K04M3_00010 SM00382 ATPases associated with a variety of cellular activities K04M3_00010 SM00760 Bacterial dnaA protein helix-turn-helix domain K04M3_00020 SM00480 DNA polymerase III beta subunit K04M3_00040 SM00387 Histidine kinase-like ATPases K04M3_00040 SM00433 TopoisomeraseII K04M3_00090 SM00642 Alpha-amylase domain K04M3_00170 SM00829 Enoylreductase K04M3_00430 SM00382 ATPases associated with a variety of cellular activities K04M3_00480 SM00354 helix_turn _helix lactose operon repressor K04M3_00610 SM00344 helix_turn_helix ASNC type K04M3_00620 SM00052 Putative diguanylate phosphodiesterase K04M3_00620 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K04M3_00620 SM00091 PAS domain K04M3_00620 SM00267 diguanylate cyclase K04M3_00700 SM00382 ATPases associated with a variety of cellular activities K04M3_00710 SM00749 bacterial OsmY and nodulation domain K04M3_00750 SM00046 Diacylglycerol kinase catalytic domain (presumed) K04M3_00750 SM00195 Dual specificity phosphatase, catalytic domain K04M3_00750 SM00404 Protein tyrosine phosphatase, catalytic domain motif K04M3_00820 SM00052 Putative diguanylate phosphodiesterase K04M3_00820 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K04M3_00820 SM00091 PAS domain K04M3_00820 SM00267 diguanylate cyclase K04M3_00920 SM01004 Delta-aminolevulinic acid dehydratase K04M3_00950 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs K04M3_00950 SM00474 3'-5' exonuclease K04M3_00950 SM00475 5'-3' exonuclease K04M3_00950 SM00482 DNA polymerase A domain K04M3_01010 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_01030 SM00052 Putative diguanylate phosphodiesterase K04M3_01030 SM00267 diguanylate cyclase K04M3_01030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_01040 SM00382 ATPases associated with a variety of cellular activities K04M3_01040 SM00448 cheY-homologous receiver domain K04M3_01050 SM00091 PAS domain K04M3_01050 SM00387 Histidine kinase-like ATPases K04M3_01050 SM00388 His Kinase A (phosphoacceptor) domain K04M3_01070 SM01230 K04M3_01070 K04M3_01170 SM00363 S4 RNA-binding domain K04M3_01200 SM00382 ATPases associated with a variety of cellular activities K04M3_01360 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_01360 SM00732 Likely ribonuclease with RNase H fold. K04M3_01400 SM00448 cheY-homologous receiver domain K04M3_01400 SM00862 Transcriptional regulatory protein, C terminal K04M3_01410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_01410 SM00387 Histidine kinase-like ATPases K04M3_01410 SM00388 His Kinase A (phosphoacceptor) domain K04M3_01430 SM00487 DEAD-like helicases superfamily K04M3_01430 SM00490 helicase superfamily c-terminal domain K04M3_01450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K04M3_01450 SM00954 Region found in RelA / SpoT proteins K04M3_01460 SM01409 K04M3_01460 K04M3_01470 SM00072 Guanylate kinase homologues. K04M3_01480 SM00028 Tetratricopeptide repeats K04M3_01580 SM00382 ATPases associated with a variety of cellular activities K04M3_01590 SM00382 ATPases associated with a variety of cellular activities K04M3_01670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_01670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_01670 SM01049 K04M3_01670 K04M3_01720 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain K04M3_01720 SM01232 K04M3_01720 K04M3_01740 SM00672 Putative lipopolysaccharide-modifying enzyme. K04M3_02050 SM01002 Alanine dehydrogenase/PNT, C-terminal domain K04M3_02050 SM01003 Alanine dehydrogenase/PNT, N-terminal domain K04M3_02120 SM00849 Metallo-beta-lactamase superfamily K04M3_02120 SM01027 Beta-Casp domain K04M3_02210 SM00984 UDP binding domain K04M3_02410 SM00448 cheY-homologous receiver domain K04M3_02420 SM00091 PAS domain K04M3_02420 SM00387 Histidine kinase-like ATPases K04M3_02470 SM00764 Citrate lyase ligase C-terminal domain K04M3_02550 SM00382 ATPases associated with a variety of cellular activities K04M3_02550 SM01086 C-terminal, D2-small domain, of ClpB protein K04M3_02590 SM00354 helix_turn _helix lactose operon repressor K04M3_02600 SM00487 DEAD-like helicases superfamily K04M3_02600 SM00490 helicase superfamily c-terminal domain K04M3_02620 SM01403 K04M3_02620 K04M3_02660 SM01382 K04M3_02660 K04M3_02660 SM01383 K04M3_02660 K04M3_02690 SM00322 K homology RNA-binding domain K04M3_02730 SM01374 K04M3_02730 K04M3_02740 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. K04M3_02870 SM00363 S4 RNA-binding domain K04M3_02870 SM01390 K04M3_02870 K04M3_02880 SM00662 RNA polymerases D K04M3_02940 SM00487 DEAD-like helicases superfamily K04M3_02940 SM00490 helicase superfamily c-terminal domain K04M3_03060 SM00382 ATPases associated with a variety of cellular activities K04M3_03220 SM00382 ATPases associated with a variety of cellular activities K04M3_03400 SM00650 Ribosomal RNA adenine dimethylases K04M3_03440 SM00271 DnaJ molecular chaperone homology domain K04M3_03480 SM01329 K04M3_03480 K04M3_03490 SM00917 LeuA allosteric (dimerisation) domain K04M3_03510 SM00014 Acid phosphatase homologues K04M3_03570 SM00267 diguanylate cyclase K04M3_03580 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_03600 SM00420 helix_turn_helix, Deoxyribose operon repressor K04M3_03600 SM01134 K04M3_03600 K04M3_03640 SM01120 K04M3_03640 K04M3_03700 SM00563 Phosphate acyltransferases K04M3_03760 SM00400 zinc finger K04M3_03760 SM00493 K04M3_03760 K04M3_03760 SM00766 DNA primase DnaG DnaB-binding K04M3_03810 SM01207 K04M3_03810 K04M3_03820 SM00905 Dihydroneopterin aldolase K04M3_03860 SM00382 ATPases associated with a variety of cellular activities K04M3_03890 SM00287 Bacterial SH3 domain homologues K04M3_03920 SM00880 K04M3_03920 K04M3_03920 SM01118 K04M3_03920 K04M3_03940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_04020 SM00387 Histidine kinase-like ATPases K04M3_04020 SM00433 TopoisomeraseII K04M3_04030 SM00434 DNA Topoisomerase IV K04M3_04040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. K04M3_04050 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. K04M3_04170 SM00749 bacterial OsmY and nodulation domain K04M3_04330 SM00842 Cell division protein FtsA K04M3_04340 SM00864 Tubulin/FtsZ family, GTPase domain K04M3_04340 SM00865 Tubulin/FtsZ family, C-terminal domain K04M3_04370 SM00957 SecA DEAD-like domain K04M3_04370 SM00958 SecA preprotein cross-linking domain K04M3_04400 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain K04M3_04410 SM00851 MGS-like domain K04M3_04410 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K04M3_04550 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_04560 SM00091 PAS domain K04M3_04560 SM00267 diguanylate cyclase K04M3_04570 SM00073 Histidine Phosphotransfer domain K04M3_04570 SM00091 PAS domain K04M3_04570 SM00387 Histidine kinase-like ATPases K04M3_04570 SM00388 His Kinase A (phosphoacceptor) domain K04M3_04570 SM00448 cheY-homologous receiver domain K04M3_04590 SM00448 cheY-homologous receiver domain K04M3_04590 SM00862 Transcriptional regulatory protein, C terminal K04M3_04680 SM00518 AP endonuclease family 2 K04M3_04690 SM00986 Uracil DNA glycosylase superfamily K04M3_04690 SM00987 UreE urease accessory protein, C-terminal domain K04M3_04740 SM00487 DEAD-like helicases superfamily K04M3_04740 SM00490 helicase superfamily c-terminal domain K04M3_04810 SM00937 K04M3_04810 K04M3_04830 SM00382 ATPases associated with a variety of cellular activities K04M3_04880 SM00927 DNA mismatch repair enzyme MutH K04M3_04900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K04M3_04940 SM01154 K04M3_04940 K04M3_04970 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K04M3_05000 SM00904 Riboflavin kinase K04M3_05050 SM00226 Low molecular weight phosphatase family K04M3_05060 SM00448 cheY-homologous receiver domain K04M3_05060 SM00850 LytTr DNA-binding domain K04M3_05150 SM00830 Chorismate mutase type II K04M3_05180 SM00382 ATPases associated with a variety of cellular activities K04M3_05220 SM00830 Chorismate mutase type II K04M3_05240 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_05260 SM00363 S4 RNA-binding domain K04M3_05280 SM00382 ATPases associated with a variety of cellular activities K04M3_05280 SM01086 C-terminal, D2-small domain, of ClpB protein K04M3_05440 SM00448 cheY-homologous receiver domain K04M3_05440 SM00862 Transcriptional regulatory protein, C terminal K04M3_05450 SM00091 PAS domain K04M3_05450 SM00387 Histidine kinase-like ATPases K04M3_05450 SM00388 His Kinase A (phosphoacceptor) domain K04M3_05510 SM00382 ATPases associated with a variety of cellular activities K04M3_05590 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_05600 