AL541_00005	PF13302	Acetyltransferase (GNAT) domain
AL541_00015	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL541_00020	PF00873	AcrB/AcrD/AcrF family
AL541_00025	PF13437	HlyD family secretion protein
AL541_00025	PF13533	Biotin-lipoyl like
AL541_00035	PF00326	Prolyl oligopeptidase family
AL541_00035	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL541_00040	PF00005	ABC transporter
AL541_00045	PF00582	Universal stress protein family
AL541_00050	PF02525	Flavodoxin-like fold
AL541_00055	PF00999	Sodium/hydrogen exchanger family
AL541_00055	PF02254	TrkA-N domain
AL541_00065	PF12840	Helix-turn-helix domain
AL541_00070	PF00128	Alpha amylase, catalytic domain
AL541_00075	PF13411	MerR HTH family regulatory protein
AL541_00080	PF02627	Carboxymuconolactone decarboxylase family
AL541_00085	PF09016	Pas factor saposin fold
AL541_00090	PF01752	Collagenase
AL541_00090	PF04151	Bacterial pre-peptidase C-terminal domain
AL541_00090	PF08453	Peptidase family M9 N-terminal
AL541_00100	PF01039	Carboxyl transferase domain
AL541_00105	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_00105	PF03466	LysR substrate binding domain
AL541_00110	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_00110	PF00672	HAMP domain
AL541_00110	PF17203	AL541_00110
AL541_00120	PF03824	AL541_00120
AL541_00125	PF02583	Metal-sensitive transcriptional repressor
AL541_00130	PF02447	AL541_00130
AL541_00135	PF01370	NAD dependent epimerase/dehydratase family
AL541_00140	PF01261	Xylose isomerase-like TIM barrel
AL541_00145	PF00596	Class II Aldolase and Adducin N-terminal domain
AL541_00150	PF07005	Protein of unknown function, DUF1537
AL541_00150	PF17042	AL541_00150
AL541_00155	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL541_00155	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL541_00160	PF00455	AL541_00160
AL541_00160	PF08220	DeoR-like helix-turn-helix domain
AL541_00165	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_00170	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_00175	PF00005	ABC transporter
AL541_00180	PF00005	ABC transporter
AL541_00185	PF01554	MatE
AL541_00190	PF13616	PPIC-type PPIASE domain
AL541_00195	PF00072	Response regulator receiver domain
AL541_00195	PF01584	CheW-like domain
AL541_00200	PF01923	Cobalamin adenosyltransferase
AL541_00205	PF01243	Pyridoxamine 5'-phosphate oxidase
AL541_00210	PF06228	Haem utilisation ChuX/HutX
AL541_00215	PF04055	Radical SAM superfamily
AL541_00220	PF03544	Gram-negative bacterial TonB protein C-terminal
AL541_00225	PF01618	AL541_00225
AL541_00230	PF02472	Biopolymer transport protein ExbD/TolR
AL541_00235	PF01497	Periplasmic binding protein
AL541_00240	PF01032	FecCD transport family
AL541_00245	PF00005	ABC transporter
AL541_00255	PF04175	Protein of unknown function (DUF406)
AL541_00260	PF07383	AL541_00260
AL541_00270	PF01553	Acyltransferase
AL541_00285	PF01467	Cytidylyltransferase
AL541_00290	PF02540	NAD synthase
AL541_00295	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL541_00295	PF00175	Oxidoreductase NAD-binding domain
AL541_00295	PF00970	Oxidoreductase FAD-binding domain
AL541_00295	PF03473	MOSC domain
AL541_00295	PF03476	MOSC N-terminal beta barrel domain
AL541_00300	PF01679	AL541_00300
AL541_00310	PF01979	Amidohydrolase family
AL541_00315	PF05661	AL541_00315
AL541_00320	PF00246	Zinc carboxypeptidase
AL541_00325	PF01032	FecCD transport family
AL541_00330	PF01032	FecCD transport family
AL541_00335	PF01497	Periplasmic binding protein
AL541_00340	PF00593	TonB dependent receptor
AL541_00340	PF07715	TonB-dependent Receptor Plug Domain
AL541_00345	PF00005	ABC transporter
AL541_00345	PF00664	ABC transporter transmembrane region
AL541_00350	PF00005	ABC transporter
AL541_00355	PF12833	Helix-turn-helix domain
AL541_00360	PF00892	EamA-like transporter family
AL541_00365	PF03061	Thioesterase superfamily
AL541_00375	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_00380	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_00380	PF14785	Maltose transport system permease protein MalF P2 domain
AL541_00385	PF13416	Bacterial extracellular solute-binding protein
AL541_00390	PF00005	ABC transporter
AL541_00390	PF08402	TOBE domain
AL541_00395	PF02397	AL541_00395
AL541_00395	PF13727	CoA-binding domain
AL541_00400	PF10082	AL541_00400
AL541_00405	PF02563	Polysaccharide biosynthesis/export protein
AL541_00405	PF10531	SLBB domain
AL541_00410	PF02706	Chain length determinant protein
AL541_00410	PF13614	AAA domain
AL541_00410	PF13807	AL541_00410
AL541_00415	PF10364	AL541_00415
AL541_00420	PF00534	Glycosyl transferases group 1
AL541_00420	PF13439	Glycosyltransferase Family 4
AL541_00425	PF04932	AL541_00425
AL541_00430	PF10364	AL541_00430
AL541_00435	PF13579	Glycosyl transferase 4-like domain
AL541_00435	PF13692	Glycosyl transferases group 1
AL541_00440	PF01943	AL541_00440
AL541_00440	PF14667	Polysaccharide biosynthesis C-terminal domain
AL541_00445	PF04892	AL541_00445
AL541_00450	PF04266	ASCH domain
AL541_00455	PF00440	Bacterial regulatory proteins, tetR family
AL541_00455	PF16925	AL541_00455
AL541_00460	PF00107	Zinc-binding dehydrogenase
AL541_00460	PF16884	AL541_00460
AL541_00465	PF00043	Glutathione S-transferase, C-terminal domain
AL541_00465	PF02798	Glutathione S-transferase, N-terminal domain
AL541_00470	PF00199	Catalase
AL541_00470	PF06628	Catalase-related immune-responsive
AL541_00475	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL541_00475	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL541_00480	PF09313	Domain of unknown function (DUF1971)
AL541_00485	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_00490	PF00258	Flavodoxin
AL541_00490	PF00301	Rubredoxin
AL541_00490	PF00753	Metallo-beta-lactamase superfamily
AL541_00495	PF00158	Sigma-54 interaction domain
AL541_00495	PF01590	GAF domain
AL541_00505	PF13419	Haloacid dehalogenase-like hydrolase
AL541_00510	PF00127	Copper binding proteins, plastocyanin/azurin family
AL541_00515	PF06249	Ethanolamine utilisation protein EutQ
AL541_00520	PF01266	FAD dependent oxidoreductase
AL541_00525	PF00301	Rubredoxin
AL541_00525	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_00530	PF00171	Aldehyde dehydrogenase family
AL541_00535	PF00355	Rieske [2Fe-2S] domain
AL541_00535	PF00848	Ring hydroxylating alpha subunit (catalytic domain)
AL541_00540	PF02028	BCCT family transporter
AL541_00545	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_00545	PF03466	LysR substrate binding domain
AL541_00550	PF02386	Cation transport protein
AL541_00555	PF02254	TrkA-N domain
AL541_00560	PF00072	Response regulator receiver domain
AL541_00560	PF00486	Transcriptional regulatory protein, C terminal
AL541_00565	PF00512	His Kinase A (phospho-acceptor) domain
AL541_00565	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_00565	PF13493	Domain of unknown function (DUF4118)
AL541_00570	PF00005	ABC transporter
AL541_00570	PF00664	ABC transporter transmembrane region
AL541_00575	PF00593	TonB dependent receptor
AL541_00575	PF07715	TonB-dependent Receptor Plug Domain
AL541_00580	PF00005	ABC transporter
AL541_00585	PF01497	Periplasmic binding protein
AL541_00590	PF01032	FecCD transport family
AL541_00595	PF00924	Mechanosensitive ion channel
AL541_00600	PF13437	HlyD family secretion protein
AL541_00600	PF13533	Biotin-lipoyl like
AL541_00605	PF00005	ABC transporter
AL541_00610	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
AL541_00615	PF00196	Bacterial regulatory proteins, luxR family
AL541_00620	PF00196	Bacterial regulatory proteins, luxR family
AL541_00630	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_00630	PF00672	HAMP domain
AL541_00635	PF07726	ATPase family associated with various cellular activities (AAA)
AL541_00640	PF01882	AL541_00640
AL541_00645	PF14316	AL541_00645
AL541_00650	PF00092	von Willebrand factor type A domain
AL541_00655	PF13519	von Willebrand factor type A domain
AL541_00660	PF13584	AL541_00660
AL541_00665	PF00990	GGDEF domain
AL541_00670	PF00005	ABC transporter
AL541_00675	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_00680	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_00685	PF12849	PBP superfamily domain
AL541_00690	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_00690	PF00672	HAMP domain
AL541_00695	PF07603	AL541_00695
AL541_00700	PF07603	AL541_00700
AL541_00705	PF01483	Proprotein convertase P-domain
AL541_00710	PF00593	TonB dependent receptor
AL541_00710	PF07715	TonB-dependent Receptor Plug Domain
AL541_00715	PF00326	Prolyl oligopeptidase family
AL541_00715	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL541_00720	PF00270	DEAD/DEAH box helicase
AL541_00720	PF00271	Helicase conserved C-terminal domain
AL541_00725	PF04728	Lipoprotein leucine-zipper
AL541_00730	PF01476	LysM domain
AL541_00730	PF03734	L,D-transpeptidase catalytic domain
AL541_00735	PF00875	DNA photolyase
AL541_00735	PF03441	FAD binding domain of DNA photolyase
AL541_00740	PF13411	MerR HTH family regulatory protein
AL541_00745	PF04463	AL541_00745
AL541_00745	PF08349	AL541_00745
AL541_00750	PF01048	Phosphorylase superfamily
AL541_00765	PF00990	GGDEF domain
AL541_00770	PF11742	AL541_00770
AL541_00775	PF13533	Biotin-lipoyl like
AL541_00780	PF07155	ECF-type riboflavin transporter, S component
AL541_00785	PF00005	ABC transporter
AL541_00785	PF12558	AL541_00785
AL541_00790	PF02361	Cobalt transport protein
AL541_00795	PF14145	AL541_00795
AL541_00800	PF07690	Major Facilitator Superfamily
AL541_00805	PF12801	AL541_00805
AL541_00805	PF13187	4Fe-4S dicluster domain
AL541_00810	PF12800	4Fe-4S binding domain
AL541_00810	PF12838	4Fe-4S dicluster domain
AL541_00815	PF00583	Acetyltransferase (GNAT) family
AL541_00820	PF02958	Ecdysteroid kinase
AL541_00825	PF14542	GCN5-related N-acetyl-transferase
AL541_00830	PF07238	PilZ domain
AL541_00830	PF12945	Flagellar protein YcgR
AL541_00835	PF13609	Gram-negative porin
AL541_00840	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_00840	PF00672	HAMP domain
AL541_00845	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL541_00845	PF13654	AAA domain
AL541_00855	PF00005	ABC transporter
AL541_00855	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_00860	PF00326	Prolyl oligopeptidase family
AL541_00860	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL541_00865	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_00865	PF03466	LysR substrate binding domain
AL541_00870	PF02652	AL541_00870
AL541_00875	PF01070	FMN-dependent dehydrogenase
AL541_00885	PF00924	Mechanosensitive ion channel
AL541_00890	PF00194	Eukaryotic-type carbonic anhydrase
AL541_00895	PF05229	AL541_00895
AL541_00900	PF00577	Outer membrane usher protein
AL541_00905	PF00345	Pili and flagellar-assembly chaperone, PapD N-terminal domain
AL541_00910	PF05229	AL541_00910
AL541_00915	PF05229	AL541_00915
AL541_00920	PF00107	Zinc-binding dehydrogenase
AL541_00920	PF08240	Alcohol dehydrogenase GroES-like domain
AL541_00925	PF00155	Aminotransferase class I and II
AL541_00930	PF00563	EAL domain
AL541_00930	PF00990	GGDEF domain
AL541_00935	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_00940	PF00266	Aminotransferase class-V
AL541_00945	PF00080	Copper/zinc superoxide dismutase (SODC)
AL541_00950	PF00512	His Kinase A (phospho-acceptor) domain
AL541_00955	PF00072	Response regulator receiver domain
AL541_00955	PF00486	Transcriptional regulatory protein, C terminal
AL541_00960	PF06468	Spondin_N
AL541_00965	PF06468	Spondin_N
AL541_00975	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_00975	PF03466	LysR substrate binding domain
AL541_00980	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_00985	PF03929	AL541_00985
AL541_00995	PF07361	Cytochrome b562
AL541_01005	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
AL541_01010	PF00892	EamA-like transporter family
AL541_01015	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_01015	PF03466	LysR substrate binding domain
AL541_01020	PF00089	Trypsin
AL541_01025	PF02050	Flagellar FliJ protein
AL541_01030	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL541_01035	PF02108	AL541_01035
AL541_01040	PF01706	FliG C-terminal domain
AL541_01040	PF14841	FliG middle domain
AL541_01040	PF14842	FliG N-terminal domain
AL541_01045	PF01514	Secretory protein of YscJ/FliF family
AL541_01045	PF08345	AL541_01045
AL541_01050	PF02049	AL541_01050
AL541_01055	PF00158	Sigma-54 interaction domain
AL541_01055	PF02954	Bacterial regulatory protein, Fis family
AL541_01060	PF00691	OmpA family
AL541_01065	PF01052	Surface presentation of antigens (SPOA)
AL541_01070	PF01052	Surface presentation of antigens (SPOA)
AL541_01075	PF00813	AL541_01075
AL541_01080	PF01313	AL541_01080
AL541_01085	PF01311	AL541_01085
AL541_01090	PF01312	FlhB HrpN YscU SpaS Family
AL541_01095	PF00771	FHIPEP family
AL541_01100	PF00563	EAL domain
AL541_01105	PF00669	Bacterial flagellin N-terminal helical region
AL541_01105	PF00700	Bacterial flagellin C-terminal helical region
AL541_01115	PF02465	AL541_01115
AL541_01115	PF07195	AL541_01115
AL541_01115	PF07196	Flagellin hook IN motif
AL541_01120	PF02561	Flagellar protein FliS
AL541_01130	PF02120	Flagellar hook-length control protein FliK
AL541_01135	PF03748	AL541_01135
AL541_01140	PF04542	Sigma-70 region 2
AL541_01140	PF04545	Sigma-70, region 4
AL541_01145	PF01618	AL541_01145
AL541_01150	PF00691	OmpA family
AL541_01150	PF13677	AL541_01150
AL541_01165	PF08000	Bacterial PH domain
AL541_01170	PF09493	AL541_01170
AL541_01175	PF04982	AL541_01175
AL541_01180	PF00440	Bacterial regulatory proteins, tetR family
AL541_01185	PF01228	Glycine radical
AL541_01185	PF02901	Pyruvate formate lyase
AL541_01190	PF04055	Radical SAM superfamily
AL541_01190	PF13353	4Fe-4S single cluster domain
AL541_01195	PF00923	Transaldolase
AL541_01205	PF10990	AL541_01205
AL541_01210	PF06123	AL541_01210
AL541_01215	PF00512	His Kinase A (phospho-acceptor) domain
AL541_01215	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_01220	PF00072	Response regulator receiver domain
AL541_01220	PF00486	Transcriptional regulatory protein, C terminal
AL541_01225	PF10973	AL541_01225
AL541_01235	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)
AL541_01240	PF00583	Acetyltransferase (GNAT) family
AL541_01245	PF07690	Major Facilitator Superfamily
AL541_01250	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_01250	PF03466	LysR substrate binding domain
AL541_01255	PF00892	EamA-like transporter family
AL541_01265	PF04632	AL541_01265
AL541_01270	PF02321	Outer membrane efflux protein
AL541_01275	PF07869	AL541_01275
AL541_01280	PF16576	AL541_01280
AL541_01285	PF07885	Ion channel
AL541_01290	PF01594	AL541_01290
AL541_01295	PF09829	AL541_01295
AL541_01300	PF06271	AL541_01300
AL541_01305	PF00175	Oxidoreductase NAD-binding domain
AL541_01305	PF00970	Oxidoreductase FAD-binding domain
AL541_01310	PF13279	Thioesterase-like superfamily
AL541_01315	PF09905	Uncharacterized conserved protein (DUF2132)
AL541_01320	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_01320	PF03466	LysR substrate binding domain
AL541_01325	PF03992	Antibiotic biosynthesis monooxygenase
AL541_01330	PF00881	Nitroreductase family
AL541_01335	PF12833	Helix-turn-helix domain
AL541_01340	PF00128	Alpha amylase, catalytic domain
AL541_01340	PF09985	Domain of unknown function (DUF2223)
AL541_01345	PF00768	D-alanyl-D-alanine carboxypeptidase
AL541_01345	PF07943	Penicillin-binding protein 5, C-terminal domain
AL541_01350	PF00561	alpha/beta hydrolase fold
AL541_01355	PF00581	Rhodanese-like domain
AL541_01365	PF00875	DNA photolyase
AL541_01365	PF03441	FAD binding domain of DNA photolyase
AL541_01370	PF02469	Fasciclin domain
AL541_01375	PF03067	Chitin binding domain
AL541_01380	PF01734	Patatin-like phospholipase
AL541_01385	PF01914	AL541_01385
AL541_01390	PF00881	Nitroreductase family
AL541_01395	PF02563	Polysaccharide biosynthesis/export protein
AL541_01395	PF10531	SLBB domain
AL541_01400	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL541_01405	PF02706	Chain length determinant protein
AL541_01405	PF13614	AAA domain
AL541_01405	PF13807	AL541_01405
AL541_01415	PF08803	Putative mono-oxygenase ydhR
AL541_01420	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_01420	PF03466	LysR substrate binding domain
AL541_01425	PF08874	AL541_01425
AL541_01430	PF00375	Sodium:dicarboxylate symporter family
AL541_01445	PF06803	AL541_01445
AL541_01450	PF01546	Peptidase family M20/M25/M40
AL541_01450	PF07687	Peptidase dimerisation domain
AL541_01455	PF07670	Nucleoside recognition
AL541_01460	PF07670	Nucleoside recognition
AL541_01470	PF13462	Thioredoxin
AL541_01475	PF00128	Alpha amylase, catalytic domain
AL541_01480	PF00912	Transglycosylase
AL541_01485	PF00128	Alpha amylase, catalytic domain
AL541_01485	PF02806	Alpha amylase, C-terminal all-beta domain
AL541_01485	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL541_01490	PF02446	4-alpha-glucanotransferase
AL541_01495	PF00343	Carbohydrate phosphorylase
AL541_01500	PF00196	Bacterial regulatory proteins, luxR family
AL541_01505	PF04018	AL541_01505
AL541_01515	PF02630	SCO1/SenC
AL541_01520	PF00367	phosphotransferase system, EIIB
AL541_01525	PF03193	Protein of unknown function, DUF258
AL541_01530	PF00375	Sodium:dicarboxylate symporter family
AL541_01535	PF08543	Phosphomethylpyrimidine kinase
AL541_01540	PF04014	Antidote-toxin recognition MazE
AL541_01545	PF08238	Sel1 repeat
AL541_01550	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL541_01550	PF03714	Bacterial pullanase-associated domain
AL541_01550	PF11852	Domain of unknown function (DUF3372)
AL541_01555	PF02018	Carbohydrate binding domain
AL541_01555	PF04231	Endonuclease I
AL541_01560	PF00128	Alpha amylase, catalytic domain
AL541_01570	PF07148	AL541_01570
AL541_01575	PF02264	LamB porin
AL541_01580	PF00128	Alpha amylase, catalytic domain
AL541_01580	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL541_01585	PF03313	AL541_01585
AL541_01585	PF03315	Serine dehydratase beta chain
AL541_01590	PF00474	Sodium:solute symporter family
AL541_01595	PF07690	Major Facilitator Superfamily
AL541_01600	PF12680	SnoaL-like domain
AL541_01610	PF12146	Putative lysophospholipase
AL541_01620	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_01625	PF00815	Histidinol dehydrogenase
AL541_01630	PF03328	HpcH/HpaI aldolase/citrate lyase family
AL541_01635	PF00356	Bacterial regulatory proteins, lacI family
AL541_01635	PF13377	Periplasmic binding protein-like domain
AL541_01640	PF03480	Bacterial extracellular solute-binding protein, family 7
AL541_01645	PF04290	AL541_01645
AL541_01650	PF06808	AL541_01650
AL541_01655	PF07366	SnoaL-like polyketide cyclase
AL541_01660	PF07366	SnoaL-like polyketide cyclase
AL541_01665	PF00474	Sodium:solute symporter family
AL541_01670	PF00356	Bacterial regulatory proteins, lacI family
AL541_01670	PF13377	Periplasmic binding protein-like domain
AL541_01675	PF00239	Resolvase, N terminal domain
AL541_01675	PF02796	Helix-turn-helix domain of resolvase
AL541_01680	PF07690	Major Facilitator Superfamily
AL541_01685	PF01852	START domain
AL541_01695	PF01551	Peptidase family M23
AL541_01700	PF04519	AL541_01700
AL541_01705	PF00675	Insulinase (Peptidase family M16)
AL541_01705	PF05193	Peptidase M16 inactive domain
AL541_01710	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_01710	PF00672	HAMP domain
AL541_01710	PF02743	Cache domain
AL541_01715	PF00005	ABC transporter
AL541_01720	PF01032	FecCD transport family
AL541_01725	PF01032	FecCD transport family
AL541_01730	PF01497	Periplasmic binding protein
AL541_01735	PF00593	TonB dependent receptor
AL541_01735	PF07715	TonB-dependent Receptor Plug Domain
AL541_01740	PF00593	TonB dependent receptor
AL541_01740	PF07715	TonB-dependent Receptor Plug Domain
AL541_01750	PF04183	IucA / IucC family
AL541_01750	PF06276	Ferric iron reductase FhuF-like transporter
AL541_01755	PF07690	Major Facilitator Superfamily
AL541_01760	PF04183	IucA / IucC family
AL541_01760	PF06276	Ferric iron reductase FhuF-like transporter
AL541_01765	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL541_01765	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL541_01770	PF13416	Bacterial extracellular solute-binding protein
AL541_01775	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_01780	PF00072	Response regulator receiver domain
AL541_01780	PF00486	Transcriptional regulatory protein, C terminal
AL541_01790	PF00367	phosphotransferase system, EIIB
AL541_01790	PF02378	Phosphotransferase system, EIIC
AL541_01795	PF03625	Domain of unknown function DUF302
AL541_01800	PF01136	AL541_01800
AL541_01805	PF11730	AL541_01805
AL541_01810	PF00005	ABC transporter
AL541_01815	PF02687	AL541_01815
AL541_01820	PF07143	Hydroxyneurosporene synthase (CrtC)
AL541_01820	PF17186	AL541_01820
AL541_01825	PF11212	AL541_01825
AL541_01830	PF13302	Acetyltransferase (GNAT) domain
AL541_01835	PF12833	Helix-turn-helix domain
AL541_01840	PF06445	GyrI-like small molecule binding domain
AL541_01840	PF12833	Helix-turn-helix domain
AL541_01845	PF02698	DUF218 domain
AL541_01850	PF05016	Plasmid stabilisation system protein
AL541_01860	PF02566	OsmC-like protein
AL541_01865	PF01047	MarR family
AL541_01870	PF00578	AhpC/TSA family
AL541_01870	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AL541_01875	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_01875	PF13192	Thioredoxin domain
AL541_01890	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
AL541_01895	PF13669	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_01900	PF00188	Cysteine-rich secretory protein family
AL541_01905	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_01905	PF03466	LysR substrate binding domain
AL541_01915	PF01965	DJ-1/PfpI family
AL541_01920	PF04542	Sigma-70 region 2
AL541_01920	PF08281	Sigma-70, region 4
AL541_01930	PF08240	Alcohol dehydrogenase GroES-like domain
AL541_01935	PF12833	Helix-turn-helix domain
AL541_01940	PF03473	MOSC domain
AL541_01940	PF03475	3-alpha domain
AL541_01945	PF00270	DEAD/DEAH box helicase
AL541_01945	PF00271	Helicase conserved C-terminal domain
AL541_01950	PF02274	Amidinotransferase
AL541_01955	PF00005	ABC transporter
AL541_01955	PF00664	ABC transporter transmembrane region
AL541_01965	PF01037	AsnC family
AL541_01965	PF13412	Winged helix-turn-helix DNA-binding
AL541_01985	PF00076	RNA recognition motif
AL541_01990	PF13302	Acetyltransferase (GNAT) domain
AL541_01995	PF00474	Sodium:solute symporter family
AL541_02005	PF00171	Aldehyde dehydrogenase family
AL541_02005	PF01619	Proline dehydrogenase
AL541_02005	PF14850	DNA-binding domain of Proline dehydrogenase
AL541_02010	PF12833	Helix-turn-helix domain
AL541_02015	PF00196	Bacterial regulatory proteins, luxR family
AL541_02015	PF08448	PAS fold
AL541_02020	PF01243	Pyridoxamine 5'-phosphate oxidase
AL541_02020	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
AL541_02025	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_02025	PF02743	Cache domain
AL541_02030	PF00072	Response regulator receiver domain
AL541_02030	PF02954	Bacterial regulatory protein, Fis family
AL541_02035	PF13437	HlyD family secretion protein
AL541_02035	PF13533	Biotin-lipoyl like
AL541_02040	PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP
AL541_02045	PF00563	EAL domain
AL541_02045	PF00990	GGDEF domain
AL541_02045	PF16448	AL541_02045
AL541_02050	PF00005	ABC transporter
AL541_02050	PF00664	ABC transporter transmembrane region
AL541_02055	PF00924	Mechanosensitive ion channel
AL541_02060	PF03358	NADPH-dependent FMN reductase
AL541_02065	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_02070	PF00246	Zinc carboxypeptidase
AL541_02075	PF01380	SIS domain
AL541_02075	PF01418	Helix-turn-helix domain, rpiR family
AL541_02085	PF01380	SIS domain
AL541_02090	PF00367	phosphotransferase system, EIIB
AL541_02090	PF02378	Phosphotransferase system, EIIC
AL541_02100	PF03575	Peptidase family S51
AL541_02105	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_02105	PF03466	LysR substrate binding domain
AL541_02110	PF00132	Bacterial transferase hexapeptide (six repeats)
AL541_02115	PF03961	AL541_02115
AL541_02120	PF05127	Helicase
AL541_02120	PF13718	GNAT acetyltransferase 2
AL541_02125	PF02195	ParB-like nuclease domain
AL541_02130	PF13614	AAA domain
AL541_02135	PF11826	AL541_02135
AL541_02145	PF00005	ABC transporter
AL541_02145	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_02150	PF00005	ABC transporter
AL541_02160	PF00925	GTP cyclohydrolase II
AL541_02160	PF08719	Domain of unknown function (DUF1768)
AL541_02165	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_02170	PF00072	Response regulator receiver domain
AL541_02170	PF00512	His Kinase A (phospho-acceptor) domain
AL541_02170	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_02170	PF17149	AL541_02170
AL541_02175	PF11686	AL541_02175
AL541_02180	PF01709	Transcriptional regulator
AL541_02185	PF01098	AL541_02185
AL541_02195	PF00005	ABC transporter
AL541_02200	PF02687	AL541_02200
AL541_02200	PF12704	MacB-like periplasmic core domain
AL541_02205	PF17131	AL541_02205
AL541_02215	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_02215	PF06580	AL541_02215
AL541_02220	PF00072	Response regulator receiver domain
AL541_02220	PF04397	LytTr DNA-binding domain
AL541_02225	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL541_02230	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_02230	PF17200	AL541_02230
AL541_02235	PF04134	AL541_02235
AL541_02240	PF14247	AL541_02240
AL541_02250	PF03616	AL541_02250
AL541_02260	PF00005	ABC transporter
AL541_02265	PF00392	Bacterial regulatory proteins, gntR family
AL541_02270	PF03616	AL541_02270
AL541_02280	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL541_02285	PF11280	AL541_02285
AL541_02290	PF04219	AL541_02290
AL541_02295	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_02295	PF03466	LysR substrate binding domain
AL541_02300	PF02678	Pirin
AL541_02305	PF07681	AL541_02305
AL541_02315	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL541_02315	PF02805	Metal binding domain of Ada
AL541_02315	PF06029	AlkA N-terminal domain
AL541_02315	PF12833	Helix-turn-helix domain
AL541_02320	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL541_02320	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AL541_02330	PF02588	AL541_02330
AL541_02335	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL541_02340	PF03600	Citrate transporter
AL541_02345	PF01757	AL541_02345
AL541_02350	PF00440	Bacterial regulatory proteins, tetR family
AL541_02355	PF12146	Putative lysophospholipase
AL541_02360	PF00704	Glycosyl hydrolases family 18
AL541_02360	PF02839	Carbohydrate binding domain
AL541_02360	PF08329	Chitinase A, N-terminal domain
AL541_02365	PF11012	AL541_02365
AL541_02370	PF06865	Protein of unknown function (DUF1255)
AL541_02380	PF00990	GGDEF domain
AL541_02385	PF01554	MatE
AL541_02390	PF00849	RNA pseudouridylate synthase
AL541_02395	PF01323	DSBA-like thioredoxin domain
AL541_02400	PF00753	Metallo-beta-lactamase superfamily
AL541_02405	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_02405	PF03466	LysR substrate binding domain
AL541_02410	PF08282	haloacid dehalogenase-like hydrolase
AL541_02420	PF00990	GGDEF domain
AL541_02430	PF00756	Putative esterase
AL541_02435	PF00107	Zinc-binding dehydrogenase
AL541_02435	PF08240	Alcohol dehydrogenase GroES-like domain
AL541_02440	PF00797	N-acetyltransferase
AL541_02445	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_02445	PF03466	LysR substrate binding domain
AL541_02450	PF04954	Siderophore-interacting protein
AL541_02450	PF08021	Siderophore-interacting FAD-binding domain
AL541_02455	PF01810	AL541_02455
AL541_02460	PF01037	AsnC family
AL541_02460	PF13412	Winged helix-turn-helix DNA-binding
AL541_02465	PF03067	Chitin binding domain
AL541_02470	PF12710	haloacid dehalogenase-like hydrolase
AL541_02475	PF07883	Cupin domain
AL541_02480	PF00805	Pentapeptide repeats (8 copies)
AL541_02480	PF13599	Pentapeptide repeats (9 copies)
AL541_02485	PF03922	OmpW family
AL541_02490	PF16576	AL541_02490
AL541_02495	PF07690	Major Facilitator Superfamily
AL541_02500	PF07073	Modulator of Rho-dependent transcription termination (ROF)
AL541_02505	PF12706	Beta-lactamase superfamily domain
AL541_02510	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_02515	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_02520	PF13642	protein structure with unknown function
AL541_02525	PF06041	Bacterial protein of unknown function (DUF924)
AL541_02530	PF01432	Peptidase family M3
AL541_02545	PF05651	AL541_02545
AL541_02545	PF13556	PucR C-terminal helix-turn-helix domain
AL541_02550	PF02447	AL541_02550
AL541_02555	PF02595	Glycerate kinase family
AL541_02560	PF00155	Aminotransferase class I and II
AL541_02560	PF00392	Bacterial regulatory proteins, gntR family
AL541_02565	PF00892	EamA-like transporter family
AL541_02580	PF00583	Acetyltransferase (GNAT) family
AL541_02585	PF13419	Haloacid dehalogenase-like hydrolase
AL541_02590	PF00583	Acetyltransferase (GNAT) family
AL541_02595	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_02600	PF13302	Acetyltransferase (GNAT) domain
AL541_02605	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL541_02610	PF00384	Molybdopterin oxidoreductase
AL541_02610	PF01568	Molydopterin dinucleotide binding domain
AL541_02615	PF01569	PAP2 superfamily
AL541_02620	PF02581	Thiamine monophosphate synthase/TENI
AL541_02625	PF02110	Hydroxyethylthiazole kinase family
AL541_02630	PF03070	TENA/THI-4/PQQC family
AL541_02635	PF09084	NMT1/THI5 like
AL541_02640	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_02645	PF00005	ABC transporter
AL541_02650	PF08543	Phosphomethylpyrimidine kinase
AL541_02655	PF01523	Putative modulator of DNA gyrase
AL541_02660	PF01523	Putative modulator of DNA gyrase
AL541_02665	PF04013	Putative SAM-dependent RNA methyltransferase
AL541_02670	PF11286	AL541_02670
AL541_02720	PF10928	Protein of unknown function (DUF2810)
AL541_02725	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL541_02725	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL541_02730	PF03734	L,D-transpeptidase catalytic domain
AL541_02735	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL541_02740	PF00072	Response regulator receiver domain
AL541_02740	PF00486	Transcriptional regulatory protein, C terminal
AL541_02745	PF00512	His Kinase A (phospho-acceptor) domain
AL541_02745	PF00672	HAMP domain
AL541_02745	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_02745	PF16750	AL541_02745
AL541_02750	PF00593	TonB dependent receptor
AL541_02750	PF07715	TonB-dependent Receptor Plug Domain
AL541_02755	PF11932	AL541_02755
AL541_02760	PF01618	AL541_02760
AL541_02765	PF01618	AL541_02765
AL541_02770	PF02472	Biopolymer transport protein ExbD/TolR
AL541_02775	PF03544	Gram-negative bacterial TonB protein C-terminal
AL541_02795	PF16357	AL541_02795
AL541_02800	PF10029	AL541_02800
AL541_02805	PF10670	AL541_02805
AL541_02820	PF01297	Periplasmic solute binding protein family
AL541_02825	PF00005	ABC transporter
AL541_02830	PF00950	AL541_02830
AL541_02840	PF13609	Gram-negative porin
AL541_02845	PF00326	Prolyl oligopeptidase family
AL541_02845	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL541_02850	PF07690	Major Facilitator Superfamily
AL541_02855	PF00491	Arginase family
AL541_02860	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL541_02865	PF00753	Metallo-beta-lactamase superfamily
AL541_02870	PF05618	Putative ATP-dependant zinc protease
AL541_02875	PF08443	RimK-like ATP-grasp domain
AL541_02885	PF00440	Bacterial regulatory proteins, tetR family
AL541_02885	PF14246	AefR-like transcriptional repressor, C-terminal region
AL541_02890	PF12706	Beta-lactamase superfamily domain
AL541_02895	PF17263	AL541_02895
AL541_02900	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_02900	PF03466	LysR substrate binding domain
AL541_02905	PF04320	AL541_02905
AL541_02910	PF05787	Bacterial protein of unknown function (DUF839)
AL541_02915	PF00232	Glycosyl hydrolase family 1
AL541_02920	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_02920	PF13426	PAS domain
AL541_02925	PF00072	Response regulator receiver domain
AL541_02925	PF00158	Sigma-54 interaction domain
AL541_02925	PF02954	Bacterial regulatory protein, Fis family
AL541_02930	PF00990	GGDEF domain
AL541_02935	PF05525	AL541_02935
AL541_02945	PF16868	AL541_02945
AL541_02950	PF06808	AL541_02950
AL541_02955	PF01266	FAD dependent oxidoreductase
AL541_02975	PF10617	AL541_02975
AL541_02980	PF02322	AL541_02980
AL541_02985	PF01654	AL541_02985
AL541_02990	PF03116	AL541_02990
AL541_02995	PF01212	Beta-eliminating lyase
AL541_03000	PF11140	AL541_03000
AL541_03015	PF01773	Na+ dependent nucleoside transporter N-terminus
AL541_03015	PF07662	Na+ dependent nucleoside transporter C-terminus
AL541_03015	PF07670	Nucleoside recognition
AL541_03020	PF12060	AL541_03020
AL541_03025	PF13532	2OG-Fe(II) oxygenase superfamily
AL541_03030	PF00990	GGDEF domain
AL541_03030	PF03924	CHASE domain
AL541_03035	PF01381	Helix-turn-helix
AL541_03035	PF06114	Domain of unknown function (DUF955)
AL541_03035	PF12268	AL541_03035
AL541_03045	PF00990	GGDEF domain
AL541_03050	PF00875	DNA photolyase
AL541_03050	PF03441	FAD binding domain of DNA photolyase
AL541_03055	PF04244	Deoxyribodipyrimidine photo-lyase-related protein
AL541_03060	PF00106	short chain dehydrogenase
AL541_03065	PF10013	AL541_03065
AL541_03070	PF01625	Peptide methionine sulfoxide reductase
AL541_03070	PF01641	SelR domain
AL541_03075	PF02566	OsmC-like protein
AL541_03080	PF12464	Maltose acetyltransferase
AL541_03080	PF14602	Hexapeptide repeat of succinyl-transferase
AL541_03105	PF08279	HTH domain
AL541_03105	PF13280	AL541_03105
AL541_03115	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03115	PF03466	LysR substrate binding domain
AL541_03120	PF13419	Haloacid dehalogenase-like hydrolase
AL541_03125	PF00293	NUDIX domain
AL541_03135	PF09695	AL541_03135
AL541_03140	PF00194	Eukaryotic-type carbonic anhydrase
AL541_03145	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL541_03155	PF16576	AL541_03155
AL541_03160	PF00005	ABC transporter
AL541_03160	PF02687	AL541_03160
AL541_03160	PF12704	MacB-like periplasmic core domain
AL541_03165	PF02321	Outer membrane efflux protein
AL541_03175	PF00440	Bacterial regulatory proteins, tetR family
AL541_03180	PF00657	GDSL-like Lipase/Acylhydrolase
AL541_03185	PF00082	Subtilase family
AL541_03185	PF01483	Proprotein convertase P-domain
AL541_03185	PF02225	PA domain
AL541_03185	PF05922	Peptidase inhibitor I9
