locus-tag class description K04M3_00010 PF00308 Bacterial dnaA protein K04M3_00010 PF11638 DnaA N-terminal domain K04M3_00010 PF08299 Bacterial dnaA protein helix-turn-helix K04M3_00020 PF02767 DNA polymerase III beta subunit, central domain K04M3_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain K04M3_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain K04M3_00030 PF02463 RecF/RecN/SMC N terminal domain K04M3_00040 PF00986 DNA gyrase B subunit, carboxyl terminus K04M3_00040 PF18053 DNA gyrase B subunit insert domain K04M3_00040 PF00204 DNA gyrase B K04M3_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_00040 PF01751 Toprim domain K04M3_00070 PF00011 Hsp20/alpha crystallin family K04M3_00080 PF00155 Aminotransferase class I and II K04M3_00090 PF00128 Alpha amylase, catalytic domain K04M3_00100 PF02092 Glycyl-tRNA synthetase beta subunit K04M3_00100 PF05746 DALR anticodon binding domain K04M3_00110 PF02091 Glycyl-tRNA synthetase alpha subunit K04M3_00120 PF01169 Uncharacterized protein family UPF0016 K04M3_00140 PF01206 Sulfurtransferase TusA K04M3_00160 PF03466 LysR substrate binding domain K04M3_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_00170 PF00107 Zinc-binding dehydrogenase K04M3_00170 PF08240 Alcohol dehydrogenase GroES-like domain K04M3_00180 PF02803 Thiolase, C-terminal domain K04M3_00180 PF00108 Thiolase, N-terminal domain K04M3_00190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K04M3_00190 PF00378 Enoyl-CoA hydratase/isomerase K04M3_00190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K04M3_00200 PF01205 Uncharacterized protein family UPF0029 K04M3_00200 PF09186 Domain of unknown function (DUF1949) K04M3_00210 PF02386 Cation transport protein K04M3_00220 PF12724 Flavodoxin domain K04M3_00290 PF03466 LysR substrate binding domain K04M3_00290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_00300 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain K04M3_00300 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain K04M3_00310 PF04380 Membrane fusogenic activity K04M3_00320 PF00873 AcrB/AcrD/AcrF family K04M3_00330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_00340 PF00440 Bacterial regulatory proteins, tetR family K04M3_00340 PF16295 Tetracyclin repressor-like, C-terminal domain K04M3_00350 PF00580 UvrD/REP helicase N-terminal domain K04M3_00350 PF13361 UvrD-like helicase C-terminal domain K04M3_00360 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K04M3_00420 PF13419 Haloacid dehalogenase-like hydrolase K04M3_00430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_00430 PF00005 ABC transporter K04M3_00440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_00460 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M3_00460 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_00480 PF00356 Bacterial regulatory proteins, lacI family K04M3_00480 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K04M3_00490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_00490 PF03466 LysR substrate binding domain K04M3_00500 PF00893 Small Multidrug Resistance protein K04M3_00510 PF00893 Small Multidrug Resistance protein K04M3_00520 PF00920 Dehydratase family K04M3_00530 PF01202 Shikimate kinase K04M3_00540 PF02447 GntP family permease K04M3_00550 PF01081 KDPG and KHG aldolase K04M3_00560 PF01048 Phosphorylase superfamily K04M3_00570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_00570 PF03466 LysR substrate binding domain K04M3_00580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M3_00580 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_00590 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ K04M3_00600 PF01432 Peptidase family M3 K04M3_00610 PF01037 Lrp/AsnC ligand binding domain K04M3_00620 PF08448 PAS fold K04M3_00620 PF00990 Diguanylate cyclase, GGDEF domain K04M3_00620 PF00563 EAL domain K04M3_00630 PF04445 Putative SAM-dependent methyltransferase K04M3_00650 PF00892 EamA-like transporter family K04M3_00660 PF00582 Universal stress protein family K04M3_00670 PF00210 Ferritin-like domain K04M3_00680 PF10625 Universal stress protein B (UspB) K04M3_00700 PF00158 Sigma-54 interaction domain K04M3_00700 PF02954 Bacterial regulatory protein, Fis family K04M3_00700 PF01590 GAF domain K04M3_00750 PF00781 Diacylglycerol kinase catalytic domain K04M3_00810 PF01594 AI-2E family transporter K04M3_00820 PF03707 Bacterial signalling protein N terminal repeat K04M3_00820 PF00990 Diguanylate cyclase, GGDEF domain K04M3_00820 PF00563 EAL domain K04M3_00840 PF02646 RmuC family K04M3_00850 PF01209 ubiE/COQ5 methyltransferase family K04M3_00860 PF02036 SCP-2 sterol transfer family K04M3_00870 PF03109 ABC1 family K04M3_00880 PF02416 mttA/Hcf106 family K04M3_00890 PF02416 mttA/Hcf106 family K04M3_00900 PF00902 Sec-independent protein translocase protein (TatC) K04M3_00910 PF01026 TatD related DNase K04M3_00920 PF00490 Delta-aminolevulinic acid dehydratase K04M3_00930 PF00583 Acetyltransferase (GNAT) family K04M3_00950 PF01367 5'-3' exonuclease, C-terminal SAM fold K04M3_00950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K04M3_00950 PF01612 3'-5' exonuclease K04M3_00950 PF00476 DNA polymerase family A K04M3_00960 PF01926 50S ribosome-binding GTPase K04M3_00970 PF00034 Cytochrome c K04M3_00990 PF04220 Der GTPase activator (YihI) K04M3_01000 PF10675 Protein of unknown function (DUF2489) K04M3_01010 PF04055 Radical SAM superfamily K04M3_01010 PF06969 HemN C-terminal domain K04M3_01020 PF00962 Adenosine/AMP deaminase K04M3_01030 PF03707 Bacterial signalling protein N terminal repeat K04M3_01030 PF00990 Diguanylate cyclase, GGDEF domain K04M3_01030 PF00563 EAL domain K04M3_01040 PF00072 Response regulator receiver domain K04M3_01040 PF02954 Bacterial regulatory protein, Fis family K04M3_01040 PF00158 Sigma-54 interaction domain K04M3_01050 PF00989 PAS fold K04M3_01050 PF00512 His Kinase A (phospho-acceptor) domain K04M3_01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_01070 PF03951 Glutamine synthetase, beta-Grasp domain K04M3_01070 PF00120 Glutamine synthetase, catalytic domain K04M3_01090 PF08299 Bacterial dnaA protein helix-turn-helix K04M3_01090 PF00308 Bacterial dnaA protein K04M3_01110 PF03631 Virulence factor BrkB K04M3_01120 PF02580 D-Tyr-tRNA(Tyr) deacylase K04M3_01130 PF09500 Putative thioesterase (yiiD_Cterm) K04M3_01130 PF00583 Acetyltransferase (GNAT) family K04M3_01150 PF01293 Phosphoenolpyruvate carboxykinase K04M3_01160 PF01430 Hsp33 protein K04M3_01170 PF01479 S4 domain K04M3_01180 PF11356 Type II secretion system protein C K04M3_01190 PF03958 Bacterial type II/III secretion system short domain K04M3_01190 PF00263 Bacterial type II and III secretion system protein K04M3_01200 PF00437 Type II/IV secretion system protein K04M3_01210 PF00482 Type II secretion system (T2SS), protein F K04M3_01220 PF07963 Prokaryotic N-terminal methylation motif K04M3_01220 PF08334 Type II secretion system (T2SS), protein G K04M3_01230 PF12019 Type II transport protein GspH K04M3_01240 PF02501 Type II secretion system (T2SS), protein I K04M3_01240 PF07963 Prokaryotic N-terminal methylation motif K04M3_01250 PF07963 Prokaryotic N-terminal methylation motif K04M3_01250 PF11612 Type II secretion system (T2SS), protein J K04M3_01260 PF03934 Type II secretion system (T2SS), protein K K04M3_01270 PF05134 Type II secretion system (T2SS), protein L K04M3_01270 PF12693 GspL periplasmic domain K04M3_01280 PF04612 Type II secretion system (T2SS), protein M K04M3_01290 PF01203 Type II secretion system (T2SS), protein N K04M3_01300 PF00459 Inositol monophosphatase family K04M3_01310 PF00293 NUDIX domain K04M3_01320 PF01106 NifU-like domain K04M3_01320 PF01521 Iron-sulphur cluster biosynthesis K04M3_01330 PF00156 Phosphoribosyl transferase domain K04M3_01340 PF00561 alpha/beta hydrolase fold K04M3_01360 PF00575 S1 RNA binding domain K04M3_01360 PF17674 HHH domain K04M3_01360 PF16921 Tex protein YqgF-like domain K04M3_01360 PF09371 Tex-like protein N-terminal domain K04M3_01380 PF01272 Transcription elongation factor, GreA/GreB, C-term K04M3_01380 PF03449 Transcription elongation factor, N-terminal K04M3_01400 PF00072 Response regulator receiver domain K04M3_01400 PF00486 Transcriptional regulatory protein, C terminal K04M3_01410 PF00512 His Kinase A (phospho-acceptor) domain K04M3_01410 PF00672 HAMP domain K04M3_01410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_01420 PF00860 Permease family K04M3_01430 PF17191 RecG wedge domain K04M3_01430 PF00271 Helicase conserved C-terminal domain K04M3_01430 PF00270 DEAD/DEAH box helicase K04M3_01440 PF00588 SpoU rRNA Methylase family K04M3_01440 PF12105 SpoU, rRNA methylase, C-terminal K04M3_01450 PF02824 TGS domain K04M3_01450 PF13291 ACT domain K04M3_01450 PF04607 Region found in RelA / SpoT proteins K04M3_01460 PF01192 RNA polymerase Rpb6 K04M3_01470 PF00625 Guanylate kinase K04M3_01500 PF02472 Biopolymer transport protein ExbD/TolR K04M3_01510 PF01618 MotA/TolQ/ExbB proton channel family K04M3_01540 PF00593 TonB dependent receptor K04M3_01540 PF07715 TonB-dependent Receptor Plug Domain K04M3_01550 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_01560 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_01560 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M3_01570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_01580 PF00005 ABC transporter K04M3_01580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_01590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_01590 PF00005 ABC transporter K04M3_01610 PF08340 Domain of unknown function (DUF1732) K04M3_01610 PF03755 YicC-like family, N-terminal region K04M3_01620 PF01138 3' exoribonuclease family, domain 1 K04M3_01620 PF03725 3' exoribonuclease family, domain 2 K04M3_01630 PF00156 Phosphoribosyl transferase domain K04M3_01640 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M3_01650 PF00440 Bacterial regulatory proteins, tetR family K04M3_01660 PF02441 Flavoprotein K04M3_01660 PF04127 DNA / pantothenate metabolism flavoprotein K04M3_01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_01670 PF00672 HAMP domain K04M3_01670 PF17200 Single Cache domain 2 K04M3_01680 PF04002 RadC-like JAB domain K04M3_01690 PF00830 Ribosomal L28 family K04M3_01700 PF00471 Ribosomal protein L33 K04M3_01720 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain K04M3_01720 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain K04M3_01720 PF06827 Zinc finger found in FPG and IleRS K04M3_01730 PF01467 Cytidylyltransferase-like K04M3_01740 PF05686 Glycosyl transferase family 90 K04M3_01750 PF00535 Glycosyl transferase family 2 K04M3_01760 PF00535 Glycosyl transferase family 2 K04M3_01770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K04M3_01780 PF01219 Prokaryotic diacylglycerol kinase K04M3_01800 PF16363 GDP-mannose 4,6 dehydratase K04M3_01810 PF00483 Nucleotidyl transferase K04M3_01820 PF05523 WxcM-like, C-terminal K04M3_01840 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K04M3_01890 PF00682 HMGL-like K04M3_01890 PF07836 DmpG-like communication domain K04M3_01900 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K04M3_01910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K04M3_01930 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M3_01960 PF01370 NAD dependent epimerase/dehydratase family K04M3_01970 PF06082 Exopolysaccharide biosynthesis protein YbjH K04M3_02020 PF10531 SLBB domain K04M3_02020 PF02563 Polysaccharide biosynthesis/export protein K04M3_02020 PF18412 Outer-membrane lipoprotein Wza C-terminal domain K04M3_02070 PF13439 Glycosyltransferase Family 4 K04M3_02070 PF00534 Glycosyl transferases group 1 K04M3_02090 PF13439 Glycosyltransferase Family 4 K04M3_02090 PF00534 Glycosyl transferases group 1 K04M3_02100 PF13439 Glycosyltransferase Family 4 K04M3_02100 PF00534 Glycosyl transferases group 1 K04M3_02110 PF02397 Bacterial sugar transferase K04M3_02120 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain K04M3_02120 PF00753 Metallo-beta-lactamase superfamily K04M3_02120 PF10996 Beta-Casp domain K04M3_02130 PF00953 Glycosyl transferase family 4 K04M3_02180 PF00535 Glycosyl transferase family 2 K04M3_02190 PF00535 Glycosyl transferase family 2 K04M3_02210 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain K04M3_02210 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain K04M3_02210 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K04M3_02220 PF01370 NAD dependent epimerase/dehydratase family K04M3_02230 PF00483 Nucleotidyl transferase K04M3_02240 PF00121 Triosephosphate isomerase K04M3_02280 PF08220 DeoR-like helix-turn-helix domain K04M3_02280 PF00455 DeoR C terminal sensor domain K04M3_02290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K04M3_02300 PF06005 Cell division protein ZapB K04M3_02310 PF03737 Aldolase/RraA K04M3_02320 PF01040 UbiA prenyltransferase family K04M3_02380 PF04002 RadC-like JAB domain K04M3_02410 PF00072 Response regulator receiver domain K04M3_02410 PF12431 Transcriptional regulator K04M3_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_02420 PF17203 Single cache domain 3 K04M3_02430 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit K04M3_02440 PF02436 Conserved carboxylase domain K04M3_02440 PF00364 Biotin-requiring enzyme K04M3_02440 PF00682 HMGL-like K04M3_02450 PF04277 Oxaloacetate decarboxylase, gamma chain K04M3_02460 PF03390 2-hydroxycarboxylate transporter family K04M3_02470 PF08218 Citrate lyase ligase C-terminal domain K04M3_02480 PF06857 Malonate decarboxylase delta subunit (MdcD) K04M3_02490 PF03328 HpcH/HpaI aldolase/citrate lyase family K04M3_02500 PF04223 Citrate lyase, alpha subunit (CitF) K04M3_02510 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase K04M3_02520 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase K04M3_02550 PF00004 ATPase family associated with various cellular activities (AAA) K04M3_02550 PF07724 AAA domain (Cdc48 subfamily) K04M3_02560 PF00227 Proteasome subunit K04M3_02590 PF00356 Bacterial regulatory proteins, lacI family K04M3_02600 PF17764 3′ DNA-binding domain (3′BD) K04M3_02600 PF18074 Primosomal protein N C-terminal domain K04M3_02600 PF00270 DEAD/DEAH box helicase K04M3_02600 PF18319 PriA DNA helicase Cys-rich region (CRR) domain K04M3_02600 PF00271 Helicase conserved C-terminal domain K04M3_02610 PF01197 Ribosomal protein L31 K04M3_02620 PF00338 Ribosomal protein S10p/S20e K04M3_02630 PF00297 Ribosomal protein L3 K04M3_02640 PF00573 Ribosomal protein L4/L1 family K04M3_02650 PF00276 Ribosomal protein L23 K04M3_02660 PF00181 Ribosomal Proteins L2, RNA binding domain K04M3_02660 PF03947 Ribosomal Proteins L2, C-terminal domain K04M3_02670 PF00203 Ribosomal protein S19 K04M3_02680 PF00237 Ribosomal protein L22p/L17e K04M3_02690 PF07650 KH domain K04M3_02690 PF00189 Ribosomal protein S3, C-terminal domain K04M3_02700 PF00252 Ribosomal protein L16p/L10e K04M3_02710 PF00831 Ribosomal L29 protein K04M3_02720 PF00366 Ribosomal protein S17 K04M3_02730 PF00238 Ribosomal protein L14p/L23e K04M3_02740 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 K04M3_02740 PF00467 KOW motif K04M3_02750 PF00673 ribosomal L5P family C-terminus K04M3_02750 PF00281 Ribosomal protein L5 K04M3_02760 PF00253 Ribosomal protein S14p/S29e K04M3_02770 PF00410 Ribosomal protein S8 K04M3_02780 PF00347 Ribosomal protein L6 K04M3_02790 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast K04M3_02800 PF00333 Ribosomal protein S5, N-terminal domain K04M3_02800 PF03719 Ribosomal protein S5, C-terminal domain K04M3_02810 PF00327 Ribosomal protein L30p/L7e K04M3_02830 PF00344 SecY translocase K04M3_02840 PF00444 Ribosomal protein L36 K04M3_02850 PF00416 Ribosomal protein S13/S18 K04M3_02860 PF00411 Ribosomal protein S11 K04M3_02870 PF00163 Ribosomal protein S4/S9 N-terminal domain K04M3_02870 PF01479 S4 domain K04M3_02880 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain K04M3_02880 PF01000 RNA polymerase Rpb3/RpoA insert domain K04M3_02880 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain K04M3_02890 PF01196 Ribosomal protein L17 K04M3_02910 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K04M3_02910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M3_02930 PF13673 Acetyltransferase (GNAT) domain K04M3_02940 PF03880 DbpA RNA binding domain K04M3_02940 PF00270 DEAD/DEAH box helicase K04M3_02940 PF00271 Helicase conserved C-terminal domain K04M3_02960 PF02872 5'-nucleotidase, C-terminal domain K04M3_02960 PF00149 Calcineurin-like phosphoesterase K04M3_02970 PF10414 Sirohaem synthase dimerisation region K04M3_02970 PF14824 Sirohaem biosynthesis protein central K04M3_02970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M3_02980 PF01507 Phosphoadenosine phosphosulfate reductase family K04M3_02990 PF00009 Elongation factor Tu GTP binding domain K04M3_03000 PF03600 Citrate transporter K04M3_03000 PF02080 TrkA-C domain K04M3_03060 PF00005 ABC transporter K04M3_03080 PF10795 Protein of unknown function (DUF2607) K04M3_03090 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) K04M3_03100 PF06526 Protein of unknown function (DUF1107) K04M3_03110 PF01625 Peptide methionine sulfoxide reductase K04M3_03120 PF17243 POTRA domain TamA domain 1 K04M3_03120 PF01103 Surface antigen K04M3_03130 PF04357 TamB, inner membrane protein subunit of TAM complex K04M3_03140 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like K04M3_03160 PF00719 Inorganic pyrophosphatase K04M3_03170 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain K04M3_03180 PF08245 Mur ligase middle domain K04M3_03180 PF01225 Mur ligase family, catalytic domain K04M3_03180 PF02875 Mur ligase family, glutamate ligase domain K04M3_03190 PF02441 Flavoprotein K04M3_03210 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_03220 PF00005 ABC transporter K04M3_03230 PF03466 LysR substrate binding domain K04M3_03230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_03240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M3_03270 PF16868 NMT1-like family K04M3_03280 PF02863 Arginine repressor, C-terminal domain K04M3_03280 PF01316 Arginine repressor, DNA binding domain K04M3_03290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain K04M3_03290 PF00056 lactate/malate dehydrogenase, NAD binding domain K04M3_03310 PF00348 Polyprenyl synthetase K04M3_03320 PF00829 Ribosomal prokaryotic L21 protein K04M3_03330 PF01016 Ribosomal L27 protein K04M3_03340 PF01018 GTP1/OBG K04M3_03340 PF01926 50S ribosome-binding GTPase K04M3_03350 PF06738 Putative threonine/serine exporter K04M3_03360 PF12821 Threonine/Serine exporter, ThrE K04M3_03370 PF00186 Dihydrofolate reductase K04M3_03380 PF00149 Calcineurin-like phosphoesterase K04M3_03390 PF04379 ApaG domain K04M3_03400 PF00398 Ribosomal RNA adenine dimethylase K04M3_03410 PF04166 Pyridoxal phosphate biosynthetic protein PdxA K04M3_03420 PF09312 SurA N-terminal domain K04M3_03430 PF04453 LPS transport system D K04M3_03430 PF03968 OstA-like protein K04M3_03440 PF00226 DnaJ domain K04M3_03440 PF05099 Tellurite resistance protein TerB K04M3_03460 PF00694 Aconitase C-terminal domain K04M3_03470 PF00330 Aconitase family (aconitate hydratase) K04M3_03480 PF00180 Isocitrate/isopropylmalate dehydrogenase K04M3_03490 PF08502 LeuA allosteric (dimerisation) domain K04M3_03490 PF00682 HMGL-like K04M3_03510 PF01569 PAP2 superfamily K04M3_03530 PF03466 LysR substrate binding domain K04M3_03530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_03540 PF00501 AMP-binding enzyme K04M3_03550 PF00205 Thiamine pyrophosphate enzyme, central domain K04M3_03550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K04M3_03550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K04M3_03560 PF10369 Small subunit of acetolactate synthase K04M3_03570 PF00990 Diguanylate cyclase, GGDEF domain K04M3_03570 PF07694 5TMR of 5TMR-LYT K04M3_03590 PF00224 Pyruvate kinase, barrel domain K04M3_03590 PF02887 Pyruvate kinase, alpha/beta domain K04M3_03600 PF00455 DeoR C terminal sensor domain K04M3_03600 PF08220 DeoR-like helix-turn-helix domain K04M3_03610 PF01380 SIS domain K04M3_03620 PF00465 Iron-containing alcohol dehydrogenase K04M3_03630 PF02733 Dak1 domain K04M3_03640 PF02734 DAK2 domain K04M3_03650 PF05524 PEP-utilising enzyme, N-terminal K04M3_03650 PF00391 PEP-utilising enzyme, mobile domain K04M3_03650 PF02896 PEP-utilising enzyme, TIM barrel domain K04M3_03660 PF00989 PAS fold K04M3_03660 PF02954 Bacterial regulatory protein, Fis family K04M3_03660 PF00158 Sigma-54 interaction domain K04M3_03670 PF05068 Mannitol repressor K04M3_03680 PF08125 Mannitol dehydrogenase C-terminal domain K04M3_03680 PF01232 Mannitol dehydrogenase Rossmann domain K04M3_03690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K04M3_03690 PF02378 Phosphotransferase system, EIIC K04M3_03690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K04M3_03730 PF03180 NLPA lipoprotein K04M3_03750 PF04539 Sigma-70 region 3 K04M3_03750 PF04546 Sigma-70, non-essential region K04M3_03750 PF04545 Sigma-70, region 4 K04M3_03750 PF04542 Sigma-70 region 2 K04M3_03750 PF00140 Sigma-70 factor, region 1.2 K04M3_03750 PF03979 Sigma-70 factor, region 1.1 K04M3_03760 PF01807 CHC2 zinc finger K04M3_03760 PF10410 DnaB-helicase binding domain of primase K04M3_03760 PF08278 DNA primase DnaG DnaB-binding K04M3_03760 PF08275 DNA primase catalytic core, N-terminal domain K04M3_03770 PF09424 Yqey-like protein K04M3_03780 PF01165 Ribosomal protein S21 K04M3_03790 PF00814 Glycoprotease family K04M3_03800 PF00561 alpha/beta hydrolase fold K04M3_03810 PF02660 Glycerol-3-phosphate acyltransferase K04M3_03820 PF02152 Dihydroneopterin aldolase K04M3_03830 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K04M3_03840 PF02673 Bacitracin resistance protein BacA K04M3_03850 PF01743 Poly A polymerase head domain K04M3_03850 PF12627 Probable RNA and SrmB- binding site of polymerase A K04M3_03850 PF01966 HD domain K04M3_03860 PF01471 Putative peptidoglycan binding domain K04M3_03860 PF13401 AAA domain K04M3_03890 PF08239 Bacterial SH3 domain K04M3_03900 PF01384 Phosphate transporter family K04M3_03910 PF01865 Protein of unknown function DUF47 K04M3_03920 PF01928 CYTH domain K04M3_03940 PF02743 Cache domain K04M3_03940 PF00672 HAMP domain K04M3_03940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_03950 PF08335 GlnD PII-uridylyltransferase K04M3_03950 PF03710 Glutamate-ammonia ligase adenylyltransferase K04M3_03960 PF00294 pfkB family carbohydrate kinase K04M3_03960 PF01467 Cytidylyltransferase-like K04M3_03970 PF02321 Outer membrane efflux protein K04M3_03980 PF00293 NUDIX domain K04M3_03990 PF06853 Protein of unknown function (DUF1249) K04M3_04000 PF00149 Calcineurin-like phosphoesterase K04M3_04010 PF05728 Uncharacterised protein family (UPF0227) K04M3_04020 PF00204 DNA gyrase B K04M3_04020 PF00986 DNA gyrase B subunit, carboxyl terminus K04M3_04020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_04020 PF01751 Toprim domain K04M3_04030 PF00521 DNA gyrase/topoisomerase IV, subunit A K04M3_04030 PF03989 DNA gyrase C-terminal domain, beta-propeller K04M3_04040 PF13180 PDZ domain K04M3_04050 PF00595 PDZ domain K04M3_04060 PF06295 Protein of unknown function (DUF1043) K04M3_04070 PF03969 AFG1-like ATPase K04M3_04080 PF00572 Ribosomal protein L13 K04M3_04090 PF00380 Ribosomal protein S9/S16 K04M3_04100 PF00355 Rieske [2Fe-2S] domain K04M3_04100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal K04M3_04110 PF00033 Cytochrome b/b6/petB K04M3_04110 PF00032 Cytochrome b(C-terminal)/b6/petD K04M3_04120 PF02167 Cytochrome C1 family K04M3_04130 PF02798 Glutathione S-transferase, N-terminal domain K04M3_04130 PF00043 Glutathione S-transferase, C-terminal domain K04M3_04140 PF04386 Stringent starvation protein B K04M3_04170 PF04972 BON domain K04M3_04180 PF13580 SIS domain K04M3_04190 PF02021 Uncharacterised protein family UPF0102 K04M3_04200 PF04348 LppC putative lipoprotein K04M3_04210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M3_04220 PF01795 MraW methylase family K04M3_04230 PF04999 Cell division protein FtsL K04M3_04240 PF00905 Penicillin binding protein transpeptidase domain K04M3_04240 PF03717 Penicillin-binding Protein dimerisation domain K04M3_04250 PF02875 Mur ligase family, glutamate ligase domain K04M3_04250 PF08245 Mur ligase middle domain K04M3_04250 PF01225 Mur ligase family, catalytic domain K04M3_04260 PF01225 Mur ligase family, catalytic domain K04M3_04260 PF02875 Mur ligase family, glutamate ligase domain K04M3_04260 PF08245 Mur ligase middle domain K04M3_04270 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 K04M3_04270 PF00953 Glycosyl transferase family 4 K04M3_04280 PF08245 Mur ligase middle domain K04M3_04280 PF02875 Mur ligase family, glutamate ligase domain K04M3_04290 PF01098 Cell cycle protein K04M3_04300 PF04101 Glycosyltransferase family 28 C-terminal domain K04M3_04300 PF03033 Glycosyltransferase family 28 N-terminal domain K04M3_04310 PF08245 Mur ligase middle domain K04M3_04310 PF02875 Mur ligase family, glutamate ligase domain K04M3_04310 PF01225 Mur ligase family, catalytic domain K04M3_04320 PF03799 Cell division protein FtsQ K04M3_04320 PF08478 POTRA domain, FtsQ-type K04M3_04330 PF02491 SHS2 domain inserted in FTSA K04M3_04340 PF12327 FtsZ family, C-terminal domain K04M3_04340 PF00091 Tubulin/FtsZ family, GTPase domain K04M3_04350 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase K04M3_04370 PF07516 SecA Wing and Scaffold domain K04M3_04370 PF01043 SecA preprotein cross-linking domain K04M3_04370 PF07517 SecA DEAD-like domain K04M3_04370 PF02810 SEC-C motif K04M3_04380 PF00293 NUDIX domain K04M3_04390 PF01113 Dihydrodipicolinate reductase, N-terminus K04M3_04390 PF05173 Dihydrodipicolinate reductase, C-terminus K04M3_04400 PF00117 Glutamine amidotransferase class-I K04M3_04400 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain K04M3_04410 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K04M3_04410 PF02142 MGS-like domain K04M3_04410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K04M3_04440 PF01925 Sulfite exporter TauE/SafE K04M3_04450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_04450 PF03466 LysR substrate binding domain K04M3_04460 PF03458 UPF0126 domain K04M3_04470 PF01497 Periplasmic binding protein K04M3_04480 PF03186 CobD/Cbib protein K04M3_04480 PF17113 Regulatory signalling modulator protein AmpE K04M3_04490 PF01048 Phosphorylase superfamily K04M3_04510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K04M3_04510 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_04520 PF04898 Glutamate synthase central domain K04M3_04520 PF00310 Glutamine amidotransferases class-II K04M3_04520 PF01645 Conserved region in glutamate synthase K04M3_04520 PF01493 GXGXG motif K04M3_04530 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_04530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K04M3_04540 PF00310 Glutamine amidotransferases class-II K04M3_04540 PF01493 GXGXG motif K04M3_04540 PF01645 Conserved region in glutamate synthase K04M3_04540 PF04898 Glutamate synthase central domain K04M3_04550 PF04055 Radical SAM superfamily K04M3_04550 PF16199 Radical_SAM C-terminal domain K04M3_04560 PF00563 EAL domain K04M3_04560 PF00990 Diguanylate cyclase, GGDEF domain K04M3_04560 PF01590 GAF domain K04M3_04560 PF00360 Phytochrome region K04M3_04570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_04570 PF18415 Histidine kinase receptor ArcB trans-membrane domain K04M3_04570 PF00512 His Kinase A (phospho-acceptor) domain K04M3_04570 PF01627 Hpt domain K04M3_04570 PF00072 Response regulator receiver domain K04M3_04570 PF00989 PAS fold K04M3_04590 PF00486 Transcriptional regulatory protein, C terminal K04M3_04590 PF00072 Response regulator receiver domain K04M3_04610 PF03737 Aldolase/RraA K04M3_04630 PF13840 ACT domain K04M3_04630 PF00696 Amino acid kinase family K04M3_04630 PF03447 Homoserine dehydrogenase, NAD binding domain K04M3_04630 PF00742 Homoserine dehydrogenase K04M3_04630 PF01842 ACT domain K04M3_04640 PF08544 GHMP kinases C terminal K04M3_04640 PF00288 GHMP kinases N terminal domain K04M3_04650 PF00291 Pyridoxal-phosphate dependent enzyme K04M3_04650 PF14821 Threonine synthase N terminus K04M3_04670 PF01228 Glycine radical K04M3_04680 PF01261 Xylose isomerase-like TIM barrel K04M3_04690 PF03167 Uracil DNA glycosylase superfamily K04M3_04720 PF01235 Sodium:alanine symporter family K04M3_04730 PF03883 Peroxide stress protein YaaA K04M3_04740 PF00270 DEAD/DEAH box helicase K04M3_04740 PF00271 Helicase conserved C-terminal domain K04M3_04750 PF05175 Methyltransferase small domain K04M3_04760 PF05525 Branched-chain amino acid transport protein K04M3_04770 PF00258 Flavodoxin K04M3_04780 PF00589 Phage integrase family K04M3_04780 PF02899 Phage integrase, N-terminal SAM-like domain K04M3_04790 PF10411 Disulfide bond isomerase protein N-terminus K04M3_04790 PF13098 Thioredoxin-like domain K04M3_04800 PF17768 RecJ OB domain K04M3_04800 PF01368 DHH family K04M3_04800 PF02272 DHHA1 domain K04M3_04810 PF03462 PCRF domain K04M3_04810 PF00472 RF-1 domain K04M3_04820 PF00152 tRNA synthetases class II (D, K and N) K04M3_04820 PF01336 OB-fold nucleic acid binding domain K04M3_04830 PF00158 Sigma-54 interaction domain K04M3_04830 PF02954 Bacterial regulatory protein, Fis family K04M3_04830 PF00072 Response regulator receiver domain K04M3_04860 PF00248 Aldo/keto reductase family K04M3_04880 PF02976 DNA mismatch repair enzyme MutH K04M3_04890 PF00293 NUDIX domain K04M3_04900 PF01590 GAF domain K04M3_04900 PF00391 PEP-utilising enzyme, mobile domain K04M3_04900 PF02896 PEP-utilising enzyme, TIM barrel domain K04M3_04900 PF05524 PEP-utilising enzyme, N-terminal K04M3_04910 PF01925 Sulfite exporter TauE/SafE K04M3_04930 PF00303 Thymidylate synthase K04M3_04950 PF02690 Na+/Pi-cotransporter K04M3_04960 PF03466 LysR substrate binding domain K04M3_04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_04970 PF01022 Bacterial regulatory protein, arsR family K04M3_04980 PF01649 Ribosomal protein S20 K04M3_04990 PF03023 Lipid II flippase MurJ K04M3_05000 PF01687 Riboflavin kinase K04M3_05000 PF06574 FAD synthetase K04M3_05010 PF00133 tRNA synthetases class I (I, L, M and V) K04M3_05010 PF08264 Anticodon-binding domain of tRNA K04M3_05010 PF06827 Zinc finger found in FPG and IleRS K04M3_05020 PF01252 Signal peptidase (SPase) II K04M3_05030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M3_05040 PF02401 LytB protein K04M3_05060 PF04397 LytTr DNA-binding domain K04M3_05060 PF00072 Response regulator receiver domain K04M3_05070 PF07694 5TMR of 5TMR-LYT K04M3_05070 PF06580 Histidine kinase K04M3_05080 PF02554 Carbon starvation protein CstA K04M3_05110 PF01380 SIS domain K04M3_05120 PF03702 Anhydro-N-acetylmuramic acid kinase K04M3_05130 PF00933 Glycosyl hydrolase family 3 N terminal domain K04M3_05140 PF00793 DAHP synthetase I family K04M3_05150 PF02153 Prephenate dehydrogenase K04M3_05150 PF01817 Chorismate mutase type II K04M3_05160 PF04225 Opacity-associated protein A LysM-like domain K04M3_05160 PF01551 Peptidase family M23 K04M3_05170 PF07238 PilZ domain