locus-tag class description K08M3_00010 PF11638 DnaA N-terminal domain K08M3_00010 PF00308 Bacterial dnaA protein K08M3_00010 PF08299 Bacterial dnaA protein helix-turn-helix K08M3_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain K08M3_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain K08M3_00020 PF02767 DNA polymerase III beta subunit, central domain K08M3_00030 PF02463 RecF/RecN/SMC N terminal domain K08M3_00040 PF18053 DNA gyrase B subunit insert domain K08M3_00040 PF00986 DNA gyrase B subunit, carboxyl terminus K08M3_00040 PF01751 Toprim domain K08M3_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_00040 PF00204 DNA gyrase B K08M3_00070 PF00011 Hsp20/alpha crystallin family K08M3_00080 PF00155 Aminotransferase class I and II K08M3_00090 PF00128 Alpha amylase, catalytic domain K08M3_00100 PF05746 DALR anticodon binding domain K08M3_00100 PF02092 Glycyl-tRNA synthetase beta subunit K08M3_00110 PF02091 Glycyl-tRNA synthetase alpha subunit K08M3_00120 PF01169 Uncharacterized protein family UPF0016 K08M3_00140 PF01206 Sulfurtransferase TusA K08M3_00160 PF03466 LysR substrate binding domain K08M3_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_00170 PF00107 Zinc-binding dehydrogenase K08M3_00170 PF08240 Alcohol dehydrogenase GroES-like domain K08M3_00180 PF02803 Thiolase, C-terminal domain K08M3_00180 PF00108 Thiolase, N-terminal domain K08M3_00190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K08M3_00190 PF00378 Enoyl-CoA hydratase/isomerase K08M3_00190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K08M3_00200 PF09186 Domain of unknown function (DUF1949) K08M3_00200 PF01205 Uncharacterized protein family UPF0029 K08M3_00210 PF02386 Cation transport protein K08M3_00220 PF12724 Flavodoxin domain K08M3_00290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_00290 PF03466 LysR substrate binding domain K08M3_00300 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain K08M3_00300 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain K08M3_00310 PF04380 Membrane fusogenic activity K08M3_00320 PF00873 AcrB/AcrD/AcrF family K08M3_00330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_00340 PF16295 Tetracyclin repressor-like, C-terminal domain K08M3_00340 PF00440 Bacterial regulatory proteins, tetR family K08M3_00350 PF13361 UvrD-like helicase C-terminal domain K08M3_00350 PF00580 UvrD/REP helicase N-terminal domain K08M3_00360 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K08M3_00420 PF13419 Haloacid dehalogenase-like hydrolase K08M3_00430 PF00005 ABC transporter K08M3_00430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_00440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_00460 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_00460 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M3_00480 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K08M3_00480 PF00356 Bacterial regulatory proteins, lacI family K08M3_00490 PF03466 LysR substrate binding domain K08M3_00490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_00500 PF00893 Small Multidrug Resistance protein K08M3_00510 PF00893 Small Multidrug Resistance protein K08M3_00520 PF00920 Dehydratase family K08M3_00530 PF01202 Shikimate kinase K08M3_00540 PF02447 GntP family permease K08M3_00550 PF01081 KDPG and KHG aldolase K08M3_00560 PF01048 Phosphorylase superfamily K08M3_00570 PF03466 LysR substrate binding domain K08M3_00570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_00580 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_00580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M3_00590 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ K08M3_00600 PF01432 Peptidase family M3 K08M3_00610 PF01037 Lrp/AsnC ligand binding domain K08M3_00620 PF00563 EAL domain K08M3_00620 PF00990 Diguanylate cyclase, GGDEF domain K08M3_00620 PF08448 PAS fold K08M3_00630 PF04445 Putative SAM-dependent methyltransferase K08M3_00650 PF00892 EamA-like transporter family K08M3_00660 PF00582 Universal stress protein family K08M3_00670 PF00210 Ferritin-like domain K08M3_00680 PF10625 Universal stress protein B (UspB) K08M3_00700 PF01590 GAF domain K08M3_00700 PF02954 Bacterial regulatory protein, Fis family K08M3_00700 PF00158 Sigma-54 interaction domain K08M3_00750 PF00781 Diacylglycerol kinase catalytic domain K08M3_00810 PF01594 AI-2E family transporter K08M3_00820 PF03707 Bacterial signalling protein N terminal repeat K08M3_00820 PF00990 Diguanylate cyclase, GGDEF domain K08M3_00820 PF00563 EAL domain K08M3_00840 PF02646 RmuC family K08M3_00850 PF01209 ubiE/COQ5 methyltransferase family K08M3_00860 PF02036 SCP-2 sterol transfer family K08M3_00870 PF03109 ABC1 family K08M3_00880 PF02416 mttA/Hcf106 family K08M3_00890 PF02416 mttA/Hcf106 family K08M3_00900 PF00902 Sec-independent protein translocase protein (TatC) K08M3_00910 PF01026 TatD related DNase K08M3_00920 PF00490 Delta-aminolevulinic acid dehydratase K08M3_00930 PF00583 Acetyltransferase (GNAT) family K08M3_00950 PF01612 3'-5' exonuclease K08M3_00950 PF00476 DNA polymerase family A K08M3_00950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K08M3_00950 PF01367 5'-3' exonuclease, C-terminal SAM fold K08M3_00960 PF01926 50S ribosome-binding GTPase K08M3_00970 PF00034 Cytochrome c K08M3_00990 PF04220 Der GTPase activator (YihI) K08M3_01000 PF10675 Protein of unknown function (DUF2489) K08M3_01010 PF06969 HemN C-terminal domain K08M3_01010 PF04055 Radical SAM superfamily K08M3_01020 PF00962 Adenosine/AMP deaminase K08M3_01030 PF03707 Bacterial signalling protein N terminal repeat K08M3_01030 PF00563 EAL domain K08M3_01030 PF00990 Diguanylate cyclase, GGDEF domain K08M3_01040 PF02954 Bacterial regulatory protein, Fis family K08M3_01040 PF00158 Sigma-54 interaction domain K08M3_01040 PF00072 Response regulator receiver domain K08M3_01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_01050 PF00512 His Kinase A (phospho-acceptor) domain K08M3_01050 PF00989 PAS fold K08M3_01070 PF00120 Glutamine synthetase, catalytic domain K08M3_01070 PF03951 Glutamine synthetase, beta-Grasp domain K08M3_01090 PF00308 Bacterial dnaA protein K08M3_01090 PF08299 Bacterial dnaA protein helix-turn-helix K08M3_01110 PF03631 Virulence factor BrkB K08M3_01120 PF02580 D-Tyr-tRNA(Tyr) deacylase K08M3_01130 PF09500 Putative thioesterase (yiiD_Cterm) K08M3_01130 PF00583 Acetyltransferase (GNAT) family K08M3_01150 PF01293 Phosphoenolpyruvate carboxykinase K08M3_01160 PF01430 Hsp33 protein K08M3_01170 PF01479 S4 domain K08M3_01180 PF11356 Type II secretion system protein C K08M3_01190 PF00263 Bacterial type II and III secretion system protein K08M3_01190 PF03958 Bacterial type II/III secretion system short domain K08M3_01200 PF00437 Type II/IV secretion system protein K08M3_01210 PF00482 Type II secretion system (T2SS), protein F K08M3_01220 PF08334 Type II secretion system (T2SS), protein G K08M3_01220 PF07963 Prokaryotic N-terminal methylation motif K08M3_01230 PF12019 Type II transport protein GspH K08M3_01240 PF07963 Prokaryotic N-terminal methylation motif K08M3_01240 PF02501 Type II secretion system (T2SS), protein I K08M3_01250 PF07963 Prokaryotic N-terminal methylation motif K08M3_01250 PF11612 Type II secretion system (T2SS), protein J K08M3_01260 PF03934 Type II secretion system (T2SS), protein K K08M3_01270 PF05134 Type II secretion system (T2SS), protein L K08M3_01270 PF12693 GspL periplasmic domain K08M3_01280 PF04612 Type II secretion system (T2SS), protein M K08M3_01290 PF01203 Type II secretion system (T2SS), protein N K08M3_01300 PF00459 Inositol monophosphatase family K08M3_01310 PF00293 NUDIX domain K08M3_01320 PF01521 Iron-sulphur cluster biosynthesis K08M3_01320 PF01106 NifU-like domain K08M3_01330 PF00156 Phosphoribosyl transferase domain K08M3_01340 PF00561 alpha/beta hydrolase fold K08M3_01360 PF16921 Tex protein YqgF-like domain K08M3_01360 PF09371 Tex-like protein N-terminal domain K08M3_01360 PF17674 HHH domain K08M3_01360 PF00575 S1 RNA binding domain K08M3_01380 PF01272 Transcription elongation factor, GreA/GreB, C-term K08M3_01380 PF03449 Transcription elongation factor, N-terminal K08M3_01400 PF00072 Response regulator receiver domain K08M3_01400 PF00486 Transcriptional regulatory protein, C terminal K08M3_01410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_01410 PF00512 His Kinase A (phospho-acceptor) domain K08M3_01410 PF00672 HAMP domain K08M3_01420 PF00860 Permease family K08M3_01430 PF00270 DEAD/DEAH box helicase K08M3_01430 PF00271 Helicase conserved C-terminal domain K08M3_01430 PF17191 RecG wedge domain K08M3_01440 PF12105 SpoU, rRNA methylase, C-terminal K08M3_01440 PF00588 SpoU rRNA Methylase family K08M3_01450 PF13291 ACT domain K08M3_01450 PF02824 TGS domain K08M3_01450 PF04607 Region found in RelA / SpoT proteins K08M3_01460 PF01192 RNA polymerase Rpb6 K08M3_01470 PF00625 Guanylate kinase K08M3_01500 PF02472 Biopolymer transport protein ExbD/TolR K08M3_01510 PF01618 MotA/TolQ/ExbB proton channel family K08M3_01540 PF00593 TonB dependent receptor K08M3_01540 PF07715 TonB-dependent Receptor Plug Domain K08M3_01550 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_01560 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M3_01560 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_01570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_01580 PF00005 ABC transporter K08M3_01580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_01590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_01590 PF00005 ABC transporter K08M3_01610 PF08340 Domain of unknown function (DUF1732) K08M3_01610 PF03755 YicC-like family, N-terminal region K08M3_01620 PF01138 3' exoribonuclease family, domain 1 K08M3_01620 PF03725 3' exoribonuclease family, domain 2 K08M3_01630 PF00156 Phosphoribosyl transferase domain K08M3_01640 PF03279 Bacterial lipid A biosynthesis acyltransferase K08M3_01650 PF00440 Bacterial regulatory proteins, tetR family K08M3_01660 PF02441 Flavoprotein K08M3_01660 PF04127 DNA / pantothenate metabolism flavoprotein K08M3_01670 PF17200 Single Cache domain 2 K08M3_01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_01670 