locus-tag class description AL545_00005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_00005 PF03466 LysR substrate binding domain AL545_00015 PF12706 Beta-lactamase superfamily domain AL545_00030 PF18030 RimK PreATP-grasp domain AL545_00030 PF08443 RimK-like ATP-grasp domain AL545_00035 PF08443 RimK-like ATP-grasp domain AL545_00035 PF18030 RimK PreATP-grasp domain AL545_00040 PF00753 Metallo-beta-lactamase superfamily AL545_00045 PF17944 Arginine decarboxylase C-terminal helical extension AL545_00045 PF17810 Arginine decarboxylase helical bundle domain AL545_00045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL545_00050 PF00491 Arginase family AL545_00055 PF07690 Major Facilitator Superfamily AL545_00060 PF00326 Prolyl oligopeptidase family AL545_00060 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL545_00075 PF00950 ABC 3 transport family AL545_00080 PF00005 ABC transporter AL545_00085 PF01297 Zinc-uptake complex component A periplasmic AL545_00125 PF02472 Biopolymer transport protein ExbD/TolR AL545_00130 PF01618 MotA/TolQ/ExbB proton channel family AL545_00135 PF01618 MotA/TolQ/ExbB proton channel family AL545_00145 PF00593 TonB dependent receptor AL545_00145 PF07715 TonB-dependent Receptor Plug Domain AL545_00150 PF16750 Sensor domain of 2-component histidine kinase AL545_00150 PF00672 HAMP domain AL545_00150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_00150 PF00512 His Kinase A (phospho-acceptor) domain AL545_00155 PF00072 Response regulator receiver domain AL545_00155 PF00486 Transcriptional regulatory protein, C terminal AL545_00160 PF03009 Glycerophosphoryl diester phosphodiesterase family AL545_00170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL545_00170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL545_00175 PF10928 Protein of unknown function (DUF2810) AL545_00235 PF04013 Putative SAM-dependent RNA methyltransferase AL545_00240 PF01523 Putative modulator of DNA gyrase AL545_00245 PF01523 Putative modulator of DNA gyrase AL545_00250 PF08543 Phosphomethylpyrimidine kinase AL545_00255 PF00005 ABC transporter AL545_00260 PF00528 Binding-protein-dependent transport system inner membrane component AL545_00265 PF09084 NMT1/THI5 like AL545_00270 PF03070 TENA/THI-4/PQQC family AL545_00275 PF02110 Hydroxyethylthiazole kinase family AL545_00280 PF02581 Thiamine monophosphate synthase AL545_00290 PF00384 Molybdopterin oxidoreductase AL545_00290 PF01568 Molydopterin dinucleotide binding domain AL545_00290 PF18364 Molybdopterin oxidoreductase N-terminal domain AL545_00295 PF03264 NapC/NirT cytochrome c family, N-terminal region AL545_00300 PF13302 Acetyltransferase (GNAT) domain AL545_00320 PF00583 Acetyltransferase (GNAT) family AL545_00340 PF00155 Aminotransferase class I and II AL545_00340 PF00392 Bacterial regulatory proteins, gntR family AL545_00345 PF02595 Glycerate kinase family AL545_00350 PF02447 GntP family permease AL545_00355 PF05651 Putative sugar diacid recognition AL545_00355 PF17853 GGDEF-like domain AL545_00355 PF13556 PucR C-terminal helix-turn-helix domain AL545_00390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL545_00395 PF12706 Beta-lactamase superfamily domain AL545_00405 PF07690 Major Facilitator Superfamily AL545_00410 PF13533 Biotin-lipoyl like AL545_00415 PF03922 OmpW family AL545_00420 PF13599 Pentapeptide repeats (9 copies) AL545_00435 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL545_00435 PF18416 N-acetylglucosamine binding protein domain 2 AL545_00440 PF01037 Lrp/AsnC ligand binding domain AL545_00445 PF01810 LysE type translocator AL545_00450 PF04954 Siderophore-interacting protein AL545_00450 PF08021 Siderophore-interacting FAD-binding domain AL545_00455 PF03466 LysR substrate binding domain AL545_00455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_00460 PF00797 N-acetyltransferase AL545_00465 PF08240 Alcohol dehydrogenase GroES-like domain AL545_00465 PF00107 Zinc-binding dehydrogenase AL545_00470 PF00756 Putative esterase AL545_00480 PF17152 Periplasmic sensor domain AL545_00480 PF00990 Diguanylate cyclase, GGDEF domain AL545_00495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_00495 PF03466 LysR substrate binding domain AL545_00510 PF00849 RNA pseudouridylate synthase AL545_00515 PF01554 MatE AL545_00520 PF00563 EAL domain AL545_00520 PF00990 Diguanylate cyclase, GGDEF domain AL545_00530 PF06865 Pyrimidine/purine nucleoside phosphorylase AL545_00540 PF00704 Glycosyl hydrolases family 18 AL545_00540 PF08329 Chitinase A, N-terminal domain AL545_00545 PF12697 Alpha/beta hydrolase family AL545_00560 PF03600 Citrate transporter AL545_00570 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL545_00580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL545_00580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL545_00585 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL545_00585 PF12833 Helix-turn-helix domain AL545_00585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL545_00585 PF02805 Metal binding domain of Ada AL545_00595 PF07681 DoxX AL545_00600 PF17954 Quercetinase C-terminal cupin domain AL545_00600 PF02678 Pirin AL545_00605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_00605 PF03466 LysR substrate binding domain AL545_00620 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL545_00630 PF03616 Sodium/glutamate symporter AL545_00640 PF00005 ABC transporter AL545_00650 PF03616 Sodium/glutamate symporter AL545_00670 PF17200 Single Cache domain 2 AL545_00670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_00670 PF00672 HAMP domain AL545_00675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL545_00680 PF04397 LytTr DNA-binding domain AL545_00680 PF00072 Response regulator receiver domain AL545_00685 PF06580 Histidine kinase AL545_00685 PF13492 GAF domain AL545_00685 PF07694 5TMR of 5TMR-LYT AL545_00685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_00705 PF00005 ABC transporter AL545_00715 PF01098 Cell cycle protein AL545_00720 PF01709 Transcriptional regulator AL545_00730 PF00072 Response regulator receiver domain AL545_00730 PF01627 Hpt domain AL545_00730 PF00512 His Kinase A (phospho-acceptor) domain AL545_00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_00730 PF17149 Periplasmic sensor domain found in signal transduction proteins AL545_00730 PF00672 HAMP domain AL545_00740 PF08719 Domain of unknown function (DUF1768) AL545_00740 PF00925 GTP cyclohydrolase II AL545_00750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_00750 PF00005 ABC transporter AL545_00755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_00755 PF00005 ABC transporter AL545_00770 PF13614 AAA domain AL545_00770 PF18607 ParA helix turn helix domain AL545_00775 PF02195 ParB-like nuclease domain AL545_00775 PF08775 ParB family AL545_00780 PF13718 GNAT acetyltransferase 2 AL545_00780 PF05127 Helicase AL545_00790 PF00132 Bacterial transferase hexapeptide (six repeats) AL545_00800 PF03575 Peptidase family S51 AL545_00805 PF00267 Gram-negative porin AL545_00810 PF00367 phosphotransferase system, EIIB AL545_00810 PF02378 Phosphotransferase system, EIIC AL545_00815 PF01380 SIS domain AL545_00825 PF01418 Helix-turn-helix domain, rpiR family AL545_00825 PF01380 SIS domain AL545_00830 PF00246 Zinc carboxypeptidase AL545_00835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_00840 PF03358 NADPH-dependent FMN reductase AL545_00860 PF03412 Peptidase C39 family AL545_00860 PF00005 ABC transporter AL545_00860 PF00664 ABC transporter transmembrane region AL545_00875 PF00529 HlyD membrane-fusion protein of T1SS AL545_00880 PF02954 Bacterial regulatory protein, Fis family AL545_00880 PF00072 Response regulator receiver domain AL545_00880 PF00158 Sigma-54 interaction domain AL545_00885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_00885 PF00512 His Kinase A (phospho-acceptor) domain AL545_00885 PF02743 Cache domain AL545_00890 PF01243 Pyridoxamine 5'-phosphate oxidase AL545_00890 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL545_00900 PF12833 Helix-turn-helix domain AL545_00905 PF01619 Proline dehydrogenase AL545_00905 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL545_00905 PF00171 Aldehyde dehydrogenase family AL545_00905 PF14850 DNA-binding domain of Proline dehydrogenase AL545_00915 PF00474 Sodium:solute symporter family AL545_00945 PF01037 Lrp/AsnC ligand binding domain AL545_00955 PF00664 ABC transporter transmembrane region AL545_00955 PF00005 ABC transporter AL545_00965 PF00271 Helicase conserved C-terminal domain AL545_00965 PF00270 DEAD/DEAH box helicase AL545_00970 PF03475 3-alpha domain AL545_00970 PF03473 MOSC domain AL545_00990 PF04542 Sigma-70 region 2 AL545_00990 PF08281 Sigma-70, region 4 AL545_00995 PF12833 Helix-turn-helix domain AL545_00995 PF01965 DJ-1/PfpI family AL545_01005 PF03466 LysR substrate binding domain AL545_01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_01030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_01030 PF13192 Thioredoxin domain AL545_01035 PF00578 AhpC/TSA family AL545_01035 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL545_01040 PF01047 MarR family AL545_01045 PF02566 OsmC-like protein AL545_01080 PF00005 ABC transporter AL545_01100 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL545_01100 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL545_01105 PF06276 Ferric iron reductase FhuF-like transporter AL545_01105 PF04183 IucA / IucC family AL545_01115 PF06276 Ferric iron reductase FhuF-like transporter AL545_01115 PF04183 IucA / IucC family AL545_01120 PF02655 ATP-grasp domain AL545_01120 PF00206 Lyase AL545_01125 PF07715 TonB-dependent Receptor Plug Domain AL545_01125 PF00593 TonB dependent receptor AL545_01130 PF00593 TonB dependent receptor AL545_01130 PF07660 Secretin and TonB N terminus short domain AL545_01130 PF07715 TonB-dependent Receptor Plug Domain AL545_01135 PF01497 Periplasmic binding protein AL545_01140 PF01032 FecCD transport family AL545_01145 PF01032 FecCD transport family AL545_01150 PF00005 ABC transporter AL545_01155 PF00672 HAMP domain AL545_01155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_01155 PF17200 Single Cache domain 2 AL545_01160 PF05193 Peptidase M16 inactive domain AL545_01160 PF00675 Insulinase (Peptidase family M16) AL545_01170 PF04225 Opacity-associated protein A LysM-like domain AL545_01170 PF01551 Peptidase family M23 AL545_01185 PF07690 Major Facilitator Superfamily AL545_01190 PF00239 Resolvase, N terminal domain AL545_01190 PF02796 Helix-turn-helix domain of resolvase AL545_01195 PF00356 Bacterial regulatory proteins, lacI family AL545_01200 PF00474 Sodium:solute symporter family AL545_01215 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL545_01225 PF03480 Bacterial extracellular solute-binding protein, family 7 AL545_01230 PF00356 Bacterial regulatory proteins, lacI family AL545_01235 PF03328 HpcH/HpaI aldolase/citrate lyase family AL545_01255 PF12697 Alpha/beta hydrolase family AL545_01270 PF07690 Major Facilitator Superfamily AL545_01275 PF00474 Sodium:solute symporter family AL545_01280 PF03313 Serine dehydratase alpha chain AL545_01280 PF03315 Serine dehydratase beta chain AL545_01285 PF00128 Alpha amylase, catalytic domain AL545_01285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL545_01290 PF02264 LamB porin AL545_01305 PF00128 Alpha amylase, catalytic domain AL545_01305 PF16657 Maltogenic Amylase, C-terminal domain AL545_01305 PF02903 Alpha amylase, N-terminal ig-like domain AL545_01310 PF04231 Endonuclease I AL545_01315 PF18494 Pullulanase Ins domain AL545_01315 PF03714 Bacterial pullanase-associated domain AL545_01315 PF17967 Pullulanase N2 domain AL545_01315 PF11852 Domain of unknown function (DUF3372) AL545_01315 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL545_01330 PF08543 Phosphomethylpyrimidine kinase AL545_01335 PF00375 Sodium:dicarboxylate symporter family AL545_01340 PF03193 RsgA GTPase AL545_01345 PF02378 Phosphotransferase system, EIIC AL545_01345 PF00367 phosphotransferase system, EIIB AL545_01350 PF02630 SCO1/SenC AL545_01365 PF17874 MalT-like TPR region AL545_01365 PF00196 Bacterial regulatory proteins, luxR family AL545_01370 PF00343 Carbohydrate phosphorylase AL545_01375 PF02446 4-alpha-glucanotransferase AL545_01380 PF02806 Alpha amylase, C-terminal all-beta domain AL545_01380 PF00128 Alpha amylase, catalytic domain AL545_01380 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL545_01385 PF00912 Transglycosylase AL545_01390 PF00128 Alpha amylase, catalytic domain AL545_01405 PF07670 Nucleoside recognition AL545_01410 PF07670 Nucleoside recognition AL545_01415 PF01546 Peptidase family M20/M25/M40 AL545_01415 PF07687 Peptidase dimerisation domain AL545_01420 PF06803 Protein of unknown function (DUF1232) AL545_01425 PF00375 Sodium:dicarboxylate symporter family AL545_01435 PF03466 LysR substrate binding domain AL545_01435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_01440 PF08803 Putative mono-oxygenase ydhR AL545_01450 PF02706 Chain length determinant protein AL545_01450 PF13807 G-rich domain on putative tyrosine kinase AL545_01450 PF13614 AAA domain AL545_01455 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL545_01460 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL545_01460 PF10531 SLBB domain AL545_01460 PF02563 Polysaccharide biosynthesis/export protein AL545_01470 PF00881 Nitroreductase family AL545_01475 PF01914 MarC family integral membrane protein AL545_01480 PF01734 Patatin-like phospholipase AL545_01485 PF18416 N-acetylglucosamine binding protein domain 2 AL545_01485 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL545_01490 PF02469 Fasciclin domain AL545_01495 PF00875 DNA photolyase AL545_01495 PF03441 FAD binding domain of DNA photolyase AL545_01510 PF00561 alpha/beta hydrolase fold AL545_01515 PF00768 D-alanyl-D-alanine carboxypeptidase AL545_01515 PF07943 Penicillin-binding protein 5, C-terminal domain AL545_01520 PF00686 Starch binding domain AL545_01520 PF00128 Alpha amylase, catalytic domain AL545_01525 PF12833 Helix-turn-helix domain AL545_01525 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL545_01530 PF00881 Nitroreductase family AL545_01540 PF03466 LysR substrate binding domain AL545_01540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_01545 PF09905 DNA-binding protein VF530 AL545_01555 PF00175 Oxidoreductase NAD-binding domain AL545_01555 PF00970 Oxidoreductase FAD-binding domain AL545_01565 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL545_01570 PF01594 AI-2E family transporter AL545_01580 PF13533 Biotin-lipoyl like AL545_01605 PF00892 EamA-like transporter family AL545_01610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_01610 PF03466 LysR substrate binding domain AL545_01615 PF07690 Major Facilitator Superfamily AL545_01625 PF00583 Acetyltransferase (GNAT) family AL545_01635 PF00072 Response regulator receiver domain AL545_01635 PF00486 Transcriptional regulatory protein, C terminal AL545_01640 PF00512 His Kinase A (phospho-acceptor) domain AL545_01640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_01640 PF00672 HAMP domain AL545_01655 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL545_01660 PF04055 Radical SAM superfamily AL545_01685 PF08000 Bacterial PH domain AL545_01700 PF00691 OmpA family AL545_01700 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL545_01705 PF01618 MotA/TolQ/ExbB proton channel family AL545_01710 PF04545 Sigma-70, region 4 AL545_01710 PF04542 Sigma-70 region 2 AL545_01715 PF03748 Flagellar basal body-associated protein FliL AL545_01730 PF02561 Flagellar protein FliS AL545_01735 PF07195 Flagellar hook-associated protein 2 C-terminus AL545_01735 PF02465 Flagellar hook-associated protein 2 N-terminus AL545_01735 PF07196 Flagellin hook IN motif AL545_01745 PF00700 Bacterial flagellin C-terminal helical region AL545_01745 PF00669 Bacterial flagellin N-terminal helical region AL545_01755 PF00771 FHIPEP family AL545_01760 PF01312 FlhB HrpN YscU SpaS Family AL545_01765 PF01311 Bacterial export proteins, family 1 AL545_01770 PF01313 Bacterial export proteins, family 3 AL545_01775 PF00813 FliP family AL545_01780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL545_01795 PF02954 Bacterial regulatory protein, Fis family AL545_01795 PF00158 Sigma-54 interaction domain AL545_01795 PF00072 Response regulator receiver domain AL545_01800 PF02049 Flagellar hook-basal body complex protein FliE AL545_01805 PF01514 Secretory protein of YscJ/FliF family AL545_01805 PF08345 Flagellar M-ring protein C-terminal AL545_01810 PF14842 FliG N-terminal domain AL545_01810 PF14841 FliG middle domain AL545_01810 PF01706 FliG C-terminal domain AL545_01820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL545_01820 PF18269 T3SS EscN ATPase C-terminal domain AL545_01835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_01835 PF03466 LysR substrate binding domain AL545_01870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL545_01875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_01875 PF03466 LysR substrate binding domain AL545_01895 PF00486 Transcriptional regulatory protein, C terminal AL545_01895 PF00072 Response regulator receiver domain AL545_01900 PF00512 His Kinase A (phospho-acceptor) domain AL545_01900 PF08448 PAS fold AL545_01900 PF13426 PAS domain AL545_01900 PF00072 Response regulator receiver domain AL545_01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_01905 PF00080 Copper/zinc superoxide dismutase (SODC) AL545_01915 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_01920 PF00563 EAL domain AL545_01920 PF13188 PAS domain AL545_01920 PF03707 Bacterial signalling protein N terminal repeat AL545_01920 PF00990 Diguanylate cyclase, GGDEF domain AL545_01925 PF00155 Aminotransferase class I and II AL545_01930 PF08240 Alcohol dehydrogenase GroES-like domain AL545_01930 PF00107 Zinc-binding dehydrogenase AL545_01960 PF00194 Eukaryotic-type carbonic anhydrase AL545_01965 PF00924 Mechanosensitive ion channel AL545_01975 PF01070 FMN-dependent dehydrogenase AL545_01980 PF02652 L-lactate permease AL545_01985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_01985 PF03466 LysR substrate binding domain AL545_01990 PF00326 Prolyl oligopeptidase family AL545_01990 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL545_01995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_01995 PF00005 ABC transporter AL545_02005 PF05362 Lon protease (S16) C-terminal proteolytic domain AL545_02005 PF13654 AAA domain AL545_02010 PF00672 HAMP domain AL545_02010 PF12729 Four helix bundle sensory module for signal transduction AL545_02010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_02015 PF13609 Gram-negative porin AL545_02020 PF07238 PilZ domain AL545_02020 PF12945 Flagellar protein YcgR AL545_02035 PF00583 Acetyltransferase (GNAT) family AL545_02040 PF12800 4Fe-4S binding domain AL545_02040 PF12838 4Fe-4S dicluster domain AL545_02045 PF13237 4Fe-4S dicluster domain AL545_02045 PF12801 4Fe-4S binding domain AL545_02065 PF00005 ABC transporter AL545_02065 PF12558 ATP-binding cassette cobalt transporter AL545_02070 PF07155 ECF-type riboflavin transporter, S component AL545_02075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_02075 PF00529 HlyD membrane-fusion protein of T1SS AL545_02080 PF11742 Protein of unknown function (DUF3302) AL545_02085 PF00990 Diguanylate cyclase, GGDEF domain AL545_02100 PF01048 Phosphorylase superfamily AL545_02105 PF08349 Protein of unknown function (DUF1722) AL545_02110 PF13411 MerR HTH family regulatory protein AL545_02115 PF00875 DNA photolyase AL545_02115 PF03441 FAD binding domain of DNA photolyase AL545_02120 PF03734 L,D-transpeptidase catalytic domain AL545_02120 PF01476 LysM domain AL545_02120 PF17969 L,D-transpeptidase C-terminal domain AL545_02130 PF00271 Helicase conserved C-terminal domain AL545_02130 PF00270 DEAD/DEAH box helicase AL545_02135 PF00326 Prolyl oligopeptidase family AL545_02135 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL545_02140 PF00593 TonB dependent receptor AL545_02140 PF07715 TonB-dependent Receptor Plug Domain AL545_02160 PF00672 HAMP domain AL545_02160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_02165 PF12849 PBP superfamily domain AL545_02170 PF00528 Binding-protein-dependent transport system inner membrane component AL545_02175 PF00528 Binding-protein-dependent transport system inner membrane component AL545_02180 PF00005 ABC transporter AL545_02195 PF07584 Aerotolerance regulator N-terminal AL545_02195 PF13519 von Willebrand factor type A domain AL545_02200 PF13519 von Willebrand factor type A domain AL545_02210 PF01882 Protein of unknown function DUF58 AL545_02215 PF17863 AAA lid domain AL545_02215 PF07726 ATPase family associated with various cellular activities (AAA) AL545_02220 PF00672 HAMP domain AL545_02220 PF02743 Cache domain AL545_02220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_02230 PF00196 Bacterial regulatory proteins, luxR family AL545_02235 PF00196 Bacterial regulatory proteins, luxR family AL545_02245 PF00005 ABC transporter AL545_02245 PF00664 ABC transporter transmembrane region AL545_02250 PF00529 HlyD membrane-fusion protein of T1SS AL545_02260 PF01032 FecCD transport family AL545_02265 PF01497 Periplasmic binding protein AL545_02270 PF00005 ABC transporter AL545_02275 PF07715 TonB-dependent Receptor Plug Domain AL545_02275 PF00593 TonB dependent receptor AL545_02280 PF00005 ABC transporter AL545_02280 PF00664 ABC transporter transmembrane region AL545_02285 PF00512 His Kinase A (phospho-acceptor) domain AL545_02285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_02290 PF00486 Transcriptional regulatory protein, C terminal AL545_02290 PF00072 Response regulator receiver domain AL545_02295 PF02080 TrkA-C domain AL545_02295 PF02254 TrkA-N domain AL545_02300 PF02386 Cation transport protein AL545_02305 PF03466 LysR substrate binding domain AL545_02305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_02315 PF02028 BCCT, betaine/carnitine/choline family transporter AL545_02320 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL545_02320 PF00355 Rieske [2Fe-2S] domain AL545_02330 PF18113 Rubredoxin binding C-terminal domain AL545_02330 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_02335 PF01266 FAD dependent oxidoreductase AL545_02345 PF00127 Copper binding proteins, plastocyanin/azurin family AL545_02350 PF13419 Haloacid dehalogenase-like hydrolase AL545_02360 PF01590 GAF domain AL545_02360 PF00158 Sigma-54 interaction domain AL545_02365 PF00753 Metallo-beta-lactamase superfamily AL545_02365 PF00301 Rubredoxin AL545_02365 PF00258 Flavodoxin AL545_02370 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_02370 PF18113 Rubredoxin binding C-terminal domain AL545_02380 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL545_02380 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL545_02385 PF06628 Catalase-related immune-responsive AL545_02385 PF00199 Catalase AL545_02390 PF13417 Glutathione S-transferase, N-terminal domain AL545_02395 PF00107 Zinc-binding dehydrogenase AL545_02395 PF16884 N-terminal domain of oxidoreductase AL545_02400 PF16925 Tetracyclin repressor-like, C-terminal domain AL545_02400 PF00440 Bacterial regulatory proteins, tetR family AL545_02435 PF00534 Glycosyl transferases group 1 AL545_02435 PF13439 Glycosyltransferase Family 4 AL545_02445 PF13614 AAA domain AL545_02445 PF02706 Chain length determinant protein AL545_02445 PF13807 G-rich domain on putative tyrosine kinase AL545_02460 PF02397 Bacterial sugar transferase AL545_02465 PF00005 ABC transporter AL545_02465 PF08402 TOBE domain AL545_02470 PF01547 Bacterial extracellular solute-binding protein AL545_02475 PF00528 Binding-protein-dependent transport system inner membrane component AL545_02475 PF14785 Maltose transport system permease protein MalF P2 domain AL545_02480 PF00528 Binding-protein-dependent transport system inner membrane component AL545_02505 PF00005 ABC transporter AL545_02505 PF00664 ABC transporter transmembrane region AL545_02510 PF00664 ABC transporter transmembrane region AL545_02510 PF00005 ABC transporter AL545_02515 PF07715 TonB-dependent Receptor Plug Domain AL545_02515 PF00593 TonB dependent receptor AL545_02520 PF01497 Periplasmic binding protein AL545_02525 PF01032 FecCD transport family AL545_02530 PF01032 FecCD transport family AL545_02540 PF05661 Protein of unknown function (DUF808) AL545_02545 PF01979 Amidohydrolase family AL545_02555 PF01679 Proteolipid membrane potential modulator AL545_02560 PF03476 MOSC N-terminal beta barrel domain AL545_02560 PF03473 MOSC domain AL545_02560 PF03473 MOSC domain AL545_02560 PF03476 MOSC N-terminal beta barrel domain AL545_02560 PF00111 2Fe-2S iron-sulfur cluster binding domain AL545_02560 PF00111 2Fe-2S iron-sulfur cluster binding domain AL545_02565 PF02540 NAD synthase AL545_02570 PF01467 Cytidylyltransferase-like AL545_02610 PF00005 ABC transporter AL545_02615 PF01032 FecCD transport family AL545_02625 PF02472 Biopolymer transport protein ExbD/TolR AL545_02630 PF01618 MotA/TolQ/ExbB proton channel family AL545_02635 PF03544 Gram-negative bacterial TonB protein C-terminal AL545_02640 PF04055 Radical SAM superfamily AL545_02645 PF06228 Haem utilisation ChuX/HutX AL545_02650 PF01243 Pyridoxamine 5'-phosphate oxidase AL545_02660 PF00072 Response regulator receiver domain AL545_02660 PF01584 CheW-like domain AL545_02670 PF01554 MatE AL545_02675 PF00005 ABC transporter AL545_02675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_02680 PF00005 ABC transporter AL545_02680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_02685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_02690 PF00528 Binding-protein-dependent transport system inner membrane component AL545_02695 PF00455 DeoR C terminal sensor domain AL545_02695 PF08220 DeoR-like helix-turn-helix domain AL545_02700 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL545_02700 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL545_02705 PF07005 Sugar-binding N-terminal domain AL545_02705 PF17042 Nucleotide-binding C-terminal domain AL545_02710 PF00596 Class II Aldolase and Adducin N-terminal domain AL545_02715 PF01261 Xylose isomerase-like TIM barrel AL545_02720 PF01370 NAD dependent epimerase/dehydratase family AL545_02725 PF02447 GntP family permease AL545_02730 PF02583 Metal-sensitive transcriptional repressor AL545_02735 PF03824 High-affinity nickel-transport protein AL545_02745 PF00672 HAMP domain AL545_02745 PF02743 Cache domain AL545_02745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_02750 PF03466 LysR substrate binding domain AL545_02750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_02755 PF01039 Carboxyl transferase domain AL545_02755 PF17848 Acetyl-coA carboxylase zinc finger domain AL545_02765 PF04151 Bacterial pre-peptidase C-terminal domain AL545_02765 PF08453 Peptidase family M9 N-terminal AL545_02765 PF01752 Collagenase AL545_02780 PF02627 Carboxymuconolactone decarboxylase family AL545_02785 PF13411 MerR HTH family regulatory protein AL545_02790 PF00128 Alpha amylase, catalytic domain AL545_02810 PF00999 Sodium/hydrogen exchanger family AL545_02810 PF02254 TrkA-N domain AL545_02815 PF02525 Flavodoxin-like fold AL545_02820 PF00582 Universal stress protein family AL545_02825 PF00005 ABC transporter AL545_02825 PF16326 ABC transporter C-terminal domain AL545_02825 PF12848 ABC transporter AL545_02830 PF00326 Prolyl oligopeptidase family AL545_02830 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL545_02840 PF13533 Biotin-lipoyl like AL545_02845 PF00873 AcrB/AcrD/AcrF family AL545_02850 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL545_02860 PF13302 Acetyltransferase (GNAT) domain AL545_02870 PF17151 Periplasmic sensor domain AL545_02870 PF00990 Diguanylate cyclase, GGDEF domain AL545_02885 PF00873 AcrB/AcrD/AcrF family AL545_02890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_02905 PF00384 Molybdopterin oxidoreductase AL545_02905 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL545_02905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL545_02905 PF12838 4Fe-4S dicluster domain AL545_02905 PF01568 Molydopterin dinucleotide binding domain AL545_02920 PF00005 ABC transporter AL545_02930 PF02567 Phenazine biosynthesis-like protein AL545_02935 PF01161 Phosphatidylethanolamine-binding protein AL545_02945 PF01758 Sodium Bile acid symporter family AL545_02960 PF01797 Transposase IS200 like AL545_02965 PF01638 HxlR-like helix-turn-helix AL545_02985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_02985 PF03466 LysR substrate binding domain AL545_02990 PF00248 Aldo/keto reductase family AL545_02995 PF03928 Haem-degrading AL545_03015 PF03222 Tryptophan/tyrosine permease family AL545_03025 PF02743 Cache domain AL545_03025 PF00672 HAMP domain AL545_03025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_03055 PF01551 Peptidase family M23 AL545_03055 PF08525 Opacity-associated protein A N-terminal motif AL545_03055 PF01476 LysM domain AL545_03060 PF08448 PAS fold AL545_03060 PF08447 PAS fold AL545_03060 PF00990 Diguanylate cyclase, GGDEF domain AL545_03060 PF00563 EAL domain AL545_03065 PF03466 LysR substrate binding domain AL545_03065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_03070 PF07690 Major Facilitator Superfamily AL545_03085 PF00462 Glutaredoxin AL545_03090 PF00892 EamA-like transporter family AL545_03095 PF00267 Gram-negative porin AL545_03105 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL545_03125 PF01810 LysE type translocator AL545_03135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL545_03135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL545_03135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL545_03135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL545_03140 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL545_03140 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL545_03145 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL545_03150 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL545_03155 PF00510 Cytochrome c oxidase subunit III AL545_03175 PF02628 Cytochrome oxidase assembly protein AL545_03180 PF01040 UbiA prenyltransferase