AL541_03195	PF03611	AL541_03195
AL541_03200	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL541_03205	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL541_03210	PF00356	Bacterial regulatory proteins, lacI family
AL541_03210	PF13377	Periplasmic binding protein-like domain
AL541_03215	PF13419	Haloacid dehalogenase-like hydrolase
AL541_03220	PF00202	Aminotransferase class-III
AL541_03225	PF00266	Aminotransferase class-V
AL541_03230	PF13343	Bacterial extracellular solute-binding protein
AL541_03235	PF00005	ABC transporter
AL541_03235	PF08402	TOBE domain
AL541_03240	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_03245	PF00392	Bacterial regulatory proteins, gntR family
AL541_03245	PF07702	UTRA domain
AL541_03250	PF00892	EamA-like transporter family
AL541_03255	PF13505	Outer membrane protein beta-barrel domain
AL541_03260	PF04393	AL541_03260
AL541_03265	PF11777	AL541_03265
AL541_03270	PF01266	FAD dependent oxidoreductase
AL541_03275	PF00246	Zinc carboxypeptidase
AL541_03280	PF00691	OmpA family
AL541_03280	PF01389	OmpA-like transmembrane domain
AL541_03285	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03285	PF03466	LysR substrate binding domain
AL541_03290	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03290	PF03466	LysR substrate binding domain
AL541_03300	PF03313	AL541_03300
AL541_03300	PF03315	Serine dehydratase beta chain
AL541_03305	PF02698	DUF218 domain
AL541_03315	PF03891	AL541_03315
AL541_03320	PF00293	NUDIX domain
AL541_03325	PF01464	Transglycosylase SLT domain
AL541_03330	PF05130	FlgN protein
AL541_03335	PF04316	Anti-sigma-28 factor, FlgM
AL541_03340	PF13144	SAF-like
AL541_03345	PF00460	Flagella basal body rod protein
AL541_03350	PF00460	Flagella basal body rod protein
AL541_03350	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_03355	PF03963	AL541_03355
AL541_03355	PF13860	FlgD Ig-like domain
AL541_03355	PF13861	FlgD Tudor-like domain
AL541_03360	PF00460	Flagella basal body rod protein
AL541_03360	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_03360	PF07559	Flagellar basal body protein FlaE
AL541_03365	PF00460	Flagella basal body rod protein
AL541_03365	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_03370	PF00460	Flagella basal body rod protein
AL541_03370	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_03375	PF02107	AL541_03375
AL541_03380	PF02119	AL541_03380
AL541_03385	PF10135	AL541_03385
AL541_03390	PF00460	Flagella basal body rod protein
AL541_03390	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_03395	PF00669	Bacterial flagellin N-terminal helical region
AL541_03405	PF10101	AL541_03405
AL541_03410	PF00999	Sodium/hydrogen exchanger family
AL541_03410	PF02254	TrkA-N domain
AL541_03415	PF01070	FMN-dependent dehydrogenase
AL541_03420	PF11216	AL541_03420
AL541_03425	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL541_03430	PF00581	Rhodanese-like domain
AL541_03435	PF00166	Chaperonin 10 Kd subunit
AL541_03440	PF00118	TCP-1/cpn60 chaperonin family
AL541_03450	PF01810	AL541_03450
AL541_03460	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_03470	PF00440	Bacterial regulatory proteins, tetR family
AL541_03475	PF12833	Helix-turn-helix domain
AL541_03480	PF06751	Ethanolamine ammonia lyase large subunit (EutB)
AL541_03485	PF05985	Ethanolamine ammonia-lyase light chain (EutC)
AL541_03490	PF13520	Amino acid permease
AL541_03495	PF03060	Nitronate monooxygenase
AL541_03500	PF01625	Peptide methionine sulfoxide reductase
AL541_03505	PF00455	AL541_03505
AL541_03505	PF08220	DeoR-like helix-turn-helix domain
AL541_03510	PF00892	EamA-like transporter family
AL541_03515	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_03520	PF00857	Isochorismatase family
AL541_03525	PF00293	NUDIX domain
AL541_03530	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
AL541_03540	PF05433	AL541_03540
AL541_03545	PF13489	Methyltransferase domain
AL541_03550	PF00892	EamA-like transporter family
AL541_03555	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03555	PF03466	LysR substrate binding domain
AL541_03560	PF01389	OmpA-like transmembrane domain
AL541_03565	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_03565	PF12793	AL541_03565
AL541_03570	PF06629	AL541_03570
AL541_03575	PF04170	NlpE N-terminal domain
AL541_03580	PF00005	ABC transporter
AL541_03585	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_03595	PF02001	AL541_03595
AL541_03600	PF02579	Dinitrogenase iron-molybdenum cofactor
AL541_03605	PF04400	AL541_03605
AL541_03610	PF01636	Phosphotransferase enzyme family
AL541_03620	PF00009	Elongation factor Tu GTP binding domain
AL541_03620	PF00679	Elongation factor G C-terminus
AL541_03620	PF03764	Elongation factor G, domain IV
AL541_03620	PF14492	Elongation Factor G, domain II
AL541_03630	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
AL541_03630	PF13378	Enolase C-terminal domain-like
AL541_03635	PF07755	Protein of unknown function (DUF1611)
AL541_03635	PF17396	AL541_03635
AL541_03640	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03640	PF03466	LysR substrate binding domain
AL541_03650	PF07690	Major Facilitator Superfamily
AL541_03655	PF00376	MerR family regulatory protein
AL541_03655	PF09278	MerR, DNA binding
AL541_03660	PF09622	AL541_03660
AL541_03665	PF13181	Tetratricopeptide repeat
AL541_03670	PF04266	ASCH domain
AL541_03675	PF13649	Methyltransferase domain
AL541_03680	PF13091	PLD-like domain
AL541_03685	PF13437	HlyD family secretion protein
AL541_03685	PF13533	Biotin-lipoyl like
AL541_03690	PF00873	AcrB/AcrD/AcrF family
AL541_03710	PF00873	AcrB/AcrD/AcrF family
AL541_03720	PF00440	Bacterial regulatory proteins, tetR family
AL541_03725	PF12710	haloacid dehalogenase-like hydrolase
AL541_03730	PF00005	ABC transporter
AL541_03730	PF08402	TOBE domain
AL541_03735	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_03740	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_03745	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
AL541_03750	PF13343	Bacterial extracellular solute-binding protein
AL541_03755	PF00392	Bacterial regulatory proteins, gntR family
AL541_03755	PF07702	UTRA domain
AL541_03760	PF02028	BCCT family transporter
AL541_03780	PF13416	Bacterial extracellular solute-binding protein
AL541_03785	PF00579	tRNA synthetases class I (W and Y)
AL541_03790	PF00196	Bacterial regulatory proteins, luxR family
AL541_03800	PF00391	PEP-utilising enzyme, mobile domain
AL541_03800	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AL541_03800	PF02896	PEP-utilising enzyme, TIM barrel domain
AL541_03805	PF03618	AL541_03805
AL541_03810	PF00710	Asparaginase
AL541_03815	PF00709	Adenylosuccinate synthetase
AL541_03820	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03820	PF03466	LysR substrate binding domain
AL541_03825	PF12614	AL541_03825
AL541_03830	PF01810	AL541_03830
AL541_03835	PF09831	AL541_03835
AL541_03840	PF00202	Aminotransferase class-III
AL541_03845	PF00171	Aldehyde dehydrogenase family
AL541_03850	PF01037	AsnC family
AL541_03850	PF13412	Winged helix-turn-helix DNA-binding
AL541_03855	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL541_03860	PF00557	Metallopeptidase family M24
AL541_03860	PF01321	Creatinase/Prolidase N-terminal domain
AL541_03865	PF00155	Aminotransferase class I and II
AL541_03865	PF00392	Bacterial regulatory proteins, gntR family
AL541_03870	PF12625	AL541_03870
AL541_03870	PF12833	Helix-turn-helix domain
AL541_03875	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_03880	PF12973	ChrR Cupin-like domain
AL541_03885	PF00107	Zinc-binding dehydrogenase
AL541_03885	PF08240	Alcohol dehydrogenase GroES-like domain
AL541_03890	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL541_03895	PF04399	Glutaredoxin 2, C terminal domain
AL541_03895	PF13417	Glutathione S-transferase, N-terminal domain
AL541_03900	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03900	PF03466	LysR substrate binding domain
AL541_03905	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03905	PF03466	LysR substrate binding domain
AL541_03910	PF17389	AL541_03910
AL541_03915	PF00270	DEAD/DEAH box helicase
AL541_03915	PF00271	Helicase conserved C-terminal domain
AL541_03930	PF13698	AL541_03930
AL541_03945	PF00155	Aminotransferase class I and II
AL541_03950	PF06445	GyrI-like small molecule binding domain
AL541_03950	PF12833	Helix-turn-helix domain
AL541_03955	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_03955	PF03466	LysR substrate binding domain
AL541_03960	PF00106	short chain dehydrogenase
AL541_03965	PF04325	Protein of unknown function (DUF465)
AL541_03970	PF12973	ChrR Cupin-like domain
AL541_03980	PF01297	Periplasmic solute binding protein family
AL541_03985	PF00950	AL541_03985
AL541_03990	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_03995	PF00082	Subtilase family
AL541_03995	PF04151	Bacterial pre-peptidase C-terminal domain
AL541_03995	PF05922	Peptidase inhibitor I9
AL541_04000	PF12759	AL541_04000
AL541_04005	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_04005	PF03466	LysR substrate binding domain
AL541_04010	PF00593	TonB dependent receptor
AL541_04010	PF07715	TonB-dependent Receptor Plug Domain
AL541_04015	PF07859	alpha/beta hydrolase fold
AL541_04020	PF02264	LamB porin
AL541_04020	PF11471	AL541_04020
AL541_04025	PF00356	Bacterial regulatory proteins, lacI family
AL541_04025	PF13377	Periplasmic binding protein-like domain
AL541_04030	PF00367	phosphotransferase system, EIIB
AL541_04030	PF02378	Phosphotransferase system, EIIC
AL541_04035	PF00294	pfkB family carbohydrate kinase
AL541_04040	PF00251	Glycosyl hydrolases family 32 N-terminal domain
AL541_04040	PF08244	Glycosyl hydrolases family 32 C terminal
AL541_04045	PF01872	RibD C-terminal domain
AL541_04050	PF00440	Bacterial regulatory proteins, tetR family
AL541_04055	PF02798	Glutathione S-transferase, N-terminal domain
AL541_04055	PF13410	Glutathione S-transferase, C-terminal domain
AL541_04065	PF00768	D-alanyl-D-alanine carboxypeptidase
AL541_04065	PF07943	Penicillin-binding protein 5, C-terminal domain
AL541_04070	PF05036	Sporulation related domain
AL541_04075	PF08534	Redoxin
AL541_04080	PF00962	Adenosine/AMP deaminase
AL541_04095	PF00313	'Cold-shock' DNA-binding domain
AL541_04100	PF02678	Pirin
AL541_04100	PF05726	Pirin C-terminal cupin domain
AL541_04105	PF01734	Patatin-like phospholipase
AL541_04115	PF03733	AL541_04115
AL541_04120	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL541_04125	PF00884	Sulfatase
AL541_04125	PF08019	AL541_04125
AL541_04130	PF01219	Prokaryotic diacylglycerol kinase
AL541_04140	PF00512	His Kinase A (phospho-acceptor) domain
AL541_04140	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_04145	PF00072	Response regulator receiver domain
AL541_04145	PF00486	Transcriptional regulatory protein, C terminal
AL541_04150	PF16561	AL541_04150
AL541_04160	PF01323	DSBA-like thioredoxin domain
AL541_04170	PF11911	AL541_04170
AL541_04175	PF00255	Glutathione peroxidase
AL541_04180	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL541_04190	PF01553	Acyltransferase
AL541_04190	PF07690	Major Facilitator Superfamily
AL541_04200	PF13443	Cro/C1-type HTH DNA-binding domain
AL541_04205	PF01966	HD domain
AL541_04210	PF07969	Amidohydrolase family
AL541_04215	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
AL541_04220	PF01769	Divalent cation transporter
AL541_04220	PF03448	MgtE intracellular N domain
AL541_04225	PF03109	AL541_04225
AL541_04230	PF13533	Biotin-lipoyl like
AL541_04240	PF12625	AL541_04240
AL541_04240	PF12833	Helix-turn-helix domain
AL541_04255	PF00072	Response regulator receiver domain
AL541_04255	PF00486	Transcriptional regulatory protein, C terminal
AL541_04260	PF00512	His Kinase A (phospho-acceptor) domain
AL541_04260	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_04265	PF12900	Pyridoxamine 5'-phosphate oxidase
AL541_04270	PF00155	Aminotransferase class I and II
AL541_04270	PF00392	Bacterial regulatory proteins, gntR family
AL541_04275	PF13520	Amino acid permease
AL541_04285	PF01037	AsnC family
AL541_04285	PF13404	AsnC-type helix-turn-helix domain
AL541_04290	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_04290	PF03466	LysR substrate binding domain
AL541_04295	PF01810	AL541_04295
AL541_04305	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL541_04305	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL541_04310	PF00072	Response regulator receiver domain
AL541_04310	PF00512	His Kinase A (phospho-acceptor) domain
AL541_04310	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_04315	PF01554	MatE
AL541_04320	PF04363	AL541_04320
AL541_04330	PF04337	Protein of unknown function, DUF480
AL541_04335	PF01541	GIY-YIG catalytic domain
AL541_04345	PF13407	Periplasmic binding protein domain
AL541_04350	PF00072	Response regulator receiver domain
AL541_04350	PF00512	His Kinase A (phospho-acceptor) domain
AL541_04350	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_04350	PF09308	LuxQ, periplasmic
AL541_04355	PF01047	MarR family
AL541_04360	PF13437	HlyD family secretion protein
AL541_04360	PF13533	Biotin-lipoyl like
AL541_04365	PF11168	AL541_04365
AL541_04375	PF00892	EamA-like transporter family
AL541_04380	PF01037	AsnC family
AL541_04380	PF13412	Winged helix-turn-helix DNA-binding
AL541_04385	PF13649	Methyltransferase domain
AL541_04400	PF08239	Bacterial SH3 domain
AL541_04410	PF02355	Protein export membrane protein
AL541_04410	PF07549	SecD/SecF GG Motif
AL541_04410	PF13721	SecD export protein N-terminal TM region
AL541_04415	PF02355	Protein export membrane protein
AL541_04415	PF07549	SecD/SecF GG Motif
AL541_04425	PF01810	AL541_04425
AL541_04430	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_04435	PF00108	Thiolase, N-terminal domain
AL541_04435	PF02803	Thiolase, C-terminal domain
AL541_04440	PF09361	AL541_04440
AL541_04445	PF07167	AL541_04445
AL541_04450	PF09574	AL541_04450
AL541_04455	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL541_04460	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
AL541_04465	PF00384	Molybdopterin oxidoreductase
AL541_04465	PF01568	Molydopterin dinucleotide binding domain
AL541_04465	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL541_04470	PF03927	NapD protein
AL541_04475	PF12838	4Fe-4S dicluster domain
AL541_04480	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_04480	PF07730	Histidine kinase
AL541_04480	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
AL541_04485	PF00072	Response regulator receiver domain
AL541_04485	PF00196	Bacterial regulatory proteins, luxR family
AL541_04500	PF01546	Peptidase family M20/M25/M40
AL541_04500	PF07687	Peptidase dimerisation domain
AL541_04505	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL541_04510	PF16576	AL541_04510
AL541_04515	PF00873	AcrB/AcrD/AcrF family
AL541_04520	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_04525	PF00472	RF-1 domain
AL541_04530	PF13419	Haloacid dehalogenase-like hydrolase
AL541_04535	PF00691	OmpA family
AL541_04535	PF13505	Outer membrane protein beta-barrel domain
AL541_04545	PF00793	DAHP synthetase I family
AL541_04550	PF07690	Major Facilitator Superfamily
AL541_04555	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_04555	PF08447	PAS fold
AL541_04560	PF00456	Transketolase, thiamine diphosphate binding domain
AL541_04560	PF02779	Transketolase, pyrimidine binding domain
AL541_04560	PF02780	Transketolase, C-terminal domain
AL541_04565	PF00923	Transaldolase
AL541_04580	PF04198	Putative sugar-binding domain
AL541_04585	PF00581	Rhodanese-like domain
AL541_04595	PF16130	AL541_04595
AL541_04600	PF00899	ThiF family
AL541_04605	PF00994	Probable molybdopterin binding domain
AL541_04605	PF03453	MoeA N-terminal region (domain I and II)
AL541_04605	PF03454	MoeA C-terminal region (domain IV)
AL541_04610	PF01227	GTP cyclohydrolase I
AL541_04615	PF03595	Voltage-dependent anion channel
AL541_04620	PF00654	Voltage gated chloride channel
AL541_04635	PF00248	Aldo/keto reductase family
AL541_04640	PF00072	Response regulator receiver domain
AL541_04645	PF00989	PAS fold
AL541_04650	PF01256	Carbohydrate kinase
AL541_04650	PF03853	YjeF-related protein N-terminus
AL541_04655	PF00478	IMP dehydrogenase / GMP reductase domain
AL541_04680	PF07971	Glycosyl hydrolase family 92
AL541_04685	PF07971	Glycosyl hydrolase family 92
AL541_04690	PF07971	Glycosyl hydrolase family 92
AL541_04695	PF07971	Glycosyl hydrolase family 92
AL541_04700	PF07971	Glycosyl hydrolase family 92
AL541_04705	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL541_04710	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL541_04715	PF01238	Phosphomannose isomerase type I
AL541_04720	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL541_04720	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL541_04720	PF02378	Phosphotransferase system, EIIC
AL541_04725	PF12833	Helix-turn-helix domain
AL541_04730	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL541_04735	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL541_04740	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL541_04740	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL541_04740	PF02378	Phosphotransferase system, EIIC
AL541_04765	PF01551	Peptidase family M23
AL541_04785	PF00691	OmpA family
AL541_04790	PF00158	Sigma-54 interaction domain
AL541_04790	PF02954	Bacterial regulatory protein, Fis family
AL541_04790	PF13185	GAF domain
AL541_04795	PF00004	ATPase family associated with various cellular activities (AAA)
AL541_04795	PF07724	AAA domain (Cdc48 subfamily)
AL541_04795	PF10431	C-terminal, D2-small domain, of ClpB protein
AL541_04800	PF05638	Protein of unknown function (DUF796)
AL541_04805	PF05954	Phage late control gene D protein (GPD)
AL541_04820	PF09937	AL541_04820
AL541_04830	PF00069	Protein kinase domain
AL541_04835	PF06812	AL541_04835
AL541_04835	PF16989	AL541_04835
AL541_04840	PF05591	AL541_04840
AL541_04845	PF05943	AL541_04845
AL541_04850	PF04965	Gene 25-like lysozyme
AL541_04855	PF05947	AL541_04855
AL541_04860	PF06996	AL541_04860
AL541_04865	PF01037	AsnC family
AL541_04865	PF13404	AsnC-type helix-turn-helix domain
AL541_04870	PF06744	AL541_04870
AL541_04870	PF06761	AL541_04870
AL541_04870	PF14331	AL541_04870
AL541_04875	PF06812	AL541_04875
AL541_04885	PF00498	FHA domain
AL541_04890	PF12790	Type VI secretion lipoprotein
AL541_04895	PF05936	AL541_04895
AL541_04900	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AL541_04905	PF13665	AL541_04905
AL541_04930	PF07690	Major Facilitator Superfamily
AL541_04935	PF02311	AraC-like ligand binding domain
AL541_04935	PF12833	Helix-turn-helix domain
AL541_04940	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_04940	PF03466	LysR substrate binding domain
AL541_04945	PF00106	short chain dehydrogenase
AL541_04950	PF00582	Universal stress protein family
AL541_04960	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AL541_04960	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
AL541_04960	PF04039	AL541_04960
AL541_04960	PF13244	AL541_04960
AL541_04965	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
AL541_04970	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
AL541_04975	PF01899	AL541_04975
AL541_04980	PF04066	AL541_04980
AL541_04985	PF03334	AL541_04985
AL541_04990	PF00392	Bacterial regulatory proteins, gntR family
AL541_04990	PF07702	UTRA domain
AL541_04995	PF02056	Family 4 glycosyl hydrolase
AL541_04995	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AL541_05000	PF00367	phosphotransferase system, EIIB
AL541_05000	PF02378	Phosphotransferase system, EIIC
AL541_05005	PF00501	AMP-binding enzyme
AL541_05005	PF13193	AMP-binding enzyme C-terminal domain
AL541_05010	PF00766	Electron transfer flavoprotein FAD-binding domain
AL541_05010	PF01012	Electron transfer flavoprotein domain
AL541_05015	PF01012	Electron transfer flavoprotein domain
AL541_05020	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AL541_05020	PF13450	NAD(P)-binding Rossmann-like domain
AL541_05030	PF00005	ABC transporter
AL541_05030	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AL541_05035	PF00501	AMP-binding enzyme
AL541_05040	PF02653	AL541_05040
AL541_05045	PF02653	AL541_05045
AL541_05050	PF13458	Periplasmic binding protein
AL541_05055	PF00005	ABC transporter
AL541_05060	PF00501	AMP-binding enzyme
AL541_05065	PF05724	Thiopurine S-methyltransferase (TPMT)
AL541_05095	PF02028	BCCT family transporter
AL541_05100	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_05105	PF00205	Thiamine pyrophosphate enzyme, central domain
AL541_05105	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL541_05105	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL541_05110	PF03306	Alpha-acetolactate decarboxylase
AL541_05115	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_05115	PF03466	LysR substrate binding domain
AL541_05120	PF13419	Haloacid dehalogenase-like hydrolase
AL541_05130	PF10617	AL541_05130
AL541_05135	PF02322	AL541_05135
AL541_05140	PF01654	AL541_05140
AL541_05145	PF00155	Aminotransferase class I and II
AL541_05145	PF00392	Bacterial regulatory proteins, gntR family
AL541_05150	PF12464	Maltose acetyltransferase
AL541_05150	PF14602	Hexapeptide repeat of succinyl-transferase
AL541_05160	PF00924	Mechanosensitive ion channel
AL541_05165	PF08895	AL541_05165
AL541_05170	PF00682	HMGL-like
AL541_05175	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AL541_05175	PF00364	Biotin-requiring enzyme
AL541_05175	PF02785	Biotin carboxylase C-terminal domain
AL541_05175	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL541_05180	PF00378	Enoyl-CoA hydratase/isomerase family
AL541_05185	PF01039	Carboxyl transferase domain
AL541_05190	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL541_05190	PF02770	Acyl-CoA dehydrogenase, middle domain
AL541_05190	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL541_05195	PF00376	MerR family regulatory protein
AL541_05195	PF09278	MerR, DNA binding
AL541_05200	PF00108	Thiolase, N-terminal domain
AL541_05200	PF02803	Thiolase, C-terminal domain
AL541_05205	PF00171	Aldehyde dehydrogenase family
AL541_05210	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL541_05210	PF02770	Acyl-CoA dehydrogenase, middle domain
AL541_05210	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL541_05215	PF00378	Enoyl-CoA hydratase/isomerase family
AL541_05220	PF16113	AL541_05220
AL541_05225	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL541_05225	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL541_05230	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_05235	PF00990	GGDEF domain
AL541_05235	PF13181	Tetratricopeptide repeat
AL541_05240	PF00440	Bacterial regulatory proteins, tetR family
AL541_05240	PF13977	Bacterial transcriptional repressor
AL541_05245	PF00171	Aldehyde dehydrogenase family
AL541_05250	PF00732	GMC oxidoreductase
AL541_05250	PF05199	GMC oxidoreductase
AL541_05255	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL541_05260	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_05265	PF00005	ABC transporter
AL541_05270	PF00881	Nitroreductase family
AL541_05280	PF01145	SPFH domain / Band 7 family
AL541_05285	PF01957	NfeD-like C-terminal, partner-binding
AL541_05290	PF00034	Cytochrome c
AL541_05290	PF03150	Di-haem cytochrome c peroxidase
AL541_05295	PF00072	Response regulator receiver domain
AL541_05295	PF00512	His Kinase A (phospho-acceptor) domain
AL541_05295	PF01627	Hpt domain
AL541_05295	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_05300	PF02566	OsmC-like protein
AL541_05305	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL541_05305	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
AL541_05310	PF10974	AL541_05310
AL541_05315	PF04116	AL541_05315
AL541_05325	PF13590	Domain of unknown function (DUF4136)
AL541_05335	PF09335	AL541_05335
AL541_05350	PF13645	AL541_05350
AL541_05360	PF00563	EAL domain
AL541_05360	PF00990	GGDEF domain
AL541_05365	PF05025	RbsD / FucU transport protein family
AL541_05370	PF00005	ABC transporter
AL541_05375	PF02653	AL541_05375
AL541_05380	PF13407	Periplasmic binding protein domain
AL541_05385	PF00294	pfkB family carbohydrate kinase
AL541_05390	PF00356	Bacterial regulatory proteins, lacI family
AL541_05390	PF13377	Periplasmic binding protein-like domain
AL541_05400	PF04973	AL541_05400
AL541_05405	PF01048	Phosphorylase superfamily
AL541_05410	PF00027	Cyclic nucleotide-binding domain
AL541_05415	PF01497	Periplasmic binding protein
AL541_05420	PF01032	FecCD transport family
AL541_05425	PF01032	FecCD transport family
AL541_05430	PF00005	ABC transporter
AL541_05435	PF13411	MerR HTH family regulatory protein
AL541_05440	PF12833	Helix-turn-helix domain
AL541_05445	PF00593	TonB dependent receptor
AL541_05445	PF07715	TonB-dependent Receptor Plug Domain
AL541_05450	PF09981	Uncharacterized protein conserved in bacteria (DUF2218)
AL541_05455	PF10688	AL541_05455
AL541_05480	PF12805	AL541_05480
AL541_05480	PF13515	AL541_05480
AL541_05485	PF00580	UvrD/REP helicase N-terminal domain
AL541_05485	PF12462	AL541_05485
AL541_05485	PF13361	UvrD-like helicase C-terminal domain
AL541_05490	PF02142	MGS-like domain
AL541_05495	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL541_05500	PF00072	Response regulator receiver domain
AL541_05500	PF00512	His Kinase A (phospho-acceptor) domain
AL541_05500	PF01627	Hpt domain
AL541_05500	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_05510	PF06934	AL541_05510
AL541_05515	PF00486	Transcriptional regulatory protein, C terminal
AL541_05520	PF00884	Sulfatase
AL541_05520	PF14707	C-terminal region of aryl-sulfatase
AL541_05525	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_05525	PF03466	LysR substrate binding domain
AL541_05530	PF00884	Sulfatase
AL541_05530	PF14707	C-terminal region of aryl-sulfatase
AL541_05535	PF04055	Radical SAM superfamily
AL541_05535	PF13186	Iron-sulfur cluster-binding domain
AL541_05540	PF07726	ATPase family associated with various cellular activities (AAA)
AL541_05545	PF01882	AL541_05545
AL541_05550	PF14316	AL541_05550
AL541_05555	PF00092	von Willebrand factor type A domain
AL541_05560	PF13519	von Willebrand factor type A domain
AL541_05565	PF13584	AL541_05565
AL541_05570	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL541_05575	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_05575	PF03466	LysR substrate binding domain
AL541_05580	PF00781	Diacylglycerol kinase catalytic domain
AL541_05585	PF04076	Bacterial OB fold (BOF) protein
AL541_05590	PF13505	Outer membrane protein beta-barrel domain
AL541_05595	PF08774	VRR-NUC domain
AL541_05600	PF07690	Major Facilitator Superfamily
AL541_05610	PF03606	AL541_05610
AL541_05615	PF00487	AL541_05615
AL541_05620	PF00583	Acetyltransferase (GNAT) family
AL541_05625	PF13419	Haloacid dehalogenase-like hydrolase
AL541_05630	PF00072	Response regulator receiver domain
AL541_05630	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_05635	PF00155	Aminotransferase class I and II
AL541_05640	PF01926	50S ribosome-binding GTPase
AL541_05645	PF00072	Response regulator receiver domain
AL541_05645	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_05645	PF00512	His Kinase A (phospho-acceptor) domain
AL541_05645	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_05650	PF00072	Response regulator receiver domain
AL541_05650	PF00563	EAL domain
AL541_05655	PF00072	Response regulator receiver domain
AL541_05655	PF00196	Bacterial regulatory proteins, luxR family
AL541_05660	PF00990	GGDEF domain
AL541_05665	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_05670	PF00072	Response regulator receiver domain
AL541_05670	PF00196	Bacterial regulatory proteins, luxR family
AL541_05680	PF00072	Response regulator receiver domain
AL541_05680	PF01584	CheW-like domain
AL541_05685	PF07963	Prokaryotic N-terminal methylation motif
AL541_05690	PF01925	AL541_05690
AL541_05695	PF00892	EamA-like transporter family
AL541_05700	PF01124	MAPEG family
AL541_05710	PF03372	Endonuclease/Exonuclease/phosphatase family
AL541_05715	PF00893	Small Multidrug Resistance protein
AL541_05720	PF00892	EamA-like transporter family
AL541_05725	PF00293	NUDIX domain
AL541_05730	PF13302	Acetyltransferase (GNAT) domain
AL541_05735	PF00171	Aldehyde dehydrogenase family
AL541_05740	PF04073	Aminoacyl-tRNA editing domain
AL541_05745	PF01645	Conserved region in glutamate synthase
AL541_05745	PF09360	Iron-binding zinc finger CDGSH type
AL541_05750	PF00141	Peroxidase
AL541_05755	PF09722	AL541_05755
AL541_05760	PF08808	AL541_05760
AL541_05765	PF01757	AL541_05765
AL541_05770	PF03206	AL541_05770
AL541_05775	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL541_05780	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_05785	PF03061	Thioesterase superfamily
AL541_05790	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL541_05795	PF00582	Universal stress protein family
AL541_05800	PF01769	Divalent cation transporter
AL541_05800	PF03448	MgtE intracellular N domain
AL541_05810	PF13521	AAA domain
AL541_05835	PF01327	Polypeptide deformylase
AL541_05840	PF13411	MerR HTH family regulatory protein
AL541_05845	PF11158	AL541_05845
AL541_05850	PF02253	Phospholipase A1
AL541_05860	PF04307	AL541_05860
AL541_05870	PF00005	ABC transporter
AL541_05870	PF00664	ABC transporter transmembrane region
AL541_05880	PF00929	Exonuclease
AL541_05885	PF15575	AL541_05885
AL541_05890	PF01212	Beta-eliminating lyase
AL541_05895	PF16691	AL541_05895
AL541_05900	PF14317	AL541_05900
AL541_05910	PF01764	Lipase (class 3)
AL541_05920	PF01610	AL541_05920
AL541_05930	PF12833	Helix-turn-helix domain
AL541_05935	PF02627	Carboxymuconolactone decarboxylase family
AL541_05940	PF00892	EamA-like transporter family
AL541_05945	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_05945	PF03466	LysR substrate binding domain
AL541_05950	PF00753	Metallo-beta-lactamase superfamily
AL541_05960	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_05965	PF02347	Glycine cleavage system P-protein
AL541_05970	PF01597	Glycine cleavage H-protein
AL541_05975	PF00464	Serine hydroxymethyltransferase
AL541_05980	PF01381	Helix-turn-helix
AL541_05980	PF07883	Cupin domain
AL541_05985	PF01571	Aminomethyltransferase folate-binding domain
AL541_05985	PF08669	Glycine cleavage T-protein C-terminal barrel domain
AL541_05990	PF00440	Bacterial regulatory proteins, tetR family
AL541_05995	PF16576	AL541_05995
AL541_06000	PF13533	Biotin-lipoyl like
AL541_06005	PF00873	AcrB/AcrD/AcrF family
AL541_06015	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL541_06015	PF02378	Phosphotransferase system, EIIC
AL541_06020	PF00294	pfkB family carbohydrate kinase
AL541_06025	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL541_06025	PF00381	PTS HPr component phosphorylation site
AL541_06030	PF00356	Bacterial regulatory proteins, lacI family
AL541_06030	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL541_06035	PF03372	Endonuclease/Exonuclease/phosphatase family
AL541_06040	PF13275	S4 domain
AL541_06045	PF00563	EAL domain
AL541_06050	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_06055	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_06060	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_06065	PF00005	ABC transporter
AL541_06070	PF07947	AL541_06070
AL541_06075	PF00465	Iron-containing alcohol dehydrogenase
AL541_06080	PF06719	AL541_06080
AL541_06080	PF12833	Helix-turn-helix domain
AL541_06090	PF00704	Glycosyl hydrolases family 18
AL541_06090	PF06483	AL541_06090
AL541_06090	PF14600	Cellulose-binding domain
AL541_06095	PF00483	Nucleotidyl transferase
AL541_06100	PF01268	Formate--tetrahydrofolate ligase
AL541_06105	PF00294	pfkB family carbohydrate kinase
AL541_06110	PF05981	AL541_06110
AL541_06120	PF13419	Haloacid dehalogenase-like hydrolase
AL541_06130	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_06140	PF04336	AL541_06140
AL541_06145	PF00270	DEAD/DEAH box helicase
AL541_06145	PF00271	Helicase conserved C-terminal domain
AL541_06150	PF00563	EAL domain
AL541_06160	PF09932	AL541_06160
AL541_06165	PF01292	Prokaryotic cytochrome b561
AL541_06170	PF04264	YceI-like domain
AL541_06175	PF00571	CBS domain
AL541_06175	PF01226	Formate/nitrite transporter
AL541_06180	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_06180	PF03466	LysR substrate binding domain
AL541_06185	PF06496	AL541_06185
AL541_06190	PF11398	Protein of unknown function (DUF2813)
AL541_06195	PF00149	Calcineurin-like phosphoesterase
AL541_06195	PF02872	5'-nucleotidase, C-terminal domain
AL541_06200	PF03741	AL541_06200
AL541_06210	PF03831	PhnA protein
AL541_06210	PF08274	PhnA Zinc-Ribbon
AL541_06215	PF06004	Bacterial protein of unknown function (DUF903)
AL541_06220	PF12262	AL541_06220
AL541_06225	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL541_06235	PF01435	Peptidase family M48
AL541_06240	PF03061	Thioesterase superfamily
AL541_06245	PF11869	AL541_06245
AL541_06250	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_06250	PF12793	AL541_06250
AL541_06260	PF03091	CutA1 divalent ion tolerance protein
AL541_06265	PF09997	AL541_06265
AL541_06270	PF03171	2OG-Fe(II) oxygenase superfamily
AL541_06270	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
AL541_06275	PF00226	DnaJ domain
AL541_06275	PF12339	AL541_06275
AL541_06280	PF09818	Predicted ATPase of the ABC class
AL541_06285	PF00563	EAL domain
AL541_06285	PF00990	GGDEF domain
AL541_06285	PF13185	GAF domain
AL541_06290	PF07055	Enoyl reductase FAD binding domain
AL541_06290	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL541_06290	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL541_06295	PF13472	GDSL-like Lipase/Acylhydrolase family
AL541_06300	PF00005	ABC transporter
AL541_06310	PF01266	FAD dependent oxidoreductase
AL541_06315	PF02626	Allophanate hydrolase subunit 2
AL541_06320	PF02682	Allophanate hydrolase subunit 1
AL541_06325	PF03746	LamB/YcsF family
AL541_06330	PF00672	HAMP domain
AL541_06330	PF00989	PAS fold
AL541_06330	PF00990	GGDEF domain
AL541_06330	PF13426	PAS domain
AL541_06330	PF17152	AL541_06330
AL541_06335	PF16363	AL541_06335
AL541_06345	PF00593	TonB dependent receptor
AL541_06345	PF07715	TonB-dependent Receptor Plug Domain
AL541_06350	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_06350	PF03466	LysR substrate binding domain
AL541_06355	PF00583	Acetyltransferase (GNAT) family
AL541_06355	PF13380	CoA binding domain
AL541_06355	PF13549	ATP-grasp domain
AL541_06355	PF13607	Succinyl-CoA ligase like flavodoxin domain
AL541_06360	PF05036	Sporulation related domain
