locus-tag class description AL541_00005 PF13302 Acetyltransferase (GNAT) domain AL541_00015 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_00020 PF00873 AcrB/AcrD/AcrF family AL541_00025 PF13533 Biotin-lipoyl like AL541_00035 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL541_00035 PF00326 Prolyl oligopeptidase family AL541_00040 PF12848 ABC transporter AL541_00040 PF16326 ABC transporter C-terminal domain AL541_00040 PF00005 ABC transporter AL541_00045 PF00582 Universal stress protein family AL541_00050 PF02525 Flavodoxin-like fold AL541_00055 PF02254 TrkA-N domain AL541_00055 PF00999 Sodium/hydrogen exchanger family AL541_00070 PF00128 Alpha amylase, catalytic domain AL541_00075 PF13411 MerR HTH family regulatory protein AL541_00080 PF02627 Carboxymuconolactone decarboxylase family AL541_00090 PF04151 Bacterial pre-peptidase C-terminal domain AL541_00090 PF08453 Peptidase family M9 N-terminal AL541_00090 PF01752 Collagenase AL541_00100 PF17848 Acetyl-coA carboxylase zinc finger domain AL541_00100 PF01039 Carboxyl transferase domain AL541_00105 PF03466 LysR substrate binding domain AL541_00105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_00110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_00110 PF00672 HAMP domain AL541_00110 PF02743 Cache domain AL541_00120 PF03824 High-affinity nickel-transport protein AL541_00125 PF02583 Metal-sensitive transcriptional repressor AL541_00130 PF02447 GntP family permease AL541_00135 PF01370 NAD dependent epimerase/dehydratase family AL541_00140 PF01261 Xylose isomerase-like TIM barrel AL541_00145 PF00596 Class II Aldolase and Adducin N-terminal domain AL541_00150 PF07005 Sugar-binding N-terminal domain AL541_00150 PF17042 Nucleotide-binding C-terminal domain AL541_00155 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL541_00155 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_00160 PF08220 DeoR-like helix-turn-helix domain AL541_00160 PF00455 DeoR C terminal sensor domain AL541_00165 PF00528 Binding-protein-dependent transport system inner membrane component AL541_00170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_00175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_00175 PF00005 ABC transporter AL541_00180 PF00005 ABC transporter AL541_00180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_00185 PF01554 MatE AL541_00195 PF00072 Response regulator receiver domain AL541_00195 PF01584 CheW-like domain AL541_00205 PF01243 Pyridoxamine 5'-phosphate oxidase AL541_00210 PF06228 Haem utilisation ChuX/HutX AL541_00215 PF04055 Radical SAM superfamily AL541_00220 PF03544 Gram-negative bacterial TonB protein C-terminal AL541_00225 PF01618 MotA/TolQ/ExbB proton channel family AL541_00230 PF02472 Biopolymer transport protein ExbD/TolR AL541_00240 PF01032 FecCD transport family AL541_00245 PF00005 ABC transporter AL541_00285 PF01467 Cytidylyltransferase-like AL541_00290 PF02540 NAD synthase AL541_00295 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_00295 PF03476 MOSC N-terminal beta barrel domain AL541_00295 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_00295 PF03473 MOSC domain AL541_00295 PF03476 MOSC N-terminal beta barrel domain AL541_00295 PF03473 MOSC domain AL541_00300 PF01679 Proteolipid membrane potential modulator AL541_00310 PF01979 Amidohydrolase family AL541_00315 PF05661 Protein of unknown function (DUF808) AL541_00325 PF01032 FecCD transport family AL541_00330 PF01032 FecCD transport family AL541_00335 PF01497 Periplasmic binding protein AL541_00340 PF00593 TonB dependent receptor AL541_00340 PF07715 TonB-dependent Receptor Plug Domain AL541_00345 PF00005 ABC transporter AL541_00345 PF00664 ABC transporter transmembrane region AL541_00350 PF00664 ABC transporter transmembrane region AL541_00350 PF00005 ABC transporter AL541_00375 PF00528 Binding-protein-dependent transport system inner membrane component AL541_00380 PF00528 Binding-protein-dependent transport system inner membrane component AL541_00380 PF14785 Maltose transport system permease protein MalF P2 domain AL541_00385 PF01547 Bacterial extracellular solute-binding protein AL541_00390 PF08402 TOBE domain AL541_00390 PF00005 ABC transporter AL541_00395 PF02397 Bacterial sugar transferase AL541_00410 PF02706 Chain length determinant protein AL541_00410 PF13807 G-rich domain on putative tyrosine kinase AL541_00410 PF13614 AAA domain AL541_00420 PF00534 Glycosyl transferases group 1 AL541_00420 PF13439 Glycosyltransferase Family 4 AL541_00455 PF00440 Bacterial regulatory proteins, tetR family AL541_00455 PF16925 Tetracyclin repressor-like, C-terminal domain AL541_00460 PF16884 N-terminal domain of oxidoreductase AL541_00460 PF00107 Zinc-binding dehydrogenase AL541_00465 PF13417 Glutathione S-transferase, N-terminal domain AL541_00470 PF06628 Catalase-related immune-responsive AL541_00470 PF00199 Catalase AL541_00475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_00475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL541_00485 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_00485 PF18113 Rubredoxin binding C-terminal domain AL541_00490 PF00258 Flavodoxin AL541_00490 PF00753 Metallo-beta-lactamase superfamily AL541_00490 PF00301 Rubredoxin AL541_00495 PF00158 Sigma-54 interaction domain AL541_00495 PF01590 GAF domain AL541_00505 PF13419 Haloacid dehalogenase-like hydrolase AL541_00510 PF00127 Copper binding proteins, plastocyanin/azurin family AL541_00520 PF01266 FAD dependent oxidoreductase AL541_00525 PF18113 Rubredoxin binding C-terminal domain AL541_00525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_00535 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL541_00535 PF00355 Rieske [2Fe-2S] domain AL541_00540 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_00545 PF03466 LysR substrate binding domain AL541_00545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_00550 PF02386 Cation transport protein AL541_00555 PF02080 TrkA-C domain AL541_00555 PF02254 TrkA-N domain AL541_00560 PF00486 Transcriptional regulatory protein, C terminal AL541_00560 PF00072 Response regulator receiver domain AL541_00565 PF00512 His Kinase A (phospho-acceptor) domain AL541_00565 PF00989 PAS fold AL541_00565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_00565 PF16736 Single Cache-like AL541_00570 PF00005 ABC transporter AL541_00570 PF00664 ABC transporter transmembrane region AL541_00575 PF07715 TonB-dependent Receptor Plug Domain AL541_00575 PF00593 TonB dependent receptor AL541_00580 PF00005 ABC transporter AL541_00585 PF01497 Periplasmic binding protein AL541_00590 PF01032 FecCD transport family AL541_00600 PF00529 HlyD membrane-fusion protein of T1SS AL541_00605 PF00005 ABC transporter AL541_00605 PF00664 ABC transporter transmembrane region AL541_00615 PF00196 Bacterial regulatory proteins, luxR family AL541_00620 PF00196 Bacterial regulatory proteins, luxR family AL541_00630 PF02743 Cache domain AL541_00630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_00630 PF00672 HAMP domain AL541_00635 PF17863 AAA lid domain AL541_00635 PF07726 ATPase family associated with various cellular activities (AAA) AL541_00640 PF01882 Protein of unknown function DUF58 AL541_00650 PF13519 von Willebrand factor type A domain AL541_00655 PF07584 Aerotolerance regulator N-terminal AL541_00655 PF13519 von Willebrand factor type A domain AL541_00670 PF00005 ABC transporter AL541_00675 PF00528 Binding-protein-dependent transport system inner membrane component AL541_00680 PF00528 Binding-protein-dependent transport system inner membrane component AL541_00685 PF12849 PBP superfamily domain AL541_00690 PF00672 HAMP domain AL541_00690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_00710 PF00593 TonB dependent receptor AL541_00710 PF07715 TonB-dependent Receptor Plug Domain AL541_00715 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL541_00715 PF00326 Prolyl oligopeptidase family AL541_00720 PF00270 DEAD/DEAH box helicase AL541_00720 PF00271 Helicase conserved C-terminal domain AL541_00730 PF17969 L,D-transpeptidase C-terminal domain AL541_00730 PF01476 LysM domain AL541_00730 PF03734 L,D-transpeptidase catalytic domain AL541_00735 PF03441 FAD binding domain of DNA photolyase AL541_00735 PF00875 DNA photolyase AL541_00740 PF13411 MerR HTH family regulatory protein AL541_00745 PF08349 Protein of unknown function (DUF1722) AL541_00750 PF01048 Phosphorylase superfamily AL541_00765 PF00990 Diguanylate cyclase, GGDEF domain AL541_00770 PF11742 Protein of unknown function (DUF3302) AL541_00775 PF00529 HlyD membrane-fusion protein of T1SS AL541_00775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_00780 PF07155 ECF-type riboflavin transporter, S component AL541_00785 PF12558 ATP-binding cassette cobalt transporter AL541_00785 PF00005 ABC transporter AL541_00805 PF12801 4Fe-4S binding domain AL541_00805 PF13237 4Fe-4S dicluster domain AL541_00810 PF12800 4Fe-4S binding domain AL541_00810 PF12838 4Fe-4S dicluster domain AL541_00815 PF00583 Acetyltransferase (GNAT) family AL541_00830 PF07238 PilZ domain AL541_00830 PF12945 Flagellar protein YcgR AL541_00835 PF13609 Gram-negative porin AL541_00840 PF00672 HAMP domain AL541_00840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_00840 PF17200 Single Cache domain 2 AL541_00845 PF13654 AAA domain AL541_00845 PF05362 Lon protease (S16) C-terminal proteolytic domain AL541_00855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_00855 PF00005 ABC transporter AL541_00860 PF00326 Prolyl oligopeptidase family AL541_00860 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL541_00865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_00865 PF03466 LysR substrate binding domain AL541_00870 PF02652 L-lactate permease AL541_00875 PF01070 FMN-dependent dehydrogenase AL541_00885 PF00924 Mechanosensitive ion channel AL541_00890 PF00194 Eukaryotic-type carbonic anhydrase AL541_00920 PF00107 Zinc-binding dehydrogenase AL541_00920 PF08240 Alcohol dehydrogenase GroES-like domain AL541_00925 PF00155 Aminotransferase class I and II AL541_00930 PF00563 EAL domain AL541_00930 PF13188 PAS domain AL541_00930 PF00990 Diguanylate cyclase, GGDEF domain AL541_00930 PF03707 Bacterial signalling protein N terminal repeat AL541_00945 PF00080 Copper/zinc superoxide dismutase (SODC) AL541_00950 PF08448 PAS fold AL541_00950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_00950 PF13426 PAS domain AL541_00950 PF00072 Response regulator receiver domain AL541_00950 PF00512 His Kinase A (phospho-acceptor) domain AL541_00955 PF00486 Transcriptional regulatory protein, C terminal AL541_00955 PF00072 Response regulator receiver domain AL541_00975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_00975 PF03466 LysR substrate binding domain AL541_00980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_01015 PF03466 LysR substrate binding domain AL541_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_01030 PF18269 T3SS EscN ATPase C-terminal domain AL541_01030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_01040 PF14841 FliG middle domain AL541_01040 PF14842 FliG N-terminal domain AL541_01040 PF01706 FliG C-terminal domain AL541_01045 PF08345 Flagellar M-ring protein C-terminal AL541_01045 PF01514 Secretory protein of YscJ/FliF family AL541_01050 PF02049 Flagellar hook-basal body complex protein FliE AL541_01055 PF00158 Sigma-54 interaction domain AL541_01055 PF00072 Response regulator receiver domain AL541_01055 PF02954 Bacterial regulatory protein, Fis family AL541_01070 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL541_01075 PF00813 FliP family AL541_01080 PF01313 Bacterial export proteins, family 3 AL541_01085 PF01311 Bacterial export proteins, family 1 AL541_01090 PF01312 FlhB HrpN YscU SpaS Family AL541_01095 PF00771 FHIPEP family AL541_01105 PF00700 Bacterial flagellin C-terminal helical region AL541_01105 PF00669 Bacterial flagellin N-terminal helical region AL541_01115 PF02465 Flagellar hook-associated protein 2 N-terminus AL541_01115 PF07196 Flagellin hook IN motif AL541_01115 PF07195 Flagellar hook-associated protein 2 C-terminus AL541_01120 PF02561 Flagellar protein FliS AL541_01135 PF03748 Flagellar basal body-associated protein FliL AL541_01140 PF04545 Sigma-70, region 4 AL541_01140 PF04542 Sigma-70 region 2 AL541_01145 PF01618 MotA/TolQ/ExbB proton channel family AL541_01150 PF00691 OmpA family AL541_01150 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL541_01165 PF08000 Bacterial PH domain AL541_01190 PF04055 Radical SAM superfamily AL541_01195 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL541_01215 PF00672 HAMP domain AL541_01215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_01215 PF00512 His Kinase A (phospho-acceptor) domain AL541_01220 PF00486 Transcriptional regulatory protein, C terminal AL541_01220 PF00072 Response regulator receiver domain AL541_01245 PF07690 Major Facilitator Superfamily AL541_01250 PF03466 LysR substrate binding domain AL541_01250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_01255 PF00892 EamA-like transporter family AL541_01280 PF13533 Biotin-lipoyl like AL541_01290 PF01594 AI-2E family transporter AL541_01295 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL541_01305 PF00175 Oxidoreductase NAD-binding domain AL541_01305 PF00970 Oxidoreductase FAD-binding domain AL541_01315 PF09905 DNA-binding protein VF530 AL541_01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_01320 PF03466 LysR substrate binding domain AL541_01330 PF00881 Nitroreductase family AL541_01335 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL541_01335 PF12833 Helix-turn-helix domain AL541_01340 PF00686 Starch binding domain AL541_01340 PF00128 Alpha amylase, catalytic domain AL541_01345 PF00768 D-alanyl-D-alanine carboxypeptidase AL541_01345 PF07943 Penicillin-binding protein 5, C-terminal domain AL541_01350 PF00561 alpha/beta hydrolase fold AL541_01365 PF03441 FAD binding domain of DNA photolyase AL541_01365 PF00875 DNA photolyase AL541_01370 PF02469 Fasciclin domain AL541_01375 PF18416 N-acetylglucosamine binding protein domain 2 AL541_01375 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL541_01380 PF01734 Patatin-like phospholipase AL541_01385 PF01914 MarC family integral membrane protein AL541_01390 PF00881 Nitroreductase family AL541_01395 PF02563 Polysaccharide biosynthesis/export protein AL541_01395 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL541_01395 PF10531 SLBB domain AL541_01400 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL541_01405 PF13807 G-rich domain on putative tyrosine kinase AL541_01405 PF02706 Chain length determinant protein AL541_01405 PF13614 AAA domain AL541_01415 PF08803 Putative mono-oxygenase ydhR AL541_01420 PF03466 LysR substrate binding domain AL541_01420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_01430 PF00375 Sodium:dicarboxylate symporter family AL541_01445 PF06803 Protein of unknown function (DUF1232) AL541_01450 PF07687 Peptidase dimerisation domain AL541_01450 PF01546 Peptidase family M20/M25/M40 AL541_01455 PF07670 Nucleoside recognition AL541_01460 PF07670 Nucleoside recognition AL541_01475 PF00128 Alpha amylase, catalytic domain AL541_01480 PF00912 Transglycosylase AL541_01485 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL541_01485 PF02806 Alpha amylase, C-terminal all-beta domain AL541_01485 PF00128 Alpha amylase, catalytic domain AL541_01490 PF02446 4-alpha-glucanotransferase AL541_01495 PF00343 Carbohydrate phosphorylase AL541_01500 PF17874 MalT-like TPR region AL541_01500 PF00196 Bacterial regulatory proteins, luxR family AL541_01515 PF02630 SCO1/SenC AL541_01520 PF00367 phosphotransferase system, EIIB AL541_01520 PF02378 Phosphotransferase system, EIIC AL541_01525 PF03193 RsgA GTPase AL541_01530 PF00375 Sodium:dicarboxylate symporter family AL541_01535 PF08543 Phosphomethylpyrimidine kinase AL541_01550 PF17967 Pullulanase N2 domain AL541_01550 PF11852 Domain of unknown function (DUF3372) AL541_01550 PF18494 Pullulanase Ins domain AL541_01550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL541_01550 PF03714 Bacterial pullanase-associated domain AL541_01555 PF04231 Endonuclease I AL541_01560 PF16657 Maltogenic Amylase, C-terminal domain AL541_01560 PF02903 Alpha amylase, N-terminal ig-like domain AL541_01560 PF00128 Alpha amylase, catalytic domain AL541_01575 PF02264 LamB porin AL541_01580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL541_01580 PF00128 Alpha amylase, catalytic domain AL541_01585 PF03315 Serine dehydratase beta chain AL541_01585 PF03313 Serine dehydratase alpha chain AL541_01590 PF00474 Sodium:solute symporter family AL541_01595 PF07690 Major Facilitator Superfamily AL541_01610 PF12697 Alpha/beta hydrolase family AL541_01630 PF03328 HpcH/HpaI aldolase/citrate lyase family AL541_01635 PF00356 Bacterial regulatory proteins, lacI family AL541_01640 PF03480 Bacterial extracellular solute-binding protein, family 7 AL541_01650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL541_01665 PF00474 Sodium:solute symporter family AL541_01670 PF00356 Bacterial regulatory proteins, lacI family AL541_01675 PF00239 Resolvase, N terminal domain AL541_01675 PF02796 Helix-turn-helix domain of resolvase AL541_01680 PF07690 Major Facilitator Superfamily AL541_01695 PF04225 Opacity-associated protein A LysM-like domain AL541_01695 PF01551 Peptidase family M23 AL541_01705 PF00675 Insulinase (Peptidase family M16) AL541_01705 PF05193 Peptidase M16 inactive domain AL541_01710 PF00672 HAMP domain AL541_01710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_01710 PF17200 Single Cache domain 2 AL541_01715 PF00005 ABC transporter AL541_01720 PF01032 FecCD transport family AL541_01725 PF01032 FecCD transport family AL541_01730 PF01497 Periplasmic binding protein AL541_01735 PF00593 TonB dependent receptor AL541_01735 PF07715 TonB-dependent Receptor Plug Domain AL541_01735 PF07660 Secretin and TonB N terminus short domain AL541_01740 PF07715 TonB-dependent Receptor Plug Domain AL541_01740 PF00593 TonB dependent receptor AL541_01745 PF02655 ATP-grasp domain AL541_01745 PF00206 Lyase AL541_01750 PF04183 IucA / IucC family AL541_01750 PF06276 Ferric iron reductase FhuF-like transporter AL541_01760 PF06276 Ferric iron reductase FhuF-like transporter AL541_01760 PF04183 IucA / IucC family AL541_01765 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL541_01765 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL541_01770 PF01547 Bacterial extracellular solute-binding protein AL541_01775 PF00512 His Kinase A (phospho-acceptor) domain AL541_01775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_01775 PF08521 Two-component sensor kinase N-terminal AL541_01780 PF00486 Transcriptional regulatory protein, C terminal AL541_01780 PF00072 Response regulator receiver domain AL541_01790 PF00367 phosphotransferase system, EIIB AL541_01790 PF02378 Phosphotransferase system, EIIC AL541_01810 PF00005 ABC transporter AL541_01860 PF02566 OsmC-like protein AL541_01865 PF01047 MarR family AL541_01870 PF00578 AhpC/TSA family AL541_01870 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL541_01875 PF13192 Thioredoxin domain AL541_01875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_01890 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AL541_01905 PF03466 LysR substrate binding domain AL541_01905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_01915 PF01965 DJ-1/PfpI family AL541_01915 PF12833 Helix-turn-helix domain AL541_01920 PF04542 Sigma-70 region 2 AL541_01920 PF08281 Sigma-70, region 4 AL541_01940 PF03473 MOSC domain AL541_01940 PF03475 3-alpha domain AL541_01945 PF00271 Helicase conserved C-terminal domain AL541_01945 PF00270 DEAD/DEAH box helicase AL541_01955 PF00664 ABC transporter transmembrane region AL541_01955 PF00005 ABC transporter AL541_01965 PF01037 Lrp/AsnC ligand binding domain AL541_01995 PF00474 Sodium:solute symporter family AL541_02005 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL541_02005 PF00171 Aldehyde dehydrogenase family AL541_02005 PF01619 Proline dehydrogenase AL541_02005 PF14850 DNA-binding domain of Proline dehydrogenase AL541_02010 PF12833 Helix-turn-helix domain AL541_02020 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL541_02020 PF01243 Pyridoxamine 5'-phosphate oxidase AL541_02025 PF00512 His Kinase A (phospho-acceptor) domain AL541_02025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_02025 PF02743 Cache domain AL541_02030 PF00158 Sigma-54 interaction domain AL541_02030 PF00072 Response regulator receiver domain AL541_02030 PF02954 Bacterial regulatory protein, Fis family AL541_02035 PF00529 HlyD membrane-fusion protein of T1SS AL541_02050 PF00664 ABC transporter transmembrane region AL541_02050 PF03412 Peptidase C39 family AL541_02050 PF00005 ABC transporter AL541_02060 PF03358 NADPH-dependent FMN reductase AL541_02065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_02070 PF00246 Zinc carboxypeptidase AL541_02075 PF01418 Helix-turn-helix domain, rpiR family AL541_02075 PF01380 SIS domain AL541_02085 PF01380 SIS domain AL541_02090 PF00367 phosphotransferase system, EIIB AL541_02090 PF02378 Phosphotransferase system, EIIC AL541_02095 PF00267 Gram-negative porin AL541_02100 PF03575 Peptidase family S51 AL541_02105 PF03466 LysR substrate binding domain AL541_02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_02110 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_02120 PF13718 GNAT acetyltransferase 2 AL541_02120 PF05127 Helicase AL541_02125 PF08775 ParB family AL541_02125 PF02195 ParB-like nuclease domain AL541_02130 PF18607 ParA helix turn helix domain AL541_02130 PF13614 AAA domain AL541_02145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_02145 PF00005 ABC transporter AL541_02150 PF00005 ABC transporter AL541_02150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_02160 PF00925 GTP cyclohydrolase II AL541_02160 PF08719 Domain of unknown function (DUF1768) AL541_02170 PF00512 His Kinase A (phospho-acceptor) domain AL541_02170 PF01627 Hpt domain AL541_02170 PF00072 Response regulator receiver domain AL541_02170 PF17149 Periplasmic sensor domain found in signal transduction proteins AL541_02170 PF00672 HAMP domain AL541_02170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_02180 PF01709 Transcriptional regulator AL541_02185 PF01098 Cell cycle protein AL541_02195 PF00005 ABC transporter AL541_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_02215 PF06580 Histidine kinase AL541_02215 PF07694 5TMR of 5TMR-LYT AL541_02215 PF13492 GAF domain AL541_02220 PF04397 LytTr DNA-binding domain AL541_02220 PF00072 Response regulator receiver domain AL541_02225 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL541_02230 PF17200 Single Cache domain 2 AL541_02230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_02230 PF00672 HAMP domain AL541_02250 PF03616 Sodium/glutamate symporter AL541_02260 PF00005 ABC transporter AL541_02265 PF00392 Bacterial regulatory proteins, gntR family AL541_02265 PF00155 Aminotransferase class I and II AL541_02270 PF03616 Sodium/glutamate symporter AL541_02280 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL541_02295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_02295 PF03466 LysR substrate binding domain AL541_02300 PF02678 Pirin AL541_02300 PF17954 Quercetinase C-terminal cupin domain AL541_02305 PF07681 DoxX AL541_02315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL541_02315 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL541_02315 PF02805 Metal binding domain of Ada AL541_02315 PF12833 Helix-turn-helix domain AL541_02320 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL541_02320 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL541_02330 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL541_02340 PF03600 Citrate transporter AL541_02355 PF12697 Alpha/beta hydrolase family AL541_02360 PF00704 Glycosyl hydrolases family 18 AL541_02360 PF08329 Chitinase A, N-terminal domain AL541_02370 PF06865 Pyrimidine/purine nucleoside phosphorylase AL541_02380 PF00990 Diguanylate cyclase, GGDEF domain AL541_02380 PF00563 EAL domain AL541_02385 PF01554 MatE AL541_02390 PF00849 RNA pseudouridylate synthase AL541_02405 PF03466 LysR substrate binding domain AL541_02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_02420 PF17152 Periplasmic sensor domain AL541_02420 PF00990 Diguanylate cyclase, GGDEF domain AL541_02430 PF00756 Putative esterase AL541_02435 PF08240 Alcohol dehydrogenase GroES-like domain AL541_02435 PF00107 Zinc-binding dehydrogenase AL541_02440 PF00797 N-acetyltransferase AL541_02445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_02445 PF03466 LysR substrate binding domain AL541_02450 PF04954 Siderophore-interacting protein AL541_02450 PF08021 Siderophore-interacting FAD-binding domain AL541_02455 PF01810 LysE type translocator AL541_02460 PF01037 Lrp/AsnC ligand binding domain AL541_02480 PF13599 Pentapeptide repeats (9 copies) AL541_02485 PF03922 OmpW family AL541_02490 PF13533 Biotin-lipoyl like AL541_02495 PF07690 Major Facilitator Superfamily AL541_02505 PF12706 Beta-lactamase superfamily domain AL541_02510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_02545 PF13556 PucR C-terminal helix-turn-helix domain AL541_02545 PF05651 Putative sugar diacid recognition AL541_02545 PF17853 GGDEF-like domain AL541_02550 PF02447 GntP family permease AL541_02555 PF02595 Glycerate kinase family AL541_02560 PF00392 Bacterial regulatory proteins, gntR family AL541_02560 PF00155 Aminotransferase class I and II AL541_02580 PF00583 Acetyltransferase (GNAT) family AL541_02600 PF13302 Acetyltransferase (GNAT) domain AL541_02605 PF03264 NapC/NirT cytochrome c family, N-terminal region AL541_02610 PF18364 Molybdopterin oxidoreductase N-terminal domain AL541_02610 PF01568 Molydopterin dinucleotide binding domain AL541_02610 PF00384 Molybdopterin oxidoreductase AL541_02620 PF02581 Thiamine monophosphate synthase AL541_02625 PF02110 Hydroxyethylthiazole kinase family AL541_02630 PF03070 TENA/THI-4/PQQC family AL541_02635 PF09084 NMT1/THI5 like AL541_02640 PF00528 Binding-protein-dependent transport system inner membrane component AL541_02645 PF00005 ABC transporter AL541_02650 PF08543 Phosphomethylpyrimidine kinase AL541_02655 PF01523 Putative modulator of DNA gyrase AL541_02660 PF01523 Putative modulator of DNA gyrase AL541_02665 PF04013 Putative SAM-dependent RNA methyltransferase AL541_02720 PF10928 Protein of unknown function (DUF2810) AL541_02725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL541_02725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_02735 PF03009 Glycerophosphoryl diester phosphodiesterase family AL541_02740 PF00072 Response regulator receiver domain AL541_02740 PF00486 Transcriptional regulatory protein, C terminal AL541_02745 PF00672 HAMP domain AL541_02745 PF16750 Sensor domain of 2-component histidine kinase AL541_02745 PF00512 His Kinase A (phospho-acceptor) domain AL541_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_02750 PF07715 TonB-dependent Receptor Plug Domain AL541_02750 PF00593 TonB dependent receptor AL541_02760 PF01618 MotA/TolQ/ExbB proton channel family AL541_02765 PF01618 MotA/TolQ/ExbB proton channel family AL541_02770 PF02472 Biopolymer transport protein ExbD/TolR AL541_02820 PF01297 Zinc-uptake complex component A periplasmic AL541_02825 PF00005 ABC transporter AL541_02830 PF00950 ABC 3 transport family AL541_02845 PF00326 Prolyl oligopeptidase family AL541_02845 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL541_02850 PF07690 Major Facilitator Superfamily AL541_02855 PF00491 Arginase family AL541_02860 PF17810 Arginine decarboxylase helical bundle domain AL541_02860 PF17944 Arginine decarboxylase C-terminal helical extension AL541_02860 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL541_02865 PF00753 Metallo-beta-lactamase superfamily AL541_02870 PF18030 RimK PreATP-grasp domain AL541_02870 PF08443 RimK-like ATP-grasp domain AL541_02875 PF18030 RimK PreATP-grasp domain AL541_02875 PF08443 RimK-like ATP-grasp domain AL541_02890 PF12706 Beta-lactamase superfamily domain AL541_02900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_02900 PF03466 LysR substrate binding domain AL541_02915 PF00232 Glycosyl hydrolase family 1 AL541_02920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_02920 PF00512 His Kinase A (phospho-acceptor) domain AL541_02925 PF02954 Bacterial regulatory protein, Fis family AL541_02925 PF00072 Response regulator receiver domain AL541_02925 PF00158 Sigma-54 interaction domain AL541_02930 PF00990 Diguanylate cyclase, GGDEF domain AL541_02935 PF05525 Branched-chain amino acid transport protein AL541_02955 PF01266 FAD dependent oxidoreductase AL541_02960 PF00182 Chitinase class I AL541_02980 PF02322 Cytochrome bd terminal oxidase subunit II AL541_02985 PF01654 Cytochrome bd terminal oxidase subunit I AL541_02990 PF03116 NQR2, RnfD, RnfE family AL541_02995 PF01212 Beta-eliminating lyase AL541_03015 PF07670 Nucleoside recognition AL541_03015 PF07662 Na+ dependent nucleoside transporter C-terminus AL541_03015 PF01773 Na+ dependent nucleoside transporter N-terminus AL541_03030 PF05230 MASE2 domain AL541_03030 PF00990 Diguanylate cyclase, GGDEF domain AL541_03045 PF00990 Diguanylate cyclase, GGDEF domain AL541_03050 PF03441 FAD binding domain of DNA photolyase AL541_03050 PF00875 DNA photolyase AL541_03055 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL541_03070 PF01625 Peptide methionine sulfoxide reductase AL541_03070 PF01641 SelR domain AL541_03075 PF02566 OsmC-like protein AL541_03080 PF12464 Maltose acetyltransferase AL541_03080 PF14602 Hexapeptide repeat of succinyl-transferase AL541_03115 PF03466 LysR substrate binding domain AL541_03115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03120 PF13419 Haloacid dehalogenase-like hydrolase AL541_03135 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL541_03140 PF00194 Eukaryotic-type carbonic anhydrase AL541_03145 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_03155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_03160 PF12704 MacB-like periplasmic core domain AL541_03160 