SM00020 Trypsin-like serine protease K04M3_05630 SM01323 K04M3_05630 K04M3_05740 SM00271 DnaJ molecular chaperone homology domain K04M3_05790 SM00562 K04M3_05790 K04M3_05810 SM00530 Helix-turn-helix XRE-family like proteins K04M3_05850 SM00564 beta-propeller repeat K04M3_05860 SM00382 ATPases associated with a variety of cellular activities K04M3_05900 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_05900 SM01240 K04M3_05900 K04M3_05930 SM00028 Tetratricopeptide repeats K04M3_06070 SM00495 Chitin-binding domain type 3 K04M3_06340 SM00271 DnaJ molecular chaperone homology domain K04M3_06420 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_06430 SM01211 K04M3_06430 K04M3_06540 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K04M3_06640 SM00861 Transketolase, pyrimidine binding domain K04M3_06690 SM00981 K04M3_06690 K04M3_06740 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs K04M3_06740 SM00475 5'-3' exonuclease K04M3_06760 SM00267 diguanylate cyclase K04M3_06770 SM00028 Tetratricopeptide repeats K04M3_06830 SM00382 ATPases associated with a variety of cellular activities K04M3_06830 SM00930 K04M3_06830 K04M3_06850 SM00354 helix_turn _helix lactose operon repressor K04M3_06870 SM00642 Alpha-amylase domain K04M3_06890 SM00862 Transcriptional regulatory protein, C terminal K04M3_06920 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_06950 SM00936 Penicillin-binding protein 5, C-terminal domain K04M3_07060 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_07060 SM01091 Transporter associated domain K04M3_07090 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_07330 SM01400 K04M3_07330 K04M3_07370 SM00937 K04M3_07370 K04M3_07440 SM00363 S4 RNA-binding domain K04M3_07450 SM00463 Small MutS-related domain K04M3_07500 SM01081 Putative carbohydrate binding domain K04M3_07650 SM00858 K04M3_07650 K04M3_07660 SM00260 Two component signalling adaptor domain K04M3_07660 SM00448 cheY-homologous receiver domain K04M3_07670 SM00138 Methyltransferase, chemotaxis proteins K04M3_07760 SM00047 Lysozyme subfamily 2 K04M3_07880 SM00771 ZipA, C-terminal domain (FtsZ-binding) K04M3_07890 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K04M3_07890 SM00292 breast cancer carboxy-terminal domain K04M3_07890 SM00532 Ligase N family K04M3_07940 SM00244 prohibitin homologues K04M3_08030 SM00028 Tetratricopeptide repeats K04M3_08090 SM00938 Nitrogen regulatory protein P-II K04M3_08100 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_08160 SM00862 Transcriptional regulatory protein, C terminal K04M3_08170 SM00387 Histidine kinase-like ATPases K04M3_08210 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. K04M3_08420 SM00861 Transketolase, pyrimidine binding domain K04M3_08450 SM00881 CoA binding domain K04M3_08470 SM00382 ATPases associated with a variety of cellular activities K04M3_08490 SM00342 helix_turn_helix, arabinose operon control protein K04M3_08500 SM00899 K04M3_08500 K04M3_08550 SM00836 DALR anticodon binding domain K04M3_08550 SM01016 Arginyl tRNA synthetase N terminal dom K04M3_08580 SM00020 Trypsin-like serine protease K04M3_08600 SM00487 DEAD-like helicases superfamily K04M3_08600 SM00491 K04M3_08600 K04M3_08660 SM00474 3'-5' exonuclease K04M3_08770 SM00825 Beta-ketoacyl synthase K04M3_08780 SM00822 K04M3_08780 K04M3_08800 SM00825 Beta-ketoacyl synthase K04M3_08920 SM00563 Phosphate acyltransferases K04M3_08980 SM00487 DEAD-like helicases superfamily K04M3_08980 SM00490 helicase superfamily c-terminal domain K04M3_09090 SM00382 ATPases associated with a variety of cellular activities K04M3_09090 SM00448 cheY-homologous receiver domain K04M3_09100 SM00387 Histidine kinase-like ATPases K04M3_09100 SM00388 His Kinase A (phosphoacceptor) domain K04M3_09130 SM00382 ATPases associated with a variety of cellular activities K04M3_09130 SM00994 ClpX C4-type zinc finger K04M3_09130 SM01086 C-terminal, D2-small domain, of ClpB protein K04M3_09140 SM00382 ATPases associated with a variety of cellular activities K04M3_09140 SM00464 Found in ATP-dependent protease La (LON) K04M3_09150 SM00411 bacterial (prokaryotic) histone like domain K04M3_09170 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K04M3_09190 SM01144 K04M3_09190 K04M3_09200 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K04M3_09210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K04M3_09270 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K04M3_09310 SM00563 Phosphate acyltransferases K04M3_09330 SM00978 K04M3_09330 K04M3_09450 SM00344 helix_turn_helix ASNC type K04M3_09510 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_09510 SM00267 diguanylate cyclase K04M3_09530 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_09570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_09570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_09670 SM00487 DEAD-like helicases superfamily K04M3_09670 SM00490 helicase superfamily c-terminal domain K04M3_09670 SM00982 K04M3_09670 K04M3_09670 SM01058 CarD-like/TRCF domain K04M3_09700 SM00382 ATPases associated with a variety of cellular activities K04M3_09730 SM00849 Metallo-beta-lactamase superfamily K04M3_09740 SM00382 ATPases associated with a variety of cellular activities K04M3_09800 SM00763 PrkA AAA domain K04M3_09880 SM00382 ATPases associated with a variety of cellular activities K04M3_09890 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_09890 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K04M3_09920 SM01276 K04M3_09920 K04M3_09970 SM00491 K04M3_09970 K04M3_10030 SM00357 Cold shock protein domain K04M3_10050 SM00382 ATPases associated with a variety of cellular activities K04M3_10050 SM01086 C-terminal, D2-small domain, of ClpB protein K04M3_10060 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_10120 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain K04M3_10120 SM00437 Bacterial DNA topoisomerase I DNA-binding domain K04M3_10120 SM00493 K04M3_10120 K04M3_10190 SM00354 helix_turn _helix lactose operon repressor K04M3_10210 SM00448 cheY-homologous receiver domain K04M3_10210 SM00862 Transcriptional regulatory protein, C terminal K04M3_10370 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K04M3_10380 SM00382 ATPases associated with a variety of cellular activities K04M3_10490 SM00028 Tetratricopeptide repeats K04M3_10560 SM00387 Histidine kinase-like ATPases K04M3_10560 SM00388 His Kinase A (phosphoacceptor) domain K04M3_10560 SM00448 cheY-homologous receiver domain K04M3_10680 SM00347 helix_turn_helix multiple antibiotic resistance protein K04M3_10740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_10790 SM01002 Alanine dehydrogenase/PNT, C-terminal domain K04M3_10790 SM01003 Alanine dehydrogenase/PNT, N-terminal domain K04M3_10800 SM00344 helix_turn_helix ASNC type K04M3_10810 SM00843 K04M3_10810 K04M3_10830 SM00382 ATPases associated with a variety of cellular activities K04M3_10890 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_10890 SM00876 Biotin and Thiamin Synthesis associated domain K04M3_11080 SM00528 Domain in histone-like proteins of HNS family K04M3_11190 SM00052 Putative diguanylate phosphodiesterase K04M3_11220 SM00840 K04M3_11220 K04M3_11370 SM01131 K04M3_11370 K04M3_11390 SM00382 ATPases associated with a variety of cellular activities K04M3_11400 SM00382 ATPases associated with a variety of cellular activities K04M3_11440 SM00382 ATPases associated with a variety of cellular activities K04M3_11550 SM00155 Phospholipase D. Active site motifs. K04M3_11610 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K04M3_11610 SM00382 ATPases associated with a variety of cellular activities K04M3_11640 SM00382 ATPases associated with a variety of cellular activities K04M3_11730 SM00387 Histidine kinase-like ATPases K04M3_11740 SM00448 cheY-homologous receiver domain K04M3_11740 SM00862 Transcriptional regulatory protein, C terminal K04M3_11760 SM00487 DEAD-like helicases superfamily K04M3_11760 SM00490 helicase superfamily c-terminal domain K04M3_11770 SM00363 S4 RNA-binding domain K04M3_11820 SM00382 ATPases associated with a variety of cellular activities K04M3_12010 SM00448 cheY-homologous receiver domain K04M3_12020 SM00387 Histidine kinase-like ATPases K04M3_12060 SM00382 ATPases associated with a variety of cellular activities K04M3_12070 SM00382 ATPases associated with a variety of cellular activities K04M3_12120 SM00267 diguanylate cyclase K04M3_12150 SM00919 Malic enzyme, NAD binding domain K04M3_12150 SM01274 K04M3_12150 K04M3_12160 SM00487 DEAD-like helicases superfamily K04M3_12160 SM00490 helicase superfamily c-terminal domain