K04M3_05180 PF12848 ABC transporter K04M3_05180 PF00005 ABC transporter K04M3_05190 PF01464 Transglycosylase SLT domain K04M3_05190 PF14718 Soluble lytic murein transglycosylase L domain K04M3_05200 PF01371 Trp repressor protein K04M3_05210 PF01931 Protein of unknown function DUF84 K04M3_05220 PF00800 Prephenate dehydratase K04M3_05220 PF01817 Chorismate mutase type II K04M3_05230 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K04M3_05240 PF01464 Transglycosylase SLT domain K04M3_05240 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_05250 PF13525 Outer membrane lipoprotein K04M3_05260 PF00849 RNA pseudouridylate synthase K04M3_05260 PF01479 S4 domain K04M3_05280 PF02861 Clp amino terminal domain, pathogenicity island component K04M3_05280 PF17871 AAA lid domain K04M3_05280 PF00004 ATPase family associated with various cellular activities (AAA) K04M3_05280 PF10431 C-terminal, D2-small domain, of ClpB protein K04M3_05280 PF07724 AAA domain (Cdc48 subfamily) K04M3_05390 PF03411 Penicillin-insensitive murein endopeptidase K04M3_05410 PF12838 4Fe-4S dicluster domain K04M3_05430 PF04381 Putative exonuclease, RdgC K04M3_05440 PF00072 Response regulator receiver domain K04M3_05440 PF00486 Transcriptional regulatory protein, C terminal K04M3_05450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_05450 PF00512 His Kinase A (phospho-acceptor) domain K04M3_05450 PF11808 Phosphate regulon sensor protein PhoR K04M3_05450 PF00989 PAS fold K04M3_05460 PF12849 PBP superfamily domain K04M3_05470 PF02541 Ppx/GppA phosphatase family K04M3_05480 PF17941 Polyphosphate kinase C-terminal domain 1 K04M3_05480 PF13089 Polyphosphate kinase N-terminal domain K04M3_05480 PF13090 Polyphosphate kinase C-terminal domain 2 K04M3_05480 PF02503 Polyphosphate kinase middle domain K04M3_05490 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_05500 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_05510 PF00005 ABC transporter K04M3_05520 PF01895 PhoU domain K04M3_05530 PF03976 Polyphosphate kinase 2 (PPK2) K04M3_05540 PF03932 CutC family K04M3_05550 PF10417 C-terminal domain of 1-Cys peroxiredoxin K04M3_05550 PF00578 AhpC/TSA family K04M3_05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_05560 PF03466 LysR substrate binding domain K04M3_05570 PF01274 Malate synthase K04M3_05580 PF00463 Isocitrate lyase family K04M3_05590 PF00571 CBS domain K04M3_05610 PF02547 Queuosine biosynthesis protein K04M3_05620 PF01702 Queuine tRNA-ribosyltransferase K04M3_05630 PF02699 Preprotein translocase subunit K04M3_05640 PF07549 SecD/SecF GG Motif K04M3_05640 PF13721 SecD export protein N-terminal TM region K04M3_05640 PF02355 Protein export membrane protein K04M3_05650 PF02355 Protein export membrane protein K04M3_05650 PF07549 SecD/SecF GG Motif K04M3_05680 PF00459 Inositol monophosphatase family K04M3_05690 PF00588 SpoU rRNA Methylase family K04M3_05700 PF02082 Transcriptional regulator K04M3_05710 PF00266 Aminotransferase class-V K04M3_05720 PF01592 NifU-like N terminal domain K04M3_05730 PF01521 Iron-sulphur cluster biosynthesis K04M3_05740 PF00226 DnaJ domain K04M3_05740 PF07743 HSCB C-terminal oligomerisation domain K04M3_05750 PF00012 Hsp70 protein K04M3_05760 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M3_05770 PF04384 Iron-sulphur cluster assembly K04M3_05780 PF12404 Peptidase K04M3_05780 PF00883 Cytosol aminopeptidase family, catalytic domain K04M3_05790 PF00334 Nucleoside diphosphate kinase K04M3_05800 PF04055 Radical SAM superfamily K04M3_05810 PF13464 Domain of unknown function (DUF4115) K04M3_05820 PF04551 GcpE protein K04M3_05830 PF03129 Anticodon binding domain K04M3_05830 PF13393 Histidyl-tRNA synthetase K04M3_05840 PF09976 Tetratricopeptide repeat-like domain K04M3_05850 PF13360 PQQ-like domain K04M3_05860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K04M3_05860 PF01926 50S ribosome-binding GTPase K04M3_05890 PF02601 Exonuclease VII, large subunit K04M3_05890 PF13742 OB-fold nucleic acid binding domain K04M3_05900 PF00478 IMP dehydrogenase / GMP reductase domain K04M3_05900 PF00571 CBS domain K04M3_05910 PF02540 NAD synthase K04M3_05910 PF00958 GMP synthase C terminal domain K04M3_05910 PF00117 Glutamine amidotransferase class-I K04M3_05920 PF13356 Arm DNA-binding domain K04M3_05920 PF00589 Phage integrase family K04M3_06060 PF03553 Na+/H+ antiporter family K04M3_06070 PF06483 Chitinase C K04M3_06070 PF00704 Glycosyl hydrolases family 18 K04M3_06080 PF01184 GPR1/FUN34/yaaH family K04M3_06090 PF01235 Sodium:alanine symporter family K04M3_06100 PF01266 FAD dependent oxidoreductase K04M3_06120 PF01053 Cys/Met metabolism PLP-dependent enzyme K04M3_06130 PF00202 Aminotransferase class-III K04M3_06170 PF00583 Acetyltransferase (GNAT) family K04M3_06170 PF00795 Carbon-nitrogen hydrolase K04M3_06180 PF03466 LysR substrate binding domain K04M3_06180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_06220 PF01668 SmpB protein K04M3_06230 PF03364 Polyketide cyclase / dehydrase and lipid transport K04M3_06240 PF03658 RnfH family Ubiquitin K04M3_06250 PF04355 SmpA / OmlA family K04M3_06270 PF02463 RecF/RecN/SMC N terminal domain K04M3_06290 PF01513 ATP-NAD kinase K04M3_06300 PF01025 GrpE K04M3_06320 PF00375 Sodium:dicarboxylate symporter family K04M3_06330 PF00012 Hsp70 protein K04M3_06340 PF00226 DnaJ domain K04M3_06340 PF01556 DnaJ C terminal domain K04M3_06340 PF00684 DnaJ central domain K04M3_06350 PF00114 Pilin (bacterial filament) K04M3_06350 PF07963 Prokaryotic N-terminal methylation motif K04M3_06400 PF03806 AbgT putative transporter family K04M3_06410 PF14437 MafB19-like deaminase K04M3_06420 PF01464 Transglycosylase SLT domain K04M3_06420 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_06430 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain K04M3_06430 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal K04M3_06430 PF02769 AIR synthase related protein, C-terminal domain K04M3_06460 PF00593 TonB dependent receptor K04M3_06460 PF07715 TonB-dependent Receptor Plug Domain K04M3_06490 PF07687 Peptidase dimerisation domain K04M3_06490 PF01546 Peptidase family M20/M25/M40 K04M3_06500 PF00860 Permease family K04M3_06510 PF00156 Phosphoribosyl transferase domain K04M3_06530 PF07417 Sigma factor-binding transcriptional regulator Crl K04M3_06540 PF00696 Amino acid kinase family K04M3_06540 PF01472 PUA domain K04M3_06550 PF00171 Aldehyde dehydrogenase family K04M3_06560 PF03477 ATP cone domain K04M3_06570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K04M3_06570 PF01872 RibD C-terminal domain K04M3_06580 PF00677 Lumazine binding domain K04M3_06590 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K04M3_06590 PF00925 GTP cyclohydrolase II K04M3_06600 PF00885 6,7-dimethyl-8-ribityllumazine synthase K04M3_06610 PF01029 NusB family K04M3_06620 PF00586 AIR synthase related protein, N-terminal domain K04M3_06620 PF02769 AIR synthase related protein, C-terminal domain K04M3_06630 PF04608 Phosphatidylglycerophosphatase A K04M3_06640 PF02779 Transketolase, pyrimidine binding domain K04M3_06640 PF02780 Transketolase, C-terminal domain K04M3_06640 PF13292 1-deoxy-D-xylulose-5-phosphate synthase K04M3_06650 PF00348 Polyprenyl synthetase K04M3_06660 PF02609 Exonuclease VII small subunit K04M3_06670 PF01618 MotA/TolQ/ExbB proton channel family K04M3_06680 PF00691 OmpA family K04M3_06680 PF13677 Membrane MotB of proton-channel complex MotA/MotB K04M3_06690 PF02926 THUMP domain K04M3_06690 PF02568 Thiamine biosynthesis protein (ThiI) K04M3_06700 PF03466 LysR substrate binding domain K04M3_06700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_06720 PF04241 Protein of unknown function (DUF423) K04M3_06730 PF01728 FtsJ-like methyltransferase K04M3_06730 PF18125 RlmM ferredoxin-like domain K04M3_06740 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K04M3_06740 PF01367 5'-3' exonuclease, C-terminal SAM fold K04M3_06750 PF03641 Possible lysine decarboxylase K04M3_06750 PF11892 Domain of unknown function (DUF3412) K04M3_06750 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases K04M3_06760 PF00072 Response regulator receiver domain K04M3_06760 PF00990 Diguanylate cyclase, GGDEF domain K04M3_06780 PF14489 QueF-like protein K04M3_06780 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term K04M3_06790 PF07348 Syd protein (SUKH-2) K04M3_06800 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) K04M3_06810 PF03180 NLPA lipoprotein K04M3_06820 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_06830 PF09383 NIL domain K04M3_06830 PF00005 ABC transporter K04M3_06850 PF00356 Bacterial regulatory proteins, lacI family K04M3_06860 PF02378 Phosphotransferase system, EIIC K04M3_06860 PF00367 phosphotransferase system, EIIB K04M3_06870 PF00128 Alpha amylase, catalytic domain K04M3_06870 PF16657 Maltogenic Amylase, C-terminal domain K04M3_06900 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) K04M3_06900 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 K04M3_06910 PF00464 Serine hydroxymethyltransferase K04M3_06920 PF04055 Radical SAM superfamily K04M3_06920 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family K04M3_06930 PF03099 Biotin/lipoate A/B protein ligase family K04M3_06940 PF04359 Protein of unknown function (DUF493) K04M3_06950 PF07943 Penicillin-binding protein 5, C-terminal domain K04M3_06950 PF00768 D-alanyl-D-alanine carboxypeptidase K04M3_06960 PF03330 Lytic transglycolase K04M3_06960 PF05036 Sporulation related domain K04M3_06970 PF01098 Cell cycle protein K04M3_06980 PF00905 Penicillin binding protein transpeptidase domain K04M3_06980 PF03717 Penicillin-binding Protein dimerisation domain K04M3_06990 PF02590 Predicted SPOUT methyltransferase K04M3_07010 PF06144 DNA polymerase III, delta subunit K04M3_07010 PF14840 Processivity clamp loader gamma complex DNA pol III C-term K04M3_07020 PF04390 Lipopolysaccharide-assembly K04M3_07030 PF08264 Anticodon-binding domain of tRNA K04M3_07030 PF00133 tRNA synthetases class I (I, L, M and V) K04M3_07030 PF13603 Leucyl-tRNA synthetase, Domain 2 K04M3_07040 PF07295 Zinc-ribbon containing domain K04M3_07050 PF00795 Carbon-nitrogen hydrolase K04M3_07060 PF00571 CBS domain K04M3_07060 PF03471 Transporter associated domain K04M3_07070 PF02130 Uncharacterized protein family UPF0054 K04M3_07080 PF02562 PhoH-like protein K04M3_07090 PF00919 Uncharacterized protein family UPF0004 K04M3_07090 PF01938 TRAM domain K04M3_07090 PF04055 Radical SAM superfamily K04M3_07100 PF01494 FAD binding domain K04M3_07310 PF01926 50S ribosome-binding GTPase K04M3_07310 PF06071 Protein of unknown function (DUF933) K04M3_07320 PF01195 Peptidyl-tRNA hydrolase K04M3_07330 PF14572 Phosphoribosyl synthetase-associated domain K04M3_07330 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase K04M3_07340 PF00288 GHMP kinases N terminal domain K04M3_07340 PF08544 GHMP kinases C terminal K04M3_07350 PF03550 Outer membrane lipoprotein LolB K04M3_07360 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain K04M3_07360 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain K04M3_07360 PF01488 Shikimate / quinate 5-dehydrogenase K04M3_07370 PF00472 RF-1 domain K04M3_07370 PF03462 PCRF domain K04M3_07380 PF17827 PrmC N-terminal domain K04M3_07380 PF13847 Methyltransferase domain K04M3_07390 PF04247 Invasion gene expression up-regulator, SirB K04M3_07400 PF13369 Transglutaminase-like superfamily K04M3_07410 PF00793 DAHP synthetase I family K04M3_07420 PF00149 Calcineurin-like phosphoesterase K04M3_07420 PF02872 5'-nucleotidase, C-terminal domain K04M3_07430 PF04073 Aminoacyl-tRNA editing domain K04M3_07440 PF00849 RNA pseudouridylate synthase K04M3_07440 PF01479 S4 domain K04M3_07450 PF01713 Smr domain K04M3_07500 PF00728 Glycosyl hydrolase family 20, catalytic domain K04M3_07500 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain K04M3_07500 PF03173 Putative carbohydrate binding domain K04M3_07500 PF02838 Glycosyl hydrolase family 20, domain 2 K04M3_07530 PF00403 Heavy-metal-associated domain K04M3_07540 PF13609 Gram-negative porin K04M3_07550 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K04M3_07560 PF00749 tRNA synthetases class I (E and Q), catalytic domain K04M3_07570 PF01389 OmpA-like transmembrane domain K04M3_07570 PF00691 OmpA family K04M3_07660 PF01584 CheW-like domain K04M3_07660 PF00072 Response regulator receiver domain K04M3_07670 PF01739 CheR methyltransferase, SAM binding domain K04M3_07670 PF03705 CheR methyltransferase, all-alpha domain K04M3_07680 PF00460 Flagella basal body rod protein K04M3_07690 PF00460 Flagella basal body rod protein K04M3_07690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_07700 PF03963 Flagellar hook capping protein - N-terminal region K04M3_07700 PF13860 FlgD Ig-like domain K04M3_07700 PF13861 FlgD Tudor-like domain K04M3_07710 PF00460 Flagella basal body rod protein K04M3_07710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_07710 PF07559 Flagellar basal body protein FlaE K04M3_07720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_07720 PF00460 Flagella basal body rod protein K04M3_07730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_07730 PF00460 Flagella basal body rod protein K04M3_07740 PF02107 Flagellar L-ring protein K04M3_07750 PF02119 Flagellar P-ring protein K04M3_07760 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K04M3_07760 PF10135 Rod binding protein K04M3_07770 PF07196 Flagellin hook IN motif K04M3_07770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_07780 PF00669 Bacterial flagellin N-terminal helical region K04M3_07790 PF00700 Bacterial flagellin C-terminal helical region K04M3_07790 PF07196 Flagellin hook IN motif K04M3_07790 PF00669 Bacterial flagellin N-terminal helical region K04M3_07800 PF00669 Bacterial flagellin N-terminal helical region K04M3_07800 PF07196 Flagellin hook IN motif K04M3_07800 PF00700 Bacterial flagellin C-terminal helical region K04M3_07810 PF00669 Bacterial flagellin N-terminal helical region K04M3_07810 PF07196 Flagellin hook IN motif K04M3_07810 PF00700 Bacterial flagellin C-terminal helical region K04M3_07820 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K04M3_07830 PF00391 PEP-utilising enzyme, mobile domain K04M3_07830 PF05524 PEP-utilising enzyme, N-terminal K04M3_07830 PF02896 PEP-utilising enzyme, TIM barrel domain K04M3_07850 PF00381 PTS HPr component phosphorylation site K04M3_07860 PF00291 Pyridoxal-phosphate dependent enzyme K04M3_07880 PF04354 ZipA, C-terminal FtsZ-binding domain K04M3_07890 PF03120 NAD-dependent DNA ligase OB-fold domain K04M3_07890 PF00533 BRCA1 C Terminus (BRCT) domain K04M3_07890 PF01653 NAD-dependent DNA ligase adenylation domain K04M3_07890 PF12826 Helix-hairpin-helix motif K04M3_07890 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K04M3_07900 PF03573 outer membrane porin, OprD family K04M3_07940 PF16200 C-terminal region of band_7 K04M3_07940 PF01145 SPFH domain / Band 7 family K04M3_07950 PF11658 Cellulose biosynthesis protein BcsG K04M3_07970 PF10995 Cellulose biosynthesis GIL K04M3_07990 PF06564 Cellulose biosynthesis protein BcsQ K04M3_08000 PF00535 Glycosyl transferase family 2 K04M3_08000 PF03552 Cellulose synthase K04M3_08000 PF07238 PilZ domain K04M3_08010 PF03170 Bacterial cellulose synthase subunit K04M3_08020 PF01270 Glycosyl hydrolases family 8 K04M3_08030 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) K04M3_08040 PF00085 Thioredoxin K04M3_08050 PF00106 short chain dehydrogenase K04M3_08060 PF01370 NAD dependent epimerase/dehydratase family K04M3_08060 PF08338 Domain of unknown function (DUF1731) K04M3_08070 PF07556 Protein of unknown function (DUF1538) K04M3_08080 PF07556 Protein of unknown function (DUF1538) K04M3_08120 PF12850 Calcineurin-like phosphoesterase superfamily domain K04M3_08150 PF17323 Trans-membrane regulatory protein ToxS K04M3_08160 PF00486 Transcriptional regulatory protein, C terminal K04M3_08170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_08170 PF00183 Hsp90 protein K04M3_08180 PF05191 Adenylate kinase, active site lid K04M3_08190 PF00762 Ferrochelatase K04M3_08200 PF00854 POT family K04M3_08210 PF02357 Transcription termination factor nusG K04M3_08220 PF00733 Asparagine synthase K04M3_08220 PF13537 Glutamine amidotransferase domain K04M3_08230 PF02254 TrkA-N domain K04M3_08230 PF00999 Sodium/hydrogen exchanger family K04M3_08240 PF01047 MarR family K04M3_08240 PF00480 ROK family K04M3_08250 PF01979 Amidohydrolase family K04M3_08260 PF00367 phosphotransferase system, EIIB K04M3_08260 PF02378 Phosphotransferase system, EIIC K04M3_08260 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K04M3_08270 PF00749 tRNA synthetases class I (E and Q), catalytic domain K04M3_08270 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain K04M3_08280 PF01475 Ferric uptake regulator family K04M3_08300 PF00258 Flavodoxin K04M3_08320 PF12697 Alpha/beta hydrolase family K04M3_08330 PF17206 SeqA protein N-terminal domain K04M3_08330 PF03925 SeqA protein C-terminal domain K04M3_08340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K04M3_08340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K04M3_08340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K04M3_08340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K04M3_08360 PF01784 NIF3 (NGG1p interacting factor 3) K04M3_08370 PF00285 Citrate synthase, C-terminal domain K04M3_08380 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K04M3_08390 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K04M3_08400 PF00890 FAD binding domain K04M3_08400 PF02910 Fumarate reductase flavoprotein C-term K04M3_08410 PF13085 2Fe-2S iron-sulfur cluster binding domain K04M3_08420 PF00676 Dehydrogenase E1 component K04M3_08420 PF16870 2-oxoglutarate dehydrogenase C-terminal K04M3_08420 PF02779 Transketolase, pyrimidine binding domain K04M3_08420 PF16078 2-oxoglutarate dehydrogenase N-terminus K04M3_08430 PF02817 e3 binding domain K04M3_08430 PF00364 Biotin-requiring enzyme K04M3_08430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K04M3_08440 PF00549 CoA-ligase K04M3_08440 PF08442 ATP-grasp domain K04M3_08450 PF02629 CoA binding domain K04M3_08450 PF00549 CoA-ligase K04M3_08460 PF00950 ABC 3 transport family K04M3_08470 PF00005 ABC transporter K04M3_08480 PF01297 Zinc-uptake complex component A periplasmic K04M3_08490 PF12833 Helix-turn-helix domain K04M3_08490 PF02311 AraC-like ligand binding domain K04M3_08500 PF04023 FeoA domain K04M3_08510 PF17910 FeoB cytosolic helical domain K04M3_08510 PF07664 Ferrous iron transport protein B C terminus K04M3_08510 PF07670 Nucleoside recognition K04M3_08510 PF02421 Ferrous iron transport protein B K04M3_08550 PF00750 tRNA synthetases class I (R) K04M3_08550 PF03485 Arginyl tRNA synthetase N terminal domain K04M3_08550 PF05746 DALR anticodon binding domain K04M3_08560 PF06185 YecM protein K04M3_08580 PF00089 Trypsin K04M3_08590 PF00551 Formyl transferase K04M3_08590 PF01842 ACT domain K04M3_08600 PF04851 Type III restriction enzyme, res subunit K04M3_08600 PF13307 Helicase C-terminal domain K04M3_08610 PF00814 Glycoprotease family K04M3_08630 PF03843 Outer membrane lipoprotein Slp family K04M3_08640 PF00561 alpha/beta hydrolase fold K04M3_08650 PF13193 AMP-binding enzyme C-terminal domain K04M3_08650 PF00501 AMP-binding enzyme K04M3_08660 PF00570 HRDC domain K04M3_08660 PF01612 3'-5' exonuclease K04M3_08670 PF03776 Septum formation topological specificity factor MinE K04M3_08680 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K04M3_08690 PF05209 Septum formation inhibitor MinC, N-terminal domain K04M3_08690 PF03775 Septum formation inhibitor MinC, C-terminal domain K04M3_08700 PF05166 YcgL domain K04M3_08710 PF13406 Transglycosylase SLT domain K04M3_08720 PF03466 LysR substrate binding domain K04M3_08720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_08730 PF01773 Na+ dependent nucleoside transporter N-terminus K04M3_08730 PF07662 Na+ dependent nucleoside transporter C-terminus K04M3_08730 PF07670 Nucleoside recognition K04M3_08740 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain K04M3_08740 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain K04M3_08760 PF01209 ubiE/COQ5 methyltransferase family K04M3_08770 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M3_08770 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M3_08790 PF07977 FabA-like domain K04M3_08800 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M3_08800 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M3_08850 PF00221 Aromatic amino acid lyase K04M3_08860 PF00535 Glycosyl transferase family 2 K04M3_08870 PF07977 FabA-like domain K04M3_08900 PF00550 Phosphopantetheine attachment site K04M3_08910 PF00550 Phosphopantetheine attachment site K04M3_08960 PF04820 Tryptophan halogenase K04M3_08980 PF00270 DEAD/DEAH box helicase K04M3_08980 PF00271 Helicase conserved C-terminal domain K04M3_08990 PF02080 TrkA-C domain K04M3_08990 PF02254 TrkA-N domain K04M3_09000 PF02386 Cation transport protein K04M3_09040 PF02696 Uncharacterized ACR, YdiU/UPF0061 family K04M3_09050 PF03480 Bacterial extracellular solute-binding protein, family 7 K04M3_09060 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K04M3_09070 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K04M3_09090 PF02954 Bacterial regulatory protein, Fis family K04M3_09090 PF00158 Sigma-54 interaction domain K04M3_09090 PF00072 Response regulator receiver domain K04M3_09100 PF00512 His Kinase A (phospho-acceptor) domain K04M3_09100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_09100 PF02743 Cache domain K04M3_09110 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M3_09110 PF05697 Bacterial trigger factor protein (TF) K04M3_09110 PF05698 Bacterial trigger factor protein (TF) C-terminus K04M3_09120 PF00574 Clp protease K04M3_09130 PF06689 ClpX C4-type zinc finger K04M3_09130 PF10431 C-terminal, D2-small domain, of ClpB protein K04M3_09130 PF07724 AAA domain (Cdc48 subfamily) K04M3_09140 PF00004 ATPase family associated with various cellular activities (AAA) K04M3_09140 PF05362 Lon protease (S16) C-terminal proteolytic domain K04M3_09140 PF02190 ATP-dependent protease La (LON) substrate-binding domain K04M3_09150 PF00216 Bacterial DNA-binding protein K04M3_09160 PF13145 PPIC-type PPIASE domain K04M3_09200 PF01966 HD domain K04M3_09200 PF13286 Phosphohydrolase-associated domain K04M3_09220 PF00155 Aminotransferase class I and II K04M3_09230 PF00425 chorismate binding enzyme K04M3_09240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K04M3_09240 PF16582 Middle domain of thiamine pyrophosphate K04M3_09240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K04M3_09250 PF12697 Alpha/beta hydrolase family K04M3_09260 PF00378 Enoyl-CoA hydratase/isomerase K04M3_09270 PF13378 Enolase C-terminal domain-like K04M3_09280 PF00501 AMP-binding enzyme K04M3_09280 PF13193 AMP-binding enzyme C-terminal domain K04M3_09300 PF03601 Conserved hypothetical protein 698 K04M3_09310 PF07690 Major Facilitator Superfamily K04M3_09400 PF00529 HlyD membrane-fusion protein of T1SS K04M3_09400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_09410 PF00873 AcrB/AcrD/AcrF family K04M3_09440 PF00291 Pyridoxal-phosphate dependent enzyme K04M3_09450 PF13404 AsnC-type helix-turn-helix domain K04M3_09450 PF01037 Lrp/AsnC ligand binding domain K04M3_09480 PF09619 Type III secretion system lipoprotein chaperone (YscW) K04M3_09490 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K04M3_09510 PF08448 PAS fold K04M3_09510 PF00990 Diguanylate cyclase, GGDEF domain K04M3_09520 PF08032 RNA 2'-O ribose methyltransferase substrate binding K04M3_09520 PF00588 SpoU rRNA Methylase family K04M3_09530 PF00478 IMP dehydrogenase / GMP reductase domain K04M3_09530 PF00571 CBS domain K04M3_09540 PF00403 Heavy-metal-associated domain K04M3_09550 PF01048 Phosphorylase superfamily K04M3_09570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_09570 PF00672 HAMP domain K04M3_09580 PF01230 HIT domain K04M3_09610 PF13036 Peptidoglycan-synthase activator LpoB K04M3_09610 PF08139 Prokaryotic membrane lipoprotein lipid attachment site K04M3_09630 PF05728 Uncharacterised protein family (UPF0227) K04M3_09640 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_09670 PF17757 UvrB interaction domain K04M3_09670 PF03461 TRCF domain K04M3_09670 PF00271 Helicase conserved C-terminal domain K04M3_09670 PF00270 DEAD/DEAH box helicase K04M3_09670 PF02559 CarD-like/TRCF domain K04M3_09690 PF02687 FtsX-like permease family K04M3_09690 PF12704 MacB-like periplasmic core domain K04M3_09700 PF00005 ABC transporter K04M3_09710 PF02687 FtsX-like permease family K04M3_09710 PF12704 MacB-like periplasmic core domain K04M3_09730 PF13567 Domain of unknown function (DUF4131) K04M3_09730 PF03772 Competence protein K04M3_09730 PF00753 Metallo-beta-lactamase superfamily K04M3_09740 PF00664 ABC transporter transmembrane region K04M3_09740 PF00005 ABC transporter K04M3_09750 PF02606 Tetraacyldisaccharide-1-P 4'-kinase K04M3_09760 PF03966 Trm112p-like protein K04M3_09770 PF02348 Cytidylyltransferase K04M3_09780 PF04293 SpoVR like protein K04M3_09790 PF04285 Protein of unknown function (DUF444) K04M3_09800 PF06798 PrkA serine protein kinase C-terminal domain K04M3_09800 PF08298 PrkA AAA domain K04M3_09810 PF03887 YfbU domain K04M3_09830 PF04055 Radical SAM superfamily K04M3_09850 PF02901 Pyruvate formate lyase-like K04M3_09850 PF01228 Glycine radical K04M3_09880 PF00005 ABC transporter K04M3_09890 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_09900 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_09910 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_09930 PF03372 Endonuclease/Exonuclease/phosphatase family K04M3_09940 PF10689 Protein of unknown function (DUF2496) K04M3_09950 PF07445 Primosomal replication protein priC K04M3_09960 PF01925 Sulfite exporter TauE/SafE K04M3_09970 PF06733 DEAD_2 K04M3_09970 PF13307 Helicase C-terminal domain K04M3_10000 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K04M3_10010 PF00849 RNA pseudouridylate synthase K04M3_10020 PF03971 Monomeric isocitrate dehydrogenase K04M3_10030 PF00313 'Cold-shock' DNA-binding domain K04M3_10040 PF02617 ATP-dependent Clp protease adaptor protein ClpS K04M3_10050 PF07724 AAA domain (Cdc48 subfamily) K04M3_10050 PF00004 ATPase family associated with various cellular activities (AAA) K04M3_10050 PF02861 Clp amino terminal domain, pathogenicity island component K04M3_10050 PF10431 C-terminal, D2-small domain, of ClpB protein K04M3_10050 PF17871 AAA lid domain K04M3_10060 PF01176 Translation initiation factor 1A / IF-1 K04M3_10070 PF04376 Arginine-tRNA-protein transferase, N terminus K04M3_10070 PF04377 Arginine-tRNA-protein transferase, C terminus K04M3_10080 PF03588 Leucyl/phenylalanyl-tRNA protein transferase K04M3_10100 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K04M3_10110 PF10692 Protein of unknown function (DUF2498) K04M3_10120 PF01131 DNA topoisomerase K04M3_10120 PF01751 Toprim domain K04M3_10120 PF01396 Topoisomerase DNA binding C4 zinc finger K04M3_10120 PF08272 Topoisomerase I zinc-ribbon-like K04M3_10130 PF00483 Nucleotidyl transferase K04M3_10140 PF00534 Glycosyl transferases group 1 K04M3_10140 PF08323 Starch synthase catalytic domain K04M3_10180 PF04994 TfoX C-terminal domain K04M3_10180 PF04993 TfoX N-terminal domain K04M3_10190 PF00356 Bacterial regulatory proteins, lacI family K04M3_10200 PF02613 Nitrate reductase delta subunit K04M3_10210 PF00486 Transcriptional regulatory protein, C terminal K04M3_10210 PF00072 Response regulator receiver domain K04M3_10220 PF02698 DUF218 domain K04M3_10240 PF17192 MukF middle domain K04M3_10240 PF17193 MukF C-terminal domain K04M3_10240 PF03882 MukF winged-helix domain K04M3_10250 PF04288 MukE-like family K04M3_10260 PF16330 MukB hinge domain K04M3_10260 PF04310 MukB N-terminal K04M3_10300 PF18030 RimK PreATP-grasp domain K04M3_10300 PF08443 RimK-like ATP-grasp domain K04M3_10310 PF08003 Protein of unknown function (DUF1698) K04M3_10320 PF13649 Methyltransferase domain K04M3_10330 PF01904 Protein of unknown function DUF72 K04M3_10340 PF00152 tRNA synthetases class II (D, K and N) K04M3_10340 PF01336 OB-fold nucleic acid binding domain K04M3_10340 PF02938 GAD domain K04M3_10350 PF01709 Transcriptional regulator K04M3_10360 PF02075 Crossover junction endodeoxyribonuclease RuvC K04M3_10370 PF07499 RuvA, C-terminal domain K04M3_10370 PF01330 RuvA N terminal domain K04M3_10380 PF17864 RuvB AAA lid domain K04M3_10380 PF05496 Holliday junction DNA helicase RuvB P-loop domain K04M3_10380 PF05491 RuvB C-terminal winged helix domain K04M3_10390 PF01654 Cytochrome bd terminal oxidase subunit I K04M3_10400 PF02322 Cytochrome bd terminal oxidase subunit II K04M3_10410 PF08173 Membrane bound YbgT-like protein K04M3_10430 PF03061 Thioesterase superfamily K04M3_10440 PF01618 MotA/TolQ/ExbB proton channel family K04M3_10450 PF02472 Biopolymer transport protein ExbD/TolR K04M3_10470 PF04052 TolB amino-terminal domain K04M3_10470 PF07676 WD40-like Beta Propeller Repeat K04M3_10480 PF00691 OmpA family K04M3_10490 PF16331 TolA binding protein trimerisation K04M3_10490 PF13174 Tetratricopeptide repeat K04M3_10500 PF02445 Quinolinate synthetase A protein K04M3_10520 PF03994 Domain of Unknown Function (DUF350) K04M3_10540 PF03738 Glutathionylspermidine synthase preATP-grasp K04M3_10560 PF09308 LuxQ, periplasmic K04M3_10560 PF00072 Response regulator receiver domain K04M3_10560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_10560 PF00512 His Kinase A (phospho-acceptor) domain K04M3_10570 PF06610 L-alanine exporter K04M3_10600 PF02322 Cytochrome bd terminal oxidase subunit II K04M3_10610 PF01654 Cytochrome bd terminal oxidase subunit I K04M3_10660 PF00529 HlyD membrane-fusion protein of T1SS K04M3_10660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_10670 PF00873 AcrB/AcrD/AcrF family K04M3_10700 PF00579 tRNA synthetases class I (W and Y) K04M3_10720 PF03372 Endonuclease/Exonuclease/phosphatase family K04M3_10740 PF00672 HAMP domain K04M3_10740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_10750 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) K04M3_10770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_10770 PF03466 LysR substrate binding domain K04M3_10790 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K04M3_10790 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K04M3_10800 PF01037 Lrp/AsnC ligand binding domain K04M3_10810 PF01580 FtsK/SpoIIIE family K04M3_10810 PF09397 Ftsk gamma domain K04M3_10810 PF13491 4TM region of DNA translocase FtsK/SpoIIIE K04M3_10810 PF17854 FtsK alpha domain K04M3_10820 PF03548 Outer membrane lipoprotein carrier protein LolA K04M3_10830 PF16193 AAA C-terminal domain K04M3_10830 PF12002 MgsA AAA+ ATPase C terminal K04M3_10830 PF00004 ATPase family associated with various cellular activities (AAA) K04M3_10840 PF02403 Seryl-tRNA synthetase N-terminal domain K04M3_10840 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K04M3_10870 PF01258 Prokaryotic dksA/traR C4-type zinc finger K04M3_10880 PF00202 Aminotransferase