PF02687 FtsX-like permease family AL541_03160 PF00005 ABC transporter AL541_03165 PF02321 Outer membrane efflux protein AL541_03175 PF00440 Bacterial regulatory proteins, tetR family AL541_03180 PF00657 GDSL-like Lipase/Acylhydrolase AL541_03195 PF03611 PTS system sugar-specific permease component AL541_03205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_03210 PF00356 Bacterial regulatory proteins, lacI family AL541_03215 PF13419 Haloacid dehalogenase-like hydrolase AL541_03225 PF00266 Aminotransferase class-V AL541_03235 PF00005 ABC transporter AL541_03240 PF00528 Binding-protein-dependent transport system inner membrane component AL541_03245 PF00392 Bacterial regulatory proteins, gntR family AL541_03245 PF07702 UTRA domain AL541_03260 PF04393 Protein of unknown function (DUF535) AL541_03270 PF01266 FAD dependent oxidoreductase AL541_03275 PF00246 Zinc carboxypeptidase AL541_03275 PF18027 Cytosolic carboxypeptidase N-terminal domain AL541_03280 PF00691 OmpA family AL541_03280 PF01389 OmpA-like transmembrane domain AL541_03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03285 PF03466 LysR substrate binding domain AL541_03290 PF03466 LysR substrate binding domain AL541_03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03300 PF03313 Serine dehydratase alpha chain AL541_03300 PF03315 Serine dehydratase beta chain AL541_03320 PF00133 tRNA synthetases class I (I, L, M and V) AL541_03320 PF08264 Anticodon-binding domain of tRNA AL541_03325 PF01464 Transglycosylase SLT domain AL541_03325 PF01476 LysM domain AL541_03345 PF00460 Flagella basal body rod protein AL541_03350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_03350 PF00460 Flagella basal body rod protein AL541_03355 PF03963 Flagellar hook capping protein - N-terminal region AL541_03355 PF13861 FlgD Tudor-like domain AL541_03355 PF13860 FlgD Ig-like domain AL541_03360 PF07559 Flagellar basal body protein FlaE AL541_03360 PF00460 Flagella basal body rod protein AL541_03360 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_03365 PF00460 Flagella basal body rod protein AL541_03365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_03370 PF00460 Flagella basal body rod protein AL541_03370 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_03375 PF02107 Flagellar L-ring protein AL541_03380 PF02119 Flagellar P-ring protein AL541_03385 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL541_03385 PF10135 Rod binding protein AL541_03390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_03390 PF00460 Flagella basal body rod protein AL541_03395 PF00669 Bacterial flagellin N-terminal helical region AL541_03415 PF01070 FMN-dependent dehydrogenase AL541_03430 PF00581 Rhodanese-like domain AL541_03435 PF00166 Chaperonin 10 Kd subunit AL541_03440 PF00118 TCP-1/cpn60 chaperonin family AL541_03450 PF01810 LysE type translocator AL541_03470 PF00440 Bacterial regulatory proteins, tetR family AL541_03470 PF08359 YsiA-like protein, C-terminal region AL541_03475 PF12833 Helix-turn-helix domain AL541_03480 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AL541_03485 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AL541_03490 PF13520 Amino acid permease AL541_03495 PF03060 Nitronate monooxygenase AL541_03500 PF01641 SelR domain AL541_03500 PF01625 Peptide methionine sulfoxide reductase AL541_03505 PF08220 DeoR-like helix-turn-helix domain AL541_03505 PF00455 DeoR C terminal sensor domain AL541_03520 PF00857 Isochorismatase family AL541_03530 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL541_03530 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL541_03555 PF03466 LysR substrate binding domain AL541_03555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03570 PF06629 MltA-interacting protein MipA AL541_03575 PF17185 NlpE C-terminal OB domain AL541_03575 PF04170 NlpE N-terminal domain AL541_03580 PF00571 CBS domain AL541_03580 PF00005 ABC transporter AL541_03585 PF00528 Binding-protein-dependent transport system inner membrane component AL541_03595 PF02001 Protein of unknown function DUF134 AL541_03620 PF03144 Elongation factor Tu domain 2 AL541_03620 PF00679 Elongation factor G C-terminus AL541_03620 PF14492 Elongation Factor G, domain II AL541_03620 PF03764 Elongation factor G, domain IV AL541_03620 PF00009 Elongation factor Tu GTP binding domain AL541_03630 PF13378 Enolase C-terminal domain-like AL541_03630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL541_03640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03640 PF03466 LysR substrate binding domain AL541_03655 PF00376 MerR family regulatory protein AL541_03655 PF09278 MerR, DNA binding AL541_03675 PF00398 Ribosomal RNA adenine dimethylase AL541_03680 PF13091 PLD-like domain AL541_03690 PF00873 AcrB/AcrD/AcrF family AL541_03710 PF00873 AcrB/AcrD/AcrF family AL541_03730 PF08402 TOBE domain AL541_03730 PF00005 ABC transporter AL541_03755 PF07702 UTRA domain AL541_03755 PF00392 Bacterial regulatory proteins, gntR family AL541_03760 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_03765 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL541_03765 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL541_03765 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AL541_03765 PF00703 Glycosyl hydrolases family 2 AL541_03780 PF13416 Bacterial extracellular solute-binding protein AL541_03785 PF00579 tRNA synthetases class I (W and Y) AL541_03790 PF00196 Bacterial regulatory proteins, luxR family AL541_03790 PF00072 Response regulator receiver domain AL541_03800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL541_03800 PF02896 PEP-utilising enzyme, TIM barrel domain AL541_03800 PF00391 PEP-utilising enzyme, mobile domain AL541_03805 PF03618 Kinase/pyrophosphorylase AL541_03810 PF17763 Glutaminase/Asparaginase C-terminal domain AL541_03810 PF00710 Asparaginase, N-terminal AL541_03820 PF03466 LysR substrate binding domain AL541_03820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03835 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL541_03840 PF00202 Aminotransferase class-III AL541_03845 PF00171 Aldehyde dehydrogenase family AL541_03850 PF01037 Lrp/AsnC ligand binding domain AL541_03855 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL541_03860 PF01321 Creatinase/Prolidase N-terminal domain AL541_03860 PF00557 Metallopeptidase family M24 AL541_03865 PF00392 Bacterial regulatory proteins, gntR family AL541_03865 PF00155 Aminotransferase class I and II AL541_03885 PF08240 Alcohol dehydrogenase GroES-like domain AL541_03885 PF00107 Zinc-binding dehydrogenase AL541_03890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_03900 PF03466 LysR substrate binding domain AL541_03900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03905 PF03466 LysR substrate binding domain AL541_03915 PF00270 DEAD/DEAH box helicase AL541_03915 PF00271 Helicase conserved C-terminal domain AL541_03945 PF00155 Aminotransferase class I and II AL541_03950 PF01497 Periplasmic binding protein AL541_03950 PF12833 Helix-turn-helix domain AL541_03955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_03955 PF03466 LysR substrate binding domain AL541_03960 PF00106 short chain dehydrogenase AL541_03995 PF04151 Bacterial pre-peptidase C-terminal domain AL541_03995 PF05922 Peptidase inhibitor I9 AL541_03995 PF00082 Subtilase family AL541_04005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_04005 PF03466 LysR substrate binding domain AL541_04010 PF00593 TonB dependent receptor AL541_04010 PF07715 TonB-dependent Receptor Plug Domain AL541_04020 PF11471 Maltoporin periplasmic N-terminal extension AL541_04020 PF02264 LamB porin AL541_04025 PF00356 Bacterial regulatory proteins, lacI family AL541_04030 PF00367 phosphotransferase system, EIIB AL541_04030 PF02378 Phosphotransferase system, EIIC AL541_04035 PF00294 pfkB family carbohydrate kinase AL541_04040 PF08244 Glycosyl hydrolases family 32 C terminal AL541_04040 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL541_04045 PF01872 RibD C-terminal domain AL541_04050 PF02909 Tetracyclin repressor-like, C-terminal domain AL541_04050 PF00440 Bacterial regulatory proteins, tetR family AL541_04055 PF02798 Glutathione S-transferase, N-terminal domain AL541_04065 PF07943 Penicillin-binding protein 5, C-terminal domain AL541_04065 PF00768 D-alanyl-D-alanine carboxypeptidase AL541_04075 PF08534 Redoxin AL541_04075 PF00462 Glutaredoxin AL541_04080 PF00962 Adenosine/AMP deaminase AL541_04095 PF00313 'Cold-shock' DNA-binding domain AL541_04100 PF02678 Pirin AL541_04100 PF05726 Pirin C-terminal cupin domain AL541_04105 PF01734 Patatin-like phospholipase AL541_04120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL541_04125 PF08019 Phosphoethanolamine transferase EptA/EptB AL541_04125 PF00884 Sulfatase AL541_04130 PF01219 Prokaryotic diacylglycerol kinase AL541_04140 PF16527 Two-component sensor protein CpxA, periplasmic domain AL541_04140 PF00672 HAMP domain AL541_04140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_04140 PF00512 His Kinase A (phospho-acceptor) domain AL541_04145 PF00486 Transcriptional regulatory protein, C terminal AL541_04145 PF00072 Response regulator receiver domain AL541_04160 PF01323 DSBA-like thioredoxin domain AL541_04175 PF00255 Glutathione peroxidase AL541_04180 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL541_04190 PF07690 Major Facilitator Superfamily AL541_04205 PF01966 HD domain AL541_04210 PF07969 Amidohydrolase family AL541_04215 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL541_04220 PF01769 Divalent cation transporter AL541_04220 PF03448 MgtE intracellular N domain AL541_04220 PF00571 CBS domain AL541_04225 PF03109 ABC1 family AL541_04230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_04230 PF00529 HlyD membrane-fusion protein of T1SS AL541_04240 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL541_04240 PF12833 Helix-turn-helix domain AL541_04255 PF00486 Transcriptional regulatory protein, C terminal AL541_04255 PF00072 Response regulator receiver domain AL541_04260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_04260 PF16527 Two-component sensor protein CpxA, periplasmic domain AL541_04260 PF00512 His Kinase A (phospho-acceptor) domain AL541_04260 PF00672 HAMP domain AL541_04270 PF00155 Aminotransferase class I and II AL541_04270 PF00392 Bacterial regulatory proteins, gntR family AL541_04275 PF13520 Amino acid permease AL541_04290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_04290 PF03466 LysR substrate binding domain AL541_04305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL541_04305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_04310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_04310 PF00512 His Kinase A (phospho-acceptor) domain AL541_04310 PF01627 Hpt domain AL541_04310 PF00672 HAMP domain AL541_04310 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL541_04310 PF00072 Response regulator receiver domain AL541_04315 PF01554 MatE AL541_04320 PF04363 Protein of unknown function (DUF496) AL541_04330 PF04337 Protein of unknown function, DUF480 AL541_04335 PF01541 GIY-YIG catalytic domain AL541_04345 PF13407 Periplasmic binding protein domain AL541_04350 PF00512 His Kinase A (phospho-acceptor) domain AL541_04350 PF09308 LuxQ, periplasmic AL541_04350 PF00072 Response regulator receiver domain AL541_04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_04355 PF01047 MarR family AL541_04360 PF00529 HlyD membrane-fusion protein of T1SS AL541_04360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_04380 PF01037 Lrp/AsnC ligand binding domain AL541_04410 PF02355 Protein export membrane protein AL541_04410 PF13721 SecD export protein N-terminal TM region AL541_04410 PF07549 SecD/SecF GG Motif AL541_04415 PF02355 Protein export membrane protein AL541_04415 PF07549 SecD/SecF GG Motif AL541_04425 PF01810 LysE type translocator AL541_04430 PF00106 short chain dehydrogenase AL541_04435 PF02803 Thiolase, C-terminal domain AL541_04435 PF00108 Thiolase, N-terminal domain AL541_04445 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL541_04455 PF03264 NapC/NirT cytochrome c family, N-terminal region AL541_04460 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL541_04465 PF01568 Molydopterin dinucleotide binding domain AL541_04465 PF00384 Molybdopterin oxidoreductase AL541_04465 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_04475 PF13187 4Fe-4S dicluster domain AL541_04475 PF12838 4Fe-4S dicluster domain AL541_04480 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL541_04480 PF07730 Histidine kinase AL541_04480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_04480 PF00672 HAMP domain AL541_04485 PF00072 Response regulator receiver domain AL541_04485 PF00196 Bacterial regulatory proteins, luxR family AL541_04500 PF07687 Peptidase dimerisation domain AL541_04500 PF01546 Peptidase family M20/M25/M40 AL541_04505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_04510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_04515 PF00873 AcrB/AcrD/AcrF family AL541_04520 PF00672 HAMP domain AL541_04520 PF12729 Four helix bundle sensory module for signal transduction AL541_04520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_04525 PF00472 RF-1 domain AL541_04530 PF13419 Haloacid dehalogenase-like hydrolase AL541_04535 PF01389 OmpA-like transmembrane domain AL541_04535 PF00691 OmpA family AL541_04545 PF00793 DAHP synthetase I family AL541_04550 PF07690 Major Facilitator Superfamily AL541_04555 PF12729 Four helix bundle sensory module for signal transduction AL541_04555 PF00672 HAMP domain AL541_04555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_04560 PF02779 Transketolase, pyrimidine binding domain AL541_04560 PF00456 Transketolase, thiamine diphosphate binding domain AL541_04560 PF02780 Transketolase, C-terminal domain AL541_04565 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL541_04585 PF00581 Rhodanese-like domain AL541_04600 PF00899 ThiF family AL541_04605 PF00994 Probable molybdopterin binding domain AL541_04605 PF03453 MoeA N-terminal region (domain I and II) AL541_04605 PF03454 MoeA C-terminal region (domain IV) AL541_04610 PF01227 GTP cyclohydrolase I AL541_04620 PF00654 Voltage gated chloride channel AL541_04635 PF00248 Aldo/keto reductase family AL541_04640 PF00072 Response regulator receiver domain AL541_04650 PF03853 YjeF-related protein N-terminus AL541_04650 PF01256 Carbohydrate kinase AL541_04655 PF00478 IMP dehydrogenase / GMP reductase domain AL541_04680 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL541_04680 PF07971 Glycosyl hydrolase family 92 AL541_04685 PF07971 Glycosyl hydrolase family 92 AL541_04685 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL541_04695 PF07971 Glycosyl hydrolase family 92 AL541_04695 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL541_04700 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL541_04700 PF07971 Glycosyl hydrolase family 92 AL541_04715 PF01238 Phosphomannose isomerase type I AL541_04720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_04720 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_04725 PF12833 Helix-turn-helix domain AL541_04735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_04765 PF08525 Opacity-associated protein A N-terminal motif AL541_04765 PF01551 Peptidase family M23 AL541_04765 PF01476 LysM domain AL541_04790 PF00158 Sigma-54 interaction domain AL541_04790 PF02954 Bacterial regulatory protein, Fis family AL541_04795 PF07724 AAA domain (Cdc48 subfamily) AL541_04795 PF00004 ATPase family associated with various cellular activities (AAA) AL541_04795 PF17871 AAA lid domain AL541_04795 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_04800 PF05638 Type VI secretion system effector, Hcp AL541_04805 PF04717 Type VI secretion system, phage-baseplate injector AL541_04830 PF00069 Protein kinase domain AL541_04865 PF01037 Lrp/AsnC ligand binding domain AL541_04930 PF07690 Major Facilitator Superfamily AL541_04940 PF03466 LysR substrate binding domain AL541_04940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_04945 PF00106 short chain dehydrogenase AL541_04950 PF00582 Universal stress protein family AL541_04960 PF13244 Domain of unknown function (DUF4040) AL541_04960 PF00361 Proton-conducting membrane transporter AL541_04960 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AL541_04960 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AL541_04980 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AL541_04985 PF03334 Na+/H+ antiporter subunit AL541_04990 PF00392 Bacterial regulatory proteins, gntR family AL541_04990 PF07702 UTRA domain AL541_04995 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL541_04995 PF02056 Family 4 glycosyl hydrolase AL541_05000 PF02378 Phosphotransferase system, EIIC AL541_05000 PF00367 phosphotransferase system, EIIB AL541_05005 PF13193 AMP-binding enzyme C-terminal domain AL541_05005 PF00501 AMP-binding enzyme AL541_05010 PF00766 Electron transfer flavoprotein FAD-binding domain AL541_05010 PF01012 Electron transfer flavoprotein domain AL541_05015 PF01012 Electron transfer flavoprotein domain AL541_05030 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL541_05030 PF00005 ABC transporter AL541_05035 PF00501 AMP-binding enzyme AL541_05055 PF00005 ABC transporter AL541_05060 PF14535 AMP-binding enzyme C-terminal domain AL541_05060 PF00501 AMP-binding enzyme AL541_05065 PF05724 Thiopurine S-methyltransferase (TPMT) AL541_05095 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_05100 PF00106 short chain dehydrogenase AL541_05105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL541_05105 PF00205 Thiamine pyrophosphate enzyme, central domain AL541_05105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL541_05110 PF03306 Alpha-acetolactate decarboxylase AL541_05115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_05115 PF03466 LysR substrate binding domain AL541_05120 PF13419 Haloacid dehalogenase-like hydrolase AL541_05135 PF02322 Cytochrome bd terminal oxidase subunit II AL541_05140 PF01654 Cytochrome bd terminal oxidase subunit I AL541_05145 PF00392 Bacterial regulatory proteins, gntR family AL541_05145 PF00155 Aminotransferase class I and II AL541_05150 PF14602 Hexapeptide repeat of succinyl-transferase AL541_05150 PF12464 Maltose acetyltransferase AL541_05160 PF00924 Mechanosensitive ion channel AL541_05160 PF12794 Mechanosensitive ion channel inner membrane domain 1 AL541_05160 PF12795 Mechanosensitive ion channel porin domain AL541_05170 PF00682 HMGL-like AL541_05175 PF02785 Biotin carboxylase C-terminal domain AL541_05175 PF00364 Biotin-requiring enzyme AL541_05175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL541_05175 PF00289 Biotin carboxylase, N-terminal domain AL541_05180 PF00378 Enoyl-CoA hydratase/isomerase AL541_05185 PF01039 Carboxyl transferase domain AL541_05190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_05190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_05190 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_05195 PF09278 MerR, DNA binding AL541_05195 PF00376 MerR family regulatory protein AL541_05200 PF02803 Thiolase, C-terminal domain AL541_05200 PF00108 Thiolase, N-terminal domain AL541_05205 PF00171 Aldehyde dehydrogenase family AL541_05210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_05210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_05210 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_05215 PF00378 Enoyl-CoA hydratase/isomerase AL541_05225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_05225 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL541_05235 PF00072 Response regulator receiver domain AL541_05235 PF00990 Diguanylate cyclase, GGDEF domain AL541_05240 PF00440 Bacterial regulatory proteins, tetR family AL541_05240 PF13977 BetI-type transcriptional repressor, C-terminal AL541_05245 PF00171 Aldehyde dehydrogenase family AL541_05250 PF00732 GMC oxidoreductase AL541_05250 PF05199 GMC oxidoreductase AL541_05255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL541_05260 PF00528 Binding-protein-dependent transport system inner membrane component AL541_05265 PF00571 CBS domain AL541_05265 PF00005 ABC transporter AL541_05270 PF00881 Nitroreductase family AL541_05280 PF01145 SPFH domain / Band 7 family AL541_05280 PF16200 C-terminal region of band_7 AL541_05290 PF03150 Di-haem cytochrome c peroxidase AL541_05290 PF00034 Cytochrome c AL541_05295 PF00512 His Kinase A (phospho-acceptor) domain AL541_05295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_05295 PF09308 LuxQ, periplasmic AL541_05295 PF00072 Response regulator receiver domain AL541_05305 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL541_05305 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL541_05315 PF04116 Fatty acid hydroxylase superfamily AL541_05360 PF00563 EAL domain AL541_05360 PF00990 Diguanylate cyclase, GGDEF domain AL541_05365 PF05025 RbsD / FucU transport protein family AL541_05370 PF00005 ABC transporter AL541_05375 PF02653 Branched-chain amino acid transport system / permease component AL541_05380 PF13407 Periplasmic binding protein domain AL541_05385 PF00294 pfkB family carbohydrate kinase AL541_05390 PF00356 Bacterial regulatory proteins, lacI family AL541_05400 PF04973 Nicotinamide mononucleotide transporter AL541_05405 PF01048 Phosphorylase superfamily AL541_05415 PF01497 Periplasmic binding protein AL541_05420 PF01032 FecCD transport family AL541_05425 PF01032 FecCD transport family AL541_05430 PF00005 ABC transporter AL541_05435 PF13411 MerR HTH family regulatory protein AL541_05445 PF07715 TonB-dependent Receptor Plug Domain AL541_05445 PF00593 TonB dependent receptor AL541_05480 PF12805 FUSC-like inner membrane protein yccS AL541_05485 PF00580 UvrD/REP helicase N-terminal domain AL541_05485 PF12462 DNA helicase IV / RNA helicase N terminal AL541_05485 PF13361 UvrD-like helicase C-terminal domain AL541_05490 PF02142 MGS-like domain AL541_05495 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL541_05500 PF00512 His Kinase A (phospho-acceptor) domain AL541_05500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_05500 PF00672 HAMP domain AL541_05500 PF00072 Response regulator receiver domain AL541_05500 PF01627 Hpt domain AL541_05515 PF00072 Response regulator receiver domain AL541_05515 PF00486 Transcriptional regulatory protein, C terminal AL541_05520 PF00884 Sulfatase AL541_05525 PF03466 LysR substrate binding domain AL541_05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_05530 PF00884 Sulfatase AL541_05530 PF16385 Domain of unknown function AL541_05535 PF13186 Iron-sulfur cluster-binding domain AL541_05535 PF04055 Radical SAM superfamily AL541_05540 PF07726 ATPase family associated with various cellular activities (AAA) AL541_05540 PF17863 AAA lid domain AL541_05555 PF00092 von Willebrand factor type A domain AL541_05570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_05575 PF03466 LysR substrate binding domain AL541_05575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_05580 PF00781 Diacylglycerol kinase catalytic domain AL541_05585 PF04076 Bacterial OB fold (BOF) protein AL541_05595 PF18081 Fanconi anemia-associated nuclease SAP domain AL541_05595 PF08774 VRR-NUC domain AL541_05610 PF03606 C4-dicarboxylate anaerobic carrier AL541_05620 PF00814 Glycoprotease family AL541_05620 PF00583 Acetyltransferase (GNAT) family AL541_05630 PF00072 Response regulator receiver domain AL541_05630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_05635 PF00155 Aminotransferase class I and II AL541_05640 PF01926 50S ribosome-binding GTPase AL541_05645 PF00072 Response regulator receiver domain AL541_05645 PF09456 RcsC Alpha-Beta-Loop (ABL) AL541_05645 PF00512 His Kinase A (phospho-acceptor) domain AL541_05645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_05650 PF03707 Bacterial signalling protein N terminal repeat AL541_05650 PF00990 Diguanylate cyclase, GGDEF domain AL541_05650 PF13188 PAS domain AL541_05650 PF00563 EAL domain AL541_05655 PF00196 Bacterial regulatory proteins, luxR family AL541_05655 PF00072 Response regulator receiver domain AL541_05660 PF00990 Diguanylate cyclase, GGDEF domain AL541_05670 PF00072 Response regulator receiver domain AL541_05670 PF00196 Bacterial regulatory proteins, luxR family AL541_05680 PF00072 Response regulator receiver domain AL541_05680 PF01584 CheW-like domain AL541_05685 PF07963 Prokaryotic N-terminal methylation motif AL541_05685 PF08334 Type II secretion system (T2SS), protein G AL541_05695 PF00892 EamA-like transporter family AL541_05715 PF00893 Small Multidrug Resistance protein AL541_05720 PF00892 EamA-like transporter family AL541_05735 PF00171 Aldehyde dehydrogenase family AL541_05745 PF13187 4Fe-4S dicluster domain AL541_05745 PF01645 Conserved region in glutamate synthase AL541_05750 PF00141 Peroxidase AL541_05765 PF01757 Acyltransferase family AL541_05775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_05780 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_05800 PF03448 MgtE intracellular N domain AL541_05800 PF01769 Divalent cation transporter AL541_05800 PF00571 CBS domain AL541_05835 PF01327 Polypeptide deformylase AL541_05840 PF00376 MerR family regulatory protein AL541_05840 PF09278 MerR, DNA binding AL541_05850 PF02253 Phospholipase A1 AL541_05870 PF00005 ABC transporter AL541_05870 PF00664 ABC transporter transmembrane region AL541_05880 PF00929 Exonuclease AL541_05880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL541_05880 PF14579 Helix-hairpin-helix motif AL541_05880 PF11490 DNA polymerase III polC-type N-terminus II AL541_05880 PF02811 PHP domain AL541_05880 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL541_05930 PF12833 Helix-turn-helix domain AL541_05935 PF02627 Carboxymuconolactone decarboxylase family AL541_05940 PF00892 EamA-like transporter family AL541_05945 PF03466 LysR substrate binding domain AL541_05945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_05950 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL541_05950 PF00753 Metallo-beta-lactamase superfamily AL541_05960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_05965 PF02347 Glycine cleavage system P-protein AL541_05970 PF01597 Glycine cleavage H-protein AL541_05975 PF00464 Serine hydroxymethyltransferase AL541_05985 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL541_05985 PF01571 Aminomethyltransferase folate-binding domain AL541_06005 PF00873 AcrB/AcrD/AcrF family AL541_06015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_06015 PF02378 Phosphotransferase system, EIIC AL541_06020 PF00294 pfkB family carbohydrate kinase AL541_06025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_06025 PF00381 PTS HPr component phosphorylation site AL541_06030 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL541_06030 PF00356 Bacterial regulatory proteins, lacI family AL541_06045 PF00563 EAL domain AL541_06045 PF01590 GAF domain AL541_06045 PF00990 Diguanylate cyclase, GGDEF domain AL541_06045 PF00989 PAS fold AL541_06050 PF00528 Binding-protein-dependent transport system inner membrane component AL541_06055 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_06060 PF00528 Binding-protein-dependent transport system inner membrane component AL541_06065 PF00005 ABC transporter AL541_06075 PF00465 Iron-containing alcohol dehydrogenase AL541_06080 PF06719 AraC-type transcriptional regulator N-terminus AL541_06080 PF12833 Helix-turn-helix domain AL541_06090 PF06483 Chitinase C AL541_06090 PF00704 Glycosyl hydrolases family 18 AL541_06095 PF00483 Nucleotidyl transferase AL541_06100 PF01268 Formate--tetrahydrofolate ligase AL541_06105 PF00294 pfkB family carbohydrate kinase AL541_06120 PF13419 Haloacid dehalogenase-like hydrolase AL541_06130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_06130 PF00672 HAMP domain AL541_06140 PF04336 Acyl carrier protein phosphodiesterase AL541_06145 PF00270 DEAD/DEAH box helicase AL541_06145 PF00271 Helicase conserved C-terminal domain AL541_06165 PF01292 Prokaryotic cytochrome b561 AL541_06170 PF04264 YceI-like domain AL541_06175 PF01226 Formate/nitrite transporter AL541_06180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_06180 PF03466 LysR substrate binding domain AL541_06185 PF06496 Protein of unknown function (DUF1097) AL541_06190 PF11398 Protein of unknown function (DUF2813) AL541_06195 PF00149 Calcineurin-like phosphoesterase AL541_06195 PF02872 5'-nucleotidase, C-terminal domain AL541_06200 PF03741 Integral membrane protein TerC family AL541_06220 PF12262 Bacterial virulence factor lipase N-terminal AL541_06225 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_06240 PF03061 Thioesterase superfamily AL541_06250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_06250 PF12793 Sugar transport-related sRNA regulator N-term AL541_06275 PF00684 DnaJ central domain AL541_06275 PF00226 DnaJ domain AL541_06275 PF01556 DnaJ C terminal domain AL541_06285 PF03707 Bacterial signalling protein N terminal repeat AL541_06285 PF00563 EAL domain AL541_06285 PF00990 Diguanylate cyclase, GGDEF domain AL541_06285 PF13188 PAS domain AL541_06290 PF07055 Enoyl reductase FAD binding domain AL541_06290 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL541_06290 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL541_06295 PF13472 GDSL-like Lipase/Acylhydrolase family AL541_06300 PF00005 ABC transporter AL541_06315 PF02626 Carboxyltransferase domain, subdomain A and B AL541_06320 PF02682 Carboxyltransferase domain, subdomain C and D AL541_06325 PF03746 LamB/YcsF family AL541_06330 PF05231 MASE1 AL541_06330 PF13426 PAS domain AL541_06330 PF08448 PAS fold AL541_06330 PF08447 PAS fold AL541_06330 PF00563 EAL domain AL541_06330 PF00990 Diguanylate cyclase, GGDEF domain AL541_06335 PF16363 GDP-mannose 4,6 dehydratase AL541_06345 PF00593 TonB dependent receptor AL541_06345 PF04886 PT repeat AL541_06345 PF07715 TonB-dependent Receptor Plug Domain AL541_06350 PF03466 LysR substrate binding domain AL541_06350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_06355 PF00583 Acetyltransferase (GNAT) family AL541_06355 PF13607 Succinyl-CoA ligase like flavodoxin