AL541_00040 SM00382 ATPases associated with a variety of cellular activities AL541_00065 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_00070 SM00642 Alpha-amylase domain AL541_00075 SM00422 helix_turn_helix, mercury resistance AL541_00110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_00110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_00145 SM01007 Class II Aldolase and Adducin N-terminal domain AL541_00160 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_00160 SM01134 AL541_00160 AL541_00175 SM00382 ATPases associated with a variety of cellular activities AL541_00180 SM00382 ATPases associated with a variety of cellular activities AL541_00195 SM00260 Two component signalling adaptor domain AL541_00195 SM00448 cheY-homologous receiver domain AL541_00215 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_00245 SM00382 ATPases associated with a variety of cellular activities AL541_00345 SM00382 ATPases associated with a variety of cellular activities AL541_00350 SM00382 ATPases associated with a variety of cellular activities AL541_00355 SM00342 helix_turn_helix, arabinose operon control protein AL541_00390 SM00382 ATPases associated with a variety of cellular activities AL541_00450 SM01022 AL541_00450 AL541_00460 SM00829 Enoylreductase AL541_00470 SM01060 AL541_00470 AL541_00490 SM00849 Metallo-beta-lactamase superfamily AL541_00495 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_00495 SM00382 ATPases associated with a variety of cellular activities AL541_00560 SM00448 cheY-homologous receiver domain AL541_00560 SM00862 Transcriptional regulatory protein, C terminal AL541_00565 SM00387 Histidine kinase-like ATPases AL541_00565 SM00388 His Kinase A (phosphoacceptor) domain AL541_00570 SM00382 ATPases associated with a variety of cellular activities AL541_00580 SM00382 ATPases associated with a variety of cellular activities AL541_00605 SM00382 ATPases associated with a variety of cellular activities AL541_00615 SM00421 helix_turn_helix, Lux Regulon AL541_00620 SM00421 helix_turn_helix, Lux Regulon AL541_00630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_00630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_00650 SM00327 von Willebrand factor (vWF) type A domain AL541_00655 SM00327 von Willebrand factor (vWF) type A domain AL541_00665 SM00267 diguanylate cyclase AL541_00670 SM00382 ATPases associated with a variety of cellular activities AL541_00690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_00690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_00720 SM00487 DEAD-like helicases superfamily AL541_00720 SM00490 helicase superfamily c-terminal domain AL541_00730 SM00257 Lysin motif AL541_00740 SM00422 helix_turn_helix, mercury resistance AL541_00760 SM00028 Tetratricopeptide repeats AL541_00765 SM00267 diguanylate cyclase AL541_00785 SM00382 ATPases associated with a variety of cellular activities AL541_00820 SM00587 ZnF_C4 abd HLH domain containing kinases domain AL541_00840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_00840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_00855 SM00382 ATPases associated with a variety of cellular activities AL541_00890 SM01057 Eukaryotic-type carbonic anhydrase AL541_00895 SM00972 Spore Coat Protein U domain AL541_00910 SM00972 Spore Coat Protein U domain AL541_00915 SM00972 Spore Coat Protein U domain AL541_00920 SM00829 Enoylreductase AL541_00930 SM00052 Putative diguanylate phosphodiesterase AL541_00930 SM00267 diguanylate cyclase AL541_00935 SM00062 Bacterial periplasmic substrate-binding proteins AL541_00950 SM00388 His Kinase A (phosphoacceptor) domain AL541_00955 SM00448 cheY-homologous receiver domain AL541_00955 SM00862 Transcriptional regulatory protein, C terminal AL541_01000 SM00481 DNA polymerase alpha chain like domain AL541_01020 SM00020 Trypsin-like serine protease AL541_01030 SM00382 ATPases associated with a variety of cellular activities AL541_01055 SM00382 ATPases associated with a variety of cellular activities AL541_01215 SM00387 Histidine kinase-like ATPases AL541_01215 SM00388 His Kinase A (phosphoacceptor) domain AL541_01220 SM00448 cheY-homologous receiver domain AL541_01220 SM00862 Transcriptional regulatory protein, C terminal AL541_01335 SM00342 helix_turn_helix, arabinose operon control protein AL541_01340 SM00642 Alpha-amylase domain AL541_01345 SM00936 Penicillin-binding protein 5, C-terminal domain AL541_01355 SM00450 Rhodanese Homology Domain AL541_01370 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AL541_01400 SM00226 Low molecular weight phosphatase family AL541_01475 SM00642 Alpha-amylase domain AL541_01485 SM00642 Alpha-amylase domain AL541_01500 SM00421 helix_turn_helix, Lux Regulon AL541_01545 SM00671 Sel1-like repeats. AL541_01550 SM00642 Alpha-amylase domain AL541_01560 SM00642 Alpha-amylase domain AL541_01580 SM00642 Alpha-amylase domain AL541_01635 SM00354 helix_turn _helix lactose operon repressor AL541_01670 SM00354 helix_turn _helix lactose operon repressor AL541_01675 SM00857 Resolvase, N terminal domain AL541_01710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_01710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_01715 SM00382 ATPases associated with a variety of cellular activities AL541_01775 SM00387 Histidine kinase-like ATPases AL541_01780 SM00448 cheY-homologous receiver domain AL541_01780 SM00862 Transcriptional regulatory protein, C terminal AL541_01810 SM00382 ATPases associated with a variety of cellular activities AL541_01835 SM00342 helix_turn_helix, arabinose operon control protein AL541_01840 SM00342 helix_turn_helix, arabinose operon control protein AL541_01840 SM00871 Bacterial transcription activator, effector binding domain AL541_01865 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_01930 SM00829 Enoylreductase AL541_01935 SM00342 helix_turn_helix, arabinose operon control protein AL541_01945 SM00487 DEAD-like helicases superfamily AL541_01945 SM00490 helicase superfamily c-terminal domain AL541_01955 SM00382 ATPases associated with a variety of cellular activities AL541_01965 SM00344 helix_turn_helix ASNC type AL541_01985 SM00360 RNA recognition motif AL541_02010 SM00342 helix_turn_helix, arabinose operon control protein AL541_02015 SM00421 helix_turn_helix, Lux Regulon AL541_02025 SM00387 Histidine kinase-like ATPases AL541_02030 SM00448 cheY-homologous receiver domain AL541_02045 SM00052 Putative diguanylate phosphodiesterase AL541_02045 SM00267 diguanylate cyclase AL541_02050 SM00382 ATPases associated with a variety of cellular activities AL541_02125 SM00470 ParB-like nuclease domain AL541_02145 SM00382 ATPases associated with a variety of cellular activities AL541_02150 SM00382 ATPases associated with a variety of cellular activities AL541_02170 SM00387 Histidine kinase-like ATPases AL541_02170 SM00388 His Kinase A (phosphoacceptor) domain AL541_02170 SM00448 cheY-homologous receiver domain AL541_02195 SM00382 ATPases associated with a variety of cellular activities AL541_02215 SM00387 Histidine kinase-like ATPases AL541_02220 SM00448 cheY-homologous receiver domain AL541_02220 SM00850 LytTr DNA-binding domain AL541_02230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_02230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_02230 SM01049 AL541_02230 AL541_02260 SM00382 ATPases associated with a variety of cellular activities AL541_02265 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_02315 SM00342 helix_turn_helix, arabinose operon control protein AL541_02315 SM01009 AlkA N-terminal domain AL541_02360 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL541_02360 SM00495 Chitin-binding domain type 3 AL541_02360 SM00636 AL541_02360 AL541_02380 SM00267 diguanylate cyclase AL541_02400 SM00849 Metallo-beta-lactamase superfamily AL541_02420 SM00267 diguanylate cyclase AL541_02435 SM00829 Enoylreductase AL541_02460 SM00344 helix_turn_helix ASNC type AL541_02465 SM00495 Chitin-binding domain type 3 AL541_02560 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_02595 SM00822 AL541_02595 AL541_02615 SM00014 Acid phosphatase homologues AL541_02645 SM00382 ATPases associated with a variety of cellular activities AL541_02740 SM00448 cheY-homologous receiver domain AL541_02740 SM00862 Transcriptional regulatory protein, C terminal