family AL545_03185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL545_03185 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL545_03195 PF05736 OprF membrane domain AL545_03195 PF00691 OmpA family AL545_03215 PF00313 'Cold-shock' DNA-binding domain AL545_03220 PF03889 Alternative ribosome-rescue factor A AL545_03225 PF00990 Diguanylate cyclase, GGDEF domain AL545_03230 PF04542 Sigma-70 region 2 AL545_03230 PF00140 Sigma-70 factor, region 1.2 AL545_03230 PF04545 Sigma-70, region 4 AL545_03230 PF04539 Sigma-70 region 3 AL545_03240 PF00005 ABC transporter AL545_03245 PF00664 ABC transporter transmembrane region AL545_03245 PF00005 ABC transporter AL545_03250 PF02321 Outer membrane efflux protein AL545_03255 PF00072 Response regulator receiver domain AL545_03255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_03260 PF13533 Biotin-lipoyl like AL545_03280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_03280 PF17200 Single Cache domain 2 AL545_03280 PF00672 HAMP domain AL545_03285 PF00210 Ferritin-like domain AL545_03290 PF01797 Transposase IS200 like AL545_03300 PF07995 Glucose / Sorbosone dehydrogenase AL545_03305 PF00465 Iron-containing alcohol dehydrogenase AL545_03315 PF00892 EamA-like transporter family AL545_03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_03325 PF03466 LysR substrate binding domain AL545_03335 PF13193 AMP-binding enzyme C-terminal domain AL545_03335 PF00501 AMP-binding enzyme AL545_03340 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL545_03345 PF01329 Pterin 4 alpha carbinolamine dehydratase AL545_03365 PF12843 Putative quorum-sensing-regulated virulence factor AL545_03385 PF00271 Helicase conserved C-terminal domain AL545_03385 PF00270 DEAD/DEAH box helicase AL545_03390 PF09905 DNA-binding protein VF530 AL545_03400 PF00291 Pyridoxal-phosphate dependent enzyme AL545_03410 PF00313 'Cold-shock' DNA-binding domain AL545_03420 PF01470 Pyroglutamyl peptidase AL545_03430 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL545_03430 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL545_03435 PF00271 Helicase conserved C-terminal domain AL545_03435 PF00270 DEAD/DEAH box helicase AL545_03455 PF12792 CSS motif domain associated with EAL AL545_03455 PF00563 EAL domain AL545_03460 PF00005 ABC transporter AL545_03465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_03465 PF00672 HAMP domain AL545_03465 PF12729 Four helix bundle sensory module for signal transduction AL545_03480 PF12849 PBP superfamily domain AL545_03490 PF12833 Helix-turn-helix domain AL545_03495 PF08206 Ribonuclease B OB domain AL545_03495 PF00575 S1 RNA binding domain AL545_03495 PF00773 RNB domain AL545_03500 PF00271 Helicase conserved C-terminal domain AL545_03500 PF00270 DEAD/DEAH box helicase AL545_03500 PF03880 DbpA RNA binding domain AL545_03515 PF00871 Acetokinase family AL545_03520 PF03466 LysR substrate binding domain AL545_03520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_03525 PF12146 Serine aminopeptidase, S33 AL545_03530 PF12146 Serine aminopeptidase, S33 AL545_03545 PF01925 Sulfite exporter TauE/SafE AL545_03560 PF01475 Ferric uptake regulator family AL545_03565 PF01979 Amidohydrolase family AL545_03570 PF00132 Bacterial transferase hexapeptide (six repeats) AL545_03575 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL545_03575 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL545_03580 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL545_03585 PF01551 Peptidase family M23 AL545_03585 PF08525 Opacity-associated protein A N-terminal motif AL545_03585 PF01476 LysM domain AL545_03595 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL545_03595 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL545_03600 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL545_03600 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL545_03605 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL545_03615 PF01914 MarC family integral membrane protein AL545_03625 PF13426 PAS domain AL545_03625 PF08447 PAS fold AL545_03625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_03630 PF00528 Binding-protein-dependent transport system inner membrane component AL545_03635 PF00005 ABC transporter AL545_03635 PF00571 CBS domain AL545_03640 PF00528 Binding-protein-dependent transport system inner membrane component AL545_03645 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL545_03650 PF00795 Carbon-nitrogen hydrolase AL545_03660 PF12833 Helix-turn-helix domain AL545_03660 PF01965 DJ-1/PfpI family AL545_03665 PF00561 alpha/beta hydrolase fold AL545_03670 PF04909 Amidohydrolase AL545_03675 PF01565 FAD binding domain AL545_03675 PF13183 4Fe-4S dicluster domain AL545_03675 PF02913 FAD linked oxidases, C-terminal domain AL545_03685 PF00682 HMGL-like AL545_03690 PF00378 Enoyl-CoA hydratase/isomerase AL545_03695 PF01039 Carboxyl transferase domain AL545_03700 PF02770 Acyl-CoA dehydrogenase, middle domain AL545_03700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL545_03700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL545_03705 PF00376 MerR family regulatory protein AL545_03705 PF09278 MerR, DNA binding AL545_03710 PF00108 Thiolase, N-terminal domain AL545_03710 PF02803 Thiolase, C-terminal domain AL545_03715 PF00171 Aldehyde dehydrogenase family AL545_03725 PF00378 Enoyl-CoA hydratase/isomerase AL545_03730 PF00378 Enoyl-CoA hydratase/isomerase AL545_03735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL545_03735 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL545_03745 PF06481 COX Aromatic Rich Motif AL545_03745 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL545_03750 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL545_03755 PF00510 Cytochrome c oxidase subunit III AL545_03765 PF01040 UbiA prenyltransferase family AL545_03770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL545_03770 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_03785 PF00171 Aldehyde dehydrogenase family AL545_03795 PF02028 BCCT, betaine/carnitine/choline family transporter AL545_03825 PF00005 ABC transporter AL545_03830 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_03835 PF00528 Binding-protein-dependent transport system inner membrane component AL545_03840 PF00528 Binding-protein-dependent transport system inner membrane component AL545_03850 PF03466 LysR substrate binding domain AL545_03850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_03855 PF13417 Glutathione S-transferase, N-terminal domain AL545_03855 PF00043 Glutathione S-transferase, C-terminal domain AL545_03865 PF03466 LysR substrate binding domain AL545_03865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_03875 PF00766 Electron transfer flavoprotein FAD-binding domain AL545_03875 PF01012 Electron transfer flavoprotein domain AL545_03880 PF00364 Biotin-requiring enzyme AL545_03880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL545_03880 PF02817 e3 binding domain AL545_03885 PF02779 Transketolase, pyrimidine binding domain AL545_03885 PF02780 Transketolase, C-terminal domain AL545_03890 PF00676 Dehydrogenase E1 component AL545_03905 PF00474 Sodium:solute symporter family AL545_03910 PF02811 PHP domain AL545_03910 PF14579 Helix-hairpin-helix motif AL545_03910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL545_03910 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL545_03910 PF11490 DNA polymerase III polC-type N-terminus II AL545_03910 PF00929 Exonuclease AL545_03915 PF00571 CBS domain AL545_03920 PF07729 FCD domain AL545_03920 PF00392 Bacterial regulatory proteins, gntR family AL545_03925 PF07729 FCD domain AL545_03925 PF00392 Bacterial regulatory proteins, gntR family AL545_03935 PF08787 Alginate lyase AL545_03950 PF08787 Alginate lyase AL545_03955 PF08787 Alginate lyase AL545_03960 PF05426 Alginate lyase AL545_03960 PF07940 Heparinase II/III-like protein AL545_03965 PF05426 Alginate lyase AL545_03965 PF07940 Heparinase II/III-like protein AL545_03970 PF07883 Cupin domain AL545_03975 PF00294 pfkB family carbohydrate kinase AL545_03980 PF01081 KDPG and KHG aldolase AL545_03990 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL545_03990 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL545_04000 PF04314 Copper chaperone PCu(A)C AL545_04030 PF00486 Transcriptional regulatory protein, C terminal AL545_04030 PF00072 Response regulator receiver domain AL545_04050 PF01483 Proprotein convertase P-domain AL545_04050 PF00082 Subtilase family AL545_04060 PF07694 5TMR of 5TMR-LYT AL545_04060 PF00990 Diguanylate cyclase, GGDEF domain AL545_04070 PF03222 Tryptophan/tyrosine permease family AL545_04080 PF01568 Molydopterin dinucleotide binding domain AL545_04080 PF00384 Molybdopterin oxidoreductase AL545_04080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL545_04085 PF14824 Sirohaem biosynthesis protein central AL545_04085 PF10414 Sirohaem synthase dimerisation region AL545_04085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL545_04090 PF02885 Glycosyl transferase family, helical bundle domain AL545_04090 PF00591 Glycosyl transferase family, a/b domain AL545_04095 PF01738 Dienelactone hydrolase family AL545_04100 PF08376 Nitrate and nitrite sensing AL545_04100 PF03861 ANTAR domain AL545_04110 PF00005 ABC transporter AL545_04115 PF00528 Binding-protein-dependent transport system inner membrane component AL545_04120 PF00005 ABC transporter AL545_04125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL545_04125 PF04324 BFD-like [2Fe-2S] binding domain AL545_04125 PF13806 Rieske-like [2Fe-2S] domain AL545_04125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_04125 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL545_04125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL545_04155 PF00072 Response regulator receiver domain AL545_04155 PF00211 Adenylate and Guanylate cyclase catalytic domain AL545_04170 PF03793 PASTA domain AL545_04170 PF00069 Protein kinase domain AL545_04190 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL545_04190 PF00691 OmpA family AL545_04250 PF17871 AAA lid domain AL545_04250 PF07724 AAA domain (Cdc48 subfamily) AL545_04250 PF00004 ATPase family associated with various cellular activities (AAA) AL545_04250 PF10431 C-terminal, D2-small domain, of ClpB protein AL545_04260 PF16671 Actin cross-linking domain AL545_04260 PF04717 Type VI secretion system, phage-baseplate injector AL545_04275 PF12320 Type 5 capsule protein repressor C-terminal domain AL545_04275 PF00149 Calcineurin-like phosphoesterase AL545_04280 PF13476 AAA domain AL545_04290 PF08212 Lipocalin-like domain AL545_04300 PF03606 C4-dicarboxylate anaerobic carrier AL545_04310 PF01212 Beta-eliminating lyase AL545_04320 PF07728 AAA domain (dynein-related subfamily) AL545_04320 PF12592 Protein of unknown function (DUF3763) AL545_04320 PF17868 AAA lid domain AL545_04325 PF05762 VWA domain containing CoxE-like protein AL545_04340 PF03466 LysR substrate binding domain AL545_04340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_04345 PF09330 D-lactate dehydrogenase, membrane binding AL545_04345 PF01565 FAD binding domain AL545_04360 PF01168 Alanine racemase, N-terminal domain AL545_04360 PF00842 Alanine racemase, C-terminal domain AL545_04365 PF00672 HAMP domain AL545_04365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_04380 PF00128 Alpha amylase, catalytic domain AL545_04380 PF09154 Domain of unknown function (DUF1939) AL545_04415 PF00296 Luciferase-like monooxygenase AL545_04420 PF00563 EAL domain AL545_04420 PF00990 Diguanylate cyclase, GGDEF domain AL545_04420 PF03707 Bacterial signalling protein N terminal repeat AL545_04430 PF03707 Bacterial signalling protein N terminal repeat AL545_04430 PF00990 Diguanylate cyclase, GGDEF domain AL545_04430 PF00563 EAL domain AL545_04440 PF14760 Rnk N-terminus AL545_04440 PF01272 Transcription elongation factor, GreA/GreB, C-term AL545_04445 PF04324 BFD-like [2Fe-2S] binding domain AL545_04445 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL545_04445 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_04445 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL545_04445 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL545_04450 PF13806 Rieske-like [2Fe-2S] domain AL545_04455 PF01226 Formate/nitrite transporter AL545_04460 PF14824 Sirohaem biosynthesis protein central AL545_04460 PF10414 Sirohaem synthase dimerisation region AL545_04460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL545_04475 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL545_04490 PF00593 TonB dependent receptor AL545_04490 PF07715 TonB-dependent Receptor Plug Domain AL545_04500 PF13302 Acetyltransferase (GNAT) domain AL545_04505 PF11756 Nitrous oxide-stimulated promoter AL545_04510 PF07690 Major Facilitator Superfamily AL545_04515 PF00085 Thioredoxin AL545_04520 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL545_04520 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL545_04540 PF01238 Phosphomannose isomerase type I AL545_04545 PF07690 Major Facilitator Superfamily AL545_04550 PF07730 Histidine kinase AL545_04550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_04550 PF05231 MASE1 AL545_04555 PF00072 Response regulator receiver domain AL545_04555 PF00196 Bacterial regulatory proteins, luxR family AL545_04560 PF07690 Major Facilitator Superfamily AL545_04565 PF02634 FdhD/NarQ family AL545_04570 PF03466 LysR substrate binding domain AL545_04570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_04580 PF00384 Molybdopterin oxidoreductase AL545_04595 PF02567 Phenazine biosynthesis-like protein AL545_04600 PF01177 Asp/Glu/Hydantoin racemase AL545_04605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_04605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL545_04615 PF04143 Sulphur transport AL545_04635 PF03477 ATP cone domain AL545_04635 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL545_04645 PF01554 MatE AL545_04650 PF12833 Helix-turn-helix domain AL545_04650 PF12852 Cupin AL545_04655 PF00155 Aminotransferase class I and II AL545_04660 PF08443 RimK-like ATP-grasp domain AL545_04660 PF18030 RimK PreATP-grasp domain AL545_04670 PF04076 Bacterial OB fold (BOF) protein AL545_04675 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL545_04675 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL545_04685 PF00528 Binding-protein-dependent transport system inner membrane component AL545_04690 PF00005 ABC transporter AL545_04690 PF03459 TOBE domain AL545_04700 PF00360 Phytochrome region AL545_04700 PF01590 GAF domain AL545_04700 PF00563 EAL domain AL545_04700 PF00990 Diguanylate cyclase, GGDEF domain AL545_04705 PF00072 Response regulator receiver domain AL545_04705 PF00990 Diguanylate cyclase, GGDEF domain AL545_04720 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL545_04720 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL545_04720 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL545_04725 PF02233 NAD(P) transhydrogenase beta subunit AL545_04735 PF00072 Response regulator receiver domain AL545_04735 PF00486 Transcriptional regulatory protein, C terminal AL545_04750 PF03701 Uncharacterised protein family (UPF0181) AL545_04765 PF03466 LysR substrate binding domain AL545_04765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_04785 PF01253 Translation initiation factor SUI1 AL545_04795 PF07478 D-ala D-ala ligase C-terminus AL545_04795 PF01820 D-ala D-ala ligase N-terminus AL545_04800 PF05036 Sporulation related domain AL545_04805 PF00583 Acetyltransferase (GNAT) family AL545_04805 PF13380 CoA binding domain AL545_04805 PF13607 Succinyl-CoA ligase like flavodoxin domain AL545_04810 PF03466 LysR substrate binding domain AL545_04810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_04815 PF00593 TonB dependent receptor AL545_04815 PF04886 PT repeat AL545_04815 PF07715 TonB-dependent Receptor Plug Domain AL545_04825 PF16363 GDP-mannose 4,6 dehydratase AL545_04830 PF00563 EAL domain AL545_04830 PF00990 Diguanylate cyclase, GGDEF domain AL545_04830 PF05231 MASE1 AL545_04830 PF08447 PAS fold AL545_04830 PF08448 PAS fold AL545_04830 PF13426 PAS domain AL545_04835 PF03746 LamB/YcsF family AL545_04840 PF02682 Carboxyltransferase domain, subdomain C and D AL545_04845 PF02626 Carboxyltransferase domain, subdomain A and B AL545_04860 PF00005 ABC transporter AL545_04865 PF13472 GDSL-like Lipase/Acylhydrolase family AL545_04870 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL545_04870 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL545_04870 PF07055 Enoyl reductase FAD binding domain AL545_04875 PF00990 Diguanylate cyclase, GGDEF domain AL545_04875 PF03707 Bacterial signalling protein N terminal repeat AL545_04875 PF13188 PAS domain AL545_04875 PF00563 EAL domain AL545_04885 PF00684 DnaJ central domain AL545_04885 PF00226 DnaJ domain AL545_04885 PF01556 DnaJ C terminal domain AL545_04910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_04910 PF12793 Sugar transport-related sRNA regulator N-term AL545_04920 PF03061 Thioesterase superfamily AL545_04935 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL545_04940 PF12262 Bacterial virulence factor lipase N-terminal AL545_04960 PF03741 Integral membrane protein TerC family AL545_04965 PF00149 Calcineurin-like phosphoesterase AL545_04965 PF02872 5'-nucleotidase, C-terminal domain AL545_04970 PF11398 Protein of unknown function (DUF2813) AL545_04975 PF06496 Protein of unknown function (DUF1097) AL545_04980 PF03466 LysR substrate binding domain AL545_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_04985 PF01226 Formate/nitrite transporter AL545_04990 PF04264 YceI-like domain AL545_04995 PF01292 Prokaryotic cytochrome b561 AL545_05015 PF00270 DEAD/DEAH box helicase AL545_05015 PF00271 Helicase conserved C-terminal domain AL545_05020 PF04336 Acyl carrier protein phosphodiesterase AL545_05030 PF12729 Four helix bundle sensory module for signal transduction AL545_05030 PF00672 HAMP domain AL545_05030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_05040 PF13419 Haloacid dehalogenase-like hydrolase AL545_05055 PF00294 pfkB family carbohydrate kinase AL545_05060 PF01268 Formate--tetrahydrofolate ligase AL545_05065 PF00483 Nucleotidyl transferase AL545_05070 PF06483 Chitinase C AL545_05070 PF00704 Glycosyl hydrolases family 18 AL545_05080 PF06719 AraC-type transcriptional regulator N-terminus AL545_05080 PF12833 Helix-turn-helix domain AL545_05085 PF00465 Iron-containing alcohol dehydrogenase AL545_05095 PF00005 ABC transporter AL545_05100 PF00528 Binding-protein-dependent transport system inner membrane component AL545_05105 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_05110 PF00528 Binding-protein-dependent transport system inner membrane component AL545_05115 PF00989 PAS fold AL545_05115 PF00990 Diguanylate cyclase, GGDEF domain AL545_05115 PF01590 GAF domain AL545_05115 PF00563 EAL domain AL545_05130 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL545_05130 PF00356 Bacterial regulatory proteins, lacI family AL545_05135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL545_05135 PF00381 PTS HPr component phosphorylation site AL545_05140 PF00294 pfkB family carbohydrate kinase AL545_05145 PF02378 Phosphotransferase system, EIIC AL545_05145 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL545_05155 PF00873 AcrB/AcrD/AcrF family AL545_05175 PF01571 Aminomethyltransferase folate-binding domain AL545_05175 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL545_05185 PF00464 Serine hydroxymethyltransferase AL545_05190 PF01597 Glycine cleavage H-protein AL545_05195 PF02347 Glycine cleavage system P-protein AL545_05200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL545_05215 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL545_05215 PF00753 Metallo-beta-lactamase superfamily AL545_05220 PF03466 LysR substrate binding domain AL545_05220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_05225 PF00892 EamA-like transporter family AL545_05230 PF02627 Carboxymuconolactone decarboxylase family AL545_05235 PF12833 Helix-turn-helix domain AL545_05270 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL545_05270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL545_05270 PF14579 Helix-hairpin-helix motif AL545_05270 PF02811 PHP domain AL545_05270 PF00929 Exonuclease AL545_05270 PF11490 DNA polymerase III polC-type N-terminus II AL545_05275 PF00664 ABC transporter transmembrane region AL545_05275 PF00005 ABC transporter AL545_05295 PF02253 Phospholipase A1 AL545_05305 PF00376 MerR family regulatory protein AL545_05305 PF09278 MerR, DNA binding AL545_05310 PF01327 Polypeptide deformylase AL545_05340 PF01769 Divalent cation transporter AL545_05340 PF03448 MgtE intracellular N domain AL545_05340 PF00571 CBS domain AL545_05360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL545_05365 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL545_05375 PF01757 Acyltransferase family AL545_05390 PF00141 Peroxidase AL545_05395 PF13187 4Fe-4S dicluster domain AL545_05395 PF01645 Conserved region in glutamate synthase AL545_05405 PF00171 Aldehyde dehydrogenase family AL545_05420 PF00892 EamA-like transporter family AL545_05425 PF00893 Small Multidrug Resistance protein AL545_05445 PF00892 EamA-like transporter family AL545_05455 PF08334 Type II secretion system (T2SS), protein G AL545_05455 PF07963 Prokaryotic N-terminal methylation motif AL545_05460 PF00072 Response regulator receiver domain AL545_05460 PF01584 CheW-like domain AL545_05470 PF00196 Bacterial regulatory proteins, luxR family AL545_05470 PF00072 Response regulator receiver domain AL545_05480 PF00990 Diguanylate cyclase, GGDEF domain AL545_05485 PF00072 Response regulator receiver domain AL545_05485 PF00196 Bacterial regulatory proteins, luxR family AL545_05490 PF03707 Bacterial signalling protein N terminal repeat AL545_05490 PF00563 EAL domain AL545_05490 PF00990 Diguanylate cyclase, GGDEF domain AL545_05490 PF13188 PAS domain AL545_05495 PF00072 Response regulator receiver domain AL545_05495 PF00512 His Kinase A (phospho-acceptor) domain AL545_05495 PF09456 RcsC Alpha-Beta-Loop (ABL) AL545_05495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_05500 PF01926 50S ribosome-binding GTPase AL545_05505 PF00155 Aminotransferase class I and II AL545_05510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_05510 PF00072 Response regulator receiver domain AL545_05520 PF00814 Glycoprotease family AL545_05520 PF00583 Acetyltransferase (GNAT) family AL545_05530 PF03606 C4-dicarboxylate anaerobic carrier AL545_05545 PF18081 Fanconi anemia-associated nuclease SAP domain AL545_05545 PF08774 VRR-NUC domain AL545_05555 PF04076 Bacterial OB fold (BOF) protein AL545_05560 PF00781 Diacylglycerol kinase catalytic domain AL545_05565 PF03466 LysR substrate binding domain AL545_05565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_05570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL545_05585 PF00092 von Willebrand factor type A domain AL545_05600 PF17863 AAA lid domain AL545_05600 PF07726 ATPase family associated with various cellular activities (AAA) AL545_05605 PF13186 Iron-sulfur cluster-binding domain AL545_05605 PF04055 Radical SAM superfamily AL545_05610 PF00884 Sulfatase AL545_05610 PF16385 Domain of unknown function AL545_05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_05615 PF03466 LysR substrate binding domain AL545_05620 PF00884 Sulfatase AL545_05625 PF00486 Transcriptional regulatory protein, C terminal AL545_05625 PF00072 Response regulator receiver domain AL545_05640 PF00072 Response regulator receiver domain AL545_05640 PF01627 Hpt domain AL545_05640 PF00672 HAMP domain AL545_05640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_05640 PF00512 His Kinase A (phospho-acceptor) domain AL545_05645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL545_05650 PF02142 MGS-like domain AL545_05655 PF13361 UvrD-like helicase C-terminal domain AL545_05655 PF00580 UvrD/REP helicase N-terminal domain AL545_05655 PF12462 DNA helicase IV / RNA helicase N terminal AL545_05660 PF12805 FUSC-like inner membrane protein yccS AL545_05695 PF00593 TonB dependent receptor AL545_05695 PF07715 TonB-dependent Receptor Plug Domain AL545_05705 PF13411 MerR HTH family regulatory protein AL545_05710 PF00005 ABC transporter AL545_05715 PF01032 FecCD transport family AL545_05720 PF01032 FecCD transport family AL545_05725 PF01497 Periplasmic binding protein AL545_05735 PF01048 Phosphorylase superfamily AL545_05740 PF04973 Nicotinamide mononucleotide transporter AL545_05750 PF00356 Bacterial regulatory proteins, lacI family AL545_05755 PF00294 pfkB family carbohydrate kinase AL545_05760 PF13407 Periplasmic binding protein domain AL545_05765 PF02653 Branched-chain amino acid transport system / permease component AL545_05770 PF00005 ABC transporter AL545_05775 PF05025 RbsD / FucU transport protein family AL545_05780 PF00563 EAL domain AL545_05780 PF00990 Diguanylate cyclase, GGDEF domain AL545_05825 PF04116 Fatty acid hydroxylase superfamily AL545_05835 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL545_05835 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL545_05845 PF09308 LuxQ, periplasmic AL545_05845 PF00512 His Kinase A (phospho-acceptor) domain AL545_05845 PF00072 Response regulator receiver domain AL545_05845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_05850 PF03150 Di-haem cytochrome c peroxidase AL545_05850 PF00034 Cytochrome c AL545_05860 PF16200 C-terminal region of band_7 AL545_05860 PF01145 SPFH domain / Band 7 family AL545_05870 PF00881 Nitroreductase family AL545_05875 PF00571 CBS domain AL545_05875 PF00005 ABC transporter AL545_05880 PF00528 Binding-protein-dependent transport system inner membrane component AL545_05885 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL545_05890 PF00732 GMC oxidoreductase AL545_05890 PF05199 GMC oxidoreductase AL545_05895 PF00171 Aldehyde dehydrogenase family AL545_05900 PF00440 Bacterial regulatory proteins, tetR family AL545_05900 PF13977 BetI-type transcriptional repressor, C-terminal AL545_05905 PF00072 Response regulator receiver domain AL545_05905 PF00990 Diguanylate cyclase, GGDEF domain AL545_05915 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL545_05915 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL545_05925 PF00378 Enoyl-CoA hydratase/isomerase AL545_05930 PF02770 Acyl-CoA dehydrogenase, middle domain AL545_05930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL545_05930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL545_05935 PF00171 Aldehyde dehydrogenase family AL545_05940 PF02803 Thiolase, C-terminal domain AL545_05940 PF00108 Thiolase, N-terminal domain AL545_05945 PF00376 MerR family regulatory protein AL545_05945 PF09278 MerR, DNA binding AL545_05950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL545_05950 PF02770 Acyl-CoA dehydrogenase, middle domain AL545_05950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL545_05955 PF01039 Carboxyl transferase domain AL545_05960 PF00378 Enoyl-CoA hydratase/isomerase AL545_05965 PF00289 Biotin carboxylase, N-terminal domain AL545_05965 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL545_05965 PF02785 Biotin carboxylase C-terminal domain AL545_05970 PF00682 HMGL-like AL545_05980 PF12795 Mechanosensitive ion channel porin domain AL545_05980 PF00924 Mechanosensitive ion channel AL545_05980 PF12794 Mechanosensitive ion channel inner membrane domain 1 AL545_05990 PF14602 Hexapeptide repeat of succinyl-transferase AL545_05990 PF12464 Maltose acetyltransferase AL545_05995 PF00155 Aminotransferase class I and II AL545_05995 PF00392 Bacterial regulatory proteins, gntR family AL545_06000 PF01654 Cytochrome bd terminal oxidase subunit I AL545_06005 PF02322 Cytochrome bd terminal oxidase subunit II AL545_06020 PF13419 Haloacid dehalogenase-like hydrolase AL545_06025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_06025 PF03466 LysR substrate binding domain AL545_06030 PF03306 Alpha-acetolactate decarboxylase AL545_06035 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL545_06035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL545_06035 PF00205 Thiamine pyrophosphate enzyme, central domain AL545_06040 PF00106 short chain dehydrogenase AL545_06045 PF05724 Thiopurine S-methyltransferase (TPMT) AL545_06050 PF00501 AMP-binding enzyme AL545_06050 PF14535 AMP-binding enzyme C-terminal domain AL545_06055 PF00005 ABC transporter AL545_06075 PF00501 AMP-binding enzyme AL545_06080 PF00005 ABC transporter AL545_06080 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL545_06095 PF01012 Electron transfer flavoprotein domain AL545_06100 PF00766 Electron transfer flavoprotein FAD-binding domain AL545_06100 PF01012 Electron transfer flavoprotein domain AL545_06105 PF13193 AMP-binding enzyme C-terminal domain AL545_06105 PF00501 AMP-binding enzyme AL545_06110 PF02378 Phosphotransferase system, EIIC AL545_06110 PF00367 phosphotransferase system, EIIB AL545_06115 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL545_06115 PF02056 Family 4 glycosyl hydrolase AL545_06120 PF07702 UTRA domain AL545_06120 PF00392 Bacterial regulatory proteins, gntR family AL545_06125 PF03334 Na+/H+ antiporter subunit AL545_06130 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AL545_06150 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AL545_06150 PF00361 Proton-conducting membrane transporter AL545_06150 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AL545_06150 PF13244 Domain of unknown function (DUF4040) AL545_06160 PF00582 Universal stress protein family AL545_06165 PF00106 short chain dehydrogenase AL545_06170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_06170 PF03466 LysR substrate binding domain AL545_06180 PF07690 Major Facilitator Superfamily AL545_06245 PF01037 Lrp/AsnC ligand binding domain AL545_06280 PF00069 Protein kinase domain AL545_06305 PF04717 Type VI secretion system, phage-baseplate injector AL545_06310 PF05638 Type VI secretion system effector, Hcp AL545_06315 PF10431 C-terminal, D2-small domain, of ClpB protein AL545_06315 PF17871 AAA lid domain AL545_06315 PF07724 AAA domain (Cdc48 subfamily) AL545_06315 PF00004 ATPase family associated with various