domain AL541_06355 PF13380 CoA binding domain AL541_06360 PF05036 Sporulation related domain AL541_06365 PF01820 D-ala D-ala ligase N-terminus AL541_06365 PF07478 D-ala D-ala ligase C-terminus AL541_06375 PF01253 Translation initiation factor SUI1 AL541_06480 PF05840 Bacteriophage replication gene A protein (GPA) AL541_06535 PF03701 Uncharacterised protein family (UPF0181) AL541_06550 PF00072 Response regulator receiver domain AL541_06550 PF00486 Transcriptional regulatory protein, C terminal AL541_06560 PF02233 NAD(P) transhydrogenase beta subunit AL541_06565 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL541_06565 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL541_06565 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL541_06580 PF00072 Response regulator receiver domain AL541_06580 PF00990 Diguanylate cyclase, GGDEF domain AL541_06585 PF01590 GAF domain AL541_06585 PF00360 Phytochrome region AL541_06585 PF00990 Diguanylate cyclase, GGDEF domain AL541_06585 PF00563 EAL domain AL541_06595 PF03459 TOBE domain AL541_06595 PF00005 ABC transporter AL541_06600 PF00528 Binding-protein-dependent transport system inner membrane component AL541_06610 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL541_06610 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL541_06615 PF04076 Bacterial OB fold (BOF) protein AL541_06625 PF18030 RimK PreATP-grasp domain AL541_06625 PF08443 RimK-like ATP-grasp domain AL541_06630 PF00155 Aminotransferase class I and II AL541_06635 PF12833 Helix-turn-helix domain AL541_06635 PF12852 Cupin AL541_06640 PF01554 MatE AL541_06650 PF03477 ATP cone domain AL541_06650 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL541_06670 PF04143 Sulphur transport AL541_06680 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_06680 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_06685 PF01177 Asp/Glu/Hydantoin racemase AL541_06690 PF02567 Phenazine biosynthesis-like protein AL541_06705 PF00384 Molybdopterin oxidoreductase AL541_06715 PF03466 LysR substrate binding domain AL541_06715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_06720 PF02634 FdhD/NarQ family AL541_06725 PF07690 Major Facilitator Superfamily AL541_06730 PF00196 Bacterial regulatory proteins, luxR family AL541_06730 PF00072 Response regulator receiver domain AL541_06735 PF07730 Histidine kinase AL541_06735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_06735 PF05231 MASE1 AL541_06740 PF07690 Major Facilitator Superfamily AL541_06745 PF01238 Phosphomannose isomerase type I AL541_06765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL541_06765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL541_06770 PF00085 Thioredoxin AL541_06775 PF07690 Major Facilitator Superfamily AL541_06780 PF11756 Nitrous oxide-stimulated promoter AL541_06785 PF13302 Acetyltransferase (GNAT) domain AL541_06795 PF00593 TonB dependent receptor AL541_06795 PF07715 TonB-dependent Receptor Plug Domain AL541_06810 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL541_06825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_06825 PF10414 Sirohaem synthase dimerisation region AL541_06825 PF14824 Sirohaem biosynthesis protein central AL541_06830 PF01226 Formate/nitrite transporter AL541_06835 PF13806 Rieske-like [2Fe-2S] domain AL541_06840 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL541_06840 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_06840 PF04324 BFD-like [2Fe-2S] binding domain AL541_06840 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL541_06840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL541_06845 PF14760 Rnk N-terminus AL541_06845 PF01272 Transcription elongation factor, GreA/GreB, C-term AL541_06855 PF03707 Bacterial signalling protein N terminal repeat AL541_06855 PF00990 Diguanylate cyclase, GGDEF domain AL541_06855 PF00563 EAL domain AL541_06865 PF00990 Diguanylate cyclase, GGDEF domain AL541_06865 PF00563 EAL domain AL541_06865 PF03707 Bacterial signalling protein N terminal repeat AL541_06870 PF00296 Luciferase-like monooxygenase AL541_06905 PF09154 Domain of unknown function (DUF1939) AL541_06905 PF00128 Alpha amylase, catalytic domain AL541_06920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_06920 PF00672 HAMP domain AL541_06925 PF01168 Alanine racemase, N-terminal domain AL541_06925 PF00842 Alanine racemase, C-terminal domain AL541_06940 PF01565 FAD binding domain AL541_06940 PF09330 D-lactate dehydrogenase, membrane binding AL541_06945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_06945 PF03466 LysR substrate binding domain AL541_06960 PF05762 VWA domain containing CoxE-like protein AL541_06965 PF07728 AAA domain (dynein-related subfamily) AL541_06965 PF17868 AAA lid domain AL541_06965 PF12592 Protein of unknown function (DUF3763) AL541_06975 PF01212 Beta-eliminating lyase AL541_06985 PF03606 C4-dicarboxylate anaerobic carrier AL541_06995 PF08212 Lipocalin-like domain AL541_07005 PF13476 AAA domain AL541_07010 PF12320 Type 5 capsule protein repressor C-terminal domain AL541_07010 PF00149 Calcineurin-like phosphoesterase AL541_07025 PF16671 Actin cross-linking domain AL541_07025 PF04717 Type VI secretion system, phage-baseplate injector AL541_07035 PF17871 AAA lid domain AL541_07035 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_07035 PF07724 AAA domain (Cdc48 subfamily) AL541_07035 PF00004 ATPase family associated with various cellular activities (AAA) AL541_07095 PF00691 OmpA family AL541_07095 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL541_07115 PF00069 Protein kinase domain AL541_07115 PF03793 PASTA domain AL541_07135 PF00072 Response regulator receiver domain AL541_07135 PF00211 Adenylate and Guanylate cyclase catalytic domain AL541_07165 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL541_07165 PF13806 Rieske-like [2Fe-2S] domain AL541_07165 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_07165 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL541_07165 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL541_07165 PF04324 BFD-like [2Fe-2S] binding domain AL541_07170 PF00005 ABC transporter AL541_07175 PF00528 Binding-protein-dependent transport system inner membrane component AL541_07180 PF00005 ABC transporter AL541_07190 PF00072 Response regulator receiver domain AL541_07190 PF03861 ANTAR domain AL541_07195 PF01738 Dienelactone hydrolase family AL541_07200 PF00591 Glycosyl transferase family, a/b domain AL541_07200 PF02885 Glycosyl transferase family, helical bundle domain AL541_07205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_07205 PF10414 Sirohaem synthase dimerisation region AL541_07205 PF14824 Sirohaem biosynthesis protein central AL541_07210 PF01568 Molydopterin dinucleotide binding domain AL541_07210 PF00384 Molybdopterin oxidoreductase AL541_07210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_07220 PF03222 Tryptophan/tyrosine permease family AL541_07230 PF00990 Diguanylate cyclase, GGDEF domain AL541_07230 PF07694 5TMR of 5TMR-LYT AL541_07240 PF01483 Proprotein convertase P-domain AL541_07240 PF00082 Subtilase family AL541_07260 PF00072 Response regulator receiver domain AL541_07260 PF00486 Transcriptional regulatory protein, C terminal AL541_07295 PF04314 Copper chaperone PCu(A)C AL541_07305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_07305 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL541_07315 PF01081 KDPG and KHG aldolase AL541_07320 PF00294 pfkB family carbohydrate kinase AL541_07325 PF07883 Cupin domain AL541_07330 PF05426 Alginate lyase AL541_07330 PF07940 Heparinase II/III-like protein AL541_07335 PF05426 Alginate lyase AL541_07335 PF07940 Heparinase II/III-like protein AL541_07340 PF08787 Alginate lyase AL541_07345 PF08787 Alginate lyase AL541_07360 PF08787 Alginate lyase AL541_07370 PF00392 Bacterial regulatory proteins, gntR family AL541_07370 PF07729 FCD domain AL541_07375 PF07729 FCD domain AL541_07375 PF00392 Bacterial regulatory proteins, gntR family AL541_07380 PF00571 CBS domain AL541_07385 PF11490 DNA polymerase III polC-type N-terminus II AL541_07385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL541_07385 PF14579 Helix-hairpin-helix motif AL541_07385 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL541_07385 PF02811 PHP domain AL541_07385 PF00929 Exonuclease AL541_07390 PF00474 Sodium:solute symporter family AL541_07405 PF00676 Dehydrogenase E1 component AL541_07410 PF02780 Transketolase, C-terminal domain AL541_07410 PF02779 Transketolase, pyrimidine binding domain AL541_07415 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL541_07415 PF02817 e3 binding domain AL541_07415 PF00364 Biotin-requiring enzyme AL541_07420 PF01012 Electron transfer flavoprotein domain AL541_07420 PF00766 Electron transfer flavoprotein FAD-binding domain AL541_07430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_07430 PF03466 LysR substrate binding domain AL541_07440 PF13417 Glutathione S-transferase, N-terminal domain AL541_07440 PF00043 Glutathione S-transferase, C-terminal domain AL541_07445 PF03466 LysR substrate binding domain AL541_07445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_07455 PF00528 Binding-protein-dependent transport system inner membrane component AL541_07460 PF00528 Binding-protein-dependent transport system inner membrane component AL541_07465 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_07470 PF00005 ABC transporter AL541_07500 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_07510 PF00171 Aldehyde dehydrogenase family AL541_07525 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_07525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_07530 PF01040 UbiA prenyltransferase family AL541_07540 PF00510 Cytochrome c oxidase subunit III AL541_07545 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL541_07550 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL541_07550 PF06481 COX Aromatic Rich Motif AL541_07560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_07560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL541_07565 PF00378 Enoyl-CoA hydratase/isomerase AL541_07570 PF00378 Enoyl-CoA hydratase/isomerase AL541_07580 PF00171 Aldehyde dehydrogenase family AL541_07585 PF02803 Thiolase, C-terminal domain AL541_07585 PF00108 Thiolase, N-terminal domain AL541_07590 PF09278 MerR, DNA binding AL541_07590 PF00376 MerR family regulatory protein AL541_07595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_07595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_07595 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_07600 PF01039 Carboxyl transferase domain AL541_07605 PF00378 Enoyl-CoA hydratase/isomerase AL541_07610 PF00682 HMGL-like AL541_07620 PF13426 PAS domain AL541_07620 PF08447 PAS fold AL541_07620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_07630 PF01914 MarC family integral membrane protein AL541_07640 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL541_07645 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL541_07645 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL541_07650 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL541_07650 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL541_07660 PF01476 LysM domain AL541_07660 PF01551 Peptidase family M23 AL541_07660 PF08525 Opacity-associated protein A N-terminal motif AL541_07665 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL541_07670 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL541_07670 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL541_07675 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_07680 PF01979 Amidohydrolase family AL541_07685 PF01475 Ferric uptake regulator family AL541_07700 PF01925 Sulfite exporter TauE/SafE AL541_07715 PF12146 Serine aminopeptidase, S33 AL541_07720 PF12146 Serine aminopeptidase, S33 AL541_07725 PF03466 LysR substrate binding domain AL541_07725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_07730 PF00871 Acetokinase family AL541_07745 PF03880 DbpA RNA binding domain AL541_07745 PF00270 DEAD/DEAH box helicase AL541_07745 PF00271 Helicase conserved C-terminal domain AL541_07750 PF00773 RNB domain AL541_07750 PF08206 Ribonuclease B OB domain AL541_07750 PF00575 S1 RNA binding domain AL541_07755 PF12833 Helix-turn-helix domain AL541_07765 PF12849 PBP superfamily domain AL541_07780 PF12729 Four helix bundle sensory module for signal transduction AL541_07780 PF00672 HAMP domain AL541_07780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_07785 PF00005 ABC transporter AL541_07790 PF12792 CSS motif domain associated with EAL AL541_07790 PF00563 EAL domain AL541_07810 PF00271 Helicase conserved C-terminal domain AL541_07810 PF00270 DEAD/DEAH box helicase AL541_07815 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL541_07815 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL541_07825 PF01470 Pyroglutamyl peptidase AL541_07835 PF00313 'Cold-shock' DNA-binding domain AL541_07845 PF00291 Pyridoxal-phosphate dependent enzyme AL541_07855 PF09905 DNA-binding protein VF530 AL541_07860 PF00271 Helicase conserved C-terminal domain AL541_07860 PF00270 DEAD/DEAH box helicase AL541_07865 PF07690 Major Facilitator Superfamily AL541_07870 PF03466 LysR substrate binding domain AL541_07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_07880 PF12843 Putative quorum-sensing-regulated virulence factor AL541_07900 PF01329 Pterin 4 alpha carbinolamine dehydratase AL541_07905 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL541_07910 PF00501 AMP-binding enzyme AL541_07910 PF13193 AMP-binding enzyme C-terminal domain AL541_07920 PF03466 LysR substrate binding domain AL541_07920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_07930 PF00892 EamA-like transporter family AL541_07940 PF00465 Iron-containing alcohol dehydrogenase AL541_07945 PF07995 Glucose / Sorbosone dehydrogenase AL541_07950 PF17676 LD-carboxypeptidase C-terminal domain AL541_07950 PF02016 LD-carboxypeptidase N-terminal domain AL541_07960 PF00210 Ferritin-like domain AL541_07965 PF00672 HAMP domain AL541_07965 PF17200 Single Cache domain 2 AL541_07965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_07985 PF13533 Biotin-lipoyl like AL541_07990 PF00072 Response regulator receiver domain AL541_07990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_07995 PF02321 Outer membrane efflux protein AL541_08000 PF00005 ABC transporter AL541_08000 PF00664 ABC transporter transmembrane region AL541_08005 PF00005 ABC transporter AL541_08005 PF00664 ABC transporter transmembrane region AL541_08015 PF04539 Sigma-70 region 3 AL541_08015 PF04545 Sigma-70, region 4 AL541_08015 PF00140 Sigma-70 factor, region 1.2 AL541_08015 PF04542 Sigma-70 region 2 AL541_08020 PF00990 Diguanylate cyclase, GGDEF domain AL541_08025 PF03889 Alternative ribosome-rescue factor A AL541_08030 PF00313 'Cold-shock' DNA-binding domain AL541_08050 PF00691 OmpA family AL541_08050 PF05736 OprF membrane domain AL541_08060 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL541_08060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_08065 PF01040 UbiA prenyltransferase family AL541_08070 PF02628 Cytochrome oxidase assembly protein AL541_08090 PF00510 Cytochrome c oxidase subunit III AL541_08095 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL541_08100 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL541_08105 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL541_08105 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL541_08110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_08110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_08110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_08110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_08120 PF01810 LysE type translocator AL541_08140 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL541_08155 PF00892 EamA-like transporter family AL541_08160 PF00462 Glutaredoxin AL541_08175 PF07690 Major Facilitator Superfamily AL541_08180 PF03466 LysR substrate binding domain AL541_08180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_08185 PF00990 Diguanylate cyclase, GGDEF domain AL541_08185 PF00563 EAL domain AL541_08185 PF08447 PAS fold AL541_08185 PF08448 PAS fold AL541_08190 PF01551 Peptidase family M23 AL541_08190 PF08525 Opacity-associated protein A N-terminal motif AL541_08190 PF01476 LysM domain AL541_08220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_08220 PF02743 Cache domain AL541_08220 PF00672 HAMP domain AL541_08230 PF03222 Tryptophan/tyrosine permease family AL541_08255 PF00248 Aldo/keto reductase family AL541_08260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_08260 PF03466 LysR substrate binding domain AL541_08280 PF01638 HxlR-like helix-turn-helix AL541_08295 PF01758 Sodium Bile acid symporter family AL541_08305 PF01161 Phosphatidylethanolamine-binding protein AL541_08310 PF02567 Phenazine biosynthesis-like protein AL541_08320 PF00005 ABC transporter AL541_08335 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL541_08335 PF01568 Molydopterin dinucleotide binding domain AL541_08335 PF00384 Molybdopterin oxidoreductase AL541_08335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_08335 PF12838 4Fe-4S dicluster domain AL541_08350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_08355 PF00873 AcrB/AcrD/AcrF family AL541_08370 PF17151 Periplasmic sensor domain AL541_08370 PF00990 Diguanylate cyclase, GGDEF domain AL541_08400 PF08220 DeoR-like helix-turn-helix domain AL541_08400 PF00455 DeoR C terminal sensor domain AL541_08405 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL541_08410 PF06005 Cell division protein ZapB AL541_08415 PF03737 Aldolase/RraA AL541_08420 PF01040 UbiA prenyltransferase family AL541_08425 PF00004 ATPase family associated with various cellular activities (AAA) AL541_08425 PF07724 AAA domain (Cdc48 subfamily) AL541_08430 PF00227 Proteasome subunit AL541_08440 PF00356 Bacterial regulatory proteins, lacI family AL541_08445 PF00270 DEAD/DEAH box helicase AL541_08445 PF00271 Helicase conserved C-terminal domain AL541_08445 PF17764 3′ DNA-binding domain (3′BD) AL541_08445 PF18074 Primosomal protein N C-terminal domain AL541_08445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL541_08455 PF01197 Ribosomal protein L31 AL541_08460 PF00338 Ribosomal protein S10p/S20e AL541_08465 PF00297 Ribosomal protein L3 AL541_08470 PF00573 Ribosomal protein L4/L1 family AL541_08475 PF00276 Ribosomal protein L23 AL541_08480 PF03947 Ribosomal Proteins L2, C-terminal domain AL541_08480 PF00181 Ribosomal Proteins L2, RNA binding domain AL541_08485 PF00203 Ribosomal protein S19 AL541_08490 PF00237 Ribosomal protein L22p/L17e AL541_08495 PF00189 Ribosomal protein S3, C-terminal domain AL541_08495 PF07650 KH domain AL541_08500 PF00252 Ribosomal protein L16p/L10e AL541_08505 PF00831 Ribosomal L29 protein AL541_08510 PF00366 Ribosomal protein S17 AL541_08515 PF00238 Ribosomal protein L14p/L23e AL541_08520 PF00467 KOW motif AL541_08520 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL541_08525 PF00673 ribosomal L5P family C-terminus AL541_08525 PF00281 Ribosomal protein L5 AL541_08530 PF00253 Ribosomal protein S14p/S29e AL541_08535 PF00410 Ribosomal protein S8 AL541_08540 PF00347 Ribosomal protein L6 AL541_08545 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL541_08550 PF03719 Ribosomal protein S5, C-terminal domain AL541_08550 PF00333 Ribosomal protein S5, N-terminal domain AL541_08555 PF00327 Ribosomal protein L30p/L7e AL541_08565 PF00344 SecY translocase AL541_08570 PF00444 Ribosomal protein L36 AL541_08575 PF00416 Ribosomal protein S13/S18 AL541_08580 PF00411 Ribosomal protein S11 AL541_08585 PF01479 S4 domain AL541_08585 PF00163 Ribosomal protein S4/S9 N-terminal domain AL541_08590 PF01000 RNA polymerase Rpb3/RpoA insert domain AL541_08590 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL541_08590 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL541_08595 PF01196 Ribosomal protein L17 AL541_08605 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL541_08605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_08615 PF13673 Acetyltransferase (GNAT) domain AL541_08620 PF03880 DbpA RNA binding domain AL541_08620 PF00270 DEAD/DEAH box helicase AL541_08620 PF00271 Helicase conserved C-terminal domain AL541_08630 PF00149 Calcineurin-like phosphoesterase AL541_08630 PF02872 5'-nucleotidase, C-terminal domain AL541_08635 PF14824 Sirohaem biosynthesis protein central AL541_08635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_08635 PF10414 Sirohaem synthase dimerisation region AL541_08640 PF01507 Phosphoadenosine phosphosulfate reductase family AL541_08645 PF00009 Elongation factor Tu GTP binding domain AL541_08650 PF03600 Citrate transporter AL541_08650 PF02080 TrkA-C domain AL541_08675 PF00005 ABC transporter AL541_08685 PF10795 Protein of unknown function (DUF2607) AL541_08690 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL541_08695 PF06526 Protein of unknown function (DUF1107) AL541_08700 PF01625 Peptide methionine sulfoxide reductase AL541_08705 PF17243 POTRA domain TamA domain 1 AL541_08705 PF07244 Surface antigen variable number repeat AL541_08705 PF01103 Surface antigen AL541_08710 PF04357 TamB, inner membrane protein subunit of TAM complex AL541_08715 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL541_08725 PF00719 Inorganic pyrophosphatase AL541_08730 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL541_08740 PF02875 Mur ligase family, glutamate ligase domain AL541_08740 PF08245 Mur ligase middle domain AL541_08740 PF01225 Mur ligase family, catalytic domain AL541_08745 PF02441 Flavoprotein AL541_08755 PF00528 Binding-protein-dependent transport system inner membrane component AL541_08760 PF00005 ABC transporter AL541_08765 PF03466 LysR substrate binding domain AL541_08765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_08770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_08790 PF16868 NMT1-like family AL541_08800 PF01316 Arginine repressor, DNA binding domain AL541_08800 PF02863 Arginine repressor, C-terminal domain AL541_08805 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL541_08805 PF00056 lactate/malate dehydrogenase, NAD binding domain AL541_08815 PF00348 Polyprenyl synthetase AL541_08820 PF00829 Ribosomal prokaryotic L21 protein AL541_08825 PF01016 Ribosomal L27 protein AL541_08830 PF01926 50S ribosome-binding GTPase AL541_08830 PF01018 GTP1/OBG AL541_08835 PF06738 Putative threonine/serine exporter AL541_08840 PF12821 Threonine/Serine exporter, ThrE AL541_08845 PF00186 Dihydrofolate reductase AL541_08850 PF00149 Calcineurin-like phosphoesterase AL541_08855 PF04379 ApaG domain AL541_08860 PF00398 Ribosomal RNA adenine dimethylase AL541_08865 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL541_08870 PF09312 SurA N-terminal domain AL541_08875 PF03968 OstA-like protein AL541_08875 PF04453 LPS transport system D AL541_08880 PF00226 DnaJ domain AL541_08880 PF05099 Tellurite resistance protein TerB AL541_08890 PF00694 Aconitase C-terminal domain AL541_08895 PF00330 Aconitase family (aconitate hydratase) AL541_08900 PF00180 Isocitrate/isopropylmalate dehydrogenase AL541_08905 PF00682 HMGL-like AL541_08905 PF08502 LeuA allosteric (dimerisation) domain AL541_08920 PF01569 PAP2 superfamily AL541_08930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_08930 PF03466 LysR substrate binding domain AL541_08935 PF00501 AMP-binding enzyme AL541_08940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL541_08940 PF00205 Thiamine pyrophosphate enzyme, central domain AL541_08940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL541_08945 PF10369 Small subunit of acetolactate synthase AL541_08950 PF07694 5TMR of 5TMR-LYT AL541_08950 PF00990 Diguanylate cyclase, GGDEF domain AL541_08960 PF00224 Pyruvate kinase, barrel domain AL541_08960 PF02887 Pyruvate kinase, alpha/beta domain AL541_08965 PF08220 DeoR-like helix-turn-helix domain AL541_08965 PF00455 DeoR C terminal sensor domain AL541_08970 PF01380 SIS domain AL541_08975 PF00465 Iron-containing alcohol dehydrogenase AL541_08980 PF02733 Dak1 domain AL541_08985 PF02734 DAK2 domain AL541_08990 PF02896 PEP-utilising enzyme, TIM barrel domain AL541_08990 PF05524 PEP-utilising enzyme, N-terminal AL541_08990 PF00391 PEP-utilising enzyme, mobile domain AL541_08995 PF02954 Bacterial regulatory protein, Fis family AL541_08995 PF00158 Sigma-54 interaction domain AL541_08995 PF00989 PAS fold AL541_09000 PF05068 Mannitol repressor AL541_09005 PF08125 Mannitol dehydrogenase C-terminal domain AL541_09005 PF01232 Mannitol dehydrogenase Rossmann domain AL541_09010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_09010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_09010 PF02378 Phosphotransferase system, EIIC AL541_09030 PF03180 NLPA lipoprotein AL541_09085 PF13657 HipA N-terminal domain AL541_09085 PF07804 HipA-like C-terminal domain AL541_09110 PF11638 DnaA N-terminal domain AL541_09110 PF00308 Bacterial dnaA protein AL541_09110 PF08299 Bacterial dnaA protein helix-turn-helix AL541_09120 PF13657 HipA N-terminal domain AL541_09120 PF07804 HipA-like C-terminal domain AL541_09135 PF04545 Sigma-70, region 4 AL541_09135 PF04539 Sigma-70 region 3 AL541_09135 PF00140 Sigma-70 factor, region 1.2 AL541_09135 PF04546 Sigma-70, non-essential region AL541_09135 PF03979 Sigma-70 factor, region 1.1 AL541_09135 PF04542 Sigma-70 region 2 AL541_09140 PF01807 CHC2 zinc finger AL541_09140 PF08275 DNA primase catalytic core, N-terminal domain AL541_09140 PF08278 DNA primase DnaG DnaB-binding AL541_09140 PF10410 DnaB-helicase binding domain of primase AL541_09145 PF09424 Yqey-like protein AL541_09150 PF01165 Ribosomal protein S21 AL541_09155 PF00814 Glycoprotease family AL541_09160 PF00561 alpha/beta hydrolase fold AL541_09165 PF02660 Glycerol-3-phosphate acyltransferase AL541_09170 PF02152 Dihydroneopterin aldolase AL541_09175 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL541_09180 PF02673 Bacitracin resistance protein BacA AL541_09185 PF12627 Probable RNA and SrmB- binding site of polymerase A AL541_09185 PF01743 Poly A polymerase head domain AL541_09185 PF01966 HD domain AL541_09190 PF01471 Putative peptidoglycan binding domain AL541_09190 PF13401 AAA domain AL541_09205 PF08239 Bacterial SH3 domain AL541_09210 PF01384 Phosphate transporter family AL541_09215 PF01865 Protein of unknown function DUF47 AL541_09220 PF01928 CYTH domain AL541_09230 PF00672 HAMP domain AL541_09230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_09230 PF02743 Cache domain AL541_09235 PF03710 Glutamate-ammonia ligase adenylyltransferase AL541_09235 PF08335 GlnD PII-uridylyltransferase AL541_09240 PF01467 Cytidylyltransferase-like AL541_09240 PF00294 pfkB family carbohydrate kinase AL541_09245 PF02321 Outer membrane efflux protein AL541_09250 PF00293 NUDIX domain AL541_09255 PF06853 Protein of unknown function (DUF1249) AL541_09260 PF00149 Calcineurin-like phosphoesterase AL541_09265 PF05728 Uncharacterised protein family (UPF0227) AL541_09270 PF00986 DNA gyrase B subunit, carboxyl terminus AL541_09270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_09270 PF00204 DNA gyrase B AL541_09270 PF01751 Toprim domain AL541_09275 PF00521 DNA gyrase/topoisomerase IV, subunit A AL541_09275 PF03989 DNA gyrase C-terminal domain, beta-propeller AL541_09280 PF13180 PDZ domain AL541_09285 PF00595 PDZ domain AL541_09290 PF06295 Protein of unknown function (DUF1043) AL541_09300 PF03969 AFG1-like ATPase AL541_09310 PF00572 Ribosomal protein L13 AL541_09315 PF00380 Ribosomal protein S9/S16 AL541_09320 PF00355 Rieske [2Fe-2S] domain AL541_09320 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL541_09325 PF00032 Cytochrome b(C-terminal)/b6/petD AL541_09325 PF00033 Cytochrome b/b6/petB AL541_09330 PF02167 Cytochrome C1 family AL541_09335 PF02798 Glutathione S-transferase, N-terminal domain AL541_09335 PF00043 Glutathione S-transferase, C-terminal domain AL541_09340 PF04386 Stringent starvation protein B AL541_09345 PF04972 BON domain AL541_09350 PF13580 SIS domain AL541_09355 PF02021 Uncharacterised protein family UPF0102 AL541_09360 PF04348 LppC putative lipoprotein AL541_09365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_09380 PF01795 MraW methylase family AL541_09385 PF04999 Cell division protein FtsL AL541_09390 PF03717 Penicillin-binding Protein dimerisation domain AL541_09390 PF00905 Penicillin binding protein transpeptidase domain AL541_09395 PF02875 Mur ligase family, glutamate ligase domain AL541_09395 PF08245 Mur ligase middle domain AL541_09395 PF01225 Mur ligase family, catalytic domain AL541_09400 PF08245 Mur ligase middle domain AL541_09400 PF02875 Mur ligase family, glutamate ligase domain AL541_09400 PF01225 Mur ligase family, catalytic domain AL541_09405 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL541_09405 PF00953 Glycosyl transferase family 4 AL541_09410 PF02875 Mur ligase family, glutamate ligase domain AL541_09410 PF08245 Mur ligase middle domain AL541_09415 PF01098 Cell cycle protein AL541_09420 PF04101 Glycosyltransferase family 28 C-terminal domain AL541_09420 PF03033 Glycosyltransferase family 28 N-terminal domain AL541_09425 PF02875 Mur ligase family, glutamate ligase domain AL541_09425 PF08245 Mur ligase middle domain AL541_09425 PF01225 Mur ligase family, catalytic domain AL541_09430 PF03799 Cell division protein FtsQ AL541_09430 PF08478 POTRA domain, FtsQ-type AL541_09435 PF02491 SHS2 domain inserted in FTSA AL541_09440 PF12327 FtsZ family, C-terminal domain AL541_09440 PF00091 Tubulin/FtsZ family, GTPase domain AL541_09445 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL541_09455 PF07516 SecA Wing and Scaffold domain AL541_09455 PF02810 SEC-C motif AL541_09455 PF01043 SecA preprotein cross-linking domain AL541_09455 PF07517 SecA DEAD-like domain AL541_09460 PF00293 NUDIX domain AL541_09465 PF05173 Dihydrodipicolinate reductase, C-terminus AL541_09465 PF01113 Dihydrodipicolinate reductase, N-terminus AL541_09470 PF00117 Glutamine amidotransferase class-I AL541_09470 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL541_09475 