class-III K04M3_10890 PF04055 Radical SAM superfamily K04M3_10890 PF06968 Biotin and Thiamin Synthesis associated domain K04M3_10900 PF00155 Aminotransferase class I and II K04M3_10910 PF08241 Methyltransferase domain K04M3_10940 PF01435 Peptidase family M48 K04M3_10960 PF00106 short chain dehydrogenase K04M3_11010 PF16036 Chalcone isomerase-like K04M3_11030 PF00206 Lyase K04M3_11030 PF08328 Adenylosuccinate lyase C-terminal K04M3_11040 PF04356 Protein of unknown function (DUF489) K04M3_11070 PF00294 pfkB family carbohydrate kinase K04M3_11080 PF00816 H-NS histone family K04M3_11090 PF03553 Na+/H+ antiporter family K04M3_11100 PF08029 HisG, C-terminal domain K04M3_11100 PF01634 ATP phosphoribosyltransferase K04M3_11110 PF00815 Histidinol dehydrogenase K04M3_11120 PF00155 Aminotransferase class I and II K04M3_11130 PF00475 Imidazoleglycerol-phosphate dehydratase K04M3_11130 PF08645 Polynucleotide kinase 3 phosphatase K04M3_11140 PF00117 Glutamine amidotransferase class-I K04M3_11150 PF00977 Histidine biosynthesis protein K04M3_11160 PF00977 Histidine biosynthesis protein K04M3_11170 PF01502 Phosphoribosyl-AMP cyclohydrolase K04M3_11170 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase K04M3_11180 PF02810 SEC-C motif K04M3_11190 PF00563 EAL domain K04M3_11190 PF08668 HDOD domain K04M3_11200 PF00149 Calcineurin-like phosphoesterase K04M3_11210 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K04M3_11220 PF09190 DALR domain K04M3_11220 PF01406 tRNA synthetases class I (C) catalytic domain K04M3_11230 PF00265 Thymidine kinase K04M3_11290 PF01226 Formate/nitrite transporter K04M3_11310 PF03649 Uncharacterised protein family (UPF0014) K04M3_11320 PF06796 Periplasmic nitrate reductase protein NapE K04M3_11330 PF03264 NapC/NirT cytochrome c family, N-terminal region K04M3_11340 PF01568 Molydopterin dinucleotide binding domain K04M3_11340 PF18364 Molybdopterin oxidoreductase N-terminal domain K04M3_11340 PF00384 Molybdopterin oxidoreductase K04M3_11350 PF16875 Glycosyl hydrolase family 36 N-terminal domain K04M3_11350 PF16874 Glycosyl hydrolase family 36 C-terminal domain K04M3_11370 PF01368 DHH family K04M3_11370 PF02833 DHHA2 domain K04M3_11390 PF00005 ABC transporter K04M3_11400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_11400 PF00005 ABC transporter K04M3_11410 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_11410 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M3_11420 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_11430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_11440 PF00158 Sigma-54 interaction domain K04M3_11440 PF02954 Bacterial regulatory protein, Fis family K04M3_11450 PF04012 PspA/IM30 family K04M3_11460 PF06667 Phage shock protein B K04M3_11470 PF04024 PspC domain K04M3_11490 PF13533 Biotin-lipoyl like K04M3_11500 PF00873 AcrB/AcrD/AcrF family K04M3_11510 PF03352 Methyladenine glycosylase K04M3_11520 PF03280 Proteobacterial lipase chaperone protein K04M3_11530 PF00561 alpha/beta hydrolase fold K04M3_11540 PF01053 Cys/Met metabolism PLP-dependent enzyme K04M3_11550 PF13091 PLD-like domain K04M3_11550 PF13396 Phospholipase_D-nuclease N-terminal K04M3_11560 PF00209 Sodium:neurotransmitter symporter family K04M3_11570 PF00849 RNA pseudouridylate synthase K04M3_11590 PF00970 Oxidoreductase FAD-binding domain K04M3_11590 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M3_11590 PF00175 Oxidoreductase NAD-binding domain K04M3_11600 PF03063 Prismane/CO dehydrogenase family K04M3_11610 PF01590 GAF domain K04M3_11610 PF00158 Sigma-54 interaction domain K04M3_11630 PF01066 CDP-alcohol phosphatidyltransferase K04M3_11640 PF00005 ABC transporter K04M3_11650 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_11660 PF13416 Bacterial extracellular solute-binding protein K04M3_11680 PF06945 Protein of unknown function (DUF1289) K04M3_11700 PF00149 Calcineurin-like phosphoesterase K04M3_11700 PF02872 5'-nucleotidase, C-terminal domain K04M3_11720 PF01386 Ribosomal L25p family K04M3_11730 PF00512 His Kinase A (phospho-acceptor) domain K04M3_11730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_11730 PF00672 HAMP domain K04M3_11740 PF00072 Response regulator receiver domain K04M3_11740 PF00486 Transcriptional regulatory protein, C terminal K04M3_11760 PF04851 Type III restriction enzyme, res subunit K04M3_11760 PF00271 Helicase conserved C-terminal domain K04M3_11770 PF01479 S4 domain K04M3_11770 PF00849 RNA pseudouridylate synthase K04M3_11780 PF07690 Major Facilitator Superfamily K04M3_11800 PF11066 Protein of unknown function (DUF2867) K04M3_11800 PF13460 NAD(P)H-binding K04M3_11810 PF01554 MatE K04M3_11820 PF00005 ABC transporter K04M3_11850 PF06965 Na+/H+ antiporter 1 K04M3_11860 PF00440 Bacterial regulatory proteins, tetR family K04M3_11860 PF16295 Tetracyclin repressor-like, C-terminal domain K04M3_11870 PF09317 Domain of unknown function (DUF1974) K04M3_11870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M3_11870 PF02770 Acyl-CoA dehydrogenase, middle domain K04M3_11870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M3_11880 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase K04M3_11880 PF07055 Enoyl reductase FAD binding domain K04M3_11880 PF12241 Trans-2-enoyl-CoA reductase catalytic region K04M3_11890 PF06826 Predicted Permease Membrane Region K04M3_11890 PF02080 TrkA-C domain K04M3_11900 PF00462 Glutaredoxin K04M3_11920 PF00465 Iron-containing alcohol dehydrogenase K04M3_11930 PF01418 Helix-turn-helix domain, rpiR family K04M3_11930 PF01380 SIS domain K04M3_11940 PF00282 Pyridoxal-dependent decarboxylase conserved domain K04M3_11960 PF03956 Lysine exporter LysO K04M3_11980 PF04994 TfoX C-terminal domain K04M3_11980 PF04993 TfoX N-terminal domain K04M3_12020 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_12020 PF00512 His Kinase A (phospho-acceptor) domain K04M3_12020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_12040 PF00266 Aminotransferase class-V K04M3_12050 PF00291 Pyridoxal-phosphate dependent enzyme K04M3_12060 PF00664 ABC transporter transmembrane region K04M3_12060 PF00005 ABC transporter K04M3_12070 PF00664 ABC transporter transmembrane region K04M3_12070 PF00005 ABC transporter K04M3_12080 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_12100 PF00266 Aminotransferase class-V K04M3_12120 PF00990 Diguanylate cyclase, GGDEF domain K04M3_12120 PF00072 Response regulator receiver domain K04M3_12130 PF00939 Sodium:sulfate symporter transmembrane region K04M3_12140 PF02698 DUF218 domain K04M3_12150 PF03949 Malic enzyme, NAD binding domain K04M3_12150 PF00390 Malic enzyme, N-terminal domain K04M3_12160 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold K04M3_12160 PF00270 DEAD/DEAH box helicase K04M3_12160 PF11898 Domain of unknown function (DUF3418) K04M3_12160 PF00271 Helicase conserved C-terminal domain K04M3_12160 PF04408 Helicase associated domain (HA2) K04M3_12180 PF09423 PhoD-like phosphatase K04M3_12180 PF16655 PhoD-like phosphatase, N-terminal domain K04M3_12190 PF01259 SAICAR synthetase K04M3_12230 PF00691 OmpA family K04M3_12230 PF05736 OprF membrane domain K04M3_12260 PF02913 FAD linked oxidases, C-terminal domain K04M3_12260 PF01565 FAD binding domain K04M3_12260 PF13183 4Fe-4S dicluster domain K04M3_12270 PF04191 Phospholipid methyltransferase K04M3_12290 PF00221 Aromatic amino acid lyase K04M3_12300 PF17392 Urocanase C-terminal domain K04M3_12300 PF17391 Urocanase N-terminal domain K04M3_12300 PF01175 Urocanase Rossmann-like domain K04M3_12310 PF00491 Arginase family K04M3_12320 PF01979 Amidohydrolase family K04M3_12330 PF00392 Bacterial regulatory proteins, gntR family K04M3_12330 PF07702 UTRA domain K04M3_12360 PF03129 Anticodon binding domain K04M3_12360 PF02824 TGS domain K04M3_12360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K04M3_12360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K04M3_12370 PF05198 Translation initiation factor IF-3, N-terminal domain K04M3_12370 PF00707 Translation initiation factor IF-3, C-terminal domain K04M3_12380 PF01632 Ribosomal protein L35 K04M3_12390 PF00453 Ribosomal protein L20 K04M3_12400 PF01906 Putative heavy-metal-binding K04M3_12470 PF01409 tRNA synthetases class II core domain (F) K04M3_12470 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain K04M3_12480 PF03483 B3/4 domain K04M3_12480 PF03484 tRNA synthetase B5 domain K04M3_12480 PF03147 Ferredoxin-fold anticodon binding domain K04M3_12480 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain K04M3_12480 PF01588 Putative tRNA binding domain K04M3_12500 PF00216 Bacterial DNA-binding protein K04M3_12520 PF05724 Thiopurine S-methyltransferase (TPMT) K04M3_12530 PF02222 ATP-grasp domain K04M3_12540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K04M3_12540 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region K04M3_12550 PF04172 LrgB-like family K04M3_12560 PF03788 LrgA family K04M3_12570 PF08411 Exonuclease C-terminal K04M3_12570 PF00929 Exonuclease K04M3_12690 PF00533 BRCA1 C Terminus (BRCT) domain K04M3_12690 PF03120 NAD-dependent DNA ligase OB-fold domain K04M3_12690 PF01653 NAD-dependent DNA ligase adenylation domain K04M3_12690 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K04M3_12690 PF12826 Helix-hairpin-helix motif K04M3_12750 PF01695 IstB-like ATP binding protein K04M3_13050 PF13460 NAD(P)H-binding K04M3_13060 PF02277 Phosphoribosyltransferase K04M3_13070 PF02654 Cobalamin-5-phosphate synthase K04M3_13080 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase K04M3_13110 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K04M3_13120 PF01032 FecCD transport family K04M3_13130 PF00005 ABC transporter K04M3_13170 PF03466 LysR substrate binding domain K04M3_13170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_13190 PF01863 Protein of unknown function DUF45 K04M3_13200 PF05971 RNA methyltransferase K04M3_13240 PF00392 Bacterial regulatory proteins, gntR family K04M3_13250 PF00171 Aldehyde dehydrogenase family K04M3_13260 PF05544 Proline racemase K04M3_13270 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K04M3_13270 PF01266 FAD dependent oxidoreductase K04M3_13290 PF02423 Ornithine cyclodeaminase/mu-crystallin family K04M3_13300 PF00701 Dihydrodipicolinate synthetase family K04M3_13310 PF00005 ABC transporter K04M3_13310 PF08402 TOBE domain K04M3_13320 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_13330 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_13350 PF08453 Peptidase family M9 N-terminal K04M3_13350 PF01752 Collagenase K04M3_13370 PF00005 ABC transporter K04M3_13370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_13380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_13380 PF00005 ABC transporter K04M3_13390 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_13390 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M3_13400 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_13410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_13420 PF01546 Peptidase family M20/M25/M40 K04M3_13420 PF07687 Peptidase dimerisation domain K04M3_13430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M3_13440 PF04209 homogentisate 1,2-dioxygenase K04M3_13460 PF02798 Glutathione S-transferase, N-terminal domain K04M3_13460 PF14497 Glutathione S-transferase, C-terminal domain K04M3_13560 PF07007 Lysozyme inhibitor LprI K04M3_13610 PF02694 Uncharacterised BCR, YnfA/UPF0060 family K04M3_13640 PF03553 Na+/H+ antiporter family K04M3_13650 PF00120 Glutamine synthetase, catalytic domain K04M3_13660 PF07722 Peptidase C26 K04M3_13670 PF01381 Helix-turn-helix K04M3_13670 PF07883 Cupin domain K04M3_13680 PF00171 Aldehyde dehydrogenase family K04M3_13690 PF01266 FAD dependent oxidoreductase K04M3_13700 PF00795 Carbon-nitrogen hydrolase K04M3_13710 PF04371 Porphyromonas-type peptidyl-arginine deiminase K04M3_13720 PF00171 Aldehyde dehydrogenase family K04M3_13730 PF00202 Aminotransferase class-III K04M3_13810 PF04237 YjbR K04M3_13870 PF01627 Hpt domain K04M3_13870 PF00512 His Kinase A (phospho-acceptor) domain K04M3_13870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_13870 PF00989 PAS fold K04M3_13870 PF00072 Response regulator receiver domain K04M3_13870 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_13900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K04M3_13900 PF00512 His Kinase A (phospho-acceptor) domain K04M3_13900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_13900 PF00072 Response regulator receiver domain K04M3_13900 PF01627 Hpt domain K04M3_13900 PF00672 HAMP domain K04M3_13930 PF07007 Lysozyme inhibitor LprI K04M3_14000 PF03553 Na+/H+ antiporter family K04M3_14010 PF00120 Glutamine synthetase, catalytic domain K04M3_14020 PF07722 Peptidase C26 K04M3_14030 PF07883 Cupin domain K04M3_14030 PF01381 Helix-turn-helix K04M3_14040 PF00171 Aldehyde dehydrogenase family K04M3_14050 PF01266 FAD dependent oxidoreductase K04M3_14060 PF00795 Carbon-nitrogen hydrolase K04M3_14070 PF04371 Porphyromonas-type peptidyl-arginine deiminase K04M3_14080 PF00171 Aldehyde dehydrogenase family K04M3_14090 PF00202 Aminotransferase class-III K04M3_14100 PF12792 CSS motif domain associated with EAL K04M3_14100 PF00563 EAL domain K04M3_14120 PF01047 MarR family K04M3_14130 PF04237 YjbR K04M3_14180 PF00672 HAMP domain K04M3_14180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K04M3_14180 PF01627 Hpt domain K04M3_14180 PF00512 His Kinase A (phospho-acceptor) domain K04M3_14180 PF00072 Response regulator receiver domain K04M3_14180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_14190 PF03707 Bacterial signalling protein N terminal repeat K04M3_14190 PF00990 Diguanylate cyclase, GGDEF domain K04M3_14190 PF00563 EAL domain K04M3_14220 PF04204 Homoserine O-succinyltransferase K04M3_14240 PF00893 Small Multidrug Resistance protein K04M3_14250 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M3_14270 PF07508 Recombinase K04M3_14270 PF00239 Resolvase, N terminal domain K04M3_14270 PF13408 Recombinase zinc beta ribbon domain K04M3_14340 PF02796 Helix-turn-helix domain of resolvase K04M3_14340 PF00239 Resolvase, N terminal domain K04M3_14520 PF02074 Carboxypeptidase Taq (M32) metallopeptidase K04M3_14530 PF01810 LysE type translocator K04M3_14550 PF01235 Sodium:alanine symporter family K04M3_14600 PF00884 Sulfatase K04M3_14610 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K04M3_14620 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_14630 PF00571 CBS domain K04M3_14630 PF00005 ABC transporter K04M3_14660 PF02028 BCCT, betaine/carnitine/choline family transporter K04M3_14670 PF00583 Acetyltransferase (GNAT) family K04M3_14680 PF00202 Aminotransferase class-III K04M3_14690 PF06339 Ectoine synthase K04M3_14700 PF00696 Amino acid kinase family K04M3_14700 PF13840 ACT domain K04M3_14710 PF00884 Sulfatase K04M3_14730 PF03781 Sulfatase-modifying factor enzyme 1 K04M3_14740 PF13186 Iron-sulfur cluster-binding domain K04M3_14740 PF04055 Radical SAM superfamily K04M3_14770 PF00884 Sulfatase K04M3_14780 PF00884 Sulfatase K04M3_14800 PF03412 Peptidase C39 family K04M3_14800 PF00005 ABC transporter K04M3_14800 PF00664 ABC transporter transmembrane region K04M3_14820 PF02321 Outer membrane efflux protein K04M3_14850 PF00455 DeoR C terminal sensor domain K04M3_14850 PF08220 DeoR-like helix-turn-helix domain K04M3_14860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K04M3_14860 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K04M3_14870 PF03928 Haem-degrading K04M3_14880 PF00990 Diguanylate cyclase, GGDEF domain K04M3_14880 PF00072 Response regulator receiver domain K04M3_14920 PF00939 Sodium:sulfate symporter transmembrane region K04M3_14930 PF00512 His Kinase A (phospho-acceptor) domain K04M3_14930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_14940 PF02954 Bacterial regulatory protein, Fis family K04M3_14940 PF00072 Response regulator receiver domain K04M3_14940 PF00158 Sigma-54 interaction domain K04M3_14950 PF03707 Bacterial signalling protein N terminal repeat K04M3_14950 PF00563 EAL domain K04M3_14950 PF00990 Diguanylate cyclase, GGDEF domain K04M3_14960 PF01966 HD domain K04M3_14960 PF11871 Domain of unknown function (DUF3391) K04M3_14970 PF01810 LysE type translocator K04M3_14980 PF11230 Protein of unknown function (DUF3029) K04M3_14990 PF04055 Radical SAM superfamily K04M3_15010 PF03741 Integral membrane protein TerC family K04M3_15030 PF01966 HD domain K04M3_15040 PF00465 Iron-containing alcohol dehydrogenase K04M3_15050 PF03222 Tryptophan/tyrosine permease family K04M3_15060 PF11871 Domain of unknown function (DUF3391) K04M3_15060 PF01966 HD domain K04M3_15080 PF00005 ABC transporter K04M3_15090 PF01497 Periplasmic binding protein K04M3_15100 PF01032 FecCD transport family K04M3_15110 PF00593 TonB dependent receptor K04M3_15110 PF07715 TonB-dependent Receptor Plug Domain K04M3_15130 PF00005 ABC transporter K04M3_15130 PF00664 ABC transporter transmembrane region K04M3_15140 PF00664 ABC transporter transmembrane region K04M3_15140 PF00005 ABC transporter K04M3_15150 PF08334 Type II secretion system (T2SS), protein G K04M3_15150 PF07963 Prokaryotic N-terminal methylation motif K04M3_15170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_15170 PF03466 LysR substrate binding domain K04M3_15190 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K04M3_15190 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K04M3_15220 PF00012 Hsp70 protein K04M3_15230 PF00012 Hsp70 protein K04M3_15250 PF00990 Diguanylate cyclase, GGDEF domain K04M3_15330 PF02525 Flavodoxin-like fold K04M3_15340 PF04408 Helicase associated domain (HA2) K04M3_15340 PF00271 Helicase conserved C-terminal domain K04M3_15340 PF00270 DEAD/DEAH box helicase K04M3_15340 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold K04M3_15340 PF11898 Domain of unknown function (DUF3418) K04M3_15370 PF02028 BCCT, betaine/carnitine/choline family transporter K04M3_15390 PF02397 Bacterial sugar transferase K04M3_15410 PF13439 Glycosyltransferase Family 4 K04M3_15410 PF00534 Glycosyl transferases group 1 K04M3_15470 PF13439 Glycosyltransferase Family 4 K04M3_15470 PF00534 Glycosyl transferases group 1 K04M3_15480 PF00534 Glycosyl transferases group 1 K04M3_15480 PF13439 Glycosyltransferase Family 4 K04M3_15490 PF00158 Sigma-54 interaction domain K04M3_15490 PF00072 Response regulator receiver domain K04M3_15490 PF02954 Bacterial regulatory protein, Fis family K04M3_15520 PF10531 SLBB domain K04M3_15520 PF02563 Polysaccharide biosynthesis/export protein K04M3_15540 PF01740 STAS domain K04M3_15560 PF14743 DNA ligase OB-like domain K04M3_15560 PF01068 ATP dependent DNA ligase domain K04M3_15580 PF01554 MatE K04M3_15590 PF00677 Lumazine binding domain K04M3_15620 PF01339 CheB methylesterase K04M3_15620 PF00072 Response regulator receiver domain K04M3_15630 PF05230 MASE2 domain K04M3_15630 PF00990 Diguanylate cyclase, GGDEF domain K04M3_15650 PF00877 NlpC/P60 family K04M3_15730 PF00480 ROK family K04M3_15750 PF03454 MoeA C-terminal region (domain IV) K04M3_15750 PF03453 MoeA N-terminal region (domain I and II) K04M3_15750 PF00994 Probable molybdopterin binding domain K04M3_15760 PF12804 MobA-like NTP transferase domain K04M3_15770 PF08402 TOBE domain K04M3_15770 PF00005 ABC transporter K04M3_15780 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_15790 PF12849 PBP superfamily domain K04M3_15800 PF00158 Sigma-54 interaction domain K04M3_15800 PF02954 Bacterial regulatory protein, Fis family K04M3_15800 PF00072 Response regulator receiver domain K04M3_15810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_15810 PF00512 His Kinase A (phospho-acceptor) domain K04M3_15820 PF12848 ABC transporter K04M3_15820 PF00005 ABC transporter K04M3_15840 PF02634 FdhD/NarQ family K04M3_15880 PF02613 Nitrate reductase delta subunit K04M3_15900 PF01568 Molydopterin dinucleotide binding domain K04M3_15900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M3_15900 PF00384 Molybdopterin oxidoreductase K04M3_15910 PF13247 4Fe-4S dicluster domain K04M3_15960 PF00909 Ammonium Transporter Family K04M3_15980 PF02146 Sir2 family K04M3_15990 PF13416 Bacterial extracellular solute-binding protein K04M3_16000 PF13416 Bacterial extracellular solute-binding protein K04M3_16010 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_16020 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_16030 PF08402 TOBE domain K04M3_16030 PF00005 ABC transporter K04M3_16070 PF01171 PP-loop family K04M3_16080 PF00582 Universal stress protein family K04M3_16090 PF00027 Cyclic nucleotide-binding domain K04M3_16090 PF13545 Crp-like helix-turn-helix domain K04M3_16120 PF00403 Heavy-metal-associated domain K04M3_16140 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K04M3_16140 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP K04M3_16170 PF00115 Cytochrome C and Quinol oxidase polypeptide I K04M3_16200 PF00072 Response regulator receiver domain K04M3_16200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_16200 PF00512 His Kinase A (phospho-acceptor) domain K04M3_16200 PF09308 LuxQ, periplasmic K04M3_16230 PF17414 MatP C-terminal ribbon-helix-helix domain K04M3_16230 PF06303 MatP N-terminal domain K04M3_16240 PF13654 AAA domain K04M3_16240 PF05362 Lon protease (S16) C-terminal proteolytic domain K04M3_16250 PF07977 FabA-like domain K04M3_16260 PF04957 Ribosome modulation factor K04M3_16300 PF01170 Putative RNA methylase family UPF0020 K04M3_16300 PF10672 S-adenosylmethionine-dependent methyltransferase K04M3_16300 PF02926 THUMP domain K04M3_16310 PF07126 Cell-division protein ZapC K04M3_16320 PF01180 Dihydroorotate dehydrogenase K04M3_16330 PF05088 Bacterial NAD-glutamate dehydrogenase K04M3_16340 PF11940 Domain of unknown function (DUF3458) Ig-like fold K04M3_16340 PF01433 Peptidase family M1 domain K04M3_16340 PF17432 Domain of unknown function (DUF3458_C) ARM repeats K04M3_16360 PF17804 Tail specific protease N-terminal domain K04M3_16360 PF03572 Peptidase family S41 K04M3_16360 PF00595 PDZ domain K04M3_16360 PF11818 C-terminal domain of tail specific protease (DUF3340) K04M3_16370 PF04352 ProQ/FINO family K04M3_16370 PF17516 ProQ C-terminal domain K04M3_16380 PF13185 GAF domain K04M3_16390 PF00664 ABC transporter transmembrane region K04M3_16390 PF00005 ABC transporter K04M3_16400 PF04403 Paraquat-inducible protein A K04M3_16410 PF02470 MlaD protein K04M3_16420 PF01189 16S rRNA methyltransferase RsmB/F K04M3_16420 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF K04M3_16420 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF K04M3_16460 PF00793 DAHP synthetase I family K04M3_16470 PF04461 Protein of unknown function (DUF520) K04M3_16480 PF10414 Sirohaem synthase dimerisation region K04M3_16480 PF14824 Sirohaem biosynthesis protein central K04M3_16480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M3_16490 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_16510 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_16520 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_16530 PF00005 ABC transporter K04M3_16540 PF01027 Inhibitor of apoptosis-promoting Bax1 K04M3_16560 PF04358 DsrC like protein K04M3_16570 PF00708 Acylphosphatase K04M3_16580 PF17200 Single Cache domain 2 K04M3_16580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_16580 PF00672 HAMP domain K04M3_16590 PF17785 PUA-like domain K04M3_16590 PF10672 S-adenosylmethionine-dependent methyltransferase K04M3_16620 PF00691 OmpA family K04M3_16650 PF00691 OmpA family K04M3_16650 PF05736 OprF membrane domain K04M3_16670 PF00990 Diguanylate cyclase, GGDEF domain K04M3_16680 PF01614 Bacterial transcriptional regulator K04M3_16680 PF09339 IclR helix-turn-helix domain K04M3_16700 PF00248 Aldo/keto reductase family K04M3_16710 PF03466 LysR substrate binding domain K04M3_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_16730 PF03466 LysR substrate binding domain K04M3_16730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_16740 PF07690 Major Facilitator Superfamily K04M3_16760 PF14765 Polyketide synthase dehydratase K04M3_16760 PF08659 KR domain K04M3_16760 PF00107 Zinc-binding dehydrogenase K04M3_16760 PF08240 Alcohol dehydrogenase GroES-like domain K04M3_16760 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M3_16760 PF00698 Acyl transferase domain K04M3_16760 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M3_16760 PF16197 Ketoacyl-synthetase C-terminal extension K04M3_16760 PF00550 Phosphopantetheine attachment site K04M3_16770 PF02311 AraC-like ligand binding domain K04M3_16770 PF12833 Helix-turn-helix domain K04M3_16780 PF00857 Isochorismatase family K04M3_16790 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_16810 PF08240 Alcohol dehydrogenase GroES-like domain K04M3_16810 PF00107 Zinc-binding dehydrogenase K04M3_16820 PF02310 B12 binding domain K04M3_16820 PF00809 Pterin binding enzyme K04M3_16820 PF02965 Vitamin B12 dependent methionine synthase, activation domain K04M3_16820 PF02607 B12 binding domain K04M3_16820 PF02574 Homocysteine S-methyltransferase K04M3_16830 PF00005 ABC transporter K04M3_16840 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_16850 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_16880 PF00267 Gram-negative porin K04M3_16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_16890 PF03466 LysR substrate binding domain K04M3_16910 PF00873 AcrB/AcrD/AcrF family K04M3_16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_16920 PF03466 LysR substrate binding domain K04M3_16940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_16940 PF03466 LysR substrate binding domain K04M3_16950 PF01810 LysE type translocator K04M3_16970 PF06508 Queuosine biosynthesis protein QueC K04M3_16980 PF04055 Radical SAM superfamily K04M3_17010 PF00089 Trypsin K04M3_17030 PF16177 Acetyl-coenzyme A synthetase N-terminus K04M3_17030 PF00501 AMP-binding enzyme K04M3_17030 PF13193 AMP-binding enzyme C-terminal domain K04M3_17040 PF04303 PrpF protein K04M3_17050 PF00330 Aconitase family (aconitate hydratase) K04M3_17050 PF00694 Aconitase C-terminal domain K04M3_17060 PF00285 Citrate synthase, C-terminal domain K04M3_17120 PF01970 Tripartite tricarboxylate transporter TctA family K04M3_17140 PF01925 Sulfite exporter TauE/SafE K04M3_17150 PF16868 NMT1-like family K04M3_17160 PF05844 YopD protein K04M3_17180 PF07720 Tetratricopeptide repeat K04M3_17190 PF04792 V antigen (LcrV) protein K04M3_17210 PF09621 Type III secretion system regulator (LcrR) K04M3_17220 PF00771 FHIPEP family K04M3_17260 PF09059 TyeA K04M3_17280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M3_17280 PF02874 ATP synthase alpha/beta family, beta-barrel domain K04M3_17280 PF18269 T3SS EscN ATPase C-terminal domain K04M3_17310 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K04M3_17320 PF00813 FliP family K04M3_17330 PF01313 Bacterial export proteins, family 3 K04M3_17340 PF01311 Bacterial export proteins, family 1 K04M3_17350 PF01312 FlhB HrpN YscU SpaS Family K04M3_17360 PF12852 Cupin K04M3_17360 PF12833 Helix-turn-helix domain K04M3_17420 PF02661 Fic/DOC family K04M3_17440 PF02108 Flagellar assembly protein FliH K04M3_17460 PF01514 Secretory protein of YscJ/FliF family K04M3_17470 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI K04M3_17490 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) K04M3_17500 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF K04M3_17520 PF16697 Inner membrane component of T3SS, cytoplasmic domain K04M3_17520 PF16693 Inner membrane component of T3SS, periplasmic domain K04M3_17560 PF12833 Helix-turn-helix domain K04M3_17600 PF00171 Aldehyde dehydrogenase family K04M3_17610 PF00158 Sigma-54 interaction domain K04M3_17610 PF02954 Bacterial regulatory protein, Fis family K04M3_17610 PF01590 GAF domain K04M3_17640 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain K04M3_17640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M3_17650 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K04M3_17660 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain K04M3_17660 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain K04M3_17670 PF12833 Helix-turn-helix domain K04M3_17670 PF02311 AraC-like ligand binding domain K04M3_17680 PF00593 TonB dependent receptor K04M3_17680 PF07715 TonB-dependent Receptor Plug Domain K04M3_17690 PF12431 Transcriptional regulator K04M3_17690 PF00072 Response regulator receiver domain K04M3_17700 PF17203 Single cache domain 3 K04M3_17700 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain K04M3_17700 PF00989 PAS fold K04M3_17700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_17730 PF13533 Biotin-lipoyl like K04M3_17760 PF03466 LysR substrate binding domain K04M3_17760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_17790 PF08543 Phosphomethylpyrimidine kinase K04M3_17800 PF00155 Aminotransferase class I and II K04M3_17810 PF06826 Predicted Permease Membrane Region K04M3_17810 PF02080 TrkA-C domain K04M3_17830 PF13533 Biotin-lipoyl like K04M3_17880 PF00135 Carboxylesterase family K04M3_17910 PF01103 Surface antigen K04M3_17910 PF17243 POTRA domain TamA domain 1 K04M3_17920 PF11008 Protein of unknown function (DUF2846) K04M3_17930 PF01810 LysE type translocator K04M3_17940 PF01810 LysE type translocator K04M3_17950 PF07237 Protein of unknown function (DUF1428) K04M3_17990 PF01411 tRNA synthetases class II (A) K04M3_17990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K04M3_17990 PF02272 DHHA1 domain K04M3_18000 PF13302 Acetyltransferase (GNAT) domain K04M3_18010 PF14602 Hexapeptide repeat of succinyl-transferase K04M3_18010 PF12464 Maltose acetyltransferase K04M3_18090 PF13276 HTH-like domain K04M3_18090 PF00665 Integrase core domain K04M3_18090 PF13333 Integrase core domain K04M3_18140 PF04463 Protein of unknown function (DUF523) K04M3_18150 PF00583 Acetyltransferase (GNAT) family K04M3_18260 PF13333 Integrase core domain K04M3_18260 PF13276 HTH-like domain K04M3_18260 PF00665 Integrase core domain K04M3_18310 PF01844 HNH endonuclease K04M3_18440 PF00589 Phage integrase family K04M3_18440 PF13495 Phage integrase, N-terminal SAM-like domain K04M3_18470 PF00990 Diguanylate cyclase, GGDEF domain K04M3_18480 PF00665 Integrase core domain K04M3_18490 PF06826 Predicted Permease Membrane Region K04M3_18500 PF00282 Pyridoxal-dependent decarboxylase conserved domain K04M3_18510 PF01544 CorA-like Mg2+ transporter protein K04M3_18530 PF01699 Sodium/calcium exchanger protein K04M3_18540 PF01699 Sodium/calcium exchanger protein K04M3_18570 PF04632 Fusaric acid resistance protein family K04M3_18580 PF00529 HlyD membrane-fusion protein of T1SS K04M3_18580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_18600 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family K04M3_18620 PF02080 TrkA-C domain K04M3_18620 PF06826 Predicted Permease Membrane Region K04M3_18630 PF00999 Sodium/hydrogen exchanger family K04M3_18650 PF13007 Transposase C of IS166 homeodomain K04M3_18650 PF13005 zinc-finger binding domain of transposase IS66 K04M3_18650 PF03050 Transposase IS66 family K04M3_18650 PF13817 IS66 C-terminal element K04M3_18670 