cellular activities (AAA) AL545_06320 PF00158 Sigma-54 interaction domain AL545_06320 PF02954 Bacterial regulatory protein, Fis family AL545_06320 PF00072 Response regulator receiver domain AL545_06345 PF08525 Opacity-associated protein A N-terminal motif AL545_06345 PF01551 Peptidase family M23 AL545_06345 PF01476 LysM domain AL545_06350 PF00132 Bacterial transferase hexapeptide (six repeats) AL545_06355 PF00144 Beta-lactamase AL545_06360 PF00392 Bacterial regulatory proteins, gntR family AL545_06375 PF01370 NAD dependent epimerase/dehydratase family AL545_06375 PF00551 Formyl transferase AL545_06375 PF02911 Formyl transferase, C-terminal domain AL545_06395 PF01565 FAD binding domain AL545_06395 PF08031 Berberine and berberine like AL545_06405 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AL545_06410 PF00478 IMP dehydrogenase / GMP reductase domain AL545_06415 PF03853 YjeF-related protein N-terminus AL545_06415 PF01256 Carbohydrate kinase AL545_06425 PF00072 Response regulator receiver domain AL545_06430 PF00248 Aldo/keto reductase family AL545_06445 PF00654 Voltage gated chloride channel AL545_06455 PF01227 GTP cyclohydrolase I AL545_06460 PF03454 MoeA C-terminal region (domain IV) AL545_06460 PF00994 Probable molybdopterin binding domain AL545_06460 PF03453 MoeA N-terminal region (domain I and II) AL545_06465 PF00899 ThiF family AL545_06480 PF00581 Rhodanese-like domain AL545_06500 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL545_06505 PF02779 Transketolase, pyrimidine binding domain AL545_06505 PF00456 Transketolase, thiamine diphosphate binding domain AL545_06505 PF02780 Transketolase, C-terminal domain AL545_06510 PF12729 Four helix bundle sensory module for signal transduction AL545_06510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_06510 PF00672 HAMP domain AL545_06515 PF07690 Major Facilitator Superfamily AL545_06520 PF00793 DAHP synthetase I family AL545_06530 PF00691 OmpA family AL545_06530 PF01389 OmpA-like transmembrane domain AL545_06535 PF13419 Haloacid dehalogenase-like hydrolase AL545_06540 PF00472 RF-1 domain AL545_06545 PF00672 HAMP domain AL545_06545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_06545 PF12729 Four helix bundle sensory module for signal transduction AL545_06550 PF00873 AcrB/AcrD/AcrF family AL545_06555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_06560 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL545_06565 PF07687 Peptidase dimerisation domain AL545_06565 PF01546 Peptidase family M20/M25/M40 AL545_06580 PF00196 Bacterial regulatory proteins, luxR family AL545_06580 PF00072 Response regulator receiver domain AL545_06585 PF00672 HAMP domain AL545_06585 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL545_06585 PF07730 Histidine kinase AL545_06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_06590 PF13187 4Fe-4S dicluster domain AL545_06590 PF12838 4Fe-4S dicluster domain AL545_06600 PF01568 Molydopterin dinucleotide binding domain AL545_06600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL545_06600 PF00384 Molybdopterin oxidoreductase AL545_06605 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL545_06610 PF03264 NapC/NirT cytochrome c family, N-terminal region AL545_06620 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL545_06630 PF00108 Thiolase, N-terminal domain AL545_06630 PF02803 Thiolase, C-terminal domain AL545_06635 PF00106 short chain dehydrogenase AL545_06640 PF01810 LysE type translocator AL545_06650 PF07549 SecD/SecF GG Motif AL545_06650 PF02355 Protein export membrane protein AL545_06655 PF07549 SecD/SecF GG Motif AL545_06655 PF13721 SecD export protein N-terminal TM region AL545_06655 PF02355 Protein export membrane protein AL545_06685 PF01037 Lrp/AsnC ligand binding domain AL545_06705 PF00529 HlyD membrane-fusion protein of T1SS AL545_06705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_06710 PF01047 MarR family AL545_06715 PF09308 LuxQ, periplasmic AL545_06715 PF00512 His Kinase A (phospho-acceptor) domain AL545_06715 PF00072 Response regulator receiver domain AL545_06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_06720 PF13407 Periplasmic binding protein domain AL545_06725 PF01541 GIY-YIG catalytic domain AL545_06730 PF04337 Protein of unknown function, DUF480 AL545_06740 PF04363 Protein of unknown function (DUF496) AL545_06745 PF01554 MatE AL545_06750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL545_06750 PF00072 Response regulator receiver domain AL545_06750 PF01627 Hpt domain AL545_06750 PF00512 His Kinase A (phospho-acceptor) domain AL545_06750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_06750 PF00672 HAMP domain AL545_06755 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL545_06755 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL545_06775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_06775 PF03466 LysR substrate binding domain AL545_06790 PF13520 Amino acid permease AL545_06795 PF00155 Aminotransferase class I and II AL545_06795 PF00392 Bacterial regulatory proteins, gntR family AL545_06805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_06805 PF00512 His Kinase A (phospho-acceptor) domain AL545_06805 PF00672 HAMP domain AL545_06805 PF16527 Two-component sensor protein CpxA, periplasmic domain AL545_06810 PF00486 Transcriptional regulatory protein, C terminal AL545_06810 PF00072 Response regulator receiver domain AL545_06825 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL545_06825 PF12833 Helix-turn-helix domain AL545_06835 PF00529 HlyD membrane-fusion protein of T1SS AL545_06835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_06840 PF03109 ABC1 family AL545_06845 PF00571 CBS domain AL545_06845 PF01769 Divalent cation transporter AL545_06845 PF03448 MgtE intracellular N domain AL545_06850 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL545_06855 PF07969 Amidohydrolase family AL545_06860 PF01966 HD domain AL545_06875 PF07690 Major Facilitator Superfamily AL545_06885 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL545_06890 PF00255 Glutathione peroxidase AL545_06905 PF01323 DSBA-like thioredoxin domain AL545_06920 PF00486 Transcriptional regulatory protein, C terminal AL545_06920 PF00072 Response regulator receiver domain AL545_06925 PF16527 Two-component sensor protein CpxA, periplasmic domain AL545_06925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_06925 PF00512 His Kinase A (phospho-acceptor) domain AL545_06925 PF00672 HAMP domain AL545_06935 PF01219 Prokaryotic diacylglycerol kinase AL545_06940 PF08019 Phosphoethanolamine transferase EptA/EptB AL545_06940 PF00884 Sulfatase AL545_06945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL545_06960 PF01734 Patatin-like phospholipase AL545_06965 PF02678 Pirin AL545_06965 PF05726 Pirin C-terminal cupin domain AL545_06970 PF00313 'Cold-shock' DNA-binding domain AL545_06985 PF00962 Adenosine/AMP deaminase AL545_06990 PF00462 Glutaredoxin AL545_06990 PF08534 Redoxin AL545_07000 PF07943 Penicillin-binding protein 5, C-terminal domain AL545_07000 PF00768 D-alanyl-D-alanine carboxypeptidase AL545_07010 PF02798 Glutathione S-transferase, N-terminal domain AL545_07020 PF08244 Glycosyl hydrolases family 32 C terminal AL545_07020 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL545_07025 PF00294 pfkB family carbohydrate kinase AL545_07030 PF00367 phosphotransferase system, EIIB AL545_07030 PF02378 Phosphotransferase system, EIIC AL545_07035 PF00356 Bacterial regulatory proteins, lacI family AL545_07040 PF11471 Maltoporin periplasmic N-terminal extension AL545_07040 PF02264 LamB porin AL545_07050 PF00593 TonB dependent receptor AL545_07050 PF07715 TonB-dependent Receptor Plug Domain AL545_07055 PF03466 LysR substrate binding domain AL545_07055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07065 PF04151 Bacterial pre-peptidase C-terminal domain AL545_07065 PF00082 Subtilase family AL545_07065 PF05922 Peptidase inhibitor I9 AL545_07100 PF00106 short chain dehydrogenase AL545_07105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07105 PF03466 LysR substrate binding domain AL545_07110 PF01497 Periplasmic binding protein AL545_07110 PF12833 Helix-turn-helix domain AL545_07115 PF00155 Aminotransferase class I and II AL545_07145 PF00270 DEAD/DEAH box helicase AL545_07145 PF00271 Helicase conserved C-terminal domain AL545_07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07155 PF03466 LysR substrate binding domain AL545_07160 PF03466 LysR substrate binding domain AL545_07160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL545_07175 PF08240 Alcohol dehydrogenase GroES-like domain AL545_07175 PF00107 Zinc-binding dehydrogenase AL545_07195 PF00392 Bacterial regulatory proteins, gntR family AL545_07195 PF00155 Aminotransferase class I and II AL545_07200 PF00557 Metallopeptidase family M24 AL545_07200 PF01321 Creatinase/Prolidase N-terminal domain AL545_07205 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL545_07210 PF01037 Lrp/AsnC ligand binding domain AL545_07215 PF00171 Aldehyde dehydrogenase family AL545_07220 PF00202 Aminotransferase class-III AL545_07225 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL545_07240 PF03466 LysR substrate binding domain AL545_07240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07250 PF17763 Glutaminase/Asparaginase C-terminal domain AL545_07250 PF00710 Asparaginase, N-terminal AL545_07255 PF03618 Kinase/pyrophosphorylase AL545_07260 PF02896 PEP-utilising enzyme, TIM barrel domain AL545_07260 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL545_07260 PF00391 PEP-utilising enzyme, mobile domain AL545_07270 PF00072 Response regulator receiver domain AL545_07270 PF00196 Bacterial regulatory proteins, luxR family AL545_07275 PF00579 tRNA synthetases class I (W and Y) AL545_07280 PF13416 Bacterial extracellular solute-binding protein AL545_07295 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL545_07295 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL545_07295 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AL545_07295 PF00703 Glycosyl hydrolases family 2 AL545_07300 PF02028 BCCT, betaine/carnitine/choline family transporter AL545_07305 PF00392 Bacterial regulatory proteins, gntR family AL545_07305 PF07702 UTRA domain AL545_07330 PF08402 TOBE domain AL545_07330 PF00005 ABC transporter AL545_07350 PF00873 AcrB/AcrD/AcrF family AL545_07365 PF00873 AcrB/AcrD/AcrF family AL545_07375 PF13091 PLD-like domain AL545_07380 PF00398 Ribosomal RNA adenine dimethylase AL545_07400 PF09278 MerR, DNA binding AL545_07400 PF00376 MerR family regulatory protein AL545_07415 PF03466 LysR substrate binding domain AL545_07415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07425 PF13378 Enolase C-terminal domain-like AL545_07425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL545_07435 PF14492 Elongation Factor G, domain II AL545_07435 PF00009 Elongation factor Tu GTP binding domain AL545_07435 PF03144 Elongation factor Tu domain 2 AL545_07435 PF03764 Elongation factor G, domain IV AL545_07435 PF00679 Elongation factor G C-terminus AL545_07460 PF02001 Protein of unknown function DUF134 AL545_07470 PF00528 Binding-protein-dependent transport system inner membrane component AL545_07475 PF00571 CBS domain AL545_07475 PF00005 ABC transporter AL545_07480 PF17185 NlpE C-terminal OB domain AL545_07480 PF04170 NlpE N-terminal domain AL545_07485 PF06629 MltA-interacting protein MipA AL545_07500 PF03466 LysR substrate binding domain AL545_07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07525 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL545_07525 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL545_07535 PF00857 Isochorismatase family AL545_07550 PF00455 DeoR C terminal sensor domain AL545_07550 PF08220 DeoR-like helix-turn-helix domain AL545_07555 PF01625 Peptide methionine sulfoxide reductase AL545_07555 PF01641 SelR domain AL545_07560 PF03060 Nitronate monooxygenase AL545_07565 PF13520 Amino acid permease AL545_07570 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AL545_07575 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AL545_07580 PF12833 Helix-turn-helix domain AL545_07585 PF00440 Bacterial regulatory proteins, tetR family AL545_07585 PF08359 YsiA-like protein, C-terminal region AL545_07600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07600 PF03466 LysR substrate binding domain AL545_07605 PF01810 LysE type translocator AL545_07615 PF00118 TCP-1/cpn60 chaperonin family AL545_07620 PF00166 Chaperonin 10 Kd subunit AL545_07630 PF00581 Rhodanese-like domain AL545_07645 PF01070 FMN-dependent dehydrogenase AL545_07665 PF00669 Bacterial flagellin N-terminal helical region AL545_07670 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_07670 PF00460 Flagella basal body rod protein AL545_07675 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL545_07675 PF10135 Rod binding protein AL545_07680 PF02119 Flagellar P-ring protein AL545_07685 PF02107 Flagellar L-ring protein AL545_07690 PF00460 Flagella basal body rod protein AL545_07690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_07695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_07695 PF00460 Flagella basal body rod protein AL545_07700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_07700 PF07559 Flagellar basal body protein FlaE AL545_07700 PF00460 Flagella basal body rod protein AL545_07705 PF13860 FlgD Ig-like domain AL545_07705 PF13861 FlgD Tudor-like domain AL545_07705 PF03963 Flagellar hook capping protein - N-terminal region AL545_07710 PF00460 Flagella basal body rod protein AL545_07710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_07715 PF00460 Flagella basal body rod protein AL545_07735 PF01464 Transglycosylase SLT domain AL545_07735 PF01476 LysM domain AL545_07740 PF08264 Anticodon-binding domain of tRNA AL545_07740 PF00133 tRNA synthetases class I (I, L, M and V) AL545_07760 PF03315 Serine dehydratase beta chain AL545_07760 PF03313 Serine dehydratase alpha chain AL545_07770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07770 PF03466 LysR substrate binding domain AL545_07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07775 PF03466 LysR substrate binding domain AL545_07780 PF01389 OmpA-like transmembrane domain AL545_07780 PF00691 OmpA family AL545_07785 PF00246 Zinc carboxypeptidase AL545_07785 PF18027 Cytosolic carboxypeptidase N-terminal domain AL545_07790 PF01266 FAD dependent oxidoreductase AL545_07800 PF04393 Protein of unknown function (DUF535) AL545_07815 PF07702 UTRA domain AL545_07815 PF00392 Bacterial regulatory proteins, gntR family AL545_07820 PF00528 Binding-protein-dependent transport system inner membrane component AL545_07825 PF00005 ABC transporter AL545_07835 PF00266 Aminotransferase class-V AL545_07845 PF13419 Haloacid dehalogenase-like hydrolase AL545_07860 PF00657 GDSL-like Lipase/Acylhydrolase AL545_07865 PF00440 Bacterial regulatory proteins, tetR family AL545_07875 PF02321 Outer membrane efflux protein AL545_07880 PF02687 FtsX-like permease family AL545_07880 PF00005 ABC transporter AL545_07880 PF12704 MacB-like periplasmic core domain AL545_07885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_07890 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL545_07895 PF00194 Eukaryotic-type carbonic anhydrase AL545_07900 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL545_07915 PF13419 Haloacid dehalogenase-like hydrolase AL545_07920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_07920 PF03466 LysR substrate binding domain AL545_07955 PF12464 Maltose acetyltransferase AL545_07955 PF14602 Hexapeptide repeat of succinyl-transferase AL545_07960 PF02566 OsmC-like protein AL545_07965 PF01625 Peptide methionine sulfoxide reductase AL545_07965 PF01641 SelR domain AL545_07980 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL545_07985 PF03441 FAD binding domain of DNA photolyase AL545_07985 PF00875 DNA photolyase AL545_07990 PF00990 Diguanylate cyclase, GGDEF domain AL545_08005 PF00990 Diguanylate cyclase, GGDEF domain AL545_08005 PF05230 MASE2 domain AL545_08020 PF07662 Na+ dependent nucleoside transporter C-terminus AL545_08020 PF07670 Nucleoside recognition AL545_08020 PF01773 Na+ dependent nucleoside transporter N-terminus AL545_08040 PF01212 Beta-eliminating lyase AL545_08045 PF03116 NQR2, RnfD, RnfE family AL545_08050 PF01654 Cytochrome bd terminal oxidase subunit I AL545_08055 PF02322 Cytochrome bd terminal oxidase subunit II AL545_08070 PF01266 FAD dependent oxidoreductase AL545_08090 PF05525 Branched-chain amino acid transport protein AL545_08095 PF00990 Diguanylate cyclase, GGDEF domain AL545_08100 PF02954 Bacterial regulatory protein, Fis family AL545_08100 PF00158 Sigma-54 interaction domain AL545_08100 PF00072 Response regulator receiver domain AL545_08105 PF00512 His Kinase A (phospho-acceptor) domain AL545_08105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_08110 PF00232 Glycosyl hydrolase family 1 AL545_08125 PF00986 DNA gyrase B subunit, carboxyl terminus AL545_08125 PF01751 Toprim domain AL545_08125 PF00204 DNA gyrase B AL545_08125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_08125 PF18053 DNA gyrase B subunit insert domain AL545_08130 PF01797 Transposase IS200 like AL545_08150 PF00011 Hsp20/alpha crystallin family AL545_08155 PF00155 Aminotransferase class I and II AL545_08160 PF00128 Alpha amylase, catalytic domain AL545_08165 PF02092 Glycyl-tRNA synthetase beta subunit AL545_08165 PF05746 DALR anticodon binding domain AL545_08170 PF02091 Glycyl-tRNA synthetase alpha subunit AL545_08175 PF01169 Uncharacterized protein family UPF0016 AL545_08185 PF01206 Sulfurtransferase TusA AL545_08195 PF03466 LysR substrate binding domain AL545_08195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_08200 PF08240 Alcohol dehydrogenase GroES-like domain AL545_08200 PF00107 Zinc-binding dehydrogenase AL545_08205 PF00108 Thiolase, N-terminal domain AL545_08205 PF02803 Thiolase, C-terminal domain AL545_08210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL545_08210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL545_08210 PF00378 Enoyl-CoA hydratase/isomerase AL545_08215 PF01205 Uncharacterized protein family UPF0029 AL545_08215 PF09186 Domain of unknown function (DUF1949) AL545_08220 PF02386 Cation transport protein AL545_08225 PF12724 Flavodoxin domain AL545_08270 PF00394 Multicopper oxidase AL545_08270 PF07731 Multicopper oxidase AL545_08270 PF07732 Multicopper oxidase AL545_08275 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL545_08280 PF13667 ThiC-associated domain AL545_08280 PF01964 Radical SAM ThiC family AL545_08285 PF02581 Thiamine monophosphate synthase AL545_08290 PF00899 ThiF family AL545_08295 PF02597 ThiS family AL545_08300 PF05690 Thiazole biosynthesis protein ThiG AL545_08305 PF06968 Biotin and Thiamin Synthesis associated domain AL545_08305 PF04055 Radical SAM superfamily AL545_08310 PF00557 Metallopeptidase family M24 AL545_08310 PF01321 Creatinase/Prolidase N-terminal domain AL545_08310 PF01321 Creatinase/Prolidase N-terminal domain AL545_08310 PF00557 Metallopeptidase family M24 AL545_08315 PF03466 LysR substrate binding domain AL545_08315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_08320 PF07690 Major Facilitator Superfamily AL545_08340 PF05114 Protein of unknown function (DUF692) AL545_08350 PF13361 UvrD-like helicase C-terminal domain AL545_08350 PF00580 UvrD/REP helicase N-terminal domain AL545_08365 PF01810 LysE type translocator AL545_08375 PF00892 EamA-like transporter family AL545_08380 PF00271 Helicase conserved C-terminal domain AL545_08380 PF00570 HRDC domain AL545_08380 PF09382 RQC domain AL545_08380 PF00270 DEAD/DEAH box helicase AL545_08380 PF16124 RecQ zinc-binding AL545_08395 PF02592 Putative vitamin uptake transporter AL545_08405 PF02541 Ppx/GppA phosphatase family AL545_08410 PF00271 Helicase conserved C-terminal domain AL545_08410 PF00270 DEAD/DEAH box helicase AL545_08415 PF00085 Thioredoxin AL545_08420 PF07497 Rho termination factor, RNA-binding domain AL545_08420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL545_08420 PF07498 Rho termination factor, N-terminal domain AL545_08430 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL545_08435 PF00111 2Fe-2S iron-sulfur cluster binding domain AL545_08440 PF00175 Oxidoreductase NAD-binding domain AL545_08480 PF07219 HemY protein N-terminus AL545_08485 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL545_08490 PF02602 Uroporphyrinogen-III synthase HemD AL545_08495 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL545_08495 PF03900 Porphobilinogen deaminase, C-terminal domain AL545_08500 PF01295 Adenylate cyclase, class-I AL545_08500 PF12633 Adenylate cyclase NT domain AL545_08505 PF01491 Frataxin-like domain AL545_08515 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL545_08515 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL545_08520 PF01678 Diaminopimelate epimerase AL545_08530 PF00589 Phage integrase family AL545_08530 PF02899 Phage integrase, N-terminal SAM-like domain AL545_08535 PF13419 Haloacid dehalogenase-like hydrolase AL545_08540 PF00990 Diguanylate cyclase, GGDEF domain AL545_08540 PF10442 FIST C domain AL545_08540 PF00563 EAL domain AL545_08540 PF08495 FIST N domain AL545_08565 PF12146 Serine aminopeptidase, S33 AL545_08570 PF01810 LysE type translocator AL545_08575 PF00563 EAL domain AL545_08575 PF08668 HDOD domain AL545_08580 PF01022 Bacterial regulatory protein, arsR family AL545_08585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL545_08585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL545_08605 PF10694 Protein of unknown function (DUF2500) AL545_08630 PF01914 MarC family integral membrane protein AL545_08645 PF02881 SRP54-type protein, helical bundle domain AL545_08645 PF00448 SRP54-type protein, GTPase domain AL545_08650 PF00005 ABC transporter AL545_08655 PF18075 FtsX extracellular domain AL545_08660 PF00140 Sigma-70 factor, region 1.2 AL545_08660 PF04545 Sigma-70, region 4 AL545_08660 PF04542 Sigma-70 region 2 AL545_08670 PF00581 Rhodanese-like domain AL545_08675 PF01694 Rhomboid family AL545_08675 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL545_08680 PF03748 Flagellar basal body-associated protein FliL AL545_08685 PF04345 Chorismate lyase AL545_08690 PF01040 UbiA prenyltransferase family AL545_08695 PF01553 Acyltransferase AL545_08705 PF00717 Peptidase S24-like AL545_08705 PF01726 LexA DNA binding domain AL545_08715 PF04072 Leucine carboxyl methyltransferase AL545_08720 PF01554 MatE AL545_08725 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_08725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL545_08730 PF00440 Bacterial regulatory proteins, tetR family AL545_08745 PF12008 Type I restriction and modification enzyme - subunit R C terminal AL545_08745 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL545_08745 PF18766 SWI2/SNF2 ATPase AL545_08760 PF01420 Type I restriction modification DNA specificity domain AL545_08765 PF12161 HsdM N-terminal domain AL545_08765 PF02384 N-6 DNA Methylase AL545_08790 PF06803 Protein of unknown function (DUF1232) AL545_08830 PF05958 tRNA (Uracil-5-)-methyltransferase AL545_08835 PF00593 TonB dependent receptor AL545_08835 PF07715 TonB-dependent Receptor Plug Domain AL545_08845 PF01177 Asp/Glu/Hydantoin racemase AL545_08900 PF13091 PLD-like domain AL545_08910 PF01565 FAD binding domain AL545_08910 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL545_08915 PF02237 Biotin protein ligase C terminal domain AL545_08915 PF03099 Biotin/lipoate A/B protein ligase family AL545_08915 PF08279 HTH domain AL545_08920 PF00485 Phosphoribulokinase / Uridine kinase family AL545_08950 PF03143 Elongation factor Tu C-terminal domain AL545_08950 PF03144 Elongation factor Tu domain 2 AL545_08950 PF00009 Elongation factor Tu GTP binding domain AL545_08960 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL545_08965 PF02357 Transcription termination factor nusG AL545_08965 PF00467 KOW motif AL545_08970 PF00298 Ribosomal protein L11, RNA binding domain AL545_08970 PF03946 Ribosomal protein L11, N-terminal domain AL545_08975 PF00687 Ribosomal protein L1p/L10e family AL545_08980 PF00466 Ribosomal protein L10 AL545_08985 PF00542 Ribosomal protein L7/L12 C-terminal domain AL545_08985 PF16320 Ribosomal protein L7/L12 dimerisation domain AL545_08990 PF04563 RNA polymerase beta subunit AL545_08990 PF04561 RNA polymerase Rpb2, domain 2 AL545_08990 PF04565 RNA polymerase Rpb2, domain 3 AL545_08990 PF10385 RNA polymerase beta subunit external 1 domain AL545_08990 PF04560 RNA polymerase Rpb2, domain 7 AL545_08990 PF00562 RNA polymerase Rpb2, domain 6 AL545_08995 PF04983 RNA polymerase Rpb1, domain 3 AL545_08995 PF04997 RNA polymerase Rpb1, domain 1 AL545_08995 PF00623 RNA polymerase Rpb1, domain 2 AL545_08995 PF05000 RNA polymerase Rpb1, domain 4 AL545_08995 PF04998 RNA polymerase Rpb1, domain 5 AL545_09000 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL545_09005 PF00293 NUDIX domain AL545_09005 PF09297 NADH pyrophosphatase zinc ribbon domain AL545_09010 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL545_09015 PF03167 Uracil DNA glycosylase superfamily AL545_09020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL545_09025 PF04222 Protein of unknown function (DUF416) AL545_09030 PF01595 Cyclin M transmembrane N-terminal domain AL545_09030 PF00571 CBS domain AL545_09035 PF00216 Bacterial DNA-binding protein AL545_09045 PF02844 Phosphoribosylglycinamide synthetase, N domain AL545_09045 PF02843 Phosphoribosylglycinamide synthetase, C domain AL545_09045 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL545_09050 PF01808 AICARFT/IMPCHase bienzyme AL545_09050 PF02142 MGS-like domain AL545_09060 PF13411 MerR HTH family regulatory protein AL545_09065 PF00486 Transcriptional regulatory protein, C terminal AL545_09065 PF18500 CadC C-terminal domain 1 AL545_09075 PF13520 Amino acid permease AL545_09080 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL545_09080 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL545_09080 PF01276 Orn/Lys/Arg decarboxylase, major domain AL545_09145 PF00005 ABC transporter AL545_09145 PF12848 ABC transporter AL545_09155 PF02954 Bacterial regulatory protein, Fis family AL545_09160 PF01207 Dihydrouridine synthase (Dus) AL545_09170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL545_09170 PF00289 Biotin carboxylase, N-terminal domain AL545_09170 PF02785 Biotin carboxylase C-terminal domain AL545_09175 PF00364 Biotin-requiring enzyme AL545_09180 PF01220 Dehydroquinase class II AL545_09185 PF13193 AMP-binding enzyme C-terminal domain AL545_09185 PF00501 AMP-binding enzyme AL545_09185 PF16177 Acetyl-coenzyme A synthetase N-terminus AL545_09200 PF12832 MFS_1 like family AL545_09205 PF00512 His Kinase A (phospho-acceptor) domain AL545_09205 PF09308 LuxQ, periplasmic AL545_09205 PF00072 Response regulator receiver domain AL545_09205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_09210 PF10415 Fumarase C C-terminus AL545_09210 PF00206 Lyase AL545_09225 PF00474 Sodium:solute symporter family AL545_09235 PF00999 Sodium/hydrogen exchanger family AL545_09235 PF03471 Transporter associated domain AL545_09235 PF02080 TrkA-C domain AL545_09240 PF00196 Bacterial regulatory proteins, luxR family AL545_09240 PF00072 Response regulator receiver domain AL545_09245 PF02683 Cytochrome C biogenesis protein transmembrane region AL545_09245 PF11412 Disulphide bond corrector protein DsbC AL545_09250 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL545_09255 PF00206 Lyase AL545_09255 PF10415 Fumarase C C-terminus AL545_09260 PF04186 FxsA cytoplasmic membrane protein AL545_09265 PF00588 SpoU rRNA Methylase family AL545_09270 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL545_09270 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL545_09275 PF00512 His Kinase A (phospho-acceptor) domain AL545_09275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_09275 PF00672 HAMP domain AL545_09275 PF16527 Two-component sensor protein CpxA, periplasmic domain AL545_09280 PF00486 Transcriptional regulatory protein, C terminal AL545_09280 PF00072 Response regulator receiver domain AL545_09285 PF07813 LTXXQ motif family protein AL545_09290 PF01545 Cation efflux family AL545_09290 PF16916 Dimerisation domain of Zinc Transporter AL545_09295 PF00365 Phosphofructokinase AL545_09300 PF01797 Transposase IS200 like AL545_09305 PF01554 MatE AL545_09310 PF00166 Chaperonin 10 Kd subunit AL545_09315 PF00118 TCP-1/cpn60 chaperonin family AL545_09325 PF02308 MgtC family AL545_09330 PF04055 Radical SAM superfamily AL545_09335 PF09285 Elongation factor P, C-terminal AL545_09335 PF08207 Elongation factor P (EF-P) KOW-like domain AL545_09335 PF01132 Elongation factor P (EF-P) OB domain AL545_09345 PF02313 Fumarate reductase subunit D AL545_09350 PF02300 Fumarate reductase subunit C AL545_09355 PF13183 4Fe-4S dicluster domain AL545_09355 PF13085 2Fe-2S iron-sulfur cluster binding domain AL545_09360 PF00890 FAD binding domain AL545_09360 PF02910 Fumarate reductase flavoprotein C-term AL545_09365 PF00152 tRNA synthetases class II (D, K and N) AL545_09375 PF00440 Bacterial regulatory proteins, tetR family AL545_09375 PF08360 QacR-like protein, C-terminal region AL545_09385 PF01551 Peptidase family M23 AL545_09390 PF00132 Bacterial transferase hexapeptide (six repeats) AL545_09390 PF06426 Serine acetyltransferase, N-terminal AL545_09395 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL545_09395 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL545_09400 PF02556 Preprotein translocase subunit SecB AL545_09405 PF00581 Rhodanese-like domain AL545_09410 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL545_09410 PF01676 Metalloenzyme superfamily AL545_09420 PF03600 Citrate transporter AL545_09420 PF02080 TrkA-C domain AL545_09425 PF02666 Phosphatidylserine decarboxylase AL545_09430 PF03193 RsgA GTPase AL545_09435 PF00929 Exonuclease AL545_09500 PF08331 Domain of unknown function (DUF1730) AL545_09510 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL545_09515 PF01520 N-acetylmuramoyl-L-alanine amidase AL545_09520 PF08676 MutL C terminal dimerisation domain AL545_09520 PF01119 