locus-tag class description K04M1_00010 PF00308 Bacterial dnaA protein K04M1_00010 PF08299 Bacterial dnaA protein helix-turn-helix K04M1_00010 PF11638 DnaA N-terminal domain K04M1_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain K04M1_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain K04M1_00020 PF02767 DNA polymerase III beta subunit, central domain K04M1_00030 PF02463 RecF/RecN/SMC N terminal domain K04M1_00040 PF00986 DNA gyrase B subunit, carboxyl terminus K04M1_00040 PF00204 DNA gyrase B K04M1_00040 PF18053 DNA gyrase B subunit insert domain K04M1_00040 PF01751 Toprim domain K04M1_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_00070 PF00011 Hsp20/alpha crystallin family K04M1_00080 PF00155 Aminotransferase class I and II K04M1_00090 PF00128 Alpha amylase, catalytic domain K04M1_00100 PF05746 DALR anticodon binding domain K04M1_00100 PF02092 Glycyl-tRNA synthetase beta subunit K04M1_00110 PF02091 Glycyl-tRNA synthetase alpha subunit K04M1_00120 PF01169 Uncharacterized protein family UPF0016 K04M1_00140 PF01206 Sulfurtransferase TusA K04M1_00160 PF03466 LysR substrate binding domain K04M1_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_00170 PF08240 Alcohol dehydrogenase GroES-like domain K04M1_00170 PF00107 Zinc-binding dehydrogenase K04M1_00180 PF00108 Thiolase, N-terminal domain K04M1_00180 PF02803 Thiolase, C-terminal domain K04M1_00190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K04M1_00190 PF00378 Enoyl-CoA hydratase/isomerase K04M1_00190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K04M1_00200 PF01205 Uncharacterized protein family UPF0029 K04M1_00200 PF09186 Domain of unknown function (DUF1949) K04M1_00210 PF02386 Cation transport protein K04M1_00220 PF12724 Flavodoxin domain K04M1_00290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_00290 PF03466 LysR substrate binding domain K04M1_00300 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain K04M1_00300 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain K04M1_00310 PF04380 Membrane fusogenic activity K04M1_00320 PF00873 AcrB/AcrD/AcrF family K04M1_00330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_00340 PF16295 Tetracyclin repressor-like, C-terminal domain K04M1_00340 PF00440 Bacterial regulatory proteins, tetR family K04M1_00350 PF00580 UvrD/REP helicase N-terminal domain K04M1_00350 PF13361 UvrD-like helicase C-terminal domain K04M1_00360 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K04M1_00420 PF13419 Haloacid dehalogenase-like hydrolase K04M1_00430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_00430 PF00005 ABC transporter K04M1_00440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_00460 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_00460 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M1_00480 PF00356 Bacterial regulatory proteins, lacI family K04M1_00480 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K04M1_00490 PF03466 LysR substrate binding domain K04M1_00490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_00500 PF00893 Small Multidrug Resistance protein K04M1_00510 PF00893 Small Multidrug Resistance protein K04M1_00520 PF00920 Dehydratase family K04M1_00530 PF01202 Shikimate kinase K04M1_00540 PF02447 GntP family permease K04M1_00550 PF01081 KDPG and KHG aldolase K04M1_00560 PF01048 Phosphorylase superfamily K04M1_00570 PF03466 LysR substrate binding domain K04M1_00570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_00580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M1_00580 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_00590 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ K04M1_00600 PF01432 Peptidase family M3 K04M1_00610 PF01037 Lrp/AsnC ligand binding domain K04M1_00620 PF00990 Diguanylate cyclase, GGDEF domain K04M1_00620 PF00563 EAL domain K04M1_00620 PF08448 PAS fold K04M1_00630 PF04445 Putative SAM-dependent methyltransferase K04M1_00650 PF00892 EamA-like transporter family K04M1_00660 PF00582 Universal stress protein family K04M1_00670 PF00210 Ferritin-like domain K04M1_00680 PF10625 Universal stress protein B (UspB) K04M1_00700 PF01590 GAF domain K04M1_00700 PF02954 Bacterial regulatory protein, Fis family K04M1_00700 PF00158 Sigma-54 interaction domain K04M1_00750 PF00781 Diacylglycerol kinase catalytic domain K04M1_00810 PF01594 AI-2E family transporter K04M1_00820 PF03707 Bacterial signalling protein N terminal repeat K04M1_00820 PF00563 EAL domain K04M1_00820 PF00990 Diguanylate cyclase, GGDEF domain K04M1_00840 PF02646 RmuC family K04M1_00850 PF01209 ubiE/COQ5 methyltransferase family K04M1_00860 PF02036 SCP-2 sterol transfer family K04M1_00870 PF03109 ABC1 family K04M1_00880 PF02416 mttA/Hcf106 family K04M1_00890 PF02416 mttA/Hcf106 family K04M1_00900 PF00902 Sec-independent protein translocase protein (TatC) K04M1_00910 PF01026 TatD related DNase K04M1_00920 PF00490 Delta-aminolevulinic acid dehydratase K04M1_00930 PF00583 Acetyltransferase (GNAT) family K04M1_00950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K04M1_00950 PF01612 3'-5' exonuclease K04M1_00950 PF00476 DNA polymerase family A K04M1_00950 PF01367 5'-3' exonuclease, C-terminal SAM fold K04M1_00960 PF01926 50S ribosome-binding GTPase K04M1_00970 PF00034 Cytochrome c K04M1_00990 PF04220 Der GTPase activator (YihI) K04M1_01000 PF10675 Protein of unknown function (DUF2489) K04M1_01010 PF04055 Radical SAM superfamily K04M1_01010 PF06969 HemN C-terminal domain K04M1_01020 PF00962 Adenosine/AMP deaminase K04M1_01030 PF00990 Diguanylate cyclase, GGDEF domain K04M1_01030 PF00563 EAL domain K04M1_01030 PF03707 Bacterial signalling protein N terminal repeat K04M1_01040 PF02954 Bacterial regulatory protein, Fis family K04M1_01040 PF00072 Response regulator receiver domain K04M1_01040 PF00158 Sigma-54 interaction domain K04M1_01050 PF00512 His Kinase A (phospho-acceptor) domain K04M1_01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_01050 PF00989 PAS fold K04M1_01070 PF03951 Glutamine synthetase, beta-Grasp domain K04M1_01070 PF00120 Glutamine synthetase, catalytic domain K04M1_01090 PF00308 Bacterial dnaA protein K04M1_01090 PF08299 Bacterial dnaA protein helix-turn-helix K04M1_01110 PF03631 Virulence factor BrkB K04M1_01120 PF02580 D-Tyr-tRNA(Tyr) deacylase K04M1_01130 PF09500 Putative thioesterase (yiiD_Cterm) K04M1_01130 PF00583 Acetyltransferase (GNAT) family K04M1_01150 PF01293 Phosphoenolpyruvate carboxykinase K04M1_01160 PF01430 Hsp33 protein K04M1_01170 PF01479 S4 domain K04M1_01180 PF11356 Type II secretion system protein C K04M1_01190 PF03958 Bacterial type II/III secretion system short domain K04M1_01190 PF00263 Bacterial type II and III secretion system protein K04M1_01200 PF00437 Type II/IV secretion system protein K04M1_01210 PF00482 Type II secretion system (T2SS), protein F K04M1_01220 PF08334 Type II secretion system (T2SS), protein G K04M1_01220 PF07963 Prokaryotic N-terminal methylation motif K04M1_01230 PF12019 Type II transport protein GspH K04M1_01240 PF07963 Prokaryotic N-terminal methylation motif K04M1_01240 PF02501 Type II secretion system (T2SS), protein I K04M1_01250 PF11612 Type II secretion system (T2SS), protein J K04M1_01250 PF07963 Prokaryotic N-terminal methylation motif K04M1_01260 PF03934 Type II secretion system (T2SS), protein K K04M1_01270 PF12693 GspL periplasmic domain K04M1_01270 PF05134 Type II secretion system (T2SS), protein L K04M1_01280 PF04612 Type II secretion system (T2SS), protein M K04M1_01290 PF01203 Type II secretion system (T2SS), protein N K04M1_01300 PF00459 Inositol monophosphatase family K04M1_01310 PF00293 NUDIX domain K04M1_01320 PF01106 NifU-like domain K04M1_01320 PF01521 Iron-sulphur cluster biosynthesis K04M1_01330 PF00156 Phosphoribosyl transferase domain K04M1_01340 PF00561 alpha/beta hydrolase fold K04M1_01360 PF00575 S1 RNA binding domain K04M1_01360 PF09371 Tex-like protein N-terminal domain K04M1_01360 PF16921 Tex protein YqgF-like domain K04M1_01360 PF17674 HHH domain K04M1_01380 PF03449 Transcription elongation factor, N-terminal K04M1_01380 PF01272 Transcription elongation factor, GreA/GreB, C-term K04M1_01400 PF00072 Response regulator receiver domain K04M1_01400 PF00486 Transcriptional regulatory protein, C terminal K04M1_01410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_01410 PF00512 His Kinase A (phospho-acceptor) domain K04M1_01410 PF00672 HAMP domain K04M1_01420 PF00860 Permease family K04M1_01430 PF17191 RecG wedge domain K04M1_01430 PF00271 Helicase conserved C-terminal domain K04M1_01430 PF00270 DEAD/DEAH box helicase K04M1_01440 PF00588 SpoU rRNA Methylase family K04M1_01440 PF12105 SpoU, rRNA methylase, C-terminal K04M1_01450 PF13291 ACT domain K04M1_01450 PF04607 Region found in RelA / SpoT proteins K04M1_01450 PF02824 TGS domain K04M1_01460 PF01192 RNA polymerase Rpb6 K04M1_01470 PF00625 Guanylate kinase K04M1_01500 PF02472 Biopolymer transport protein ExbD/TolR K04M1_01510 PF01618 MotA/TolQ/ExbB proton channel family K04M1_01540 PF07715 TonB-dependent Receptor Plug Domain K04M1_01540 PF00593 TonB dependent receptor K04M1_01550 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_01560 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_01560 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M1_01570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_01580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_01580 PF00005 ABC transporter K04M1_01590 PF00005 ABC transporter K04M1_01590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_01610 PF03755 YicC-like family, N-terminal region K04M1_01610 PF08340 Domain of unknown function (DUF1732) K04M1_01620 PF03725 3' exoribonuclease family, domain 2 K04M1_01620 PF01138 3' exoribonuclease family, domain 1 K04M1_01630 PF00156 Phosphoribosyl transferase domain K04M1_01640 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M1_01650 PF00440 Bacterial regulatory proteins, tetR family K04M1_01660 PF02441 Flavoprotein K04M1_01660 PF04127 DNA / pantothenate metabolism flavoprotein K04M1_01670 PF17200 Single Cache domain 2 K04M1_01670 PF00672 HAMP domain K04M1_01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_01680 PF04002 RadC-like JAB domain K04M1_01690 PF00830 Ribosomal L28 family K04M1_01700 PF00471 Ribosomal protein L33 K04M1_01720 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain K04M1_01720 PF06827 Zinc finger found in FPG and IleRS K04M1_01720 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain K04M1_01730 PF01467 Cytidylyltransferase-like K04M1_01740 PF05686 Glycosyl transferase family 90 K04M1_01750 PF00535 Glycosyl transferase family 2 K04M1_01760 PF00535 Glycosyl transferase family 2 K04M1_01770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K04M1_01780 PF01219 Prokaryotic diacylglycerol kinase K04M1_01800 PF16363 GDP-mannose 4,6 dehydratase K04M1_01810 PF00483 Nucleotidyl transferase K04M1_01820 PF05523 WxcM-like, C-terminal K04M1_01840 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K04M1_01890 PF00682 HMGL-like K04M1_01890 PF07836 DmpG-like communication domain K04M1_01900 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K04M1_01910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K04M1_01930 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M1_01960 PF01370 NAD dependent epimerase/dehydratase family K04M1_02100 PF00483 Nucleotidyl transferase K04M1_02110 PF00483 Nucleotidyl transferase K04M1_02220 PF07836 DmpG-like communication domain K04M1_02220 PF00682 HMGL-like K04M1_02230 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K04M1_02240 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K04M1_02260 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M1_02290 PF01370 NAD dependent epimerase/dehydratase family K04M1_02300 PF06082 Exopolysaccharide biosynthesis protein YbjH K04M1_02350 PF02563 Polysaccharide biosynthesis/export protein K04M1_02350 PF10531 SLBB domain K04M1_02350 PF18412 Outer-membrane lipoprotein Wza C-terminal domain K04M1_02400 PF00534 Glycosyl transferases group 1 K04M1_02400 PF13439 Glycosyltransferase Family 4 K04M1_02420 PF13439 Glycosyltransferase Family 4 K04M1_02420 PF00534 Glycosyl transferases group 1 K04M1_02430 PF00534 Glycosyl transferases group 1 K04M1_02430 PF13439 Glycosyltransferase Family 4 K04M1_02440 PF02397 Bacterial sugar transferase K04M1_02450 PF00753 Metallo-beta-lactamase superfamily K04M1_02450 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain K04M1_02450 PF10996 Beta-Casp domain K04M1_02460 PF00953 Glycosyl transferase family 4 K04M1_02510 PF00535 Glycosyl transferase family 2 K04M1_02520 PF00535 Glycosyl transferase family 2 K04M1_02540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain K04M1_02540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain K04M1_02540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K04M1_02550 PF01370 NAD dependent epimerase/dehydratase family K04M1_02560 PF00483 Nucleotidyl transferase K04M1_02570 PF00121 Triosephosphate isomerase K04M1_02610 PF00455 DeoR C terminal sensor domain K04M1_02610 PF08220 DeoR-like helix-turn-helix domain K04M1_02620 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K04M1_02630 PF06005 Cell division protein ZapB K04M1_02640 PF03737 Aldolase/RraA K04M1_02650 PF01040 UbiA prenyltransferase family K04M1_02710 PF04002 RadC-like JAB domain K04M1_02740 PF00072 Response regulator receiver domain K04M1_02740 PF12431 Transcriptional regulator K04M1_02750 PF17203 Single cache domain 3 K04M1_02750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_02760 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit K04M1_02770 PF00682 HMGL-like K04M1_02770 PF02436 Conserved carboxylase domain K04M1_02770 PF00364 Biotin-requiring enzyme K04M1_02780 PF04277 Oxaloacetate decarboxylase, gamma chain K04M1_02790 PF03390 2-hydroxycarboxylate transporter family K04M1_02800 PF08218 Citrate lyase ligase C-terminal domain K04M1_02810 PF06857 Malonate decarboxylase delta subunit (MdcD) K04M1_02820 PF03328 HpcH/HpaI aldolase/citrate lyase family K04M1_02830 PF04223 Citrate lyase, alpha subunit (CitF) K04M1_02840 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase K04M1_02850 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase K04M1_02880 PF07724 AAA domain (Cdc48 subfamily) K04M1_02880 PF00004 ATPase family associated with various cellular activities (AAA) K04M1_02890 PF00227 Proteasome subunit K04M1_02920 PF00356 Bacterial regulatory proteins, lacI family K04M1_02930 PF18319 PriA DNA helicase Cys-rich region (CRR) domain K04M1_02930 PF18074 Primosomal protein N C-terminal domain K04M1_02930 PF17764 3′ DNA-binding domain (3′BD) K04M1_02930 PF00270 DEAD/DEAH box helicase K04M1_02930 PF00271 Helicase conserved C-terminal domain K04M1_02940 PF01197 Ribosomal protein L31 K04M1_02950 PF00338 Ribosomal protein S10p/S20e K04M1_02960 PF00297 Ribosomal protein L3 K04M1_02970 PF00573 Ribosomal protein L4/L1 family K04M1_02980 PF00276 Ribosomal protein L23 K04M1_02990 PF03947 Ribosomal Proteins L2, C-terminal domain K04M1_02990 PF00181 Ribosomal Proteins L2, RNA binding domain K04M1_03000 PF00203 Ribosomal protein S19 K04M1_03010 PF00237 Ribosomal protein L22p/L17e K04M1_03020 PF07650 KH domain K04M1_03020 PF00189 Ribosomal protein S3, C-terminal domain K04M1_03030 PF00252 Ribosomal protein L16p/L10e K04M1_03040 PF00831 Ribosomal L29 protein K04M1_03050 PF00366 Ribosomal protein S17 K04M1_03060 PF00238 Ribosomal protein L14p/L23e K04M1_03070 PF00467 KOW motif K04M1_03070 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 K04M1_03080 PF00673 ribosomal L5P family C-terminus K04M1_03080 PF00281 Ribosomal protein L5 K04M1_03090 PF00253 Ribosomal protein S14p/S29e K04M1_03100 PF00410 Ribosomal protein S8 K04M1_03110 PF00347 Ribosomal protein L6 K04M1_03120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast K04M1_03130 PF00333 Ribosomal protein S5, N-terminal domain K04M1_03130 PF03719 Ribosomal protein S5, C-terminal domain K04M1_03140 PF00327 Ribosomal protein L30p/L7e K04M1_03160 PF00344 SecY translocase K04M1_03170 PF00444 Ribosomal protein L36 K04M1_03180 PF00416 Ribosomal protein S13/S18 K04M1_03190 PF00411 Ribosomal protein S11 K04M1_03200 PF01479 S4 domain K04M1_03200 PF00163 Ribosomal protein S4/S9 N-terminal domain K04M1_03210 PF01000 RNA polymerase Rpb3/RpoA insert domain K04M1_03210 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain K04M1_03210 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain K04M1_03220 PF01196 Ribosomal protein L17 K04M1_03240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K04M1_03240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M1_03260 PF13673 Acetyltransferase (GNAT) domain K04M1_03270 PF03880 DbpA RNA binding domain K04M1_03270 PF00271 Helicase conserved C-terminal domain K04M1_03270 PF00270 DEAD/DEAH box helicase K04M1_03290 PF02872 5'-nucleotidase, C-terminal domain K04M1_03290 PF00149 Calcineurin-like phosphoesterase K04M1_03300 PF10414 Sirohaem synthase dimerisation region K04M1_03300 PF14824 Sirohaem biosynthesis protein central K04M1_03300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M1_03310 PF01507 Phosphoadenosine phosphosulfate reductase family K04M1_03320 PF00009 Elongation factor Tu GTP binding domain K04M1_03330 PF03600 Citrate transporter K04M1_03330 PF02080 TrkA-C domain K04M1_03390 PF00005 ABC transporter K04M1_03410 PF10795 Protein of unknown function (DUF2607) K04M1_03420 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) K04M1_03430 PF06526 Protein of unknown function (DUF1107) K04M1_03440 PF01625 Peptide methionine sulfoxide reductase K04M1_03450 PF01103 Surface antigen K04M1_03450 PF17243 POTRA domain TamA domain 1 K04M1_03460 PF04357 TamB, inner membrane protein subunit of TAM complex K04M1_03470 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like K04M1_03490 PF00719 Inorganic pyrophosphatase K04M1_03500 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain K04M1_03510 PF02875 Mur ligase family, glutamate ligase domain K04M1_03510 PF01225 Mur ligase family, catalytic domain K04M1_03510 PF08245 Mur ligase middle domain K04M1_03520 PF02441 Flavoprotein K04M1_03540 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_03550 PF00005 ABC transporter K04M1_03560 PF03466 LysR substrate binding domain K04M1_03560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_03570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M1_03600 PF16868 NMT1-like family K04M1_03610 PF01316 Arginine repressor, DNA binding domain K04M1_03610 PF02863 Arginine repressor, C-terminal domain K04M1_03620 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain K04M1_03620 PF00056 lactate/malate dehydrogenase, NAD binding domain K04M1_03640 PF00348 Polyprenyl synthetase K04M1_03650 PF00829 Ribosomal prokaryotic L21 protein K04M1_03660 PF01016 Ribosomal L27 protein K04M1_03670 PF01018 GTP1/OBG K04M1_03670 PF01926 50S ribosome-binding GTPase K04M1_03680 PF06738 Putative threonine/serine exporter K04M1_03690 PF12821 Threonine/Serine exporter, ThrE K04M1_03700 PF00186 Dihydrofolate reductase K04M1_03710 PF00149 Calcineurin-like phosphoesterase K04M1_03720 PF04379 ApaG domain K04M1_03730 PF00398 Ribosomal RNA adenine dimethylase K04M1_03740 PF04166 Pyridoxal phosphate biosynthetic protein PdxA K04M1_03750 PF09312 SurA N-terminal domain K04M1_03760 PF03968 OstA-like protein K04M1_03760 PF04453 LPS transport system D K04M1_03770 PF05099 Tellurite resistance protein TerB K04M1_03770 PF00226 DnaJ domain K04M1_03790 PF00694 Aconitase C-terminal domain K04M1_03800 PF00330 Aconitase family (aconitate hydratase) K04M1_03810 PF00180 Isocitrate/isopropylmalate dehydrogenase K04M1_03820 PF00682 HMGL-like K04M1_03820 PF08502 LeuA allosteric (dimerisation) domain K04M1_03840 PF01569 PAP2 superfamily K04M1_03860 PF03466 LysR substrate binding domain K04M1_03860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_03870 PF00501 AMP-binding enzyme K04M1_03880 PF00205 Thiamine pyrophosphate enzyme, central domain K04M1_03880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K04M1_03880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K04M1_03890 PF10369 Small subunit of acetolactate synthase K04M1_03900 PF00990 Diguanylate cyclase, GGDEF domain K04M1_03900 PF07694 5TMR of 5TMR-LYT K04M1_03920 PF00224 Pyruvate kinase, barrel domain K04M1_03920 PF02887 Pyruvate kinase, alpha/beta domain K04M1_03930 PF08220 DeoR-like helix-turn-helix domain K04M1_03930 PF00455 DeoR C terminal sensor domain K04M1_03940 PF01380 SIS domain K04M1_03950 PF00465 Iron-containing alcohol dehydrogenase K04M1_03960 PF02733 Dak1 domain K04M1_03970 PF02734 DAK2 domain K04M1_03980 PF05524 PEP-utilising enzyme, N-terminal K04M1_03980 PF02896 PEP-utilising enzyme, TIM barrel domain K04M1_03980 PF00391 PEP-utilising enzyme, mobile domain K04M1_03990 PF00158 Sigma-54 interaction domain K04M1_03990 PF02954 Bacterial regulatory protein, Fis family K04M1_03990 PF00989 PAS fold K04M1_04000 PF05068 Mannitol repressor K04M1_04010 PF01232 Mannitol dehydrogenase Rossmann domain K04M1_04010 PF08125 Mannitol dehydrogenase C-terminal domain K04M1_04020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K04M1_04020 PF02378 Phosphotransferase system, EIIC K04M1_04020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K04M1_04060 PF03180 NLPA lipoprotein K04M1_04080 PF04542 Sigma-70 region 2 K04M1_04080 PF04539 Sigma-70 region 3 K04M1_04080 PF00140 Sigma-70 factor, region 1.2 K04M1_04080 PF04546 Sigma-70, non-essential region K04M1_04080 PF03979 Sigma-70 factor, region 1.1 K04M1_04080 PF04545 Sigma-70, region 4 K04M1_04090 PF01807 CHC2 zinc finger K04M1_04090 PF10410 DnaB-helicase binding domain of primase K04M1_04090 PF08278 DNA primase DnaG DnaB-binding K04M1_04090 PF08275 DNA primase catalytic core, N-terminal domain K04M1_04100 PF09424 Yqey-like protein K04M1_04110 PF01165 Ribosomal protein S21 K04M1_04120 PF00814 Glycoprotease family K04M1_04130 PF00561 alpha/beta hydrolase fold K04M1_04140 PF02660 Glycerol-3-phosphate acyltransferase K04M1_04150 PF02152 Dihydroneopterin aldolase K04M1_04160 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K04M1_04170 PF02673 Bacitracin resistance protein BacA K04M1_04180 PF01743 Poly A polymerase head domain K04M1_04180 PF12627 Probable RNA and SrmB- binding site of polymerase A K04M1_04180 PF01966 HD domain K04M1_04190 PF01471 Putative peptidoglycan binding domain K04M1_04190 PF13401 AAA domain K04M1_04220 PF08239 Bacterial SH3 domain K04M1_04230 PF01384 Phosphate transporter family K04M1_04240 PF01865 Protein of unknown function DUF47 K04M1_04250 PF01928 CYTH domain K04M1_04270 PF02743 Cache domain K04M1_04270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_04270 PF00672 HAMP domain K04M1_04280 PF03710 Glutamate-ammonia ligase adenylyltransferase K04M1_04280 PF08335 GlnD PII-uridylyltransferase K04M1_04290 PF01467 Cytidylyltransferase-like K04M1_04290 PF00294 pfkB family carbohydrate kinase K04M1_04300 PF02321 Outer membrane efflux protein K04M1_04310 PF00293 NUDIX domain K04M1_04320 PF06853 Protein of unknown function (DUF1249) K04M1_04330 PF00149 Calcineurin-like phosphoesterase K04M1_04340 PF05728 Uncharacterised protein family (UPF0227) K04M1_04350 PF00986 DNA gyrase B subunit, carboxyl terminus K04M1_04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_04350 PF01751 Toprim domain K04M1_04350 PF00204 DNA gyrase B K04M1_04360 PF03989 DNA gyrase C-terminal domain, beta-propeller K04M1_04360 PF00521 DNA gyrase/topoisomerase IV, subunit A K04M1_04370 PF13180 PDZ domain K04M1_04380 PF00595 PDZ domain K04M1_04390 PF06295 Protein of unknown function (DUF1043) K04M1_04400 PF03969 AFG1-like ATPase K04M1_04410 PF00572 Ribosomal protein L13 K04M1_04420 PF00380 Ribosomal protein S9/S16 K04M1_04430 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal K04M1_04430 PF00355 Rieske [2Fe-2S] domain K04M1_04440 PF00032 Cytochrome b(C-terminal)/b6/petD K04M1_04440 PF00033 Cytochrome b/b6/petB K04M1_04450 PF02167 Cytochrome C1 family K04M1_04460 PF02798 Glutathione S-transferase, N-terminal domain K04M1_04460 PF00043 Glutathione S-transferase, C-terminal domain K04M1_04470 PF04386 Stringent starvation protein B K04M1_04500 PF04972 BON domain K04M1_04510 PF13580 SIS domain K04M1_04520 PF02021 Uncharacterised protein family UPF0102 K04M1_04530 PF04348 LppC putative lipoprotein K04M1_04540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M1_04550 PF01795 MraW methylase family K04M1_04560 PF04999 Cell division protein FtsL K04M1_04570 PF03717 Penicillin-binding Protein dimerisation domain K04M1_04570 PF00905 Penicillin binding protein transpeptidase domain K04M1_04580 PF01225 Mur ligase family, catalytic domain K04M1_04580 PF08245 Mur ligase middle domain K04M1_04580 PF02875 Mur ligase family, glutamate ligase domain K04M1_04590 PF02875 Mur ligase family, glutamate ligase domain K04M1_04590 PF08245 Mur ligase middle domain K04M1_04590 PF01225 Mur ligase family, catalytic domain K04M1_04600 PF00953 Glycosyl transferase family 4 K04M1_04600 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 K04M1_04610 PF08245 Mur ligase middle domain K04M1_04610 PF02875 Mur ligase family, glutamate ligase domain K04M1_04620 PF01098 Cell cycle protein K04M1_04630 PF03033 Glycosyltransferase family 28 N-terminal domain K04M1_04630 PF04101 Glycosyltransferase family 28 C-terminal domain K04M1_04640 PF02875 Mur ligase family, glutamate ligase domain K04M1_04640 PF08245 Mur ligase middle domain K04M1_04640 PF01225 Mur ligase family, catalytic domain K04M1_04650 PF08478 POTRA domain, FtsQ-type K04M1_04650 PF03799 Cell division protein FtsQ K04M1_04660 PF02491 SHS2 domain inserted in FTSA K04M1_04670 PF12327 FtsZ family, C-terminal domain K04M1_04670 PF00091 Tubulin/FtsZ family, GTPase domain K04M1_04680 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase K04M1_04700 PF01043 SecA preprotein cross-linking domain K04M1_04700 PF07516 SecA Wing and Scaffold domain K04M1_04700 PF02810 SEC-C motif K04M1_04700 PF07517 SecA DEAD-like domain K04M1_04710 PF00293 NUDIX domain K04M1_04720 PF05173 Dihydrodipicolinate reductase, C-terminus K04M1_04720 PF01113 Dihydrodipicolinate reductase, N-terminus K04M1_04730 PF00117 Glutamine amidotransferase class-I K04M1_04730 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain K04M1_04740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K04M1_04740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K04M1_04740 PF02142 MGS-like domain K04M1_04770 PF01925 Sulfite exporter TauE/SafE K04M1_04780 PF03466 LysR substrate binding domain K04M1_04780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_04790 PF03458 UPF0126 domain K04M1_04800 PF01497 Periplasmic binding protein K04M1_04810 PF03186 CobD/Cbib protein K04M1_04810 PF17113 Regulatory signalling modulator protein AmpE K04M1_04820 PF01048 Phosphorylase superfamily K04M1_04840 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K04M1_04840 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_04850 PF01493 GXGXG motif K04M1_04850 PF04898 Glutamate synthase central domain K04M1_04850 PF00310 Glutamine amidotransferases class-II K04M1_04850 PF01645 Conserved region in glutamate synthase K04M1_04860 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K04M1_04860 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_04870 PF01645 Conserved region in glutamate synthase K04M1_04870 PF00310 Glutamine amidotransferases class-II K04M1_04870 PF01493 GXGXG motif K04M1_04870 PF04898 Glutamate synthase central domain K04M1_04880 PF04055 Radical SAM superfamily K04M1_04880 PF16199 Radical_SAM C-terminal domain K04M1_04890 PF01590 GAF domain K04M1_04890 PF00563 EAL domain K04M1_04890 PF00360 Phytochrome region K04M1_04890 PF00990 Diguanylate cyclase, GGDEF domain K04M1_04900 PF00512 His Kinase A (phospho-acceptor) domain K04M1_04900 PF00989 PAS fold K04M1_04900 PF01627 Hpt domain K04M1_04900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_04900 PF18415 Histidine kinase receptor ArcB trans-membrane domain K04M1_04900 PF00072 Response regulator receiver domain K04M1_04920 PF00486 Transcriptional regulatory protein, C terminal K04M1_04920 PF00072 Response regulator receiver domain K04M1_04940 PF03737 Aldolase/RraA K04M1_04960 PF00696 Amino acid kinase family K04M1_04960 PF13840 ACT domain K04M1_04960 PF00742 Homoserine dehydrogenase K04M1_04960 PF03447 Homoserine dehydrogenase, NAD binding domain K04M1_04960 PF01842 ACT domain K04M1_04970 PF00288 GHMP kinases N terminal domain K04M1_04970 PF08544 GHMP kinases C terminal K04M1_04980 PF14821 Threonine synthase N terminus K04M1_04980 PF00291 Pyridoxal-phosphate dependent enzyme K04M1_05000 PF01228 Glycine radical K04M1_05010 PF01261 Xylose isomerase-like TIM barrel K04M1_05020 PF03167 Uracil DNA glycosylase superfamily K04M1_05050 PF01235 Sodium:alanine symporter family K04M1_05060 PF03883 Peroxide stress protein YaaA K04M1_05070 PF00271 Helicase conserved C-terminal domain K04M1_05070 PF00270 DEAD/DEAH box helicase K04M1_05080 PF05175 Methyltransferase small domain K04M1_05090 PF05525 Branched-chain amino acid transport protein K04M1_05100 PF00258 Flavodoxin K04M1_05110 PF02899 Phage integrase, N-terminal SAM-like domain K04M1_05110 PF00589 Phage integrase family K04M1_05120 PF10411 Disulfide bond isomerase protein N-terminus K04M1_05120 PF13098 Thioredoxin-like domain K04M1_05130 PF17768 RecJ OB domain K04M1_05130 PF02272 DHHA1 domain K04M1_05130 PF01368 DHH family K04M1_05140 PF00472 RF-1 domain K04M1_05140 PF03462 PCRF domain K04M1_05150 PF01336 OB-fold nucleic acid binding domain K04M1_05150 PF00152 tRNA synthetases class II (D, K and N) K04M1_05160 PF02954 Bacterial regulatory protein, Fis family K04M1_05160 PF00158 Sigma-54 interaction domain K04M1_05160 PF00072 Response regulator receiver domain K04M1_05190 PF00248 Aldo/keto reductase family K04M1_05210 PF02976 DNA mismatch repair enzyme MutH K04M1_05220 PF00293 NUDIX domain K04M1_05230 PF00391 PEP-utilising enzyme, mobile domain K04M1_05230 PF05524 PEP-utilising enzyme, N-terminal K04M1_05230 PF01590 GAF domain K04M1_05230 PF02896 PEP-utilising enzyme, TIM barrel domain K04M1_05240 PF01925 Sulfite exporter TauE/SafE K04M1_05260 PF00303 Thymidylate synthase K04M1_05280 PF02690 Na+/Pi-cotransporter K04M1_05290 PF03466 LysR substrate binding domain K04M1_05290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_05300 PF01022 Bacterial regulatory protein, arsR family K04M1_05310 PF01649 Ribosomal protein S20 K04M1_05320 PF03023 Lipid II flippase MurJ K04M1_05330 PF01687 Riboflavin kinase K04M1_05330 PF06574 FAD synthetase K04M1_05340 PF00133 tRNA synthetases class I (I, L, M and V) K04M1_05340 PF06827 Zinc finger found in FPG and IleRS K04M1_05340 PF08264 Anticodon-binding domain of tRNA K04M1_05350 PF01252 Signal peptidase (SPase) II K04M1_05360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M1_05370 PF02401 LytB protein K04M1_05390 PF04397 LytTr DNA-binding domain K04M1_05390 