AL541_02745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_02745 SM00387 Histidine kinase-like ATPases AL541_02745 SM00388 His Kinase A (phosphoacceptor) domain AL541_02825 SM00382 ATPases associated with a variety of cellular activities AL541_02865 SM00849 Metallo-beta-lactamase superfamily AL541_02920 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_02920 SM00387 Histidine kinase-like ATPases AL541_02925 SM00382 ATPases associated with a variety of cellular activities AL541_02925 SM00448 cheY-homologous receiver domain AL541_02930 SM00267 diguanylate cyclase AL541_03030 SM00267 diguanylate cyclase AL541_03030 SM01079 AL541_03030 AL541_03035 SM00530 Helix-turn-helix XRE-family like proteins AL541_03045 SM00267 diguanylate cyclase AL541_03080 SM01266 AL541_03080 AL541_03140 SM01057 Eukaryotic-type carbonic anhydrase AL541_03160 SM00382 ATPases associated with a variety of cellular activities AL541_03210 SM00354 helix_turn _helix lactose operon repressor AL541_03235 SM00382 ATPases associated with a variety of cellular activities AL541_03245 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_03245 SM00866 AL541_03245 AL541_03275 SM00631 AL541_03275 AL541_03340 SM00858 AL541_03340 AL541_03415 SM01240 AL541_03415 AL541_03430 SM00450 Rhodanese Homology Domain AL541_03435 SM00883 Chaperonin 10 Kd subunit AL541_03475 SM00342 helix_turn_helix, arabinose operon control protein AL541_03505 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_03505 SM01134 AL541_03505 AL541_03580 SM00382 ATPases associated with a variety of cellular activities AL541_03620 SM00838 Elongation factor G C-terminus AL541_03620 SM00889 Elongation factor G, domain IV AL541_03630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL541_03655 SM00422 helix_turn_helix, mercury resistance AL541_03665 SM00028 Tetratricopeptide repeats AL541_03670 SM01022 AL541_03670 AL541_03680 SM00155 Phospholipase D. Active site motifs. AL541_03730 SM00382 ATPases associated with a variety of cellular activities AL541_03755 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_03755 SM00866 AL541_03755 AL541_03790 SM00421 helix_turn_helix, Lux Regulon AL541_03810 SM00870 AL541_03810 AL541_03815 SM00788 Adenylosuccinate synthetase AL541_03850 SM00344 helix_turn_helix ASNC type AL541_03865 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_03870 SM00342 helix_turn_helix, arabinose operon control protein AL541_03885 SM00829 Enoylreductase AL541_03915 SM00487 DEAD-like helicases superfamily AL541_03915 SM00490 helicase superfamily c-terminal domain AL541_03950 SM00342 helix_turn_helix, arabinose operon control protein AL541_03950 SM00871 Bacterial transcription activator, effector binding domain AL541_03990 SM00822 AL541_03990 AL541_04025 SM00354 helix_turn _helix lactose operon repressor AL541_04040 SM00640 Glycosyl hydrolases family 32 AL541_04065 SM00936 Penicillin-binding protein 5, C-terminal domain AL541_04095 SM00357 Cold shock protein domain AL541_04140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_04140 SM00387 Histidine kinase-like ATPases AL541_04140 SM00388 His Kinase A (phosphoacceptor) domain AL541_04145 SM00448 cheY-homologous receiver domain AL541_04145 SM00862 Transcriptional regulatory protein, C terminal AL541_04190 SM00563 Phosphate acyltransferases AL541_04200 SM00530 Helix-turn-helix XRE-family like proteins AL541_04205 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_04220 SM00924 MgtE intracellular N domain AL541_04240 SM00342 helix_turn_helix, arabinose operon control protein AL541_04255 SM00448 cheY-homologous receiver domain AL541_04255 SM00862 Transcriptional regulatory protein, C terminal AL541_04260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_04260 SM00387 Histidine kinase-like ATPases AL541_04260 SM00388 His Kinase A (phosphoacceptor) domain AL541_04270 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_04285 SM00344 helix_turn_helix ASNC type AL541_04305 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_04310 SM00387 Histidine kinase-like ATPases AL541_04310 SM00388 His Kinase A (phosphoacceptor) domain AL541_04310 SM00448 cheY-homologous receiver domain AL541_04335 SM00465 GIY-YIG type nucleases (URI domain) AL541_04350 SM00387 Histidine kinase-like ATPases AL541_04350 SM00388 His Kinase A (phosphoacceptor) domain AL541_04350 SM00448 cheY-homologous receiver domain AL541_04355 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_04380 SM00344 helix_turn_helix ASNC type AL541_04430 SM00822 AL541_04430 AL541_04465 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_04480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_04480 SM00387 Histidine kinase-like ATPases AL541_04485 SM00421 helix_turn_helix, Lux Regulon AL541_04485 SM00448 cheY-homologous receiver domain AL541_04520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_04555 SM00091 PAS domain AL541_04555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_04560 SM00861 Transketolase, pyrimidine binding domain AL541_04585 SM00450 Rhodanese Homology Domain AL541_04605 SM00852 Probable molybdopterin binding domain AL541_04640 SM00448 cheY-homologous receiver domain AL541_04655 SM01240 AL541_04655 AL541_04725 SM00342 helix_turn_helix, arabinose operon control protein AL541_04790 SM00382 ATPases associated with a variety of cellular activities AL541_04795 SM00382 ATPases associated with a variety of cellular activities AL541_04795 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_04830 SM00220 Serine/Threonine protein kinases, catalytic domain AL541_04865 SM00344 helix_turn_helix ASNC type AL541_04885 SM00240 Forkhead associated domain AL541_04935 SM00342 helix_turn_helix, arabinose operon control protein AL541_04945 SM00822 AL541_04945 AL541_04990 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_04990 SM00866 AL541_04990 AL541_05010 SM00893 Electron transfer flavoprotein domain AL541_05015 SM00893 Electron transfer flavoprotein domain AL541_05030 SM00382 ATPases associated with a variety of cellular activities AL541_05055 SM00382 ATPases associated with a variety of cellular activities AL541_05145 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_05150 SM01266 AL541_05150 AL541_05175 SM00878 Biotin carboxylase C-terminal domain AL541_05195 SM00422 helix_turn_helix, mercury resistance AL541_05230 SM00822 AL541_05230 AL541_05235 SM00028 Tetratricopeptide repeats AL541_05235 SM00267 diguanylate cyclase AL541_05265 SM00382 ATPases associated with a variety of cellular activities AL541_05280 SM00244 prohibitin homologues AL541_05295 SM00387 Histidine kinase-like ATPases AL541_05295 SM00388 His Kinase A (phosphoacceptor) domain AL541_05295 SM00448 cheY-homologous receiver domain AL541_05305 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL541_05360 SM00052 Putative diguanylate phosphodiesterase AL541_05360 SM00267 diguanylate cyclase AL541_05370 SM00382 ATPases associated with a variety of cellular activities AL541_05390 SM00354 helix_turn _helix lactose operon repressor AL541_05430 SM00382 ATPases associated with a variety of cellular activities AL541_05435 SM00422 helix_turn_helix, mercury resistance AL541_05440 SM00342 helix_turn_helix, arabinose operon control protein AL541_05490 SM00851 MGS-like domain AL541_05500 SM00073 Histidine Phosphotransfer domain AL541_05500 SM00387 Histidine kinase-like ATPases AL541_05500 SM00388 His Kinase A (phosphoacceptor) domain AL541_05500 SM00448 cheY-homologous receiver domain AL541_05515 SM00862 Transcriptional regulatory protein, C terminal AL541_05555 SM00327 von Willebrand factor (vWF) type A domain AL541_05560 SM00327 von Willebrand factor (vWF) type A domain AL541_05580 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL541_05595 SM00990 AL541_05595 AL541_05630 SM00387 Histidine kinase-like ATPases AL541_05630 SM00448 cheY-homologous receiver domain AL541_05645 SM00062 Bacterial periplasmic substrate-binding proteins AL541_05645 SM00387 Histidine kinase-like ATPases AL541_05645 SM00388 His Kinase A (phosphoacceptor) domain AL541_05645 SM00448 cheY-homologous receiver domain AL541_05650 SM00052 Putative diguanylate phosphodiesterase AL541_05650 SM00448 cheY-homologous receiver domain AL541_05655 SM00421 helix_turn_helix, Lux Regulon AL541_05655 SM00448 cheY-homologous receiver domain AL541_05660 SM00267 diguanylate cyclase AL541_05670 SM00421 