AL541_06365	PF01820	D-ala D-ala ligase N-terminus
AL541_06365	PF07478	D-ala D-ala ligase C-terminus
AL541_06370	PF11782	AL541_06370
AL541_06375	PF01253	Translation initiation factor SUI1
AL541_06380	PF12375	AL541_06380
AL541_06385	PF13175	AAA ATPase domain
AL541_06480	PF05840	AL541_06480
AL541_06530	PF00582	Universal stress protein family
AL541_06535	PF03701	AL541_06535
AL541_06540	PF13729	AL541_06540
AL541_06545	PF11060	AL541_06545
AL541_06550	PF00072	Response regulator receiver domain
AL541_06550	PF00486	Transcriptional regulatory protein, C terminal
AL541_06555	PF00512	His Kinase A (phospho-acceptor) domain
AL541_06555	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_06555	PF11884	Domain of unknown function (DUF3404)
AL541_06560	PF02233	NAD(P) transhydrogenase beta subunit
AL541_06565	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL541_06565	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL541_06565	PF12769	Domain of unknown function (DUF3814)
AL541_06570	PF10115	AL541_06570
AL541_06575	PF10719	AL541_06575
AL541_06580	PF00990	GGDEF domain
AL541_06585	PF00072	Response regulator receiver domain
AL541_06585	PF00990	GGDEF domain
AL541_06590	PF11269	Protein of unknown function (DUF3069)
AL541_06595	PF00005	ABC transporter
AL541_06595	PF03459	TOBE domain
AL541_06600	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_06605	PF13531	Bacterial extracellular solute-binding protein
AL541_06610	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AL541_06610	PF13500	AAA domain
AL541_06615	PF04076	Bacterial OB fold (BOF) protein
AL541_06625	PF05618	Putative ATP-dependant zinc protease
AL541_06630	PF00155	Aminotransferase class I and II
AL541_06635	PF02311	AraC-like ligand binding domain
AL541_06635	PF12833	Helix-turn-helix domain
AL541_06640	PF01554	MatE
AL541_06645	PF13353	4Fe-4S single cluster domain
AL541_06650	PF03477	ATP cone domain
AL541_06650	PF13597	Anaerobic ribonucleoside-triphosphate reductase
AL541_06660	PF03372	Endonuclease/Exonuclease/phosphatase family
AL541_06670	PF04143	AL541_06670
AL541_06675	PF01022	Bacterial regulatory protein, arsR family
AL541_06680	PF00581	Rhodanese-like domain
AL541_06680	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL541_06680	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_06685	PF01177	Asp/Glu/Hydantoin racemase
AL541_06690	PF02567	Phenazine biosynthesis-like protein
AL541_06695	PF04224	AL541_06695
AL541_06700	PF10517	AL541_06700
AL541_06705	PF00384	Molybdopterin oxidoreductase
AL541_06705	PF01568	Molydopterin dinucleotide binding domain
AL541_06715	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_06715	PF03466	LysR substrate binding domain
AL541_06720	PF02634	FdhD/NarQ family
AL541_06725	PF07690	Major Facilitator Superfamily
AL541_06730	PF00072	Response regulator receiver domain
AL541_06730	PF00196	Bacterial regulatory proteins, luxR family
AL541_06735	PF05231	AL541_06735
AL541_06735	PF07730	Histidine kinase
AL541_06740	PF07690	Major Facilitator Superfamily
AL541_06745	PF01238	Phosphomannose isomerase type I
AL541_06750	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
AL541_06755	PF08811	AL541_06755
AL541_06760	PF07394	AL541_06760
AL541_06765	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL541_06765	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL541_06770	PF00085	Thioredoxin
AL541_06775	PF07690	Major Facilitator Superfamily
AL541_06780	PF11756	AL541_06780
AL541_06785	PF13302	Acetyltransferase (GNAT) domain
AL541_06790	PF11661	AL541_06790
AL541_06795	PF00593	TonB dependent receptor
AL541_06795	PF07715	TonB-dependent Receptor Plug Domain
AL541_06800	PF11575	AL541_06800
AL541_06810	PF03605	AL541_06810
AL541_06815	PF01936	NYN domain
AL541_06820	PF13778	AL541_06820
AL541_06825	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL541_06830	PF01226	Formate/nitrite transporter
AL541_06835	PF13806	Rieske-like [2Fe-2S] domain
AL541_06840	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL541_06840	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL541_06840	PF04324	BFD-like [2Fe-2S] binding domain
AL541_06840	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_06845	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL541_06845	PF14760	Rnk N-terminus
AL541_06855	PF00990	GGDEF domain
AL541_06855	PF08447	PAS fold
AL541_06860	PF09084	NMT1/THI5 like
AL541_06865	PF00990	GGDEF domain
AL541_06870	PF00296	Luciferase-like monooxygenase
AL541_06890	PF05235	CHAD domain
AL541_06895	PF01764	Lipase (class 3)
AL541_06905	PF00128	Alpha amylase, catalytic domain
AL541_06920	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_06920	PF12729	AL541_06920
AL541_06925	PF00842	Alanine racemase, C-terminal domain
AL541_06925	PF01168	Alanine racemase, N-terminal domain
AL541_06930	PF03591	AL541_06930
AL541_06935	PF05437	AL541_06935
AL541_06940	PF01565	FAD binding domain
AL541_06940	PF09330	D-lactate dehydrogenase, membrane binding
AL541_06945	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_06945	PF03466	LysR substrate binding domain
AL541_06960	PF05762	VWA domain containing CoxE-like protein
AL541_06965	PF07728	AAA domain (dynein-related subfamily)
AL541_06965	PF12592	Protein of unknown function (DUF3763)
AL541_06970	PF00293	NUDIX domain
AL541_06975	PF01212	Beta-eliminating lyase
AL541_06980	PF00034	Cytochrome c
AL541_06985	PF03606	AL541_06985
AL541_06990	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL541_06995	PF08212	Lipocalin-like domain
AL541_07000	PF00031	Cystatin domain
AL541_07005	PF13476	AAA domain
AL541_07005	PF13558	Putative exonuclease SbcCD, C subunit
AL541_07010	PF00149	Calcineurin-like phosphoesterase
AL541_07010	PF12320	Type 5 capsule protein repressor C-terminal domain
AL541_07020	PF05488	PAAR motif
AL541_07025	PF05954	Phage late control gene D protein (GPD)
AL541_07030	PF05638	Protein of unknown function (DUF796)
AL541_07035	PF00004	ATPase family associated with various cellular activities (AAA)
AL541_07035	PF07724	AAA domain (Cdc48 subfamily)
AL541_07035	PF10431	C-terminal, D2-small domain, of ClpB protein
AL541_07040	PF06996	AL541_07040
AL541_07045	PF05947	AL541_07045
AL541_07050	PF04965	Gene 25-like lysozyme
AL541_07055	PF07024	ImpE protein
AL541_07060	PF05943	AL541_07060
AL541_07065	PF05943	AL541_07065
AL541_07070	PF05591	AL541_07070
AL541_07075	PF06812	AL541_07075
AL541_07080	PF13672	Protein phosphatase 2C
AL541_07085	PF09867	Uncharacterized protein conserved in bacteria (DUF2094)
AL541_07090	PF06744	AL541_07090
AL541_07090	PF06761	AL541_07090
AL541_07090	PF14331	AL541_07090
AL541_07095	PF00691	OmpA family
AL541_07095	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AL541_07100	PF05936	AL541_07100
AL541_07105	PF12790	Type VI secretion lipoprotein
AL541_07110	PF00498	FHA domain
AL541_07115	PF00069	Protein kinase domain
AL541_07120	PF01627	Hpt domain
AL541_07130	PF13581	Histidine kinase-like ATPase domain
AL541_07135	PF00072	Response regulator receiver domain
AL541_07135	PF07228	Stage II sporulation protein E (SpoIIE)
AL541_07145	PF00043	Glutathione S-transferase, C-terminal domain
AL541_07145	PF13417	Glutathione S-transferase, N-terminal domain
AL541_07150	PF00440	Bacterial regulatory proteins, tetR family
AL541_07155	PF03479	Domain of unknown function (DUF296)
AL541_07160	PF13806	Rieske-like [2Fe-2S] domain
AL541_07165	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL541_07165	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL541_07165	PF04324	BFD-like [2Fe-2S] binding domain
AL541_07165	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_07170	PF00005	ABC transporter
AL541_07175	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_07180	PF13379	NMT1-like family
AL541_07190	PF03861	ANTAR domain
AL541_07195	PF01738	Dienelactone hydrolase family
AL541_07200	PF00591	Glycosyl transferase family, a/b domain
AL541_07200	PF02885	Glycosyl transferase family, helical bundle domain
AL541_07205	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL541_07210	PF00384	Molybdopterin oxidoreductase
AL541_07210	PF01568	Molydopterin dinucleotide binding domain
AL541_07210	PF04324	BFD-like [2Fe-2S] binding domain
AL541_07210	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL541_07215	PF00583	Acetyltransferase (GNAT) family
AL541_07220	PF03222	Tryptophan/tyrosine permease family
AL541_07230	PF00990	GGDEF domain
AL541_07230	PF13374	Tetratricopeptide repeat
AL541_07240	PF00082	Subtilase family
AL541_07240	PF01483	Proprotein convertase P-domain
AL541_07250	PF06445	GyrI-like small molecule binding domain
AL541_07250	PF10604	Polyketide cyclase / dehydrase and lipid transport
AL541_07255	PF00512	His Kinase A (phospho-acceptor) domain
AL541_07260	PF00072	Response regulator receiver domain
AL541_07260	PF00486	Transcriptional regulatory protein, C terminal
AL541_07295	PF04314	Protein of unknown function (DUF461)
AL541_07300	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_07305	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL541_07305	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL541_07310	PF00474	Sodium:solute symporter family
AL541_07315	PF01081	KDPG and KHG aldolase
AL541_07320	PF00294	pfkB family carbohydrate kinase
AL541_07325	PF07883	Cupin domain
AL541_07330	PF05426	Alginate lyase
AL541_07330	PF07940	Heparinase II/III-like protein
AL541_07335	PF05426	Alginate lyase
AL541_07335	PF07940	Heparinase II/III-like protein
AL541_07340	PF08787	Alginate lyase
AL541_07345	PF00754	F5/8 type C domain
AL541_07345	PF08787	Alginate lyase
AL541_07350	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AL541_07360	PF08787	Alginate lyase
AL541_07365	PF01554	MatE
AL541_07370	PF00392	Bacterial regulatory proteins, gntR family
AL541_07370	PF07729	FCD domain
AL541_07375	PF00392	Bacterial regulatory proteins, gntR family
AL541_07375	PF07729	FCD domain
AL541_07380	PF00027	Cyclic nucleotide-binding domain
AL541_07380	PF00571	CBS domain
AL541_07380	PF03445	AL541_07380
AL541_07380	PF10335	AL541_07380
AL541_07385	PF00929	Exonuclease
AL541_07390	PF00474	Sodium:solute symporter family
AL541_07400	PF08883	Dopa 4,5-dioxygenase family
AL541_07405	PF00676	Dehydrogenase E1 component
AL541_07410	PF02779	Transketolase, pyrimidine binding domain
AL541_07410	PF02780	Transketolase, C-terminal domain
AL541_07415	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL541_07415	PF00364	Biotin-requiring enzyme
AL541_07415	PF02817	e3 binding domain
AL541_07420	PF00766	Electron transfer flavoprotein FAD-binding domain
AL541_07420	PF01012	Electron transfer flavoprotein domain
AL541_07425	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AL541_07425	PF13450	NAD(P)-binding Rossmann-like domain
AL541_07430	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_07430	PF03466	LysR substrate binding domain
AL541_07435	PF01965	DJ-1/PfpI family
AL541_07440	PF13417	Glutathione S-transferase, N-terminal domain
AL541_07445	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_07445	PF03466	LysR substrate binding domain
AL541_07450	PF00775	Dioxygenase
AL541_07455	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_07460	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_07465	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_07470	PF00005	ABC transporter
AL541_07480	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL541_07485	PF12680	SnoaL-like domain
AL541_07490	PF12525	AL541_07490
AL541_07500	PF02028	BCCT family transporter
AL541_07505	PF01244	Membrane dipeptidase (Peptidase family M19)
AL541_07510	PF00171	Aldehyde dehydrogenase family
AL541_07515	PF01042	Endoribonuclease L-PSP
AL541_07520	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_07520	PF03466	LysR substrate binding domain
AL541_07525	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL541_07530	PF01040	UbiA prenyltransferase family
AL541_07535	PF03626	AL541_07535
AL541_07540	PF00510	Cytochrome c oxidase subunit III
AL541_07545	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL541_07550	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AL541_07550	PF06481	COX Aromatic Rich Motif
AL541_07555	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_07560	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL541_07560	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL541_07565	PF16113	AL541_07565
AL541_07570	PF00378	Enoyl-CoA hydratase/isomerase family
AL541_07575	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL541_07575	PF02770	Acyl-CoA dehydrogenase, middle domain
AL541_07575	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL541_07580	PF00171	Aldehyde dehydrogenase family
AL541_07585	PF00108	Thiolase, N-terminal domain
AL541_07585	PF02803	Thiolase, C-terminal domain
AL541_07590	PF00376	MerR family regulatory protein
AL541_07590	PF09278	MerR, DNA binding
AL541_07595	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL541_07595	PF02770	Acyl-CoA dehydrogenase, middle domain
AL541_07595	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL541_07600	PF01039	Carboxyl transferase domain
AL541_07605	PF00378	Enoyl-CoA hydratase/isomerase family
AL541_07610	PF00682	HMGL-like
AL541_07615	PF00892	EamA-like transporter family
AL541_07620	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_07620	PF08447	PAS fold
AL541_07620	PF13426	PAS domain
AL541_07625	PF06146	AL541_07625
AL541_07630	PF01914	AL541_07630
AL541_07640	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL541_07645	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL541_07645	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL541_07650	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL541_07650	PF07683	Cobalamin synthesis protein cobW C-terminal domain
AL541_07660	PF01551	Peptidase family M23
AL541_07660	PF04225	Opacity-associated protein A LysM-like domain
AL541_07665	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL541_07670	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL541_07675	PF00132	Bacterial transferase hexapeptide (six repeats)
AL541_07680	PF01979	Amidohydrolase family
AL541_07685	PF01475	Ferric uptake regulator family
AL541_07690	PF08856	AL541_07690
AL541_07695	PF02311	AraC-like ligand binding domain
AL541_07695	PF12833	Helix-turn-helix domain
AL541_07700	PF01925	AL541_07700
AL541_07715	PF02129	X-Pro dipeptidyl-peptidase (S15 family)
AL541_07720	PF01738	Dienelactone hydrolase family
AL541_07725	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_07725	PF03466	LysR substrate binding domain
AL541_07730	PF00871	Acetokinase family
AL541_07745	PF00270	DEAD/DEAH box helicase
AL541_07745	PF00271	Helicase conserved C-terminal domain
AL541_07745	PF03880	DbpA RNA binding domain
AL541_07750	PF00575	S1 RNA binding domain
AL541_07750	PF00773	RNB domain
AL541_07750	PF08206	Ribonuclease B OB domain
AL541_07755	PF12833	Helix-turn-helix domain
AL541_07760	PF11225	AL541_07760
AL541_07765	PF12849	PBP superfamily domain
AL541_07770	PF01575	MaoC like domain
AL541_07780	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_07780	PF08447	PAS fold
AL541_07785	PF00005	ABC transporter
AL541_07790	PF00563	EAL domain
AL541_07790	PF12792	AL541_07790
AL541_07795	PF01614	Bacterial transcriptional regulator
AL541_07795	PF08279	HTH domain
AL541_07800	PF00491	Arginase family
AL541_07810	PF00270	DEAD/DEAH box helicase
AL541_07810	PF00271	Helicase conserved C-terminal domain
AL541_07815	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL541_07825	PF01470	Pyroglutamyl peptidase
AL541_07835	PF00313	'Cold-shock' DNA-binding domain
AL541_07845	PF00291	Pyridoxal-phosphate dependent enzyme
AL541_07850	PF11840	AL541_07850
AL541_07855	PF09905	Uncharacterized conserved protein (DUF2132)
AL541_07860	PF00270	DEAD/DEAH box helicase
AL541_07860	PF00271	Helicase conserved C-terminal domain
AL541_07865	PF07690	Major Facilitator Superfamily
AL541_07870	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_07870	PF03466	LysR substrate binding domain
AL541_07880	PF12843	AL541_07880
AL541_07885	PF06945	AL541_07885
AL541_07885	PF14375	AL541_07885
AL541_07890	PF08888	HopJ type III effector protein
AL541_07900	PF01329	Pterin 4 alpha carbinolamine dehydratase
AL541_07905	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
AL541_07910	PF00501	AMP-binding enzyme
AL541_07910	PF13193	AMP-binding enzyme C-terminal domain
AL541_07910	PF16177	AL541_07910
AL541_07915	PF13489	Methyltransferase domain
AL541_07920	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_07920	PF03466	LysR substrate binding domain
AL541_07925	PF01545	Cation efflux family
AL541_07930	PF00892	EamA-like transporter family
AL541_07940	PF00465	Iron-containing alcohol dehydrogenase
AL541_07945	PF07995	Glucose / Sorbosone dehydrogenase
AL541_07950	PF02016	LD-carboxypeptidase
AL541_07955	PF13419	Haloacid dehalogenase-like hydrolase
AL541_07960	PF00210	Ferritin-like domain
AL541_07965	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_07965	PF00672	HAMP domain
AL541_07965	PF12729	AL541_07965
AL541_07985	PF13437	HlyD family secretion protein
AL541_07990	PF00072	Response regulator receiver domain
AL541_07995	PF02321	Outer membrane efflux protein
AL541_08000	PF00005	ABC transporter
AL541_08000	PF00664	ABC transporter transmembrane region
AL541_08005	PF00005	ABC transporter
AL541_08005	PF00664	ABC transporter transmembrane region
AL541_08015	PF00140	Sigma-70 factor, region 1
AL541_08015	PF04542	Sigma-70 region 2
AL541_08015	PF04545	Sigma-70, region 4
AL541_08020	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_08020	PF00990	GGDEF domain
AL541_08025	PF03889	AL541_08025
AL541_08030	PF00313	'Cold-shock' DNA-binding domain
AL541_08035	PF07152	YaeQ protein
AL541_08045	PF00462	Glutaredoxin
AL541_08050	PF00691	OmpA family
AL541_08055	PF13462	Thioredoxin
AL541_08060	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL541_08060	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL541_08065	PF01040	UbiA prenyltransferase family
AL541_08070	PF02628	AL541_08070
AL541_08080	PF02104	AL541_08080
AL541_08085	PF11137	AL541_08085
AL541_08090	PF00510	Cytochrome c oxidase subunit III
AL541_08095	PF04442	Cytochrome c oxidase assembly protein CtaG/Cox11
AL541_08100	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL541_08105	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AL541_08105	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
AL541_08105	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL541_08110	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL541_08110	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL541_08110	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL541_08110	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL541_08115	PF00583	Acetyltransferase (GNAT) family
AL541_08120	PF01810	AL541_08120
AL541_08125	PF02311	AraC-like ligand binding domain
AL541_08125	PF12833	Helix-turn-helix domain
AL541_08130	PF03591	AL541_08130
AL541_08135	PF05437	AL541_08135
AL541_08140	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL541_08145	PF00267	Gram-negative porin
AL541_08150	PF13609	Gram-negative porin
AL541_08155	PF00892	EamA-like transporter family
AL541_08160	PF00462	Glutaredoxin
AL541_08175	PF07690	Major Facilitator Superfamily
AL541_08180	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_08180	PF03466	LysR substrate binding domain
AL541_08185	PF00563	EAL domain
AL541_08185	PF00990	GGDEF domain
AL541_08190	PF01551	Peptidase family M23
AL541_08190	PF04225	Opacity-associated protein A LysM-like domain
AL541_08200	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL541_08205	PF06912	AL541_08205
AL541_08215	PF07670	Nucleoside recognition
AL541_08220	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_08220	PF00672	HAMP domain
AL541_08220	PF02743	Cache domain
AL541_08230	PF03222	Tryptophan/tyrosine permease family
AL541_08240	PF13560	Helix-turn-helix domain
AL541_08250	PF03928	Domain of unknown function (DUF336)
AL541_08255	PF00248	Aldo/keto reductase family
AL541_08260	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_08260	PF03466	LysR substrate binding domain
AL541_08265	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_08265	PF12793	AL541_08265
AL541_08270	PF08534	Redoxin
AL541_08280	PF01638	HxlR-like helix-turn-helix
AL541_08285	PF02525	Flavodoxin-like fold
AL541_08290	PF01022	Bacterial regulatory protein, arsR family
AL541_08295	PF01758	Sodium Bile acid symporter family
AL541_08300	PF12833	Helix-turn-helix domain
AL541_08305	PF01161	Phosphatidylethanolamine-binding protein
AL541_08310	PF02567	Phenazine biosynthesis-like protein
AL541_08315	PF13437	HlyD family secretion protein
AL541_08320	PF00005	ABC transporter
AL541_08325	PF12698	ABC-2 family transporter protein
AL541_08335	PF00384	Molybdopterin oxidoreductase
AL541_08335	PF01568	Molydopterin dinucleotide binding domain
AL541_08335	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL541_08335	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_08335	PF12838	4Fe-4S dicluster domain
AL541_08335	PF13510	2Fe-2S iron-sulfur cluster binding domain
AL541_08335	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL541_08345	PF02321	Outer membrane efflux protein
AL541_08350	PF11604	Copper binding periplasmic protein CusF
AL541_08350	PF16576	AL541_08350
AL541_08355	PF00873	AcrB/AcrD/AcrF family
AL541_08365	PF13354	Beta-lactamase enzyme family
AL541_08370	PF00990	GGDEF domain
AL541_08370	PF01590	GAF domain
AL541_08380	PF02962	5-carboxymethyl-2-hydroxymuconate isomerase
AL541_08385	PF05656	AL541_08385
AL541_08390	PF01541	GIY-YIG catalytic domain
AL541_08395	PF11333	AL541_08395
AL541_08400	PF13412	Winged helix-turn-helix DNA-binding
AL541_08405	PF03320	Bacterial fructose-1,6-bisphosphatase, glpX-encoded
AL541_08410	PF06005	Protein of unknown function (DUF904)
AL541_08415	PF03737	Demethylmenaquinone methyltransferase
AL541_08420	PF01040	UbiA prenyltransferase family
AL541_08425	PF00004	ATPase family associated with various cellular activities (AAA)
AL541_08425	PF07724	AAA domain (Cdc48 subfamily)
AL541_08430	PF00227	Proteasome subunit
AL541_08435	PF05036	Sporulation related domain
AL541_08440	PF00356	Bacterial regulatory proteins, lacI family
AL541_08440	PF13377	Periplasmic binding protein-like domain
AL541_08445	PF00270	DEAD/DEAH box helicase
AL541_08445	PF00271	Helicase conserved C-terminal domain
AL541_08455	PF01197	Ribosomal protein L31
AL541_08460	PF00338	Ribosomal protein S10p/S20e
AL541_08465	PF00297	Ribosomal protein L3
AL541_08470	PF00573	Ribosomal protein L4/L1 family
AL541_08475	PF00276	Ribosomal protein L23
AL541_08480	PF00181	Ribosomal Proteins L2, RNA binding domain
AL541_08480	PF03947	Ribosomal Proteins L2, C-terminal domain
AL541_08485	PF00203	Ribosomal protein S19
AL541_08490	PF00237	Ribosomal protein L22p/L17e
AL541_08495	PF00189	Ribosomal protein S3, C-terminal domain
AL541_08495	PF07650	KH domain
AL541_08500	PF00252	Ribosomal protein L16p/L10e
AL541_08505	PF00831	Ribosomal L29 protein
AL541_08510	PF00366	Ribosomal protein S17
AL541_08515	PF00238	Ribosomal protein L14p/L23e
AL541_08520	PF00467	KOW motif
AL541_08520	PF17136	AL541_08520
AL541_08525	PF00281	Ribosomal protein L5
AL541_08525	PF00673	ribosomal L5P family C-terminus
AL541_08530	PF00253	Ribosomal protein S14p/S29e
AL541_08535	PF00410	Ribosomal protein S8
AL541_08540	PF00347	Ribosomal protein L6
AL541_08545	PF00861	Ribosomal L18p/L5e family
AL541_08550	PF00333	Ribosomal protein S5, N-terminal domain
AL541_08550	PF03719	Ribosomal protein S5, C-terminal domain
AL541_08555	PF00327	Ribosomal protein L30p/L7e
AL541_08560	PF00828	Ribosomal protein L18e/L15
AL541_08565	PF00344	SecY translocase
AL541_08570	PF00444	Ribosomal protein L36
AL541_08575	PF00416	Ribosomal protein S13/S18
AL541_08580	PF00411	Ribosomal protein S11
AL541_08585	PF00163	Ribosomal protein S4/S9 N-terminal domain
AL541_08585	PF01479	S4 domain
AL541_08590	PF01000	RNA polymerase Rpb3/RpoA insert domain
AL541_08590	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
AL541_08590	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain
AL541_08595	PF01196	Ribosomal protein L17
AL541_08600	PF11075	AL541_08600
AL541_08605	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL541_08605	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL541_08610	PF04225	Opacity-associated protein A LysM-like domain
AL541_08610	PF08525	AL541_08610
AL541_08615	PF13673	Acetyltransferase (GNAT) domain
AL541_08620	PF00270	DEAD/DEAH box helicase
AL541_08620	PF00271	Helicase conserved C-terminal domain
AL541_08620	PF03880	DbpA RNA binding domain
AL541_08625	PF00027	Cyclic nucleotide-binding domain
AL541_08630	PF00149	Calcineurin-like phosphoesterase
AL541_08630	PF02872	5'-nucleotidase, C-terminal domain
AL541_08635	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL541_08640	PF01507	Phosphoadenosine phosphosulfate reductase family
AL541_08645	PF00009	Elongation factor Tu GTP binding domain
AL541_08650	PF02080	TrkA-C domain
AL541_08650	PF03600	Citrate transporter
AL541_08655	PF01583	Adenylylsulphate kinase
AL541_08660	PF10987	AL541_08660
AL541_08665	PF11736	Protein of unknown function (DUF3299)
AL541_08670	PF02687	AL541_08670
AL541_08670	PF12704	MacB-like periplasmic core domain
AL541_08675	PF00005	ABC transporter
AL541_08680	PF10986	AL541_08680
AL541_08685	PF10795	AL541_08685
AL541_08690	PF09695	AL541_08690
AL541_08695	PF06526	Protein of unknown function (DUF1107)
AL541_08700	PF01625	Peptide methionine sulfoxide reductase
AL541_08705	PF01103	Surface antigen
AL541_08705	PF07244	Surface antigen variable number repeat
AL541_08705	PF17243	AL541_08705
AL541_08710	PF04357	AL541_08710
AL541_08715	PF06094	AIG2-like family
AL541_08720	PF10973	AL541_08720
AL541_08725	PF00719	Inorganic pyrophosphatase
AL541_08730	PF00316	Fructose-1-6-bisphosphatase
AL541_08740	PF01225	Mur ligase family, catalytic domain
AL541_08740	PF02875	Mur ligase family, glutamate ligase domain
AL541_08740	PF08245	Mur ligase middle domain
AL541_08745	PF02441	Flavoprotein
AL541_08750	PF13343	Bacterial extracellular solute-binding protein
AL541_08755	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_08760	PF00005	ABC transporter
AL541_08765	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_08765	PF03466	LysR substrate binding domain
AL541_08770	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL541_08775	PF00582	Universal stress protein family
AL541_08780	PF06808	AL541_08780
AL541_08780	PF11874	AL541_08780
AL541_08790	PF16868	AL541_08790
AL541_08800	PF01316	Arginine repressor, DNA binding domain
AL541_08800	PF02863	Arginine repressor, C-terminal domain
AL541_08805	PF00056	lactate/malate dehydrogenase, NAD binding domain
AL541_08805	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AL541_08815	PF00348	Polyprenyl synthetase
AL541_08820	PF00829	Ribosomal prokaryotic L21 protein
AL541_08825	PF01016	Ribosomal L27 protein
AL541_08830	PF01018	GTP1/OBG
AL541_08830	PF01926	50S ribosome-binding GTPase
AL541_08835	PF06738	AL541_08835
AL541_08840	PF12821	AL541_08840
AL541_08845	PF00186	Dihydrofolate reductase
AL541_08850	PF00149	Calcineurin-like phosphoesterase
AL541_08855	PF04379	Protein of unknown function (DUF525)
AL541_08860	PF00398	Ribosomal RNA adenine dimethylase
AL541_08865	PF04166	Pyridoxal phosphate biosynthetic protein PdxA
AL541_08870	PF09312	SurA N-terminal domain
AL541_08870	PF13616	PPIC-type PPIASE domain
AL541_08875	PF03968	OstA-like protein
AL541_08875	PF04453	Organic solvent tolerance protein
AL541_08880	PF00226	DnaJ domain
AL541_08880	PF05099	Tellurite resistance protein TerB
AL541_08885	PF04784	AL541_08885
AL541_08890	PF00694	Aconitase C-terminal domain
AL541_08895	PF00330	Aconitase family (aconitate hydratase)
AL541_08900	PF00180	Isocitrate/isopropylmalate dehydrogenase
AL541_08905	PF00682	HMGL-like
AL541_08905	PF08502	LeuA allosteric (dimerisation) domain
AL541_08915	PF08239	Bacterial SH3 domain
AL541_08920	PF01569	PAP2 superfamily
AL541_08925	PF13528	Glycosyl transferase family 1
AL541_08930	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_08930	PF03466	LysR substrate binding domain
AL541_08935	PF00501	AMP-binding enzyme
AL541_08940	PF00205	Thiamine pyrophosphate enzyme, central domain
AL541_08940	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL541_08940	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL541_08945	PF10369	Small subunit of acetolactate synthase
AL541_08945	PF13710	ACT domain
AL541_08950	PF00990	GGDEF domain
AL541_08950	PF02743	Cache domain
AL541_08950	PF13426	PAS domain
AL541_08955	PF00392	Bacterial regulatory proteins, gntR family
AL541_08960	PF00224	Pyruvate kinase, barrel domain
AL541_08960	PF02887	Pyruvate kinase, alpha/beta domain
AL541_08965	PF00455	AL541_08965
AL541_08965	PF08220	DeoR-like helix-turn-helix domain
AL541_08970	PF01380	SIS domain
AL541_08970	PF13522	Glutamine amidotransferase domain
AL541_08975	PF00465	Iron-containing alcohol dehydrogenase
AL541_08980	PF02733	Dak1 domain
AL541_08985	PF02734	DAK2 domain
AL541_08990	PF00381	PTS HPr component phosphorylation site
AL541_08990	PF00391	PEP-utilising enzyme, mobile domain
AL541_08990	PF02896	PEP-utilising enzyme, TIM barrel domain
AL541_08990	PF03610	PTS system fructose IIA component
AL541_08990	PF05524	PEP-utilising enzyme, N-terminal
AL541_08995	PF00158	Sigma-54 interaction domain
AL541_08995	PF00989	PAS fold
AL541_08995	PF02954	Bacterial regulatory protein, Fis family
AL541_09000	PF05068	Mannitol repressor
AL541_09005	PF01232	Mannitol dehydrogenase Rossmann domain
AL541_09005	PF08125	Mannitol dehydrogenase C-terminal domain
AL541_09010	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL541_09010	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL541_09010	PF02378	Phosphotransferase system, EIIC
AL541_09015	PF13444	Acetyltransferase (GNAT) domain
AL541_09020	PF04402	Protein of unknown function (DUF541)
AL541_09030	PF03180	NLPA lipoprotein
AL541_09035	PF00589	Phage integrase family
AL541_09035	PF13356	Domain of unknown function (DUF4102)
AL541_09065	PF14350	AL541_09065
AL541_09070	PF06114	Domain of unknown function (DUF955)
AL541_09085	PF07804	HipA-like C-terminal domain
AL541_09085	PF13657	HipA N-terminal domain
AL541_09100	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AL541_09105	PF01396	AL541_09105
AL541_09105	PF04471	Restriction endonuclease
AL541_09110	PF04245	AL541_09110
AL541_09120	PF07804	HipA-like C-terminal domain
AL541_09120	PF13657	HipA N-terminal domain
AL541_09125	PF01381	Helix-turn-helix
AL541_09135	PF00140	Sigma-70 factor, region 1
AL541_09135	PF03979	Sigma-70 factor, region 1
AL541_09135	PF04539	Sigma-70 region 3
AL541_09135	PF04542	Sigma-70 region 2
AL541_09135	PF04545	Sigma-70, region 4
AL541_09135	PF04546	Sigma-70, non-essential region
AL541_09140	PF01807	CHC2 zinc finger
AL541_09140	PF08275	DNA primase catalytic core, N-terminal domain
AL541_09140	PF08278	DNA primase DnaG DnaB-binding
AL541_09140	PF10410	DnaB-helicase binding domain of primase
AL541_09140	PF13155	Toprim-like
AL541_09145	PF09424	Yqey-like protein
AL541_09150	PF01165	Ribosomal protein S21
AL541_09155	PF00814	Glycoprotease family
AL541_09160	PF00561	alpha/beta hydrolase fold
AL541_09165	PF02660	AL541_09165
AL541_09170	PF02152	Dihydroneopterin aldolase
AL541_09175	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL541_09180	PF02673	AL541_09180
AL541_09185	PF01743	Poly A polymerase head domain
AL541_09185	PF01966	HD domain
AL541_09185	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL541_09190	PF01471	Putative peptidoglycan binding domain
AL541_09190	PF13401	AAA domain
AL541_09195	PF16537	AL541_09195
AL541_09200	PF01019	Gamma-glutamyltranspeptidase
AL541_09205	PF08239	Bacterial SH3 domain
AL541_09210	PF01384	AL541_09210
AL541_09215	PF01865	Protein of unknown function DUF47
AL541_09220	PF01928	CYTH domain
AL541_09220	PF05235	CHAD domain
AL541_09225	PF07885	Ion channel
AL541_09230	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_09235	PF03710	Glutamate-ammonia ligase adenylyltransferase
AL541_09235	PF08335	GlnD PII-uridylyltransferase
AL541_09240	PF00294	pfkB family carbohydrate kinase
AL541_09240	PF01467	Cytidylyltransferase
AL541_09245	PF02321	Outer membrane efflux protein
AL541_09250	PF00293	NUDIX domain
AL541_09255	PF06853	AL541_09255
AL541_09260	PF00149	Calcineurin-like phosphoesterase
AL541_09265	PF05728	Uncharacterised protein family (UPF0227)
AL541_09270	PF00204	DNA gyrase B
AL541_09270	PF00986	DNA gyrase B subunit, carboxyl terminus
AL541_09270	PF01751	Toprim domain
AL541_09270	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_09275	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL541_09275	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL541_09280	PF13180	PDZ domain
AL541_09280	PF13365	Trypsin-like peptidase domain
AL541_09285	PF00595	PDZ domain (Also known as DHR or GLGF)
AL541_09285	PF13180	PDZ domain
AL541_09285	PF13365	Trypsin-like peptidase domain
AL541_09290	PF06295	AL541_09290
AL541_09300	PF03969	AFG1-like ATPase
AL541_09310	PF00572	Ribosomal protein L13
AL541_09315	PF00380	Ribosomal protein S9/S16
AL541_09320	PF00355	Rieske [2Fe-2S] domain
AL541_09320	PF10399	Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
AL541_09325	PF00032	Cytochrome b(C-terminal)/b6/petD
AL541_09325	PF00033	Cytochrome b(N-terminal)/b6/petB
AL541_09330	PF02167	Cytochrome C1 family
AL541_09335	PF00043	Glutathione S-transferase, C-terminal domain
AL541_09335	PF13417	Glutathione S-transferase, N-terminal domain
AL541_09340	PF04386	Stringent starvation protein B
AL541_09345	PF04972	BON domain
AL541_09350	PF13580	SIS domain
AL541_09355	PF02021	Uncharacterised protein family UPF0102
AL541_09360	PF04348	LppC putative lipoprotein
AL541_09365	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL541_09380	PF01795	MraW methylase family
AL541_09385	PF04999	AL541_09385
AL541_09390	PF00905	Penicillin binding protein transpeptidase domain
AL541_09390	PF03717	Penicillin-binding Protein dimerisation domain
AL541_09395	PF01225	Mur ligase family, catalytic domain
AL541_09395	PF02875	Mur ligase family, glutamate ligase domain
AL541_09395	PF08245	Mur ligase middle domain
AL541_09400	PF01225	Mur ligase family, catalytic domain
AL541_09400	PF02875	Mur ligase family, glutamate ligase domain
AL541_09400	PF08245	Mur ligase middle domain
AL541_09405	PF00953	Glycosyl transferase family 4
AL541_09405	PF10555	Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1
AL541_09410	PF02875	Mur ligase family, glutamate ligase domain
AL541_09410	PF08245	Mur ligase middle domain