PF00672 HAMP domain K08M3_01680 PF04002 RadC-like JAB domain K08M3_01690 PF00830 Ribosomal L28 family K08M3_01700 PF00471 Ribosomal protein L33 K08M3_01720 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain K08M3_01720 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain K08M3_01720 PF06827 Zinc finger found in FPG and IleRS K08M3_01730 PF01467 Cytidylyltransferase-like K08M3_01740 PF05686 Glycosyl transferase family 90 K08M3_01750 PF00535 Glycosyl transferase family 2 K08M3_01760 PF00535 Glycosyl transferase family 2 K08M3_01770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K08M3_01780 PF01219 Prokaryotic diacylglycerol kinase K08M3_01800 PF16363 GDP-mannose 4,6 dehydratase K08M3_01810 PF00483 Nucleotidyl transferase K08M3_01820 PF05523 WxcM-like, C-terminal K08M3_01840 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family K08M3_01890 PF00682 HMGL-like K08M3_01890 PF07836 DmpG-like communication domain K08M3_01900 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K08M3_01910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K08M3_01930 PF03279 Bacterial lipid A biosynthesis acyltransferase K08M3_01960 PF01370 NAD dependent epimerase/dehydratase family K08M3_01970 PF06082 Exopolysaccharide biosynthesis protein YbjH K08M3_02020 PF18412 Outer-membrane lipoprotein Wza C-terminal domain K08M3_02020 PF02563 Polysaccharide biosynthesis/export protein K08M3_02020 PF10531 SLBB domain K08M3_02070 PF00534 Glycosyl transferases group 1 K08M3_02070 PF13439 Glycosyltransferase Family 4 K08M3_02090 PF00534 Glycosyl transferases group 1 K08M3_02090 PF13439 Glycosyltransferase Family 4 K08M3_02100 PF13439 Glycosyltransferase Family 4 K08M3_02100 PF00534 Glycosyl transferases group 1 K08M3_02110 PF02397 Bacterial sugar transferase K08M3_02120 PF00753 Metallo-beta-lactamase superfamily K08M3_02120 PF10996 Beta-Casp domain K08M3_02120 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain K08M3_02130 PF00953 Glycosyl transferase family 4 K08M3_02180 PF00535 Glycosyl transferase family 2 K08M3_02190 PF00535 Glycosyl transferase family 2 K08M3_02210 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain K08M3_02210 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain K08M3_02210 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain K08M3_02220 PF01370 NAD dependent epimerase/dehydratase family K08M3_02230 PF00483 Nucleotidyl transferase K08M3_02240 PF00121 Triosephosphate isomerase K08M3_02280 PF08220 DeoR-like helix-turn-helix domain K08M3_02280 PF00455 DeoR C terminal sensor domain K08M3_02290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K08M3_02300 PF06005 Cell division protein ZapB K08M3_02310 PF03737 Aldolase/RraA K08M3_02320 PF01040 UbiA prenyltransferase family K08M3_02380 PF04002 RadC-like JAB domain K08M3_02410 PF00072 Response regulator receiver domain K08M3_02410 PF12431 Transcriptional regulator K08M3_02420 PF17203 Single cache domain 3 K08M3_02420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_02430 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit K08M3_02440 PF00364 Biotin-requiring enzyme K08M3_02440 PF00682 HMGL-like K08M3_02440 PF02436 Conserved carboxylase domain K08M3_02450 PF04277 Oxaloacetate decarboxylase, gamma chain K08M3_02460 PF03390 2-hydroxycarboxylate transporter family K08M3_02470 PF08218 Citrate lyase ligase C-terminal domain K08M3_02480 PF06857 Malonate decarboxylase delta subunit (MdcD) K08M3_02490 PF03328 HpcH/HpaI aldolase/citrate lyase family K08M3_02500 PF04223 Citrate lyase, alpha subunit (CitF) K08M3_02510 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase K08M3_02520 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase K08M3_02550 PF00004 ATPase family associated with various cellular activities (AAA) K08M3_02550 PF07724 AAA domain (Cdc48 subfamily) K08M3_02560 PF00227 Proteasome subunit K08M3_02590 PF00356 Bacterial regulatory proteins, lacI family K08M3_02600 PF18319 PriA DNA helicase Cys-rich region (CRR) domain K08M3_02600 PF18074 Primosomal protein N C-terminal domain K08M3_02600 PF17764 3′ DNA-binding domain (3′BD) K08M3_02600 PF00270 DEAD/DEAH box helicase K08M3_02600 PF00271 Helicase conserved C-terminal domain K08M3_02610 PF01197 Ribosomal protein L31 K08M3_02620 PF00338 Ribosomal protein S10p/S20e K08M3_02630 PF00297 Ribosomal protein L3 K08M3_02640 PF00573 Ribosomal protein L4/L1 family K08M3_02650 PF00276 Ribosomal protein L23 K08M3_02660 PF00181 Ribosomal Proteins L2, RNA binding domain K08M3_02660 PF03947 Ribosomal Proteins L2, C-terminal domain K08M3_02670 PF00203 Ribosomal protein S19 K08M3_02680 PF00237 Ribosomal protein L22p/L17e K08M3_02690 PF07650 KH domain K08M3_02690 PF00189 Ribosomal protein S3, C-terminal domain K08M3_02700 PF00252 Ribosomal protein L16p/L10e K08M3_02710 PF00831 Ribosomal L29 protein K08M3_02720 PF00366 Ribosomal protein S17 K08M3_02730 PF00238 Ribosomal protein L14p/L23e K08M3_02740 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 K08M3_02740 PF00467 KOW motif K08M3_02750 PF00673 ribosomal L5P family C-terminus K08M3_02750 PF00281 Ribosomal protein L5 K08M3_02760 PF00253 Ribosomal protein S14p/S29e K08M3_02770 PF00410 Ribosomal protein S8 K08M3_02780 PF00347 Ribosomal protein L6 K08M3_02790 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast K08M3_02800 PF00333 Ribosomal protein S5, N-terminal domain K08M3_02800 PF03719 Ribosomal protein S5, C-terminal domain K08M3_02810 PF00327 Ribosomal protein L30p/L7e K08M3_02830 PF00344 SecY translocase K08M3_02840 PF00444 Ribosomal protein L36 K08M3_02850 PF00416 Ribosomal protein S13/S18 K08M3_02860 PF00411 Ribosomal protein S11 K08M3_02870 PF01479 S4 domain K08M3_02870 PF00163 Ribosomal protein S4/S9 N-terminal domain K08M3_02880 PF01000 RNA polymerase Rpb3/RpoA insert domain K08M3_02880 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain K08M3_02880 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain K08M3_02890 PF01196 Ribosomal protein L17 K08M3_02910 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K08M3_02910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M3_02930 PF13673 Acetyltransferase (GNAT) domain K08M3_02940 PF00270 DEAD/DEAH box helicase K08M3_02940 PF00271 Helicase conserved C-terminal domain K08M3_02940 PF03880 DbpA RNA binding domain K08M3_02960 PF02872 5'-nucleotidase, C-terminal domain K08M3_02960 PF00149 Calcineurin-like phosphoesterase K08M3_02970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M3_02970 PF10414 Sirohaem synthase dimerisation region K08M3_02970 PF14824 Sirohaem biosynthesis protein central K08M3_02980 PF01507 Phosphoadenosine phosphosulfate reductase family K08M3_02990 PF00009 Elongation factor Tu GTP binding domain K08M3_03000 PF03600 Citrate transporter K08M3_03000 PF02080 TrkA-C domain K08M3_03060 PF00005 ABC transporter K08M3_03080 PF10795 Protein of unknown function (DUF2607) K08M3_03090 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) K08M3_03100 PF06526 Protein of unknown function (DUF1107) K08M3_03110 PF01625 Peptide methionine sulfoxide reductase K08M3_03120 PF17243 POTRA domain TamA domain 1 K08M3_03120 PF01103 Surface antigen K08M3_03130 PF04357 TamB, inner membrane protein subunit of TAM complex K08M3_03140 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like K08M3_03160 PF00719 Inorganic pyrophosphatase K08M3_03170 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain K08M3_03180 PF01225 Mur ligase family, catalytic domain K08M3_03180 PF08245 Mur ligase middle domain K08M3_03180 PF02875 Mur ligase family, glutamate ligase domain K08M3_03190 PF02441 Flavoprotein K08M3_03210 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_03220 PF00005 ABC transporter K08M3_03230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_03230 PF03466 LysR substrate binding domain K08M3_03240 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M3_03270 PF16868 NMT1-like family K08M3_03280 PF02863 Arginine repressor, C-terminal domain K08M3_03280 PF01316 Arginine repressor, DNA binding domain K08M3_03290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain K08M3_03290 PF00056 lactate/malate dehydrogenase, NAD binding domain K08M3_03310 PF00348 Polyprenyl synthetase K08M3_03320 PF00829 Ribosomal prokaryotic L21 protein K08M3_03330 PF01016 Ribosomal L27 protein K08M3_03340 PF01018 GTP1/OBG K08M3_03340 PF01926 50S ribosome-binding GTPase K08M3_03350 PF06738 Putative threonine/serine exporter K08M3_03360 PF12821 Threonine/Serine exporter, ThrE K08M3_03370 PF00186 Dihydrofolate reductase K08M3_03380 PF00149 Calcineurin-like phosphoesterase K08M3_03390 PF04379 ApaG domain K08M3_03400 PF00398 Ribosomal RNA adenine dimethylase K08M3_03410 PF04166 Pyridoxal phosphate biosynthetic protein PdxA K08M3_03420 PF09312 SurA N-terminal domain K08M3_03430 PF04453 LPS transport system D K08M3_03430 PF03968 OstA-like protein K08M3_03440 PF00226 DnaJ domain K08M3_03440 PF05099 Tellurite resistance protein TerB K08M3_03460 PF00694 Aconitase C-terminal domain K08M3_03470 PF00330 Aconitase family (aconitate hydratase) K08M3_03480 PF00180 Isocitrate/isopropylmalate dehydrogenase K08M3_03490 PF00682 HMGL-like K08M3_03490 PF08502 LeuA allosteric (dimerisation) domain K08M3_03510 PF01569 PAP2 superfamily K08M3_03530 PF03466 LysR substrate binding domain K08M3_03530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_03540 PF00501 AMP-binding enzyme K08M3_03550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K08M3_03550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K08M3_03550 PF00205 Thiamine pyrophosphate enzyme, central domain K08M3_03560 PF10369 Small subunit of acetolactate synthase K08M3_03570 PF07694 5TMR of 5TMR-LYT K08M3_03570 PF00990 Diguanylate cyclase, GGDEF domain K08M3_03590 PF00224 Pyruvate kinase, barrel domain K08M3_03590 PF02887 Pyruvate kinase, alpha/beta domain K08M3_03600 PF00455 DeoR C terminal sensor domain K08M3_03600 PF08220 DeoR-like helix-turn-helix domain K08M3_03610 PF01380 SIS domain K08M3_03620 PF00465 Iron-containing alcohol dehydrogenase K08M3_03630 PF02733 Dak1 domain K08M3_03640 PF02734 DAK2 domain K08M3_03650 PF00391 PEP-utilising