helix_turn_helix, Lux Regulon AL541_05670 SM00448 cheY-homologous receiver domain AL541_05680 SM00260 Two component signalling adaptor domain AL541_05680 SM00448 cheY-homologous receiver domain AL541_05745 SM00704 CDGSH-type zinc finger. Function unknown. AL541_05760 SM00953 AL541_05760 AL541_05800 SM00924 MgtE intracellular N domain AL541_05840 SM00422 helix_turn_helix, mercury resistance AL541_05870 SM00382 ATPases associated with a variety of cellular activities AL541_05880 SM00479 AL541_05880 AL541_05930 SM00342 helix_turn_helix, arabinose operon control protein AL541_05950 SM00849 Metallo-beta-lactamase superfamily AL541_05980 SM00530 Helix-turn-helix XRE-family like proteins AL541_06030 SM00354 helix_turn _helix lactose operon repressor AL541_06045 SM00052 Putative diguanylate phosphodiesterase AL541_06055 SM00062 Bacterial periplasmic substrate-binding proteins AL541_06055 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_06065 SM00382 ATPases associated with a variety of cellular activities AL541_06080 SM00342 helix_turn_helix, arabinose operon control protein AL541_06090 SM00495 Chitin-binding domain type 3 AL541_06090 SM00636 AL541_06090 AL541_06130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_06145 SM00487 DEAD-like helicases superfamily AL541_06145 SM00490 helicase superfamily c-terminal domain AL541_06150 SM00052 Putative diguanylate phosphodiesterase AL541_06170 SM00867 YceI-like domain AL541_06175 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_06210 SM00782 PhnA Zinc-Ribbon AL541_06275 SM00271 DnaJ molecular chaperone homology domain AL541_06285 SM00052 Putative diguanylate phosphodiesterase AL541_06285 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_06285 SM00267 diguanylate cyclase AL541_06300 SM00382 ATPases associated with a variety of cellular activities AL541_06315 SM00797 Allophanate hydrolase subunit 2 AL541_06320 SM00796 Allophanate hydrolase subunit 1 AL541_06330 SM00091 PAS domain AL541_06330 SM00267 diguanylate cyclase AL541_06330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_06355 SM00881 CoA binding domain AL541_06550 SM00448 cheY-homologous receiver domain AL541_06550 SM00862 Transcriptional regulatory protein, C terminal AL541_06555 SM00387 Histidine kinase-like ATPases AL541_06555 SM00388 His Kinase A (phosphoacceptor) domain AL541_06565 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL541_06565 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL541_06580 SM00267 diguanylate cyclase AL541_06585 SM00267 diguanylate cyclase AL541_06585 SM00448 cheY-homologous receiver domain AL541_06595 SM00382 ATPases associated with a variety of cellular activities AL541_06635 SM00342 helix_turn_helix, arabinose operon control protein AL541_06675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_06680 SM00450 Rhodanese Homology Domain AL541_06730 SM00421 helix_turn_helix, Lux Regulon AL541_06730 SM00448 cheY-homologous receiver domain AL541_06735 SM00387 Histidine kinase-like ATPases AL541_06855 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_06855 SM00267 diguanylate cyclase AL541_06865 SM00267 diguanylate cyclase AL541_06890 SM00880 AL541_06890 AL541_06905 SM00642 Alpha-amylase domain AL541_06920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_06920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_06925 SM01005 Alanine racemase, C-terminal domain AL541_06965 SM00382 ATPases associated with a variety of cellular activities AL541_07035 SM00382 ATPases associated with a variety of cellular activities AL541_07035 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_07080 SM00331 Sigma factor PP2C-like phosphatases AL541_07080 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AL541_07110 SM00240 Forkhead associated domain AL541_07115 SM00220 Serine/Threonine protein kinases, catalytic domain AL541_07135 SM00331 Sigma factor PP2C-like phosphatases AL541_07135 SM00448 cheY-homologous receiver domain AL541_07170 SM00382 ATPases associated with a variety of cellular activities AL541_07190 SM01012 AL541_07190 AL541_07210 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_07230 SM00028 Tetratricopeptide repeats AL541_07230 SM00267 diguanylate cyclase AL541_07250 SM00871 Bacterial transcription activator, effector binding domain AL541_07255 SM00388 His Kinase A (phosphoacceptor) domain AL541_07260 SM00448 cheY-homologous receiver domain AL541_07260 SM00862 Transcriptional regulatory protein, C terminal AL541_07370 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_07370 SM00895 AL541_07370 AL541_07375 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_07375 SM00895 AL541_07375 AL541_07380 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_07385 SM00479 AL541_07385 AL541_07410 SM00861 Transketolase, pyrimidine binding domain AL541_07420 SM00893 Electron transfer flavoprotein domain AL541_07465 SM00062 Bacterial periplasmic substrate-binding proteins AL541_07465 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_07470 SM00382 ATPases associated with a variety of cellular activities AL541_07555 SM00822 AL541_07555 AL541_07590 SM00422 helix_turn_helix, mercury resistance AL541_07620 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_07620 SM00091 PAS domain AL541_07620 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_07645 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL541_07650 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL541_07695 SM00342 helix_turn_helix, arabinose operon control protein AL541_07745 SM00487 DEAD-like helicases superfamily AL541_07745 SM00490 helicase superfamily c-terminal domain AL541_07750 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_07750 SM00357 Cold shock protein domain AL541_07750 SM00955 AL541_07750 AL541_07755 SM00342 helix_turn_helix, arabinose operon control protein AL541_07780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_07785 SM00382 ATPases associated with a variety of cellular activities AL541_07790 SM00052 Putative diguanylate phosphodiesterase AL541_07810 SM00487 DEAD-like helicases superfamily AL541_07810 SM00490 helicase superfamily c-terminal domain AL541_07815 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL541_07835 SM00357 Cold shock protein domain AL541_07860 SM00487 DEAD-like helicases superfamily AL541_07860 SM00490 helicase superfamily c-terminal domain AL541_07965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_07965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_07990 SM00448 cheY-homologous receiver domain AL541_08000 SM00382 ATPases associated with a variety of cellular activities AL541_08005 SM00382 ATPases associated with a variety of cellular activities AL541_08020 SM00062 Bacterial periplasmic substrate-binding proteins AL541_08020 SM00267 diguanylate cyclase AL541_08030 SM00357 Cold shock protein domain AL541_08035 SM01322 AL541_08035 AL541_08125 SM00342 helix_turn_helix, arabinose operon control protein AL541_08185 SM00052 Putative diguanylate phosphodiesterase AL541_08185 SM00267 diguanylate cyclase AL541_08220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_08220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_08240 SM00530 Helix-turn-helix XRE-family like proteins AL541_08290 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_08300 SM00342 helix_turn_helix, arabinose operon control protein AL541_08320 SM00382 ATPases associated with a variety of cellular activities AL541_08335 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_08370 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_08370 SM00267 diguanylate cyclase AL541_08425 SM00382 ATPases associated with a variety of cellular activities AL541_08425 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_08440 SM00354 helix_turn _helix lactose operon repressor AL541_08445 SM00487 DEAD-like helicases superfamily AL541_08445 SM00490 helicase superfamily c-terminal domain AL541_08460 SM01403 AL541_08460 AL541_08480 SM01382 AL541_08480 AL541_08480 SM01383 AL541_08480 AL541_08495 SM00322 K homology RNA-binding domain AL541_08515 SM01374 AL541_08515 AL541_08520 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL541_08585 SM00363 S4 RNA-binding domain AL541_08585 SM01390 AL541_08585 AL541_08590 SM00662 RNA polymerases D AL541_08620 SM00487 DEAD-like helicases superfamily AL541_08620 SM00490 helicase