DNA mismatch repair protein, C-terminal domain AL545_09530 PF17209 Hfq protein AL545_09535 PF16360 GTP-binding GTPase Middle Region AL545_09535 PF01926 50S ribosome-binding GTPase AL545_09535 PF13167 GTP-binding GTPase N-terminal AL545_09540 PF12221 Bacterial membrane protein N terminal AL545_09540 PF01145 SPFH domain / Band 7 family AL545_09545 PF01145 SPFH domain / Band 7 family AL545_09550 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL545_09555 PF00709 Adenylosuccinate synthetase AL545_09565 PF08238 Sel1 repeat AL545_09570 PF00042 Globin AL545_09570 PF00970 Oxidoreductase FAD-binding domain AL545_09570 PF00175 Oxidoreductase NAD-binding domain AL545_09575 PF02082 Transcriptional regulator AL545_09580 PF17876 Cold shock domain AL545_09580 PF08206 Ribonuclease B OB domain AL545_09580 PF00773 RNB domain AL545_09580 PF08461 Ribonuclease R winged-helix domain AL545_09580 PF00575 S1 RNA binding domain AL545_09585 PF00588 SpoU rRNA Methylase family AL545_09585 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL545_09590 PF13419 Haloacid dehalogenase-like hydrolase AL545_09595 PF00579 tRNA synthetases class I (W and Y) AL545_09610 PF00117 Glutamine amidotransferase class-I AL545_09615 PF00202 Aminotransferase class-III AL545_09620 PF04958 Arginine N-succinyltransferase beta subunit AL545_09625 PF00171 Aldehyde dehydrogenase family AL545_09635 PF13545 Crp-like helix-turn-helix domain AL545_09635 PF00027 Cyclic nucleotide-binding domain AL545_09640 PF00485 Phosphoribulokinase / Uridine kinase family AL545_09645 PF06794 Uncharacterised protein family (UPF0270) AL545_09650 PF00561 alpha/beta hydrolase fold AL545_09660 PF12848 ABC transporter AL545_09660 PF00005 ABC transporter AL545_09665 PF02525 Flavodoxin-like fold AL545_09670 PF02254 TrkA-N domain AL545_09670 PF00999 Sodium/hydrogen exchanger family AL545_09680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL545_09690 PF01112 Asparaginase AL545_09695 PF04102 SlyX AL545_09705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL545_09705 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL545_09710 PF13309 HTH domain AL545_09710 PF08348 YheO-like PAS domain AL545_09715 PF02635 DsrE/DsrF-like family AL545_09720 PF02635 DsrE/DsrF-like family AL545_09725 PF04077 DsrH like protein AL545_09730 PF00164 Ribosomal protein S12/S23 AL545_09735 PF00177 Ribosomal protein S7p/S5e AL545_09740 PF03764 Elongation factor G, domain IV AL545_09740 PF03144 Elongation factor Tu domain 2 AL545_09740 PF14492 Elongation Factor G, domain II AL545_09740 PF00009 Elongation factor Tu GTP binding domain AL545_09740 PF00679 Elongation factor G C-terminus AL545_09745 PF03144 Elongation factor Tu domain 2 AL545_09745 PF03143 Elongation factor Tu C-terminal domain AL545_09745 PF00009 Elongation factor Tu GTP binding domain AL545_09750 PF04324 BFD-like [2Fe-2S] binding domain AL545_09755 PF00210 Ferritin-like domain AL545_09760 PF00390 Malic enzyme, N-terminal domain AL545_09760 PF03949 Malic enzyme, NAD binding domain AL545_09770 PF01053 Cys/Met metabolism PLP-dependent enzyme AL545_09775 PF03447 Homoserine dehydrogenase, NAD binding domain AL545_09775 PF00696 Amino acid kinase family AL545_09775 PF00742 Homoserine dehydrogenase AL545_09780 PF02219 Methylenetetrahydrofolate reductase AL545_09790 PF00311 Phosphoenolpyruvate carboxylase AL545_09795 PF01546 Peptidase family M20/M25/M40 AL545_09795 PF07687 Peptidase dimerisation domain AL545_09800 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL545_09800 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL545_09805 PF00696 Amino acid kinase family AL545_09810 PF00764 Arginosuccinate synthase AL545_09815 PF00206 Lyase AL545_09815 PF00583 Acetyltransferase (GNAT) family AL545_09815 PF14698 Argininosuccinate lyase C-terminal AL545_09825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL545_09825 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_09830 PF08534 Redoxin AL545_09830 PF00462 Glutaredoxin AL545_09835 PF03466 LysR substrate binding domain AL545_09835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_09840 PF17092 Penicillin-binding protein OB-like domain AL545_09840 PF00905 Penicillin binding protein transpeptidase domain AL545_09840 PF00912 Transglycosylase AL545_09865 PF00263 Bacterial type II and III secretion system protein AL545_09865 PF07660 Secretin and TonB N terminus short domain AL545_09865 PF03958 Bacterial type II/III secretion system short domain AL545_09865 PF11741 AMIN domain AL545_09870 PF01202 Shikimate kinase AL545_09875 PF01761 3-dehydroquinate synthase AL545_09885 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL545_09890 PF00834 Ribulose-phosphate 3 epimerase family AL545_09895 PF01250 Ribosomal protein S6 AL545_09900 PF00436 Single-strand binding protein family AL545_09905 PF01084 Ribosomal protein S18 AL545_09910 PF03948 Ribosomal protein L9, C-terminal domain AL545_09910 PF01281 Ribosomal protein L9, N-terminal domain AL545_09920 PF00772 DnaB-like helicase N terminal domain AL545_09920 PF03796 DnaB-like helicase C terminal domain AL545_09925 PF00842 Alanine racemase, C-terminal domain AL545_09925 PF01168 Alanine racemase, N-terminal domain AL545_09930 PF01894 Uncharacterised protein family UPF0047 AL545_09935 PF00342 Phosphoglucose isomerase AL545_09945 PF01475 Ferric uptake regulator family AL545_09950 PF01207 Dihydrouridine synthase (Dus) AL545_09970 PF00258 Flavodoxin AL545_09970 PF00667 FAD binding domain AL545_09970 PF00175 Oxidoreductase NAD-binding domain AL545_09975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL545_09975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL545_09980 PF01507 Phosphoadenosine phosphosulfate reductase family AL545_10040 PF00999 Sodium/hydrogen exchanger family AL545_10045 PF02574 Homocysteine S-methyltransferase AL545_10045 PF00809 Pterin binding enzyme AL545_10045 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL545_10045 PF02607 B12 binding domain AL545_10045 PF02310 B12 binding domain AL545_10050 PF01842 ACT domain AL545_10050 PF00696 Amino acid kinase family AL545_10060 PF00266 Aminotransferase class-V AL545_10070 PF00005 ABC transporter AL545_10070 PF17755 UvrA DNA-binding domain AL545_10070 PF17760 UvrA interaction domain AL545_10075 PF00483 Nucleotidyl transferase AL545_10080 PF00196 Bacterial regulatory proteins, luxR family AL545_10085 PF00436 Single-strand binding protein family AL545_10090 PF00990 Diguanylate cyclase, GGDEF domain AL545_10090 PF00563 EAL domain AL545_10090 PF17157 Gammaproteobacterial periplasmic sensor domain AL545_10110 PF00263 Bacterial type II and III secretion system protein AL545_10110 PF03958 Bacterial type II/III secretion system short domain AL545_10115 PF13401 AAA domain AL545_10115 PF01471 Putative peptidoglycan binding domain AL545_10125 PF00437 Type II/IV secretion system protein AL545_10130 PF00482 Type II secretion system (T2SS), protein F AL545_10140 PF07963 Prokaryotic N-terminal methylation motif AL545_10140 PF00114 Pilin (bacterial filament) AL545_10180 PF04085 rod shape-determining protein MreC AL545_10185 PF04093 rod shape-determining protein MreD AL545_10190 PF02545 Maf-like protein AL545_10195 PF10150 Ribonuclease E/G family AL545_10195 PF00575 S1 RNA binding domain AL545_10200 PF13116 Protein of unknown function AL545_10200 PF13502 AsmA-like C-terminal region AL545_10205 PF00795 Carbon-nitrogen hydrolase AL545_10210 PF01523 Putative modulator of DNA gyrase AL545_10215 PF13638 PIN domain AL545_10215 PF02562 PhoH-like protein AL545_10220 PF00176 SNF2 family N-terminal domain AL545_10220 PF00271 Helicase conserved C-terminal domain AL545_10220 PF18337 RapA N-terminal Tudor like domain AL545_10220 PF12137 RNA polymerase recycling family C-terminal AL545_10220 PF18339 RapA N-terminal Tudor like domain 1 AL545_10230 PF00849 RNA pseudouridylate synthase AL545_10235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL545_10235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL545_10240 PF04751 Protein of unknown function (DUF615) AL545_10245 PF01523 Putative modulator of DNA gyrase AL545_10250 PF00571 CBS domain AL545_10250 PF01769 Divalent cation transporter AL545_10250 PF03448 MgtE intracellular N domain AL545_10255 PF00381 PTS HPr component phosphorylation site AL545_10260 PF03668 P-loop ATPase protein family AL545_10265 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL545_10270 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL545_10275 PF04552 Sigma-54, DNA binding domain AL545_10275 PF04963 Sigma-54 factor, core binding domain AL545_10275 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL545_10280 PF00005 ABC transporter AL545_10280 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL545_10285 PF03968 OstA-like protein AL545_10295 PF01380 SIS domain AL545_10295 PF00571 CBS domain AL545_10300 PF01699 Sodium/calcium exchanger protein AL545_10305 PF00005 ABC transporter AL545_10310 PF02405 Permease MlaE AL545_10315 PF02470 MlaD protein AL545_10320 PF05494 MlaC protein AL545_10330 PF01722 BolA-like protein AL545_10335 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL545_10340 PF01553 Acyltransferase AL545_10345 PF01042 Endoribonuclease L-PSP AL545_10350 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL545_10350 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL545_10355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL545_10355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL545_10365 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL545_10365 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL545_10375 PF06877 Regulator of ribonuclease activity B AL545_10385 PF00583 Acetyltransferase (GNAT) family AL545_10395 PF10458 Valyl tRNA synthetase tRNA binding arm AL545_10395 PF08264 Anticodon-binding domain of tRNA AL545_10395 PF00133 tRNA synthetases class I (I, L, M and V) AL545_10400 PF04364 DNA polymerase III chi subunit, HolC AL545_10405 PF00883 Cytosol aminopeptidase family, catalytic domain AL545_10405 PF02789 Cytosol aminopeptidase family, N-terminal domain AL545_10410 PF03739 Lipopolysaccharide export system permease LptF/LptG AL545_10415 PF03739 Lipopolysaccharide export system permease LptF/LptG AL545_10425 PF10011 Predicted membrane protein (DUF2254) AL545_10440 PF01522 Polysaccharide deacetylase AL545_10445 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL545_10450 PF02378 Phosphotransferase system, EIIC AL545_10455 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL545_10460 PF02056 Family 4 glycosyl hydrolase AL545_10460 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL545_10465 PF04794 YdjC-like protein AL545_10520 PF00171 Aldehyde dehydrogenase family AL545_10555 PF17200 Single Cache domain 2 AL545_10555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_10555 PF00672 HAMP domain AL545_10595 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL545_10595 PF01464 Transglycosylase SLT domain AL545_10600 PF04362 Bacterial Fe(2+) trafficking AL545_10605 PF00730 HhH-GPD superfamily base excision DNA repair protein AL545_10605 PF00633 Helix-hairpin-helix motif AL545_10605 PF14815 NUDIX domain AL545_10610 PF02390 Putative methyltransferase AL545_10615 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL545_10620 PF04960 Glutaminase AL545_10625 PF04055 Radical SAM superfamily AL545_10625 PF06969 HemN C-terminal domain AL545_10630 PF01725 Ham1 family AL545_10640 PF02594 Uncharacterised ACR, YggU family COG1872 AL545_10645 PF02325 YGGT family AL545_10650 PF03807 NADP oxidoreductase coenzyme F420-dependent AL545_10650 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL545_10655 PF01168 Alanine racemase, N-terminal domain AL545_10660 PF00437 Type II/IV secretion system protein AL545_10665 PF00437 Type II/IV secretion system protein AL545_10670 PF03652 Holliday junction resolvase AL545_10675 PF02622 Uncharacterized ACR, COG1678 AL545_10680 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL545_10680 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL545_10685 PF04452 RNA methyltransferase AL545_10690 PF04231 Endonuclease I AL545_10695 PF17283 SprT-like zinc ribbon domain AL545_10695 PF10263 SprT-like family AL545_10705 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL545_10705 PF02772 S-adenosylmethionine synthetase, central domain AL545_10705 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL545_10715 PF00456 Transketolase, thiamine diphosphate binding domain AL545_10715 PF02779 Transketolase, pyrimidine binding domain AL545_10715 PF02780 Transketolase, C-terminal domain AL545_10720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_10720 PF03466 LysR substrate binding domain AL545_10725 PF07715 TonB-dependent Receptor Plug Domain AL545_10725 PF00593 TonB dependent receptor AL545_10730 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL545_10730 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL545_10735 PF00162 Phosphoglycerate kinase AL545_10740 PF01116 Fructose-bisphosphate aldolase class-II AL545_10745 PF00924 Mechanosensitive ion channel AL545_10745 PF05552 Conserved TM helix AL545_10755 PF01810 LysE type translocator AL545_10760 PF03466 LysR substrate binding domain AL545_10760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_10765 PF04402 Protein of unknown function (DUF541) AL545_10770 PF01842 ACT domain AL545_10770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL545_10770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL545_10775 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL545_10780 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL545_10790 PF05164 Cell division protein ZapA AL545_10800 PF03695 Uncharacterised protein family (UPF0149) AL545_10805 PF01494 FAD binding domain AL545_10810 PF01494 FAD binding domain AL545_10830 PF03937 Flavinator of succinate dehydrogenase AL545_10840 PF02910 Fumarate reductase flavoprotein C-term AL545_10840 PF00890 FAD binding domain AL545_10850 PF08281 Sigma-70, region 4 AL545_10850 PF04542 Sigma-70 region 2 AL545_10855 PF03873 Anti sigma-E protein RseA, C-terminal domain AL545_10855 PF03872 Anti sigma-E protein RseA, N-terminal domain AL545_10860 PF17188 MucB/RseB C-terminal domain AL545_10860 PF03888 MucB/RseB N-terminal domain AL545_10870 PF00679 Elongation factor G C-terminus AL545_10870 PF00009 Elongation factor Tu GTP binding domain AL545_10870 PF03144 Elongation factor Tu domain 2 AL545_10870 PF06421 GTP-binding protein LepA C-terminus AL545_10875 PF10502 Signal peptidase, peptidase S26 AL545_10880 PF14622 Ribonuclease-III-like AL545_10880 PF00035 Double-stranded RNA binding motif AL545_10885 PF07650 KH domain AL545_10885 PF01926 50S ribosome-binding GTPase AL545_10890 PF11967 Recombination protein O N terminal AL545_10890 PF02565 Recombination protein O C terminal AL545_10895 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL545_10900 PF01648 4'-phosphopantetheinyl transferase superfamily AL545_10905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_10905 PF01627 Hpt domain AL545_10905 PF00072 Response regulator receiver domain AL545_10905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL545_10905 PF00672 HAMP domain AL545_10905 PF00512 His Kinase A (phospho-acceptor) domain AL545_10915 PF01938 TRAM domain AL545_10915 PF05958 tRNA (Uracil-5-)-methyltransferase AL545_10925 PF13291 ACT domain AL545_10925 PF02824 TGS domain AL545_10925 PF04607 Region found in RelA / SpoT proteins AL545_10930 PF03819 MazG nucleotide pyrophosphohydrolase domain AL545_10935 PF00117 Glutamine amidotransferase class-I AL545_10935 PF06418 CTP synthase N-terminus AL545_10940 PF03952 Enolase, N-terminal domain AL545_10940 PF00113 Enolase, C-terminal TIM barrel domain AL545_10945 PF04977 Septum formation initiator AL545_10950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL545_10955 PF02542 YgbB family AL545_10960 PF01142 tRNA pseudouridine synthase D (TruD) AL545_10965 PF01975 Survival protein SurE AL545_10975 PF01476 LysM domain AL545_10975 PF01551 Peptidase family M23 AL545_10980 PF04545 Sigma-70, region 4 AL545_10980 PF04539 Sigma-70 region 3 AL545_10980 PF00140 Sigma-70 factor, region 1.2 AL545_10980 PF04542 Sigma-70 region 2 AL545_10985 PF01624 MutS domain I AL545_10985 PF00488 MutS domain V AL545_10985 PF05188 MutS domain II AL545_10985 PF05192 MutS domain III AL545_10985 PF05190 MutS family domain IV AL545_10990 PF02464 Competence-damaged protein AL545_10995 PF00154 recA bacterial DNA recombination protein AL545_11000 PF02631 RecX family AL545_11005 PF02272 DHHA1 domain AL545_11005 PF01411 tRNA synthetases class II (A) AL545_11005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL545_11010 PF13840 ACT domain AL545_11010 PF01842 ACT domain AL545_11010 PF00696 Amino acid kinase family AL545_11015 PF02599 Global regulator protein family AL545_11070 PF04277 Oxaloacetate decarboxylase, gamma chain AL545_11075 PF00682 HMGL-like AL545_11075 PF00364 Biotin-requiring enzyme AL545_11075 PF02436 Conserved carboxylase domain AL545_11080 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL545_11090 PF09335 SNARE associated Golgi protein AL545_11095 PF00675 Insulinase (Peptidase family M16) AL545_11095 PF05193 Peptidase M16 inactive domain AL545_11100 PF04262 Glutamate-cysteine ligase AL545_11110 PF02664 S-Ribosylhomocysteinase (LuxS) AL545_11115 PF03471 Transporter associated domain AL545_11115 PF01595 Cyclin M transmembrane N-terminal domain AL545_11115 PF00571 CBS domain AL545_11120 PF01578 Cytochrome C assembly protein AL545_11125 PF00448 SRP54-type protein, GTPase domain AL545_11125 PF02978 Signal peptide binding domain AL545_11125 PF02881 SRP54-type protein, helical bundle domain AL545_11130 PF00886 Ribosomal protein S16 AL545_11135 PF01782 RimM N-terminal domain AL545_11135 PF05239 PRC-barrel domain AL545_11140 PF01746 tRNA (Guanine-1)-methyltransferase AL545_11145 PF01245 Ribosomal protein L19 AL545_11150 PF03884 DNA gyrase inhibitor YacG AL545_11155 PF07072 Cell division protein AL545_11160 PF01121 Dephospho-CoA kinase AL545_11165 PF01478 Type IV leader peptidase family AL545_11165 PF06750 Bacterial Peptidase A24 N-terminal domain AL545_11170 PF00482 Type II secretion system (T2SS), protein F AL545_11175 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL545_11175 PF00437 Type II/IV secretion system protein AL545_11180 PF00114 Pilin (bacterial filament) AL545_11180 PF07963 Prokaryotic N-terminal methylation motif AL545_11185 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL545_11185 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL545_11190 PF01510 N-acetylmuramoyl-L-alanine amidase AL545_11195 PF07729 FCD domain AL545_11195 PF00392 Bacterial regulatory proteins, gntR family AL545_11200 PF00456 Transketolase, thiamine diphosphate binding domain AL545_11200 PF17831 Pyruvate dehydrogenase E1 component middle domain AL545_11205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL545_11205 PF02817 e3 binding domain AL545_11205 PF00364 Biotin-requiring enzyme AL545_11210 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_11210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL545_11215 PF00440 Bacterial regulatory proteins, tetR family AL545_11220 PF00156 Phosphoribosyl transferase domain AL545_11225 PF00484 Carbonic anhydrase AL545_11230 PF01740 STAS domain AL545_11230 PF00916 Sulfate permease family AL545_11235 PF00005 ABC transporter AL545_11240 PF01061 ABC-2 type transporter AL545_11250 PF03279 Bacterial lipid A biosynthesis acyltransferase AL545_11255 PF02569 Pantoate-beta-alanine ligase AL545_11260 PF02548 Ketopantoate hydroxymethyltransferase AL545_11265 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL545_11270 PF01743 Poly A polymerase head domain AL545_11270 PF12627 Probable RNA and SrmB- binding site of polymerase A AL545_11270 PF12626 Polymerase A arginine-rich C-terminus AL545_11275 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL545_11280 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL545_11285 PF17746 SfsA N-terminal OB domain AL545_11285 PF03749 Sugar fermentation stimulation protein RE domain AL545_11290 PF08482 ATP-dependent helicase C-terminal AL545_11290 PF00271 Helicase conserved C-terminal domain AL545_11290 PF04408 Helicase associated domain (HA2) AL545_11290 PF00270 DEAD/DEAH box helicase AL545_11295 PF14814 Bifunctional transglycosylase second domain AL545_11295 PF00912 Transglycosylase AL545_11295 PF00905 Penicillin binding protein transpeptidase domain AL545_11300 PF01734 Patatin-like phospholipase AL545_11305 PF00330 Aconitase family (aconitate hydratase) AL545_11305 PF11791 Aconitate B N-terminal domain AL545_11305 PF06434 Aconitate hydratase 2 N-terminus AL545_11310 PF06062 Uncharacterised protein family (UPF0231) AL545_11315 PF00543 Nitrogen regulatory protein P-II AL545_11320 PF00909 Ammonium Transporter Family AL545_11325 PF13416 Bacterial extracellular solute-binding protein AL545_11335 PF00005 ABC transporter AL545_11335 PF08402 TOBE domain AL545_11340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL545_11340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL545_11340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL545_11340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL545_11345 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL545_11345 PF06165 Glycosyltransferase family 36 AL545_11350 PF02838 Glycosyl hydrolase family 20, domain 2 AL545_11350 PF00728 Glycosyl hydrolase family 20, catalytic domain AL545_11355 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL545_11365 PF00005 ABC transporter AL545_11365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_11370 PF00005 ABC transporter AL545_11370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_11375 PF00528 Binding-protein-dependent transport system inner membrane component AL545_11375 PF12911 N-terminal TM domain of oligopeptide transport permease C AL545_11380 PF00528 Binding-protein-dependent transport system inner membrane component AL545_11385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_11390 PF00072 Response regulator receiver domain AL545_11390 PF09308 LuxQ, periplasmic AL545_11390 PF00512 His Kinase A (phospho-acceptor) domain AL545_11390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_11395 PF08468 Methyltransferase small domain N-terminal AL545_11395 PF05175 Methyltransferase small domain AL545_11400 PF01594 AI-2E family transporter AL545_11405 PF00202 Aminotransferase class-III AL545_11410 PF01521 Iron-sulphur cluster biosynthesis AL545_11420 PF00873 AcrB/AcrD/AcrF family AL545_11425 PF01551 Peptidase family M23 AL545_11425 PF01476 LysM domain AL545_11425 PF08525 Opacity-associated protein A N-terminal motif AL545_11430 PF00579 tRNA synthetases class I (W and Y) AL545_11440 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL545_11445 PF13609 Gram-negative porin AL545_11450 PF03449 Transcription elongation factor, N-terminal AL545_11450 PF01272 Transcription elongation factor, GreA/GreB, C-term AL545_11455 PF01985 CRS1 / YhbY (CRM) domain AL545_11460 PF01728 FtsJ-like methyltransferase AL545_11465 PF00004 ATPase family associated with various cellular activities (AAA) AL545_11465 PF17862 AAA+ lid domain AL545_11465 PF06480 FtsH Extracellular AL545_11465 PF01434 Peptidase family M41 AL545_11470 PF00809 Pterin binding enzyme AL545_11475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL545_11475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL545_11475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL545_11475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL545_11485 PF03840 Preprotein translocase SecG subunit AL545_11500 PF02576 RimP N-terminal domain AL545_11500 PF17384 RimP C-terminal SH3 domain AL545_11505 PF00575 S1 RNA binding domain AL545_11505 PF08529 NusA N-terminal domain AL545_11505 PF13184 NusA-like KH domain AL545_11510 PF00009 Elongation factor Tu GTP binding domain AL545_11510 PF08364 Bacterial translation initiation factor IF-2 associated region AL545_11510 PF04760 Translation initiation factor IF-2, N-terminal region AL545_11510 PF11987 Translation-initiation factor 2 AL545_11515 PF02033 Ribosome-binding factor A AL545_11520 PF09157 Pseudouridine synthase II TruB, C-terminal AL545_11520 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL545_11520 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL545_11525 PF00312 Ribosomal protein S15 AL545_11530 PF00575 S1 RNA binding domain AL545_11530 PF00013 KH domain AL545_11530 PF03725 3' exoribonuclease family, domain 2 AL545_11530 PF01138 3' exoribonuclease family, domain 1 AL545_11530 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL545_11535 PF07719 Tetratricopeptide repeat AL545_11535 PF13181 Tetratricopeptide repeat AL545_11545 PF01554 MatE AL545_11560 PF03707 Bacterial signalling protein N terminal repeat AL545_11560 PF00990 Diguanylate cyclase, GGDEF domain AL545_11560 PF00563 EAL domain AL545_11575 PF13508 Acetyltransferase (GNAT) domain AL545_11595 PF03144 Elongation factor Tu domain 2 AL545_11595 PF16658 Class II release factor RF3, C-terminal domain AL545_11595 PF00009 Elongation factor Tu GTP binding domain AL545_11605 PF01026 TatD related DNase AL545_11610 PF07662 Na+ dependent nucleoside transporter C-terminus AL545_11610 PF07670 Nucleoside recognition AL545_11610 PF01773 Na+ dependent nucleoside transporter N-terminus AL545_11615 PF01791 DeoC/LacD family aldolase AL545_11620 PF00591 Glycosyl transferase family, a/b domain AL545_11620 PF02885 Glycosyl transferase family, helical bundle domain AL545_11620 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL545_11625 PF01676 Metalloenzyme superfamily AL545_11630 PF01048 Phosphorylase superfamily AL545_11640 PF18429 Domain of unknown function (DUF5609) AL545_11650 PF18073 Rubredoxin metal binding domain AL545_11655 PF14492 Elongation Factor G, domain II AL545_11655 PF00679 Elongation factor G C-terminus AL545_11655 PF03764 Elongation factor G, domain IV AL545_11655 PF00009 Elongation factor Tu GTP binding domain AL545_11655 PF03144 Elongation factor Tu domain 2 AL545_11660 PF03466 LysR substrate binding domain AL545_11660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_11670 PF00501 AMP-binding enzyme AL545_11700 PF00196 Bacterial regulatory proteins, luxR family AL545_11710 PF03466 LysR substrate binding domain AL545_11710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_11715 PF00356 Bacterial regulatory proteins, lacI family AL545_11735 PF01797 Transposase IS200 like AL545_11740 PF01544 CorA-like Mg2+ transporter protein AL545_11745 PF01266 FAD dependent oxidoreductase AL545_11745 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL545_11750 PF08220 DeoR-like helix-turn-helix domain AL545_11750 PF00455 DeoR C terminal sensor domain AL545_11755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL545_11755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL545_11760 PF00230 Major intrinsic protein AL545_11770 PF07690 Major Facilitator Superfamily AL545_11775 PF03009 Glycerophosphoryl diester phosphodiesterase family AL545_11780 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL545_11780 PF14602 Hexapeptide repeat of succinyl-transferase AL545_11795 PF07130 YebG protein AL545_11800 PF03466 LysR substrate binding domain AL545_11800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_11810 PF00884 Sulfatase AL545_11810 PF11893 Domain of unknown function (DUF3413) AL545_11815 PF17946 RecC C-terminal domain AL545_11825 PF12705 PD-(D/E)XK nuclease superfamily AL545_11825 PF13361 UvrD-like helicase C-terminal domain AL545_11825 PF00580 UvrD/REP helicase N-terminal domain AL545_11830 PF13538 UvrD-like helicase C-terminal domain AL545_11840 PF00583 Acetyltransferase (GNAT) family AL545_11840 PF00696 Amino acid kinase family AL545_11855 PF06725 3D domain AL545_11855 PF03562 MltA specific insert domain AL545_11860 PF00899 ThiF family AL545_11865 PF02657 Fe-S metabolism associated domain AL545_11870 PF17158 Membrane-associated sensor, integral membrane domain AL545_11870 PF00990 Diguanylate cyclase, GGDEF domain AL545_11875 PF00266 Aminotransferase class-V AL545_11880 PF01965 DJ-1/PfpI family AL545_11885 PF02558 Ketopantoate reductase PanE/ApbA AL545_11885 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL545_11890 PF03502 Nucleoside-specific channel-forming protein, Tsx AL545_11910 PF04542 Sigma-70 region 2 AL545_11910 PF04545 Sigma-70, region 4 AL545_11920 PF07690 Major Facilitator Superfamily AL545_11925 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL545_11930 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL545_11930 PF03923 Uncharacterized lipoprotein AL545_11935 PF05175 Methyltransferase small domain AL545_11940 PF01722 BolA-like protein AL545_11950 PF11973 NQRA C-terminal domain AL545_11950 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL545_11955 PF03116 NQR2, RnfD, RnfE family AL545_11960 PF04205 FMN-binding domain AL545_11965 PF02508 Rnf-Nqr subunit, membrane protein AL545_11970 PF02508 Rnf-Nqr subunit, membrane protein AL545_11975 PF00970 Oxidoreductase FAD-binding domain AL545_11975 PF00111 2Fe-2S iron-sulfur cluster binding domain AL545_11975 PF00175 Oxidoreductase NAD-binding domain AL545_11980 PF02424 ApbE family AL545_11990 PF00072 Response regulator receiver domain AL545_11990 PF00990 Diguanylate cyclase, GGDEF domain AL545_12000 PF11798 IMS family HHH motif AL545_12000 PF11799 impB/mucB/samB family C-terminal domain AL545_12000 PF00817 impB/mucB/samB family AL545_12005 PF00270 DEAD/DEAH box helicase AL545_12005 PF00271 Helicase conserved C-terminal domain AL545_12005 PF00570 HRDC domain AL545_12005 PF16124 RecQ zinc-binding AL545_12005 PF09382 RQC domain AL545_12010 PF01272 Transcription elongation factor, GreA/GreB, C-term AL545_12010 PF03449 Transcription elongation factor, N-terminal AL545_12020 PF00704 Glycosyl hydrolases family 18 AL545_12020 PF06483 Chitinase C AL545_12025 PF00209 Sodium:neurotransmitter symporter family AL545_12035 PF06786 Uncharacterised protein family (UPF0253) AL545_12045 PF03129 Anticodon binding domain AL545_12045 PF04073 Aminoacyl-tRNA editing domain AL545_12045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL545_12050 PF18389 TrmO C-terminal domain AL545_12050 PF01980 tRNA-methyltransferase O