PF00072 Response regulator receiver domain K04M1_05400 PF07694 5TMR of 5TMR-LYT K04M1_05400 PF06580 Histidine kinase K04M1_05410 PF02554 Carbon starvation protein CstA K04M1_05440 PF01380 SIS domain K04M1_05450 PF03702 Anhydro-N-acetylmuramic acid kinase K04M1_05460 PF00933 Glycosyl hydrolase family 3 N terminal domain K04M1_05470 PF00793 DAHP synthetase I family K04M1_05480 PF02153 Prephenate dehydrogenase K04M1_05480 PF01817 Chorismate mutase type II K04M1_05490 PF04225 Opacity-associated protein A LysM-like domain K04M1_05490 PF01551 Peptidase family M23 K04M1_05500 PF07238 PilZ domain K04M1_05510 PF00005 ABC transporter K04M1_05510 PF12848 ABC transporter K04M1_05520 PF14718 Soluble lytic murein transglycosylase L domain K04M1_05520 PF01464 Transglycosylase SLT domain K04M1_05530 PF01371 Trp repressor protein K04M1_05540 PF01931 Protein of unknown function DUF84 K04M1_05550 PF00800 Prephenate dehydratase K04M1_05550 PF01817 Chorismate mutase type II K04M1_05560 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K04M1_05570 PF01464 Transglycosylase SLT domain K04M1_05570 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_05580 PF13525 Outer membrane lipoprotein K04M1_05590 PF01479 S4 domain K04M1_05590 PF00849 RNA pseudouridylate synthase K04M1_05610 PF07724 AAA domain (Cdc48 subfamily) K04M1_05610 PF17871 AAA lid domain K04M1_05610 PF02861 Clp amino terminal domain, pathogenicity island component K04M1_05610 PF10431 C-terminal, D2-small domain, of ClpB protein K04M1_05610 PF00004 ATPase family associated with various cellular activities (AAA) K04M1_05720 PF03411 Penicillin-insensitive murein endopeptidase K04M1_05740 PF12838 4Fe-4S dicluster domain K04M1_05760 PF04381 Putative exonuclease, RdgC K04M1_05770 PF00486 Transcriptional regulatory protein, C terminal K04M1_05770 PF00072 Response regulator receiver domain K04M1_05780 PF00989 PAS fold K04M1_05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_05780 PF00512 His Kinase A (phospho-acceptor) domain K04M1_05780 PF11808 Phosphate regulon sensor protein PhoR K04M1_05790 PF12849 PBP superfamily domain K04M1_05800 PF02541 Ppx/GppA phosphatase family K04M1_05810 PF02503 Polyphosphate kinase middle domain K04M1_05810 PF13089 Polyphosphate kinase N-terminal domain K04M1_05810 PF17941 Polyphosphate kinase C-terminal domain 1 K04M1_05810 PF13090 Polyphosphate kinase C-terminal domain 2 K04M1_05820 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_05830 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_05840 PF00005 ABC transporter K04M1_05850 PF01895 PhoU domain K04M1_05860 PF03976 Polyphosphate kinase 2 (PPK2) K04M1_05870 PF03932 CutC family K04M1_05880 PF10417 C-terminal domain of 1-Cys peroxiredoxin K04M1_05880 PF00578 AhpC/TSA family K04M1_05890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_05890 PF03466 LysR substrate binding domain K04M1_05900 PF01274 Malate synthase K04M1_05910 PF00463 Isocitrate lyase family K04M1_05920 PF00571 CBS domain K04M1_05940 PF02547 Queuosine biosynthesis protein K04M1_05950 PF01702 Queuine tRNA-ribosyltransferase K04M1_05960 PF02699 Preprotein translocase subunit K04M1_05970 PF07549 SecD/SecF GG Motif K04M1_05970 PF02355 Protein export membrane protein K04M1_05970 PF13721 SecD export protein N-terminal TM region K04M1_05980 PF02355 Protein export membrane protein K04M1_05980 PF07549 SecD/SecF GG Motif K04M1_06010 PF00459 Inositol monophosphatase family K04M1_06020 PF00588 SpoU rRNA Methylase family K04M1_06030 PF02082 Transcriptional regulator K04M1_06040 PF00266 Aminotransferase class-V K04M1_06050 PF01592 NifU-like N terminal domain K04M1_06060 PF01521 Iron-sulphur cluster biosynthesis K04M1_06070 PF00226 DnaJ domain K04M1_06070 PF07743 HSCB C-terminal oligomerisation domain K04M1_06080 PF00012 Hsp70 protein K04M1_06090 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M1_06100 PF04384 Iron-sulphur cluster assembly K04M1_06110 PF12404 Peptidase K04M1_06110 PF00883 Cytosol aminopeptidase family, catalytic domain K04M1_06120 PF00334 Nucleoside diphosphate kinase K04M1_06130 PF04055 Radical SAM superfamily K04M1_06140 PF13464 Domain of unknown function (DUF4115) K04M1_06150 PF04551 GcpE protein K04M1_06160 PF13393 Histidyl-tRNA synthetase K04M1_06160 PF03129 Anticodon binding domain K04M1_06170 PF09976 Tetratricopeptide repeat-like domain K04M1_06180 PF13360 PQQ-like domain K04M1_06190 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K04M1_06190 PF01926 50S ribosome-binding GTPase K04M1_06220 PF13742 OB-fold nucleic acid binding domain K04M1_06220 PF02601 Exonuclease VII, large subunit K04M1_06230 PF00478 IMP dehydrogenase / GMP reductase domain K04M1_06230 PF00571 CBS domain K04M1_06240 PF00958 GMP synthase C terminal domain K04M1_06240 PF00117 Glutamine amidotransferase class-I K04M1_06240 PF02540 NAD synthase K04M1_06250 PF13356 Arm DNA-binding domain K04M1_06250 PF00589 Phage integrase family K04M1_06390 PF03553 Na+/H+ antiporter family K04M1_06400 PF00704 Glycosyl hydrolases family 18 K04M1_06400 PF06483 Chitinase C K04M1_06410 PF01184 GPR1/FUN34/yaaH family K04M1_06420 PF01235 Sodium:alanine symporter family K04M1_06430 PF01266 FAD dependent oxidoreductase K04M1_06450 PF01053 Cys/Met metabolism PLP-dependent enzyme K04M1_06460 PF00202 Aminotransferase class-III K04M1_06500 PF00583 Acetyltransferase (GNAT) family K04M1_06500 PF00795 Carbon-nitrogen hydrolase K04M1_06510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_06510 PF03466 LysR substrate binding domain K04M1_06550 PF01668 SmpB protein K04M1_06560 PF03364 Polyketide cyclase / dehydrase and lipid transport K04M1_06570 PF03658 RnfH family Ubiquitin K04M1_06580 PF04355 SmpA / OmlA family K04M1_06600 PF02463 RecF/RecN/SMC N terminal domain K04M1_06620 PF01513 ATP-NAD kinase K04M1_06630 PF01025 GrpE K04M1_06650 PF00375 Sodium:dicarboxylate symporter family K04M1_06660 PF00012 Hsp70 protein K04M1_06670 PF00226 DnaJ domain K04M1_06670 PF00684 DnaJ central domain K04M1_06670 PF01556 DnaJ C terminal domain K04M1_06680 PF00114 Pilin (bacterial filament) K04M1_06680 PF07963 Prokaryotic N-terminal methylation motif K04M1_06730 PF03806 AbgT putative transporter family K04M1_06740 PF14437 MafB19-like deaminase K04M1_06750 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_06750 PF01464 Transglycosylase SLT domain K04M1_06760 PF02769 AIR synthase related protein, C-terminal domain K04M1_06760 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain K04M1_06760 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal K04M1_06790 PF00593 TonB dependent receptor K04M1_06790 PF07715 TonB-dependent Receptor Plug Domain K04M1_06820 PF01546 Peptidase family M20/M25/M40 K04M1_06820 PF07687 Peptidase dimerisation domain K04M1_06830 PF00860 Permease family K04M1_06840 PF00156 Phosphoribosyl transferase domain K04M1_06860 PF07417 Sigma factor-binding transcriptional regulator Crl K04M1_06870 PF00696 Amino acid kinase family K04M1_06870 PF01472 PUA domain K04M1_06880 PF00171 Aldehyde dehydrogenase family K04M1_06890 PF03477 ATP cone domain K04M1_06900 PF01872 RibD C-terminal domain K04M1_06900 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K04M1_06910 PF00677 Lumazine binding domain K04M1_06920 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K04M1_06920 PF00925 GTP cyclohydrolase II K04M1_06930 PF00885 6,7-dimethyl-8-ribityllumazine synthase K04M1_06940 PF01029 NusB family K04M1_06950 PF00586 AIR synthase related protein, N-terminal domain K04M1_06950 PF02769 AIR synthase related protein, C-terminal domain K04M1_06960 PF04608 Phosphatidylglycerophosphatase A K04M1_06970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase K04M1_06970 PF02780 Transketolase, C-terminal domain K04M1_06970 PF02779 Transketolase, pyrimidine binding domain K04M1_06980 PF00348 Polyprenyl synthetase K04M1_06990 PF02609 Exonuclease VII small subunit K04M1_07000 PF01618 MotA/TolQ/ExbB proton channel family K04M1_07010 PF00691 OmpA family K04M1_07010 PF13677 Membrane MotB of proton-channel complex MotA/MotB K04M1_07020 PF02568 Thiamine biosynthesis protein (ThiI) K04M1_07020 PF02926 THUMP domain K04M1_07030 PF03466 LysR substrate binding domain K04M1_07030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_07050 PF04241 Protein of unknown function (DUF423) K04M1_07060 PF18125 RlmM ferredoxin-like domain K04M1_07060 PF01728 FtsJ-like methyltransferase K04M1_07070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K04M1_07070 PF01367 5'-3' exonuclease, C-terminal SAM fold K04M1_07080 PF03641 Possible lysine decarboxylase K04M1_07080 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases K04M1_07080 PF11892 Domain of unknown function (DUF3412) K04M1_07090 PF00990 Diguanylate cyclase, GGDEF domain K04M1_07090 PF00072 Response regulator receiver domain K04M1_07110 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term K04M1_07110 PF14489 QueF-like protein K04M1_07120 PF07348 Syd protein (SUKH-2) K04M1_07130 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) K04M1_07140 PF03180 NLPA lipoprotein K04M1_07150 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_07160 PF09383 NIL domain K04M1_07160 PF00005 ABC transporter K04M1_07180 PF00356 Bacterial regulatory proteins, lacI family K04M1_07190 PF00367 phosphotransferase system, EIIB K04M1_07190 PF02378 Phosphotransferase system, EIIC K04M1_07200 PF00128 Alpha amylase, catalytic domain K04M1_07200 PF16657 Maltogenic Amylase, C-terminal domain K04M1_07230 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) K04M1_07230 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 K04M1_07240 PF00464 Serine hydroxymethyltransferase K04M1_07250 PF04055 Radical SAM superfamily K04M1_07250 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family K04M1_07260 PF03099 Biotin/lipoate A/B protein ligase family K04M1_07270 PF04359 Protein of unknown function (DUF493) K04M1_07280 PF00768 D-alanyl-D-alanine carboxypeptidase K04M1_07280 PF07943 Penicillin-binding protein 5, C-terminal domain K04M1_07290 PF05036 Sporulation related domain K04M1_07290 PF03330 Lytic transglycolase K04M1_07300 PF01098 Cell cycle protein K04M1_07310 PF03717 Penicillin-binding Protein dimerisation domain K04M1_07310 PF00905 Penicillin binding protein transpeptidase domain K04M1_07320 PF02590 Predicted SPOUT methyltransferase K04M1_07340 PF14840 Processivity clamp loader gamma complex DNA pol III C-term K04M1_07340 PF06144 DNA polymerase III, delta subunit K04M1_07350 PF04390 Lipopolysaccharide-assembly K04M1_07360 PF08264 Anticodon-binding domain of tRNA K04M1_07360 PF00133 tRNA synthetases class I (I, L, M and V) K04M1_07360 PF13603 Leucyl-tRNA synthetase, Domain 2 K04M1_07370 PF07295 Zinc-ribbon containing domain K04M1_07380 PF00795 Carbon-nitrogen hydrolase K04M1_07390 PF00571 CBS domain K04M1_07390 PF03471 Transporter associated domain K04M1_07400 PF02130 Uncharacterized protein family UPF0054 K04M1_07410 PF02562 PhoH-like protein K04M1_07420 PF00919 Uncharacterized protein family UPF0004 K04M1_07420 PF01938 TRAM domain K04M1_07420 PF04055 Radical SAM superfamily K04M1_07430 PF01494 FAD binding domain K04M1_07640 PF01926 50S ribosome-binding GTPase K04M1_07640 PF06071 Protein of unknown function (DUF933) K04M1_07650 PF01195 Peptidyl-tRNA hydrolase K04M1_07660 PF14572 Phosphoribosyl synthetase-associated domain K04M1_07660 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase K04M1_07670 PF08544 GHMP kinases C terminal K04M1_07670 PF00288 GHMP kinases N terminal domain K04M1_07680 PF03550 Outer membrane lipoprotein LolB K04M1_07690 PF01488 Shikimate / quinate 5-dehydrogenase K04M1_07690 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain K04M1_07690 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain K04M1_07700 PF00472 RF-1 domain K04M1_07700 PF03462 PCRF domain K04M1_07710 PF17827 PrmC N-terminal domain K04M1_07710 PF13847 Methyltransferase domain K04M1_07720 PF04247 Invasion gene expression up-regulator, SirB K04M1_07730 PF13369 Transglutaminase-like superfamily K04M1_07740 PF00793 DAHP synthetase I family K04M1_07750 PF02872 5'-nucleotidase, C-terminal domain K04M1_07750 PF00149 Calcineurin-like phosphoesterase K04M1_07760 PF04073 Aminoacyl-tRNA editing domain K04M1_07770 PF00849 RNA pseudouridylate synthase K04M1_07770 PF01479 S4 domain K04M1_07780 PF01713 Smr domain K04M1_07830 PF03173 Putative carbohydrate binding domain K04M1_07830 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain K04M1_07830 PF00728 Glycosyl hydrolase family 20, catalytic domain K04M1_07830 PF02838 Glycosyl hydrolase family 20, domain 2 K04M1_07860 PF00403 Heavy-metal-associated domain K04M1_07870 PF13609 Gram-negative porin K04M1_07880 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K04M1_07890 PF00749 tRNA synthetases class I (E and Q), catalytic domain K04M1_07900 PF00691 OmpA family K04M1_07900 PF01389 OmpA-like transmembrane domain K04M1_07990 PF00072 Response regulator receiver domain K04M1_07990 PF01584 CheW-like domain K04M1_08000 PF03705 CheR methyltransferase, all-alpha domain K04M1_08000 PF01739 CheR methyltransferase, SAM binding domain K04M1_08010 PF00460 Flagella basal body rod protein K04M1_08020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_08020 PF00460 Flagella basal body rod protein K04M1_08030 PF03963 Flagellar hook capping protein - N-terminal region K04M1_08030 PF13861 FlgD Tudor-like domain K04M1_08030 PF13860 FlgD Ig-like domain K04M1_08040 PF07559 Flagellar basal body protein FlaE K04M1_08040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_08040 PF00460 Flagella basal body rod protein K04M1_08050 PF00460 Flagella basal body rod protein K04M1_08050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_08060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_08060 PF00460 Flagella basal body rod protein K04M1_08070 PF02107 Flagellar L-ring protein K04M1_08080 PF02119 Flagellar P-ring protein K04M1_08090 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K04M1_08090 PF10135 Rod binding protein K04M1_08100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_08100 PF07196 Flagellin hook IN motif K04M1_08110 PF00669 Bacterial flagellin N-terminal helical region K04M1_08120 PF07196 Flagellin hook IN motif K04M1_08120 PF00700 Bacterial flagellin C-terminal helical region K04M1_08120 PF00669 Bacterial flagellin N-terminal helical region K04M1_08130 PF00669 Bacterial flagellin N-terminal helical region K04M1_08130 PF07196 Flagellin hook IN motif K04M1_08130 PF00700 Bacterial flagellin C-terminal helical region K04M1_08140 PF07196 Flagellin hook IN motif K04M1_08140 PF00700 Bacterial flagellin C-terminal helical region K04M1_08140 PF00669 Bacterial flagellin N-terminal helical region K04M1_08150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K04M1_08160 PF05524 PEP-utilising enzyme, N-terminal K04M1_08160 PF00391 PEP-utilising enzyme, mobile domain K04M1_08160 PF02896 PEP-utilising enzyme, TIM barrel domain K04M1_08180 PF00381 PTS HPr component phosphorylation site K04M1_08190 PF00291 Pyridoxal-phosphate dependent enzyme K04M1_08210 PF04354 ZipA, C-terminal FtsZ-binding domain K04M1_08220 PF12826 Helix-hairpin-helix motif K04M1_08220 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K04M1_08220 PF01653 NAD-dependent DNA ligase adenylation domain K04M1_08220 PF00533 BRCA1 C Terminus (BRCT) domain K04M1_08220 PF03120 NAD-dependent DNA ligase OB-fold domain K04M1_08230 PF03573 outer membrane porin, OprD family K04M1_08270 PF01145 SPFH domain / Band 7 family K04M1_08270 PF16200 C-terminal region of band_7 K04M1_08280 PF11658 Cellulose biosynthesis protein BcsG K04M1_08300 PF10995 Cellulose biosynthesis GIL K04M1_08320 PF06564 Cellulose biosynthesis protein BcsQ K04M1_08330 PF07238 PilZ domain K04M1_08330 PF00535 Glycosyl transferase family 2 K04M1_08330 PF03552 Cellulose synthase K04M1_08340 PF03170 Bacterial cellulose synthase subunit K04M1_08350 PF01270 Glycosyl hydrolases family 8 K04M1_08360 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) K04M1_08370 PF00085 Thioredoxin K04M1_08380 PF00106 short chain dehydrogenase K04M1_08390 PF08338 Domain of unknown function (DUF1731) K04M1_08390 PF01370 NAD dependent epimerase/dehydratase family K04M1_08400 PF07556 Protein of unknown function (DUF1538) K04M1_08410 PF07556 Protein of unknown function (DUF1538) K04M1_08450 PF12850 Calcineurin-like phosphoesterase superfamily domain K04M1_08480 PF17323 Trans-membrane regulatory protein ToxS K04M1_08490 PF00486 Transcriptional regulatory protein, C terminal K04M1_08500 PF00183 Hsp90 protein K04M1_08500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_08510 PF05191 Adenylate kinase, active site lid K04M1_08520 PF00762 Ferrochelatase K04M1_08530 PF00854 POT family K04M1_08540 PF02357 Transcription termination factor nusG K04M1_08550 PF13537 Glutamine amidotransferase domain K04M1_08550 PF00733 Asparagine synthase K04M1_08560 PF00999 Sodium/hydrogen exchanger family K04M1_08560 PF02254 TrkA-N domain K04M1_08570 PF00480 ROK family K04M1_08570 PF01047 MarR family K04M1_08580 PF01979 Amidohydrolase family K04M1_08590 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K04M1_08590 PF00367 phosphotransferase system, EIIB K04M1_08590 PF02378 Phosphotransferase system, EIIC K04M1_08600 PF00749 tRNA synthetases class I (E and Q), catalytic domain K04M1_08600 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain K04M1_08610 PF01475 Ferric uptake regulator family K04M1_08630 PF00258 Flavodoxin K04M1_08650 PF12697 Alpha/beta hydrolase family K04M1_08660 PF03925 SeqA protein C-terminal domain K04M1_08660 PF17206 SeqA protein N-terminal domain K04M1_08670 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K04M1_08670 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K04M1_08670 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K04M1_08670 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K04M1_08690 PF01784 NIF3 (NGG1p interacting factor 3) K04M1_08700 PF00285 Citrate synthase, C-terminal domain K04M1_08710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K04M1_08720 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K04M1_08730 PF00890 FAD binding domain K04M1_08730 PF02910 Fumarate reductase flavoprotein C-term K04M1_08740 PF13085 2Fe-2S iron-sulfur cluster binding domain K04M1_08750 PF02779 Transketolase, pyrimidine binding domain K04M1_08750 PF16078 2-oxoglutarate dehydrogenase N-terminus K04M1_08750 PF16870 2-oxoglutarate dehydrogenase C-terminal K04M1_08750 PF00676 Dehydrogenase E1 component K04M1_08760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K04M1_08760 PF00364 Biotin-requiring enzyme K04M1_08760 PF02817 e3 binding domain K04M1_08770 PF08442 ATP-grasp domain K04M1_08770 PF00549 CoA-ligase K04M1_08780 PF00549 CoA-ligase K04M1_08780 PF02629 CoA binding domain K04M1_08790 PF00950 ABC 3 transport family K04M1_08800 PF00005 ABC transporter K04M1_08810 PF01297 Zinc-uptake complex component A periplasmic K04M1_08820 PF02311 AraC-like ligand binding domain K04M1_08820 PF12833 Helix-turn-helix domain K04M1_08830 PF04023 FeoA domain K04M1_08840 PF17910 FeoB cytosolic helical domain K04M1_08840 PF02421 Ferrous iron transport protein B K04M1_08840 PF07670 Nucleoside recognition K04M1_08840 PF07664 Ferrous iron transport protein B C terminus K04M1_08880 PF05746 DALR anticodon binding domain K04M1_08880 PF03485 Arginyl tRNA synthetase N terminal domain K04M1_08880 PF00750 tRNA synthetases class I (R) K04M1_08890 PF06185 YecM protein K04M1_08910 PF00089 Trypsin K04M1_08920 PF01842 ACT domain K04M1_08920 PF00551 Formyl transferase K04M1_08930 PF13307 Helicase C-terminal domain K04M1_08930 PF04851 Type III restriction enzyme, res subunit K04M1_08940 PF00814 Glycoprotease family K04M1_08960 PF03843 Outer membrane lipoprotein Slp family K04M1_08970 PF00561 alpha/beta hydrolase fold K04M1_08980 PF13193 AMP-binding enzyme C-terminal domain K04M1_08980 PF00501 AMP-binding enzyme K04M1_08990 PF00570 HRDC domain K04M1_08990 PF01612 3'-5' exonuclease K04M1_09000 PF03776 Septum formation topological specificity factor MinE K04M1_09010 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K04M1_09020 PF03775 Septum formation inhibitor MinC, C-terminal domain K04M1_09020 PF05209 Septum formation inhibitor MinC, N-terminal domain K04M1_09030 PF05166 YcgL domain K04M1_09040 PF13406 Transglycosylase SLT domain K04M1_09050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_09050 PF03466 LysR substrate binding domain K04M1_09060 PF01773 Na+ dependent nucleoside transporter N-terminus K04M1_09060 PF07662 Na+ dependent nucleoside transporter C-terminus K04M1_09060 PF07670 Nucleoside recognition K04M1_09070 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain K04M1_09070 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain K04M1_09090 PF01209 ubiE/COQ5 methyltransferase family K04M1_09100 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M1_09100 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M1_09120 PF07977 FabA-like domain K04M1_09130 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M1_09130 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M1_09180 PF00221 Aromatic amino acid lyase K04M1_09190 PF00535 Glycosyl transferase family 2 K04M1_09200 PF07977 FabA-like domain K04M1_09230 PF00550 Phosphopantetheine attachment site K04M1_09240 PF00550 Phosphopantetheine attachment site K04M1_09290 PF04820 Tryptophan halogenase K04M1_09310 PF00271 Helicase conserved C-terminal domain K04M1_09310 PF00270 DEAD/DEAH box helicase K04M1_09320 PF02254 TrkA-N domain K04M1_09320 PF02080 TrkA-C domain K04M1_09330 PF02386 Cation transport protein K04M1_09370 PF02696 Uncharacterized ACR, YdiU/UPF0061 family K04M1_09380 PF03480 Bacterial extracellular solute-binding protein, family 7 K04M1_09390 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K04M1_09400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K04M1_09420 PF00072 Response regulator receiver domain K04M1_09420 PF02954 Bacterial regulatory protein, Fis family K04M1_09420 PF00158 Sigma-54 interaction domain K04M1_09430 PF00512 His Kinase A (phospho-acceptor) domain K04M1_09430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_09430 PF02743 Cache domain K04M1_09440 PF05697 Bacterial trigger factor protein (TF) K04M1_09440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M1_09440 PF05698 Bacterial trigger factor protein (TF) C-terminus K04M1_09450 PF00574 Clp protease K04M1_09460 PF06689 ClpX C4-type zinc finger K04M1_09460 PF10431 C-terminal, D2-small domain, of ClpB protein K04M1_09460 PF07724 AAA domain (Cdc48 subfamily) K04M1_09470 PF00004 ATPase family associated with various cellular activities (AAA) K04M1_09470 PF05362 Lon protease (S16) C-terminal proteolytic domain K04M1_09470 PF02190 ATP-dependent protease La (LON) substrate-binding domain K04M1_09480 PF00216 Bacterial DNA-binding protein K04M1_09490 PF13145 PPIC-type PPIASE domain K04M1_09530 PF01966 HD domain K04M1_09530 PF13286 Phosphohydrolase-associated domain K04M1_09550 PF00155 Aminotransferase class I and II K04M1_09560 PF00425 chorismate binding enzyme K04M1_09570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K04M1_09570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K04M1_09570 PF16582 Middle domain of thiamine pyrophosphate K04M1_09580 PF12697 Alpha/beta hydrolase family K04M1_09590 PF00378 Enoyl-CoA hydratase/isomerase K04M1_09600 PF13378 Enolase C-terminal domain-like K04M1_09610 PF00501 AMP-binding enzyme K04M1_09610 PF13193 AMP-binding enzyme C-terminal domain K04M1_09630 PF03601 Conserved hypothetical protein 698 K04M1_09640 PF07690 Major Facilitator Superfamily K04M1_09730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_09730 PF00529 HlyD membrane-fusion protein of T1SS K04M1_09740 PF00873 AcrB/AcrD/AcrF family K04M1_09770 PF00291 Pyridoxal-phosphate dependent enzyme K04M1_09780 PF01037 Lrp/AsnC ligand binding domain K04M1_09780 PF13404 AsnC-type helix-turn-helix domain K04M1_09810 PF09619 Type III secretion system lipoprotein chaperone (YscW) K04M1_09820 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K04M1_09840 PF08448 PAS fold K04M1_09840 PF00990 Diguanylate cyclase, GGDEF domain K04M1_09850 PF00588 SpoU rRNA Methylase family K04M1_09850 PF08032 RNA 2'-O ribose methyltransferase substrate binding K04M1_09860 PF00571 CBS domain K04M1_09860 PF00478 IMP dehydrogenase / GMP reductase domain K04M1_09870 PF00403 Heavy-metal-associated domain K04M1_09880 PF01048 Phosphorylase superfamily K04M1_09900 PF00672 HAMP domain K04M1_09900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_09910 PF01230 HIT domain K04M1_09940 PF08139 Prokaryotic membrane lipoprotein lipid attachment site K04M1_09940 PF13036 Peptidoglycan-synthase activator LpoB K04M1_09960 PF05728 Uncharacterised protein family (UPF0227) K04M1_09970 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_10000 PF03461 TRCF domain K04M1_10000 PF00271 Helicase conserved C-terminal domain K04M1_10000 PF02559 CarD-like/TRCF domain K04M1_10000 PF00270 DEAD/DEAH box helicase K04M1_10000 PF17757 UvrB interaction domain K04M1_10020 PF02687 FtsX-like permease family K04M1_10020 PF12704 MacB-like periplasmic core domain K04M1_10030 PF00005 ABC transporter K04M1_10040 PF12704 MacB-like periplasmic core domain K04M1_10040 PF02687 FtsX-like permease family K04M1_10060 PF13567 Domain of unknown function (DUF4131) K04M1_10060 PF00753 Metallo-beta-lactamase superfamily K04M1_10060 PF03772 Competence protein K04M1_10070 PF00664 ABC transporter transmembrane region K04M1_10070 PF00005 ABC transporter K04M1_10080 PF02606 Tetraacyldisaccharide-1-P 4'-kinase K04M1_10090 PF03966 Trm112p-like protein K04M1_10100 PF02348 Cytidylyltransferase K04M1_10110 PF04293 SpoVR like protein K04M1_10120 PF04285 Protein of unknown function (DUF444) K04M1_10130 PF08298 PrkA AAA domain K04M1_10130 PF06798 PrkA serine protein kinase C-terminal domain K04M1_10140 PF03887 YfbU domain K04M1_10160 PF04055 Radical SAM superfamily K04M1_10180 PF01228 Glycine radical K04M1_10180 PF02901 Pyruvate formate lyase-like K04M1_10210 PF00005 ABC transporter K04M1_10220 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_10230 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_10240 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_10260 PF03372 Endonuclease/Exonuclease/phosphatase family K04M1_10270 PF10689 Protein of unknown function (DUF2496) K04M1_10280 PF07445 Primosomal replication protein priC K04M1_10290 PF01925 Sulfite exporter TauE/SafE K04M1_10300 PF13307 Helicase C-terminal domain K04M1_10300 PF06733 DEAD_2 K04M1_10330 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K04M1_10340 PF00849 RNA pseudouridylate synthase K04M1_10350 PF03971 Monomeric isocitrate dehydrogenase K04M1_10360 PF00313 'Cold-shock' DNA-binding domain K04M1_10370 PF02617 ATP-dependent Clp protease adaptor protein ClpS K04M1_10380 PF00004 ATPase family associated with various cellular activities (AAA) K04M1_10380 PF07724 AAA domain (Cdc48 subfamily) K04M1_10380 PF17871 AAA lid domain K04M1_10380 PF02861 Clp amino terminal domain, pathogenicity island component K04M1_10380 PF10431 C-terminal, D2-small domain, of ClpB protein K04M1_10390 PF01176 Translation initiation factor 1A / IF-1 K04M1_10400 PF04377 Arginine-tRNA-protein transferase, C terminus K04M1_10400 PF04376 Arginine-tRNA-protein transferase, N terminus K04M1_10410 PF03588 Leucyl/phenylalanyl-tRNA protein transferase K04M1_10430 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K04M1_10440 PF10692 Protein of unknown function (DUF2498) K04M1_10450 PF01396 Topoisomerase DNA binding C4 zinc finger K04M1_10450 PF08272 Topoisomerase I zinc-ribbon-like K04M1_10450 PF01751 Toprim domain K04M1_10450 PF01131 DNA topoisomerase K04M1_10460 PF00483 Nucleotidyl transferase K04M1_10470 PF00534 Glycosyl transferases group 1 K04M1_10470 PF08323 Starch synthase catalytic domain K04M1_10510 PF04994 TfoX C-terminal domain K04M1_10510 PF04993 TfoX N-terminal domain K04M1_10520 PF00356 Bacterial regulatory proteins, lacI family K04M1_10530 PF02613 Nitrate reductase delta subunit K04M1_10540 PF00072 Response regulator receiver domain K04M1_10540 PF00486 Transcriptional regulatory protein, C terminal K04M1_10550 PF02698 DUF218 domain K04M1_10570 PF17192 MukF middle domain K04M1_10570 PF03882 MukF winged-helix domain K04M1_10570 PF17193 MukF C-terminal domain K04M1_10580 PF04288 MukE-like family K04M1_10590 PF04310 MukB N-terminal K04M1_10590 PF16330 MukB hinge domain K04M1_10630 PF08443 RimK-like ATP-grasp domain K04M1_10630 PF18030 RimK PreATP-grasp domain K04M1_10640 PF08003 Protein of unknown function (DUF1698) K04M1_10650 PF13649 Methyltransferase domain K04M1_10660 PF01904 Protein of unknown function DUF72 K04M1_10670 PF01336 OB-fold nucleic acid binding domain K04M1_10670 PF00152 tRNA synthetases class II (D, K and N) K04M1_10670 PF02938 GAD domain K04M1_10680 PF01709 Transcriptional regulator K04M1_10690 PF02075 Crossover junction endodeoxyribonuclease RuvC K04M1_10700 PF01330 RuvA N terminal domain K04M1_10700 PF07499 RuvA, C-terminal domain K04M1_10710 PF05496 Holliday junction DNA helicase RuvB P-loop domain K04M1_10710 PF05491 RuvB C-terminal winged helix domain K04M1_10710 PF17864 RuvB AAA lid domain K04M1_10720 PF01654 Cytochrome bd terminal oxidase subunit I K04M1_10730 PF02322 Cytochrome bd terminal oxidase subunit II K04M1_10740 PF08173 Membrane bound YbgT-like protein K04M1_10760 PF03061 Thioesterase superfamily K04M1_10770 PF01618 MotA/TolQ/ExbB proton channel family K04M1_10780 PF02472 Biopolymer transport protein ExbD/TolR K04M1_10800 PF07676 WD40-like Beta Propeller Repeat K04M1_10800 PF04052 TolB amino-terminal domain K04M1_10810 PF00691 OmpA family K04M1_10820 PF16331 TolA binding protein trimerisation K04M1_10820 PF13174 Tetratricopeptide repeat K04M1_10830 PF02445 Quinolinate synthetase A protein K04M1_10850 PF03994 Domain of Unknown Function (DUF350) K04M1_10870 PF03738 Glutathionylspermidine synthase preATP-grasp K04M1_10890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_10890 PF09308 LuxQ, periplasmic K04M1_10890 PF00512 His Kinase A (phospho-acceptor) domain K04M1_10890 PF00072 Response regulator receiver domain K04M1_10900 PF06610 L-alanine exporter K04M1_10930 PF02322 Cytochrome bd terminal oxidase subunit II K04M1_10940 PF01654 Cytochrome bd terminal oxidase subunit I K04M1_10990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_10990 PF00529 HlyD membrane-fusion protein of T1SS K04M1_11000 PF00873 AcrB/AcrD/AcrF family K04M1_11030 PF00579 tRNA synthetases class I (W and Y) K04M1_11050 PF03372 Endonuclease/Exonuclease/phosphatase family K04M1_11070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_11070 PF00672 HAMP domain K04M1_11080 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) K04M1_11100 PF03466 LysR substrate binding domain K04M1_11100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_11120 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K04M1_11120 