AL541_09415	PF01098	AL541_09415
AL541_09420	PF03033	Glycosyltransferase family 28 N-terminal domain
AL541_09420	PF04101	Glycosyltransferase family 28 C-terminal domain
AL541_09425	PF01225	Mur ligase family, catalytic domain
AL541_09425	PF02875	Mur ligase family, glutamate ligase domain
AL541_09425	PF08245	Mur ligase middle domain
AL541_09430	PF03799	Cell division protein FtsQ
AL541_09430	PF08478	POTRA domain, FtsQ-type
AL541_09435	PF02491	SHS2 domain inserted in FTSA
AL541_09435	PF14450	Cell division protein FtsA
AL541_09440	PF00091	Tubulin/FtsZ family, GTPase domain
AL541_09440	PF12327	FtsZ family, C-terminal domain
AL541_09445	PF03331	UDP-3-O-acyl N-acetylglycosamine deacetylase
AL541_09450	PF05258	AL541_09450
AL541_09455	PF01043	SecA preprotein cross-linking domain
AL541_09455	PF02810	SEC-C motif
AL541_09455	PF07516	SecA Wing and Scaffold domain
AL541_09455	PF07517	SecA DEAD-like domain
AL541_09460	PF00293	NUDIX domain
AL541_09465	PF01113	Dihydrodipicolinate reductase, N-terminus
AL541_09465	PF05173	Dihydrodipicolinate reductase, C-terminus
AL541_09470	PF00117	Glutamine amidotransferase class-I
AL541_09470	PF00988	Carbamoyl-phosphate synthase small chain, CPSase domain
AL541_09475	PF02142	MGS-like domain
AL541_09475	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL541_09475	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL541_09490	PF01925	AL541_09490
AL541_09495	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_09495	PF03466	LysR substrate binding domain
AL541_09500	PF03458	AL541_09500
AL541_09505	PF01497	Periplasmic binding protein
AL541_09510	PF03186	AL541_09510
AL541_09515	PF01048	Phosphorylase superfamily
AL541_09520	PF07386	AL541_09520
AL541_09525	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_09525	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL541_09530	PF00310	Glutamine amidotransferases class-II
AL541_09530	PF01493	GXGXG motif
AL541_09530	PF01645	Conserved region in glutamate synthase
AL541_09530	PF04898	Glutamate synthase central domain
AL541_09535	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_09535	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL541_09540	PF00310	Glutamine amidotransferases class-II
AL541_09540	PF01493	GXGXG motif
AL541_09540	PF01645	Conserved region in glutamate synthase
AL541_09540	PF04898	Glutamate synthase central domain
AL541_09545	PF04055	Radical SAM superfamily
AL541_09545	PF16199	AL541_09545
AL541_09550	PF00990	GGDEF domain
AL541_09550	PF08448	PAS fold
AL541_09550	PF13188	PAS domain
AL541_09555	PF00072	Response regulator receiver domain
AL541_09555	PF00512	His Kinase A (phospho-acceptor) domain
AL541_09555	PF01627	Hpt domain
AL541_09555	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_09555	PF08448	PAS fold
AL541_09565	PF00072	Response regulator receiver domain
AL541_09565	PF00486	Transcriptional regulatory protein, C terminal
AL541_09575	PF11697	AL541_09575
AL541_09580	PF03737	Demethylmenaquinone methyltransferase
AL541_09595	PF00696	Amino acid kinase family
AL541_09595	PF00742	Homoserine dehydrogenase
AL541_09595	PF01842	ACT domain
AL541_09595	PF03447	Homoserine dehydrogenase, NAD binding domain
AL541_09595	PF13840	ACT domain
AL541_09600	PF00288	GHMP kinases N terminal domain
AL541_09600	PF08544	GHMP kinases C terminal
AL541_09605	PF00291	Pyridoxal-phosphate dependent enzyme
AL541_09605	PF14821	Threonine synthase N terminus
AL541_09610	PF03358	NADPH-dependent FMN reductase
AL541_09615	PF01228	Glycine radical
AL541_09620	PF01261	Xylose isomerase-like TIM barrel
AL541_09630	PF03167	Uracil DNA glycosylase superfamily
AL541_09635	PF01814	Hemerythrin HHE cation binding domain
AL541_09640	PF12065	AL541_09640
AL541_09645	PF01235	AL541_09645
AL541_09650	PF03883	AL541_09650
AL541_09655	PF00270	DEAD/DEAH box helicase
AL541_09655	PF00271	Helicase conserved C-terminal domain
AL541_09660	PF05175	Methyltransferase small domain
AL541_09665	PF05525	AL541_09665
AL541_09670	PF00258	Flavodoxin
AL541_09675	PF00589	Phage integrase family
AL541_09675	PF02899	Phage integrase, N-terminal SAM-like domain
AL541_09680	PF10411	Disulfide bond isomerase protein N-terminus
AL541_09680	PF13098	Thioredoxin-like domain
AL541_09685	PF01368	DHH family
AL541_09685	PF02272	DHHA1 domain
AL541_09695	PF00152	tRNA synthetases class II (D, K and N)
AL541_09695	PF01336	OB-fold nucleic acid binding domain
AL541_09700	PF00158	Sigma-54 interaction domain
AL541_09700	PF02954	Bacterial regulatory protein, Fis family
AL541_09710	PF00248	Aldo/keto reductase family
AL541_09720	PF02976	DNA mismatch repair enzyme MutH
AL541_09725	PF00293	NUDIX domain
AL541_09730	PF00391	PEP-utilising enzyme, mobile domain
AL541_09730	PF01590	GAF domain
AL541_09730	PF02896	PEP-utilising enzyme, TIM barrel domain
AL541_09730	PF05524	PEP-utilising enzyme, N-terminal
AL541_09735	PF01925	AL541_09735
AL541_09740	PF01790	AL541_09740
AL541_09745	PF00303	Thymidylate synthase
AL541_09750	PF08014	AL541_09750
AL541_09755	PF02690	AL541_09755
AL541_09760	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_09760	PF03466	LysR substrate binding domain
AL541_09765	PF01022	Bacterial regulatory protein, arsR family
AL541_09770	PF01649	Ribosomal protein S20
AL541_09775	PF03023	AL541_09775
AL541_09780	PF01687	Riboflavin kinase
AL541_09780	PF06574	FAD synthetase
AL541_09785	PF00133	tRNA synthetases class I (I, L, M and V)
AL541_09785	PF06827	Zinc finger found in FPG and IleRS
AL541_09785	PF08264	Anticodon-binding domain of tRNA
AL541_09790	PF01252	AL541_09790
AL541_09795	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL541_09800	PF02401	LytB protein
AL541_09805	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL541_09810	PF00072	Response regulator receiver domain
AL541_09810	PF04397	LytTr DNA-binding domain
AL541_09815	PF06580	AL541_09815
AL541_09815	PF07694	5TMR of 5TMR-LYT
AL541_09815	PF13492	GAF domain
AL541_09820	PF02554	AL541_09820
AL541_09820	PF13722	AL541_09820
AL541_09825	PF10973	AL541_09825
AL541_09835	PF13580	SIS domain
AL541_09840	PF03702	Uncharacterised protein family (UPF0075)
AL541_09845	PF00933	Glycosyl hydrolase family 3 N terminal domain
AL541_09850	PF00793	DAHP synthetase I family
AL541_09855	PF01817	Chorismate mutase type II
AL541_09855	PF02153	Prephenate dehydrogenase
AL541_09860	PF01551	Peptidase family M23
AL541_09865	PF07238	PilZ domain
AL541_09870	PF00005	ABC transporter
AL541_09870	PF12848	ABC transporter
AL541_09875	PF01464	Transglycosylase SLT domain
AL541_09875	PF14718	Soluble lytic murein transglycosylase L domain
AL541_09880	PF01371	Trp repressor protein
AL541_09885	PF01931	Protein of unknown function DUF84
AL541_09890	PF00800	Prephenate dehydratase
AL541_09890	PF01817	Chorismate mutase type II
AL541_09895	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL541_09900	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_09900	PF01464	Transglycosylase SLT domain
AL541_09905	PF13525	Outer membrane lipoprotein
AL541_09910	PF00849	RNA pseudouridylate synthase
AL541_09910	PF01479	S4 domain
AL541_09915	PF02578	Multi-copper polyphenol oxidoreductase laccase
AL541_09920	PF00004	ATPase family associated with various cellular activities (AAA)
AL541_09920	PF02861	Clp amino terminal domain
AL541_09920	PF07724	AAA domain (Cdc48 subfamily)
AL541_09920	PF10431	C-terminal, D2-small domain, of ClpB protein
AL541_09965	PF08921	Domain of unknown function (DUF1904)
AL541_09970	PF03411	Penicillin-insensitive murein endopeptidase
AL541_09985	PF00037	4Fe-4S binding domain
AL541_09990	PF01136	AL541_09990
AL541_09990	PF16325	AL541_09990
AL541_09995	PF04381	Putative exonuclease, RdgC
AL541_10005	PF00072	Response regulator receiver domain
AL541_10005	PF00486	Transcriptional regulatory protein, C terminal
AL541_10010	PF00512	His Kinase A (phospho-acceptor) domain
AL541_10010	PF00989	PAS fold
AL541_10010	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_10010	PF11808	AL541_10010
AL541_10015	PF12849	PBP superfamily domain
AL541_10020	PF02541	Ppx/GppA phosphatase family
AL541_10025	PF02503	Polyphosphate kinase middle domain
AL541_10025	PF13089	Polyphosphate kinase N-terminal domain
AL541_10025	PF13090	Polyphosphate kinase C-terminal domain
AL541_10030	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_10035	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_10040	PF00005	ABC transporter
AL541_10045	PF01895	PhoU domain
AL541_10050	PF03976	Polyphosphate kinase 2 (PPK2)
AL541_10055	PF03932	CutC family
AL541_10060	PF00578	AhpC/TSA family
AL541_10060	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AL541_10065	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_10065	PF03466	LysR substrate binding domain
AL541_10070	PF01274	Malate synthase
AL541_10075	PF00463	Isocitrate lyase family
AL541_10080	PF00571	CBS domain
AL541_10085	PF00089	Trypsin
AL541_10090	PF02547	Queuosine biosynthesis protein
AL541_10095	PF01702	Queuine tRNA-ribosyltransferase
AL541_10100	PF02699	Preprotein translocase subunit
AL541_10105	PF02355	Protein export membrane protein
AL541_10105	PF07549	SecD/SecF GG Motif
AL541_10105	PF13721	SecD export protein N-terminal TM region
AL541_10110	PF02355	Protein export membrane protein
AL541_10110	PF07549	SecD/SecF GG Motif
AL541_10125	PF00459	Inositol monophosphatase family
AL541_10130	PF00588	SpoU rRNA Methylase family
AL541_10135	PF02082	Transcriptional regulator
AL541_10140	PF00266	Aminotransferase class-V
AL541_10145	PF01592	NifU-like N terminal domain
AL541_10150	PF01521	Iron-sulphur cluster biosynthesis
AL541_10155	PF00226	DnaJ domain
AL541_10155	PF07743	HSCB C-terminal oligomerisation domain
AL541_10160	PF00012	Hsp70 protein
AL541_10165	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL541_10170	PF04384	Iron-sulphur cluster assembly
AL541_10175	PF00883	Cytosol aminopeptidase family, catalytic domain
AL541_10175	PF12404	AL541_10175
AL541_10180	PF00334	Nucleoside diphosphate kinase
AL541_10185	PF04055	Radical SAM superfamily
AL541_10190	PF13413	Helix-turn-helix domain
AL541_10190	PF13464	AL541_10190
AL541_10195	PF04551	GcpE protein
AL541_10200	PF03129	Anticodon binding domain
AL541_10200	PF13393	Histidyl-tRNA synthetase
AL541_10205	PF09976	Tetratricopeptide repeat
AL541_10210	PF13360	PQQ-like domain
AL541_10215	PF01926	50S ribosome-binding GTPase
AL541_10215	PF14714	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal
AL541_10225	PF07191	zinc-ribbons
AL541_10230	PF02601	AL541_10230
AL541_10230	PF13742	AL541_10230
AL541_10235	PF00478	IMP dehydrogenase / GMP reductase domain
AL541_10235	PF00571	CBS domain
AL541_10240	PF00117	Glutamine amidotransferase class-I
AL541_10240	PF00958	GMP synthase C terminal domain
AL541_10240	PF02540	NAD synthase
AL541_10245	PF03553	AL541_10245
AL541_10250	PF00182	Chitinase class I
AL541_10255	PF01184	AL541_10255
AL541_10260	PF01235	AL541_10260
AL541_10265	PF01266	FAD dependent oxidoreductase
AL541_10270	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_10270	PF03466	LysR substrate binding domain
AL541_10275	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL541_10280	PF00202	Aminotransferase class-III
AL541_10285	PF05853	Prokaryotic protein of unknown function (DUF849)
AL541_10290	PF03553	AL541_10290
AL541_10295	PF09335	AL541_10295
AL541_10300	PF00583	Acetyltransferase (GNAT) family
AL541_10300	PF00795	Carbon-nitrogen hydrolase
AL541_10305	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_10305	PF03466	LysR substrate binding domain
AL541_10310	PF13505	Outer membrane protein beta-barrel domain
AL541_10330	PF01668	SmpB protein
AL541_10335	PF03364	Polyketide cyclase / dehydrase and lipid transport
AL541_10340	PF03658	RnfH family Ubiquitin
AL541_10345	PF04355	SmpA / OmlA family
AL541_10350	PF00583	Acetyltransferase (GNAT) family
AL541_10355	PF02463	RecF/RecN/SMC N terminal domain
AL541_10360	PF11301	AL541_10360
AL541_10365	PF01513	ATP-NAD kinase
AL541_10370	PF01025	GrpE
AL541_10375	PF00375	Sodium:dicarboxylate symporter family
AL541_10380	PF00012	Hsp70 protein
AL541_10385	PF00226	DnaJ domain
AL541_10385	PF00684	DnaJ central domain
AL541_10385	PF01556	DnaJ C terminal domain
AL541_10390	PF07963	Prokaryotic N-terminal methylation motif
AL541_10390	PF16732	AL541_10390
AL541_10395	PF07963	Prokaryotic N-terminal methylation motif
AL541_10395	PF12019	Type II transport protein GspH
AL541_10410	PF07963	Prokaryotic N-terminal methylation motif
AL541_10415	PF03806	AL541_10415
AL541_10420	PF14437	AL541_10420
AL541_10430	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_10430	PF01464	Transglycosylase SLT domain
AL541_10435	PF02769	AIR synthase related protein, C-terminal domain
AL541_10435	PF13507	CobB/CobQ-like glutamine amidotransferase domain
AL541_10440	PF12286	AL541_10440
AL541_10450	PF00593	TonB dependent receptor
AL541_10450	PF07715	TonB-dependent Receptor Plug Domain
AL541_10455	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL541_10460	PF11810	AL541_10460
AL541_10465	PF01546	Peptidase family M20/M25/M40
AL541_10465	PF07687	Peptidase dimerisation domain
AL541_10470	PF00860	Permease family
AL541_10475	PF00156	Phosphoribosyl transferase domain
AL541_10480	PF06500	Alpha/beta hydrolase of unknown function (DUF1100)
AL541_10485	PF07417	Transcriptional regulator Crl
AL541_10490	PF00696	Amino acid kinase family
AL541_10490	PF01472	PUA domain
AL541_10495	PF00171	Aldehyde dehydrogenase family
AL541_10500	PF03477	ATP cone domain
AL541_10505	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL541_10505	PF01872	RibD C-terminal domain
AL541_10510	PF00677	Lumazine binding domain
AL541_10515	PF00925	GTP cyclohydrolase II
AL541_10515	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL541_10520	PF00885	6,7-dimethyl-8-ribityllumazine synthase
AL541_10525	PF01029	NusB family
AL541_10530	PF00586	AIR synthase related protein, N-terminal domain
AL541_10530	PF02769	AIR synthase related protein, C-terminal domain
AL541_10535	PF04608	Phosphatidylglycerophosphatase A
AL541_10540	PF02779	Transketolase, pyrimidine binding domain
AL541_10540	PF02780	Transketolase, C-terminal domain
AL541_10540	PF13292	1-deoxy-D-xylulose-5-phosphate synthase
AL541_10545	PF00348	Polyprenyl synthetase
AL541_10550	PF02609	Exonuclease VII small subunit
AL541_10555	PF01618	AL541_10555
AL541_10560	PF00691	OmpA family
AL541_10560	PF13677	AL541_10560
AL541_10565	PF02568	Thiamine biosynthesis protein (ThiI)
AL541_10565	PF02926	THUMP domain
AL541_10570	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_10570	PF03466	LysR substrate binding domain
AL541_10575	PF12697	Alpha/beta hydrolase family
AL541_10580	PF04241	AL541_10580
AL541_10585	PF01728	FtsJ-like methyltransferase
AL541_10590	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL541_10590	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL541_10595	PF03641	Possible lysine decarboxylase
AL541_10595	PF11892	Domain of unknown function (DUF3412)
AL541_10595	PF14793	Domain of unknown function (DUF4478)
AL541_10600	PF00990	GGDEF domain
AL541_10610	PF14489	QueF-like protein
AL541_10610	PF14819	Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term
AL541_10615	PF07348	Syd protein (SUKH-2)
AL541_10620	PF10071	AL541_10620
AL541_10625	PF03180	NLPA lipoprotein
AL541_10630	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_10635	PF00005	ABC transporter
AL541_10635	PF09383	NIL domain
AL541_10640	PF13242	HAD-hyrolase-like
AL541_10645	PF00356	Bacterial regulatory proteins, lacI family
AL541_10645	PF13377	Periplasmic binding protein-like domain
AL541_10650	PF00367	phosphotransferase system, EIIB
AL541_10650	PF02378	Phosphotransferase system, EIIC
AL541_10655	PF00128	Alpha amylase, catalytic domain
AL541_10655	PF16657	AL541_10655
AL541_10665	PF00486	Transcriptional regulatory protein, C terminal
AL541_10670	PF02588	AL541_10670
AL541_10675	PF00464	Serine hydroxymethyltransferase
AL541_10680	PF04055	Radical SAM superfamily
AL541_10680	PF16881	AL541_10680
AL541_10685	PF03099	Biotin/lipoate A/B protein ligase family
AL541_10690	PF04359	Protein of unknown function (DUF493)
AL541_10695	PF00768	D-alanyl-D-alanine carboxypeptidase
AL541_10695	PF07943	Penicillin-binding protein 5, C-terminal domain
AL541_10700	PF03330	Rare lipoprotein A (RlpA)-like double-psi beta-barrel
AL541_10700	PF05036	Sporulation related domain
AL541_10705	PF01098	AL541_10705
AL541_10710	PF00905	Penicillin binding protein transpeptidase domain
AL541_10710	PF03717	Penicillin-binding Protein dimerisation domain
AL541_10715	PF02590	Predicted SPOUT methyltransferase
AL541_10720	PF02410	Oligomerisation domain
AL541_10725	PF06144	DNA polymerase III, delta subunit
AL541_10725	PF14840	Processivity clamp loader gamma complex DNA pol III C-term
AL541_10730	PF04390	Lipopolysaccharide-assembly
AL541_10735	PF00133	tRNA synthetases class I (I, L, M and V)
AL541_10735	PF08264	Anticodon-binding domain of tRNA
AL541_10735	PF13603	Leucyl-tRNA synthetase, Domain 2
AL541_10740	PF07295	AL541_10740
AL541_10745	PF00795	Carbon-nitrogen hydrolase
AL541_10750	PF00571	CBS domain
AL541_10750	PF03471	Transporter associated domain
AL541_10755	PF02130	Uncharacterized protein family UPF0054
AL541_10760	PF02562	PhoH-like protein
AL541_10765	PF00919	Uncharacterized protein family UPF0004
AL541_10765	PF01938	TRAM domain
AL541_10765	PF04055	Radical SAM superfamily
AL541_10775	PF01494	FAD binding domain
AL541_10885	PF01926	50S ribosome-binding GTPase
AL541_10885	PF06071	Protein of unknown function (DUF933)
AL541_10890	PF01195	Peptidyl-tRNA hydrolase
AL541_10895	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
AL541_10895	PF14572	Phosphoribosyl synthetase-associated domain
AL541_10900	PF00288	GHMP kinases N terminal domain
AL541_10900	PF08544	GHMP kinases C terminal
AL541_10905	PF03550	Outer membrane lipoprotein LolB
AL541_10910	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
AL541_10910	PF01488	Shikimate / quinate 5-dehydrogenase
AL541_10910	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
AL541_10915	PF00472	RF-1 domain
AL541_10915	PF03462	PCRF domain
AL541_10920	PF13847	Methyltransferase domain
AL541_10925	PF04247	AL541_10925
AL541_10930	PF13369	AL541_10930
AL541_10930	PF13371	Tetratricopeptide repeat
AL541_10935	PF00793	DAHP synthetase I family
AL541_10940	PF00149	Calcineurin-like phosphoesterase
AL541_10940	PF02872	5'-nucleotidase, C-terminal domain
AL541_10945	PF04073	Aminoacyl-tRNA editing domain
AL541_10950	PF00849	RNA pseudouridylate synthase
AL541_10950	PF01479	S4 domain
AL541_10955	PF01713	Smr domain
AL541_10960	PF11346	AL541_10960
AL541_10975	PF01963	AL541_10975
AL541_10980	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL541_10980	PF02838	Glycosyl hydrolase family 20, domain 2
AL541_10980	PF03173	Putative carbohydrate binding domain
AL541_10980	PF03174	Chitobiase/beta-hexosaminidase C-terminal domain
AL541_10985	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AL541_10990	PF04214	AL541_10990
AL541_10995	PF00122	E1-E2 ATPase
AL541_10995	PF00403	Heavy-metal-associated domain
AL541_10995	PF00702	haloacid dehalogenase-like hydrolase
AL541_11005	PF13609	Gram-negative porin
AL541_11010	PF09829	AL541_11010
AL541_11015	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL541_11020	PF00691	OmpA family
AL541_11020	PF01389	OmpA-like transmembrane domain
AL541_11035	PF16538	AL541_11035
AL541_11035	PF16539	AL541_11035
AL541_11035	PF16548	AL541_11035
AL541_11045	PF02169	LPP20 lipoprotein
AL541_11050	PF05130	FlgN protein
AL541_11055	PF04316	Anti-sigma-28 factor, FlgM
AL541_11060	PF13144	SAF-like
AL541_11065	PF00072	Response regulator receiver domain
AL541_11065	PF01584	CheW-like domain
AL541_11070	PF01739	CheR methyltransferase, SAM binding domain
AL541_11070	PF03705	CheR methyltransferase, all-alpha domain
AL541_11080	PF00460	Flagella basal body rod protein
AL541_11080	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_11085	PF03963	AL541_11085
AL541_11085	PF13860	FlgD Ig-like domain
AL541_11085	PF13861	FlgD Tudor-like domain
AL541_11090	PF00460	Flagella basal body rod protein
AL541_11090	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_11090	PF07559	Flagellar basal body protein FlaE
AL541_11095	PF00460	Flagella basal body rod protein
AL541_11095	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_11100	PF00460	Flagella basal body rod protein
AL541_11100	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_11105	PF02107	AL541_11105
AL541_11110	PF02119	AL541_11110
AL541_11115	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL541_11115	PF10135	AL541_11115
AL541_11120	PF06429	Flagellar basal body rod FlgEFG protein C-terminal
AL541_11125	PF00669	Bacterial flagellin N-terminal helical region
AL541_11130	PF00669	Bacterial flagellin N-terminal helical region
AL541_11130	PF00700	Bacterial flagellin C-terminal helical region
AL541_11130	PF07196	Flagellin hook IN motif
AL541_11140	PF00669	Bacterial flagellin N-terminal helical region
AL541_11140	PF00700	Bacterial flagellin C-terminal helical region
AL541_11140	PF07196	Flagellin hook IN motif
AL541_11155	PF00358	phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1
AL541_11160	PF00391	PEP-utilising enzyme, mobile domain
AL541_11160	PF02896	PEP-utilising enzyme, TIM barrel domain
AL541_11160	PF05524	PEP-utilising enzyme, N-terminal
AL541_11165	PF00381	PTS HPr component phosphorylation site
AL541_11175	PF00291	Pyridoxal-phosphate dependent enzyme
AL541_11180	PF07264	Etoposide-induced protein 2
AL541_11185	PF04354	ZipA, C-terminal FtsZ-binding domain
AL541_11190	PF00533	BRCA1 C Terminus (BRCT) domain
AL541_11190	PF01653	NAD-dependent DNA ligase adenylation domain
AL541_11190	PF03119	NAD-dependent DNA ligase C4 zinc finger domain
AL541_11190	PF03120	NAD-dependent DNA ligase OB-fold domain
AL541_11190	PF12826	Helix-hairpin-helix motif
AL541_11190	PF14520	Helix-hairpin-helix domain
AL541_11210	PF01957	NfeD-like C-terminal, partner-binding
AL541_11215	PF01145	SPFH domain / Band 7 family
AL541_11215	PF16200	AL541_11215
AL541_11220	PF00085	Thioredoxin
AL541_11220	PF14559	Tetratricopeptide repeat
AL541_11220	PF14561	Tetratricopeptide repeat
AL541_11230	PF00106	short chain dehydrogenase
AL541_11235	PF01370	NAD dependent epimerase/dehydratase family
AL541_11235	PF08338	Domain of unknown function (DUF1731)
AL541_11240	PF07556	AL541_11240
AL541_11245	PF07556	AL541_11245
AL541_11255	PF00571	CBS domain
AL541_11265	PF12850	Calcineurin-like phosphoesterase superfamily domain
AL541_11270	PF10262	Rdx family
AL541_11275	PF01925	AL541_11275
AL541_11280	PF17323	AL541_11280
AL541_11285	PF00486	Transcriptional regulatory protein, C terminal
AL541_11290	PF00183	Hsp90 protein
AL541_11290	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_11295	PF00406	Adenylate kinase
AL541_11295	PF05191	Adenylate kinase, active site lid
AL541_11300	PF00762	Ferrochelatase
AL541_11305	PF00854	POT family
AL541_11310	PF02357	Transcription termination factor nusG
AL541_11315	PF00733	Asparagine synthase
AL541_11315	PF13537	Glutamine amidotransferase domain
AL541_11320	PF00999	Sodium/hydrogen exchanger family
AL541_11320	PF02254	TrkA-N domain
AL541_11325	PF00480	ROK family
AL541_11330	PF01979	Amidohydrolase family
AL541_11340	PF00367	phosphotransferase system, EIIB
AL541_11340	PF02378	Phosphotransferase system, EIIC
AL541_11345	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL541_11345	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
AL541_11350	PF01475	Ferric uptake regulator family
AL541_11355	PF14539	Domain of unknown function (DUF4442)
AL541_11360	PF00258	Flavodoxin
AL541_11365	PF10981	AL541_11365
AL541_11370	PF12697	Alpha/beta hydrolase family
AL541_11375	PF03925	SeqA protein
AL541_11375	PF17206	AL541_11375
AL541_11380	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL541_11380	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL541_11380	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL541_11380	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL541_11385	PF08907	AL541_11385
AL541_11390	PF01784	NIF3 (NGG1p interacting factor 3)
AL541_11395	PF00285	Citrate synthase
AL541_11400	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
AL541_11410	PF00890	FAD binding domain
AL541_11410	PF02910	Fumarate reductase flavoprotein C-term
AL541_11415	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL541_11415	PF13534	4Fe-4S dicluster domain
AL541_11420	PF00676	Dehydrogenase E1 component
AL541_11420	PF02779	Transketolase, pyrimidine binding domain
AL541_11420	PF16078	AL541_11420
AL541_11420	PF16870	AL541_11420
AL541_11425	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL541_11425	PF00364	Biotin-requiring enzyme
AL541_11425	PF02817	e3 binding domain
AL541_11430	PF00549	CoA-ligase
AL541_11430	PF08442	ATP-grasp domain
AL541_11435	PF00549	CoA-ligase
AL541_11435	PF02629	CoA binding domain
AL541_11440	PF00950	AL541_11440
AL541_11445	PF00005	ABC transporter
AL541_11450	PF01297	Periplasmic solute binding protein family
AL541_11455	PF12833	Helix-turn-helix domain
AL541_11460	PF04023	FeoA domain
AL541_11465	PF02421	Ferrous iron transport protein B
AL541_11465	PF07664	AL541_11465
AL541_11465	PF07670	Nucleoside recognition
AL541_11470	PF09012	FeoC like transcriptional regulator
AL541_11475	PF03350	AL541_11475
AL541_11480	PF01230	HIT domain
AL541_11485	PF00750	tRNA synthetases class I (R)
AL541_11485	PF03485	Arginyl tRNA synthetase N terminal domain
AL541_11485	PF05746	DALR anticodon binding domain
AL541_11495	PF06185	YecM protein
AL541_11500	PF00551	Formyl transferase
AL541_11500	PF01842	ACT domain
AL541_11505	PF04851	Type III restriction enzyme, res subunit
AL541_11505	PF13307	Helicase C-terminal domain
AL541_11510	PF00814	Glycoprotease family
AL541_11520	PF03843	AL541_11520
AL541_11525	PF00561	alpha/beta hydrolase fold
AL541_11530	PF00501	AMP-binding enzyme
AL541_11530	PF13193	AMP-binding enzyme C-terminal domain
AL541_11535	PF00570	HRDC domain
AL541_11535	PF01612	3'-5' exonuclease
AL541_11540	PF03776	Septum formation topological specificity factor MinE
AL541_11545	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AL541_11550	PF03775	Septum formation inhibitor MinC, C-terminal domain
AL541_11550	PF05209	Septum formation inhibitor MinC, N-terminal domain
AL541_11555	PF05166	YcgL domain
AL541_11560	PF13406	Transglycosylase SLT domain
AL541_11565	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_11565	PF03466	LysR substrate binding domain
AL541_11570	PF01773	Na+ dependent nucleoside transporter N-terminus
AL541_11570	PF07662	Na+ dependent nucleoside transporter C-terminus
AL541_11570	PF07670	Nucleoside recognition
AL541_11575	PF00763	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
AL541_11575	PF02882	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
AL541_11585	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL541_11585	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL541_11590	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_11595	PF07977	FabA-like domain
AL541_11600	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL541_11600	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL541_11605	PF11659	AL541_11605
AL541_11610	PF03176	MMPL family
AL541_11615	PF03548	Outer membrane lipoprotein carrier protein LolA
AL541_11620	PF13279	Thioesterase-like superfamily
AL541_11625	PF00221	Aromatic amino acid lyase
AL541_11630	PF00535	Glycosyl transferase family 2
AL541_11630	PF03279	AL541_11630
AL541_11640	PF00501	AMP-binding enzyme
AL541_11640	PF13193	AMP-binding enzyme C-terminal domain
AL541_11645	PF04279	AL541_11645
AL541_11650	PF00550	Phosphopantetheine attachment site
AL541_11655	PF00550	Phosphopantetheine attachment site
AL541_11660	PF01553	Acyltransferase
AL541_11665	PF13723	AL541_11665
AL541_11675	PF00891	O-methyltransferase
AL541_11680	PF01494	FAD binding domain
AL541_11685	PF01464	Transglycosylase SLT domain
AL541_11690	PF00270	DEAD/DEAH box helicase
AL541_11690	PF00271	Helicase conserved C-terminal domain
AL541_11695	PF02080	TrkA-C domain
AL541_11695	PF02254	TrkA-N domain
AL541_11700	PF02386	Cation transport protein
AL541_11705	PF05547	AL541_11705
AL541_11715	PF02696	AL541_11715
AL541_11720	PF03480	Bacterial extracellular solute-binding protein, family 7
AL541_11725	PF04290	AL541_11725
AL541_11730	PF06808	AL541_11730
AL541_11740	PF00072	Response regulator receiver domain
AL541_11740	PF00158	Sigma-54 interaction domain
AL541_11740	PF02954	Bacterial regulatory protein, Fis family
AL541_11745	PF00512	His Kinase A (phospho-acceptor) domain
AL541_11745	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_11755	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL541_11755	PF05697	Bacterial trigger factor protein (TF)
AL541_11755	PF05698	Bacterial trigger factor protein (TF) C-terminus
AL541_11760	PF00574	Clp protease
AL541_11765	PF06689	ClpX C4-type zinc finger
AL541_11765	PF07724	AAA domain (Cdc48 subfamily)
AL541_11765	PF10431	C-terminal, D2-small domain, of ClpB protein
AL541_11770	PF00004	ATPase family associated with various cellular activities (AAA)
AL541_11770	PF02190	ATP-dependent protease La (LON) domain
AL541_11770	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL541_11775	PF00216	Bacterial DNA-binding protein
AL541_11780	PF13616	PPIC-type PPIASE domain
AL541_11780	PF13624	SurA N-terminal domain
AL541_11785	PF12836	Helix-hairpin-helix motif
AL541_11790	PF01694	Rhomboid family
AL541_11795	PF03942	AL541_11795
AL541_11800	PF01966	HD domain
AL541_11800	PF13286	Phosphohydrolase-associated domain
AL541_11805	PF13023	HD domain
AL541_11810	PF00155	Aminotransferase class I and II
AL541_11815	PF00425	chorismate binding enzyme
AL541_11820	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL541_11820	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL541_11820	PF16582	AL541_11820
AL541_11825	PF12697	Alpha/beta hydrolase family
AL541_11830	PF00378	Enoyl-CoA hydratase/isomerase family
AL541_11835	PF13378	Enolase C-terminal domain-like
AL541_11840	PF00501	AMP-binding enzyme
AL541_11840	PF13193	AMP-binding enzyme C-terminal domain
AL541_11850	PF03601	AL541_11850
AL541_11855	PF01553	Acyltransferase
AL541_11855	PF07690	Major Facilitator Superfamily
AL541_11860	PF13305	WHG domain
AL541_11865	PF04280	Tim44-like domain
AL541_11900	PF16576	AL541_11900
AL541_11905	PF00873	AcrB/AcrD/AcrF family
AL541_11910	PF13505	Outer membrane protein beta-barrel domain
AL541_11915	PF06844	Protein of unknown function (DUF1244)
AL541_11920	PF00291	Pyridoxal-phosphate dependent enzyme
AL541_11925	PF01037	AsnC family
AL541_11925	PF13412	Winged helix-turn-helix DNA-binding
AL541_11935	PF13622	Thioesterase-like superfamily
AL541_11940	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AL541_11945	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL541_11955	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_11955	PF00990	GGDEF domain
AL541_11965	PF00588	SpoU rRNA Methylase family
AL541_11970	PF00571	CBS domain
AL541_11975	PF00122	E1-E2 ATPase
AL541_11975	PF00403	Heavy-metal-associated domain
AL541_11975	PF00702	haloacid dehalogenase-like hydrolase
AL541_11980	PF01048	Phosphorylase superfamily
AL541_11985	PF09002	Domain of unknown function (DUF1887)
AL541_11990	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_11995	PF01230	HIT domain
AL541_12005	PF07233	Protein of unknown function (DUF1425)
AL541_12010	PF13036	Protein of unknown function (DUF3897)
AL541_12015	PF01636	Phosphotransferase enzyme family
AL541_12020	PF05728	Uncharacterised protein family (UPF0227)
AL541_12025	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_12030	PF13302	Acetyltransferase (GNAT) domain
AL541_12035	PF10972	AL541_12035
AL541_12040	PF00270	DEAD/DEAH box helicase
AL541_12040	PF00271	Helicase conserved C-terminal domain
AL541_12040	PF02559	CarD-like/TRCF domain
AL541_12040	PF03461	TRCF domain
AL541_12050	PF02687	AL541_12050
AL541_12050	PF12704	MacB-like periplasmic core domain
AL541_12055	PF00005	ABC transporter
AL541_12060	PF02687	AL541_12060
AL541_12060	PF12704	MacB-like periplasmic core domain
AL541_12065	PF09835	AL541_12065
AL541_12070	PF00753	Metallo-beta-lactamase superfamily
AL541_12070	PF03772	AL541_12070
AL541_12075	PF01501	Glycosyl transferase family 8
AL541_12080	PF00005	ABC transporter
AL541_12080	PF00664	ABC transporter transmembrane region
AL541_12085	PF02606	Tetraacyldisaccharide-1-P 4'-kinase
AL541_12090	PF03966	Trm112p-like protein
AL541_12095	PF02348	Cytidylyltransferase
AL541_12100	PF04293	AL541_12100
AL541_12105	PF04285	AL541_12105
AL541_12110	PF06798	AL541_12110
AL541_12110	PF08298	PrkA AAA domain
AL541_12120	PF03887	YfbU domain
AL541_12125	PF01891	Cobalt uptake substrate-specific transmembrane region
AL541_12130	PF04055	Radical SAM superfamily
AL541_12130	PF13353	4Fe-4S single cluster domain
AL541_12135	PF09982	Uncharacterized protein conserved in bacteria (DUF2219)
AL541_12140	PF01228	Glycine radical
AL541_12140	PF02901	Pyruvate formate lyase
AL541_12145	PF11840	AL541_12145
AL541_12160	PF00005	ABC transporter
AL541_12165	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_12170	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_12175	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_12180	PF17291	AL541_12180
AL541_12185	PF03372	Endonuclease/Exonuclease/phosphatase family
AL541_12190	PF10689	AL541_12190
AL541_12195	PF07445	Primosomal replication protein priB and priC
AL541_12200	PF01925	AL541_12200
AL541_12205	PF04851	Type III restriction enzyme, res subunit
AL541_12205	PF13307	Helicase C-terminal domain
AL541_12210	PF13609	Gram-negative porin
AL541_12215	PF09829	AL541_12215
AL541_12220	PF00849	RNA pseudouridylate synthase
AL541_12225	PF03971	Monomeric isocitrate dehydrogenase
AL541_12230	PF00313	'Cold-shock' DNA-binding domain
AL541_12235	PF02617	ATP-dependent Clp protease adaptor protein ClpS
AL541_12240	PF00004	ATPase family associated with various cellular activities (AAA)
AL541_12240	PF02861	Clp amino terminal domain
AL541_12240	PF07724	AAA domain (Cdc48 subfamily)
AL541_12240	PF10431	C-terminal, D2-small domain, of ClpB protein
AL541_12245	PF01176	Translation initiation factor 1A / IF-1
AL541_12250	PF04376	AL541_12250
AL541_12250	PF04377	AL541_12250
AL541_12255	PF03588	Leucyl/phenylalanyl-tRNA protein transferase
AL541_12260	PF05433	AL541_12260
AL541_12265	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL541_12270	PF10692	Protein of unknown function (DUF2498)
AL541_12275	PF01131	DNA topoisomerase
AL541_12275	PF01396	AL541_12275
AL541_12275	PF01751	Toprim domain