enzyme, mobile domain K08M3_03650 PF02896 PEP-utilising enzyme, TIM barrel domain K08M3_03650 PF05524 PEP-utilising enzyme, N-terminal K08M3_03660 PF02954 Bacterial regulatory protein, Fis family K08M3_03660 PF00989 PAS fold K08M3_03660 PF00158 Sigma-54 interaction domain K08M3_03670 PF05068 Mannitol repressor K08M3_03680 PF08125 Mannitol dehydrogenase C-terminal domain K08M3_03680 PF01232 Mannitol dehydrogenase Rossmann domain K08M3_03690 PF02378 Phosphotransferase system, EIIC K08M3_03690 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K08M3_03690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M3_03730 PF03180 NLPA lipoprotein K08M3_03750 PF03979 Sigma-70 factor, region 1.1 K08M3_03750 PF04545 Sigma-70, region 4 K08M3_03750 PF04539 Sigma-70 region 3 K08M3_03750 PF00140 Sigma-70 factor, region 1.2 K08M3_03750 PF04546 Sigma-70, non-essential region K08M3_03750 PF04542 Sigma-70 region 2 K08M3_03760 PF01807 CHC2 zinc finger K08M3_03760 PF08275 DNA primase catalytic core, N-terminal domain K08M3_03760 PF10410 DnaB-helicase binding domain of primase K08M3_03760 PF08278 DNA primase DnaG DnaB-binding K08M3_03770 PF09424 Yqey-like protein K08M3_03780 PF01165 Ribosomal protein S21 K08M3_03790 PF00814 Glycoprotease family K08M3_03800 PF00561 alpha/beta hydrolase fold K08M3_03810 PF02660 Glycerol-3-phosphate acyltransferase K08M3_03820 PF02152 Dihydroneopterin aldolase K08M3_03830 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K08M3_03840 PF02673 Bacitracin resistance protein BacA K08M3_03850 PF12627 Probable RNA and SrmB- binding site of polymerase A K08M3_03850 PF01966 HD domain K08M3_03850 PF01743 Poly A polymerase head domain K08M3_03860 PF01471 Putative peptidoglycan binding domain K08M3_03860 PF13401 AAA domain K08M3_03890 PF08239 Bacterial SH3 domain K08M3_03900 PF01384 Phosphate transporter family K08M3_03910 PF01865 Protein of unknown function DUF47 K08M3_03920 PF01928 CYTH domain K08M3_03940 PF02743 Cache domain K08M3_03940 PF00672 HAMP domain K08M3_03940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_03950 PF03710 Glutamate-ammonia ligase adenylyltransferase K08M3_03950 PF08335 GlnD PII-uridylyltransferase K08M3_03960 PF01467 Cytidylyltransferase-like K08M3_03960 PF00294 pfkB family carbohydrate kinase K08M3_03970 PF02321 Outer membrane efflux protein K08M3_03980 PF00293 NUDIX domain K08M3_03990 PF06853 Protein of unknown function (DUF1249) K08M3_04000 PF00149 Calcineurin-like phosphoesterase K08M3_04010 PF05728 Uncharacterised protein family (UPF0227) K08M3_04020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_04020 PF01751 Toprim domain K08M3_04020 PF00986 DNA gyrase B subunit, carboxyl terminus K08M3_04020 PF00204 DNA gyrase B K08M3_04030 PF00521 DNA gyrase/topoisomerase IV, subunit A K08M3_04030 PF03989 DNA gyrase C-terminal domain, beta-propeller K08M3_04040 PF13180 PDZ domain K08M3_04050 PF00595 PDZ domain K08M3_04060 PF06295 Protein of unknown function (DUF1043) K08M3_04070 PF03969 AFG1-like ATPase K08M3_04080 PF00572 Ribosomal protein L13 K08M3_04090 PF00380 Ribosomal protein S9/S16 K08M3_04100 PF00355 Rieske [2Fe-2S] domain K08M3_04100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal K08M3_04110 PF00033 Cytochrome b/b6/petB K08M3_04110 PF00032 Cytochrome b(C-terminal)/b6/petD K08M3_04120 PF02167 Cytochrome C1 family K08M3_04130 PF02798 Glutathione S-transferase, N-terminal domain K08M3_04130 PF00043 Glutathione S-transferase, C-terminal domain K08M3_04140 PF04386 Stringent starvation protein B K08M3_04170 PF04972 BON domain K08M3_04180 PF13580 SIS domain K08M3_04190 PF02021 Uncharacterised protein family UPF0102 K08M3_04200 PF04348 LppC putative lipoprotein K08M3_04210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M3_04220 PF01795 MraW methylase family K08M3_04230 PF04999 Cell division protein FtsL K08M3_04240 PF00905 Penicillin binding protein transpeptidase domain K08M3_04240 PF03717 Penicillin-binding Protein dimerisation domain K08M3_04250 PF08245 Mur ligase middle domain K08M3_04250 PF02875 Mur ligase family, glutamate ligase domain K08M3_04250 PF01225 Mur ligase family, catalytic domain K08M3_04260 PF01225 Mur ligase family, catalytic domain K08M3_04260 PF02875 Mur ligase family, glutamate ligase domain K08M3_04260 PF08245 Mur ligase middle domain K08M3_04270 PF00953 Glycosyl transferase family 4 K08M3_04270 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 K08M3_04280 PF08245 Mur ligase middle domain K08M3_04280 PF02875 Mur ligase family, glutamate ligase domain K08M3_04290 PF01098 Cell cycle protein K08M3_04300 PF04101 Glycosyltransferase family 28 C-terminal domain K08M3_04300 PF03033 Glycosyltransferase family 28 N-terminal domain K08M3_04310 PF08245 Mur ligase middle domain K08M3_04310 PF02875 Mur ligase family, glutamate ligase domain K08M3_04310 PF01225 Mur ligase family, catalytic domain K08M3_04320 PF08478 POTRA domain, FtsQ-type K08M3_04320 PF03799 Cell division protein FtsQ K08M3_04330 PF02491 SHS2 domain inserted in FTSA K08M3_04340 PF00091 Tubulin/FtsZ family, GTPase domain K08M3_04340 PF12327 FtsZ family, C-terminal domain K08M3_04350 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase K08M3_04370 PF07517 SecA DEAD-like domain K08M3_04370 PF02810 SEC-C motif K08M3_04370 PF07516 SecA Wing and Scaffold domain K08M3_04370 PF01043 SecA preprotein cross-linking domain K08M3_04380 PF00293 NUDIX domain K08M3_04390 PF01113 Dihydrodipicolinate reductase, N-terminus K08M3_04390 PF05173 Dihydrodipicolinate reductase, C-terminus K08M3_04400 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain K08M3_04400 PF00117 Glutamine amidotransferase class-I K08M3_04410 PF02142 MGS-like domain K08M3_04410 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K08M3_04410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K08M3_04440 PF01925 Sulfite exporter TauE/SafE K08M3_04450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_04450 PF03466 LysR substrate binding domain K08M3_04460 PF03458 UPF0126 domain K08M3_04470 PF01497 Periplasmic binding protein K08M3_04480 PF17113 Regulatory signalling modulator protein AmpE K08M3_04480 PF03186 CobD/Cbib protein K08M3_04490 PF01048 Phosphorylase superfamily K08M3_04510 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K08M3_04510 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_04520 PF01493 GXGXG motif K08M3_04520 PF01645 Conserved region in glutamate synthase K08M3_04520 PF04898 Glutamate synthase central domain K08M3_04520 PF00310 Glutamine amidotransferases class-II K08M3_04530 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_04530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K08M3_04540 PF01645 Conserved region in glutamate synthase K08M3_04540 PF01493 GXGXG motif K08M3_04540 PF00310 Glutamine amidotransferases class-II K08M3_04540 PF04898 Glutamate synthase central domain K08M3_04550 PF16199 Radical_SAM C-terminal domain K08M3_04550 PF04055 Radical SAM superfamily K08M3_04560 PF00563 EAL domain K08M3_04560 PF00360 Phytochrome region K08M3_04560 PF01590 GAF domain K08M3_04560 PF00990 Diguanylate cyclase, GGDEF domain K08M3_04570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_04570 PF00989 PAS fold K08M3_04570 PF00072 Response regulator receiver domain K08M3_04570 PF01627 Hpt domain K08M3_04570 PF18415 Histidine kinase receptor ArcB trans-membrane domain K08M3_04570 PF00512 His Kinase A (phospho-acceptor) domain K08M3_04590 PF00486 Transcriptional regulatory protein, C terminal K08M3_04590 PF00072 Response regulator receiver domain K08M3_04610 PF03737 Aldolase/RraA K08M3_04630 PF00742 Homoserine dehydrogenase K08M3_04630 PF13840 ACT domain K08M3_04630 PF03447 Homoserine dehydrogenase, NAD binding domain K08M3_04630 PF00696 Amino acid kinase family K08M3_04630 PF01842 ACT domain K08M3_04640 PF08544 GHMP kinases C terminal K08M3_04640 PF00288 GHMP kinases N terminal domain K08M3_04650 PF14821 Threonine synthase N terminus K08M3_04650 PF00291 Pyridoxal-phosphate dependent enzyme K08M3_04670 PF01228 Glycine radical K08M3_04680 PF01261 Xylose isomerase-like TIM barrel K08M3_04690 PF03167 Uracil DNA glycosylase superfamily K08M3_04720 PF01235 Sodium:alanine symporter family K08M3_04730 PF03883 Peroxide stress protein YaaA K08M3_04740 PF00271 Helicase conserved C-terminal domain K08M3_04740 PF00270 DEAD/DEAH box helicase K08M3_04750 PF05175 Methyltransferase small domain K08M3_04760 PF05525 Branched-chain amino acid transport protein K08M3_04770 PF00258 Flavodoxin K08M3_04780 PF02899 Phage integrase, N-terminal SAM-like domain K08M3_04780 PF00589 Phage integrase family K08M3_04790 PF13098 Thioredoxin-like domain K08M3_04790 PF10411 Disulfide bond isomerase protein N-terminus K08M3_04800 PF02272 DHHA1 domain K08M3_04800 PF01368 DHH family K08M3_04800 PF17768 RecJ OB domain K08M3_04810 PF00472 RF-1 domain K08M3_04810 PF03462 PCRF domain K08M3_04820 PF00152 tRNA synthetases class II (D, K and N) K08M3_04820 PF01336 OB-fold nucleic acid binding domain K08M3_04830 PF02954 Bacterial regulatory protein, Fis family K08M3_04830 PF00072 Response regulator receiver domain K08M3_04830 PF00158 Sigma-54 interaction domain K08M3_04860 PF00248 Aldo/keto reductase family K08M3_04880 PF02976 DNA mismatch repair enzyme MutH K08M3_04890 PF00293 NUDIX domain K08M3_04900 PF02896 PEP-utilising enzyme, TIM barrel domain K08M3_04900 PF00391 PEP-utilising enzyme, mobile domain K08M3_04900 PF01590 GAF domain K08M3_04900 PF05524 PEP-utilising enzyme, N-terminal K08M3_04910 PF01925 Sulfite exporter TauE/SafE K08M3_04930 PF00303 Thymidylate synthase K08M3_04950 PF02690 Na+/Pi-cotransporter K08M3_04960 PF03466 LysR substrate binding domain K08M3_04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_04970 PF01022 Bacterial regulatory protein, arsR family K08M3_04980 PF01649 Ribosomal protein S20 K08M3_04990 PF03023 Lipid II flippase MurJ K08M3_05000 PF06574 FAD synthetase K08M3_05000 PF01687 Riboflavin kinase K08M3_05010 PF08264 Anticodon-binding domain of tRNA K08M3_05010 PF00133 tRNA synthetases class I (I, L, M and V) K08M3_05010 PF06827 Zinc finger found in FPG and IleRS K08M3_05020 PF01252 Signal peptidase (SPase) II