AL545_12055 PF01197 Ribosomal protein L31 AL545_12060 PF00444 Ribosomal protein L36 AL545_12065 PF03806 AbgT putative transporter family AL545_12090 PF01370 NAD dependent epimerase/dehydratase family AL545_12095 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL545_12095 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL545_12100 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL545_12125 PF00849 RNA pseudouridylate synthase AL545_12125 PF04287 tRNA pseudouridine synthase C AL545_12130 PF00849 RNA pseudouridylate synthase AL545_12135 PF11944 Protein of unknown function (DUF3461) AL545_12140 PF01842 ACT domain AL545_12140 PF08335 GlnD PII-uridylyltransferase AL545_12140 PF01966 HD domain AL545_12140 PF01909 Nucleotidyltransferase domain AL545_12145 PF00557 Metallopeptidase family M24 AL545_12150 PF00318 Ribosomal protein S2 AL545_12155 PF00889 Elongation factor TS AL545_12160 PF00696 Amino acid kinase family AL545_12165 PF01765 Ribosome recycling factor AL545_12170 PF01255 Putative undecaprenyl diphosphate synthase AL545_12180 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL545_12180 PF13288 DXP reductoisomerase C-terminal domain AL545_12180 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL545_12185 PF17820 PDZ domain AL545_12185 PF02163 Peptidase family M50 AL545_12190 PF01103 Surface antigen AL545_12190 PF07244 Surface antigen variable number repeat AL545_12195 PF03938 Outer membrane protein (OmpH-like) AL545_12200 PF00132 Bacterial transferase hexapeptide (six repeats) AL545_12200 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL545_12205 PF07977 FabA-like domain AL545_12210 PF00132 Bacterial transferase hexapeptide (six repeats) AL545_12210 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL545_12215 PF02684 Lipid-A-disaccharide synthetase AL545_12220 PF01351 Ribonuclease HII AL545_12225 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL545_12225 PF14579 Helix-hairpin-helix motif AL545_12225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL545_12225 PF02811 PHP domain AL545_12225 PF01336 OB-fold nucleic acid binding domain AL545_12230 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL545_12235 PF01171 PP-loop family AL545_12235 PF09179 TilS substrate binding domain AL545_12235 PF11734 TilS substrate C-terminal domain AL545_12240 PF00034 Cytochrome c AL545_12245 PF00543 Nitrogen regulatory protein P-II AL545_12250 PF03372 Endonuclease/Exonuclease/phosphatase family AL545_12260 PF01476 LysM domain AL545_12260 PF01464 Transglycosylase SLT domain AL545_12265 PF00753 Metallo-beta-lactamase superfamily AL545_12265 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL545_12270 PF08241 Methyltransferase domain AL545_12275 PF00075 RNase H AL545_12280 PF00929 Exonuclease AL545_12305 PF01740 STAS domain AL545_12305 PF00916 Sulfate permease family AL545_12310 PF09317 Domain of unknown function (DUF1974) AL545_12310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL545_12310 PF02770 Acyl-CoA dehydrogenase, middle domain AL545_12310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL545_12315 PF13580 SIS domain AL545_12320 PF13230 Glutamine amidotransferases class-II AL545_12325 PF00551 Formyl transferase AL545_12330 PF02769 AIR synthase related protein, C-terminal domain AL545_12330 PF00586 AIR synthase related protein, N-terminal domain AL545_12340 PF00860 Permease family AL545_12360 PF01435 Peptidase family M48 AL545_12360 PF13181 Tetratricopeptide repeat AL545_12370 PF01594 AI-2E family transporter AL545_12375 PF00578 AhpC/TSA family AL545_12385 PF00701 Dihydrodipicolinate synthetase family AL545_12405 PF01546 Peptidase family M20/M25/M40 AL545_12405 PF07687 Peptidase dimerisation domain AL545_12410 PF03960 ArsC family AL545_12430 PF11143 Protein of unknown function (DUF2919) AL545_12435 PF04261 Dyp-type peroxidase family AL545_12440 PF00700 Bacterial flagellin C-terminal helical region AL545_12440 PF00669 Bacterial flagellin N-terminal helical region AL545_12440 PF07196 Flagellin hook IN motif AL545_12450 PF00700 Bacterial flagellin C-terminal helical region AL545_12450 PF00669 Bacterial flagellin N-terminal helical region AL545_12450 PF07196 Flagellin hook IN motif AL545_12455 PF00669 Bacterial flagellin N-terminal helical region AL545_12455 PF07196 Flagellin hook IN motif AL545_12455 PF00700 Bacterial flagellin C-terminal helical region AL545_12460 PF03646 FlaG protein AL545_12465 PF02465 Flagellar hook-associated protein 2 N-terminus AL545_12465 PF07195 Flagellar hook-associated protein 2 C-terminus AL545_12465 PF07196 Flagellin hook IN motif AL545_12475 PF02561 Flagellar protein FliS AL545_12480 PF02954 Bacterial regulatory protein, Fis family AL545_12480 PF00072 Response regulator receiver domain AL545_12480 PF00158 Sigma-54 interaction domain AL545_12485 PF00512 His Kinase A (phospho-acceptor) domain AL545_12485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_12490 PF00072 Response regulator receiver domain AL545_12490 PF02954 Bacterial regulatory protein, Fis family AL545_12490 PF00158 Sigma-54 interaction domain AL545_12495 PF02049 Flagellar hook-basal body complex protein FliE AL545_12500 PF08345 Flagellar M-ring protein C-terminal AL545_12500 PF01514 Secretory protein of YscJ/FliF family AL545_12505 PF14841 FliG middle domain AL545_12505 PF01706 FliG C-terminal domain AL545_12505 PF14842 FliG N-terminal domain AL545_12515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL545_12515 PF18269 T3SS EscN ATPase C-terminal domain AL545_12540 PF02154 Flagellar motor switch protein FliM AL545_12540 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL545_12545 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL545_12550 PF04347 Flagellar biosynthesis protein, FliO AL545_12555 PF00813 FliP family AL545_12560 PF01313 Bacterial export proteins, family 3 AL545_12565 PF01311 Bacterial export proteins, family 1 AL545_12570 PF01312 FlhB HrpN YscU SpaS Family AL545_12575 PF00771 FHIPEP family AL545_12580 PF00448 SRP54-type protein, GTPase domain AL545_12585 PF10609 NUBPL iron-transfer P-loop NTPase AL545_12590 PF04542 Sigma-70 region 2 AL545_12590 PF04539 Sigma-70 region 3 AL545_12590 PF04545 Sigma-70, region 4 AL545_12595 PF00072 Response regulator receiver domain AL545_12600 PF04344 Chemotaxis phosphatase, CheZ AL545_12605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_12605 PF01584 CheW-like domain AL545_12605 PF01627 Hpt domain AL545_12605 PF07194 P2 response regulator binding domain AL545_12605 PF02895 Signal transducing histidine kinase, homodimeric domain AL545_12610 PF00072 Response regulator receiver domain AL545_12610 PF01339 CheB methylesterase AL545_12615 PF13614 AAA domain AL545_12625 PF01584 CheW-like domain AL545_12635 PF00005 ABC transporter AL545_12640 PF03379 CcmB protein AL545_12645 PF01578 Cytochrome C assembly protein AL545_12650 PF04995 Heme exporter protein D (CcmD) AL545_12655 PF03100 CcmE AL545_12660 PF01578 Cytochrome C assembly protein AL545_12660 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL545_12665 PF08534 Redoxin AL545_12670 PF03918 Cytochrome C biogenesis protein AL545_12675 PF03918 Cytochrome C biogenesis protein AL545_12680 PF04333 MlaA lipoprotein AL545_12685 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL545_12690 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL545_12700 PF04542 Sigma-70 region 2 AL545_12700 PF08281 Sigma-70, region 4 AL545_12710 PF02803 Thiolase, C-terminal domain AL545_12710 PF00108 Thiolase, N-terminal domain AL545_12715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL545_12715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL545_12715 PF00378 Enoyl-CoA hydratase/isomerase AL545_12725 PF00675 Insulinase (Peptidase family M16) AL545_12725 PF05193 Peptidase M16 inactive domain AL545_12725 PF16187 Middle or third domain of peptidase_M16 AL545_12730 PF00300 Histidine phosphatase superfamily (branch 1) AL545_12735 PF01713 Smr domain AL545_12740 PF05175 Methyltransferase small domain AL545_12745 PF01264 Chorismate synthase AL545_12750 PF03458 UPF0126 domain AL545_12760 PF04315 Elongation factor P hydroxylase AL545_12765 PF08891 YfcL protein AL545_12775 PF03358 NADPH-dependent FMN reductase AL545_12780 PF01266 FAD dependent oxidoreductase AL545_12780 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL545_12785 PF00109 Beta-ketoacyl synthase, N-terminal domain AL545_12785 PF02801 Beta-ketoacyl synthase, C-terminal domain AL545_12795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL545_12795 PF11890 Domain of unknown function (DUF3410) AL545_12795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL545_12800 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL545_12800 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL545_12810 PF01416 tRNA pseudouridine synthase AL545_12820 PF17848 Acetyl-coA carboxylase zinc finger domain AL545_12820 PF01039 Carboxyl transferase domain AL545_12825 PF02875 Mur ligase family, glutamate ligase domain AL545_12825 PF08245 Mur ligase middle domain AL545_12830 PF05036 Sporulation related domain AL545_12835 PF02674 Colicin V production protein AL545_12840 PF00156 Phosphoribosyl transferase domain AL545_12845 PF03466 LysR substrate binding domain AL545_12845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_12850 PF00072 Response regulator receiver domain AL545_12860 PF04304 Protein of unknown function (DUF454) AL545_12865 PF00156 Phosphoribosyl transferase domain AL545_12870 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL545_12870 PF12169 DNA polymerase III subunits gamma and tau domain III AL545_12870 PF12170 DNA polymerase III tau subunit V interacting with alpha AL545_12875 PF02575 YbaB/EbfC DNA-binding family AL545_12880 PF02132 RecR protein AL545_12880 PF13662 Toprim domain AL545_12885 PF00230 Major intrinsic protein AL545_12890 PF03692 Putative zinc- or iron-chelating domain AL545_12895 PF04226 Transglycosylase associated protein AL545_12900 PF03692 Putative zinc- or iron-chelating domain AL545_12905 PF05552 Conserved TM helix AL545_12905 PF00924 Mechanosensitive ion channel AL545_12910 PF03992 Antibiotic biosynthesis monooxygenase AL545_12915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL545_12925 PF00245 Alkaline phosphatase AL545_12945 PF13847 Methyltransferase domain AL545_12950 PF08447 PAS fold AL545_12950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_12950 PF13426 PAS domain AL545_12955 PF01263 Aldose 1-epimerase AL545_12960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL545_12960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL545_12965 PF01641 SelR domain AL545_12975 PF07023 Protein of unknown function (DUF1315) AL545_12980 PF17763 Glutaminase/Asparaginase C-terminal domain AL545_12980 PF00710 Asparaginase, N-terminal AL545_12985 PF01343 Peptidase family S49 AL545_12990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL545_12990 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_13000 PF00881 Nitroreductase family AL545_13005 PF01751 Toprim domain AL545_13005 PF01131 DNA topoisomerase AL545_13015 PF00106 short chain dehydrogenase AL545_13020 PF00850 Histone deacetylase domain AL545_13030 PF11893 Domain of unknown function (DUF3413) AL545_13030 PF00884 Sulfatase AL545_13035 PF07208 Protein of unknown function (DUF1414) AL545_13040 PF04245 37-kD nucleoid-associated bacterial protein AL545_13055 PF03553 Na+/H+ antiporter family AL545_13060 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL545_13060 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL545_13065 PF00027 Cyclic nucleotide-binding domain AL545_13065 PF00520 Ion transport protein AL545_13070 PF01914 MarC family integral membrane protein AL545_13075 PF00171 Aldehyde dehydrogenase family AL545_13075 PF00465 Iron-containing alcohol dehydrogenase AL545_13095 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL545_13095 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL545_13100 PF00462 Glutaredoxin AL545_13115 PF00589 Phage integrase family AL545_13115 PF02899 Phage integrase, N-terminal SAM-like domain AL545_13150 PF06892 Phage regulatory protein CII (CP76) AL545_13340 PF03553 Na+/H+ antiporter family AL545_13340 PF13726 Na+-H+ antiporter family AL545_13345 PF00929 Exonuclease AL545_13355 PF18393 MotY N-terminal domain AL545_13355 PF00691 OmpA family AL545_13360 PF10952 Protein of unknown function (DUF2753) AL545_13365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL545_13370 PF00633 Helix-hairpin-helix motif AL545_13370 PF10576 Iron-sulfur binding domain of endonuclease III AL545_13370 PF00730 HhH-GPD superfamily base excision DNA repair protein AL545_13375 PF02508 Rnf-Nqr subunit, membrane protein AL545_13380 PF04205 FMN-binding domain AL545_13385 PF03116 NQR2, RnfD, RnfE family AL545_13390 PF13375 RnfC Barrel sandwich hybrid domain AL545_13390 PF10531 SLBB domain AL545_13390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL545_13390 PF12838 4Fe-4S dicluster domain AL545_13395 PF04060 Putative Fe-S cluster AL545_13400 PF02508 Rnf-Nqr subunit, membrane protein AL545_13405 PF01228 Glycine radical AL545_13405 PF02901 Pyruvate formate lyase-like AL545_13415 PF17757 UvrB interaction domain AL545_13415 PF02151 UvrB/uvrC motif AL545_13415 PF12344 Ultra-violet resistance protein B AL545_13415 PF04851 Type III restriction enzyme, res subunit AL545_13415 PF00271 Helicase conserved C-terminal domain AL545_13420 PF02954 Bacterial regulatory protein, Fis family AL545_13420 PF00072 Response regulator receiver domain AL545_13420 PF00158 Sigma-54 interaction domain AL545_13425 PF01627 Hpt domain AL545_13430 PF01933 Uncharacterised protein family UPF0052 AL545_13435 PF04055 Radical SAM superfamily AL545_13435 PF06463 Molybdenum Cofactor Synthesis C AL545_13440 PF00994 Probable molybdopterin binding domain AL545_13445 PF01967 MoaC family AL545_13450 PF02597 ThiS family AL545_13455 PF02391 MoaE protein AL545_13460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_13465 PF00528 Binding-protein-dependent transport system inner membrane component AL545_13470 PF12911 N-terminal TM domain of oligopeptide transport permease C AL545_13470 PF00528 Binding-protein-dependent transport system inner membrane component AL545_13475 PF00005 ABC transporter AL545_13475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_13480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_13480 PF00005 ABC transporter AL545_13485 PF13409 Glutathione S-transferase, N-terminal domain AL545_13495 PF01515 Phosphate acetyl/butaryl transferase AL545_13495 PF07085 DRTGG domain AL545_13500 PF00871 Acetokinase family AL545_13505 PF04217 Protein of unknown function, DUF412 AL545_13515 PF02653 Branched-chain amino acid transport system / permease component AL545_13520 PF00005 ABC transporter AL545_13525 PF00128 Alpha amylase, catalytic domain AL545_13525 PF02903 Alpha amylase, N-terminal ig-like domain AL545_13530 PF17158 Membrane-associated sensor, integral membrane domain AL545_13530 PF00990 Diguanylate cyclase, GGDEF domain AL545_13535 PF01207 Dihydrouridine synthase (Dus) AL545_13540 PF07516 SecA Wing and Scaffold domain AL545_13540 PF01043 SecA preprotein cross-linking domain AL545_13540 PF07517 SecA DEAD-like domain AL545_13540 PF02810 SEC-C motif AL545_13545 PF02600 Disulfide bond formation protein DsbB AL545_13550 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL545_13555 PF00392 Bacterial regulatory proteins, gntR family AL545_13555 PF07840 FadR C-terminal domain AL545_13565 PF09334 tRNA synthetases class I (M) AL545_13565 PF01588 Putative tRNA binding domain AL545_13570 PF10609 NUBPL iron-transfer P-loop NTPase AL545_13575 PF00485 Phosphoribulokinase / Uridine kinase family AL545_13585 PF12557 Cob(I)alamin adenosyltransferase N terminal AL545_13585 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL545_13590 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL545_13595 PF01740 STAS domain AL545_13595 PF00916 Sulfate permease family AL545_13605 PF10150 Ribonuclease E/G family AL545_13605 PF12111 Polyribonucleotide phosphorylase C terminal AL545_13605 PF00575 S1 RNA binding domain AL545_13615 PF00849 RNA pseudouridylate synthase AL545_13615 PF01479 S4 domain AL545_13620 PF02545 Maf-like protein AL545_13625 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL545_13630 PF01783 Ribosomal L32p protein family AL545_13635 PF02504 Fatty acid synthesis protein AL545_13640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL545_13640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL545_13645 PF00698 Acyl transferase domain AL545_13655 PF00550 Phosphopantetheine attachment site AL545_13660 PF00109 Beta-ketoacyl synthase, N-terminal domain AL545_13660 PF02801 Beta-ketoacyl synthase, C-terminal domain AL545_13665 PF01063 Amino-transferase class IV AL545_13670 PF02618 YceG-like family AL545_13675 PF02223 Thymidylate kinase AL545_13680 PF09115 DNA polymerase III, delta subunit, C terminal AL545_13685 PF01026 TatD related DNase AL545_13690 PF00367 phosphotransferase system, EIIB AL545_13690 PF02378 Phosphotransferase system, EIIC AL545_13700 PF00209 Sodium:neurotransmitter symporter family AL545_13715 PF01734 Patatin-like phospholipase AL545_13720 PF00224 Pyruvate kinase, barrel domain AL545_13720 PF02887 Pyruvate kinase, alpha/beta domain AL545_13725 PF00480 ROK family AL545_13730 PF00072 Response regulator receiver domain AL545_13730 PF01584 CheW-like domain AL545_13735 PF01336 OB-fold nucleic acid binding domain AL545_13735 PF14579 Helix-hairpin-helix motif AL545_13735 PF02811 PHP domain AL545_13735 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL545_13735 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL545_13750 PF00106 short chain dehydrogenase AL545_13755 PF01343 Peptidase family S49 AL545_13755 PF08496 Peptidase family S49 N-terminal AL545_13760 PF02224 Cytidylate kinase AL545_13765 PF00575 S1 RNA binding domain AL545_13770 PF00216 Bacterial DNA-binding protein AL545_13775 PF06305 Lipopolysaccharide assembly protein A domain AL545_13780 PF18073 Rubredoxin metal binding domain AL545_13785 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL545_13790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_13810 PF02470 MlaD protein AL545_13815 PF04403 Paraquat-inducible protein A AL545_13820 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL545_13825 PF00034 Cytochrome c AL545_13830 PF00384 Molybdopterin oxidoreductase AL545_13830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL545_13830 PF01568 Molydopterin dinucleotide binding domain AL545_13835 PF03916 Polysulphide reductase, NrfD AL545_13840 PF13247 4Fe-4S dicluster domain AL545_13845 PF00512 His Kinase A (phospho-acceptor) domain AL545_13845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_13850 PF00072 Response regulator receiver domain AL545_13850 PF00196 Bacterial regulatory proteins, luxR family AL545_13860 PF02683 Cytochrome C biogenesis protein transmembrane region AL545_13860 PF11412 Disulphide bond corrector protein DsbC AL545_13865 PF00085 Thioredoxin AL545_13885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_13895 PF12704 MacB-like periplasmic core domain AL545_13895 PF02687 FtsX-like permease family AL545_13895 PF00005 ABC transporter AL545_13900 PF12704 MacB-like periplasmic core domain AL545_13900 PF02687 FtsX-like permease family AL545_13900 PF00005 ABC transporter AL545_13905 PF00005 ABC transporter AL545_13905 PF02687 FtsX-like permease family AL545_13905 PF12704 MacB-like periplasmic core domain AL545_13925 PF08267 Cobalamin-independent synthase, N-terminal domain AL545_13925 PF01717 Cobalamin-independent synthase, Catalytic domain AL545_13935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_13935 PF00529 HlyD membrane-fusion protein of T1SS AL545_13940 PF03466 LysR substrate binding domain AL545_13940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_13955 PF00512 His Kinase A (phospho-acceptor) domain AL545_13955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_13955 PF00672 HAMP domain AL545_13960 PF00486 Transcriptional regulatory protein, C terminal AL545_13960 PF00072 Response regulator receiver domain AL545_13965 PF00535 Glycosyl transferase family 2 AL545_13970 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AL545_13990 PF04055 Radical SAM superfamily AL545_13990 PF11842 Domain of unknown function (DUF3362) AL545_13990 PF08497 Radical SAM N-terminal AL545_13995 PF00563 EAL domain AL545_13995 PF00990 Diguanylate cyclase, GGDEF domain AL545_13995 PF08447 PAS fold AL545_13995 PF08448 PAS fold AL545_14010 PF03466 LysR substrate binding domain AL545_14010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_14015 PF08267 Cobalamin-independent synthase, N-terminal domain AL545_14015 PF01717 Cobalamin-independent synthase, Catalytic domain AL545_14025 PF03795 YCII-related domain AL545_14030 PF03061 Thioesterase superfamily AL545_14035 PF04279 Intracellular septation protein A AL545_14045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_14045 PF00072 Response regulator receiver domain AL545_14050 PF17327 Acyl homoserine lactone synthase AL545_14055 PF00375 Sodium:dicarboxylate symporter family AL545_14065 PF13193 AMP-binding enzyme C-terminal domain AL545_14065 PF00501 AMP-binding enzyme AL545_14070 PF00027 Cyclic nucleotide-binding domain AL545_14070 PF13545 Crp-like helix-turn-helix domain AL545_14075 PF00290 Tryptophan synthase alpha chain AL545_14080 PF00291 Pyridoxal-phosphate dependent enzyme AL545_14085 PF00218 Indole-3-glycerol phosphate synthase AL545_14085 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL545_14090 PF02885 Glycosyl transferase family, helical bundle domain AL545_14090 PF00591 Glycosyl transferase family, a/b domain AL545_14095 PF00117 Glutamine amidotransferase class-I AL545_14100 PF00425 chorismate binding enzyme AL545_14100 PF04715 Anthranilate synthase component I, N terminal region AL545_14105 PF08056 Tryptophan operon leader peptide AL545_14110 PF02811 PHP domain AL545_14115 PF01300 Telomere recombination AL545_14125 PF00849 RNA pseudouridylate synthase AL545_14125 PF01479 S4 domain AL545_14130 PF04269 Protein of unknown function, DUF440 AL545_14135 PF01132 Elongation factor P (EF-P) OB domain AL545_14135 PF08207 Elongation factor P (EF-P) KOW-like domain AL545_14135 PF09285 Elongation factor P, C-terminal AL545_14145 PF03104 DNA polymerase family B, exonuclease domain AL545_14145 PF00136 DNA polymerase family B AL545_14150 PF00072 Response regulator receiver domain AL545_14150 PF00196 Bacterial regulatory proteins, luxR family AL545_14155 PF08459 UvrC Helix-hairpin-helix N-terminal AL545_14155 PF01541 GIY-YIG catalytic domain AL545_14155 PF02151 UvrB/uvrC motif AL545_14160 PF01066 CDP-alcohol phosphatidyltransferase AL545_14185 PF00202 Aminotransferase class-III AL545_14190 PF03435 Saccharopine dehydrogenase NADP binding domain AL545_14190 PF16653 Saccharopine dehydrogenase C-terminal domain AL545_14195 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL545_14210 PF00994 Probable molybdopterin binding domain AL545_14220 PF00268 Ribonucleotide reductase, small chain AL545_14225 PF03477 ATP cone domain AL545_14225 PF02867 Ribonucleotide reductase, barrel domain AL545_14225 PF00317 Ribonucleotide reductase, all-alpha domain AL545_14240 PF00521 DNA gyrase/topoisomerase IV, subunit A AL545_14240 PF03989 DNA gyrase C-terminal domain, beta-propeller AL545_14255 PF02335 Cytochrome c552 AL545_14265 PF13247 4Fe-4S dicluster domain AL545_14270 PF03916 Polysulphide reductase, NrfD AL545_14275 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL545_14275 PF01578 Cytochrome C assembly protein AL545_14280 PF08534 Redoxin AL545_14285 PF03918 Cytochrome C biogenesis protein AL545_14295 PF00925 GTP cyclohydrolase II AL545_14320 PF03734 L,D-transpeptidase catalytic domain AL545_14320 PF01471 Putative peptidoglycan binding domain AL545_14325 PF05951 Bacterial protein of unknown function (DUF882) AL545_14330 PF00753 Metallo-beta-lactamase superfamily AL545_14345 PF03480 Bacterial extracellular solute-binding protein, family 7 AL545_14355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL545_14360 PF07730 Histidine kinase AL545_14360 PF17200 Single Cache domain 2 AL545_14365 PF00196 Bacterial regulatory proteins, luxR family AL545_14365 PF00072 Response regulator receiver domain AL545_14375 PF02028 BCCT, betaine/carnitine/choline family transporter AL545_14380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_14380 PF00672 HAMP domain AL545_14400 PF00155 Aminotransferase class I and II AL545_14415 PF00155 Aminotransferase class I and II AL545_14415 PF00392 Bacterial regulatory proteins, gntR family AL545_14425 PF00152 tRNA synthetases class II (D, K and N) AL545_14425 PF01336 OB-fold nucleic acid binding domain AL545_14430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_14430 PF00672 HAMP domain AL545_14430 PF17200 Single Cache domain 2 AL545_14435 PF00563 EAL domain AL545_14435 PF03707 Bacterial signalling protein N terminal repeat AL545_14435 PF00990 Diguanylate cyclase, GGDEF domain AL545_14440 PF00672 HAMP domain AL545_14440 PF00072 Response regulator receiver domain AL545_14440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL545_14440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_14440 PF00512 His Kinase A (phospho-acceptor) domain AL545_14440 PF01627 Hpt domain AL545_14450 PF01242 6-pyruvoyl tetrahydropterin synthase AL545_14460 PF00563 EAL domain AL545_14460 PF04940 Sensors of blue-light using FAD AL545_14465 PF03315 Serine dehydratase beta chain AL545_14465 PF03313 Serine dehydratase alpha chain AL545_14470 PF03222 Tryptophan/tyrosine permease family AL545_14475 PF00293 NUDIX domain AL545_14485 PF00072 Response regulator receiver domain AL545_14485 PF09308 LuxQ, periplasmic AL545_14485 PF00512 His Kinase A (phospho-acceptor) domain AL545_14485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_14490 PF00425 chorismate binding enzyme AL545_14490 PF04715 Anthranilate synthase component I, N terminal region AL545_14510 PF04317 YcjX-like family, DUF463 AL545_14515 PF05128 Domain of unknown function (DUF697) AL545_14520 PF00158 Sigma-54 interaction domain AL545_14520 PF18024 Helix-turn-helix domain AL545_14525 PF13302 Acetyltransferase (GNAT) domain AL545_14540 PF13495 Phage integrase, N-terminal SAM-like domain AL545_14540 PF00589 Phage integrase family AL545_14570 PF13276 HTH-like domain AL545_14570 PF00665 Integrase core domain AL545_14570 PF13333 Integrase core domain AL545_14575 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL545_14645 PF00857 Isochorismatase family AL545_14680 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL545_14700 PF00043 Glutathione S-transferase, C-terminal domain AL545_14700 PF02798 Glutathione S-transferase, N-terminal domain AL545_14945 PF00665 Integrase core domain AL545_14945 PF13276 HTH-like domain AL545_14945 PF13333 Integrase core domain AL545_14950 PF13599 Pentapeptide repeats (9 copies) AL545_14965 PF13333 Integrase core domain AL545_14965 PF13276 HTH-like domain AL545_14965 PF00665 Integrase core domain AL545_14990 PF13276 HTH-like domain AL545_14990 PF13333 Integrase core domain AL545_14990 PF00665 Integrase core domain AL545_14995 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL545_15220 PF00583 Acetyltransferase (GNAT) family AL545_15240 PF00583 Acetyltransferase (GNAT) family AL545_15335 PF13545 Crp-like helix-turn-helix domain AL545_15335 PF00027 Cyclic nucleotide-binding domain AL545_15355 PF07715 TonB-dependent Receptor Plug Domain AL545_15360 PF11806 Domain of unknown function (DUF3327) AL545_15360 PF00756 Putative esterase AL545_15365 PF03621 MbtH-like protein AL545_15370 PF00501 AMP-binding enzyme AL545_15370 PF00668 Condensation domain AL545_15370 PF00550 Phosphopantetheine attachment site AL545_15370 PF13193 AMP-binding enzyme C-terminal domain AL545_15375 PF00005 ABC transporter AL545_15380 PF01032 FecCD transport family AL545_15385 PF01032 FecCD transport family AL545_15390 PF05977 Transmembrane secretion effector AL545_15395 PF01497 Periplasmic binding protein AL545_15400 PF00857 Isochorismatase family AL545_15400 PF00550 Phosphopantetheine attachment site AL545_15405 PF13193 AMP-binding enzyme C-terminal domain AL545_15405 PF00501 AMP-binding enzyme AL545_15410 PF00425 chorismate binding enzyme AL545_15420 PF00793 DAHP synthetase I family AL545_15430 PF01648 4'-phosphopantetheinyl transferase superfamily AL545_15430 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AL545_15510 PF14602 Hexapeptide repeat of succinyl-transferase AL545_15510 PF12464 Maltose acetyltransferase AL545_15515 PF13302 Acetyltransferase (GNAT) domain AL545_15520 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL545_15520 PF01411 tRNA synthetases class II (A) AL545_15540 PF07237 Protein of unknown function (DUF1428) AL545_15545 PF01810 LysE type translocator AL545_15550 PF01810 LysE type translocator AL545_15555 PF11008 Protein of unknown function (DUF2846) AL545_15560 PF17243 POTRA domain TamA domain 1 AL545_15560 PF01103 Surface antigen AL545_15565 PF13091 PLD-like domain AL545_15570 PF00135 Carboxylesterase family AL545_15585 PF13533 Biotin-lipoyl like AL545_15595 PF02080 TrkA-C domain AL545_15595 PF06826 Predicted Permease Membrane Region AL545_15600 PF00155 Aminotransferase class I and II AL545_15605 PF08543 Phosphomethylpyrimidine kinase AL545_15620 PF03466 LysR substrate binding domain AL545_15620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_15635 PF13533 Biotin-lipoyl like AL545_15650 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL545_15650 PF17203 Single cache domain 3 AL545_15650 PF00989 PAS fold AL545_15650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_15655 PF00072 Response regulator receiver domain AL545_15655 PF12431 Transcriptional regulator AL545_15660 PF00593 TonB dependent receptor AL545_15660 PF07715 TonB-dependent Receptor Plug Domain AL545_15665 PF02311 AraC-like ligand binding domain AL545_15665 PF12833 Helix-turn-helix domain AL545_15670 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL545_15670 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL545_15675 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL545_15680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL545_15680 