AL541_12275	PF08272	Topoisomerase I zinc-ribbon-like
AL541_12280	PF00483	Nucleotidyl transferase
AL541_12285	PF00534	Glycosyl transferases group 1
AL541_12285	PF08323	Starch synthase catalytic domain
AL541_12290	PF00561	alpha/beta hydrolase fold
AL541_12295	PF09413	Domain of unknown function (DUF2007)
AL541_12300	PF09335	AL541_12300
AL541_12305	PF04993	TfoX N-terminal domain
AL541_12305	PF04994	TfoX C-terminal domain
AL541_12310	PF00356	Bacterial regulatory proteins, lacI family
AL541_12310	PF13377	Periplasmic binding protein-like domain
AL541_12315	PF02613	Nitrate reductase delta subunit
AL541_12320	PF00072	Response regulator receiver domain
AL541_12320	PF00486	Transcriptional regulatory protein, C terminal
AL541_12325	PF02698	DUF218 domain
AL541_12330	PF08241	Methyltransferase domain
AL541_12335	PF03882	KicB killing factor
AL541_12335	PF17192	AL541_12335
AL541_12335	PF17193	AL541_12335
AL541_12340	PF04288	MukE-like family
AL541_12345	PF04310	MukB N-terminal
AL541_12345	PF13558	Putative exonuclease SbcCD, C subunit
AL541_12345	PF16330	AL541_12345
AL541_12355	PF14397	AL541_12355
AL541_12360	PF14400	AL541_12360
AL541_12360	PF14402	AL541_12360
AL541_12365	PF05618	Putative ATP-dependant zinc protease
AL541_12375	PF08003	Protein of unknown function (DUF1698)
AL541_12380	PF13649	Methyltransferase domain
AL541_12385	PF01904	Protein of unknown function DUF72
AL541_12390	PF00152	tRNA synthetases class II (D, K and N)
AL541_12390	PF01336	OB-fold nucleic acid binding domain
AL541_12390	PF02938	GAD domain
AL541_12395	PF01709	Transcriptional regulator
AL541_12400	PF02075	Crossover junction endodeoxyribonuclease RuvC
AL541_12405	PF01330	RuvA N terminal domain
AL541_12405	PF07499	RuvA, C-terminal domain
AL541_12405	PF14520	Helix-hairpin-helix domain
AL541_12410	PF05491	Holliday junction DNA helicase ruvB C-terminus
AL541_12410	PF05496	Holliday junction DNA helicase ruvB N-terminus
AL541_12415	PF01654	AL541_12415
AL541_12420	PF02322	AL541_12420
AL541_12425	PF08173	AL541_12425
AL541_12430	PF09600	AL541_12430
AL541_12435	PF03061	Thioesterase superfamily
AL541_12440	PF01618	AL541_12440
AL541_12445	PF02472	Biopolymer transport protein ExbD/TolR
AL541_12450	PF06519	TolA C-terminal
AL541_12455	PF04052	TolB amino-terminal domain
AL541_12455	PF07676	WD40-like Beta Propeller Repeat
AL541_12460	PF00691	OmpA family
AL541_12465	PF13174	Tetratricopeptide repeat
AL541_12465	PF13432	Tetratricopeptide repeat
AL541_12465	PF16331	AL541_12465
AL541_12470	PF02445	Quinolinate synthetase A protein
AL541_12475	PF07885	Ion channel
AL541_12480	PF03994	AL541_12480
AL541_12485	PF06693	AL541_12485
AL541_12490	PF03738	Glutathionylspermidine synthase preATP-grasp
AL541_12495	PF03695	Uncharacterised protein family (UPF0149)
AL541_12500	PF00072	Response regulator receiver domain
AL541_12500	PF00512	His Kinase A (phospho-acceptor) domain
AL541_12500	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_12505	PF06610	AL541_12505
AL541_12515	PF02322	AL541_12515
AL541_12520	PF01654	AL541_12520
AL541_12530	PF11557	AL541_12530
AL541_12535	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_12535	PF00672	HAMP domain
AL541_12540	PF16576	AL541_12540
AL541_12545	PF00873	AcrB/AcrD/AcrF family
AL541_12550	PF01047	MarR family
AL541_12555	PF03547	AL541_12555
AL541_12560	PF00579	tRNA synthetases class I (W and Y)
AL541_12570	PF03372	Endonuclease/Exonuclease/phosphatase family
AL541_12580	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_12580	PF12729	AL541_12580
AL541_12585	PF06175	tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)
AL541_12595	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_12595	PF03466	LysR substrate binding domain
AL541_12600	PF13679	AL541_12600
AL541_12605	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL541_12605	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL541_12610	PF01037	AsnC family
AL541_12610	PF13412	Winged helix-turn-helix DNA-binding
AL541_12615	PF01580	FtsK/SpoIIIE family
AL541_12615	PF09397	Ftsk gamma domain
AL541_12615	PF13491	AL541_12615
AL541_12620	PF03548	Outer membrane lipoprotein carrier protein LolA
AL541_12625	PF00004	ATPase family associated with various cellular activities (AAA)
AL541_12625	PF12002	MgsA AAA+ ATPase C terminal
AL541_12625	PF16193	AL541_12625
AL541_12630	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL541_12630	PF02403	Seryl-tRNA synthetase N-terminal domain
AL541_12645	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL541_12650	PF00202	Aminotransferase class-III
AL541_12655	PF04055	Radical SAM superfamily
AL541_12655	PF06968	Biotin and Thiamin Synthesis associated domain
AL541_12660	PF00155	Aminotransferase class I and II
AL541_12665	PF08241	Methyltransferase domain
AL541_12670	PF13500	AAA domain
AL541_12680	PF01435	Peptidase family M48
AL541_12685	PF12680	SnoaL-like domain
AL541_12690	PF00106	short chain dehydrogenase
AL541_12695	PF01593	Flavin containing amine oxidoreductase
AL541_12700	PF07103	AL541_12700
AL541_12705	PF02353	Mycolic acid cyclopropane synthetase
AL541_12710	PF11086	AL541_12710
AL541_12715	PF16036	AL541_12715
AL541_12720	PF12915	AL541_12720
AL541_12725	PF00206	Lyase
AL541_12725	PF08328	Adenylosuccinate lyase C-terminal
AL541_12730	PF04356	Protein of unknown function (DUF489)
AL541_12735	PF03054	tRNA methyl transferase
AL541_12745	PF00294	pfkB family carbohydrate kinase
AL541_12750	PF00816	H-NS histone family
AL541_12755	PF03553	AL541_12755
AL541_12760	PF01634	ATP phosphoribosyltransferase
AL541_12760	PF08029	HisG, C-terminal domain
AL541_12765	PF00815	Histidinol dehydrogenase
AL541_12770	PF00155	Aminotransferase class I and II
AL541_12775	PF00475	Imidazoleglycerol-phosphate dehydratase
AL541_12775	PF08645	Polynucleotide kinase 3 phosphatase
AL541_12780	PF00117	Glutamine amidotransferase class-I
AL541_12785	PF00977	Histidine biosynthesis protein
AL541_12790	PF00977	Histidine biosynthesis protein
AL541_12795	PF01502	Phosphoribosyl-AMP cyclohydrolase
AL541_12795	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AL541_12800	PF02810	SEC-C motif
AL541_12805	PF00563	EAL domain
AL541_12805	PF08668	HDOD domain
AL541_12810	PF12850	Calcineurin-like phosphoesterase superfamily domain
AL541_12815	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL541_12820	PF01406	tRNA synthetases class I (C) catalytic domain
AL541_12820	PF09190	DALR domain
AL541_12825	PF00265	Thymidine kinase
AL541_12830	PF02698	DUF218 domain
AL541_12835	PF01370	NAD dependent epimerase/dehydratase family
AL541_12840	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_12840	PF03466	LysR substrate binding domain
AL541_12845	PF05232	AL541_12845
AL541_12850	PF06146	AL541_12850
AL541_12855	PF01226	Formate/nitrite transporter
AL541_12865	PF03649	AL541_12865
AL541_12870	PF06796	AL541_12870
AL541_12875	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL541_12880	PF00384	Molybdopterin oxidoreductase
AL541_12880	PF01568	Molydopterin dinucleotide binding domain
AL541_12885	PF02065	Melibiase
AL541_12890	PF11449	AL541_12890
AL541_12895	PF01368	DHH family
AL541_12895	PF02833	DHHA2 domain
AL541_12900	PF11042	AL541_12900
AL541_12905	PF00005	ABC transporter
AL541_12910	PF00005	ABC transporter
AL541_12910	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_12915	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_12915	PF12911	AL541_12915
AL541_12920	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_12925	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_12930	PF00158	Sigma-54 interaction domain
AL541_12930	PF02954	Bacterial regulatory protein, Fis family
AL541_12935	PF04012	AL541_12935
AL541_12940	PF06667	AL541_12940
AL541_12945	PF04024	AL541_12945
AL541_12950	PF16576	AL541_12950
AL541_12955	PF13437	HlyD family secretion protein
AL541_12955	PF13533	Biotin-lipoyl like
AL541_12960	PF00873	AcrB/AcrD/AcrF family
AL541_12965	PF03352	Methyladenine glycosylase
AL541_12970	PF03280	Proteobacterial lipase chaperone protein
AL541_12975	PF00561	alpha/beta hydrolase fold
AL541_12980	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL541_12985	PF13091	PLD-like domain
AL541_12985	PF13396	AL541_12985
AL541_12990	PF00209	Sodium:neurotransmitter symporter family
AL541_12995	PF00849	RNA pseudouridylate synthase
AL541_13000	PF10672	S-adenosylmethionine-dependent methyltransferase
AL541_13005	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL541_13005	PF00175	Oxidoreductase NAD-binding domain
AL541_13005	PF00970	Oxidoreductase FAD-binding domain
AL541_13010	PF03063	Prismane/CO dehydrogenase family
AL541_13015	PF00158	Sigma-54 interaction domain
AL541_13015	PF02954	Bacterial regulatory protein, Fis family
AL541_13025	PF05433	AL541_13025
AL541_13030	PF01066	CDP-alcohol phosphatidyltransferase
AL541_13035	PF00005	ABC transporter
AL541_13045	PF13416	Bacterial extracellular solute-binding protein
AL541_13050	PF03724	META domain
AL541_13055	PF06945	AL541_13055
AL541_13070	PF00149	Calcineurin-like phosphoesterase
AL541_13070	PF02872	5'-nucleotidase, C-terminal domain
AL541_13075	PF00583	Acetyltransferase (GNAT) family
AL541_13080	PF01386	Ribosomal L25p family
AL541_13085	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_13090	PF00072	Response regulator receiver domain
AL541_13090	PF00486	Transcriptional regulatory protein, C terminal
AL541_13100	PF00271	Helicase conserved C-terminal domain
AL541_13100	PF04851	Type III restriction enzyme, res subunit
AL541_13105	PF00849	RNA pseudouridylate synthase
AL541_13105	PF01479	S4 domain
AL541_13115	PF07690	Major Facilitator Superfamily
AL541_13120	PF11140	AL541_13120
AL541_13125	PF11066	AL541_13125
AL541_13125	PF13460	NADH(P)-binding
AL541_13130	PF01554	MatE
AL541_13135	PF00005	ABC transporter
AL541_13140	PF02687	AL541_13140
AL541_13145	PF07143	Hydroxyneurosporene synthase (CrtC)
AL541_13145	PF17186	AL541_13145
AL541_13150	PF06965	Na+/H+ antiporter 1
AL541_13160	PF00440	Bacterial regulatory proteins, tetR family
AL541_13165	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL541_13165	PF02770	Acyl-CoA dehydrogenase, middle domain
AL541_13165	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL541_13165	PF09317	AL541_13165
AL541_13170	PF07055	Enoyl reductase FAD binding domain
AL541_13170	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL541_13170	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL541_13175	PF02080	TrkA-C domain
AL541_13175	PF06826	AL541_13175
AL541_13180	PF00462	Glutaredoxin
AL541_13185	PF00465	Iron-containing alcohol dehydrogenase
AL541_13190	PF01380	SIS domain
AL541_13190	PF01418	Helix-turn-helix domain, rpiR family
AL541_13195	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL541_13205	PF03956	AL541_13205
AL541_13210	PF08668	HDOD domain
AL541_13225	PF04993	TfoX N-terminal domain
AL541_13225	PF04994	TfoX C-terminal domain
AL541_13235	PF00072	Response regulator receiver domain
AL541_13240	PF00027	Cyclic nucleotide-binding domain
AL541_13240	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_13245	PF06097	AL541_13245
AL541_13250	PF00266	Aminotransferase class-V
AL541_13255	PF00291	Pyridoxal-phosphate dependent enzyme
AL541_13260	PF00005	ABC transporter
AL541_13260	PF00664	ABC transporter transmembrane region
AL541_13265	PF00005	ABC transporter
AL541_13265	PF00664	ABC transporter transmembrane region
AL541_13270	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_13275	PF10014	2OG-Fe dioxygenase
AL541_13280	PF00266	Aminotransferase class-V
AL541_13285	PF10977	AL541_13285
AL541_13290	PF00990	GGDEF domain
AL541_13290	PF08547	Complex I intermediate-associated protein 30 (CIA30)
AL541_13295	PF00939	Sodium:sulfate symporter transmembrane region
AL541_13300	PF02698	DUF218 domain
AL541_13305	PF00390	Malic enzyme, N-terminal domain
AL541_13305	PF03949	Malic enzyme, NAD binding domain
AL541_13310	PF00270	DEAD/DEAH box helicase
AL541_13310	PF00271	Helicase conserved C-terminal domain
AL541_13310	PF04408	Helicase associated domain (HA2)
AL541_13320	PF01797	Transposase IS200 like
AL541_13325	PF09423	PhoD-like phosphatase
AL541_13325	PF16655	AL541_13325
AL541_13330	PF01259	SAICAR synthetase
AL541_13335	PF03846	Cell division inhibitor SulA
AL541_13350	PF00691	OmpA family
AL541_13350	PF13488	AL541_13350
AL541_13355	PF10979	AL541_13355
AL541_13360	PF11813	AL541_13360
AL541_13365	PF01565	FAD binding domain
AL541_13365	PF02913	FAD linked oxidases, C-terminal domain
AL541_13365	PF13183	4Fe-4S dicluster domain
AL541_13370	PF04191	Phospholipid methyltransferase
AL541_13375	PF12119	AL541_13375
AL541_13380	PF00221	Aromatic amino acid lyase
AL541_13385	PF01175	Urocanase
AL541_13385	PF17391	AL541_13385
AL541_13385	PF17392	AL541_13385
AL541_13390	PF00491	Arginase family
AL541_13395	PF01979	Amidohydrolase family
AL541_13400	PF00392	Bacterial regulatory proteins, gntR family
AL541_13400	PF07702	UTRA domain
AL541_13405	PF07070	AL541_13405
AL541_13410	PF11383	AL541_13410
AL541_13415	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL541_13415	PF02824	TGS domain
AL541_13415	PF03129	Anticodon binding domain
AL541_13415	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL541_13420	PF00707	Translation initiation factor IF-3, C-terminal domain
AL541_13420	PF05198	Translation initiation factor IF-3, N-terminal domain
AL541_13425	PF01632	Ribosomal protein L35
AL541_13430	PF00453	Ribosomal protein L20
AL541_13435	PF01906	Putative heavy-metal-binding
AL541_13440	PF13443	Cro/C1-type HTH DNA-binding domain
AL541_13450	PF00440	Bacterial regulatory proteins, tetR family
AL541_13455	PF03176	MMPL family
AL541_13460	PF17131	AL541_13460
AL541_13470	PF01409	tRNA synthetases class II core domain (F)
AL541_13470	PF02912	Aminoacyl tRNA synthetase class II, N-terminal domain
AL541_13475	PF01588	Putative tRNA binding domain
AL541_13475	PF03147	Ferredoxin-fold anticodon binding domain
AL541_13475	PF03483	B3/4 domain
AL541_13475	PF03484	tRNA synthetase B5 domain
AL541_13480	PF03547	AL541_13480
AL541_13485	PF00216	Bacterial DNA-binding protein
AL541_13495	PF05724	Thiopurine S-methyltransferase (TPMT)
AL541_13500	PF02222	ATP-grasp domain
AL541_13505	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL541_13505	PF08211	Cytidine and deoxycytidylate deaminase zinc-binding region
AL541_13510	PF04172	AL541_13510
AL541_13515	PF03788	AL541_13515
AL541_13520	PF00929	Exonuclease
AL541_13520	PF08411	Exonuclease C-terminal
AL541_13525	PF00375	Sodium:dicarboxylate symporter family
AL541_13530	PF08732	AL541_13530
AL541_13535	PF02277	Phosphoribosyltransferase
AL541_13540	PF02654	AL541_13540
AL541_13545	PF02283	Cobinamide kinase / cobinamide phosphate guanyltransferase
AL541_13550	PF00300	Histidine phosphatase superfamily (branch 1)
AL541_13555	PF01432	Peptidase family M3
AL541_13555	PF08439	Oligopeptidase F
AL541_13560	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL541_13565	PF01032	FecCD transport family
AL541_13570	PF00005	ABC transporter
AL541_13575	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase
AL541_13580	PF07209	AL541_13580
AL541_13585	PF07690	Major Facilitator Superfamily
AL541_13590	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_13590	PF03466	LysR substrate binding domain
AL541_13595	PF00462	Glutaredoxin
AL541_13600	PF01863	Protein of unknown function DUF45
AL541_13605	PF05971	Protein of unknown function (DUF890)
AL541_13615	PF03572	Peptidase family S41
AL541_13625	PF00392	Bacterial regulatory proteins, gntR family
AL541_13625	PF07729	FCD domain
AL541_13630	PF00171	Aldehyde dehydrogenase family
AL541_13635	PF05544	Proline racemase
AL541_13640	PF01266	FAD dependent oxidoreductase
AL541_13645	PF13416	Bacterial extracellular solute-binding protein
AL541_13650	PF02423	Ornithine cyclodeaminase/mu-crystallin family
AL541_13655	PF00701	Dihydrodipicolinate synthetase family
AL541_13660	PF00005	ABC transporter
AL541_13660	PF08402	TOBE domain
AL541_13665	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_13670	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_13680	PF00801	PKD domain
AL541_13680	PF01752	Collagenase
AL541_13680	PF08453	Peptidase family M9 N-terminal
AL541_13685	PF00557	Metallopeptidase family M24
AL541_13685	PF01321	Creatinase/Prolidase N-terminal domain
AL541_13685	PF16188	AL541_13685
AL541_13685	PF16189	AL541_13685
AL541_13690	PF00005	ABC transporter
AL541_13690	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_13695	PF00005	ABC transporter
AL541_13695	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_13700	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_13700	PF12911	AL541_13700
AL541_13705	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_13710	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_13715	PF01546	Peptidase family M20/M25/M40
AL541_13715	PF07687	Peptidase dimerisation domain
AL541_13720	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_13720	PF14696	Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal
AL541_13725	PF04209	homogentisate 1,2-dioxygenase
AL541_13730	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL541_13735	PF13417	Glutathione S-transferase, N-terminal domain
AL541_13740	PF10881	AL541_13740
AL541_13825	PF14412	AL541_13825
AL541_13850	PF11665	AL541_13850
AL541_13890	PF08818	Domain of unknown function (DU1801)
AL541_13895	PF02694	AL541_13895
AL541_13905	PF14234	AL541_13905
AL541_13910	PF03553	AL541_13910
AL541_13915	PF00120	Glutamine synthetase, catalytic domain
AL541_13925	PF07722	Peptidase C26
AL541_13930	PF01381	Helix-turn-helix
AL541_13930	PF07883	Cupin domain
AL541_13935	PF00171	Aldehyde dehydrogenase family
AL541_13940	PF01266	FAD dependent oxidoreductase
AL541_13945	PF00795	Carbon-nitrogen hydrolase
AL541_13950	PF04371	Porphyromonas-type peptidyl-arginine deiminase
AL541_13955	PF00171	Aldehyde dehydrogenase family
AL541_13960	PF00202	Aminotransferase class-III
AL541_13965	PF00563	EAL domain
AL541_13970	PF00892	EamA-like transporter family
AL541_13975	PF01047	MarR family
AL541_13980	PF04237	YjbR
AL541_13985	PF06127	AL541_13985
AL541_14005	PF00072	Response regulator receiver domain
AL541_14005	PF00512	His Kinase A (phospho-acceptor) domain
AL541_14005	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_14010	PF00563	EAL domain
AL541_14010	PF00990	GGDEF domain
AL541_14015	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AL541_14020	PF13431	Tetratricopeptide repeat
AL541_14025	PF04204	Homoserine O-succinyltransferase
AL541_14035	PF00893	Small Multidrug Resistance protein
AL541_14040	PF03279	AL541_14040
AL541_14045	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
AL541_14050	PF00271	Helicase conserved C-terminal domain
AL541_14050	PF04851	Type III restriction enzyme, res subunit
AL541_14055	PF12128	AL541_14055
AL541_14075	PF13280	AL541_14075
AL541_14080	PF00239	Resolvase, N terminal domain
AL541_14080	PF07508	Recombinase
AL541_14085	PF04851	Type III restriction enzyme, res subunit
AL541_14110	PF13671	AAA domain
AL541_14120	PF01926	50S ribosome-binding GTPase
AL541_14125	PF04548	AIG1 family
AL541_14135	PF00816	H-NS histone family
AL541_14140	PF05277	AL541_14140
AL541_14155	PF08774	VRR-NUC domain
AL541_14170	PF03235	AL541_14170
AL541_14175	PF03235	AL541_14175
AL541_14175	PF07510	AL541_14175
AL541_14180	PF09509	AL541_14180
AL541_14185	PF13175	AAA ATPase domain
AL541_14190	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)
AL541_14195	PF01381	Helix-turn-helix
AL541_14205	PF03432	AL541_14205
AL541_14215	PF00990	GGDEF domain
AL541_14220	PF13280	AL541_14220
AL541_14235	PF01935	Domain of unknown function DUF87
AL541_14260	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
AL541_14265	PF01810	AL541_14265
AL541_14275	PF01235	AL541_14275
AL541_14300	PF00884	Sulfatase
AL541_14305	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL541_14310	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_14315	PF00005	ABC transporter
AL541_14315	PF00571	CBS domain
AL541_14320	PF00027	Cyclic nucleotide-binding domain
AL541_14320	PF00571	CBS domain
AL541_14320	PF03445	AL541_14320
AL541_14320	PF10335	AL541_14320
AL541_14325	PF00929	Exonuclease
AL541_14330	PF02028	BCCT family transporter
AL541_14335	PF00583	Acetyltransferase (GNAT) family
AL541_14340	PF00202	Aminotransferase class-III
AL541_14345	PF06339	AL541_14345
AL541_14350	PF00696	Amino acid kinase family
AL541_14355	PF00884	Sulfatase
AL541_14355	PF14707	C-terminal region of aryl-sulfatase
AL541_14360	PF13414	TPR repeat
AL541_14360	PF13432	Tetratricopeptide repeat
AL541_14360	PF13435	Cytochrome c554 and c-prime
AL541_14365	PF03781	Sulfatase-modifying factor enzyme 1
AL541_14370	PF04055	Radical SAM superfamily
AL541_14370	PF13186	Iron-sulfur cluster-binding domain
AL541_14380	PF12710	haloacid dehalogenase-like hydrolase
AL541_14385	PF00884	Sulfatase
AL541_14390	PF00884	Sulfatase
AL541_14405	PF13437	HlyD family secretion protein
AL541_14410	PF02321	Outer membrane efflux protein
AL541_14415	PF00691	OmpA family
AL541_14425	PF00455	AL541_14425
AL541_14425	PF08220	DeoR-like helix-turn-helix domain
AL541_14430	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL541_14430	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AL541_14435	PF03928	Domain of unknown function (DUF336)
AL541_14440	PF00990	GGDEF domain
AL541_14440	PF02743	Cache domain
AL541_14445	PF12570	AL541_14445
AL541_14455	PF13673	Acetyltransferase (GNAT) domain
AL541_14460	PF00939	Sodium:sulfate symporter transmembrane region
AL541_14465	PF00027	Cyclic nucleotide-binding domain
AL541_14465	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_14470	PF00072	Response regulator receiver domain
AL541_14475	PF00563	EAL domain
AL541_14475	PF00990	GGDEF domain
AL541_14475	PF08447	PAS fold
AL541_14480	PF01966	HD domain
AL541_14480	PF11871	AL541_14480
AL541_14485	PF01810	AL541_14485
AL541_14490	PF11230	AL541_14490
AL541_14495	PF04055	Radical SAM superfamily
AL541_14495	PF13353	4Fe-4S single cluster domain
AL541_14500	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_14500	PF03466	LysR substrate binding domain
AL541_14505	PF03741	AL541_14505
AL541_14510	PF13640	2OG-Fe(II) oxygenase superfamily
AL541_14515	PF01966	HD domain
AL541_14520	PF00465	Iron-containing alcohol dehydrogenase
AL541_14525	PF03222	Tryptophan/tyrosine permease family
AL541_14530	PF13487	HD domain
AL541_14540	PF00005	ABC transporter
AL541_14545	PF01497	Periplasmic binding protein
AL541_14550	PF01032	FecCD transport family
AL541_14555	PF00593	TonB dependent receptor
AL541_14555	PF07715	TonB-dependent Receptor Plug Domain
AL541_14565	PF00005	ABC transporter
AL541_14565	PF00664	ABC transporter transmembrane region
AL541_14570	PF00005	ABC transporter
AL541_14570	PF00664	ABC transporter transmembrane region
AL541_14575	PF07963	Prokaryotic N-terminal methylation motif
AL541_14580	PF03616	AL541_14580
AL541_14585	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_14585	PF03466	LysR substrate binding domain
AL541_14590	PF03992	Antibiotic biosynthesis monooxygenase
AL541_14595	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL541_14600	PF03352	Methyladenine glycosylase
AL541_14610	PF00012	Hsp70 protein
AL541_14610	PF12531	AL541_14610
AL541_14615	PF00012	Hsp70 protein
AL541_14620	PF10816	AL541_14620
AL541_14625	PF00990	GGDEF domain
AL541_14625	PF03924	CHASE domain
AL541_14630	PF00929	Exonuclease
AL541_14635	PF05099	Tellurite resistance protein TerB
AL541_14640	PF09423	PhoD-like phosphatase
AL541_14650	PF06629	AL541_14650
AL541_14660	PF02525	Flavodoxin-like fold
AL541_14665	PF00270	DEAD/DEAH box helicase
AL541_14665	PF00271	Helicase conserved C-terminal domain
AL541_14665	PF04408	Helicase associated domain (HA2)
AL541_14665	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
AL541_14665	PF11898	AL541_14665
AL541_14670	PF13505	Outer membrane protein beta-barrel domain
AL541_14675	PF13505	Outer membrane protein beta-barrel domain
AL541_14680	PF02028	BCCT family transporter
AL541_14685	PF13671	AAA domain
AL541_14690	PF02397	AL541_14690
AL541_14695	PF13641	Glycosyltransferase like family 2
AL541_14700	PF00534	Glycosyl transferases group 1
AL541_14700	PF13439	Glycosyltransferase Family 4
AL541_14710	PF13692	Glycosyl transferases group 1
AL541_14715	PF04932	AL541_14715
AL541_14720	PF01943	AL541_14720
AL541_14725	PF00534	Glycosyl transferases group 1
AL541_14730	PF00534	Glycosyl transferases group 1
AL541_14730	PF13439	Glycosyltransferase Family 4
AL541_14735	PF00534	Glycosyl transferases group 1
AL541_14735	PF13439	Glycosyltransferase Family 4
AL541_14740	PF00072	Response regulator receiver domain
AL541_14740	PF00158	Sigma-54 interaction domain
AL541_14740	PF02954	Bacterial regulatory protein, Fis family
AL541_14745	PF01627	Hpt domain
AL541_14755	PF02563	Polysaccharide biosynthesis/export protein
AL541_14755	PF10531	SLBB domain
AL541_14760	PF00691	OmpA family
AL541_14765	PF13466	STAS domain
AL541_14770	PF01068	ATP dependent DNA ligase domain
AL541_14770	PF14743	DNA ligase OB-like domain
AL541_14775	PF11279	AL541_14775
AL541_14780	PF01554	MatE
AL541_14785	PF00677	Lumazine binding domain
AL541_14790	PF14255	AL541_14790
AL541_14795	PF03881	Fructosamine kinase
AL541_14800	PF00072	Response regulator receiver domain
AL541_14805	PF00990	GGDEF domain
AL541_14810	PF12290	AL541_14810
AL541_14815	PF00877	NlpC/P60 family
AL541_14820	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_14825	PF00293	NUDIX domain
AL541_14840	PF04116	AL541_14840
AL541_14845	PF03942	AL541_14845
AL541_14850	PF00480	ROK family
AL541_14855	PF11173	AL541_14855
AL541_14860	PF00994	Probable molybdopterin binding domain
AL541_14860	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
AL541_14860	PF03453	MoeA N-terminal region (domain I and II)
AL541_14860	PF03454	MoeA C-terminal region (domain IV)
AL541_14865	PF12804	MobA-like NTP transferase domain
AL541_14870	PF00005	ABC transporter
AL541_14875	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_14880	PF12849	PBP superfamily domain
AL541_14885	PF00072	Response regulator receiver domain
AL541_14885	PF00158	Sigma-54 interaction domain
AL541_14885	PF02954	Bacterial regulatory protein, Fis family
AL541_14890	PF00512	His Kinase A (phospho-acceptor) domain
AL541_14890	PF00672	HAMP domain
AL541_14890	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_14890	PF17202	AL541_14890
AL541_14900	PF00005	ABC transporter
AL541_14900	PF12848	ABC transporter
AL541_14905	PF02634	FdhD/NarQ family
AL541_14910	PF11749	AL541_14910
AL541_14915	PF11748	AL541_14915
AL541_14920	PF00037	4Fe-4S binding domain
AL541_14920	PF12838	4Fe-4S dicluster domain
AL541_14925	PF02613	Nitrate reductase delta subunit
AL541_14935	PF00384	Molybdopterin oxidoreductase
AL541_14935	PF01568	Molydopterin dinucleotide binding domain
AL541_14935	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL541_14940	PF13247	4Fe-4S dicluster domain
AL541_14945	PF01292	Prokaryotic cytochrome b561
AL541_14955	PF03527	AL541_14955
AL541_14955	PF05593	AL541_14955
AL541_14960	PF15575	AL541_14960
AL541_14975	PF15575	AL541_14975
AL541_14985	PF15575	AL541_14985
AL541_15000	PF15575	AL541_15000
AL541_15010	PF15575	AL541_15010
AL541_15015	PF15575	AL541_15015
AL541_15025	PF15575	AL541_15025
AL541_15030	PF15575	AL541_15030
AL541_15040	PF15575	AL541_15040
AL541_15045	PF15575	AL541_15045
AL541_15055	PF15575	AL541_15055
AL541_15085	PF12796	Ankyrin repeats (3 copies)
AL541_15090	PF00909	Ammonium Transporter Family
AL541_15095	PF02146	Sir2 family
AL541_15100	PF13416	Bacterial extracellular solute-binding protein
AL541_15105	PF13416	Bacterial extracellular solute-binding protein
AL541_15110	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_15115	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_15120	PF00005	ABC transporter
AL541_15120	PF08402	TOBE domain
AL541_15130	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
AL541_15135	PF11205	AL541_15135
AL541_15140	PF01171	PP-loop family
AL541_15145	PF00582	Universal stress protein family
AL541_15150	PF00027	Cyclic nucleotide-binding domain
AL541_15150	PF13545	Crp-like helix-turn-helix domain
AL541_15155	PF13386	AL541_15155
AL541_15160	PF03597	AL541_15160
AL541_15165	PF00122	E1-E2 ATPase
AL541_15165	PF00403	Heavy-metal-associated domain
AL541_15165	PF00702	haloacid dehalogenase-like hydrolase
AL541_15165	PF12156	AL541_15165
AL541_15170	PF05751	AL541_15170
AL541_15175	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL541_15175	PF14715	N-terminal domain of cytochrome oxidase-cbb3, FixP
AL541_15180	PF05545	AL541_15180
AL541_15185	PF02433	Cytochrome C oxidase, mono-heme subunit/FixO
AL541_15190	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL541_15200	PF08495	AL541_15200
AL541_15200	PF10442	AL541_15200
AL541_15205	PF00072	Response regulator receiver domain
AL541_15205	PF00512	His Kinase A (phospho-acceptor) domain
AL541_15205	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_15210	PF14412	AL541_15210
AL541_15225	PF12321	AL541_15225
AL541_15230	PF06303	Organiser of macrodomain of Terminus of chromosome
AL541_15230	PF17414	AL541_15230
AL541_15235	PF05362	Lon protease (S16) C-terminal proteolytic domain
AL541_15235	PF13654	AAA domain
AL541_15240	PF07977	FabA-like domain
AL541_15245	PF04957	Ribosome modulation factor
AL541_15250	PF11949	AL541_15250
AL541_15255	PF00005	ABC transporter
AL541_15255	PF12848	ABC transporter
AL541_15255	PF16326	AL541_15255
AL541_15260	PF05768	Glutaredoxin-like domain (DUF836)
AL541_15265	PF01170	Putative RNA methylase family UPF0020
AL541_15265	PF02926	THUMP domain
AL541_15265	PF10672	S-adenosylmethionine-dependent methyltransferase
AL541_15270	PF07126	AL541_15270
AL541_15275	PF01180	Dihydroorotate dehydrogenase
AL541_15280	PF05088	AL541_15280
AL541_15285	PF11197	AL541_15285
AL541_15290	PF01433	Peptidase family M1
AL541_15290	PF11940	Domain of unknown function (DUF3458)
AL541_15290	PF17432	AL541_15290
AL541_15300	PF00595	PDZ domain (Also known as DHR or GLGF)
AL541_15300	PF03572	Peptidase family S41
AL541_15300	PF08180	AL541_15300
AL541_15300	PF11818	AL541_15300
AL541_15305	PF04352	ProQ/FINO family
AL541_15305	PF17516	AL541_15305
AL541_15310	PF13185	GAF domain
AL541_15315	PF00005	ABC transporter
AL541_15315	PF00664	ABC transporter transmembrane region
AL541_15320	PF04403	AL541_15320
AL541_15325	PF02470	AL541_15325
AL541_15330	PF01189	NOL1/NOP2/sun family
AL541_15330	PF13636	pre-rRNA processing and ribosome biogenesis
AL541_15330	PF17125	AL541_15330
AL541_15335	PF13509	S1 domain
AL541_15345	PF14539	Domain of unknown function (DUF4442)
AL541_15350	PF00793	DAHP synthetase I family
AL541_15355	PF04461	Protein of unknown function (DUF520)
AL541_15360	PF10414	Sirohaem synthase dimerisation region
AL541_15360	PF13241	Putative NAD(P)-binding
AL541_15360	PF14824	Sirohaem biosynthesis protein central
AL541_15370	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_15375	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_15380	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_15385	PF00005	ABC transporter
AL541_15390	PF01027	Inhibitor of apoptosis-promoting Bax1
AL541_15400	PF04358	DsrC like protein
AL541_15405	PF00708	Acylphosphatase
AL541_15410	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_15415	PF10672	S-adenosylmethionine-dependent methyltransferase
AL541_15425	PF02321	Outer membrane efflux protein
AL541_15430	PF00691	OmpA family
AL541_15435	PF00028	Cadherin domain
AL541_15435	PF03160	Calx-beta domain
AL541_15435	PF13519	von Willebrand factor type A domain
AL541_15450	PF02321	Outer membrane efflux protein
AL541_15455	PF00691	OmpA family
AL541_15460	PF11042	AL541_15460
AL541_15465	PF00990	GGDEF domain
AL541_15465	PF13424	Tetratricopeptide repeat
AL541_15470	PF01614	Bacterial transcriptional regulator
AL541_15470	PF09339	IclR helix-turn-helix domain
AL541_15475	PF00106	short chain dehydrogenase
AL541_15480	PF00248	Aldo/keto reductase family
AL541_15485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_15485	PF03466	LysR substrate binding domain
AL541_15490	PF00296	Luciferase-like monooxygenase
AL541_15495	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_15495	PF03466	LysR substrate binding domain
AL541_15500	PF07690	Major Facilitator Superfamily
AL541_15505	PF00440	Bacterial regulatory proteins, tetR family
AL541_15510	PF00107	Zinc-binding dehydrogenase
AL541_15510	PF08240	Alcohol dehydrogenase GroES-like domain
AL541_15515	PF01965	DJ-1/PfpI family
AL541_15515	PF12833	Helix-turn-helix domain
AL541_15520	PF00857	Isochorismatase family
AL541_15525	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_15530	PF03773	AL541_15530
AL541_15535	PF00107	Zinc-binding dehydrogenase
AL541_15535	PF08240	Alcohol dehydrogenase GroES-like domain
AL541_15540	PF02574	Homocysteine S-methyltransferase
AL541_15545	PF00005	ABC transporter
AL541_15550	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_15555	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_15560	PF11777	AL541_15560
AL541_15565	PF00267	Gram-negative porin
AL541_15570	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_15570	PF03466	LysR substrate binding domain
AL541_15575	PF16576	AL541_15575
AL541_15580	PF00873	AcrB/AcrD/AcrF family
AL541_15585	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_15585	PF03466	LysR substrate binding domain
AL541_15595	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_15595	PF03466	LysR substrate binding domain
AL541_15600	PF01810	AL541_15600
AL541_15605	PF12844	Helix-turn-helix domain
AL541_15610	PF06508	Queuosine biosynthesis protein QueC
AL541_15615	PF13394	4Fe-4S single cluster domain
AL541_15620	PF08282	haloacid dehalogenase-like hydrolase
AL541_15625	PF00293	NUDIX domain
AL541_15630	PF00089	Trypsin
AL541_15630	PF02839	Carbohydrate binding domain
AL541_15635	PF00583	Acetyltransferase (GNAT) family
AL541_15640	PF00501	AMP-binding enzyme
AL541_15640	PF13193	AMP-binding enzyme C-terminal domain
AL541_15640	PF16177	AL541_15640
AL541_15645	PF04303	PrpF protein
AL541_15650	PF00330	Aconitase family (aconitate hydratase)
AL541_15650	PF00694	Aconitase C-terminal domain
AL541_15655	PF00285	Citrate synthase
AL541_15660	PF13714	Phosphoenolpyruvate phosphomutase
AL541_15665	PF00392	Bacterial regulatory proteins, gntR family
AL541_15665	PF07729	FCD domain
AL541_15670	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL541_15675	PF03401	Tripartite tricarboxylate transporter family receptor
AL541_15680	PF07331	AL541_15680
AL541_15685	PF01970	AL541_15685
AL541_15695	PF01925	AL541_15695
AL541_15700	PF16868	AL541_15700
AL541_15710	PF05844	YopD protein
AL541_15715	PF04888	AL541_15715