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K04M1_11130 PF01037 Lrp/AsnC ligand binding domain K04M1_11140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE K04M1_11140 PF01580 FtsK/SpoIIIE family K04M1_11140 PF09397 Ftsk gamma domain K04M1_11140 PF17854 FtsK alpha domain K04M1_11150 PF03548 Outer membrane lipoprotein carrier protein LolA K04M1_11160 PF12002 MgsA AAA+ ATPase C terminal K04M1_11160 PF00004 ATPase family associated with various cellular activities (AAA) K04M1_11160 PF16193 AAA C-terminal domain K04M1_11170 PF02403 Seryl-tRNA synthetase N-terminal domain K04M1_11170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K04M1_11200 PF01258 Prokaryotic dksA/traR C4-type zinc finger K04M1_11210 PF00202 Aminotransferase class-III K04M1_11220 PF04055 Radical SAM superfamily K04M1_11220 PF06968 Biotin and Thiamin Synthesis associated domain K04M1_11230 PF00155 Aminotransferase class I and II K04M1_11240 PF08241 Methyltransferase domain K04M1_11270 PF01435 Peptidase family M48 K04M1_11290 PF00106 short chain dehydrogenase K04M1_11340 PF16036 Chalcone isomerase-like K04M1_11360 PF00206 Lyase K04M1_11360 PF08328 Adenylosuccinate lyase C-terminal K04M1_11370 PF04356 Protein of unknown function (DUF489) K04M1_11400 PF00294 pfkB family carbohydrate kinase K04M1_11410 PF00816 H-NS histone family K04M1_11420 PF03553 Na+/H+ antiporter family K04M1_11430 PF01634 ATP phosphoribosyltransferase K04M1_11430 PF08029 HisG, C-terminal domain K04M1_11440 PF00815 Histidinol dehydrogenase K04M1_11450 PF00155 Aminotransferase class I and II K04M1_11460 PF08645 Polynucleotide kinase 3 phosphatase K04M1_11460 PF00475 Imidazoleglycerol-phosphate dehydratase K04M1_11470 PF00117 Glutamine amidotransferase class-I K04M1_11480 PF00977 Histidine biosynthesis protein K04M1_11490 PF00977 Histidine biosynthesis protein K04M1_11500 PF01502 Phosphoribosyl-AMP cyclohydrolase K04M1_11500 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase K04M1_11510 PF02810 SEC-C motif K04M1_11520 PF08668 HDOD domain K04M1_11520 PF00563 EAL domain K04M1_11530 PF00149 Calcineurin-like phosphoesterase K04M1_11540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K04M1_11550 PF01406 tRNA synthetases class I (C) catalytic domain K04M1_11550 PF09190 DALR domain K04M1_11560 PF00265 Thymidine kinase K04M1_11620 PF01226 Formate/nitrite transporter K04M1_11640 PF03649 Uncharacterised protein family (UPF0014) K04M1_11650 PF06796 Periplasmic nitrate reductase protein NapE K04M1_11660 PF03264 NapC/NirT cytochrome c family, N-terminal region K04M1_11670 PF00384 Molybdopterin oxidoreductase K04M1_11670 PF01568 Molydopterin dinucleotide binding domain K04M1_11670 PF18364 Molybdopterin oxidoreductase N-terminal domain K04M1_11680 PF16875 Glycosyl hydrolase family 36 N-terminal domain K04M1_11680 PF16874 Glycosyl hydrolase family 36 C-terminal domain K04M1_11700 PF02833 DHHA2 domain K04M1_11700 PF01368 DHH family K04M1_11720 PF00005 ABC transporter K04M1_11730 PF00005 ABC transporter K04M1_11730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_11740 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_11740 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M1_11750 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_11760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_11770 PF02954 Bacterial regulatory protein, Fis family K04M1_11770 PF00158 Sigma-54 interaction domain K04M1_11780 PF04012 PspA/IM30 family K04M1_11790 PF06667 Phage shock protein B K04M1_11800 PF04024 PspC domain K04M1_11820 PF13533 Biotin-lipoyl like K04M1_11830 PF00873 AcrB/AcrD/AcrF family K04M1_11840 PF03352 Methyladenine glycosylase K04M1_11850 PF03280 Proteobacterial lipase chaperone protein K04M1_11860 PF00561 alpha/beta hydrolase fold K04M1_11870 PF01053 Cys/Met metabolism PLP-dependent enzyme K04M1_11880 PF13396 Phospholipase_D-nuclease N-terminal K04M1_11880 PF13091 PLD-like domain K04M1_11890 PF00209 Sodium:neurotransmitter symporter family K04M1_11900 PF00849 RNA pseudouridylate synthase K04M1_11920 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M1_11920 PF00175 Oxidoreductase NAD-binding domain K04M1_11920 PF00970 Oxidoreductase FAD-binding domain K04M1_11930 PF03063 Prismane/CO dehydrogenase family K04M1_11940 PF00158 Sigma-54 interaction domain K04M1_11940 PF01590 GAF domain K04M1_11960 PF01066 CDP-alcohol phosphatidyltransferase K04M1_11970 PF00005 ABC transporter K04M1_11980 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_11990 PF13416 Bacterial extracellular solute-binding protein K04M1_12010 PF06945 Protein of unknown function (DUF1289) K04M1_12030 PF00149 Calcineurin-like phosphoesterase K04M1_12030 PF02872 5'-nucleotidase, C-terminal domain K04M1_12050 PF01386 Ribosomal L25p family K04M1_12060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_12060 PF00512 His Kinase A (phospho-acceptor) domain K04M1_12060 PF00672 HAMP domain K04M1_12070 PF00072 Response regulator receiver domain K04M1_12070 PF00486 Transcriptional regulatory protein, C terminal K04M1_12090 PF04851 Type III restriction enzyme, res subunit K04M1_12090 PF00271 Helicase conserved C-terminal domain K04M1_12100 PF01479 S4 domain K04M1_12100 PF00849 RNA pseudouridylate synthase K04M1_12110 PF07690 Major Facilitator Superfamily K04M1_12130 PF13460 NAD(P)H-binding K04M1_12130 PF11066 Protein of unknown function (DUF2867) K04M1_12140 PF01554 MatE K04M1_12150 PF00005 ABC transporter K04M1_12180 PF06965 Na+/H+ antiporter 1 K04M1_12190 PF00440 Bacterial regulatory proteins, tetR family K04M1_12190 PF16295 Tetracyclin repressor-like, C-terminal domain K04M1_12200 PF09317 Domain of unknown function (DUF1974) K04M1_12200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M1_12200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M1_12200 PF02770 Acyl-CoA dehydrogenase, middle domain K04M1_12210 PF07055 Enoyl reductase FAD binding domain K04M1_12210 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase K04M1_12210 PF12241 Trans-2-enoyl-CoA reductase catalytic region K04M1_12220 PF06826 Predicted Permease Membrane Region K04M1_12220 PF02080 TrkA-C domain K04M1_12230 PF00462 Glutaredoxin K04M1_12250 PF00465 Iron-containing alcohol dehydrogenase K04M1_12260 PF01380 SIS domain K04M1_12260 PF01418 Helix-turn-helix domain, rpiR family K04M1_12270 PF00282 Pyridoxal-dependent decarboxylase conserved domain K04M1_12290 PF03956 Lysine exporter LysO K04M1_12310 PF04994 TfoX C-terminal domain K04M1_12310 PF04993 TfoX N-terminal domain K04M1_12350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_12350 PF00512 His Kinase A (phospho-acceptor) domain K04M1_12350 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_12370 PF00266 Aminotransferase class-V K04M1_12380 PF00291 Pyridoxal-phosphate dependent enzyme K04M1_12390 PF00005 ABC transporter K04M1_12390 PF00664 ABC transporter transmembrane region K04M1_12400 PF00664 ABC transporter transmembrane region K04M1_12400 PF00005 ABC transporter K04M1_12410 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_12430 PF00266 Aminotransferase class-V K04M1_12450 PF00990 Diguanylate cyclase, GGDEF domain K04M1_12450 PF00072 Response regulator receiver domain K04M1_12460 PF00939 Sodium:sulfate symporter transmembrane region K04M1_12470 PF02698 DUF218 domain K04M1_12480 PF00390 Malic enzyme, N-terminal domain K04M1_12480 PF03949 Malic enzyme, NAD binding domain K04M1_12490 PF11898 Domain of unknown function (DUF3418) K04M1_12490 PF00270 DEAD/DEAH box helicase K04M1_12490 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold K04M1_12490 PF00271 Helicase conserved C-terminal domain K04M1_12490 PF04408 Helicase associated domain (HA2) K04M1_12510 PF16655 PhoD-like phosphatase, N-terminal domain K04M1_12510 PF09423 PhoD-like phosphatase K04M1_12520 PF01259 SAICAR synthetase K04M1_12560 PF00691 OmpA family K04M1_12560 PF05736 OprF membrane domain K04M1_12590 PF01565 FAD binding domain K04M1_12590 PF02913 FAD linked oxidases, C-terminal domain K04M1_12590 PF13183 4Fe-4S dicluster domain K04M1_12600 PF04191 Phospholipid methyltransferase K04M1_12620 PF00221 Aromatic amino acid lyase K04M1_12630 PF01175 Urocanase Rossmann-like domain K04M1_12630 PF17392 Urocanase C-terminal domain K04M1_12630 PF17391 Urocanase N-terminal domain K04M1_12640 PF00491 Arginase family K04M1_12650 PF01979 Amidohydrolase family K04M1_12660 PF00392 Bacterial regulatory proteins, gntR family K04M1_12660 PF07702 UTRA domain K04M1_12690 PF03129 Anticodon binding domain K04M1_12690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K04M1_12690 PF02824 TGS domain K04M1_12690 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K04M1_12700 PF05198 Translation initiation factor IF-3, N-terminal domain K04M1_12700 PF00707 Translation initiation factor IF-3, C-terminal domain K04M1_12710 PF01632 Ribosomal protein L35 K04M1_12720 PF00453 Ribosomal protein L20 K04M1_12730 PF01906 Putative heavy-metal-binding K04M1_12800 PF01409 tRNA synthetases class II core domain (F) K04M1_12800 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain K04M1_12810 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain K04M1_12810 PF01588 Putative tRNA binding domain K04M1_12810 PF03147 Ferredoxin-fold anticodon binding domain K04M1_12810 PF03483 B3/4 domain K04M1_12810 PF03484 tRNA synthetase B5 domain K04M1_12830 PF00216 Bacterial DNA-binding protein K04M1_12850 PF05724 Thiopurine S-methyltransferase (TPMT) K04M1_12860 PF02222 ATP-grasp domain K04M1_12870 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K04M1_12870 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region K04M1_12880 PF04172 LrgB-like family K04M1_12890 PF03788 LrgA family K04M1_12900 PF08411 Exonuclease C-terminal K04M1_12900 PF00929 Exonuclease K04M1_13020 PF12826 Helix-hairpin-helix motif K04M1_13020 PF00533 BRCA1 C Terminus (BRCT) domain K04M1_13020 PF03120 NAD-dependent DNA ligase OB-fold domain K04M1_13020 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K04M1_13020 PF01653 NAD-dependent DNA ligase adenylation domain K04M1_13080 PF01695 IstB-like ATP binding protein K04M1_13380 PF13460 NAD(P)H-binding K04M1_13390 PF02277 Phosphoribosyltransferase K04M1_13400 PF02654 Cobalamin-5-phosphate synthase K04M1_13410 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase K04M1_13440 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K04M1_13450 PF01032 FecCD transport family K04M1_13460 PF00005 ABC transporter K04M1_13500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_13500 PF03466 LysR substrate binding domain K04M1_13520 PF01863 Protein of unknown function DUF45 K04M1_13530 PF05971 RNA methyltransferase K04M1_13570 PF00392 Bacterial regulatory proteins, gntR family K04M1_13580 PF00171 Aldehyde dehydrogenase family K04M1_13590 PF05544 Proline racemase K04M1_13600 PF01266 FAD dependent oxidoreductase K04M1_13600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K04M1_13620 PF02423 Ornithine cyclodeaminase/mu-crystallin family K04M1_13630 PF00701 Dihydrodipicolinate synthetase family K04M1_13640 PF08402 TOBE domain K04M1_13640 PF00005 ABC transporter K04M1_13650 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_13660 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_13680 PF08453 Peptidase family M9 N-terminal K04M1_13680 PF01752 Collagenase K04M1_13700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_13700 PF00005 ABC transporter K04M1_13710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_13710 PF00005 ABC transporter K04M1_13720 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_13720 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M1_13730 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_13740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_13750 PF07687 Peptidase dimerisation domain K04M1_13750 PF01546 Peptidase family M20/M25/M40 K04M1_13760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M1_13770 PF04209 homogentisate 1,2-dioxygenase K04M1_13790 PF14497 Glutathione S-transferase, C-terminal domain K04M1_13790 PF02798 Glutathione S-transferase, N-terminal domain K04M1_13890 PF07007 Lysozyme inhibitor LprI K04M1_13940 PF02694 Uncharacterised BCR, YnfA/UPF0060 family K04M1_13970 PF03553 Na+/H+ antiporter family K04M1_13980 PF00120 Glutamine synthetase, catalytic domain K04M1_13990 PF07722 Peptidase C26 K04M1_14000 PF01381 Helix-turn-helix K04M1_14000 PF07883 Cupin domain K04M1_14010 PF00171 Aldehyde dehydrogenase family K04M1_14020 PF01266 FAD dependent oxidoreductase K04M1_14030 PF00795 Carbon-nitrogen hydrolase K04M1_14040 PF04371 Porphyromonas-type peptidyl-arginine deiminase K04M1_14050 PF00171 Aldehyde dehydrogenase family K04M1_14060 PF00202 Aminotransferase class-III K04M1_14070 PF12792 CSS motif domain associated with EAL K04M1_14070 PF00563 EAL domain K04M1_14090 PF01047 MarR family K04M1_14100 PF04237 YjbR K04M1_14150 PF01627 Hpt domain K04M1_14150 PF00512 His Kinase A (phospho-acceptor) domain K04M1_14150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K04M1_14150 PF00672 HAMP domain K04M1_14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_14150 PF00072 Response regulator receiver domain K04M1_14160 PF03707 Bacterial signalling protein N terminal repeat K04M1_14160 PF00990 Diguanylate cyclase, GGDEF domain K04M1_14160 PF00563 EAL domain K04M1_14190 PF04204 Homoserine O-succinyltransferase K04M1_14210 PF00893 Small Multidrug Resistance protein K04M1_14220 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M1_14240 PF00239 Resolvase, N terminal domain K04M1_14240 PF13408 Recombinase zinc beta ribbon domain K04M1_14240 PF07508 Recombinase K04M1_14310 PF00239 Resolvase, N terminal domain K04M1_14310 PF02796 Helix-turn-helix domain of resolvase K04M1_14490 PF02074 Carboxypeptidase Taq (M32) metallopeptidase K04M1_14500 PF01810 LysE type translocator K04M1_14520 PF01235 Sodium:alanine symporter family K04M1_14570 PF00884 Sulfatase K04M1_14580 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K04M1_14590 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_14600 PF00571 CBS domain K04M1_14600 PF00005 ABC transporter K04M1_14630 PF02028 BCCT, betaine/carnitine/choline family transporter K04M1_14640 PF00583 Acetyltransferase (GNAT) family K04M1_14650 PF00202 Aminotransferase class-III K04M1_14660 PF06339 Ectoine synthase K04M1_14670 PF13840 ACT domain K04M1_14670 PF00696 Amino acid kinase family K04M1_14680 PF00884 Sulfatase K04M1_14700 PF03781 Sulfatase-modifying factor enzyme 1 K04M1_14710 PF04055 Radical SAM superfamily K04M1_14710 PF13186 Iron-sulfur cluster-binding domain K04M1_14740 PF00884 Sulfatase K04M1_14750 PF00884 Sulfatase K04M1_14770 PF03412 Peptidase C39 family K04M1_14770 PF00664 ABC transporter transmembrane region K04M1_14770 PF00005 ABC transporter K04M1_14790 PF02321 Outer membrane efflux protein K04M1_14820 PF08220 DeoR-like helix-turn-helix domain K04M1_14820 PF00455 DeoR C terminal sensor domain K04M1_14830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K04M1_14830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K04M1_14840 PF03928 Haem-degrading K04M1_14850 PF00990 Diguanylate cyclase, GGDEF domain K04M1_14850 PF00072 Response regulator receiver domain K04M1_14890 PF00939 Sodium:sulfate symporter transmembrane region K04M1_14900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_14900 PF00512 His Kinase A (phospho-acceptor) domain K04M1_14910 PF00158 Sigma-54 interaction domain K04M1_14910 PF00072 Response regulator receiver domain K04M1_14910 PF02954 Bacterial regulatory protein, Fis family K04M1_14920 PF03707 Bacterial signalling protein N terminal repeat K04M1_14920 PF00563 EAL domain K04M1_14920 PF00990 Diguanylate cyclase, GGDEF domain K04M1_14930 PF11871 Domain of unknown function (DUF3391) K04M1_14930 PF01966 HD domain K04M1_14940 PF01810 LysE type translocator K04M1_14950 PF11230 Protein of unknown function (DUF3029) K04M1_14960 PF04055 Radical SAM superfamily K04M1_14980 PF03741 Integral membrane protein TerC family K04M1_15000 PF01966 HD domain K04M1_15010 PF00465 Iron-containing alcohol dehydrogenase K04M1_15020 PF03222 Tryptophan/tyrosine permease family K04M1_15030 PF11871 Domain of unknown function (DUF3391) K04M1_15030 PF01966 HD domain K04M1_15050 PF00005 ABC transporter K04M1_15060 PF01497 Periplasmic binding protein K04M1_15070 PF01032 FecCD transport family K04M1_15080 PF00593 TonB dependent receptor K04M1_15080 PF07715 TonB-dependent Receptor Plug Domain K04M1_15100 PF00664 ABC transporter transmembrane region K04M1_15100 PF00005 ABC transporter K04M1_15110 PF00664 ABC transporter transmembrane region K04M1_15110 PF00005 ABC transporter K04M1_15120 PF07963 Prokaryotic N-terminal methylation motif K04M1_15120 PF08334 Type II secretion system (T2SS), protein G K04M1_15140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_15140 PF03466 LysR substrate binding domain K04M1_15160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K04M1_15160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K04M1_15190 PF00012 Hsp70 protein K04M1_15200 PF00012 Hsp70 protein K04M1_15220 PF00990 Diguanylate cyclase, GGDEF domain K04M1_15300 PF02525 Flavodoxin-like fold K04M1_15310 PF00270 DEAD/DEAH box helicase K04M1_15310 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold K04M1_15310 PF00271 Helicase conserved C-terminal domain K04M1_15310 PF04408 Helicase associated domain (HA2) K04M1_15310 PF11898 Domain of unknown function (DUF3418) K04M1_15340 PF02028 BCCT, betaine/carnitine/choline family transporter K04M1_15360 PF02397 Bacterial sugar transferase K04M1_15380 PF13439 Glycosyltransferase Family 4 K04M1_15380 PF00534 Glycosyl transferases group 1 K04M1_15440 PF00534 Glycosyl transferases group 1 K04M1_15440 PF13439 Glycosyltransferase Family 4 K04M1_15450 PF00534 Glycosyl transferases group 1 K04M1_15450 PF13439 Glycosyltransferase Family 4 K04M1_15460 PF00158 Sigma-54 interaction domain K04M1_15460 PF00072 Response regulator receiver domain K04M1_15460 PF02954 Bacterial regulatory protein, Fis family K04M1_15490 PF10531 SLBB domain K04M1_15490 PF02563 Polysaccharide biosynthesis/export protein K04M1_15510 PF01740 STAS domain K04M1_15530 PF14743 DNA ligase OB-like domain K04M1_15530 PF01068 ATP dependent DNA ligase domain K04M1_15550 PF01554 MatE K04M1_15560 PF00677 Lumazine binding domain K04M1_15590 PF00072 Response regulator receiver domain K04M1_15590 PF01339 CheB methylesterase K04M1_15600 PF05230 MASE2 domain K04M1_15600 PF00990 Diguanylate cyclase, GGDEF domain K04M1_15620 PF00877 NlpC/P60 family K04M1_15700 PF00480 ROK family K04M1_15720 PF00994 Probable molybdopterin binding domain K04M1_15720 PF03453 MoeA N-terminal region (domain I and II) K04M1_15720 PF03454 MoeA C-terminal region (domain IV) K04M1_15730 PF12804 MobA-like NTP transferase domain K04M1_15740 PF00005 ABC transporter K04M1_15740 PF08402 TOBE domain K04M1_15750 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_15760 PF12849 PBP superfamily domain K04M1_15770 PF02954 Bacterial regulatory protein, Fis family K04M1_15770 PF00158 Sigma-54 interaction domain K04M1_15770 PF00072 Response regulator receiver domain K04M1_15780 PF00512 His Kinase A (phospho-acceptor) domain K04M1_15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_15790 PF12848 ABC transporter K04M1_15790 PF00005 ABC transporter K04M1_15810 PF02634 FdhD/NarQ family K04M1_15850 PF02613 Nitrate reductase delta subunit K04M1_15870 PF01568 Molydopterin dinucleotide binding domain K04M1_15870 PF00384 Molybdopterin oxidoreductase K04M1_15870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M1_15880 PF13247 4Fe-4S dicluster domain K04M1_15930 PF00909 Ammonium Transporter Family K04M1_15950 PF02146 Sir2 family K04M1_15960 PF13416 Bacterial extracellular solute-binding protein K04M1_15970 PF13416 Bacterial extracellular solute-binding protein K04M1_15980 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_15990 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_16000 PF00005 ABC transporter K04M1_16000 PF08402 TOBE domain K04M1_16040 PF01171 PP-loop family K04M1_16050 PF00582 Universal stress protein family K04M1_16060 PF00027 Cyclic nucleotide-binding domain K04M1_16060 PF13545 Crp-like helix-turn-helix domain K04M1_16090 PF00403 Heavy-metal-associated domain K04M1_16110 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP K04M1_16110 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K04M1_16140 PF00115 Cytochrome C and Quinol oxidase polypeptide I K04M1_16170 PF00512 His Kinase A (phospho-acceptor) domain K04M1_16170 PF09308 LuxQ, periplasmic K04M1_16170 PF00072 Response regulator receiver domain K04M1_16170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_16200 PF17414 MatP C-terminal ribbon-helix-helix domain K04M1_16200 PF06303 MatP N-terminal domain K04M1_16210 PF05362 Lon protease (S16) C-terminal proteolytic domain K04M1_16210 PF13654 AAA domain K04M1_16220 PF07977 FabA-like domain K04M1_16230 PF04957 Ribosome modulation factor K04M1_16270 PF01170 Putative RNA methylase family UPF0020 K04M1_16270 PF02926 THUMP domain K04M1_16270 PF10672 S-adenosylmethionine-dependent methyltransferase K04M1_16280 PF07126 Cell-division protein ZapC K04M1_16290 PF01180 Dihydroorotate dehydrogenase K04M1_16300 PF05088 Bacterial NAD-glutamate dehydrogenase K04M1_16310 PF17432 Domain of unknown function (DUF3458_C) ARM repeats K04M1_16310 PF11940 Domain of unknown function (DUF3458) Ig-like fold K04M1_16310 PF01433 Peptidase family M1 domain K04M1_16330 PF11818 C-terminal domain of tail specific protease (DUF3340) K04M1_16330 PF17804 Tail specific protease N-terminal domain K04M1_16330 PF03572 Peptidase family S41 K04M1_16330 PF00595 PDZ domain K04M1_16340 PF17516 ProQ C-terminal domain K04M1_16340 PF04352 ProQ/FINO family K04M1_16350 PF13185 GAF domain K04M1_16360 PF00664 ABC transporter transmembrane region K04M1_16360 PF00005 ABC transporter K04M1_16370 PF04403 Paraquat-inducible protein A K04M1_16380 PF02470 MlaD protein K04M1_16390 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF K04M1_16390 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF K04M1_16390 PF01189 16S rRNA methyltransferase RsmB/F K04M1_16430 PF00793 DAHP synthetase I family K04M1_16440 PF04461 Protein of unknown function (DUF520) K04M1_16450 PF14824 Sirohaem biosynthesis protein central K04M1_16450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M1_16450 PF10414 Sirohaem synthase dimerisation region K04M1_16460 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_16480 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_16490 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_16500 PF00005 ABC transporter K04M1_16510 PF01027 Inhibitor of apoptosis-promoting Bax1 K04M1_16530 PF04358 DsrC like protein K04M1_16540 PF00708 Acylphosphatase K04M1_16550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_16550 PF00672 HAMP domain K04M1_16550 PF17200 Single Cache domain 2 K04M1_16560 PF17785 PUA-like domain K04M1_16560 PF10672 S-adenosylmethionine-dependent methyltransferase K04M1_16590 PF00691 OmpA family K04M1_16620 PF05736 OprF membrane domain K04M1_16620 PF00691 OmpA family K04M1_16640 PF00990 Diguanylate cyclase, GGDEF domain K04M1_16650 PF09339 IclR helix-turn-helix domain K04M1_16650 PF01614 Bacterial transcriptional regulator K04M1_16670 PF00248 Aldo/keto reductase family K04M1_16680 PF03466 LysR substrate binding domain K04M1_16680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_16700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_16700 PF03466 LysR substrate binding domain K04M1_16710 PF07690 Major Facilitator Superfamily K04M1_16730 PF16197 Ketoacyl-synthetase C-terminal extension K04M1_16730 PF00107 Zinc-binding dehydrogenase K04M1_16730 PF14765 Polyketide synthase dehydratase K04M1_16730 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M1_16730 PF08659 KR domain K04M1_16730 PF08240 Alcohol dehydrogenase GroES-like domain K04M1_16730 PF00698 Acyl transferase domain K04M1_16730 PF00550 Phosphopantetheine attachment site K04M1_16730 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M1_16740 PF12833 Helix-turn-helix domain K04M1_16740 PF02311 AraC-like ligand binding domain K04M1_16750 PF00857 Isochorismatase family K04M1_16760 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_16780 PF08240 Alcohol dehydrogenase GroES-like domain K04M1_16780 PF00107 Zinc-binding dehydrogenase K04M1_16790 PF02574 Homocysteine S-methyltransferase K04M1_16790 PF02965 Vitamin B12 dependent methionine synthase, activation domain K04M1_16790 PF00809 Pterin binding enzyme K04M1_16790 PF02310 B12 binding domain K04M1_16790 PF02607 B12 binding domain K04M1_16800 PF00005 ABC transporter K04M1_16810 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_16820 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_16850 PF00267 Gram-negative porin K04M1_16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_16860 PF03466 LysR substrate binding domain K04M1_16880 PF00873 AcrB/AcrD/AcrF family K04M1_16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_16890 PF03466 LysR substrate binding domain K04M1_16910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_16910 PF03466 LysR substrate binding domain K04M1_16920 PF01810 LysE type translocator K04M1_16940 PF06508 Queuosine biosynthesis protein QueC K04M1_16950 PF04055 Radical SAM superfamily K04M1_16980 PF00089 Trypsin K04M1_17000 PF00501 AMP-binding enzyme K04M1_17000 PF13193 AMP-binding enzyme C-terminal domain K04M1_17000 PF16177 Acetyl-coenzyme A synthetase N-terminus K04M1_17010 PF04303 PrpF protein K04M1_17020 PF00330 Aconitase family (aconitate hydratase) K04M1_17020 PF00694 Aconitase C-terminal domain K04M1_17030 PF00285 Citrate synthase, C-terminal domain K04M1_17090 PF01970 Tripartite tricarboxylate transporter TctA family K04M1_17110 PF01925 Sulfite exporter TauE/SafE K04M1_17120 PF16868 NMT1-like family K04M1_17130 PF05844 YopD protein K04M1_17150 PF07720 Tetratricopeptide repeat K04M1_17160 PF04792 V antigen (LcrV) protein K04M1_17180 PF09621 Type III secretion system regulator (LcrR) K04M1_17190 PF00771 FHIPEP family K04M1_17230 PF09059 TyeA K04M1_17250 PF18269 T3SS EscN ATPase C-terminal domain K04M1_17250 PF02874 ATP synthase alpha/beta family, beta-barrel domain K04M1_17250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M1_17280 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K04M1_17290 PF00813 FliP family K04M1_17300 PF01313 Bacterial export proteins, family 3 K04M1_17310 PF01311 Bacterial export proteins, family 1 K04M1_17320 PF01312 FlhB HrpN YscU SpaS Family K04M1_17330 PF12833 Helix-turn-helix domain K04M1_17330 PF12852 Cupin K04M1_17390 PF02661 Fic/DOC family K04M1_17410 PF02108 Flagellar assembly protein FliH K04M1_17430 PF01514 Secretory protein of YscJ/FliF family K04M1_17440 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI K04M1_17460 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) K04M1_17470 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF K04M1_17490 PF16693 Inner membrane component of T3SS, periplasmic domain K04M1_17490 PF16697 Inner membrane component of T3SS, cytoplasmic domain K04M1_17530 PF12833 Helix-turn-helix domain K04M1_17570 PF00171 Aldehyde dehydrogenase family K04M1_17580 PF01590 GAF domain K04M1_17580 PF02954 Bacterial regulatory protein, Fis family K04M1_17580 PF00158 Sigma-54 interaction domain K04M1_17610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M1_17610 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain K04M1_17620 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K04M1_17630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain K04M1_17630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain K04M1_17640 PF02311 AraC-like ligand binding domain K04M1_17640 PF12833 Helix-turn-helix domain K04M1_17650 PF00593 TonB dependent receptor K04M1_17650 PF07715 TonB-dependent Receptor Plug Domain K04M1_17660 PF00072 Response regulator receiver domain K04M1_17660 PF12431 Transcriptional regulator K04M1_17670 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain K04M1_17670 PF00989 PAS fold K04M1_17670 PF17203 Single cache domain 3 K04M1_17670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_17700 PF13533 Biotin-lipoyl like K04M1_17730 PF03466 LysR substrate binding domain K04M1_17730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_17760 PF08543 Phosphomethylpyrimidine kinase K04M1_17770 PF00155 Aminotransferase class I and II K04M1_17780 PF06826 Predicted Permease Membrane Region K04M1_17780 PF02080 TrkA-C domain K04M1_17800 PF13533 Biotin-lipoyl like K04M1_17850 PF00135 Carboxylesterase family K04M1_17880 PF01103 Surface antigen K04M1_17880 PF17243 POTRA domain TamA domain 1 K04M1_17890 PF11008 Protein of unknown function (DUF2846) K04M1_17900 PF01810 LysE type translocator K04M1_17910 PF01810 LysE type translocator K04M1_17920 PF07237 Protein of unknown function (DUF1428) K04M1_17960 PF02272 DHHA1 domain K04M1_17960 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K04M1_17960 PF01411 tRNA synthetases class II (A) K04M1_17970 PF13302 Acetyltransferase (GNAT) domain K04M1_17980 PF14602 Hexapeptide repeat of succinyl-transferase K04M1_17980 PF12464 Maltose acetyltransferase K04M1_18060 PF13333 Integrase core domain K04M1_18060 PF00665 Integrase core domain K04M1_18060 PF13276 HTH-like domain K04M1_18110 PF04463 Protein of unknown function (DUF523) K04M1_18120 PF00583 Acetyltransferase (GNAT) family K04M1_18230 PF13276 HTH-like domain K04M1_18230 PF13333 Integrase core domain K04M1_18230 PF00665 Integrase core domain K04M1_18280 PF01844 HNH endonuclease K04M1_18410 PF00589 Phage integrase family K04M1_18410 PF13495 Phage integrase, N-terminal SAM-like domain K04M1_18440 PF00990 Diguanylate cyclase, GGDEF domain K04M1_18450 PF00665 Integrase core domain K04M1_18460 PF06826 Predicted Permease Membrane Region K04M1_18470 PF00282 Pyridoxal-dependent decarboxylase conserved domain K04M1_18480 PF01544 CorA-like Mg2+ transporter protein K04M1_18500 PF01699 Sodium/calcium exchanger protein K04M1_18510 PF01699 Sodium/calcium exchanger protein K04M1_18540 PF04632 Fusaric acid resistance protein family K04M1_18550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_18550 PF00529 HlyD membrane-fusion protein of T1SS K04M1_18570 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family K04M1_18590 PF06826 Predicted Permease Membrane Region K04M1_18590 PF02080 TrkA-C domain K04M1_18600 PF00999 Sodium/hydrogen exchanger family K04M1_18620 PF13005 zinc-finger binding domain of transposase IS66 K04M1_18620 PF13007 Transposase C of IS166 homeodomain K04M1_18620 PF03050 Transposase IS66 family K04M1_18620 PF13817 IS66 C-terminal element K04M1_18640 PF04976 DMSO reductase anchor subunit (DmsC) K04M1_18650 PF13247 4Fe-4S dicluster domain K04M1_18650 PF12800 4Fe-4S binding domain K04M1_18660 PF01568 Molydopterin dinucleotide binding domain K04M1_18660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M1_18660 