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL545_15695 PF00158 Sigma-54 interaction domain AL545_15695 PF02954 Bacterial regulatory protein, Fis family AL545_15695 PF01590 GAF domain AL545_15700 PF00171 Aldehyde dehydrogenase family AL545_15720 PF12833 Helix-turn-helix domain AL545_15740 PF16697 Inner membrane component of T3SS, cytoplasmic domain AL545_15740 PF16693 Inner membrane component of T3SS, periplasmic domain AL545_15750 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AL545_15755 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AL545_15765 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AL545_15770 PF01514 Secretory protein of YscJ/FliF family AL545_15780 PF02108 Flagellar assembly protein FliH AL545_15790 PF02661 Fic/DOC family AL545_15820 PF12852 Cupin AL545_15820 PF12833 Helix-turn-helix domain AL545_15825 PF01312 FlhB HrpN YscU SpaS Family AL545_15830 PF01311 Bacterial export proteins, family 1 AL545_15835 PF01313 Bacterial export proteins, family 3 AL545_15840 PF00813 FliP family AL545_15845 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL545_15860 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL545_15860 PF18269 T3SS EscN ATPase C-terminal domain AL545_15860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL545_15870 PF09059 TyeA AL545_15890 PF00771 FHIPEP family AL545_15895 PF09621 Type III secretion system regulator (LcrR) AL545_15905 PF04792 V antigen (LcrV) protein AL545_15910 PF07720 Tetratricopeptide repeat AL545_15920 PF05844 YopD protein AL545_15925 PF01797 Transposase IS200 like AL545_15935 PF16868 NMT1-like family AL545_15940 PF01925 Sulfite exporter TauE/SafE AL545_15950 PF01970 Tripartite tricarboxylate transporter TctA family AL545_15980 PF00285 Citrate synthase, C-terminal domain AL545_15985 PF00330 Aconitase family (aconitate hydratase) AL545_15985 PF00694 Aconitase C-terminal domain AL545_15990 PF04303 PrpF protein AL545_15995 PF13193 AMP-binding enzyme C-terminal domain AL545_15995 PF16177 Acetyl-coenzyme A synthetase N-terminus AL545_15995 PF00501 AMP-binding enzyme AL545_16005 PF00089 Trypsin AL545_16020 PF04055 Radical SAM superfamily AL545_16025 PF06508 Queuosine biosynthesis protein QueC AL545_16035 PF01810 LysE type translocator AL545_16040 PF03466 LysR substrate binding domain AL545_16040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_16050 PF03466 LysR substrate binding domain AL545_16050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_16055 PF00873 AcrB/AcrD/AcrF family AL545_16065 PF03466 LysR substrate binding domain AL545_16065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_16070 PF00267 Gram-negative porin AL545_16080 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_16085 PF00528 Binding-protein-dependent transport system inner membrane component AL545_16090 PF00005 ABC transporter AL545_16095 PF02607 B12 binding domain AL545_16095 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL545_16095 PF02574 Homocysteine S-methyltransferase AL545_16095 PF00809 Pterin binding enzyme AL545_16095 PF02310 B12 binding domain AL545_16100 PF00107 Zinc-binding dehydrogenase AL545_16100 PF08240 Alcohol dehydrogenase GroES-like domain AL545_16110 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_16115 PF00857 Isochorismatase family AL545_16120 PF02311 AraC-like ligand binding domain AL545_16120 PF12833 Helix-turn-helix domain AL545_16135 PF07690 Major Facilitator Superfamily AL545_16140 PF03466 LysR substrate binding domain AL545_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_16150 PF03466 LysR substrate binding domain AL545_16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_16155 PF00248 Aldo/keto reductase family AL545_16165 PF09339 IclR helix-turn-helix domain AL545_16165 PF01614 Bacterial transcriptional regulator AL545_16170 PF13185 GAF domain AL545_16170 PF00990 Diguanylate cyclase, GGDEF domain AL545_16180 PF05736 OprF membrane domain AL545_16180 PF00691 OmpA family AL545_16195 PF00691 OmpA family AL545_16210 PF17785 PUA-like domain AL545_16210 PF10672 S-adenosylmethionine-dependent methyltransferase AL545_16215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_16215 PF17200 Single Cache domain 2 AL545_16215 PF00672 HAMP domain AL545_16220 PF00708 Acylphosphatase AL545_16225 PF04358 DsrC like protein AL545_16235 PF01027 Inhibitor of apoptosis-promoting Bax1 AL545_16240 PF00005 ABC transporter AL545_16245 PF00528 Binding-protein-dependent transport system inner membrane component AL545_16250 PF00528 Binding-protein-dependent transport system inner membrane component AL545_16255 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_16265 PF10414 Sirohaem synthase dimerisation region AL545_16265 PF14824 Sirohaem biosynthesis protein central AL545_16265 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL545_16270 PF04461 Protein of unknown function (DUF520) AL545_16275 PF00793 DAHP synthetase I family AL545_16295 PF01189 16S rRNA methyltransferase RsmB/F AL545_16295 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL545_16295 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL545_16300 PF02470 MlaD protein AL545_16305 PF04403 Paraquat-inducible protein A AL545_16310 PF00664 ABC transporter transmembrane region AL545_16310 PF00005 ABC transporter AL545_16315 PF13185 GAF domain AL545_16320 PF04352 ProQ/FINO family AL545_16320 PF17516 ProQ C-terminal domain AL545_16325 PF11818 C-terminal domain of tail specific protease (DUF3340) AL545_16325 PF00595 PDZ domain AL545_16325 PF03572 Peptidase family S41 AL545_16325 PF17804 Tail specific protease N-terminal domain AL545_16335 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL545_16335 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL545_16335 PF01433 Peptidase family M1 domain AL545_16345 PF05088 Bacterial NAD-glutamate dehydrogenase AL545_16350 PF01180 Dihydroorotate dehydrogenase AL545_16355 PF07126 Cell-division protein ZapC AL545_16360 PF02926 THUMP domain AL545_16360 PF10672 S-adenosylmethionine-dependent methyltransferase AL545_16360 PF01170 Putative RNA methylase family UPF0020 AL545_16380 PF04957 Ribosome modulation factor AL545_16385 PF07977 FabA-like domain AL545_16390 PF05362 Lon protease (S16) C-terminal proteolytic domain AL545_16390 PF13654 AAA domain AL545_16395 PF17414 MatP C-terminal ribbon-helix-helix domain AL545_16395 PF06303 MatP N-terminal domain AL545_16430 PF05707 Zonular occludens toxin (Zot) AL545_16565 PF05707 Zonular occludens toxin (Zot) AL545_16635 PF05707 Zonular occludens toxin (Zot) AL545_16685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_16685 PF00072 Response regulator receiver domain AL545_16685 PF09308 LuxQ, periplasmic AL545_16685 PF00512 His Kinase A (phospho-acceptor) domain AL545_16700 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL545_16715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL545_16715 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL545_16725 PF00403 Heavy-metal-associated domain AL545_16740 PF00027 Cyclic nucleotide-binding domain AL545_16740 PF13545 Crp-like helix-turn-helix domain AL545_16745 PF00582 Universal stress protein family AL545_16750 PF01797 Transposase IS200 like AL545_16755 PF01171 PP-loop family AL545_16775 PF08402 TOBE domain AL545_16775 PF00005 ABC transporter AL545_16780 PF00528 Binding-protein-dependent transport system inner membrane component AL545_16785 PF00528 Binding-protein-dependent transport system inner membrane component AL545_16790 PF13416 Bacterial extracellular solute-binding protein AL545_16795 PF13416 Bacterial extracellular solute-binding protein AL545_16800 PF02146 Sir2 family AL545_16805 PF00909 Ammonium Transporter Family AL545_16835 PF13247 4Fe-4S dicluster domain AL545_16840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL545_16840 PF01568 Molydopterin dinucleotide binding domain AL545_16840 PF00384 Molybdopterin oxidoreductase AL545_16850 PF02613 Nitrate reductase delta subunit AL545_16870 PF02634 FdhD/NarQ family AL545_16875 PF12848 ABC transporter AL545_16875 PF00005 ABC transporter AL545_16885 PF00989 PAS fold AL545_16885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_16885 PF00512 His Kinase A (phospho-acceptor) domain AL545_16890 PF00158 Sigma-54 interaction domain AL545_16890 PF00072 Response regulator receiver domain AL545_16890 PF02954 Bacterial regulatory protein, Fis family AL545_16895 PF12849 PBP superfamily domain AL545_16900 PF00528 Binding-protein-dependent transport system inner membrane component AL545_16905 PF00005 ABC transporter AL545_16905 PF08402 TOBE domain AL545_16910 PF12804 MobA-like NTP transferase domain AL545_16915 PF03453 MoeA N-terminal region (domain I and II) AL545_16915 PF00994 Probable molybdopterin binding domain AL545_16915 PF03454 MoeA C-terminal region (domain IV) AL545_16925 PF00480 ROK family AL545_16960 PF00877 NlpC/P60 family AL545_16970 PF05230 MASE2 domain AL545_16970 PF00990 Diguanylate cyclase, GGDEF domain AL545_16975 PF00072 Response regulator receiver domain AL545_16975 PF01339 CheB methylesterase AL545_16990 PF00677 Lumazine binding domain AL545_16995 PF01554 MatE AL545_17005 PF01068 ATP dependent DNA ligase domain AL545_17005 PF14743 DNA ligase OB-like domain AL545_17010 PF01740 STAS domain AL545_17020 PF10531 SLBB domain AL545_17020 PF02563 Polysaccharide biosynthesis/export protein AL545_17035 PF00158 Sigma-54 interaction domain AL545_17035 PF00072 Response regulator receiver domain AL545_17035 PF02954 Bacterial regulatory protein, Fis family AL545_17040 PF13439 Glycosyltransferase Family 4 AL545_17040 PF00534 Glycosyl transferases group 1 AL545_17045 PF00534 Glycosyl transferases group 1 AL545_17045 PF13439 Glycosyltransferase Family 4 AL545_17075 PF00534 Glycosyl transferases group 1 AL545_17075 PF13439 Glycosyltransferase Family 4 AL545_17085 PF02397 Bacterial sugar transferase AL545_17095 PF02028 BCCT, betaine/carnitine/choline family transporter AL545_17110 PF00270 DEAD/DEAH box helicase AL545_17110 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL545_17110 PF00271 Helicase conserved C-terminal domain AL545_17110 PF04408 Helicase associated domain (HA2) AL545_17110 PF11898 Domain of unknown function (DUF3418) AL545_17115 PF02525 Flavodoxin-like fold AL545_17150 PF00990 Diguanylate cyclase, GGDEF domain AL545_17160 PF00012 Hsp70 protein AL545_17165 PF00012 Hsp70 protein AL545_17180 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL545_17180 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL545_17190 PF03466 LysR substrate binding domain AL545_17190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_17200 PF07963 Prokaryotic N-terminal methylation motif AL545_17200 PF08334 Type II secretion system (T2SS), protein G AL545_17205 PF00005 ABC transporter AL545_17205 PF00664 ABC transporter transmembrane region AL545_17210 PF00005 ABC transporter AL545_17210 PF00664 ABC transporter transmembrane region AL545_17220 PF00593 TonB dependent receptor AL545_17220 PF07715 TonB-dependent Receptor Plug Domain AL545_17225 PF01032 FecCD transport family AL545_17230 PF01497 Periplasmic binding protein AL545_17235 PF00005 ABC transporter AL545_17245 PF01966 HD domain AL545_17245 PF11871 Domain of unknown function (DUF3391) AL545_17250 PF03222 Tryptophan/tyrosine permease family AL545_17255 PF00465 Iron-containing alcohol dehydrogenase AL545_17260 PF01966 HD domain AL545_17270 PF03741 Integral membrane protein TerC family AL545_17280 PF04055 Radical SAM superfamily AL545_17285 PF11230 Protein of unknown function (DUF3029) AL545_17290 PF01810 LysE type translocator AL545_17295 PF01966 HD domain AL545_17295 PF11871 Domain of unknown function (DUF3391) AL545_17300 PF03707 Bacterial signalling protein N terminal repeat AL545_17300 PF00990 Diguanylate cyclase, GGDEF domain AL545_17300 PF00563 EAL domain AL545_17305 PF02954 Bacterial regulatory protein, Fis family AL545_17305 PF00158 Sigma-54 interaction domain AL545_17305 PF00072 Response regulator receiver domain AL545_17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_17310 PF00512 His Kinase A (phospho-acceptor) domain AL545_17315 PF00939 Sodium:sulfate symporter transmembrane region AL545_17335 PF00990 Diguanylate cyclase, GGDEF domain AL545_17335 PF00072 Response regulator receiver domain AL545_17340 PF03928 Haem-degrading AL545_17345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL545_17345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL545_17350 PF08220 DeoR-like helix-turn-helix domain AL545_17350 PF00455 DeoR C terminal sensor domain AL545_17365 PF02321 Outer membrane efflux protein AL545_17375 PF00664 ABC transporter transmembrane region AL545_17375 PF03412 Peptidase C39 family AL545_17375 PF00005 ABC transporter AL545_17390 PF00884 Sulfatase AL545_17405 PF13186 Iron-sulfur cluster-binding domain AL545_17405 PF04055 Radical SAM superfamily AL545_17410 PF03781 Sulfatase-modifying factor enzyme 1 AL545_17420 PF00884 Sulfatase AL545_17425 PF01797 Transposase IS200 like AL545_17430 PF00696 Amino acid kinase family AL545_17430 PF13840 ACT domain AL545_17435 PF06339 Ectoine synthase AL545_17440 PF00202 Aminotransferase class-III AL545_17445 PF00583 Acetyltransferase (GNAT) family AL545_17450 PF02028 BCCT, betaine/carnitine/choline family transporter AL545_17465 PF00571 CBS domain AL545_17465 PF00005 ABC transporter AL545_17470 PF00528 Binding-protein-dependent transport system inner membrane component AL545_17475 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL545_17480 PF00884 Sulfatase AL545_17505 PF01235 Sodium:alanine symporter family AL545_17515 PF01810 LysE type translocator AL545_17520 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL545_17525 PF03279 Bacterial lipid A biosynthesis acyltransferase AL545_17530 PF00893 Small Multidrug Resistance protein AL545_17540 PF04204 Homoserine O-succinyltransferase AL545_17555 PF00563 EAL domain AL545_17555 PF00990 Diguanylate cyclase, GGDEF domain AL545_17555 PF03707 Bacterial signalling protein N terminal repeat AL545_17560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL545_17560 PF00072 Response regulator receiver domain AL545_17560 PF01627 Hpt domain AL545_17560 PF00512 His Kinase A (phospho-acceptor) domain AL545_17560 PF00672 HAMP domain AL545_17560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_17585 PF04237 YjbR AL545_17590 PF01047 MarR family AL545_17600 PF00563 EAL domain AL545_17600 PF12792 CSS motif domain associated with EAL AL545_17605 PF00202 Aminotransferase class-III AL545_17610 PF00171 Aldehyde dehydrogenase family AL545_17615 PF04371 Porphyromonas-type peptidyl-arginine deiminase AL545_17620 PF00795 Carbon-nitrogen hydrolase AL545_17625 PF01266 FAD dependent oxidoreductase AL545_17630 PF00171 Aldehyde dehydrogenase family AL545_17635 PF07883 Cupin domain AL545_17635 PF01381 Helix-turn-helix AL545_17640 PF07722 Peptidase C26 AL545_17650 PF00120 Glutamine synthetase, catalytic domain AL545_17655 PF03553 Na+/H+ antiporter family AL545_17670 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AL545_17695 PF07007 Lysozyme inhibitor LprI AL545_17745 PF02798 Glutathione S-transferase, N-terminal domain AL545_17745 PF14497 Glutathione S-transferase, C-terminal domain AL545_17755 PF04209 homogentisate 1,2-dioxygenase AL545_17760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL545_17765 PF01546 Peptidase family M20/M25/M40 AL545_17765 PF07687 Peptidase dimerisation domain AL545_17770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_17775 PF00528 Binding-protein-dependent transport system inner membrane component AL545_17780 PF00528 Binding-protein-dependent transport system inner membrane component AL545_17780 PF12911 N-terminal TM domain of oligopeptide transport permease C AL545_17785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_17785 PF00005 ABC transporter AL545_17790 PF00005 ABC transporter AL545_17790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_17800 PF01752 Collagenase AL545_17800 PF08453 Peptidase family M9 N-terminal AL545_17810 PF00528 Binding-protein-dependent transport system inner membrane component AL545_17815 PF00528 Binding-protein-dependent transport system inner membrane component AL545_17820 PF08402 TOBE domain AL545_17820 PF00005 ABC transporter AL545_17825 PF00701 Dihydrodipicolinate synthetase family AL545_17830 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL545_17840 PF01266 FAD dependent oxidoreductase AL545_17840 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL545_17845 PF05544 Proline racemase AL545_17850 PF00171 Aldehyde dehydrogenase family AL545_17855 PF00392 Bacterial regulatory proteins, gntR family AL545_17875 PF05971 RNA methyltransferase AL545_17880 PF01863 Protein of unknown function DUF45 AL545_17890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_17890 PF03466 LysR substrate binding domain AL545_17910 PF00005 ABC transporter AL545_17915 PF01032 FecCD transport family AL545_17920 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL545_17935 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL545_17940 PF02654 Cobalamin-5-phosphate synthase AL545_17945 PF02277 Phosphoribosyltransferase AL545_17950 PF13460 NAD(P)H-binding AL545_17960 PF08411 Exonuclease C-terminal AL545_17960 PF00929 Exonuclease AL545_17965 PF03788 LrgA family AL545_17970 PF04172 LrgB-like family AL545_17975 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL545_17975 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL545_17980 PF02222 ATP-grasp domain AL545_17985 PF05724 Thiopurine S-methyltransferase (TPMT) AL545_17995 PF00216 Bacterial DNA-binding protein AL545_18005 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL545_18005 PF03484 tRNA synthetase B5 domain AL545_18005 PF03147 Ferredoxin-fold anticodon binding domain AL545_18005 PF01588 Putative tRNA binding domain AL545_18005 PF03483 B3/4 domain AL545_18010 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL545_18010 PF01409 tRNA synthetases class II core domain (F) AL545_18045 PF01906 Putative heavy-metal-binding AL545_18050 PF00453 Ribosomal protein L20 AL545_18055 PF01632 Ribosomal protein L35 AL545_18060 PF00707 Translation initiation factor IF-3, C-terminal domain AL545_18060 PF05198 Translation initiation factor IF-3, N-terminal domain AL545_18065 PF03129 Anticodon binding domain AL545_18065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL545_18065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL545_18065 PF02824 TGS domain AL545_18080 PF00392 Bacterial regulatory proteins, gntR family AL545_18080 PF07702 UTRA domain AL545_18085 PF01979 Amidohydrolase family AL545_18090 PF00491 Arginase family AL545_18095 PF01175 Urocanase Rossmann-like domain AL545_18095 PF17391 Urocanase N-terminal domain AL545_18095 PF17392 Urocanase C-terminal domain AL545_18100 PF00221 Aromatic amino acid lyase AL545_18110 PF04191 Phospholipid methyltransferase AL545_18115 PF13183 4Fe-4S dicluster domain AL545_18115 PF02913 FAD linked oxidases, C-terminal domain AL545_18115 PF01565 FAD binding domain AL545_18130 PF05736 OprF membrane domain AL545_18130 PF00691 OmpA family AL545_18150 PF01259 SAICAR synthetase AL545_18155 PF16655 PhoD-like phosphatase, N-terminal domain AL545_18155 PF09423 PhoD-like phosphatase AL545_18165 PF00270 DEAD/DEAH box helicase AL545_18165 PF11898 Domain of unknown function (DUF3418) AL545_18165 PF04408 Helicase associated domain (HA2) AL545_18165 PF00271 Helicase conserved C-terminal domain AL545_18165 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL545_18170 PF03949 Malic enzyme, NAD binding domain AL545_18170 PF00390 Malic enzyme, N-terminal domain AL545_18175 PF02698 DUF218 domain AL545_18180 PF00939 Sodium:sulfate symporter transmembrane region AL545_18185 PF00990 Diguanylate cyclase, GGDEF domain AL545_18185 PF00072 Response regulator receiver domain AL545_18195 PF00266 Aminotransferase class-V AL545_18205 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_18210 PF00664 ABC transporter transmembrane region AL545_18210 PF00005 ABC transporter AL545_18215 PF00005 ABC transporter AL545_18215 PF00664 ABC transporter transmembrane region AL545_18220 PF00291 Pyridoxal-phosphate dependent enzyme AL545_18225 PF00266 Aminotransferase class-V AL545_18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_18235 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_18235 PF00512 His Kinase A (phospho-acceptor) domain AL545_18250 PF04994 TfoX C-terminal domain AL545_18250 PF04993 TfoX N-terminal domain AL545_18270 PF03956 Lysine exporter LysO AL545_18280 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL545_18285 PF01418 Helix-turn-helix domain, rpiR family AL545_18285 PF01380 SIS domain AL545_18290 PF00465 Iron-containing alcohol dehydrogenase AL545_18300 PF00462 Glutaredoxin AL545_18305 PF02080 TrkA-C domain AL545_18305 PF06826 Predicted Permease Membrane Region AL545_18310 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL545_18310 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL545_18310 PF07055 Enoyl reductase FAD binding domain AL545_18315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL545_18315 PF09317 Domain of unknown function (DUF1974) AL545_18315 PF02770 Acyl-CoA dehydrogenase, middle domain AL545_18315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL545_18320 PF00440 Bacterial regulatory proteins, tetR family AL545_18320 PF16295 Tetracyclin repressor-like, C-terminal domain AL545_18325 PF06965 Na+/H+ antiporter 1 AL545_18340 PF00005 ABC transporter AL545_18345 PF01554 MatE AL545_18350 PF11066 Protein of unknown function (DUF2867) AL545_18350 PF13460 NAD(P)H-binding AL545_18360 PF07690 Major Facilitator Superfamily AL545_18370 PF01479 S4 domain AL545_18370 PF00849 RNA pseudouridylate synthase AL545_18375 PF00271 Helicase conserved C-terminal domain AL545_18375 PF04851 Type III restriction enzyme, res subunit AL545_18385 PF00072 Response regulator receiver domain AL545_18385 PF00486 Transcriptional regulatory protein, C terminal AL545_18390 PF00512 His Kinase A (phospho-acceptor) domain AL545_18390 PF00672 HAMP domain AL545_18390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_18395 PF01386 Ribosomal L25p family AL545_18405 PF02872 5'-nucleotidase, C-terminal domain AL545_18405 PF00149 Calcineurin-like phosphoesterase AL545_18420 PF06945 Protein of unknown function (DUF1289) AL545_18430 PF13416 Bacterial extracellular solute-binding protein AL545_18435 PF00528 Binding-protein-dependent transport system inner membrane component AL545_18440 PF00005 ABC transporter AL545_18445 PF01066 CDP-alcohol phosphatidyltransferase AL545_18460 PF01590 GAF domain AL545_18460 PF00158 Sigma-54 interaction domain AL545_18465 PF03063 Prismane/CO dehydrogenase family AL545_18470 PF00175 Oxidoreductase NAD-binding domain AL545_18470 PF00111 2Fe-2S iron-sulfur cluster binding domain AL545_18470 PF00970 Oxidoreductase FAD-binding domain AL545_18475 PF10672 S-adenosylmethionine-dependent methyltransferase AL545_18475 PF01170 Putative RNA methylase family UPF0020 AL545_18475 PF02926 THUMP domain AL545_18480 PF00849 RNA pseudouridylate synthase AL545_18485 PF00209 Sodium:neurotransmitter symporter family AL545_18490 PF13396 Phospholipase_D-nuclease N-terminal AL545_18490 PF13091 PLD-like domain AL545_18495 PF01053 Cys/Met metabolism PLP-dependent enzyme AL545_18500 PF00561 alpha/beta hydrolase fold AL545_18505 PF03280 Proteobacterial lipase chaperone protein AL545_18510 PF03352 Methyladenine glycosylase AL545_18515 PF00873 AcrB/AcrD/AcrF family AL545_18520 PF13533 Biotin-lipoyl like AL545_18530 PF04024 PspC domain AL545_18535 PF06667 Phage shock protein B AL545_18540 PF04012 PspA/IM30 family AL545_18545 PF00158 Sigma-54 interaction domain AL545_18545 PF02954 Bacterial regulatory protein, Fis family AL545_18550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_18555 PF00528 Binding-protein-dependent transport system inner membrane component AL545_18560 PF12911 N-terminal TM domain of oligopeptide transport permease C AL545_18560 PF00528 Binding-protein-dependent transport system inner membrane component AL545_18565 PF00005 ABC transporter AL545_18565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_18570 PF00005 ABC transporter AL545_18580 PF01368 DHH family AL545_18580 PF02833 DHHA2 domain AL545_18590 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL545_18590 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL545_18595 PF18364 Molybdopterin oxidoreductase N-terminal domain AL545_18595 PF01568 Molydopterin dinucleotide binding domain AL545_18595 PF00384 Molybdopterin oxidoreductase AL545_18600 PF03264 NapC/NirT cytochrome c family, N-terminal region AL545_18605 PF06796 Periplasmic nitrate reductase protein NapE AL545_18610 PF03649 Uncharacterised protein family (UPF0014) AL545_18620 PF01226 Formate/nitrite transporter AL545_18650 PF00265 Thymidine kinase AL545_18655 PF09190 DALR domain AL545_18655 PF01406 tRNA synthetases class I (C) catalytic domain AL545_18660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL545_18665 PF00149 Calcineurin-like phosphoesterase AL545_18670 PF08668 HDOD domain AL545_18670 PF00563 EAL domain AL545_18675 PF02810 SEC-C motif AL545_18680 PF01502 Phosphoribosyl-AMP cyclohydrolase AL545_18680 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL545_18685 PF00977 Histidine biosynthesis protein AL545_18690 PF00977 Histidine biosynthesis protein AL545_18695 PF00117 Glutamine amidotransferase class-I AL545_18700 PF00475 Imidazoleglycerol-phosphate dehydratase AL545_18700 PF08645 Polynucleotide kinase 3 phosphatase AL545_18705 PF00155 Aminotransferase class I and II AL545_18710 PF00815 Histidinol dehydrogenase AL545_18715 PF08029 HisG, C-terminal domain AL545_18715 PF01634 ATP phosphoribosyltransferase AL545_18720 PF00072 Response regulator receiver domain AL545_18720 PF00158 Sigma-54 interaction domain AL545_18720 PF02954 Bacterial regulatory protein, Fis family AL545_18725 PF03553 Na+/H+ antiporter family AL545_18730 PF00816 H-NS histone family AL545_18735 PF00294 pfkB family carbohydrate kinase AL545_18750 PF04356 Protein of unknown function (DUF489) AL545_18755 PF00206 Lyase AL545_18755 PF08328 Adenylosuccinate lyase C-terminal AL545_18765 PF16036 Chalcone isomerase-like AL545_18790 PF00106 short chain dehydrogenase AL545_18800 PF01435 Peptidase family M48 AL545_18815 PF08241 Methyltransferase domain AL545_18820 PF00155 Aminotransferase class I and II AL545_18825 PF06968 Biotin and Thiamin Synthesis associated domain AL545_18825 PF04055 Radical SAM superfamily AL545_18835 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL545_18840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL545_18840 PF02403 Seryl-tRNA synthetase N-terminal domain AL545_18845 PF16193 AAA C-terminal domain AL545_18845 PF00004 ATPase family associated with various cellular activities (AAA) AL545_18845 PF12002 MgsA AAA+ ATPase C terminal AL545_18850 PF03548 Outer membrane lipoprotein carrier protein LolA AL545_18855 PF17854 FtsK alpha domain AL545_18855 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL545_18855 PF09397 Ftsk gamma domain AL545_18855 PF01580 FtsK/SpoIIIE family AL545_18860 PF01037 Lrp/AsnC ligand binding domain AL545_18865 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL545_18865 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL545_18875 PF03466 LysR substrate binding domain AL545_18875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_18885 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL545_18890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_18890 PF00672 HAMP domain AL545_18900 PF03372 Endonuclease/Exonuclease/phosphatase family AL545_18910 PF00579 tRNA synthetases class I (W and Y) AL545_18925 PF00873 AcrB/AcrD/AcrF family AL545_18930 PF00529 HlyD membrane-fusion protein of T1SS AL545_18930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_18935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_18935 PF17200 Single Cache domain 2 AL545_18935 PF00672 HAMP domain AL545_18950 PF01654 Cytochrome bd terminal oxidase subunit I AL545_18955 PF02322 Cytochrome bd terminal oxidase subunit II AL545_18980 PF06610 L-alanine exporter AL545_18985 PF00512 His Kinase A (phospho-acceptor) domain AL545_18985 PF00072 Response regulator receiver domain AL545_18985 PF09308 LuxQ, periplasmic AL545_18985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_18995 PF03738 Glutathionylspermidine synthase preATP-grasp AL545_19005 PF03994 Domain of Unknown Function (DUF350) AL545_19015 PF02445 Quinolinate synthetase A protein AL545_19020 PF16331 TolA binding protein trimerisation AL545_19020 PF13174 Tetratricopeptide repeat AL545_19025 PF00691 OmpA family AL545_19030 PF07676 WD40-like Beta Propeller Repeat AL545_19030 PF04052 TolB amino-terminal domain AL545_19040 PF02472 Biopolymer transport protein ExbD/TolR AL545_19045 PF01618 MotA/TolQ/ExbB proton channel family AL545_19050 PF03061 Thioesterase superfamily AL545_19060 PF08173 Membrane bound YbgT-like protein AL545_19065 PF02322 Cytochrome bd terminal oxidase subunit II AL545_19070 PF01654 Cytochrome bd terminal oxidase subunit I AL545_19075 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL545_19075 PF05491 RuvB C-terminal winged helix domain AL545_19075 PF17864 RuvB AAA lid domain AL545_19080 PF01330 RuvA N terminal domain AL545_19080 PF07499 RuvA, C-terminal domain AL545_19085 PF02075 Crossover junction endodeoxyribonuclease RuvC AL545_19090 PF01709 Transcriptional regulator AL545_19095 PF00152 tRNA synthetases class II (D, K and N) AL545_19095 PF01336 OB-fold nucleic acid binding domain AL545_19095 PF02938 GAD domain AL545_19100 PF01904 Protein of unknown function DUF72 AL545_19105 PF13649 Methyltransferase domain AL545_19110 PF08003 Protein of unknown function (DUF1698) AL545_19120 PF08443 RimK-like ATP-grasp domain AL545_19120 PF18030 RimK PreATP-grasp domain AL545_19140 PF16330 MukB hinge domain AL545_19140 PF04310 MukB N-terminal AL545_19145 PF04288 MukE-like family AL545_19150 PF17192 MukF middle domain AL545_19150 PF17193 MukF C-terminal domain AL545_19150 PF03882 MukF winged-helix domain AL545_19160 PF02698 DUF218 domain AL545_19165 PF00486 Transcriptional regulatory protein, C terminal AL545_19165 PF00072 Response