K04M3_12330 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_12330 SM00866 K04M3_12330 K04M3_12360 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain K04M3_12410 SM00530 Helix-turn-helix XRE-family like proteins K04M3_12480 SM00873 B3/4 domain K04M3_12480 SM00874 tRNA synthetase B5 domain K04M3_12480 SM00896 Ferredoxin-fold anticodon binding domain K04M3_12500 SM00411 bacterial (prokaryotic) histone like domain K04M3_12570 SM00479 K04M3_12570 K04M3_13090 SM00855 Phosphoglycerate mutase family K04M3_13130 SM00382 ATPases associated with a variety of cellular activities K04M3_13220 SM00245 tail specific protease K04M3_13240 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_13240 SM00895 K04M3_13240 K04M3_13300 SM01130 K04M3_13300 K04M3_13310 SM00382 ATPases associated with a variety of cellular activities K04M3_13350 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins K04M3_13370 SM00382 ATPases associated with a variety of cellular activities K04M3_13380 SM00382 ATPases associated with a variety of cellular activities K04M3_13650 SM01230 K04M3_13650 K04M3_13670 SM00530 Helix-turn-helix XRE-family like proteins K04M3_13870 SM00448 cheY-homologous receiver domain K04M3_13900 SM00387 Histidine kinase-like ATPases K04M3_14010 SM01230 K04M3_14010 K04M3_14030 SM00530 Helix-turn-helix XRE-family like proteins K04M3_14100 SM00052 Putative diguanylate phosphodiesterase K04M3_14120 SM00347 helix_turn_helix multiple antibiotic resistance protein K04M3_14180 SM00387 Histidine kinase-like ATPases K04M3_14180 SM00388 His Kinase A (phosphoacceptor) domain K04M3_14180 SM00448 cheY-homologous receiver domain K04M3_14190 SM00052 Putative diguanylate phosphodiesterase K04M3_14190 SM00267 diguanylate cyclase K04M3_14210 SM00028 Tetratricopeptide repeats K04M3_14270 SM00857 Resolvase, N terminal domain K04M3_14280 SM00530 Helix-turn-helix XRE-family like proteins K04M3_14340 SM00857 Resolvase, N terminal domain K04M3_14630 SM00382 ATPases associated with a variety of cellular activities K04M3_14640 SM00100 Cyclic nucleotide-monophosphate binding domain K04M3_14640 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_14650 SM00479 K04M3_14650 K04M3_14720 SM00028 Tetratricopeptide repeats K04M3_14800 SM00382 ATPases associated with a variety of cellular activities K04M3_14850 SM00420 helix_turn_helix, Deoxyribose operon repressor K04M3_14850 SM01134 K04M3_14850 K04M3_14880 SM00267 diguanylate cyclase K04M3_14930 SM00100 Cyclic nucleotide-monophosphate binding domain K04M3_14930 SM00387 Histidine kinase-like ATPases K04M3_14940 SM00448 cheY-homologous receiver domain K04M3_14950 SM00052 Putative diguanylate phosphodiesterase K04M3_14950 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K04M3_14950 SM00091 PAS domain K04M3_14950 SM00267 diguanylate cyclase K04M3_14960 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K04M3_15020 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. K04M3_15030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K04M3_15080 SM00382 ATPases associated with a variety of cellular activities K04M3_15130 SM00382 ATPases associated with a variety of cellular activities K04M3_15140 SM00382 ATPases associated with a variety of cellular activities K04M3_15250 SM00267 diguanylate cyclase K04M3_15250 SM01079 K04M3_15250 K04M3_15260 SM00479 K04M3_15260 K04M3_15340 SM00382 ATPases associated with a variety of cellular activities K04M3_15340 SM00487 DEAD-like helicases superfamily K04M3_15340 SM00490 helicase superfamily c-terminal domain K04M3_15340 SM00847 Helicase associated domain (HA2) Add an annotation K04M3_15490 SM00382 ATPases associated with a variety of cellular activities K04M3_15490 SM00448 cheY-homologous receiver domain K04M3_15620 SM00448 cheY-homologous receiver domain K04M3_15630 SM00267 diguanylate cyclase K04M3_15660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_15720 SM01144 K04M3_15720 K04M3_15750 SM00852 Probable molybdopterin binding domain K04M3_15770 SM00382 ATPases associated with a variety of cellular activities K04M3_15800 SM00382 ATPases associated with a variety of cellular activities K04M3_15800 SM00448 cheY-homologous receiver domain K04M3_15810 SM00387 Histidine kinase-like ATPases K04M3_15810 SM00388 His Kinase A (phosphoacceptor) domain K04M3_15820 SM00382 ATPases associated with a variety of cellular activities K04M3_15900 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K04M3_16030 SM00382 ATPases associated with a variety of cellular activities K04M3_16090 SM00100 Cyclic nucleotide-monophosphate binding domain K04M3_16090 SM00419 helix_turn_helix, cAMP Regulatory protein K04M3_16190 SM00897 FIST N domain K04M3_16190 SM01204 K04M3_16190 K04M3_16200 SM00387 Histidine kinase-like ATPases K04M3_16200 SM00388 His Kinase A (phosphoacceptor) domain K04M3_16200 SM00448 cheY-homologous receiver domain K04M3_16280 SM00382 ATPases associated with a variety of cellular activities K04M3_16300 SM00981 K04M3_16300 K04M3_16360 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. K04M3_16360 SM00245 tail specific protease K04M3_16370 SM00945 ProQ/FINO family K04M3_16390 SM00382 ATPases associated with a variety of cellular activities K04M3_16490 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_16530 SM00382 ATPases associated with a variety of cellular activities K04M3_16580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_16590 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K04M3_16600 SM00327 von Willebrand factor (vWF) type A domain K04M3_16630 SM00112 Cadherin repeats. K04M3_16630 SM00237 Domains in Na-Ca exchangers and integrin-beta4 K04M3_16630 SM00327 von Willebrand factor (vWF) type A domain K04M3_16630 SM00736 Dystroglycan-type cadherin-like domains. K04M3_16670 SM00028 Tetratricopeptide repeats K04M3_16670 SM00267 diguanylate cyclase K04M3_16680 SM00346 helix_turn_helix isocitrate lyase regulation K04M3_16760 SM00829 Enoylreductase K04M3_16770 SM00342 helix_turn_helix, arabinose operon control protein K04M3_16790 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_16790 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K04M3_16810 SM00829 Enoylreductase K04M3_16830 SM00382 ATPases associated with a variety of cellular activities K04M3_16850 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_16850 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K04M3_16960 SM00530 Helix-turn-helix XRE-family like proteins K04M3_17010 SM00020 Trypsin-like serine protease K04M3_17010 SM00495 Chitin-binding domain type 3 K04M3_17080 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_17080 SM00895 K04M3_17080 K04M3_17280 SM00382 ATPases associated with a variety of cellular activities K04M3_17360 SM00342 helix_turn_helix, arabinose operon control protein K04M3_17560 SM00342 helix_turn_helix, arabinose operon control protein K04M3_17610 SM00382 ATPases associated with a variety of cellular activities K04M3_17640 SM01350 K04M3_17640 K04M3_17670 SM00342 helix_turn_helix, arabinose operon control protein K04M3_17670 SM00871 Bacterial transcription activator, effector binding domain K04M3_17690 SM00448 cheY-homologous receiver domain K04M3_17700 SM00091 PAS domain K04M3_17700 SM00387 Histidine kinase-like ATPases K04M3_17990 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain K04M3_18010 SM01266 K04M3_18010 K04M3_18300 SM00547 Zinc finger domain K04M3_18310 SM00507 HNH nucleases K04M3_18470 SM00267 diguanylate cyclase K04M3_18690 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K04M3_18720 SM00387 Histidine kinase-like ATPases K04M3_18720 SM00388 His Kinase A (phosphoacceptor) domain K04M3_18720 SM00448 cheY-homologous receiver domain K04M3_18740 SM00530 Helix-turn-helix XRE-family like proteins K04M3_18800 SM00342 helix_turn_helix, arabinose operon control protein K04M3_18870 SM00052 Putative diguanylate phosphodiesterase K04M3_18880 SM00421 helix_turn_helix, Lux Regulon K04M3_18880 SM00448 cheY-homologous receiver domain K04M3_19050 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_19050 SM00387 Histidine kinase-like ATPases K04M3_19050 SM00388 His Kinase A (phosphoacceptor) domain K04M3_19050 SM00448 cheY-homologous receiver domain K04M3_19060 SM00421 helix_turn_helix, Lux Regulon K04M3_19060 SM00448 cheY-homologous receiver domain K04M3_19090 SM00528 Domain in histone-like proteins of HNS family K04M3_19100 SM00344 helix_turn_helix ASNC type K04M3_19380 SM00091 PAS domain K04M3_19380 SM00382 ATPases associated with a variety of cellular activities K04M3_19440 SM00387 Histidine kinase-like ATPases K04M3_19440 SM00388 His Kinase A (phosphoacceptor) domain K04M3_19440 SM00448 