K08M3_05030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M3_05040 PF02401 LytB protein K08M3_05060 PF00072 Response regulator receiver domain K08M3_05060 PF04397 LytTr DNA-binding domain K08M3_05070 PF07694 5TMR of 5TMR-LYT K08M3_05070 PF06580 Histidine kinase K08M3_05080 PF02554 Carbon starvation protein CstA K08M3_05110 PF01380 SIS domain K08M3_05120 PF03702 Anhydro-N-acetylmuramic acid kinase K08M3_05130 PF00933 Glycosyl hydrolase family 3 N terminal domain K08M3_05140 PF00793 DAHP synthetase I family K08M3_05150 PF01817 Chorismate mutase type II K08M3_05150 PF02153 Prephenate dehydrogenase K08M3_05160 PF01551 Peptidase family M23 K08M3_05160 PF04225 Opacity-associated protein A LysM-like domain K08M3_05170 PF07238 PilZ domain K08M3_05180 PF12848 ABC transporter K08M3_05180 PF00005 ABC transporter K08M3_05190 PF01464 Transglycosylase SLT domain K08M3_05190 PF14718 Soluble lytic murein transglycosylase L domain K08M3_05200 PF01371 Trp repressor protein K08M3_05210 PF01931 Protein of unknown function DUF84 K08M3_05220 PF01817 Chorismate mutase type II K08M3_05220 PF00800 Prephenate dehydratase K08M3_05230 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K08M3_05240 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_05240 PF01464 Transglycosylase SLT domain K08M3_05250 PF13525 Outer membrane lipoprotein K08M3_05260 PF00849 RNA pseudouridylate synthase K08M3_05260 PF01479 S4 domain K08M3_05280 PF10431 C-terminal, D2-small domain, of ClpB protein K08M3_05280 PF02861 Clp amino terminal domain, pathogenicity island component K08M3_05280 PF17871 AAA lid domain K08M3_05280 PF07724 AAA domain (Cdc48 subfamily) K08M3_05280 PF00004 ATPase family associated with various cellular activities (AAA) K08M3_05390 PF03411 Penicillin-insensitive murein endopeptidase K08M3_05410 PF12838 4Fe-4S dicluster domain K08M3_05430 PF04381 Putative exonuclease, RdgC K08M3_05440 PF00486 Transcriptional regulatory protein, C terminal K08M3_05440 PF00072 Response regulator receiver domain K08M3_05450 PF11808 Phosphate regulon sensor protein PhoR K08M3_05450 PF00989 PAS fold K08M3_05450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_05450 PF00512 His Kinase A (phospho-acceptor) domain K08M3_05460 PF12849 PBP superfamily domain K08M3_05470 PF02541 Ppx/GppA phosphatase family K08M3_05480 PF17941 Polyphosphate kinase C-terminal domain 1 K08M3_05480 PF13090 Polyphosphate kinase C-terminal domain 2 K08M3_05480 PF13089 Polyphosphate kinase N-terminal domain K08M3_05480 PF02503 Polyphosphate kinase middle domain K08M3_05490 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_05500 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_05510 PF00005 ABC transporter K08M3_05520 PF01895 PhoU domain K08M3_05530 PF03976 Polyphosphate kinase 2 (PPK2) K08M3_05540 PF03932 CutC family K08M3_05550 PF00578 AhpC/TSA family K08M3_05550 PF10417 C-terminal domain of 1-Cys peroxiredoxin K08M3_05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_05560 PF03466 LysR substrate binding domain K08M3_05570 PF01274 Malate synthase K08M3_05580 PF00463 Isocitrate lyase family K08M3_05590 PF00571 CBS domain K08M3_05610 PF02547 Queuosine biosynthesis protein K08M3_05620 PF01702 Queuine tRNA-ribosyltransferase K08M3_05630 PF02699 Preprotein translocase subunit K08M3_05640 PF07549 SecD/SecF GG Motif K08M3_05640 PF02355 Protein export membrane protein K08M3_05640 PF13721 SecD export protein N-terminal TM region K08M3_05650 PF02355 Protein export membrane protein K08M3_05650 PF07549 SecD/SecF GG Motif K08M3_05680 PF00459 Inositol monophosphatase family K08M3_05690 PF00588 SpoU rRNA Methylase family K08M3_05700 PF02082 Transcriptional regulator K08M3_05710 PF00266 Aminotransferase class-V K08M3_05720 PF01592 NifU-like N terminal domain K08M3_05730 PF01521 Iron-sulphur cluster biosynthesis K08M3_05740 PF00226 DnaJ domain K08M3_05740 PF07743 HSCB C-terminal oligomerisation domain K08M3_05750 PF00012 Hsp70 protein K08M3_05760 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M3_05770 PF04384 Iron-sulphur cluster assembly K08M3_05780 PF00883 Cytosol aminopeptidase family, catalytic domain K08M3_05780 PF12404 Peptidase K08M3_05790 PF00334 Nucleoside diphosphate kinase K08M3_05800 PF04055 Radical SAM superfamily K08M3_05810 PF13464 Domain of unknown function (DUF4115) K08M3_05820 PF04551 GcpE protein K08M3_05830 PF13393 Histidyl-tRNA synthetase K08M3_05830 PF03129 Anticodon binding domain K08M3_05840 PF09976 Tetratricopeptide repeat-like domain K08M3_05850 PF13360 PQQ-like domain K08M3_05860 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal K08M3_05860 PF01926 50S ribosome-binding GTPase K08M3_05890 PF02601 Exonuclease VII, large subunit K08M3_05890 PF13742 OB-fold nucleic acid binding domain K08M3_05900 PF00478 IMP dehydrogenase / GMP reductase domain K08M3_05900 PF00571 CBS domain K08M3_05910 PF02540 NAD synthase K08M3_05910 PF00958 GMP synthase C terminal domain K08M3_05910 PF00117 Glutamine amidotransferase class-I K08M3_05920 PF13356 Arm DNA-binding domain K08M3_05920 PF00589 Phage integrase family K08M3_06060 PF03553 Na+/H+ antiporter family K08M3_06070 PF00704 Glycosyl hydrolases family 18 K08M3_06070 PF06483 Chitinase C K08M3_06080 PF01184 GPR1/FUN34/yaaH family K08M3_06090 PF01235 Sodium:alanine symporter family K08M3_06100 PF01266 FAD dependent oxidoreductase K08M3_06120 PF01053 Cys/Met metabolism PLP-dependent enzyme K08M3_06130 PF00202 Aminotransferase class-III K08M3_06170 PF00583 Acetyltransferase (GNAT) family K08M3_06170 PF00795 Carbon-nitrogen hydrolase K08M3_06180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_06180 PF03466 LysR substrate binding domain K08M3_06220 PF01668 SmpB protein K08M3_06230 PF03364 Polyketide cyclase / dehydrase and lipid transport K08M3_06240 PF03658 RnfH family Ubiquitin K08M3_06250 PF04355 SmpA / OmlA family K08M3_06270 PF02463 RecF/RecN/SMC N terminal domain K08M3_06290 PF01513 ATP-NAD kinase K08M3_06300 PF01025 GrpE K08M3_06320 PF00375 Sodium:dicarboxylate symporter family K08M3_06330 PF00012 Hsp70 protein K08M3_06340 PF00684 DnaJ central domain K08M3_06340 PF01556 DnaJ C terminal domain K08M3_06340 PF00226 DnaJ domain K08M3_06350 PF07963 Prokaryotic N-terminal methylation motif K08M3_06350 PF00114 Pilin (bacterial filament) K08M3_06400 PF03806 AbgT putative transporter family K08M3_06410 PF14437 MafB19-like deaminase K08M3_06420 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_06420 PF01464 Transglycosylase SLT domain K08M3_06430 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal K08M3_06430 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain K08M3_06430 PF02769 AIR synthase related protein, C-terminal domain K08M3_06460 PF00593 TonB dependent receptor K08M3_06460 PF07715 TonB-dependent Receptor Plug Domain K08M3_06490 PF07687 Peptidase dimerisation domain K08M3_06490 PF01546 Peptidase family M20/M25/M40 K08M3_06500 PF00860 Permease family K08M3_06510 PF00156 Phosphoribosyl transferase domain K08M3_06530 PF07417 Sigma factor-binding transcriptional regulator Crl K08M3_06540 PF01472 PUA domain K08M3_06540 PF00696 Amino acid kinase family K08M3_06550 PF00171 Aldehyde dehydrogenase family K08M3_06560 PF03477 ATP cone domain K08M3_06570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K08M3_06570 PF01872 RibD C-terminal domain K08M3_06580 PF00677 Lumazine binding domain K08M3_06590 PF00925 GTP cyclohydrolase II K08M3_06590 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K08M3_06600 PF00885 6,7-dimethyl-8-ribityllumazine synthase K08M3_06610 PF01029 NusB family K08M3_06620 PF00586 AIR synthase related protein, N-terminal domain K08M3_06620 PF02769 AIR synthase related protein, C-terminal domain K08M3_06630 PF04608 Phosphatidylglycerophosphatase A K08M3_06640 PF02780 Transketolase, C-terminal domain K08M3_06640 PF02779 Transketolase, pyrimidine binding domain K08M3_06640 PF13292 1-deoxy-D-xylulose-5-phosphate synthase K08M3_06650 PF00348 Polyprenyl synthetase K08M3_06660 PF02609 Exonuclease VII small subunit K08M3_06670 PF01618 MotA/TolQ/ExbB proton channel family K08M3_06680 PF13677 Membrane MotB of proton-channel complex MotA/MotB K08M3_06680 PF00691 OmpA family K08M3_06690 PF02568 Thiamine biosynthesis protein (ThiI) K08M3_06690 PF02926 THUMP domain K08M3_06710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_06710 PF03466 LysR substrate binding domain K08M3_06730 PF04241 Protein of unknown function (DUF423) K08M3_06740 PF18125 RlmM ferredoxin-like domain K08M3_06740 PF01728 FtsJ-like methyltransferase K08M3_06750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K08M3_06750 PF01367 5'-3' exonuclease, C-terminal SAM fold K08M3_06760 PF11892 Domain of unknown function (DUF3412) K08M3_06760 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases K08M3_06760 PF03641 Possible lysine decarboxylase K08M3_06770 PF00990 Diguanylate cyclase, GGDEF domain K08M3_06770 PF00072 Response regulator receiver domain K08M3_06790 PF14489 QueF-like protein K08M3_06790 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term K08M3_06800 PF07348 Syd protein (SUKH-2) K08M3_06810 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) K08M3_06820 PF03180 NLPA lipoprotein K08M3_06830 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_06840 PF00005 ABC transporter K08M3_06840 PF09383 NIL domain K08M3_06860 PF00356 Bacterial regulatory proteins, lacI family K08M3_06870 PF02378 Phosphotransferase system, EIIC K08M3_06870 PF00367 phosphotransferase system, EIIB K08M3_06880 PF00128 Alpha amylase, catalytic domain K08M3_06880 PF16657 Maltogenic Amylase, C-terminal domain K08M3_06910 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) K08M3_06910 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 K08M3_06920 PF00464 Serine hydroxymethyltransferase K08M3_06930 PF04055 Radical SAM superfamily K08M3_06930 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family K08M3_06940 PF03099 Biotin/lipoate A/B protein ligase family K08M3_06950 PF04359 Protein of unknown function (DUF493) K08M3_06960 PF00768 D-alanyl-D-alanine carboxypeptidase K08M3_06960 PF07943 Penicillin-binding protein 5, C-terminal