PF00384 Molybdopterin oxidoreductase K04M1_18670 PF02613 Nitrate reductase delta subunit K04M1_18680 PF12838 4Fe-4S dicluster domain K04M1_18680 PF00037 4Fe-4S binding domain K04M1_18690 PF00072 Response regulator receiver domain K04M1_18690 PF09308 LuxQ, periplasmic K04M1_18690 PF00512 His Kinase A (phospho-acceptor) domain K04M1_18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_18830 PF07274 Protein of unknown function (DUF1440) K04M1_18840 PF08495 FIST N domain K04M1_18840 PF10442 FIST C domain K04M1_18840 PF00990 Diguanylate cyclase, GGDEF domain K04M1_18840 PF00563 EAL domain K04M1_18850 PF00196 Bacterial regulatory proteins, luxR family K04M1_18850 PF00072 Response regulator receiver domain K04M1_18920 PF00691 OmpA family K04M1_18920 PF01389 OmpA-like transmembrane domain K04M1_19000 PF14310 Fibronectin type III-like domain K04M1_19000 PF00933 Glycosyl hydrolase family 3 N terminal domain K04M1_19000 PF01915 Glycosyl hydrolase family 3 C-terminal domain K04M1_19010 PF13737 Transposase DDE domain K04M1_19020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_19020 PF00512 His Kinase A (phospho-acceptor) domain K04M1_19020 PF01627 Hpt domain K04M1_19020 PF00989 PAS fold K04M1_19020 PF00072 Response regulator receiver domain K04M1_19020 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_19030 PF00196 Bacterial regulatory proteins, luxR family K04M1_19030 PF00072 Response regulator receiver domain K04M1_19050 PF13737 Transposase DDE domain K04M1_19060 PF00816 H-NS histone family K04M1_19160 PF00857 Isochorismatase family K04M1_19290 PF09905 DNA-binding protein VF530 K04M1_19320 PF13495 Phage integrase, N-terminal SAM-like domain K04M1_19320 PF00589 Phage integrase family K04M1_19350 PF13302 Acetyltransferase (GNAT) domain K04M1_19360 PF18024 Helix-turn-helix domain K04M1_19360 PF00158 Sigma-54 interaction domain K04M1_19370 PF05128 Domain of unknown function (DUF697) K04M1_19380 PF04317 YcjX-like family, DUF463 K04M1_19410 PF04715 Anthranilate synthase component I, N terminal region K04M1_19410 PF00425 chorismate binding enzyme K04M1_19420 PF09308 LuxQ, periplasmic K04M1_19420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_19420 PF00512 His Kinase A (phospho-acceptor) domain K04M1_19420 PF00072 Response regulator receiver domain K04M1_19440 PF00293 NUDIX domain K04M1_19450 PF03222 Tryptophan/tyrosine permease family K04M1_19460 PF03315 Serine dehydratase beta chain K04M1_19460 PF03313 Serine dehydratase alpha chain K04M1_19470 PF04940 Sensors of blue-light using FAD K04M1_19470 PF00563 EAL domain K04M1_19490 PF01242 6-pyruvoyl tetrahydropterin synthase K04M1_19500 PF17200 Single Cache domain 2 K04M1_19500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_19500 PF00672 HAMP domain K04M1_19510 PF01336 OB-fold nucleic acid binding domain K04M1_19510 PF00152 tRNA synthetases class II (D, K and N) K04M1_19530 PF00155 Aminotransferase class I and II K04M1_19530 PF00392 Bacterial regulatory proteins, gntR family K04M1_19560 PF00155 Aminotransferase class I and II K04M1_19600 PF00672 HAMP domain K04M1_19600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_19610 PF02028 BCCT, betaine/carnitine/choline family transporter K04M1_19630 PF00196 Bacterial regulatory proteins, luxR family K04M1_19630 PF00072 Response regulator receiver domain K04M1_19640 PF07730 Histidine kinase K04M1_19640 PF17200 Single Cache domain 2 K04M1_19650 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K04M1_19670 PF03480 Bacterial extracellular solute-binding protein, family 7 K04M1_19700 PF00753 Metallo-beta-lactamase superfamily K04M1_19710 PF05951 Bacterial protein of unknown function (DUF882) K04M1_19720 PF03734 L,D-transpeptidase catalytic domain K04M1_19720 PF01471 Putative peptidoglycan binding domain K04M1_19770 PF00925 GTP cyclohydrolase II K04M1_19790 PF03918 Cytochrome C biogenesis protein K04M1_19800 PF08534 Redoxin K04M1_19810 PF01578 Cytochrome C assembly protein K04M1_19810 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K04M1_19820 PF03916 Polysulphide reductase, NrfD K04M1_19830 PF13247 4Fe-4S dicluster domain K04M1_19850 PF02335 Cytochrome c552 K04M1_19880 PF03989 DNA gyrase C-terminal domain, beta-propeller K04M1_19880 PF00521 DNA gyrase/topoisomerase IV, subunit A K04M1_19900 PF03477 ATP cone domain K04M1_19900 PF00317 Ribonucleotide reductase, all-alpha domain K04M1_19900 PF02867 Ribonucleotide reductase, barrel domain K04M1_19910 PF00268 Ribonucleotide reductase, small chain K04M1_19930 PF00994 Probable molybdopterin binding domain K04M1_19960 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K04M1_19970 PF03435 Saccharopine dehydrogenase NADP binding domain K04M1_19970 PF16653 Saccharopine dehydrogenase C-terminal domain K04M1_19980 PF00202 Aminotransferase class-III K04M1_20030 PF01066 CDP-alcohol phosphatidyltransferase K04M1_20040 PF02151 UvrB/uvrC motif K04M1_20040 PF01541 GIY-YIG catalytic domain K04M1_20040 PF08459 UvrC Helix-hairpin-helix N-terminal K04M1_20050 PF00196 Bacterial regulatory proteins, luxR family K04M1_20050 PF00072 Response regulator receiver domain K04M1_20060 PF03104 DNA polymerase family B, exonuclease domain K04M1_20060 PF00136 DNA polymerase family B K04M1_20080 PF09285 Elongation factor P, C-terminal K04M1_20080 PF08207 Elongation factor P (EF-P) KOW-like domain K04M1_20080 PF01132 Elongation factor P (EF-P) OB domain K04M1_20090 PF04269 Protein of unknown function, DUF440 K04M1_20100 PF01479 S4 domain K04M1_20100 PF00849 RNA pseudouridylate synthase K04M1_20120 PF01300 Telomere recombination K04M1_20130 PF02811 PHP domain K04M1_20140 PF08056 Tryptophan operon leader peptide K04M1_20150 PF04715 Anthranilate synthase component I, N terminal region K04M1_20150 PF00425 chorismate binding enzyme K04M1_20160 PF00117 Glutamine amidotransferase class-I K04M1_20170 PF02885 Glycosyl transferase family, helical bundle domain K04M1_20170 PF00591 Glycosyl transferase family, a/b domain K04M1_20180 PF00218 Indole-3-glycerol phosphate synthase K04M1_20180 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K04M1_20190 PF00291 Pyridoxal-phosphate dependent enzyme K04M1_20200 PF00290 Tryptophan synthase alpha chain K04M1_20210 PF00027 Cyclic nucleotide-binding domain K04M1_20210 PF13545 Crp-like helix-turn-helix domain K04M1_20220 PF00501 AMP-binding enzyme K04M1_20220 PF13193 AMP-binding enzyme C-terminal domain K04M1_20230 PF00375 Sodium:dicarboxylate symporter family K04M1_20240 PF17327 Acyl homoserine lactone synthase K04M1_20250 PF00072 Response regulator receiver domain K04M1_20250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_20270 PF04279 Intracellular septation protein A K04M1_20280 PF03061 Thioesterase superfamily K04M1_20290 PF03795 YCII-related domain K04M1_20310 PF08267 Cobalamin-independent synthase, N-terminal domain K04M1_20310 PF01717 Cobalamin-independent synthase, Catalytic domain K04M1_20320 PF03466 LysR substrate binding domain K04M1_20320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_20350 PF00990 Diguanylate cyclase, GGDEF domain K04M1_20350 PF08448 PAS fold K04M1_20350 PF08447 PAS fold K04M1_20350 PF00563 EAL domain K04M1_20360 PF08497 Radical SAM N-terminal K04M1_20360 PF11842 Domain of unknown function (DUF3362) K04M1_20360 PF04055 Radical SAM superfamily K04M1_20400 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase K04M1_20410 PF00535 Glycosyl transferase family 2 K04M1_20420 PF00072 Response regulator receiver domain K04M1_20420 PF00486 Transcriptional regulatory protein, C terminal K04M1_20430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_20430 PF00672 HAMP domain K04M1_20430 PF00512 His Kinase A (phospho-acceptor) domain K04M1_20460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_20460 PF03466 LysR substrate binding domain K04M1_20470 PF00529 HlyD membrane-fusion protein of T1SS K04M1_20470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_20490 PF08267 Cobalamin-independent synthase, N-terminal domain K04M1_20490 PF01717 Cobalamin-independent synthase, Catalytic domain K04M1_20530 PF12704 MacB-like periplasmic core domain K04M1_20530 PF00005 ABC transporter K04M1_20530 PF02687 FtsX-like permease family K04M1_20540 PF02687 FtsX-like permease family K04M1_20540 PF00005 ABC transporter K04M1_20540 PF12704 MacB-like periplasmic core domain K04M1_20550 PF02687 FtsX-like permease family K04M1_20550 PF12704 MacB-like periplasmic core domain K04M1_20550 PF00005 ABC transporter K04M1_20570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_20600 PF05958 tRNA (Uracil-5-)-methyltransferase K04M1_20600 PF01938 TRAM domain K04M1_20620 PF00085 Thioredoxin K04M1_20630 PF13098 Thioredoxin-like domain K04M1_20630 PF11412 Disulphide bond corrector protein DsbC K04M1_20630 PF02683 Cytochrome C biogenesis protein transmembrane region K04M1_20650 PF00072 Response regulator receiver domain K04M1_20650 PF00196 Bacterial regulatory proteins, luxR family K04M1_20660 PF00512 His Kinase A (phospho-acceptor) domain K04M1_20660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_20670 PF13247 4Fe-4S dicluster domain K04M1_20680 PF03916 Polysulphide reductase, NrfD K04M1_20690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M1_20690 PF00384 Molybdopterin oxidoreductase K04M1_20690 PF01568 Molydopterin dinucleotide binding domain K04M1_20700 PF00034 Cytochrome c K04M1_20710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K04M1_20720 PF04403 Paraquat-inducible protein A K04M1_20730 PF02470 MlaD protein K04M1_20770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_20780 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family K04M1_20790 PF18073 Rubredoxin metal binding domain K04M1_20800 PF06305 Lipopolysaccharide assembly protein A domain K04M1_20810 PF00216 Bacterial DNA-binding protein K04M1_20820 PF00575 S1 RNA binding domain K04M1_20830 PF02224 Cytidylate kinase K04M1_20840 PF01343 Peptidase family S49 K04M1_20840 PF08496 Peptidase family S49 N-terminal K04M1_20850 PF00106 short chain dehydrogenase K04M1_20880 PF14579 Helix-hairpin-helix motif K04M1_20880 PF02811 PHP domain K04M1_20880 PF01336 OB-fold nucleic acid binding domain K04M1_20880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K04M1_20880 PF07733 Bacterial DNA polymerase III alpha NTPase domain K04M1_20890 PF01584 CheW-like domain K04M1_20890 PF00072 Response regulator receiver domain K04M1_20900 PF00480 ROK family K04M1_20910 PF02887 Pyruvate kinase, alpha/beta domain K04M1_20910 PF00224 Pyruvate kinase, barrel domain K04M1_20920 PF01734 Patatin-like phospholipase K04M1_20950 PF00209 Sodium:neurotransmitter symporter family K04M1_20980 PF02378 Phosphotransferase system, EIIC K04M1_20980 PF00367 phosphotransferase system, EIIB K04M1_20990 PF01026 TatD related DNase K04M1_21000 PF09115 DNA polymerase III, delta subunit, C terminal K04M1_21010 PF02223 Thymidylate kinase K04M1_21020 PF02618 YceG-like family K04M1_21030 PF01063 Amino-transferase class IV K04M1_21040 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M1_21040 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M1_21050 PF00550 Phosphopantetheine attachment site K04M1_21070 PF00698 Acyl transferase domain K04M1_21080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K04M1_21080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K04M1_21090 PF02504 Fatty acid synthesis protein K04M1_21100 PF01783 Ribosomal L32p protein family K04M1_21110 PF02620 Large ribosomal RNA subunit accumulation protein YceD K04M1_21120 PF02545 Maf-like protein K04M1_21130 PF00849 RNA pseudouridylate synthase K04M1_21130 PF01479 S4 domain K04M1_21140 PF12111 Polyribonucleotide phosphorylase C terminal K04M1_21140 PF00575 S1 RNA binding domain K04M1_21140 PF10150 Ribonuclease E/G family K04M1_21150 PF01740 STAS domain K04M1_21150 PF00916 Sulfate permease family K04M1_21160 PF01451 Low molecular weight phosphotyrosine protein phosphatase K04M1_21170 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K04M1_21170 PF12557 Cob(I)alamin adenosyltransferase N terminal K04M1_21190 PF00485 Phosphoribulokinase / Uridine kinase family K04M1_21200 PF10609 NUBPL iron-transfer P-loop NTPase K04M1_21210 PF09334 tRNA synthetases class I (M) K04M1_21210 PF01588 Putative tRNA binding domain K04M1_21250 PF00392 Bacterial regulatory proteins, gntR family K04M1_21250 PF07840 FadR C-terminal domain K04M1_21260 PF06450 Bacterial Na+/H+ antiporter B (NhaB) K04M1_21270 PF02600 Disulfide bond formation protein DsbB K04M1_21280 PF03695 Uncharacterised protein family (UPF0149) K04M1_21280 PF02810 SEC-C motif K04M1_21290 PF01207 Dihydrouridine synthase (Dus) K04M1_21300 PF00990 Diguanylate cyclase, GGDEF domain K04M1_21300 PF17158 Membrane-associated sensor, integral membrane domain K04M1_21310 PF02903 Alpha amylase, N-terminal ig-like domain K04M1_21310 PF00128 Alpha amylase, catalytic domain K04M1_21320 PF00005 ABC transporter K04M1_21330 PF02653 Branched-chain amino acid transport system / permease component K04M1_21350 PF04217 Protein of unknown function, DUF412 K04M1_21360 PF00871 Acetokinase family K04M1_21370 PF01515 Phosphate acetyl/butaryl transferase K04M1_21370 PF07085 DRTGG domain K04M1_21390 PF13409 Glutathione S-transferase, N-terminal domain K04M1_21400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_21400 PF00005 ABC transporter K04M1_21410 PF00005 ABC transporter K04M1_21410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_21420 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M1_21420 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_21430 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_21440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_21450 PF02391 MoaE protein K04M1_21460 PF02597 ThiS family K04M1_21470 PF01967 MoaC family K04M1_21480 PF00994 Probable molybdopterin binding domain K04M1_21490 PF04055 Radical SAM superfamily K04M1_21490 PF06463 Molybdenum Cofactor Synthesis C K04M1_21500 PF01933 Uncharacterised protein family UPF0052 K04M1_21510 PF01627 Hpt domain K04M1_21520 PF00158 Sigma-54 interaction domain K04M1_21520 PF00072 Response regulator receiver domain K04M1_21520 PF02954 Bacterial regulatory protein, Fis family K04M1_21530 PF17757 UvrB interaction domain K04M1_21530 PF00271 Helicase conserved C-terminal domain K04M1_21530 PF04851 Type III restriction enzyme, res subunit K04M1_21530 PF02151 UvrB/uvrC motif K04M1_21530 PF12344 Ultra-violet resistance protein B K04M1_21550 PF01228 Glycine radical K04M1_21550 PF02901 Pyruvate formate lyase-like K04M1_21560 PF02508 Rnf-Nqr subunit, membrane protein K04M1_21570 PF04060 Putative Fe-S cluster K04M1_21580 PF13375 RnfC Barrel sandwich hybrid domain K04M1_21580 PF10531 SLBB domain K04M1_21580 PF12838 4Fe-4S dicluster domain K04M1_21580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit K04M1_21590 PF03116 NQR2, RnfD, RnfE family K04M1_21600 PF04205 FMN-binding domain K04M1_21610 PF02508 Rnf-Nqr subunit, membrane protein K04M1_21620 PF00730 HhH-GPD superfamily base excision DNA repair protein K04M1_21620 PF00633 Helix-hairpin-helix motif K04M1_21620 PF10576 Iron-sulfur binding domain of endonuclease III K04M1_21630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M1_21640 PF10952 Protein of unknown function (DUF2753) K04M1_21650 PF00691 OmpA family K04M1_21650 PF18393 MotY N-terminal domain K04M1_21660 PF00929 Exonuclease K04M1_21670 PF13726 Na+-H+ antiporter family K04M1_21670 PF03553 Na+/H+ antiporter family K04M1_21710 PF00462 Glutaredoxin K04M1_21720 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K04M1_21720 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K04M1_21750 PF00171 Aldehyde dehydrogenase family K04M1_21750 PF00465 Iron-containing alcohol dehydrogenase K04M1_21760 PF01914 MarC family integral membrane protein K04M1_21770 PF00520 Ion transport protein K04M1_21770 PF00027 Cyclic nucleotide-binding domain K04M1_21780 PF01118 Semialdehyde dehydrogenase, NAD binding domain K04M1_21780 PF02774 Semialdehyde dehydrogenase, dimerisation domain K04M1_21790 PF03553 Na+/H+ antiporter family K04M1_21820 PF04245 37-kD nucleoid-associated bacterial protein K04M1_21830 PF07208 Protein of unknown function (DUF1414) K04M1_21840 PF11893 Domain of unknown function (DUF3413) K04M1_21840 PF00884 Sulfatase K04M1_21860 PF00850 Histone deacetylase domain K04M1_21870 PF00106 short chain dehydrogenase K04M1_21890 PF01751 Toprim domain K04M1_21890 PF01131 DNA topoisomerase K04M1_21900 PF00881 Nitroreductase family K04M1_21920 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_21920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M1_21930 PF01343 Peptidase family S49 K04M1_21940 PF17763 Glutaminase/Asparaginase C-terminal domain K04M1_21940 PF00710 Asparaginase, N-terminal K04M1_21950 PF07023 Protein of unknown function (DUF1315) K04M1_21970 PF01641 SelR domain K04M1_21980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M1_21980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K04M1_21990 PF01263 Aldose 1-epimerase K04M1_22000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_22000 PF08447 PAS fold K04M1_22000 PF13426 PAS domain K04M1_22010 PF13847 Methyltransferase domain K04M1_22040 PF00245 Alkaline phosphatase K04M1_22060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M1_22070 PF03992 Antibiotic biosynthesis monooxygenase K04M1_22080 PF05552 Conserved TM helix K04M1_22080 PF00924 Mechanosensitive ion channel K04M1_22090 PF03692 Putative zinc- or iron-chelating domain K04M1_22100 PF04226 Transglycosylase associated protein K04M1_22110 PF03692 Putative zinc- or iron-chelating domain K04M1_22120 PF00230 Major intrinsic protein K04M1_22130 PF02132 RecR protein K04M1_22130 PF13662 Toprim domain K04M1_22140 PF02575 YbaB/EbfC DNA-binding family K04M1_22150 PF12169 DNA polymerase III subunits gamma and tau domain III K04M1_22150 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding K04M1_22150 PF12170 DNA polymerase III tau subunit V interacting with alpha K04M1_22160 PF00156 Phosphoribosyl transferase domain K04M1_22170 PF04304 Protein of unknown function (DUF454) K04M1_22190 PF00072 Response regulator receiver domain K04M1_22200 PF03466 LysR substrate binding domain K04M1_22200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_22210 PF00156 Phosphoribosyl transferase domain K04M1_22220 PF02674 Colicin V production protein K04M1_22230 PF05036 Sporulation related domain K04M1_22240 PF02875 Mur ligase family, glutamate ligase domain K04M1_22240 PF08245 Mur ligase middle domain K04M1_22250 PF17848 Acetyl-coA carboxylase zinc finger domain K04M1_22250 PF01039 Carboxyl transferase domain K04M1_22260 PF01416 tRNA pseudouridine synthase K04M1_22280 PF02774 Semialdehyde dehydrogenase, dimerisation domain K04M1_22280 PF01118 Semialdehyde dehydrogenase, NAD binding domain K04M1_22290 PF11890 Domain of unknown function (DUF3410) K04M1_22290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M1_22290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K04M1_22300 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M1_22300 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M1_22310 PF01266 FAD dependent oxidoreductase K04M1_22310 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K04M1_22320 PF03358 NADPH-dependent FMN reductase K04M1_22330 PF08891 YfcL protein K04M1_22340 PF04315 Elongation factor P hydroxylase K04M1_22350 PF03458 UPF0126 domain K04M1_22360 PF01264 Chorismate synthase K04M1_22370 PF05175 Methyltransferase small domain K04M1_22380 PF01713 Smr domain K04M1_22390 PF00300 Histidine phosphatase superfamily (branch 1) K04M1_22400 PF05193 Peptidase M16 inactive domain K04M1_22400 PF16187 Middle or third domain of peptidase_M16 K04M1_22400 PF00675 Insulinase (Peptidase family M16) K04M1_22420 PF00378 Enoyl-CoA hydratase/isomerase K04M1_22420 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K04M1_22420 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K04M1_22430 PF02803 Thiolase, C-terminal domain K04M1_22430 PF00108 Thiolase, N-terminal domain K04M1_22450 PF08281 Sigma-70, region 4 K04M1_22450 PF04542 Sigma-70 region 2 K04M1_22470 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M1_22480 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M1_22510 PF04333 MlaA lipoprotein K04M1_22520 PF03918 Cytochrome C biogenesis protein K04M1_22530 PF03918 Cytochrome C biogenesis protein K04M1_22540 PF08534 Redoxin K04M1_22550 PF01578 Cytochrome C assembly protein K04M1_22550 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K04M1_22560 PF03100 CcmE K04M1_22570 PF04995 Heme exporter protein D (CcmD) K04M1_22580 PF01578 Cytochrome C assembly protein K04M1_22590 PF03379 CcmB protein K04M1_22600 PF00005 ABC transporter K04M1_22620 PF01584 CheW-like domain K04M1_22640 PF13614 AAA domain K04M1_22650 PF01339 CheB methylesterase K04M1_22650 PF00072 Response regulator receiver domain K04M1_22660 PF01627 Hpt domain K04M1_22660 PF02895 Signal transducing histidine kinase, homodimeric domain K04M1_22660 PF01584 CheW-like domain K04M1_22660 PF07194 P2 response regulator binding domain K04M1_22660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_22670 PF04344 Chemotaxis phosphatase, CheZ K04M1_22680 PF00072 Response regulator receiver domain K04M1_22690 PF04545 Sigma-70, region 4 K04M1_22690 PF04542 Sigma-70 region 2 K04M1_22690 PF04539 Sigma-70 region 3 K04M1_22700 PF10609 NUBPL iron-transfer P-loop NTPase K04M1_22710 PF00448 SRP54-type protein, GTPase domain K04M1_22720 PF00771 FHIPEP family K04M1_22730 PF01312 FlhB HrpN YscU SpaS Family K04M1_22740 PF01311 Bacterial export proteins, family 1 K04M1_22750 PF01313 Bacterial export proteins, family 3 K04M1_22760 PF00813 FliP family K04M1_22770 PF04347 Flagellar biosynthesis protein, FliO K04M1_22780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K04M1_22790 PF02154 Flagellar motor switch protein FliM K04M1_22790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K04M1_22840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M1_22840 PF18269 T3SS EscN ATPase C-terminal domain K04M1_22860 PF01706 FliG C-terminal domain K04M1_22860 PF14841 FliG middle domain K04M1_22860 PF14842 FliG N-terminal domain K04M1_22870 PF01514 Secretory protein of YscJ/FliF family K04M1_22870 PF08345 Flagellar M-ring protein C-terminal K04M1_22880 PF02049 Flagellar hook-basal body complex protein FliE K04M1_22890 PF02954 Bacterial regulatory protein, Fis family K04M1_22890 PF00072 Response regulator receiver domain K04M1_22890 PF00158 Sigma-54 interaction domain K04M1_22900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_22900 PF00512 His Kinase A (phospho-acceptor) domain K04M1_22910 PF02954 Bacterial regulatory protein, Fis family K04M1_22910 PF00072 Response regulator receiver domain K04M1_22910 PF00158 Sigma-54 interaction domain K04M1_22920 PF02561 Flagellar protein FliS K04M1_22940 PF07195 Flagellar hook-associated protein 2 C-terminus K04M1_22940 PF02465 Flagellar hook-associated protein 2 N-terminus K04M1_22940 PF07196 Flagellin hook IN motif K04M1_22950 PF03646 FlaG protein K04M1_22960 PF00700 Bacterial flagellin C-terminal helical region K04M1_22960 PF07196 Flagellin hook IN motif K04M1_22960 PF00669 Bacterial flagellin N-terminal helical region K04M1_22970 PF00669 Bacterial flagellin N-terminal helical region K04M1_22970 PF07196 Flagellin hook IN motif K04M1_22970 PF00700 Bacterial flagellin C-terminal helical region K04M1_22980 PF00700 Bacterial flagellin C-terminal helical region K04M1_22980 PF00669 Bacterial flagellin N-terminal helical region K04M1_22980 PF07196 Flagellin hook IN motif K04M1_22990 PF04261 Dyp-type peroxidase family K04M1_23000 PF11143 Protein of unknown function (DUF2919) K04M1_23040 PF03960 ArsC family K04M1_23050 PF01546 Peptidase family M20/M25/M40 K04M1_23050 PF07687 Peptidase dimerisation domain K04M1_23090 PF00701 Dihydrodipicolinate synthetase family K04M1_23110 PF00578 AhpC/TSA family K04M1_23160 PF00578 AhpC/TSA family K04M1_23180 PF00890 FAD binding domain K04M1_23180 PF02910 Fumarate reductase flavoprotein C-term K04M1_23190 PF00005 ABC transporter K04M1_23190 PF03412 Peptidase C39 family K04M1_23190 PF00664 ABC transporter transmembrane region K04M1_23200 PF00529 HlyD membrane-fusion protein of T1SS K04M1_23200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_23240 PF00535 Glycosyl transferase family 2 K04M1_23290 PF02954 Bacterial regulatory protein, Fis family K04M1_23310 PF00580 UvrD/REP helicase N-terminal domain K04M1_23310 PF13361 UvrD-like helicase C-terminal domain K04M1_23340 PF00512 His Kinase A (phospho-acceptor) domain K04M1_23340 PF09308 LuxQ, periplasmic K04M1_23340 PF00072 Response regulator receiver domain K04M1_23340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_23370 PF00665 Integrase core domain K04M1_23370 PF13333 Integrase core domain K04M1_23370 PF13276 HTH-like domain K04M1_23380 PF00313 'Cold-shock' DNA-binding domain K04M1_23430 PF00313 'Cold-shock' DNA-binding domain K04M1_23440 PF02899 Phage integrase, N-terminal SAM-like domain K04M1_23440 PF00589 Phage integrase family K04M1_23450 PF01145 SPFH domain / Band 7 family K04M1_23450 PF12221 Bacterial membrane protein N terminal K04M1_23470 PF06965 Na+/H+ antiporter 1 K04M1_23480 PF00694 Aconitase C-terminal domain K04M1_23480 PF00330 Aconitase family (aconitate hydratase) K04M1_23490 PF00313 'Cold-shock' DNA-binding domain K04M1_23520 PF00578 AhpC/TSA family K04M1_23530 PF01594 AI-2E family transporter K04M1_23550 PF01435 Peptidase family M48 K04M1_23550 PF13181 Tetratricopeptide repeat K04M1_23560 PF03960 ArsC family K04M1_23570 PF03358 NADPH-dependent FMN reductase K04M1_23600 PF00860 Permease family K04M1_23620 PF00586 AIR synthase related protein, N-terminal domain K04M1_23620 PF02769 AIR synthase related protein, C-terminal domain K04M1_23630 PF00551 Formyl transferase K04M1_23650 PF13230 Glutamine amidotransferases class-II K04M1_23660 PF13580 SIS domain K04M1_23670 PF09317 Domain of unknown function (DUF1974) K04M1_23670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M1_23670 PF02770 Acyl-CoA dehydrogenase, middle domain K04M1_23670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M1_23680 PF01740 STAS domain K04M1_23680 PF00916 Sulfate permease family K04M1_23730 PF00929 Exonuclease K04M1_23740 PF00075 RNase H K04M1_23750 PF08241 Methyltransferase domain K04M1_23760 PF16123 Hydroxyacylglutathione hydrolase C-terminus K04M1_23760 PF00753 Metallo-beta-lactamase superfamily K04M1_23770 PF01464 Transglycosylase SLT domain K04M1_23770 PF01476 LysM domain K04M1_23790 PF03372 Endonuclease/Exonuclease/phosphatase family K04M1_23800 PF00543 Nitrogen regulatory protein P-II K04M1_23810 PF00034 Cytochrome c K04M1_23820 PF01171 PP-loop family K04M1_23820 PF09179 TilS substrate binding domain K04M1_23820 PF11734 TilS substrate C-terminal domain K04M1_23830 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit K04M1_23840 PF01336 OB-fold nucleic acid binding domain K04M1_23840 PF07733 Bacterial DNA polymerase III alpha NTPase domain K04M1_23840 PF02811 PHP domain K04M1_23840 PF14579 Helix-hairpin-helix motif K04M1_23840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K04M1_23850 PF01351 Ribonuclease HII K04M1_23860 PF02684 Lipid-A-disaccharide synthetase K04M1_23870 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 K04M1_23870 PF00132 Bacterial transferase hexapeptide (six repeats) K04M1_23880 PF07977 FabA-like domain K04M1_23890 PF00132 Bacterial transferase hexapeptide (six repeats) K04M1_23890 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K04M1_23900 PF03938 Outer membrane protein (OmpH-like) K04M1_23910 PF07244 Surface antigen variable number repeat K04M1_23910 PF01103 Surface antigen K04M1_23920 PF17820 PDZ domain K04M1_23920 PF02163 Peptidase family M50 K04M1_23930 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase K04M1_23930 PF13288 DXP reductoisomerase C-terminal domain K04M1_23930 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain K04M1_23950 PF01255 Putative undecaprenyl diphosphate synthase K04M1_23960 PF01765 Ribosome recycling factor K04M1_23970 PF00696 Amino acid kinase family K04M1_23980 PF00889 Elongation factor TS K04M1_23990 PF00318 Ribosomal protein S2 K04M1_24000 PF00557 Metallopeptidase family M24 K04M1_24010 PF01909 Nucleotidyltransferase domain K04M1_24010 PF01842 ACT domain K04M1_24010 PF08335 GlnD PII-uridylyltransferase K04M1_24010 PF01966 HD domain K04M1_24020 PF11944 Protein of unknown function (DUF3461) K04M1_24030 PF00849 RNA pseudouridylate synthase K04M1_24040 PF04287 tRNA pseudouridine synthase C K04M1_24090 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 K04M1_24100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K04M1_24100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K04M1_24110 PF01370 NAD dependent epimerase/dehydratase family K04M1_24160 PF03806 AbgT putative transporter family K04M1_24170 PF01197 Ribosomal protein L31 K04M1_24180 PF18389 TrmO C-terminal domain K04M1_24180 PF01980 tRNA-methyltransferase O K04M1_24190 PF04073 Aminoacyl-tRNA editing domain K04M1_24190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K04M1_24190 PF03129 Anticodon binding domain K04M1_24210 PF06786 Uncharacterised protein family (UPF0253) K04M1_24230 PF00209 Sodium:neurotransmitter symporter family K04M1_24240 PF00704 Glycosyl hydrolases family 18 K04M1_24240 PF06483 Chitinase C K04M1_24260 PF01272 Transcription elongation factor, GreA/GreB, C-term K04M1_24260 PF03449 Transcription elongation factor, N-terminal K04M1_24270 PF16124 RecQ zinc-binding K04M1_24270 PF00570 HRDC domain K04M1_24270 PF00271 Helicase conserved C-terminal domain K04M1_24270 PF00270 DEAD/DEAH box helicase K04M1_24270 PF09382 RQC domain K04M1_24320 PF11798 IMS family HHH motif K04M1_24320 PF11799 impB/mucB/samB family C-terminal domain K04M1_24320 PF00817 impB/mucB/samB family K04M1_24480 PF01740 STAS domain K04M1_24480 PF00916 Sulfate permease family K04M1_24490 PF00582 Universal stress protein family K04M1_24500 PF13302 Acetyltransferase (GNAT) domain K04M1_24500 PF00117 Glutamine amidotransferase class-I K04M1_24500 PF03352 Methyladenine glycosylase K04M1_24500 PF13673 Acetyltransferase (GNAT) domain K04M1_24500 PF00958 GMP synthase C terminal domain K04M1_24600 PF11798 IMS family HHH motif K04M1_24600 PF11799 impB/mucB/samB family C-terminal domain K04M1_24600 PF00817 impB/mucB/samB family K04M1_24620 PF00072 Response regulator receiver domain K04M1_24620 PF00990 Diguanylate cyclase, GGDEF domain K04M1_24640 PF02424 ApbE family K04M1_24650 PF00970 Oxidoreductase FAD-binding domain K04M1_24650 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M1_24650 PF00175 Oxidoreductase NAD-binding domain K04M1_24660 PF02508 Rnf-Nqr subunit, membrane protein K04M1_24670 PF02508 Rnf-Nqr subunit, membrane protein K04M1_24680 PF04205 FMN-binding domain K04M1_24690 PF03116 NQR2, RnfD, RnfE family K04M1_24700 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) K04M1_24700 