF17863 AAA lid domain FR729_23230 PF07726 ATPase family associated with various cellular activities (AAA) FR729_23235 PF13186 Iron-sulfur cluster-binding domain FR729_23235 PF04055 Radical SAM superfamily FR729_23240 PF00884 Sulfatase FR729_23240 PF16385 Domain of unknown function FR729_23245 PF03466 LysR substrate binding domain FR729_23245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_23250 PF00884 Sulfatase FR729_23255 PF00072 Response regulator receiver domain FR729_23255 PF00486 Transcriptional regulatory protein, C terminal FR729_23270 PF00672 HAMP domain FR729_23270 PF00072 Response regulator receiver domain FR729_23270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_23270 PF01627 Hpt domain FR729_23270 PF00512 His Kinase A (phospho-acceptor) domain FR729_23275 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FR729_23280 PF02142 MGS-like domain FR729_23285 PF12462 DNA helicase IV / RNA helicase N terminal FR729_23285 PF00580 UvrD/REP helicase N-terminal domain FR729_23285 PF13361 UvrD-like helicase C-terminal domain FR729_23290 PF12805 FUSC-like inner membrane protein yccS FR729_23325 PF07715 TonB-dependent Receptor Plug Domain FR729_23325 PF00593 TonB dependent receptor FR729_23335 PF13411 MerR HTH family regulatory protein FR729_23340 PF00005 ABC transporter FR729_23345 PF01032 FecCD transport family FR729_23350 PF01032 FecCD transport family FR729_23355 PF01497 Periplasmic binding protein FR729_23365 PF01048 Phosphorylase superfamily FR729_23370 PF04973 Nicotinamide mononucleotide transporter FR729_23380 PF00356 Bacterial regulatory proteins, lacI family FR729_23385 PF00294 pfkB family carbohydrate kinase FR729_23390 PF13407 Periplasmic binding protein domain FR729_23395 PF02653 Branched-chain amino acid transport system / permease component FR729_23400 PF00005 ABC transporter FR729_23405 PF05025 RbsD / FucU transport protein family FR729_23410 PF00563 EAL domain FR729_23410 PF00990 Diguanylate cyclase, GGDEF domain FR729_23455 PF04116 Fatty acid hydroxylase superfamily FR729_23465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain FR729_23465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase FR729_23475 PF09308 LuxQ, periplasmic FR729_23475 PF00512 His Kinase A (phospho-acceptor) domain FR729_23475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_23475 PF00072 Response regulator receiver domain FR729_23480 PF03150 Di-haem cytochrome c peroxidase FR729_23480 PF00034 Cytochrome c FR729_23490 PF16200 C-terminal region of band_7 FR729_23490 PF01145 SPFH domain / Band 7 family FR729_23500 PF00881 Nitroreductase family FR729_23505 PF00005 ABC transporter FR729_23505 PF00571 CBS domain FR729_23510 PF00528 Binding-protein-dependent transport system inner membrane component FR729_23515 PF04069 Substrate binding domain of ABC-type glycine betaine transport system FR729_23520 PF05199 GMC oxidoreductase FR729_23520 PF00732 GMC oxidoreductase FR729_23525 PF00171 Aldehyde dehydrogenase family FR729_23530 PF00440 Bacterial regulatory proteins, tetR family FR729_23530 PF13977 BetI-type transcriptional repressor, C-terminal FR729_23535 PF00990 Diguanylate cyclase, GGDEF domain FR729_23535 PF00072 Response regulator receiver domain FR729_23545 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FR729_23545 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FR729_23555 PF00378 Enoyl-CoA hydratase/isomerase FR729_23560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FR729_23560 PF02770 Acyl-CoA dehydrogenase, middle domain FR729_23560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FR729_23565 PF00171 Aldehyde dehydrogenase family FR729_23570 PF00108 Thiolase, N-terminal domain FR729_23570 PF02803 Thiolase, C-terminal domain FR729_23575 PF09278 MerR, DNA binding FR729_23575 PF00376 MerR family regulatory protein FR729_23580 