domain K08M3_06970 PF03330 Lytic transglycolase K08M3_06970 PF05036 Sporulation related domain K08M3_06980 PF01098 Cell cycle protein K08M3_06990 PF03717 Penicillin-binding Protein dimerisation domain K08M3_06990 PF00905 Penicillin binding protein transpeptidase domain K08M3_07000 PF02590 Predicted SPOUT methyltransferase K08M3_07020 PF06144 DNA polymerase III, delta subunit K08M3_07020 PF14840 Processivity clamp loader gamma complex DNA pol III C-term K08M3_07030 PF04390 Lipopolysaccharide-assembly K08M3_07040 PF08264 Anticodon-binding domain of tRNA K08M3_07040 PF00133 tRNA synthetases class I (I, L, M and V) K08M3_07040 PF13603 Leucyl-tRNA synthetase, Domain 2 K08M3_07050 PF07295 Zinc-ribbon containing domain K08M3_07060 PF00795 Carbon-nitrogen hydrolase K08M3_07070 PF03471 Transporter associated domain K08M3_07070 PF00571 CBS domain K08M3_07080 PF02130 Uncharacterized protein family UPF0054 K08M3_07090 PF02562 PhoH-like protein K08M3_07100 PF01938 TRAM domain K08M3_07100 PF04055 Radical SAM superfamily K08M3_07100 PF00919 Uncharacterized protein family UPF0004 K08M3_07110 PF01494 FAD binding domain K08M3_07320 PF01926 50S ribosome-binding GTPase K08M3_07320 PF06071 Protein of unknown function (DUF933) K08M3_07330 PF01195 Peptidyl-tRNA hydrolase K08M3_07340 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase K08M3_07340 PF14572 Phosphoribosyl synthetase-associated domain K08M3_07350 PF08544 GHMP kinases C terminal K08M3_07350 PF00288 GHMP kinases N terminal domain K08M3_07360 PF03550 Outer membrane lipoprotein LolB K08M3_07370 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain K08M3_07370 PF01488 Shikimate / quinate 5-dehydrogenase K08M3_07370 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain K08M3_07380 PF03462 PCRF domain K08M3_07380 PF00472 RF-1 domain K08M3_07390 PF13847 Methyltransferase domain K08M3_07390 PF17827 PrmC N-terminal domain K08M3_07400 PF04247 Invasion gene expression up-regulator, SirB K08M3_07410 PF13369 Transglutaminase-like superfamily K08M3_07420 PF00793 DAHP synthetase I family K08M3_07430 PF00149 Calcineurin-like phosphoesterase K08M3_07430 PF02872 5'-nucleotidase, C-terminal domain K08M3_07440 PF04073 Aminoacyl-tRNA editing domain K08M3_07450 PF00849 RNA pseudouridylate synthase K08M3_07450 PF01479 S4 domain K08M3_07460 PF01713 Smr domain K08M3_07510 PF00728 Glycosyl hydrolase family 20, catalytic domain K08M3_07510 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain K08M3_07510 PF02838 Glycosyl hydrolase family 20, domain 2 K08M3_07510 PF03173 Putative carbohydrate binding domain K08M3_07540 PF00403 Heavy-metal-associated domain K08M3_07550 PF13609 Gram-negative porin K08M3_07560 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K08M3_07570 PF00749 tRNA synthetases class I (E and Q), catalytic domain K08M3_07580 PF00691 OmpA family K08M3_07580 PF01389 OmpA-like transmembrane domain K08M3_07670 PF00072 Response regulator receiver domain K08M3_07670 PF01584 CheW-like domain K08M3_07680 PF01739 CheR methyltransferase, SAM binding domain K08M3_07680 PF03705 CheR methyltransferase, all-alpha domain K08M3_07690 PF00460 Flagella basal body rod protein K08M3_07700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_07700 PF00460 Flagella basal body rod protein K08M3_07710 PF13861 FlgD Tudor-like domain K08M3_07710 PF13860 FlgD Ig-like domain K08M3_07710 PF03963 Flagellar hook capping protein - N-terminal region K08M3_07720 PF00460 Flagella basal body rod protein K08M3_07720 PF07559 Flagellar basal body protein FlaE K08M3_07720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_07730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_07730 PF00460 Flagella basal body rod protein K08M3_07740 PF00460 Flagella basal body rod protein K08M3_07740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_07750 PF02107 Flagellar L-ring protein K08M3_07760 PF02119 Flagellar P-ring protein K08M3_07770 PF10135 Rod binding protein K08M3_07770 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K08M3_07780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_07780 PF07196 Flagellin hook IN motif K08M3_07790 PF00669 Bacterial flagellin N-terminal helical region K08M3_07800 PF00700 Bacterial flagellin C-terminal helical region K08M3_07800 PF07196 Flagellin hook IN motif K08M3_07800 PF00669 Bacterial flagellin N-terminal helical region K08M3_07810 PF07196 Flagellin hook IN motif K08M3_07810 PF00669 Bacterial flagellin N-terminal helical region K08M3_07810 PF00700 Bacterial flagellin C-terminal helical region K08M3_07820 PF07196 Flagellin hook IN motif K08M3_07820 PF00700 Bacterial flagellin C-terminal helical region K08M3_07820 PF00669 Bacterial flagellin N-terminal helical region K08M3_07830 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K08M3_07840 PF02896 PEP-utilising enzyme, TIM barrel domain K08M3_07840 PF05524 PEP-utilising enzyme, N-terminal K08M3_07840 PF00391 PEP-utilising enzyme, mobile domain K08M3_07860 PF00381 PTS HPr component phosphorylation site K08M3_07870 PF00291 Pyridoxal-phosphate dependent enzyme K08M3_07890 PF04354 ZipA, C-terminal FtsZ-binding domain K08M3_07900 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K08M3_07900 PF00533 BRCA1 C Terminus (BRCT) domain K08M3_07900 PF01653 NAD-dependent DNA ligase adenylation domain K08M3_07900 PF03120 NAD-dependent DNA ligase OB-fold domain K08M3_07900 PF12826 Helix-hairpin-helix motif K08M3_07910 PF03573 outer membrane porin, OprD family K08M3_07950 PF01145 SPFH domain / Band 7 family K08M3_07950 PF16200 C-terminal region of band_7 K08M3_07960 PF11658 Cellulose biosynthesis protein BcsG K08M3_07980 PF10995 Cellulose biosynthesis GIL K08M3_08000 PF06564 Cellulose biosynthesis protein BcsQ K08M3_08010 PF07238 PilZ domain K08M3_08010 PF00535 Glycosyl transferase family 2 K08M3_08010 PF03552 Cellulose synthase K08M3_08020 PF03170 Bacterial cellulose synthase subunit K08M3_08030 PF01270 Glycosyl hydrolases family 8 K08M3_08040 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) K08M3_08050 PF00085 Thioredoxin K08M3_08060 PF00106 short chain dehydrogenase K08M3_08070 PF08338 Domain of unknown function (DUF1731) K08M3_08070 PF01370 NAD dependent epimerase/dehydratase family K08M3_08080 PF07556 Protein of unknown function (DUF1538) K08M3_08090 PF07556 Protein of unknown function (DUF1538) K08M3_08130 PF12850 Calcineurin-like phosphoesterase superfamily domain K08M3_08160 PF17323 Trans-membrane regulatory protein ToxS K08M3_08170 PF00486 Transcriptional regulatory protein, C terminal K08M3_08180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_08180 PF00183 Hsp90 protein K08M3_08190 PF05191 Adenylate kinase, active site lid K08M3_08200 PF00762 Ferrochelatase K08M3_08210 PF00854 POT family K08M3_08220 PF02357 Transcription termination factor nusG K08M3_08230 PF13537 Glutamine amidotransferase domain K08M3_08230 PF00733 Asparagine synthase K08M3_08240 PF00999 Sodium/hydrogen exchanger family K08M3_08240 PF02254 TrkA-N domain K08M3_08250 PF01047 MarR family K08M3_08250 PF00480 ROK family K08M3_08260 PF01979 Amidohydrolase family K08M3_08270 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K08M3_08270 PF00367 phosphotransferase system, EIIB K08M3_08270 PF02378 Phosphotransferase system, EIIC K08M3_08280 PF00749 tRNA synthetases class I (E and Q), catalytic domain K08M3_08280 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain K08M3_08290 PF01475 Ferric uptake regulator family K08M3_08310 PF00258 Flavodoxin K08M3_08330 PF12697 Alpha/beta hydrolase family K08M3_08340 PF03925 SeqA protein C-terminal domain K08M3_08340 PF17206 SeqA protein N-terminal domain K08M3_08350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K08M3_08350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K08M3_08350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K08M3_08350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K08M3_08370 PF01784 NIF3 (NGG1p interacting factor 3) K08M3_08380 PF00285 Citrate synthase, C-terminal domain K08M3_08390 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K08M3_08400 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K08M3_08410 PF00890 FAD binding domain K08M3_08410 PF02910 Fumarate reductase flavoprotein C-term K08M3_08420 PF13085 2Fe-2S iron-sulfur cluster binding domain K08M3_08430 PF02779 Transketolase, pyrimidine binding domain K08M3_08430 PF16078 2-oxoglutarate dehydrogenase N-terminus K08M3_08430 PF16870 2-oxoglutarate dehydrogenase C-terminal K08M3_08430 PF00676 Dehydrogenase E1 component K08M3_08440 PF02817 e3 binding domain K08M3_08440 PF00364 Biotin-requiring enzyme K08M3_08440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K08M3_08450 PF08442 ATP-grasp domain K08M3_08450 PF00549 CoA-ligase K08M3_08460 PF00549 CoA-ligase K08M3_08460 PF02629 CoA binding domain K08M3_08470 PF00950 ABC 3 transport family K08M3_08480 PF00005 ABC transporter K08M3_08490 PF01297 Zinc-uptake complex component A periplasmic K08M3_08500 PF12833 Helix-turn-helix domain K08M3_08500 PF02311 AraC-like ligand binding domain K08M3_08510 PF04023 FeoA domain K08M3_08520 PF02421 Ferrous iron transport protein B K08M3_08520 PF07664 Ferrous iron transport protein B C terminus K08M3_08520 PF07670 Nucleoside recognition K08M3_08520 PF17910 FeoB cytosolic helical domain K08M3_08560 PF03485 Arginyl tRNA synthetase N terminal domain K08M3_08560 PF05746 DALR anticodon binding domain K08M3_08560 PF00750 tRNA synthetases class I (R) K08M3_08570 PF06185 YecM protein K08M3_08590 PF00089 Trypsin K08M3_08600 PF01842 ACT domain K08M3_08600 PF00551 Formyl transferase K08M3_08610 PF13307 Helicase C-terminal domain K08M3_08610 PF04851 Type III restriction enzyme, res subunit K08M3_08620 PF00814 Glycoprotease family K08M3_08640 PF03843 Outer membrane lipoprotein Slp family K08M3_08650 PF00561 alpha/beta hydrolase fold K08M3_08660 PF13193 AMP-binding enzyme C-terminal domain K08M3_08660 PF00501 AMP-binding enzyme K08M3_08670 PF00570 HRDC domain K08M3_08670 PF01612 3'-5' exonuclease K08M3_08680 PF03776 Septum formation topological specificity factor MinE K08M3_08690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K08M3_08700 