cheY-homologous receiver domain K04M3_19500 SM00052 Putative diguanylate phosphodiesterase K04M3_19530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_19530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_19560 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_19610 SM00100 Cyclic nucleotide-monophosphate binding domain K04M3_19610 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_19620 SM00479 K04M3_19620 K04M3_19630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_19630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_19650 SM00347 helix_turn_helix multiple antibiotic resistance protein K04M3_19660 SM00421 helix_turn_helix, Lux Regulon K04M3_19660 SM00448 cheY-homologous receiver domain K04M3_19670 SM00387 Histidine kinase-like ATPases K04M3_19670 SM01049 K04M3_19670 K04M3_19730 SM00849 Metallo-beta-lactamase superfamily K04M3_19910 SM00434 DNA Topoisomerase IV K04M3_19960 SM00852 Probable molybdopterin binding domain K04M3_20070 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K04M3_20070 SM00465 GIY-YIG type nucleases (URI domain) K04M3_20080 SM00421 helix_turn_helix, Lux Regulon K04M3_20080 SM00448 cheY-homologous receiver domain K04M3_20090 SM00486 DNA polymerase type-B family K04M3_20110 SM00841 Elongation factor P, C-terminal K04M3_20110 SM01185 K04M3_20110 K04M3_20130 SM00363 S4 RNA-binding domain K04M3_20160 SM00481 DNA polymerase alpha chain like domain K04M3_20240 SM00100 Cyclic nucleotide-monophosphate binding domain K04M3_20240 SM00419 helix_turn_helix, cAMP Regulatory protein K04M3_20280 SM00387 Histidine kinase-like ATPases K04M3_20280 SM00388 His Kinase A (phosphoacceptor) domain K04M3_20280 SM00448 cheY-homologous receiver domain K04M3_20380 SM00052 Putative diguanylate phosphodiesterase K04M3_20380 SM00091 PAS domain K04M3_20390 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_20450 SM00448 cheY-homologous receiver domain K04M3_20450 SM00862 Transcriptional regulatory protein, C terminal K04M3_20460 SM00387 Histidine kinase-like ATPases K04M3_20460 SM00388 His Kinase A (phosphoacceptor) domain K04M3_20560 SM00382 ATPases associated with a variety of cellular activities K04M3_20680 SM00421 helix_turn_helix, Lux Regulon K04M3_20680 SM00448 cheY-homologous receiver domain K04M3_20690 SM00387 Histidine kinase-like ATPases K04M3_20690 SM00388 His Kinase A (phosphoacceptor) domain K04M3_20720 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K04M3_20810 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family K04M3_20820 SM00028 Tetratricopeptide repeats K04M3_20840 SM00411 bacterial (prokaryotic) histone like domain K04M3_20850 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_20880 SM00822 K04M3_20880 K04M3_20910 SM00481 DNA polymerase alpha chain like domain K04M3_20920 SM00260 Two component signalling adaptor domain K04M3_20920 SM00448 cheY-homologous receiver domain K04M3_21070 SM00825 Beta-ketoacyl synthase K04M3_21090 SM00822 K04M3_21090 K04M3_21100 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. K04M3_21160 SM00363 S4 RNA-binding domain K04M3_21170 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_21190 SM00226 Low molecular weight phosphatase family K04M3_21280 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_21330 SM00267 diguanylate cyclase K04M3_21340 SM00642 Alpha-amylase domain K04M3_21350 SM00382 ATPases associated with a variety of cellular activities K04M3_21430 SM00382 ATPases associated with a variety of cellular activities K04M3_21440 SM00382 ATPases associated with a variety of cellular activities K04M3_21510 SM00852 Probable molybdopterin binding domain K04M3_21520 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_21550 SM00382 ATPases associated with a variety of cellular activities K04M3_21550 SM00448 cheY-homologous receiver domain K04M3_21560 SM00487 DEAD-like helicases superfamily K04M3_21560 SM00490 helicase superfamily c-terminal domain K04M3_21630 SM00900 K04M3_21630 K04M3_21650 SM00478 endonuclease III K04M3_21650 SM00525 K04M3_21650 K04M3_21690 SM00479 K04M3_21690 K04M3_21810 SM00859 Semialdehyde dehydrogenase, NAD binding domain K04M3_21920 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain K04M3_21920 SM00437 Bacterial DNA topoisomerase I DNA-binding domain K04M3_21920 SM00493 K04M3_21920 K04M3_21970 SM00870 K04M3_21970 K04M3_22010 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M3_22030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_22030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_22070 SM00098 Alkaline phosphatase homologues K04M3_22160 SM00493 K04M3_22160 K04M3_22180 SM00382 ATPases associated with a variety of cellular activities K04M3_22220 SM00448 cheY-homologous receiver domain K04M3_22310 SM00859 Semialdehyde dehydrogenase, NAD binding domain K04M3_22330 SM00825 Beta-ketoacyl synthase K04M3_22410 SM00463 Small MutS-related domain K04M3_22420 SM00855 Phosphoglycerate mutase family K04M3_22610 SM00382 ATPases associated with a variety of cellular activities K04M3_22630 SM00260 Two component signalling adaptor domain K04M3_22640 SM00260 Two component signalling adaptor domain K04M3_22660 SM00448 cheY-homologous receiver domain K04M3_22670 SM00073 Histidine Phosphotransfer domain K04M3_22670 SM00260 Two component signalling adaptor domain K04M3_22670 SM00387 Histidine kinase-like ATPases K04M3_22670 SM01231 K04M3_22670 K04M3_22690 SM00448 cheY-homologous receiver domain K04M3_22720 SM00382 ATPases associated with a variety of cellular activities K04M3_22720 SM00962 SRP54-type protein, GTPase domain K04M3_22850 SM00382 ATPases associated with a variety of cellular activities K04M3_22900 SM00382 ATPases associated with a variety of cellular activities K04M3_22900 SM00448 cheY-homologous receiver domain K04M3_22910 SM00387 Histidine kinase-like ATPases K04M3_22910 SM00388 His Kinase A (phosphoacceptor) domain K04M3_22920 SM00382 ATPases associated with a variety of cellular activities K04M3_23100 SM01130 K04M3_23100 K04M3_23180 SM00857 Resolvase, N terminal domain K04M3_23200 SM00382 ATPases associated with a variety of cellular activities K04M3_23350 SM00387 Histidine kinase-like ATPases K04M3_23350 SM00388 His Kinase A (phosphoacceptor) domain K04M3_23350 SM00448 cheY-homologous receiver domain K04M3_23390 SM00357 Cold shock protein domain K04M3_23440 SM00357 Cold shock protein domain K04M3_23460 SM00244 prohibitin homologues K04M3_23470 SM00244 prohibitin homologues K04M3_23500 SM00357 Cold shock protein domain K04M3_23560 SM00028 Tetratricopeptide repeats K04M3_23740 SM00479 K04M3_23740 K04M3_23770 SM00849 Metallo-beta-lactamase superfamily K04M3_23780 SM00257 Lysin motif K04M3_23810 SM00938 Nitrogen regulatory protein P-II K04M3_23830 SM00977 TilS substrate C-terminal domain K04M3_23850 SM00481 DNA polymerase alpha chain like domain K04M3_23910 SM00935 Outer membrane protein (OmpH-like) K04M3_23930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. K04M3_24020 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K04M3_24130 SM00849 Metallo-beta-lactamase superfamily K04M3_24250 SM00495 Chitin-binding domain type 3 K04M3_24250 SM00636 K04M3_24250 K04M3_24280 SM00487 DEAD-like helicases superfamily K04M3_24280 SM00490 helicase superfamily c-terminal domain K04M3_24460 SM00487 DEAD-like helicases superfamily K04M3_24630 SM00267 diguanylate cyclase K04M3_24630 SM00448 cheY-homologous receiver domain K04M3_24690 SM00900 K04M3_24690 K04M3_24800 SM00464 Found in ATP-dependent protease La (LON) K04M3_24850 SM00267 diguanylate cyclase K04M3_24880 SM00925 MltA specific insert domain K04M3_25170 SM00420 helix_turn_helix, Deoxyribose operon repressor K04M3_25170 SM01134 K04M3_25170 K04M3_25230 SM00354 helix_turn _helix lactose operon repressor K04M3_25260 SM00421 helix_turn_helix, Lux Regulon K04M3_25350 SM00838 Elongation factor G C-terminus K04M3_25350 SM00889 Elongation factor G, domain IV K04M3_25360 SM00382 ATPases associated with a variety of cellular activities K04M3_25420 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain K04M3_25430 SM01133 K04M3_25430 K04M3_25530 SM00052 Putative diguanylate phosphodiesterase K04M3_25530 SM00091 PAS domain K04M3_25530 SM00267 diguanylate cyclase K04M3_25570 SM00347 helix_turn_helix multiple antibiotic resistance protein K04M3_25580 SM00028 Tetratricopeptide repeats K04M3_25590 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_25590 SM00322 K homology RNA-binding domain K04M3_25600 SM01387 K04M3_25600 K04M3_25640 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_25710 SM00382 ATPases associated with a variety of cellular activities K04M3_25730 SM01103 