PF04976 DMSO reductase anchor subunit (DmsC) K04M3_18680 PF12800 4Fe-4S binding domain K04M3_18680 PF13247 4Fe-4S dicluster domain K04M3_18690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M3_18690 PF01568 Molydopterin dinucleotide binding domain K04M3_18690 PF00384 Molybdopterin oxidoreductase K04M3_18700 PF02613 Nitrate reductase delta subunit K04M3_18710 PF12838 4Fe-4S dicluster domain K04M3_18710 PF00037 4Fe-4S binding domain K04M3_18720 PF00072 Response regulator receiver domain K04M3_18720 PF09308 LuxQ, periplasmic K04M3_18720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_18720 PF00512 His Kinase A (phospho-acceptor) domain K04M3_18810 PF02954 Bacterial regulatory protein, Fis family K04M3_18810 PF00072 Response regulator receiver domain K04M3_18810 PF00158 Sigma-54 interaction domain K04M3_18820 PF02954 Bacterial regulatory protein, Fis family K04M3_18820 PF13185 GAF domain K04M3_18820 PF00158 Sigma-54 interaction domain K04M3_18860 PF07274 Protein of unknown function (DUF1440) K04M3_18870 PF08495 FIST N domain K04M3_18870 PF00563 EAL domain K04M3_18870 PF10442 FIST C domain K04M3_18870 PF00990 Diguanylate cyclase, GGDEF domain K04M3_18880 PF00072 Response regulator receiver domain K04M3_18880 PF00196 Bacterial regulatory proteins, luxR family K04M3_18950 PF01389 OmpA-like transmembrane domain K04M3_18950 PF00691 OmpA family K04M3_19030 PF01915 Glycosyl hydrolase family 3 C-terminal domain K04M3_19030 PF00933 Glycosyl hydrolase family 3 N terminal domain K04M3_19030 PF14310 Fibronectin type III-like domain K04M3_19040 PF13737 Transposase DDE domain K04M3_19050 PF01627 Hpt domain K04M3_19050 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_19050 PF00072 Response regulator receiver domain K04M3_19050 PF00989 PAS fold K04M3_19050 PF00512 His Kinase A (phospho-acceptor) domain K04M3_19050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_19060 PF00196 Bacterial regulatory proteins, luxR family K04M3_19060 PF00072 Response regulator receiver domain K04M3_19080 PF13737 Transposase DDE domain K04M3_19090 PF00816 H-NS histone family K04M3_19110 PF13737 Transposase DDE domain K04M3_19180 PF00857 Isochorismatase family K04M3_19310 PF09905 DNA-binding protein VF530 K04M3_19340 PF13495 Phage integrase, N-terminal SAM-like domain K04M3_19340 PF00589 Phage integrase family K04M3_19370 PF13302 Acetyltransferase (GNAT) domain K04M3_19380 PF00158 Sigma-54 interaction domain K04M3_19380 PF18024 Helix-turn-helix domain K04M3_19390 PF05128 Domain of unknown function (DUF697) K04M3_19400 PF04317 YcjX-like family, DUF463 K04M3_19430 PF04715 Anthranilate synthase component I, N terminal region K04M3_19430 PF00425 chorismate binding enzyme K04M3_19440 PF09308 LuxQ, periplasmic K04M3_19440 PF00512 His Kinase A (phospho-acceptor) domain K04M3_19440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_19440 PF00072 Response regulator receiver domain K04M3_19470 PF00293 NUDIX domain K04M3_19480 PF03222 Tryptophan/tyrosine permease family K04M3_19490 PF03313 Serine dehydratase alpha chain K04M3_19490 PF03315 Serine dehydratase beta chain K04M3_19500 PF00563 EAL domain K04M3_19500 PF04940 Sensors of blue-light using FAD K04M3_19520 PF01242 6-pyruvoyl tetrahydropterin synthase K04M3_19530 PF17200 Single Cache domain 2 K04M3_19530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_19530 PF00672 HAMP domain K04M3_19540 PF00152 tRNA synthetases class II (D, K and N) K04M3_19540 PF01336 OB-fold nucleic acid binding domain K04M3_19560 PF00155 Aminotransferase class I and II K04M3_19560 PF00392 Bacterial regulatory proteins, gntR family K04M3_19590 PF00155 Aminotransferase class I and II K04M3_19630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_19630 PF00672 HAMP domain K04M3_19640 PF02028 BCCT, betaine/carnitine/choline family transporter K04M3_19660 PF00196 Bacterial regulatory proteins, luxR family K04M3_19660 PF00072 Response regulator receiver domain K04M3_19670 PF07730 Histidine kinase K04M3_19670 PF17200 Single Cache domain 2 K04M3_19680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K04M3_19700 PF03480 Bacterial extracellular solute-binding protein, family 7 K04M3_19730 PF00753 Metallo-beta-lactamase superfamily K04M3_19740 PF05951 Bacterial protein of unknown function (DUF882) K04M3_19750 PF03734 L,D-transpeptidase catalytic domain K04M3_19750 PF01471 Putative peptidoglycan binding domain K04M3_19800 PF00925 GTP cyclohydrolase II K04M3_19820 PF03918 Cytochrome C biogenesis protein K04M3_19830 PF08534 Redoxin K04M3_19840 PF01578 Cytochrome C assembly protein K04M3_19840 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K04M3_19850 PF03916 Polysulphide reductase, NrfD K04M3_19860 PF13247 4Fe-4S dicluster domain K04M3_19880 PF02335 Cytochrome c552 K04M3_19910 PF03989 DNA gyrase C-terminal domain, beta-propeller K04M3_19910 PF00521 DNA gyrase/topoisomerase IV, subunit A K04M3_19930 PF03477 ATP cone domain K04M3_19930 PF02867 Ribonucleotide reductase, barrel domain K04M3_19930 PF00317 Ribonucleotide reductase, all-alpha domain K04M3_19940 PF00268 Ribonucleotide reductase, small chain K04M3_19960 PF00994 Probable molybdopterin binding domain K04M3_19990 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K04M3_20000 PF16653 Saccharopine dehydrogenase C-terminal domain K04M3_20000 PF03435 Saccharopine dehydrogenase NADP binding domain K04M3_20010 PF00202 Aminotransferase class-III K04M3_20060 PF01066 CDP-alcohol phosphatidyltransferase K04M3_20070 PF02151 UvrB/uvrC motif K04M3_20070 PF08459 UvrC Helix-hairpin-helix N-terminal K04M3_20070 PF01541 GIY-YIG catalytic domain K04M3_20080 PF00196 Bacterial regulatory proteins, luxR family K04M3_20080 PF00072 Response regulator receiver domain K04M3_20090 PF03104 DNA polymerase family B, exonuclease domain K04M3_20090 PF00136 DNA polymerase family B K04M3_20110 PF09285 Elongation factor P, C-terminal K04M3_20110 PF08207 Elongation factor P (EF-P) KOW-like domain K04M3_20110 PF01132 Elongation factor P (EF-P) OB domain K04M3_20120 PF04269 Protein of unknown function, DUF440 K04M3_20130 PF01479 S4 domain K04M3_20130 PF00849 RNA pseudouridylate synthase K04M3_20150 PF01300 Telomere recombination K04M3_20160 PF02811 PHP domain K04M3_20170 PF08056 Tryptophan operon leader peptide K04M3_20180 PF04715 Anthranilate synthase component I, N terminal region K04M3_20180 PF00425 chorismate binding enzyme K04M3_20190 PF00117 Glutamine amidotransferase class-I K04M3_20200 PF00591 Glycosyl transferase family, a/b domain K04M3_20200 PF02885 Glycosyl transferase family, helical bundle domain K04M3_20210 PF00218 Indole-3-glycerol phosphate synthase K04M3_20210 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K04M3_20220 PF00291 Pyridoxal-phosphate dependent enzyme K04M3_20230 PF00290 Tryptophan synthase alpha chain K04M3_20240 PF13545 Crp-like helix-turn-helix domain K04M3_20240 PF00027 Cyclic nucleotide-binding domain K04M3_20250 PF00501 AMP-binding enzyme K04M3_20250 PF13193 AMP-binding enzyme C-terminal domain K04M3_20260 PF00375 Sodium:dicarboxylate symporter family K04M3_20270 PF17327 Acyl homoserine lactone synthase K04M3_20280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_20280 PF00072 Response regulator receiver domain K04M3_20300 PF04279 Intracellular septation protein A K04M3_20310 PF03061 Thioesterase superfamily K04M3_20320 PF03795 YCII-related domain K04M3_20340 PF08267 Cobalamin-independent synthase, N-terminal domain K04M3_20340 PF01717 Cobalamin-independent synthase, Catalytic domain K04M3_20350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_20350 PF03466 LysR substrate binding domain K04M3_20380 PF00563 EAL domain K04M3_20380 PF00990 Diguanylate cyclase, GGDEF domain K04M3_20380 PF08447 PAS fold K04M3_20380 PF08448 PAS fold K04M3_20390 PF04055 Radical SAM superfamily K04M3_20390 PF11842 Domain of unknown function (DUF3362) K04M3_20390 PF08497 Radical SAM N-terminal K04M3_20430 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase K04M3_20440 PF00535 Glycosyl transferase family 2 K04M3_20450 PF00486 Transcriptional regulatory protein, C terminal K04M3_20450 PF00072 Response regulator receiver domain K04M3_20460 PF00672 HAMP domain K04M3_20460 PF00512 His Kinase A (phospho-acceptor) domain K04M3_20460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_20490 PF03466 LysR substrate binding domain K04M3_20490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_20500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_20500 PF00529 HlyD membrane-fusion protein of T1SS K04M3_20520 PF08267 Cobalamin-independent synthase, N-terminal domain K04M3_20520 PF01717 Cobalamin-independent synthase, Catalytic domain K04M3_20560 PF12704 MacB-like periplasmic core domain K04M3_20560 PF02687 FtsX-like permease family K04M3_20560 PF00005 ABC transporter K04M3_20570 PF02687 FtsX-like permease family K04M3_20570 PF00005 ABC transporter K04M3_20570 PF12704 MacB-like periplasmic core domain K04M3_20580 PF02687 FtsX-like permease family K04M3_20580 PF00005 ABC transporter K04M3_20580 PF12704 MacB-like periplasmic core domain K04M3_20600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_20630 PF05958 tRNA (Uracil-5-)-methyltransferase K04M3_20630 PF01938 TRAM domain K04M3_20650 PF00085 Thioredoxin K04M3_20660 PF11412 Disulphide bond corrector protein DsbC K04M3_20660 PF02683 Cytochrome C biogenesis protein transmembrane region K04M3_20660 PF13098 Thioredoxin-like domain K04M3_20680 PF00196 Bacterial regulatory proteins, luxR family K04M3_20680 PF00072 Response regulator receiver domain K04M3_20690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_20690 PF00512 His Kinase A (phospho-acceptor) domain K04M3_20700 PF13247 4Fe-4S dicluster domain K04M3_20710 PF03916 Polysulphide reductase, NrfD K04M3_20720 PF00384 Molybdopterin oxidoreductase K04M3_20720 PF01568 Molydopterin dinucleotide binding domain K04M3_20720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M3_20730 PF00034 Cytochrome c K04M3_20740 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K04M3_20750 PF04403 Paraquat-inducible protein A K04M3_20760 PF02470 MlaD protein K04M3_20800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_20810 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family K04M3_20820 PF18073 Rubredoxin metal binding domain K04M3_20830 PF06305 Lipopolysaccharide assembly protein A domain K04M3_20840 PF00216 Bacterial DNA-binding protein K04M3_20850 PF00575 S1 RNA binding domain K04M3_20860 PF02224 Cytidylate kinase K04M3_20870 PF08496 Peptidase family S49 N-terminal K04M3_20870 PF01343 Peptidase family S49 K04M3_20880 PF00106 short chain dehydrogenase K04M3_20910 PF01336 OB-fold nucleic acid binding domain K04M3_20910 PF02811 PHP domain K04M3_20910 PF07733 Bacterial DNA polymerase III alpha NTPase domain K04M3_20910 PF14579 Helix-hairpin-helix motif K04M3_20910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K04M3_20920 PF01584 CheW-like domain K04M3_20920 PF00072 Response regulator receiver domain K04M3_20930 PF00480 ROK family K04M3_20940 PF02887 Pyruvate kinase, alpha/beta domain K04M3_20940 PF00224 Pyruvate kinase, barrel domain K04M3_20950 PF01734 Patatin-like phospholipase K04M3_20980 PF00209 Sodium:neurotransmitter symporter family K04M3_21010 PF02378 Phosphotransferase system, EIIC K04M3_21010 PF00367 phosphotransferase system, EIIB K04M3_21020 PF01026 TatD related DNase K04M3_21030 PF09115 DNA polymerase III, delta subunit, C terminal K04M3_21040 PF02223 Thymidylate kinase K04M3_21050 PF02618 YceG-like family K04M3_21060 PF01063 Amino-transferase class IV K04M3_21070 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M3_21070 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M3_21080 PF00550 Phosphopantetheine attachment site K04M3_21100 PF00698 Acyl transferase domain K04M3_21110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K04M3_21110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K04M3_21120 PF02504 Fatty acid synthesis protein K04M3_21130 PF01783 Ribosomal L32p protein family K04M3_21140 PF02620 Large ribosomal RNA subunit accumulation protein YceD K04M3_21150 PF02545 Maf-like protein K04M3_21160 PF01479 S4 domain K04M3_21160 PF00849 RNA pseudouridylate synthase K04M3_21170 PF12111 Polyribonucleotide phosphorylase C terminal K04M3_21170 PF00575 S1 RNA binding domain K04M3_21170 PF10150 Ribonuclease E/G family K04M3_21180 PF01740 STAS domain K04M3_21180 PF00916 Sulfate permease family K04M3_21190 PF01451 Low molecular weight phosphotyrosine protein phosphatase K04M3_21200 PF12557 Cob(I)alamin adenosyltransferase N terminal K04M3_21200 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K04M3_21220 PF00485 Phosphoribulokinase / Uridine kinase family K04M3_21230 PF10609 NUBPL iron-transfer P-loop NTPase K04M3_21240 PF09334 tRNA synthetases class I (M) K04M3_21240 PF01588 Putative tRNA binding domain K04M3_21280 PF00392 Bacterial regulatory proteins, gntR family K04M3_21280 PF07840 FadR C-terminal domain K04M3_21290 PF06450 Bacterial Na+/H+ antiporter B (NhaB) K04M3_21300 PF02600 Disulfide bond formation protein DsbB K04M3_21310 PF03695 Uncharacterised protein family (UPF0149) K04M3_21310 PF02810 SEC-C motif K04M3_21320 PF01207 Dihydrouridine synthase (Dus) K04M3_21330 PF00990 Diguanylate cyclase, GGDEF domain K04M3_21330 PF17158 Membrane-associated sensor, integral membrane domain K04M3_21340 PF00128 Alpha amylase, catalytic domain K04M3_21340 PF02903 Alpha amylase, N-terminal ig-like domain K04M3_21350 PF00005 ABC transporter K04M3_21360 PF02653 Branched-chain amino acid transport system / permease component K04M3_21380 PF04217 Protein of unknown function, DUF412 K04M3_21390 PF00871 Acetokinase family K04M3_21400 PF07085 DRTGG domain K04M3_21400 PF01515 Phosphate acetyl/butaryl transferase K04M3_21420 PF13409 Glutathione S-transferase, N-terminal domain K04M3_21430 PF00005 ABC transporter K04M3_21430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_21440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_21440 PF00005 ABC transporter K04M3_21450 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_21450 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M3_21460 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_21470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_21480 PF02391 MoaE protein K04M3_21490 PF02597 ThiS family K04M3_21500 PF01967 MoaC family K04M3_21510 PF00994 Probable molybdopterin binding domain K04M3_21520 PF06463 Molybdenum Cofactor Synthesis C K04M3_21520 PF04055 Radical SAM superfamily K04M3_21530 PF01933 Uncharacterised protein family UPF0052 K04M3_21540 PF01627 Hpt domain K04M3_21550 PF00158 Sigma-54 interaction domain K04M3_21550 PF00072 Response regulator receiver domain K04M3_21550 PF02954 Bacterial regulatory protein, Fis family K04M3_21560 PF00271 Helicase conserved C-terminal domain K04M3_21560 PF02151 UvrB/uvrC motif K04M3_21560 PF12344 Ultra-violet resistance protein B K04M3_21560 PF17757 UvrB interaction domain K04M3_21560 PF04851 Type III restriction enzyme, res subunit K04M3_21580 PF01228 Glycine radical K04M3_21580 PF02901 Pyruvate formate lyase-like K04M3_21590 PF02508 Rnf-Nqr subunit, membrane protein K04M3_21600 PF04060 Putative Fe-S cluster K04M3_21610 PF10531 SLBB domain K04M3_21610 PF13375 RnfC Barrel sandwich hybrid domain K04M3_21610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit K04M3_21610 PF12838 4Fe-4S dicluster domain K04M3_21620 PF03116 NQR2, RnfD, RnfE family K04M3_21630 PF04205 FMN-binding domain K04M3_21640 PF02508 Rnf-Nqr subunit, membrane protein K04M3_21650 PF10576 Iron-sulfur binding domain of endonuclease III K04M3_21650 PF00730 HhH-GPD superfamily base excision DNA repair protein K04M3_21650 PF00633 Helix-hairpin-helix motif K04M3_21660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M3_21670 PF10952 Protein of unknown function (DUF2753) K04M3_21680 PF00691 OmpA family K04M3_21680 PF18393 MotY N-terminal domain K04M3_21690 PF00929 Exonuclease K04M3_21700 PF03553 Na+/H+ antiporter family K04M3_21700 PF13726 Na+-H+ antiporter family K04M3_21740 PF00462 Glutaredoxin K04M3_21750 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K04M3_21750 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K04M3_21780 PF00171 Aldehyde dehydrogenase family K04M3_21780 PF00465 Iron-containing alcohol dehydrogenase K04M3_21790 PF01914 MarC family integral membrane protein K04M3_21800 PF00520 Ion transport protein K04M3_21800 PF00027 Cyclic nucleotide-binding domain K04M3_21810 PF01118 Semialdehyde dehydrogenase, NAD binding domain K04M3_21810 PF02774 Semialdehyde dehydrogenase, dimerisation domain K04M3_21820 PF03553 Na+/H+ antiporter family K04M3_21850 PF04245 37-kD nucleoid-associated bacterial protein K04M3_21860 PF07208 Protein of unknown function (DUF1414) K04M3_21870 PF11893 Domain of unknown function (DUF3413) K04M3_21870 PF00884 Sulfatase K04M3_21890 PF00850 Histone deacetylase domain K04M3_21900 PF00106 short chain dehydrogenase K04M3_21920 PF01751 Toprim domain K04M3_21920 PF01131 DNA topoisomerase K04M3_21930 PF00881 Nitroreductase family K04M3_21950 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M3_21950 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_21960 PF01343 Peptidase family S49 K04M3_21970 PF17763 Glutaminase/Asparaginase C-terminal domain K04M3_21970 PF00710 Asparaginase, N-terminal K04M3_21980 PF07023 Protein of unknown function (DUF1315) K04M3_22000 PF01641 SelR domain K04M3_22010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M3_22010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K04M3_22020 PF01263 Aldose 1-epimerase K04M3_22030 PF08447 PAS fold K04M3_22030 PF13426 PAS domain K04M3_22030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_22040 PF13847 Methyltransferase domain K04M3_22070 PF00245 Alkaline phosphatase K04M3_22090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M3_22100 PF03992 Antibiotic biosynthesis monooxygenase K04M3_22110 PF05552 Conserved TM helix K04M3_22110 PF00924 Mechanosensitive ion channel K04M3_22120 PF03692 Putative zinc- or iron-chelating domain K04M3_22130 PF04226 Transglycosylase associated protein K04M3_22140 PF03692 Putative zinc- or iron-chelating domain K04M3_22150 PF00230 Major intrinsic protein K04M3_22160 PF13662 Toprim domain K04M3_22160 PF02132 RecR protein K04M3_22170 PF02575 YbaB/EbfC DNA-binding family K04M3_22180 PF12169 DNA polymerase III subunits gamma and tau domain III K04M3_22180 PF12170 DNA polymerase III tau subunit V interacting with alpha K04M3_22180 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding K04M3_22190 PF00156 Phosphoribosyl transferase domain K04M3_22200 PF04304 Protein of unknown function (DUF454) K04M3_22220 PF00072 Response regulator receiver domain K04M3_22230 PF03466 LysR substrate binding domain K04M3_22230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_22240 PF00156 Phosphoribosyl transferase domain K04M3_22250 PF02674 Colicin V production protein K04M3_22260 PF05036 Sporulation related domain K04M3_22270 PF02875 Mur ligase family, glutamate ligase domain K04M3_22270 PF08245 Mur ligase middle domain K04M3_22280 PF01039 Carboxyl transferase domain K04M3_22280 PF17848 Acetyl-coA carboxylase zinc finger domain K04M3_22290 PF01416 tRNA pseudouridine synthase K04M3_22310 PF02774 Semialdehyde dehydrogenase, dimerisation domain K04M3_22310 PF01118 Semialdehyde dehydrogenase, NAD binding domain K04M3_22320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K04M3_22320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M3_22320 PF11890 Domain of unknown function (DUF3410) K04M3_22330 PF02801 Beta-ketoacyl synthase, C-terminal domain K04M3_22330 PF00109 Beta-ketoacyl synthase, N-terminal domain K04M3_22340 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K04M3_22340 PF01266 FAD dependent oxidoreductase K04M3_22350 PF03358 NADPH-dependent FMN reductase K04M3_22360 PF08891 YfcL protein K04M3_22370 PF04315 Elongation factor P hydroxylase K04M3_22380 PF03458 UPF0126 domain K04M3_22390 PF01264 Chorismate synthase K04M3_22400 PF05175 Methyltransferase small domain K04M3_22410 PF01713 Smr domain K04M3_22420 PF00300 Histidine phosphatase superfamily (branch 1) K04M3_22430 PF00675 Insulinase (Peptidase family M16) K04M3_22430 PF16187 Middle or third domain of peptidase_M16 K04M3_22430 PF05193 Peptidase M16 inactive domain K04M3_22450 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K04M3_22450 PF00378 Enoyl-CoA hydratase/isomerase K04M3_22450 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K04M3_22460 PF02803 Thiolase, C-terminal domain K04M3_22460 PF00108 Thiolase, N-terminal domain K04M3_22480 PF04542 Sigma-70 region 2 K04M3_22480 PF08281 Sigma-70, region 4 K04M3_22500 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M3_22510 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M3_22520 PF04333 MlaA lipoprotein K04M3_22530 PF03918 Cytochrome C biogenesis protein K04M3_22540 PF03918 Cytochrome C biogenesis protein K04M3_22550 PF08534 Redoxin K04M3_22560 PF01578 Cytochrome C assembly protein K04M3_22560 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K04M3_22570 PF03100 CcmE K04M3_22580 PF04995 Heme exporter protein D (CcmD) K04M3_22590 PF01578 Cytochrome C assembly protein K04M3_22600 PF03379 CcmB protein K04M3_22610 PF00005 ABC transporter K04M3_22630 PF01584 CheW-like domain K04M3_22650 PF13614 AAA domain K04M3_22660 PF00072 Response regulator receiver domain K04M3_22660 PF01339 CheB methylesterase K04M3_22670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_22670 PF01584 CheW-like domain K04M3_22670 PF02895 Signal transducing histidine kinase, homodimeric domain K04M3_22670 PF01627 Hpt domain K04M3_22670 PF07194 P2 response regulator binding domain K04M3_22680 PF04344 Chemotaxis phosphatase, CheZ K04M3_22690 PF00072 Response regulator receiver domain K04M3_22700 PF04542 Sigma-70 region 2 K04M3_22700 PF04545 Sigma-70, region 4 K04M3_22700 PF04539 Sigma-70 region 3 K04M3_22710 PF10609 NUBPL iron-transfer P-loop NTPase K04M3_22720 PF00448 SRP54-type protein, GTPase domain K04M3_22730 PF00771 FHIPEP family K04M3_22740 PF01312 FlhB HrpN YscU SpaS Family K04M3_22750 PF01311 Bacterial export proteins, family 1 K04M3_22760 PF01313 Bacterial export proteins, family 3 K04M3_22770 PF00813 FliP family K04M3_22780 PF04347 Flagellar biosynthesis protein, FliO K04M3_22790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K04M3_22800 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K04M3_22800 PF02154 Flagellar motor switch protein FliM K04M3_22850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M3_22850 PF18269 T3SS EscN ATPase C-terminal domain K04M3_22870 PF14841 FliG middle domain K04M3_22870 PF14842 FliG N-terminal domain K04M3_22870 PF01706 FliG C-terminal domain K04M3_22880 PF01514 Secretory protein of YscJ/FliF family K04M3_22880 PF08345 Flagellar M-ring protein C-terminal K04M3_22890 PF02049 Flagellar hook-basal body complex protein FliE K04M3_22900 PF00158 Sigma-54 interaction domain K04M3_22900 PF00072 Response regulator receiver domain K04M3_22900 PF02954 Bacterial regulatory protein, Fis family K04M3_22910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_22910 PF00512 His Kinase A (phospho-acceptor) domain K04M3_22920 PF02954 Bacterial regulatory protein, Fis family K04M3_22920 PF00158 Sigma-54 interaction domain K04M3_22920 PF00072 Response regulator receiver domain K04M3_22930 PF02561 Flagellar protein FliS K04M3_22950 PF02465 Flagellar hook-associated protein 2 N-terminus K04M3_22950 PF07196 Flagellin hook IN motif K04M3_22950 PF07195 Flagellar hook-associated protein 2 C-terminus K04M3_22960 PF03646 FlaG protein K04M3_22970 PF00700 Bacterial flagellin C-terminal helical region K04M3_22970 PF07196 Flagellin hook IN motif K04M3_22970 PF00669 Bacterial flagellin N-terminal helical region K04M3_22980 PF00669 Bacterial flagellin N-terminal helical region K04M3_22980 PF07196 Flagellin hook IN motif K04M3_22980 PF00700 Bacterial flagellin C-terminal helical region K04M3_22990 PF00669 Bacterial flagellin N-terminal helical region K04M3_22990 PF07196 Flagellin hook IN motif K04M3_22990 PF00700 Bacterial flagellin C-terminal helical region K04M3_23000 PF04261 Dyp-type peroxidase family K04M3_23010 PF11143 Protein of unknown function (DUF2919) K04M3_23050 PF03960 ArsC family K04M3_23060 PF07687 Peptidase dimerisation domain K04M3_23060 PF01546 Peptidase family M20/M25/M40 K04M3_23100 PF00701 Dihydrodipicolinate synthetase family K04M3_23120 PF00578 AhpC/TSA family K04M3_23170 PF00578 AhpC/TSA family K04M3_23190 PF02910 Fumarate reductase flavoprotein C-term K04M3_23190 PF00890 FAD binding domain K04M3_23200 PF03412 Peptidase C39 family K04M3_23200 PF00005 ABC transporter K04M3_23200 PF00664 ABC transporter transmembrane region K04M3_23210 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_23210 PF00529 HlyD membrane-fusion protein of T1SS K04M3_23250 PF00535 Glycosyl transferase family 2 K04M3_23300 PF02954 Bacterial regulatory protein, Fis family K04M3_23320 PF13361 UvrD-like helicase C-terminal domain K04M3_23320 PF00580 UvrD/REP helicase N-terminal domain K04M3_23350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_23350 PF00512 His Kinase A (phospho-acceptor) domain K04M3_23350 PF00072 Response regulator receiver domain K04M3_23350 PF09308 LuxQ, periplasmic K04M3_23360 PF01527 Transposase K04M3_23390 PF00313 'Cold-shock' DNA-binding domain K04M3_23440 PF00313 'Cold-shock' DNA-binding domain K04M3_23450 PF02899 Phage integrase, N-terminal SAM-like domain K04M3_23450 PF00589 Phage integrase family K04M3_23460 PF01145 SPFH domain / Band 7 family K04M3_23460 PF12221 Bacterial membrane protein N terminal K04M3_23480 PF06965 Na+/H+ antiporter 1 K04M3_23490 PF00330 Aconitase family (aconitate hydratase) K04M3_23490 PF00694 Aconitase C-terminal domain K04M3_23500 PF00313 'Cold-shock' DNA-binding domain K04M3_23530 PF00578 AhpC/TSA family K04M3_23540 PF01594 AI-2E family transporter K04M3_23560 PF01435 Peptidase family M48 K04M3_23560 PF13181 Tetratricopeptide repeat K04M3_23570 PF03960 ArsC family K04M3_23580 PF03358 NADPH-dependent FMN reductase K04M3_23610 PF00860 Permease family K04M3_23630 PF00586 AIR synthase related protein, N-terminal domain K04M3_23630 PF02769 AIR synthase related protein, C-terminal domain K04M3_23640 PF00551 Formyl transferase K04M3_23660 PF13230 Glutamine amidotransferases class-II K04M3_23670 PF13580 SIS domain K04M3_23680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M3_23680 PF02770 Acyl-CoA dehydrogenase, middle domain K04M3_23680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M3_23680 PF09317 Domain of unknown function (DUF1974) K04M3_23690 PF01740 STAS domain K04M3_23690 PF00916 Sulfate permease family K04M3_23740 PF00929 Exonuclease K04M3_23750 PF00075 RNase H K04M3_23760 PF08241 Methyltransferase domain K04M3_23770 PF16123 Hydroxyacylglutathione hydrolase C-terminus K04M3_23770 PF00753 Metallo-beta-lactamase superfamily K04M3_23780 PF01464 Transglycosylase SLT domain K04M3_23780 PF01476 LysM domain K04M3_23800 PF03372 Endonuclease/Exonuclease/phosphatase family K04M3_23810 PF00543 Nitrogen regulatory protein P-II K04M3_23820 PF00034 Cytochrome c K04M3_23830 PF01171 PP-loop family K04M3_23830 PF11734 TilS substrate C-terminal domain K04M3_23830 PF09179 TilS substrate binding domain K04M3_23840 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit K04M3_23850 PF14579 Helix-hairpin-helix motif K04M3_23850 PF02811 PHP domain K04M3_23850 PF01336 OB-fold nucleic acid binding domain K04M3_23850 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K04M3_23850 PF07733 Bacterial DNA polymerase III alpha NTPase domain K04M3_23860 PF01351 Ribonuclease HII K04M3_23870 PF02684 Lipid-A-disaccharide synthetase K04M3_23880 PF00132 Bacterial transferase hexapeptide (six repeats) K04M3_23880 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 K04M3_23890 PF07977 FabA-like domain K04M3_23900 PF00132 Bacterial transferase hexapeptide (six repeats) K04M3_23900 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K04M3_23910 PF03938 Outer membrane protein (OmpH-like) K04M3_23920 PF07244 Surface antigen variable number repeat K04M3_23920 PF01103 Surface antigen K04M3_23930 PF17820 PDZ domain K04M3_23930 PF02163 Peptidase family M50 K04M3_23940 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase K04M3_23940 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain K04M3_23940 PF13288 DXP reductoisomerase C-terminal domain K04M3_23960 PF01255 Putative undecaprenyl diphosphate synthase K04M3_23970 PF01765 Ribosome recycling factor K04M3_23980 PF00696 Amino acid kinase family K04M3_23990 PF00889 Elongation factor TS K04M3_24000 PF00318 Ribosomal protein S2 K04M3_24010 PF00557 Metallopeptidase family M24 K04M3_24020 PF08335 GlnD PII-uridylyltransferase K04M3_24020 PF01909 Nucleotidyltransferase domain K04M3_24020 PF01966 HD domain K04M3_24020 PF01842 ACT domain K04M3_24030 PF11944 Protein of unknown function (DUF3461) K04M3_24040 PF00849 RNA pseudouridylate synthase K04M3_24050 PF04287 tRNA pseudouridine synthase C K04M3_24100 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 K04M3_24110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K04M3_24110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K04M3_24120 PF01370 NAD dependent epimerase/dehydratase family K04M3_24170 PF03806 AbgT putative transporter family K04M3_24180 PF01197 Ribosomal protein L31 K04M3_24190 PF18389 TrmO C-terminal domain K04M3_24190 PF01980 tRNA-methyltransferase O K04M3_24200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K04M3_24200 PF03129 Anticodon binding domain K04M3_24200 PF04073 Aminoacyl-tRNA editing domain K04M3_24220 PF06786 Uncharacterised protein family (UPF0253) K04M3_24240 PF00209 Sodium:neurotransmitter symporter family K04M3_24250 PF06483 Chitinase C K04M3_24250 PF00704 Glycosyl hydrolases family 18 K04M3_24270 PF03449 Transcription elongation factor, N-terminal K04M3_24270 PF01272 Transcription elongation factor, GreA/GreB, C-term K04M3_24280 PF00570 HRDC domain K04M3_24280 PF09382 RQC domain K04M3_24280 PF00270 DEAD/DEAH box helicase K04M3_24280 PF00271 Helicase conserved C-terminal domain K04M3_24280 PF16124 RecQ zinc-binding K04M3_24330 PF11798 IMS family HHH motif K04M3_24330 PF00817 impB/mucB/samB family K04M3_24330 PF11799 impB/mucB/samB family C-terminal domain K04M3_24490 PF01740 STAS domain K04M3_24490 PF00916 Sulfate permease family K04M3_24500 PF00582 Universal stress protein family K04M3_24510 PF00958 GMP synthase C terminal domain K04M3_24510 PF00117 Glutamine amidotransferase class-I K04M3_24510 PF03352 Methyladenine glycosylase K04M3_24510 PF13302 Acetyltransferase (GNAT) domain K04M3_24510 PF13673 Acetyltransferase (GNAT) domain K04M3_24610 PF11799 impB/mucB/samB family C-terminal domain K04M3_24610 PF11798 IMS family HHH motif K04M3_24610 PF00817 impB/mucB/samB family K04M3_24630 PF00990 Diguanylate cyclase, GGDEF domain K04M3_24630 PF00072 Response regulator receiver domain K04M3_24650 PF02424 ApbE family K04M3_24660 PF00970 Oxidoreductase FAD-binding domain K04M3_24660 PF00175 Oxidoreductase