PF02770 Acyl-CoA dehydrogenase, middle domain FR729_23580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FR729_23580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FR729_23585 PF01039 Carboxyl transferase domain FR729_23590 PF00378 Enoyl-CoA hydratase/isomerase FR729_23595 PF18140 Propionyl-coenzyme A carboxylase BT domain FR729_23595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FR729_23595 PF00364 Biotin-requiring enzyme FR729_23595 PF00289 Biotin carboxylase, N-terminal domain FR729_23595 PF02785 Biotin carboxylase C-terminal domain FR729_23600 PF00682 HMGL-like FR729_23610 PF00924 Mechanosensitive ion channel FR729_23610 PF12794 Mechanosensitive ion channel inner membrane domain 1 FR729_23610 PF12795 Mechanosensitive ion channel porin domain FR729_23620 PF12464 Maltose acetyltransferase FR729_23620 PF14602 Hexapeptide repeat of succinyl-transferase FR729_23625 PF00392 Bacterial regulatory proteins, gntR family FR729_23625 PF00155 Aminotransferase class I and II FR729_23630 PF01654 Cytochrome bd terminal oxidase subunit I FR729_23635 PF02322 Cytochrome bd terminal oxidase subunit II FR729_23650 PF13419 Haloacid dehalogenase-like hydrolase FR729_23655 PF03466 LysR substrate binding domain FR729_23655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_23660 PF03306 Alpha-acetolactate decarboxylase FR729_23665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FR729_23665 PF00205 Thiamine pyrophosphate enzyme, central domain FR729_23665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FR729_23670 PF00106 short chain dehydrogenase FR729_23675 PF05724 Thiopurine S-methyltransferase (TPMT) FR729_23680 PF00501 AMP-binding enzyme FR729_23680 PF14535 AMP-binding enzyme C-terminal domain FR729_23685 PF00005 ABC transporter FR729_23705 PF00501 AMP-binding enzyme FR729_23710 PF00005 ABC transporter FR729_23710 PF12399 Branched-chain amino acid ATP-binding cassette transporter FR729_23725 PF01012 Electron transfer flavoprotein domain FR729_23730 PF01012 Electron transfer flavoprotein domain FR729_23730 PF00766 Electron transfer flavoprotein FAD-binding domain FR729_23735 PF00501 AMP-binding enzyme FR729_23735 PF13193 AMP-binding enzyme C-terminal domain FR729_23740 PF00367 phosphotransferase system, EIIB FR729_23740 PF02378 Phosphotransferase system, EIIC FR729_23745 PF02056 Family 4 glycosyl hydrolase FR729_23745 PF11975 Family 4 glycosyl hydrolase C-terminal domain FR729_23750 PF07702 UTRA domain FR729_23750 PF00392 Bacterial regulatory proteins, gntR family FR729_23755 PF03334 Na+/H+ antiporter subunit FR729_23760 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) FR729_23775 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FR729_23780 PF00361 Proton-conducting membrane transporter FR729_23780 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter FR729_23780 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FR729_23780 PF13244 Domain of unknown function (DUF4040) FR729_23790 PF00582 Universal stress protein family FR729_23795 PF00106 short chain dehydrogenase FR729_23800 PF03466 LysR substrate binding domain FR729_23800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_23810 PF07690 Major Facilitator Superfamily FR729_23875 PF01037 Lrp/AsnC ligand binding domain FR729_23910 PF00069 Protein kinase domain FR729_23935 PF04717 Type VI secretion system, phage-baseplate injector FR729_23940 PF05638 Type VI secretion system effector, Hcp FR729_23945 PF17871 AAA lid domain FR729_23945 PF07724 AAA domain (Cdc48 subfamily) FR729_23945 PF10431 C-terminal, D2-small domain, of ClpB protein FR729_23945 PF00004 ATPase family associated with various cellular activities (AAA) FR729_23950 PF00158 Sigma-54 interaction domain FR729_23950 PF00072 Response regulator receiver domain FR729_23950 PF02954 Bacterial regulatory protein, Fis family FR729_23975 