K04M3_25730 K04M3_25780 SM00363 S4 RNA-binding domain K04M3_25860 SM00091 PAS domain K04M3_25860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_25860 SM00387 Histidine kinase-like ATPases K04M3_25860 SM00388 His Kinase A (phosphoacceptor) domain K04M3_25860 SM00448 cheY-homologous receiver domain K04M3_25900 SM00382 ATPases associated with a variety of cellular activities K04M3_25910 SM00382 ATPases associated with a variety of cellular activities K04M3_25950 SM01068 Putative carbohydrate binding domain K04M3_25970 SM00382 ATPases associated with a variety of cellular activities K04M3_26010 SM00938 Nitrogen regulatory protein P-II K04M3_26060 SM00487 DEAD-like helicases superfamily K04M3_26060 SM00490 helicase superfamily c-terminal domain K04M3_26060 SM00847 Helicase associated domain (HA2) Add an annotation K04M3_26160 SM00382 ATPases associated with a variety of cellular activities K04M3_26180 SM00947 Carbonic anhydrase K04M3_26240 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_26240 SM00895 K04M3_26240 K04M3_26250 SM00644 K04M3_26250 K04M3_26380 SM00382 ATPases associated with a variety of cellular activities K04M3_26380 SM00962 SRP54-type protein, GTPase domain K04M3_26380 SM00963 SRP54-type protein, helical bundle domain K04M3_26400 SM01091 Transporter associated domain K04M3_26460 SM00829 Enoylreductase K04M3_26620 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain K04M3_26640 SM00382 ATPases associated with a variety of cellular activities K04M3_26660 SM00533 DNA-binding domain of DNA mismatch repair MUTS family K04M3_26660 SM00534 ATPase domain of DNA mismatch repair MUTS family K04M3_26680 SM00257 Lysin motif K04M3_26750 SM01192 K04M3_26750 K04M3_26750 SM01193 K04M3_26750 K04M3_26790 SM00954 Region found in RelA / SpoT proteins K04M3_26810 SM00073 Histidine Phosphotransfer domain K04M3_26810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_26810 SM00387 Histidine kinase-like ATPases K04M3_26810 SM00388 His Kinase A (phosphoacceptor) domain K04M3_26810 SM00448 cheY-homologous receiver domain K04M3_26860 SM00358 Double-stranded RNA binding motif K04M3_26860 SM00535 Ribonuclease III family K04M3_26880 SM00838 Elongation factor G C-terminus K04M3_27130 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M3_27160 SM00861 Transketolase, pyrimidine binding domain K04M3_27190 SM00731 SprT homologues. K04M3_27240 SM00732 Likely ribonuclease with RNase H fold. K04M3_27260 SM00382 ATPases associated with a variety of cellular activities K04M3_27300 SM01152 K04M3_27300 K04M3_27330 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_27370 SM00478 endonuclease III K04M3_27370 SM00525 K04M3_27370 K04M3_27470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_27470 SM01049 K04M3_27470 K04M3_27620 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K04M3_27630 SM00354 helix_turn _helix lactose operon repressor K04M3_27690 SM00495 Chitin-binding domain type 3 K04M3_27800 SM00347 helix_turn_helix multiple antibiotic resistance protein K04M3_27890 SM00563 Phosphate acyltransferases K04M3_27960 SM00382 ATPases associated with a variety of cellular activities K04M3_27980 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_28010 SM00382 ATPases associated with a variety of cellular activities K04M3_28070 SM00924 MgtE intracellular N domain K04M3_28130 SM00487 DEAD-like helicases superfamily K04M3_28130 SM00490 helicase superfamily c-terminal domain K04M3_28140 SM00670 Large family of predicted nucleotide-binding domains K04M3_28180 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_28320 SM00382 ATPases associated with a variety of cellular activities K04M3_28330 SM00028 Tetratricopeptide repeats K04M3_28350 SM00965 Secretin and TonB N terminus short domain K04M3_28390 SM00052 Putative diguanylate phosphodiesterase K04M3_28390 SM00267 diguanylate cyclase K04M3_28410 SM00421 helix_turn_helix, Lux Regulon K04M3_28490 SM01018 B12 binding domain K04M3_28730 SM01005 Alanine racemase, C-terminal domain K04M3_28850 SM00965 Secretin and TonB N terminus short domain K04M3_28890 SM00842 Cell division protein FtsA K04M3_28990 SM00859 Semialdehyde dehydrogenase, NAD binding domain K04M3_29070 SM00919 Malic enzyme, NAD binding domain K04M3_29070 SM01274 K04M3_29070 K04M3_29110 SM00838 Elongation factor G C-terminus K04M3_29110 SM00889 Elongation factor G, domain IV K04M3_29190 SM00320 WD40 repeats K04M3_29260 SM00382 ATPases associated with a variety of cellular activities K04M3_29310 SM00100 Cyclic nucleotide-monophosphate binding domain K04M3_29310 SM00419 helix_turn_helix, cAMP Regulatory protein K04M3_29320 SM01150 K04M3_29320 K04M3_29410 SM00967 RNA 2'-O ribose methyltransferase substrate binding K04M3_29420 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_29420 SM00357 Cold shock protein domain K04M3_29420 SM00955 K04M3_29420 K04M3_29450 SM00671 Sel1-like repeats. K04M3_29460 SM00788 Adenylosuccinate synthetase K04M3_29480 SM00244 prohibitin homologues K04M3_29490 SM00244 prohibitin homologues K04M3_29530 SM00853 MutL C terminal dimerisation domain K04M3_29530 SM01340 K04M3_29530 K04M3_29540 SM00257 Lysin motif K04M3_29540 SM00646 K04M3_29540 K04M3_29700 SM00479 K04M3_29700 K04M3_29760 SM00450 Rhodanese Homology Domain K04M3_29790 SM00971 Serine acetyltransferase, N-terminal K04M3_29900 SM00841 Elongation factor P, C-terminal K04M3_29900 SM01185 K04M3_29900 K04M3_29950 SM00883 Chaperonin 10 Kd subunit K04M3_30000 SM00448 cheY-homologous receiver domain K04M3_30000 SM00862 Transcriptional regulatory protein, C terminal K04M3_30010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_30010 SM00387 Histidine kinase-like ATPases K04M3_30010 SM00388 His Kinase A (phosphoacceptor) domain K04M3_30080 SM00421 helix_turn_helix, Lux Regulon K04M3_30080 SM00448 cheY-homologous receiver domain K04M3_30090 SM01091 Transporter associated domain K04M3_30150 SM00387 Histidine kinase-like ATPases K04M3_30150 SM00388 His Kinase A (phosphoacceptor) domain K04M3_30150 SM00448 cheY-homologous receiver domain K04M3_30180 SM00479 K04M3_30180 K04M3_30220 SM00878 Biotin carboxylase C-terminal domain K04M3_30270 SM00382 ATPases associated with a variety of cellular activities K04M3_30390 SM00862 Transcriptional regulatory protein, C terminal K04M3_30400 SM00422 helix_turn_helix, mercury resistance K04M3_30410 SM00798 AICARFT/IMPCHase bienzyme K04M3_30410 SM00851 MGS-like domain K04M3_30420 SM01209 K04M3_30420 K04M3_30420 SM01210 K04M3_30420 K04M3_30440 SM00411 bacterial (prokaryotic) histone like domain K04M3_30450 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_30480 SM00986 Uracil DNA glycosylase superfamily K04M3_30480 SM00987 UreE urease accessory protein, C-terminal domain K04M3_30520 SM00663 RNA polymerase I subunit A N-terminus K04M3_30570 SM00649 Ribosomal protein L11/L12 K04M3_30580 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. K04M3_30580 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. K04M3_30690 SM00155 Phospholipase D. Active site motifs. K04M3_30830 SM00360 RNA recognition motif K04M3_30940 SM00563 Phosphate acyltransferases K04M3_30990 SM00450 Rhodanese Homology Domain K04M3_31020 SM00382 ATPases associated with a variety of cellular activities K04M3_31030 SM00382 ATPases associated with a variety of cellular activities K04M3_31030 SM00962 SRP54-type protein, GTPase domain K04M3_31030 SM00963 SRP54-type protein, helical bundle domain K04M3_31140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M3_31150 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K04M3_31160 SM00052 Putative diguanylate phosphodiesterase K04M3_31220 SM01144 K04M3_31220 K04M3_31230 SM00052 Putative diguanylate phosphodiesterase K04M3_31230 SM00897 FIST N domain K04M3_31230 SM01204 K04M3_31230 K04M3_31290 SM01219 K04M3_31290 K04M3_31340 SM00028 Tetratricopeptide repeats K04M3_31460 SM00357 Cold shock protein domain K04M3_31460 SM00382 ATPases associated with a variety of cellular activities K04M3_31460 SM00959 Rho termination factor, N-terminal domain K04M3_31480 SM00487 DEAD-like helicases superfamily K04M3_31480 SM00490 helicase superfamily c-terminal domain K04M3_31530 SM00341 Helicase and RNase D C-terminal K04M3_31530 SM00487 DEAD-like helicases superfamily K04M3_31530 SM00490 helicase superfamily c-terminal domain K04M3_31530 SM00956 K04M3_31530 K04M3_31550 SM00342 helix_turn_helix, arabinose operon control protein K04M3_31670 SM00876 Biotin and Thiamin Synthesis associated domain K04M3_31890 SM01001 AIR carboxylase K04M3_31940 SM00257 Lysin motif K04M3_32080 SM00563 Phosphate acyltransferases K04M3_32100 SM00382 ATPases associated with a variety