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL541_09475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL541_09475 PF02142 MGS-like domain AL541_09490 PF01925 Sulfite exporter TauE/SafE AL541_09495 PF03466 LysR substrate binding domain AL541_09495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_09500 PF03458 UPF0126 domain AL541_09505 PF01497 Periplasmic binding protein AL541_09510 PF03186 CobD/Cbib protein AL541_09510 PF17113 Regulatory signalling modulator protein AmpE AL541_09515 PF01048 Phosphorylase superfamily AL541_09525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_09525 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL541_09530 PF00310 Glutamine amidotransferases class-II AL541_09530 PF04898 Glutamate synthase central domain AL541_09530 PF01645 Conserved region in glutamate synthase AL541_09530 PF01493 GXGXG motif AL541_09535 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_09535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL541_09540 PF01493 GXGXG motif AL541_09540 PF04898 Glutamate synthase central domain AL541_09540 PF00310 Glutamine amidotransferases class-II AL541_09540 PF01645 Conserved region in glutamate synthase AL541_09545 PF16199 Radical_SAM C-terminal domain AL541_09545 PF04055 Radical SAM superfamily AL541_09550 PF00563 EAL domain AL541_09550 PF01590 GAF domain AL541_09550 PF00990 Diguanylate cyclase, GGDEF domain AL541_09550 PF00360 Phytochrome region AL541_09555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_09555 PF00072 Response regulator receiver domain AL541_09555 PF01627 Hpt domain AL541_09555 PF00512 His Kinase A (phospho-acceptor) domain AL541_09555 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL541_09555 PF00989 PAS fold AL541_09565 PF00072 Response regulator receiver domain AL541_09565 PF00486 Transcriptional regulatory protein, C terminal AL541_09580 PF03737 Aldolase/RraA AL541_09595 PF01842 ACT domain AL541_09595 PF13840 ACT domain AL541_09595 PF00742 Homoserine dehydrogenase AL541_09595 PF03447 Homoserine dehydrogenase, NAD binding domain AL541_09595 PF00696 Amino acid kinase family AL541_09600 PF00288 GHMP kinases N terminal domain AL541_09600 PF08544 GHMP kinases C terminal AL541_09605 PF00291 Pyridoxal-phosphate dependent enzyme AL541_09605 PF14821 Threonine synthase N terminus AL541_09615 PF01228 Glycine radical AL541_09620 PF01261 Xylose isomerase-like TIM barrel AL541_09630 PF03167 Uracil DNA glycosylase superfamily AL541_09645 PF01235 Sodium:alanine symporter family AL541_09650 PF03883 Peroxide stress protein YaaA AL541_09655 PF00271 Helicase conserved C-terminal domain AL541_09655 PF00270 DEAD/DEAH box helicase AL541_09660 PF05175 Methyltransferase small domain AL541_09665 PF05525 Branched-chain amino acid transport protein AL541_09670 PF00258 Flavodoxin AL541_09675 PF02899 Phage integrase, N-terminal SAM-like domain AL541_09675 PF00589 Phage integrase family AL541_09680 PF10411 Disulfide bond isomerase protein N-terminus AL541_09680 PF13098 Thioredoxin-like domain AL541_09685 PF17768 RecJ OB domain AL541_09685 PF02272 DHHA1 domain AL541_09685 PF01368 DHH family AL541_09695 PF00152 tRNA synthetases class II (D, K and N) AL541_09695 PF01336 OB-fold nucleic acid binding domain AL541_09700 PF00072 Response regulator receiver domain AL541_09700 PF02954 Bacterial regulatory protein, Fis family AL541_09700 PF00158 Sigma-54 interaction domain AL541_09710 PF00248 Aldo/keto reductase family AL541_09720 PF02976 DNA mismatch repair enzyme MutH AL541_09725 PF00293 NUDIX domain AL541_09730 PF05524 PEP-utilising enzyme, N-terminal AL541_09730 PF00391 PEP-utilising enzyme, mobile domain AL541_09730 PF01590 GAF domain AL541_09730 PF02896 PEP-utilising enzyme, TIM barrel domain AL541_09735 PF01925 Sulfite exporter TauE/SafE AL541_09745 PF00303 Thymidylate synthase AL541_09755 PF02690 Na+/Pi-cotransporter AL541_09760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_09760 PF03466 LysR substrate binding domain AL541_09765 PF01022 Bacterial regulatory protein, arsR family AL541_09770 PF01649 Ribosomal protein S20 AL541_09775 PF03023 Lipid II flippase MurJ AL541_09780 PF06574 FAD synthetase AL541_09780 PF01687 Riboflavin kinase AL541_09785 PF08264 Anticodon-binding domain of tRNA AL541_09785 PF06827 Zinc finger found in FPG and IleRS AL541_09785 PF00133 tRNA synthetases class I (I, L, M and V) AL541_09790 PF01252 Signal peptidase (SPase) II AL541_09795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_09800 PF02401 LytB protein AL541_09810 PF04397 LytTr DNA-binding domain AL541_09810 PF00072 Response regulator receiver domain AL541_09815 PF06580 Histidine kinase AL541_09815 PF07694 5TMR of 5TMR-LYT AL541_09820 PF02554 Carbon starvation protein CstA AL541_09835 PF01380 SIS domain AL541_09840 PF03702 Anhydro-N-acetylmuramic acid kinase AL541_09845 PF00933 Glycosyl hydrolase family 3 N terminal domain AL541_09850 PF00793 DAHP synthetase I family AL541_09855 PF02153 Prephenate dehydrogenase AL541_09855 PF01817 Chorismate mutase type II AL541_09860 PF04225 Opacity-associated protein A LysM-like domain AL541_09860 PF01551 Peptidase family M23 AL541_09865 PF07238 PilZ domain AL541_09870 PF00005 ABC transporter AL541_09870 PF12848 ABC transporter AL541_09875 PF14718 Soluble lytic murein transglycosylase L domain AL541_09875 PF01464 Transglycosylase SLT domain AL541_09880 PF01371 Trp repressor protein AL541_09885 PF01931 Protein of unknown function DUF84 AL541_09890 PF00800 Prephenate dehydratase AL541_09890 PF01817 Chorismate mutase type II AL541_09895 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL541_09900 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_09900 PF01464 Transglycosylase SLT domain AL541_09905 PF13525 Outer membrane lipoprotein AL541_09910 PF00849 RNA pseudouridylate synthase AL541_09910 PF01479 S4 domain AL541_09920 PF02861 Clp amino terminal domain, pathogenicity island component AL541_09920 PF17871 AAA lid domain AL541_09920 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_09920 PF07724 AAA domain (Cdc48 subfamily) AL541_09920 PF00004 ATPase family associated with various cellular activities (AAA) AL541_09970 PF03411 Penicillin-insensitive murein endopeptidase AL541_09985 PF00037 4Fe-4S binding domain AL541_09995 PF04381 Putative exonuclease, RdgC AL541_10005 PF00486 Transcriptional regulatory protein, C terminal AL541_10005 PF00072 Response regulator receiver domain AL541_10010 PF00989 PAS fold AL541_10010 PF11808 Phosphate regulon sensor protein PhoR AL541_10010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_10010 PF00512 His Kinase A (phospho-acceptor) domain AL541_10015 PF12849 PBP superfamily domain AL541_10020 PF02541 Ppx/GppA phosphatase family AL541_10025 PF13090 Polyphosphate kinase C-terminal domain 2 AL541_10025 PF17941 Polyphosphate kinase C-terminal domain 1 AL541_10025 PF13089 Polyphosphate kinase N-terminal domain AL541_10025 PF02503 Polyphosphate kinase middle domain AL541_10030 PF00528 Binding-protein-dependent transport system inner membrane component AL541_10035 PF00528 Binding-protein-dependent transport system inner membrane component AL541_10040 PF00005 ABC transporter AL541_10045 PF01895 PhoU domain AL541_10050 PF03976 Polyphosphate kinase 2 (PPK2) AL541_10055 PF03932 CutC family AL541_10060 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL541_10060 PF00578 AhpC/TSA family AL541_10065 PF03466 LysR substrate binding domain AL541_10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_10070 PF01274 Malate synthase AL541_10075 PF00463 Isocitrate lyase family AL541_10080 PF00571 CBS domain AL541_10090 PF02547 Queuosine biosynthesis protein AL541_10095 PF01702 Queuine tRNA-ribosyltransferase AL541_10100 PF02699 Preprotein translocase subunit AL541_10105 PF07549 SecD/SecF GG Motif AL541_10105 PF13721 SecD export protein N-terminal TM region AL541_10105 PF02355 Protein export membrane protein AL541_10110 PF07549 SecD/SecF GG Motif AL541_10110 PF02355 Protein export membrane protein AL541_10125 PF00459 Inositol monophosphatase family AL541_10130 PF00588 SpoU rRNA Methylase family AL541_10135 PF02082 Transcriptional regulator AL541_10140 PF00266 Aminotransferase class-V AL541_10145 PF01592 NifU-like N terminal domain AL541_10150 PF01521 Iron-sulphur cluster biosynthesis AL541_10155 PF00226 DnaJ domain AL541_10155 PF07743 HSCB C-terminal oligomerisation domain AL541_10160 PF00012 Hsp70 protein AL541_10165 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_10170 PF04384 Iron-sulphur cluster assembly AL541_10175 PF12404 Peptidase AL541_10175 PF00883 Cytosol aminopeptidase family, catalytic domain AL541_10180 PF00334 Nucleoside diphosphate kinase AL541_10185 PF04055 Radical SAM superfamily AL541_10190 PF13464 Domain of unknown function (DUF4115) AL541_10195 PF04551 GcpE protein AL541_10200 PF03129 Anticodon binding domain AL541_10200 PF13393 Histidyl-tRNA synthetase AL541_10205 PF09976 Tetratricopeptide repeat-like domain AL541_10210 PF13360 PQQ-like domain AL541_10215 PF01926 50S ribosome-binding GTPase AL541_10215 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL541_10230 PF13742 OB-fold nucleic acid binding domain AL541_10230 PF02601 Exonuclease VII, large subunit AL541_10235 PF00571 CBS domain AL541_10235 PF00478 IMP dehydrogenase / GMP reductase domain AL541_10240 PF00958 GMP synthase C terminal domain AL541_10240 PF00117 Glutamine amidotransferase class-I AL541_10240 PF02540 NAD synthase AL541_10245 PF03553 Na+/H+ antiporter family AL541_10250 PF00704 Glycosyl hydrolases family 18 AL541_10250 PF06483 Chitinase C AL541_10255 PF01184 GPR1/FUN34/yaaH family AL541_10260 PF01235 Sodium:alanine symporter family AL541_10265 PF01266 FAD dependent oxidoreductase AL541_10275 PF01053 Cys/Met metabolism PLP-dependent enzyme AL541_10280 PF00202 Aminotransferase class-III AL541_10300 PF00795 Carbon-nitrogen hydrolase AL541_10300 PF00583 Acetyltransferase (GNAT) family AL541_10305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_10305 PF03466 LysR substrate binding domain AL541_10330 PF01668 SmpB protein AL541_10335 PF03364 Polyketide cyclase / dehydrase and lipid transport AL541_10340 PF03658 RnfH family Ubiquitin AL541_10345 PF04355 SmpA / OmlA family AL541_10355 PF02463 RecF/RecN/SMC N terminal domain AL541_10365 PF01513 ATP-NAD kinase AL541_10370 PF01025 GrpE AL541_10375 PF00375 Sodium:dicarboxylate symporter family AL541_10380 PF00012 Hsp70 protein AL541_10385 PF00226 DnaJ domain AL541_10385 PF01556 DnaJ C terminal domain AL541_10385 PF00684 DnaJ central domain AL541_10395 PF07963 Prokaryotic N-terminal methylation motif AL541_10395 PF00114 Pilin (bacterial filament) AL541_10415 PF03806 AbgT putative transporter family AL541_10420 PF14437 MafB19-like deaminase AL541_10430 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_10430 PF01464 Transglycosylase SLT domain AL541_10435 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL541_10435 PF02769 AIR synthase related protein, C-terminal domain AL541_10435 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL541_10450 PF07715 TonB-dependent Receptor Plug Domain AL541_10450 PF00593 TonB dependent receptor AL541_10465 PF07687 Peptidase dimerisation domain AL541_10465 PF01546 Peptidase family M20/M25/M40 AL541_10470 PF00860 Permease family AL541_10475 PF00156 Phosphoribosyl transferase domain AL541_10485 PF07417 Sigma factor-binding transcriptional regulator Crl AL541_10490 PF00696 Amino acid kinase family AL541_10490 PF01472 PUA domain AL541_10495 PF00171 Aldehyde dehydrogenase family AL541_10500 PF03477 ATP cone domain AL541_10505 PF01872 RibD C-terminal domain AL541_10505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_10510 PF00677 Lumazine binding domain AL541_10515 PF00925 GTP cyclohydrolase II AL541_10515 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL541_10520 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL541_10525 PF01029 NusB family AL541_10530 PF02769 AIR synthase related protein, C-terminal domain AL541_10530 PF00586 AIR synthase related protein, N-terminal domain AL541_10535 PF04608 Phosphatidylglycerophosphatase A AL541_10540 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL541_10540 PF02779 Transketolase, pyrimidine binding domain AL541_10540 PF02780 Transketolase, C-terminal domain AL541_10545 PF00348 Polyprenyl synthetase AL541_10550 PF02609 Exonuclease VII small subunit AL541_10555 PF01618 MotA/TolQ/ExbB proton channel family AL541_10560 PF00691 OmpA family AL541_10560 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL541_10565 PF02926 THUMP domain AL541_10565 PF02568 Thiamine biosynthesis protein (ThiI) AL541_10570 PF03466 LysR substrate binding domain AL541_10570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_10580 PF04241 Protein of unknown function (DUF423) AL541_10585 PF18125 RlmM ferredoxin-like domain AL541_10585 PF01728 FtsJ-like methyltransferase AL541_10590 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL541_10590 PF01367 5'-3' exonuclease, C-terminal SAM fold AL541_10595 PF11892 Domain of unknown function (DUF3412) AL541_10595 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL541_10595 PF03641 Possible lysine decarboxylase AL541_10600 PF00072 Response regulator receiver domain AL541_10600 PF00990 Diguanylate cyclase, GGDEF domain AL541_10610 PF14489 QueF-like protein AL541_10610 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL541_10615 PF07348 Syd protein (SUKH-2) AL541_10620 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL541_10625 PF03180 NLPA lipoprotein AL541_10630 PF00528 Binding-protein-dependent transport system inner membrane component AL541_10635 PF00005 ABC transporter AL541_10635 PF09383 NIL domain AL541_10645 PF00356 Bacterial regulatory proteins, lacI family AL541_10650 PF02378 Phosphotransferase system, EIIC AL541_10650 PF00367 phosphotransferase system, EIIB AL541_10655 PF16657 Maltogenic Amylase, C-terminal domain AL541_10655 PF00128 Alpha amylase, catalytic domain AL541_10670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL541_10670 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AL541_10675 PF00464 Serine hydroxymethyltransferase AL541_10680 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL541_10680 PF04055 Radical SAM superfamily AL541_10685 PF03099 Biotin/lipoate A/B protein ligase family AL541_10690 PF04359 Protein of unknown function (DUF493) AL541_10695 PF00768 D-alanyl-D-alanine carboxypeptidase AL541_10695 PF07943 Penicillin-binding protein 5, C-terminal domain AL541_10700 PF03330 Lytic transglycolase AL541_10700 PF05036 Sporulation related domain AL541_10705 PF01098 Cell cycle protein AL541_10710 PF00905 Penicillin binding protein transpeptidase domain AL541_10710 PF03717 Penicillin-binding Protein dimerisation domain AL541_10715 PF02590 Predicted SPOUT methyltransferase AL541_10725 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL541_10725 PF06144 DNA polymerase III, delta subunit AL541_10730 PF04390 Lipopolysaccharide-assembly AL541_10735 PF08264 Anticodon-binding domain of tRNA AL541_10735 PF13603 Leucyl-tRNA synthetase, Domain 2 AL541_10735 PF00133 tRNA synthetases class I (I, L, M and V) AL541_10740 PF07295 Zinc-ribbon containing domain AL541_10745 PF00795 Carbon-nitrogen hydrolase AL541_10750 PF03471 Transporter associated domain AL541_10750 PF00571 CBS domain AL541_10755 PF02130 Uncharacterized protein family UPF0054 AL541_10760 PF02562 PhoH-like protein AL541_10765 PF01938 TRAM domain AL541_10765 PF04055 Radical SAM superfamily AL541_10765 PF00919 Uncharacterized protein family UPF0004 AL541_10775 PF01494 FAD binding domain AL541_10885 PF06071 Protein of unknown function (DUF933) AL541_10885 PF01926 50S ribosome-binding GTPase AL541_10890 PF01195 Peptidyl-tRNA hydrolase AL541_10895 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL541_10895 PF14572 Phosphoribosyl synthetase-associated domain AL541_10900 PF08544 GHMP kinases C terminal AL541_10900 PF00288 GHMP kinases N terminal domain AL541_10905 PF03550 Outer membrane lipoprotein LolB AL541_10910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL541_10910 PF01488 Shikimate / quinate 5-dehydrogenase AL541_10910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL541_10915 PF00472 RF-1 domain AL541_10915 PF03462 PCRF domain AL541_10920 PF17827 PrmC N-terminal domain AL541_10920 PF13847 Methyltransferase domain AL541_10925 PF04247 Invasion gene expression up-regulator, SirB AL541_10930 PF13369 Transglutaminase-like superfamily AL541_10935 PF00793 DAHP synthetase I family AL541_10940 PF00149 Calcineurin-like phosphoesterase AL541_10940 PF02872 5'-nucleotidase, C-terminal domain AL541_10945 PF04073 Aminoacyl-tRNA editing domain AL541_10950 PF01479 S4 domain AL541_10950 PF00849 RNA pseudouridylate synthase AL541_10955 PF01713 Smr domain AL541_10980 PF00728 Glycosyl hydrolase family 20, catalytic domain AL541_10980 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL541_10980 PF02838 Glycosyl hydrolase family 20, domain 2 AL541_10980 PF03173 Putative carbohydrate binding domain AL541_10995 PF00403 Heavy-metal-associated domain AL541_11005 PF13609 Gram-negative porin AL541_11010 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL541_11015 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL541_11020 PF01389 OmpA-like transmembrane domain AL541_11020 PF00691 OmpA family AL541_11065 PF00072 Response regulator receiver domain AL541_11065 PF01584 CheW-like domain AL541_11070 PF01739 CheR methyltransferase, SAM binding domain AL541_11070 PF03705 CheR methyltransferase, all-alpha domain AL541_11075 PF00460 Flagella basal body rod protein AL541_11080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_11080 PF00460 Flagella basal body rod protein AL541_11085 PF13861 FlgD Tudor-like domain AL541_11085 PF03963 Flagellar hook capping protein - N-terminal region AL541_11085 PF13860 FlgD Ig-like domain AL541_11090 PF00460 Flagella basal body rod protein AL541_11090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_11090 PF07559 Flagellar basal body protein FlaE AL541_11095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_11095 PF00460 Flagella basal body rod protein AL541_11100 PF00460 Flagella basal body rod protein AL541_11100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_11105 PF02107 Flagellar L-ring protein AL541_11110 PF02119 Flagellar P-ring protein AL541_11115 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL541_11115 PF10135 Rod binding protein AL541_11120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_11120 PF07196 Flagellin hook IN motif AL541_11125 PF00669 Bacterial flagellin N-terminal helical region AL541_11130 PF00700 Bacterial flagellin C-terminal helical region AL541_11130 PF07196 Flagellin hook IN motif AL541_11130 PF00669 Bacterial flagellin N-terminal helical region AL541_11140 PF00669 Bacterial flagellin N-terminal helical region AL541_11140 PF00700 Bacterial flagellin C-terminal helical region AL541_11140 PF07196 Flagellin hook IN motif AL541_11155 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL541_11160 PF00391 PEP-utilising enzyme, mobile domain AL541_11160 PF02896 PEP-utilising enzyme, TIM barrel domain AL541_11160 PF05524 PEP-utilising enzyme, N-terminal AL541_11165 PF00381 PTS HPr component phosphorylation site AL541_11175 PF00291 Pyridoxal-phosphate dependent enzyme AL541_11185 PF04354 ZipA, C-terminal FtsZ-binding domain AL541_11190 PF00533 BRCA1 C Terminus (BRCT) domain AL541_11190 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL541_11190 PF03120 NAD-dependent DNA ligase OB-fold domain AL541_11190 PF01653 NAD-dependent DNA ligase adenylation domain AL541_11190 PF12826 Helix-hairpin-helix motif AL541_11195 PF03573 outer membrane porin, OprD family AL541_11215 PF01145 SPFH domain / Band 7 family AL541_11215 PF16200 C-terminal region of band_7 AL541_11220 PF00085 Thioredoxin AL541_11230 PF00106 short chain dehydrogenase AL541_11235 PF08338 Domain of unknown function (DUF1731) AL541_11235 PF01370 NAD dependent epimerase/dehydratase family AL541_11240 PF07556 Protein of unknown function (DUF1538) AL541_11245 PF07556 Protein of unknown function (DUF1538) AL541_11265 PF12850 Calcineurin-like phosphoesterase superfamily domain AL541_11280 PF17323 Trans-membrane regulatory protein ToxS AL541_11285 PF00486 Transcriptional regulatory protein, C terminal AL541_11290 PF00183 Hsp90 protein AL541_11290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_11295 PF05191 Adenylate kinase, active site lid AL541_11300 PF00762 Ferrochelatase AL541_11305 PF00854 POT family AL541_11310 PF02357 Transcription termination factor nusG AL541_11315 PF13537 Glutamine amidotransferase domain AL541_11315 PF00733 Asparagine synthase AL541_11320 PF02254 TrkA-N domain AL541_11320 PF00999 Sodium/hydrogen exchanger family AL541_11325 PF00480 ROK family AL541_11325 PF01047 MarR family AL541_11330 PF01979 Amidohydrolase family AL541_11340 PF00367 phosphotransferase system, EIIB AL541_11340 PF02378 Phosphotransferase system, EIIC AL541_11340 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL541_11345 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL541_11345 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL541_11350 PF01475 Ferric uptake regulator family AL541_11360 PF00258 Flavodoxin AL541_11370 PF12697 Alpha/beta hydrolase family AL541_11375 PF17206 SeqA protein N-terminal domain AL541_11375 PF03925 SeqA protein C-terminal domain AL541_11380 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_11380 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_11380 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_11380 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_11390 PF01784 NIF3 (NGG1p interacting factor 3) AL541_11395 PF00285 Citrate synthase, C-terminal domain AL541_11400 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL541_11405 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL541_11410 PF02910 Fumarate reductase flavoprotein C-term AL541_11410 PF00890 FAD binding domain AL541_11415 PF13085 2Fe-2S iron-sulfur cluster binding domain AL541_11420 PF00676 Dehydrogenase E1 component AL541_11420 PF16078 2-oxoglutarate dehydrogenase N-terminus AL541_11420 PF16870 2-oxoglutarate dehydrogenase C-terminal AL541_11420 PF02779 Transketolase, pyrimidine binding domain AL541_11425 PF02817 e3 binding domain AL541_11425 PF00364 Biotin-requiring enzyme AL541_11425 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL541_11430 PF00549 CoA-ligase AL541_11430 PF08442 ATP-grasp domain AL541_11435 PF00549 CoA-ligase AL541_11435 PF02629 CoA binding domain AL541_11440 PF00950 ABC 3 transport family AL541_11445 PF00005 ABC transporter AL541_11450 PF01297 Zinc-uptake complex component A periplasmic AL541_11455 PF12833 Helix-turn-helix domain AL541_11455 PF02311 AraC-like ligand binding domain AL541_11460 PF04023 FeoA domain AL541_11465 PF17910 FeoB cytosolic helical domain AL541_11465 PF02421 Ferrous iron transport protein B AL541_11465 PF07670 Nucleoside recognition AL541_11465 PF07664 Ferrous iron transport protein B C terminus AL541_11485 PF00750 tRNA synthetases class I (R) AL541_11485 PF03485 Arginyl tRNA synthetase N terminal domain AL541_11485 PF05746 DALR anticodon binding domain AL541_11495 PF06185 YecM protein AL541_11500 PF00551 Formyl transferase AL541_11500 PF01842 ACT domain AL541_11505 PF04851 Type III restriction enzyme, res subunit AL541_11505 PF13307 Helicase C-terminal domain AL541_11510 PF00814 Glycoprotease family AL541_11520 PF03843 Outer membrane lipoprotein Slp family AL541_11525 PF00561 alpha/beta hydrolase fold AL541_11530 PF13193 AMP-binding enzyme C-terminal domain AL541_11530 PF00501 AMP-binding enzyme AL541_11535 PF01612 3'-5' exonuclease AL541_11535 PF00570 HRDC domain AL541_11540 PF03776 Septum formation topological specificity factor MinE AL541_11545 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL541_11550 PF05209 Septum formation inhibitor MinC, N-terminal domain AL541_11550 PF03775 Septum formation inhibitor MinC, C-terminal domain AL541_11555 PF05166 YcgL domain AL541_11560 PF13406 Transglycosylase SLT domain AL541_11565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_11565 PF03466 LysR substrate binding domain AL541_11570 PF07670 Nucleoside recognition AL541_11570 PF07662 Na+ dependent nucleoside transporter C-terminus AL541_11570 PF01773 Na+ dependent nucleoside transporter N-terminus AL541_11575 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL541_11575 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL541_11585 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_11585 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_11595 PF07977 FabA-like domain AL541_11600 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_11600 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_11625 PF00221 Aromatic amino acid lyase AL541_11630 PF00535 Glycosyl transferase family 2 AL541_11635 PF07977 FabA-like domain AL541_11650 PF00550 Phosphopantetheine attachment site AL541_11655 PF00550 Phosphopantetheine attachment site AL541_11680 PF04820 Tryptophan halogenase AL541_11690 PF00271 Helicase conserved C-terminal domain AL541_11690 PF00270 DEAD/DEAH box helicase AL541_11695 PF02080 TrkA-C domain AL541_11695 PF02254 TrkA-N domain AL541_11700 PF02386 Cation transport protein AL541_11715 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL541_11720 PF03480 Bacterial extracellular solute-binding protein, family 7 AL541_11725 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL541_11730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL541_11740 PF00158 Sigma-54 interaction domain AL541_11740 PF00072 Response regulator receiver domain AL541_11740 PF02954 Bacterial regulatory protein, Fis family AL541_11745 PF00512 His Kinase A (phospho-acceptor) domain AL541_11745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_11745 PF02743 Cache domain AL541_11755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_11755 PF05698 Bacterial trigger factor protein (TF) C-terminus AL541_11755 PF05697 Bacterial trigger factor protein (TF) AL541_11760 PF00574 Clp protease AL541_11765 PF07724 AAA domain (Cdc48 subfamily) AL541_11765 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_11765 PF06689 ClpX C4-type zinc finger AL541_11770 PF00004 ATPase family associated with various cellular activities (AAA) AL541_11770 PF05362 Lon protease (S16) C-terminal proteolytic domain AL541_11770 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL541_11775 PF00216 Bacterial DNA-binding protein AL541_11780 PF13145 PPIC-type PPIASE domain AL541_11800 PF13286 Phosphohydrolase-associated domain AL541_11800 PF01966 HD domain AL541_11810 PF00155 Aminotransferase class I and II AL541_11815 PF00425 chorismate binding enzyme AL541_11820 PF16582 Middle domain of thiamine pyrophosphate AL541_11820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL541_11820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL541_11825 PF12697 Alpha/beta hydrolase family AL541_11830 PF00378 Enoyl-CoA hydratase/isomerase AL541_11835 PF13378 Enolase C-terminal domain-like AL541_11840 PF00501 AMP-binding enzyme AL541_11840 PF13193 AMP-binding enzyme C-terminal domain AL541_11850 PF03601 Conserved hypothetical protein 698 AL541_11855 PF07690 Major Facilitator Superfamily AL541_11900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_11900 PF00529 HlyD membrane-fusion protein of T1SS AL541_11905 PF00873 AcrB/AcrD/AcrF family AL541_11920 PF00291 Pyridoxal-phosphate dependent enzyme AL541_11925 PF01037 Lrp/AsnC ligand binding domain AL541_11925 PF13404 AsnC-type helix-turn-helix domain AL541_11940 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL541_11945 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL541_11955 PF00990 Diguanylate cyclase, GGDEF domain AL541_11955 PF08448 PAS fold AL541_11965 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL541_11965 PF00588 SpoU rRNA Methylase family AL541_11970 PF00478 IMP dehydrogenase / GMP reductase domain AL541_11970 PF00571 CBS domain AL541_11975 PF00403 Heavy-metal-associated domain AL541_11980 PF01048 Phosphorylase superfamily AL541_11990 PF00672 HAMP domain AL541_11990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_11995 PF01230 HIT domain AL541_12010 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL541_12010 PF13036 Peptidoglycan-synthase activator LpoB AL541_12015 PF01636 Phosphotransferase enzyme family AL541_12020 PF05728 Uncharacterised protein family (UPF0227) AL541_12025 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_12040 PF00270 DEAD/DEAH box helicase AL541_12040 PF00271 Helicase conserved C-terminal domain AL541_12040 PF03461 TRCF domain AL541_12040 PF02559 CarD-like/TRCF domain AL541_12040 PF17757 UvrB interaction domain AL541_12050 PF12704 MacB-like periplasmic core domain AL541_12050 PF02687 FtsX-like permease family AL541_12055 PF00005 ABC transporter AL541_12060 PF12704 MacB-like periplasmic core domain AL541_12060 PF02687 FtsX-like permease family AL541_12070 PF00753 Metallo-beta-lactamase superfamily AL541_12070 PF13567 Domain of unknown function (DUF4131) AL541_12070 PF03772 Competence protein AL541_12080 PF00005 ABC transporter AL541_12080 PF00664 ABC transporter transmembrane region AL541_12085 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL541_12090 PF03966 Trm112p-like protein AL541_12095 PF02348 Cytidylyltransferase AL541_12100 PF04293 SpoVR like protein AL541_12105 PF04285 Protein of unknown function (DUF444) AL541_12110 PF06798 PrkA serine protein kinase C-terminal domain AL541_12110 PF08298 PrkA AAA domain AL541_12120 PF03887 YfbU domain AL541_12130 PF04055 Radical SAM superfamily AL541_12140 PF01228 Glycine radical AL541_12140 PF02901 Pyruvate formate lyase-like AL541_12160 PF00005 ABC transporter AL541_12165 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_12170 PF00528 Binding-protein-dependent transport system inner membrane component AL541_12175 PF00528 Binding-protein-dependent transport system inner membrane component AL541_12185 PF03372 Endonuclease/Exonuclease/phosphatase family AL541_12190 PF10689 Protein of unknown function (DUF2496) AL541_12195 PF07445 Primosomal replication protein priC AL541_12200 PF01925 Sulfite exporter TauE/SafE AL541_12205 PF06733 