AL541_15720	PF07720	Tetratricopeptide repeat
AL541_15725	PF04792	V antigen (LcrV) protein
AL541_15730	PF07216	AL541_15730
AL541_15735	PF09621	AL541_15735
AL541_15740	PF00771	FHIPEP family
AL541_15745	PF14559	Tetratricopeptide repeat
AL541_15750	PF09474	AL541_15750
AL541_15755	PF05932	Tir chaperone protein (CesT) family
AL541_15760	PF09059	TyeA
AL541_15765	PF07201	HrpJ-like domain
AL541_15770	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL541_15770	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL541_15775	PF07321	Type III secretion protein YscO
AL541_15785	PF01052	Surface presentation of antigens (SPOA)
AL541_15790	PF00813	AL541_15790
AL541_15795	PF01313	AL541_15795
AL541_15800	PF01311	AL541_15800
AL541_15805	PF01312	FlhB HrpN YscU SpaS Family
AL541_15810	PF12833	Helix-turn-helix domain
AL541_15815	PF00892	EamA-like transporter family
AL541_15825	PF05932	Tir chaperone protein (CesT) family
AL541_15835	PF05932	Tir chaperone protein (CesT) family
AL541_15840	PF02661	Fic/DOC family
AL541_15845	PF05932	Tir chaperone protein (CesT) family
AL541_15850	PF02108	AL541_15850
AL541_15855	PF06578	AL541_15855
AL541_15860	PF01514	Secretory protein of YscJ/FliF family
AL541_15865	PF17001	AL541_15865
AL541_15870	PF09025	YopR Core
AL541_15875	PF09477	Bacterial type II secretion system chaperone protein (type_III_yscG)
AL541_15880	PF09392	Type III secretion needle MxiH like
AL541_15885	PF08988	Protein of unknown function (DUF1895)
AL541_15890	PF16693	AL541_15890
AL541_15890	PF16697	AL541_15890
AL541_15895	PF00263	AL541_15895
AL541_15895	PF03958	Bacterial type II/III secretion system short domain
AL541_15900	PF05932	Tir chaperone protein (CesT) family
AL541_15905	PF16806	AL541_15905
AL541_15910	PF12833	Helix-turn-helix domain
AL541_15915	PF09619	Type III secretion system lipoprotein chaperone (YscW)
AL541_15920	PF05932	Tir chaperone protein (CesT) family
AL541_15930	PF00171	Aldehyde dehydrogenase family
AL541_15935	PF00158	Sigma-54 interaction domain
AL541_15935	PF01590	GAF domain
AL541_15935	PF02954	Bacterial regulatory protein, Fis family
AL541_15950	PF00393	6-phosphogluconate dehydrogenase, C-terminal domain
AL541_15950	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL541_15955	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL541_15960	PF00479	Glucose-6-phosphate dehydrogenase, NAD binding domain
AL541_15960	PF02781	Glucose-6-phosphate dehydrogenase, C-terminal domain
AL541_15965	PF12833	Helix-turn-helix domain
AL541_15965	PF14526	Integron-associated effector binding protein
AL541_15970	PF00593	TonB dependent receptor
AL541_15970	PF07715	TonB-dependent Receptor Plug Domain
AL541_15975	PF00072	Response regulator receiver domain
AL541_15975	PF12431	AL541_15975
AL541_15980	PF00989	PAS fold
AL541_15980	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_15980	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AL541_15980	PF17203	AL541_15980
AL541_15990	PF02321	Outer membrane efflux protein
AL541_15995	PF13437	HlyD family secretion protein
AL541_15995	PF13533	Biotin-lipoyl like
AL541_16000	PF12698	ABC-2 family transporter protein
AL541_16005	PF12698	ABC-2 family transporter protein
AL541_16010	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_16010	PF03466	LysR substrate binding domain
AL541_16020	PF01734	Patatin-like phospholipase
AL541_16025	PF08543	Phosphomethylpyrimidine kinase
AL541_16030	PF00155	Aminotransferase class I and II
AL541_16035	PF02080	TrkA-C domain
AL541_16035	PF06826	AL541_16035
AL541_16040	PF07869	AL541_16040
AL541_16045	PF16576	AL541_16045
AL541_16050	PF04632	AL541_16050
AL541_16060	PF00135	Carboxylesterase family
AL541_16065	PF13091	PLD-like domain
AL541_16070	PF01103	Surface antigen
AL541_16070	PF17243	AL541_16070
AL541_16075	PF11008	AL541_16075
AL541_16080	PF01810	AL541_16080
AL541_16085	PF01810	AL541_16085
AL541_16090	PF07237	Protein of unknown function (DUF1428)
AL541_16100	PF03992	Antibiotic biosynthesis monooxygenase
AL541_16105	PF03992	Antibiotic biosynthesis monooxygenase
AL541_16110	PF01411	tRNA synthetases class II (A)
AL541_16110	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL541_16115	PF13302	Acetyltransferase (GNAT) domain
AL541_16120	PF12464	Maltose acetyltransferase
AL541_16120	PF14602	Hexapeptide repeat of succinyl-transferase
AL541_16125	PF06271	AL541_16125
AL541_16130	PF01243	Pyridoxamine 5'-phosphate oxidase
AL541_16135	PF09413	Domain of unknown function (DUF2007)
AL541_16145	PF16695	AL541_16145
AL541_16150	PF13527	Acetyltransferase (GNAT) domain
AL541_16155	PF05016	Plasmid stabilisation system protein
AL541_16170	PF11665	AL541_16170
AL541_16180	PF04634	Protein of unknown function, DUF600
AL541_16185	PF11665	AL541_16185
AL541_16195	PF11665	AL541_16195
AL541_16205	PF11665	AL541_16205
AL541_16230	PF03831	PhnA protein
AL541_16230	PF08274	PhnA Zinc-Ribbon
AL541_16240	PF11665	AL541_16240
AL541_16260	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL541_16280	PF11665	AL541_16280
AL541_16300	PF11665	AL541_16300
AL541_16320	PF13333	AL541_16320
AL541_16325	PF00665	Integrase core domain
AL541_16325	PF13276	AL541_16325
AL541_16330	PF01527	Transposase
AL541_16335	PF11665	AL541_16335
AL541_16340	PF00293	NUDIX domain
AL541_16365	PF13957	AL541_16365
AL541_16385	PF11665	AL541_16385
AL541_16410	PF11665	AL541_16410
AL541_16415	PF01965	DJ-1/PfpI family
AL541_16420	PF13847	Methyltransferase domain
AL541_16440	PF07653	Variant SH3 domain
AL541_16450	PF10387	Protein of unknown function (DUF2442)
AL541_16455	PF13711	AL541_16455
AL541_16460	PF11665	AL541_16460
AL541_16470	PF11665	AL541_16470
AL541_16475	PF11964	SpoIIAA-like
AL541_16490	PF01636	Phosphotransferase enzyme family
AL541_16505	PF11665	AL541_16505
AL541_16510	PF04221	RelB antitoxin
AL541_16515	PF05016	Plasmid stabilisation system protein
AL541_16520	PF06042	Bacterial protein of unknown function (DUF925)
AL541_16535	PF13643	AL541_16535
AL541_16540	PF11665	AL541_16540
AL541_16545	PF11665	AL541_16545
AL541_16550	PF00561	alpha/beta hydrolase fold
AL541_16565	PF11665	AL541_16565
AL541_16580	PF11665	AL541_16580
AL541_16585	PF13847	Methyltransferase domain
AL541_16600	PF08867	AL541_16600
AL541_16620	PF13957	AL541_16620
AL541_16635	PF11665	AL541_16635
AL541_16650	PF00583	Acetyltransferase (GNAT) family
AL541_16655	PF11665	AL541_16655
AL541_16665	PF11665	AL541_16665
AL541_16670	PF06189	AL541_16670
AL541_16675	PF11665	AL541_16675
AL541_16685	PF11665	AL541_16685
AL541_16690	PF01230	HIT domain
AL541_16695	PF11665	AL541_16695
AL541_16700	PF10544	AL541_16700
AL541_16705	PF11665	AL541_16705
AL541_16715	PF00857	Isochorismatase family
AL541_16720	PF11665	AL541_16720
AL541_16725	PF13316	AL541_16725
AL541_16730	PF00583	Acetyltransferase (GNAT) family
AL541_16740	PF03167	Uracil DNA glycosylase superfamily
AL541_16755	PF11665	AL541_16755
AL541_16765	PF11665	AL541_16765
AL541_16775	PF11665	AL541_16775
AL541_16780	PF13302	Acetyltransferase (GNAT) domain
AL541_16785	PF11665	AL541_16785
AL541_16795	PF11665	AL541_16795
AL541_16805	PF11665	AL541_16805
AL541_16810	PF13420	Acetyltransferase (GNAT) domain
AL541_16815	PF11665	AL541_16815
AL541_16820	PF00583	Acetyltransferase (GNAT) family
AL541_16825	PF11665	AL541_16825
AL541_16835	PF02566	OsmC-like protein
AL541_16840	PF11665	AL541_16840
AL541_16845	PF01810	AL541_16845
AL541_16865	PF11665	AL541_16865
AL541_16870	PF00583	Acetyltransferase (GNAT) family
AL541_16875	PF11665	AL541_16875
AL541_16890	PF11665	AL541_16890
AL541_16895	PF14355	AL541_16895
AL541_16910	PF11665	AL541_16910
AL541_16915	PF04229	GrpB protein
AL541_16920	PF11665	AL541_16920
AL541_16925	PF00583	Acetyltransferase (GNAT) family
AL541_16930	PF11665	AL541_16930
AL541_16935	PF13302	Acetyltransferase (GNAT) domain
AL541_16940	PF11665	AL541_16940
AL541_16945	PF13310	AL541_16945
AL541_16955	PF11665	AL541_16955
AL541_16965	PF11665	AL541_16965
AL541_16975	PF11665	AL541_16975
AL541_16990	PF11665	AL541_16990
AL541_17005	PF13302	Acetyltransferase (GNAT) domain
AL541_17010	PF04480	Protein of unknown function (DUF559)
AL541_17020	PF11665	AL541_17020
AL541_17025	PF00293	NUDIX domain
AL541_17030	PF11665	AL541_17030
AL541_17035	PF00583	Acetyltransferase (GNAT) family
AL541_17045	PF11665	AL541_17045
AL541_17050	PF13676	TIR domain
AL541_17055	PF11665	AL541_17055
AL541_17065	PF11665	AL541_17065
AL541_17075	PF11665	AL541_17075
AL541_17080	PF13673	Acetyltransferase (GNAT) domain
AL541_17085	PF11665	AL541_17085
AL541_17095	PF11665	AL541_17095
AL541_17100	PF03544	Gram-negative bacterial TonB protein C-terminal
AL541_17105	PF13302	Acetyltransferase (GNAT) domain
AL541_17115	PF07081	Protein of unknown function (DUF1349)
AL541_17120	PF11665	AL541_17120
AL541_17125	PF07007	Protein of unknown function (DUF1311)
AL541_17130	PF11665	AL541_17130
AL541_17135	PF10137	AL541_17135
AL541_17145	PF11665	AL541_17145
AL541_17160	PF11665	AL541_17160
AL541_17175	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL541_17180	PF11665	AL541_17180
AL541_17210	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system
AL541_17215	PF05016	Plasmid stabilisation system protein
AL541_17225	PF11665	AL541_17225
AL541_17235	PF11665	AL541_17235
AL541_17240	PF03992	Antibiotic biosynthesis monooxygenase
AL541_17245	PF11665	AL541_17245
AL541_17250	PF10077	AL541_17250
AL541_17255	PF00589	Phage integrase family
AL541_17255	PF13356	Domain of unknown function (DUF4102)
AL541_17275	PF08241	Methyltransferase domain
AL541_17280	PF01381	Helix-turn-helix
AL541_17290	PF05930	Prophage CP4-57 regulatory protein (AlpA)
AL541_17325	PF01648	4'-phosphopantetheinyl transferase superfamily
AL541_17335	PF00793	DAHP synthetase I family
AL541_17340	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_17345	PF00425	chorismate binding enzyme
AL541_17350	PF00501	AMP-binding enzyme
AL541_17350	PF13193	AMP-binding enzyme C-terminal domain
AL541_17355	PF00550	Phosphopantetheine attachment site
AL541_17355	PF00857	Isochorismatase family
AL541_17360	PF01497	Periplasmic binding protein
AL541_17365	PF05977	Transmembrane secretion effector
AL541_17370	PF01032	FecCD transport family
AL541_17375	PF01032	FecCD transport family
AL541_17380	PF00005	ABC transporter
AL541_17385	PF00501	AMP-binding enzyme
AL541_17385	PF00550	Phosphopantetheine attachment site
AL541_17385	PF00668	Condensation domain
AL541_17385	PF00975	Thioesterase domain
AL541_17385	PF13193	AMP-binding enzyme C-terminal domain
AL541_17390	PF03621	MbtH-like protein
AL541_17395	PF00756	Putative esterase
AL541_17395	PF11806	Domain of unknown function (DUF3327)
AL541_17400	PF00593	TonB dependent receptor
AL541_17400	PF07715	TonB-dependent Receptor Plug Domain
AL541_17405	PF03824	AL541_17405
AL541_17410	PF07883	Cupin domain
AL541_17420	PF00027	Cyclic nucleotide-binding domain
AL541_17420	PF13545	Crp-like helix-turn-helix domain
AL541_17425	PF13429	Tetratricopeptide repeat
AL541_17435	PF02810	SEC-C motif
AL541_17440	PF01636	Phosphotransferase enzyme family
AL541_17445	PF00583	Acetyltransferase (GNAT) family
AL541_17455	PF11665	AL541_17455
AL541_17465	PF11665	AL541_17465
AL541_17475	PF11665	AL541_17475
AL541_17485	PF13673	Acetyltransferase (GNAT) domain
AL541_17495	PF04607	Region found in RelA / SpoT proteins
AL541_17495	PF11665	AL541_17495
AL541_17505	PF11665	AL541_17505
AL541_17510	PF00293	NUDIX domain
AL541_17515	PF11665	AL541_17515
AL541_17530	PF00857	Isochorismatase family
AL541_17535	PF11665	AL541_17535
AL541_17545	PF11665	AL541_17545
AL541_17550	PF13316	AL541_17550
AL541_17560	PF11665	AL541_17560
AL541_17570	PF11665	AL541_17570
AL541_17600	PF11665	AL541_17600
AL541_17610	PF11665	AL541_17610
AL541_17620	PF11665	AL541_17620
AL541_17630	PF11665	AL541_17630
AL541_17635	PF13847	Methyltransferase domain
AL541_17640	PF11665	AL541_17640
AL541_17645	PF07653	Variant SH3 domain
AL541_17655	PF00583	Acetyltransferase (GNAT) family
AL541_17670	PF11665	AL541_17670
AL541_17675	PF13302	Acetyltransferase (GNAT) domain
AL541_17680	PF11665	AL541_17680
AL541_17685	PF11665	AL541_17685
AL541_17695	PF11665	AL541_17695
AL541_17705	PF11665	AL541_17705
AL541_17715	PF11665	AL541_17715
AL541_17725	PF11665	AL541_17725
AL541_17730	PF13420	Acetyltransferase (GNAT) domain
AL541_17735	PF11665	AL541_17735
AL541_17740	PF13316	AL541_17740
AL541_17745	PF13302	Acetyltransferase (GNAT) domain
AL541_17750	PF11665	AL541_17750
AL541_17760	PF11665	AL541_17760
AL541_17765	PF02810	SEC-C motif
AL541_17770	PF11665	AL541_17770
AL541_17780	PF11665	AL541_17780
AL541_17785	PF07007	Protein of unknown function (DUF1311)
AL541_17800	PF11665	AL541_17800
AL541_17810	PF11665	AL541_17810
AL541_17830	PF11665	AL541_17830
AL541_17845	PF11665	AL541_17845
AL541_17855	PF11665	AL541_17855
AL541_17865	PF11665	AL541_17865
AL541_17870	PF00313	'Cold-shock' DNA-binding domain
AL541_17870	PF06961	AL541_17870
AL541_17880	PF11665	AL541_17880
AL541_17905	PF00589	Phage integrase family
AL541_17905	PF13495	Phage integrase, N-terminal SAM-like domain
AL541_17910	PF11163	AL541_17910
AL541_17915	PF13023	HD domain
AL541_17920	PF13302	Acetyltransferase (GNAT) domain
AL541_17925	PF00158	Sigma-54 interaction domain
AL541_17925	PF00989	PAS fold
AL541_17930	PF05128	AL541_17930
AL541_17935	PF04317	AL541_17935
AL541_17945	PF05681	AL541_17945
AL541_17945	PF05683	Fumarase C-terminus
AL541_17955	PF00425	chorismate binding enzyme
AL541_17955	PF04715	Anthranilate synthase component I, N terminal region
AL541_17960	PF00072	Response regulator receiver domain
AL541_17960	PF00512	His Kinase A (phospho-acceptor) domain
AL541_17960	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_17965	PF07700	Heme NO binding
AL541_17970	PF00293	NUDIX domain
AL541_17975	PF03222	Tryptophan/tyrosine permease family
AL541_17980	PF03313	AL541_17980
AL541_17980	PF03315	Serine dehydratase beta chain
AL541_17985	PF00563	EAL domain
AL541_17990	PF00583	Acetyltransferase (GNAT) family
AL541_17995	PF01242	6-pyruvoyl tetrahydropterin synthase
AL541_18000	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_18005	PF00152	tRNA synthetases class II (D, K and N)
AL541_18005	PF01336	OB-fold nucleic acid binding domain
AL541_18015	PF00155	Aminotransferase class I and II
AL541_18015	PF00392	Bacterial regulatory proteins, gntR family
AL541_18030	PF00155	Aminotransferase class I and II
AL541_18035	PF13505	Outer membrane protein beta-barrel domain
AL541_18040	PF00027	Cyclic nucleotide-binding domain
AL541_18040	PF00571	CBS domain
AL541_18040	PF03445	AL541_18040
AL541_18040	PF10335	AL541_18040
AL541_18045	PF00929	Exonuclease
AL541_18050	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_18050	PF00672	HAMP domain
AL541_18050	PF02743	Cache domain
AL541_18055	PF02028	BCCT family transporter
AL541_18060	PF01047	MarR family
AL541_18065	PF00072	Response regulator receiver domain
AL541_18065	PF00196	Bacterial regulatory proteins, luxR family
AL541_18070	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_18070	PF07730	Histidine kinase
AL541_18070	PF17200	AL541_18070
AL541_18075	PF06808	AL541_18075
AL541_18080	PF04290	AL541_18080
AL541_18085	PF03480	Bacterial extracellular solute-binding protein, family 7
AL541_18095	PF11201	AL541_18095
AL541_18100	PF00753	Metallo-beta-lactamase superfamily
AL541_18105	PF05951	AL541_18105
AL541_18110	PF01471	Putative peptidoglycan binding domain
AL541_18110	PF03734	L,D-transpeptidase catalytic domain
AL541_18115	PF07433	AL541_18115
AL541_18120	PF09375	Imelysin
AL541_18125	PF06537	AL541_18125
AL541_18130	PF09375	Imelysin
AL541_18135	PF00925	GTP cyclohydrolase II
AL541_18145	PF03918	Cytochrome C biogenesis protein
AL541_18150	PF08534	Redoxin
AL541_18155	PF01578	AL541_18155
AL541_18155	PF16327	AL541_18155
AL541_18160	PF03916	AL541_18160
AL541_18165	PF12800	4Fe-4S binding domain
AL541_18165	PF13247	4Fe-4S dicluster domain
AL541_18170	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
AL541_18175	PF02335	Cytochrome c552
AL541_18185	PF07719	Tetratricopeptide repeat
AL541_18190	PF00521	DNA gyrase/topoisomerase IV, subunit A
AL541_18190	PF03989	DNA gyrase C-terminal domain, beta-propeller
AL541_18195	PF13489	Methyltransferase domain
AL541_18205	PF00317	Ribonucleotide reductase, all-alpha domain
AL541_18205	PF02867	Ribonucleotide reductase, barrel domain
AL541_18205	PF03477	ATP cone domain
AL541_18210	PF00268	Ribonucleotide reductase, small chain
AL541_18215	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL541_18220	PF00994	Probable molybdopterin binding domain
AL541_18225	PF13084	AL541_18225
AL541_18230	PF13740	ACT domain
AL541_18235	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL541_18240	PF03435	Saccharopine dehydrogenase
AL541_18240	PF16653	AL541_18240
AL541_18245	PF00202	Aminotransferase class-III
AL541_18245	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL541_18270	PF01066	CDP-alcohol phosphatidyltransferase
AL541_18275	PF01541	GIY-YIG catalytic domain
AL541_18275	PF02151	UvrB/uvrC motif
AL541_18275	PF08459	UvrC Helix-hairpin-helix N-terminal
AL541_18275	PF14520	Helix-hairpin-helix domain
AL541_18280	PF00072	Response regulator receiver domain
AL541_18280	PF00196	Bacterial regulatory proteins, luxR family
AL541_18285	PF00136	DNA polymerase family B
AL541_18285	PF03104	DNA polymerase family B, exonuclease domain
AL541_18295	PF01132	Elongation factor P (EF-P) OB domain
AL541_18295	PF08207	Elongation factor P (EF-P) KOW-like domain
AL541_18295	PF09285	Elongation factor P, C-terminal
AL541_18300	PF04269	Protein of unknown function, DUF440
AL541_18305	PF00849	RNA pseudouridylate synthase
AL541_18305	PF01479	S4 domain
AL541_18310	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
AL541_18315	PF01300	Telomere recombination
AL541_18320	PF02811	PHP domain
AL541_18325	PF08056	AL541_18325
AL541_18330	PF00425	chorismate binding enzyme
AL541_18330	PF04715	Anthranilate synthase component I, N terminal region
AL541_18335	PF00117	Glutamine amidotransferase class-I
AL541_18340	PF00591	Glycosyl transferase family, a/b domain
AL541_18340	PF02885	Glycosyl transferase family, helical bundle domain
AL541_18345	PF00218	Indole-3-glycerol phosphate synthase
AL541_18345	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
AL541_18350	PF00291	Pyridoxal-phosphate dependent enzyme
AL541_18355	PF00290	Tryptophan synthase alpha chain
AL541_18360	PF00027	Cyclic nucleotide-binding domain
AL541_18360	PF13545	Crp-like helix-turn-helix domain
AL541_18365	PF00501	AMP-binding enzyme
AL541_18365	PF13193	AMP-binding enzyme C-terminal domain
AL541_18375	PF00375	Sodium:dicarboxylate symporter family
AL541_18380	PF17327	AL541_18380
AL541_18385	PF00072	Response regulator receiver domain
AL541_18385	PF00512	His Kinase A (phospho-acceptor) domain
AL541_18385	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_18395	PF04279	AL541_18395
AL541_18400	PF03061	Thioesterase superfamily
AL541_18405	PF03795	YCII-related domain
AL541_18410	PF16549	AL541_18410
AL541_18415	PF01717	Cobalamin-independent synthase, Catalytic domain
AL541_18415	PF08267	Cobalamin-independent synthase, N-terminal domain
AL541_18420	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_18420	PF03466	LysR substrate binding domain
AL541_18425	PF14056	AL541_18425
AL541_18435	PF00563	EAL domain
AL541_18435	PF00571	CBS domain
AL541_18435	PF00989	PAS fold
AL541_18440	PF04055	Radical SAM superfamily
AL541_18440	PF08497	AL541_18440
AL541_18440	PF11842	AL541_18440
AL541_18455	PF04138	AL541_18455
AL541_18460	PF02366	AL541_18460
AL541_18465	PF00535	Glycosyl transferase family 2
AL541_18470	PF00072	Response regulator receiver domain
AL541_18470	PF00486	Transcriptional regulatory protein, C terminal
AL541_18475	PF00512	His Kinase A (phospho-acceptor) domain
AL541_18475	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_18480	PF00069	Protein kinase domain
AL541_18480	PF13855	Leucine rich repeat
AL541_18490	PF00857	Isochorismatase family
AL541_18495	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_18495	PF03466	LysR substrate binding domain
AL541_18500	PF13437	HlyD family secretion protein
AL541_18500	PF13533	Biotin-lipoyl like
AL541_18505	PF11168	AL541_18505
AL541_18505	PF13515	AL541_18505
AL541_18510	PF01717	Cobalamin-independent synthase, Catalytic domain
AL541_18515	PF08908	AL541_18515
AL541_18520	PF07968	Leukocidin/Hemolysin toxin family
AL541_18530	PF00005	ABC transporter
AL541_18535	PF02687	AL541_18535
AL541_18535	PF12704	MacB-like periplasmic core domain
AL541_18540	PF02687	AL541_18540
AL541_18540	PF12704	MacB-like periplasmic core domain
AL541_18545	PF02321	Outer membrane efflux protein
AL541_18550	PF16576	AL541_18550
AL541_18560	PF05257	CHAP domain
AL541_18570	PF00085	Thioredoxin
AL541_18575	PF02683	AL541_18575
AL541_18575	PF11412	Disulphide bond corrector protein DsbC
AL541_18575	PF13899	Thioredoxin-like
AL541_18585	PF00072	Response regulator receiver domain
AL541_18585	PF00196	Bacterial regulatory proteins, luxR family
AL541_18590	PF00512	His Kinase A (phospho-acceptor) domain
AL541_18590	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_18590	PF12974	ABC transporter, phosphonate, periplasmic substrate-binding protein
AL541_18595	PF13247	4Fe-4S dicluster domain
AL541_18600	PF03916	AL541_18600
AL541_18605	PF00384	Molybdopterin oxidoreductase
AL541_18605	PF01568	Molydopterin dinucleotide binding domain
AL541_18610	PF00034	Cytochrome c
AL541_18615	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL541_18620	PF04403	AL541_18620
AL541_18625	PF02470	AL541_18625
AL541_18630	PF03886	Protein of unknown function (DUF330)
AL541_18645	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_18650	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL541_18655	PF13176	Tetratricopeptide repeat
AL541_18655	PF14559	Tetratricopeptide repeat
AL541_18660	PF06305	AL541_18660
AL541_18665	PF00216	Bacterial DNA-binding protein
AL541_18670	PF00575	S1 RNA binding domain
AL541_18675	PF02224	Cytidylate kinase
AL541_18680	PF01343	Peptidase family S49
AL541_18680	PF08496	AL541_18680
AL541_18685	PF00106	short chain dehydrogenase
AL541_18690	PF00154	recA bacterial DNA recombination protein
AL541_18695	PF00817	impB/mucB/samB family
AL541_18700	PF01336	OB-fold nucleic acid binding domain
AL541_18700	PF02811	PHP domain
AL541_18700	PF07733	Bacterial DNA polymerase III alpha subunit
AL541_18700	PF14579	Helix-hairpin-helix motif
AL541_18705	PF00072	Response regulator receiver domain
AL541_18705	PF01584	CheW-like domain
AL541_18710	PF00480	ROK family
AL541_18715	PF00224	Pyruvate kinase, barrel domain
AL541_18715	PF02887	Pyruvate kinase, alpha/beta domain
AL541_18720	PF01734	Patatin-like phospholipase
AL541_18730	PF13505	Outer membrane protein beta-barrel domain
AL541_18735	PF00209	Sodium:neurotransmitter symporter family
AL541_18745	PF00367	phosphotransferase system, EIIB
AL541_18745	PF02378	Phosphotransferase system, EIIC
AL541_18750	PF01026	TatD related DNase
AL541_18755	PF09115	DNA polymerase III, delta subunit, C terminal
AL541_18755	PF13177	DNA polymerase III, delta subunit
AL541_18760	PF02223	Thymidylate kinase
AL541_18765	PF02618	YceG-like family
AL541_18770	PF01063	Aminotransferase class IV
AL541_18775	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL541_18775	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL541_18780	PF00550	Phosphopantetheine attachment site
AL541_18785	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_18790	PF00698	Acyl transferase domain
AL541_18795	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL541_18795	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL541_18800	PF02504	Fatty acid synthesis protein
AL541_18805	PF01783	Ribosomal L32p protein family
AL541_18810	PF02620	AL541_18810
AL541_18815	PF02545	Maf-like protein
AL541_18820	PF00849	RNA pseudouridylate synthase
AL541_18820	PF01479	S4 domain
AL541_18830	PF00575	S1 RNA binding domain
AL541_18830	PF10150	Ribonuclease E/G family
AL541_18840	PF00916	AL541_18840
AL541_18840	PF01740	STAS domain
AL541_18845	PF01451	Low molecular weight phosphotyrosine protein phosphatase
AL541_18850	PF02572	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
AL541_18850	PF12557	Cob(I)alamin adenosyltransferase N terminal
AL541_18855	PF05170	AL541_18855
AL541_18860	PF00485	Phosphoribulokinase / Uridine kinase family
AL541_18865	PF10609	ParA/MinD ATPase like
AL541_18870	PF01588	Putative tRNA binding domain
AL541_18870	PF09334	tRNA synthetases class I (M)
AL541_18890	PF00392	Bacterial regulatory proteins, gntR family
AL541_18890	PF07840	FadR C-terminal domain
AL541_18895	PF06450	AL541_18895
AL541_18900	PF02600	Disulfide bond formation protein DsbB
AL541_18905	PF02810	SEC-C motif
AL541_18905	PF03695	Uncharacterised protein family (UPF0149)
AL541_18910	PF01207	Dihydrouridine synthase (Dus)
AL541_18915	PF00990	GGDEF domain
AL541_18920	PF00128	Alpha amylase, catalytic domain
AL541_18920	PF02903	Alpha amylase, N-terminal ig-like domain
AL541_18925	PF00005	ABC transporter
AL541_18930	PF02653	AL541_18930
AL541_18935	PF04392	ABC transporter substrate binding protein
AL541_18940	PF04217	AL541_18940
AL541_18945	PF00871	Acetokinase family
AL541_18950	PF01515	Phosphate acetyl/butaryl transferase
AL541_18950	PF07085	DRTGG domain
AL541_18950	PF13500	AAA domain
AL541_18960	PF13409	Glutathione S-transferase, N-terminal domain
AL541_18960	PF13410	Glutathione S-transferase, C-terminal domain
AL541_18965	PF00005	ABC transporter
AL541_18965	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_18970	PF00005	ABC transporter
AL541_18970	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_18975	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_18975	PF12911	AL541_18975
AL541_18980	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_18985	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_18990	PF02391	MoaE protein
AL541_18995	PF02597	ThiS family
AL541_19000	PF01967	MoaC family
AL541_19005	PF00994	Probable molybdopterin binding domain
AL541_19010	PF04055	Radical SAM superfamily
AL541_19010	PF06463	Molybdenum Cofactor Synthesis C
AL541_19010	PF13353	4Fe-4S single cluster domain
AL541_19015	PF01933	Uncharacterised protein family UPF0052
AL541_19020	PF01627	Hpt domain
AL541_19025	PF00072	Response regulator receiver domain
AL541_19025	PF00158	Sigma-54 interaction domain
AL541_19025	PF02954	Bacterial regulatory protein, Fis family
AL541_19030	PF00271	Helicase conserved C-terminal domain
AL541_19030	PF02151	UvrB/uvrC motif
AL541_19030	PF04851	Type III restriction enzyme, res subunit
AL541_19030	PF12344	Ultra-violet resistance protein B
AL541_19040	PF01228	Glycine radical
AL541_19040	PF02901	Pyruvate formate lyase
AL541_19045	PF02508	AL541_19045
AL541_19050	PF04060	Putative Fe-S cluster
AL541_19050	PF14697	4Fe-4S dicluster domain
AL541_19055	PF01512	Respiratory-chain NADH dehydrogenase 51 Kd subunit
AL541_19055	PF10531	SLBB domain
AL541_19055	PF12838	4Fe-4S dicluster domain
AL541_19055	PF13375	RnfC Barrel sandwich hybrid domain
AL541_19060	PF03116	AL541_19060
AL541_19065	PF04205	FMN-binding domain
AL541_19070	PF02508	AL541_19070
AL541_19075	PF00633	Helix-hairpin-helix motif
AL541_19075	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL541_19075	PF10576	Iron-sulfur binding domain of endonuclease III
AL541_19080	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_19085	PF10952	AL541_19085
AL541_19090	PF00691	OmpA family
AL541_19100	PF00929	Exonuclease
AL541_19105	PF03553	AL541_19105
AL541_19105	PF13726	AL541_19105
AL541_19110	PF13743	Thioredoxin
AL541_19125	PF00462	Glutaredoxin
AL541_19130	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL541_19130	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL541_19140	PF11993	AL541_19140
AL541_19145	PF00106	short chain dehydrogenase
AL541_19150	PF00171	Aldehyde dehydrogenase family
AL541_19150	PF00465	Iron-containing alcohol dehydrogenase
AL541_19155	PF01914	AL541_19155
AL541_19160	PF00520	Ion transport protein
AL541_19165	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL541_19165	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL541_19170	PF03553	AL541_19170
AL541_19180	PF01627	Hpt domain
AL541_19185	PF04245	AL541_19185
AL541_19190	PF07208	Protein of unknown function (DUF1414)
AL541_19195	PF00884	Sulfatase
AL541_19195	PF11893	AL541_19195
AL541_19205	PF00850	Histone deacetylase domain
AL541_19210	PF00106	short chain dehydrogenase
AL541_19220	PF01131	DNA topoisomerase
AL541_19220	PF01751	Toprim domain
AL541_19225	PF00881	Nitroreductase family
AL541_19230	PF07690	Major Facilitator Superfamily
AL541_19235	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL541_19235	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_19240	PF01343	Peptidase family S49
AL541_19245	PF00710	Asparaginase
AL541_19250	PF07023	AL541_19250
AL541_19255	PF11207	AL541_19255
AL541_19260	PF01641	SelR domain
AL541_19265	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL541_19265	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL541_19270	PF01263	Aldose 1-epimerase
AL541_19275	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_19275	PF17201	AL541_19275
AL541_19280	PF13847	Methyltransferase domain
AL541_19285	PF04187	Protein of unknown function, DUF399
AL541_19300	PF00245	Alkaline phosphatase
AL541_19305	PF13467	Ribbon-helix-helix domain
AL541_19310	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL541_19315	PF03992	Antibiotic biosynthesis monooxygenase
AL541_19320	PF00924	Mechanosensitive ion channel
AL541_19325	PF03692	AL541_19325
AL541_19330	PF04226	AL541_19330
AL541_19335	PF03692	AL541_19335
AL541_19340	PF00230	Major intrinsic protein
AL541_19345	PF02132	RecR protein
AL541_19345	PF13662	Toprim domain
AL541_19350	PF02575	YbaB/EbfC DNA-binding family
AL541_19355	PF12168	AL541_19355
AL541_19355	PF12169	DNA polymerase III subunits gamma and tau domain III
AL541_19355	PF12170	DNA polymerase III tau subunit V interacting with alpha
AL541_19355	PF13177	DNA polymerase III, delta subunit
AL541_19360	PF00156	Phosphoribosyl transferase domain
AL541_19365	PF04304	AL541_19365
AL541_19375	PF00072	Response regulator receiver domain
AL541_19380	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_19380	PF03466	LysR substrate binding domain
AL541_19385	PF00156	Phosphoribosyl transferase domain
AL541_19385	PF13522	Glutamine amidotransferase domain
AL541_19390	PF02674	AL541_19390
AL541_19395	PF05036	Sporulation related domain
AL541_19400	PF08245	Mur ligase middle domain
AL541_19405	PF01039	Carboxyl transferase domain
AL541_19415	PF01416	tRNA pseudouridine synthase
AL541_19425	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL541_19425	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL541_19430	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL541_19430	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL541_19430	PF11890	Domain of unknown function (DUF3410)
AL541_19440	PF00109	Beta-ketoacyl synthase, N-terminal domain
AL541_19440	PF02801	Beta-ketoacyl synthase, C-terminal domain
AL541_19445	PF01266	FAD dependent oxidoreductase
AL541_19445	PF05430	S-adenosyl-L-methionine-dependent methyltransferase
AL541_19450	PF03358	NADPH-dependent FMN reductase
AL541_19460	PF08891	AL541_19460
AL541_19465	PF04315	AL541_19465
AL541_19475	PF03458	AL541_19475
AL541_19480	PF01264	Chorismate synthase
AL541_19485	PF05175	Methyltransferase small domain
AL541_19490	PF01713	Smr domain
AL541_19495	PF00300	Histidine phosphatase superfamily (branch 1)
AL541_19500	PF00675	Insulinase (Peptidase family M16)
AL541_19500	PF05193	Peptidase M16 inactive domain
AL541_19500	PF16187	AL541_19500
AL541_19510	PF00378	Enoyl-CoA hydratase/isomerase family
AL541_19510	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AL541_19510	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AL541_19515	PF00108	Thiolase, N-terminal domain
AL541_19515	PF02803	Thiolase, C-terminal domain
AL541_19525	PF04542	Sigma-70 region 2
AL541_19525	PF08281	Sigma-70, region 4
AL541_19530	PF11859	AL541_19530
AL541_19535	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL541_19540	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL541_19545	PF04333	AL541_19545
AL541_19550	PF14559	Tetratricopeptide repeat
AL541_19555	PF03918	Cytochrome C biogenesis protein
AL541_19560	PF08534	Redoxin
AL541_19565	PF01578	AL541_19565
AL541_19565	PF16327	AL541_19565
AL541_19570	PF03100	CcmE
AL541_19575	PF04995	AL541_19575
AL541_19580	PF01578	AL541_19580
AL541_19585	PF03379	AL541_19585
AL541_19590	PF00005	ABC transporter
AL541_19595	PF10975	AL541_19595
AL541_19600	PF01584	CheW-like domain
AL541_19605	PF01584	CheW-like domain
AL541_19610	PF13614	AAA domain
AL541_19615	PF00072	Response regulator receiver domain
AL541_19615	PF01339	CheB methylesterase
AL541_19620	PF01584	CheW-like domain
AL541_19620	PF01627	Hpt domain
AL541_19620	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_19620	PF02895	Signal transducing histidine kinase, homodimeric domain
AL541_19625	PF04344	Chemotaxis phosphatase, CheZ
AL541_19630	PF00072	Response regulator receiver domain
AL541_19635	PF04539	Sigma-70 region 3
AL541_19635	PF04542	Sigma-70 region 2
AL541_19635	PF04545	Sigma-70, region 4
AL541_19640	PF10609	ParA/MinD ATPase like
AL541_19645	PF00448	SRP54-type protein, GTPase domain
AL541_19650	PF00771	FHIPEP family
AL541_19655	PF01312	FlhB HrpN YscU SpaS Family
AL541_19660	PF01311	AL541_19660
AL541_19665	PF01313	AL541_19665
AL541_19670	PF00813	AL541_19670
AL541_19675	PF04347	AL541_19675
AL541_19680	PF01052	Surface presentation of antigens (SPOA)
AL541_19685	PF01052	Surface presentation of antigens (SPOA)
AL541_19685	PF02154	Flagellar motor switch protein FliM
AL541_19690	PF03748	AL541_19690
AL541_19695	PF02120	Flagellar hook-length control protein FliK
AL541_19700	PF07978	NIPSNAP
AL541_19705	PF02050	Flagellar FliJ protein
AL541_19710	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL541_19715	PF02108	AL541_19715
AL541_19720	PF01706	FliG C-terminal domain
AL541_19720	PF14841	FliG middle domain
AL541_19720	PF14842	FliG N-terminal domain
AL541_19725	PF01514	Secretory protein of YscJ/FliF family
AL541_19725	PF08345	AL541_19725
AL541_19730	PF02049	AL541_19730
AL541_19735	PF00072	Response regulator receiver domain
AL541_19735	PF00158	Sigma-54 interaction domain
AL541_19735	PF02954	Bacterial regulatory protein, Fis family
AL541_19740	PF00512	His Kinase A (phospho-acceptor) domain
AL541_19740	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_19740	PF13188	PAS domain
AL541_19745	PF00158	Sigma-54 interaction domain
AL541_19745	PF02954	Bacterial regulatory protein, Fis family
AL541_19745	PF06490	AL541_19745