NAD-binding domain K04M3_24660 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M3_24670 PF02508 Rnf-Nqr subunit, membrane protein K04M3_24680 PF02508 Rnf-Nqr subunit, membrane protein K04M3_24690 PF04205 FMN-binding domain K04M3_24700 PF03116 NQR2, RnfD, RnfE family K04M3_24710 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) K04M3_24710 PF11973 NQRA C-terminal domain K04M3_24720 PF01722 BolA-like protein K04M3_24730 PF05175 Methyltransferase small domain K04M3_24740 PF08139 Prokaryotic membrane lipoprotein lipid attachment site K04M3_24740 PF03923 Uncharacterized lipoprotein K04M3_24750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K04M3_24760 PF07690 Major Facilitator Superfamily K04M3_24780 PF04542 Sigma-70 region 2 K04M3_24780 PF04545 Sigma-70, region 4 K04M3_24810 PF03502 Nucleoside-specific channel-forming protein, Tsx K04M3_24820 PF02558 Ketopantoate reductase PanE/ApbA K04M3_24820 PF08546 Ketopantoate reductase PanE/ApbA C terminal K04M3_24830 PF01965 DJ-1/PfpI family K04M3_24840 PF00266 Aminotransferase class-V K04M3_24850 PF00990 Diguanylate cyclase, GGDEF domain K04M3_24850 PF17158 Membrane-associated sensor, integral membrane domain K04M3_24860 PF02657 Fe-S metabolism associated domain K04M3_24870 PF00899 ThiF family K04M3_24880 PF03562 MltA specific insert domain K04M3_24880 PF06725 3D domain K04M3_24900 PF00583 Acetyltransferase (GNAT) family K04M3_24900 PF00696 Amino acid kinase family K04M3_24920 PF13538 UvrD-like helicase C-terminal domain K04M3_24930 PF00580 UvrD/REP helicase N-terminal domain K04M3_24930 PF13361 UvrD-like helicase C-terminal domain K04M3_24930 PF12705 PD-(D/E)XK nuclease superfamily K04M3_24940 PF17946 RecC C-terminal domain K04M3_24950 PF08676 MutL C terminal dimerisation domain K04M3_24950 PF01119 DNA mismatch repair protein, C-terminal domain K04M3_25010 PF00665 Integrase core domain K04M3_25020 PF01527 Transposase K04M3_25040 PF00145 C-5 cytosine-specific DNA methylase K04M3_25050 PF00145 C-5 cytosine-specific DNA methylase K04M3_25060 PF11893 Domain of unknown function (DUF3413) K04M3_25060 PF00884 Sulfatase K04M3_25080 PF03466 LysR substrate binding domain K04M3_25080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_25090 PF07130 YebG protein K04M3_25120 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle K04M3_25120 PF14602 Hexapeptide repeat of succinyl-transferase K04M3_25130 PF03009 Glycerophosphoryl diester phosphodiesterase family K04M3_25140 PF07690 Major Facilitator Superfamily K04M3_25150 PF00230 Major intrinsic protein K04M3_25160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain K04M3_25160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain K04M3_25170 PF08220 DeoR-like helix-turn-helix domain K04M3_25170 PF00455 DeoR C terminal sensor domain K04M3_25180 PF16901 C-terminal domain of alpha-glycerophosphate oxidase K04M3_25180 PF01266 FAD dependent oxidoreductase K04M3_25190 PF01544 CorA-like Mg2+ transporter protein K04M3_25230 PF00356 Bacterial regulatory proteins, lacI family K04M3_25240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_25240 PF03466 LysR substrate binding domain K04M3_25260 PF00196 Bacterial regulatory proteins, luxR family K04M3_25320 PF00501 AMP-binding enzyme K04M3_25340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_25340 PF03466 LysR substrate binding domain K04M3_25350 PF00009 Elongation factor Tu GTP binding domain K04M3_25350 PF00679 Elongation factor G C-terminus K04M3_25350 PF03764 Elongation factor G, domain IV K04M3_25350 PF03144 Elongation factor Tu domain 2 K04M3_25350 PF14492 Elongation Factor G, domain II K04M3_25360 PF18073 Rubredoxin metal binding domain K04M3_25380 PF18429 Domain of unknown function (DUF5609) K04M3_25400 PF01048 Phosphorylase superfamily K04M3_25410 PF01676 Metalloenzyme superfamily K04M3_25420 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain K04M3_25420 PF02885 Glycosyl transferase family, helical bundle domain K04M3_25420 PF00591 Glycosyl transferase family, a/b domain K04M3_25430 PF01791 DeoC/LacD family aldolase K04M3_25440 PF07662 Na+ dependent nucleoside transporter C-terminus K04M3_25440 PF07670 Nucleoside recognition K04M3_25440 PF01773 Na+ dependent nucleoside transporter N-terminus K04M3_25450 PF01026 TatD related DNase K04M3_25470 PF00009 Elongation factor Tu GTP binding domain K04M3_25470 PF16658 Class II release factor RF3, C-terminal domain K04M3_25470 PF03144 Elongation factor Tu domain 2 K04M3_25510 PF13508 Acetyltransferase (GNAT) domain K04M3_25530 PF00563 EAL domain K04M3_25530 PF00990 Diguanylate cyclase, GGDEF domain K04M3_25530 PF03707 Bacterial signalling protein N terminal repeat K04M3_25560 PF01554 MatE K04M3_25580 PF13181 Tetratricopeptide repeat K04M3_25580 PF07719 Tetratricopeptide repeat K04M3_25590 PF01138 3' exoribonuclease family, domain 1 K04M3_25590 PF03725 3' exoribonuclease family, domain 2 K04M3_25590 PF00575 S1 RNA binding domain K04M3_25590 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain K04M3_25590 PF00013 KH domain K04M3_25600 PF00312 Ribosomal protein S15 K04M3_25610 PF09157 Pseudouridine synthase II TruB, C-terminal K04M3_25610 PF16198 tRNA pseudouridylate synthase B C-terminal domain K04M3_25610 PF01509 TruB family pseudouridylate synthase (N terminal domain) K04M3_25620 PF02033 Ribosome-binding factor A K04M3_25630 PF04760 Translation initiation factor IF-2, N-terminal region K04M3_25630 PF11987 Translation-initiation factor 2 K04M3_25630 PF00009 Elongation factor Tu GTP binding domain K04M3_25630 PF08364 Bacterial translation initiation factor IF-2 associated region K04M3_25640 PF00575 S1 RNA binding domain K04M3_25640 PF13184 NusA-like KH domain K04M3_25640 PF08529 NusA N-terminal domain K04M3_25650 PF02576 RimP N-terminal domain K04M3_25650 PF17384 RimP C-terminal SH3 domain K04M3_25680 PF03840 Preprotein translocase SecG subunit K04M3_25690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K04M3_25690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K04M3_25690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K04M3_25690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K04M3_25700 PF00809 Pterin binding enzyme K04M3_25710 PF17862 AAA+ lid domain K04M3_25710 PF06480 FtsH Extracellular K04M3_25710 PF00004 ATPase family associated with various cellular activities (AAA) K04M3_25710 PF01434 Peptidase family M41 K04M3_25720 PF01728 FtsJ-like methyltransferase K04M3_25730 PF01985 CRS1 / YhbY (CRM) domain K04M3_25740 PF01272 Transcription elongation factor, GreA/GreB, C-term K04M3_25740 PF03449 Transcription elongation factor, N-terminal K04M3_25750 PF13609 Gram-negative porin K04M3_25760 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family K04M3_25780 PF00579 tRNA synthetases class I (W and Y) K04M3_25790 PF01551 Peptidase family M23 K04M3_25790 PF08525 Opacity-associated protein A N-terminal motif K04M3_25790 PF01476 LysM domain K04M3_25800 PF00873 AcrB/AcrD/AcrF family K04M3_25820 PF01521 Iron-sulphur cluster biosynthesis K04M3_25830 PF00202 Aminotransferase class-III K04M3_25840 PF01594 AI-2E family transporter K04M3_25850 PF08468 Methyltransferase small domain N-terminal K04M3_25850 PF05175 Methyltransferase small domain K04M3_25860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_25860 PF00512 His Kinase A (phospho-acceptor) domain K04M3_25860 PF09308 LuxQ, periplasmic K04M3_25860 PF00072 Response regulator receiver domain K04M3_25870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_25880 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_25890 PF12911 N-terminal TM domain of oligopeptide transport permease C K04M3_25890 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_25900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_25900 PF00005 ABC transporter K04M3_25910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_25910 PF00005 ABC transporter K04M3_25930 PF01869 BadF/BadG/BcrA/BcrD ATPase family K04M3_25940 PF02838 Glycosyl hydrolase family 20, domain 2 K04M3_25940 PF00728 Glycosyl hydrolase family 20, catalytic domain K04M3_25950 PF06165 Glycosyltransferase family 36 K04M3_25950 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain K04M3_25960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K04M3_25960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K04M3_25960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K04M3_25960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K04M3_25970 PF08402 TOBE domain K04M3_25970 PF00005 ABC transporter K04M3_25990 PF13416 Bacterial extracellular solute-binding protein K04M3_26000 PF00909 Ammonium Transporter Family K04M3_26010 PF00543 Nitrogen regulatory protein P-II K04M3_26020 PF06062 Uncharacterised protein family (UPF0231) K04M3_26030 PF11791 Aconitate B N-terminal domain K04M3_26030 PF06434 Aconitate hydratase 2 N-terminus K04M3_26030 PF00330 Aconitase family (aconitate hydratase) K04M3_26040 PF01734 Patatin-like phospholipase K04M3_26050 PF00912 Transglycosylase K04M3_26050 PF00905 Penicillin binding protein transpeptidase domain K04M3_26050 PF14814 Bifunctional transglycosylase second domain K04M3_26060 PF08482 ATP-dependent helicase C-terminal K04M3_26060 PF00270 DEAD/DEAH box helicase K04M3_26060 PF04408 Helicase associated domain (HA2) K04M3_26060 PF00271 Helicase conserved C-terminal domain K04M3_26070 PF17746 SfsA N-terminal OB domain K04M3_26070 PF03749 Sugar fermentation stimulation protein RE domain K04M3_26080 PF01258 Prokaryotic dksA/traR C4-type zinc finger K04M3_26090 PF00749 tRNA synthetases class I (E and Q), catalytic domain K04M3_26100 PF12626 Polymerase A arginine-rich C-terminus K04M3_26100 PF12627 Probable RNA and SrmB- binding site of polymerase A K04M3_26100 PF01743 Poly A polymerase head domain K04M3_26110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K04M3_26120 PF02548 Ketopantoate hydroxymethyltransferase K04M3_26130 PF02569 Pantoate-beta-alanine ligase K04M3_26140 PF03279 Bacterial lipid A biosynthesis acyltransferase K04M3_26150 PF01061 ABC-2 type transporter K04M3_26160 PF00005 ABC transporter K04M3_26170 PF00916 Sulfate permease family K04M3_26170 PF01740 STAS domain K04M3_26180 PF00484 Carbonic anhydrase K04M3_26190 PF00156 Phosphoribosyl transferase domain K04M3_26200 PF00440 Bacterial regulatory proteins, tetR family K04M3_26210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M3_26210 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_26220 PF02817 e3 binding domain K04M3_26220 PF00364 Biotin-requiring enzyme K04M3_26220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K04M3_26230 PF17831 Pyruvate dehydrogenase E1 component middle domain K04M3_26230 PF00456 Transketolase, thiamine diphosphate binding domain K04M3_26240 PF00392 Bacterial regulatory proteins, gntR family K04M3_26240 PF07729 FCD domain K04M3_26250 PF01510 N-acetylmuramoyl-L-alanine amidase K04M3_26260 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain K04M3_26260 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain K04M3_26270 PF07963 Prokaryotic N-terminal methylation motif K04M3_26270 PF00114 Pilin (bacterial filament) K04M3_26280 PF00437 Type II/IV secretion system protein K04M3_26280 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K04M3_26290 PF00482 Type II secretion system (T2SS), protein F K04M3_26300 PF06750 Bacterial Peptidase A24 N-terminal domain K04M3_26300 PF01478 Type IV leader peptidase family K04M3_26310 PF01121 Dephospho-CoA kinase K04M3_26320 PF07072 Cell division protein K04M3_26330 PF03884 DNA gyrase inhibitor YacG K04M3_26340 PF01245 Ribosomal protein L19 K04M3_26350 PF01746 tRNA (Guanine-1)-methyltransferase K04M3_26360 PF01782 RimM N-terminal domain K04M3_26360 PF05239 PRC-barrel domain K04M3_26370 PF00886 Ribosomal protein S16 K04M3_26380 PF02978 Signal peptide binding domain K04M3_26380 PF02881 SRP54-type protein, helical bundle domain K04M3_26380 PF00448 SRP54-type protein, GTPase domain K04M3_26390 PF01578 Cytochrome C assembly protein K04M3_26400 PF00571 CBS domain K04M3_26400 PF03471 Transporter associated domain K04M3_26400 PF01595 Cyclin M transmembrane N-terminal domain K04M3_26410 PF02664 S-Ribosylhomocysteinase (LuxS) K04M3_26430 PF04262 Glutamate-cysteine ligase K04M3_26440 PF05193 Peptidase M16 inactive domain K04M3_26440 PF00675 Insulinase (Peptidase family M16) K04M3_26450 PF09335 SNARE associated Golgi protein K04M3_26470 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit K04M3_26480 PF00682 HMGL-like K04M3_26480 PF00364 Biotin-requiring enzyme K04M3_26480 PF02436 Conserved carboxylase domain K04M3_26490 PF04277 Oxaloacetate decarboxylase, gamma chain K04M3_26600 PF02599 Global regulator protein family K04M3_26610 PF00696 Amino acid kinase family K04M3_26610 PF13840 ACT domain K04M3_26610 PF01842 ACT domain K04M3_26620 PF01411 tRNA synthetases class II (A) K04M3_26620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K04M3_26620 PF02272 DHHA1 domain K04M3_26630 PF02631 RecX family K04M3_26640 PF00154 recA bacterial DNA recombination protein K04M3_26650 PF02464 Competence-damaged protein K04M3_26660 PF00488 MutS domain V K04M3_26660 PF05192 MutS domain III K04M3_26660 PF05188 MutS domain II K04M3_26660 PF01624 MutS domain I K04M3_26660 PF05190 MutS family domain IV K04M3_26670 PF00140 Sigma-70 factor, region 1.2 K04M3_26670 PF04542 Sigma-70 region 2 K04M3_26670 PF04539 Sigma-70 region 3 K04M3_26670 PF04545 Sigma-70, region 4 K04M3_26680 PF01551 Peptidase family M23 K04M3_26680 PF01476 LysM domain K04M3_26700 PF01975 Survival protein SurE K04M3_26710 PF01142 tRNA pseudouridine synthase D (TruD) K04M3_26720 PF02542 YgbB family K04M3_26730 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K04M3_26740 PF04977 Septum formation initiator K04M3_26750 PF03952 Enolase, N-terminal domain K04M3_26750 PF00113 Enolase, C-terminal TIM barrel domain K04M3_26760 PF06418 CTP synthase N-terminus K04M3_26760 PF00117 Glutamine amidotransferase class-I K04M3_26770 PF03819 MazG nucleotide pyrophosphohydrolase domain K04M3_26790 PF02824 TGS domain K04M3_26790 PF13291 ACT domain K04M3_26790 PF04607 Region found in RelA / SpoT proteins K04M3_26800 PF01938 TRAM domain K04M3_26800 PF05958 tRNA (Uracil-5-)-methyltransferase K04M3_26810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K04M3_26810 PF00072 Response regulator receiver domain K04M3_26810 PF01627 Hpt domain K04M3_26810 PF00672 HAMP domain K04M3_26810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_26810 PF00512 His Kinase A (phospho-acceptor) domain K04M3_26820 PF01648 4'-phosphopantetheinyl transferase superfamily K04M3_26830 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ K04M3_26840 PF11967 Recombination protein O N terminal K04M3_26840 PF02565 Recombination protein O C terminal K04M3_26850 PF01926 50S ribosome-binding GTPase K04M3_26850 PF07650 KH domain K04M3_26860 PF14622 Ribonuclease-III-like K04M3_26860 PF00035 Double-stranded RNA binding motif K04M3_26870 PF10502 Signal peptidase, peptidase S26 K04M3_26880 PF03144 Elongation factor Tu domain 2 K04M3_26880 PF00009 Elongation factor Tu GTP binding domain K04M3_26880 PF00679 Elongation factor G C-terminus K04M3_26880 PF06421 GTP-binding protein LepA C-terminus K04M3_26900 PF03888 MucB/RseB N-terminal domain K04M3_26900 PF17188 MucB/RseB C-terminal domain K04M3_26910 PF03872 Anti sigma-E protein RseA, N-terminal domain K04M3_26910 PF03873 Anti sigma-E protein RseA, C-terminal domain K04M3_26920 PF04542 Sigma-70 region 2 K04M3_26920 PF08281 Sigma-70, region 4 K04M3_26930 PF00890 FAD binding domain K04M3_26930 PF02910 Fumarate reductase flavoprotein C-term K04M3_26950 PF03937 Flavinator of succinate dehydrogenase K04M3_26990 PF01494 FAD binding domain K04M3_27000 PF01494 FAD binding domain K04M3_27010 PF03695 Uncharacterised protein family (UPF0149) K04M3_27020 PF05164 Cell division protein ZapA K04M3_27030 PF01812 5-formyltetrahydrofolate cyclo-ligase family K04M3_27040 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) K04M3_27050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M3_27050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K04M3_27050 PF01842 ACT domain K04M3_27060 PF04402 Protein of unknown function (DUF541) K04M3_27070 PF03466 LysR substrate binding domain K04M3_27070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_27080 PF01810 LysE type translocator K04M3_27100 PF05552 Conserved TM helix K04M3_27100 PF00924 Mechanosensitive ion channel K04M3_27110 PF01116 Fructose-bisphosphate aldolase class-II K04M3_27120 PF00162 Phosphoglycerate kinase K04M3_27130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M3_27130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K04M3_27140 PF07715 TonB-dependent Receptor Plug Domain K04M3_27140 PF00593 TonB dependent receptor K04M3_27150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_27150 PF03466 LysR substrate binding domain K04M3_27160 PF00456 Transketolase, thiamine diphosphate binding domain K04M3_27160 PF02779 Transketolase, pyrimidine binding domain K04M3_27160 PF02780 Transketolase, C-terminal domain K04M3_27170 PF00438 S-adenosylmethionine synthetase, N-terminal domain K04M3_27170 PF02773 S-adenosylmethionine synthetase, C-terminal domain K04M3_27170 PF02772 S-adenosylmethionine synthetase, central domain K04M3_27190 PF10263 SprT-like family K04M3_27190 PF17283 SprT-like zinc ribbon domain K04M3_27200 PF04231 Endonuclease I K04M3_27210 PF04452 RNA methyltransferase K04M3_27220 PF02951 Prokaryotic glutathione synthetase, N-terminal domain K04M3_27220 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain K04M3_27230 PF02622 Uncharacterized ACR, COG1678 K04M3_27240 PF03652 Holliday junction resolvase K04M3_27250 PF00437 Type II/IV secretion system protein K04M3_27260 PF00437 Type II/IV secretion system protein K04M3_27270 PF01168 Alanine racemase, N-terminal domain K04M3_27280 PF14748 Pyrroline-5-carboxylate reductase dimerisation K04M3_27280 PF03807 NADP oxidoreductase coenzyme F420-dependent K04M3_27290 PF02325 YGGT family K04M3_27300 PF02594 Uncharacterised ACR, YggU family COG1872 K04M3_27320 PF01725 Ham1 family K04M3_27330 PF04055 Radical SAM superfamily K04M3_27330 PF06969 HemN C-terminal domain K04M3_27340 PF04960 Glutaminase K04M3_27350 PF02086 D12 class N6 adenine-specific DNA methyltransferase K04M3_27360 PF02390 Putative methyltransferase K04M3_27370 PF00633 Helix-hairpin-helix motif K04M3_27370 PF14815 NUDIX domain K04M3_27370 PF00730 HhH-GPD superfamily base excision DNA repair protein K04M3_27380 PF04362 Bacterial Fe(2+) trafficking K04M3_27390 PF01464 Transglycosylase SLT domain K04M3_27390 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain K04M3_27470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_27470 PF00672 HAMP domain K04M3_27470 PF17200 Single Cache domain 2 K04M3_27530 PF00171 Aldehyde dehydrogenase family K04M3_27640 PF04794 YdjC-like protein K04M3_27650 PF11975 Family 4 glycosyl hydrolase C-terminal domain K04M3_27650 PF02056 Family 4 glycosyl hydrolase K04M3_27660 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit K04M3_27670 PF02378 Phosphotransferase system, EIIC K04M3_27680 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K04M3_27690 PF01522 Polysaccharide deacetylase K04M3_27720 PF10011 Predicted membrane protein (DUF2254) K04M3_27740 PF03739 Lipopolysaccharide export system permease LptF/LptG K04M3_27750 PF03739 Lipopolysaccharide export system permease LptF/LptG K04M3_27760 PF00883 Cytosol aminopeptidase family, catalytic domain K04M3_27760 PF02789 Cytosol aminopeptidase family, N-terminal domain K04M3_27770 PF04364 DNA polymerase III chi subunit, HolC K04M3_27780 PF10458 Valyl tRNA synthetase tRNA binding arm K04M3_27780 PF00133 tRNA synthetases class I (I, L, M and V) K04M3_27780 PF08264 Anticodon-binding domain of tRNA K04M3_27800 PF00583 Acetyltransferase (GNAT) family K04M3_27820 PF06877 Regulator of ribonuclease activity B K04M3_27840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K04M3_27840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K04M3_27860 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K04M3_27860 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K04M3_27870 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain K04M3_27870 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain K04M3_27880 PF01042 Endoribonuclease L-PSP K04M3_27890 PF01553 Acyltransferase K04M3_27900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K04M3_27910 PF01722 BolA-like protein K04M3_27930 PF05494 MlaC protein K04M3_27940 PF02470 MlaD protein K04M3_27950 PF02405 Permease MlaE K04M3_27960 PF00005 ABC transporter K04M3_27970 PF01699 Sodium/calcium exchanger protein K04M3_27980 PF00571 CBS domain K04M3_27980 PF01380 SIS domain K04M3_28000 PF03968 OstA-like protein K04M3_28010 PF00005 ABC transporter K04M3_28010 PF12399 Branched-chain amino acid ATP-binding cassette transporter K04M3_28020 PF04963 Sigma-54 factor, core binding domain K04M3_28020 PF04552 Sigma-54, DNA binding domain K04M3_28020 PF00309 Sigma-54 factor, Activator interacting domain (AID) K04M3_28030 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K04M3_28040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K04M3_28050 PF03668 P-loop ATPase protein family K04M3_28060 PF00381 PTS HPr component phosphorylation site K04M3_28070 PF03448 MgtE intracellular N domain K04M3_28070 PF01769 Divalent cation transporter K04M3_28070 PF00571 CBS domain K04M3_28080 PF01523 Putative modulator of DNA gyrase K04M3_28090 PF04751 Protein of unknown function (DUF615) K04M3_28100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K04M3_28100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M3_28110 PF00849 RNA pseudouridylate synthase K04M3_28130 PF18337 RapA N-terminal Tudor like domain K04M3_28130 PF00176 SNF2 family N-terminal domain K04M3_28130 PF18339 RapA N-terminal Tudor like domain 1 K04M3_28130 PF00271 Helicase conserved C-terminal domain K04M3_28130 PF12137 RNA polymerase recycling family C-terminal K04M3_28140 PF02562 PhoH-like protein K04M3_28140 PF13638 PIN domain K04M3_28150 PF01523 Putative modulator of DNA gyrase K04M3_28160 PF00795 Carbon-nitrogen hydrolase K04M3_28170 PF13502 AsmA-like C-terminal region K04M3_28170 PF13116 Protein of unknown function K04M3_28180 PF10150 Ribonuclease E/G family K04M3_28180 PF00575 S1 RNA binding domain K04M3_28190 PF02545 Maf-like protein K04M3_28200 PF04093 rod shape-determining protein MreD K04M3_28210 PF04085 rod shape-determining protein MreC K04M3_28290 PF07963 Prokaryotic N-terminal methylation motif K04M3_28290 PF08334 Type II secretion system (T2SS), protein G K04M3_28310 PF00482 Type II secretion system (T2SS), protein F K04M3_28320 PF00437 Type II/IV secretion system protein K04M3_28340 PF01471 Putative peptidoglycan binding domain K04M3_28340 PF13401 AAA domain K04M3_28350 PF00263 Bacterial type II and III secretion system protein K04M3_28350 PF03958 Bacterial type II/III secretion system short domain K04M3_28390 PF00990 Diguanylate cyclase, GGDEF domain K04M3_28390 PF17157 Gammaproteobacterial periplasmic sensor domain K04M3_28390 PF00563 EAL domain K04M3_28400 PF00436 Single-strand binding protein family K04M3_28410 PF00196 Bacterial regulatory proteins, luxR family K04M3_28420 PF00483 Nucleotidyl transferase K04M3_28430 PF17760 UvrA interaction domain K04M3_28430 PF00005 ABC transporter K04M3_28430 PF17755 UvrA DNA-binding domain K04M3_28470 PF00266 Aminotransferase class-V K04M3_28480 PF00696 Amino acid kinase family K04M3_28480 PF01842 ACT domain K04M3_28490 PF02965 Vitamin B12 dependent methionine synthase, activation domain K04M3_28490 PF02574 Homocysteine S-methyltransferase K04M3_28490 PF00809 Pterin binding enzyme K04M3_28490 PF02310 B12 binding domain K04M3_28490 PF02607 B12 binding domain K04M3_28500 PF00999 Sodium/hydrogen exchanger family K04M3_28620 PF01507 Phosphoadenosine phosphosulfate reductase family K04M3_28630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K04M3_28630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K04M3_28640 PF00175 Oxidoreductase NAD-binding domain K04M3_28640 PF00667 FAD binding domain K04M3_28640 PF00258 Flavodoxin K04M3_28680 PF01207 Dihydrouridine synthase (Dus) K04M3_28690 PF01475 Ferric uptake regulator family K04M3_28710 PF00342 Phosphoglucose isomerase K04M3_28720 PF01894 Uncharacterised protein family UPF0047 K04M3_28730 PF00842 Alanine racemase, C-terminal domain K04M3_28730 PF01168 Alanine racemase, N-terminal domain K04M3_28740 PF03796 DnaB-like helicase C terminal domain K04M3_28740 PF00772 DnaB-like helicase N terminal domain K04M3_28760 PF01281 Ribosomal protein L9, N-terminal domain K04M3_28760 PF03948 Ribosomal protein L9, C-terminal domain K04M3_28770 PF01084 Ribosomal protein S18 K04M3_28780 PF00436 Single-strand binding protein family K04M3_28790 PF01250 Ribosomal protein S6 K04M3_28800 PF00834 Ribulose-phosphate 3 epimerase family K04M3_28810 PF02086 D12 class N6 adenine-specific DNA methyltransferase K04M3_28830 PF01761 3-dehydroquinate synthase K04M3_28840 PF01202 Shikimate kinase K04M3_28850 PF07660 Secretin and TonB N terminus short domain K04M3_28850 PF00263 Bacterial type II and III secretion system protein K04M3_28850 PF03958 Bacterial type II/III secretion system short domain K04M3_28850 PF11741 AMIN domain K04M3_28900 PF00912 Transglycosylase K04M3_28900 PF00905 Penicillin binding protein transpeptidase domain K04M3_28900 PF17092 Penicillin-binding protein OB-like domain K04M3_28910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_28910 PF03466 LysR substrate binding domain K04M3_28920 PF08534 Redoxin K04M3_28920 PF00462 Glutaredoxin K04M3_28930 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_28930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M3_28960 PF00206 Lyase K04M3_28960 PF14698 Argininosuccinate lyase C-terminal K04M3_28960 PF00583 Acetyltransferase (GNAT) family K04M3_28970 PF00764 Arginosuccinate synthase K04M3_28980 PF00696 Amino acid kinase family K04M3_28990 PF02774 Semialdehyde dehydrogenase, dimerisation domain K04M3_28990 PF01118 Semialdehyde dehydrogenase, NAD binding domain K04M3_29000 PF01546 Peptidase family M20/M25/M40 K04M3_29000 PF07687 Peptidase dimerisation domain K04M3_29010 PF00311 Phosphoenolpyruvate carboxylase K04M3_29030 PF02219 Methylenetetrahydrofolate reductase K04M3_29040 PF00742 Homoserine dehydrogenase K04M3_29040 PF00696 Amino acid kinase family K04M3_29040 PF03447 Homoserine dehydrogenase, NAD binding domain K04M3_29050 PF01053 Cys/Met metabolism PLP-dependent enzyme K04M3_29070 PF03949 Malic enzyme, NAD binding domain K04M3_29070 PF00390 Malic enzyme, N-terminal domain K04M3_29080 PF00210 Ferritin-like domain K04M3_29090 PF04324 BFD-like [2Fe-2S] binding domain K04M3_29100 PF00009 Elongation factor Tu GTP binding domain K04M3_29100 PF03144 Elongation factor Tu domain 2 K04M3_29100 PF03143 Elongation factor Tu C-terminal domain K04M3_29110 PF00679 Elongation factor G C-terminus K04M3_29110 PF14492 Elongation Factor G, domain II K04M3_29110 PF03764 Elongation factor G, domain IV K04M3_29110 PF03144 Elongation factor Tu domain 2 K04M3_29110 PF00009 Elongation factor Tu GTP binding domain K04M3_29120 PF00177 Ribosomal protein S7p/S5e K04M3_29130 PF00164 Ribosomal protein S12/S23 K04M3_29140 PF04077 DsrH like protein K04M3_29150 PF02635 DsrE/DsrF-like family K04M3_29160 PF02635 DsrE/DsrF-like family K04M3_29170 PF13309 HTH domain K04M3_29170 PF08348 YheO-like PAS domain K04M3_29180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M3_29180 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K04M3_29200 PF04102 SlyX K04M3_29210 PF01112 Asparaginase K04M3_29220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M3_29240 PF02254 TrkA-N domain K04M3_29240 PF00999 Sodium/hydrogen exchanger family K04M3_29250 PF02525 Flavodoxin-like fold K04M3_29260 PF12848 ABC transporter K04M3_29260 PF00005 ABC transporter K04M3_29280 PF00561 alpha/beta hydrolase fold K04M3_29290 PF06794 Uncharacterised protein family (UPF0270) K04M3_29300 PF00485 Phosphoribulokinase / Uridine kinase family K04M3_29310 PF00027 Cyclic nucleotide-binding domain K04M3_29310 PF13545 Crp-like helix-turn-helix domain K04M3_29330 PF00171 Aldehyde dehydrogenase family K04M3_29340 PF04958 Arginine N-succinyltransferase beta subunit K04M3_29350 PF00202 Aminotransferase class-III K04M3_29360 PF00117 Glutamine amidotransferase class-I K04M3_29390 PF00579 tRNA synthetases class I (W and Y) K04M3_29400 PF13419 Haloacid dehalogenase-like hydrolase K04M3_29410 PF00588 SpoU rRNA Methylase family K04M3_29410 PF08032 RNA 2'-O ribose methyltransferase substrate binding K04M3_29420 PF00575 S1 RNA binding domain K04M3_29420 PF00773 RNB domain K04M3_29420 PF08206 Ribonuclease B OB domain K04M3_29420 PF08461 Ribonuclease R winged-helix domain K04M3_29420 PF17876 Cold shock domain K04M3_29430 PF02082 Transcriptional regulator K04M3_29440 PF00175 Oxidoreductase NAD-binding domain K04M3_29440 PF00042 Globin K04M3_29440 PF00970 Oxidoreductase FAD-binding domain K04M3_29450 PF08238 Sel1 repeat K04M3_29460 PF00709 Adenylosuccinate synthetase K04M3_29470 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) K04M3_29480 PF01145 SPFH domain / Band 7 family K04M3_29490 PF01145 SPFH domain / Band 7 family K04M3_29490 PF12221 Bacterial membrane protein N terminal K04M3_29500 PF13167 GTP-binding GTPase N-terminal K04M3_29500 PF16360 GTP-binding GTPase Middle Region K04M3_29500 PF01926 50S ribosome-binding GTPase K04M3_29510 PF17209 Hfq protein K04M3_29530 PF01119 DNA mismatch repair protein, C-terminal domain K04M3_29530 PF08676 MutL C terminal dimerisation domain K04M3_29540 PF01520 N-acetylmuramoyl-L-alanine amidase K04M3_29550 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE K04M3_29570 PF08331 Domain of unknown function (DUF1730) K04M3_29700 PF00929 Exonuclease K04M3_29710 PF03193 RsgA GTPase K04M3_29720 PF02666 Phosphatidylserine decarboxylase K04M3_29730 PF00939 Sodium:sulfate symporter transmembrane region K04M3_29750 PF06415 BPG-independent PGAM N-terminus (iPGM_N) K04M3_29750 PF01676 Metalloenzyme superfamily K04M3_29760 PF00581 Rhodanese-like domain K04M3_29770 PF02556 Preprotein translocase subunit SecB K04M3_29780 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K04M3_29780 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K04M3_29790 PF00132 Bacterial transferase hexapeptide (six repeats) K04M3_29790 PF06426 Serine acetyltransferase, N-terminal K04M3_29800 PF01551 Peptidase family M23 K04M3_29820 PF08360 QacR-like protein, C-terminal region K04M3_29820 PF00440 Bacterial regulatory proteins, tetR family K04M3_29840 PF00152 tRNA synthetases class II (D, K and N) K04M3_29850 PF00890 FAD binding domain K04M3_29850 PF02910 Fumarate reductase flavoprotein C-term K04M3_29860 PF13085 2Fe-2S iron-sulfur cluster binding domain K04M3_29860 PF13183 4Fe-4S dicluster domain K04M3_29870 PF02300 Fumarate reductase subunit C K04M3_29880 PF02313 Fumarate reductase subunit D K04M3_29900 PF01132 Elongation factor P (EF-P) OB domain K04M3_29900 PF08207 Elongation factor P (EF-P) KOW-like domain K04M3_29900 PF09285 