regulator receiver domain AL545_19170 PF02613 Nitrate reductase delta subunit AL545_19175 PF00356 Bacterial regulatory proteins, lacI family AL545_19180 PF04993 TfoX N-terminal domain AL545_19180 PF04994 TfoX C-terminal domain AL545_19200 PF00534 Glycosyl transferases group 1 AL545_19200 PF08323 Starch synthase catalytic domain AL545_19205 PF00483 Nucleotidyl transferase AL545_19210 PF01751 Toprim domain AL545_19210 PF01131 DNA topoisomerase AL545_19210 PF08272 Topoisomerase I zinc-ribbon-like AL545_19210 PF01396 Topoisomerase DNA binding C4 zinc finger AL545_19215 PF10692 Protein of unknown function (DUF2498) AL545_19220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL545_19230 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL545_19235 PF04376 Arginine-tRNA-protein transferase, N terminus AL545_19235 PF04377 Arginine-tRNA-protein transferase, C terminus AL545_19240 PF01176 Translation initiation factor 1A / IF-1 AL545_19245 PF07724 AAA domain (Cdc48 subfamily) AL545_19245 PF10431 C-terminal, D2-small domain, of ClpB protein AL545_19245 PF00004 ATPase family associated with various cellular activities (AAA) AL545_19245 PF17871 AAA lid domain AL545_19245 PF02861 Clp amino terminal domain, pathogenicity island component AL545_19250 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL545_19255 PF00313 'Cold-shock' DNA-binding domain AL545_19260 PF03971 Monomeric isocitrate dehydrogenase AL545_19265 PF00849 RNA pseudouridylate synthase AL545_19270 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL545_19280 PF06733 DEAD_2 AL545_19280 PF13307 Helicase C-terminal domain AL545_19285 PF01925 Sulfite exporter TauE/SafE AL545_19290 PF07445 Primosomal replication protein priC AL545_19295 PF10689 Protein of unknown function (DUF2496) AL545_19300 PF03372 Endonuclease/Exonuclease/phosphatase family AL545_19310 PF00528 Binding-protein-dependent transport system inner membrane component AL545_19315 PF00528 Binding-protein-dependent transport system inner membrane component AL545_19320 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_19325 PF00005 ABC transporter AL545_19345 PF02901 Pyruvate formate lyase-like AL545_19345 PF01228 Glycine radical AL545_19355 PF04055 Radical SAM superfamily AL545_19365 PF03887 YfbU domain AL545_19375 PF08298 PrkA AAA domain AL545_19375 PF06798 PrkA serine protein kinase C-terminal domain AL545_19380 PF04285 Protein of unknown function (DUF444) AL545_19385 PF04293 SpoVR like protein AL545_19390 PF02348 Cytidylyltransferase AL545_19395 PF03966 Trm112p-like protein AL545_19400 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL545_19405 PF00664 ABC transporter transmembrane region AL545_19405 PF00005 ABC transporter AL545_19410 PF03772 Competence protein AL545_19410 PF13567 Domain of unknown function (DUF4131) AL545_19410 PF00753 Metallo-beta-lactamase superfamily AL545_19420 PF02687 FtsX-like permease family AL545_19420 PF12704 MacB-like periplasmic core domain AL545_19425 PF00005 ABC transporter AL545_19430 PF02687 FtsX-like permease family AL545_19430 PF12704 MacB-like periplasmic core domain AL545_19440 PF03461 TRCF domain AL545_19440 PF00270 DEAD/DEAH box helicase AL545_19440 PF02559 CarD-like/TRCF domain AL545_19440 PF17757 UvrB interaction domain AL545_19440 PF00271 Helicase conserved C-terminal domain AL545_19455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_19460 PF05728 Uncharacterised protein family (UPF0227) AL545_19470 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL545_19470 PF13036 Peptidoglycan-synthase activator LpoB AL545_19485 PF01230 HIT domain AL545_19490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_19490 PF00672 HAMP domain AL545_19500 PF01048 Phosphorylase superfamily AL545_19505 PF00403 Heavy-metal-associated domain AL545_19510 PF00571 CBS domain AL545_19510 PF00478 IMP dehydrogenase / GMP reductase domain AL545_19515 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL545_19515 PF00588 SpoU rRNA Methylase family AL545_19525 PF08448 PAS fold AL545_19525 PF00990 Diguanylate cyclase, GGDEF domain AL545_19535 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL545_19540 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL545_19555 PF01037 Lrp/AsnC ligand binding domain AL545_19555 PF13404 AsnC-type helix-turn-helix domain AL545_19560 PF00291 Pyridoxal-phosphate dependent enzyme AL545_19575 PF00873 AcrB/AcrD/AcrF family AL545_19580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_19580 PF00529 HlyD membrane-fusion protein of T1SS AL545_19625 PF07690 Major Facilitator Superfamily AL545_19630 PF03601 Conserved hypothetical protein 698 AL545_19640 PF13193 AMP-binding enzyme C-terminal domain AL545_19640 PF00501 AMP-binding enzyme AL545_19645 PF13378 Enolase C-terminal domain-like AL545_19650 PF00378 Enoyl-CoA hydratase/isomerase AL545_19655 PF12697 Alpha/beta hydrolase family AL545_19660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL545_19660 PF16582 Middle domain of thiamine pyrophosphate AL545_19660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL545_19665 PF00425 chorismate binding enzyme AL545_19670 PF00155 Aminotransferase class I and II AL545_19680 PF13286 Phosphohydrolase-associated domain AL545_19680 PF01966 HD domain AL545_19700 PF13145 PPIC-type PPIASE domain AL545_19705 PF00216 Bacterial DNA-binding protein AL545_19710 PF00004 ATPase family associated with various cellular activities (AAA) AL545_19710 PF05362 Lon protease (S16) C-terminal proteolytic domain AL545_19710 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL545_19715 PF07724 AAA domain (Cdc48 subfamily) AL545_19715 PF10431 C-terminal, D2-small domain, of ClpB protein AL545_19715 PF06689 ClpX C4-type zinc finger AL545_19720 PF00574 Clp protease AL545_19725 PF05697 Bacterial trigger factor protein (TF) AL545_19725 PF05698 Bacterial trigger factor protein (TF) C-terminus AL545_19725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL545_19735 PF02743 Cache domain AL545_19735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_19735 PF00512 His Kinase A (phospho-acceptor) domain AL545_19740 PF00158 Sigma-54 interaction domain AL545_19740 PF00072 Response regulator receiver domain AL545_19740 PF02954 Bacterial regulatory protein, Fis family AL545_19750 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL545_19755 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL545_19760 PF03480 Bacterial extracellular solute-binding protein, family 7 AL545_19765 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL545_19780 PF02386 Cation transport protein AL545_19785 PF02254 TrkA-N domain AL545_19785 PF02080 TrkA-C domain AL545_19790 PF00271 Helicase conserved C-terminal domain AL545_19790 PF00270 DEAD/DEAH box helicase AL545_19800 PF04820 Tryptophan halogenase AL545_19825 PF00550 Phosphopantetheine attachment site AL545_19830 PF00550 Phosphopantetheine attachment site AL545_19845 PF07977 FabA-like domain AL545_19850 PF00535 Glycosyl transferase family 2 AL545_19855 PF00221 Aromatic amino acid lyase AL545_19880 PF02801 Beta-ketoacyl synthase, C-terminal domain AL545_19880 PF00109 Beta-ketoacyl synthase, N-terminal domain AL545_19885 PF07977 FabA-like domain AL545_19895 PF00109 Beta-ketoacyl synthase, N-terminal domain AL545_19895 PF02801 Beta-ketoacyl synthase, C-terminal domain AL545_19905 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL545_19905 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL545_19910 PF07670 Nucleoside recognition AL545_19910 PF01773 Na+ dependent nucleoside transporter N-terminus AL545_19910 PF07662 Na+ dependent nucleoside transporter C-terminus AL545_19915 PF03466 LysR substrate binding domain AL545_19915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_19920 PF13406 Transglycosylase SLT domain AL545_19925 PF05166 YcgL domain AL545_19930 PF03775 Septum formation inhibitor MinC, C-terminal domain AL545_19930 PF05209 Septum formation inhibitor MinC, N-terminal domain AL545_19935 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL545_19940 PF03776 Septum formation topological specificity factor MinE AL545_19945 PF01612 3'-5' exonuclease AL545_19945 PF00570 HRDC domain AL545_19950 PF00501 AMP-binding enzyme AL545_19950 PF13193 AMP-binding enzyme C-terminal domain AL545_19955 PF00561 alpha/beta hydrolase fold AL545_19960 PF03843 Outer membrane lipoprotein Slp family AL545_19970 PF00814 Glycoprotease family AL545_19975 PF13307 Helicase C-terminal domain AL545_19975 PF04851 Type III restriction enzyme, res subunit AL545_19980 PF00551 Formyl transferase AL545_19980 PF01842 ACT domain AL545_19985 PF00089 Trypsin AL545_19995 PF06185 YecM protein AL545_20005 PF05746 DALR anticodon binding domain AL545_20005 PF00750 tRNA synthetases class I (R) AL545_20005 PF03485 Arginyl tRNA synthetase N terminal domain AL545_20025 PF07670 Nucleoside recognition AL545_20025 PF02421 Ferrous iron transport protein B AL545_20025 PF07664 Ferrous iron transport protein B C terminus AL545_20025 PF17910 FeoB cytosolic helical domain AL545_20030 PF04023 FeoA domain AL545_20035 PF02311 AraC-like ligand binding domain AL545_20035 PF12833 Helix-turn-helix domain AL545_20040 PF01297 Zinc-uptake complex component A periplasmic AL545_20045 PF00005 ABC transporter AL545_20050 PF00950 ABC 3 transport family AL545_20055 PF02629 CoA binding domain AL545_20055 PF00549 CoA-ligase AL545_20060 PF08442 ATP-grasp domain AL545_20060 PF00549 CoA-ligase AL545_20065 PF02817 e3 binding domain AL545_20065 PF00364 Biotin-requiring enzyme AL545_20065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL545_20070 PF02779 Transketolase, pyrimidine binding domain AL545_20070 PF16078 2-oxoglutarate dehydrogenase N-terminus AL545_20070 PF00676 Dehydrogenase E1 component AL545_20070 PF16870 2-oxoglutarate dehydrogenase C-terminal AL545_20075 PF13085 2Fe-2S iron-sulfur cluster binding domain AL545_20080 PF00890 FAD binding domain AL545_20080 PF02910 Fumarate reductase flavoprotein C-term AL545_20085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL545_20090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL545_20095 PF00285 Citrate synthase, C-terminal domain AL545_20100 PF01784 NIF3 (NGG1p interacting factor 3) AL545_20110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL545_20110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL545_20110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL545_20110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL545_20115 PF17206 SeqA protein N-terminal domain AL545_20115 PF03925 SeqA protein C-terminal domain AL545_20120 PF12697 Alpha/beta hydrolase family AL545_20130 PF00258 Flavodoxin AL545_20140 PF01475 Ferric uptake regulator family AL545_20145 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL545_20145 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL545_20150 PF00367 phosphotransferase system, EIIB AL545_20150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL545_20150 PF02378 Phosphotransferase system, EIIC AL545_20160 PF01979 Amidohydrolase family AL545_20165 PF00480 ROK family AL545_20165 PF01047 MarR family AL545_20170 PF02254 TrkA-N domain AL545_20170 PF00999 Sodium/hydrogen exchanger family AL545_20175 PF00733 Asparagine synthase AL545_20175 PF13537 Glutamine amidotransferase domain AL545_20180 PF02357 Transcription termination factor nusG AL545_20185 PF00854 POT family AL545_20190 PF00762 Ferrochelatase AL545_20195 PF05191 Adenylate kinase, active site lid AL545_20200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_20200 PF00183 Hsp90 protein AL545_20205 PF00486 Transcriptional regulatory protein, C terminal AL545_20210 PF17323 Trans-membrane regulatory protein ToxS AL545_20225 PF12850 Calcineurin-like phosphoesterase superfamily domain AL545_20245 PF07556 Protein of unknown function (DUF1538) AL545_20250 PF07556 Protein of unknown function (DUF1538) AL545_20255 PF01370 NAD dependent epimerase/dehydratase family AL545_20255 PF08338 Domain of unknown function (DUF1731) AL545_20260 PF00106 short chain dehydrogenase AL545_20270 PF00085 Thioredoxin AL545_20275 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AL545_20275 PF13176 Tetratricopeptide repeat AL545_20280 PF01270 Glycosyl hydrolases family 8 AL545_20285 PF03170 Bacterial cellulose synthase subunit AL545_20290 PF00535 Glycosyl transferase family 2 AL545_20290 PF03552 Cellulose synthase AL545_20290 PF07238 PilZ domain AL545_20295 PF06564 Cellulose biosynthesis protein BcsQ AL545_20305 PF10995 Cellulose biosynthesis GIL AL545_20310 PF11658 Cellulose biosynthesis protein BcsG AL545_20315 PF16200 C-terminal region of band_7 AL545_20315 PF01145 SPFH domain / Band 7 family AL545_20335 PF03573 outer membrane porin, OprD family AL545_20340 PF03120 NAD-dependent DNA ligase OB-fold domain AL545_20340 PF00533 BRCA1 C Terminus (BRCT) domain AL545_20340 PF01653 NAD-dependent DNA ligase adenylation domain AL545_20340 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL545_20340 PF12826 Helix-hairpin-helix motif AL545_20345 PF04354 ZipA, C-terminal FtsZ-binding domain AL545_20355 PF00291 Pyridoxal-phosphate dependent enzyme AL545_20365 PF00381 PTS HPr component phosphorylation site AL545_20370 PF02896 PEP-utilising enzyme, TIM barrel domain AL545_20370 PF00391 PEP-utilising enzyme, mobile domain AL545_20370 PF05524 PEP-utilising enzyme, N-terminal AL545_20375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL545_20380 PF00700 Bacterial flagellin C-terminal helical region AL545_20380 PF00669 Bacterial flagellin N-terminal helical region AL545_20380 PF07196 Flagellin hook IN motif AL545_20385 PF00700 Bacterial flagellin C-terminal helical region AL545_20385 PF00669 Bacterial flagellin N-terminal helical region AL545_20385 PF07196 Flagellin hook IN motif AL545_20390 PF07196 Flagellin hook IN motif AL545_20390 PF00700 Bacterial flagellin C-terminal helical region AL545_20390 PF00669 Bacterial flagellin N-terminal helical region AL545_20395 PF00669 Bacterial flagellin N-terminal helical region AL545_20400 PF07196 Flagellin hook IN motif AL545_20400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_20405 PF10135 Rod binding protein AL545_20405 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL545_20410 PF02119 Flagellar P-ring protein AL545_20415 PF02107 Flagellar L-ring protein AL545_20420 PF00460 Flagella basal body rod protein AL545_20420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_20425 PF00460 Flagella basal body rod protein AL545_20425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_20430 PF07559 Flagellar basal body protein FlaE AL545_20430 PF00460 Flagella basal body rod protein AL545_20430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_20435 PF13861 FlgD Tudor-like domain AL545_20435 PF13860 FlgD Ig-like domain AL545_20435 PF03963 Flagellar hook capping protein - N-terminal region AL545_20440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL545_20440 PF00460 Flagella basal body rod protein AL545_20445 PF00460 Flagella basal body rod protein AL545_20450 PF01739 CheR methyltransferase, SAM binding domain AL545_20450 PF03705 CheR methyltransferase, all-alpha domain AL545_20455 PF00072 Response regulator receiver domain AL545_20455 PF01584 CheW-like domain AL545_20500 PF01389 OmpA-like transmembrane domain AL545_20500 PF00691 OmpA family AL545_20505 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL545_20510 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL545_20515 PF13609 Gram-negative porin AL545_20525 PF00403 Heavy-metal-associated domain AL545_20540 PF03173 Putative carbohydrate binding domain AL545_20540 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL545_20540 PF00728 Glycosyl hydrolase family 20, catalytic domain AL545_20540 PF02838 Glycosyl hydrolase family 20, domain 2 AL545_20565 PF01713 Smr domain AL545_20570 PF01479 S4 domain AL545_20570 PF00849 RNA pseudouridylate synthase AL545_20575 PF04073 Aminoacyl-tRNA editing domain AL545_20580 PF02872 5'-nucleotidase, C-terminal domain AL545_20580 PF00149 Calcineurin-like phosphoesterase AL545_20585 PF00793 DAHP synthetase I family AL545_20590 PF13369 Transglutaminase-like superfamily AL545_20595 PF04247 Invasion gene expression up-regulator, SirB AL545_20600 PF13847 Methyltransferase domain AL545_20600 PF17827 PrmC N-terminal domain AL545_20605 PF03462 PCRF domain AL545_20605 PF00472 RF-1 domain AL545_20610 PF01488 Shikimate / quinate 5-dehydrogenase AL545_20610 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL545_20610 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL545_20615 PF03550 Outer membrane lipoprotein LolB AL545_20620 PF08544 GHMP kinases C terminal AL545_20620 PF00288 GHMP kinases N terminal domain AL545_20625 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL545_20625 PF14572 Phosphoribosyl synthetase-associated domain AL545_20630 PF01195 Peptidyl-tRNA hydrolase AL545_20635 PF01926 50S ribosome-binding GTPase AL545_20635 PF06071 Protein of unknown function (DUF933) AL545_20745 PF01494 FAD binding domain AL545_20755 PF01938 TRAM domain AL545_20755 PF04055 Radical SAM superfamily AL545_20755 PF00919 Uncharacterized protein family UPF0004 AL545_20760 PF02562 PhoH-like protein AL545_20765 PF02130 Uncharacterized protein family UPF0054 AL545_20770 PF00571 CBS domain AL545_20770 PF03471 Transporter associated domain AL545_20775 PF00795 Carbon-nitrogen hydrolase AL545_20780 PF07295 Zinc-ribbon containing domain AL545_20785 PF13603 Leucyl-tRNA synthetase, Domain 2 AL545_20785 PF08264 Anticodon-binding domain of tRNA AL545_20785 PF00133 tRNA synthetases class I (I, L, M and V) AL545_20790 PF04390 Lipopolysaccharide-assembly AL545_20795 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL545_20795 PF06144 DNA polymerase III, delta subunit AL545_20805 PF02590 Predicted SPOUT methyltransferase AL545_20810 PF00905 Penicillin binding protein transpeptidase domain AL545_20810 PF03717 Penicillin-binding Protein dimerisation domain AL545_20815 PF01098 Cell cycle protein AL545_20820 PF03330 Lytic transglycolase AL545_20820 PF05036 Sporulation related domain AL545_20825 PF07943 Penicillin-binding protein 5, C-terminal domain AL545_20825 PF00768 D-alanyl-D-alanine carboxypeptidase AL545_20830 PF04359 Protein of unknown function (DUF493) AL545_20835 PF03099 Biotin/lipoate A/B protein ligase family AL545_20840 PF04055 Radical SAM superfamily AL545_20840 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL545_20845 PF00464 Serine hydroxymethyltransferase AL545_20850 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AL545_20850 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL545_20865 PF00128 Alpha amylase, catalytic domain AL545_20865 PF16657 Maltogenic Amylase, C-terminal domain AL545_20870 PF02378 Phosphotransferase system, EIIC AL545_20870 PF00367 phosphotransferase system, EIIB AL545_20875 PF00356 Bacterial regulatory proteins, lacI family AL545_20885 PF00005 ABC transporter AL545_20885 PF09383 NIL domain AL545_20890 PF00528 Binding-protein-dependent transport system inner membrane component AL545_20895 PF03180 NLPA lipoprotein AL545_20900 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL545_20905 PF07348 Syd protein (SUKH-2) AL545_20910 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL545_20910 PF14489 QueF-like protein AL545_20920 PF00563 EAL domain AL545_20920 PF00990 Diguanylate cyclase, GGDEF domain AL545_20920 PF03707 Bacterial signalling protein N terminal repeat AL545_20925 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL545_20925 PF03641 Possible lysine decarboxylase AL545_20925 PF11892 Domain of unknown function (DUF3412) AL545_20930 PF01367 5'-3' exonuclease, C-terminal SAM fold AL545_20930 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL545_20940 PF18125 RlmM ferredoxin-like domain AL545_20940 PF01728 FtsJ-like methyltransferase AL545_20945 PF04241 Protein of unknown function (DUF423) AL545_20955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_20955 PF03466 LysR substrate binding domain AL545_20960 PF02568 Thiamine biosynthesis protein (ThiI) AL545_20960 PF02926 THUMP domain AL545_20965 PF00691 OmpA family AL545_20965 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL545_20970 PF01618 MotA/TolQ/ExbB proton channel family AL545_20975 PF02609 Exonuclease VII small subunit AL545_20980 PF00348 Polyprenyl synthetase AL545_20985 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL545_20985 PF02780 Transketolase, C-terminal domain AL545_20985 PF02779 Transketolase, pyrimidine binding domain AL545_20990 PF04608 Phosphatidylglycerophosphatase A AL545_20995 PF02769 AIR synthase related protein, C-terminal domain AL545_20995 PF00586 AIR synthase related protein, N-terminal domain AL545_21000 PF01029 NusB family AL545_21005 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL545_21010 PF00925 GTP cyclohydrolase II AL545_21010 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL545_21015 PF00677 Lumazine binding domain AL545_21020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL545_21020 PF01872 RibD C-terminal domain AL545_21025 PF03477 ATP cone domain AL545_21030 PF00171 Aldehyde dehydrogenase family AL545_21035 PF00696 Amino acid kinase family AL545_21035 PF01472 PUA domain AL545_21040 PF07417 Sigma factor-binding transcriptional regulator Crl AL545_21050 PF00156 Phosphoribosyl transferase domain AL545_21055 PF00860 Permease family AL545_21060 PF07687 Peptidase dimerisation domain AL545_21060 PF01546 Peptidase family M20/M25/M40 AL545_21075 PF07715 TonB-dependent Receptor Plug Domain AL545_21075 PF00593 TonB dependent receptor AL545_21090 PF02769 AIR synthase related protein, C-terminal domain AL545_21090 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL545_21090 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL545_21095 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_21095 PF01464 Transglycosylase SLT domain AL545_21105 PF14437 MafB19-like deaminase AL545_21110 PF03806 AbgT putative transporter family AL545_21145 PF00226 DnaJ domain AL545_21145 PF01556 DnaJ C terminal domain AL545_21145 PF00684 DnaJ central domain AL545_21150 PF00012 Hsp70 protein AL545_21155 PF00375 Sodium:dicarboxylate symporter family AL545_21160 PF01025 GrpE AL545_21165 PF01513 ATP-NAD kinase AL545_21175 PF02463 RecF/RecN/SMC N terminal domain AL545_21185 PF04355 SmpA / OmlA family AL545_21190 PF03658 RnfH family Ubiquitin AL545_21195 PF03364 Polyketide cyclase / dehydrase and lipid transport AL545_21200 PF01668 SmpB protein AL545_21215 PF00075 RNase H AL545_21235 PF00239 Resolvase, N terminal domain AL545_21235 PF02796 Helix-turn-helix domain of resolvase AL545_21260 PF03466 LysR substrate binding domain AL545_21260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_21265 PF00795 Carbon-nitrogen hydrolase AL545_21265 PF00583 Acetyltransferase (GNAT) family AL545_21285 PF00202 Aminotransferase class-III AL545_21290 PF01053 Cys/Met metabolism PLP-dependent enzyme AL545_21300 PF01266 FAD dependent oxidoreductase AL545_21305 PF01235 Sodium:alanine symporter family AL545_21310 PF01184 GPR1/FUN34/yaaH family AL545_21315 PF00704 Glycosyl hydrolases family 18 AL545_21315 PF06483 Chitinase C AL545_21320 PF03553 Na+/H+ antiporter family AL545_21325 PF00117 Glutamine amidotransferase class-I AL545_21325 PF00958 GMP synthase C terminal domain AL545_21325 PF02540 NAD synthase AL545_21330 PF00571 CBS domain AL545_21330 PF00478 IMP dehydrogenase / GMP reductase domain AL545_21335 PF13742 OB-fold nucleic acid binding domain AL545_21335 PF02601 Exonuclease VII, large subunit AL545_21350 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL545_21350 PF01926 50S ribosome-binding GTPase AL545_21355 PF13360 PQQ-like domain AL545_21360 PF09976 Tetratricopeptide repeat-like domain AL545_21365 PF13393 Histidyl-tRNA synthetase AL545_21365 PF03129 Anticodon binding domain AL545_21370 PF04551 GcpE protein AL545_21375 PF13464 Domain of unknown function (DUF4115) AL545_21380 PF04055 Radical SAM superfamily AL545_21385 PF00334 Nucleoside diphosphate kinase AL545_21390 PF12404 Peptidase AL545_21390 PF00883 Cytosol aminopeptidase family, catalytic domain AL545_21395 PF04384 Iron-sulphur cluster assembly AL545_21400 PF00111 2Fe-2S iron-sulfur cluster binding domain AL545_21405 PF00012 Hsp70 protein AL545_21410 PF07743 HSCB C-terminal oligomerisation domain AL545_21410 PF00226 DnaJ domain AL545_21415 PF01521 Iron-sulphur cluster biosynthesis AL545_21420 PF01592 NifU-like N terminal domain AL545_21425 PF00266 Aminotransferase class-V AL545_21430 PF02082 Transcriptional regulator AL545_21435 PF00588 SpoU rRNA Methylase family AL545_21440 PF00459 Inositol monophosphatase family AL545_21455 PF02355 Protein export membrane protein AL545_21455 PF07549 SecD/SecF GG Motif AL545_21460 PF13721 SecD export protein N-terminal TM region AL545_21460 PF07549 SecD/SecF GG Motif AL545_21460 PF02355 Protein export membrane protein AL545_21465 PF02699 Preprotein translocase subunit AL545_21470 PF01702 Queuine tRNA-ribosyltransferase AL545_21475 PF02547 Queuosine biosynthesis protein AL545_21485 PF00571 CBS domain AL545_21490 PF00463 Isocitrate lyase family AL545_21495 PF01274 Malate synthase AL545_21500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_21500 PF03466 LysR substrate binding domain AL545_21505 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL545_21505 PF00578 AhpC/TSA family AL545_21510 PF03932 CutC family AL545_21515 PF03976 Polyphosphate kinase 2 (PPK2) AL545_21520 PF01895 PhoU domain AL545_21525 PF00005 ABC transporter AL545_21530 PF00528 Binding-protein-dependent transport system inner membrane component AL545_21535 PF00528 Binding-protein-dependent transport system inner membrane component AL545_21540 PF13090 Polyphosphate kinase C-terminal domain 2 AL545_21540 PF02503 Polyphosphate kinase middle domain AL545_21540 PF17941 Polyphosphate kinase C-terminal domain 1 AL545_21540 PF13089 Polyphosphate kinase N-terminal domain AL545_21545 PF02541 Ppx/GppA phosphatase family AL545_21550 PF01797 Transposase IS200 like AL545_21555 PF12849 PBP superfamily domain AL545_21560 PF11808 Phosphate regulon sensor protein PhoR AL545_21560 PF00512 His Kinase A (phospho-acceptor) domain AL545_21560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_21560 PF00989 PAS fold AL545_21565 PF00486 Transcriptional regulatory protein, C terminal AL545_21565 PF00072 Response regulator receiver domain AL545_21575 PF04381 Putative exonuclease, RdgC AL545_21585 PF00037 4Fe-4S binding domain AL545_21600 PF03411 Penicillin-insensitive murein endopeptidase AL545_21650 PF00004 ATPase family associated with various cellular activities (AAA) AL545_21650 PF07724 AAA domain (Cdc48 subfamily) AL545_21650 PF17871 AAA lid domain AL545_21650 PF02861 Clp amino terminal domain, pathogenicity island component AL545_21650 PF10431 C-terminal, D2-small domain, of ClpB protein AL545_21660 PF01479 S4 domain AL545_21660 PF00849 RNA pseudouridylate synthase AL545_21665 PF13525 Outer membrane lipoprotein AL545_21670 PF01464 Transglycosylase SLT domain AL545_21670 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_21675 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL545_21685 PF00800 Prephenate dehydratase AL545_21685 PF01817 Chorismate mutase type II AL545_21690 PF01931 Protein of unknown function DUF84 AL545_21695 PF01371 Trp repressor protein AL545_21700 PF01464 Transglycosylase SLT domain AL545_21700 PF14718 Soluble lytic murein transglycosylase L domain AL545_21705 PF00005 ABC transporter AL545_21705 PF12848 ABC transporter AL545_21710 PF07238 PilZ domain AL545_21715 PF04225 Opacity-associated protein A LysM-like domain AL545_21715 PF01551 Peptidase family M23 AL545_21720 PF02153 Prephenate dehydrogenase AL545_21720 PF01817 Chorismate mutase type II AL545_21725 PF00793 DAHP synthetase I family AL545_21730 PF00933 Glycosyl hydrolase family 3 N terminal domain AL545_21735 PF03702 Anhydro-N-acetylmuramic acid kinase AL545_21740 PF01380 SIS domain AL545_21755 PF02554 Carbon starvation protein CstA AL545_21760 PF06580 Histidine kinase AL545_21760 PF07694 5TMR of 5TMR-LYT AL545_21765 PF00072 Response regulator receiver domain AL545_21765 PF04397 LytTr DNA-binding domain AL545_21775 PF02401 LytB protein AL545_21780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL545_21785 PF01252 Signal peptidase (SPase) II AL545_21790 PF06827 Zinc finger found in FPG and IleRS AL545_21790 PF08264 Anticodon-binding domain of tRNA AL545_21790 PF00133 tRNA synthetases class I (I, L, M and V) AL545_21795 PF01687 Riboflavin kinase AL545_21795 PF06574 FAD synthetase AL545_21800 PF03023 Lipid II flippase MurJ AL545_21805 PF01649 Ribosomal protein S20 AL545_21810 PF01022 Bacterial regulatory protein, arsR family AL545_21815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_21815 PF03466 LysR substrate binding domain AL545_21820 PF02690 Na+/Pi-cotransporter AL545_21830 PF00303 Thymidylate synthase AL545_21840 PF01925 Sulfite exporter TauE/SafE AL545_21845 PF02896 PEP-utilising enzyme, TIM barrel domain AL545_21845 PF01590 GAF domain AL545_21845 PF05524 PEP-utilising enzyme, N-terminal AL545_21845 PF00391 PEP-utilising enzyme, mobile domain AL545_21850 PF00293 NUDIX domain AL545_21855 PF02976 DNA mismatch repair enzyme MutH AL545_21865 PF00248 Aldo/keto reductase family AL545_21875 PF02954 Bacterial regulatory protein, Fis family AL545_21875 PF00158 Sigma-54 interaction domain AL545_21875 PF00072 Response regulator receiver domain AL545_21880 PF01336 OB-fold nucleic acid binding domain AL545_21880 PF00152 tRNA synthetases class II (D, K and N) AL545_21890 PF01368 DHH family AL545_21890 PF17768 RecJ OB domain AL545_21890 PF02272 DHHA1 domain AL545_21895 PF13098 Thioredoxin-like domain AL545_21895 PF10411 Disulfide bond isomerase protein N-terminus AL545_21900 PF00589 Phage integrase family AL545_21900 PF02899 Phage integrase, N-terminal SAM-like domain AL545_21905 PF00258 Flavodoxin AL545_21910 PF05525 Branched-chain amino acid transport protein AL545_21915 PF05175 Methyltransferase small domain AL545_21920 PF00271 Helicase conserved C-terminal domain AL545_21920 PF00270 DEAD/DEAH box helicase AL545_21925 PF03883 Peroxide stress protein YaaA AL545_21930 PF01235 Sodium:alanine symporter family AL545_21945 PF03167 Uracil DNA glycosylase superfamily AL545_21955 