of cellular activities K04M3_32180 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_32230 SM00382 ATPases associated with a variety of cellular activities K04M3_32310 SM00470 ParB-like nuclease domain K04M3_32340 SM01228 K04M3_32340 K04M3_32400 SM00382 ATPases associated with a variety of cellular activities K04M3_32420 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_32420 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K04M3_32440 SM00470 ParB-like nuclease domain K04M3_32590 SM00382 ATPases associated with a variety of cellular activities K04M3_32600 SM00052 Putative diguanylate phosphodiesterase K04M3_32600 SM00267 diguanylate cyclase K04M3_32630 SM00448 cheY-homologous receiver domain K04M3_32640 SM00387 Histidine kinase-like ATPases K04M3_32660 SM00421 helix_turn_helix, Lux Regulon K04M3_32670 SM00342 helix_turn_helix, arabinose operon control protein K04M3_32720 SM00360 RNA recognition motif K04M3_32760 SM00344 helix_turn_helix ASNC type K04M3_32780 SM00382 ATPases associated with a variety of cellular activities K04M3_32800 SM00487 DEAD-like helicases superfamily K04M3_32800 SM00490 helicase superfamily c-terminal domain K04M3_32820 SM00342 helix_turn_helix, arabinose operon control protein K04M3_32830 SM00829 Enoylreductase K04M3_32990 SM00347 helix_turn_helix multiple antibiotic resistance protein K04M3_33020 SM00342 helix_turn_helix, arabinose operon control protein K04M3_33020 SM00871 Bacterial transcription activator, effector binding domain K04M3_33030 SM00342 helix_turn_helix, arabinose operon control protein K04M3_33080 SM00382 ATPases associated with a variety of cellular activities K04M3_33130 SM00448 cheY-homologous receiver domain K04M3_33130 SM00862 Transcriptional regulatory protein, C terminal K04M3_33140 SM00387 Histidine kinase-like ATPases K04M3_33270 SM00382 ATPases associated with a variety of cellular activities K04M3_33280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_33280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_33350 SM00857 Resolvase, N terminal domain K04M3_33360 SM00354 helix_turn _helix lactose operon repressor K04M3_33430 SM00354 helix_turn _helix lactose operon repressor K04M3_33540 SM00642 Alpha-amylase domain K04M3_33580 SM00642 Alpha-amylase domain K04M3_33600 SM00642 Alpha-amylase domain K04M3_33610 SM00671 Sel1-like repeats. K04M3_33650 SM00966 SpoVT / AbrB like domain K04M3_33730 SM00421 helix_turn_helix, Lux Regulon K04M3_33760 SM00642 Alpha-amylase domain K04M3_33780 SM00642 Alpha-amylase domain K04M3_33900 SM00226 Low molecular weight phosphatase family K04M3_33970 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. K04M3_34000 SM00450 Rhodanese Homology Domain K04M3_34020 SM00936 Penicillin-binding protein 5, C-terminal domain K04M3_34030 SM00642 Alpha-amylase domain K04M3_34040 SM00342 helix_turn_helix, arabinose operon control protein K04M3_34260 SM00448 cheY-homologous receiver domain K04M3_34260 SM00862 Transcriptional regulatory protein, C terminal K04M3_34270 SM00387 Histidine kinase-like ATPases K04M3_34270 SM00388 His Kinase A (phosphoacceptor) domain K04M3_34580 SM00382 ATPases associated with a variety of cellular activities K04M3_34630 SM00382 ATPases associated with a variety of cellular activities K04M3_34650 SM00020 Trypsin-like serine protease K04M3_34690 SM00481 DNA polymerase alpha chain like domain K04M3_34770 SM00448 cheY-homologous receiver domain K04M3_34770 SM00862 Transcriptional regulatory protein, C terminal K04M3_34780 SM00388 His Kinase A (phosphoacceptor) domain K04M3_34810 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_34820 SM00052 Putative diguanylate phosphodiesterase K04M3_34820 SM00267 diguanylate cyclase K04M3_34840 SM00829 Enoylreductase K04M3_34850 SM00972 Spore Coat Protein U domain K04M3_34860 SM00972 Spore Coat Protein U domain K04M3_34890 SM00972 Spore Coat Protein U domain K04M3_34900 SM01057 Eukaryotic-type carbonic anhydrase K04M3_34970 SM00382 ATPases associated with a variety of cellular activities K04M3_35000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_35000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_35040 SM00587 ZnF_C4 abd HLH domain containing kinases domain K04M3_35110 SM00382 ATPases associated with a variety of cellular activities K04M3_35150 SM00267 diguanylate cyclase K04M3_35160 SM00028 Tetratricopeptide repeats K04M3_35200 SM00422 helix_turn_helix, mercury resistance K04M3_35220 SM00257 Lysin motif K04M3_35240 SM00487 DEAD-like helicases superfamily K04M3_35240 SM00490 helicase superfamily c-terminal domain K04M3_35300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_35300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_35340 SM00382 ATPases associated with a variety of cellular activities K04M3_35350 SM00267 diguanylate cyclase K04M3_35370 SM00327 von Willebrand factor (vWF) type A domain K04M3_35380 SM00327 von Willebrand factor (vWF) type A domain K04M3_35420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_35420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_35440 SM00421 helix_turn_helix, Lux Regulon K04M3_35450 SM00421 helix_turn_helix, Lux Regulon K04M3_35470 SM00382 ATPases associated with a variety of cellular activities K04M3_35520 SM00382 ATPases associated with a variety of cellular activities K04M3_35540 SM00382 ATPases associated with a variety of cellular activities K04M3_35550 SM00387 Histidine kinase-like ATPases K04M3_35550 SM00388 His Kinase A (phosphoacceptor) domain K04M3_35560 SM00448 cheY-homologous receiver domain K04M3_35560 SM00862 Transcriptional regulatory protein, C terminal K04M3_35690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K04M3_35690 SM00382 ATPases associated with a variety of cellular activities K04M3_35700 SM00849 Metallo-beta-lactamase superfamily K04M3_35740 SM01060 K04M3_35740 K04M3_35760 SM00829 Enoylreductase K04M3_35780 SM01022 K04M3_35780 K04M3_35900 SM00382 ATPases associated with a variety of cellular activities K04M3_35970 SM00342 helix_turn_helix, arabinose operon control protein K04M3_36120 SM00382 ATPases associated with a variety of cellular activities K04M3_36180 SM00729 Elongator protein 3, MiaB family, Radical SAM K04M3_36220 SM00260 Two component signalling adaptor domain K04M3_36220 SM00448 cheY-homologous receiver domain K04M3_36250 SM00382 ATPases associated with a variety of cellular activities K04M3_36260 SM00382 ATPases associated with a variety of cellular activities K04M3_36290 SM00420 helix_turn_helix, Deoxyribose operon repressor K04M3_36290 SM01134 K04M3_36290 K04M3_36320 SM01007 Class II Aldolase and Adducin N-terminal domain K04M3_36380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_36380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_36450 SM00422 helix_turn_helix, mercury resistance K04M3_36460 SM00642 Alpha-amylase domain K04M3_36470 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K04M3_36520 SM00382 ATPases associated with a variety of cellular activities K04M3_36610 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K04M3_36610 SM00267 diguanylate cyclase K04M3_36680 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K04M3_36710 SM00382 ATPases associated with a variety of cellular activities K04M3_36740 SM01119 K04M3_36740 K04M3_36850 SM00342 helix_turn_helix, arabinose operon control protein K04M3_36870 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K04M3_36980 SM00530 Helix-turn-helix XRE-family like proteins K04M3_37020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_37020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_37080 SM00052 Putative diguanylate phosphodiesterase K04M3_37080 SM00267 diguanylate cyclase K04M3_37200 SM00342 helix_turn_helix, arabinose operon control protein K04M3_37370 SM01322 K04M3_37370 K04M3_37380 SM00357 Cold shock protein domain K04M3_37400 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_37400 SM00267 diguanylate cyclase K04M3_37430 SM00382 ATPases associated with a variety of cellular activities K04M3_37440 SM00382 ATPases associated with a variety of cellular activities K04M3_37460 SM00448 cheY-homologous receiver domain K04M3_37510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_37510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_37730 SM00487 DEAD-like helicases superfamily K04M3_37730 SM00490 helicase superfamily c-terminal domain K04M3_37770 SM00357 Cold shock protein domain K04M3_37810 SM00833 Cobalamin synthesis protein cobW C-terminal domain K04M3_37820 SM00487 DEAD-like helicases superfamily K04M3_37820 SM00490 helicase superfamily c-terminal domain K04M3_37860 SM00052 Putative diguanylate