Elongation factor P, C-terminal K04M3_29910 PF04055 Radical SAM superfamily K04M3_29920 PF02308 MgtC family K04M3_29940 PF00118 TCP-1/cpn60 chaperonin family K04M3_29950 PF00166 Chaperonin 10 Kd subunit K04M3_29960 PF01554 MatE K04M3_29970 PF00365 Phosphofructokinase K04M3_29980 PF01545 Cation efflux family K04M3_29980 PF16916 Dimerisation domain of Zinc Transporter K04M3_29990 PF07813 LTXXQ motif family protein K04M3_30000 PF00072 Response regulator receiver domain K04M3_30000 PF00486 Transcriptional regulatory protein, C terminal K04M3_30010 PF16527 Two-component sensor protein CpxA, periplasmic domain K04M3_30010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_30010 PF00512 His Kinase A (phospho-acceptor) domain K04M3_30010 PF00672 HAMP domain K04M3_30020 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K04M3_30020 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K04M3_30030 PF00588 SpoU rRNA Methylase family K04M3_30040 PF04186 FxsA cytoplasmic membrane protein K04M3_30050 PF00206 Lyase K04M3_30050 PF10415 Fumarase C C-terminus K04M3_30060 PF03605 Anaerobic c4-dicarboxylate membrane transporter K04M3_30070 PF02683 Cytochrome C biogenesis protein transmembrane region K04M3_30070 PF11412 Disulphide bond corrector protein DsbC K04M3_30080 PF00196 Bacterial regulatory proteins, luxR family K04M3_30080 PF00072 Response regulator receiver domain K04M3_30090 PF02080 TrkA-C domain K04M3_30090 PF03471 Transporter associated domain K04M3_30090 PF00999 Sodium/hydrogen exchanger family K04M3_30110 PF00474 Sodium:solute symporter family K04M3_30140 PF10415 Fumarase C C-terminus K04M3_30140 PF00206 Lyase K04M3_30150 PF00512 His Kinase A (phospho-acceptor) domain K04M3_30150 PF00072 Response regulator receiver domain K04M3_30150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_30150 PF09308 LuxQ, periplasmic K04M3_30160 PF12832 MFS_1 like family K04M3_30190 PF13193 AMP-binding enzyme C-terminal domain K04M3_30190 PF00501 AMP-binding enzyme K04M3_30190 PF16177 Acetyl-coenzyme A synthetase N-terminus K04M3_30200 PF01220 Dehydroquinase class II K04M3_30210 PF00364 Biotin-requiring enzyme K04M3_30220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K04M3_30220 PF00289 Biotin carboxylase, N-terminal domain K04M3_30220 PF02785 Biotin carboxylase C-terminal domain K04M3_30240 PF01207 Dihydrouridine synthase (Dus) K04M3_30250 PF02954 Bacterial regulatory protein, Fis family K04M3_30270 PF12848 ABC transporter K04M3_30270 PF00005 ABC transporter K04M3_30370 PF01276 Orn/Lys/Arg decarboxylase, major domain K04M3_30370 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain K04M3_30370 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain K04M3_30380 PF13520 Amino acid permease K04M3_30390 PF18500 CadC C-terminal domain 1 K04M3_30390 PF00486 Transcriptional regulatory protein, C terminal K04M3_30400 PF13411 MerR HTH family regulatory protein K04M3_30410 PF01808 AICARFT/IMPCHase bienzyme K04M3_30410 PF02142 MGS-like domain K04M3_30420 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K04M3_30420 PF02844 Phosphoribosylglycinamide synthetase, N domain K04M3_30420 PF02843 Phosphoribosylglycinamide synthetase, C domain K04M3_30440 PF00216 Bacterial DNA-binding protein K04M3_30450 PF01595 Cyclin M transmembrane N-terminal domain K04M3_30450 PF00571 CBS domain K04M3_30460 PF04222 Protein of unknown function (DUF416) K04M3_30470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M3_30480 PF03167 Uracil DNA glycosylase superfamily K04M3_30490 PF01208 Uroporphyrinogen decarboxylase (URO-D) K04M3_30500 PF00293 NUDIX domain K04M3_30500 PF09297 NADH pyrophosphatase zinc ribbon domain K04M3_30510 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ K04M3_30520 PF04983 RNA polymerase Rpb1, domain 3 K04M3_30520 PF05000 RNA polymerase Rpb1, domain 4 K04M3_30520 PF00623 RNA polymerase Rpb1, domain 2 K04M3_30520 PF04997 RNA polymerase Rpb1, domain 1 K04M3_30520 PF04998 RNA polymerase Rpb1, domain 5 K04M3_30530 PF00562 RNA polymerase Rpb2, domain 6 K04M3_30530 PF10385 RNA polymerase beta subunit external 1 domain K04M3_30530 PF04565 RNA polymerase Rpb2, domain 3 K04M3_30530 PF04560 RNA polymerase Rpb2, domain 7 K04M3_30530 PF04563 RNA polymerase beta subunit K04M3_30530 PF04561 RNA polymerase Rpb2, domain 2 K04M3_30540 PF00542 Ribosomal protein L7/L12 C-terminal domain K04M3_30540 PF16320 Ribosomal protein L7/L12 dimerisation domain K04M3_30550 PF00466 Ribosomal protein L10 K04M3_30560 PF00687 Ribosomal protein L1p/L10e family K04M3_30570 PF03946 Ribosomal protein L11, N-terminal domain K04M3_30570 PF00298 Ribosomal protein L11, RNA binding domain K04M3_30580 PF00467 KOW motif K04M3_30580 PF02357 Transcription termination factor nusG K04M3_30590 PF00584 SecE/Sec61-gamma subunits of protein translocation complex K04M3_30600 PF03143 Elongation factor Tu C-terminal domain K04M3_30600 PF00009 Elongation factor Tu GTP binding domain K04M3_30600 PF03144 Elongation factor Tu domain 2 K04M3_30650 PF00485 Phosphoribulokinase / Uridine kinase family K04M3_30660 PF03099 Biotin/lipoate A/B protein ligase family K04M3_30660 PF02237 Biotin protein ligase C terminal domain K04M3_30660 PF08279 HTH domain K04M3_30670 PF01565 FAD binding domain K04M3_30670 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K04M3_30690 PF13091 PLD-like domain K04M3_30840 PF01177 Asp/Glu/Hydantoin racemase K04M3_30860 PF07715 TonB-dependent Receptor Plug Domain K04M3_30860 PF00593 TonB dependent receptor K04M3_30870 PF05958 tRNA (Uracil-5-)-methyltransferase K04M3_30890 PF00440 Bacterial regulatory proteins, tetR family K04M3_30900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M3_30900 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_30910 PF01554 MatE K04M3_30920 PF04072 Leucine carboxyl methyltransferase K04M3_30930 PF01726 LexA DNA binding domain K04M3_30930 PF00717 Peptidase S24-like K04M3_30940 PF01553 Acyltransferase K04M3_30950 PF01040 UbiA prenyltransferase family K04M3_30960 PF04345 Chorismate lyase K04M3_30970 PF03748 Flagellar basal body-associated protein FliL K04M3_30980 PF01694 Rhomboid family K04M3_30980 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease K04M3_30990 PF00581 Rhodanese-like domain K04M3_31000 PF04545 Sigma-70, region 4 K04M3_31000 PF04542 Sigma-70 region 2 K04M3_31000 PF00140 Sigma-70 factor, region 1.2 K04M3_31010 PF18075 FtsX extracellular domain K04M3_31020 PF00005 ABC transporter K04M3_31030 PF02881 SRP54-type protein, helical bundle domain K04M3_31030 PF00448 SRP54-type protein, GTPase domain K04M3_31060 PF01914 MarC family integral membrane protein K04M3_31100 PF10694 Protein of unknown function (DUF2500) K04M3_31140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K04M3_31140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M3_31150 PF01022 Bacterial regulatory protein, arsR family K04M3_31160 PF08668 HDOD domain K04M3_31160 PF00563 EAL domain K04M3_31170 PF01810 LysE type translocator K04M3_31180 PF12146 Serine aminopeptidase, S33 K04M3_31230 PF00990 Diguanylate cyclase, GGDEF domain K04M3_31230 PF00563 EAL domain K04M3_31230 PF08495 FIST N domain K04M3_31230 PF10442 FIST C domain K04M3_31240 PF13419 Haloacid dehalogenase-like hydrolase K04M3_31250 PF00589 Phage integrase family K04M3_31250 PF02899 Phage integrase, N-terminal SAM-like domain K04M3_31270 PF01678 Diaminopimelate epimerase K04M3_31280 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K04M3_31280 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K04M3_31290 PF01491 Frataxin-like domain K04M3_31300 PF12633 Adenylate cyclase NT domain K04M3_31300 PF01295 Adenylate cyclase, class-I K04M3_31310 PF03900 Porphobilinogen deaminase, C-terminal domain K04M3_31310 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain K04M3_31320 PF02602 Uroporphyrinogen-III synthase HemD K04M3_31330 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase K04M3_31340 PF07219 HemY protein N-terminus K04M3_31420 PF00175 Oxidoreductase NAD-binding domain K04M3_31430 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M3_31440 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K04M3_31460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M3_31460 PF07498 Rho termination factor, N-terminal domain K04M3_31460 PF07497 Rho termination factor, RNA-binding domain K04M3_31470 PF00085 Thioredoxin K04M3_31480 PF00270 DEAD/DEAH box helicase K04M3_31480 PF00271 Helicase conserved C-terminal domain K04M3_31490 PF02541 Ppx/GppA phosphatase family K04M3_31510 PF02592 Putative vitamin uptake transporter K04M3_31530 PF00270 DEAD/DEAH box helicase K04M3_31530 PF00271 Helicase conserved C-terminal domain K04M3_31530 PF00570 HRDC domain K04M3_31530 PF16124 RecQ zinc-binding K04M3_31530 PF09382 RQC domain K04M3_31540 PF00892 EamA-like transporter family K04M3_31560 PF01810 LysE type translocator K04M3_31580 PF13361 UvrD-like helicase C-terminal domain K04M3_31580 PF00580 UvrD/REP helicase N-terminal domain K04M3_31600 PF05114 Protein of unknown function (DUF692) K04M3_31640 PF07690 Major Facilitator Superfamily K04M3_31650 PF03466 LysR substrate binding domain K04M3_31650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_31660 PF00557 Metallopeptidase family M24 K04M3_31660 PF01321 Creatinase/Prolidase N-terminal domain K04M3_31660 PF00557 Metallopeptidase family M24 K04M3_31660 PF01321 Creatinase/Prolidase N-terminal domain K04M3_31670 PF06968 Biotin and Thiamin Synthesis associated domain K04M3_31670 PF04055 Radical SAM superfamily K04M3_31680 PF05690 Thiazole biosynthesis protein ThiG K04M3_31690 PF02597 ThiS family K04M3_31700 PF00899 ThiF family K04M3_31710 PF02581 Thiamine monophosphate synthase K04M3_31720 PF01964 Radical SAM ThiC family K04M3_31720 PF13667 ThiC-associated domain K04M3_31730 PF02537 CrcB-like protein, Camphor Resistance (CrcB) K04M3_31740 PF07731 Multicopper oxidase K04M3_31740 PF00394 Multicopper oxidase K04M3_31740 PF07732 Multicopper oxidase K04M3_31840 PF00132 Bacterial transferase hexapeptide (six repeats) K04M3_31850 PF07369 Protein of unknown function (DUF1488) K04M3_31860 PF08501 Shikimate dehydrogenase substrate binding domain K04M3_31860 PF01488 Shikimate / quinate 5-dehydrogenase K04M3_31860 PF18317 Shikimate 5'-dehydrogenase C-terminal domain K04M3_31870 PF01218 Coproporphyrinogen III oxidase K04M3_31880 PF01300 Telomere recombination K04M3_31890 PF00731 AIR carboxylase K04M3_31900 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain K04M3_31900 PF02222 ATP-grasp domain K04M3_31910 PF01396 Topoisomerase DNA binding C4 zinc finger K04M3_31920 PF04361 Protein of unknown function (DUF494) K04M3_31930 PF02481 DNA recombination-mediator protein A K04M3_31930 PF17782 DprA winged helix domain K04M3_31950 PF01327 Polypeptide deformylase K04M3_31960 PF00551 Formyl transferase K04M3_31960 PF02911 Formyl transferase, C-terminal domain K04M3_31970 PF01029 NusB family K04M3_31970 PF01189 16S rRNA methyltransferase RsmB/F K04M3_31980 PF02080 TrkA-C domain K04M3_31980 PF02254 TrkA-N domain K04M3_31990 PF02386 Cation transport protein K04M3_32010 PF03006 Haemolysin-III related K04M3_32020 PF07070 SpoOM protein K04M3_32040 PF06288 Protein of unknown function (DUF1040) K04M3_32050 PF13746 4Fe-4S dicluster domain K04M3_32050 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase K04M3_32050 PF12801 4Fe-4S binding domain K04M3_32060 PF01636 Phosphotransferase enzyme family K04M3_32070 PF01323 DSBA-like thioredoxin domain K04M3_32080 PF01553 Acyltransferase K04M3_32100 PF01078 Magnesium chelatase, subunit ChlI K04M3_32100 PF13335 Magnesium chelatase, subunit ChlI C-terminal K04M3_32110 PF00205 Thiamine pyrophosphate enzyme, central domain K04M3_32110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K04M3_32110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K04M3_32130 PF01063 Amino-transferase class IV K04M3_32140 PF00920 Dehydratase family K04M3_32150 PF00585 C-terminal regulatory domain of Threonine dehydratase K04M3_32150 PF00291 Pyridoxal-phosphate dependent enzyme K04M3_32160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_32160 PF03466 LysR substrate binding domain K04M3_32170 PF07690 Major Facilitator Superfamily K04M3_32180 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_32190 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_32200 PF00132 Bacterial transferase hexapeptide (six repeats) K04M3_32200 PF12804 MobA-like NTP transferase domain K04M3_32220 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain K04M3_32220 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain K04M3_32230 PF02874 ATP synthase alpha/beta family, beta-barrel domain K04M3_32230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M3_32240 PF00231 ATP synthase K04M3_32250 PF02874 ATP synthase alpha/beta family, beta-barrel domain K04M3_32250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M3_32250 PF00306 ATP synthase alpha/beta chain, C terminal domain K04M3_32260 PF00213 ATP synthase delta (OSCP) subunit K04M3_32270 PF00430 ATP synthase B/B' CF(0) K04M3_32280 PF00137 ATP synthase subunit C K04M3_32290 PF00119 ATP synthase A chain K04M3_32300 PF03899 ATP synthase I chain K04M3_32310 PF17762 HTH domain found in ParB protein K04M3_32310 PF02195 ParB-like nuclease domain K04M3_32320 PF13614 AAA domain K04M3_32330 PF02527 rRNA small subunit methyltransferase G K04M3_32340 PF01134 Glucose inhibited division protein A K04M3_32340 PF13932 GidA associated domain K04M3_32350 PF00258 Flavodoxin K04M3_32360 PF10396 GTP-binding protein TrmE N-terminus K04M3_32360 PF12631 MnmE helical domain K04M3_32360 PF01926 50S ribosome-binding GTPase K04M3_32370 PF14849 YidC periplasmic domain K04M3_32370 PF02096 60Kd inner membrane protein K04M3_32380 PF00825 Ribonuclease P K04M3_32390 PF00468 Ribosomal protein L34 K04M3_32400 PF00005 ABC transporter K04M3_32410 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_32420 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_32430 PF18607 ParA helix turn helix domain K04M3_32430 PF13614 AAA domain K04M3_32440 PF02195 ParB-like nuclease domain K04M3_32440 PF08775 ParB family K04M3_32450 PF05127 Helicase K04M3_32450 PF13718 GNAT acetyltransferase 2 K04M3_32470 PF00132 Bacterial transferase hexapeptide (six repeats) K04M3_32480 PF03466 LysR substrate binding domain K04M3_32480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_32490 PF03575 Peptidase family S51 K04M3_32500 PF00267 Gram-negative porin K04M3_32510 PF00367 phosphotransferase system, EIIB K04M3_32510 PF02378 Phosphotransferase system, EIIC K04M3_32520 PF01380 SIS domain K04M3_32530 PF01418 Helix-turn-helix domain, rpiR family K04M3_32530 PF01380 SIS domain K04M3_32540 PF00246 Zinc carboxypeptidase K04M3_32550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_32560 PF03358 NADPH-dependent FMN reductase K04M3_32590 PF00664 ABC transporter transmembrane region K04M3_32590 PF00005 ABC transporter K04M3_32590 PF03412 Peptidase C39 family K04M3_32620 PF00529 HlyD membrane-fusion protein of T1SS K04M3_32630 PF00158 Sigma-54 interaction domain K04M3_32630 PF00072 Response regulator receiver domain K04M3_32630 PF02954 Bacterial regulatory protein, Fis family K04M3_32640 PF00512 His Kinase A (phospho-acceptor) domain K04M3_32640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_32640 PF02743 Cache domain K04M3_32650 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region K04M3_32650 PF01243 Pyridoxamine 5'-phosphate oxidase K04M3_32670 PF12833 Helix-turn-helix domain K04M3_32680 PF18327 Proline utilization A proline dehydrogenase N-terminal domain K04M3_32680 PF14850 DNA-binding domain of Proline dehydrogenase K04M3_32680 PF01619 Proline dehydrogenase K04M3_32680 PF00171 Aldehyde dehydrogenase family K04M3_32700 PF00474 Sodium:solute symporter family K04M3_32760 PF01037 Lrp/AsnC ligand binding domain K04M3_32780 PF00664 ABC transporter transmembrane region K04M3_32780 PF00005 ABC transporter K04M3_32800 PF00271 Helicase conserved C-terminal domain K04M3_32800 PF00270 DEAD/DEAH box helicase K04M3_32810 PF03475 3-alpha domain K04M3_32810 PF03473 MOSC domain K04M3_32850 PF08281 Sigma-70, region 4 K04M3_32850 PF04542 Sigma-70 region 2 K04M3_32860 PF12833 Helix-turn-helix domain K04M3_32860 PF01965 DJ-1/PfpI family K04M3_32870 PF03466 LysR substrate binding domain K04M3_32870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_32900 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_32900 PF13192 Thioredoxin domain K04M3_32910 PF00578 AhpC/TSA family K04M3_32910 PF10417 C-terminal domain of 1-Cys peroxiredoxin K04M3_32990 PF01047 MarR family K04M3_33000 PF02566 OsmC-like protein K04M3_33020 PF12833 Helix-turn-helix domain K04M3_33080 PF00005 ABC transporter K04M3_33120 PF02378 Phosphotransferase system, EIIC K04M3_33120 PF00367 phosphotransferase system, EIIB K04M3_33130 PF00486 Transcriptional regulatory protein, C terminal K04M3_33130 PF00072 Response regulator receiver domain K04M3_33140 PF00512 His Kinase A (phospho-acceptor) domain K04M3_33140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_33140 PF08521 Two-component sensor kinase N-terminal K04M3_33150 PF01547 Bacterial extracellular solute-binding protein K04M3_33160 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K04M3_33160 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K04M3_33170 PF04183 IucA / IucC family K04M3_33170 PF06276 Ferric iron reductase FhuF-like transporter K04M3_33190 PF06276 Ferric iron reductase FhuF-like transporter K04M3_33190 PF04183 IucA / IucC family K04M3_33200 PF00206 Lyase K04M3_33200 PF02655 ATP-grasp domain K04M3_33210 PF00593 TonB dependent receptor K04M3_33210 PF07715 TonB-dependent Receptor Plug Domain K04M3_33220 PF00593 TonB dependent receptor K04M3_33220 PF07715 TonB-dependent Receptor Plug Domain K04M3_33220 PF07660 Secretin and TonB N terminus short domain K04M3_33230 PF01497 Periplasmic binding protein K04M3_33240 PF01032 FecCD transport family K04M3_33250 PF01032 FecCD transport family K04M3_33260 PF01032 FecCD transport family K04M3_33270 PF00005 ABC transporter K04M3_33280 PF00672 HAMP domain K04M3_33280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_33280 PF17200 Single Cache domain 2 K04M3_33290 PF00675 Insulinase (Peptidase family M16) K04M3_33290 PF05193 Peptidase M16 inactive domain K04M3_33310 PF04225 Opacity-associated protein A LysM-like domain K04M3_33310 PF01551 Peptidase family M23 K04M3_33340 PF07690 Major Facilitator Superfamily K04M3_33350 PF00239 Resolvase, N terminal domain K04M3_33350 PF02796 Helix-turn-helix domain of resolvase K04M3_33360 PF00356 Bacterial regulatory proteins, lacI family K04M3_33370 PF00474 Sodium:solute symporter family K04M3_33400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K04M3_33420 PF03480 Bacterial extracellular solute-binding protein, family 7 K04M3_33430 PF00356 Bacterial regulatory proteins, lacI family K04M3_33440 PF03328 HpcH/HpaI aldolase/citrate lyase family K04M3_33480 PF00561 alpha/beta hydrolase fold K04M3_33510 PF07690 Major Facilitator Superfamily K04M3_33520 PF00474 Sodium:solute symporter family K04M3_33530 PF03313 Serine dehydratase alpha chain K04M3_33530 PF03315 Serine dehydratase beta chain K04M3_33540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K04M3_33540 PF00128 Alpha amylase, catalytic domain K04M3_33550 PF02264 LamB porin K04M3_33580 PF00128 Alpha amylase, catalytic domain K04M3_33580 PF16657 Maltogenic Amylase, C-terminal domain K04M3_33580 PF02903 Alpha amylase, N-terminal ig-like domain K04M3_33590 PF04231 Endonuclease I K04M3_33600 PF18494 Pullulanase Ins domain K04M3_33600 PF03714 Bacterial pullanase-associated domain K04M3_33600 PF11852 Domain of unknown function (DUF3372) K04M3_33600 PF17967 Pullulanase N2 domain K04M3_33600 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K04M3_33630 PF01276 Orn/Lys/Arg decarboxylase, major domain K04M3_33630 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain K04M3_33630 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain K04M3_33640 PF13520 Amino acid permease K04M3_33660 PF08543 Phosphomethylpyrimidine kinase K04M3_33670 PF00375 Sodium:dicarboxylate symporter family K04M3_33680 PF03193 RsgA GTPase K04M3_33690 PF00367 phosphotransferase system, EIIB K04M3_33690 PF02378 Phosphotransferase system, EIIC K04M3_33700 PF02630 SCO1/SenC K04M3_33730 PF17874 MalT-like TPR region K04M3_33730 PF00196 Bacterial regulatory proteins, luxR family K04M3_33740 PF00343 Carbohydrate phosphorylase K04M3_33750 PF02446 4-alpha-glucanotransferase K04M3_33760 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K04M3_33760 PF02806 Alpha amylase, C-terminal all-beta domain K04M3_33760 PF00128 Alpha amylase, catalytic domain K04M3_33770 PF00912 Transglycosylase K04M3_33780 PF00128 Alpha amylase, catalytic domain K04M3_33800 PF07670 Nucleoside recognition K04M3_33810 PF07670 Nucleoside recognition K04M3_33820 PF07687 Peptidase dimerisation domain K04M3_33820 PF01546 Peptidase family M20/M25/M40 K04M3_33830 PF06803 Protein of unknown function (DUF1232) K04M3_33840 PF00375 Sodium:dicarboxylate symporter family K04M3_33860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_33860 PF03466 LysR substrate binding domain K04M3_33870 PF08803 Putative mono-oxygenase ydhR K04M3_33890 PF13807 G-rich domain on putative tyrosine kinase K04M3_33890 PF13614 AAA domain K04M3_33890 PF02706 Chain length determinant protein K04M3_33900 PF01451 Low molecular weight phosphotyrosine protein phosphatase K04M3_33910 PF10531 SLBB domain K04M3_33910 PF02563 Polysaccharide biosynthesis/export protein K04M3_33910 PF18412 Outer-membrane lipoprotein Wza C-terminal domain K04M3_33930 PF00881 Nitroreductase family K04M3_33940 PF01914 MarC family integral membrane protein K04M3_33950 PF01734 Patatin-like phospholipase K04M3_33960 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading K04M3_33960 PF18416 N-acetylglucosamine binding protein domain 2 K04M3_33970 PF02469 Fasciclin domain K04M3_33980 PF03441 FAD binding domain of DNA photolyase K04M3_33980 PF00875 DNA photolyase K04M3_34010 PF00561 alpha/beta hydrolase fold K04M3_34020 PF07943 Penicillin-binding protein 5, C-terminal domain K04M3_34020 PF00768 D-alanyl-D-alanine carboxypeptidase K04M3_34030 PF00686 Starch binding domain K04M3_34030 PF00128 Alpha amylase, catalytic domain K04M3_34040 PF12833 Helix-turn-helix domain K04M3_34040 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term K04M3_34050 PF00881 Nitroreductase family K04M3_34070 PF03466 LysR substrate binding domain K04M3_34070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_34080 PF09905 DNA-binding protein VF530 K04M3_34110 PF00175 Oxidoreductase NAD-binding domain K04M3_34110 PF00970 Oxidoreductase FAD-binding domain K04M3_34130 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K04M3_34140 PF01594 AI-2E family transporter K04M3_34160 PF13533 Biotin-lipoyl like K04M3_34190 PF04632 Fusaric acid resistance protein family K04M3_34200 PF00892 EamA-like transporter family K04M3_34210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_34210 PF03466 LysR substrate binding domain K04M3_34220 PF07690 Major Facilitator Superfamily K04M3_34240 PF00583 Acetyltransferase (GNAT) family K04M3_34260 PF00486 Transcriptional regulatory protein, C terminal K04M3_34260 PF00072 Response regulator receiver domain K04M3_34270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_34270 PF00672 HAMP domain K04M3_34270 PF00512 His Kinase A (phospho-acceptor) domain K04M3_34300 PF00923 Transaldolase/Fructose-6-phosphate aldolase K04M3_34310 PF04055 Radical SAM superfamily K04M3_34360 PF08000 Bacterial PH domain K04M3_34390 PF00691 OmpA family K04M3_34390 PF13677 Membrane MotB of proton-channel complex MotA/MotB K04M3_34400 PF01618 MotA/TolQ/ExbB proton channel family K04M3_34410 PF04545 Sigma-70, region 4 K04M3_34410 PF04542 Sigma-70 region 2 K04M3_34420 PF03748 Flagellar basal body-associated protein FliL K04M3_34450 PF02561 Flagellar protein FliS K04M3_34460 PF07196 Flagellin hook IN motif K04M3_34460 PF07195 Flagellar hook-associated protein 2 C-terminus K04M3_34460 PF02465 Flagellar hook-associated protein 2 N-terminus K04M3_34480 PF00700 Bacterial flagellin C-terminal helical region K04M3_34480 PF00669 Bacterial flagellin N-terminal helical region K04M3_34500 PF00771 FHIPEP family K04M3_34510 PF01312 FlhB HrpN YscU SpaS Family K04M3_34520 PF01311 Bacterial export proteins, family 1 K04M3_34530 PF01313 Bacterial export proteins, family 3 K04M3_34540 PF00813 FliP family K04M3_34550 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K04M3_34580 PF02954 Bacterial regulatory protein, Fis family K04M3_34580 PF00072 Response regulator receiver domain K04M3_34580 PF00158 Sigma-54 interaction domain K04M3_34590 PF02049 Flagellar hook-basal body complex protein FliE K04M3_34600 PF08345 Flagellar M-ring protein C-terminal K04M3_34600 PF01514 Secretory protein of YscJ/FliF family K04M3_34610 PF01706 FliG C-terminal domain K04M3_34610 PF14841 FliG middle domain K04M3_34610 PF14842 FliG N-terminal domain K04M3_34630 PF18269 T3SS EscN ATPase C-terminal domain K04M3_34630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K04M3_34660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_34660 PF03466 LysR substrate binding domain K04M3_34720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M3_34730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_34730 PF03466 LysR substrate binding domain K04M3_34770 PF00486 Transcriptional regulatory protein, C terminal K04M3_34770 PF00072 Response regulator receiver domain K04M3_34780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_34780 PF00512 His Kinase A (phospho-acceptor) domain K04M3_34780 PF13426 PAS domain K04M3_34780 PF00072 Response regulator receiver domain K04M3_34780 PF08448 PAS fold K04M3_34790 PF00080 Copper/zinc superoxide dismutase (SODC) K04M3_34820 PF13188 PAS domain K04M3_34820 PF00990 Diguanylate cyclase, GGDEF domain K04M3_34820 PF00563 EAL domain K04M3_34820 PF03707 Bacterial signalling protein N terminal repeat K04M3_34830 PF00155 Aminotransferase class I and II K04M3_34840 PF00107 Zinc-binding dehydrogenase K04M3_34840 PF08240 Alcohol dehydrogenase GroES-like domain K04M3_34900 PF00194 Eukaryotic-type carbonic anhydrase K04M3_34910 PF00924 Mechanosensitive ion channel K04M3_34930 PF01070 FMN-dependent dehydrogenase K04M3_34940 PF02652 L-lactate permease K04M3_34950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_34950 PF03466 LysR substrate binding domain K04M3_34960 PF00326 Prolyl oligopeptidase family K04M3_34960 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K04M3_34970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_34970 PF00005 ABC transporter K04M3_34990 PF05362 Lon protease (S16) C-terminal proteolytic domain K04M3_34990 PF13654 AAA domain K04M3_35000 PF00672 HAMP domain K04M3_35000 PF12729 Four helix bundle sensory module for signal transduction K04M3_35000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_35010 PF13609 Gram-negative porin K04M3_35020 PF07238 PilZ domain K04M3_35020 PF12945 Flagellar protein YcgR K04M3_35050 PF00583 Acetyltransferase (GNAT) family K04M3_35060 PF12838 4Fe-4S dicluster domain K04M3_35060 PF12800 4Fe-4S binding domain K04M3_35070 PF13237 4Fe-4S dicluster domain K04M3_35070 PF12801 4Fe-4S binding domain K04M3_35110 PF12558 ATP-binding cassette cobalt transporter K04M3_35110 PF00005 ABC transporter K04M3_35120 PF07155 ECF-type riboflavin transporter, S component K04M3_35130 PF00529 HlyD membrane-fusion protein of T1SS K04M3_35130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_35140 PF11742 Protein of unknown function (DUF3302) K04M3_35150 PF00990 Diguanylate cyclase, GGDEF domain K04M3_35180 PF01048 Phosphorylase superfamily K04M3_35190 PF08349 Protein of unknown function (DUF1722) K04M3_35200 PF13411 MerR HTH family regulatory protein K04M3_35210 PF03441 FAD binding domain of DNA photolyase K04M3_35210 PF00875 DNA photolyase K04M3_35220 PF17969 L,D-transpeptidase C-terminal domain K04M3_35220 PF01476 LysM domain K04M3_35220 PF03734 L,D-transpeptidase catalytic domain K04M3_35240 PF00271 Helicase conserved C-terminal domain K04M3_35240 PF00270 DEAD/DEAH box helicase K04M3_35250 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K04M3_35250 PF00326 Prolyl oligopeptidase family K04M3_35260 PF00593 TonB dependent receptor K04M3_35260 PF07715 TonB-dependent Receptor Plug Domain K04M3_35300 PF00672 HAMP domain K04M3_35300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_35310 PF12849 PBP superfamily domain K04M3_35320 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_35330 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_35340 PF00005 ABC transporter K04M3_35370 PF13519 von Willebrand factor type A domain K04M3_35380 PF13519 von Willebrand factor type A domain K04M3_35400 PF01882 Protein of unknown function DUF58 K04M3_35410 PF17863 AAA lid domain K04M3_35410 PF07726 ATPase family associated with various cellular activities (AAA) K04M3_35420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_35420 PF00672 HAMP domain K04M3_35420 PF02743 Cache domain K04M3_35440 PF00196 Bacterial regulatory proteins, luxR family K04M3_35450 PF00196 Bacterial regulatory proteins, luxR family K04M3_35470 PF00664 ABC transporter transmembrane region K04M3_35470 PF00005 ABC transporter K04M3_35480 PF00529 HlyD membrane-fusion protein of T1SS K04M3_35500 PF01032 FecCD transport family K04M3_35510 PF01497 Periplasmic binding protein K04M3_35520 PF00005 ABC transporter K04M3_35530 PF07715 TonB-dependent Receptor Plug Domain K04M3_35530 PF00593 TonB dependent receptor K04M3_35540 PF00664 ABC transporter transmembrane region K04M3_35540 PF00005 ABC transporter K04M3_35550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_35550 PF00512 His Kinase A (phospho-acceptor) domain K04M3_35560 PF00072 Response regulator receiver domain K04M3_35560 PF00486 Transcriptional regulatory protein, C terminal K04M3_35570 PF02254 TrkA-N domain K04M3_35570 PF02080 TrkA-C domain K04M3_35580 PF02386 Cation transport protein K04M3_35590 PF03466 LysR substrate binding domain K04M3_35590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_35600 PF02028 BCCT, betaine/carnitine/choline family transporter K04M3_35610 PF00355 Rieske [2Fe-2S] domain K04M3_35610 PF00848 Ring hydroxylating alpha subunit (catalytic domain) K04M3_35630 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_35630 PF18113 Rubredoxin binding C-terminal domain K04M3_35640 PF01266 FAD dependent oxidoreductase K04M3_35660 PF00127 Copper binding proteins, plastocyanin/azurin family K04M3_35670 PF13419 Haloacid dehalogenase-like hydrolase K04M3_35690 PF01590 GAF domain K04M3_35690 PF00158 Sigma-54 interaction domain K04M3_35700 PF00258 Flavodoxin K04M3_35700 PF00301 Rubredoxin K04M3_35700 PF00753 Metallo-beta-lactamase superfamily K04M3_35710 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_35710 PF18113 Rubredoxin binding C-terminal domain K04M3_35730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M3_35730 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K04M3_35740 PF06628 Catalase-related