superfamily c-terminal domain AL541_08675 SM00382 ATPases associated with a variety of cellular activities AL541_08760 SM00382 ATPases associated with a variety of cellular activities AL541_08860 SM00650 Ribosomal RNA adenine dimethylases AL541_08880 SM00271 DnaJ molecular chaperone homology domain AL541_08900 SM01329 AL541_08900 AL541_08905 SM00917 LeuA allosteric (dimerisation) domain AL541_08920 SM00014 Acid phosphatase homologues AL541_08950 SM00267 diguanylate cyclase AL541_08955 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_08965 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_08965 SM01134 AL541_08965 AL541_08985 SM01120 AL541_08985 AL541_09015 SM00563 Phosphate acyltransferases AL541_09125 SM00530 Helix-turn-helix XRE-family like proteins AL541_09140 SM00400 zinc finger AL541_09140 SM00493 AL541_09140 AL541_09140 SM00766 DNA primase DnaG DnaB-binding AL541_09165 SM01207 AL541_09165 AL541_09170 SM00905 Dihydroneopterin aldolase AL541_09190 SM00382 ATPases associated with a variety of cellular activities AL541_09205 SM00287 Bacterial SH3 domain homologues AL541_09220 SM00880 AL541_09220 AL541_09220 SM01118 AL541_09220 AL541_09230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_09270 SM00387 Histidine kinase-like ATPases AL541_09270 SM00433 TopoisomeraseII AL541_09275 SM00434 DNA Topoisomerase IV AL541_09280 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL541_09285 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL541_09345 SM00749 bacterial OsmY and nodulation domain AL541_09435 SM00842 Cell division protein FtsA AL541_09440 SM00864 Tubulin/FtsZ family, GTPase domain AL541_09440 SM00865 Tubulin/FtsZ family, C-terminal domain AL541_09455 SM00957 SecA DEAD-like domain AL541_09455 SM00958 SecA preprotein cross-linking domain AL541_09470 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AL541_09475 SM00851 MGS-like domain AL541_09475 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL541_09545 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_09550 SM00091 PAS domain AL541_09550 SM00267 diguanylate cyclase AL541_09555 SM00073 Histidine Phosphotransfer domain AL541_09555 SM00091 PAS domain AL541_09555 SM00387 Histidine kinase-like ATPases AL541_09555 SM00388 His Kinase A (phosphoacceptor) domain AL541_09555 SM00448 cheY-homologous receiver domain AL541_09565 SM00448 cheY-homologous receiver domain AL541_09565 SM00862 Transcriptional regulatory protein, C terminal AL541_09620 SM00518 AP endonuclease family 2 AL541_09630 SM00986 Uracil DNA glycosylase superfamily AL541_09630 SM00987 UreE urease accessory protein, C-terminal domain AL541_09655 SM00487 DEAD-like helicases superfamily AL541_09655 SM00490 helicase superfamily c-terminal domain AL541_09700 SM00382 ATPases associated with a variety of cellular activities AL541_09720 SM00927 DNA mismatch repair enzyme MutH AL541_09730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_09750 SM01154 AL541_09750 AL541_09765 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_09780 SM00904 Riboflavin kinase AL541_09805 SM00226 Low molecular weight phosphatase family AL541_09810 SM00448 cheY-homologous receiver domain AL541_09810 SM00850 LytTr DNA-binding domain AL541_09855 SM00830 Chorismate mutase type II AL541_09870 SM00382 ATPases associated with a variety of cellular activities AL541_09890 SM00830 Chorismate mutase type II AL541_09900 SM00062 Bacterial periplasmic substrate-binding proteins AL541_09910 SM00363 S4 RNA-binding domain AL541_09920 SM00382 ATPases associated with a variety of cellular activities AL541_09920 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_10005 SM00448 cheY-homologous receiver domain AL541_10005 SM00862 Transcriptional regulatory protein, C terminal AL541_10010 SM00091 PAS domain AL541_10010 SM00387 Histidine kinase-like ATPases AL541_10010 SM00388 His Kinase A (phosphoacceptor) domain AL541_10040 SM00382 ATPases associated with a variety of cellular activities AL541_10080 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_10085 SM00020 Trypsin-like serine protease AL541_10100 SM01323 AL541_10100 AL541_10155 SM00271 DnaJ molecular chaperone homology domain AL541_10180 SM00562 AL541_10180 AL541_10190 SM00530 Helix-turn-helix XRE-family like proteins AL541_10210 SM00564 beta-propeller repeat AL541_10215 SM00382 ATPases associated with a variety of cellular activities AL541_10235 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_10235 SM01240 AL541_10235 AL541_10250 SM00495 Chitin-binding domain type 3 AL541_10385 SM00271 DnaJ molecular chaperone homology domain AL541_10430 SM00062 Bacterial periplasmic substrate-binding proteins AL541_10435 SM01211 AL541_10435 AL541_10490 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL541_10540 SM00861 Transketolase, pyrimidine binding domain AL541_10565 SM00981 AL541_10565 AL541_10590 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL541_10590 SM00475 5'-3' exonuclease AL541_10600 SM00267 diguanylate cyclase AL541_10605 SM00028 Tetratricopeptide repeats AL541_10635 SM00382 ATPases associated with a variety of cellular activities AL541_10635 SM00930 AL541_10635 AL541_10645 SM00354 helix_turn _helix lactose operon repressor AL541_10655 SM00642 Alpha-amylase domain AL541_10665 SM00862 Transcriptional regulatory protein, C terminal AL541_10680 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_10695 SM00936 Penicillin-binding protein 5, C-terminal domain AL541_10750 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_10750 SM01091 Transporter associated domain AL541_10765 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_10895 SM01400 AL541_10895 AL541_10915 SM00937 AL541_10915 AL541_10950 SM00363 S4 RNA-binding domain AL541_10955 SM00463 Small MutS-related domain AL541_10980 SM01081 Putative carbohydrate binding domain AL541_11060 SM00858 AL541_11060 AL541_11065 SM00260 Two component signalling adaptor domain AL541_11065 SM00448 cheY-homologous receiver domain AL541_11070 SM00138 Methyltransferase, chemotaxis proteins AL541_11115 SM00047 Lysozyme subfamily 2 AL541_11185 SM00771 ZipA, C-terminal domain (FtsZ-binding) AL541_11190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL541_11190 SM00292 breast cancer carboxy-terminal domain AL541_11190 SM00532 Ligase N family AL541_11215 SM00244 prohibitin homologues AL541_11250 SM00938 Nitrogen regulatory protein P-II AL541_11255 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_11285 SM00862 Transcriptional regulatory protein, C terminal AL541_11290 SM00387 Histidine kinase-like ATPases AL541_11310 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL541_11420 SM00861 Transketolase, pyrimidine binding domain AL541_11435 SM00881 CoA binding domain AL541_11445 SM00382 ATPases associated with a variety of cellular activities AL541_11455 SM00342 helix_turn_helix, arabinose operon control protein AL541_11460 SM00899 AL541_11460 AL541_11485 SM00836 DALR anticodon binding domain AL541_11485 SM01016 Arginyl tRNA synthetase N terminal dom AL541_11505 SM00487 DEAD-like helicases superfamily AL541_11505 SM00491 AL541_11505 AL541_11535 SM00474 3'-5' exonuclease AL541_11585 SM00825 Beta-ketoacyl synthase AL541_11590 SM00822 AL541_11590 AL541_11600 SM00825 Beta-ketoacyl synthase AL541_11660 SM00563 Phosphate acyltransferases AL541_11690 SM00487 DEAD-like helicases superfamily AL541_11690 SM00490 helicase superfamily c-terminal domain AL541_11740 SM00382 ATPases associated with a variety of cellular activities AL541_11740 SM00448 cheY-homologous receiver domain AL541_11745 SM00387 Histidine kinase-like ATPases AL541_11745 SM00388 His Kinase A (phosphoacceptor) domain AL541_11765 SM00382 ATPases associated with a variety of cellular activities AL541_11765 SM00994 ClpX C4-type zinc finger AL541_11765 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_11770 SM00382 ATPases associated with a variety of cellular activities AL541_11770 SM00464 Found in ATP-dependent protease La (LON) AL541_11775 SM00411 bacterial (prokaryotic) histone like domain AL541_11785 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL541_11795 SM01144 AL541_11795 AL541_11800 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_11805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_11835 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL541_11855 SM00563 Phosphate