PF11973 NQRA C-terminal domain K04M1_24710 PF01722 BolA-like protein K04M1_24720 PF05175 Methyltransferase small domain K04M1_24730 PF03923 Uncharacterized lipoprotein K04M1_24730 PF08139 Prokaryotic membrane lipoprotein lipid attachment site K04M1_24740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K04M1_24750 PF07690 Major Facilitator Superfamily K04M1_24770 PF04545 Sigma-70, region 4 K04M1_24770 PF04542 Sigma-70 region 2 K04M1_24800 PF03502 Nucleoside-specific channel-forming protein, Tsx K04M1_24810 PF02558 Ketopantoate reductase PanE/ApbA K04M1_24810 PF08546 Ketopantoate reductase PanE/ApbA C terminal K04M1_24820 PF01965 DJ-1/PfpI family K04M1_24830 PF00266 Aminotransferase class-V K04M1_24840 PF17158 Membrane-associated sensor, integral membrane domain K04M1_24840 PF00990 Diguanylate cyclase, GGDEF domain K04M1_24850 PF02657 Fe-S metabolism associated domain K04M1_24860 PF00899 ThiF family K04M1_24870 PF03562 MltA specific insert domain K04M1_24870 PF06725 3D domain K04M1_24890 PF00696 Amino acid kinase family K04M1_24890 PF00583 Acetyltransferase (GNAT) family K04M1_24910 PF13538 UvrD-like helicase C-terminal domain K04M1_24920 PF00580 UvrD/REP helicase N-terminal domain K04M1_24920 PF12705 PD-(D/E)XK nuclease superfamily K04M1_24920 PF13361 UvrD-like helicase C-terminal domain K04M1_24930 PF17946 RecC C-terminal domain K04M1_24940 PF08676 MutL C terminal dimerisation domain K04M1_24940 PF01119 DNA mismatch repair protein, C-terminal domain K04M1_25000 PF00665 Integrase core domain K04M1_25010 PF01527 Transposase K04M1_25030 PF00145 C-5 cytosine-specific DNA methylase K04M1_25040 PF00145 C-5 cytosine-specific DNA methylase K04M1_25050 PF00884 Sulfatase K04M1_25050 PF11893 Domain of unknown function (DUF3413) K04M1_25070 PF03466 LysR substrate binding domain K04M1_25070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_25080 PF07130 YebG protein K04M1_25110 PF14602 Hexapeptide repeat of succinyl-transferase K04M1_25110 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle K04M1_25120 PF03009 Glycerophosphoryl diester phosphodiesterase family K04M1_25130 PF07690 Major Facilitator Superfamily K04M1_25140 PF00230 Major intrinsic protein K04M1_25150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain K04M1_25150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain K04M1_25160 PF00455 DeoR C terminal sensor domain K04M1_25160 PF08220 DeoR-like helix-turn-helix domain K04M1_25170 PF16901 C-terminal domain of alpha-glycerophosphate oxidase K04M1_25170 PF01266 FAD dependent oxidoreductase K04M1_25180 PF01544 CorA-like Mg2+ transporter protein K04M1_25220 PF00356 Bacterial regulatory proteins, lacI family K04M1_25230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_25230 PF03466 LysR substrate binding domain K04M1_25250 PF00196 Bacterial regulatory proteins, luxR family K04M1_25310 PF00501 AMP-binding enzyme K04M1_25330 PF03466 LysR substrate binding domain K04M1_25330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_25340 PF00009 Elongation factor Tu GTP binding domain K04M1_25340 PF03764 Elongation factor G, domain IV K04M1_25340 PF14492 Elongation Factor G, domain II K04M1_25340 PF00679 Elongation factor G C-terminus K04M1_25340 PF03144 Elongation factor Tu domain 2 K04M1_25350 PF18073 Rubredoxin metal binding domain K04M1_25370 PF18429 Domain of unknown function (DUF5609) K04M1_25390 PF01048 Phosphorylase superfamily K04M1_25400 PF01676 Metalloenzyme superfamily K04M1_25410 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain K04M1_25410 PF02885 Glycosyl transferase family, helical bundle domain K04M1_25410 PF00591 Glycosyl transferase family, a/b domain K04M1_25420 PF01791 DeoC/LacD family aldolase K04M1_25430 PF07670 Nucleoside recognition K04M1_25430 PF07662 Na+ dependent nucleoside transporter C-terminus K04M1_25430 PF01773 Na+ dependent nucleoside transporter N-terminus K04M1_25440 PF01026 TatD related DNase K04M1_25460 PF00009 Elongation factor Tu GTP binding domain K04M1_25460 PF03144 Elongation factor Tu domain 2 K04M1_25460 PF16658 Class II release factor RF3, C-terminal domain K04M1_25500 PF13508 Acetyltransferase (GNAT) domain K04M1_25520 PF03707 Bacterial signalling protein N terminal repeat K04M1_25520 PF00563 EAL domain K04M1_25520 PF00990 Diguanylate cyclase, GGDEF domain K04M1_25550 PF01554 MatE K04M1_25570 PF07719 Tetratricopeptide repeat K04M1_25570 PF13181 Tetratricopeptide repeat K04M1_25580 PF03725 3' exoribonuclease family, domain 2 K04M1_25580 PF00013 KH domain K04M1_25580 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain K04M1_25580 PF01138 3' exoribonuclease family, domain 1 K04M1_25580 PF00575 S1 RNA binding domain K04M1_25590 PF00312 Ribosomal protein S15 K04M1_25600 PF16198 tRNA pseudouridylate synthase B C-terminal domain K04M1_25600 PF09157 Pseudouridine synthase II TruB, C-terminal K04M1_25600 PF01509 TruB family pseudouridylate synthase (N terminal domain) K04M1_25610 PF02033 Ribosome-binding factor A K04M1_25620 PF00009 Elongation factor Tu GTP binding domain K04M1_25620 PF11987 Translation-initiation factor 2 K04M1_25620 PF04760 Translation initiation factor IF-2, N-terminal region K04M1_25620 PF08364 Bacterial translation initiation factor IF-2 associated region K04M1_25630 PF13184 NusA-like KH domain K04M1_25630 PF08529 NusA N-terminal domain K04M1_25630 PF00575 S1 RNA binding domain K04M1_25640 PF02576 RimP N-terminal domain K04M1_25640 PF17384 RimP C-terminal SH3 domain K04M1_25670 PF03840 Preprotein translocase SecG subunit K04M1_25680 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K04M1_25680 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K04M1_25680 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K04M1_25680 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K04M1_25690 PF00809 Pterin binding enzyme K04M1_25700 PF00004 ATPase family associated with various cellular activities (AAA) K04M1_25700 PF17862 AAA+ lid domain K04M1_25700 PF06480 FtsH Extracellular K04M1_25700 PF01434 Peptidase family M41 K04M1_25710 PF01728 FtsJ-like methyltransferase K04M1_25720 PF01985 CRS1 / YhbY (CRM) domain K04M1_25730 PF01272 Transcription elongation factor, GreA/GreB, C-term K04M1_25730 PF03449 Transcription elongation factor, N-terminal K04M1_25740 PF13609 Gram-negative porin K04M1_25750 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family K04M1_25770 PF00579 tRNA synthetases class I (W and Y) K04M1_25780 PF01551 Peptidase family M23 K04M1_25780 PF08525 Opacity-associated protein A N-terminal motif K04M1_25780 PF01476 LysM domain K04M1_25790 PF00873 AcrB/AcrD/AcrF family K04M1_25810 PF01521 Iron-sulphur cluster biosynthesis K04M1_25820 PF00202 Aminotransferase class-III K04M1_25830 PF01594 AI-2E family transporter K04M1_25840 PF08468 Methyltransferase small domain N-terminal K04M1_25840 PF05175 Methyltransferase small domain K04M1_25850 PF00072 Response regulator receiver domain K04M1_25850 PF00512 His Kinase A (phospho-acceptor) domain K04M1_25850 PF09308 LuxQ, periplasmic K04M1_25850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_25860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_25870 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_25880 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_25880 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M1_25890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_25890 PF00005 ABC transporter K04M1_25900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_25900 PF00005 ABC transporter K04M1_25920 PF01869 BadF/BadG/BcrA/BcrD ATPase family K04M1_25930 PF00728 Glycosyl hydrolase family 20, catalytic domain K04M1_25930 PF02838 Glycosyl hydrolase family 20, domain 2 K04M1_25940 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain K04M1_25940 PF06165 Glycosyltransferase family 36 K04M1_25950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K04M1_25950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K04M1_25950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K04M1_25950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K04M1_25960 PF08402 TOBE domain K04M1_25960 PF00005 ABC transporter K04M1_25980 PF13416 Bacterial extracellular solute-binding protein K04M1_25990 PF00909 Ammonium Transporter Family K04M1_26000 PF00543 Nitrogen regulatory protein P-II K04M1_26010 PF06062 Uncharacterised protein family (UPF0231) K04M1_26020 PF11791 Aconitate B N-terminal domain K04M1_26020 PF06434 Aconitate hydratase 2 N-terminus K04M1_26020 PF00330 Aconitase family (aconitate hydratase) K04M1_26030 PF01734 Patatin-like phospholipase K04M1_26040 PF14814 Bifunctional transglycosylase second domain K04M1_26040 PF00905 Penicillin binding protein transpeptidase domain K04M1_26040 PF00912 Transglycosylase K04M1_26050 PF04408 Helicase associated domain (HA2) K04M1_26050 PF08482 ATP-dependent helicase C-terminal K04M1_26050 PF00270 DEAD/DEAH box helicase K04M1_26050 PF00271 Helicase conserved C-terminal domain K04M1_26060 PF17746 SfsA N-terminal OB domain K04M1_26060 PF03749 Sugar fermentation stimulation protein RE domain K04M1_26070 PF01258 Prokaryotic dksA/traR C4-type zinc finger K04M1_26080 PF00749 tRNA synthetases class I (E and Q), catalytic domain K04M1_26090 PF12626 Polymerase A arginine-rich C-terminus K04M1_26090 PF12627 Probable RNA and SrmB- binding site of polymerase A K04M1_26090 PF01743 Poly A polymerase head domain K04M1_26100 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K04M1_26110 PF02548 Ketopantoate hydroxymethyltransferase K04M1_26120 PF02569 Pantoate-beta-alanine ligase K04M1_26130 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M1_26140 PF01061 ABC-2 type transporter K04M1_26150 PF00005 ABC transporter K04M1_26160 PF00916 Sulfate permease family K04M1_26160 PF01740 STAS domain K04M1_26170 PF00484 Carbonic anhydrase K04M1_26180 PF00156 Phosphoribosyl transferase domain K04M1_26190 PF00440 Bacterial regulatory proteins, tetR family K04M1_26200 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_26200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M1_26210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K04M1_26210 PF02817 e3 binding domain K04M1_26210 PF00364 Biotin-requiring enzyme K04M1_26220 PF00456 Transketolase, thiamine diphosphate binding domain K04M1_26220 PF17831 Pyruvate dehydrogenase E1 component middle domain K04M1_26230 PF07729 FCD domain K04M1_26230 PF00392 Bacterial regulatory proteins, gntR family K04M1_26240 PF01510 N-acetylmuramoyl-L-alanine amidase K04M1_26250 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain K04M1_26250 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain K04M1_26260 PF07963 Prokaryotic N-terminal methylation motif K04M1_26260 PF00114 Pilin (bacterial filament) K04M1_26270 PF00437 Type II/IV secretion system protein K04M1_26270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K04M1_26280 PF00482 Type II secretion system (T2SS), protein F K04M1_26290 PF06750 Bacterial Peptidase A24 N-terminal domain K04M1_26290 PF01478 Type IV leader peptidase family K04M1_26300 PF01121 Dephospho-CoA kinase K04M1_26310 PF07072 Cell division protein K04M1_26320 PF03884 DNA gyrase inhibitor YacG K04M1_26330 PF01245 Ribosomal protein L19 K04M1_26340 PF01746 tRNA (Guanine-1)-methyltransferase K04M1_26350 PF05239 PRC-barrel domain K04M1_26350 PF01782 RimM N-terminal domain K04M1_26360 PF00886 Ribosomal protein S16 K04M1_26370 PF02978 Signal peptide binding domain K04M1_26370 PF02881 SRP54-type protein, helical bundle domain K04M1_26370 PF00448 SRP54-type protein, GTPase domain K04M1_26380 PF01578 Cytochrome C assembly protein K04M1_26390 PF01595 Cyclin M transmembrane N-terminal domain K04M1_26390 PF00571 CBS domain K04M1_26390 PF03471 Transporter associated domain K04M1_26400 PF02664 S-Ribosylhomocysteinase (LuxS) K04M1_26420 PF04262 Glutamate-cysteine ligase K04M1_26430 PF05193 Peptidase M16 inactive domain K04M1_26430 PF00675 Insulinase (Peptidase family M16) K04M1_26440 PF09335 SNARE associated Golgi protein K04M1_26460 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit K04M1_26470 PF02436 Conserved carboxylase domain K04M1_26470 PF00682 HMGL-like K04M1_26470 PF00364 Biotin-requiring enzyme K04M1_26480 PF04277 Oxaloacetate decarboxylase, gamma chain K04M1_26590 PF02599 Global regulator protein family K04M1_26600 PF00696 Amino acid kinase family K04M1_26600 PF01842 ACT domain K04M1_26600 PF13840 ACT domain K04M1_26610 PF01411 tRNA synthetases class II (A) K04M1_26610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K04M1_26610 PF02272 DHHA1 domain K04M1_26620 PF02631 RecX family K04M1_26630 PF00154 recA bacterial DNA recombination protein K04M1_26640 PF02464 Competence-damaged protein K04M1_26650 PF05190 MutS family domain IV K04M1_26650 PF05192 MutS domain III K04M1_26650 PF05188 MutS domain II K04M1_26650 PF00488 MutS domain V K04M1_26650 PF01624 MutS domain I K04M1_26660 PF04545 Sigma-70, region 4 K04M1_26660 PF04542 Sigma-70 region 2 K04M1_26660 PF00140 Sigma-70 factor, region 1.2 K04M1_26660 PF04539 Sigma-70 region 3 K04M1_26670 PF01551 Peptidase family M23 K04M1_26670 PF01476 LysM domain K04M1_26690 PF01975 Survival protein SurE K04M1_26700 PF01142 tRNA pseudouridine synthase D (TruD) K04M1_26710 PF02542 YgbB family K04M1_26720 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K04M1_26730 PF04977 Septum formation initiator K04M1_26740 PF00113 Enolase, C-terminal TIM barrel domain K04M1_26740 PF03952 Enolase, N-terminal domain K04M1_26750 PF06418 CTP synthase N-terminus K04M1_26750 PF00117 Glutamine amidotransferase class-I K04M1_26760 PF03819 MazG nucleotide pyrophosphohydrolase domain K04M1_26780 PF13291 ACT domain K04M1_26780 PF04607 Region found in RelA / SpoT proteins K04M1_26780 PF02824 TGS domain K04M1_26790 PF01938 TRAM domain K04M1_26790 PF05958 tRNA (Uracil-5-)-methyltransferase K04M1_26800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_26800 PF01627 Hpt domain K04M1_26800 PF00072 Response regulator receiver domain K04M1_26800 PF00512 His Kinase A (phospho-acceptor) domain K04M1_26800 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K04M1_26800 PF00672 HAMP domain K04M1_26810 PF01648 4'-phosphopantetheinyl transferase superfamily K04M1_26820 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ K04M1_26830 PF11967 Recombination protein O N terminal K04M1_26830 PF02565 Recombination protein O C terminal K04M1_26840 PF01926 50S ribosome-binding GTPase K04M1_26840 PF07650 KH domain K04M1_26850 PF14622 Ribonuclease-III-like K04M1_26850 PF00035 Double-stranded RNA binding motif K04M1_26860 PF10502 Signal peptidase, peptidase S26 K04M1_26870 PF00679 Elongation factor G C-terminus K04M1_26870 PF00009 Elongation factor Tu GTP binding domain K04M1_26870 PF06421 GTP-binding protein LepA C-terminus K04M1_26870 PF03144 Elongation factor Tu domain 2 K04M1_26890 PF17188 MucB/RseB C-terminal domain K04M1_26890 PF03888 MucB/RseB N-terminal domain K04M1_26900 PF03873 Anti sigma-E protein RseA, C-terminal domain K04M1_26900 PF03872 Anti sigma-E protein RseA, N-terminal domain K04M1_26910 PF08281 Sigma-70, region 4 K04M1_26910 PF04542 Sigma-70 region 2 K04M1_26920 PF00890 FAD binding domain K04M1_26920 PF02910 Fumarate reductase flavoprotein C-term K04M1_26940 PF03937 Flavinator of succinate dehydrogenase K04M1_26980 PF01494 FAD binding domain K04M1_26990 PF01494 FAD binding domain K04M1_27000 PF03695 Uncharacterised protein family (UPF0149) K04M1_27010 PF05164 Cell division protein ZapA K04M1_27020 PF01812 5-formyltetrahydrofolate cyclo-ligase family K04M1_27030 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) K04M1_27040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M1_27040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K04M1_27040 PF01842 ACT domain K04M1_27050 PF04402 Protein of unknown function (DUF541) K04M1_27060 PF03466 LysR substrate binding domain K04M1_27060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_27070 PF01810 LysE type translocator K04M1_27090 PF05552 Conserved TM helix K04M1_27090 PF00924 Mechanosensitive ion channel K04M1_27100 PF01116 Fructose-bisphosphate aldolase class-II K04M1_27110 PF00162 Phosphoglycerate kinase K04M1_27120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K04M1_27120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M1_27130 PF07715 TonB-dependent Receptor Plug Domain K04M1_27130 PF00593 TonB dependent receptor K04M1_27140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_27140 PF03466 LysR substrate binding domain K04M1_27150 PF00456 Transketolase, thiamine diphosphate binding domain K04M1_27150 PF02779 Transketolase, pyrimidine binding domain K04M1_27150 PF02780 Transketolase, C-terminal domain K04M1_27160 PF02773 S-adenosylmethionine synthetase, C-terminal domain K04M1_27160 PF02772 S-adenosylmethionine synthetase, central domain K04M1_27160 PF00438 S-adenosylmethionine synthetase, N-terminal domain K04M1_27180 PF10263 SprT-like family K04M1_27180 PF17283 SprT-like zinc ribbon domain K04M1_27190 PF04231 Endonuclease I K04M1_27200 PF04452 RNA methyltransferase K04M1_27210 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain K04M1_27210 PF02951 Prokaryotic glutathione synthetase, N-terminal domain K04M1_27220 PF02622 Uncharacterized ACR, COG1678 K04M1_27230 PF03652 Holliday junction resolvase K04M1_27240 PF00437 Type II/IV secretion system protein K04M1_27250 PF00437 Type II/IV secretion system protein K04M1_27260 PF01168 Alanine racemase, N-terminal domain K04M1_27270 PF03807 NADP oxidoreductase coenzyme F420-dependent K04M1_27270 PF14748 Pyrroline-5-carboxylate reductase dimerisation K04M1_27280 PF02325 YGGT family K04M1_27290 PF02594 Uncharacterised ACR, YggU family COG1872 K04M1_27310 PF01725 Ham1 family K04M1_27320 PF04055 Radical SAM superfamily K04M1_27320 PF06969 HemN C-terminal domain K04M1_27330 PF04960 Glutaminase K04M1_27340 PF02086 D12 class N6 adenine-specific DNA methyltransferase K04M1_27350 PF02390 Putative methyltransferase K04M1_27360 PF00633 Helix-hairpin-helix motif K04M1_27360 PF14815 NUDIX domain K04M1_27360 PF00730 HhH-GPD superfamily base excision DNA repair protein K04M1_27370 PF04362 Bacterial Fe(2+) trafficking K04M1_27380 PF01464 Transglycosylase SLT domain K04M1_27380 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain K04M1_27460 PF00672 HAMP domain K04M1_27460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_27460 PF17200 Single Cache domain 2 K04M1_27520 PF00171 Aldehyde dehydrogenase family K04M1_27630 PF04794 YdjC-like protein K04M1_27640 PF02056 Family 4 glycosyl hydrolase K04M1_27640 PF11975 Family 4 glycosyl hydrolase C-terminal domain K04M1_27650 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit K04M1_27660 PF02378 Phosphotransferase system, EIIC K04M1_27670 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K04M1_27680 PF01522 Polysaccharide deacetylase K04M1_27710 PF10011 Predicted membrane protein (DUF2254) K04M1_27730 PF03739 Lipopolysaccharide export system permease LptF/LptG K04M1_27740 PF03739 Lipopolysaccharide export system permease LptF/LptG K04M1_27750 PF02789 Cytosol aminopeptidase family, N-terminal domain K04M1_27750 PF00883 Cytosol aminopeptidase family, catalytic domain K04M1_27760 PF04364 DNA polymerase III chi subunit, HolC K04M1_27770 PF10458 Valyl tRNA synthetase tRNA binding arm K04M1_27770 PF00133 tRNA synthetases class I (I, L, M and V) K04M1_27770 PF08264 Anticodon-binding domain of tRNA K04M1_27790 PF00583 Acetyltransferase (GNAT) family K04M1_27810 PF06877 Regulator of ribonuclease activity B K04M1_27830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K04M1_27830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K04M1_27850 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K04M1_27850 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K04M1_27860 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain K04M1_27860 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain K04M1_27870 PF01042 Endoribonuclease L-PSP K04M1_27880 PF01553 Acyltransferase K04M1_27890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K04M1_27900 PF01722 BolA-like protein K04M1_27920 PF05494 MlaC protein K04M1_27930 PF02470 MlaD protein K04M1_27940 PF02405 Permease MlaE K04M1_27950 PF00005 ABC transporter K04M1_27960 PF01699 Sodium/calcium exchanger protein K04M1_27970 PF00571 CBS domain K04M1_27970 PF01380 SIS domain K04M1_27990 PF03968 OstA-like protein K04M1_28000 PF12399 Branched-chain amino acid ATP-binding cassette transporter K04M1_28000 PF00005 ABC transporter K04M1_28010 PF04552 Sigma-54, DNA binding domain K04M1_28010 PF04963 Sigma-54 factor, core binding domain K04M1_28010 PF00309 Sigma-54 factor, Activator interacting domain (AID) K04M1_28020 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K04M1_28030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K04M1_28040 PF03668 P-loop ATPase protein family K04M1_28050 PF00381 PTS HPr component phosphorylation site K04M1_28060 PF00571 CBS domain K04M1_28060 PF01769 Divalent cation transporter K04M1_28060 PF03448 MgtE intracellular N domain K04M1_28070 PF01523 Putative modulator of DNA gyrase K04M1_28080 PF04751 Protein of unknown function (DUF615) K04M1_28090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M1_28090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K04M1_28100 PF00849 RNA pseudouridylate synthase K04M1_28120 PF18339 RapA N-terminal Tudor like domain 1 K04M1_28120 PF18337 RapA N-terminal Tudor like domain K04M1_28120 PF00271 Helicase conserved C-terminal domain K04M1_28120 PF00176 SNF2 family N-terminal domain K04M1_28120 PF12137 RNA polymerase recycling family C-terminal K04M1_28130 PF13638 PIN domain K04M1_28130 PF02562 PhoH-like protein K04M1_28140 PF01523 Putative modulator of DNA gyrase K04M1_28150 PF00795 Carbon-nitrogen hydrolase K04M1_28160 PF13116 Protein of unknown function K04M1_28160 PF13502 AsmA-like C-terminal region K04M1_28170 PF00575 S1 RNA binding domain K04M1_28170 PF10150 Ribonuclease E/G family K04M1_28180 PF02545 Maf-like protein K04M1_28190 PF04093 rod shape-determining protein MreD K04M1_28200 PF04085 rod shape-determining protein MreC K04M1_28280 PF07963 Prokaryotic N-terminal methylation motif K04M1_28280 PF08334 Type II secretion system (T2SS), protein G K04M1_28300 PF00482 Type II secretion system (T2SS), protein F K04M1_28310 PF00437 Type II/IV secretion system protein K04M1_28330 PF13401 AAA domain K04M1_28330 PF01471 Putative peptidoglycan binding domain K04M1_28340 PF00263 Bacterial type II and III secretion system protein K04M1_28340 PF03958 Bacterial type II/III secretion system short domain K04M1_28380 PF00563 EAL domain K04M1_28380 PF17157 Gammaproteobacterial periplasmic sensor domain K04M1_28380 PF00990 Diguanylate cyclase, GGDEF domain K04M1_28390 PF00436 Single-strand binding protein family K04M1_28400 PF00196 Bacterial regulatory proteins, luxR family K04M1_28410 PF00483 Nucleotidyl transferase K04M1_28420 PF17760 UvrA interaction domain K04M1_28420 PF17755 UvrA DNA-binding domain K04M1_28420 PF00005 ABC transporter K04M1_28460 PF00266 Aminotransferase class-V K04M1_28470 PF01842 ACT domain K04M1_28470 PF00696 Amino acid kinase family K04M1_28480 PF02310 B12 binding domain K04M1_28480 PF00809 Pterin binding enzyme K04M1_28480 PF02965 Vitamin B12 dependent methionine synthase, activation domain K04M1_28480 PF02607 B12 binding domain K04M1_28480 PF02574 Homocysteine S-methyltransferase K04M1_28490 PF00999 Sodium/hydrogen exchanger family K04M1_28610 PF01507 Phosphoadenosine phosphosulfate reductase family K04M1_28620 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K04M1_28620 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K04M1_28630 PF00258 Flavodoxin K04M1_28630 PF00667 FAD binding domain K04M1_28630 PF00175 Oxidoreductase NAD-binding domain K04M1_28670 PF01207 Dihydrouridine synthase (Dus) K04M1_28680 PF01475 Ferric uptake regulator family K04M1_28700 PF00342 Phosphoglucose isomerase K04M1_28710 PF01894 Uncharacterised protein family UPF0047 K04M1_28720 PF00842 Alanine racemase, C-terminal domain K04M1_28720 PF01168 Alanine racemase, N-terminal domain K04M1_28730 PF00772 DnaB-like helicase N terminal domain K04M1_28730 PF03796 DnaB-like helicase C terminal domain K04M1_28750 PF03948 Ribosomal protein L9, C-terminal domain K04M1_28750 PF01281 Ribosomal protein L9, N-terminal domain K04M1_28760 PF01084 Ribosomal protein S18 K04M1_28770 PF00436 Single-strand binding protein family K04M1_28780 PF01250 Ribosomal protein S6 K04M1_28790 PF00834 Ribulose-phosphate 3 epimerase family K04M1_28800 PF02086 D12 class N6 adenine-specific DNA methyltransferase K04M1_28820 PF01761 3-dehydroquinate synthase K04M1_28830 PF01202 Shikimate kinase K04M1_28840 PF03958 Bacterial type II/III secretion system short domain K04M1_28840 PF11741 AMIN domain K04M1_28840 PF07660 Secretin and TonB N terminus short domain K04M1_28840 PF00263 Bacterial type II and III secretion system protein K04M1_28890 PF00905 Penicillin binding protein transpeptidase domain K04M1_28890 PF00912 Transglycosylase K04M1_28890 PF17092 Penicillin-binding protein OB-like domain K04M1_28900 PF03466 LysR substrate binding domain K04M1_28900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_28910 PF08534 Redoxin K04M1_28910 PF00462 Glutaredoxin K04M1_28920 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_28920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M1_28950 PF00206 Lyase K04M1_28950 PF14698 Argininosuccinate lyase C-terminal K04M1_28950 PF00583 Acetyltransferase (GNAT) family K04M1_28960 PF00764 Arginosuccinate synthase K04M1_28970 PF00696 Amino acid kinase family K04M1_28980 PF01118 Semialdehyde dehydrogenase, NAD binding domain K04M1_28980 PF02774 Semialdehyde dehydrogenase, dimerisation domain K04M1_28990 PF07687 Peptidase dimerisation domain K04M1_28990 PF01546 Peptidase family M20/M25/M40 K04M1_29000 PF00311 Phosphoenolpyruvate carboxylase K04M1_29020 PF02219 Methylenetetrahydrofolate reductase K04M1_29030 PF00742 Homoserine dehydrogenase K04M1_29030 PF00696 Amino acid kinase family K04M1_29030 PF03447 Homoserine dehydrogenase, NAD binding domain K04M1_29040 PF01053 Cys/Met metabolism PLP-dependent enzyme K04M1_29060 PF00390 Malic enzyme, N-terminal domain K04M1_29060 PF03949 Malic enzyme, NAD binding domain K04M1_29070 PF00210 Ferritin-like domain K04M1_29080 PF04324 BFD-like [2Fe-2S] binding domain K04M1_29090 PF00009 Elongation factor Tu GTP binding domain K04M1_29090 PF03144 Elongation factor Tu domain 2 K04M1_29090 PF03143 Elongation factor Tu C-terminal domain K04M1_29100 PF03144 Elongation factor Tu domain 2 K04M1_29100 PF00009 Elongation factor Tu GTP binding domain K04M1_29100 PF03764 Elongation factor G, domain IV K04M1_29100 PF14492 Elongation Factor G, domain II K04M1_29100 PF00679 Elongation factor G C-terminus K04M1_29110 PF00177 Ribosomal protein S7p/S5e K04M1_29120 PF00164 Ribosomal protein S12/S23 K04M1_29130 PF04077 DsrH like protein K04M1_29140 PF02635 DsrE/DsrF-like family K04M1_29150 PF02635 DsrE/DsrF-like family K04M1_29160 PF13309 HTH domain K04M1_29160 PF08348 YheO-like PAS domain K04M1_29170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K04M1_29170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M1_29190 PF04102 SlyX K04M1_29200 PF01112 Asparaginase K04M1_29210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M1_29230 PF02254 TrkA-N domain K04M1_29230 PF00999 Sodium/hydrogen exchanger family K04M1_29240 PF02525 Flavodoxin-like fold K04M1_29250 PF12848 ABC transporter K04M1_29250 PF00005 ABC transporter K04M1_29270 PF00561 alpha/beta hydrolase fold K04M1_29280 PF06794 Uncharacterised protein family (UPF0270) K04M1_29290 PF00485 Phosphoribulokinase / Uridine kinase family K04M1_29300 PF00027 Cyclic nucleotide-binding domain K04M1_29300 PF13545 Crp-like helix-turn-helix domain K04M1_29320 PF00171 Aldehyde dehydrogenase family K04M1_29330 PF04958 Arginine N-succinyltransferase beta subunit K04M1_29340 PF00202 Aminotransferase class-III K04M1_29350 PF00117 Glutamine amidotransferase class-I K04M1_29380 PF00579 tRNA synthetases class I (W and Y) K04M1_29390 PF13419 Haloacid dehalogenase-like hydrolase K04M1_29400 PF08032 RNA 2'-O ribose methyltransferase substrate binding K04M1_29400 PF00588 SpoU rRNA Methylase family K04M1_29410 PF00575 S1 RNA binding domain K04M1_29410 PF17876 Cold shock domain K04M1_29410 PF08461 Ribonuclease R winged-helix domain K04M1_29410 PF08206 Ribonuclease B OB domain K04M1_29410 PF00773 RNB domain K04M1_29420 PF02082 Transcriptional regulator K04M1_29430 PF00970 Oxidoreductase FAD-binding domain K04M1_29430 PF00042 Globin K04M1_29430 PF00175 Oxidoreductase NAD-binding domain K04M1_29440 PF08238 Sel1 repeat K04M1_29450 PF00709 Adenylosuccinate synthetase K04M1_29460 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) K04M1_29470 PF01145 SPFH domain / Band 7 family K04M1_29480 PF12221 Bacterial membrane protein N terminal K04M1_29480 PF01145 SPFH domain / Band 7 family K04M1_29490 PF16360 GTP-binding GTPase Middle Region K04M1_29490 PF13167 GTP-binding GTPase N-terminal K04M1_29490 PF01926 50S ribosome-binding GTPase K04M1_29500 PF17209 Hfq protein K04M1_29520 PF01119 DNA mismatch repair protein, C-terminal domain K04M1_29520 PF08676 MutL C terminal dimerisation domain K04M1_29530 PF01520 N-acetylmuramoyl-L-alanine amidase K04M1_29540 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE K04M1_29560 PF08331 Domain of unknown function (DUF1730) K04M1_29690 PF00929 Exonuclease K04M1_29700 PF03193 RsgA GTPase K04M1_29710 PF02666 Phosphatidylserine decarboxylase K04M1_29720 PF00939 Sodium:sulfate symporter transmembrane region K04M1_29740 PF01676 Metalloenzyme superfamily K04M1_29740 PF06415 BPG-independent PGAM N-terminus (iPGM_N) K04M1_29750 PF00581 Rhodanese-like domain K04M1_29760 PF02556 Preprotein translocase subunit SecB K04M1_29770 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K04M1_29770 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K04M1_29780 PF06426 Serine acetyltransferase, N-terminal K04M1_29780 PF00132 Bacterial transferase hexapeptide (six repeats) K04M1_29790 PF01551 Peptidase family M23 K04M1_29810 PF08360 QacR-like protein, C-terminal region K04M1_29810 PF00440 Bacterial regulatory proteins, tetR family K04M1_29830 PF00152 tRNA synthetases class II (D, K and N) K04M1_29840 PF00890 FAD binding domain K04M1_29840 PF02910 Fumarate reductase flavoprotein C-term K04M1_29850 PF13183 4Fe-4S dicluster domain K04M1_29850 PF13085 2Fe-2S iron-sulfur cluster binding domain K04M1_29860 PF02300 Fumarate reductase subunit C K04M1_29870 PF02313 Fumarate reductase subunit D K04M1_29890 PF01132 Elongation factor P (EF-P) OB domain K04M1_29890 PF08207 Elongation factor P (EF-P) KOW-like domain K04M1_29890 PF09285 Elongation factor P, C-terminal K04M1_29900 PF04055 Radical SAM superfamily K04M1_29910 PF02308 MgtC family K04M1_29930 PF00118 TCP-1/cpn60 chaperonin family K04M1_29940 PF00166 