phosphodiesterase K04M3_37870 SM00382 ATPases associated with a variety of cellular activities K04M3_37880 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_37930 SM00342 helix_turn_helix, arabinose operon control protein K04M3_37940 SM00316 Ribosomal protein S1-like RNA-binding domain K04M3_37940 SM00357 Cold shock protein domain K04M3_37940 SM00955 K04M3_37940 K04M3_37950 SM00487 DEAD-like helicases superfamily K04M3_37950 SM00490 helicase superfamily c-terminal domain K04M3_38030 SM00342 helix_turn_helix, arabinose operon control protein K04M3_38110 SM00833 Cobalamin synthesis protein cobW C-terminal domain K04M3_38120 SM00833 Cobalamin synthesis protein cobW C-terminal domain K04M3_38160 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K04M3_38160 SM00091 PAS domain K04M3_38160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_38220 SM00422 helix_turn_helix, mercury resistance K04M3_38290 SM00822 K04M3_38290 K04M3_38460 SM00382 ATPases associated with a variety of cellular activities K04M3_38470 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_38470 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K04M3_38560 SM00893 Electron transfer flavoprotein domain K04M3_38580 SM00861 Transketolase, pyrimidine binding domain K04M3_38690 SM00448 cheY-homologous receiver domain K04M3_38690 SM00862 Transcriptional regulatory protein, C terminal K04M3_38700 SM00388 His Kinase A (phosphoacceptor) domain K04M3_38710 SM00871 Bacterial transcription activator, effector binding domain K04M3_38750 SM00028 Tetratricopeptide repeats K04M3_38750 SM00267 diguanylate cyclase K04M3_38790 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K04M3_38830 SM01012 K04M3_38830 K04M3_38860 SM00382 ATPases associated with a variety of cellular activities K04M3_38930 SM00331 Sigma factor PP2C-like phosphatases K04M3_38930 SM00448 cheY-homologous receiver domain K04M3_38970 SM00220 Serine/Threonine protein kinases, catalytic domain K04M3_38980 SM00240 Forkhead associated domain K04M3_39040 SM00331 Sigma factor PP2C-like phosphatases K04M3_39040 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain K04M3_39130 SM00382 ATPases associated with a variety of cellular activities K04M3_39130 SM01086 C-terminal, D2-small domain, of ClpB protein K04M3_39270 SM00382 ATPases associated with a variety of cellular activities K04M3_39350 SM01005 Alanine racemase, C-terminal domain K04M3_39360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_39360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_39370 SM01311 K04M3_39370 K04M3_39410 SM00493 K04M3_39410 K04M3_39410 SM00778 Zinc-binding domain of primase-helicase K04M3_39420 SM00482 DNA polymerase A domain K04M3_39910 SM00642 Alpha-amylase domain K04M3_39940 SM00880 K04M3_39940 K04M3_39980 SM00267 diguanylate cyclase K04M3_40000 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K04M3_40000 SM00267 diguanylate cyclase K04M3_40230 SM00387 Histidine kinase-like ATPases K04M3_40240 SM00421 helix_turn_helix, Lux Regulon K04M3_40240 SM00448 cheY-homologous receiver domain K04M3_40330 SM00450 Rhodanese Homology Domain K04M3_40340 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K04M3_40410 SM00342 helix_turn_helix, arabinose operon control protein K04M3_40490 SM00382 ATPases associated with a variety of cellular activities K04M3_40510 SM00267 diguanylate cyclase K04M3_40510 SM00448 cheY-homologous receiver domain K04M3_40520 SM00267 diguanylate cyclase K04M3_40550 SM01002 Alanine dehydrogenase/PNT, C-terminal domain K04M3_40550 SM01003 Alanine dehydrogenase/PNT, N-terminal domain K04M3_40570 SM00387 Histidine kinase-like ATPases K04M3_40570 SM00388 His Kinase A (phosphoacceptor) domain K04M3_40580 SM00448 cheY-homologous receiver domain K04M3_40580 SM00862 Transcriptional regulatory protein, C terminal K04M3_40680 SM00369 Leucine-rich repeats, typical (most populated) subfamily K04M3_41230 SM00881 CoA binding domain K04M3_41610 SM00881 CoA binding domain K04M3_41650 SM00091 PAS domain K04M3_41650 SM00267 diguanylate cyclase K04M3_41650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_41670 SM00796 Allophanate hydrolase subunit 1 K04M3_41680 SM00797 Allophanate hydrolase subunit 2 K04M3_41710 SM00382 ATPases associated with a variety of cellular activities K04M3_41740 SM00052 Putative diguanylate phosphodiesterase K04M3_41740 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K04M3_41740 SM00267 diguanylate cyclase K04M3_41760 SM00271 DnaJ molecular chaperone homology domain K04M3_41890 SM00782 PhnA Zinc-Ribbon K04M3_41970 SM00116 Domain in cystathionine beta-synthase and other proteins. K04M3_41980 SM00867 YceI-like domain K04M3_42020 SM00052 Putative diguanylate phosphodiesterase K04M3_42030 SM00487 DEAD-like helicases superfamily K04M3_42030 SM00490 helicase superfamily c-terminal domain K04M3_42060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_42130 SM00495 Chitin-binding domain type 3 K04M3_42130 SM00636 K04M3_42130 K04M3_42140 SM00342 helix_turn_helix, arabinose operon control protein K04M3_42170 SM00382 ATPases associated with a variety of cellular activities K04M3_42190 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_42190 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K04M3_42210 SM00052 Putative diguanylate phosphodiesterase K04M3_42240 SM00354 helix_turn _helix lactose operon repressor K04M3_42340 SM00530 Helix-turn-helix XRE-family like proteins K04M3_42390 SM00849 Metallo-beta-lactamase superfamily K04M3_42430 SM00342 helix_turn_helix, arabinose operon control protein K04M3_42480 SM00479 K04M3_42480 K04M3_42490 SM00382 ATPases associated with a variety of cellular activities K04M3_42550 SM00422 helix_turn_helix, mercury resistance K04M3_42620 SM00924 MgtE intracellular N domain K04M3_42700 SM00953 K04M3_42700 K04M3_42730 SM00704 CDGSH-type zinc finger. Function unknown. K04M3_42860 SM00260 Two component signalling adaptor domain K04M3_42860 SM00448 cheY-homologous receiver domain K04M3_42870 SM00421 helix_turn_helix, Lux Regulon K04M3_42870 SM00448 cheY-homologous receiver domain K04M3_42890 SM00267 diguanylate cyclase K04M3_42900 SM00421 helix_turn_helix, Lux Regulon K04M3_42900 SM00448 cheY-homologous receiver domain K04M3_42910 SM00052 Putative diguanylate phosphodiesterase K04M3_42910 SM00448 cheY-homologous receiver domain K04M3_42920 SM00062 Bacterial periplasmic substrate-binding proteins K04M3_42920 SM00387 Histidine kinase-like ATPases K04M3_42920 SM00388 His Kinase A (phosphoacceptor) domain K04M3_42920 SM00448 cheY-homologous receiver domain K04M3_42950 SM00387 Histidine kinase-like ATPases K04M3_42950 SM00448 cheY-homologous receiver domain K04M3_43020 SM00990 K04M3_43020 K04M3_43050 SM00046 Diacylglycerol kinase catalytic domain (presumed) K04M3_43090 SM00327 von Willebrand factor (vWF) type A domain K04M3_43100 SM00327 von Willebrand factor (vWF) type A domain K04M3_43180 SM00862 Transcriptional regulatory protein, C terminal K04M3_43210 SM00073 Histidine Phosphotransfer domain K04M3_43210 SM00387 Histidine kinase-like ATPases K04M3_43210 SM00388 His Kinase A (phosphoacceptor) domain K04M3_43210 SM00448 cheY-homologous receiver domain K04M3_43230 SM00851 MGS-like domain K04M3_43320 SM00342 helix_turn_helix, arabinose operon control protein K04M3_43330 SM00422 helix_turn_helix, mercury resistance K04M3_43340 SM00382 ATPases associated with a variety of cellular activities K04M3_43420 SM00354 helix_turn _helix lactose operon repressor K04M3_43460 SM00382 ATPases associated with a variety of cellular activities K04M3_43480 SM00052 Putative diguanylate phosphodiesterase K04M3_43480 SM00267 diguanylate cyclase K04M3_43580 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K04M3_43600 SM00387 Histidine kinase-like ATPases K04M3_43600 SM00388 His Kinase A (phosphoacceptor) domain K04M3_43600 SM00448 cheY-homologous receiver domain K04M3_43630 SM00244 prohibitin homologues K04M3_43660 SM00382 ATPases associated with a variety of cellular activities K04M3_43720 SM00028 Tetratricopeptide repeats K04M3_43720 SM00267 diguanylate cyclase K04M3_43730 SM00822 K04M3_43730 K04M3_43800 SM00422 helix_turn_helix, mercury resistance K04M3_43840 SM00878 Biotin carboxylase C-terminal domain K04M3_43880 SM01266 K04M3_43880 K04M3_43890 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_44020 SM00382 ATPases associated with a variety of cellular activities K04M3_44070 SM00382 ATPases associated with a variety of cellular activities K04M3_44090 SM00893 Electron transfer flavoprotein domain K04M3_44100 SM00893 Electron transfer flavoprotein domain K04M3_44140 