acyltransferases AL541_11865 SM00978 AL541_11865 AL541_11925 SM00344 helix_turn_helix ASNC type AL541_11955 SM00062 Bacterial periplasmic substrate-binding proteins AL541_11955 SM00267 diguanylate cyclase AL541_11970 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_11990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_11990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_12040 SM00487 DEAD-like helicases superfamily AL541_12040 SM00490 helicase superfamily c-terminal domain AL541_12040 SM00982 AL541_12040 AL541_12040 SM01058 CarD-like/TRCF domain AL541_12055 SM00382 ATPases associated with a variety of cellular activities AL541_12070 SM00849 Metallo-beta-lactamase superfamily AL541_12080 SM00382 ATPases associated with a variety of cellular activities AL541_12110 SM00763 PrkA AAA domain AL541_12160 SM00382 ATPases associated with a variety of cellular activities AL541_12165 SM00062 Bacterial periplasmic substrate-binding proteins AL541_12165 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_12180 SM01276 AL541_12180 AL541_12205 SM00491 AL541_12205 AL541_12230 SM00357 Cold shock protein domain AL541_12240 SM00382 ATPases associated with a variety of cellular activities AL541_12240 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_12245 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_12275 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL541_12275 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL541_12275 SM00493 AL541_12275 AL541_12310 SM00354 helix_turn _helix lactose operon repressor AL541_12320 SM00448 cheY-homologous receiver domain AL541_12320 SM00862 Transcriptional regulatory protein, C terminal AL541_12405 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL541_12410 SM00382 ATPases associated with a variety of cellular activities AL541_12465 SM00028 Tetratricopeptide repeats AL541_12500 SM00387 Histidine kinase-like ATPases AL541_12500 SM00388 His Kinase A (phosphoacceptor) domain AL541_12500 SM00448 cheY-homologous receiver domain AL541_12535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_12535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_12550 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_12580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_12605 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL541_12605 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL541_12610 SM00344 helix_turn_helix ASNC type AL541_12615 SM00843 AL541_12615 AL541_12625 SM00382 ATPases associated with a variety of cellular activities AL541_12655 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_12655 SM00876 Biotin and Thiamin Synthesis associated domain AL541_12750 SM00528 Domain in histone-like proteins of HNS family AL541_12805 SM00052 Putative diguanylate phosphodiesterase AL541_12820 SM00840 AL541_12820 AL541_12895 SM01131 AL541_12895 AL541_12905 SM00382 ATPases associated with a variety of cellular activities AL541_12910 SM00382 ATPases associated with a variety of cellular activities AL541_12930 SM00382 ATPases associated with a variety of cellular activities AL541_12985 SM00155 Phospholipase D. Active site motifs. AL541_13015 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_13015 SM00382 ATPases associated with a variety of cellular activities AL541_13035 SM00382 ATPases associated with a variety of cellular activities AL541_13085 SM00387 Histidine kinase-like ATPases AL541_13090 SM00448 cheY-homologous receiver domain AL541_13090 SM00862 Transcriptional regulatory protein, C terminal AL541_13100 SM00487 DEAD-like helicases superfamily AL541_13100 SM00490 helicase superfamily c-terminal domain AL541_13105 SM00363 S4 RNA-binding domain AL541_13135 SM00382 ATPases associated with a variety of cellular activities AL541_13235 SM00448 cheY-homologous receiver domain AL541_13240 SM00387 Histidine kinase-like ATPases AL541_13260 SM00382 ATPases associated with a variety of cellular activities AL541_13265 SM00382 ATPases associated with a variety of cellular activities AL541_13290 SM00267 diguanylate cyclase AL541_13305 SM00919 Malic enzyme, NAD binding domain AL541_13305 SM01274 AL541_13305 AL541_13310 SM00487 DEAD-like helicases superfamily AL541_13310 SM00490 helicase superfamily c-terminal domain AL541_13320 SM01321 AL541_13320 AL541_13400 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_13400 SM00866 AL541_13400 AL541_13415 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL541_13440 SM00530 Helix-turn-helix XRE-family like proteins AL541_13475 SM00873 B3/4 domain AL541_13475 SM00874 tRNA synthetase B5 domain AL541_13475 SM00896 Ferredoxin-fold anticodon binding domain AL541_13485 SM00411 bacterial (prokaryotic) histone like domain AL541_13520 SM00479 AL541_13520 AL541_13550 SM00855 Phosphoglycerate mutase family AL541_13570 SM00382 ATPases associated with a variety of cellular activities AL541_13615 SM00245 tail specific protease AL541_13625 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_13625 SM00895 AL541_13625 AL541_13655 SM01130 AL541_13655 AL541_13660 SM00382 ATPases associated with a variety of cellular activities AL541_13680 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL541_13690 SM00382 ATPases associated with a variety of cellular activities AL541_13695 SM00382 ATPases associated with a variety of cellular activities AL541_13915 SM01230 AL541_13915 AL541_13930 SM00530 Helix-turn-helix XRE-family like proteins AL541_13965 SM00052 Putative diguanylate phosphodiesterase AL541_13975 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_14005 SM00387 Histidine kinase-like ATPases AL541_14005 SM00388 His Kinase A (phosphoacceptor) domain AL541_14005 SM00448 cheY-homologous receiver domain AL541_14010 SM00052 Putative diguanylate phosphodiesterase AL541_14010 SM00267 diguanylate cyclase AL541_14020 SM00028 Tetratricopeptide repeats AL541_14050 SM00487 DEAD-like helicases superfamily AL541_14080 SM00857 Resolvase, N terminal domain AL541_14085 SM00382 ATPases associated with a variety of cellular activities AL541_14135 SM00528 Domain in histone-like proteins of HNS family AL541_14155 SM00990 AL541_14155 AL541_14195 SM00530 Helix-turn-helix XRE-family like proteins AL541_14215 SM00267 diguanylate cyclase AL541_14235 SM00382 ATPases associated with a variety of cellular activities AL541_14315 SM00382 ATPases associated with a variety of cellular activities AL541_14320 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_14320 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_14325 SM00479 AL541_14325 AL541_14360 SM00028 Tetratricopeptide repeats AL541_14425 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_14425 SM01134 AL541_14425 AL541_14440 SM00267 diguanylate cyclase AL541_14465 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_14465 SM00387 Histidine kinase-like ATPases AL541_14470 SM00448 cheY-homologous receiver domain AL541_14475 SM00052 Putative diguanylate phosphodiesterase AL541_14475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_14475 SM00091 PAS domain AL541_14475 SM00267 diguanylate cyclase AL541_14480 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_14510 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AL541_14515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_14540 SM00382 ATPases associated with a variety of cellular activities AL541_14565 SM00382 ATPases associated with a variety of cellular activities AL541_14570 SM00382 ATPases associated with a variety of cellular activities AL541_14625 SM00267 diguanylate cyclase AL541_14625 SM01079 AL541_14625 AL541_14630 SM00479 AL541_14630 AL541_14665 SM00382 ATPases associated with a variety of cellular activities AL541_14665 SM00487 DEAD-like helicases superfamily AL541_14665 SM00490 helicase superfamily c-terminal domain AL541_14665 SM00847 Helicase associated domain (HA2) Add an annotation AL541_14740 SM00382 ATPases associated with a variety of cellular activities AL541_14740 SM00448 cheY-homologous receiver domain AL541_14800 SM00448 cheY-homologous receiver domain AL541_14805 SM00267 diguanylate cyclase AL541_14820 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_14845 SM01144 AL541_14845 AL541_14860 SM00852 Probable molybdopterin binding domain AL541_14870 SM00382 ATPases associated with a variety of cellular activities AL541_14885 SM00382 ATPases associated with a