Chaperonin 10 Kd subunit K04M1_29950 PF01554 MatE K04M1_29960 PF00365 Phosphofructokinase K04M1_29970 PF16916 Dimerisation domain of Zinc Transporter K04M1_29970 PF01545 Cation efflux family K04M1_29980 PF07813 LTXXQ motif family protein K04M1_29990 PF00486 Transcriptional regulatory protein, C terminal K04M1_29990 PF00072 Response regulator receiver domain K04M1_30000 PF00672 HAMP domain K04M1_30000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_30000 PF00512 His Kinase A (phospho-acceptor) domain K04M1_30000 PF16527 Two-component sensor protein CpxA, periplasmic domain K04M1_30010 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K04M1_30010 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K04M1_30020 PF00588 SpoU rRNA Methylase family K04M1_30030 PF04186 FxsA cytoplasmic membrane protein K04M1_30040 PF10415 Fumarase C C-terminus K04M1_30040 PF00206 Lyase K04M1_30050 PF03605 Anaerobic c4-dicarboxylate membrane transporter K04M1_30060 PF11412 Disulphide bond corrector protein DsbC K04M1_30060 PF02683 Cytochrome C biogenesis protein transmembrane region K04M1_30070 PF00196 Bacterial regulatory proteins, luxR family K04M1_30070 PF00072 Response regulator receiver domain K04M1_30080 PF00999 Sodium/hydrogen exchanger family K04M1_30080 PF03471 Transporter associated domain K04M1_30080 PF02080 TrkA-C domain K04M1_30100 PF00474 Sodium:solute symporter family K04M1_30130 PF00206 Lyase K04M1_30130 PF10415 Fumarase C C-terminus K04M1_30140 PF00072 Response regulator receiver domain K04M1_30140 PF09308 LuxQ, periplasmic K04M1_30140 PF00512 His Kinase A (phospho-acceptor) domain K04M1_30140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_30150 PF12832 MFS_1 like family K04M1_30180 PF16177 Acetyl-coenzyme A synthetase N-terminus K04M1_30180 PF00501 AMP-binding enzyme K04M1_30180 PF13193 AMP-binding enzyme C-terminal domain K04M1_30190 PF01220 Dehydroquinase class II K04M1_30200 PF00364 Biotin-requiring enzyme K04M1_30210 PF02785 Biotin carboxylase C-terminal domain K04M1_30210 PF00289 Biotin carboxylase, N-terminal domain K04M1_30210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K04M1_30230 PF01207 Dihydrouridine synthase (Dus) K04M1_30240 PF02954 Bacterial regulatory protein, Fis family K04M1_30260 PF00005 ABC transporter K04M1_30260 PF12848 ABC transporter K04M1_30360 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain K04M1_30360 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain K04M1_30360 PF01276 Orn/Lys/Arg decarboxylase, major domain K04M1_30370 PF13520 Amino acid permease K04M1_30380 PF00486 Transcriptional regulatory protein, C terminal K04M1_30380 PF18500 CadC C-terminal domain 1 K04M1_30390 PF13411 MerR HTH family regulatory protein K04M1_30400 PF02142 MGS-like domain K04M1_30400 PF01808 AICARFT/IMPCHase bienzyme K04M1_30410 PF02844 Phosphoribosylglycinamide synthetase, N domain K04M1_30410 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K04M1_30410 PF02843 Phosphoribosylglycinamide synthetase, C domain K04M1_30430 PF00216 Bacterial DNA-binding protein K04M1_30440 PF00571 CBS domain K04M1_30440 PF01595 Cyclin M transmembrane N-terminal domain K04M1_30450 PF04222 Protein of unknown function (DUF416) K04M1_30460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M1_30470 PF03167 Uracil DNA glycosylase superfamily K04M1_30480 PF01208 Uroporphyrinogen decarboxylase (URO-D) K04M1_30490 PF09297 NADH pyrophosphatase zinc ribbon domain K04M1_30490 PF00293 NUDIX domain K04M1_30500 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ K04M1_30510 PF05000 RNA polymerase Rpb1, domain 4 K04M1_30510 PF04997 RNA polymerase Rpb1, domain 1 K04M1_30510 PF04983 RNA polymerase Rpb1, domain 3 K04M1_30510 PF04998 RNA polymerase Rpb1, domain 5 K04M1_30510 PF00623 RNA polymerase Rpb1, domain 2 K04M1_30520 PF10385 RNA polymerase beta subunit external 1 domain K04M1_30520 PF04565 RNA polymerase Rpb2, domain 3 K04M1_30520 PF04561 RNA polymerase Rpb2, domain 2 K04M1_30520 PF04563 RNA polymerase beta subunit K04M1_30520 PF00562 RNA polymerase Rpb2, domain 6 K04M1_30520 PF04560 RNA polymerase Rpb2, domain 7 K04M1_30530 PF00542 Ribosomal protein L7/L12 C-terminal domain K04M1_30530 PF16320 Ribosomal protein L7/L12 dimerisation domain K04M1_30540 PF00466 Ribosomal protein L10 K04M1_30550 PF00687 Ribosomal protein L1p/L10e family K04M1_30560 PF03946 Ribosomal protein L11, N-terminal domain K04M1_30560 PF00298 Ribosomal protein L11, RNA binding domain K04M1_30570 PF00467 KOW motif K04M1_30570 PF02357 Transcription termination factor nusG K04M1_30580 PF00584 SecE/Sec61-gamma subunits of protein translocation complex K04M1_30590 PF03143 Elongation factor Tu C-terminal domain K04M1_30590 PF00009 Elongation factor Tu GTP binding domain K04M1_30590 PF03144 Elongation factor Tu domain 2 K04M1_30640 PF00485 Phosphoribulokinase / Uridine kinase family K04M1_30650 PF02237 Biotin protein ligase C terminal domain K04M1_30650 PF08279 HTH domain K04M1_30650 PF03099 Biotin/lipoate A/B protein ligase family K04M1_30660 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K04M1_30660 PF01565 FAD binding domain K04M1_30680 PF13091 PLD-like domain K04M1_30830 PF01177 Asp/Glu/Hydantoin racemase K04M1_30850 PF00593 TonB dependent receptor K04M1_30850 PF07715 TonB-dependent Receptor Plug Domain K04M1_30860 PF05958 tRNA (Uracil-5-)-methyltransferase K04M1_30880 PF00440 Bacterial regulatory proteins, tetR family K04M1_30890 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_30890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M1_30900 PF01554 MatE K04M1_30910 PF04072 Leucine carboxyl methyltransferase K04M1_30920 PF01726 LexA DNA binding domain K04M1_30920 PF00717 Peptidase S24-like K04M1_30930 PF01553 Acyltransferase K04M1_30940 PF01040 UbiA prenyltransferase family K04M1_30950 PF04345 Chorismate lyase K04M1_30960 PF03748 Flagellar basal body-associated protein FliL K04M1_30970 PF01694 Rhomboid family K04M1_30970 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease K04M1_30980 PF00581 Rhodanese-like domain K04M1_30990 PF04542 Sigma-70 region 2 K04M1_30990 PF04545 Sigma-70, region 4 K04M1_30990 PF00140 Sigma-70 factor, region 1.2 K04M1_31000 PF18075 FtsX extracellular domain K04M1_31010 PF00005 ABC transporter K04M1_31020 PF02881 SRP54-type protein, helical bundle domain K04M1_31020 PF00448 SRP54-type protein, GTPase domain K04M1_31050 PF01914 MarC family integral membrane protein K04M1_31090 PF10694 Protein of unknown function (DUF2500) K04M1_31130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K04M1_31130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M1_31140 PF01022 Bacterial regulatory protein, arsR family K04M1_31150 PF08668 HDOD domain K04M1_31150 PF00563 EAL domain K04M1_31160 PF01810 LysE type translocator K04M1_31170 PF12146 Serine aminopeptidase, S33 K04M1_31220 PF00990 Diguanylate cyclase, GGDEF domain K04M1_31220 PF10442 FIST C domain K04M1_31220 PF08495 FIST N domain K04M1_31220 PF00563 EAL domain K04M1_31230 PF13419 Haloacid dehalogenase-like hydrolase K04M1_31240 PF02899 Phage integrase, N-terminal SAM-like domain K04M1_31240 PF00589 Phage integrase family K04M1_31260 PF01678 Diaminopimelate epimerase K04M1_31270 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K04M1_31270 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K04M1_31280 PF01491 Frataxin-like domain K04M1_31290 PF01295 Adenylate cyclase, class-I K04M1_31290 PF12633 Adenylate cyclase NT domain K04M1_31300 PF03900 Porphobilinogen deaminase, C-terminal domain K04M1_31300 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain K04M1_31310 PF02602 Uroporphyrinogen-III synthase HemD K04M1_31320 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase K04M1_31330 PF07219 HemY protein N-terminus K04M1_31410 PF00175 Oxidoreductase NAD-binding domain K04M1_31420 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M1_31430 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K04M1_31450 PF07497 Rho termination factor, RNA-binding domain K04M1_31450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M1_31450 PF07498 Rho termination factor, N-terminal domain K04M1_31460 PF00085 Thioredoxin K04M1_31470 PF00270 DEAD/DEAH box helicase K04M1_31470 PF00271 Helicase conserved C-terminal domain K04M1_31480 PF02541 Ppx/GppA phosphatase family K04M1_31500 PF02592 Putative vitamin uptake transporter K04M1_31520 PF09382 RQC domain K04M1_31520 PF00570 HRDC domain K04M1_31520 PF16124 RecQ zinc-binding K04M1_31520 PF00270 DEAD/DEAH box helicase K04M1_31520 PF00271 Helicase conserved C-terminal domain K04M1_31530 PF00892 EamA-like transporter family K04M1_31550 PF01810 LysE type translocator K04M1_31570 PF00580 UvrD/REP helicase N-terminal domain K04M1_31570 PF13361 UvrD-like helicase C-terminal domain K04M1_31590 PF05114 Protein of unknown function (DUF692) K04M1_31630 PF07690 Major Facilitator Superfamily K04M1_31640 PF03466 LysR substrate binding domain K04M1_31640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_31650 PF01321 Creatinase/Prolidase N-terminal domain K04M1_31650 PF00557 Metallopeptidase family M24 K04M1_31650 PF01321 Creatinase/Prolidase N-terminal domain K04M1_31650 PF00557 Metallopeptidase family M24 K04M1_31660 PF06968 Biotin and Thiamin Synthesis associated domain K04M1_31660 PF04055 Radical SAM superfamily K04M1_31670 PF05690 Thiazole biosynthesis protein ThiG K04M1_31680 PF02597 ThiS family K04M1_31690 PF00899 ThiF family K04M1_31700 PF02581 Thiamine monophosphate synthase K04M1_31710 PF13667 ThiC-associated domain K04M1_31710 PF01964 Radical SAM ThiC family K04M1_31720 PF02537 CrcB-like protein, Camphor Resistance (CrcB) K04M1_31730 PF07731 Multicopper oxidase K04M1_31730 PF07732 Multicopper oxidase K04M1_31730 PF00394 Multicopper oxidase K04M1_31830 PF00132 Bacterial transferase hexapeptide (six repeats) K04M1_31840 PF07369 Protein of unknown function (DUF1488) K04M1_31850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain K04M1_31850 PF01488 Shikimate / quinate 5-dehydrogenase K04M1_31850 PF08501 Shikimate dehydrogenase substrate binding domain K04M1_31860 PF01218 Coproporphyrinogen III oxidase K04M1_31870 PF01300 Telomere recombination K04M1_31880 PF00731 AIR carboxylase K04M1_31890 PF02222 ATP-grasp domain K04M1_31890 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain K04M1_31900 PF01396 Topoisomerase DNA binding C4 zinc finger K04M1_31910 PF04361 Protein of unknown function (DUF494) K04M1_31920 PF02481 DNA recombination-mediator protein A K04M1_31920 PF17782 DprA winged helix domain K04M1_31940 PF01327 Polypeptide deformylase K04M1_31950 PF00551 Formyl transferase K04M1_31950 PF02911 Formyl transferase, C-terminal domain K04M1_31960 PF01189 16S rRNA methyltransferase RsmB/F K04M1_31960 PF01029 NusB family K04M1_31970 PF02080 TrkA-C domain K04M1_31970 PF02254 TrkA-N domain K04M1_31980 PF02386 Cation transport protein K04M1_32000 PF03006 Haemolysin-III related K04M1_32010 PF07070 SpoOM protein K04M1_32030 PF06288 Protein of unknown function (DUF1040) K04M1_32040 PF12801 4Fe-4S binding domain K04M1_32040 PF13746 4Fe-4S dicluster domain K04M1_32040 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase K04M1_32050 PF01636 Phosphotransferase enzyme family K04M1_32060 PF01323 DSBA-like thioredoxin domain K04M1_32070 PF01553 Acyltransferase K04M1_32090 PF01078 Magnesium chelatase, subunit ChlI K04M1_32090 PF13335 Magnesium chelatase, subunit ChlI C-terminal K04M1_32100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K04M1_32100 PF00205 Thiamine pyrophosphate enzyme, central domain K04M1_32100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K04M1_32120 PF01063 Amino-transferase class IV K04M1_32130 PF00920 Dehydratase family K04M1_32140 PF00585 C-terminal regulatory domain of Threonine dehydratase K04M1_32140 PF00291 Pyridoxal-phosphate dependent enzyme K04M1_32150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_32150 PF03466 LysR substrate binding domain K04M1_32160 PF07690 Major Facilitator Superfamily K04M1_32170 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_32180 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_32190 PF12804 MobA-like NTP transferase domain K04M1_32190 PF00132 Bacterial transferase hexapeptide (six repeats) K04M1_32210 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain K04M1_32210 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain K04M1_32220 PF02874 ATP synthase alpha/beta family, beta-barrel domain K04M1_32220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M1_32230 PF00231 ATP synthase K04M1_32240 PF00306 ATP synthase alpha/beta chain, C terminal domain K04M1_32240 PF02874 ATP synthase alpha/beta family, beta-barrel domain K04M1_32240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M1_32250 PF00213 ATP synthase delta (OSCP) subunit K04M1_32260 PF00430 ATP synthase B/B' CF(0) K04M1_32270 PF00137 ATP synthase subunit C K04M1_32280 PF00119 ATP synthase A chain K04M1_32290 PF03899 ATP synthase I chain K04M1_32300 PF17762 HTH domain found in ParB protein K04M1_32300 PF02195 ParB-like nuclease domain K04M1_32310 PF13614 AAA domain K04M1_32320 PF02527 rRNA small subunit methyltransferase G K04M1_32330 PF01134 Glucose inhibited division protein A K04M1_32330 PF13932 GidA associated domain K04M1_32340 PF00258 Flavodoxin K04M1_32350 PF12631 MnmE helical domain K04M1_32350 PF10396 GTP-binding protein TrmE N-terminus K04M1_32350 PF01926 50S ribosome-binding GTPase K04M1_32360 PF14849 YidC periplasmic domain K04M1_32360 PF02096 60Kd inner membrane protein K04M1_32370 PF00825 Ribonuclease P K04M1_32380 PF00468 Ribosomal protein L34 K04M1_32390 PF00005 ABC transporter K04M1_32400 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_32410 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_32420 PF13614 AAA domain K04M1_32420 PF18607 ParA helix turn helix domain K04M1_32430 PF08775 ParB family K04M1_32430 PF02195 ParB-like nuclease domain K04M1_32440 PF13718 GNAT acetyltransferase 2 K04M1_32440 PF05127 Helicase K04M1_32460 PF00132 Bacterial transferase hexapeptide (six repeats) K04M1_32470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_32470 PF03466 LysR substrate binding domain K04M1_32480 PF03575 Peptidase family S51 K04M1_32490 PF00267 Gram-negative porin K04M1_32500 PF00367 phosphotransferase system, EIIB K04M1_32500 PF02378 Phosphotransferase system, EIIC K04M1_32510 PF01380 SIS domain K04M1_32520 PF01418 Helix-turn-helix domain, rpiR family K04M1_32520 PF01380 SIS domain K04M1_32530 PF00246 Zinc carboxypeptidase K04M1_32540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_32550 PF03358 NADPH-dependent FMN reductase K04M1_32580 PF00005 ABC transporter K04M1_32580 PF00664 ABC transporter transmembrane region K04M1_32580 PF03412 Peptidase C39 family K04M1_32610 PF00529 HlyD membrane-fusion protein of T1SS K04M1_32620 PF02954 Bacterial regulatory protein, Fis family K04M1_32620 PF00158 Sigma-54 interaction domain K04M1_32620 PF00072 Response regulator receiver domain K04M1_32630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_32630 PF02743 Cache domain K04M1_32630 PF00512 His Kinase A (phospho-acceptor) domain K04M1_32640 PF01243 Pyridoxamine 5'-phosphate oxidase K04M1_32640 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region K04M1_32660 PF12833 Helix-turn-helix domain K04M1_32670 PF00171 Aldehyde dehydrogenase family K04M1_32670 PF01619 Proline dehydrogenase K04M1_32670 PF14850 DNA-binding domain of Proline dehydrogenase K04M1_32670 PF18327 Proline utilization A proline dehydrogenase N-terminal domain K04M1_32690 PF00474 Sodium:solute symporter family K04M1_32750 PF01037 Lrp/AsnC ligand binding domain K04M1_32770 PF00664 ABC transporter transmembrane region K04M1_32770 PF00005 ABC transporter K04M1_32790 PF00271 Helicase conserved C-terminal domain K04M1_32790 PF00270 DEAD/DEAH box helicase K04M1_32800 PF03475 3-alpha domain K04M1_32800 PF03473 MOSC domain K04M1_32840 PF04542 Sigma-70 region 2 K04M1_32840 PF08281 Sigma-70, region 4 K04M1_32850 PF01965 DJ-1/PfpI family K04M1_32850 PF12833 Helix-turn-helix domain K04M1_32860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_32860 PF03466 LysR substrate binding domain K04M1_32890 PF13192 Thioredoxin domain K04M1_32890 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_32900 PF00578 AhpC/TSA family K04M1_32900 PF10417 C-terminal domain of 1-Cys peroxiredoxin K04M1_32980 PF01047 MarR family K04M1_32990 PF02566 OsmC-like protein K04M1_33010 PF12833 Helix-turn-helix domain K04M1_33070 PF00005 ABC transporter K04M1_33110 PF00367 phosphotransferase system, EIIB K04M1_33110 PF02378 Phosphotransferase system, EIIC K04M1_33120 PF00072 Response regulator receiver domain K04M1_33120 PF00486 Transcriptional regulatory protein, C terminal K04M1_33130 PF00512 His Kinase A (phospho-acceptor) domain K04M1_33130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_33130 PF08521 Two-component sensor kinase N-terminal K04M1_33140 PF01547 Bacterial extracellular solute-binding protein K04M1_33150 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K04M1_33150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K04M1_33160 PF06276 Ferric iron reductase FhuF-like transporter K04M1_33160 PF04183 IucA / IucC family K04M1_33180 PF04183 IucA / IucC family K04M1_33180 PF06276 Ferric iron reductase FhuF-like transporter K04M1_33190 PF02655 ATP-grasp domain K04M1_33190 PF00206 Lyase K04M1_33200 PF07715 TonB-dependent Receptor Plug Domain K04M1_33200 PF00593 TonB dependent receptor K04M1_33210 PF00593 TonB dependent receptor K04M1_33210 PF07660 Secretin and TonB N terminus short domain K04M1_33210 PF07715 TonB-dependent Receptor Plug Domain K04M1_33220 PF01497 Periplasmic binding protein K04M1_33230 PF01032 FecCD transport family K04M1_33240 PF01032 FecCD transport family K04M1_33250 PF00005 ABC transporter K04M1_33260 PF17200 Single Cache domain 2 K04M1_33260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_33260 PF00672 HAMP domain K04M1_33270 PF05193 Peptidase M16 inactive domain K04M1_33270 PF00675 Insulinase (Peptidase family M16) K04M1_33290 PF01551 Peptidase family M23 K04M1_33290 PF04225 Opacity-associated protein A LysM-like domain K04M1_33320 PF07690 Major Facilitator Superfamily K04M1_33330 PF02796 Helix-turn-helix domain of resolvase K04M1_33330 PF00239 Resolvase, N terminal domain K04M1_33340 PF00356 Bacterial regulatory proteins, lacI family K04M1_33350 PF00474 Sodium:solute symporter family K04M1_33380 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K04M1_33400 PF03480 Bacterial extracellular solute-binding protein, family 7 K04M1_33410 PF00356 Bacterial regulatory proteins, lacI family K04M1_33420 PF03328 HpcH/HpaI aldolase/citrate lyase family K04M1_33460 PF00561 alpha/beta hydrolase fold K04M1_33490 PF07690 Major Facilitator Superfamily K04M1_33500 PF00474 Sodium:solute symporter family K04M1_33510 PF03315 Serine dehydratase beta chain K04M1_33510 PF03313 Serine dehydratase alpha chain K04M1_33520 PF00128 Alpha amylase, catalytic domain K04M1_33520 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K04M1_33530 PF02264 LamB porin K04M1_33560 PF16657 Maltogenic Amylase, C-terminal domain K04M1_33560 PF02903 Alpha amylase, N-terminal ig-like domain K04M1_33560 PF00128 Alpha amylase, catalytic domain K04M1_33570 PF04231 Endonuclease I K04M1_33580 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K04M1_33580 PF11852 Domain of unknown function (DUF3372) K04M1_33580 PF03714 Bacterial pullanase-associated domain K04M1_33580 PF18494 Pullulanase Ins domain K04M1_33580 PF17967 Pullulanase N2 domain K04M1_33610 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain K04M1_33610 PF01276 Orn/Lys/Arg decarboxylase, major domain K04M1_33610 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain K04M1_33620 PF13520 Amino acid permease K04M1_33640 PF08543 Phosphomethylpyrimidine kinase K04M1_33650 PF00375 Sodium:dicarboxylate symporter family K04M1_33660 PF03193 RsgA GTPase K04M1_33670 PF00367 phosphotransferase system, EIIB K04M1_33670 PF02378 Phosphotransferase system, EIIC K04M1_33680 PF02630 SCO1/SenC K04M1_33710 PF00196 Bacterial regulatory proteins, luxR family K04M1_33710 PF17874 MalT-like TPR region K04M1_33720 PF00343 Carbohydrate phosphorylase K04M1_33730 PF02446 4-alpha-glucanotransferase K04M1_33740 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K04M1_33740 PF02806 Alpha amylase, C-terminal all-beta domain K04M1_33740 PF00128 Alpha amylase, catalytic domain K04M1_33750 PF00912 Transglycosylase K04M1_33760 PF00128 Alpha amylase, catalytic domain K04M1_33780 PF07670 Nucleoside recognition K04M1_33790 PF07670 Nucleoside recognition K04M1_33800 PF01546 Peptidase family M20/M25/M40 K04M1_33800 PF07687 Peptidase dimerisation domain K04M1_33810 PF06803 Protein of unknown function (DUF1232) K04M1_33820 PF00375 Sodium:dicarboxylate symporter family K04M1_33840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_33840 PF03466 LysR substrate binding domain K04M1_33850 PF08803 Putative mono-oxygenase ydhR K04M1_33870 PF02706 Chain length determinant protein K04M1_33870 PF13807 G-rich domain on putative tyrosine kinase K04M1_33870 PF13614 AAA domain K04M1_33880 PF01451 Low molecular weight phosphotyrosine protein phosphatase K04M1_33890 PF18412 Outer-membrane lipoprotein Wza C-terminal domain K04M1_33890 PF10531 SLBB domain K04M1_33890 PF02563 Polysaccharide biosynthesis/export protein K04M1_33910 PF00881 Nitroreductase family K04M1_33920 PF01914 MarC family integral membrane protein K04M1_33930 PF01734 Patatin-like phospholipase K04M1_33940 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading K04M1_33940 PF18416 N-acetylglucosamine binding protein domain 2 K04M1_33950 PF02469 Fasciclin domain K04M1_33960 PF00875 DNA photolyase K04M1_33960 PF03441 FAD binding domain of DNA photolyase K04M1_33990 PF00561 alpha/beta hydrolase fold K04M1_34000 PF00768 D-alanyl-D-alanine carboxypeptidase K04M1_34000 PF07943 Penicillin-binding protein 5, C-terminal domain K04M1_34010 PF00686 Starch binding domain K04M1_34010 PF00128 Alpha amylase, catalytic domain K04M1_34020 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term K04M1_34020 PF12833 Helix-turn-helix domain K04M1_34030 PF00881 Nitroreductase family K04M1_34050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_34050 PF03466 LysR substrate binding domain K04M1_34060 PF09905 DNA-binding protein VF530 K04M1_34090 PF00175 Oxidoreductase NAD-binding domain K04M1_34090 PF00970 Oxidoreductase FAD-binding domain K04M1_34110 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K04M1_34120 PF01594 AI-2E family transporter K04M1_34140 PF13533 Biotin-lipoyl like K04M1_34170 PF04632 Fusaric acid resistance protein family K04M1_34180 PF00892 EamA-like transporter family K04M1_34190 PF03466 LysR substrate binding domain K04M1_34190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_34200 PF07690 Major Facilitator Superfamily K04M1_34220 PF00583 Acetyltransferase (GNAT) family K04M1_34240 PF00486 Transcriptional regulatory protein, C terminal K04M1_34240 PF00072 Response regulator receiver domain K04M1_34250 PF00512 His Kinase A (phospho-acceptor) domain K04M1_34250 PF00672 HAMP domain K04M1_34250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_34280 PF00923 Transaldolase/Fructose-6-phosphate aldolase K04M1_34290 PF04055 Radical SAM superfamily K04M1_34340 PF08000 Bacterial PH domain K04M1_34370 PF13677 Membrane MotB of proton-channel complex MotA/MotB K04M1_34370 PF00691 OmpA family K04M1_34380 PF01618 MotA/TolQ/ExbB proton channel family K04M1_34390 PF04542 Sigma-70 region 2 K04M1_34390 PF04545 Sigma-70, region 4 K04M1_34400 PF03748 Flagellar basal body-associated protein FliL K04M1_34430 PF02561 Flagellar protein FliS K04M1_34440 PF02465 Flagellar hook-associated protein 2 N-terminus K04M1_34440 PF07195 Flagellar hook-associated protein 2 C-terminus K04M1_34440 PF07196 Flagellin hook IN motif K04M1_34460 PF00669 Bacterial flagellin N-terminal helical region K04M1_34460 PF00700 Bacterial flagellin C-terminal helical region K04M1_34480 PF00771 FHIPEP family K04M1_34490 PF01312 FlhB HrpN YscU SpaS Family K04M1_34500 PF01311 Bacterial export proteins, family 1 K04M1_34510 PF01313 Bacterial export proteins, family 3 K04M1_34520 PF00813 FliP family K04M1_34530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K04M1_34560 PF02954 Bacterial regulatory protein, Fis family K04M1_34560 PF00072 Response regulator receiver domain K04M1_34560 PF00158 Sigma-54 interaction domain K04M1_34570 PF02049 Flagellar hook-basal body complex protein FliE K04M1_34580 PF08345 Flagellar M-ring protein C-terminal K04M1_34580 PF01514 Secretory protein of YscJ/FliF family K04M1_34590 PF14842 FliG N-terminal domain K04M1_34590 PF14841 FliG middle domain K04M1_34590 PF01706 FliG C-terminal domain K04M1_34610 PF18269 T3SS EscN ATPase C-terminal domain K04M1_34610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M1_34640 PF03466 LysR substrate binding domain K04M1_34640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_34700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M1_34710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_34710 PF03466 LysR substrate binding domain K04M1_34750 PF00486 Transcriptional regulatory protein, C terminal K04M1_34750 PF00072 Response regulator receiver domain K04M1_34760 PF13426 PAS domain K04M1_34760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_34760 PF00512 His Kinase A (phospho-acceptor) domain K04M1_34760 PF08448 PAS fold K04M1_34760 PF00072 Response regulator receiver domain K04M1_34770 PF00080 Copper/zinc superoxide dismutase (SODC) K04M1_34800 PF00990 Diguanylate cyclase, GGDEF domain K04M1_34800 PF00563 EAL domain K04M1_34800 PF13188 PAS domain K04M1_34800 PF03707 Bacterial signalling protein N terminal repeat K04M1_34810 PF00155 Aminotransferase class I and II K04M1_34820 PF00107 Zinc-binding dehydrogenase K04M1_34820 PF08240 Alcohol dehydrogenase GroES-like domain K04M1_34880 PF00194 Eukaryotic-type carbonic anhydrase K04M1_34890 PF00924 Mechanosensitive ion channel K04M1_34910 PF01070 FMN-dependent dehydrogenase K04M1_34920 PF02652 L-lactate permease K04M1_34930 PF03466 LysR substrate binding domain K04M1_34930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_34940 PF00326 Prolyl oligopeptidase family K04M1_34940 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K04M1_34950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_34950 PF00005 ABC transporter K04M1_34970 PF05362 Lon protease (S16) C-terminal proteolytic domain K04M1_34970 PF13654 AAA domain K04M1_34980 PF00672 HAMP domain K04M1_34980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_34980 PF12729 Four helix bundle sensory module for signal transduction K04M1_34990 PF13609 Gram-negative porin K04M1_35000 PF12945 Flagellar protein YcgR K04M1_35000 PF07238 PilZ domain K04M1_35030 PF00583 Acetyltransferase (GNAT) family K04M1_35040 PF12838 4Fe-4S dicluster domain K04M1_35040 PF12800 4Fe-4S binding domain K04M1_35050 PF13237 4Fe-4S dicluster domain K04M1_35050 PF12801 4Fe-4S binding domain K04M1_35090 PF00005 ABC transporter K04M1_35090 PF12558 ATP-binding cassette cobalt transporter K04M1_35100 PF07155 ECF-type riboflavin transporter, S component K04M1_35110 PF00529 HlyD membrane-fusion protein of T1SS K04M1_35110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_35120 PF11742 Protein of unknown function (DUF3302) K04M1_35130 PF00990 Diguanylate cyclase, GGDEF domain K04M1_35160 PF01048 Phosphorylase superfamily K04M1_35170 PF08349 Protein of unknown function (DUF1722) K04M1_35180 PF13411 MerR HTH family regulatory protein K04M1_35190 PF00875 DNA photolyase K04M1_35190 PF03441 FAD binding domain of DNA photolyase K04M1_35200 PF03734 L,D-transpeptidase catalytic domain K04M1_35200 PF01476 LysM domain K04M1_35200 PF17969 L,D-transpeptidase C-terminal domain K04M1_35220 PF00270 DEAD/DEAH box helicase K04M1_35220 PF00271 Helicase conserved C-terminal domain K04M1_35230 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K04M1_35230 PF00326 Prolyl oligopeptidase family K04M1_35240 PF07715 TonB-dependent Receptor Plug Domain K04M1_35240 PF00593 TonB dependent receptor K04M1_35280 PF00672 HAMP domain K04M1_35280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_35290 PF12849 PBP superfamily domain K04M1_35300 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_35310 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_35320 PF00005 ABC transporter K04M1_35350 PF13519 von Willebrand factor type A domain K04M1_35360 PF13519 von Willebrand factor type A domain K04M1_35380 PF01882 Protein of unknown function DUF58 K04M1_35390 PF07726 ATPase family associated with various cellular activities (AAA) K04M1_35390 PF17863 AAA lid domain K04M1_35400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_35400 PF02743 Cache domain K04M1_35400 PF00672 HAMP domain K04M1_35420 PF00196 Bacterial regulatory proteins, luxR family K04M1_35430 PF00196 Bacterial regulatory proteins, luxR family K04M1_35450 PF00664 ABC transporter transmembrane region K04M1_35450 PF00005 ABC transporter K04M1_35460 PF00529 HlyD membrane-fusion protein of T1SS K04M1_35480 PF01032 FecCD transport family K04M1_35490 PF01497 Periplasmic binding protein K04M1_35500 PF00005 ABC transporter K04M1_35510 PF00593 TonB dependent receptor K04M1_35510 PF07715 TonB-dependent Receptor Plug Domain K04M1_35520 PF00005 ABC transporter K04M1_35520 PF00664 ABC transporter transmembrane region K04M1_35530 PF00512 His Kinase A (phospho-acceptor) domain K04M1_35530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_35540 PF00072 Response regulator receiver domain K04M1_35540 PF00486 Transcriptional regulatory protein, C terminal K04M1_35550 PF02080 TrkA-C domain K04M1_35550 PF02254 TrkA-N domain K04M1_35560 PF02386 Cation transport protein K04M1_35570 PF03466 LysR substrate binding domain K04M1_35570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_35580 PF02028 BCCT, betaine/carnitine/choline family transporter K04M1_35590 PF00355 Rieske [2Fe-2S] domain K04M1_35590 PF00848 Ring hydroxylating alpha subunit (catalytic domain) K04M1_35610 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_35610 PF18113 Rubredoxin binding C-terminal domain K04M1_35620 PF01266 FAD dependent oxidoreductase K04M1_35640 PF00127 Copper binding proteins, plastocyanin/azurin family K04M1_35650 PF13419 Haloacid dehalogenase-like hydrolase K04M1_35670 PF01590 GAF domain K04M1_35670 PF00158 Sigma-54 interaction domain K04M1_35680 PF00301 Rubredoxin K04M1_35680 PF00753 Metallo-beta-lactamase superfamily K04M1_35680 PF00258 Flavodoxin K04M1_35690 PF18113 Rubredoxin binding C-terminal domain K04M1_35690 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_35710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M1_35710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K04M1_35720 PF06628 Catalase-related immune-responsive K04M1_35720 PF00199 Catalase K04M1_35730 