PF01551 Peptidase family M23 FR729_23980 PF00132 Bacterial transferase hexapeptide (six repeats) FR729_23985 PF00144 Beta-lactamase FR729_23990 PF00392 Bacterial regulatory proteins, gntR family FR729_24005 PF00551 Formyl transferase FR729_24005 PF01370 NAD dependent epimerase/dehydratase family FR729_24005 PF02911 Formyl transferase, C-terminal domain FR729_24025 PF08031 Berberine and berberine like FR729_24025 PF01565 FAD binding domain FR729_24035 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family FR729_24040 PF00478 IMP dehydrogenase / GMP reductase domain FR729_24045 PF03853 YjeF-related protein N-terminus FR729_24045 PF01256 Carbohydrate kinase FR729_24055 PF00072 Response regulator receiver domain FR729_24060 PF00248 Aldo/keto reductase family FR729_24075 PF00654 Voltage gated chloride channel FR729_24085 PF01227 GTP cyclohydrolase I FR729_24090 PF03453 MoeA N-terminal region (domain I and II) FR729_24090 PF03454 MoeA C-terminal region (domain IV) FR729_24090 PF00994 Probable molybdopterin binding domain FR729_24095 PF00899 ThiF family FR729_24115 PF00581 Rhodanese-like domain FR729_24135 PF00923 Transaldolase/Fructose-6-phosphate aldolase FR729_24140 PF00456 Transketolase, thiamine diphosphate binding domain FR729_24140 PF02780 Transketolase, C-terminal domain FR729_24140 PF02779 Transketolase, pyrimidine binding domain FR729_24145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_24145 PF08447 PAS fold FR729_24150 PF07690 Major Facilitator Superfamily FR729_24155 PF00793 DAHP synthetase I family FR729_24165 PF01389 OmpA-like transmembrane domain FR729_24165 PF00691 OmpA family FR729_24170 PF13419 Haloacid dehalogenase-like hydrolase FR729_24175 PF00472 RF-1 domain FR729_24180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FR729_24180 PF00672 HAMP domain FR729_24180 PF12729 Four helix bundle sensory module for signal transduction FR729_24185 PF00873 AcrB/AcrD/AcrF family FR729_24190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_24195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FR729_24200 PF07687 Peptidase dimerisation domain FR729_24200 PF01546 Peptidase family M20/M25/M40 FR729_24215 PF00072 Response regulator receiver domain FR729_24215 PF00196 Bacterial regulatory proteins, luxR family FR729_24220 PF00672 HAMP domain FR729_24220 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FR729_24220 PF07730 Histidine kinase FR729_24220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_24225 PF12838 4Fe-4S dicluster domain FR729_24225 PF13187 4Fe-4S dicluster domain FR729_24235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FR729_24235 PF01568 Molydopterin dinucleotide binding domain FR729_24235 PF00384 Molybdopterin oxidoreductase FR729_24240 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) FR729_24245 PF03264 NapC/NirT cytochrome c family, N-terminal region FR729_24255 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus FR729_24265 PF02803 Thiolase, C-terminal domain FR729_24265 PF00108 Thiolase, N-terminal domain FR729_24270 PF00106 short chain dehydrogenase FR729_24275 PF01810 LysE type translocator FR729_24285 PF07549 SecD/SecF GG Motif FR729_24285 PF02355 Protein export membrane protein FR729_24290 PF02355 Protein export membrane protein FR729_24290 PF07549 SecD/SecF GG Motif FR729_24290 PF13721 SecD export protein N-terminal TM region FR729_24320 PF01037 Lrp/AsnC ligand binding domain FR729_24340 PF13533 Biotin-lipoyl like FR729_24345 PF01047 MarR family FR729_24350 PF00072 Response regulator receiver domain FR729_24350 PF00512 His Kinase A (phospho-acceptor) domain FR729_24350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_24350 PF09308 LuxQ, periplasmic FR729_24355 PF13407 Periplasmic binding protein domain FR729_24365 PF01541 GIY-YIG catalytic domain FR729_24370 PF04337 Protein of unknown