variety of cellular activities AL541_14885 SM00448 cheY-homologous receiver domain AL541_14890 SM00387 Histidine kinase-like ATPases AL541_14890 SM00388 His Kinase A (phosphoacceptor) domain AL541_14900 SM00382 ATPases associated with a variety of cellular activities AL541_14935 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_15085 SM00248 ankyrin repeats AL541_15120 SM00382 ATPases associated with a variety of cellular activities AL541_15150 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_15150 SM00419 helix_turn_helix, cAMP Regulatory protein AL541_15200 SM00897 FIST N domain AL541_15200 SM01204 AL541_15200 AL541_15205 SM00387 Histidine kinase-like ATPases AL541_15205 SM00388 His Kinase A (phosphoacceptor) domain AL541_15205 SM00448 cheY-homologous receiver domain AL541_15255 SM00382 ATPases associated with a variety of cellular activities AL541_15265 SM00981 AL541_15265 AL541_15300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL541_15300 SM00245 tail specific protease AL541_15305 SM00945 ProQ/FINO family AL541_15315 SM00382 ATPases associated with a variety of cellular activities AL541_15370 SM00062 Bacterial periplasmic substrate-binding proteins AL541_15385 SM00382 ATPases associated with a variety of cellular activities AL541_15410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_15415 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL541_15435 SM00112 Cadherin repeats. AL541_15435 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AL541_15435 SM00327 von Willebrand factor (vWF) type A domain AL541_15435 SM00736 Dystroglycan-type cadherin-like domains. AL541_15465 SM00028 Tetratricopeptide repeats AL541_15465 SM00267 diguanylate cyclase AL541_15470 SM00346 helix_turn_helix isocitrate lyase regulation AL541_15510 SM00829 Enoylreductase AL541_15515 SM00342 helix_turn_helix, arabinose operon control protein AL541_15525 SM00062 Bacterial periplasmic substrate-binding proteins AL541_15525 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_15535 SM00829 Enoylreductase AL541_15545 SM00382 ATPases associated with a variety of cellular activities AL541_15555 SM00062 Bacterial periplasmic substrate-binding proteins AL541_15555 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_15605 SM00530 Helix-turn-helix XRE-family like proteins AL541_15630 SM00020 Trypsin-like serine protease AL541_15630 SM00495 Chitin-binding domain type 3 AL541_15665 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_15665 SM00895 AL541_15665 AL541_15770 SM00382 ATPases associated with a variety of cellular activities AL541_15810 SM00342 helix_turn_helix, arabinose operon control protein AL541_15910 SM00342 helix_turn_helix, arabinose operon control protein AL541_15935 SM00382 ATPases associated with a variety of cellular activities AL541_15950 SM01350 AL541_15950 AL541_15965 SM00342 helix_turn_helix, arabinose operon control protein AL541_15965 SM00871 Bacterial transcription activator, effector binding domain AL541_15975 SM00448 cheY-homologous receiver domain AL541_15980 SM00091 PAS domain AL541_15980 SM00387 Histidine kinase-like ATPases AL541_16065 SM00155 Phospholipase D. Active site motifs. AL541_16110 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL541_16120 SM01266 AL541_16120 AL541_16485 SM00860 SMI1 / KNR4 family AL541_16600 SM00901 AL541_16600 AL541_16700 SM00974 AL541_16700 AL541_17050 SM00255 Toll - interleukin 1 - resistance AL541_17280 SM00530 Helix-turn-helix XRE-family like proteins AL541_17380 SM00382 ATPases associated with a variety of cellular activities AL541_17385 SM00823 Phosphopantetheine attachment site AL541_17385 SM00824 Thioesterase AL541_17390 SM00923 MbtH-like protein AL541_17420 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_17420 SM00419 helix_turn_helix, cAMP Regulatory protein AL541_17425 SM00028 Tetratricopeptide repeats AL541_17495 SM00954 Region found in RelA / SpoT proteins AL541_17870 SM00357 Cold shock protein domain AL541_17925 SM00091 PAS domain AL541_17925 SM00382 ATPases associated with a variety of cellular activities AL541_17960 SM00387 Histidine kinase-like ATPases AL541_17960 SM00388 His Kinase A (phosphoacceptor) domain AL541_17960 SM00448 cheY-homologous receiver domain AL541_17985 SM00052 Putative diguanylate phosphodiesterase AL541_18000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_18000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_18015 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_18040 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_18040 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_18045 SM00479 AL541_18045 AL541_18050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_18050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_18060 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_18065 SM00421 helix_turn_helix, Lux Regulon AL541_18065 SM00448 cheY-homologous receiver domain AL541_18070 SM00387 Histidine kinase-like ATPases AL541_18070 SM01049 AL541_18070 AL541_18100 SM00849 Metallo-beta-lactamase superfamily AL541_18190 SM00434 DNA Topoisomerase IV AL541_18220 SM00852 Probable molybdopterin binding domain AL541_18275 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL541_18275 SM00465 GIY-YIG type nucleases (URI domain) AL541_18280 SM00421 helix_turn_helix, Lux Regulon AL541_18280 SM00448 cheY-homologous receiver domain AL541_18285 SM00486 DNA polymerase type-B family AL541_18295 SM00841 Elongation factor P, C-terminal AL541_18295 SM01185 AL541_18295 AL541_18305 SM00363 S4 RNA-binding domain AL541_18320 SM00481 DNA polymerase alpha chain like domain AL541_18360 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_18360 SM00419 helix_turn_helix, cAMP Regulatory protein AL541_18385 SM00387 Histidine kinase-like ATPases AL541_18385 SM00388 His Kinase A (phosphoacceptor) domain AL541_18385 SM00448 cheY-homologous receiver domain AL541_18435 SM00052 Putative diguanylate phosphodiesterase AL541_18435 SM00091 PAS domain AL541_18440 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_18470 SM00448 cheY-homologous receiver domain AL541_18470 SM00862 Transcriptional regulatory protein, C terminal AL541_18475 SM00387 Histidine kinase-like ATPases AL541_18475 SM00388 His Kinase A (phosphoacceptor) domain AL541_18480 SM00220 Serine/Threonine protein kinases, catalytic domain AL541_18480 SM00364 Leucine-rich repeats, bacterial type AL541_18480 SM00369 Leucine-rich repeats, typical (most populated) subfamily AL541_18530 SM00382 ATPases associated with a variety of cellular activities AL541_18585 SM00421 helix_turn_helix, Lux Regulon AL541_18585 SM00448 cheY-homologous receiver domain AL541_18590 SM00387 Histidine kinase-like ATPases AL541_18590 SM00388 His Kinase A (phosphoacceptor) domain AL541_18605 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_18650 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL541_18655 SM00028 Tetratricopeptide repeats AL541_18665 SM00411 bacterial (prokaryotic) histone like domain AL541_18670 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_18685 SM00822 AL541_18685 AL541_18700 SM00481 DNA polymerase alpha chain like domain AL541_18705 SM00260 Two component signalling adaptor domain AL541_18705 SM00448 cheY-homologous receiver domain AL541_18775 SM00825 Beta-ketoacyl synthase AL541_18785 SM00822 AL541_18785 AL541_18790 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL541_18820 SM00363 S4 RNA-binding domain AL541_18830 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_18845 SM00226 Low molecular weight phosphatase family AL541_18890 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_18915 SM00267 diguanylate cyclase AL541_18920 SM00642 Alpha-amylase domain AL541_18925 SM00382 ATPases associated with a variety of cellular activities AL541_18965 SM00382 ATPases associated with a variety of cellular activities AL541_18970 SM00382 ATPases associated with a variety of cellular activities AL541_19005 SM00852 Probable molybdopterin binding domain AL541_19010 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_19025 SM00382 ATPases associated with a variety of cellular activities AL541_19025 SM00448 cheY-homologous receiver domain AL541_19030 SM00487 DEAD-like helicases superfamily AL541_19030 SM00490 helicase superfamily c-terminal domain AL541_19065 SM00900 AL541_19065 AL541_19075 SM00478 endonuclease