DEAD_2 AL541_12205 PF13307 Helicase C-terminal domain AL541_12215 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL541_12220 PF00849 RNA pseudouridylate synthase AL541_12225 PF03971 Monomeric isocitrate dehydrogenase AL541_12230 PF00313 'Cold-shock' DNA-binding domain AL541_12235 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL541_12240 PF00004 ATPase family associated with various cellular activities (AAA) AL541_12240 PF07724 AAA domain (Cdc48 subfamily) AL541_12240 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_12240 PF02861 Clp amino terminal domain, pathogenicity island component AL541_12240 PF17871 AAA lid domain AL541_12245 PF01176 Translation initiation factor 1A / IF-1 AL541_12250 PF04377 Arginine-tRNA-protein transferase, C terminus AL541_12250 PF04376 Arginine-tRNA-protein transferase, N terminus AL541_12255 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL541_12265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL541_12270 PF10692 Protein of unknown function (DUF2498) AL541_12275 PF01396 Topoisomerase DNA binding C4 zinc finger AL541_12275 PF01131 DNA topoisomerase AL541_12275 PF08272 Topoisomerase I zinc-ribbon-like AL541_12275 PF01751 Toprim domain AL541_12280 PF00483 Nucleotidyl transferase AL541_12285 PF08323 Starch synthase catalytic domain AL541_12285 PF00534 Glycosyl transferases group 1 AL541_12305 PF04994 TfoX C-terminal domain AL541_12305 PF04993 TfoX N-terminal domain AL541_12310 PF00356 Bacterial regulatory proteins, lacI family AL541_12315 PF02613 Nitrate reductase delta subunit AL541_12320 PF00486 Transcriptional regulatory protein, C terminal AL541_12320 PF00072 Response regulator receiver domain AL541_12325 PF02698 DUF218 domain AL541_12335 PF17192 MukF middle domain AL541_12335 PF03882 MukF winged-helix domain AL541_12335 PF17193 MukF C-terminal domain AL541_12340 PF04288 MukE-like family AL541_12345 PF16330 MukB hinge domain AL541_12345 PF04310 MukB N-terminal AL541_12365 PF18030 RimK PreATP-grasp domain AL541_12365 PF08443 RimK-like ATP-grasp domain AL541_12375 PF08003 Protein of unknown function (DUF1698) AL541_12380 PF13649 Methyltransferase domain AL541_12385 PF01904 Protein of unknown function DUF72 AL541_12390 PF00152 tRNA synthetases class II (D, K and N) AL541_12390 PF01336 OB-fold nucleic acid binding domain AL541_12390 PF02938 GAD domain AL541_12395 PF01709 Transcriptional regulator AL541_12400 PF02075 Crossover junction endodeoxyribonuclease RuvC AL541_12405 PF01330 RuvA N terminal domain AL541_12405 PF07499 RuvA, C-terminal domain AL541_12410 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL541_12410 PF17864 RuvB AAA lid domain AL541_12410 PF05491 RuvB C-terminal winged helix domain AL541_12415 PF01654 Cytochrome bd terminal oxidase subunit I AL541_12420 PF02322 Cytochrome bd terminal oxidase subunit II AL541_12425 PF08173 Membrane bound YbgT-like protein AL541_12435 PF03061 Thioesterase superfamily AL541_12440 PF01618 MotA/TolQ/ExbB proton channel family AL541_12445 PF02472 Biopolymer transport protein ExbD/TolR AL541_12455 PF04052 TolB amino-terminal domain AL541_12455 PF07676 WD40-like Beta Propeller Repeat AL541_12460 PF00691 OmpA family AL541_12465 PF13174 Tetratricopeptide repeat AL541_12465 PF16331 TolA binding protein trimerisation AL541_12470 PF02445 Quinolinate synthetase A protein AL541_12480 PF03994 Domain of Unknown Function (DUF350) AL541_12490 PF03738 Glutathionylspermidine synthase preATP-grasp AL541_12500 PF09308 LuxQ, periplasmic AL541_12500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_12500 PF00072 Response regulator receiver domain AL541_12500 PF00512 His Kinase A (phospho-acceptor) domain AL541_12505 PF06610 L-alanine exporter AL541_12515 PF02322 Cytochrome bd terminal oxidase subunit II AL541_12520 PF01654 Cytochrome bd terminal oxidase subunit I AL541_12535 PF00672 HAMP domain AL541_12535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_12535 PF17200 Single Cache domain 2 AL541_12540 PF00529 HlyD membrane-fusion protein of T1SS AL541_12540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_12545 PF00873 AcrB/AcrD/AcrF family AL541_12560 PF00579 tRNA synthetases class I (W and Y) AL541_12570 PF03372 Endonuclease/Exonuclease/phosphatase family AL541_12580 PF00672 HAMP domain AL541_12580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_12585 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL541_12595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_12595 PF03466 LysR substrate binding domain AL541_12605 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL541_12605 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL541_12610 PF01037 Lrp/AsnC ligand binding domain AL541_12615 PF01580 FtsK/SpoIIIE family AL541_12615 PF17854 FtsK alpha domain AL541_12615 PF09397 Ftsk gamma domain AL541_12615 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL541_12620 PF03548 Outer membrane lipoprotein carrier protein LolA AL541_12625 PF12002 MgsA AAA+ ATPase C terminal AL541_12625 PF16193 AAA C-terminal domain AL541_12625 PF00004 ATPase family associated with various cellular activities (AAA) AL541_12630 PF02403 Seryl-tRNA synthetase N-terminal domain AL541_12630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL541_12645 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL541_12655 PF04055 Radical SAM superfamily AL541_12655 PF06968 Biotin and Thiamin Synthesis associated domain AL541_12660 PF00155 Aminotransferase class I and II AL541_12665 PF08241 Methyltransferase domain AL541_12680 PF01435 Peptidase family M48 AL541_12690 PF00106 short chain dehydrogenase AL541_12715 PF16036 Chalcone isomerase-like AL541_12725 PF08328 Adenylosuccinate lyase C-terminal AL541_12725 PF00206 Lyase AL541_12730 PF04356 Protein of unknown function (DUF489) AL541_12745 PF00294 pfkB family carbohydrate kinase AL541_12750 PF00816 H-NS histone family AL541_12755 PF03553 Na+/H+ antiporter family AL541_12760 PF08029 HisG, C-terminal domain AL541_12760 PF01634 ATP phosphoribosyltransferase AL541_12765 PF00815 Histidinol dehydrogenase AL541_12770 PF00155 Aminotransferase class I and II AL541_12775 PF00475 Imidazoleglycerol-phosphate dehydratase AL541_12775 PF08645 Polynucleotide kinase 3 phosphatase AL541_12780 PF00117 Glutamine amidotransferase class-I AL541_12785 PF00977 Histidine biosynthesis protein AL541_12790 PF00977 Histidine biosynthesis protein AL541_12795 PF01502 Phosphoribosyl-AMP cyclohydrolase AL541_12795 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL541_12800 PF02810 SEC-C motif AL541_12805 PF08668 HDOD domain AL541_12805 PF00563 EAL domain AL541_12810 PF00149 Calcineurin-like phosphoesterase AL541_12815 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL541_12820 PF01406 tRNA synthetases class I (C) catalytic domain AL541_12820 PF09190 DALR domain AL541_12825 PF00265 Thymidine kinase AL541_12830 PF02698 DUF218 domain AL541_12855 PF01226 Formate/nitrite transporter AL541_12865 PF03649 Uncharacterised protein family (UPF0014) AL541_12870 PF06796 Periplasmic nitrate reductase protein NapE AL541_12875 PF03264 NapC/NirT cytochrome c family, N-terminal region AL541_12880 PF18364 Molybdopterin oxidoreductase N-terminal domain AL541_12880 PF01568 Molydopterin dinucleotide binding domain AL541_12880 PF00384 Molybdopterin oxidoreductase AL541_12885 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL541_12885 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL541_12895 PF02833 DHHA2 domain AL541_12895 PF01368 DHH family AL541_12905 PF00005 ABC transporter AL541_12910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_12910 PF00005 ABC transporter AL541_12915 PF00528 Binding-protein-dependent transport system inner membrane component AL541_12915 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_12920 PF00528 Binding-protein-dependent transport system inner membrane component AL541_12925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_12930 PF02954 Bacterial regulatory protein, Fis family AL541_12930 PF00158 Sigma-54 interaction domain AL541_12935 PF04012 PspA/IM30 family AL541_12940 PF06667 Phage shock protein B AL541_12945 PF04024 PspC domain AL541_12955 PF13533 Biotin-lipoyl like AL541_12960 PF00873 AcrB/AcrD/AcrF family AL541_12965 PF03352 Methyladenine glycosylase AL541_12970 PF03280 Proteobacterial lipase chaperone protein AL541_12975 PF00561 alpha/beta hydrolase fold AL541_12980 PF01053 Cys/Met metabolism PLP-dependent enzyme AL541_12985 PF13396 Phospholipase_D-nuclease N-terminal AL541_12985 PF13091 PLD-like domain AL541_12990 PF00209 Sodium:neurotransmitter symporter family AL541_12995 PF00849 RNA pseudouridylate synthase AL541_13005 PF00175 Oxidoreductase NAD-binding domain AL541_13005 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_13005 PF00970 Oxidoreductase FAD-binding domain AL541_13010 PF03063 Prismane/CO dehydrogenase family AL541_13015 PF01590 GAF domain AL541_13015 PF00158 Sigma-54 interaction domain AL541_13030 PF01066 CDP-alcohol phosphatidyltransferase AL541_13035 PF00005 ABC transporter AL541_13040 PF00528 Binding-protein-dependent transport system inner membrane component AL541_13045 PF13416 Bacterial extracellular solute-binding protein AL541_13055 PF06945 Protein of unknown function (DUF1289) AL541_13070 PF02872 5'-nucleotidase, C-terminal domain AL541_13070 PF00149 Calcineurin-like phosphoesterase AL541_13080 PF01386 Ribosomal L25p family AL541_13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_13085 PF00512 His Kinase A (phospho-acceptor) domain AL541_13085 PF00672 HAMP domain AL541_13090 PF00072 Response regulator receiver domain AL541_13090 PF00486 Transcriptional regulatory protein, C terminal AL541_13100 PF04851 Type III restriction enzyme, res subunit AL541_13100 PF00271 Helicase conserved C-terminal domain AL541_13105 PF01479 S4 domain AL541_13105 PF00849 RNA pseudouridylate synthase AL541_13115 PF07690 Major Facilitator Superfamily AL541_13125 PF11066 Protein of unknown function (DUF2867) AL541_13125 PF13460 NAD(P)H-binding AL541_13130 PF01554 MatE AL541_13135 PF00005 ABC transporter AL541_13150 PF06965 Na+/H+ antiporter 1 AL541_13160 PF00440 Bacterial regulatory proteins, tetR family AL541_13160 PF16295 Tetracyclin repressor-like, C-terminal domain AL541_13165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_13165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_13165 PF09317 Domain of unknown function (DUF1974) AL541_13165 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_13170 PF07055 Enoyl reductase FAD binding domain AL541_13170 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL541_13170 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL541_13175 PF02080 TrkA-C domain AL541_13175 PF06826 Predicted Permease Membrane Region AL541_13180 PF00462 Glutaredoxin AL541_13185 PF00465 Iron-containing alcohol dehydrogenase AL541_13190 PF01380 SIS domain AL541_13190 PF01418 Helix-turn-helix domain, rpiR family AL541_13195 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL541_13205 PF03956 Lysine exporter LysO AL541_13225 PF04994 TfoX C-terminal domain AL541_13225 PF04993 TfoX N-terminal domain AL541_13240 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_13240 PF00512 His Kinase A (phospho-acceptor) domain AL541_13240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_13250 PF00266 Aminotransferase class-V AL541_13255 PF00291 Pyridoxal-phosphate dependent enzyme AL541_13260 PF00005 ABC transporter AL541_13260 PF00664 ABC transporter transmembrane region AL541_13265 PF00664 ABC transporter transmembrane region AL541_13265 PF00005 ABC transporter AL541_13270 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_13280 PF00266 Aminotransferase class-V AL541_13290 PF00990 Diguanylate cyclase, GGDEF domain AL541_13290 PF00072 Response regulator receiver domain AL541_13295 PF00939 Sodium:sulfate symporter transmembrane region AL541_13300 PF02698 DUF218 domain AL541_13305 PF03949 Malic enzyme, NAD binding domain AL541_13305 PF00390 Malic enzyme, N-terminal domain AL541_13310 PF00271 Helicase conserved C-terminal domain AL541_13310 PF11898 Domain of unknown function (DUF3418) AL541_13310 PF04408 Helicase associated domain (HA2) AL541_13310 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL541_13310 PF00270 DEAD/DEAH box helicase AL541_13320 PF01797 Transposase IS200 like AL541_13325 PF09423 PhoD-like phosphatase AL541_13325 PF16655 PhoD-like phosphatase, N-terminal domain AL541_13330 PF01259 SAICAR synthetase AL541_13350 PF00691 OmpA family AL541_13350 PF05736 OprF membrane domain AL541_13365 PF13183 4Fe-4S dicluster domain AL541_13365 PF02913 FAD linked oxidases, C-terminal domain AL541_13365 PF01565 FAD binding domain AL541_13370 PF04191 Phospholipid methyltransferase AL541_13380 PF00221 Aromatic amino acid lyase AL541_13385 PF01175 Urocanase Rossmann-like domain AL541_13385 PF17392 Urocanase C-terminal domain AL541_13385 PF17391 Urocanase N-terminal domain AL541_13390 PF00491 Arginase family AL541_13395 PF01979 Amidohydrolase family AL541_13400 PF07702 UTRA domain AL541_13400 PF00392 Bacterial regulatory proteins, gntR family AL541_13415 PF02824 TGS domain AL541_13415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL541_13415 PF03129 Anticodon binding domain AL541_13415 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL541_13420 PF00707 Translation initiation factor IF-3, C-terminal domain AL541_13420 PF05198 Translation initiation factor IF-3, N-terminal domain AL541_13425 PF01632 Ribosomal protein L35 AL541_13430 PF00453 Ribosomal protein L20 AL541_13435 PF01906 Putative heavy-metal-binding AL541_13470 PF01409 tRNA synthetases class II core domain (F) AL541_13470 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL541_13475 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL541_13475 PF01588 Putative tRNA binding domain AL541_13475 PF03483 B3/4 domain AL541_13475 PF03147 Ferredoxin-fold anticodon binding domain AL541_13475 PF03484 tRNA synthetase B5 domain AL541_13485 PF00216 Bacterial DNA-binding protein AL541_13495 PF05724 Thiopurine S-methyltransferase (TPMT) AL541_13500 PF02222 ATP-grasp domain AL541_13505 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_13505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_13510 PF04172 LrgB-like family AL541_13515 PF03788 LrgA family AL541_13520 PF00929 Exonuclease AL541_13520 PF08411 Exonuclease C-terminal AL541_13530 PF13460 NAD(P)H-binding AL541_13535 PF02277 Phosphoribosyltransferase AL541_13540 PF02654 Cobalamin-5-phosphate synthase AL541_13545 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL541_13560 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL541_13565 PF01032 FecCD transport family AL541_13570 PF00005 ABC transporter AL541_13590 PF03466 LysR substrate binding domain AL541_13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_13600 PF01863 Protein of unknown function DUF45 AL541_13605 PF05971 RNA methyltransferase AL541_13625 PF00392 Bacterial regulatory proteins, gntR family AL541_13630 PF00171 Aldehyde dehydrogenase family AL541_13635 PF05544 Proline racemase AL541_13640 PF01266 FAD dependent oxidoreductase AL541_13640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL541_13650 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL541_13655 PF00701 Dihydrodipicolinate synthetase family AL541_13660 PF00005 ABC transporter AL541_13660 PF08402 TOBE domain AL541_13665 PF00528 Binding-protein-dependent transport system inner membrane component AL541_13670 PF00528 Binding-protein-dependent transport system inner membrane component AL541_13680 PF08453 Peptidase family M9 N-terminal AL541_13680 PF01752 Collagenase AL541_13690 PF00005 ABC transporter AL541_13690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_13695 PF00005 ABC transporter AL541_13695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_13700 PF00528 Binding-protein-dependent transport system inner membrane component AL541_13700 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_13705 PF00528 Binding-protein-dependent transport system inner membrane component AL541_13710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_13715 PF01546 Peptidase family M20/M25/M40 AL541_13715 PF07687 Peptidase dimerisation domain AL541_13720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_13725 PF04209 homogentisate 1,2-dioxygenase AL541_13735 PF02798 Glutathione S-transferase, N-terminal domain AL541_13735 PF14497 Glutathione S-transferase, C-terminal domain AL541_13895 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AL541_13910 PF03553 Na+/H+ antiporter family AL541_13915 PF00120 Glutamine synthetase, catalytic domain AL541_13925 PF07722 Peptidase C26 AL541_13930 PF01381 Helix-turn-helix AL541_13930 PF07883 Cupin domain AL541_13935 PF00171 Aldehyde dehydrogenase family AL541_13940 PF01266 FAD dependent oxidoreductase AL541_13945 PF00795 Carbon-nitrogen hydrolase AL541_13950 PF04371 Porphyromonas-type peptidyl-arginine deiminase AL541_13955 PF00171 Aldehyde dehydrogenase family AL541_13960 PF00202 Aminotransferase class-III AL541_13965 PF12792 CSS motif domain associated with EAL AL541_13965 PF00563 EAL domain AL541_13975 PF01047 MarR family AL541_13980 PF04237 YjbR AL541_14005 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL541_14005 PF00072 Response regulator receiver domain AL541_14005 PF01627 Hpt domain AL541_14005 PF00512 His Kinase A (phospho-acceptor) domain AL541_14005 PF00672 HAMP domain AL541_14005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_14010 PF00563 EAL domain AL541_14010 PF03707 Bacterial signalling protein N terminal repeat AL541_14010 PF00990 Diguanylate cyclase, GGDEF domain AL541_14025 PF04204 Homoserine O-succinyltransferase AL541_14035 PF00893 Small Multidrug Resistance protein AL541_14040 PF03279 Bacterial lipid A biosynthesis acyltransferase AL541_14045 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL541_14080 PF07508 Recombinase AL541_14080 PF13408 Recombinase zinc beta ribbon domain AL541_14080 PF00239 Resolvase, N terminal domain AL541_14120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL541_14120 PF01926 50S ribosome-binding GTPase AL541_14125 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL541_14125 PF01926 50S ribosome-binding GTPase AL541_14135 PF00816 H-NS histone family AL541_14175 PF07510 Protein of unknown function (DUF1524) AL541_14190 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AL541_14215 PF17152 Periplasmic sensor domain AL541_14215 PF00990 Diguanylate cyclase, GGDEF domain AL541_14260 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL541_14265 PF01810 LysE type translocator AL541_14275 PF01235 Sodium:alanine symporter family AL541_14300 PF00884 Sulfatase AL541_14305 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL541_14310 PF00528 Binding-protein-dependent transport system inner membrane component AL541_14315 PF00005 ABC transporter AL541_14315 PF00571 CBS domain AL541_14330 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_14335 PF00583 Acetyltransferase (GNAT) family AL541_14340 PF00202 Aminotransferase class-III AL541_14345 PF06339 Ectoine synthase AL541_14350 PF13840 ACT domain AL541_14350 PF00696 Amino acid kinase family AL541_14355 PF00884 Sulfatase AL541_14365 PF03781 Sulfatase-modifying factor enzyme 1 AL541_14370 PF04055 Radical SAM superfamily AL541_14370 PF13186 Iron-sulfur cluster-binding domain AL541_14385 PF00884 Sulfatase AL541_14390 PF00884 Sulfatase AL541_14410 PF02321 Outer membrane efflux protein AL541_14425 PF08220 DeoR-like helix-turn-helix domain AL541_14425 PF00455 DeoR C terminal sensor domain AL541_14430 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL541_14430 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL541_14435 PF03928 Haem-degrading AL541_14440 PF00072 Response regulator receiver domain AL541_14440 PF00990 Diguanylate cyclase, GGDEF domain AL541_14460 PF00939 Sodium:sulfate symporter transmembrane region AL541_14465 PF00512 His Kinase A (phospho-acceptor) domain AL541_14465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_14470 PF00158 Sigma-54 interaction domain AL541_14470 PF00072 Response regulator receiver domain AL541_14470 PF02954 Bacterial regulatory protein, Fis family AL541_14475 PF03707 Bacterial signalling protein N terminal repeat AL541_14475 PF00563 EAL domain AL541_14475 PF00990 Diguanylate cyclase, GGDEF domain AL541_14480 PF01966 HD domain AL541_14480 PF11871 Domain of unknown function (DUF3391) AL541_14485 PF01810 LysE type translocator AL541_14490 PF11230 Protein of unknown function (DUF3029) AL541_14495 PF04055 Radical SAM superfamily AL541_14505 PF03741 Integral membrane protein TerC family AL541_14515 PF01966 HD domain AL541_14520 PF00465 Iron-containing alcohol dehydrogenase AL541_14525 PF03222 Tryptophan/tyrosine permease family AL541_14530 PF11871 Domain of unknown function (DUF3391) AL541_14530 PF01966 HD domain AL541_14540 PF00005 ABC transporter AL541_14545 PF01497 Periplasmic binding protein AL541_14550 PF01032 FecCD transport family AL541_14555 PF00593 TonB dependent receptor AL541_14555 PF07715 TonB-dependent Receptor Plug Domain AL541_14565 PF00664 ABC transporter transmembrane region AL541_14565 PF00005 ABC transporter AL541_14570 PF00664 ABC transporter transmembrane region AL541_14570 PF00005 ABC transporter AL541_14575 PF08334 Type II secretion system (T2SS), protein G AL541_14575 PF07963 Prokaryotic N-terminal methylation motif AL541_14585 PF03466 LysR substrate binding domain AL541_14585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_14595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL541_14595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL541_14610 PF00012 Hsp70 protein AL541_14615 PF00012 Hsp70 protein AL541_14625 PF00990 Diguanylate cyclase, GGDEF domain AL541_14660 PF02525 Flavodoxin-like fold AL541_14665 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL541_14665 PF11898 Domain of unknown function (DUF3418) AL541_14665 PF00271 Helicase conserved C-terminal domain AL541_14665 PF00270 DEAD/DEAH box helicase AL541_14665 PF04408 Helicase associated domain (HA2) AL541_14680 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_14690 PF02397 Bacterial sugar transferase AL541_14700 PF13439 Glycosyltransferase Family 4 AL541_14700 PF00534 Glycosyl transferases group 1 AL541_14730 PF13439 Glycosyltransferase Family 4 AL541_14730 PF00534 Glycosyl transferases group 1 AL541_14735 PF00534 Glycosyl transferases group 1 AL541_14740 PF00158 Sigma-54 interaction domain AL541_14740 PF00072 Response regulator receiver domain AL541_14740 PF02954 Bacterial regulatory protein, Fis family AL541_14755 PF02563 Polysaccharide biosynthesis/export protein AL541_14755 PF10531 SLBB domain AL541_14765 PF01740 STAS domain AL541_14770 PF01068 ATP dependent DNA ligase domain AL541_14770 PF14743 DNA ligase OB-like domain AL541_14780 PF01554 MatE AL541_14785 PF00677 Lumazine binding domain AL541_14800 PF00072 Response regulator receiver domain AL541_14800 PF01339 CheB methylesterase AL541_14805 PF00990 Diguanylate cyclase, GGDEF domain AL541_14805 PF05230 MASE2 domain AL541_14815 PF00877 NlpC/P60 family AL541_14850 PF00480 ROK family AL541_14860 PF03454 MoeA C-terminal region (domain IV) AL541_14860 PF03453 MoeA N-terminal region (domain I and II) AL541_14860 PF00994 Probable molybdopterin binding domain AL541_14865 PF12804 MobA-like NTP transferase domain AL541_14870 PF00005 ABC transporter AL541_14870 PF08402 TOBE domain AL541_14875 PF00528 Binding-protein-dependent transport system inner membrane component AL541_14880 PF12849 PBP superfamily domain AL541_14885 PF00158 Sigma-54 interaction domain AL541_14885 PF02954 Bacterial regulatory protein, Fis family AL541_14885 PF00072 Response regulator receiver domain AL541_14890 PF00512 His Kinase A (phospho-acceptor) domain AL541_14890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_14900 PF12848 ABC transporter AL541_14900 PF00005 ABC transporter AL541_14905 PF02634 FdhD/NarQ family AL541_14925 PF02613 Nitrate reductase delta subunit AL541_14935 PF01568 Molydopterin dinucleotide binding domain AL541_14935 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_14935 PF00384 Molybdopterin oxidoreductase AL541_14940 PF13247 4Fe-4S dicluster domain AL541_15090 PF00909 Ammonium Transporter Family AL541_15095 PF02146 Sir2 family AL541_15100 PF13416 Bacterial extracellular solute-binding protein AL541_15105 PF13416 Bacterial extracellular solute-binding protein AL541_15110 PF00528 Binding-protein-dependent transport system inner membrane component AL541_15115 PF00528 Binding-protein-dependent transport system inner membrane component AL541_15120 PF08402 TOBE domain AL541_15120 PF00005 ABC transporter AL541_15140 PF01171 PP-loop family AL541_15145 PF00582 Universal stress protein family AL541_15150 PF00027 Cyclic nucleotide-binding domain AL541_15150 PF13545 Crp-like helix-turn-helix domain AL541_15165 PF00403 Heavy-metal-associated domain AL541_15175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL541_15175 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL541_15190 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL541_15205 PF00512 His Kinase A (phospho-acceptor) domain AL541_15205 PF09308 LuxQ, periplasmic AL541_15205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_15205 PF00072 Response regulator receiver domain AL541_15230 PF17414 MatP C-terminal ribbon-helix-helix domain AL541_15230 PF06303 MatP N-terminal domain AL541_15235 PF05362 Lon protease (S16) C-terminal proteolytic domain AL541_15235 PF13654 AAA domain AL541_15240 PF07977 FabA-like domain AL541_15245 PF04957 Ribosome modulation factor AL541_15265 PF01170 Putative RNA methylase family UPF0020 AL541_15265 PF10672 S-adenosylmethionine-dependent methyltransferase AL541_15265 PF02926 THUMP domain AL541_15270 PF07126 Cell-division protein ZapC AL541_15275 PF01180 Dihydroorotate dehydrogenase AL541_15280 PF05088 Bacterial NAD-glutamate dehydrogenase AL541_15290 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL541_15290 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL541_15290 PF01433 Peptidase family M1 domain AL541_15300 PF00595 PDZ domain AL541_15300 PF11818 C-terminal domain of tail specific protease (DUF3340) AL541_15300 PF03572 Peptidase family S41 AL541_15300 PF17804 Tail specific protease N-terminal domain AL541_15305 PF04352 ProQ/FINO family AL541_15305 PF17516 ProQ C-terminal domain AL541_15310 PF13185 GAF domain AL541_15315 PF00005 ABC transporter AL541_15315 PF00664 ABC transporter transmembrane region AL541_15320 PF04403 Paraquat-inducible protein A AL541_15325 PF02470 MlaD protein AL541_15330 PF01189 16S rRNA methyltransferase RsmB/F AL541_15330 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL541_15330 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL541_15350 PF00793 DAHP synthetase I family AL541_15355 PF04461 Protein of unknown function (DUF520) AL541_15360 PF14824 Sirohaem biosynthesis protein central AL541_15360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_15360 PF10414 Sirohaem synthase dimerisation region AL541_15370 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_15375 PF00528 Binding-protein-dependent transport system inner membrane component AL541_15380 PF00528 Binding-protein-dependent transport system inner membrane component AL541_15385 PF00005 ABC transporter AL541_15390 PF01027 Inhibitor of apoptosis-promoting Bax1 AL541_15400 PF04358 DsrC like protein AL541_15405 PF00708 Acylphosphatase AL541_15410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_15410 PF00672 HAMP domain AL541_15410 PF02743 Cache domain AL541_15415 PF17785 PUA-like domain AL541_15415 PF10672 S-adenosylmethionine-dependent methyltransferase AL541_15430 PF00691 OmpA family AL541_15455 PF00691 OmpA family AL541_15455 PF05736 OprF membrane domain AL541_15465 PF13185 GAF domain AL541_15465 PF00990 Diguanylate cyclase, GGDEF domain AL541_15470 PF09339 IclR helix-turn-helix domain AL541_15470 PF01614 Bacterial transcriptional regulator AL541_15480 PF00248 Aldo/keto reductase family AL541_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_15485 PF03466 LysR substrate binding domain AL541_15495 PF03466 LysR substrate binding domain AL541_15495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_15500 PF07690 Major Facilitator Superfamily AL541_15510 PF16197 Ketoacyl-synthetase C-terminal extension AL541_15510 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_15510 PF08240 Alcohol dehydrogenase GroES-like domain AL541_15510 PF00698 Acyl transferase domain AL541_15510 PF00107 Zinc-binding dehydrogenase AL541_15510 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_15510 PF00550 Phosphopantetheine attachment site AL541_15510 PF08659 KR domain AL541_15510 PF14765 Polyketide synthase dehydratase AL541_15515 PF02311 AraC-like ligand binding domain AL541_15515 PF12833 Helix-turn-helix domain AL541_15520 PF00857 Isochorismatase family AL541_15525 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_15535 PF08240 Alcohol dehydrogenase GroES-like domain AL541_15535 PF00107 Zinc-binding dehydrogenase AL541_15540 PF00809 Pterin binding enzyme AL541_15540 PF02310 B12 binding domain AL541_15540 PF02607 B12 binding domain AL541_15540 PF02574 Homocysteine S-methyltransferase AL541_15540 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL541_15545 PF00005 ABC transporter AL541_15550 PF00528 Binding-protein-dependent transport system inner membrane component AL541_15555 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_15565 PF00267 Gram-negative porin AL541_15570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_15570 PF03466 LysR substrate binding domain AL541_15580 PF00873 AcrB/AcrD/AcrF family AL541_15585 PF03466 LysR substrate binding domain AL541_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_15595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_15595 PF03466 LysR substrate binding domain AL541_15600 PF01810 LysE type translocator AL541_15610 PF06508 Queuosine biosynthesis protein QueC AL541_15615 PF04055 Radical SAM superfamily AL541_15630 PF00089 Trypsin AL541_15640 PF16177 Acetyl-coenzyme A synthetase N-terminus AL541_15640 PF13193 AMP-binding enzyme