PF05209 Septum formation inhibitor MinC, N-terminal domain K08M3_08700 PF03775 Septum formation inhibitor MinC, C-terminal domain K08M3_08710 PF05166 YcgL domain K08M3_08720 PF13406 Transglycosylase SLT domain K08M3_08730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_08730 PF03466 LysR substrate binding domain K08M3_08740 PF07662 Na+ dependent nucleoside transporter C-terminus K08M3_08740 PF01773 Na+ dependent nucleoside transporter N-terminus K08M3_08740 PF07670 Nucleoside recognition K08M3_08750 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain K08M3_08750 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain K08M3_08770 PF01209 ubiE/COQ5 methyltransferase family K08M3_08780 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M3_08780 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M3_08800 PF07977 FabA-like domain K08M3_08810 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M3_08810 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M3_08860 PF00221 Aromatic amino acid lyase K08M3_08870 PF00535 Glycosyl transferase family 2 K08M3_08880 PF07977 FabA-like domain K08M3_08910 PF00550 Phosphopantetheine attachment site K08M3_08920 PF00550 Phosphopantetheine attachment site K08M3_08970 PF04820 Tryptophan halogenase K08M3_08990 PF00270 DEAD/DEAH box helicase K08M3_08990 PF00271 Helicase conserved C-terminal domain K08M3_09000 PF02254 TrkA-N domain K08M3_09000 PF02080 TrkA-C domain K08M3_09010 PF02386 Cation transport protein K08M3_09050 PF02696 Uncharacterized ACR, YdiU/UPF0061 family K08M3_09060 PF03480 Bacterial extracellular solute-binding protein, family 7 K08M3_09070 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K08M3_09080 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K08M3_09100 PF00072 Response regulator receiver domain K08M3_09100 PF02954 Bacterial regulatory protein, Fis family K08M3_09100 PF00158 Sigma-54 interaction domain K08M3_09110 PF02743 Cache domain K08M3_09110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_09110 PF00512 His Kinase A (phospho-acceptor) domain K08M3_09120 PF05697 Bacterial trigger factor protein (TF) K08M3_09120 PF05698 Bacterial trigger factor protein (TF) C-terminus K08M3_09120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M3_09130 PF00574 Clp protease K08M3_09140 PF07724 AAA domain (Cdc48 subfamily) K08M3_09140 PF10431 C-terminal, D2-small domain, of ClpB protein K08M3_09140 PF06689 ClpX C4-type zinc finger K08M3_09150 PF00004 ATPase family associated with various cellular activities (AAA) K08M3_09150 PF05362 Lon protease (S16) C-terminal proteolytic domain K08M3_09150 PF02190 ATP-dependent protease La (LON) substrate-binding domain K08M3_09160 PF00216 Bacterial DNA-binding protein K08M3_09170 PF13145 PPIC-type PPIASE domain K08M3_09210 PF13286 Phosphohydrolase-associated domain K08M3_09210 PF01966 HD domain K08M3_09230 PF00155 Aminotransferase class I and II K08M3_09240 PF00425 chorismate binding enzyme K08M3_09250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K08M3_09250 PF16582 Middle domain of thiamine pyrophosphate K08M3_09250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K08M3_09260 PF12697 Alpha/beta hydrolase family K08M3_09270 PF00378 Enoyl-CoA hydratase/isomerase K08M3_09280 PF13378 Enolase C-terminal domain-like K08M3_09290 PF00501 AMP-binding enzyme K08M3_09290 PF13193 AMP-binding enzyme C-terminal domain K08M3_09310 PF03601 Conserved hypothetical protein 698 K08M3_09320 PF07690 Major Facilitator Superfamily K08M3_09410 PF00529 HlyD membrane-fusion protein of T1SS K08M3_09410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_09420 PF00873 AcrB/AcrD/AcrF family K08M3_09450 PF00291 Pyridoxal-phosphate dependent enzyme K08M3_09460 PF01037 Lrp/AsnC ligand binding domain K08M3_09460 PF13404 AsnC-type helix-turn-helix domain K08M3_09490 PF09619 Type III secretion system lipoprotein chaperone (YscW) K08M3_09500 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K08M3_09520 PF00990 Diguanylate cyclase, GGDEF domain K08M3_09520 PF08448 PAS fold K08M3_09530 PF08032 RNA 2'-O ribose methyltransferase substrate binding K08M3_09530 PF00588 SpoU rRNA Methylase family K08M3_09540 PF00571 CBS domain K08M3_09540 PF00478 IMP dehydrogenase / GMP reductase domain K08M3_09550 PF00403 Heavy-metal-associated domain K08M3_09560 PF01048 Phosphorylase superfamily K08M3_09580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_09580 PF00672 HAMP domain K08M3_09590 PF01230 HIT domain K08M3_09620 PF13036 Peptidoglycan-synthase activator LpoB K08M3_09620 PF08139 Prokaryotic membrane lipoprotein lipid attachment site K08M3_09640 PF05728 Uncharacterised protein family (UPF0227) K08M3_09650 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_09680 PF03461 TRCF domain K08M3_09680 PF00271 Helicase conserved C-terminal domain K08M3_09680 PF00270 DEAD/DEAH box helicase K08M3_09680 PF02559 CarD-like/TRCF domain K08M3_09680 PF17757 UvrB interaction domain K08M3_09700 PF12704 MacB-like periplasmic core domain K08M3_09700 PF02687 FtsX-like permease family K08M3_09710 PF00005 ABC transporter K08M3_09720 PF02687 FtsX-like permease family K08M3_09720 PF12704 MacB-like periplasmic core domain K08M3_09740 PF03772 Competence protein K08M3_09740 PF13567 Domain of unknown function (DUF4131) K08M3_09740 PF00753 Metallo-beta-lactamase superfamily K08M3_09750 PF00664 ABC transporter transmembrane region K08M3_09750 PF00005 ABC transporter K08M3_09760 PF02606 Tetraacyldisaccharide-1-P 4'-kinase K08M3_09770 PF03966 Trm112p-like protein K08M3_09780 PF02348 Cytidylyltransferase K08M3_09790 PF04293 SpoVR like protein K08M3_09800 PF04285 Protein of unknown function (DUF444) K08M3_09810 PF08298 PrkA AAA domain K08M3_09810 PF06798 PrkA serine protein kinase C-terminal domain K08M3_09820 PF03887 YfbU domain K08M3_09840 PF04055 Radical SAM superfamily K08M3_09860 PF01228 Glycine radical K08M3_09860 PF02901 Pyruvate formate lyase-like K08M3_09890 PF00005 ABC transporter K08M3_09900 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_09910 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_09920 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_09940 PF03372 Endonuclease/Exonuclease/phosphatase family K08M3_09950 PF10689 Protein of unknown function (DUF2496) K08M3_09960 PF07445 Primosomal replication protein priC K08M3_09970 PF01925 Sulfite exporter TauE/SafE K08M3_09980 PF06733 DEAD_2 K08M3_09980 PF13307 Helicase C-terminal domain K08M3_10010 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K08M3_10020 PF00849 RNA pseudouridylate synthase K08M3_10030 PF03971 Monomeric isocitrate dehydrogenase K08M3_10040 PF00313 'Cold-shock' DNA-binding domain K08M3_10050 PF02617 ATP-dependent Clp protease adaptor protein ClpS K08M3_10060 PF10431 C-terminal, D2-small domain, of ClpB protein K08M3_10060 PF02861 Clp amino terminal domain, pathogenicity island component K08M3_10060 PF17871 AAA lid domain K08M3_10060 PF07724 AAA domain (Cdc48 subfamily) K08M3_10060 PF00004 ATPase family associated with various cellular activities (AAA) K08M3_10070 PF01176 Translation initiation factor 1A / IF-1 K08M3_10080 PF04377 Arginine-tRNA-protein transferase, C terminus K08M3_10080 PF04376 Arginine-tRNA-protein transferase, N terminus K08M3_10090 PF03588 Leucyl/phenylalanyl-tRNA protein transferase K08M3_10110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K08M3_10120 PF10692 Protein of unknown function (DUF2498) K08M3_10130 PF08272 Topoisomerase I zinc-ribbon-like K08M3_10130 PF01131 DNA topoisomerase K08M3_10130 PF01751 Toprim domain K08M3_10130 PF01396 Topoisomerase DNA binding C4 zinc finger K08M3_10140 PF00483 Nucleotidyl transferase K08M3_10150 PF00534 Glycosyl transferases group 1 K08M3_10150 PF08323 Starch synthase catalytic domain K08M3_10190 PF04994 TfoX C-terminal domain K08M3_10190 PF04993 TfoX N-terminal domain K08M3_10200 PF00356 Bacterial regulatory proteins, lacI family K08M3_10210 PF02613 Nitrate reductase delta subunit K08M3_10220 PF00072 Response regulator receiver domain K08M3_10220 PF00486 Transcriptional regulatory protein, C terminal K08M3_10230 PF02698 DUF218 domain K08M3_10250 PF17193 MukF C-terminal domain K08M3_10250 PF03882 MukF winged-helix domain K08M3_10250 PF17192 MukF middle domain K08M3_10260 PF04288 MukE-like family K08M3_10270 PF16330 MukB hinge domain K08M3_10270 PF04310 MukB N-terminal K08M3_10310 PF08443 RimK-like ATP-grasp domain K08M3_10310 PF18030 RimK PreATP-grasp domain K08M3_10320 PF08003 Protein of unknown function (DUF1698) K08M3_10330 PF13649 Methyltransferase domain K08M3_10340 PF01904 Protein of unknown function DUF72 K08M3_10350 PF01336 OB-fold nucleic acid binding domain K08M3_10350 PF00152 tRNA synthetases class II (D, K and N) K08M3_10350 PF02938 GAD domain K08M3_10360 PF01709 Transcriptional regulator K08M3_10370 PF02075 Crossover junction endodeoxyribonuclease RuvC K08M3_10380 PF01330 RuvA N terminal domain K08M3_10380 PF07499 RuvA, C-terminal domain K08M3_10390 PF05491 RuvB C-terminal winged helix domain K08M3_10390 PF05496 Holliday junction DNA helicase RuvB P-loop domain K08M3_10390 PF17864 RuvB AAA lid domain K08M3_10400 PF01654 Cytochrome bd terminal oxidase subunit I K08M3_10410 PF02322 Cytochrome bd terminal oxidase subunit II K08M3_10420 PF08173 Membrane bound YbgT-like protein K08M3_10440 PF03061 Thioesterase superfamily K08M3_10450 PF01618 MotA/TolQ/ExbB proton channel family K08M3_10460 PF02472 Biopolymer transport protein ExbD/TolR K08M3_10480 PF04052 TolB amino-terminal domain K08M3_10480 PF07676 WD40-like Beta Propeller Repeat K08M3_10490 PF00691 OmpA family K08M3_10500 PF13174 Tetratricopeptide repeat K08M3_10500 PF16331 TolA binding protein trimerisation K08M3_10590 PF01709 Transcriptional regulator K08M3_10600 PF02075 Crossover junction endodeoxyribonuclease RuvC K08M3_10610 PF07499 RuvA, C-terminal domain K08M3_10610 PF01330 RuvA N terminal domain K08M3_10620 PF05496 Holliday junction DNA helicase RuvB P-loop domain K08M3_10620 PF17864 RuvB AAA lid domain K08M3_10620 PF05491 RuvB C-terminal winged helix domain K08M3_10630 PF01654 Cytochrome bd terminal oxidase subunit I K08M3_10640 