PF13417 Glutathione S-transferase, N-terminal domain K04M1_35740 PF00107 Zinc-binding dehydrogenase K04M1_35740 PF16884 N-terminal domain of oxidoreductase K04M1_35750 PF00440 Bacterial regulatory proteins, tetR family K04M1_35750 PF16925 Tetracyclin repressor-like, C-terminal domain K04M1_35820 PF13439 Glycosyltransferase Family 4 K04M1_35820 PF00534 Glycosyl transferases group 1 K04M1_35840 PF13807 G-rich domain on putative tyrosine kinase K04M1_35840 PF02706 Chain length determinant protein K04M1_35840 PF13614 AAA domain K04M1_35870 PF02397 Bacterial sugar transferase K04M1_35880 PF08402 TOBE domain K04M1_35880 PF00005 ABC transporter K04M1_35890 PF01547 Bacterial extracellular solute-binding protein K04M1_35900 PF14785 Maltose transport system permease protein MalF P2 domain K04M1_35900 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_35910 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_35970 PF05661 Protein of unknown function (DUF808) K04M1_35980 PF01979 Amidohydrolase family K04M1_35990 PF01679 Proteolipid membrane potential modulator K04M1_36000 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M1_36000 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M1_36000 PF03476 MOSC N-terminal beta barrel domain K04M1_36000 PF03476 MOSC N-terminal beta barrel domain K04M1_36000 PF03473 MOSC domain K04M1_36000 PF03473 MOSC domain K04M1_36010 PF02540 NAD synthase K04M1_36020 PF01467 Cytidylyltransferase-like K04M1_36100 PF00005 ABC transporter K04M1_36110 PF01032 FecCD transport family K04M1_36130 PF02472 Biopolymer transport protein ExbD/TolR K04M1_36140 PF01618 MotA/TolQ/ExbB proton channel family K04M1_36150 PF03544 Gram-negative bacterial TonB protein C-terminal K04M1_36160 PF04055 Radical SAM superfamily K04M1_36170 PF06228 Haem utilisation ChuX/HutX K04M1_36180 PF01243 Pyridoxamine 5'-phosphate oxidase K04M1_36200 PF01584 CheW-like domain K04M1_36200 PF00072 Response regulator receiver domain K04M1_36220 PF01554 MatE K04M1_36230 PF00005 ABC transporter K04M1_36230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_36240 PF00005 ABC transporter K04M1_36240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_36250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_36260 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_36270 PF00455 DeoR C terminal sensor domain K04M1_36270 PF08220 DeoR-like helix-turn-helix domain K04M1_36280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M1_36280 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K04M1_36290 PF17042 Nucleotide-binding C-terminal domain K04M1_36290 PF07005 Sugar-binding N-terminal domain K04M1_36300 PF00596 Class II Aldolase and Adducin N-terminal domain K04M1_36310 PF01261 Xylose isomerase-like TIM barrel K04M1_36320 PF01370 NAD dependent epimerase/dehydratase family K04M1_36330 PF02447 GntP family permease K04M1_36340 PF02583 Metal-sensitive transcriptional repressor K04M1_36350 PF03824 High-affinity nickel-transport protein K04M1_36360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_36360 PF00672 HAMP domain K04M1_36360 PF02743 Cache domain K04M1_36370 PF03466 LysR substrate binding domain K04M1_36370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_36380 PF17848 Acetyl-coA carboxylase zinc finger domain K04M1_36380 PF01039 Carboxyl transferase domain K04M1_36400 PF04151 Bacterial pre-peptidase C-terminal domain K04M1_36400 PF08453 Peptidase family M9 N-terminal K04M1_36400 PF01752 Collagenase K04M1_36420 PF02627 Carboxymuconolactone decarboxylase family K04M1_36430 PF13411 MerR HTH family regulatory protein K04M1_36440 PF00128 Alpha amylase, catalytic domain K04M1_36470 PF02254 TrkA-N domain K04M1_36470 PF00999 Sodium/hydrogen exchanger family K04M1_36480 PF02525 Flavodoxin-like fold K04M1_36490 PF00582 Universal stress protein family K04M1_36500 PF12848 ABC transporter K04M1_36500 PF16326 ABC transporter C-terminal domain K04M1_36500 PF00005 ABC transporter K04M1_36510 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K04M1_36510 PF00326 Prolyl oligopeptidase family K04M1_36530 PF13533 Biotin-lipoyl like K04M1_36540 PF00873 AcrB/AcrD/AcrF family K04M1_36550 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M1_36570 PF13302 Acetyltransferase (GNAT) domain K04M1_36590 PF00990 Diguanylate cyclase, GGDEF domain K04M1_36590 PF17151 Periplasmic sensor domain K04M1_36620 PF00873 AcrB/AcrD/AcrF family K04M1_36630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_36660 PF12838 4Fe-4S dicluster domain K04M1_36660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M1_36660 PF00384 Molybdopterin oxidoreductase K04M1_36660 PF01568 Molydopterin dinucleotide binding domain K04M1_36660 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K04M1_36690 PF00005 ABC transporter K04M1_36710 PF01418 Helix-turn-helix domain, rpiR family K04M1_36710 PF02685 Glucokinase K04M1_36710 PF01380 SIS domain K04M1_36730 PF07969 Amidohydrolase family K04M1_36750 PF00474 Sodium:solute symporter family K04M1_36760 PF00294 pfkB family carbohydrate kinase K04M1_36770 PF01081 KDPG and KHG aldolase K04M1_36780 PF00728 Glycosyl hydrolase family 20, catalytic domain K04M1_36780 PF02838 Glycosyl hydrolase family 20, domain 2 K04M1_36790 PF10282 Lactonase, 7-bladed beta-propeller K04M1_36800 PF01042 Endoribonuclease L-PSP K04M1_36810 PF02567 Phenazine biosynthesis-like protein K04M1_36820 PF01161 Phosphatidylethanolamine-binding protein K04M1_36840 PF01758 Sodium Bile acid symporter family K04M1_36870 PF01638 HxlR-like helix-turn-helix K04M1_36920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_36920 PF03466 LysR substrate binding domain K04M1_36930 PF00248 Aldo/keto reductase family K04M1_36940 PF03928 Haem-degrading K04M1_36980 PF03222 Tryptophan/tyrosine permease family K04M1_37000 PF02743 Cache domain K04M1_37000 PF00672 HAMP domain K04M1_37000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_37050 PF01551 Peptidase family M23 K04M1_37050 PF08525 Opacity-associated protein A N-terminal motif K04M1_37050 PF01476 LysM domain K04M1_37060 PF08448 PAS fold K04M1_37060 PF08447 PAS fold K04M1_37060 PF00563 EAL domain K04M1_37060 PF00990 Diguanylate cyclase, GGDEF domain K04M1_37070 PF03466 LysR substrate binding domain K04M1_37070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_37080 PF07690 Major Facilitator Superfamily K04M1_37110 PF00462 Glutaredoxin K04M1_37120 PF00892 EamA-like transporter family K04M1_37130 PF00267 Gram-negative porin K04M1_37150 PF01557 Fumarylacetoacetate (FAA) hydrolase family K04M1_37190 PF01810 LysE type translocator K04M1_37210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K04M1_37210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K04M1_37210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K04M1_37210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K04M1_37220 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K04M1_37220 PF02790 Cytochrome C oxidase subunit II, transmembrane domain K04M1_37230 PF00115 Cytochrome C and Quinol oxidase polypeptide I K04M1_37240 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 K04M1_37250 PF00510 Cytochrome c oxidase subunit III K04M1_37280 PF02628 Cytochrome oxidase assembly protein K04M1_37290 PF01040 UbiA prenyltransferase family K04M1_37300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K04M1_37300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M1_37320 PF05736 OprF membrane domain K04M1_37320 PF00691 OmpA family K04M1_37360 PF00313 'Cold-shock' DNA-binding domain K04M1_37370 PF03889 Alternative ribosome-rescue factor A K04M1_37380 PF00990 Diguanylate cyclase, GGDEF domain K04M1_37390 PF00140 Sigma-70 factor, region 1.2 K04M1_37390 PF04545 Sigma-70, region 4 K04M1_37390 PF04539 Sigma-70 region 3 K04M1_37390 PF04542 Sigma-70 region 2 K04M1_37410 PF00005 ABC transporter K04M1_37410 PF00664 ABC transporter transmembrane region K04M1_37420 PF00005 ABC transporter K04M1_37420 PF00664 ABC transporter transmembrane region K04M1_37430 PF02321 Outer membrane efflux protein K04M1_37440 PF00072 Response regulator receiver domain K04M1_37440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_37450 PF13533 Biotin-lipoyl like K04M1_37490 PF00672 HAMP domain K04M1_37490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_37490 PF17200 Single Cache domain 2 K04M1_37510 PF00210 Ferritin-like domain K04M1_37530 PF07995 Glucose / Sorbosone dehydrogenase K04M1_37540 PF00465 Iron-containing alcohol dehydrogenase K04M1_37570 PF00892 EamA-like transporter family K04M1_37590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_37590 PF03466 LysR substrate binding domain K04M1_37610 PF13193 AMP-binding enzyme C-terminal domain K04M1_37610 PF00501 AMP-binding enzyme K04M1_37620 PF00351 Biopterin-dependent aromatic amino acid hydroxylase K04M1_37630 PF01329 Pterin 4 alpha carbinolamine dehydratase K04M1_37670 PF12843 Putative quorum-sensing-regulated virulence factor K04M1_37710 PF00271 Helicase conserved C-terminal domain K04M1_37710 PF00270 DEAD/DEAH box helicase K04M1_37720 PF09905 DNA-binding protein VF530 K04M1_37740 PF00291 Pyridoxal-phosphate dependent enzyme K04M1_37750 PF00313 'Cold-shock' DNA-binding domain K04M1_37770 PF01470 Pyroglutamyl peptidase K04M1_37790 PF02492 CobW/HypB/UreG, nucleotide-binding domain K04M1_37790 PF07683 Cobalamin synthesis protein cobW C-terminal domain K04M1_37800 PF00271 Helicase conserved C-terminal domain K04M1_37800 PF00270 DEAD/DEAH box helicase K04M1_37840 PF12792 CSS motif domain associated with EAL K04M1_37840 PF00563 EAL domain K04M1_37850 PF00005 ABC transporter K04M1_37860 PF00672 HAMP domain K04M1_37860 PF12729 Four helix bundle sensory module for signal transduction K04M1_37860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_37890 PF12849 PBP superfamily domain K04M1_37910 PF12833 Helix-turn-helix domain K04M1_37920 PF08206 Ribonuclease B OB domain K04M1_37920 PF00773 RNB domain K04M1_37920 PF00575 S1 RNA binding domain K04M1_37930 PF03880 DbpA RNA binding domain K04M1_37930 PF00270 DEAD/DEAH box helicase K04M1_37930 PF00271 Helicase conserved C-terminal domain K04M1_37940 PF00871 Acetokinase family K04M1_37950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_37950 PF03466 LysR substrate binding domain K04M1_37960 PF12146 Serine aminopeptidase, S33 K04M1_37970 PF12146 Serine aminopeptidase, S33 K04M1_38000 PF01925 Sulfite exporter TauE/SafE K04M1_38030 PF01979 Amidohydrolase family K04M1_38040 PF00132 Bacterial transferase hexapeptide (six repeats) K04M1_38050 PF07683 Cobalamin synthesis protein cobW C-terminal domain K04M1_38050 PF02492 CobW/HypB/UreG, nucleotide-binding domain K04M1_38060 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K04M1_38070 PF08525 Opacity-associated protein A N-terminal motif K04M1_38070 PF01551 Peptidase family M23 K04M1_38070 PF01476 LysM domain K04M1_38090 PF02492 CobW/HypB/UreG, nucleotide-binding domain K04M1_38090 PF07683 Cobalamin synthesis protein cobW C-terminal domain K04M1_38100 PF07683 Cobalamin synthesis protein cobW C-terminal domain K04M1_38100 PF02492 CobW/HypB/UreG, nucleotide-binding domain K04M1_38110 PF01258 Prokaryotic dksA/traR C4-type zinc finger K04M1_38120 PF01914 MarC family integral membrane protein K04M1_38140 PF13426 PAS domain K04M1_38140 PF08447 PAS fold K04M1_38140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_38160 PF00682 HMGL-like K04M1_38170 PF00378 Enoyl-CoA hydratase/isomerase K04M1_38180 PF01039 Carboxyl transferase domain K04M1_38190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M1_38190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M1_38190 PF02770 Acyl-CoA dehydrogenase, middle domain K04M1_38200 PF09278 MerR, DNA binding K04M1_38200 PF00376 MerR family regulatory protein K04M1_38210 PF00108 Thiolase, N-terminal domain K04M1_38210 PF02803 Thiolase, C-terminal domain K04M1_38220 PF00171 Aldehyde dehydrogenase family K04M1_38240 PF00378 Enoyl-CoA hydratase/isomerase K04M1_38250 PF00378 Enoyl-CoA hydratase/isomerase K04M1_38260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M1_38260 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K04M1_38280 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K04M1_38280 PF06481 COX Aromatic Rich Motif K04M1_38290 PF00115 Cytochrome C and Quinol oxidase polypeptide I K04M1_38300 PF00510 Cytochrome c oxidase subunit III K04M1_38320 PF01040 UbiA prenyltransferase family K04M1_38330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M1_38330 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_38360 PF00171 Aldehyde dehydrogenase family K04M1_38380 PF02028 BCCT, betaine/carnitine/choline family transporter K04M1_38440 PF00005 ABC transporter K04M1_38450 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_38460 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_38470 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_38490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_38490 PF03466 LysR substrate binding domain K04M1_38520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_38520 PF03466 LysR substrate binding domain K04M1_38540 PF01012 Electron transfer flavoprotein domain K04M1_38540 PF00766 Electron transfer flavoprotein FAD-binding domain K04M1_38550 PF02817 e3 binding domain K04M1_38550 PF00364 Biotin-requiring enzyme K04M1_38550 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K04M1_38560 PF02779 Transketolase, pyrimidine binding domain K04M1_38560 PF02780 Transketolase, C-terminal domain K04M1_38570 PF00676 Dehydrogenase E1 component K04M1_38610 PF00012 Hsp70 protein K04M1_38620 PF04314 Copper chaperone PCu(A)C K04M1_38670 PF00486 Transcriptional regulatory protein, C terminal K04M1_38670 PF00072 Response regulator receiver domain K04M1_38710 PF00082 Subtilase family K04M1_38710 PF01483 Proprotein convertase P-domain K04M1_38730 PF00990 Diguanylate cyclase, GGDEF domain K04M1_38730 PF07694 5TMR of 5TMR-LYT K04M1_38750 PF03222 Tryptophan/tyrosine permease family K04M1_38770 PF01568 Molydopterin dinucleotide binding domain K04M1_38770 PF00384 Molybdopterin oxidoreductase K04M1_38770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M1_38780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M1_38780 PF10414 Sirohaem synthase dimerisation region K04M1_38780 PF14824 Sirohaem biosynthesis protein central K04M1_38790 PF00591 Glycosyl transferase family, a/b domain K04M1_38790 PF02885 Glycosyl transferase family, helical bundle domain K04M1_38800 PF01738 Dienelactone hydrolase family K04M1_38810 PF03861 ANTAR domain K04M1_38810 PF08376 Nitrate and nitrite sensing K04M1_38820 PF00005 ABC transporter K04M1_38830 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_38840 PF00005 ABC transporter K04M1_38850 PF13806 Rieske-like [2Fe-2S] domain K04M1_38850 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_38850 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K04M1_38850 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K04M1_38850 PF04324 BFD-like [2Fe-2S] binding domain K04M1_38850 PF18267 Rubredoxin NAD+ reductase C-terminal domain K04M1_38910 PF00211 Adenylate and Guanylate cyclase catalytic domain K04M1_38910 PF00072 Response regulator receiver domain K04M1_38950 PF00069 Protein kinase domain K04M1_38950 PF03793 PASTA domain K04M1_38990 PF13677 Membrane MotB of proton-channel complex MotA/MotB K04M1_38990 PF00691 OmpA family K04M1_39110 PF17871 AAA lid domain K04M1_39110 PF00004 ATPase family associated with various cellular activities (AAA) K04M1_39110 PF10431 C-terminal, D2-small domain, of ClpB protein K04M1_39110 PF07724 AAA domain (Cdc48 subfamily) K04M1_39130 PF16671 Actin cross-linking domain K04M1_39130 PF04717 Type VI secretion system, phage-baseplate injector K04M1_39160 PF00149 Calcineurin-like phosphoesterase K04M1_39160 PF12320 Type 5 capsule protein repressor C-terminal domain K04M1_39170 PF13476 AAA domain K04M1_39190 PF08212 Lipocalin-like domain K04M1_39210 PF03606 C4-dicarboxylate anaerobic carrier K04M1_39230 PF01212 Beta-eliminating lyase K04M1_39250 PF07728 AAA domain (dynein-related subfamily) K04M1_39250 PF12592 Protein of unknown function (DUF3763) K04M1_39250 PF17868 AAA lid domain K04M1_39260 PF05762 VWA domain containing CoxE-like protein K04M1_39290 PF03466 LysR substrate binding domain K04M1_39290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_39300 PF01565 FAD binding domain K04M1_39300 PF09330 D-lactate dehydrogenase, membrane binding K04M1_39330 PF00842 Alanine racemase, C-terminal domain K04M1_39330 PF01168 Alanine racemase, N-terminal domain K04M1_39340 PF00672 HAMP domain K04M1_39340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_39400 PF00929 Exonuclease K04M1_39400 PF14579 Helix-hairpin-helix motif K04M1_39400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K04M1_39400 PF07733 Bacterial DNA polymerase III alpha NTPase domain K04M1_39400 PF02811 PHP domain K04M1_39490 PF02511 Thymidylate synthase complementing protein K04M1_39500 PF03477 ATP cone domain K04M1_39500 PF13597 Anaerobic ribonucleoside-triphosphate reductase K04M1_39890 PF00128 Alpha amylase, catalytic domain K04M1_39890 PF09154 Domain of unknown function (DUF1939) K04M1_39950 PF00296 Luciferase-like monooxygenase K04M1_39960 PF03707 Bacterial signalling protein N terminal repeat K04M1_39960 PF00990 Diguanylate cyclase, GGDEF domain K04M1_39960 PF00563 EAL domain K04M1_39980 PF03707 Bacterial signalling protein N terminal repeat K04M1_39980 PF00563 EAL domain K04M1_39980 PF00990 Diguanylate cyclase, GGDEF domain K04M1_39990 PF14760 Rnk N-terminus K04M1_39990 PF01272 Transcription elongation factor, GreA/GreB, C-term K04M1_40010 PF18267 Rubredoxin NAD+ reductase C-terminal domain K04M1_40010 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_40010 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K04M1_40010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K04M1_40010 PF04324 BFD-like [2Fe-2S] binding domain K04M1_40020 PF13806 Rieske-like [2Fe-2S] domain K04M1_40030 PF01226 Formate/nitrite transporter K04M1_40040 PF10414 Sirohaem synthase dimerisation region K04M1_40040 PF14824 Sirohaem biosynthesis protein central K04M1_40040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M1_40070 PF03605 Anaerobic c4-dicarboxylate membrane transporter K04M1_40090 PF07715 TonB-dependent Receptor Plug Domain K04M1_40090 PF00593 TonB dependent receptor K04M1_40110 PF13302 Acetyltransferase (GNAT) domain K04M1_40120 PF11756 Nitrous oxide-stimulated promoter K04M1_40130 PF07690 Major Facilitator Superfamily K04M1_40140 PF00085 Thioredoxin K04M1_40150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K04M1_40150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K04M1_40190 PF01238 Phosphomannose isomerase type I K04M1_40200 PF07690 Major Facilitator Superfamily K04M1_40210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_40210 PF07730 Histidine kinase K04M1_40210 PF05231 MASE1 K04M1_40220 PF00196 Bacterial regulatory proteins, luxR family K04M1_40220 PF00072 Response regulator receiver domain K04M1_40230 PF07690 Major Facilitator Superfamily K04M1_40240 PF02634 FdhD/NarQ family K04M1_40250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_40250 PF03466 LysR substrate binding domain K04M1_40260 PF00384 Molybdopterin oxidoreductase K04M1_40290 PF02567 Phenazine biosynthesis-like protein K04M1_40300 PF01177 Asp/Glu/Hydantoin racemase K04M1_40310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M1_40310 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M1_40330 PF04143 Sulphur transport K04M1_40360 PF03477 ATP cone domain K04M1_40360 PF13597 Anaerobic ribonucleoside-triphosphate reductase K04M1_40380 PF01554 MatE K04M1_40390 PF12833 Helix-turn-helix domain K04M1_40390 PF12852 Cupin K04M1_40400 PF00155 Aminotransferase class I and II K04M1_40410 PF18030 RimK PreATP-grasp domain K04M1_40410 PF08443 RimK-like ATP-grasp domain K04M1_40430 PF04076 Bacterial OB fold (BOF) protein K04M1_40440 PF07685 CobB/CobQ-like glutamine amidotransferase domain K04M1_40440 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K04M1_40460 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_40470 PF00005 ABC transporter K04M1_40470 PF03459 TOBE domain K04M1_40490 PF00563 EAL domain K04M1_40490 PF01590 GAF domain K04M1_40490 PF00990 Diguanylate cyclase, GGDEF domain K04M1_40490 PF00360 Phytochrome region K04M1_40500 PF00990 Diguanylate cyclase, GGDEF domain K04M1_40500 PF00072 Response regulator receiver domain K04M1_40530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K04M1_40530 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch K04M1_40530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K04M1_40540 PF02233 NAD(P) transhydrogenase beta subunit K04M1_40560 PF00486 Transcriptional regulatory protein, C terminal K04M1_40560 PF00072 Response regulator receiver domain K04M1_40590 PF03701 Uncharacterised protein family (UPF0181) K04M1_40600 PF00582 Universal stress protein family K04M1_40620 PF03466 LysR substrate binding domain K04M1_40620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_40920 PF01253 Translation initiation factor SUI1 K04M1_40940 PF07478 D-ala D-ala ligase C-terminus K04M1_40940 PF01820 D-ala D-ala ligase N-terminus K04M1_40950 PF05036 Sporulation related domain K04M1_40960 PF13380 CoA binding domain K04M1_40960 PF00583 Acetyltransferase (GNAT) family K04M1_40960 PF13607 Succinyl-CoA ligase like flavodoxin domain K04M1_40970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_40970 PF03466 LysR substrate binding domain K04M1_40980 PF07715 TonB-dependent Receptor Plug Domain K04M1_40980 PF00593 TonB dependent receptor K04M1_40980 PF04886 PT repeat K04M1_40990 PF16363 GDP-mannose 4,6 dehydratase K04M1_41000 PF05231 MASE1 K04M1_41000 PF08448 PAS fold K04M1_41000 PF00563 EAL domain K04M1_41000 PF13426 PAS domain K04M1_41000 PF00990 Diguanylate cyclase, GGDEF domain K04M1_41000 PF08447 PAS fold K04M1_41010 PF03746 LamB/YcsF family K04M1_41020 PF02682 Carboxyltransferase domain, subdomain C and D K04M1_41030 PF02626 Carboxyltransferase domain, subdomain A and B K04M1_41060 PF00005 ABC transporter K04M1_41070 PF13472 GDSL-like Lipase/Acylhydrolase family K04M1_41080 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase K04M1_41080 PF07055 Enoyl reductase FAD binding domain K04M1_41080 PF12241 Trans-2-enoyl-CoA reductase catalytic region K04M1_41090 PF00563 EAL domain K04M1_41090 PF00990 Diguanylate cyclase, GGDEF domain K04M1_41090 PF03707 Bacterial signalling protein N terminal repeat K04M1_41090 PF13188 PAS domain K04M1_41110 PF00684 DnaJ central domain K04M1_41110 PF01556 DnaJ C terminal domain K04M1_41110 PF00226 DnaJ domain K04M1_41160 PF12793 Sugar transport-related sRNA regulator N-term K04M1_41160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M1_41180 PF03061 Thioesterase superfamily K04M1_41210 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M1_41220 PF12262 Bacterial virulence factor lipase N-terminal K04M1_41260 PF03741 Integral membrane protein TerC family K04M1_41270 PF00149 Calcineurin-like phosphoesterase K04M1_41270 PF02872 5'-nucleotidase, C-terminal domain K04M1_41280 PF11398 Protein of unknown function (DUF2813) K04M1_41290 PF06496 Protein of unknown function (DUF1097) K04M1_41300 PF03466 LysR substrate binding domain K04M1_41300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_41320 PF01226 Formate/nitrite transporter K04M1_41330 PF04264 YceI-like domain K04M1_41340 PF01292 Prokaryotic cytochrome b561 K04M1_41380 PF00270 DEAD/DEAH box helicase K04M1_41380 PF00271 Helicase conserved C-terminal domain K04M1_41390 PF04336 Acyl carrier protein phosphodiesterase K04M1_41410 PF12729 Four helix bundle sensory module for signal transduction K04M1_41410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_41410 PF00672 HAMP domain K04M1_41420 PF13419 Haloacid dehalogenase-like hydrolase K04M1_41450 PF00294 pfkB family carbohydrate kinase K04M1_41460 PF01268 Formate--tetrahydrofolate ligase K04M1_41470 PF00483 Nucleotidyl transferase K04M1_41480 PF06483 Chitinase C K04M1_41480 PF00704 Glycosyl hydrolases family 18 K04M1_41490 PF12833 Helix-turn-helix domain K04M1_41490 PF06719 AraC-type transcriptional regulator N-terminus K04M1_41500 PF00465 Iron-containing alcohol dehydrogenase K04M1_41520 PF00005 ABC transporter K04M1_41530 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_41540 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M1_41550 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_41560 PF00563 EAL domain K04M1_41560 PF00990 Diguanylate cyclase, GGDEF domain K04M1_41560 PF00989 PAS fold K04M1_41560 PF01590 GAF domain K04M1_41590 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K04M1_41590 PF00356 Bacterial regulatory proteins, lacI family K04M1_41600 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K04M1_41600 PF00381 PTS HPr component phosphorylation site K04M1_41610 PF00294 pfkB family carbohydrate kinase K04M1_41620 PF02378 Phosphotransferase system, EIIC K04M1_41620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K04M1_41640 PF00873 AcrB/AcrD/AcrF family K04M1_41680 PF01571 Aminomethyltransferase folate-binding domain K04M1_41680 PF08669 Glycine cleavage T-protein C-terminal barrel domain K04M1_41700 PF00464 Serine hydroxymethyltransferase K04M1_41710 PF01597 Glycine cleavage H-protein K04M1_41720 PF02347 Glycine cleavage system P-protein K04M1_41730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M1_41740 PF00753 Metallo-beta-lactamase superfamily K04M1_41740 PF16123 Hydroxyacylglutathione hydrolase C-terminus K04M1_41750 PF03466 LysR substrate binding domain K04M1_41750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_41760 PF00892 EamA-like transporter family K04M1_41770 PF02627 Carboxymuconolactone decarboxylase family K04M1_41780 PF12833 Helix-turn-helix domain K04M1_41830 PF02811 PHP domain K04M1_41830 PF11490 DNA polymerase III polC-type N-terminus II K04M1_41830 PF14579 Helix-hairpin-helix motif K04M1_41830 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K04M1_41830 PF00929 Exonuclease K04M1_41830 PF07733 Bacterial DNA polymerase III alpha NTPase domain K04M1_41840 PF00005 ABC transporter K04M1_41840 PF00664 ABC transporter transmembrane region K04M1_41880 PF02253 Phospholipase A1 K04M1_41900 PF09278 MerR, DNA binding K04M1_41900 PF00376 MerR family regulatory protein K04M1_41910 PF01327 Polypeptide deformylase K04M1_41970 PF00571 CBS domain K04M1_41970 PF03448 MgtE intracellular N domain K04M1_41970 PF01769 Divalent cation transporter K04M1_42010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M1_42020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M1_42040 PF01757 Acyltransferase family K04M1_42070 PF00141 Peroxidase K04M1_42080 PF13187 4Fe-4S dicluster domain K04M1_42080 PF01645 Conserved region in glutamate synthase K04M1_42100 PF00171 Aldehyde dehydrogenase family K04M1_42130 PF00892 EamA-like transporter family K04M1_42140 PF00893 Small Multidrug Resistance protein K04M1_42180 PF00892 EamA-like transporter family K04M1_42200 PF08334 Type II secretion system (T2SS), protein G K04M1_42200 PF07963 Prokaryotic N-terminal methylation motif K04M1_42210 PF01584 CheW-like domain K04M1_42210 PF00072 Response regulator receiver domain K04M1_42220 PF00072 Response regulator receiver domain K04M1_42220 PF00196 Bacterial regulatory proteins, luxR family K04M1_42240 PF00990 Diguanylate cyclase, GGDEF domain K04M1_42250 PF00196 Bacterial regulatory proteins, luxR family K04M1_42250 PF00072 Response regulator receiver domain K04M1_42260 PF03707 Bacterial signalling protein N terminal repeat K04M1_42260 PF00990 Diguanylate cyclase, GGDEF domain K04M1_42260 PF00563 EAL domain K04M1_42260 PF13188 PAS domain K04M1_42270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_42270 PF09456 RcsC Alpha-Beta-Loop (ABL) K04M1_42270 PF00072 Response regulator receiver domain K04M1_42270 PF00512 His Kinase A (phospho-acceptor) domain K04M1_42280 PF01926 50S ribosome-binding GTPase K04M1_42290 PF00155 Aminotransferase class I and II K04M1_42300 PF00072 Response regulator receiver domain K04M1_42300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_42320 PF00814 Glycoprotease family K04M1_42320 PF00583 Acetyltransferase (GNAT) family K04M1_42340 PF03606 C4-dicarboxylate anaerobic carrier K04M1_42370 PF18081 Fanconi anemia-associated nuclease SAP domain K04M1_42370 PF08774 VRR-NUC domain K04M1_42390 PF04076 Bacterial OB fold (BOF) protein K04M1_42400 PF00781 Diacylglycerol kinase catalytic domain K04M1_42410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_42410 PF03466 LysR substrate binding domain K04M1_42420 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K04M1_42450 PF00092 von Willebrand factor type A domain K04M1_42480 PF17863 AAA lid domain K04M1_42480 PF07726 ATPase family associated with various cellular activities (AAA) K04M1_42490 PF04055 Radical SAM superfamily K04M1_42490 PF13186 Iron-sulfur cluster-binding domain K04M1_42500 PF00884 Sulfatase K04M1_42500 PF16385 Domain of unknown function K04M1_42510 PF03466 LysR substrate binding domain K04M1_42510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_42520 PF00884 Sulfatase K04M1_42530 PF00486 Transcriptional regulatory protein, C terminal K04M1_42530 PF00072 Response regulator receiver domain K04M1_42560 PF01627 Hpt domain K04M1_42560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_42560 PF00672 HAMP domain K04M1_42560 PF00072 Response regulator receiver domain K04M1_42560 PF00512 His Kinase A (phospho-acceptor) domain K04M1_42570 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K04M1_42580 PF02142 MGS-like domain K04M1_42590 PF00072 Response regulator receiver domain K04M1_42590 PF00486 Transcriptional regulatory protein, C terminal K04M1_42620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_42620 PF00512 His Kinase A (phospho-acceptor) domain K04M1_42620 PF01627 Hpt domain K04M1_42620 PF00072 Response regulator receiver domain K04M1_42620 PF00672 HAMP domain K04M1_42630 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K04M1_42640 PF02142 MGS-like domain K04M1_42650 PF00580 UvrD/REP helicase N-terminal domain K04M1_42650 PF13361 UvrD-like helicase C-terminal domain K04M1_42650 PF12462 DNA helicase IV / RNA helicase N terminal K04M1_42660 PF12805 FUSC-like inner membrane protein yccS K04M1_42720 PF07715 TonB-dependent Receptor Plug Domain K04M1_42720 PF00593 TonB dependent receptor K04M1_42740 PF13411 MerR HTH family regulatory protein K04M1_42750 PF00005 ABC transporter K04M1_42760 PF01032 FecCD transport family K04M1_42770 PF01032 FecCD transport family K04M1_42780 PF01497 Periplasmic binding protein K04M1_42800 PF01048 Phosphorylase superfamily K04M1_42810 PF04973 Nicotinamide mononucleotide transporter K04M1_42830 PF00356 Bacterial regulatory proteins, lacI family K04M1_42840 PF00294 pfkB family carbohydrate kinase K04M1_42850 PF13407 Periplasmic binding protein domain K04M1_42860 PF02653 Branched-chain