PF01261 Xylose isomerase-like TIM barrel AL545_21960 PF01228 Glycine radical AL545_21970 PF14821 Threonine synthase N terminus AL545_21970 PF00291 Pyridoxal-phosphate dependent enzyme AL545_21975 PF08544 GHMP kinases C terminal AL545_21975 PF00288 GHMP kinases N terminal domain AL545_21980 PF01842 ACT domain AL545_21980 PF03447 Homoserine dehydrogenase, NAD binding domain AL545_21980 PF00696 Amino acid kinase family AL545_21980 PF13840 ACT domain AL545_21980 PF00742 Homoserine dehydrogenase AL545_21995 PF03737 Aldolase/RraA AL545_22010 PF00072 Response regulator receiver domain AL545_22010 PF00486 Transcriptional regulatory protein, C terminal AL545_22020 PF00512 His Kinase A (phospho-acceptor) domain AL545_22020 PF00072 Response regulator receiver domain AL545_22020 PF00989 PAS fold AL545_22020 PF01627 Hpt domain AL545_22020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_22020 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL545_22025 PF00360 Phytochrome region AL545_22025 PF00990 Diguanylate cyclase, GGDEF domain AL545_22025 PF01590 GAF domain AL545_22025 PF00563 EAL domain AL545_22030 PF16199 Radical_SAM C-terminal domain AL545_22030 PF04055 Radical SAM superfamily AL545_22035 PF01493 GXGXG motif AL545_22035 PF04898 Glutamate synthase central domain AL545_22035 PF01645 Conserved region in glutamate synthase AL545_22035 PF00310 Glutamine amidotransferases class-II AL545_22040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL545_22040 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_22045 PF00310 Glutamine amidotransferases class-II AL545_22045 PF01493 GXGXG motif AL545_22045 PF01645 Conserved region in glutamate synthase AL545_22045 PF04898 Glutamate synthase central domain AL545_22050 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_22050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL545_22060 PF01048 Phosphorylase superfamily AL545_22065 PF17113 Regulatory signalling modulator protein AmpE AL545_22065 PF03186 CobD/Cbib protein AL545_22070 PF01497 Periplasmic binding protein AL545_22075 PF03458 UPF0126 domain AL545_22080 PF03466 LysR substrate binding domain AL545_22080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_22085 PF01925 Sulfite exporter TauE/SafE AL545_22100 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL545_22100 PF02142 MGS-like domain AL545_22100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL545_22105 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL545_22105 PF00117 Glutamine amidotransferase class-I AL545_22110 PF05173 Dihydrodipicolinate reductase, C-terminus AL545_22110 PF01113 Dihydrodipicolinate reductase, N-terminus AL545_22115 PF00293 NUDIX domain AL545_22120 PF07517 SecA DEAD-like domain AL545_22120 PF07516 SecA Wing and Scaffold domain AL545_22120 PF01043 SecA preprotein cross-linking domain AL545_22120 PF02810 SEC-C motif AL545_22130 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL545_22135 PF00091 Tubulin/FtsZ family, GTPase domain AL545_22135 PF12327 FtsZ family, C-terminal domain AL545_22140 PF02491 SHS2 domain inserted in FTSA AL545_22145 PF03799 Cell division protein FtsQ AL545_22145 PF08478 POTRA domain, FtsQ-type AL545_22150 PF01225 Mur ligase family, catalytic domain AL545_22150 PF08245 Mur ligase middle domain AL545_22150 PF02875 Mur ligase family, glutamate ligase domain AL545_22155 PF03033 Glycosyltransferase family 28 N-terminal domain AL545_22155 PF04101 Glycosyltransferase family 28 C-terminal domain AL545_22160 PF01098 Cell cycle protein AL545_22165 PF08245 Mur ligase middle domain AL545_22165 PF02875 Mur ligase family, glutamate ligase domain AL545_22170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL545_22170 PF00953 Glycosyl transferase family 4 AL545_22175 PF01225 Mur ligase family, catalytic domain AL545_22175 PF02875 Mur ligase family, glutamate ligase domain AL545_22175 PF08245 Mur ligase middle domain AL545_22180 PF08245 Mur ligase middle domain AL545_22180 PF01225 Mur ligase family, catalytic domain AL545_22180 PF02875 Mur ligase family, glutamate ligase domain AL545_22185 PF00905 Penicillin binding protein transpeptidase domain AL545_22185 PF03717 Penicillin-binding Protein dimerisation domain AL545_22190 PF04999 Cell division protein FtsL AL545_22195 PF01795 MraW methylase family AL545_22210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL545_22215 PF04348 LppC putative lipoprotein AL545_22220 PF02021 Uncharacterised protein family UPF0102 AL545_22225 PF13580 SIS domain AL545_22230 PF04972 BON domain AL545_22235 PF04386 Stringent starvation protein B AL545_22240 PF02798 Glutathione S-transferase, N-terminal domain AL545_22240 PF00043 Glutathione S-transferase, C-terminal domain AL545_22245 PF02167 Cytochrome C1 family AL545_22250 PF00033 Cytochrome b/b6/petB AL545_22250 PF00032 Cytochrome b(C-terminal)/b6/petD AL545_22255 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL545_22255 PF00355 Rieske [2Fe-2S] domain AL545_22260 PF00380 Ribosomal protein S9/S16 AL545_22265 PF00572 Ribosomal protein L13 AL545_22275 PF03969 AFG1-like ATPase AL545_22285 PF06295 Protein of unknown function (DUF1043) AL545_22290 PF00595 PDZ domain AL545_22295 PF13180 PDZ domain AL545_22300 PF00521 DNA gyrase/topoisomerase IV, subunit A AL545_22300 PF03989 DNA gyrase C-terminal domain, beta-propeller AL545_22305 PF01751 Toprim domain AL545_22305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_22305 PF00986 DNA gyrase B subunit, carboxyl terminus AL545_22305 PF00204 DNA gyrase B AL545_22310 PF05728 Uncharacterised protein family (UPF0227) AL545_22315 PF00149 Calcineurin-like phosphoesterase AL545_22320 PF06853 Protein of unknown function (DUF1249) AL545_22325 PF00293 NUDIX domain AL545_22330 PF02321 Outer membrane efflux protein AL545_22335 PF01467 Cytidylyltransferase-like AL545_22335 PF00294 pfkB family carbohydrate kinase AL545_22340 PF03710 Glutamate-ammonia ligase adenylyltransferase AL545_22340 PF08335 GlnD PII-uridylyltransferase AL545_22345 PF00672 HAMP domain AL545_22345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_22345 PF02743 Cache domain AL545_22355 PF01928 CYTH domain AL545_22360 PF01865 Protein of unknown function DUF47 AL545_22365 PF01384 Phosphate transporter family AL545_22370 PF08239 Bacterial SH3 domain AL545_22385 PF13401 AAA domain AL545_22385 PF01471 Putative peptidoglycan binding domain AL545_22390 PF12627 Probable RNA and SrmB- binding site of polymerase A AL545_22390 PF01743 Poly A polymerase head domain AL545_22390 PF01966 HD domain AL545_22395 PF02673 Bacitracin resistance protein BacA AL545_22400 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL545_22405 PF02152 Dihydroneopterin aldolase AL545_22410 PF02660 Glycerol-3-phosphate acyltransferase AL545_22415 PF00561 alpha/beta hydrolase fold AL545_22420 PF00814 Glycoprotease family AL545_22425 PF01165 Ribosomal protein S21 AL545_22430 PF09424 Yqey-like protein AL545_22435 PF01807 CHC2 zinc finger AL545_22435 PF08275 DNA primase catalytic core, N-terminal domain AL545_22435 PF08278 DNA primase DnaG DnaB-binding AL545_22435 PF10410 DnaB-helicase binding domain of primase AL545_22440 PF03979 Sigma-70 factor, region 1.1 AL545_22440 PF04542 Sigma-70 region 2 AL545_22440 PF04539 Sigma-70 region 3 AL545_22440 PF04546 Sigma-70, non-essential region AL545_22440 PF04545 Sigma-70, region 4 AL545_22440 PF00140 Sigma-70 factor, region 1.2 AL545_22450 PF03180 NLPA lipoprotein AL545_22470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL545_22470 PF02378 Phosphotransferase system, EIIC AL545_22470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL545_22475 PF01232 Mannitol dehydrogenase Rossmann domain AL545_22475 PF08125 Mannitol dehydrogenase C-terminal domain AL545_22480 PF05068 Mannitol repressor AL545_22485 PF02954 Bacterial regulatory protein, Fis family AL545_22485 PF00158 Sigma-54 interaction domain AL545_22485 PF00989 PAS fold AL545_22490 PF05524 PEP-utilising enzyme, N-terminal AL545_22490 PF02896 PEP-utilising enzyme, TIM barrel domain AL545_22490 PF00391 PEP-utilising enzyme, mobile domain AL545_22495 PF02734 DAK2 domain AL545_22500 PF02733 Dak1 domain AL545_22505 PF00465 Iron-containing alcohol dehydrogenase AL545_22510 PF01380 SIS domain AL545_22515 PF08220 DeoR-like helix-turn-helix domain AL545_22515 PF00455 DeoR C terminal sensor domain AL545_22520 PF00224 Pyruvate kinase, barrel domain AL545_22520 PF02887 Pyruvate kinase, alpha/beta domain AL545_22530 PF07694 5TMR of 5TMR-LYT AL545_22530 PF00990 Diguanylate cyclase, GGDEF domain AL545_22535 PF10369 Small subunit of acetolactate synthase AL545_22540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL545_22540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL545_22540 PF00205 Thiamine pyrophosphate enzyme, central domain AL545_22545 PF00501 AMP-binding enzyme AL545_22550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_22550 PF03466 LysR substrate binding domain AL545_22560 PF01569 PAP2 superfamily AL545_22575 PF00682 HMGL-like AL545_22575 PF08502 LeuA allosteric (dimerisation) domain AL545_22580 PF00180 Isocitrate/isopropylmalate dehydrogenase AL545_22585 PF00330 Aconitase family (aconitate hydratase) AL545_22590 PF00694 Aconitase C-terminal domain AL545_22600 PF00226 DnaJ domain AL545_22600 PF05099 Tellurite resistance protein TerB AL545_22605 PF03968 OstA-like protein AL545_22605 PF04453 LPS transport system D AL545_22610 PF09312 SurA N-terminal domain AL545_22615 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL545_22620 PF00398 Ribosomal RNA adenine dimethylase AL545_22625 PF04379 ApaG domain AL545_22630 PF00149 Calcineurin-like phosphoesterase AL545_22635 PF00186 Dihydrofolate reductase AL545_22640 PF12821 Threonine/Serine exporter, ThrE AL545_22645 PF06738 Putative threonine/serine exporter AL545_22650 PF01018 GTP1/OBG AL545_22650 PF01926 50S ribosome-binding GTPase AL545_22655 PF01016 Ribosomal L27 protein AL545_22660 PF00829 Ribosomal prokaryotic L21 protein AL545_22665 PF00348 Polyprenyl synthetase AL545_22675 PF00056 lactate/malate dehydrogenase, NAD binding domain AL545_22675 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL545_22680 PF02863 Arginine repressor, C-terminal domain AL545_22680 PF01316 Arginine repressor, DNA binding domain AL545_22690 PF16868 NMT1-like family AL545_22710 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL545_22715 PF03466 LysR substrate binding domain AL545_22715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_22720 PF00005 ABC transporter AL545_22725 PF00528 Binding-protein-dependent transport system inner membrane component AL545_22735 PF02441 Flavoprotein AL545_22740 PF08245 Mur ligase middle domain AL545_22740 PF02875 Mur ligase family, glutamate ligase domain AL545_22740 PF01225 Mur ligase family, catalytic domain AL545_22750 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL545_22755 PF00719 Inorganic pyrophosphatase AL545_22765 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL545_22770 PF04357 TamB, inner membrane protein subunit of TAM complex AL545_22775 PF01103 Surface antigen AL545_22775 PF17243 POTRA domain TamA domain 1 AL545_22775 PF07244 Surface antigen variable number repeat AL545_22780 PF01625 Peptide methionine sulfoxide reductase AL545_22785 PF06526 Protein of unknown function (DUF1107) AL545_22790 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL545_22795 PF10795 Protein of unknown function (DUF2607) AL545_22805 PF00005 ABC transporter AL545_22830 PF02080 TrkA-C domain AL545_22830 PF03600 Citrate transporter AL545_22835 PF00009 Elongation factor Tu GTP binding domain AL545_22840 PF01507 Phosphoadenosine phosphosulfate reductase family AL545_22845 PF14824 Sirohaem biosynthesis protein central AL545_22845 PF10414 Sirohaem synthase dimerisation region AL545_22845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL545_22850 PF02872 5'-nucleotidase, C-terminal domain AL545_22850 PF00149 Calcineurin-like phosphoesterase AL545_22860 PF00271 Helicase conserved C-terminal domain AL545_22860 PF03880 DbpA RNA binding domain AL545_22860 PF00270 DEAD/DEAH box helicase AL545_22865 PF13673 Acetyltransferase (GNAT) domain AL545_22875 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL545_22875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL545_22885 PF01196 Ribosomal protein L17 AL545_22890 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL545_22890 PF01000 RNA polymerase Rpb3/RpoA insert domain AL545_22890 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL545_22895 PF00163 Ribosomal protein S4/S9 N-terminal domain AL545_22895 PF01479 S4 domain AL545_22900 PF00411 Ribosomal protein S11 AL545_22905 PF00416 Ribosomal protein S13/S18 AL545_22910 PF00444 Ribosomal protein L36 AL545_22915 PF00344 SecY translocase AL545_22925 PF00327 Ribosomal protein L30p/L7e AL545_22930 PF00333 Ribosomal protein S5, N-terminal domain AL545_22930 PF03719 Ribosomal protein S5, C-terminal domain AL545_22935 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL545_22940 PF00347 Ribosomal protein L6 AL545_22945 PF00410 Ribosomal protein S8 AL545_22950 PF00253 Ribosomal protein S14p/S29e AL545_22955 PF00673 ribosomal L5P family C-terminus AL545_22955 PF00281 Ribosomal protein L5 AL545_22960 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL545_22960 PF00467 KOW motif AL545_22965 PF00238 Ribosomal protein L14p/L23e AL545_22970 PF00366 Ribosomal protein S17 AL545_22975 PF00831 Ribosomal L29 protein AL545_22980 PF00252 Ribosomal protein L16p/L10e AL545_22985 PF07650 KH domain AL545_22985 PF00189 Ribosomal protein S3, C-terminal domain AL545_22990 PF00237 Ribosomal protein L22p/L17e AL545_22995 PF00203 Ribosomal protein S19 AL545_23000 PF00181 Ribosomal Proteins L2, RNA binding domain AL545_23000 PF03947 Ribosomal Proteins L2, C-terminal domain AL545_23005 PF00276 Ribosomal protein L23 AL545_23010 PF00573 Ribosomal protein L4/L1 family AL545_23015 PF00297 Ribosomal protein L3 AL545_23020 PF00338 Ribosomal protein S10p/S20e AL545_23025 PF01197 Ribosomal protein L31 AL545_23035 PF18074 Primosomal protein N C-terminal domain AL545_23035 PF00271 Helicase conserved C-terminal domain AL545_23035 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL545_23035 PF17764 3′ DNA-binding domain (3′BD) AL545_23035 PF00270 DEAD/DEAH box helicase AL545_23040 PF00356 Bacterial regulatory proteins, lacI family AL545_23050 PF00227 Proteasome subunit AL545_23055 PF00004 ATPase family associated with various cellular activities (AAA) AL545_23055 PF07724 AAA domain (Cdc48 subfamily) AL545_23060 PF01040 UbiA prenyltransferase family AL545_23065 PF03737 Aldolase/RraA AL545_23070 PF06005 Cell division protein ZapB AL545_23075 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL545_23080 PF00455 DeoR C terminal sensor domain AL545_23080 PF08220 DeoR-like helix-turn-helix domain AL545_23095 PF05656 Protein of unknown function (DUF805) AL545_23105 PF00121 Triosephosphate isomerase AL545_23110 PF00483 Nucleotidyl transferase AL545_23115 PF01370 NAD dependent epimerase/dehydratase family AL545_23120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL545_23120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL545_23120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL545_23140 PF13439 Glycosyltransferase Family 4 AL545_23140 PF00534 Glycosyl transferases group 1 AL545_23160 PF01565 FAD binding domain AL545_23160 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL545_23165 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL545_23170 PF00953 Glycosyl transferase family 4 AL545_23180 PF02397 Bacterial sugar transferase AL545_23185 PF00535 Glycosyl transferase family 2 AL545_23195 PF00534 Glycosyl transferases group 1 AL545_23195 PF13439 Glycosyltransferase Family 4 AL545_23205 PF00534 Glycosyl transferases group 1 AL545_23205 PF13439 Glycosyltransferase Family 4 AL545_23220 PF01943 Polysaccharide biosynthesis protein AL545_23230 PF02563 Polysaccharide biosynthesis/export protein AL545_23230 PF10531 SLBB domain AL545_23230 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL545_23255 PF06082 Exopolysaccharide biosynthesis protein YbjH AL545_23260 PF01370 NAD dependent epimerase/dehydratase family AL545_23265 PF03279 Bacterial lipid A biosynthesis acyltransferase AL545_23275 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL545_23280 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL545_23285 PF07836 DmpG-like communication domain AL545_23285 PF00682 HMGL-like AL545_23310 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL545_23320 PF05523 WxcM-like, C-terminal AL545_23325 PF00483 Nucleotidyl transferase AL545_23330 PF16363 GDP-mannose 4,6 dehydratase AL545_23340 PF01219 Prokaryotic diacylglycerol kinase AL545_23345 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL545_23350 PF00535 Glycosyl transferase family 2 AL545_23355 PF00535 Glycosyl transferase family 2 AL545_23360 PF05686 Glycosyl transferase family 90 AL545_23365 PF01467 Cytidylyltransferase-like AL545_23370 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL545_23370 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL545_23370 PF06827 Zinc finger found in FPG and IleRS AL545_23380 PF00471 Ribosomal protein L33 AL545_23385 PF00830 Ribosomal L28 family AL545_23390 PF04002 RadC-like JAB domain AL545_23395 PF00672 HAMP domain AL545_23395 PF17200 Single Cache domain 2 AL545_23395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL545_23405 PF04127 DNA / pantothenate metabolism flavoprotein AL545_23405 PF02441 Flavoprotein AL545_23410 PF00440 Bacterial regulatory proteins, tetR family AL545_23415 PF03279 Bacterial lipid A biosynthesis acyltransferase AL545_23425 PF03725 3' exoribonuclease family, domain 2 AL545_23425 PF01138 3' exoribonuclease family, domain 1 AL545_23435 PF03755 YicC-like family, N-terminal region AL545_23435 PF08340 Domain of unknown function (DUF1732) AL545_23445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_23445 PF00005 ABC transporter AL545_23450 PF00005 ABC transporter AL545_23450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_23455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_23460 PF12911 N-terminal TM domain of oligopeptide transport permease C AL545_23460 PF00528 Binding-protein-dependent transport system inner membrane component AL545_23465 PF00528 Binding-protein-dependent transport system inner membrane component AL545_23475 PF00593 TonB dependent receptor AL545_23475 PF07715 TonB-dependent Receptor Plug Domain AL545_23490 PF01618 MotA/TolQ/ExbB proton channel family AL545_23495 PF02472 Biopolymer transport protein ExbD/TolR AL545_23515 PF00625 Guanylate kinase AL545_23525 PF02824 TGS domain AL545_23525 PF13291 ACT domain AL545_23525 PF04607 Region found in RelA / SpoT proteins AL545_23530 PF00588 SpoU rRNA Methylase family AL545_23530 PF12105 SpoU, rRNA methylase, C-terminal AL545_23535 PF00271 Helicase conserved C-terminal domain AL545_23535 PF17191 RecG wedge domain AL545_23535 PF00270 DEAD/DEAH box helicase AL545_23540 PF00860 Permease family AL545_23545 PF00672 HAMP domain AL545_23545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_23545 PF00512 His Kinase A (phospho-acceptor) domain AL545_23550 PF00072 Response regulator receiver domain AL545_23550 PF00486 Transcriptional regulatory protein, C terminal AL545_23560 PF01272 Transcription elongation factor, GreA/GreB, C-term AL545_23560 PF03449 Transcription elongation factor, N-terminal AL545_23570 PF09371 Tex-like protein N-terminal domain AL545_23570 PF00575 S1 RNA binding domain AL545_23570 PF16921 Tex protein YqgF-like domain AL545_23570 PF17674 HHH domain AL545_23580 PF00561 alpha/beta hydrolase fold AL545_23585 PF00156 Phosphoribosyl transferase domain AL545_23590 PF01521 Iron-sulphur cluster biosynthesis AL545_23590 PF01106 NifU-like domain AL545_23595 PF00293 NUDIX domain AL545_23600 PF00459 Inositol monophosphatase family AL545_23605 PF01203 Type II secretion system (T2SS), protein N AL545_23610 PF04612 Type II secretion system (T2SS), protein M AL545_23615 PF12693 GspL periplasmic domain AL545_23615 PF05134 Type II secretion system (T2SS), protein L AL545_23620 PF03934 Type II secretion system (T2SS), protein K AL545_23625 PF11612 Type II secretion system (T2SS), protein J AL545_23625 PF07963 Prokaryotic N-terminal methylation motif AL545_23630 PF07963 Prokaryotic N-terminal methylation motif AL545_23630 PF02501 Type II secretion system (T2SS), protein I AL545_23635 PF12019 Type II transport protein GspH AL545_23640 PF08334 Type II secretion system (T2SS), protein G AL545_23640 PF07963 Prokaryotic N-terminal methylation motif AL545_23645 PF00482 Type II secretion system (T2SS), protein F AL545_23650 PF00437 Type II/IV secretion system protein AL545_23655 PF00263 Bacterial type II and III secretion system protein AL545_23655 PF03958 Bacterial type II/III secretion system short domain AL545_23660 PF11356 Type II secretion system protein C AL545_23665 PF01479 S4 domain AL545_23670 PF01430 Hsp33 protein AL545_23675 PF01293 Phosphoenolpyruvate carboxykinase AL545_23685 PF09500 Putative thioesterase (yiiD_Cterm) AL545_23685 PF00583 Acetyltransferase (GNAT) family AL545_23690 PF02580 D-Tyr-tRNA(Tyr) deacylase AL545_23695 PF03631 Virulence factor BrkB AL545_23705 PF08299 Bacterial dnaA protein helix-turn-helix AL545_23705 PF00308 Bacterial dnaA protein AL545_23715 PF00120 Glutamine synthetase, catalytic domain AL545_23715 PF03951 Glutamine synthetase, beta-Grasp domain AL545_23725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL545_23725 PF00512 His Kinase A (phospho-acceptor) domain AL545_23725 PF00989 PAS fold AL545_23730 PF00158 Sigma-54 interaction domain AL545_23730 PF02954 Bacterial regulatory protein, Fis family AL545_23730 PF00072 Response regulator receiver domain AL545_23735 PF03707 Bacterial signalling protein N terminal repeat AL545_23735 PF00563 EAL domain AL545_23735 PF00990 Diguanylate cyclase, GGDEF domain AL545_23740 PF00962 Adenosine/AMP deaminase AL545_23745 PF04055 Radical SAM superfamily AL545_23745 PF06969 HemN C-terminal domain AL545_23750 PF10675 Protein of unknown function (DUF2489) AL545_23755 PF04220 Der GTPase activator (YihI) AL545_23770 PF00034 Cytochrome c AL545_23775 PF01926 50S ribosome-binding GTPase AL545_23780 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL545_23780 PF00476 DNA polymerase family A AL545_23780 PF01612 3'-5' exonuclease AL545_23780 PF01367 5'-3' exonuclease, C-terminal SAM fold AL545_23790 PF00583 Acetyltransferase (GNAT) family AL545_23795 PF00490 Delta-aminolevulinic acid dehydratase AL545_23805 PF01026 TatD related DNase AL545_23820 PF00902 Sec-independent protein translocase protein (TatC) AL545_23825 PF02416 mttA/Hcf106 family AL545_23830 PF02416 mttA/Hcf106 family AL545_23835 PF03109 ABC1 family AL545_23840 PF02036 SCP-2 sterol transfer family AL545_23845 PF01209 ubiE/COQ5 methyltransferase family AL545_23850 PF02646 RmuC family AL545_23860 PF03707 Bacterial signalling protein N terminal repeat AL545_23860 PF00990 Diguanylate cyclase, GGDEF domain AL545_23860 PF00563 EAL domain AL545_23865 PF01594 AI-2E family transporter AL545_23895 PF00781 Diacylglycerol kinase catalytic domain AL545_23920 PF00158 Sigma-54 interaction domain AL545_23920 PF02954 Bacterial regulatory protein, Fis family AL545_23920 PF01590 GAF domain AL545_23930 PF10625 Universal stress protein B (UspB) AL545_23935 PF00210 Ferritin-like domain AL545_23940 PF00582 Universal stress protein family AL545_23945 PF00892 EamA-like transporter family AL545_23955 PF04445 Putative SAM-dependent methyltransferase AL545_23960 PF08448 PAS fold AL545_23960 PF00990 Diguanylate cyclase, GGDEF domain AL545_23960 PF00563 EAL domain AL545_23965 PF01037 Lrp/AsnC ligand binding domain AL545_23970 PF01432 Peptidase family M3 AL545_23975 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL545_23980 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL545_23980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL545_24020 PF03466 LysR substrate binding domain AL545_24020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_24025 PF01048 Phosphorylase superfamily AL545_24030 PF01081 KDPG and KHG aldolase AL545_24035 PF02447 GntP family permease AL545_24040 PF01202 Shikimate kinase AL545_24045 PF00920 Dehydratase family AL545_24050 PF00893 Small Multidrug Resistance protein AL545_24055 PF00893 Small Multidrug Resistance protein AL545_24060 PF03466 LysR substrate binding domain AL545_24060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_24065 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL545_24065 PF00356 Bacterial regulatory proteins, lacI family AL545_24070 PF00069 Protein kinase domain AL545_24105 PF12911 N-terminal TM domain of oligopeptide transport permease C AL545_24105 PF00528 Binding-protein-dependent transport system inner membrane component AL545_24115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL545_24120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL545_24120 PF00005 ABC transporter AL545_24130 PF13419 Haloacid dehalogenase-like hydrolase AL545_24160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL545_24165 PF00580 UvrD/REP helicase N-terminal domain AL545_24165 PF13361 UvrD-like helicase C-terminal domain AL545_24170 PF00440 Bacterial regulatory proteins, tetR family AL545_24170 PF16295 Tetracyclin repressor-like, C-terminal domain AL545_24175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL545_24180 PF00873 AcrB/AcrD/AcrF family AL545_24185 PF04380 Membrane fusogenic activity AL545_24190 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL545_24190 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL545_24195 PF03466 LysR substrate binding domain AL545_24195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_24230 PF00132 Bacterial transferase hexapeptide (six repeats) AL545_24235 PF07369 Protein of unknown function (DUF1488) AL545_24240 PF08501 Shikimate dehydrogenase substrate binding domain AL545_24240 PF01488 Shikimate / quinate 5-dehydrogenase AL545_24240 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL545_24245 PF01218 Coproporphyrinogen III oxidase AL545_24250 PF01300 Telomere recombination AL545_24255 PF00731 AIR carboxylase AL545_24260 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL545_24260 PF02222 ATP-grasp domain AL545_24265 PF01396 Topoisomerase DNA binding C4 zinc finger AL545_24275 PF04361 Protein of unknown function (DUF494) AL545_24280 PF17782 DprA winged helix domain AL545_24280 PF02481 DNA recombination-mediator protein A AL545_24290 PF01327 Polypeptide deformylase AL545_24295 PF02911 Formyl transferase, C-terminal domain AL545_24295 PF00551 Formyl transferase AL545_24300 PF01029 NusB family AL545_24300 PF01189 16S rRNA methyltransferase RsmB/F AL545_24305 PF02080 TrkA-C domain AL545_24305 PF02254 TrkA-N domain AL545_24310 PF02386 Cation transport protein AL545_24320 PF03006 Haemolysin-III related AL545_24325 PF07070 SpoOM protein AL545_24335 PF06288 Protein of unknown function (DUF1040) AL545_24340 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL545_24340 PF13746 4Fe-4S dicluster domain AL545_24340 PF12801 4Fe-4S binding domain AL545_24345 PF01636 Phosphotransferase enzyme family AL545_24350 PF01323 DSBA-like thioredoxin domain AL545_24355 PF01553 Acyltransferase AL545_24365 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL545_24365 PF01078 Magnesium chelatase, subunit ChlI AL545_24370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL545_24370 PF00205 Thiamine pyrophosphate enzyme, central domain AL545_24370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL545_24380 PF01063 Amino-transferase class IV AL545_24385 PF00920 Dehydratase family AL545_24390 PF00585 C-terminal regulatory domain of Threonine dehydratase AL545_24390 PF00291 Pyridoxal-phosphate dependent enzyme AL545_24395 PF03466 LysR substrate binding domain AL545_24395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL545_24400 PF07690 Major Facilitator Superfamily AL545_24405 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_24410 PF00528 Binding-protein-dependent transport system inner membrane component AL545_24415 PF12804 MobA-like NTP transferase domain AL545_24415 PF00132 Bacterial transferase hexapeptide (six repeats) AL545_24420 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL545_24420 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL545_24425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL545_24425 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL545_24430 PF00231 ATP synthase AL545_24435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL545_24435 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL545_24435 PF00306 ATP synthase alpha/beta chain, C terminal domain AL545_24440 PF00213 ATP synthase delta (OSCP) subunit AL545_24445 PF00430 ATP synthase B/B' CF(0) AL545_24450 PF00137 ATP synthase subunit C AL545_24455 PF00119 ATP synthase A chain AL545_24460 PF03899 ATP synthase I chain AL545_24465 PF02195 ParB-like nuclease domain AL545_24465 PF17762 HTH domain found in ParB protein AL545_24470 PF13614 AAA domain AL545_24475 PF02527 rRNA small subunit methyltransferase G AL545_24480 PF01134 Glucose inhibited division protein A AL545_24480 PF13932 GidA associated domain AL545_24485 PF00258 Flavodoxin AL545_24490 PF10396 GTP-binding protein TrmE N-terminus AL545_24490 PF12631 MnmE helical domain AL545_24490 PF01926 50S ribosome-binding GTPase AL545_24495 PF02096 60Kd inner membrane protein AL545_24495 PF14849 YidC periplasmic domain AL545_24500 PF01809 Putative membrane protein insertion efficiency factor AL545_24505 PF00825 Ribonuclease P AL545_24510 PF00468 Ribosomal protein L34 AL545_24515 PF00005 ABC transporter AL545_24520 PF00528 Binding-protein-dependent transport system inner membrane component AL545_24525 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL545_24535 PF08299 Bacterial dnaA protein helix-turn-helix AL545_24535 PF00308 Bacterial dnaA protein AL545_24535 PF11638 DnaA N-terminal domain AL545_24540 PF00712 DNA polymerase III beta subunit, N-terminal domain AL545_24540 PF02767 DNA polymerase III beta subunit, central domain AL545_24540 PF02768 DNA polymerase III beta subunit, C-terminal domain AL545_24545 PF02463 RecF/RecN/SMC N terminal domain