C-terminal domain AL541_15640 PF00501 AMP-binding enzyme AL541_15645 PF04303 PrpF protein AL541_15650 PF00694 Aconitase C-terminal domain AL541_15650 PF00330 Aconitase family (aconitate hydratase) AL541_15655 PF00285 Citrate synthase, C-terminal domain AL541_15685 PF01970 Tripartite tricarboxylate transporter TctA family AL541_15695 PF01925 Sulfite exporter TauE/SafE AL541_15700 PF16868 NMT1-like family AL541_15710 PF05844 YopD protein AL541_15720 PF07720 Tetratricopeptide repeat AL541_15725 PF04792 V antigen (LcrV) protein AL541_15735 PF09621 Type III secretion system regulator (LcrR) AL541_15740 PF00771 FHIPEP family AL541_15760 PF09059 TyeA AL541_15770 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_15770 PF18269 T3SS EscN ATPase C-terminal domain AL541_15770 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL541_15785 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL541_15790 PF00813 FliP family AL541_15795 PF01313 Bacterial export proteins, family 3 AL541_15800 PF01311 Bacterial export proteins, family 1 AL541_15805 PF01312 FlhB HrpN YscU SpaS Family AL541_15810 PF12852 Cupin AL541_15810 PF12833 Helix-turn-helix domain AL541_15840 PF02661 Fic/DOC family AL541_15850 PF02108 Flagellar assembly protein FliH AL541_15860 PF01514 Secretory protein of YscJ/FliF family AL541_15865 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AL541_15875 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AL541_15880 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AL541_15890 PF16693 Inner membrane component of T3SS, periplasmic domain AL541_15890 PF16697 Inner membrane component of T3SS, cytoplasmic domain AL541_15910 PF12833 Helix-turn-helix domain AL541_15930 PF00171 Aldehyde dehydrogenase family AL541_15935 PF00158 Sigma-54 interaction domain AL541_15935 PF02954 Bacterial regulatory protein, Fis family AL541_15935 PF01590 GAF domain AL541_15950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_15950 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL541_15955 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL541_15960 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL541_15960 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL541_15965 PF02311 AraC-like ligand binding domain AL541_15965 PF12833 Helix-turn-helix domain AL541_15970 PF07715 TonB-dependent Receptor Plug Domain AL541_15970 PF00593 TonB dependent receptor AL541_15975 PF00072 Response regulator receiver domain AL541_15975 PF12431 Transcriptional regulator AL541_15980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_15980 PF17203 Single cache domain 3 AL541_15980 PF00989 PAS fold AL541_15980 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL541_15995 PF13533 Biotin-lipoyl like AL541_16010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_16010 PF03466 LysR substrate binding domain AL541_16025 PF08543 Phosphomethylpyrimidine kinase AL541_16030 PF00155 Aminotransferase class I and II AL541_16035 PF06826 Predicted Permease Membrane Region AL541_16035 PF02080 TrkA-C domain AL541_16045 PF13533 Biotin-lipoyl like AL541_16060 PF00135 Carboxylesterase family AL541_16065 PF13091 PLD-like domain AL541_16070 PF17243 POTRA domain TamA domain 1 AL541_16070 PF01103 Surface antigen AL541_16075 PF11008 Protein of unknown function (DUF2846) AL541_16080 PF01810 LysE type translocator AL541_16085 PF01810 LysE type translocator AL541_16090 PF07237 Protein of unknown function (DUF1428) AL541_16110 PF01411 tRNA synthetases class II (A) AL541_16110 PF02272 DHHA1 domain AL541_16110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL541_16115 PF13302 Acetyltransferase (GNAT) domain AL541_16120 PF12464 Maltose acetyltransferase AL541_16120 PF14602 Hexapeptide repeat of succinyl-transferase AL541_16230 PF08274 PhnA Zinc-Ribbon AL541_16230 PF03831 PhnA domain AL541_16325 PF13333 Integrase core domain AL541_16325 PF00665 Integrase core domain AL541_16325 PF13276 HTH-like domain AL541_16340 PF00293 NUDIX domain AL541_16340 PF13344 Haloacid dehalogenase-like hydrolase AL541_16715 PF00857 Isochorismatase family AL541_16845 PF01810 LysE type translocator AL541_16915 PF04229 GrpB protein AL541_17010 PF04480 Protein of unknown function (DUF559) AL541_17025 PF00293 NUDIX domain AL541_17025 PF13344 Haloacid dehalogenase-like hydrolase AL541_17100 PF03544 Gram-negative bacterial TonB protein C-terminal AL541_17185 PF00877 NlpC/P60 family AL541_17215 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL541_17325 PF01648 4'-phosphopantetheinyl transferase superfamily AL541_17325 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AL541_17335 PF00793 DAHP synthetase I family AL541_17345 PF00425 chorismate binding enzyme AL541_17350 PF00501 AMP-binding enzyme AL541_17350 PF13193 AMP-binding enzyme C-terminal domain AL541_17355 PF00857 Isochorismatase family AL541_17355 PF00550 Phosphopantetheine attachment site AL541_17360 PF01497 Periplasmic binding protein AL541_17365 PF05977 Transmembrane secretion effector AL541_17370 PF01032 FecCD transport family AL541_17375 PF01032 FecCD transport family AL541_17380 PF00005 ABC transporter AL541_17385 PF00550 Phosphopantetheine attachment site AL541_17385 PF00501 AMP-binding enzyme AL541_17385 PF13193 AMP-binding enzyme C-terminal domain AL541_17385 PF00668 Condensation domain AL541_17390 PF03621 MbtH-like protein AL541_17395 PF11806 Domain of unknown function (DUF3327) AL541_17395 PF00756 Putative esterase AL541_17400 PF07715 TonB-dependent Receptor Plug Domain AL541_17420 PF13545 Crp-like helix-turn-helix domain AL541_17420 PF00027 Cyclic nucleotide-binding domain AL541_17435 PF01043 SecA preprotein cross-linking domain AL541_17435 PF07517 SecA DEAD-like domain AL541_17435 PF02810 SEC-C motif AL541_17435 PF07516 SecA Wing and Scaffold domain AL541_17510 PF13344 Haloacid dehalogenase-like hydrolase AL541_17510 PF00293 NUDIX domain AL541_17530 PF00857 Isochorismatase family AL541_17765 PF07517 SecA DEAD-like domain AL541_17765 PF01043 SecA preprotein cross-linking domain AL541_17765 PF07516 SecA Wing and Scaffold domain AL541_17765 PF02810 SEC-C motif AL541_17905 PF13495 Phage integrase, N-terminal SAM-like domain AL541_17905 PF00589 Phage integrase family AL541_17920 PF13302 Acetyltransferase (GNAT) domain AL541_17925 PF00158 Sigma-54 interaction domain AL541_17925 PF18024 Helix-turn-helix domain AL541_17930 PF05128 Domain of unknown function (DUF697) AL541_17935 PF04317 YcjX-like family, DUF463 AL541_17955 PF00425 chorismate binding enzyme AL541_17955 PF04715 Anthranilate synthase component I, N terminal region AL541_17960 PF09308 LuxQ, periplasmic AL541_17960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_17960 PF00512 His Kinase A (phospho-acceptor) domain AL541_17960 PF00072 Response regulator receiver domain AL541_17970 PF00293 NUDIX domain AL541_17975 PF03222 Tryptophan/tyrosine permease family AL541_17980 PF03315 Serine dehydratase beta chain AL541_17980 PF03313 Serine dehydratase alpha chain AL541_17985 PF04940 Sensors of blue-light using FAD AL541_17985 PF00563 EAL domain AL541_17995 PF01242 6-pyruvoyl tetrahydropterin synthase AL541_18000 PF17200 Single Cache domain 2 AL541_18000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_18000 PF00672 HAMP domain AL541_18005 PF00152 tRNA synthetases class II (D, K and N) AL541_18005 PF01336 OB-fold nucleic acid binding domain AL541_18015 PF00392 Bacterial regulatory proteins, gntR family AL541_18015 PF00155 Aminotransferase class I and II AL541_18030 PF00155 Aminotransferase class I and II AL541_18050 PF00672 HAMP domain AL541_18050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_18055 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_18065 PF00196 Bacterial regulatory proteins, luxR family AL541_18065 PF00072 Response regulator receiver domain AL541_18070 PF07730 Histidine kinase AL541_18070 PF17200 Single Cache domain 2 AL541_18075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL541_18085 PF03480 Bacterial extracellular solute-binding protein, family 7 AL541_18100 PF00753 Metallo-beta-lactamase superfamily AL541_18105 PF05951 Bacterial protein of unknown function (DUF882) AL541_18110 PF03734 L,D-transpeptidase catalytic domain AL541_18110 PF01471 Putative peptidoglycan binding domain AL541_18135 PF00925 GTP cyclohydrolase II AL541_18145 PF03918 Cytochrome C biogenesis protein AL541_18150 PF08534 Redoxin AL541_18155 PF01578 Cytochrome C assembly protein AL541_18155 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL541_18160 PF03916 Polysulphide reductase, NrfD AL541_18165 PF13247 4Fe-4S dicluster domain AL541_18175 PF02335 Cytochrome c552 AL541_18190 PF00521 DNA gyrase/topoisomerase IV, subunit A AL541_18190 PF03989 DNA gyrase C-terminal domain, beta-propeller AL541_18205 PF03477 ATP cone domain AL541_18205 PF02867 Ribonucleotide reductase, barrel domain AL541_18205 PF00317 Ribonucleotide reductase, all-alpha domain AL541_18210 PF00268 Ribonucleotide reductase, small chain AL541_18220 PF00994 Probable molybdopterin binding domain AL541_18235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL541_18240 PF03435 Saccharopine dehydrogenase NADP binding domain AL541_18240 PF16653 Saccharopine dehydrogenase C-terminal domain AL541_18245 PF00202 Aminotransferase class-III AL541_18270 PF01066 CDP-alcohol phosphatidyltransferase AL541_18275 PF02151 UvrB/uvrC motif AL541_18275 PF08459 UvrC Helix-hairpin-helix N-terminal AL541_18275 PF01541 GIY-YIG catalytic domain AL541_18280 PF00072 Response regulator receiver domain AL541_18280 PF00196 Bacterial regulatory proteins, luxR family AL541_18285 PF03104 DNA polymerase family B, exonuclease domain AL541_18285 PF00136 DNA polymerase family B AL541_18295 PF01132 Elongation factor P (EF-P) OB domain AL541_18295 PF09285 Elongation factor P, C-terminal AL541_18295 PF08207 Elongation factor P (EF-P) KOW-like domain AL541_18300 PF04269 Protein of unknown function, DUF440 AL541_18305 PF01479 S4 domain AL541_18305 PF00849 RNA pseudouridylate synthase AL541_18315 PF01300 Telomere recombination AL541_18320 PF02811 PHP domain AL541_18325 PF08056 Tryptophan operon leader peptide AL541_18330 PF04715 Anthranilate synthase component I, N terminal region AL541_18330 PF00425 chorismate binding enzyme AL541_18335 PF00117 Glutamine amidotransferase class-I AL541_18340 PF00591 Glycosyl transferase family, a/b domain AL541_18340 PF02885 Glycosyl transferase family, helical bundle domain AL541_18345 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL541_18345 PF00218 Indole-3-glycerol phosphate synthase AL541_18350 PF00291 Pyridoxal-phosphate dependent enzyme AL541_18355 PF00290 Tryptophan synthase alpha chain AL541_18360 PF13545 Crp-like helix-turn-helix domain AL541_18360 PF00027 Cyclic nucleotide-binding domain AL541_18365 PF13193 AMP-binding enzyme C-terminal domain AL541_18365 PF00501 AMP-binding enzyme AL541_18375 PF00375 Sodium:dicarboxylate symporter family AL541_18380 PF17327 Acyl homoserine lactone synthase AL541_18385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_18385 PF00072 Response regulator receiver domain AL541_18395 PF04279 Intracellular septation protein A AL541_18400 PF03061 Thioesterase superfamily AL541_18405 PF03795 YCII-related domain AL541_18415 PF01717 Cobalamin-independent synthase, Catalytic domain AL541_18415 PF08267 Cobalamin-independent synthase, N-terminal domain AL541_18420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_18420 PF03466 LysR substrate binding domain AL541_18435 PF08448 PAS fold AL541_18435 PF08447 PAS fold AL541_18435 PF00563 EAL domain AL541_18435 PF00990 Diguanylate cyclase, GGDEF domain AL541_18440 PF08497 Radical SAM N-terminal AL541_18440 PF04055 Radical SAM superfamily AL541_18440 PF11842 Domain of unknown function (DUF3362) AL541_18460 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AL541_18465 PF00535 Glycosyl transferase family 2 AL541_18470 PF00486 Transcriptional regulatory protein, C terminal AL541_18470 PF00072 Response regulator receiver domain AL541_18475 PF00672 HAMP domain AL541_18475 PF00512 His Kinase A (phospho-acceptor) domain AL541_18475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_18495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_18495 PF03466 LysR substrate binding domain AL541_18500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_18500 PF00529 HlyD membrane-fusion protein of T1SS AL541_18510 PF08267 Cobalamin-independent synthase, N-terminal domain AL541_18510 PF01717 Cobalamin-independent synthase, Catalytic domain AL541_18530 PF12704 MacB-like periplasmic core domain AL541_18530 PF02687 FtsX-like permease family AL541_18530 PF00005 ABC transporter AL541_18535 PF02687 FtsX-like permease family AL541_18535 PF00005 ABC transporter AL541_18535 PF12704 MacB-like periplasmic core domain AL541_18540 PF00005 ABC transporter AL541_18540 PF12704 MacB-like periplasmic core domain AL541_18540 PF02687 FtsX-like permease family AL541_18550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_18570 PF00085 Thioredoxin AL541_18575 PF11412 Disulphide bond corrector protein DsbC AL541_18575 PF02683 Cytochrome C biogenesis protein transmembrane region AL541_18585 PF00196 Bacterial regulatory proteins, luxR family AL541_18585 PF00072 Response regulator receiver domain AL541_18590 PF00512 His Kinase A (phospho-acceptor) domain AL541_18590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_18595 PF13247 4Fe-4S dicluster domain AL541_18600 PF03916 Polysulphide reductase, NrfD AL541_18605 PF01568 Molydopterin dinucleotide binding domain AL541_18605 PF00384 Molybdopterin oxidoreductase AL541_18605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_18610 PF00034 Cytochrome c AL541_18615 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL541_18620 PF04403 Paraquat-inducible protein A AL541_18625 PF02470 MlaD protein AL541_18645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_18650 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL541_18655 PF18073 Rubredoxin metal binding domain AL541_18660 PF06305 Lipopolysaccharide assembly protein A domain AL541_18665 PF00216 Bacterial DNA-binding protein AL541_18670 PF00575 S1 RNA binding domain AL541_18675 PF02224 Cytidylate kinase AL541_18680 PF08496 Peptidase family S49 N-terminal AL541_18680 PF01343 Peptidase family S49 AL541_18685 PF00106 short chain dehydrogenase AL541_18700 PF01336 OB-fold nucleic acid binding domain AL541_18700 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL541_18700 PF14579 Helix-hairpin-helix motif AL541_18700 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL541_18700 PF02811 PHP domain AL541_18705 PF00072 Response regulator receiver domain AL541_18705 PF01584 CheW-like domain AL541_18710 PF00480 ROK family AL541_18715 PF00224 Pyruvate kinase, barrel domain AL541_18715 PF02887 Pyruvate kinase, alpha/beta domain AL541_18720 PF01734 Patatin-like phospholipase AL541_18735 PF00209 Sodium:neurotransmitter symporter family AL541_18745 PF02378 Phosphotransferase system, EIIC AL541_18745 PF00367 phosphotransferase system, EIIB AL541_18750 PF01026 TatD related DNase AL541_18755 PF09115 DNA polymerase III, delta subunit, C terminal AL541_18760 PF02223 Thymidylate kinase AL541_18765 PF02618 YceG-like family AL541_18770 PF01063 Amino-transferase class IV AL541_18775 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_18775 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_18780 PF00550 Phosphopantetheine attachment site AL541_18790 PF00698 Acyl transferase domain AL541_18795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL541_18795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL541_18800 PF02504 Fatty acid synthesis protein AL541_18805 PF01783 Ribosomal L32p protein family AL541_18810 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL541_18815 PF02545 Maf-like protein AL541_18820 PF00849 RNA pseudouridylate synthase AL541_18820 PF01479 S4 domain AL541_18830 PF00575 S1 RNA binding domain AL541_18830 PF12111 Polyribonucleotide phosphorylase C terminal AL541_18830 PF10150 Ribonuclease E/G family AL541_18840 PF00916 Sulfate permease family AL541_18840 PF01740 STAS domain AL541_18845 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL541_18850 PF12557 Cob(I)alamin adenosyltransferase N terminal AL541_18850 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL541_18860 PF00485 Phosphoribulokinase / Uridine kinase family AL541_18865 PF10609 NUBPL iron-transfer P-loop NTPase AL541_18870 PF09334 tRNA synthetases class I (M) AL541_18870 PF01588 Putative tRNA binding domain AL541_18890 PF07840 FadR C-terminal domain AL541_18890 PF00392 Bacterial regulatory proteins, gntR family AL541_18895 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL541_18900 PF02600 Disulfide bond formation protein DsbB AL541_18905 PF07517 SecA DEAD-like domain AL541_18905 PF01043 SecA preprotein cross-linking domain AL541_18905 PF07516 SecA Wing and Scaffold domain AL541_18905 PF02810 SEC-C motif AL541_18910 PF01207 Dihydrouridine synthase (Dus) AL541_18915 PF17158 Membrane-associated sensor, integral membrane domain AL541_18915 PF00990 Diguanylate cyclase, GGDEF domain AL541_18920 PF02903 Alpha amylase, N-terminal ig-like domain AL541_18920 PF00128 Alpha amylase, catalytic domain AL541_18925 PF00005 ABC transporter AL541_18930 PF02653 Branched-chain amino acid transport system / permease component AL541_18940 PF04217 Protein of unknown function, DUF412 AL541_18945 PF00871 Acetokinase family AL541_18950 PF01515 Phosphate acetyl/butaryl transferase AL541_18950 PF07085 DRTGG domain AL541_18960 PF13409 Glutathione S-transferase, N-terminal domain AL541_18965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_18965 PF00005 ABC transporter AL541_18970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_18970 PF00005 ABC transporter AL541_18975 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_18975 PF00528 Binding-protein-dependent transport system inner membrane component AL541_18980 PF00528 Binding-protein-dependent transport system inner membrane component AL541_18985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_18990 PF02391 MoaE protein AL541_18995 PF02597 ThiS family AL541_19000 PF01967 MoaC family AL541_19005 PF00994 Probable molybdopterin binding domain AL541_19010 PF06463 Molybdenum Cofactor Synthesis C AL541_19010 PF04055 Radical SAM superfamily AL541_19015 PF01933 Uncharacterised protein family UPF0052 AL541_19020 PF01627 Hpt domain AL541_19025 PF02954 Bacterial regulatory protein, Fis family AL541_19025 PF00158 Sigma-54 interaction domain AL541_19025 PF00072 Response regulator receiver domain AL541_19030 PF02151 UvrB/uvrC motif AL541_19030 PF12344 Ultra-violet resistance protein B AL541_19030 PF17757 UvrB interaction domain AL541_19030 PF00271 Helicase conserved C-terminal domain AL541_19030 PF04851 Type III restriction enzyme, res subunit AL541_19040 PF01228 Glycine radical AL541_19040 PF02901 Pyruvate formate lyase-like AL541_19045 PF02508 Rnf-Nqr subunit, membrane protein AL541_19050 PF04060 Putative Fe-S cluster AL541_19055 PF12838 4Fe-4S dicluster domain AL541_19055 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL541_19055 PF10531 SLBB domain AL541_19055 PF13375 RnfC Barrel sandwich hybrid domain AL541_19060 PF03116 NQR2, RnfD, RnfE family AL541_19065 PF04205 FMN-binding domain AL541_19070 PF02508 Rnf-Nqr subunit, membrane protein AL541_19075 PF00633 Helix-hairpin-helix motif AL541_19075 PF00730 HhH-GPD superfamily base excision DNA repair protein AL541_19075 PF10576 Iron-sulfur binding domain of endonuclease III AL541_19080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_19085 PF10952 Protein of unknown function (DUF2753) AL541_19090 PF18393 MotY N-terminal domain AL541_19090 PF00691 OmpA family AL541_19100 PF00929 Exonuclease AL541_19105 PF03553 Na+/H+ antiporter family AL541_19105 PF13726 Na+-H+ antiporter family AL541_19125 PF00462 Glutaredoxin AL541_19130 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL541_19130 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL541_19150 PF00171 Aldehyde dehydrogenase family AL541_19150 PF00465 Iron-containing alcohol dehydrogenase AL541_19155 PF01914 MarC family integral membrane protein AL541_19160 PF00027 Cyclic nucleotide-binding domain AL541_19160 PF00520 Ion transport protein AL541_19165 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL541_19165 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL541_19170 PF03553 Na+/H+ antiporter family AL541_19185 PF04245 37-kD nucleoid-associated bacterial protein AL541_19190 PF07208 Protein of unknown function (DUF1414) AL541_19195 PF11893 Domain of unknown function (DUF3413) AL541_19195 PF00884 Sulfatase AL541_19205 PF00850 Histone deacetylase domain AL541_19210 PF00106 short chain dehydrogenase AL541_19220 PF01131 DNA topoisomerase AL541_19220 PF01751 Toprim domain AL541_19225 PF00881 Nitroreductase family AL541_19235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_19235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_19240 PF01343 Peptidase family S49 AL541_19245 PF17763 Glutaminase/Asparaginase C-terminal domain AL541_19245 PF00710 Asparaginase, N-terminal AL541_19250 PF07023 Protein of unknown function (DUF1315) AL541_19260 PF01641 SelR domain AL541_19265 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_19265 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL541_19270 PF01263 Aldose 1-epimerase AL541_19275 PF08447 PAS fold AL541_19275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_19275 PF13426 PAS domain AL541_19280 PF13847 Methyltransferase domain AL541_19300 PF00245 Alkaline phosphatase AL541_19310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_19315 PF03992 Antibiotic biosynthesis monooxygenase AL541_19320 PF00924 Mechanosensitive ion channel AL541_19320 PF05552 Conserved TM helix AL541_19325 PF03692 Putative zinc- or iron-chelating domain AL541_19330 PF04226 Transglycosylase associated protein AL541_19335 PF03692 Putative zinc- or iron-chelating domain AL541_19340 PF00230 Major intrinsic protein AL541_19345 PF02132 RecR protein AL541_19345 PF13662 Toprim domain AL541_19350 PF02575 YbaB/EbfC DNA-binding family AL541_19355 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL541_19355 PF12169 DNA polymerase III subunits gamma and tau domain III AL541_19355 PF12170 DNA polymerase III tau subunit V interacting with alpha AL541_19360 PF00156 Phosphoribosyl transferase domain AL541_19365 PF04304 Protein of unknown function (DUF454) AL541_19375 PF00072 Response regulator receiver domain AL541_19380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_19380 PF03466 LysR substrate binding domain AL541_19385 PF00156 Phosphoribosyl transferase domain AL541_19390 PF02674 Colicin V production protein AL541_19395 PF05036 Sporulation related domain AL541_19400 PF08245 Mur ligase middle domain AL541_19400 PF02875 Mur ligase family, glutamate ligase domain AL541_19405 PF01039 Carboxyl transferase domain AL541_19405 PF17848 Acetyl-coA carboxylase zinc finger domain AL541_19415 PF01416 tRNA pseudouridine synthase AL541_19425 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL541_19425 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL541_19430 PF11890 Domain of unknown function (DUF3410) AL541_19430 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL541_19430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_19440 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_19440 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_19445 PF01266 FAD dependent oxidoreductase AL541_19445 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL541_19450 PF03358 NADPH-dependent FMN reductase AL541_19460 PF08891 YfcL protein AL541_19465 PF04315 Elongation factor P hydroxylase AL541_19475 PF03458 UPF0126 domain AL541_19480 PF01264 Chorismate synthase AL541_19485 PF05175 Methyltransferase small domain AL541_19490 PF01713 Smr domain AL541_19495 PF00300 Histidine phosphatase superfamily (branch 1) AL541_19500 PF16187 Middle or third domain of peptidase_M16 AL541_19500 PF00675 Insulinase (Peptidase family M16) AL541_19500 PF05193 Peptidase M16 inactive domain AL541_19510 PF00378 Enoyl-CoA hydratase/isomerase AL541_19510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL541_19510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL541_19515 PF00108 Thiolase, N-terminal domain AL541_19515 PF02803 Thiolase, C-terminal domain AL541_19525 PF08281 Sigma-70, region 4 AL541_19525 PF04542 Sigma-70 region 2 AL541_19535 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_19540 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_19545 PF04333 MlaA lipoprotein AL541_19550 PF03918 Cytochrome C biogenesis protein AL541_19555 PF03918 Cytochrome C biogenesis protein AL541_19560 PF08534 Redoxin AL541_19565 PF01578 Cytochrome C assembly protein AL541_19565 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL541_19570 PF03100 CcmE AL541_19575 PF04995 Heme exporter protein D (CcmD) AL541_19580 PF01578 Cytochrome C assembly protein AL541_19585 PF03379 CcmB protein AL541_19590 PF00005 ABC transporter AL541_19600 PF01584 CheW-like domain AL541_19610 PF13614 AAA domain AL541_19615 PF00072 Response regulator receiver domain AL541_19615 PF01339 CheB methylesterase AL541_19620 PF07194 P2 response regulator binding domain AL541_19620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_19620 PF02895 Signal transducing histidine kinase, homodimeric domain AL541_19620 PF01584 CheW-like domain AL541_19620 PF01627 Hpt domain AL541_19625 PF04344 Chemotaxis phosphatase, CheZ AL541_19630 PF00072 Response regulator receiver domain AL541_19635 PF04539 Sigma-70 region 3 AL541_19635 PF04545 Sigma-70, region 4 AL541_19635 PF04542 Sigma-70 region 2 AL541_19640 PF10609 NUBPL iron-transfer P-loop NTPase AL541_19645 PF00448 SRP54-type protein, GTPase domain AL541_19650 PF00771 FHIPEP family AL541_19655 PF01312 FlhB HrpN YscU SpaS Family AL541_19660 PF01311 Bacterial export proteins, family 1 AL541_19665 PF01313 Bacterial export proteins, family 3 AL541_19670 PF00813 FliP family AL541_19675 PF04347 Flagellar biosynthesis protein, FliO AL541_19680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL541_19685 PF02154 Flagellar motor switch protein FliM AL541_19685 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL541_19710 PF18269 T3SS EscN ATPase C-terminal domain AL541_19710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_19720 PF14841 FliG middle domain AL541_19720 PF14842 FliG N-terminal domain AL541_19720 PF01706 FliG C-terminal domain AL541_19725 PF08345 Flagellar M-ring protein C-terminal AL541_19725 PF01514 Secretory protein of YscJ/FliF family AL541_19730 PF02049 Flagellar hook-basal body complex protein FliE AL541_19735 PF02954 Bacterial regulatory protein, Fis family AL541_19735 PF00072 Response regulator receiver domain AL541_19735 PF00158 Sigma-54 interaction domain AL541_19740 PF00512 His Kinase A (phospho-acceptor) domain AL541_19740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_19745 PF02954 Bacterial regulatory protein, Fis family AL541_19745 PF00072 Response regulator receiver domain AL541_19745 PF00158 Sigma-54 interaction domain AL541_19750 PF02561 Flagellar protein FliS AL541_19760 PF02465 Flagellar hook-associated protein 2 N-terminus AL541_19760 PF07196 Flagellin hook IN motif AL541_19760 PF07195 Flagellar hook-associated protein 2 C-terminus AL541_19765 PF03646 FlaG protein AL541_19770 PF00700 Bacterial flagellin C-terminal helical region AL541_19770 PF07196 Flagellin hook IN motif AL541_19770 PF00669 Bacterial flagellin N-terminal helical region AL541_19775 PF07196 Flagellin hook IN motif AL541_19775 PF00700 Bacterial flagellin C-terminal helical region AL541_19775 PF00669 Bacterial flagellin N-terminal helical region AL541_19785 PF00700 Bacterial flagellin C-terminal helical region AL541_19785 PF07196 Flagellin hook IN motif AL541_19785 PF00669 Bacterial flagellin N-terminal helical region AL541_19790 PF04261 Dyp-type peroxidase family AL541_19795 PF11143 Protein of unknown function (DUF2919) AL541_19815 PF03960 ArsC family AL541_19820 PF07687 Peptidase dimerisation domain AL541_19820 PF01546 Peptidase family M20/M25/M40 AL541_19840 PF00701 Dihydrodipicolinate synthetase family AL541_19850 PF00578 AhpC/TSA family AL541_19855 PF01594 AI-2E family transporter AL541_19865 PF01435 Peptidase family M48 AL541_19865 PF13181 Tetratricopeptide repeat AL541_19870 PF03960 ArsC family AL541_19875 PF03358 NADPH-dependent FMN reductase AL541_19890 PF00860 Permease family AL541_19900 PF02769 AIR synthase related protein, C-terminal domain AL541_19900 PF00586 AIR synthase related protein, N-terminal domain AL541_19905 PF00551 Formyl transferase AL541_19910 PF13230 Glutamine amidotransferases class-II AL541_19915 PF13580 SIS domain AL541_19920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_19920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_19920 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_19920 PF09317 Domain of unknown function (DUF1974) AL541_19925 PF01740 STAS domain AL541_19925 PF00916 Sulfate permease family AL541_19950 PF00929 Exonuclease AL541_19955 PF00075 RNase H AL541_19960 PF08241 Methyltransferase domain AL541_19965 PF00753 Metallo-beta-lactamase superfamily AL541_19965 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL541_19970 PF01464 Transglycosylase SLT domain AL541_19970 PF01476 LysM domain AL541_19980 PF03372 Endonuclease/Exonuclease/phosphatase family AL541_19985 PF00543 Nitrogen regulatory protein P-II AL541_19990 PF00034 Cytochrome c AL541_19995 PF01171 PP-loop family AL541_19995 PF09179 TilS substrate binding domain AL541_19995 PF11734 TilS substrate C-terminal domain AL541_20000 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL541_20005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL541_20005 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL541_20005 PF01336 OB-fold nucleic acid binding domain AL541_20005 PF14579 Helix-hairpin-helix motif AL541_20005 PF02811 PHP domain AL541_20010 PF01351 Ribonuclease HII AL541_20015 PF02684 Lipid-A-disaccharide synthetase AL541_20020 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_20020 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL541_20025 