AL541_19750	PF02561	Flagellar protein FliS
AL541_19760	PF02465	AL541_19760
AL541_19760	PF07195	AL541_19760
AL541_19760	PF07196	Flagellin hook IN motif
AL541_19765	PF03646	FlaG protein
AL541_19770	PF00669	Bacterial flagellin N-terminal helical region
AL541_19770	PF00700	Bacterial flagellin C-terminal helical region
AL541_19770	PF07196	Flagellin hook IN motif
AL541_19775	PF00669	Bacterial flagellin N-terminal helical region
AL541_19775	PF00700	Bacterial flagellin C-terminal helical region
AL541_19775	PF07196	Flagellin hook IN motif
AL541_19785	PF00669	Bacterial flagellin N-terminal helical region
AL541_19785	PF00700	Bacterial flagellin C-terminal helical region
AL541_19785	PF07196	Flagellin hook IN motif
AL541_19790	PF04261	Dyp-type peroxidase family
AL541_19795	PF11143	AL541_19795
AL541_19800	PF11169	AL541_19800
AL541_19805	PF13698	AL541_19805
AL541_19810	PF09904	Winged helix-turn helix
AL541_19815	PF03960	ArsC family
AL541_19820	PF01546	Peptidase family M20/M25/M40
AL541_19820	PF07687	Peptidase dimerisation domain
AL541_19825	PF02557	D-alanyl-D-alanine carboxypeptidase
AL541_19830	PF11446	AL541_19830
AL541_19835	PF06804	NlpB/DapX lipoprotein
AL541_19840	PF00701	Dihydrodipicolinate synthetase family
AL541_19845	PF13740	ACT domain
AL541_19850	PF00578	AhpC/TSA family
AL541_19855	PF01594	AL541_19855
AL541_19860	PF01206	Sulfurtransferase TusA
AL541_19865	PF01435	Peptidase family M48
AL541_19865	PF14559	Tetratricopeptide repeat
AL541_19870	PF03960	ArsC family
AL541_19875	PF03358	NADPH-dependent FMN reductase
AL541_19880	PF09842	AL541_19880
AL541_19885	PF09839	AL541_19885
AL541_19890	PF00860	Permease family
AL541_19895	PF14681	Uracil phosphoribosyltransferase
AL541_19900	PF00586	AIR synthase related protein, N-terminal domain
AL541_19900	PF02769	AIR synthase related protein, C-terminal domain
AL541_19905	PF00551	Formyl transferase
AL541_19910	PF13230	Glutamine amidotransferases class-II
AL541_19915	PF13580	SIS domain
AL541_19920	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL541_19920	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL541_19920	PF09317	AL541_19920
AL541_19925	PF00916	AL541_19925
AL541_19925	PF01740	STAS domain
AL541_19930	PF13508	Acetyltransferase (GNAT) domain
AL541_19935	PF07087	AL541_19935
AL541_19950	PF00929	Exonuclease
AL541_19955	PF00075	RNase H
AL541_19960	PF08241	Methyltransferase domain
AL541_19965	PF00753	Metallo-beta-lactamase superfamily
AL541_19965	PF16123	AL541_19965
AL541_19970	PF01464	Transglycosylase SLT domain
AL541_19970	PF01476	LysM domain
AL541_19975	PF06930	AL541_19975
AL541_19980	PF03372	Endonuclease/Exonuclease/phosphatase family
AL541_19985	PF00543	Nitrogen regulatory protein P-II
AL541_19990	PF00034	Cytochrome c
AL541_19995	PF01171	PP-loop family
AL541_19995	PF09179	TilS substrate binding domain
AL541_19995	PF11734	TilS substrate C-terminal domain
AL541_20000	PF03255	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
AL541_20005	PF01336	OB-fold nucleic acid binding domain
AL541_20005	PF02811	PHP domain
AL541_20005	PF07733	Bacterial DNA polymerase III alpha subunit
AL541_20005	PF14579	Helix-hairpin-helix motif
AL541_20010	PF01351	Ribonuclease HII
AL541_20015	PF02684	AL541_20015
AL541_20020	PF00132	Bacterial transferase hexapeptide (six repeats)
AL541_20020	PF13720	Udp N-acetylglucosamine O-acyltransferase; Domain 2
AL541_20025	PF07977	FabA-like domain
AL541_20030	PF00132	Bacterial transferase hexapeptide (six repeats)
AL541_20030	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
AL541_20030	PF14602	Hexapeptide repeat of succinyl-transferase
AL541_20035	PF03938	Outer membrane protein (OmpH-like)
AL541_20040	PF01103	Surface antigen
AL541_20040	PF07244	Surface antigen variable number repeat
AL541_20045	PF02163	Peptidase family M50
AL541_20045	PF13180	PDZ domain
AL541_20050	PF02670	1-deoxy-D-xylulose 5-phosphate reductoisomerase
AL541_20050	PF08436	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal
AL541_20050	PF13288	DXP reductoisomerase C-terminal domain
AL541_20055	PF01148	Cytidylyltransferase family
AL541_20060	PF01255	Putative undecaprenyl diphosphate synthase
AL541_20065	PF01765	Ribosome recycling factor
AL541_20070	PF00696	Amino acid kinase family
AL541_20075	PF00889	Elongation factor TS
AL541_20080	PF00318	Ribosomal protein S2
AL541_20085	PF00557	Metallopeptidase family M24
AL541_20090	PF01842	ACT domain
AL541_20090	PF01909	Nucleotidyltransferase domain
AL541_20090	PF01966	HD domain
AL541_20090	PF08335	GlnD PII-uridylyltransferase
AL541_20095	PF11944	AL541_20095
AL541_20100	PF00849	RNA pseudouridylate synthase
AL541_20105	PF04287	tRNA pseudouridine synthase C
AL541_20110	PF12069	AL541_20110
AL541_20115	PF11743	AL541_20115
AL541_20120	PF13302	Acetyltransferase (GNAT) domain
AL541_20135	PF02639	AL541_20135
AL541_20140	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL541_20140	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL541_20145	PF01370	NAD dependent epimerase/dehydratase family
AL541_20150	PF00753	Metallo-beta-lactamase superfamily
AL541_20160	PF02655	ATP-grasp domain
AL541_20170	PF03806	AL541_20170
AL541_20175	PF00444	Ribosomal protein L36
AL541_20180	PF01197	Ribosomal protein L31
AL541_20185	PF01980	Uncharacterised protein family UPF0066
AL541_20190	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
AL541_20190	PF03129	Anticodon binding domain
AL541_20190	PF04073	Aminoacyl-tRNA editing domain
AL541_20195	PF04391	AL541_20195
AL541_20200	PF06786	AL541_20200
AL541_20205	PF14056	AL541_20205
AL541_20210	PF00209	Sodium:neurotransmitter symporter family
AL541_20215	PF00704	Glycosyl hydrolases family 18
AL541_20220	PF11101	AL541_20220
AL541_20225	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL541_20230	PF00270	DEAD/DEAH box helicase
AL541_20230	PF00271	Helicase conserved C-terminal domain
AL541_20230	PF16124	AL541_20230
AL541_20235	PF00817	impB/mucB/samB family
AL541_20235	PF11799	impB/mucB/samB family C-terminal domain
AL541_20240	PF10982	Protein of unknown function (DUF2789)
AL541_20245	PF00072	Response regulator receiver domain
AL541_20245	PF00990	GGDEF domain
AL541_20250	PF04400	AL541_20250
AL541_20255	PF02424	ApbE family
AL541_20260	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL541_20260	PF00175	Oxidoreductase NAD-binding domain
AL541_20260	PF00970	Oxidoreductase FAD-binding domain
AL541_20265	PF02508	AL541_20265
AL541_20270	PF02508	AL541_20270
AL541_20275	PF04205	FMN-binding domain
AL541_20280	PF03116	AL541_20280
AL541_20285	PF05896	AL541_20285
AL541_20285	PF11973	AL541_20285
AL541_20295	PF01722	BolA-like protein
AL541_20300	PF05175	Methyltransferase small domain
AL541_20300	PF08468	Methyltransferase small domain N-terminal
AL541_20305	PF03923	AL541_20305
AL541_20310	PF00160	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
AL541_20315	PF07690	Major Facilitator Superfamily
AL541_20320	PF12973	ChrR Cupin-like domain
AL541_20325	PF04542	Sigma-70 region 2
AL541_20325	PF04545	Sigma-70, region 4
AL541_20330	PF14344	AL541_20330
AL541_20335	PF02190	ATP-dependent protease La (LON) domain
AL541_20345	PF03502	Nucleoside-specific channel-forming protein, Tsx
AL541_20350	PF02558	Ketopantoate reductase PanE/ApbA
AL541_20350	PF08546	Ketopantoate reductase PanE/ApbA C terminal
AL541_20355	PF01965	DJ-1/PfpI family
AL541_20360	PF00266	Aminotransferase class-V
AL541_20365	PF00990	GGDEF domain
AL541_20370	PF02657	Fe-S metabolism associated domain
AL541_20375	PF00899	ThiF family
AL541_20380	PF03562	MltA specific insert domain
AL541_20380	PF06725	3D domain
AL541_20390	PF11012	AL541_20390
AL541_20395	PF00583	Acetyltransferase (GNAT) family
AL541_20395	PF00696	Amino acid kinase family
AL541_20415	PF13538	UvrD-like helicase C-terminal domain
AL541_20415	PF13604	AAA domain
AL541_20420	PF00580	UvrD/REP helicase N-terminal domain
AL541_20420	PF12705	PD-(D/E)XK nuclease superfamily
AL541_20420	PF13361	UvrD-like helicase C-terminal domain
AL541_20430	PF04257	Exodeoxyribonuclease V, gamma subunit
AL541_20435	PF00884	Sulfatase
AL541_20435	PF11893	AL541_20435
AL541_20440	PF03595	Voltage-dependent anion channel
AL541_20445	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_20445	PF03466	LysR substrate binding domain
AL541_20450	PF07130	YebG protein
AL541_20460	PF14412	AL541_20460
AL541_20465	PF14602	Hexapeptide repeat of succinyl-transferase
AL541_20465	PF14789	Tetrahydrodipicolinate N-succinyltransferase middle
AL541_20470	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL541_20475	PF07690	Major Facilitator Superfamily
AL541_20485	PF00230	Major intrinsic protein
AL541_20490	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
AL541_20490	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
AL541_20495	PF00455	AL541_20495
AL541_20495	PF08220	DeoR-like helix-turn-helix domain
AL541_20500	PF01266	FAD dependent oxidoreductase
AL541_20500	PF16901	AL541_20500
AL541_20505	PF01544	CorA-like Mg2+ transporter protein
AL541_20510	PF05940	AL541_20510
AL541_20515	PF06094	AIG2-like family
AL541_20520	PF13505	Outer membrane protein beta-barrel domain
AL541_20525	PF00356	Bacterial regulatory proteins, lacI family
AL541_20525	PF13377	Periplasmic binding protein-like domain
AL541_20530	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_20530	PF03466	LysR substrate binding domain
AL541_20535	PF02417	AL541_20535
AL541_20540	PF00196	Bacterial regulatory proteins, luxR family
AL541_20555	PF03412	Peptidase C39 family
AL541_20565	PF13557	AL541_20565
AL541_20570	PF00501	AMP-binding enzyme
AL541_20575	PF06568	AL541_20575
AL541_20580	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_20580	PF03466	LysR substrate binding domain
AL541_20585	PF00009	Elongation factor Tu GTP binding domain
AL541_20585	PF00679	Elongation factor G C-terminus
AL541_20585	PF03144	Elongation factor Tu domain 2
AL541_20585	PF03764	Elongation factor G, domain IV
AL541_20585	PF14492	Elongation Factor G, domain II
AL541_20590	PF13481	AAA domain
AL541_20590	PF13541	Subunit ChlI of Mg-chelatase
AL541_20595	PF07238	PilZ domain
AL541_20600	PF00702	haloacid dehalogenase-like hydrolase
AL541_20605	PF10144	AL541_20605
AL541_20610	PF01048	Phosphorylase superfamily
AL541_20615	PF01676	Metalloenzyme superfamily
AL541_20620	PF00591	Glycosyl transferase family, a/b domain
AL541_20620	PF02885	Glycosyl transferase family, helical bundle domain
AL541_20620	PF07831	Pyrimidine nucleoside phosphorylase C-terminal domain
AL541_20625	PF01791	DeoC/LacD family aldolase
AL541_20630	PF01773	Na+ dependent nucleoside transporter N-terminus
AL541_20630	PF07662	Na+ dependent nucleoside transporter C-terminus
AL541_20630	PF07670	Nucleoside recognition
AL541_20635	PF01026	TatD related DNase
AL541_20640	PF17320	AL541_20640
AL541_20645	PF00009	Elongation factor Tu GTP binding domain
AL541_20645	PF03144	Elongation factor Tu domain 2
AL541_20645	PF16658	AL541_20645
AL541_20650	PF00583	Acetyltransferase (GNAT) family
AL541_20655	PF03603	DNA polymerase III psi subunit
AL541_20665	PF13527	Acetyltransferase (GNAT) domain
AL541_20670	PF02036	SCP-2 sterol transfer family
AL541_20680	PF00563	EAL domain
AL541_20680	PF00990	GGDEF domain
AL541_20680	PF08448	PAS fold
AL541_20680	PF13188	PAS domain
AL541_20685	PF01136	AL541_20685
AL541_20690	PF01136	AL541_20690
AL541_20695	PF01554	MatE
AL541_20700	PF01047	MarR family
AL541_20710	PF00013	KH domain
AL541_20710	PF00575	S1 RNA binding domain
AL541_20710	PF01138	3' exoribonuclease family, domain 1
AL541_20710	PF03725	3' exoribonuclease family, domain 2
AL541_20710	PF03726	Polyribonucleotide nucleotidyltransferase, RNA binding domain
AL541_20715	PF00312	Ribosomal protein S15
AL541_20720	PF01509	TruB family pseudouridylate synthase (N terminal domain)
AL541_20720	PF09157	Pseudouridine synthase II TruB, C-terminal
AL541_20720	PF16198	AL541_20720
AL541_20725	PF02033	Ribosome-binding factor A
AL541_20730	PF00009	Elongation factor Tu GTP binding domain
AL541_20730	PF03144	Elongation factor Tu domain 2
AL541_20730	PF04760	Translation initiation factor IF-2, N-terminal region
AL541_20730	PF08364	AL541_20730
AL541_20730	PF11987	Translation-initiation factor 2
AL541_20735	PF08529	NusA N-terminal domain
AL541_20735	PF13184	NusA-like KH domain
AL541_20735	PF14520	Helix-hairpin-helix domain
AL541_20740	PF02576	Uncharacterised BCR, YhbC family COG0779
AL541_20740	PF17384	AL541_20740
AL541_20755	PF03840	Preprotein translocase SecG subunit
AL541_20765	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL541_20765	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL541_20765	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL541_20765	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL541_20770	PF00809	Pterin binding enzyme
AL541_20775	PF00004	ATPase family associated with various cellular activities (AAA)
AL541_20775	PF01434	Peptidase family M41
AL541_20775	PF06480	FtsH Extracellular
AL541_20780	PF01728	FtsJ-like methyltransferase
AL541_20785	PF01985	CRS1 / YhbY (CRM) domain
AL541_20790	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL541_20790	PF03449	Transcription elongation factor, N-terminal
AL541_20795	PF13609	Gram-negative porin
AL541_20800	PF02113	D-Ala-D-Ala carboxypeptidase 3 (S13) family
AL541_20805	PF01769	Divalent cation transporter
AL541_20810	PF00579	tRNA synthetases class I (W and Y)
AL541_20810	PF01479	S4 domain
AL541_20815	PF01551	Peptidase family M23
AL541_20815	PF08525	AL541_20815
AL541_20820	PF00873	AcrB/AcrD/AcrF family
AL541_20825	PF16576	AL541_20825
AL541_20830	PF01521	Iron-sulphur cluster biosynthesis
AL541_20835	PF00202	Aminotransferase class-III
AL541_20840	PF01594	AL541_20840
AL541_20845	PF05175	Methyltransferase small domain
AL541_20845	PF08468	Methyltransferase small domain N-terminal
AL541_20850	PF00072	Response regulator receiver domain
AL541_20850	PF00512	His Kinase A (phospho-acceptor) domain
AL541_20850	PF00672	HAMP domain
AL541_20850	PF00989	PAS fold
AL541_20850	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_20855	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_20860	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_20865	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_20870	PF00005	ABC transporter
AL541_20870	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_20875	PF00005	ABC transporter
AL541_20875	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_20880	PF00759	Glycosyl hydrolase family 9
AL541_20880	PF02927	N-terminal ig-like domain of cellulase
AL541_20885	PF01869	BadF/BadG/BcrA/BcrD ATPase family
AL541_20890	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL541_20890	PF02838	Glycosyl hydrolase family 20, domain 2
AL541_20895	PF06165	Glycosyltransferase family 36
AL541_20895	PF17167	AL541_20895
AL541_20900	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL541_20900	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL541_20900	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL541_20900	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL541_20905	PF00005	ABC transporter
AL541_20905	PF08402	TOBE domain
AL541_20910	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_20915	PF13343	Bacterial extracellular solute-binding protein
AL541_20920	PF00909	Ammonium Transporter Family
AL541_20925	PF00543	Nitrogen regulatory protein P-II
AL541_20930	PF06062	AL541_20930
AL541_20935	PF00330	Aconitase family (aconitate hydratase)
AL541_20935	PF06434	Aconitate hydratase 2 N-terminus
AL541_20935	PF11791	Aconitate B N-terminal domain
AL541_20940	PF01734	Patatin-like phospholipase
AL541_20940	PF07244	Surface antigen variable number repeat
AL541_20945	PF00905	Penicillin binding protein transpeptidase domain
AL541_20945	PF00912	Transglycosylase
AL541_20945	PF14814	Bifunctional transglycosylase second domain
AL541_20950	PF00270	DEAD/DEAH box helicase
AL541_20950	PF00271	Helicase conserved C-terminal domain
AL541_20950	PF04408	Helicase associated domain (HA2)
AL541_20950	PF08482	AL541_20950
AL541_20955	PF03749	Sugar fermentation stimulation protein
AL541_20960	PF01258	Prokaryotic dksA/traR C4-type zinc finger
AL541_20965	PF00749	tRNA synthetases class I (E and Q), catalytic domain
AL541_20970	PF01743	Poly A polymerase head domain
AL541_20970	PF12626	Polymerase A arginine-rich C-terminus
AL541_20970	PF12627	Probable RNA and SrmB- binding site of polymerase A
AL541_20975	PF01288	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
AL541_20980	PF02548	Ketopantoate hydroxymethyltransferase
AL541_20985	PF02569	Pantoate-beta-alanine ligase
AL541_20990	PF03279	AL541_20990
AL541_21000	PF01061	AL541_21000
AL541_21005	PF00005	ABC transporter
AL541_21010	PF00916	AL541_21010
AL541_21010	PF01740	STAS domain
AL541_21015	PF00484	Carbonic anhydrase
AL541_21020	PF00156	Phosphoribosyl transferase domain
AL541_21025	PF00440	Bacterial regulatory proteins, tetR family
AL541_21030	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL541_21030	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_21035	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL541_21035	PF00364	Biotin-requiring enzyme
AL541_21035	PF02817	e3 binding domain
AL541_21040	PF00456	Transketolase, thiamine diphosphate binding domain
AL541_21045	PF00392	Bacterial regulatory proteins, gntR family
AL541_21045	PF07729	FCD domain
AL541_21050	PF01510	N-acetylmuramoyl-L-alanine amidase
AL541_21055	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
AL541_21055	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
AL541_21060	PF00114	Pilin (bacterial filament)
AL541_21060	PF07963	Prokaryotic N-terminal methylation motif
AL541_21065	PF00437	Type II/IV secretion system protein
AL541_21065	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
AL541_21070	PF00482	Type II secretion system (T2SS), protein F
AL541_21075	PF01478	Type IV leader peptidase family
AL541_21075	PF06750	AL541_21075
AL541_21080	PF01121	Dephospho-CoA kinase
AL541_21085	PF07072	Protein of unknown function (DUF1342)
AL541_21090	PF03884	Domain of unknown function (DUF329)
AL541_21095	PF01245	Ribosomal protein L19
AL541_21100	PF01746	tRNA (Guanine-1)-methyltransferase
AL541_21105	PF01782	RimM N-terminal domain
AL541_21105	PF05239	PRC-barrel domain
AL541_21110	PF00886	Ribosomal protein S16
AL541_21115	PF00448	SRP54-type protein, GTPase domain
AL541_21115	PF02881	SRP54-type protein, helical bundle domain
AL541_21115	PF02978	Signal peptide binding domain
AL541_21120	PF01578	AL541_21120
AL541_21125	PF00571	CBS domain
AL541_21125	PF01595	AL541_21125
AL541_21125	PF03471	Transporter associated domain
AL541_21130	PF02664	S-Ribosylhomocysteinase (LuxS)
AL541_21140	PF04262	Glutamate-cysteine ligase
AL541_21145	PF00675	Insulinase (Peptidase family M16)
AL541_21145	PF05193	Peptidase M16 inactive domain
AL541_21150	PF09335	AL541_21150
AL541_21155	PF08240	Alcohol dehydrogenase GroES-like domain
AL541_21155	PF13602	Zinc-binding dehydrogenase
AL541_21160	PF03977	AL541_21160
AL541_21165	PF00364	Biotin-requiring enzyme
AL541_21165	PF00682	HMGL-like
AL541_21165	PF02436	Conserved carboxylase domain
AL541_21170	PF04277	AL541_21170
AL541_21225	PF02599	Global regulator protein family
AL541_21230	PF00696	Amino acid kinase family
AL541_21235	PF01411	tRNA synthetases class II (A)
AL541_21235	PF02272	DHHA1 domain
AL541_21235	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
AL541_21240	PF02631	RecX family
AL541_21245	PF00154	recA bacterial DNA recombination protein
AL541_21250	PF02464	Competence-damaged protein
AL541_21255	PF00488	MutS domain V
AL541_21255	PF01624	MutS domain I
AL541_21255	PF05188	MutS domain II
AL541_21255	PF05190	MutS family domain IV
AL541_21255	PF05192	MutS domain III
AL541_21260	PF00140	Sigma-70 factor, region 1
AL541_21260	PF04539	Sigma-70 region 3
AL541_21260	PF04542	Sigma-70 region 2
AL541_21260	PF04545	Sigma-70, region 4
AL541_21265	PF01476	LysM domain
AL541_21265	PF01551	Peptidase family M23
AL541_21270	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
AL541_21275	PF01975	Survival protein SurE
AL541_21280	PF01142	tRNA pseudouridine synthase D (TruD)
AL541_21285	PF02542	YgbB family
AL541_21290	PF01128	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
AL541_21295	PF04977	Septum formation initiator
AL541_21300	PF00113	Enolase, C-terminal TIM barrel domain
AL541_21300	PF03952	Enolase, N-terminal domain
AL541_21305	PF00117	Glutamine amidotransferase class-I
AL541_21305	PF06418	CTP synthase N-terminus
AL541_21310	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL541_21315	PF02824	TGS domain
AL541_21315	PF04607	Region found in RelA / SpoT proteins
AL541_21315	PF13291	ACT domain
AL541_21315	PF13328	HD domain
AL541_21325	PF01938	TRAM domain
AL541_21325	PF05958	tRNA (Uracil-5-)-methyltransferase
AL541_21335	PF00072	Response regulator receiver domain
AL541_21335	PF00512	His Kinase A (phospho-acceptor) domain
AL541_21335	PF01627	Hpt domain
AL541_21335	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_21335	PF09984	AL541_21335
AL541_21340	PF01648	4'-phosphopantetheinyl transferase superfamily
AL541_21345	PF03740	Pyridoxal phosphate biosynthesis protein PdxJ
AL541_21350	PF02565	Recombination protein O C terminal
AL541_21350	PF11967	Recombination protein O N terminal
AL541_21355	PF01926	50S ribosome-binding GTPase
AL541_21355	PF07650	KH domain
AL541_21360	PF00035	Double-stranded RNA binding motif
AL541_21360	PF14622	Ribonuclease-III-like
AL541_21365	PF00717	Peptidase S24-like
AL541_21365	PF10502	Signal peptidase, peptidase S26
AL541_21370	PF00009	Elongation factor Tu GTP binding domain
AL541_21370	PF00679	Elongation factor G C-terminus
AL541_21370	PF03144	Elongation factor Tu domain 2
AL541_21370	PF06421	GTP-binding protein LepA C-terminus
AL541_21375	PF04246	AL541_21375
AL541_21380	PF03888	MucB/RseB family
AL541_21380	PF17188	AL541_21380
AL541_21385	PF03872	Anti sigma-E protein RseA, N-terminal domain
AL541_21385	PF03873	Anti sigma-E protein RseA, C-terminal domain
AL541_21390	PF04542	Sigma-70 region 2
AL541_21390	PF08281	Sigma-70, region 4
AL541_21400	PF00890	FAD binding domain
AL541_21400	PF02910	Fumarate reductase flavoprotein C-term
AL541_21410	PF03937	Flavinator of succinate dehydrogenase
AL541_21415	PF01571	Aminomethyltransferase folate-binding domain
AL541_21420	PF04073	Aminoacyl-tRNA editing domain
AL541_21425	PF06526	Protein of unknown function (DUF1107)
AL541_21430	PF01494	FAD binding domain
AL541_21435	PF01494	FAD binding domain
AL541_21440	PF03695	Uncharacterised protein family (UPF0149)
AL541_21450	PF05164	Cell division protein ZapA
AL541_21460	PF01812	5-formyltetrahydrofolate cyclo-ligase family
AL541_21465	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
AL541_21470	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL541_21470	PF01842	ACT domain
AL541_21470	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL541_21475	PF04402	Protein of unknown function (DUF541)
AL541_21480	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_21480	PF03466	LysR substrate binding domain
AL541_21485	PF01810	AL541_21485
AL541_21490	PF04073	Aminoacyl-tRNA editing domain
AL541_21495	PF00924	Mechanosensitive ion channel
AL541_21495	PF05552	Conserved TM helix
AL541_21500	PF01116	Fructose-bisphosphate aldolase class-II
AL541_21505	PF00162	Phosphoglycerate kinase
AL541_21510	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL541_21510	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL541_21515	PF00593	TonB dependent receptor
AL541_21515	PF07715	TonB-dependent Receptor Plug Domain
AL541_21520	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_21520	PF03466	LysR substrate binding domain
AL541_21525	PF00456	Transketolase, thiamine diphosphate binding domain
AL541_21525	PF02779	Transketolase, pyrimidine binding domain
AL541_21525	PF02780	Transketolase, C-terminal domain
AL541_21535	PF00438	S-adenosylmethionine synthetase, N-terminal domain
AL541_21535	PF02772	S-adenosylmethionine synthetase, central domain
AL541_21535	PF02773	S-adenosylmethionine synthetase, C-terminal domain
AL541_21540	PF09955	AL541_21540
AL541_21545	PF10263	AL541_21545
AL541_21545	PF17283	AL541_21545
AL541_21550	PF04231	Endonuclease I
AL541_21555	PF04452	RNA methyltransferase
AL541_21560	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
AL541_21560	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
AL541_21565	PF02622	Uncharacterized ACR, COG1678
AL541_21570	PF03652	Uncharacterised protein family (UPF0081)
AL541_21575	PF00437	Type II/IV secretion system protein
AL541_21580	PF00437	Type II/IV secretion system protein
AL541_21585	PF01168	Alanine racemase, N-terminal domain
AL541_21590	PF03807	NADP oxidoreductase coenzyme F420-dependent
AL541_21590	PF14748	Pyrroline-5-carboxylate reductase dimerisation
AL541_21595	PF02325	AL541_21595
AL541_21600	PF02594	Uncharacterised ACR, YggU family COG1872
AL541_21605	PF14467	Domain of unknown function (DUF4426)
AL541_21610	PF01725	Ham1 family
AL541_21615	PF04055	Radical SAM superfamily
AL541_21615	PF06969	HemN C-terminal domain
AL541_21620	PF04960	Glutaminase
AL541_21625	PF01170	Putative RNA methylase family UPF0020
AL541_21630	PF02390	Putative methyltransferase
AL541_21635	PF00633	Helix-hairpin-helix motif
AL541_21635	PF00730	HhH-GPD superfamily base excision DNA repair protein
AL541_21635	PF10576	Iron-sulfur binding domain of endonuclease III
AL541_21635	PF14815	NUDIX domain
AL541_21640	PF04362	Bacterial Fe(2+) trafficking
AL541_21645	PF01464	Transglycosylase SLT domain
AL541_21645	PF11873	Domain of unknown function (DUF3393)
AL541_21685	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_21685	PF17200	AL541_21685
AL541_21720	PF00171	Aldehyde dehydrogenase family
AL541_21765	PF01966	HD domain
AL541_21765	PF11871	AL541_21765
AL541_21770	PF00356	Bacterial regulatory proteins, lacI family
AL541_21770	PF13377	Periplasmic binding protein-like domain
AL541_21775	PF04794	YdjC-like protein
AL541_21780	PF02056	Family 4 glycosyl hydrolase
AL541_21780	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AL541_21785	PF02255	PTS system, Lactose/Cellobiose specific IIA subunit
AL541_21790	PF02378	Phosphotransferase system, EIIC
AL541_21795	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL541_21800	PF01522	Polysaccharide deacetylase
AL541_21805	PF01420	Type I restriction modification DNA specificity domain
AL541_21805	PF02384	N-6 DNA Methylase
AL541_21840	PF00589	Phage integrase family
AL541_21855	PF08220	DeoR-like helix-turn-helix domain
AL541_21855	PF13280	AL541_21855
AL541_21860	PF10980	Protein of unknown function (DUF2787)
AL541_21875	PF00589	Phage integrase family
AL541_21875	PF13356	Domain of unknown function (DUF4102)
AL541_21885	PF05488	PAAR motif
AL541_21885	PF13930	DNA/RNA non-specific endonuclease
AL541_21895	PF00106	short chain dehydrogenase
AL541_21900	PF10011	Predicted membrane protein (DUF2254)
AL541_21905	PF06271	AL541_21905
AL541_21910	PF03739	AL541_21910
AL541_21915	PF03739	AL541_21915
AL541_21920	PF00883	Cytosol aminopeptidase family, catalytic domain
AL541_21920	PF02789	Cytosol aminopeptidase family, N-terminal domain
AL541_21925	PF04364	DNA polymerase III chi subunit, HolC
AL541_21930	PF00133	tRNA synthetases class I (I, L, M and V)
AL541_21930	PF08264	Anticodon-binding domain of tRNA
AL541_21930	PF10458	Valyl tRNA synthetase tRNA binding arm
AL541_21935	PF09834	AL541_21935
AL541_21940	PF00583	Acetyltransferase (GNAT) family
AL541_21940	PF12802	MarR family
AL541_21950	PF06877	Regulator of ribonuclease activity B
AL541_21955	PF02274	Amidinotransferase
AL541_21960	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL541_21960	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL541_21970	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
AL541_21970	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
AL541_21975	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
AL541_21975	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
AL541_21980	PF01042	Endoribonuclease L-PSP
AL541_21985	PF01553	Acyltransferase
AL541_21990	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
AL541_21995	PF01722	BolA-like protein
AL541_22000	PF13466	STAS domain
AL541_22005	PF05494	Toluene tolerance, Ttg2
AL541_22010	PF02470	AL541_22010
AL541_22015	PF02405	AL541_22015
AL541_22020	PF00005	ABC transporter
AL541_22025	PF01699	Sodium/calcium exchanger protein
AL541_22030	PF00571	CBS domain
AL541_22030	PF01380	SIS domain
AL541_22035	PF06835	Lipopolysaccharide-assembly, LptC-related
AL541_22040	PF03968	OstA-like protein
AL541_22045	PF00005	ABC transporter
AL541_22045	PF12399	Branched-chain amino acid ATP-binding cassette transporter
AL541_22050	PF00309	AL541_22050
AL541_22050	PF04552	Sigma-54, DNA binding domain
AL541_22050	PF04963	Sigma-54 factor, core binding domain
AL541_22055	PF02482	Sigma 54 modulation protein / S30EA ribosomal protein
AL541_22060	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL541_22065	PF03668	AL541_22065
AL541_22070	PF00381	PTS HPr component phosphorylation site
AL541_22075	PF00571	CBS domain
AL541_22075	PF01769	Divalent cation transporter
AL541_22075	PF03448	MgtE intracellular N domain
AL541_22080	PF01523	Putative modulator of DNA gyrase
AL541_22085	PF04751	Protein of unknown function (DUF615)
AL541_22090	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL541_22090	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL541_22095	PF00849	RNA pseudouridylate synthase
AL541_22105	PF00176	SNF2 family N-terminal domain
AL541_22105	PF00271	Helicase conserved C-terminal domain
AL541_22105	PF12137	RNA polymerase recycling family C-terminal
AL541_22110	PF02562	PhoH-like protein
AL541_22110	PF13638	PIN domain
AL541_22115	PF01523	Putative modulator of DNA gyrase
AL541_22120	PF00795	Carbon-nitrogen hydrolase
AL541_22125	PF13116	AL541_22125
AL541_22125	PF13502	AL541_22125
AL541_22130	PF00575	S1 RNA binding domain
AL541_22130	PF10150	Ribonuclease E/G family
AL541_22135	PF02545	Maf-like protein
AL541_22140	PF04093	AL541_22140
AL541_22145	PF04085	rod shape-determining protein MreC
AL541_22150	PF06723	MreB/Mbl protein
AL541_22165	PF07963	Prokaryotic N-terminal methylation motif
AL541_22170	PF07963	Prokaryotic N-terminal methylation motif
AL541_22185	PF07963	Prokaryotic N-terminal methylation motif
AL541_22195	PF00482	Type II secretion system (T2SS), protein F
AL541_22200	PF00437	Type II/IV secretion system protein
AL541_22200	PF05157	Type II secretion system (T2SS), protein E, N-terminal domain
AL541_22210	PF13401	AAA domain
AL541_22215	PF00263	AL541_22215
AL541_22215	PF07655	AL541_22215
AL541_22225	PF04612	Type II secretion system (T2SS), protein M
AL541_22235	PF00563	EAL domain
AL541_22235	PF00990	GGDEF domain
AL541_22235	PF17157	AL541_22235
AL541_22240	PF00436	Single-strand binding protein family
AL541_22245	PF00196	Bacterial regulatory proteins, luxR family
AL541_22250	PF00483	Nucleotidyl transferase
AL541_22255	PF00005	ABC transporter
AL541_22260	PF04932	AL541_22260
AL541_22260	PF11846	AL541_22260
AL541_22260	PF15864	AL541_22260
AL541_22265	PF00266	Aminotransferase class-V
AL541_22275	PF00696	Amino acid kinase family
AL541_22280	PF00809	Pterin binding enzyme
AL541_22280	PF02310	B12 binding domain
AL541_22280	PF02574	Homocysteine S-methyltransferase
AL541_22280	PF02607	B12 binding domain
AL541_22280	PF02965	Vitamin B12 dependent methionine synthase, activation domain
AL541_22285	PF00999	Sodium/hydrogen exchanger family
AL541_22345	PF01507	Phosphoadenosine phosphosulfate reductase family
AL541_22350	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL541_22350	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL541_22355	PF00175	Oxidoreductase NAD-binding domain
AL541_22355	PF00258	Flavodoxin
AL541_22355	PF00667	FAD binding domain
AL541_22365	PF13505	Outer membrane protein beta-barrel domain
AL541_22370	PF09583	AL541_22370
AL541_22375	PF01207	Dihydrouridine synthase (Dus)
AL541_22380	PF01475	Ferric uptake regulator family
AL541_22385	PF13690	Chemotaxis phosphatase CheX
AL541_22390	PF00342	Phosphoglucose isomerase
AL541_22395	PF01894	Uncharacterised protein family UPF0047
AL541_22400	PF00842	Alanine racemase, C-terminal domain
AL541_22400	PF01168	Alanine racemase, N-terminal domain
AL541_22405	PF00772	DnaB-like helicase N terminal domain
AL541_22405	PF03796	DnaB-like helicase C terminal domain
AL541_22410	PF04338	Protein of unknown function, DUF481
AL541_22415	PF01281	Ribosomal protein L9, N-terminal domain
AL541_22415	PF03948	Ribosomal protein L9, C-terminal domain
AL541_22420	PF01084	Ribosomal protein S18
AL541_22425	PF00436	Single-strand binding protein family
AL541_22430	PF01250	Ribosomal protein S6
AL541_22435	PF00834	Ribulose-phosphate 3 epimerase family
AL541_22440	PF02086	D12 class N6 adenine-specific DNA methyltransferase
AL541_22445	PF05036	Sporulation related domain
AL541_22445	PF13401	AAA domain
AL541_22450	PF01761	3-dehydroquinate synthase
AL541_22455	PF01202	Shikimate kinase
AL541_22460	PF00263	AL541_22460
AL541_22460	PF03958	Bacterial type II/III secretion system short domain
AL541_22465	PF04351	Pilus assembly protein, PilP
AL541_22470	PF04350	Pilus assembly protein, PilO
AL541_22475	PF05137	AL541_22475
AL541_22480	PF11104	Type IV pilus assembly protein PilM;
AL541_22485	PF00905	Penicillin binding protein transpeptidase domain
AL541_22485	PF00912	Transglycosylase
AL541_22485	PF17092	AL541_22485
AL541_22490	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_22490	PF03466	LysR substrate binding domain
AL541_22495	PF00462	Glutaredoxin
AL541_22495	PF08534	Redoxin
AL541_22500	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL541_22500	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_22505	PF12292	AL541_22505
AL541_22510	PF00206	Lyase
AL541_22510	PF00583	Acetyltransferase (GNAT) family
AL541_22510	PF14698	Argininosuccinate lyase C-terminal
AL541_22515	PF00764	Arginosuccinate synthase
AL541_22520	PF00696	Amino acid kinase family
AL541_22525	PF01118	Semialdehyde dehydrogenase, NAD binding domain
AL541_22525	PF02774	Semialdehyde dehydrogenase, dimerisation domain
AL541_22530	PF01546	Peptidase family M20/M25/M40
AL541_22530	PF07687	Peptidase dimerisation domain
AL541_22535	PF00311	Phosphoenolpyruvate carboxylase
AL541_22540	PF03551	Transcriptional regulator PadR-like family
AL541_22540	PF10400	Virulence activator alpha C-term
AL541_22545	PF02219	Methylenetetrahydrofolate reductase
AL541_22550	PF00696	Amino acid kinase family
AL541_22550	PF00742	Homoserine dehydrogenase
AL541_22550	PF03447	Homoserine dehydrogenase, NAD binding domain