amino acid transport system / permease component K04M1_42870 PF00005 ABC transporter K04M1_42880 PF05025 RbsD / FucU transport protein family K04M1_42890 PF00563 EAL domain K04M1_42890 PF00990 Diguanylate cyclase, GGDEF domain K04M1_42970 PF04116 Fatty acid hydroxylase superfamily K04M1_42990 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K04M1_42990 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K04M1_43010 PF09308 LuxQ, periplasmic K04M1_43010 PF00072 Response regulator receiver domain K04M1_43010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_43010 PF00512 His Kinase A (phospho-acceptor) domain K04M1_43020 PF00034 Cytochrome c K04M1_43020 PF03150 Di-haem cytochrome c peroxidase K04M1_43040 PF01145 SPFH domain / Band 7 family K04M1_43040 PF16200 C-terminal region of band_7 K04M1_43060 PF00881 Nitroreductase family K04M1_43070 PF00005 ABC transporter K04M1_43070 PF00571 CBS domain K04M1_43080 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_43090 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K04M1_43100 PF00732 GMC oxidoreductase K04M1_43100 PF05199 GMC oxidoreductase K04M1_43110 PF00171 Aldehyde dehydrogenase family K04M1_43120 PF00440 Bacterial regulatory proteins, tetR family K04M1_43120 PF13977 BetI-type transcriptional repressor, C-terminal K04M1_43130 PF00072 Response regulator receiver domain K04M1_43130 PF00990 Diguanylate cyclase, GGDEF domain K04M1_43150 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K04M1_43150 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M1_43170 PF00378 Enoyl-CoA hydratase/isomerase K04M1_43180 PF02770 Acyl-CoA dehydrogenase, middle domain K04M1_43180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M1_43180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M1_43190 PF00171 Aldehyde dehydrogenase family K04M1_43200 PF00108 Thiolase, N-terminal domain K04M1_43200 PF02803 Thiolase, C-terminal domain K04M1_43210 PF09278 MerR, DNA binding K04M1_43210 PF00376 MerR family regulatory protein K04M1_43220 PF02770 Acyl-CoA dehydrogenase, middle domain K04M1_43220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M1_43220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M1_43230 PF01039 Carboxyl transferase domain K04M1_43240 PF00378 Enoyl-CoA hydratase/isomerase K04M1_43250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K04M1_43250 PF00364 Biotin-requiring enzyme K04M1_43250 PF00289 Biotin carboxylase, N-terminal domain K04M1_43250 PF02785 Biotin carboxylase C-terminal domain K04M1_43260 PF00682 HMGL-like K04M1_43280 PF12795 Mechanosensitive ion channel porin domain K04M1_43280 PF12794 Mechanosensitive ion channel inner membrane domain 1 K04M1_43280 PF00924 Mechanosensitive ion channel K04M1_43290 PF12464 Maltose acetyltransferase K04M1_43290 PF14602 Hexapeptide repeat of succinyl-transferase K04M1_43300 PF00155 Aminotransferase class I and II K04M1_43300 PF00392 Bacterial regulatory proteins, gntR family K04M1_43310 PF01654 Cytochrome bd terminal oxidase subunit I K04M1_43320 PF02322 Cytochrome bd terminal oxidase subunit II K04M1_43340 PF02567 Phenazine biosynthesis-like protein K04M1_43360 PF13195 Protein of unknown function (DUF4011) K04M1_43360 PF13087 AAA domain K04M1_43360 PF13086 AAA domain K04M1_43360 PF13086 AAA domain K04M1_43360 PF13087 AAA domain K04M1_43360 PF13195 Protein of unknown function (DUF4011) K04M1_43370 PF03466 LysR substrate binding domain K04M1_43370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_43380 PF03306 Alpha-acetolactate decarboxylase K04M1_43390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K04M1_43390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K04M1_43390 PF00205 Thiamine pyrophosphate enzyme, central domain K04M1_43410 PF05724 Thiopurine S-methyltransferase (TPMT) K04M1_43420 PF14535 AMP-binding enzyme C-terminal domain K04M1_43420 PF00501 AMP-binding enzyme K04M1_43430 PF00005 ABC transporter K04M1_43470 PF00501 AMP-binding enzyme K04M1_43480 PF00005 ABC transporter K04M1_43480 PF12399 Branched-chain amino acid ATP-binding cassette transporter K04M1_43500 PF01012 Electron transfer flavoprotein domain K04M1_43510 PF01012 Electron transfer flavoprotein domain K04M1_43510 PF00766 Electron transfer flavoprotein FAD-binding domain K04M1_43520 PF13193 AMP-binding enzyme C-terminal domain K04M1_43520 PF00501 AMP-binding enzyme K04M1_43530 PF02378 Phosphotransferase system, EIIC K04M1_43530 PF00367 phosphotransferase system, EIIB K04M1_43540 PF02056 Family 4 glycosyl hydrolase K04M1_43540 PF11975 Family 4 glycosyl hydrolase C-terminal domain K04M1_43550 PF00392 Bacterial regulatory proteins, gntR family K04M1_43550 PF07702 UTRA domain K04M1_43560 PF03334 Na+/H+ antiporter subunit K04M1_43570 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) K04M1_43600 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K04M1_43610 PF00361 Proton-conducting membrane transporter K04M1_43610 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter K04M1_43610 PF13244 Domain of unknown function (DUF4040) K04M1_43610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K04M1_43630 PF00582 Universal stress protein family K04M1_43640 PF00106 short chain dehydrogenase K04M1_43650 PF03466 LysR substrate binding domain K04M1_43650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_43670 PF07690 Major Facilitator Superfamily K04M1_43800 PF01037 Lrp/AsnC ligand binding domain K04M1_43870 PF00069 Protein kinase domain K04M1_43920 PF04717 Type VI secretion system, phage-baseplate injector K04M1_43930 PF05638 Type VI secretion system effector, Hcp K04M1_43940 PF17871 AAA lid domain K04M1_43940 PF00004 ATPase family associated with various cellular activities (AAA) K04M1_43940 PF07724 AAA domain (Cdc48 subfamily) K04M1_43940 PF10431 C-terminal, D2-small domain, of ClpB protein K04M1_43950 PF00158 Sigma-54 interaction domain K04M1_43950 PF02954 Bacterial regulatory protein, Fis family K04M1_44000 PF01476 LysM domain K04M1_44000 PF08525 Opacity-associated protein A N-terminal motif K04M1_44000 PF01551 Peptidase family M23 K04M1_44010 PF00132 Bacterial transferase hexapeptide (six repeats) K04M1_44020 PF00144 Beta-lactamase K04M1_44030 PF00392 Bacterial regulatory proteins, gntR family K04M1_44060 PF01370 NAD dependent epimerase/dehydratase family K04M1_44060 PF00551 Formyl transferase K04M1_44060 PF02911 Formyl transferase, C-terminal domain K04M1_44110 PF08031 Berberine and berberine like K04M1_44110 PF01565 FAD binding domain K04M1_44130 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family K04M1_44140 PF00478 IMP dehydrogenase / GMP reductase domain K04M1_44150 PF01256 Carbohydrate kinase K04M1_44150 PF03853 YjeF-related protein N-terminus K04M1_44170 PF00072 Response regulator receiver domain K04M1_44180 PF00248 Aldo/keto reductase family K04M1_44210 PF00654 Voltage gated chloride channel K04M1_44230 PF01227 GTP cyclohydrolase I K04M1_44240 PF03453 MoeA N-terminal region (domain I and II) K04M1_44240 PF03454 MoeA C-terminal region (domain IV) K04M1_44240 PF00994 Probable molybdopterin binding domain K04M1_44250 PF00899 ThiF family K04M1_44280 PF00581 Rhodanese-like domain K04M1_44300 PF00923 Transaldolase/Fructose-6-phosphate aldolase K04M1_44310 PF00456 Transketolase, thiamine diphosphate binding domain K04M1_44310 PF02780 Transketolase, C-terminal domain K04M1_44310 PF02779 Transketolase, pyrimidine binding domain K04M1_44320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_44320 PF08447 PAS fold K04M1_44330 PF07690 Major Facilitator Superfamily K04M1_44340 PF00793 DAHP synthetase I family K04M1_44350 PF00691 OmpA family K04M1_44350 PF01389 OmpA-like transmembrane domain K04M1_44360 PF13419 Haloacid dehalogenase-like hydrolase K04M1_44370 PF00472 RF-1 domain K04M1_44380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_44380 PF00672 HAMP domain K04M1_44380 PF12729 Four helix bundle sensory module for signal transduction K04M1_44390 PF00873 AcrB/AcrD/AcrF family K04M1_44400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_44410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K04M1_44420 PF01546 Peptidase family M20/M25/M40 K04M1_44420 PF07687 Peptidase dimerisation domain K04M1_44450 PF00072 Response regulator receiver domain K04M1_44450 PF00196 Bacterial regulatory proteins, luxR family K04M1_44460 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term K04M1_44460 PF07730 Histidine kinase K04M1_44460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_44460 PF00672 HAMP domain K04M1_44470 PF12838 4Fe-4S dicluster domain K04M1_44470 PF13187 4Fe-4S dicluster domain K04M1_44490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M1_44490 PF00384 Molybdopterin oxidoreductase K04M1_44490 PF01568 Molydopterin dinucleotide binding domain K04M1_44500 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) K04M1_44510 PF03264 NapC/NirT cytochrome c family, N-terminal region K04M1_44530 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K04M1_44550 PF02803 Thiolase, C-terminal domain K04M1_44550 PF00108 Thiolase, N-terminal domain K04M1_44560 PF00106 short chain dehydrogenase K04M1_44570 PF01810 LysE type translocator K04M1_44590 PF07549 SecD/SecF GG Motif K04M1_44590 PF02355 Protein export membrane protein K04M1_44600 PF13721 SecD export protein N-terminal TM region K04M1_44600 PF07549 SecD/SecF GG Motif K04M1_44600 PF02355 Protein export membrane protein K04M1_44650 PF01037 Lrp/AsnC ligand binding domain K04M1_44690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_44690 PF00529 HlyD membrane-fusion protein of T1SS K04M1_44700 PF01047 MarR family K04M1_44710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_44710 PF00512 His Kinase A (phospho-acceptor) domain K04M1_44710 PF00072 Response regulator receiver domain K04M1_44710 PF09308 LuxQ, periplasmic K04M1_44720 PF13407 Periplasmic binding protein domain K04M1_44730 PF01541 GIY-YIG catalytic domain K04M1_44740 PF04337 Protein of unknown function, DUF480 K04M1_44760 PF04363 Protein of unknown function (DUF496) K04M1_44770 PF01554 MatE K04M1_44780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K04M1_44780 PF00072 Response regulator receiver domain K04M1_44780 PF00512 His Kinase A (phospho-acceptor) domain K04M1_44780 PF00672 HAMP domain K04M1_44780 PF01627 Hpt domain K04M1_44780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_44790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K04M1_44790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M1_44840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_44840 PF03466 LysR substrate binding domain K04M1_44860 PF13520 Amino acid permease K04M1_44870 PF00392 Bacterial regulatory proteins, gntR family K04M1_44870 PF00155 Aminotransferase class I and II K04M1_44890 PF16527 Two-component sensor protein CpxA, periplasmic domain K04M1_44890 PF00512 His Kinase A (phospho-acceptor) domain K04M1_44890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_44890 PF00672 HAMP domain K04M1_44900 PF00072 Response regulator receiver domain K04M1_44900 PF00486 Transcriptional regulatory protein, C terminal K04M1_44930 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term K04M1_44930 PF12833 Helix-turn-helix domain K04M1_44950 PF00529 HlyD membrane-fusion protein of T1SS K04M1_44950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_44960 PF03109 ABC1 family K04M1_44970 PF01769 Divalent cation transporter K04M1_44970 PF03448 MgtE intracellular N domain K04M1_44970 PF00571 CBS domain K04M1_44980 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin K04M1_44990 PF07969 Amidohydrolase family K04M1_45000 PF01966 HD domain K04M1_45020 PF07690 Major Facilitator Superfamily K04M1_45040 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K04M1_45050 PF00255 Glutathione peroxidase K04M1_45080 PF01323 DSBA-like thioredoxin domain K04M1_45110 PF00072 Response regulator receiver domain K04M1_45110 PF00486 Transcriptional regulatory protein, C terminal K04M1_45120 PF16527 Two-component sensor protein CpxA, periplasmic domain K04M1_45120 PF00512 His Kinase A (phospho-acceptor) domain K04M1_45120 PF00672 HAMP domain K04M1_45120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_45140 PF01219 Prokaryotic diacylglycerol kinase K04M1_45150 PF00884 Sulfatase K04M1_45150 PF08019 Phosphoethanolamine transferase EptA/EptB K04M1_45160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K04M1_45190 PF01734 Patatin-like phospholipase K04M1_45200 PF05726 Pirin C-terminal cupin domain K04M1_45200 PF02678 Pirin K04M1_45210 PF00313 'Cold-shock' DNA-binding domain K04M1_45240 PF00962 Adenosine/AMP deaminase K04M1_45250 PF00462 Glutaredoxin K04M1_45250 PF08534 Redoxin K04M1_45270 PF00768 D-alanyl-D-alanine carboxypeptidase K04M1_45270 PF07943 Penicillin-binding protein 5, C-terminal domain K04M1_45290 PF02798 Glutathione S-transferase, N-terminal domain K04M1_45300 PF08244 Glycosyl hydrolases family 32 C terminal K04M1_45300 PF00251 Glycosyl hydrolases family 32 N-terminal domain K04M1_45310 PF00294 pfkB family carbohydrate kinase K04M1_45320 PF00367 phosphotransferase system, EIIB K04M1_45320 PF02378 Phosphotransferase system, EIIC K04M1_45330 PF00356 Bacterial regulatory proteins, lacI family K04M1_45340 PF02264 LamB porin K04M1_45340 PF11471 Maltoporin periplasmic N-terminal extension K04M1_45420 PF00106 short chain dehydrogenase K04M1_45430 PF03466 LysR substrate binding domain K04M1_45430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_45440 PF01497 Periplasmic binding protein K04M1_45440 PF12833 Helix-turn-helix domain K04M1_45450 PF00155 Aminotransferase class I and II K04M1_45490 PF00270 DEAD/DEAH box helicase K04M1_45490 PF00271 Helicase conserved C-terminal domain K04M1_45510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_45510 PF03466 LysR substrate binding domain K04M1_45520 PF03466 LysR substrate binding domain K04M1_45520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_45540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M1_45550 PF00107 Zinc-binding dehydrogenase K04M1_45550 PF08240 Alcohol dehydrogenase GroES-like domain K04M1_45590 PF00392 Bacterial regulatory proteins, gntR family K04M1_45590 PF00155 Aminotransferase class I and II K04M1_45600 PF00557 Metallopeptidase family M24 K04M1_45600 PF01321 Creatinase/Prolidase N-terminal domain K04M1_45610 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K04M1_45620 PF01037 Lrp/AsnC ligand binding domain K04M1_45630 PF00171 Aldehyde dehydrogenase family K04M1_45640 PF00202 Aminotransferase class-III K04M1_45650 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) K04M1_45680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_45680 PF03466 LysR substrate binding domain K04M1_45700 PF17763 Glutaminase/Asparaginase C-terminal domain K04M1_45700 PF00710 Asparaginase, N-terminal K04M1_45710 PF03618 Kinase/pyrophosphorylase K04M1_45720 PF02896 PEP-utilising enzyme, TIM barrel domain K04M1_45720 PF00391 PEP-utilising enzyme, mobile domain K04M1_45720 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K04M1_45740 PF00196 Bacterial regulatory proteins, luxR family K04M1_45740 PF00072 Response regulator receiver domain K04M1_45750 PF00579 tRNA synthetases class I (W and Y) K04M1_45760 PF13416 Bacterial extracellular solute-binding protein K04M1_45790 PF00703 Glycosyl hydrolases family 2 K04M1_45790 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 K04M1_45790 PF02836 Glycosyl hydrolases family 2, TIM barrel domain K04M1_45790 PF02837 Glycosyl hydrolases family 2, sugar binding domain K04M1_45800 PF02028 BCCT, betaine/carnitine/choline family transporter K04M1_45810 PF00392 Bacterial regulatory proteins, gntR family K04M1_45810 PF07702 UTRA domain K04M1_45860 PF00005 ABC transporter K04M1_45860 PF08402 TOBE domain K04M1_45900 PF00873 AcrB/AcrD/AcrF family K04M1_45940 PF00873 AcrB/AcrD/AcrF family K04M1_45960 PF13091 PLD-like domain K04M1_45970 PF00398 Ribosomal RNA adenine dimethylase K04M1_46010 PF09278 MerR, DNA binding K04M1_46010 PF00376 MerR family regulatory protein K04M1_46030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_46030 PF03466 LysR substrate binding domain K04M1_46050 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K04M1_46050 PF13378 Enolase C-terminal domain-like K04M1_46060 PF03764 Elongation factor G, domain IV K04M1_46060 PF03144 Elongation factor Tu domain 2 K04M1_46060 PF00009 Elongation factor Tu GTP binding domain K04M1_46060 PF00679 Elongation factor G C-terminus K04M1_46060 PF14492 Elongation Factor G, domain II K04M1_46110 PF02001 Protein of unknown function DUF134 K04M1_46120 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_46130 PF00005 ABC transporter K04M1_46130 PF00571 CBS domain K04M1_46140 PF04170 NlpE N-terminal domain K04M1_46140 PF17185 NlpE C-terminal OB domain K04M1_46150 PF06629 MltA-interacting protein MipA K04M1_46180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_46180 PF03466 LysR substrate binding domain K04M1_46230 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain K04M1_46230 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family K04M1_46250 PF00857 Isochorismatase family K04M1_46280 PF08220 DeoR-like helix-turn-helix domain K04M1_46280 PF00455 DeoR C terminal sensor domain K04M1_46290 PF01625 Peptide methionine sulfoxide reductase K04M1_46290 PF01641 SelR domain K04M1_46300 PF03060 Nitronate monooxygenase K04M1_46310 PF13520 Amino acid permease K04M1_46320 PF05985 Ethanolamine ammonia-lyase light chain (EutC) K04M1_46330 PF06751 Ethanolamine ammonia lyase large subunit (EutB) K04M1_46340 PF12833 Helix-turn-helix domain K04M1_46350 PF08359 YsiA-like protein, C-terminal region K04M1_46350 PF00440 Bacterial regulatory proteins, tetR family K04M1_46380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_46380 PF03466 LysR substrate binding domain K04M1_46390 PF01810 LysE type translocator K04M1_46410 PF00118 TCP-1/cpn60 chaperonin family K04M1_46420 PF00166 Chaperonin 10 Kd subunit K04M1_46430 PF00581 Rhodanese-like domain K04M1_46460 PF01070 FMN-dependent dehydrogenase K04M1_46500 PF00669 Bacterial flagellin N-terminal helical region K04M1_46510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_46510 PF00460 Flagella basal body rod protein K04M1_46520 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K04M1_46520 PF10135 Rod binding protein K04M1_46530 PF02119 Flagellar P-ring protein K04M1_46540 PF02107 Flagellar L-ring protein K04M1_46550 PF00460 Flagella basal body rod protein K04M1_46550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_46560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_46560 PF00460 Flagella basal body rod protein K04M1_46570 PF00460 Flagella basal body rod protein K04M1_46570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_46570 PF07559 Flagellar basal body protein FlaE K04M1_46580 PF03963 Flagellar hook capping protein - N-terminal region K04M1_46580 PF13860 FlgD Ig-like domain K04M1_46580 PF13861 FlgD Tudor-like domain K04M1_46590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M1_46590 PF00460 Flagella basal body rod protein K04M1_46600 PF00460 Flagella basal body rod protein K04M1_46640 PF01464 Transglycosylase SLT domain K04M1_46650 PF08264 Anticodon-binding domain of tRNA K04M1_46650 PF00133 tRNA synthetases class I (I, L, M and V) K04M1_46690 PF03315 Serine dehydratase beta chain K04M1_46690 PF03313 Serine dehydratase alpha chain K04M1_46710 PF03466 LysR substrate binding domain K04M1_46710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_46720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_46720 PF03466 LysR substrate binding domain K04M1_46730 PF00691 OmpA family K04M1_46730 PF01389 OmpA-like transmembrane domain K04M1_46740 PF18027 Cytosolic carboxypeptidase N-terminal domain K04M1_46740 PF00246 Zinc carboxypeptidase K04M1_46750 PF01266 FAD dependent oxidoreductase K04M1_46770 PF04393 Protein of unknown function (DUF535) K04M1_46800 PF00392 Bacterial regulatory proteins, gntR family K04M1_46800 PF07702 UTRA domain K04M1_46810 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_46820 PF00005 ABC transporter K04M1_46850 PF00266 Aminotransferase class-V K04M1_46870 PF13419 Haloacid dehalogenase-like hydrolase K04M1_46880 PF00356 Bacterial regulatory proteins, lacI family K04M1_46890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K04M1_46910 PF03611 PTS system sugar-specific permease component K04M1_46940 PF00657 GDSL-like Lipase/Acylhydrolase K04M1_46950 PF00440 Bacterial regulatory proteins, tetR family K04M1_46970 PF02321 Outer membrane efflux protein K04M1_46980 PF12704 MacB-like periplasmic core domain K04M1_46980 PF02687 FtsX-like permease family K04M1_46980 PF00005 ABC transporter K04M1_46990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M1_47000 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M1_47010 PF00194 Eukaryotic-type carbonic anhydrase K04M1_47020 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) K04M1_47050 PF13419 Haloacid dehalogenase-like hydrolase K04M1_47060 PF03466 LysR substrate binding domain K04M1_47060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_47120 PF12464 Maltose acetyltransferase K04M1_47120 PF14602 Hexapeptide repeat of succinyl-transferase K04M1_47130 PF02566 OsmC-like protein K04M1_47140 PF01641 SelR domain K04M1_47140 PF01625 Peptide methionine sulfoxide reductase K04M1_47160 PF04244 Deoxyribodipyrimidine photo-lyase-related protein K04M1_47170 PF00875 DNA photolyase K04M1_47170 PF03441 FAD binding domain of DNA photolyase K04M1_47180 PF00990 Diguanylate cyclase, GGDEF domain K04M1_47210 PF00990 Diguanylate cyclase, GGDEF domain K04M1_47210 PF05230 MASE2 domain K04M1_47240 PF01773 Na+ dependent nucleoside transporter N-terminus K04M1_47240 PF07662 Na+ dependent nucleoside transporter C-terminus K04M1_47240 PF07670 Nucleoside recognition K04M1_47270 PF01212 Beta-eliminating lyase K04M1_47290 PF03116 NQR2, RnfD, RnfE family K04M1_47300 PF01654 Cytochrome bd terminal oxidase subunit I K04M1_47310 PF02322 Cytochrome bd terminal oxidase subunit II K04M1_47340 PF00182 Chitinase class I K04M1_47350 PF01266 FAD dependent oxidoreductase K04M1_47390 PF05525 Branched-chain amino acid transport protein K04M1_47400 PF00990 Diguanylate cyclase, GGDEF domain K04M1_47410 PF00158 Sigma-54 interaction domain K04M1_47410 PF02954 Bacterial regulatory protein, Fis family K04M1_47410 PF00072 Response regulator receiver domain K04M1_47420 PF00512 His Kinase A (phospho-acceptor) domain K04M1_47420 PF08448 PAS fold K04M1_47420 PF00072 Response regulator receiver domain K04M1_47420 PF13426 PAS domain K04M1_47420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_47430 PF00232 Glycosyl hydrolase family 1 K04M1_47460 PF03466 LysR substrate binding domain K04M1_47460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_47480 PF12706 Beta-lactamase superfamily domain K04M1_47500 PF18030 RimK PreATP-grasp domain K04M1_47500 PF08443 RimK-like ATP-grasp domain K04M1_47510 PF08443 RimK-like ATP-grasp domain K04M1_47510 PF18030 RimK PreATP-grasp domain K04M1_47520 PF00753 Metallo-beta-lactamase superfamily K04M1_47530 PF17944 Arginine decarboxylase C-terminal helical extension K04M1_47530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K04M1_47530 PF17810 Arginine decarboxylase helical bundle domain K04M1_47540 PF00491 Arginase family K04M1_47550 PF07690 Major Facilitator Superfamily K04M1_47560 PF00326 Prolyl oligopeptidase family K04M1_47560 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K04M1_47590 PF00950 ABC 3 transport family K04M1_47600 PF00005 ABC transporter K04M1_47610 PF01297 Zinc-uptake complex component A periplasmic K04M1_47690 PF02472 Biopolymer transport protein ExbD/TolR K04M1_47700 PF01618 MotA/TolQ/ExbB proton channel family K04M1_47710 PF01618 MotA/TolQ/ExbB proton channel family K04M1_47730 PF00593 TonB dependent receptor K04M1_47730 PF07715 TonB-dependent Receptor Plug Domain K04M1_47740 PF00512 His Kinase A (phospho-acceptor) domain K04M1_47740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_47740 PF00672 HAMP domain K04M1_47740 PF16750 Sensor domain of 2-component histidine kinase K04M1_47750 PF00486 Transcriptional regulatory protein, C terminal K04M1_47750 PF00072 Response regulator receiver domain K04M1_47760 PF03009 Glycerophosphoryl diester phosphodiesterase family K04M1_47780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K04M1_47780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M1_47790 PF10928 Protein of unknown function (DUF2810) K04M1_47900 PF04013 Putative SAM-dependent RNA methyltransferase K04M1_47910 PF01523 Putative modulator of DNA gyrase K04M1_47920 PF01523 Putative modulator of DNA gyrase K04M1_47930 PF08543 Phosphomethylpyrimidine kinase K04M1_47940 PF00005 ABC transporter K04M1_47950 PF00528 Binding-protein-dependent transport system inner membrane component K04M1_47960 PF09084 NMT1/THI5 like K04M1_47970 PF03070 TENA/THI-4/PQQC family K04M1_47980 PF02110 Hydroxyethylthiazole kinase family K04M1_47990 PF02581 Thiamine monophosphate synthase K04M1_48010 PF18364 Molybdopterin oxidoreductase N-terminal domain K04M1_48010 PF01568 Molydopterin dinucleotide binding domain K04M1_48010 PF00384 Molybdopterin oxidoreductase K04M1_48020 PF03264 NapC/NirT cytochrome c family, N-terminal region K04M1_48030 PF13302 Acetyltransferase (GNAT) domain K04M1_48070 PF00583 Acetyltransferase (GNAT) family K04M1_48110 PF00155 Aminotransferase class I and II K04M1_48110 PF00392 Bacterial regulatory proteins, gntR family K04M1_48120 PF02595 Glycerate kinase family K04M1_48130 PF02447 GntP family permease K04M1_48140 PF13556 PucR C-terminal helix-turn-helix domain K04M1_48140 PF17853 GGDEF-like domain K04M1_48140 PF05651 Putative sugar diacid recognition K04M1_48210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M1_48220 PF12706 Beta-lactamase superfamily domain K04M1_48250 PF07690 Major Facilitator Superfamily K04M1_48260 PF13533 Biotin-lipoyl like K04M1_48270 PF03922 OmpW family K04M1_48290 PF13599 Pentapeptide repeats (9 copies) K04M1_48330 PF01037 Lrp/AsnC ligand binding domain K04M1_48340 PF01810 LysE type translocator K04M1_48350 PF08021 Siderophore-interacting FAD-binding domain K04M1_48350 PF04954 Siderophore-interacting protein K04M1_48360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_48360 PF03466 LysR substrate binding domain K04M1_48370 PF00797 N-acetyltransferase K04M1_48380 PF08240 Alcohol dehydrogenase GroES-like domain K04M1_48380 PF00107 Zinc-binding dehydrogenase K04M1_48390 PF00756 Putative esterase K04M1_48430 PF17152 Periplasmic sensor domain K04M1_48430 PF00990 Diguanylate cyclase, GGDEF domain K04M1_48460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_48460 PF03466 LysR substrate binding domain K04M1_48490 PF00849 RNA pseudouridylate synthase K04M1_48500 PF01554 MatE K04M1_48510 PF00563 EAL domain K04M1_48510 PF00990 Diguanylate cyclase, GGDEF domain K04M1_48530 PF06865 Pyrimidine/purine nucleoside phosphorylase K04M1_48550 PF00704 Glycosyl hydrolases family 18 K04M1_48550 PF08329 Chitinase A, N-terminal domain K04M1_48560 PF12697 Alpha/beta hydrolase family K04M1_48600 PF03600 Citrate transporter K04M1_48620 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 K04M1_48640 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K04M1_48640 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K04M1_48650 PF12833 Helix-turn-helix domain K04M1_48650 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K04M1_48650 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K04M1_48650 PF02805 Metal binding domain of Ada K04M1_48670 PF07681 DoxX K04M1_48680 PF02678 Pirin K04M1_48680 PF17954 Quercetinase C-terminal cupin domain K04M1_48690 PF03466 LysR substrate binding domain K04M1_48690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M1_48720 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K04M1_48740 PF03616 Sodium/glutamate symporter K04M1_48750 PF00155 Aminotransferase class I and II K04M1_48750 PF00392 Bacterial regulatory proteins, gntR family K04M1_48760 PF00005 ABC transporter K04M1_48780 PF03616 Sodium/glutamate symporter K04M1_48810 PF00672 HAMP domain K04M1_48810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M1_48810 PF17200 Single Cache domain 2 K04M1_48820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K04M1_48840 PF00072 Response regulator receiver domain K04M1_48840 PF04397 LytTr DNA-binding domain K04M1_48850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_48850 PF13492 GAF domain K04M1_48850 PF07694 5TMR of 5TMR-LYT K04M1_48850 PF06580 Histidine kinase K04M1_48890 PF00005 ABC transporter K04M1_48910 PF01098 Cell cycle protein K04M1_48920 PF01709 Transcriptional regulator K04M1_48940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M1_48940 PF00512 His Kinase A (phospho-acceptor) domain K04M1_48940 PF17149 Periplasmic sensor domain found in signal transduction proteins K04M1_48940 PF00072 Response regulator receiver domain K04M1_48940 PF00672 HAMP domain K04M1_48940 PF01627 Hpt domain K04M1_48960 PF08719 Domain of unknown function (DUF1768) K04M1_48960 PF00925 GTP cyclohydrolase II K04M1_48980 PF00005 ABC transporter K04M1_48980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_48990 PF00005 ABC transporter K04M1_48990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M1_49570 PF05016 ParE toxin of type II toxin-antitoxin system, parDE K04M1_49940 PF08275 DNA primase catalytic core, N-terminal domain K04M1_49940 PF01807 CHC2 zinc finger K04M1_49940 PF13662 Toprim domain K04M1_50170 PF08272 Topoisomerase I zinc-ribbon-like K04M1_50170 PF01131 DNA topoisomerase K04M1_50170 PF01751 Toprim domain K04M1_50170 PF01396 Topoisomerase DNA binding C4 zinc finger K04M1_50280 PF00437 Type II/IV secretion system protein K04M1_50380 PF00437 Type II/IV secretion system protein K04M1_50380 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K04M1_50400 PF07963 Prokaryotic N-terminal methylation motif K04M1_50400 PF00114 Pilin (bacterial filament) K04M1_50670 PF00816 H-NS histone family K04M1_50750 PF03707 Bacterial signalling protein N terminal repeat K04M1_50750 PF00563 EAL domain K04M1_50750 PF00990 Diguanylate cyclase, GGDEF domain K04M1_51220 PF01145 SPFH domain / Band 7 family K04M1_51230 PF01145 SPFH domain / Band 7 family K04M1_51260 PF11799 impB/mucB/samB family C-terminal domain K04M1_51260 PF13438 Domain of unknown function (DUF4113) K04M1_51260 PF00817 impB/mucB/samB family K04M1_51300 PF07669 Eco57I restriction-modification methylase K04M1_51340 PF00563 EAL domain K04M1_51340 PF01590 GAF domain K04M1_51340 PF00360 Phytochrome region K04M1_51340 PF00990 Diguanylate cyclase, GGDEF domain K04M1_51640 PF13662 Toprim domain K04M1_51640 PF08275 DNA primase catalytic core, N-terminal domain K04M1_51640 PF01807 CHC2 zinc finger K04M1_51880 PF00580 UvrD/REP helicase N-terminal domain K04M1_51880 PF13361 UvrD-like helicase C-terminal domain K04M1_52430 PF05707 Zonular occludens toxin (Zot)