immune-responsive K04M3_35740 PF00199 Catalase K04M3_35750 PF13417 Glutathione S-transferase, N-terminal domain K04M3_35760 PF16884 N-terminal domain of oxidoreductase K04M3_35760 PF00107 Zinc-binding dehydrogenase K04M3_35770 PF16925 Tetracyclin repressor-like, C-terminal domain K04M3_35770 PF00440 Bacterial regulatory proteins, tetR family K04M3_35840 PF00534 Glycosyl transferases group 1 K04M3_35840 PF13439 Glycosyltransferase Family 4 K04M3_35860 PF13614 AAA domain K04M3_35860 PF02706 Chain length determinant protein K04M3_35860 PF13807 G-rich domain on putative tyrosine kinase K04M3_35890 PF02397 Bacterial sugar transferase K04M3_35900 PF08402 TOBE domain K04M3_35900 PF00005 ABC transporter K04M3_35910 PF01547 Bacterial extracellular solute-binding protein K04M3_35920 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_35920 PF14785 Maltose transport system permease protein MalF P2 domain K04M3_35930 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_35990 PF05661 Protein of unknown function (DUF808) K04M3_36000 PF01979 Amidohydrolase family K04M3_36010 PF01679 Proteolipid membrane potential modulator K04M3_36020 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M3_36020 PF03473 MOSC domain K04M3_36020 PF03476 MOSC N-terminal beta barrel domain K04M3_36020 PF00111 2Fe-2S iron-sulfur cluster binding domain K04M3_36020 PF03473 MOSC domain K04M3_36020 PF03476 MOSC N-terminal beta barrel domain K04M3_36030 PF02540 NAD synthase K04M3_36040 PF01467 Cytidylyltransferase-like K04M3_36120 PF00005 ABC transporter K04M3_36130 PF01032 FecCD transport family K04M3_36150 PF02472 Biopolymer transport protein ExbD/TolR K04M3_36160 PF01618 MotA/TolQ/ExbB proton channel family K04M3_36170 PF03544 Gram-negative bacterial TonB protein C-terminal K04M3_36180 PF04055 Radical SAM superfamily K04M3_36190 PF06228 Haem utilisation ChuX/HutX K04M3_36200 PF01243 Pyridoxamine 5'-phosphate oxidase K04M3_36220 PF00072 Response regulator receiver domain K04M3_36220 PF01584 CheW-like domain K04M3_36240 PF01554 MatE K04M3_36250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_36250 PF00005 ABC transporter K04M3_36260 PF00005 ABC transporter K04M3_36260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_36270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_36280 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_36290 PF00455 DeoR C terminal sensor domain K04M3_36290 PF08220 DeoR-like helix-turn-helix domain K04M3_36300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K04M3_36300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M3_36310 PF17042 Nucleotide-binding C-terminal domain K04M3_36310 PF07005 Sugar-binding N-terminal domain K04M3_36320 PF00596 Class II Aldolase and Adducin N-terminal domain K04M3_36330 PF01261 Xylose isomerase-like TIM barrel K04M3_36340 PF01370 NAD dependent epimerase/dehydratase family K04M3_36350 PF02447 GntP family permease K04M3_36360 PF02583 Metal-sensitive transcriptional repressor K04M3_36370 PF03824 High-affinity nickel-transport protein K04M3_36380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_36380 PF00672 HAMP domain K04M3_36380 PF02743 Cache domain K04M3_36390 PF03466 LysR substrate binding domain K04M3_36390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_36400 PF17848 Acetyl-coA carboxylase zinc finger domain K04M3_36400 PF01039 Carboxyl transferase domain K04M3_36420 PF04151 Bacterial pre-peptidase C-terminal domain K04M3_36420 PF01752 Collagenase K04M3_36420 PF08453 Peptidase family M9 N-terminal K04M3_36440 PF02627 Carboxymuconolactone decarboxylase family K04M3_36450 PF13411 MerR HTH family regulatory protein K04M3_36460 PF00128 Alpha amylase, catalytic domain K04M3_36490 PF00999 Sodium/hydrogen exchanger family K04M3_36490 PF02254 TrkA-N domain K04M3_36500 PF02525 Flavodoxin-like fold K04M3_36510 PF00582 Universal stress protein family K04M3_36520 PF00005 ABC transporter K04M3_36520 PF12848 ABC transporter K04M3_36520 PF16326 ABC transporter C-terminal domain K04M3_36530 PF00326 Prolyl oligopeptidase family K04M3_36530 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K04M3_36550 PF13533 Biotin-lipoyl like K04M3_36560 PF00873 AcrB/AcrD/AcrF family K04M3_36570 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M3_36590 PF13302 Acetyltransferase (GNAT) domain K04M3_36610 PF17151 Periplasmic sensor domain K04M3_36610 PF00990 Diguanylate cyclase, GGDEF domain K04M3_36640 PF00873 AcrB/AcrD/AcrF family K04M3_36650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_36680 PF01568 Molydopterin dinucleotide binding domain K04M3_36680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M3_36680 PF00384 Molybdopterin oxidoreductase K04M3_36680 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K04M3_36680 PF12838 4Fe-4S dicluster domain K04M3_36710 PF00005 ABC transporter K04M3_36730 PF01418 Helix-turn-helix domain, rpiR family K04M3_36730 PF01380 SIS domain K04M3_36730 PF02685 Glucokinase K04M3_36750 PF07969 Amidohydrolase family K04M3_36770 PF00474 Sodium:solute symporter family K04M3_36780 PF00294 pfkB family carbohydrate kinase K04M3_36790 PF01081 KDPG and KHG aldolase K04M3_36800 PF02838 Glycosyl hydrolase family 20, domain 2 K04M3_36800 PF00728 Glycosyl hydrolase family 20, catalytic domain K04M3_36810 PF10282 Lactonase, 7-bladed beta-propeller K04M3_36820 PF01042 Endoribonuclease L-PSP K04M3_36830 PF02567 Phenazine biosynthesis-like protein K04M3_36840 PF01161 Phosphatidylethanolamine-binding protein K04M3_36860 PF01758 Sodium Bile acid symporter family K04M3_36890 PF01638 HxlR-like helix-turn-helix K04M3_36940 PF03466 LysR substrate binding domain K04M3_36940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_36950 PF00248 Aldo/keto reductase family K04M3_36960 PF03928 Haem-degrading K04M3_37000 PF03222 Tryptophan/tyrosine permease family K04M3_37020 PF00672 HAMP domain K04M3_37020 PF02743 Cache domain K04M3_37020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_37070 PF01551 Peptidase family M23 K04M3_37070 PF08525 Opacity-associated protein A N-terminal motif K04M3_37070 PF01476 LysM domain K04M3_37080 PF08447 PAS fold K04M3_37080 PF00990 Diguanylate cyclase, GGDEF domain K04M3_37080 PF00563 EAL domain K04M3_37080 PF08448 PAS fold K04M3_37090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_37090 PF03466 LysR substrate binding domain K04M3_37100 PF07690 Major Facilitator Superfamily K04M3_37130 PF00462 Glutaredoxin K04M3_37140 PF00892 EamA-like transporter family K04M3_37150 PF00267 Gram-negative porin K04M3_37170 PF01557 Fumarylacetoacetate (FAA) hydrolase family K04M3_37210 PF01810 LysE type translocator K04M3_37230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K04M3_37230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K04M3_37230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K04M3_37230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K04M3_37240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K04M3_37240 PF02790 Cytochrome C oxidase subunit II, transmembrane domain K04M3_37250 PF00115 Cytochrome C and Quinol oxidase polypeptide I K04M3_37260 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 K04M3_37270 PF00510 Cytochrome c oxidase subunit III K04M3_37300 PF02628 Cytochrome oxidase assembly protein K04M3_37310 PF01040 UbiA prenyltransferase family K04M3_37320 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K04M3_37320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K04M3_37340 PF00691 OmpA family K04M3_37340 PF05736 OprF membrane domain K04M3_37380 PF00313 'Cold-shock' DNA-binding domain K04M3_37390 PF03889 Alternative ribosome-rescue factor A K04M3_37400 PF00990 Diguanylate cyclase, GGDEF domain K04M3_37410 PF04545 Sigma-70, region 4 K04M3_37410 PF04542 Sigma-70 region 2 K04M3_37410 PF04539 Sigma-70 region 3 K04M3_37410 PF00140 Sigma-70 factor, region 1.2 K04M3_37430 PF00664 ABC transporter transmembrane region K04M3_37430 PF00005 ABC transporter K04M3_37440 PF00664 ABC transporter transmembrane region K04M3_37440 PF00005 ABC transporter K04M3_37450 PF02321 Outer membrane efflux protein K04M3_37460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_37460 PF00072 Response regulator receiver domain K04M3_37470 PF13533 Biotin-lipoyl like K04M3_37510 PF17200 Single Cache domain 2 K04M3_37510 PF00672 HAMP domain K04M3_37510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_37530 PF00210 Ferritin-like domain K04M3_37550 PF07995 Glucose / Sorbosone dehydrogenase K04M3_37560 PF00465 Iron-containing alcohol dehydrogenase K04M3_37590 PF00892 EamA-like transporter family K04M3_37610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_37610 PF03466 LysR substrate binding domain K04M3_37630 PF13193 AMP-binding enzyme C-terminal domain K04M3_37630 PF00501 AMP-binding enzyme K04M3_37640 PF00351 Biopterin-dependent aromatic amino acid hydroxylase K04M3_37650 PF01329 Pterin 4 alpha carbinolamine dehydratase K04M3_37690 PF12843 Putative quorum-sensing-regulated virulence factor K04M3_37730 PF00270 DEAD/DEAH box helicase K04M3_37730 PF00271 Helicase conserved C-terminal domain K04M3_37740 PF09905 DNA-binding protein VF530 K04M3_37760 PF00291 Pyridoxal-phosphate dependent enzyme K04M3_37770 PF00313 'Cold-shock' DNA-binding domain K04M3_37790 PF01470 Pyroglutamyl peptidase K04M3_37810 PF07683 Cobalamin synthesis protein cobW C-terminal domain K04M3_37810 PF02492 CobW/HypB/UreG, nucleotide-binding domain K04M3_37820 PF00271 Helicase conserved C-terminal domain K04M3_37820 PF00270 DEAD/DEAH box helicase K04M3_37860 PF12792 CSS motif domain associated with EAL K04M3_37860 PF00563 EAL domain K04M3_37870 PF00005 ABC transporter K04M3_37880 PF00672 HAMP domain K04M3_37880 PF12729 Four helix bundle sensory module for signal transduction K04M3_37880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_37910 PF12849 PBP superfamily domain K04M3_37930 PF12833 Helix-turn-helix domain K04M3_37940 PF08206 Ribonuclease B OB domain K04M3_37940 PF00773 RNB domain K04M3_37940 PF00575 S1 RNA binding domain K04M3_37950 PF00271 Helicase conserved C-terminal domain K04M3_37950 PF00270 DEAD/DEAH box helicase K04M3_37950 PF03880 DbpA RNA binding domain K04M3_37960 PF00871 Acetokinase family K04M3_37970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_37970 PF03466 LysR substrate binding domain K04M3_37980 PF12146 Serine aminopeptidase, S33 K04M3_37990 PF12146 Serine aminopeptidase, S33 K04M3_38020 PF01925 Sulfite exporter TauE/SafE K04M3_38050 PF01979 Amidohydrolase family K04M3_38060 PF00132 Bacterial transferase hexapeptide (six repeats) K04M3_38070 PF07683 Cobalamin synthesis protein cobW C-terminal domain K04M3_38070 PF02492 CobW/HypB/UreG, nucleotide-binding domain K04M3_38080 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K04M3_38090 PF08525 Opacity-associated protein A N-terminal motif K04M3_38090 PF01551 Peptidase family M23 K04M3_38090 PF01476 LysM domain K04M3_38110 PF02492 CobW/HypB/UreG, nucleotide-binding domain K04M3_38110 PF07683 Cobalamin synthesis protein cobW C-terminal domain K04M3_38120 PF02492 CobW/HypB/UreG, nucleotide-binding domain K04M3_38120 PF07683 Cobalamin synthesis protein cobW C-terminal domain K04M3_38130 PF01258 Prokaryotic dksA/traR C4-type zinc finger K04M3_38140 PF01914 MarC family integral membrane protein K04M3_38160 PF13426 PAS domain K04M3_38160 PF08447 PAS fold K04M3_38160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_38180 PF00682 HMGL-like K04M3_38190 PF00378 Enoyl-CoA hydratase/isomerase K04M3_38200 PF01039 Carboxyl transferase domain K04M3_38210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M3_38210 PF02770 Acyl-CoA dehydrogenase, middle domain K04M3_38210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M3_38220 PF00376 MerR family regulatory protein K04M3_38220 PF09278 MerR, DNA binding K04M3_38230 PF02803 Thiolase, C-terminal domain K04M3_38230 PF00108 Thiolase, N-terminal domain K04M3_38240 PF00171 Aldehyde dehydrogenase family K04M3_38260 PF00378 Enoyl-CoA hydratase/isomerase K04M3_38270 PF00378 Enoyl-CoA hydratase/isomerase K04M3_38280 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M3_38280 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K04M3_38300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K04M3_38300 PF06481 COX Aromatic Rich Motif K04M3_38310 PF00115 Cytochrome C and Quinol oxidase polypeptide I K04M3_38320 PF00510 Cytochrome c oxidase subunit III K04M3_38340 PF01040 UbiA prenyltransferase family K04M3_38350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M3_38350 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_38380 PF00171 Aldehyde dehydrogenase family K04M3_38400 PF02028 BCCT, betaine/carnitine/choline family transporter K04M3_38460 PF00005 ABC transporter K04M3_38470 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_38480 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_38490 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_38510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_38510 PF03466 LysR substrate binding domain K04M3_38540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_38540 PF03466 LysR substrate binding domain K04M3_38560 PF00766 Electron transfer flavoprotein FAD-binding domain K04M3_38560 PF01012 Electron transfer flavoprotein domain K04M3_38570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K04M3_38570 PF02817 e3 binding domain K04M3_38570 PF00364 Biotin-requiring enzyme K04M3_38580 PF02780 Transketolase, C-terminal domain K04M3_38580 PF02779 Transketolase, pyrimidine binding domain K04M3_38590 PF00676 Dehydrogenase E1 component K04M3_38630 PF00012 Hsp70 protein K04M3_38640 PF04314 Copper chaperone PCu(A)C K04M3_38690 PF00072 Response regulator receiver domain K04M3_38690 PF00486 Transcriptional regulatory protein, C terminal K04M3_38730 PF01483 Proprotein convertase P-domain K04M3_38730 PF00082 Subtilase family K04M3_38750 PF00990 Diguanylate cyclase, GGDEF domain K04M3_38750 PF07694 5TMR of 5TMR-LYT K04M3_38770 PF03222 Tryptophan/tyrosine permease family K04M3_38790 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M3_38790 PF00384 Molybdopterin oxidoreductase K04M3_38790 PF01568 Molydopterin dinucleotide binding domain K04M3_38800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M3_38800 PF14824 Sirohaem biosynthesis protein central K04M3_38800 PF10414 Sirohaem synthase dimerisation region K04M3_38810 PF00591 Glycosyl transferase family, a/b domain K04M3_38810 PF02885 Glycosyl transferase family, helical bundle domain K04M3_38820 PF01738 Dienelactone hydrolase family K04M3_38830 PF03861 ANTAR domain K04M3_38830 PF08376 Nitrate and nitrite sensing K04M3_38840 PF00005 ABC transporter K04M3_38850 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_38860 PF00005 ABC transporter K04M3_38870 PF13806 Rieske-like [2Fe-2S] domain K04M3_38870 PF18267 Rubredoxin NAD+ reductase C-terminal domain K04M3_38870 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_38870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K04M3_38870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K04M3_38870 PF04324 BFD-like [2Fe-2S] binding domain K04M3_38930 PF00211 Adenylate and Guanylate cyclase catalytic domain K04M3_38930 PF00072 Response regulator receiver domain K04M3_38970 PF00069 Protein kinase domain K04M3_38970 PF03793 PASTA domain K04M3_39010 PF13677 Membrane MotB of proton-channel complex MotA/MotB K04M3_39010 PF00691 OmpA family K04M3_39130 PF17871 AAA lid domain K04M3_39130 PF10431 C-terminal, D2-small domain, of ClpB protein K04M3_39130 PF00004 ATPase family associated with various cellular activities (AAA) K04M3_39130 PF07724 AAA domain (Cdc48 subfamily) K04M3_39150 PF04717 Type VI secretion system, phage-baseplate injector K04M3_39150 PF16671 Actin cross-linking domain K04M3_39180 PF00149 Calcineurin-like phosphoesterase K04M3_39180 PF12320 Type 5 capsule protein repressor C-terminal domain K04M3_39190 PF13476 AAA domain K04M3_39210 PF08212 Lipocalin-like domain K04M3_39230 PF03606 C4-dicarboxylate anaerobic carrier K04M3_39250 PF01212 Beta-eliminating lyase K04M3_39270 PF12592 Protein of unknown function (DUF3763) K04M3_39270 PF17868 AAA lid domain K04M3_39270 PF07728 AAA domain (dynein-related subfamily) K04M3_39280 PF05762 VWA domain containing CoxE-like protein K04M3_39310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_39310 PF03466 LysR substrate binding domain K04M3_39320 PF09330 D-lactate dehydrogenase, membrane binding K04M3_39320 PF01565 FAD binding domain K04M3_39350 PF01168 Alanine racemase, N-terminal domain K04M3_39350 PF00842 Alanine racemase, C-terminal domain K04M3_39360 PF00672 HAMP domain K04M3_39360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_39420 PF07733 Bacterial DNA polymerase III alpha NTPase domain K04M3_39420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K04M3_39420 PF14579 Helix-hairpin-helix motif K04M3_39420 PF00929 Exonuclease K04M3_39420 PF02811 PHP domain K04M3_39510 PF02511 Thymidylate synthase complementing protein K04M3_39520 PF13597 Anaerobic ribonucleoside-triphosphate reductase K04M3_39520 PF03477 ATP cone domain K04M3_39910 PF00128 Alpha amylase, catalytic domain K04M3_39910 PF09154 Domain of unknown function (DUF1939) K04M3_39970 PF00296 Luciferase-like monooxygenase K04M3_39980 PF00990 Diguanylate cyclase, GGDEF domain K04M3_39980 PF03707 Bacterial signalling protein N terminal repeat K04M3_39980 PF00563 EAL domain K04M3_40000 PF00563 EAL domain K04M3_40000 PF00990 Diguanylate cyclase, GGDEF domain K04M3_40000 PF03707 Bacterial signalling protein N terminal repeat K04M3_40010 PF14760 Rnk N-terminus K04M3_40010 PF01272 Transcription elongation factor, GreA/GreB, C-term K04M3_40030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K04M3_40030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K04M3_40030 PF04324 BFD-like [2Fe-2S] binding domain K04M3_40030 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_40030 PF18267 Rubredoxin NAD+ reductase C-terminal domain K04M3_40040 PF13806 Rieske-like [2Fe-2S] domain K04M3_40050 PF01226 Formate/nitrite transporter K04M3_40060 PF14824 Sirohaem biosynthesis protein central K04M3_40060 PF10414 Sirohaem synthase dimerisation region K04M3_40060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K04M3_40090 PF03605 Anaerobic c4-dicarboxylate membrane transporter K04M3_40110 PF00593 TonB dependent receptor K04M3_40110 PF07715 TonB-dependent Receptor Plug Domain K04M3_40130 PF13302 Acetyltransferase (GNAT) domain K04M3_40140 PF11756 Nitrous oxide-stimulated promoter K04M3_40150 PF07690 Major Facilitator Superfamily K04M3_40160 PF00085 Thioredoxin K04M3_40170 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K04M3_40170 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K04M3_40210 PF01238 Phosphomannose isomerase type I K04M3_40220 PF07690 Major Facilitator Superfamily K04M3_40230 PF05231 MASE1 K04M3_40230 PF07730 Histidine kinase K04M3_40230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_40240 PF00072 Response regulator receiver domain K04M3_40240 PF00196 Bacterial regulatory proteins, luxR family K04M3_40250 PF07690 Major Facilitator Superfamily K04M3_40260 PF02634 FdhD/NarQ family K04M3_40270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_40270 PF03466 LysR substrate binding domain K04M3_40280 PF00384 Molybdopterin oxidoreductase K04M3_40310 PF02567 Phenazine biosynthesis-like protein K04M3_40320 PF01177 Asp/Glu/Hydantoin racemase K04M3_40330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K04M3_40330 PF07992 Pyridine nucleotide-disulphide oxidoreductase K04M3_40350 PF04143 Sulphur transport K04M3_40380 PF13597 Anaerobic ribonucleoside-triphosphate reductase K04M3_40380 PF03477 ATP cone domain K04M3_40400 PF01554 MatE K04M3_40410 PF12852 Cupin K04M3_40410 PF12833 Helix-turn-helix domain K04M3_40420 PF00155 Aminotransferase class I and II K04M3_40430 PF18030 RimK PreATP-grasp domain K04M3_40430 PF08443 RimK-like ATP-grasp domain K04M3_40450 PF04076 Bacterial OB fold (BOF) protein K04M3_40460 PF07685 CobB/CobQ-like glutamine amidotransferase domain K04M3_40460 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K04M3_40480 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_40490 PF03459 TOBE domain K04M3_40490 PF00005 ABC transporter K04M3_40510 PF01590 GAF domain K04M3_40510 PF00563 EAL domain K04M3_40510 PF00360 Phytochrome region K04M3_40510 PF00990 Diguanylate cyclase, GGDEF domain K04M3_40520 PF00072 Response regulator receiver domain K04M3_40520 PF00990 Diguanylate cyclase, GGDEF domain K04M3_40550 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K04M3_40550 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K04M3_40550 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch K04M3_40560 PF02233 NAD(P) transhydrogenase beta subunit K04M3_40580 PF00486 Transcriptional regulatory protein, C terminal K04M3_40580 PF00072 Response regulator receiver domain K04M3_40610 PF03701 Uncharacterised protein family (UPF0181) K04M3_40620 PF00582 Universal stress protein family K04M3_40640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_40640 PF03466 LysR substrate binding domain K04M3_40960 PF05707 Zonular occludens toxin (Zot) K04M3_41090 PF05707 Zonular occludens toxin (Zot) K04M3_41180 PF01253 Translation initiation factor SUI1 K04M3_41230 PF00583 Acetyltransferase (GNAT) family K04M3_41230 PF13607 Succinyl-CoA ligase like flavodoxin domain K04M3_41230 PF13380 CoA binding domain K04M3_41260 PF13607 Succinyl-CoA ligase like flavodoxin domain K04M3_41260 PF13380 CoA binding domain K04M3_41260 PF00583 Acetyltransferase (GNAT) family K04M3_41270 PF03466 LysR substrate binding domain K04M3_41270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_41300 PF07715 TonB-dependent Receptor Plug Domain K04M3_41300 PF00593 TonB dependent receptor K04M3_41470 PF05707 Zonular occludens toxin (Zot) K04M3_41570 PF01253 Translation initiation factor SUI1 K04M3_41590 PF01820 D-ala D-ala ligase N-terminus K04M3_41590 PF07478 D-ala D-ala ligase C-terminus K04M3_41600 PF05036 Sporulation related domain K04M3_41610 PF13380 CoA binding domain K04M3_41610 PF13607 Succinyl-CoA ligase like flavodoxin domain K04M3_41610 PF00583 Acetyltransferase (GNAT) family K04M3_41620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_41620 PF03466 LysR substrate binding domain K04M3_41630 PF00593 TonB dependent receptor K04M3_41630 PF07715 TonB-dependent Receptor Plug Domain K04M3_41630 PF04886 PT repeat K04M3_41640 PF16363 GDP-mannose 4,6 dehydratase K04M3_41650 PF00990 Diguanylate cyclase, GGDEF domain K04M3_41650 PF05231 MASE1 K04M3_41650 PF08447 PAS fold K04M3_41650 PF08448 PAS fold K04M3_41650 PF13426 PAS domain K04M3_41650 PF00563 EAL domain K04M3_41660 PF03746 LamB/YcsF family K04M3_41670 PF02682 Carboxyltransferase domain, subdomain C and D K04M3_41680 PF02626 Carboxyltransferase domain, subdomain A and B K04M3_41710 PF00005 ABC transporter K04M3_41720 PF13472 GDSL-like Lipase/Acylhydrolase family K04M3_41730 PF12241 Trans-2-enoyl-CoA reductase catalytic region K04M3_41730 PF07055 Enoyl reductase FAD binding domain K04M3_41730 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase K04M3_41740 PF13188 PAS domain K04M3_41740 PF03707 Bacterial signalling protein N terminal repeat K04M3_41740 PF00990 Diguanylate cyclase, GGDEF domain K04M3_41740 PF00563 EAL domain K04M3_41760 PF00684 DnaJ central domain K04M3_41760 PF01556 DnaJ C terminal domain K04M3_41760 PF00226 DnaJ domain K04M3_41810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K04M3_41810 PF12793 Sugar transport-related sRNA regulator N-term K04M3_41830 PF03061 Thioesterase superfamily K04M3_41860 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M3_41870 PF12262 Bacterial virulence factor lipase N-terminal K04M3_41910 PF03741 Integral membrane protein TerC family K04M3_41920 PF02872 5'-nucleotidase, C-terminal domain K04M3_41920 PF00149 Calcineurin-like phosphoesterase K04M3_41930 PF11398 Protein of unknown function (DUF2813) K04M3_41940 PF06496 Protein of unknown function (DUF1097) K04M3_41950 PF03466 LysR substrate binding domain K04M3_41950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_41970 PF01226 Formate/nitrite transporter K04M3_41980 PF04264 YceI-like domain K04M3_41990 PF01292 Prokaryotic cytochrome b561 K04M3_42030 PF00270 DEAD/DEAH box helicase K04M3_42030 PF00271 Helicase conserved C-terminal domain K04M3_42040 PF04336 Acyl carrier protein phosphodiesterase K04M3_42060 PF00672 HAMP domain K04M3_42060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_42060 PF12729 Four helix bundle sensory module for signal transduction K04M3_42070 PF13419 Haloacid dehalogenase-like hydrolase K04M3_42100 PF00294 pfkB family carbohydrate kinase K04M3_42110 PF01268 Formate--tetrahydrofolate ligase K04M3_42120 PF00483 Nucleotidyl transferase K04M3_42130 PF06483 Chitinase C K04M3_42130 PF00704 Glycosyl hydrolases family 18 K04M3_42140 PF12833 Helix-turn-helix domain K04M3_42140 PF06719 AraC-type transcriptional regulator N-terminus K04M3_42150 PF00465 Iron-containing alcohol dehydrogenase K04M3_42170 PF00005 ABC transporter K04M3_42180 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_42190 PF00497 Bacterial extracellular solute-binding proteins, family 3 K04M3_42200 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_42210 PF00563 EAL domain K04M3_42210 PF01590 GAF domain K04M3_42210 PF00990 Diguanylate cyclase, GGDEF domain K04M3_42210 PF00989 PAS fold K04M3_42240 PF00356 Bacterial regulatory proteins, lacI family K04M3_42240 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K04M3_42250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K04M3_42250 PF00381 PTS HPr component phosphorylation site K04M3_42260 PF00294 pfkB family carbohydrate kinase K04M3_42270 PF02378 Phosphotransferase system, EIIC K04M3_42270 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K04M3_42290 PF00873 AcrB/AcrD/AcrF family K04M3_42330 PF01571 Aminomethyltransferase folate-binding domain K04M3_42330 PF08669 Glycine cleavage T-protein C-terminal barrel domain K04M3_42350 PF00464 Serine hydroxymethyltransferase K04M3_42360 PF01597 Glycine cleavage H-protein K04M3_42370 PF02347 Glycine cleavage system P-protein K04M3_42380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M3_42390 PF00753 Metallo-beta-lactamase superfamily K04M3_42390 PF16123 Hydroxyacylglutathione hydrolase C-terminus K04M3_42400 PF03466 LysR substrate binding domain K04M3_42400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_42410 PF00892 EamA-like transporter family K04M3_42420 PF02627 Carboxymuconolactone decarboxylase family K04M3_42430 PF12833 Helix-turn-helix domain K04M3_42480 PF02811 PHP domain K04M3_42480 PF14579 Helix-hairpin-helix motif K04M3_42480 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K04M3_42480 PF07733 Bacterial DNA polymerase III alpha NTPase domain K04M3_42480 PF00929 Exonuclease K04M3_42480 PF11490 DNA polymerase III polC-type N-terminus II K04M3_42490 PF00005 ABC transporter K04M3_42490 PF00664 ABC transporter transmembrane region K04M3_42530 PF02253 Phospholipase A1 K04M3_42550 PF09278 MerR, DNA binding K04M3_42550 PF00376 MerR family regulatory protein K04M3_42560 PF01327 Polypeptide deformylase K04M3_42620 PF00571 CBS domain K04M3_42620 PF01769 Divalent cation transporter K04M3_42620 PF03448 MgtE intracellular N domain K04M3_42660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M3_42670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M3_42690 PF01757 Acyltransferase family K04M3_42720 PF00141 Peroxidase K04M3_42730 PF13187 4Fe-4S dicluster domain K04M3_42730 PF01645 Conserved region in glutamate synthase K04M3_42750 PF00171 Aldehyde dehydrogenase family K04M3_42780 PF00892 EamA-like transporter family K04M3_42790 PF00893 Small Multidrug Resistance protein K04M3_42830 PF00892 EamA-like transporter family K04M3_42850 PF08334 Type II secretion system (T2SS), protein G K04M3_42850 PF07963 Prokaryotic N-terminal methylation motif K04M3_42860 PF01584 CheW-like domain K04M3_42860 PF00072 Response regulator receiver domain K04M3_42870 PF00196 Bacterial regulatory proteins, luxR family K04M3_42870 PF00072 Response regulator receiver domain K04M3_42890 PF00990 Diguanylate cyclase, GGDEF domain K04M3_42900 PF00072 Response regulator receiver domain K04M3_42900 PF00196 Bacterial regulatory proteins, luxR family K04M3_42910 PF03707 Bacterial signalling protein N terminal repeat K04M3_42910 PF13188 PAS domain K04M3_42910 PF00990 Diguanylate cyclase, GGDEF domain K04M3_42910 PF00563 EAL domain K04M3_42920 PF09456 RcsC Alpha-Beta-Loop (ABL) K04M3_42920 PF00072 Response regulator receiver domain K04M3_42920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_42920 PF00512 His Kinase A (phospho-acceptor) domain K04M3_42930 PF01926 50S ribosome-binding GTPase K04M3_42940 PF00155 Aminotransferase class I and II K04M3_42950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_42950 PF00072 Response regulator receiver domain K04M3_42970 PF00814 Glycoprotease family K04M3_42970 PF00583 Acetyltransferase (GNAT) family K04M3_42990 PF03606 C4-dicarboxylate anaerobic carrier K04M3_43020 PF18081 Fanconi anemia-associated nuclease SAP domain K04M3_43020 PF08774 VRR-NUC domain K04M3_43040 PF04076 Bacterial OB fold (BOF) protein K04M3_43050 PF00781 Diacylglycerol kinase catalytic domain K04M3_43060 PF03466 LysR substrate binding domain K04M3_43060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_43070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K04M3_43100 PF00092 von Willebrand factor type A domain K04M3_43130 PF07726 ATPase family associated with various cellular activities (AAA) K04M3_43130 PF17863 AAA lid domain K04M3_43140 PF04055 Radical SAM superfamily K04M3_43140 PF13186 Iron-sulfur cluster-binding domain K04M3_43150 PF00884 Sulfatase K04M3_43150 PF16385 Domain of unknown function K04M3_43160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_43160 PF03466 LysR substrate binding domain K04M3_43170 PF00884 Sulfatase K04M3_43180 PF00486 Transcriptional regulatory protein, C terminal K04M3_43180 PF00072 Response regulator receiver domain K04M3_43210 PF00672 HAMP domain K04M3_43210 PF00072 Response regulator receiver domain K04M3_43210 PF00512 His Kinase A (phospho-acceptor) domain K04M3_43210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_43210 PF01627 Hpt domain K04M3_43220 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K04M3_43230 PF02142 MGS-like domain K04M3_43240 PF13361 UvrD-like helicase C-terminal domain K04M3_43240 PF12462 DNA helicase IV / RNA helicase N terminal K04M3_43240 PF00580 UvrD/REP helicase N-terminal domain K04M3_43250 PF12805 FUSC-like inner membrane protein yccS K04M3_43310 PF07715 TonB-dependent Receptor Plug Domain K04M3_43310 PF00593 TonB dependent receptor K04M3_43330 PF13411 MerR HTH family regulatory protein K04M3_43340 PF00005 ABC transporter K04M3_43350 PF01032 FecCD transport family K04M3_43360 PF01032 FecCD transport family K04M3_43370 PF01497 Periplasmic binding protein K04M3_43390 PF01048 Phosphorylase superfamily K04M3_43400 PF04973 Nicotinamide mononucleotide transporter K04M3_43420 PF00356 