PF07977 FabA-like domain AL541_20030 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL541_20030 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_20035 PF03938 Outer membrane protein (OmpH-like) AL541_20040 PF07244 Surface antigen variable number repeat AL541_20040 PF01103 Surface antigen AL541_20045 PF17820 PDZ domain AL541_20045 PF02163 Peptidase family M50 AL541_20050 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL541_20050 PF13288 DXP reductoisomerase C-terminal domain AL541_20050 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL541_20060 PF01255 Putative undecaprenyl diphosphate synthase AL541_20065 PF01765 Ribosome recycling factor AL541_20070 PF00696 Amino acid kinase family AL541_20075 PF00889 Elongation factor TS AL541_20080 PF00318 Ribosomal protein S2 AL541_20085 PF00557 Metallopeptidase family M24 AL541_20090 PF08335 GlnD PII-uridylyltransferase AL541_20090 PF01909 Nucleotidyltransferase domain AL541_20090 PF01966 HD domain AL541_20090 PF01842 ACT domain AL541_20095 PF11944 Protein of unknown function (DUF3461) AL541_20100 PF00849 RNA pseudouridylate synthase AL541_20105 PF04287 tRNA pseudouridine synthase C AL541_20135 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL541_20140 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL541_20140 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL541_20145 PF01370 NAD dependent epimerase/dehydratase family AL541_20170 PF03806 AbgT putative transporter family AL541_20175 PF00444 Ribosomal protein L36 AL541_20180 PF01197 Ribosomal protein L31 AL541_20185 PF01980 tRNA-methyltransferase O AL541_20185 PF18389 TrmO C-terminal domain AL541_20190 PF04073 Aminoacyl-tRNA editing domain AL541_20190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL541_20190 PF03129 Anticodon binding domain AL541_20200 PF06786 Uncharacterised protein family (UPF0253) AL541_20210 PF00209 Sodium:neurotransmitter symporter family AL541_20215 PF00704 Glycosyl hydrolases family 18 AL541_20215 PF06483 Chitinase C AL541_20225 PF01272 Transcription elongation factor, GreA/GreB, C-term AL541_20225 PF03449 Transcription elongation factor, N-terminal AL541_20230 PF16124 RecQ zinc-binding AL541_20230 PF00270 DEAD/DEAH box helicase AL541_20230 PF00570 HRDC domain AL541_20230 PF00271 Helicase conserved C-terminal domain AL541_20230 PF09382 RQC domain AL541_20235 PF11798 IMS family HHH motif AL541_20235 PF11799 impB/mucB/samB family C-terminal domain AL541_20235 PF00817 impB/mucB/samB family AL541_20245 PF00990 Diguanylate cyclase, GGDEF domain AL541_20245 PF00072 Response regulator receiver domain AL541_20255 PF02424 ApbE family AL541_20260 PF00175 Oxidoreductase NAD-binding domain AL541_20260 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_20260 PF00970 Oxidoreductase FAD-binding domain AL541_20265 PF02508 Rnf-Nqr subunit, membrane protein AL541_20270 PF02508 Rnf-Nqr subunit, membrane protein AL541_20275 PF04205 FMN-binding domain AL541_20280 PF03116 NQR2, RnfD, RnfE family AL541_20285 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL541_20285 PF11973 NQRA C-terminal domain AL541_20295 PF01722 BolA-like protein AL541_20300 PF05175 Methyltransferase small domain AL541_20305 PF03923 Uncharacterized lipoprotein AL541_20305 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL541_20310 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL541_20315 PF07690 Major Facilitator Superfamily AL541_20325 PF04542 Sigma-70 region 2 AL541_20325 PF04545 Sigma-70, region 4 AL541_20345 PF03502 Nucleoside-specific channel-forming protein, Tsx AL541_20350 PF02558 Ketopantoate reductase PanE/ApbA AL541_20350 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL541_20355 PF01965 DJ-1/PfpI family AL541_20360 PF00266 Aminotransferase class-V AL541_20365 PF17158 Membrane-associated sensor, integral membrane domain AL541_20365 PF00990 Diguanylate cyclase, GGDEF domain AL541_20370 PF02657 Fe-S metabolism associated domain AL541_20375 PF00899 ThiF family AL541_20380 PF06725 3D domain AL541_20380 PF03562 MltA specific insert domain AL541_20395 PF00583 Acetyltransferase (GNAT) family AL541_20395 PF00696 Amino acid kinase family AL541_20415 PF13538 UvrD-like helicase C-terminal domain AL541_20420 PF12705 PD-(D/E)XK nuclease superfamily AL541_20420 PF00580 UvrD/REP helicase N-terminal domain AL541_20420 PF13361 UvrD-like helicase C-terminal domain AL541_20430 PF17946 RecC C-terminal domain AL541_20435 PF00884 Sulfatase AL541_20435 PF11893 Domain of unknown function (DUF3413) AL541_20445 PF03466 LysR substrate binding domain AL541_20445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_20450 PF07130 YebG protein AL541_20465 PF14602 Hexapeptide repeat of succinyl-transferase AL541_20465 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL541_20470 PF03009 Glycerophosphoryl diester phosphodiesterase family AL541_20475 PF07690 Major Facilitator Superfamily AL541_20485 PF00230 Major intrinsic protein AL541_20490 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL541_20490 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL541_20495 PF00455 DeoR C terminal sensor domain AL541_20495 PF08220 DeoR-like helix-turn-helix domain AL541_20500 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL541_20500 PF01266 FAD dependent oxidoreductase AL541_20505 PF01544 CorA-like Mg2+ transporter protein AL541_20525 PF00356 Bacterial regulatory proteins, lacI family AL541_20530 PF03466 LysR substrate binding domain AL541_20530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_20540 PF00196 Bacterial regulatory proteins, luxR family AL541_20570 PF00501 AMP-binding enzyme AL541_20580 PF03466 LysR substrate binding domain AL541_20580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_20585 PF00009 Elongation factor Tu GTP binding domain AL541_20585 PF03764 Elongation factor G, domain IV AL541_20585 PF14492 Elongation Factor G, domain II AL541_20585 PF00679 Elongation factor G C-terminus AL541_20585 PF03144 Elongation factor Tu domain 2 AL541_20590 PF18073 Rubredoxin metal binding domain AL541_20600 PF18429 Domain of unknown function (DUF5609) AL541_20610 PF01048 Phosphorylase superfamily AL541_20615 PF01676 Metalloenzyme superfamily AL541_20620 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL541_20620 PF00591 Glycosyl transferase family, a/b domain AL541_20620 PF02885 Glycosyl transferase family, helical bundle domain AL541_20625 PF01791 DeoC/LacD family aldolase AL541_20630 PF01773 Na+ dependent nucleoside transporter N-terminus AL541_20630 PF07662 Na+ dependent nucleoside transporter C-terminus AL541_20630 PF07670 Nucleoside recognition AL541_20635 PF01026 TatD related DNase AL541_20645 PF16658 Class II release factor RF3, C-terminal domain AL541_20645 PF00009 Elongation factor Tu GTP binding domain AL541_20645 PF03144 Elongation factor Tu domain 2 AL541_20665 PF13508 Acetyltransferase (GNAT) domain AL541_20680 PF03707 Bacterial signalling protein N terminal repeat AL541_20680 PF00990 Diguanylate cyclase, GGDEF domain AL541_20680 PF00563 EAL domain AL541_20695 PF01554 MatE AL541_20705 PF07719 Tetratricopeptide repeat AL541_20705 PF13181 Tetratricopeptide repeat AL541_20710 PF01138 3' exoribonuclease family, domain 1 AL541_20710 PF00575 S1 RNA binding domain AL541_20710 PF00013 KH domain AL541_20710 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL541_20710 PF03725 3' exoribonuclease family, domain 2 AL541_20715 PF00312 Ribosomal protein S15 AL541_20720 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL541_20720 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL541_20720 PF09157 Pseudouridine synthase II TruB, C-terminal AL541_20725 PF02033 Ribosome-binding factor A AL541_20730 PF08364 Bacterial translation initiation factor IF-2 associated region AL541_20730 PF11987 Translation-initiation factor 2 AL541_20730 PF04760 Translation initiation factor IF-2, N-terminal region AL541_20730 PF00009 Elongation factor Tu GTP binding domain AL541_20735 PF00575 S1 RNA binding domain AL541_20735 PF13184 NusA-like KH domain AL541_20735 PF08529 NusA N-terminal domain AL541_20740 PF17384 RimP C-terminal SH3 domain AL541_20740 PF02576 RimP N-terminal domain AL541_20755 PF03840 Preprotein translocase SecG subunit AL541_20765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_20765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_20765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_20765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_20770 PF00809 Pterin binding enzyme AL541_20775 PF06480 FtsH Extracellular AL541_20775 PF01434 Peptidase family M41 AL541_20775 PF00004 ATPase family associated with various cellular activities (AAA) AL541_20775 PF17862 AAA+ lid domain AL541_20780 PF01728 FtsJ-like methyltransferase AL541_20785 PF01985 CRS1 / YhbY (CRM) domain AL541_20790 PF03449 Transcription elongation factor, N-terminal AL541_20790 PF01272 Transcription elongation factor, GreA/GreB, C-term AL541_20795 PF13609 Gram-negative porin AL541_20800 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL541_20810 PF00579 tRNA synthetases class I (W and Y) AL541_20815 PF08525 Opacity-associated protein A N-terminal motif AL541_20815 PF01551 Peptidase family M23 AL541_20815 PF01476 LysM domain AL541_20820 PF00873 AcrB/AcrD/AcrF family AL541_20830 PF01521 Iron-sulphur cluster biosynthesis AL541_20835 PF00202 Aminotransferase class-III AL541_20840 PF01594 AI-2E family transporter AL541_20845 PF08468 Methyltransferase small domain N-terminal AL541_20845 PF05175 Methyltransferase small domain AL541_20850 PF09308 LuxQ, periplasmic AL541_20850 PF00072 Response regulator receiver domain AL541_20850 PF00512 His Kinase A (phospho-acceptor) domain AL541_20850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_20855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_20860 PF00528 Binding-protein-dependent transport system inner membrane component AL541_20865 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_20865 PF00528 Binding-protein-dependent transport system inner membrane component AL541_20870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_20870 PF00005 ABC transporter AL541_20875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_20875 PF00005 ABC transporter AL541_20885 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL541_20890 PF02838 Glycosyl hydrolase family 20, domain 2 AL541_20890 PF00728 Glycosyl hydrolase family 20, catalytic domain AL541_20895 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL541_20895 PF06165 Glycosyltransferase family 36 AL541_20900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_20900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_20900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_20900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_20905 PF00005 ABC transporter AL541_20905 PF08402 TOBE domain AL541_20915 PF13416 Bacterial extracellular solute-binding protein AL541_20920 PF00909 Ammonium Transporter Family AL541_20925 PF00543 Nitrogen regulatory protein P-II AL541_20930 PF06062 Uncharacterised protein family (UPF0231) AL541_20935 PF00330 Aconitase family (aconitate hydratase) AL541_20935 PF06434 Aconitate hydratase 2 N-terminus AL541_20935 PF11791 Aconitate B N-terminal domain AL541_20940 PF01734 Patatin-like phospholipase AL541_20945 PF00905 Penicillin binding protein transpeptidase domain AL541_20945 PF00912 Transglycosylase AL541_20945 PF14814 Bifunctional transglycosylase second domain AL541_20950 PF00270 DEAD/DEAH box helicase AL541_20950 PF04408 Helicase associated domain (HA2) AL541_20950 PF08482 ATP-dependent helicase C-terminal AL541_20950 PF00271 Helicase conserved C-terminal domain AL541_20955 PF03749 Sugar fermentation stimulation protein RE domain AL541_20955 PF17746 SfsA N-terminal OB domain AL541_20960 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL541_20965 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL541_20970 PF01743 Poly A polymerase head domain AL541_20970 PF12626 Polymerase A arginine-rich C-terminus AL541_20970 PF12627 Probable RNA and SrmB- binding site of polymerase A AL541_20975 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL541_20980 PF02548 Ketopantoate hydroxymethyltransferase AL541_20985 PF02569 Pantoate-beta-alanine ligase AL541_20990 PF03279 Bacterial lipid A biosynthesis acyltransferase AL541_21000 PF01061 ABC-2 type transporter AL541_21005 PF00005 ABC transporter AL541_21010 PF01740 STAS domain AL541_21010 PF00916 Sulfate permease family AL541_21015 PF00484 Carbonic anhydrase AL541_21020 PF00156 Phosphoribosyl transferase domain AL541_21025 PF00440 Bacterial regulatory proteins, tetR family AL541_21030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_21030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_21035 PF02817 e3 binding domain AL541_21035 PF00364 Biotin-requiring enzyme AL541_21035 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL541_21040 PF17831 Pyruvate dehydrogenase E1 component middle domain AL541_21040 PF00456 Transketolase, thiamine diphosphate binding domain AL541_21045 PF07729 FCD domain AL541_21045 PF00392 Bacterial regulatory proteins, gntR family AL541_21050 PF01510 N-acetylmuramoyl-L-alanine amidase AL541_21055 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL541_21055 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL541_21060 PF00114 Pilin (bacterial filament) AL541_21060 PF07963 Prokaryotic N-terminal methylation motif AL541_21065 PF00437 Type II/IV secretion system protein AL541_21065 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL541_21070 PF00482 Type II secretion system (T2SS), protein F AL541_21075 PF06750 Bacterial Peptidase A24 N-terminal domain AL541_21075 PF01478 Type IV leader peptidase family AL541_21080 PF01121 Dephospho-CoA kinase AL541_21085 PF07072 Cell division protein AL541_21090 PF03884 DNA gyrase inhibitor YacG AL541_21095 PF01245 Ribosomal protein L19 AL541_21100 PF01746 tRNA (Guanine-1)-methyltransferase AL541_21105 PF05239 PRC-barrel domain AL541_21105 PF01782 RimM N-terminal domain AL541_21110 PF00886 Ribosomal protein S16 AL541_21115 PF00448 SRP54-type protein, GTPase domain AL541_21115 PF02881 SRP54-type protein, helical bundle domain AL541_21115 PF02978 Signal peptide binding domain AL541_21120 PF01578 Cytochrome C assembly protein AL541_21125 PF01595 Cyclin M transmembrane N-terminal domain AL541_21125 PF03471 Transporter associated domain AL541_21125 PF00571 CBS domain AL541_21130 PF02664 S-Ribosylhomocysteinase (LuxS) AL541_21140 PF04262 Glutamate-cysteine ligase AL541_21145 PF05193 Peptidase M16 inactive domain AL541_21145 PF00675 Insulinase (Peptidase family M16) AL541_21150 PF09335 SNARE associated Golgi protein AL541_21160 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL541_21165 PF00682 HMGL-like AL541_21165 PF00364 Biotin-requiring enzyme AL541_21165 PF02436 Conserved carboxylase domain AL541_21170 PF04277 Oxaloacetate decarboxylase, gamma chain AL541_21225 PF02599 Global regulator protein family AL541_21230 PF13840 ACT domain AL541_21230 PF01842 ACT domain AL541_21230 PF00696 Amino acid kinase family AL541_21235 PF01411 tRNA synthetases class II (A) AL541_21235 PF02272 DHHA1 domain AL541_21235 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL541_21240 PF02631 RecX family AL541_21245 PF00154 recA bacterial DNA recombination protein AL541_21250 PF02464 Competence-damaged protein AL541_21255 PF05188 MutS domain II AL541_21255 PF00488 MutS domain V AL541_21255 PF05192 MutS domain III AL541_21255 PF01624 MutS domain I AL541_21255 PF05190 MutS family domain IV AL541_21260 PF04545 Sigma-70, region 4 AL541_21260 PF04539 Sigma-70 region 3 AL541_21260 PF04542 Sigma-70 region 2 AL541_21260 PF00140 Sigma-70 factor, region 1.2 AL541_21265 PF01551 Peptidase family M23 AL541_21265 PF01476 LysM domain AL541_21275 PF01975 Survival protein SurE AL541_21280 PF01142 tRNA pseudouridine synthase D (TruD) AL541_21285 PF02542 YgbB family AL541_21290 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL541_21295 PF04977 Septum formation initiator AL541_21300 PF03952 Enolase, N-terminal domain AL541_21300 PF00113 Enolase, C-terminal TIM barrel domain AL541_21305 PF00117 Glutamine amidotransferase class-I AL541_21305 PF06418 CTP synthase N-terminus AL541_21310 PF03819 MazG nucleotide pyrophosphohydrolase domain AL541_21315 PF04607 Region found in RelA / SpoT proteins AL541_21315 PF13291 ACT domain AL541_21315 PF02824 TGS domain AL541_21325 PF05958 tRNA (Uracil-5-)-methyltransferase AL541_21325 PF01938 TRAM domain AL541_21335 PF00072 Response regulator receiver domain AL541_21335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL541_21335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_21335 PF00512 His Kinase A (phospho-acceptor) domain AL541_21335 PF00672 HAMP domain AL541_21335 PF01627 Hpt domain AL541_21340 PF01648 4'-phosphopantetheinyl transferase superfamily AL541_21345 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL541_21350 PF11967 Recombination protein O N terminal AL541_21350 PF02565 Recombination protein O C terminal AL541_21355 PF07650 KH domain AL541_21355 PF01926 50S ribosome-binding GTPase AL541_21360 PF00035 Double-stranded RNA binding motif AL541_21360 PF14622 Ribonuclease-III-like AL541_21365 PF10502 Signal peptidase, peptidase S26 AL541_21370 PF06421 GTP-binding protein LepA C-terminus AL541_21370 PF03144 Elongation factor Tu domain 2 AL541_21370 PF00009 Elongation factor Tu GTP binding domain AL541_21370 PF00679 Elongation factor G C-terminus AL541_21380 PF03888 MucB/RseB N-terminal domain AL541_21380 PF17188 MucB/RseB C-terminal domain AL541_21385 PF03873 Anti sigma-E protein RseA, C-terminal domain AL541_21385 PF03872 Anti sigma-E protein RseA, N-terminal domain AL541_21390 PF08281 Sigma-70, region 4 AL541_21390 PF04542 Sigma-70 region 2 AL541_21400 PF00890 FAD binding domain AL541_21400 PF02910 Fumarate reductase flavoprotein C-term AL541_21410 PF03937 Flavinator of succinate dehydrogenase AL541_21415 PF01571 Aminomethyltransferase folate-binding domain AL541_21430 PF01494 FAD binding domain AL541_21435 PF01494 FAD binding domain AL541_21440 PF03695 Uncharacterised protein family (UPF0149) AL541_21450 PF05164 Cell division protein ZapA AL541_21460 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL541_21465 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL541_21470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL541_21470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_21470 PF01842 ACT domain AL541_21475 PF04402 Protein of unknown function (DUF541) AL541_21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_21480 PF03466 LysR substrate binding domain AL541_21485 PF01810 LysE type translocator AL541_21495 PF05552 Conserved TM helix AL541_21495 PF00924 Mechanosensitive ion channel AL541_21500 PF01116 Fructose-bisphosphate aldolase class-II AL541_21505 PF00162 Phosphoglycerate kinase AL541_21510 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_21510 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL541_21515 PF00593 TonB dependent receptor AL541_21515 PF07715 TonB-dependent Receptor Plug Domain AL541_21520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_21520 PF03466 LysR substrate binding domain AL541_21525 PF02780 Transketolase, C-terminal domain AL541_21525 PF02779 Transketolase, pyrimidine binding domain AL541_21525 PF00456 Transketolase, thiamine diphosphate binding domain AL541_21535 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL541_21535 PF02772 S-adenosylmethionine synthetase, central domain AL541_21535 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL541_21545 PF17283 SprT-like zinc ribbon domain AL541_21545 PF10263 SprT-like family AL541_21550 PF04231 Endonuclease I AL541_21555 PF04452 RNA methyltransferase AL541_21560 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL541_21560 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL541_21565 PF02622 Uncharacterized ACR, COG1678 AL541_21570 PF03652 Holliday junction resolvase AL541_21575 PF00437 Type II/IV secretion system protein AL541_21580 PF00437 Type II/IV secretion system protein AL541_21585 PF01168 Alanine racemase, N-terminal domain AL541_21590 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL541_21590 PF03807 NADP oxidoreductase coenzyme F420-dependent AL541_21595 PF02325 YGGT family AL541_21600 PF02594 Uncharacterised ACR, YggU family COG1872 AL541_21610 PF01725 Ham1 family AL541_21615 PF04055 Radical SAM superfamily AL541_21615 PF06969 HemN C-terminal domain AL541_21620 PF04960 Glutaminase AL541_21625 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL541_21630 PF02390 Putative methyltransferase AL541_21635 PF14815 NUDIX domain AL541_21635 PF00730 HhH-GPD superfamily base excision DNA repair protein AL541_21635 PF00633 Helix-hairpin-helix motif AL541_21640 PF04362 Bacterial Fe(2+) trafficking AL541_21645 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL541_21645 PF01464 Transglycosylase SLT domain AL541_21685 PF17200 Single Cache domain 2 AL541_21685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_21685 PF00672 HAMP domain AL541_21720 PF00171 Aldehyde dehydrogenase family AL541_21775 PF04794 YdjC-like protein AL541_21780 PF02056 Family 4 glycosyl hydrolase AL541_21780 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL541_21785 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL541_21790 PF02378 Phosphotransferase system, EIIC AL541_21795 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_21800 PF01522 Polysaccharide deacetylase AL541_21900 PF10011 Predicted membrane protein (DUF2254) AL541_21910 PF03739 Lipopolysaccharide export system permease LptF/LptG AL541_21915 PF03739 Lipopolysaccharide export system permease LptF/LptG AL541_21920 PF00883 Cytosol aminopeptidase family, catalytic domain AL541_21920 PF02789 Cytosol aminopeptidase family, N-terminal domain AL541_21925 PF04364 DNA polymerase III chi subunit, HolC AL541_21930 PF08264 Anticodon-binding domain of tRNA AL541_21930 PF00133 tRNA synthetases class I (I, L, M and V) AL541_21930 PF10458 Valyl tRNA synthetase tRNA binding arm AL541_21940 PF00583 Acetyltransferase (GNAT) family AL541_21950 PF06877 Regulator of ribonuclease activity B AL541_21960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL541_21960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL541_21970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL541_21970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL541_21975 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL541_21975 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL541_21980 PF01042 Endoribonuclease L-PSP AL541_21985 PF01553 Acyltransferase AL541_21990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL541_21995 PF01722 BolA-like protein AL541_22005 PF05494 MlaC protein AL541_22010 PF02470 MlaD protein AL541_22015 PF02405 Permease MlaE AL541_22020 PF00005 ABC transporter AL541_22025 PF01699 Sodium/calcium exchanger protein AL541_22030 PF00571 CBS domain AL541_22030 PF01380 SIS domain AL541_22040 PF03968 OstA-like protein AL541_22045 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL541_22045 PF00005 ABC transporter AL541_22050 PF04552 Sigma-54, DNA binding domain AL541_22050 PF04963 Sigma-54 factor, core binding domain AL541_22050 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL541_22055 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL541_22060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_22065 PF03668 P-loop ATPase protein family AL541_22070 PF00381 PTS HPr component phosphorylation site AL541_22075 PF00571 CBS domain AL541_22075 PF01769 Divalent cation transporter AL541_22075 PF03448 MgtE intracellular N domain AL541_22080 PF01523 Putative modulator of DNA gyrase AL541_22085 PF04751 Protein of unknown function (DUF615) AL541_22090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_22090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL541_22095 PF00849 RNA pseudouridylate synthase AL541_22105 PF00176 SNF2 family N-terminal domain AL541_22105 PF18337 RapA N-terminal Tudor like domain AL541_22105 PF18339 RapA N-terminal Tudor like domain 1 AL541_22105 PF12137 RNA polymerase recycling family C-terminal AL541_22105 PF00271 Helicase conserved C-terminal domain AL541_22110 PF02562 PhoH-like protein AL541_22110 PF13638 PIN domain AL541_22115 PF01523 Putative modulator of DNA gyrase AL541_22120 PF00795 Carbon-nitrogen hydrolase AL541_22125 PF13502 AsmA-like C-terminal region AL541_22125 PF13116 Protein of unknown function AL541_22130 PF10150 Ribonuclease E/G family AL541_22130 PF00575 S1 RNA binding domain AL541_22135 PF02545 Maf-like protein AL541_22140 PF04093 rod shape-determining protein MreD AL541_22145 PF04085 rod shape-determining protein MreC AL541_22185 PF07963 Prokaryotic N-terminal methylation motif AL541_22185 PF00114 Pilin (bacterial filament) AL541_22195 PF00482 Type II secretion system (T2SS), protein F AL541_22200 PF00437 Type II/IV secretion system protein AL541_22200 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL541_22210 PF13401 AAA domain AL541_22210 PF01471 Putative peptidoglycan binding domain AL541_22215 PF03958 Bacterial type II/III secretion system short domain AL541_22215 PF00263 Bacterial type II and III secretion system protein AL541_22235 PF00990 Diguanylate cyclase, GGDEF domain AL541_22235 PF17157 Gammaproteobacterial periplasmic sensor domain AL541_22235 PF00563 EAL domain AL541_22240 PF00436 Single-strand binding protein family AL541_22245 PF00196 Bacterial regulatory proteins, luxR family AL541_22250 PF00483 Nucleotidyl transferase AL541_22255 PF17755 UvrA DNA-binding domain AL541_22255 PF00005 ABC transporter AL541_22255 PF17760 UvrA interaction domain AL541_22265 PF00266 Aminotransferase class-V AL541_22275 PF01842 ACT domain AL541_22275 PF00696 Amino acid kinase family AL541_22280 PF02607 B12 binding domain AL541_22280 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL541_22280 PF02310 B12 binding domain AL541_22280 PF00809 Pterin binding enzyme AL541_22280 PF02574 Homocysteine S-methyltransferase AL541_22285 PF00999 Sodium/hydrogen exchanger family AL541_22345 PF01507 Phosphoadenosine phosphosulfate reductase family AL541_22350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL541_22350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL541_22355 PF00258 Flavodoxin AL541_22355 PF00175 Oxidoreductase NAD-binding domain AL541_22355 PF00667 FAD binding domain AL541_22375 PF01207 Dihydrouridine synthase (Dus) AL541_22380 PF01475 Ferric uptake regulator family AL541_22390 PF00342 Phosphoglucose isomerase AL541_22395 PF01894 Uncharacterised protein family UPF0047 AL541_22400 PF01168 Alanine racemase, N-terminal domain AL541_22400 PF00842 Alanine racemase, C-terminal domain AL541_22405 PF03796 DnaB-like helicase C terminal domain AL541_22405 PF00772 DnaB-like helicase N terminal domain AL541_22415 PF03948 Ribosomal protein L9, C-terminal domain AL541_22415 PF01281 Ribosomal protein L9, N-terminal domain AL541_22420 PF01084 Ribosomal protein S18 AL541_22425 PF00436 Single-strand binding protein family AL541_22430 PF01250 Ribosomal protein S6 AL541_22435 PF00834 Ribulose-phosphate 3 epimerase family AL541_22440 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL541_22450 PF01761 3-dehydroquinate synthase AL541_22455 PF01202 Shikimate kinase AL541_22460 PF03958 Bacterial type II/III secretion system short domain AL541_22460 PF07660 Secretin and TonB N terminus short domain AL541_22460 PF00263 Bacterial type II and III secretion system protein AL541_22460 PF11741 AMIN domain AL541_22485 PF17092 Penicillin-binding protein OB-like domain AL541_22485 PF00912 Transglycosylase AL541_22485 PF00905 Penicillin binding protein transpeptidase domain AL541_22490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_22490 PF03466 LysR substrate binding domain AL541_22495 PF08534 Redoxin AL541_22495 PF00462 Glutaredoxin AL541_22500 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_22500 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_22510 PF00583 Acetyltransferase (GNAT) family AL541_22510 PF14698 Argininosuccinate lyase C-terminal AL541_22510 PF00206 Lyase AL541_22515 PF00764 Arginosuccinate synthase AL541_22520 PF00696 Amino acid kinase family AL541_22525 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL541_22525 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL541_22530 PF01546 Peptidase family M20/M25/M40 AL541_22530 PF07687 Peptidase dimerisation domain AL541_22535 PF00311 Phosphoenolpyruvate carboxylase AL541_22545 PF02219 Methylenetetrahydrofolate reductase AL541_22550 PF00696 Amino acid kinase family AL541_22550 PF03447 Homoserine dehydrogenase, NAD binding domain AL541_22550 PF00742 Homoserine dehydrogenase AL541_22555 PF01053 Cys/Met metabolism PLP-dependent enzyme AL541_22565 PF00390 Malic enzyme, N-terminal domain AL541_22565 PF03949 Malic enzyme, NAD binding domain AL541_22570 PF00210 Ferritin-like domain AL541_22575 PF04324 BFD-like [2Fe-2S] binding domain AL541_22580 PF03143 Elongation factor Tu C-terminal domain AL541_22580 PF03144 Elongation factor Tu domain 2 AL541_22580 PF00009 Elongation factor Tu GTP binding domain AL541_22585 PF00009 Elongation factor Tu GTP binding domain AL541_22585 PF03144 Elongation factor Tu domain 2 AL541_22585 PF03764 Elongation factor G, domain IV AL541_22585 PF14492 Elongation Factor G, domain II AL541_22585 PF00679 Elongation factor G C-terminus AL541_22590 PF00177 Ribosomal protein S7p/S5e AL541_22595 PF00164 Ribosomal protein S12/S23 AL541_22600 PF04077 DsrH like protein AL541_22605 PF02635 DsrE/DsrF-like family AL541_22610 PF02635 DsrE/DsrF-like family AL541_22615 PF13309 HTH domain AL541_22615 PF08348 YheO-like PAS domain AL541_22620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_22620 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL541_22630 PF04102 SlyX AL541_22635 PF01112 Asparaginase AL541_22645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_22655 PF02254 TrkA-N domain AL541_22655 PF00999 Sodium/hydrogen exchanger family AL541_22660 PF02525 Flavodoxin-like fold AL541_22665 PF12848 ABC transporter AL541_22665 PF00005 ABC transporter AL541_22675 