PF02322 Cytochrome bd terminal oxidase subunit II K08M3_10650 PF08173 Membrane bound YbgT-like protein K08M3_10670 PF03061 Thioesterase superfamily K08M3_10680 PF01618 MotA/TolQ/ExbB proton channel family K08M3_10690 PF02472 Biopolymer transport protein ExbD/TolR K08M3_10710 PF04052 TolB amino-terminal domain K08M3_10710 PF07676 WD40-like Beta Propeller Repeat K08M3_10720 PF00691 OmpA family K08M3_10730 PF13174 Tetratricopeptide repeat K08M3_10730 PF16331 TolA binding protein trimerisation K08M3_10740 PF02445 Quinolinate synthetase A protein K08M3_10760 PF03994 Domain of Unknown Function (DUF350) K08M3_10780 PF03738 Glutathionylspermidine synthase preATP-grasp K08M3_10800 PF00512 His Kinase A (phospho-acceptor) domain K08M3_10800 PF09308 LuxQ, periplasmic K08M3_10800 PF00072 Response regulator receiver domain K08M3_10800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_10810 PF06610 L-alanine exporter K08M3_10840 PF02322 Cytochrome bd terminal oxidase subunit II K08M3_10850 PF01654 Cytochrome bd terminal oxidase subunit I K08M3_10900 PF00529 HlyD membrane-fusion protein of T1SS K08M3_10900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_10910 PF00873 AcrB/AcrD/AcrF family K08M3_10940 PF00579 tRNA synthetases class I (W and Y) K08M3_10960 PF03372 Endonuclease/Exonuclease/phosphatase family K08M3_10980 PF00672 HAMP domain K08M3_10980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_10990 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) K08M3_11010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_11010 PF03466 LysR substrate binding domain K08M3_11030 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K08M3_11030 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K08M3_11040 PF01037 Lrp/AsnC ligand binding domain K08M3_11050 PF09397 Ftsk gamma domain K08M3_11050 PF13491 4TM region of DNA translocase FtsK/SpoIIIE K08M3_11050 PF17854 FtsK alpha domain K08M3_11050 PF01580 FtsK/SpoIIIE family K08M3_11060 PF03548 Outer membrane lipoprotein carrier protein LolA K08M3_11070 PF12002 MgsA AAA+ ATPase C terminal K08M3_11070 PF16193 AAA C-terminal domain K08M3_11070 PF00004 ATPase family associated with various cellular activities (AAA) K08M3_11080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K08M3_11080 PF02403 Seryl-tRNA synthetase N-terminal domain K08M3_11110 PF01258 Prokaryotic dksA/traR C4-type zinc finger K08M3_11120 PF00202 Aminotransferase class-III K08M3_11130 PF06968 Biotin and Thiamin Synthesis associated domain K08M3_11130 PF04055 Radical SAM superfamily K08M3_11140 PF00155 Aminotransferase class I and II K08M3_11150 PF08241 Methyltransferase domain K08M3_11180 PF01435 Peptidase family M48 K08M3_11200 PF00106 short chain dehydrogenase K08M3_11250 PF16036 Chalcone isomerase-like K08M3_11270 PF08328 Adenylosuccinate lyase C-terminal K08M3_11270 PF00206 Lyase K08M3_11280 PF04356 Protein of unknown function (DUF489) K08M3_11310 PF00294 pfkB family carbohydrate kinase K08M3_11320 PF00816 H-NS histone family K08M3_11330 PF03553 Na+/H+ antiporter family K08M3_11340 PF08029 HisG, C-terminal domain K08M3_11340 PF01634 ATP phosphoribosyltransferase K08M3_11350 PF00815 Histidinol dehydrogenase K08M3_11360 PF00155 Aminotransferase class I and II K08M3_11370 PF08645 Polynucleotide kinase 3 phosphatase K08M3_11370 PF00475 Imidazoleglycerol-phosphate dehydratase K08M3_11380 PF00117 Glutamine amidotransferase class-I K08M3_11390 PF00977 Histidine biosynthesis protein K08M3_11400 PF00977 Histidine biosynthesis protein K08M3_11410 PF01502 Phosphoribosyl-AMP cyclohydrolase K08M3_11410 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase K08M3_11420 PF02810 SEC-C motif K08M3_11430 PF08668 HDOD domain K08M3_11430 PF00563 EAL domain K08M3_11440 PF00149 Calcineurin-like phosphoesterase K08M3_11450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K08M3_11460 PF01406 tRNA synthetases class I (C) catalytic domain K08M3_11460 PF09190 DALR domain K08M3_11470 PF00265 Thymidine kinase K08M3_11530 PF01226 Formate/nitrite transporter K08M3_11550 PF03649 Uncharacterised protein family (UPF0014) K08M3_11560 PF06796 Periplasmic nitrate reductase protein NapE K08M3_11570 PF03264 NapC/NirT cytochrome c family, N-terminal region K08M3_11580 PF01568 Molydopterin dinucleotide binding domain K08M3_11580 PF00384 Molybdopterin oxidoreductase K08M3_11580 PF18364 Molybdopterin oxidoreductase N-terminal domain K08M3_11590 PF16874 Glycosyl hydrolase family 36 C-terminal domain K08M3_11590 PF16875 Glycosyl hydrolase family 36 N-terminal domain K08M3_11610 PF01368 DHH family K08M3_11610 PF02833 DHHA2 domain K08M3_11630 PF00005 ABC transporter K08M3_11640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_11640 PF00005 ABC transporter K08M3_11650 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_11650 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M3_11660 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_11670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_11680 PF00158 Sigma-54 interaction domain K08M3_11680 PF02954 Bacterial regulatory protein, Fis family K08M3_11690 PF04012 PspA/IM30 family K08M3_11700 PF06667 Phage shock protein B K08M3_11710 PF04024 PspC domain K08M3_11730 PF13533 Biotin-lipoyl like K08M3_11740 PF00873 AcrB/AcrD/AcrF family K08M3_11750 PF03352 Methyladenine glycosylase K08M3_11760 PF03280 Proteobacterial lipase chaperone protein K08M3_11770 PF00561 alpha/beta hydrolase fold K08M3_11780 PF01053 Cys/Met metabolism PLP-dependent enzyme K08M3_11790 PF13396 Phospholipase_D-nuclease N-terminal K08M3_11790 PF13091 PLD-like domain K08M3_11800 PF00209 Sodium:neurotransmitter symporter family K08M3_11810 PF00849 RNA pseudouridylate synthase K08M3_11830 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M3_11830 PF00175 Oxidoreductase NAD-binding domain K08M3_11830 PF00970 Oxidoreductase FAD-binding domain K08M3_11840 PF03063 Prismane/CO dehydrogenase family K08M3_11850 PF00158 Sigma-54 interaction domain K08M3_11850 PF01590 GAF domain K08M3_11870 PF01066 CDP-alcohol phosphatidyltransferase K08M3_11880 PF00005 ABC transporter K08M3_11890 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_11900 PF13416 Bacterial extracellular solute-binding protein K08M3_11920 PF06945 Protein of unknown function (DUF1289) K08M3_11940 PF02872 5'-nucleotidase, C-terminal domain K08M3_11940 PF00149 Calcineurin-like phosphoesterase K08M3_11960 PF01386 Ribosomal L25p family K08M3_11970 PF00672 HAMP domain K08M3_11970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_11970 PF00512 His Kinase A (phospho-acceptor) domain K08M3_11980 PF00072 Response regulator receiver domain K08M3_11980 PF00486 Transcriptional regulatory protein, C terminal K08M3_12000 PF04851 Type III restriction enzyme, res subunit K08M3_12000 PF00271 Helicase conserved C-terminal domain K08M3_12010 PF01479 S4 domain K08M3_12010 PF00849 RNA pseudouridylate synthase K08M3_12020 PF07690 Major Facilitator Superfamily K08M3_12040 PF11066 Protein of unknown function (DUF2867) K08M3_12040 PF13460 NAD(P)H-binding K08M3_12050 PF01554 MatE K08M3_12060 PF00005 ABC transporter K08M3_12090 PF06965 Na+/H+ antiporter 1 K08M3_12100 PF16295 Tetracyclin repressor-like, C-terminal domain K08M3_12100 PF00440 Bacterial regulatory proteins, tetR family K08M3_12110 PF09317 Domain of unknown function (DUF1974) K08M3_12110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K08M3_12110 PF02770 Acyl-CoA dehydrogenase, middle domain K08M3_12110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K08M3_12120 PF07055 Enoyl reductase FAD binding domain K08M3_12120 PF12241 Trans-2-enoyl-CoA reductase catalytic region K08M3_12120 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase K08M3_12130 PF02080 TrkA-C domain K08M3_12130 PF06826 Predicted Permease Membrane Region K08M3_12140 PF00462 Glutaredoxin K08M3_12160 PF00465 Iron-containing alcohol dehydrogenase K08M3_12170 PF01418 Helix-turn-helix domain, rpiR family K08M3_12170 PF01380 SIS domain K08M3_12180 PF00282 Pyridoxal-dependent decarboxylase conserved domain K08M3_12200 PF03956 Lysine exporter LysO K08M3_12220 PF04993 TfoX N-terminal domain K08M3_12220 PF04994 TfoX C-terminal domain K08M3_12260 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_12260 PF00512 His Kinase A (phospho-acceptor) domain K08M3_12260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_12280 PF00266 Aminotransferase class-V K08M3_12290 PF00291 Pyridoxal-phosphate dependent enzyme K08M3_12300 PF00664 ABC transporter transmembrane region K08M3_12300 PF00005 ABC transporter K08M3_12310 PF00664 ABC transporter transmembrane region K08M3_12310 PF00005 ABC transporter K08M3_12320 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_12340 PF00266 Aminotransferase class-V K08M3_12360 PF00072 Response regulator receiver domain K08M3_12360 PF00990 Diguanylate cyclase, GGDEF domain K08M3_12370 PF00939 Sodium:sulfate symporter transmembrane region K08M3_12380 PF02698 DUF218 domain K08M3_12390 PF03949 Malic enzyme, NAD binding domain K08M3_12390 PF00390 Malic enzyme, N-terminal domain K08M3_12400 PF04408 Helicase associated domain (HA2) K08M3_12400 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold K08M3_12400 PF00271 Helicase conserved C-terminal domain K08M3_12400 PF00270 DEAD/DEAH box helicase K08M3_12400 PF11898 Domain of unknown function (DUF3418) K08M3_12420 PF16655 PhoD-like phosphatase, N-terminal domain K08M3_12420 PF09423 PhoD-like phosphatase K08M3_12430 PF01259 SAICAR synthetase K08M3_12470 PF00691 OmpA family K08M3_12470 PF05736 OprF membrane domain K08M3_12500 PF01565 FAD binding domain K08M3_12500 PF02913 FAD linked oxidases, C-terminal domain K08M3_12500 PF13183 4Fe-4S dicluster domain K08M3_12510 PF04191 Phospholipid methyltransferase K08M3_12530 PF00221 Aromatic amino acid lyase K08M3_12540 PF01175 Urocanase Rossmann-like domain K08M3_12540 PF17391 Urocanase N-terminal domain K08M3_12540 PF17392 Urocanase C-terminal domain K08M3_12550 PF00491 Arginase family K08M3_12560 PF01979 Amidohydrolase family K08M3_12570 PF07702 UTRA domain K08M3_12570 PF00392 Bacterial regulatory proteins, gntR family K08M3_12600 PF02824 