function, DUF480 FR729_24380 PF04363 Protein of unknown function (DUF496) FR729_24385 PF01554 MatE FR729_24390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_24390 PF01627 Hpt domain FR729_24390 PF00672 HAMP domain FR729_24390 PF00072 Response regulator receiver domain FR729_24390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FR729_24390 PF00512 His Kinase A (phospho-acceptor) domain FR729_24395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FR729_24395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FR729_24415 PF03466 LysR substrate binding domain FR729_24415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_24430 PF13520 Amino acid permease FR729_24435 PF00155 Aminotransferase class I and II FR729_24435 PF00392 Bacterial regulatory proteins, gntR family FR729_24445 PF16527 Two-component sensor protein CpxA, periplasmic domain FR729_24445 PF00672 HAMP domain FR729_24445 PF00512 His Kinase A (phospho-acceptor) domain FR729_24445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_24450 PF00072 Response regulator receiver domain FR729_24450 PF00486 Transcriptional regulatory protein, C terminal FR729_24465 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FR729_24465 PF12833 Helix-turn-helix domain FR729_24475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FR729_24475 PF00529 HlyD membrane-fusion protein of T1SS FR729_24480 PF03109 ABC1 family FR729_24485 PF01769 Divalent cation transporter FR729_24485 PF00571 CBS domain FR729_24485 PF03448 MgtE intracellular N domain FR729_24490 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FR729_24495 PF07969 Amidohydrolase family FR729_24500 PF01966 HD domain FR729_24515 PF07690 Major Facilitator Superfamily FR729_24525 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FR729_24530 PF00255 Glutathione peroxidase FR729_24545 PF01323 DSBA-like thioredoxin domain FR729_24560 PF00486 Transcriptional regulatory protein, C terminal FR729_24560 PF00072 Response regulator receiver domain FR729_24565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FR729_24565 PF16527 Two-component sensor protein CpxA, periplasmic domain FR729_24565 PF00512 His Kinase A (phospho-acceptor) domain FR729_24565 PF00672 HAMP domain FR729_24575 PF01219 Prokaryotic diacylglycerol kinase FR729_24580 PF00884 Sulfatase FR729_24580 PF08019 Phosphoethanolamine transferase EptA/EptB FR729_24585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FR729_24600 PF01734 Patatin-like phospholipase FR729_24605 PF02678 Pirin FR729_24605 PF05726 Pirin C-terminal cupin domain FR729_24610 PF00313 'Cold-shock' DNA-binding domain FR729_24625 PF00962 Adenosine/AMP deaminase FR729_24630 PF00462 Glutaredoxin FR729_24630 PF08534 Redoxin FR729_24640 PF07943 Penicillin-binding protein 5, C-terminal domain FR729_24640 PF00768 D-alanyl-D-alanine carboxypeptidase FR729_24650 PF02798 Glutathione S-transferase, N-terminal domain FR729_24660 PF08244 Glycosyl hydrolases family 32 C terminal FR729_24660 PF00251 Glycosyl hydrolases family 32 N-terminal domain FR729_24665 PF00294 pfkB family carbohydrate kinase FR729_24675 PF00356 Bacterial regulatory proteins, lacI family FR729_24680 PF11471 Maltoporin periplasmic N-terminal extension FR729_24680 PF02264 LamB porin FR729_24725 PF03466 LysR substrate binding domain FR729_24725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_24730 PF01497 Periplasmic binding protein FR729_24730 PF12833 Helix-turn-helix domain FR729_24735 PF00155 Aminotransferase class I and II FR729_24765 PF00271 Helicase conserved C-terminal domain FR729_24765 PF00270 DEAD/DEAH box helicase FR729_24775 PF03466 LysR substrate binding domain FR729_24775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FR729_24780 PF03466 LysR substrate binding domain FR729_24780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family