AL541_22555	PF01053	Cys/Met metabolism PLP-dependent enzyme
AL541_22560	PF01340	Met Apo-repressor, MetJ
AL541_22565	PF00390	Malic enzyme, N-terminal domain
AL541_22565	PF03949	Malic enzyme, NAD binding domain
AL541_22570	PF00210	Ferritin-like domain
AL541_22575	PF04324	BFD-like [2Fe-2S] binding domain
AL541_22580	PF00009	Elongation factor Tu GTP binding domain
AL541_22580	PF03143	Elongation factor Tu C-terminal domain
AL541_22580	PF03144	Elongation factor Tu domain 2
AL541_22585	PF00009	Elongation factor Tu GTP binding domain
AL541_22585	PF00679	Elongation factor G C-terminus
AL541_22585	PF03144	Elongation factor Tu domain 2
AL541_22585	PF03764	Elongation factor G, domain IV
AL541_22585	PF14492	Elongation Factor G, domain II
AL541_22590	PF00177	Ribosomal protein S7p/S5e
AL541_22595	PF00164	Ribosomal protein S12/S23
AL541_22600	PF04077	DsrH like protein
AL541_22605	PF02635	DsrE/DsrF-like family
AL541_22610	PF02635	DsrE/DsrF-like family
AL541_22615	PF08348	AL541_22615
AL541_22615	PF13309	AL541_22615
AL541_22620	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL541_22620	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL541_22625	PF13360	PQQ-like domain
AL541_22630	PF04102	SlyX
AL541_22635	PF01112	Asparaginase
AL541_22645	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL541_22650	PF09526	AL541_22650
AL541_22655	PF00999	Sodium/hydrogen exchanger family
AL541_22655	PF02254	TrkA-N domain
AL541_22660	PF02525	Flavodoxin-like fold
AL541_22665	PF00005	ABC transporter
AL541_22665	PF12848	ABC transporter
AL541_22670	PF09523	AL541_22670
AL541_22675	PF00561	alpha/beta hydrolase fold
AL541_22680	PF06794	Uncharacterised protein family (UPF0270)
AL541_22685	PF00485	Phosphoribulokinase / Uridine kinase family
AL541_22690	PF00027	Cyclic nucleotide-binding domain
AL541_22690	PF00325	Bacterial regulatory proteins, crp family
AL541_22695	PF07063	Domain of unknown function (DUF1338)
AL541_22700	PF00171	Aldehyde dehydrogenase family
AL541_22705	PF04958	Arginine N-succinyltransferase beta subunit
AL541_22710	PF00202	Aminotransferase class-III
AL541_22715	PF00117	Glutamine amidotransferase class-I
AL541_22720	PF00932	Lamin Tail Domain
AL541_22720	PF03372	Endonuclease/Exonuclease/phosphatase family
AL541_22730	PF00579	tRNA synthetases class I (W and Y)
AL541_22735	PF13419	Haloacid dehalogenase-like hydrolase
AL541_22740	PF00588	SpoU rRNA Methylase family
AL541_22740	PF08032	RNA 2'-O ribose methyltransferase substrate binding
AL541_22745	PF00575	S1 RNA binding domain
AL541_22745	PF00773	RNB domain
AL541_22745	PF08206	Ribonuclease B OB domain
AL541_22745	PF08461	Ribonuclease R winged-helix domain
AL541_22750	PF02082	Transcriptional regulator
AL541_22755	PF00042	Globin
AL541_22755	PF00175	Oxidoreductase NAD-binding domain
AL541_22755	PF00970	Oxidoreductase FAD-binding domain
AL541_22760	PF08238	Sel1 repeat
AL541_22770	PF00709	Adenylosuccinate synthetase
AL541_22775	PF09838	AL541_22775
AL541_22780	PF01145	SPFH domain / Band 7 family
AL541_22785	PF01145	SPFH domain / Band 7 family
AL541_22785	PF12221	AL541_22785
AL541_22790	PF01926	50S ribosome-binding GTPase
AL541_22790	PF13167	AL541_22790
AL541_22790	PF16360	AL541_22790
AL541_22795	PF17209	AL541_22795
AL541_22800	PF01715	IPP transferase
AL541_22805	PF01119	DNA mismatch repair protein, C-terminal domain
AL541_22805	PF08676	MutL C terminal dimerisation domain
AL541_22805	PF13589	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_22810	PF01476	LysM domain
AL541_22810	PF01520	N-acetylmuramoyl-L-alanine amidase
AL541_22810	PF11741	AMIN domain
AL541_22815	PF02367	Uncharacterised P-loop hydrolase UPF0079
AL541_22825	PF08331	AL541_22825
AL541_22825	PF13484	AL541_22825
AL541_22890	PF00929	Exonuclease
AL541_22895	PF03193	Protein of unknown function, DUF258
AL541_22900	PF02666	AL541_22900
AL541_22905	PF00939	Sodium:sulfate symporter transmembrane region
AL541_22910	PF00892	EamA-like transporter family
AL541_22915	PF01676	Metalloenzyme superfamily
AL541_22915	PF06415	BPG-independent PGAM N-terminus (iPGM_N)
AL541_22920	PF00581	Rhodanese-like domain
AL541_22925	PF02556	Preprotein translocase subunit SecB
AL541_22930	PF01210	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
AL541_22930	PF07479	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
AL541_22935	PF00132	Bacterial transferase hexapeptide (six repeats)
AL541_22935	PF06426	Serine acetyltransferase, N-terminal
AL541_22940	PF01551	Peptidase family M23
AL541_22950	PF00440	Bacterial regulatory proteins, tetR family
AL541_22950	PF13972	Bacterial transcriptional repressor
AL541_22955	PF04892	AL541_22955
AL541_22960	PF00152	tRNA synthetases class II (D, K and N)
AL541_22965	PF00890	FAD binding domain
AL541_22965	PF02910	Fumarate reductase flavoprotein C-term
AL541_22970	PF13085	2Fe-2S iron-sulfur cluster binding domain
AL541_22970	PF13183	4Fe-4S dicluster domain
AL541_22975	PF02300	Fumarate reductase subunit C
AL541_22980	PF02313	Fumarate reductase subunit D
AL541_22985	PF01145	SPFH domain / Band 7 family
AL541_22990	PF01132	Elongation factor P (EF-P) OB domain
AL541_22990	PF08207	Elongation factor P (EF-P) KOW-like domain
AL541_22990	PF09285	Elongation factor P, C-terminal
AL541_22995	PF04055	Radical SAM superfamily
AL541_22995	PF13353	4Fe-4S single cluster domain
AL541_23000	PF02308	AL541_23000
AL541_23010	PF00118	TCP-1/cpn60 chaperonin family
AL541_23015	PF00166	Chaperonin 10 Kd subunit
AL541_23020	PF01554	MatE
AL541_23025	PF00365	Phosphofructokinase
AL541_23030	PF01545	Cation efflux family
AL541_23030	PF16916	AL541_23030
AL541_23035	PF07813	LTXXQ motif family protein
AL541_23040	PF00072	Response regulator receiver domain
AL541_23040	PF00486	Transcriptional regulatory protein, C terminal
AL541_23045	PF00512	His Kinase A (phospho-acceptor) domain
AL541_23045	PF00672	HAMP domain
AL541_23045	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_23045	PF16527	AL541_23045
AL541_23050	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
AL541_23050	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
AL541_23055	PF00588	SpoU rRNA Methylase family
AL541_23060	PF04186	AL541_23060
AL541_23065	PF00206	Lyase
AL541_23065	PF10415	Fumarase C C-terminus
AL541_23070	PF03605	AL541_23070
AL541_23075	PF02683	AL541_23075
AL541_23075	PF11412	Disulphide bond corrector protein DsbC
AL541_23075	PF13899	Thioredoxin-like
AL541_23080	PF00072	Response regulator receiver domain
AL541_23080	PF00196	Bacterial regulatory proteins, luxR family
AL541_23085	PF00999	Sodium/hydrogen exchanger family
AL541_23085	PF02080	TrkA-C domain
AL541_23085	PF03471	Transporter associated domain
AL541_23090	PF13937	AL541_23090
AL541_23095	PF00474	Sodium:solute symporter family
AL541_23110	PF00206	Lyase
AL541_23110	PF10415	Fumarase C C-terminus
AL541_23115	PF00072	Response regulator receiver domain
AL541_23115	PF00512	His Kinase A (phospho-acceptor) domain
AL541_23115	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_23115	PF12860	AL541_23115
AL541_23120	PF12832	MFS_1 like family
AL541_23125	PF00027	Cyclic nucleotide-binding domain
AL541_23125	PF03445	AL541_23125
AL541_23125	PF10335	AL541_23125
AL541_23130	PF00929	Exonuclease
AL541_23135	PF00501	AMP-binding enzyme
AL541_23135	PF13193	AMP-binding enzyme C-terminal domain
AL541_23135	PF16177	AL541_23135
AL541_23140	PF01220	Dehydroquinase class II
AL541_23145	PF00364	Biotin-requiring enzyme
AL541_23150	PF00289	Carbamoyl-phosphate synthase L chain, N-terminal domain
AL541_23150	PF02785	Biotin carboxylase C-terminal domain
AL541_23150	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL541_23160	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
AL541_23165	PF01207	Dihydrouridine synthase (Dus)
AL541_23170	PF02954	Bacterial regulatory protein, Fis family
AL541_23175	PF07690	Major Facilitator Superfamily
AL541_23180	PF00005	ABC transporter
AL541_23180	PF12848	ABC transporter
AL541_23235	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL541_23235	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AL541_23235	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AL541_23240	PF13520	Amino acid permease
AL541_23250	PF00486	Transcriptional regulatory protein, C terminal
AL541_23255	PF00376	MerR family regulatory protein
AL541_23255	PF09278	MerR, DNA binding
AL541_23265	PF01808	AICARFT/IMPCHase bienzyme
AL541_23265	PF02142	MGS-like domain
AL541_23270	PF01071	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
AL541_23270	PF02843	Phosphoribosylglycinamide synthetase, C domain
AL541_23270	PF02844	Phosphoribosylglycinamide synthetase, N domain
AL541_23275	PF07356	AL541_23275
AL541_23280	PF00216	Bacterial DNA-binding protein
AL541_23285	PF00571	CBS domain
AL541_23285	PF01595	AL541_23285
AL541_23290	PF04222	Protein of unknown function (DUF416)
AL541_23295	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL541_23300	PF03167	Uracil DNA glycosylase superfamily
AL541_23305	PF01208	Uroporphyrinogen decarboxylase (URO-D)
AL541_23310	PF00293	NUDIX domain
AL541_23310	PF09297	NADH pyrophosphatase zinc ribbon domain
AL541_23315	PF04353	Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
AL541_23320	PF00623	RNA polymerase Rpb1, domain 2
AL541_23320	PF04983	RNA polymerase Rpb1, domain 3
AL541_23320	PF04997	RNA polymerase Rpb1, domain 1
AL541_23320	PF04998	RNA polymerase Rpb1, domain 5
AL541_23320	PF05000	RNA polymerase Rpb1, domain 4
AL541_23325	PF00562	RNA polymerase Rpb2, domain 6
AL541_23325	PF04560	RNA polymerase Rpb2, domain 7
AL541_23325	PF04561	RNA polymerase Rpb2, domain 2
AL541_23325	PF04563	RNA polymerase beta subunit
AL541_23325	PF04565	RNA polymerase Rpb2, domain 3
AL541_23325	PF10385	RNA polymerase beta subunit external 1 domain
AL541_23330	PF00542	Ribosomal protein L7/L12 C-terminal domain
AL541_23330	PF16320	AL541_23330
AL541_23335	PF00466	Ribosomal protein L10
AL541_23340	PF00687	Ribosomal protein L1p/L10e family
AL541_23345	PF00298	Ribosomal protein L11, RNA binding domain
AL541_23345	PF03946	Ribosomal protein L11, N-terminal domain
AL541_23350	PF00467	KOW motif
AL541_23350	PF02357	Transcription termination factor nusG
AL541_23355	PF00584	SecE/Sec61-gamma subunits of protein translocation complex
AL541_23365	PF00009	Elongation factor Tu GTP binding domain
AL541_23365	PF03143	Elongation factor Tu C-terminal domain
AL541_23365	PF03144	Elongation factor Tu domain 2
AL541_23395	PF00485	Phosphoribulokinase / Uridine kinase family
AL541_23400	PF02237	Biotin protein ligase C terminal domain
AL541_23400	PF03099	Biotin/lipoate A/B protein ligase family
AL541_23400	PF08279	HTH domain
AL541_23405	PF01565	FAD binding domain
AL541_23405	PF02873	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
AL541_23410	PF13508	Acetyltransferase (GNAT) domain
AL541_23415	PF13091	PLD-like domain
AL541_23475	PF00076	RNA recognition motif
AL541_23480	PF01177	Asp/Glu/Hydantoin racemase
AL541_23485	PF01902	ATP-binding region
AL541_23490	PF00593	TonB dependent receptor
AL541_23490	PF07715	TonB-dependent Receptor Plug Domain
AL541_23495	PF05958	tRNA (Uracil-5-)-methyltransferase
AL541_23500	PF07226	AL541_23500
AL541_23505	PF00440	Bacterial regulatory proteins, tetR family
AL541_23510	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL541_23510	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_23515	PF01554	MatE
AL541_23520	PF04072	Leucine carboxyl methyltransferase
AL541_23530	PF00717	Peptidase S24-like
AL541_23530	PF01726	LexA DNA binding domain
AL541_23540	PF01553	Acyltransferase
AL541_23545	PF01040	UbiA prenyltransferase family
AL541_23550	PF04345	Chorismate lyase
AL541_23555	PF03748	AL541_23555
AL541_23560	PF01694	Rhomboid family
AL541_23560	PF12122	Protein of unknown function (DUF3582)
AL541_23565	PF00581	Rhodanese-like domain
AL541_23575	PF00140	Sigma-70 factor, region 1
AL541_23575	PF04542	Sigma-70 region 2
AL541_23575	PF04545	Sigma-70, region 4
AL541_23585	PF00005	ABC transporter
AL541_23590	PF00448	SRP54-type protein, GTPase domain
AL541_23590	PF02881	SRP54-type protein, helical bundle domain
AL541_23595	PF03602	Conserved hypothetical protein 95
AL541_23600	PF06611	AL541_23600
AL541_23605	PF01914	AL541_23605
AL541_23610	PF10678	AL541_23610
AL541_23615	PF07947	AL541_23615
AL541_23625	PF13643	AL541_23625
AL541_23630	PF10694	Protein of unknown function (DUF2500)
AL541_23635	PF01757	AL541_23635
AL541_23640	PF07690	Major Facilitator Superfamily
AL541_23645	PF05706	Cyclin-dependent kinase inhibitor 3 (CDKN3)
AL541_23650	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL541_23650	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL541_23655	PF01022	Bacterial regulatory protein, arsR family
AL541_23660	PF00563	EAL domain
AL541_23660	PF08668	HDOD domain
AL541_23665	PF01810	AL541_23665
AL541_23670	PF12146	Putative lysophospholipase
AL541_23675	PF08282	haloacid dehalogenase-like hydrolase
AL541_23680	PF01878	EVE domain
AL541_23690	PF03942	AL541_23690
AL541_23695	PF00563	EAL domain
AL541_23695	PF00990	GGDEF domain
AL541_23695	PF08495	AL541_23695
AL541_23695	PF10442	AL541_23695
AL541_23700	PF13419	Haloacid dehalogenase-like hydrolase
AL541_23705	PF00589	Phage integrase family
AL541_23705	PF02899	Phage integrase, N-terminal SAM-like domain
AL541_23710	PF04340	Protein of unknown function, DUF484
AL541_23715	PF01678	Diaminopimelate epimerase
AL541_23720	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL541_23720	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL541_23730	PF01491	Frataxin-like domain
AL541_23735	PF01295	AL541_23735
AL541_23735	PF12633	AL541_23735
AL541_23740	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
AL541_23740	PF03900	Porphobilinogen deaminase, C-terminal domain
AL541_23745	PF02602	Uroporphyrinogen-III synthase HemD
AL541_23750	PF04375	AL541_23750
AL541_23755	PF07219	AL541_23755
AL541_23795	PF00175	Oxidoreductase NAD-binding domain
AL541_23800	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL541_23805	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
AL541_23815	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL541_23815	PF07497	Rho termination factor, RNA-binding domain
AL541_23815	PF07498	Rho termination factor, N-terminal domain
AL541_23820	PF00085	Thioredoxin
AL541_23825	PF00270	DEAD/DEAH box helicase
AL541_23825	PF00271	Helicase conserved C-terminal domain
AL541_23830	PF02541	Ppx/GppA phosphatase family
AL541_23835	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL541_23835	PF04321	RmlD substrate binding domain
AL541_23840	PF02592	AL541_23840
AL541_23850	PF12305	AL541_23850
AL541_23855	PF00270	DEAD/DEAH box helicase
AL541_23855	PF00271	Helicase conserved C-terminal domain
AL541_23855	PF00570	HRDC domain
AL541_23855	PF09382	RQC domain
AL541_23855	PF16124	AL541_23855
AL541_23860	PF00892	EamA-like transporter family
AL541_23865	PF02311	AraC-like ligand binding domain
AL541_23865	PF12833	Helix-turn-helix domain
AL541_23870	PF01810	AL541_23870
AL541_23875	PF01019	Gamma-glutamyltranspeptidase
AL541_23885	PF00580	UvrD/REP helicase N-terminal domain
AL541_23885	PF13361	UvrD-like helicase C-terminal domain
AL541_23890	PF10048	AL541_23890
AL541_23895	PF05114	Protein of unknown function (DUF692)
AL541_23900	PF09836	Uncharacterized protein conserved in bacteria (DUF2063)
AL541_23905	PF07681	AL541_23905
AL541_23915	PF07690	Major Facilitator Superfamily
AL541_23920	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_23920	PF03466	LysR substrate binding domain
AL541_23925	PF00557	Metallopeptidase family M24
AL541_23925	PF01321	Creatinase/Prolidase N-terminal domain
AL541_23925	PF16188	AL541_23925
AL541_23925	PF16189	AL541_23925
AL541_23930	PF04055	Radical SAM superfamily
AL541_23930	PF06968	Biotin and Thiamin Synthesis associated domain
AL541_23935	PF05690	Thiazole biosynthesis protein ThiG
AL541_23940	PF02597	ThiS family
AL541_23945	PF00899	ThiF family
AL541_23950	PF02581	Thiamine monophosphate synthase/TENI
AL541_23955	PF01964	ThiC family
AL541_23955	PF13667	ThiC-associated domain
AL541_23960	PF02537	AL541_23960
AL541_23965	PF00394	Multicopper oxidase
AL541_23965	PF07731	Multicopper oxidase
AL541_23965	PF07732	Multicopper oxidase
AL541_23965	PF10518	TAT (twin-arginine translocation) pathway signal sequence
AL541_24010	PF00132	Bacterial transferase hexapeptide (six repeats)
AL541_24015	PF07369	Protein of unknown function (DUF1488)
AL541_24020	PF01488	Shikimate / quinate 5-dehydrogenase
AL541_24020	PF08501	Shikimate dehydrogenase substrate binding domain
AL541_24025	PF01218	Coproporphyrinogen III oxidase
AL541_24030	PF01300	Telomere recombination
AL541_24035	PF00731	AIR carboxylase
AL541_24040	PF02222	ATP-grasp domain
AL541_24045	PF01396	AL541_24045
AL541_24055	PF04361	AL541_24055
AL541_24060	PF02481	DNA recombination-mediator protein A
AL541_24065	PF01476	LysM domain
AL541_24070	PF01327	Polypeptide deformylase
AL541_24075	PF00551	Formyl transferase
AL541_24075	PF02911	Formyl transferase, C-terminal domain
AL541_24080	PF01029	NusB family
AL541_24080	PF01189	NOL1/NOP2/sun family
AL541_24085	PF02080	TrkA-C domain
AL541_24085	PF02254	TrkA-N domain
AL541_24090	PF02386	Cation transport protein
AL541_24095	PF11355	AL541_24095
AL541_24100	PF03006	AL541_24100
AL541_24105	PF07070	AL541_24105
AL541_24115	PF06288	Protein of unknown function (DUF1040)
AL541_24120	PF11614	IG-like fold at C-terminal of FixG, putative oxidoreductase
AL541_24120	PF12801	AL541_24120
AL541_24120	PF13746	4Fe-4S dicluster domain
AL541_24125	PF01636	Phosphotransferase enzyme family
AL541_24130	PF01323	DSBA-like thioredoxin domain
AL541_24135	PF01553	Acyltransferase
AL541_24140	PF11059	AL541_24140
AL541_24145	PF01078	Magnesium chelatase, subunit ChlI
AL541_24145	PF13335	AL541_24145
AL541_24145	PF13541	Subunit ChlI of Mg-chelatase
AL541_24150	PF00205	Thiamine pyrophosphate enzyme, central domain
AL541_24150	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
AL541_24150	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
AL541_24155	PF13710	ACT domain
AL541_24160	PF01063	Aminotransferase class IV
AL541_24165	PF00920	Dehydratase family
AL541_24170	PF00291	Pyridoxal-phosphate dependent enzyme
AL541_24170	PF00585	C-terminal regulatory domain of Threonine dehydratase
AL541_24175	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_24175	PF03466	LysR substrate binding domain
AL541_24180	PF07690	Major Facilitator Superfamily
AL541_24185	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_24190	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_24195	PF00132	Bacterial transferase hexapeptide (six repeats)
AL541_24195	PF12804	MobA-like NTP transferase domain
AL541_24200	PF00401	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
AL541_24200	PF02823	ATP synthase, Delta/Epsilon chain, beta-sandwich domain
AL541_24205	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL541_24205	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL541_24210	PF00231	ATP synthase
AL541_24215	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
AL541_24215	PF00306	ATP synthase alpha/beta chain, C terminal domain
AL541_24215	PF02874	ATP synthase alpha/beta family, beta-barrel domain
AL541_24220	PF00213	ATP synthase delta (OSCP) subunit
AL541_24225	PF00430	ATP synthase B/B' CF(0)
AL541_24230	PF00137	ATP synthase subunit C
AL541_24235	PF00119	ATP synthase A chain
AL541_24240	PF03899	AL541_24240
AL541_24245	PF02195	ParB-like nuclease domain
AL541_24250	PF13614	AAA domain
AL541_24255	PF02527	rRNA small subunit methyltransferase G
AL541_24260	PF01134	Glucose inhibited division protein A
AL541_24260	PF13932	GidA associated domain 3
AL541_24265	PF00258	Flavodoxin
AL541_24270	PF01926	50S ribosome-binding GTPase
AL541_24270	PF10396	GTP-binding protein TrmE N-terminus
AL541_24270	PF12631	Catalytic cysteine-containing C-terminus of GTPase, MnmE
AL541_24275	PF02096	60Kd inner membrane protein
AL541_24275	PF14849	YidC periplasmic domain
AL541_24280	PF01809	AL541_24280
AL541_24285	PF00825	Ribonuclease P
AL541_24290	PF00468	Ribosomal protein L34
AL541_24295	PF00005	ABC transporter
AL541_24300	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_24305	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL541_24315	PF00308	Bacterial dnaA  protein
AL541_24315	PF08299	Bacterial dnaA protein helix-turn-helix
AL541_24315	PF11638	DnaA N-terminal domain
AL541_24320	PF00712	DNA polymerase III beta subunit, N-terminal domain
AL541_24320	PF02767	DNA polymerase III beta subunit, central domain
AL541_24320	PF02768	DNA polymerase III beta subunit, C-terminal domain
AL541_24325	PF02463	RecF/RecN/SMC N terminal domain
AL541_24330	PF00204	DNA gyrase B
AL541_24330	PF00986	DNA gyrase B subunit, carboxyl terminus
AL541_24330	PF01751	Toprim domain
AL541_24330	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_24340	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL541_24350	PF00011	Hsp20/alpha crystallin family
AL541_24355	PF00155	Aminotransferase class I and II
AL541_24360	PF00128	Alpha amylase, catalytic domain
AL541_24365	PF02092	AL541_24365
AL541_24365	PF05746	DALR anticodon binding domain
AL541_24370	PF02091	Glycyl-tRNA synthetase alpha subunit
AL541_24375	PF01169	AL541_24375
AL541_24385	PF01206	Sulfurtransferase TusA
AL541_24395	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_24395	PF03466	LysR substrate binding domain
AL541_24400	PF00107	Zinc-binding dehydrogenase
AL541_24400	PF08240	Alcohol dehydrogenase GroES-like domain
AL541_24405	PF00108	Thiolase, N-terminal domain
AL541_24405	PF02803	Thiolase, C-terminal domain
AL541_24410	PF00378	Enoyl-CoA hydratase/isomerase family
AL541_24410	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
AL541_24410	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
AL541_24415	PF01205	Uncharacterized protein family UPF0029
AL541_24415	PF09186	Domain of unknown function (DUF1949)
AL541_24420	PF02386	Cation transport protein
AL541_24425	PF12724	Flavodoxin domain
AL541_24465	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_24465	PF03466	LysR substrate binding domain
AL541_24470	PF01450	Acetohydroxy acid isomeroreductase, catalytic domain
AL541_24470	PF07991	Acetohydroxy acid isomeroreductase, catalytic domain
AL541_24475	PF04380	AL541_24475
AL541_24480	PF00873	AcrB/AcrD/AcrF family
AL541_24485	PF16576	AL541_24485
AL541_24490	PF00440	Bacterial regulatory proteins, tetR family
AL541_24495	PF00580	UvrD/REP helicase N-terminal domain
AL541_24495	PF13361	UvrD-like helicase C-terminal domain
AL541_24500	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL541_24530	PF13419	Haloacid dehalogenase-like hydrolase
AL541_24540	PF00005	ABC transporter
AL541_24540	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_24545	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_24550	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_24555	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_24555	PF12911	AL541_24555
AL541_24565	PF05036	Sporulation related domain
AL541_24580	PF07638	ECF sigma factor
AL541_24590	PF00069	Protein kinase domain
AL541_24595	PF00356	Bacterial regulatory proteins, lacI family
AL541_24595	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL541_24600	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_24600	PF03466	LysR substrate binding domain
AL541_24605	PF00893	Small Multidrug Resistance protein
AL541_24610	PF00893	Small Multidrug Resistance protein
AL541_24615	PF00920	Dehydratase family
AL541_24620	PF01202	Shikimate kinase
AL541_24625	PF02447	AL541_24625
AL541_24630	PF01081	KDPG and KHG aldolase
AL541_24635	PF01048	Phosphorylase superfamily
AL541_24640	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL541_24640	PF03466	LysR substrate binding domain
AL541_24645	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL541_24645	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL541_24650	PF04378	Ribosomal RNA small subunit methyltransferase D, RsmJ
AL541_24655	PF01432	Peptidase family M3
AL541_24660	PF01037	AsnC family
AL541_24660	PF13404	AsnC-type helix-turn-helix domain
AL541_24665	PF00563	EAL domain
AL541_24665	PF00990	GGDEF domain
AL541_24665	PF13426	PAS domain
AL541_24670	PF04445	Putative SAM-dependent methyltransferase
AL541_24680	PF00892	EamA-like transporter family
AL541_24685	PF00582	Universal stress protein family
AL541_24690	PF00210	Ferritin-like domain
AL541_24695	PF10625	AL541_24695
AL541_24700	PF03486	HI0933-like protein
AL541_24705	PF00158	Sigma-54 interaction domain
AL541_24705	PF02954	Bacterial regulatory protein, Fis family
AL541_24710	PF04972	BON domain
AL541_24715	PF07043	AL541_24715
AL541_24725	PF01814	Hemerythrin HHE cation binding domain
AL541_24730	PF00781	Diacylglycerol kinase catalytic domain
AL541_24730	PF00782	Dual specificity phosphatase, catalytic domain
AL541_24740	PF09537	Domain of unknown function (DUF2383)
AL541_24760	PF01594	AL541_24760
AL541_24765	PF00563	EAL domain
AL541_24765	PF00990	GGDEF domain
AL541_24765	PF08448	PAS fold
AL541_24765	PF13426	PAS domain
AL541_24770	PF00892	EamA-like transporter family
AL541_24775	PF02646	AL541_24775
AL541_24780	PF01209	ubiE/COQ5 methyltransferase family
AL541_24785	PF02036	SCP-2 sterol transfer family
AL541_24790	PF03109	AL541_24790
AL541_24795	PF02416	mttA/Hcf106 family
AL541_24800	PF02416	mttA/Hcf106 family
AL541_24805	PF00902	Sec-independent protein translocase protein (TatC)
AL541_24815	PF01026	TatD related DNase
AL541_24825	PF00490	Delta-aminolevulinic acid dehydratase
AL541_24830	PF00583	Acetyltransferase (GNAT) family
AL541_24840	PF00476	DNA polymerase family A
AL541_24840	PF01367	5'-3' exonuclease, C-terminal SAM fold
AL541_24840	PF01612	3'-5' exonuclease
AL541_24840	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain
AL541_24845	PF01926	50S ribosome-binding GTPase
AL541_24850	PF00034	Cytochrome c
AL541_24860	PF13489	Methyltransferase domain
AL541_24865	PF04220	AL541_24865
AL541_24870	PF10675	AL541_24870
AL541_24875	PF04055	Radical SAM superfamily
AL541_24875	PF06969	HemN C-terminal domain
AL541_24880	PF00962	Adenosine/AMP deaminase
AL541_24885	PF00563	EAL domain
AL541_24885	PF00990	GGDEF domain
AL541_24885	PF02743	Cache domain
AL541_24890	PF00072	Response regulator receiver domain
AL541_24890	PF00158	Sigma-54 interaction domain
AL541_24890	PF02954	Bacterial regulatory protein, Fis family
AL541_24895	PF00512	His Kinase A (phospho-acceptor) domain
AL541_24895	PF00989	PAS fold
AL541_24895	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_24900	PF13511	AL541_24900
AL541_24905	PF00120	Glutamine synthetase, catalytic domain
AL541_24905	PF03951	Glutamine synthetase, beta-Grasp domain
AL541_24910	PF00009	Elongation factor Tu GTP binding domain
AL541_24910	PF00679	Elongation factor G C-terminus
AL541_24910	PF03144	Elongation factor Tu domain 2
AL541_24915	PF13521	AAA domain
AL541_24920	PF11172	AL541_24920
AL541_24925	PF03631	AL541_24925
AL541_24930	PF02580	D-Tyr-tRNA(Tyr) deacylase
AL541_24935	PF09500	Putative thioesterase (yiiD_Cterm)
AL541_24935	PF13673	Acetyltransferase (GNAT) domain
AL541_24940	PF05170	AL541_24940
AL541_24945	PF01293	Phosphoenolpyruvate carboxykinase
AL541_24950	PF01430	Hsp33 protein
AL541_24955	PF01479	S4 domain
AL541_24960	PF11356	Type IV pilus biogenesis
AL541_24965	PF00263	AL541_24965
AL541_24965	PF03958	Bacterial type II/III secretion system short domain
AL541_24970	PF00437	Type II/IV secretion system protein
AL541_24975	PF00482	Type II secretion system (T2SS), protein F
AL541_24980	PF07963	Prokaryotic N-terminal methylation motif
AL541_24980	PF08334	Type II secretion system (T2SS), protein G
AL541_24985	PF07963	Prokaryotic N-terminal methylation motif
AL541_24985	PF12019	Type II transport protein GspH
AL541_24990	PF02501	Type II secretion system (T2SS), protein I
AL541_24995	PF07963	Prokaryotic N-terminal methylation motif
AL541_24995	PF11612	Type II secretion system (T2SS), protein J
AL541_25000	PF03934	Type II secretion system (T2SS), protein K
AL541_25005	PF05134	Type II secretion system (T2SS), protein L
AL541_25005	PF12693	GspL periplasmic domain
AL541_25010	PF04612	Type II secretion system (T2SS), protein M
AL541_25015	PF01203	AL541_25015
AL541_25020	PF00459	Inositol monophosphatase family
AL541_25025	PF00293	NUDIX domain
AL541_25030	PF01106	NifU-like domain
AL541_25030	PF01521	Iron-sulphur cluster biosynthesis
AL541_25035	PF00156	Phosphoribosyl transferase domain
AL541_25040	PF00561	alpha/beta hydrolase fold
AL541_25050	PF00575	S1 RNA binding domain
AL541_25050	PF09371	Tex-like protein N-terminal domain
AL541_25050	PF12836	Helix-hairpin-helix motif
AL541_25050	PF16921	AL541_25050
AL541_25055	PF05618	Putative ATP-dependant zinc protease
AL541_25060	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL541_25060	PF03449	Transcription elongation factor, N-terminal
AL541_25065	PF06476	AL541_25065
AL541_25070	PF00072	Response regulator receiver domain
AL541_25070	PF00486	Transcriptional regulatory protein, C terminal
AL541_25075	PF00512	His Kinase A (phospho-acceptor) domain
AL541_25075	PF00672	HAMP domain
AL541_25075	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL541_25080	PF00860	Permease family
AL541_25085	PF00270	DEAD/DEAH box helicase
AL541_25085	PF00271	Helicase conserved C-terminal domain
AL541_25085	PF17191	AL541_25085
AL541_25090	PF00588	SpoU rRNA Methylase family
AL541_25090	PF12105	SpoU, rRNA methylase, C-terminal
AL541_25095	PF02824	TGS domain
AL541_25095	PF04607	Region found in RelA / SpoT proteins
AL541_25095	PF13291	ACT domain
AL541_25095	PF13328	HD domain
AL541_25100	PF01192	RNA polymerase Rpb6
AL541_25105	PF00625	Guanylate kinase
AL541_25115	PF13181	Tetratricopeptide repeat
AL541_25120	PF03544	Gram-negative bacterial TonB protein C-terminal
AL541_25125	PF02472	Biopolymer transport protein ExbD/TolR
AL541_25130	PF01618	AL541_25130
AL541_25135	PF01618	AL541_25135
AL541_25140	PF11932	AL541_25140
AL541_25145	PF00593	TonB dependent receptor
AL541_25145	PF07715	TonB-dependent Receptor Plug Domain
AL541_25155	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_25160	PF00528	Binding-protein-dependent transport system inner membrane component
AL541_25165	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL541_25170	PF00005	ABC transporter
AL541_25170	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL541_25175	PF00005	ABC transporter
AL541_25180	PF06146	AL541_25180
AL541_25185	PF03755	AL541_25185
AL541_25185	PF08340	AL541_25185
AL541_25195	PF01138	3' exoribonuclease family, domain 1
AL541_25195	PF03725	3' exoribonuclease family, domain 2
AL541_25200	PF00156	Phosphoribosyl transferase domain
AL541_25205	PF03279	AL541_25205
AL541_25210	PF00440	Bacterial regulatory proteins, tetR family
AL541_25215	PF02441	Flavoprotein
AL541_25215	PF04127	DNA / pantothenate metabolism flavoprotein
AL541_25225	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL541_25225	PF00672	HAMP domain
AL541_25225	PF17200	AL541_25225
AL541_25230	PF04002	RadC-like JAB domain
AL541_25235	PF00830	Ribosomal L28 family
AL541_25240	PF00471	Ribosomal protein L33
AL541_25250	PF01149	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL541_25250	PF06827	Zinc finger found in FPG and IleRS
AL541_25250	PF06831	Formamidopyrimidine-DNA glycosylase H2TH domain
AL541_25255	PF01467	Cytidylyltransferase
AL541_25260	PF05686	AL541_25260
AL541_25265	PF00535	Glycosyl transferase family 2
AL541_25265	PF02709	N-terminal domain of galactosyltransferase
AL541_25270	PF00535	Glycosyl transferase family 2
AL541_25275	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL541_25280	PF01219	Prokaryotic diacylglycerol kinase
AL541_25285	PF06293	Lipopolysaccharide kinase (Kdo/WaaP) family
AL541_25290	PF16363	AL541_25290
AL541_25295	PF00483	Nucleotidyl transferase
AL541_25300	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family
AL541_25305	PF00501	AMP-binding enzyme
AL541_25305	PF13193	AMP-binding enzyme C-terminal domain
AL541_25310	PF00550	Phosphopantetheine attachment site
AL541_25315	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL541_25315	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL541_25320	PF00550	Phosphopantetheine attachment site
AL541_25325	PF13561	Enoyl-(Acyl carrier protein) reductase
AL541_25330	PF00551	Formyl transferase
AL541_25335	PF00132	Bacterial transferase hexapeptide (six repeats)
AL541_25340	PF00535	Glycosyl transferase family 2
AL541_25345	PF00534	Glycosyl transferases group 1
AL541_25345	PF04413	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
AL541_25350	PF01075	Glycosyltransferase family 9 (heptosyltransferase)
AL541_25355	PF01755	AL541_25355
AL541_25360	PF03279	AL541_25360
AL541_25365	PF01370	NAD dependent epimerase/dehydratase family
AL541_25370	PF06082	AL541_25370
AL541_25375	PF06251	Capsule biosynthesis GfcC
AL541_25380	PF11102	Group 4 capsule polysaccharide formation lipoprotein gfcB
AL541_25390	PF13505	Outer membrane protein beta-barrel domain
AL541_25395	PF02563	Polysaccharide biosynthesis/export protein
AL541_25395	PF06251	Capsule biosynthesis GfcC
AL541_25395	PF10531	SLBB domain
AL541_25400	PF02706	Chain length determinant protein
AL541_25410	PF00534	Glycosyl transferases group 1
AL541_25415	PF00534	Glycosyl transferases group 1
AL541_25430	PF00535	Glycosyl transferase family 2
AL541_25435	PF00535	Glycosyl transferase family 2
AL541_25440	PF16363	AL541_25440
AL541_25445	PF01370	NAD dependent epimerase/dehydratase family
AL541_25450	PF00293	NUDIX domain
AL541_25455	PF00483	Nucleotidyl transferase
AL541_25455	PF01050	Mannose-6-phosphate isomerase
AL541_25460	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL541_25460	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL541_25460	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL541_25460	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL541_25465	PF01238	Phosphomannose isomerase type I
AL541_25470	PF00535	Glycosyl transferase family 2
AL541_25475	PF01370	NAD dependent epimerase/dehydratase family
AL541_25480	PF02397	AL541_25480
AL541_25485	PF02719	Polysaccharide biosynthesis protein
AL541_25485	PF13727	CoA-binding domain
AL541_25490	PF00984	UDP-glucose/GDP-mannose dehydrogenase family, central domain
AL541_25490	PF03720	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
AL541_25490	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
AL541_25495	PF00483	Nucleotidyl transferase
AL541_25500	PF00753	Metallo-beta-lactamase superfamily
AL541_25500	PF07521	RNA-metabolising metallo-beta-lactamase
AL541_25500	PF10996	Beta-Casp domain
AL541_25505	PF00121	Triosephosphate isomerase