III AL541_19075 SM00525 AL541_19075 AL541_19100 SM00479 AL541_19100 AL541_19165 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL541_19220 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL541_19220 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL541_19220 SM00493 AL541_19220 AL541_19245 SM00870 AL541_19245 AL541_19265 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_19275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_19275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_19300 SM00098 Alkaline phosphatase homologues AL541_19345 SM00493 AL541_19345 AL541_19355 SM00382 ATPases associated with a variety of cellular activities AL541_19375 SM00448 cheY-homologous receiver domain AL541_19425 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL541_19440 SM00825 Beta-ketoacyl synthase AL541_19490 SM00463 Small MutS-related domain AL541_19495 SM00855 Phosphoglycerate mutase family AL541_19590 SM00382 ATPases associated with a variety of cellular activities AL541_19600 SM00260 Two component signalling adaptor domain AL541_19605 SM00260 Two component signalling adaptor domain AL541_19615 SM00448 cheY-homologous receiver domain AL541_19620 SM00073 Histidine Phosphotransfer domain AL541_19620 SM00260 Two component signalling adaptor domain AL541_19620 SM00387 Histidine kinase-like ATPases AL541_19620 SM01231 AL541_19620 AL541_19630 SM00448 cheY-homologous receiver domain AL541_19645 SM00382 ATPases associated with a variety of cellular activities AL541_19645 SM00962 SRP54-type protein, GTPase domain AL541_19710 SM00382 ATPases associated with a variety of cellular activities AL541_19735 SM00382 ATPases associated with a variety of cellular activities AL541_19735 SM00448 cheY-homologous receiver domain AL541_19740 SM00387 Histidine kinase-like ATPases AL541_19740 SM00388 His Kinase A (phosphoacceptor) domain AL541_19745 SM00382 ATPases associated with a variety of cellular activities AL541_19840 SM01130 AL541_19840 AL541_19865 SM00028 Tetratricopeptide repeats AL541_19950 SM00479 AL541_19950 AL541_19965 SM00849 Metallo-beta-lactamase superfamily AL541_19970 SM00257 Lysin motif AL541_19985 SM00938 Nitrogen regulatory protein P-II AL541_19995 SM00977 TilS substrate C-terminal domain AL541_20005 SM00481 DNA polymerase alpha chain like domain AL541_20035 SM00935 Outer membrane protein (OmpH-like) AL541_20045 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL541_20090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_20150 SM00849 Metallo-beta-lactamase superfamily AL541_20215 SM00495 Chitin-binding domain type 3 AL541_20215 SM00636 AL541_20215 AL541_20230 SM00487 DEAD-like helicases superfamily AL541_20230 SM00490 helicase superfamily c-terminal domain AL541_20245 SM00267 diguanylate cyclase AL541_20245 SM00448 cheY-homologous receiver domain AL541_20275 SM00900 AL541_20275 AL541_20335 SM00464 Found in ATP-dependent protease La (LON) AL541_20365 SM00267 diguanylate cyclase AL541_20380 SM00925 MltA specific insert domain AL541_20495 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_20495 SM01134 AL541_20495 AL541_20525 SM00354 helix_turn _helix lactose operon repressor AL541_20540 SM00421 helix_turn_helix, Lux Regulon AL541_20585 SM00838 Elongation factor G C-terminus AL541_20585 SM00889 Elongation factor G, domain IV AL541_20590 SM00382 ATPases associated with a variety of cellular activities AL541_20620 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AL541_20625 SM01133 AL541_20625 AL541_20680 SM00052 Putative diguanylate phosphodiesterase AL541_20680 SM00091 PAS domain AL541_20680 SM00267 diguanylate cyclase AL541_20700 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_20705 SM00028 Tetratricopeptide repeats AL541_20710 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_20710 SM00322 K homology RNA-binding domain AL541_20715 SM01387 AL541_20715 AL541_20735 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_20775 SM00382 ATPases associated with a variety of cellular activities AL541_20785 SM01103 AL541_20785 AL541_20810 SM00363 S4 RNA-binding domain AL541_20850 SM00091 PAS domain AL541_20850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_20850 SM00387 Histidine kinase-like ATPases AL541_20850 SM00388 His Kinase A (phosphoacceptor) domain AL541_20850 SM00448 cheY-homologous receiver domain AL541_20870 SM00382 ATPases associated with a variety of cellular activities AL541_20875 SM00382 ATPases associated with a variety of cellular activities AL541_20895 SM01068 Putative carbohydrate binding domain AL541_20905 SM00382 ATPases associated with a variety of cellular activities AL541_20925 SM00938 Nitrogen regulatory protein P-II AL541_20950 SM00487 DEAD-like helicases superfamily AL541_20950 SM00490 helicase superfamily c-terminal domain AL541_20950 SM00847 Helicase associated domain (HA2) Add an annotation AL541_21005 SM00382 ATPases associated with a variety of cellular activities AL541_21015 SM00947 Carbonic anhydrase AL541_21045 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_21045 SM00895 AL541_21045 AL541_21050 SM00644 AL541_21050 AL541_21115 SM00382 ATPases associated with a variety of cellular activities AL541_21115 SM00962 SRP54-type protein, GTPase domain AL541_21115 SM00963 SRP54-type protein, helical bundle domain AL541_21125 SM01091 Transporter associated domain AL541_21155 SM00829 Enoylreductase AL541_21235 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL541_21245 SM00382 ATPases associated with a variety of cellular activities AL541_21255 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AL541_21255 SM00534 ATPase domain of DNA mismatch repair MUTS family AL541_21265 SM00257 Lysin motif AL541_21300 SM01192 AL541_21300 AL541_21300 SM01193 AL541_21300 AL541_21315 SM00954 Region found in RelA / SpoT proteins AL541_21335 SM00073 Histidine Phosphotransfer domain AL541_21335 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_21335 SM00387 Histidine kinase-like ATPases AL541_21335 SM00388 His Kinase A (phosphoacceptor) domain AL541_21335 SM00448 cheY-homologous receiver domain AL541_21360 SM00358 Double-stranded RNA binding motif AL541_21360 SM00535 Ribonuclease III family AL541_21370 SM00838 Elongation factor G C-terminus AL541_21510 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_21525 SM00861 Transketolase, pyrimidine binding domain AL541_21545 SM00731 SprT homologues. AL541_21570 SM00732 Likely ribonuclease with RNase H fold. AL541_21580 SM00382 ATPases associated with a variety of cellular activities AL541_21600 SM01152 AL541_21600 AL541_21615 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_21635 SM00478 endonuclease III AL541_21635 SM00525 AL541_21635 AL541_21685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_21685 SM01049 AL541_21685 AL541_21765 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_21770 SM00354 helix_turn _helix lactose operon repressor AL541_21800 SM00495 Chitin-binding domain type 3 AL541_21940 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_21985 SM00563 Phosphate acyltransferases AL541_22020 SM00382 ATPases associated with a variety of cellular activities AL541_22030 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_22045 SM00382 ATPases associated with a variety of cellular activities AL541_22075 SM00924 MgtE intracellular N domain AL541_22105 SM00487 DEAD-like helicases superfamily AL541_22105 SM00490 helicase superfamily c-terminal domain AL541_22110 SM00670 Large family of predicted nucleotide-binding domains AL541_22130 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_22200 SM00382 ATPases associated with a variety of cellular activities AL541_22205 SM00028 Tetratricopeptide repeats AL541_22215 SM00965 Secretin and TonB N terminus short domain AL541_22235 SM00052 Putative diguanylate phosphodiesterase AL541_22235 SM00267 diguanylate cyclase AL541_22245 SM00421 helix_turn_helix, Lux Regulon AL541_22280 SM01018 B12 binding domain AL541_22400 SM01005 Alanine racemase, C-terminal domain AL541_22460 SM00965 Secretin and TonB N terminus short domain AL541_22480 SM00842 Cell division protein FtsA AL541_22525 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL541_22565 SM00919 Malic enzyme, NAD binding domain AL541_22565 SM01274 AL541_22565 AL541_22585 SM00838 Elongation factor G C-terminus AL541_22585 SM00889 Elongation factor