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_44140 SM00866 K04M3_44140 K04M3_44230 SM00822 K04M3_44230 K04M3_44240 SM00347 helix_turn_helix multiple antibiotic resistance protein K04M3_44250 SM00342 helix_turn_helix, arabinose operon control protein K04M3_44350 SM00240 Forkhead associated domain K04M3_44390 SM00344 helix_turn_helix ASNC type K04M3_44460 SM00220 Serine/Threonine protein kinases, catalytic domain K04M3_44530 SM00382 ATPases associated with a variety of cellular activities K04M3_44530 SM01086 C-terminal, D2-small domain, of ClpB protein K04M3_44540 SM00382 ATPases associated with a variety of cellular activities K04M3_44620 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_44630 SM00736 Dystroglycan-type cadherin-like domains. K04M3_44680 SM00028 Tetratricopeptide repeats K04M3_44680 SM00530 Helix-turn-helix XRE-family like proteins K04M3_44730 SM01240 K04M3_44730 K04M3_44760 SM00448 cheY-homologous receiver domain K04M3_44830 SM00852 Probable molybdopterin binding domain K04M3_44870 SM00450 Rhodanese Homology Domain K04M3_44900 SM00861 Transketolase, pyrimidine binding domain K04M3_44910 SM00091 PAS domain K04M3_44910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_44970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_45040 SM00421 helix_turn_helix, Lux Regulon K04M3_45040 SM00448 cheY-homologous receiver domain K04M3_45050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_45050 SM00387 Histidine kinase-like ATPases K04M3_45080 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K04M3_45150 SM00822 K04M3_45150 K04M3_45240 SM00344 helix_turn_helix ASNC type K04M3_45290 SM00347 helix_turn_helix multiple antibiotic resistance protein K04M3_45300 SM00387 Histidine kinase-like ATPases K04M3_45300 SM00388 His Kinase A (phosphoacceptor) domain K04M3_45300 SM00448 cheY-homologous receiver domain K04M3_45320 SM00465 GIY-YIG type nucleases (URI domain) K04M3_45370 SM00387 Histidine kinase-like ATPases K04M3_45370 SM00388 His Kinase A (phosphoacceptor) domain K04M3_45370 SM00448 cheY-homologous receiver domain K04M3_45380 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K04M3_45440 SM00344 helix_turn_helix ASNC type K04M3_45460 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_45480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_45480 SM00387 Histidine kinase-like ATPases K04M3_45480 SM00388 His Kinase A (phosphoacceptor) domain K04M3_45490 SM00448 cheY-homologous receiver domain K04M3_45490 SM00862 Transcriptional regulatory protein, C terminal K04M3_45520 SM00342 helix_turn_helix, arabinose operon control protein K04M3_45560 SM00924 MgtE intracellular N domain K04M3_45590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K04M3_45600 SM00530 Helix-turn-helix XRE-family like proteins K04M3_45610 SM00563 Phosphate acyltransferases K04M3_45700 SM00448 cheY-homologous receiver domain K04M3_45700 SM00862 Transcriptional regulatory protein, C terminal K04M3_45710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_45710 SM00387 Histidine kinase-like ATPases K04M3_45710 SM00388 His Kinase A (phosphoacceptor) domain K04M3_45800 SM00357 Cold shock protein domain K04M3_45860 SM00936 Penicillin-binding protein 5, C-terminal domain K04M3_45890 SM00640 Glycosyl hydrolases family 32 K04M3_45920 SM00354 helix_turn _helix lactose operon repressor K04M3_45950 SM00822 K04M3_45950 K04M3_46030 SM00342 helix_turn_helix, arabinose operon control protein K04M3_46030 SM00871 Bacterial transcription activator, effector binding domain K04M3_46080 SM00487 DEAD-like helicases superfamily K04M3_46080 SM00490 helicase superfamily c-terminal domain K04M3_46140 SM00829 Enoylreductase K04M3_46170 SM00342 helix_turn_helix, arabinose operon control protein K04M3_46180 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_46210 SM00344 helix_turn_helix ASNC type K04M3_46280 SM00788 Adenylosuccinate synthetase K04M3_46290 SM00870 K04M3_46290 K04M3_46330 SM00421 helix_turn_helix, Lux Regulon K04M3_46400 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_46400 SM00866 K04M3_46400 K04M3_46450 SM00382 ATPases associated with a variety of cellular activities K04M3_46550 SM00155 Phospholipase D. Active site motifs. K04M3_46570 SM01022 K04M3_46570 K04M3_46580 SM00028 Tetratricopeptide repeats K04M3_46600 SM00422 helix_turn_helix, mercury resistance K04M3_46640 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K04M3_46650 SM00838 Elongation factor G C-terminus K04M3_46650 SM00889 Elongation factor G, domain IV K04M3_46720 SM00382 ATPases associated with a variety of cellular activities K04M3_46870 SM00420 helix_turn_helix, Deoxyribose operon repressor K04M3_46870 SM01134 K04M3_46870 K04M3_46930 SM00342 helix_turn_helix, arabinose operon control protein K04M3_47010 SM00883 Chaperonin 10 Kd subunit K04M3_47020 SM00450 Rhodanese Homology Domain K04M3_47050 SM01240 K04M3_47050 K04M3_47200 SM00858 K04M3_47200 K04M3_47330 SM00631 K04M3_47330 K04M3_47390 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_47390 SM00866 K04M3_47390 K04M3_47410 SM00382 ATPases associated with a variety of cellular activities K04M3_47470 SM00354 helix_turn _helix lactose operon repressor K04M3_47570 SM00382 ATPases associated with a variety of cellular activities K04M3_47600 SM01057 Eukaryotic-type carbonic anhydrase K04M3_47710 SM01266 K04M3_47710 K04M3_47770 SM00267 diguanylate cyclase K04M3_47790 SM00530 Helix-turn-helix XRE-family like proteins K04M3_47800 SM00267 diguanylate cyclase K04M3_47800 SM01079 K04M3_47800 K04M3_47990 SM00267 diguanylate cyclase K04M3_48000 SM00382 ATPases associated with a variety of cellular activities K04M3_48000 SM00448 cheY-homologous receiver domain K04M3_48010 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K04M3_48010 SM00387 Histidine kinase-like ATPases K04M3_48110 SM00849 Metallo-beta-lactamase superfamily K04M3_48190 SM00382 ATPases associated with a variety of cellular activities K04M3_48330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_48330 SM00387 Histidine kinase-like ATPases K04M3_48330 SM00388 His Kinase A (phosphoacceptor) domain K04M3_48340 SM00448 cheY-homologous receiver domain K04M3_48340 SM00862 Transcriptional regulatory protein, C terminal K04M3_48530 SM00382 ATPases associated with a variety of cellular activities K04M3_48590 SM00014 Acid phosphatase homologues K04M3_48630 SM00822 K04M3_48630 K04M3_48700 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_48910 SM00495 Chitin-binding domain type 3 K04M3_48920 SM00344 helix_turn_helix ASNC type K04M3_48970 SM00829 Enoylreductase K04M3_49020 SM00267 diguanylate cyclase K04M3_49060 SM00849 Metallo-beta-lactamase superfamily K04M3_49100 SM00267 diguanylate cyclase K04M3_49140 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins K04M3_49140 SM00495 Chitin-binding domain type 3 K04M3_49140 SM00636 K04M3_49140 K04M3_49240 SM00342 helix_turn_helix, arabinose operon control protein K04M3_49240 SM01009 AlkA N-terminal domain K04M3_49340 SM00345 helix_turn_helix gluconate operon transcriptional repressor K04M3_49350 SM00382 ATPases associated with a variety of cellular activities K04M3_49400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K04M3_49400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K04M3_49400 SM01049 K04M3_49400 K04M3_49430 SM00448 cheY-homologous receiver domain K04M3_49430 SM00850 LytTr DNA-binding domain K04M3_49440 SM00387 Histidine kinase-like ATPases K04M3_49480 SM00382 ATPases associated with a variety of cellular activities K04M3_49530 SM00387 Histidine kinase-like ATPases K04M3_49530 SM00388 His Kinase A (phosphoacceptor) domain K04M3_49530 SM00448 cheY-homologous receiver domain K04M3_49570 SM00382 ATPases associated with a variety of cellular activities K04M3_49580 SM00382 ATPases associated with a variety of cellular activities K04M3_50530 SM00400 zinc finger K04M3_51040 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain K04M3_51040 SM00437 Bacterial DNA topoisomerase I DNA-binding domain K04M3_51040 SM00493 K04M3_51040 K04M3_51250 SM00382 ATPases associated with a variety of cellular activities K04M3_51540 SM00528 Domain in histone-like proteins of HNS family K04M3_51570 SM00477 DNA/RNA non-specific endonuclease K04M3_51570 SM00892 DNA/RNA non-specific endonuclease K04M3_51620 SM00052 Putative diguanylate phosphodiesterase K04M3_51620 SM00267 diguanylate cyclase K04M3_51970 SM00974 K04M3_51970 K04M3_52090 SM00244 prohibitin homologues K04M3_52100 SM00244 prohibitin homologues K04M3_52210 SM00052 Putative diguanylate phosphodiesterase K04M3_52210 SM00267 diguanylate cyclase K04M3_52430 SM00493 K04M3_52430 K04M3_52520 SM00479 K04M3_52520