PF00561 alpha/beta hydrolase fold AL541_22680 PF06794 Uncharacterised protein family (UPF0270) AL541_22685 PF00485 Phosphoribulokinase / Uridine kinase family AL541_22690 PF00027 Cyclic nucleotide-binding domain AL541_22690 PF13545 Crp-like helix-turn-helix domain AL541_22700 PF00171 Aldehyde dehydrogenase family AL541_22705 PF04958 Arginine N-succinyltransferase beta subunit AL541_22710 PF00202 Aminotransferase class-III AL541_22715 PF00117 Glutamine amidotransferase class-I AL541_22730 PF00579 tRNA synthetases class I (W and Y) AL541_22735 PF13419 Haloacid dehalogenase-like hydrolase AL541_22740 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL541_22740 PF00588 SpoU rRNA Methylase family AL541_22745 PF17876 Cold shock domain AL541_22745 PF08461 Ribonuclease R winged-helix domain AL541_22745 PF08206 Ribonuclease B OB domain AL541_22745 PF00575 S1 RNA binding domain AL541_22745 PF00773 RNB domain AL541_22750 PF02082 Transcriptional regulator AL541_22755 PF00970 Oxidoreductase FAD-binding domain AL541_22755 PF00042 Globin AL541_22755 PF00175 Oxidoreductase NAD-binding domain AL541_22760 PF08238 Sel1 repeat AL541_22770 PF00709 Adenylosuccinate synthetase AL541_22775 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL541_22780 PF01145 SPFH domain / Band 7 family AL541_22785 PF12221 Bacterial membrane protein N terminal AL541_22785 PF01145 SPFH domain / Band 7 family AL541_22790 PF16360 GTP-binding GTPase Middle Region AL541_22790 PF13167 GTP-binding GTPase N-terminal AL541_22790 PF01926 50S ribosome-binding GTPase AL541_22795 PF17209 Hfq protein AL541_22805 PF01119 DNA mismatch repair protein, C-terminal domain AL541_22805 PF08676 MutL C terminal dimerisation domain AL541_22810 PF01520 N-acetylmuramoyl-L-alanine amidase AL541_22815 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL541_22825 PF08331 Domain of unknown function (DUF1730) AL541_22890 PF00929 Exonuclease AL541_22895 PF03193 RsgA GTPase AL541_22900 PF02666 Phosphatidylserine decarboxylase AL541_22905 PF00939 Sodium:sulfate symporter transmembrane region AL541_22915 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL541_22915 PF01676 Metalloenzyme superfamily AL541_22920 PF00581 Rhodanese-like domain AL541_22925 PF02556 Preprotein translocase subunit SecB AL541_22930 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL541_22930 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL541_22935 PF06426 Serine acetyltransferase, N-terminal AL541_22935 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_22940 PF01551 Peptidase family M23 AL541_22950 PF00440 Bacterial regulatory proteins, tetR family AL541_22950 PF08360 QacR-like protein, C-terminal region AL541_22960 PF00152 tRNA synthetases class II (D, K and N) AL541_22965 PF02910 Fumarate reductase flavoprotein C-term AL541_22965 PF00890 FAD binding domain AL541_22970 PF13085 2Fe-2S iron-sulfur cluster binding domain AL541_22970 PF13183 4Fe-4S dicluster domain AL541_22975 PF02300 Fumarate reductase subunit C AL541_22980 PF02313 Fumarate reductase subunit D AL541_22990 PF01132 Elongation factor P (EF-P) OB domain AL541_22990 PF08207 Elongation factor P (EF-P) KOW-like domain AL541_22990 PF09285 Elongation factor P, C-terminal AL541_22995 PF04055 Radical SAM superfamily AL541_23000 PF02308 MgtC family AL541_23010 PF00118 TCP-1/cpn60 chaperonin family AL541_23015 PF00166 Chaperonin 10 Kd subunit AL541_23020 PF01554 MatE AL541_23025 PF00365 Phosphofructokinase AL541_23030 PF01545 Cation efflux family AL541_23030 PF16916 Dimerisation domain of Zinc Transporter AL541_23035 PF07813 LTXXQ motif family protein AL541_23040 PF00486 Transcriptional regulatory protein, C terminal AL541_23040 PF00072 Response regulator receiver domain AL541_23045 PF16527 Two-component sensor protein CpxA, periplasmic domain AL541_23045 PF00512 His Kinase A (phospho-acceptor) domain AL541_23045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_23045 PF00672 HAMP domain AL541_23050 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL541_23050 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL541_23055 PF00588 SpoU rRNA Methylase family AL541_23060 PF04186 FxsA cytoplasmic membrane protein AL541_23065 PF10415 Fumarase C C-terminus AL541_23065 PF00206 Lyase AL541_23070 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL541_23075 PF11412 Disulphide bond corrector protein DsbC AL541_23075 PF02683 Cytochrome C biogenesis protein transmembrane region AL541_23080 PF00196 Bacterial regulatory proteins, luxR family AL541_23080 PF00072 Response regulator receiver domain AL541_23085 PF00999 Sodium/hydrogen exchanger family AL541_23085 PF03471 Transporter associated domain AL541_23085 PF02080 TrkA-C domain AL541_23095 PF00474 Sodium:solute symporter family AL541_23110 PF00206 Lyase AL541_23110 PF10415 Fumarase C C-terminus AL541_23115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_23115 PF09308 LuxQ, periplasmic AL541_23115 PF00512 His Kinase A (phospho-acceptor) domain AL541_23115 PF00072 Response regulator receiver domain AL541_23120 PF12832 MFS_1 like family AL541_23135 PF16177 Acetyl-coenzyme A synthetase N-terminus AL541_23135 PF13193 AMP-binding enzyme C-terminal domain AL541_23135 PF00501 AMP-binding enzyme AL541_23140 PF01220 Dehydroquinase class II AL541_23145 PF00364 Biotin-requiring enzyme AL541_23150 PF00289 Biotin carboxylase, N-terminal domain AL541_23150 PF02785 Biotin carboxylase C-terminal domain AL541_23150 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL541_23165 PF01207 Dihydrouridine synthase (Dus) AL541_23170 PF02954 Bacterial regulatory protein, Fis family AL541_23180 PF00005 ABC transporter AL541_23180 PF12848 ABC transporter AL541_23235 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL541_23235 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL541_23235 PF01276 Orn/Lys/Arg decarboxylase, major domain AL541_23240 PF13520 Amino acid permease AL541_23250 PF18500 CadC C-terminal domain 1 AL541_23250 PF00486 Transcriptional regulatory protein, C terminal AL541_23255 PF13411 MerR HTH family regulatory protein AL541_23265 PF02142 MGS-like domain AL541_23265 PF01808 AICARFT/IMPCHase bienzyme AL541_23270 PF02844 Phosphoribosylglycinamide synthetase, N domain AL541_23270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL541_23270 PF02843 Phosphoribosylglycinamide synthetase, C domain AL541_23280 PF00216 Bacterial DNA-binding protein AL541_23285 PF00571 CBS domain AL541_23285 PF01595 Cyclin M transmembrane N-terminal domain AL541_23290 PF04222 Protein of unknown function (DUF416) AL541_23295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_23300 PF03167 Uracil DNA glycosylase superfamily AL541_23305 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL541_23310 PF09297 NADH pyrophosphatase zinc ribbon domain AL541_23310 PF00293 NUDIX domain AL541_23315 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL541_23320 PF04997 RNA polymerase Rpb1, domain 1 AL541_23320 PF04998 RNA polymerase Rpb1, domain 5 AL541_23320 PF05000 RNA polymerase Rpb1, domain 4 AL541_23320 PF04983 RNA polymerase Rpb1, domain 3 AL541_23320 PF00623 RNA polymerase Rpb1, domain 2 AL541_23325 PF04560 RNA polymerase Rpb2, domain 7 AL541_23325 PF04563 RNA polymerase beta subunit AL541_23325 PF04561 RNA polymerase Rpb2, domain 2 AL541_23325 PF10385 RNA polymerase beta subunit external 1 domain AL541_23325 PF04565 RNA polymerase Rpb2, domain 3 AL541_23325 PF00562 RNA polymerase Rpb2, domain 6 AL541_23330 PF00542 Ribosomal protein L7/L12 C-terminal domain AL541_23330 PF16320 Ribosomal protein L7/L12 dimerisation domain AL541_23335 PF00466 Ribosomal protein L10 AL541_23340 PF00687 Ribosomal protein L1p/L10e family AL541_23345 PF00298 Ribosomal protein L11, RNA binding domain AL541_23345 PF03946 Ribosomal protein L11, N-terminal domain AL541_23350 PF00467 KOW motif AL541_23350 PF02357 Transcription termination factor nusG AL541_23355 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL541_23365 PF00009 Elongation factor Tu GTP binding domain AL541_23365 PF03143 Elongation factor Tu C-terminal domain AL541_23365 PF03144 Elongation factor Tu domain 2 AL541_23395 PF00485 Phosphoribulokinase / Uridine kinase family AL541_23400 PF02237 Biotin protein ligase C terminal domain AL541_23400 PF03099 Biotin/lipoate A/B protein ligase family AL541_23400 PF08279 HTH domain AL541_23405 PF01565 FAD binding domain AL541_23405 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL541_23415 PF13091 PLD-like domain AL541_23480 PF01177 Asp/Glu/Hydantoin racemase AL541_23490 PF07715 TonB-dependent Receptor Plug Domain AL541_23490 PF00593 TonB dependent receptor AL541_23495 PF05958 tRNA (Uracil-5-)-methyltransferase AL541_23505 PF00440 Bacterial regulatory proteins, tetR family AL541_23510 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_23510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_23515 PF01554 MatE AL541_23520 PF04072 Leucine carboxyl methyltransferase AL541_23530 PF00717 Peptidase S24-like AL541_23530 PF01726 LexA DNA binding domain AL541_23540 PF01553 Acyltransferase AL541_23545 PF01040 UbiA prenyltransferase family AL541_23550 PF04345 Chorismate lyase AL541_23555 PF03748 Flagellar basal body-associated protein FliL AL541_23560 PF01694 Rhomboid family AL541_23560 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL541_23565 PF00581 Rhodanese-like domain AL541_23575 PF00140 Sigma-70 factor, region 1.2 AL541_23575 PF04542 Sigma-70 region 2 AL541_23575 PF04545 Sigma-70, region 4 AL541_23580 PF18075 FtsX extracellular domain AL541_23585 PF00005 ABC transporter AL541_23590 PF00448 SRP54-type protein, GTPase domain AL541_23590 PF02881 SRP54-type protein, helical bundle domain AL541_23605 PF01914 MarC family integral membrane protein AL541_23630 PF10694 Protein of unknown function (DUF2500) AL541_23650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_23650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL541_23655 PF01022 Bacterial regulatory protein, arsR family AL541_23660 PF08668 HDOD domain AL541_23660 PF00563 EAL domain AL541_23665 PF01810 LysE type translocator AL541_23670 PF12146 Serine aminopeptidase, S33 AL541_23695 PF00563 EAL domain AL541_23695 PF08495 FIST N domain AL541_23695 PF10442 FIST C domain AL541_23695 PF00990 Diguanylate cyclase, GGDEF domain AL541_23700 PF13419 Haloacid dehalogenase-like hydrolase AL541_23705 PF00589 Phage integrase family AL541_23705 PF02899 Phage integrase, N-terminal SAM-like domain AL541_23715 PF01678 Diaminopimelate epimerase AL541_23720 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL541_23720 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL541_23730 PF01491 Frataxin-like domain AL541_23735 PF01295 Adenylate cyclase, class-I AL541_23735 PF12633 Adenylate cyclase NT domain AL541_23740 PF03900 Porphobilinogen deaminase, C-terminal domain AL541_23740 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL541_23745 PF02602 Uroporphyrinogen-III synthase HemD AL541_23750 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL541_23755 PF07219 HemY protein N-terminus AL541_23795 PF00175 Oxidoreductase NAD-binding domain AL541_23800 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_23805 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL541_23815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_23815 PF07497 Rho termination factor, RNA-binding domain AL541_23815 PF07498 Rho termination factor, N-terminal domain AL541_23820 PF00085 Thioredoxin AL541_23825 PF00270 DEAD/DEAH box helicase AL541_23825 PF00271 Helicase conserved C-terminal domain AL541_23830 PF02541 Ppx/GppA phosphatase family AL541_23840 PF02592 Putative vitamin uptake transporter AL541_23855 PF16124 RecQ zinc-binding AL541_23855 PF00270 DEAD/DEAH box helicase AL541_23855 PF00271 Helicase conserved C-terminal domain AL541_23855 PF00570 HRDC domain AL541_23855 PF09382 RQC domain AL541_23860 PF00892 EamA-like transporter family AL541_23870 PF01810 LysE type translocator AL541_23885 PF13361 UvrD-like helicase C-terminal domain AL541_23885 PF00580 UvrD/REP helicase N-terminal domain AL541_23895 PF05114 Protein of unknown function (DUF692) AL541_23915 PF07690 Major Facilitator Superfamily AL541_23920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_23920 PF03466 LysR substrate binding domain AL541_23925 PF00557 Metallopeptidase family M24 AL541_23925 PF01321 Creatinase/Prolidase N-terminal domain AL541_23925 PF00557 Metallopeptidase family M24 AL541_23925 PF01321 Creatinase/Prolidase N-terminal domain AL541_23930 PF04055 Radical SAM superfamily AL541_23930 PF06968 Biotin and Thiamin Synthesis associated domain AL541_23935 PF05690 Thiazole biosynthesis protein ThiG AL541_23945 PF00899 ThiF family AL541_23950 PF02581 Thiamine monophosphate synthase AL541_23955 PF13667 ThiC-associated domain AL541_23955 PF01964 Radical SAM ThiC family AL541_23960 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL541_23965 PF07732 Multicopper oxidase AL541_23965 PF00394 Multicopper oxidase AL541_23965 PF07731 Multicopper oxidase AL541_24010 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_24015 PF07369 Protein of unknown function (DUF1488) AL541_24020 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL541_24020 PF08501 Shikimate dehydrogenase substrate binding domain AL541_24020 PF01488 Shikimate / quinate 5-dehydrogenase AL541_24025 PF01218 Coproporphyrinogen III oxidase AL541_24030 PF01300 Telomere recombination AL541_24035 PF00731 AIR carboxylase AL541_24040 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL541_24040 PF02222 ATP-grasp domain AL541_24045 PF01396 Topoisomerase DNA binding C4 zinc finger AL541_24055 PF04361 Protein of unknown function (DUF494) AL541_24060 PF02481 DNA recombination-mediator protein A AL541_24060 PF17782 DprA winged helix domain AL541_24070 PF01327 Polypeptide deformylase AL541_24075 PF02911 Formyl transferase, C-terminal domain AL541_24075 PF00551 Formyl transferase AL541_24080 PF01189 16S rRNA methyltransferase RsmB/F AL541_24080 PF01029 NusB family AL541_24085 PF02254 TrkA-N domain AL541_24085 PF02080 TrkA-C domain AL541_24090 PF02386 Cation transport protein AL541_24100 PF03006 Haemolysin-III related AL541_24105 PF07070 SpoOM protein AL541_24115 PF06288 Protein of unknown function (DUF1040) AL541_24120 PF12801 4Fe-4S binding domain AL541_24120 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL541_24120 PF13746 4Fe-4S dicluster domain AL541_24125 PF01636 Phosphotransferase enzyme family AL541_24130 PF01323 DSBA-like thioredoxin domain AL541_24135 PF01553 Acyltransferase AL541_24145 PF01078 Magnesium chelatase, subunit ChlI AL541_24145 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL541_24150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL541_24150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL541_24150 PF00205 Thiamine pyrophosphate enzyme, central domain AL541_24160 PF01063 Amino-transferase class IV AL541_24165 PF00920 Dehydratase family AL541_24170 PF00585 C-terminal regulatory domain of Threonine dehydratase AL541_24170 PF00291 Pyridoxal-phosphate dependent enzyme AL541_24175 PF03466 LysR substrate binding domain AL541_24175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_24180 PF07690 Major Facilitator Superfamily AL541_24185 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_24190 PF00528 Binding-protein-dependent transport system inner membrane component AL541_24195 PF12804 MobA-like NTP transferase domain AL541_24195 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_24200 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL541_24200 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL541_24205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_24205 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL541_24210 PF00231 ATP synthase AL541_24215 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL541_24215 PF00306 ATP synthase alpha/beta chain, C terminal domain AL541_24215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_24220 PF00213 ATP synthase delta (OSCP) subunit AL541_24225 PF00430 ATP synthase B/B' CF(0) AL541_24230 PF00137 ATP synthase subunit C AL541_24235 PF00119 ATP synthase A chain AL541_24240 PF03899 ATP synthase I chain AL541_24245 PF17762 HTH domain found in ParB protein AL541_24245 PF02195 ParB-like nuclease domain AL541_24250 PF13614 AAA domain AL541_24255 PF02527 rRNA small subunit methyltransferase G AL541_24260 PF13932 GidA associated domain AL541_24260 PF01134 Glucose inhibited division protein A AL541_24265 PF00258 Flavodoxin AL541_24270 PF10396 GTP-binding protein TrmE N-terminus AL541_24270 PF12631 MnmE helical domain AL541_24270 PF01926 50S ribosome-binding GTPase AL541_24275 PF14849 YidC periplasmic domain AL541_24275 PF02096 60Kd inner membrane protein AL541_24280 PF01809 Putative membrane protein insertion efficiency factor AL541_24285 PF00825 Ribonuclease P AL541_24290 PF00468 Ribosomal protein L34 AL541_24295 PF00005 ABC transporter AL541_24300 PF00528 Binding-protein-dependent transport system inner membrane component AL541_24305 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_24315 PF08299 Bacterial dnaA protein helix-turn-helix AL541_24315 PF11638 DnaA N-terminal domain AL541_24315 PF00308 Bacterial dnaA protein AL541_24320 PF02767 DNA polymerase III beta subunit, central domain AL541_24320 PF00712 DNA polymerase III beta subunit, N-terminal domain AL541_24320 PF02768 DNA polymerase III beta subunit, C-terminal domain AL541_24325 PF02463 RecF/RecN/SMC N terminal domain AL541_24330 PF00204 DNA gyrase B AL541_24330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_24330 PF18053 DNA gyrase B subunit insert domain AL541_24330 PF00986 DNA gyrase B subunit, carboxyl terminus AL541_24330 PF01751 Toprim domain AL541_24350 PF00011 Hsp20/alpha crystallin family AL541_24355 PF00155 Aminotransferase class I and II AL541_24360 PF00128 Alpha amylase, catalytic domain AL541_24365 PF02092 Glycyl-tRNA synthetase beta subunit AL541_24365 PF05746 DALR anticodon binding domain AL541_24370 PF02091 Glycyl-tRNA synthetase alpha subunit AL541_24375 PF01169 Uncharacterized protein family UPF0016 AL541_24385 PF01206 Sulfurtransferase TusA AL541_24395 PF03466 LysR substrate binding domain AL541_24395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_24400 PF08240 Alcohol dehydrogenase GroES-like domain AL541_24400 PF00107 Zinc-binding dehydrogenase AL541_24405 PF00108 Thiolase, N-terminal domain AL541_24405 PF02803 Thiolase, C-terminal domain AL541_24410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL541_24410 PF00378 Enoyl-CoA hydratase/isomerase AL541_24410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL541_24415 PF09186 Domain of unknown function (DUF1949) AL541_24415 PF01205 Uncharacterized protein family UPF0029 AL541_24420 PF02386 Cation transport protein AL541_24425 PF12724 Flavodoxin domain AL541_24465 PF03466 LysR substrate binding domain AL541_24465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_24470 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL541_24470 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL541_24475 PF04380 Membrane fusogenic activity AL541_24480 PF00873 AcrB/AcrD/AcrF family AL541_24485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_24490 PF16295 Tetracyclin repressor-like, C-terminal domain AL541_24490 PF00440 Bacterial regulatory proteins, tetR family AL541_24495 PF00580 UvrD/REP helicase N-terminal domain AL541_24495 PF13361 UvrD-like helicase C-terminal domain AL541_24500 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL541_24530 PF13419 Haloacid dehalogenase-like hydrolase AL541_24540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_24540 PF00005 ABC transporter AL541_24545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_24555 PF00528 Binding-protein-dependent transport system inner membrane component AL541_24555 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_24590 PF00069 Protein kinase domain AL541_24595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL541_24595 PF00356 Bacterial regulatory proteins, lacI family AL541_24600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_24600 PF03466 LysR substrate binding domain AL541_24605 PF00893 Small Multidrug Resistance protein AL541_24610 PF00893 Small Multidrug Resistance protein AL541_24615 PF00920 Dehydratase family AL541_24620 PF01202 Shikimate kinase AL541_24625 PF02447 GntP family permease AL541_24630 PF01081 KDPG and KHG aldolase AL541_24635 PF01048 Phosphorylase superfamily AL541_24640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_24640 PF03466 LysR substrate binding domain AL541_24645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_24645 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_24650 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL541_24655 PF01432 Peptidase family M3 AL541_24660 PF01037 Lrp/AsnC ligand binding domain AL541_24665 PF00563 EAL domain AL541_24665 PF00990 Diguanylate cyclase, GGDEF domain AL541_24665 PF08448 PAS fold AL541_24670 PF04445 Putative SAM-dependent methyltransferase AL541_24680 PF00892 EamA-like transporter family AL541_24685 PF00582 Universal stress protein family AL541_24690 PF00210 Ferritin-like domain AL541_24695 PF10625 Universal stress protein B (UspB) AL541_24705 PF00158 Sigma-54 interaction domain AL541_24705 PF01590 GAF domain AL541_24705 PF02954 Bacterial regulatory protein, Fis family AL541_24730 PF00781 Diacylglycerol kinase catalytic domain AL541_24760 PF01594 AI-2E family transporter AL541_24765 PF00563 EAL domain AL541_24765 PF03707 Bacterial signalling protein N terminal repeat AL541_24765 PF00990 Diguanylate cyclase, GGDEF domain AL541_24775 PF02646 RmuC family AL541_24780 PF01209 ubiE/COQ5 methyltransferase family AL541_24785 PF02036 SCP-2 sterol transfer family AL541_24790 PF03109 ABC1 family AL541_24795 PF02416 mttA/Hcf106 family AL541_24800 PF02416 mttA/Hcf106 family AL541_24805 PF00902 Sec-independent protein translocase protein (TatC) AL541_24815 PF01026 TatD related DNase AL541_24825 PF00490 Delta-aminolevulinic acid dehydratase AL541_24830 PF00583 Acetyltransferase (GNAT) family AL541_24840 PF01612 3'-5' exonuclease AL541_24840 PF00476 DNA polymerase family A AL541_24840 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL541_24840 PF01367 5'-3' exonuclease, C-terminal SAM fold AL541_24845 PF01926 50S ribosome-binding GTPase AL541_24850 PF00034 Cytochrome c AL541_24865 PF04220 Der GTPase activator (YihI) AL541_24870 PF10675 Protein of unknown function (DUF2489) AL541_24875 PF06969 HemN C-terminal domain AL541_24875 PF04055 Radical SAM superfamily AL541_24880 PF00962 Adenosine/AMP deaminase AL541_24885 PF00563 EAL domain AL541_24885 PF03707 Bacterial signalling protein N terminal repeat AL541_24885 PF00990 Diguanylate cyclase, GGDEF domain AL541_24890 PF00158 Sigma-54 interaction domain AL541_24890 PF00072 Response regulator receiver domain AL541_24890 PF02954 Bacterial regulatory protein, Fis family AL541_24895 PF00989 PAS fold AL541_24895 PF00512 His Kinase A (phospho-acceptor) domain AL541_24895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_24905 PF03951 Glutamine synthetase, beta-Grasp domain AL541_24905 PF00120 Glutamine synthetase, catalytic domain AL541_24915 PF08299 Bacterial dnaA protein helix-turn-helix AL541_24915 PF00308 Bacterial dnaA protein AL541_24925 PF03631 Virulence factor BrkB AL541_24930 PF02580 D-Tyr-tRNA(Tyr) deacylase AL541_24935 PF00583 Acetyltransferase (GNAT) family AL541_24935 PF09500 Putative thioesterase (yiiD_Cterm) AL541_24945 PF01293 Phosphoenolpyruvate carboxykinase AL541_24950 PF01430 Hsp33 protein AL541_24955 PF01479 S4 domain AL541_24960 PF11356 Type II secretion system protein C AL541_24965 PF00263 Bacterial type II and III secretion system protein AL541_24965 PF03958 Bacterial type II/III secretion system short domain AL541_24970 PF00437 Type II/IV secretion system protein AL541_24975 PF00482 Type II secretion system (T2SS), protein F AL541_24980 PF07963 Prokaryotic N-terminal methylation motif AL541_24980 PF08334 Type II secretion system (T2SS), protein G AL541_24985 PF12019 Type II transport protein GspH AL541_24990 PF02501 Type II secretion system (T2SS), protein I AL541_24990 PF07963 Prokaryotic N-terminal methylation motif AL541_24995 PF07963 Prokaryotic N-terminal methylation motif AL541_24995 PF11612 Type II secretion system (T2SS), protein J AL541_25000 PF03934 Type II secretion system (T2SS), protein K AL541_25005 PF12693 GspL periplasmic domain AL541_25005 PF05134 Type II secretion system (T2SS), protein L AL541_25010 PF04612 Type II secretion system (T2SS), protein M AL541_25015 PF01203 Type II secretion system (T2SS), protein N AL541_25020 PF00459 Inositol monophosphatase family AL541_25025 PF00293 NUDIX domain AL541_25030 PF01106 NifU-like domain AL541_25030 PF01521 Iron-sulphur cluster biosynthesis AL541_25035 PF00156 Phosphoribosyl transferase domain AL541_25040 PF00561 alpha/beta hydrolase fold AL541_25050 PF16921 Tex protein YqgF-like domain AL541_25050 PF09371 Tex-like protein N-terminal domain AL541_25050 PF00575 S1 RNA binding domain AL541_25050 PF17674 HHH domain AL541_25060 PF03449 Transcription elongation factor, N-terminal AL541_25060 PF01272 Transcription elongation factor, GreA/GreB, C-term AL541_25070 PF00072 Response regulator receiver domain AL541_25070 PF00486 Transcriptional regulatory protein, C terminal AL541_25075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_25075 PF00512 His Kinase A (phospho-acceptor) domain AL541_25075 PF00672 HAMP domain AL541_25080 PF00860 Permease family AL541_25085 PF00270 DEAD/DEAH box helicase AL541_25085 PF00271 Helicase conserved C-terminal domain AL541_25085 PF17191 RecG wedge domain AL541_25090 PF12105 SpoU, rRNA methylase, C-terminal AL541_25090 PF00588 SpoU rRNA Methylase family AL541_25095 PF13291 ACT domain AL541_25095 PF04607 Region found in RelA / SpoT proteins AL541_25095 PF02824 TGS domain AL541_25100 PF01192 RNA polymerase Rpb6 AL541_25105 PF00625 Guanylate kinase AL541_25125 PF02472 Biopolymer transport protein ExbD/TolR AL541_25130 PF01618 MotA/TolQ/ExbB proton channel family AL541_25145 PF07715 TonB-dependent Receptor Plug Domain AL541_25145 PF00593 TonB dependent receptor AL541_25155 PF00528 Binding-protein-dependent transport system inner membrane component AL541_25160 PF00528 Binding-protein-dependent transport system inner membrane component AL541_25160 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_25165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_25170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_25170 PF00005 ABC transporter AL541_25175 PF00005 ABC transporter AL541_25175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_25185 PF08340 Domain of unknown function (DUF1732) AL541_25185 PF03755 YicC-like family, N-terminal region AL541_25195 PF03725 3' exoribonuclease family, domain 2 AL541_25195 PF01138 3' exoribonuclease family, domain 1 AL541_25205 PF03279 Bacterial lipid A biosynthesis acyltransferase AL541_25210 PF00440 Bacterial regulatory proteins, tetR family AL541_25215 PF02441 Flavoprotein AL541_25215 PF04127 DNA / pantothenate metabolism flavoprotein AL541_25225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_25225 PF02743 Cache domain AL541_25225 PF00672 HAMP domain AL541_25230 PF04002 RadC-like JAB domain AL541_25235 PF00830 Ribosomal L28 family AL541_25240 PF00471 Ribosomal protein L33 AL541_25250 PF06827 Zinc finger found in FPG and IleRS AL541_25250 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL541_25250 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL541_25255 PF01467 Cytidylyltransferase-like AL541_25260 PF05686 Glycosyl transferase family 90 AL541_25265 PF00535 Glycosyl transferase family 2 AL541_25270 PF00535 Glycosyl transferase family 2 AL541_25275 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL541_25280 PF01219 Prokaryotic diacylglycerol kinase AL541_25290 PF16363 GDP-mannose 4,6 dehydratase AL541_25295 PF00483 Nucleotidyl transferase AL541_25300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL541_25305 PF00501 AMP-binding enzyme AL541_25305 PF13193 AMP-binding enzyme C-terminal domain AL541_25305 PF00668 Condensation domain AL541_25305 PF00550 Phosphopantetheine attachment site AL541_25305 PF00975 Thioesterase domain AL541_25315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL541_25315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL541_25330 PF00551 Formyl transferase AL541_25330 PF02911 Formyl transferase, C-terminal domain AL541_25340 PF00535 Glycosyl transferase family 2 AL541_25345 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL541_25350 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL541_25355 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) AL541_25360 PF03279 Bacterial lipid A biosynthesis acyltransferase AL541_25365 PF01370 NAD dependent epimerase/dehydratase family AL541_25370 PF06082 Exopolysaccharide biosynthesis protein YbjH AL541_25430 PF00535 Glycosyl transferase family 2 AL541_25440 PF16363 GDP-mannose 4,6 dehydratase AL541_25445 PF01370 NAD dependent epimerase/dehydratase family AL541_25450 PF00293 NUDIX domain AL541_25455 PF01050 Mannose-6-phosphate isomerase AL541_25455 PF00483 Nucleotidyl transferase AL541_25460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_25460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_25460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_25460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_25465 PF01238 Phosphomannose isomerase type I AL541_25470 PF00535 Glycosyl transferase family 2 AL541_25475 PF01370 NAD dependent epimerase/dehydratase family AL541_25480 PF02397 Bacterial sugar transferase AL541_25485 PF02719 Polysaccharide biosynthesis protein AL541_25490 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL541_25490 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL541_25490 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL541_25495 PF00483 Nucleotidyl transferase AL541_25500 PF00753 Metallo-beta-lactamase superfamily AL541_25500 PF10996 Beta-Casp domain AL541_25500 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL541_25505 PF00121 Triosephosphate isomerase