Bacterial regulatory proteins, lacI family K04M3_43430 PF00294 pfkB family carbohydrate kinase K04M3_43440 PF13407 Periplasmic binding protein domain K04M3_43450 PF02653 Branched-chain amino acid transport system / permease component K04M3_43460 PF00005 ABC transporter K04M3_43470 PF05025 RbsD / FucU transport protein family K04M3_43480 PF00563 EAL domain K04M3_43480 PF00990 Diguanylate cyclase, GGDEF domain K04M3_43560 PF04116 Fatty acid hydroxylase superfamily K04M3_43580 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K04M3_43580 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K04M3_43600 PF09308 LuxQ, periplasmic K04M3_43600 PF00072 Response regulator receiver domain K04M3_43600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_43600 PF00512 His Kinase A (phospho-acceptor) domain K04M3_43610 PF00034 Cytochrome c K04M3_43610 PF03150 Di-haem cytochrome c peroxidase K04M3_43630 PF01145 SPFH domain / Band 7 family K04M3_43630 PF16200 C-terminal region of band_7 K04M3_43650 PF00881 Nitroreductase family K04M3_43660 PF00571 CBS domain K04M3_43660 PF00005 ABC transporter K04M3_43670 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_43680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K04M3_43690 PF00732 GMC oxidoreductase K04M3_43690 PF05199 GMC oxidoreductase K04M3_43700 PF00171 Aldehyde dehydrogenase family K04M3_43710 PF00440 Bacterial regulatory proteins, tetR family K04M3_43710 PF13977 BetI-type transcriptional repressor, C-terminal K04M3_43720 PF00990 Diguanylate cyclase, GGDEF domain K04M3_43720 PF00072 Response regulator receiver domain K04M3_43740 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K04M3_43740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K04M3_43760 PF00378 Enoyl-CoA hydratase/isomerase K04M3_43770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M3_43770 PF02770 Acyl-CoA dehydrogenase, middle domain K04M3_43770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M3_43780 PF00171 Aldehyde dehydrogenase family K04M3_43790 PF02803 Thiolase, C-terminal domain K04M3_43790 PF00108 Thiolase, N-terminal domain K04M3_43800 PF00376 MerR family regulatory protein K04M3_43800 PF09278 MerR, DNA binding K04M3_43810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K04M3_43810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K04M3_43810 PF02770 Acyl-CoA dehydrogenase, middle domain K04M3_43820 PF01039 Carboxyl transferase domain K04M3_43830 PF00378 Enoyl-CoA hydratase/isomerase K04M3_43840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K04M3_43840 PF00364 Biotin-requiring enzyme K04M3_43840 PF00289 Biotin carboxylase, N-terminal domain K04M3_43840 PF02785 Biotin carboxylase C-terminal domain K04M3_43850 PF00682 HMGL-like K04M3_43870 PF12794 Mechanosensitive ion channel inner membrane domain 1 K04M3_43870 PF12795 Mechanosensitive ion channel porin domain K04M3_43870 PF00924 Mechanosensitive ion channel K04M3_43880 PF14602 Hexapeptide repeat of succinyl-transferase K04M3_43880 PF12464 Maltose acetyltransferase K04M3_43890 PF00392 Bacterial regulatory proteins, gntR family K04M3_43890 PF00155 Aminotransferase class I and II K04M3_43900 PF01654 Cytochrome bd terminal oxidase subunit I K04M3_43910 PF02322 Cytochrome bd terminal oxidase subunit II K04M3_43930 PF02567 Phenazine biosynthesis-like protein K04M3_43950 PF13195 Protein of unknown function (DUF4011) K04M3_43950 PF13087 AAA domain K04M3_43950 PF13086 AAA domain K04M3_43950 PF13195 Protein of unknown function (DUF4011) K04M3_43950 PF13087 AAA domain K04M3_43950 PF13086 AAA domain K04M3_43960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_43960 PF03466 LysR substrate binding domain K04M3_43970 PF03306 Alpha-acetolactate decarboxylase K04M3_43980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K04M3_43980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K04M3_43980 PF00205 Thiamine pyrophosphate enzyme, central domain K04M3_44000 PF05724 Thiopurine S-methyltransferase (TPMT) K04M3_44010 PF00501 AMP-binding enzyme K04M3_44010 PF14535 AMP-binding enzyme C-terminal domain K04M3_44020 PF00005 ABC transporter K04M3_44060 PF00501 AMP-binding enzyme K04M3_44070 PF00005 ABC transporter K04M3_44070 PF12399 Branched-chain amino acid ATP-binding cassette transporter K04M3_44090 PF01012 Electron transfer flavoprotein domain K04M3_44100 PF00766 Electron transfer flavoprotein FAD-binding domain K04M3_44100 PF01012 Electron transfer flavoprotein domain K04M3_44110 PF13193 AMP-binding enzyme C-terminal domain K04M3_44110 PF00501 AMP-binding enzyme K04M3_44120 PF02378 Phosphotransferase system, EIIC K04M3_44120 PF00367 phosphotransferase system, EIIB K04M3_44130 PF11975 Family 4 glycosyl hydrolase C-terminal domain K04M3_44130 PF02056 Family 4 glycosyl hydrolase K04M3_44140 PF00392 Bacterial regulatory proteins, gntR family K04M3_44140 PF07702 UTRA domain K04M3_44150 PF03334 Na+/H+ antiporter subunit K04M3_44160 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) K04M3_44190 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K04M3_44200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K04M3_44200 PF00361 Proton-conducting membrane transporter K04M3_44200 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter K04M3_44200 PF13244 Domain of unknown function (DUF4040) K04M3_44220 PF00582 Universal stress protein family K04M3_44230 PF00106 short chain dehydrogenase K04M3_44240 PF03466 LysR substrate binding domain K04M3_44240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_44260 PF07690 Major Facilitator Superfamily K04M3_44390 PF01037 Lrp/AsnC ligand binding domain K04M3_44460 PF00069 Protein kinase domain K04M3_44510 PF04717 Type VI secretion system, phage-baseplate injector K04M3_44520 PF05638 Type VI secretion system effector, Hcp K04M3_44530 PF10431 C-terminal, D2-small domain, of ClpB protein K04M3_44530 PF17871 AAA lid domain K04M3_44530 PF07724 AAA domain (Cdc48 subfamily) K04M3_44530 PF00004 ATPase family associated with various cellular activities (AAA) K04M3_44540 PF00158 Sigma-54 interaction domain K04M3_44540 PF02954 Bacterial regulatory protein, Fis family K04M3_44590 PF01551 Peptidase family M23 K04M3_44590 PF08525 Opacity-associated protein A N-terminal motif K04M3_44590 PF01476 LysM domain K04M3_44600 PF00132 Bacterial transferase hexapeptide (six repeats) K04M3_44610 PF00144 Beta-lactamase K04M3_44620 PF00392 Bacterial regulatory proteins, gntR family K04M3_44650 PF00551 Formyl transferase K04M3_44650 PF02911 Formyl transferase, C-terminal domain K04M3_44650 PF01370 NAD dependent epimerase/dehydratase family K04M3_44700 PF08031 Berberine and berberine like K04M3_44700 PF01565 FAD binding domain K04M3_44720 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family K04M3_44730 PF00478 IMP dehydrogenase / GMP reductase domain K04M3_44740 PF01256 Carbohydrate kinase K04M3_44740 PF03853 YjeF-related protein N-terminus K04M3_44760 PF00072 Response regulator receiver domain K04M3_44770 PF00248 Aldo/keto reductase family K04M3_44800 PF00654 Voltage gated chloride channel K04M3_44820 PF01227 GTP cyclohydrolase I K04M3_44830 PF00994 Probable molybdopterin binding domain K04M3_44830 PF03454 MoeA C-terminal region (domain IV) K04M3_44830 PF03453 MoeA N-terminal region (domain I and II) K04M3_44840 PF00899 ThiF family K04M3_44870 PF00581 Rhodanese-like domain K04M3_44890 PF00923 Transaldolase/Fructose-6-phosphate aldolase K04M3_44900 PF02779 Transketolase, pyrimidine binding domain K04M3_44900 PF02780 Transketolase, C-terminal domain K04M3_44900 PF00456 Transketolase, thiamine diphosphate binding domain K04M3_44910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_44910 PF08447 PAS fold K04M3_44920 PF07690 Major Facilitator Superfamily K04M3_44930 PF00793 DAHP synthetase I family K04M3_44940 PF01389 OmpA-like transmembrane domain K04M3_44940 PF00691 OmpA family K04M3_44950 PF13419 Haloacid dehalogenase-like hydrolase K04M3_44960 PF00472 RF-1 domain K04M3_44970 PF00672 HAMP domain K04M3_44970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_44970 PF12729 Four helix bundle sensory module for signal transduction K04M3_44980 PF00873 AcrB/AcrD/AcrF family K04M3_44990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_45000 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K04M3_45010 PF07687 Peptidase dimerisation domain K04M3_45010 PF01546 Peptidase family M20/M25/M40 K04M3_45040 PF00072 Response regulator receiver domain K04M3_45040 PF00196 Bacterial regulatory proteins, luxR family K04M3_45050 PF00672 HAMP domain K04M3_45050 PF07730 Histidine kinase K04M3_45050 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term K04M3_45050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_45060 PF13187 4Fe-4S dicluster domain K04M3_45060 PF12838 4Fe-4S dicluster domain K04M3_45080 PF00384 Molybdopterin oxidoreductase K04M3_45080 PF01568 Molydopterin dinucleotide binding domain K04M3_45080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K04M3_45090 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) K04M3_45100 PF03264 NapC/NirT cytochrome c family, N-terminal region K04M3_45120 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K04M3_45140 PF02803 Thiolase, C-terminal domain K04M3_45140 PF00108 Thiolase, N-terminal domain K04M3_45150 PF00106 short chain dehydrogenase K04M3_45160 PF01810 LysE type translocator K04M3_45180 PF07549 SecD/SecF GG Motif K04M3_45180 PF02355 Protein export membrane protein K04M3_45190 PF02355 Protein export membrane protein K04M3_45190 PF13721 SecD export protein N-terminal TM region K04M3_45190 PF07549 SecD/SecF GG Motif K04M3_45240 PF01037 Lrp/AsnC ligand binding domain K04M3_45280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_45280 PF00529 HlyD membrane-fusion protein of T1SS K04M3_45290 PF01047 MarR family K04M3_45300 PF00072 Response regulator receiver domain K04M3_45300 PF09308 LuxQ, periplasmic K04M3_45300 PF00512 His Kinase A (phospho-acceptor) domain K04M3_45300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_45310 PF13407 Periplasmic binding protein domain K04M3_45320 PF01541 GIY-YIG catalytic domain K04M3_45330 PF04337 Protein of unknown function, DUF480 K04M3_45350 PF04363 Protein of unknown function (DUF496) K04M3_45360 PF01554 MatE K04M3_45370 PF00072 Response regulator receiver domain K04M3_45370 PF00672 HAMP domain K04M3_45370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_45370 PF00512 His Kinase A (phospho-acceptor) domain K04M3_45370 PF01627 Hpt domain K04M3_45370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K04M3_45380 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M3_45380 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K04M3_45430 PF03466 LysR substrate binding domain K04M3_45430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_45450 PF13520 Amino acid permease K04M3_45460 PF00155 Aminotransferase class I and II K04M3_45460 PF00392 Bacterial regulatory proteins, gntR family K04M3_45480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_45480 PF00672 HAMP domain K04M3_45480 PF16527 Two-component sensor protein CpxA, periplasmic domain K04M3_45480 PF00512 His Kinase A (phospho-acceptor) domain K04M3_45490 PF00486 Transcriptional regulatory protein, C terminal K04M3_45490 PF00072 Response regulator receiver domain K04M3_45520 PF12833 Helix-turn-helix domain K04M3_45520 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term K04M3_45540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_45540 PF00529 HlyD membrane-fusion protein of T1SS K04M3_45550 PF03109 ABC1 family K04M3_45560 PF03448 MgtE intracellular N domain K04M3_45560 PF01769 Divalent cation transporter K04M3_45560 PF00571 CBS domain K04M3_45570 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin K04M3_45580 PF07969 Amidohydrolase family K04M3_45590 PF01966 HD domain K04M3_45610 PF07690 Major Facilitator Superfamily K04M3_45630 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K04M3_45640 PF00255 Glutathione peroxidase K04M3_45670 PF01323 DSBA-like thioredoxin domain K04M3_45700 PF00072 Response regulator receiver domain K04M3_45700 PF00486 Transcriptional regulatory protein, C terminal K04M3_45710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_45710 PF00672 HAMP domain K04M3_45710 PF16527 Two-component sensor protein CpxA, periplasmic domain K04M3_45710 PF00512 His Kinase A (phospho-acceptor) domain K04M3_45730 PF01219 Prokaryotic diacylglycerol kinase K04M3_45740 PF00884 Sulfatase K04M3_45740 PF08019 Phosphoethanolamine transferase EptA/EptB K04M3_45750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K04M3_45780 PF01734 Patatin-like phospholipase K04M3_45790 PF05726 Pirin C-terminal cupin domain K04M3_45790 PF02678 Pirin K04M3_45800 PF00313 'Cold-shock' DNA-binding domain K04M3_45830 PF00962 Adenosine/AMP deaminase K04M3_45840 PF00462 Glutaredoxin K04M3_45840 PF08534 Redoxin K04M3_45860 PF00768 D-alanyl-D-alanine carboxypeptidase K04M3_45860 PF07943 Penicillin-binding protein 5, C-terminal domain K04M3_45880 PF02798 Glutathione S-transferase, N-terminal domain K04M3_45890 PF08244 Glycosyl hydrolases family 32 C terminal K04M3_45890 PF00251 Glycosyl hydrolases family 32 N-terminal domain K04M3_45900 PF00294 pfkB family carbohydrate kinase K04M3_45910 PF00367 phosphotransferase system, EIIB K04M3_45910 PF02378 Phosphotransferase system, EIIC K04M3_45920 PF00356 Bacterial regulatory proteins, lacI family K04M3_45930 PF11471 Maltoporin periplasmic N-terminal extension K04M3_45930 PF02264 LamB porin K04M3_46010 PF00106 short chain dehydrogenase K04M3_46020 PF03466 LysR substrate binding domain K04M3_46020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_46030 PF12833 Helix-turn-helix domain K04M3_46030 PF01497 Periplasmic binding protein K04M3_46040 PF00155 Aminotransferase class I and II K04M3_46080 PF00271 Helicase conserved C-terminal domain K04M3_46080 PF00270 DEAD/DEAH box helicase K04M3_46100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_46100 PF03466 LysR substrate binding domain K04M3_46110 PF03466 LysR substrate binding domain K04M3_46110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_46130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K04M3_46140 PF08240 Alcohol dehydrogenase GroES-like domain K04M3_46140 PF00107 Zinc-binding dehydrogenase K04M3_46180 PF00392 Bacterial regulatory proteins, gntR family K04M3_46180 PF00155 Aminotransferase class I and II K04M3_46190 PF00557 Metallopeptidase family M24 K04M3_46190 PF01321 Creatinase/Prolidase N-terminal domain K04M3_46200 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K04M3_46210 PF01037 Lrp/AsnC ligand binding domain K04M3_46220 PF00171 Aldehyde dehydrogenase family K04M3_46230 PF00202 Aminotransferase class-III K04M3_46240 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) K04M3_46270 PF03466 LysR substrate binding domain K04M3_46270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_46290 PF17763 Glutaminase/Asparaginase C-terminal domain K04M3_46290 PF00710 Asparaginase, N-terminal K04M3_46300 PF03618 Kinase/pyrophosphorylase K04M3_46310 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K04M3_46310 PF02896 PEP-utilising enzyme, TIM barrel domain K04M3_46310 PF00391 PEP-utilising enzyme, mobile domain K04M3_46330 PF00196 Bacterial regulatory proteins, luxR family K04M3_46330 PF00072 Response regulator receiver domain K04M3_46340 PF00579 tRNA synthetases class I (W and Y) K04M3_46350 PF13416 Bacterial extracellular solute-binding protein K04M3_46380 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 K04M3_46380 PF00703 Glycosyl hydrolases family 2 K04M3_46380 PF02836 Glycosyl hydrolases family 2, TIM barrel domain K04M3_46380 PF02837 Glycosyl hydrolases family 2, sugar binding domain K04M3_46390 PF02028 BCCT, betaine/carnitine/choline family transporter K04M3_46400 PF07702 UTRA domain K04M3_46400 PF00392 Bacterial regulatory proteins, gntR family K04M3_46450 PF08402 TOBE domain K04M3_46450 PF00005 ABC transporter K04M3_46490 PF00873 AcrB/AcrD/AcrF family K04M3_46530 PF00873 AcrB/AcrD/AcrF family K04M3_46550 PF13091 PLD-like domain K04M3_46560 PF00398 Ribosomal RNA adenine dimethylase K04M3_46600 PF09278 MerR, DNA binding K04M3_46600 PF00376 MerR family regulatory protein K04M3_46620 PF03466 LysR substrate binding domain K04M3_46620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_46640 PF13378 Enolase C-terminal domain-like K04M3_46640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K04M3_46650 PF14492 Elongation Factor G, domain II K04M3_46650 PF03764 Elongation factor G, domain IV K04M3_46650 PF00009 Elongation factor Tu GTP binding domain K04M3_46650 PF03144 Elongation factor Tu domain 2 K04M3_46650 PF00679 Elongation factor G C-terminus K04M3_46700 PF02001 Protein of unknown function DUF134 K04M3_46710 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_46720 PF00005 ABC transporter K04M3_46720 PF00571 CBS domain K04M3_46730 PF17185 NlpE C-terminal OB domain K04M3_46730 PF04170 NlpE N-terminal domain K04M3_46740 PF06629 MltA-interacting protein MipA K04M3_46770 PF03466 LysR substrate binding domain K04M3_46770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_46820 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain K04M3_46820 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family K04M3_46840 PF00857 Isochorismatase family K04M3_46870 PF00455 DeoR C terminal sensor domain K04M3_46870 PF08220 DeoR-like helix-turn-helix domain K04M3_46880 PF01641 SelR domain K04M3_46880 PF01625 Peptide methionine sulfoxide reductase K04M3_46890 PF03060 Nitronate monooxygenase K04M3_46900 PF13520 Amino acid permease K04M3_46910 PF05985 Ethanolamine ammonia-lyase light chain (EutC) K04M3_46920 PF06751 Ethanolamine ammonia lyase large subunit (EutB) K04M3_46930 PF12833 Helix-turn-helix domain K04M3_46940 PF08359 YsiA-like protein, C-terminal region K04M3_46940 PF00440 Bacterial regulatory proteins, tetR family K04M3_46970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_46970 PF03466 LysR substrate binding domain K04M3_46980 PF01810 LysE type translocator K04M3_47000 PF00118 TCP-1/cpn60 chaperonin family K04M3_47010 PF00166 Chaperonin 10 Kd subunit K04M3_47020 PF00581 Rhodanese-like domain K04M3_47050 PF01070 FMN-dependent dehydrogenase K04M3_47090 PF00669 Bacterial flagellin N-terminal helical region K04M3_47100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_47100 PF00460 Flagella basal body rod protein K04M3_47110 PF10135 Rod binding protein K04M3_47110 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K04M3_47120 PF02119 Flagellar P-ring protein K04M3_47130 PF02107 Flagellar L-ring protein K04M3_47140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_47140 PF00460 Flagella basal body rod protein K04M3_47150 PF00460 Flagella basal body rod protein K04M3_47150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_47160 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_47160 PF00460 Flagella basal body rod protein K04M3_47160 PF07559 Flagellar basal body protein FlaE K04M3_47170 PF03963 Flagellar hook capping protein - N-terminal region K04M3_47170 PF13860 FlgD Ig-like domain K04M3_47170 PF13861 FlgD Tudor-like domain K04M3_47180 PF00460 Flagella basal body rod protein K04M3_47180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K04M3_47190 PF00460 Flagella basal body rod protein K04M3_47230 PF01464 Transglycosylase SLT domain K04M3_47240 PF00133 tRNA synthetases class I (I, L, M and V) K04M3_47240 PF08264 Anticodon-binding domain of tRNA K04M3_47280 PF03315 Serine dehydratase beta chain K04M3_47280 PF03313 Serine dehydratase alpha chain K04M3_47300 PF03466 LysR substrate binding domain K04M3_47300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_47310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_47310 PF03466 LysR substrate binding domain K04M3_47320 PF01389 OmpA-like transmembrane domain K04M3_47320 PF00691 OmpA family K04M3_47330 PF00246 Zinc carboxypeptidase K04M3_47330 PF18027 Cytosolic carboxypeptidase N-terminal domain K04M3_47340 PF01266 FAD dependent oxidoreductase K04M3_47360 PF04393 Protein of unknown function (DUF535) K04M3_47390 PF07702 UTRA domain K04M3_47390 PF00392 Bacterial regulatory proteins, gntR family K04M3_47400 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_47410 PF00005 ABC transporter K04M3_47440 PF00266 Aminotransferase class-V K04M3_47460 PF13419 Haloacid dehalogenase-like hydrolase K04M3_47470 PF00356 Bacterial regulatory proteins, lacI family K04M3_47480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K04M3_47500 PF03611 PTS system sugar-specific permease component K04M3_47530 PF00657 GDSL-like Lipase/Acylhydrolase K04M3_47540 PF00440 Bacterial regulatory proteins, tetR family K04M3_47560 PF02321 Outer membrane efflux protein K04M3_47570 PF12704 MacB-like periplasmic core domain K04M3_47570 PF02687 FtsX-like permease family K04M3_47570 PF00005 ABC transporter K04M3_47580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K04M3_47590 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K04M3_47600 PF00194 Eukaryotic-type carbonic anhydrase K04M3_47610 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) K04M3_47640 PF13419 Haloacid dehalogenase-like hydrolase K04M3_47650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_47650 PF03466 LysR substrate binding domain K04M3_47710 PF12464 Maltose acetyltransferase K04M3_47710 PF14602 Hexapeptide repeat of succinyl-transferase K04M3_47720 PF02566 OsmC-like protein K04M3_47730 PF01641 SelR domain K04M3_47730 PF01625 Peptide methionine sulfoxide reductase K04M3_47750 PF04244 Deoxyribodipyrimidine photo-lyase-related protein K04M3_47760 PF03441 FAD binding domain of DNA photolyase K04M3_47760 PF00875 DNA photolyase K04M3_47770 PF00990 Diguanylate cyclase, GGDEF domain K04M3_47800 PF00990 Diguanylate cyclase, GGDEF domain K04M3_47800 PF05230 MASE2 domain K04M3_47830 PF01773 Na+ dependent nucleoside transporter N-terminus K04M3_47830 PF07670 Nucleoside recognition K04M3_47830 PF07662 Na+ dependent nucleoside transporter C-terminus K04M3_47860 PF01212 Beta-eliminating lyase K04M3_47880 PF03116 NQR2, RnfD, RnfE family K04M3_47890 PF01654 Cytochrome bd terminal oxidase subunit I K04M3_47900 PF02322 Cytochrome bd terminal oxidase subunit II K04M3_47930 PF00182 Chitinase class I K04M3_47940 PF01266 FAD dependent oxidoreductase K04M3_47980 PF05525 Branched-chain amino acid transport protein K04M3_47990 PF00990 Diguanylate cyclase, GGDEF domain K04M3_48000 PF02954 Bacterial regulatory protein, Fis family K04M3_48000 PF00158 Sigma-54 interaction domain K04M3_48000 PF00072 Response regulator receiver domain K04M3_48010 PF13426 PAS domain K04M3_48010 PF08448 PAS fold K04M3_48010 PF00512 His Kinase A (phospho-acceptor) domain K04M3_48010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_48010 PF00072 Response regulator receiver domain K04M3_48020 PF00232 Glycosyl hydrolase family 1 K04M3_48050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_48050 PF03466 LysR substrate binding domain K04M3_48070 PF12706 Beta-lactamase superfamily domain K04M3_48090 PF08443 RimK-like ATP-grasp domain K04M3_48090 PF18030 RimK PreATP-grasp domain K04M3_48100 PF18030 RimK PreATP-grasp domain K04M3_48100 PF08443 RimK-like ATP-grasp domain K04M3_48110 PF00753 Metallo-beta-lactamase superfamily K04M3_48120 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K04M3_48120 PF17944 Arginine decarboxylase C-terminal helical extension K04M3_48120 PF17810 Arginine decarboxylase helical bundle domain K04M3_48130 PF00491 Arginase family K04M3_48140 PF07690 Major Facilitator Superfamily K04M3_48150 PF00326 Prolyl oligopeptidase family K04M3_48150 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K04M3_48180 PF00950 ABC 3 transport family K04M3_48190 PF00005 ABC transporter K04M3_48200 PF01297 Zinc-uptake complex component A periplasmic K04M3_48280 PF02472 Biopolymer transport protein ExbD/TolR K04M3_48290 PF01618 MotA/TolQ/ExbB proton channel family K04M3_48300 PF01618 MotA/TolQ/ExbB proton channel family K04M3_48320 PF00593 TonB dependent receptor K04M3_48320 PF07715 TonB-dependent Receptor Plug Domain K04M3_48330 PF00672 HAMP domain K04M3_48330 PF00512 His Kinase A (phospho-acceptor) domain K04M3_48330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_48330 PF16750 Sensor domain of 2-component histidine kinase K04M3_48340 PF00486 Transcriptional regulatory protein, C terminal K04M3_48340 PF00072 Response regulator receiver domain K04M3_48350 PF03009 Glycerophosphoryl diester phosphodiesterase family K04M3_48370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K04M3_48370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K04M3_48380 PF10928 Protein of unknown function (DUF2810) K04M3_48490 PF04013 Putative SAM-dependent RNA methyltransferase K04M3_48500 PF01523 Putative modulator of DNA gyrase K04M3_48510 PF01523 Putative modulator of DNA gyrase K04M3_48520 PF08543 Phosphomethylpyrimidine kinase K04M3_48530 PF00005 ABC transporter K04M3_48540 PF00528 Binding-protein-dependent transport system inner membrane component K04M3_48550 PF09084 NMT1/THI5 like K04M3_48560 PF03070 TENA/THI-4/PQQC family K04M3_48570 PF02110 Hydroxyethylthiazole kinase family K04M3_48580 PF02581 Thiamine monophosphate synthase K04M3_48600 PF00384 Molybdopterin oxidoreductase K04M3_48600 PF18364 Molybdopterin oxidoreductase N-terminal domain K04M3_48600 PF01568 Molydopterin dinucleotide binding domain K04M3_48610 PF03264 NapC/NirT cytochrome c family, N-terminal region K04M3_48620 PF13302 Acetyltransferase (GNAT) domain K04M3_48660 PF00583 Acetyltransferase (GNAT) family K04M3_48700 PF00392 Bacterial regulatory proteins, gntR family K04M3_48700 PF00155 Aminotransferase class I and II K04M3_48710 PF02595 Glycerate kinase family K04M3_48720 PF02447 GntP family permease K04M3_48730 PF05651 Putative sugar diacid recognition K04M3_48730 PF17853 GGDEF-like domain K04M3_48730 PF13556 PucR C-terminal helix-turn-helix domain K04M3_48800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K04M3_48810 PF12706 Beta-lactamase superfamily domain K04M3_48840 PF07690 Major Facilitator Superfamily K04M3_48850 PF13533 Biotin-lipoyl like K04M3_48860 PF03922 OmpW family K04M3_48880 PF13599 Pentapeptide repeats (9 copies) K04M3_48920 PF01037 Lrp/AsnC ligand binding domain K04M3_48930 PF01810 LysE type translocator K04M3_48940 PF08021 Siderophore-interacting FAD-binding domain K04M3_48940 PF04954 Siderophore-interacting protein K04M3_48950 PF03466 LysR substrate binding domain K04M3_48950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_48960 PF00797 N-acetyltransferase K04M3_48970 PF00107 Zinc-binding dehydrogenase K04M3_48970 PF08240 Alcohol dehydrogenase GroES-like domain K04M3_48980 PF00756 Putative esterase K04M3_49020 PF17152 Periplasmic sensor domain K04M3_49020 PF00990 Diguanylate cyclase, GGDEF domain K04M3_49050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_49050 PF03466 LysR substrate binding domain K04M3_49080 PF00849 RNA pseudouridylate synthase K04M3_49090 PF01554 MatE K04M3_49100 PF00990 Diguanylate cyclase, GGDEF domain K04M3_49100 PF00563 EAL domain K04M3_49120 PF06865 Pyrimidine/purine nucleoside phosphorylase K04M3_49140 PF00704 Glycosyl hydrolases family 18 K04M3_49140 PF08329 Chitinase A, N-terminal domain K04M3_49150 PF12697 Alpha/beta hydrolase family K04M3_49190 PF03600 Citrate transporter K04M3_49210 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 K04M3_49230 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K04M3_49230 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K04M3_49240 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K04M3_49240 PF12833 Helix-turn-helix domain K04M3_49240 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K04M3_49240 PF02805 Metal binding domain of Ada K04M3_49260 PF07681 DoxX K04M3_49270 PF17954 Quercetinase C-terminal cupin domain K04M3_49270 PF02678 Pirin K04M3_49280 PF03466 LysR substrate binding domain K04M3_49280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K04M3_49310 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K04M3_49330 PF03616 Sodium/glutamate symporter K04M3_49340 PF00392 Bacterial regulatory proteins, gntR family K04M3_49340 PF00155 Aminotransferase class I and II K04M3_49350 PF00005 ABC transporter K04M3_49370 PF03616 Sodium/glutamate symporter K04M3_49400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K04M3_49400 PF00672 HAMP domain K04M3_49400 PF17200 Single Cache domain 2 K04M3_49410 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K04M3_49430 PF04397 LytTr DNA-binding domain K04M3_49430 PF00072 Response regulator receiver domain K04M3_49440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_49440 PF06580 Histidine kinase K04M3_49440 PF07694 5TMR of 5TMR-LYT K04M3_49440 PF13492 GAF domain K04M3_49480 PF00005 ABC transporter K04M3_49500 PF01098 Cell cycle protein K04M3_49510 PF01709 Transcriptional regulator K04M3_49530 PF00672 HAMP domain K04M3_49530 PF01627 Hpt domain K04M3_49530 PF00512 His Kinase A (phospho-acceptor) domain K04M3_49530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K04M3_49530 PF17149 Periplasmic sensor domain found in signal transduction proteins K04M3_49530 PF00072 Response regulator receiver domain K04M3_49550 PF08719 Domain of unknown function (DUF1768) K04M3_49550 PF00925 GTP cyclohydrolase II K04M3_49570 PF00005 ABC transporter K04M3_49570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_49580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K04M3_49580 PF00005 ABC transporter K04M3_50160 PF05016 ParE toxin of type II toxin-antitoxin system, parDE K04M3_50530 PF08275 DNA primase catalytic core, N-terminal domain K04M3_50530 PF13662 Toprim domain K04M3_50530 PF01807 CHC2 zinc finger K04M3_51040 PF01751 Toprim domain K04M3_51040 PF01396 Topoisomerase DNA binding C4 zinc finger K04M3_51040 PF08272 Topoisomerase I zinc-ribbon-like K04M3_51040 PF01131 DNA topoisomerase K04M3_51150 PF00437 Type II/IV secretion system protein K04M3_51250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K04M3_51250 PF00437 Type II/IV secretion system protein K04M3_51270 PF00114 Pilin (bacterial filament) K04M3_51270 PF07963 Prokaryotic N-terminal methylation motif K04M3_51540 PF00816 H-NS histone family K04M3_51620 PF00563 EAL domain K04M3_51620 PF00990 Diguanylate cyclase, GGDEF domain K04M3_51620 PF03707 Bacterial signalling protein N terminal repeat K04M3_52090 PF01145 SPFH domain / Band 7 family K04M3_52100 PF01145 SPFH domain / Band 7 family K04M3_52130 PF00817 impB/mucB/samB family K04M3_52130 PF11799 impB/mucB/samB family C-terminal domain K04M3_52130 PF13438 Domain of unknown function (DUF4113) K04M3_52170 PF07669 Eco57I restriction-modification methylase K04M3_52210 PF00563 EAL domain K04M3_52210 PF01590 GAF domain K04M3_52210 PF00990 Diguanylate cyclase, GGDEF domain K04M3_52210 PF00360 Phytochrome region K04M3_52430 PF01807 CHC2 zinc finger K04M3_52430 PF13662 Toprim domain K04M3_52430 PF08275 DNA primase catalytic core, N-terminal domain K04M3_52670 PF13361 UvrD-like helicase C-terminal domain K04M3_52670 PF00580 UvrD/REP helicase N-terminal domain