G, domain IV AL541_22625 SM00320 WD40 repeats AL541_22665 SM00382 ATPases associated with a variety of cellular activities AL541_22690 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_22690 SM00419 helix_turn_helix, cAMP Regulatory protein AL541_22695 SM01150 AL541_22695 AL541_22740 SM00967 RNA 2'-O ribose methyltransferase substrate binding AL541_22745 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_22745 SM00357 Cold shock protein domain AL541_22745 SM00955 AL541_22745 AL541_22760 SM00671 Sel1-like repeats. AL541_22770 SM00788 Adenylosuccinate synthetase AL541_22780 SM00244 prohibitin homologues AL541_22785 SM00244 prohibitin homologues AL541_22805 SM00853 MutL C terminal dimerisation domain AL541_22805 SM01340 AL541_22805 AL541_22810 SM00257 Lysin motif AL541_22810 SM00646 AL541_22810 AL541_22890 SM00479 AL541_22890 AL541_22920 SM00450 Rhodanese Homology Domain AL541_22935 SM00971 Serine acetyltransferase, N-terminal AL541_22990 SM00841 Elongation factor P, C-terminal AL541_22990 SM01185 AL541_22990 AL541_23015 SM00883 Chaperonin 10 Kd subunit AL541_23040 SM00448 cheY-homologous receiver domain AL541_23040 SM00862 Transcriptional regulatory protein, C terminal AL541_23045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_23045 SM00387 Histidine kinase-like ATPases AL541_23045 SM00388 His Kinase A (phosphoacceptor) domain AL541_23080 SM00421 helix_turn_helix, Lux Regulon AL541_23080 SM00448 cheY-homologous receiver domain AL541_23085 SM01091 Transporter associated domain AL541_23115 SM00387 Histidine kinase-like ATPases AL541_23115 SM00388 His Kinase A (phosphoacceptor) domain AL541_23115 SM00448 cheY-homologous receiver domain AL541_23130 SM00479 AL541_23130 AL541_23150 SM00878 Biotin carboxylase C-terminal domain AL541_23180 SM00382 ATPases associated with a variety of cellular activities AL541_23250 SM00862 Transcriptional regulatory protein, C terminal AL541_23255 SM00422 helix_turn_helix, mercury resistance AL541_23265 SM00798 AICARFT/IMPCHase bienzyme AL541_23265 SM00851 MGS-like domain AL541_23270 SM01209 AL541_23270 AL541_23270 SM01210 AL541_23270 AL541_23280 SM00411 bacterial (prokaryotic) histone like domain AL541_23285 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_23300 SM00986 Uracil DNA glycosylase superfamily AL541_23300 SM00987 UreE urease accessory protein, C-terminal domain AL541_23320 SM00663 RNA polymerase I subunit A N-terminus AL541_23345 SM00649 Ribosomal protein L11/L12 AL541_23350 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL541_23350 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL541_23415 SM00155 Phospholipase D. Active site motifs. AL541_23475 SM00360 RNA recognition motif AL541_23540 SM00563 Phosphate acyltransferases AL541_23565 SM00450 Rhodanese Homology Domain AL541_23585 SM00382 ATPases associated with a variety of cellular activities AL541_23590 SM00382 ATPases associated with a variety of cellular activities AL541_23590 SM00962 SRP54-type protein, GTPase domain AL541_23590 SM00963 SRP54-type protein, helical bundle domain AL541_23650 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_23655 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_23660 SM00052 Putative diguanylate phosphodiesterase AL541_23690 SM01144 AL541_23690 AL541_23695 SM00052 Putative diguanylate phosphodiesterase AL541_23695 SM00897 FIST N domain AL541_23695 SM01204 AL541_23695 AL541_23730 SM01219 AL541_23730 AL541_23755 SM00028 Tetratricopeptide repeats AL541_23815 SM00357 Cold shock protein domain AL541_23815 SM00382 ATPases associated with a variety of cellular activities AL541_23815 SM00959 Rho termination factor, N-terminal domain AL541_23825 SM00487 DEAD-like helicases superfamily AL541_23825 SM00490 helicase superfamily c-terminal domain AL541_23855 SM00341 Helicase and RNase D C-terminal AL541_23855 SM00487 DEAD-like helicases superfamily AL541_23855 SM00490 helicase superfamily c-terminal domain AL541_23855 SM00956 AL541_23855 AL541_23865 SM00342 helix_turn_helix, arabinose operon control protein AL541_23930 SM00876 Biotin and Thiamin Synthesis associated domain AL541_24035 SM01001 AIR carboxylase AL541_24065 SM00257 Lysin motif AL541_24135 SM00563 Phosphate acyltransferases AL541_24145 SM00382 ATPases associated with a variety of cellular activities AL541_24185 SM00062 Bacterial periplasmic substrate-binding proteins AL541_24205 SM00382 ATPases associated with a variety of cellular activities AL541_24245 SM00470 ParB-like nuclease domain AL541_24260 SM01228 AL541_24260 AL541_24280 SM01234 AL541_24280 AL541_24295 SM00382 ATPases associated with a variety of cellular activities AL541_24305 SM00062 Bacterial periplasmic substrate-binding proteins AL541_24305 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_24315 SM00382 ATPases associated with a variety of cellular activities AL541_24315 SM00760 Bacterial dnaA protein helix-turn-helix domain AL541_24320 SM00480 DNA polymerase III beta subunit AL541_24330 SM00387 Histidine kinase-like ATPases AL541_24330 SM00433 TopoisomeraseII AL541_24360 SM00642 Alpha-amylase domain AL541_24400 SM00829 Enoylreductase AL541_24540 SM00382 ATPases associated with a variety of cellular activities AL541_24590 SM00220 Serine/Threonine protein kinases, catalytic domain AL541_24595 SM00354 helix_turn _helix lactose operon repressor AL541_24660 SM00344 helix_turn_helix ASNC type AL541_24665 SM00052 Putative diguanylate phosphodiesterase AL541_24665 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_24665 SM00091 PAS domain AL541_24665 SM00267 diguanylate cyclase AL541_24705 SM00382 ATPases associated with a variety of cellular activities AL541_24710 SM00749 bacterial OsmY and nodulation domain AL541_24730 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL541_24730 SM00195 Dual specificity phosphatase, catalytic domain AL541_24730 SM00404 Protein tyrosine phosphatase, catalytic domain motif AL541_24765 SM00052 Putative diguanylate phosphodiesterase AL541_24765 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_24765 SM00091 PAS domain AL541_24765 SM00267 diguanylate cyclase AL541_24825 SM01004 Delta-aminolevulinic acid dehydratase AL541_24840 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL541_24840 SM00474 3'-5' exonuclease AL541_24840 SM00475 5'-3' exonuclease AL541_24840 SM00482 DNA polymerase A domain AL541_24875 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_24885 SM00052 Putative diguanylate phosphodiesterase AL541_24885 SM00267 diguanylate cyclase AL541_24885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_24890 SM00382 ATPases associated with a variety of cellular activities AL541_24890 SM00448 cheY-homologous receiver domain AL541_24895 SM00091 PAS domain AL541_24895 SM00387 Histidine kinase-like ATPases AL541_24895 SM00388 His Kinase A (phosphoacceptor) domain AL541_24905 SM01230 AL541_24905 AL541_24955 SM00363 S4 RNA-binding domain AL541_24970 SM00382 ATPases associated with a variety of cellular activities AL541_25050 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_25050 SM00732 Likely ribonuclease with RNase H fold. AL541_25070 SM00448 cheY-homologous receiver domain AL541_25070 SM00862 Transcriptional regulatory protein, C terminal AL541_25075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_25075 SM00387 Histidine kinase-like ATPases AL541_25075 SM00388 His Kinase A (phosphoacceptor) domain AL541_25085 SM00487 DEAD-like helicases superfamily AL541_25085 SM00490 helicase superfamily c-terminal domain AL541_25095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_25095 SM00954 Region found in RelA / SpoT proteins AL541_25100 SM01409 AL541_25100 AL541_25105 SM00072 Guanylate kinase homologues. AL541_25115 SM00028 Tetratricopeptide repeats AL541_25170 SM00382 ATPases associated with a variety of cellular activities AL541_25175 SM00382 ATPases associated with a variety of cellular activities AL541_25225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_25225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_25225 SM01049 AL541_25225 AL541_25250 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AL541_25250 SM01232 AL541_25250 AL541_25260 SM00672 Putative lipopolysaccharide-modifying enzyme. AL541_25490 SM00984 UDP binding domain AL541_25500 SM00849 Metallo-beta-lactamase superfamily AL541_25500 SM01027 Beta-Casp domain