TGS domain K08M3_12600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K08M3_12600 PF03129 Anticodon binding domain K08M3_12600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K08M3_12610 PF05198 Translation initiation factor IF-3, N-terminal domain K08M3_12610 PF00707 Translation initiation factor IF-3, C-terminal domain K08M3_12620 PF01632 Ribosomal protein L35 K08M3_12630 PF00453 Ribosomal protein L20 K08M3_12640 PF01906 Putative heavy-metal-binding K08M3_12710 PF01409 tRNA synthetases class II core domain (F) K08M3_12710 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain K08M3_12720 PF03484 tRNA synthetase B5 domain K08M3_12720 PF03483 B3/4 domain K08M3_12720 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain K08M3_12720 PF03147 Ferredoxin-fold anticodon binding domain K08M3_12720 PF01588 Putative tRNA binding domain K08M3_12740 PF00216 Bacterial DNA-binding protein K08M3_12760 PF05724 Thiopurine S-methyltransferase (TPMT) K08M3_12770 PF02222 ATP-grasp domain K08M3_12780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K08M3_12780 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region K08M3_12790 PF04172 LrgB-like family K08M3_12800 PF03788 LrgA family K08M3_12810 PF00929 Exonuclease K08M3_12810 PF08411 Exonuclease C-terminal K08M3_12930 PF03120 NAD-dependent DNA ligase OB-fold domain K08M3_12930 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K08M3_12930 PF00533 BRCA1 C Terminus (BRCT) domain K08M3_12930 PF12826 Helix-hairpin-helix motif K08M3_12930 PF01653 NAD-dependent DNA ligase adenylation domain K08M3_12990 PF01695 IstB-like ATP binding protein K08M3_13290 PF13460 NAD(P)H-binding K08M3_13300 PF02277 Phosphoribosyltransferase K08M3_13310 PF02654 Cobalamin-5-phosphate synthase K08M3_13320 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase K08M3_13350 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K08M3_13360 PF01032 FecCD transport family K08M3_13370 PF00005 ABC transporter K08M3_13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_13410 PF03466 LysR substrate binding domain K08M3_13430 PF01863 Protein of unknown function DUF45 K08M3_13440 PF05971 RNA methyltransferase K08M3_13480 PF00392 Bacterial regulatory proteins, gntR family K08M3_13490 PF00171 Aldehyde dehydrogenase family K08M3_13500 PF05544 Proline racemase K08M3_13510 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K08M3_13510 PF01266 FAD dependent oxidoreductase K08M3_13530 PF02423 Ornithine cyclodeaminase/mu-crystallin family K08M3_13540 PF00701 Dihydrodipicolinate synthetase family K08M3_13550 PF00005 ABC transporter K08M3_13550 PF08402 TOBE domain K08M3_13560 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_13570 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_13590 PF08453 Peptidase family M9 N-terminal K08M3_13590 PF01752 Collagenase K08M3_13610 PF00005 ABC transporter K08M3_13610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_13620 PF00005 ABC transporter K08M3_13620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_13630 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_13630 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M3_13640 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_13650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_13660 PF07687 Peptidase dimerisation domain K08M3_13660 PF01546 Peptidase family M20/M25/M40 K08M3_13670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M3_13680 PF04209 homogentisate 1,2-dioxygenase K08M3_13700 PF02798 Glutathione S-transferase, N-terminal domain K08M3_13700 PF14497 Glutathione S-transferase, C-terminal domain K08M3_13800 PF07007 Lysozyme inhibitor LprI K08M3_13850 PF02694 Uncharacterised BCR, YnfA/UPF0060 family K08M3_13880 PF03553 Na+/H+ antiporter family K08M3_13890 PF00120 Glutamine synthetase, catalytic domain K08M3_13900 PF07722 Peptidase C26 K08M3_13910 PF01381 Helix-turn-helix K08M3_13910 PF07883 Cupin domain K08M3_13920 PF00171 Aldehyde dehydrogenase family K08M3_13930 PF01266 FAD dependent oxidoreductase K08M3_13940 PF00795 Carbon-nitrogen hydrolase K08M3_13950 PF04371 Porphyromonas-type peptidyl-arginine deiminase K08M3_13960 PF00171 Aldehyde dehydrogenase family K08M3_13970 PF00202 Aminotransferase class-III K08M3_13980 PF12792 CSS motif domain associated with EAL K08M3_13980 PF00563 EAL domain K08M3_14000 PF01047 MarR family K08M3_14010 PF04237 YjbR K08M3_14060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K08M3_14060 PF00072 Response regulator receiver domain K08M3_14060 PF01627 Hpt domain K08M3_14060 PF00512 His Kinase A (phospho-acceptor) domain K08M3_14060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_14060 PF00672 HAMP domain K08M3_14070 PF00990 Diguanylate cyclase, GGDEF domain K08M3_14070 PF00563 EAL domain K08M3_14070 PF03707 Bacterial signalling protein N terminal repeat K08M3_14100 PF04204 Homoserine O-succinyltransferase K08M3_14120 PF00893 Small Multidrug Resistance protein K08M3_14130 PF03279 Bacterial lipid A biosynthesis acyltransferase K08M3_14150 PF00239 Resolvase, N terminal domain K08M3_14150 PF07508 Recombinase K08M3_14150 PF13408 Recombinase zinc beta ribbon domain K08M3_14220 PF02796 Helix-turn-helix domain of resolvase K08M3_14220 PF00239 Resolvase, N terminal domain K08M3_14400 PF02074 Carboxypeptidase Taq (M32) metallopeptidase K08M3_14410 PF01810 LysE type translocator K08M3_14430 PF01235 Sodium:alanine symporter family K08M3_14480 PF00884 Sulfatase K08M3_14490 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K08M3_14500 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_14510 PF00005 ABC transporter K08M3_14510 PF00571 CBS domain K08M3_14540 PF02028 BCCT, betaine/carnitine/choline family transporter K08M3_14550 PF00583 Acetyltransferase (GNAT) family K08M3_14560 PF00202 Aminotransferase class-III K08M3_14570 PF06339 Ectoine synthase K08M3_14580 PF00696 Amino acid kinase family K08M3_14580 PF13840 ACT domain K08M3_14590 PF00884 Sulfatase K08M3_14610 PF03781 Sulfatase-modifying factor enzyme 1 K08M3_14620 PF13186 Iron-sulfur cluster-binding domain K08M3_14620 PF04055 Radical SAM superfamily K08M3_14650 PF00884 Sulfatase K08M3_14660 PF00884 Sulfatase K08M3_14680 PF00664 ABC transporter transmembrane region K08M3_14680 PF00005 ABC transporter K08M3_14680 PF03412 Peptidase C39 family K08M3_14700 PF02321 Outer membrane efflux protein K08M3_14730 PF00455 DeoR C terminal sensor domain K08M3_14730 PF08220 DeoR-like helix-turn-helix domain K08M3_14740 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K08M3_14740 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K08M3_14750 PF03928 Haem-degrading K08M3_14760 PF00990 Diguanylate cyclase, GGDEF domain K08M3_14760 PF00072 Response regulator receiver domain K08M3_14800 PF00939 Sodium:sulfate symporter transmembrane region K08M3_14810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_14810 PF00512 His Kinase A (phospho-acceptor) domain K08M3_14820 PF02954 Bacterial regulatory protein, Fis family K08M3_14820 PF00072 Response regulator receiver domain K08M3_14820 PF00158 Sigma-54 interaction domain K08M3_14830 PF00563 EAL domain K08M3_14830 PF00990 Diguanylate cyclase, GGDEF domain K08M3_14830 PF03707 Bacterial signalling protein N terminal repeat K08M3_14840 PF11871 Domain of unknown function (DUF3391) K08M3_14840 PF01966 HD domain K08M3_14850 PF01810 LysE type translocator K08M3_14860 PF11230 Protein of unknown function (DUF3029) K08M3_14870 PF04055 Radical SAM superfamily K08M3_14890 PF03741 Integral membrane protein TerC family K08M3_14910 PF01966 HD domain K08M3_14920 PF00465 Iron-containing alcohol dehydrogenase K08M3_14930 PF03222 Tryptophan/tyrosine permease family K08M3_14940 PF01966 HD domain K08M3_14940 PF11871 Domain of unknown function (DUF3391) K08M3_14960 PF00005 ABC transporter K08M3_14970 PF01497 Periplasmic binding protein K08M3_14980 PF01032 FecCD transport family K08M3_14990 PF07715 TonB-dependent Receptor Plug Domain K08M3_14990 PF00593 TonB dependent receptor K08M3_15010 PF00664 ABC transporter transmembrane region K08M3_15010 PF00005 ABC transporter K08M3_15020 PF00005 ABC transporter K08M3_15020 PF00664 ABC transporter transmembrane region K08M3_15030 PF08334 Type II secretion system (T2SS), protein G K08M3_15030 PF07963 Prokaryotic N-terminal methylation motif K08M3_15050 PF03466 LysR substrate binding domain K08M3_15050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_15070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K08M3_15070 PF02894 Oxidoreductase family, C-terminal alpha/beta domain K08M3_15100 PF00012 Hsp70 protein K08M3_15110 PF00012 Hsp70 protein K08M3_15130 PF00990 Diguanylate cyclase, GGDEF domain K08M3_15210 PF02525 Flavodoxin-like fold K08M3_15220 PF11898 Domain of unknown function (DUF3418) K08M3_15220 PF04408 Helicase associated domain (HA2) K08M3_15220 PF00271 Helicase conserved C-terminal domain K08M3_15220 PF00270 DEAD/DEAH box helicase K08M3_15220 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold K08M3_15250 PF02028 BCCT, betaine/carnitine/choline family transporter K08M3_15270 PF02397 Bacterial sugar transferase K08M3_15290 PF13439 Glycosyltransferase Family 4 K08M3_15290 PF00534 Glycosyl transferases group 1 K08M3_15350 PF00534 Glycosyl transferases group 1 K08M3_15350 PF13439 Glycosyltransferase Family 4 K08M3_15360 PF00534 Glycosyl transferases group 1 K08M3_15360 PF13439 Glycosyltransferase Family 4 K08M3_15370 PF02954 Bacterial regulatory protein, Fis family K08M3_15370 PF00072 Response regulator receiver domain K08M3_15370 PF00158 Sigma-54 interaction domain K08M3_15400 PF02563 Polysaccharide biosynthesis/export protein K08M3_15400 PF10531 SLBB domain K08M3_15420 PF01740 STAS domain K08M3_15440 PF01068 ATP dependent DNA ligase domain K08M3_15440 PF14743 DNA ligase OB-like domain K08M3_15460 PF01554 MatE K08M3_15470 PF00677 Lumazine binding domain K08M3_15500 PF01339 CheB methylesterase K08M3_15500 PF00072 Response regulator receiver domain K08M3_15510 PF00990 Diguanylate cyclase, GGDEF domain K08M3_15510 PF05230 MASE2 domain K08M3_15530 PF00877 NlpC/P60 family K08M3_15610 PF00480 ROK family K08M3_15630 PF03453 MoeA N-terminal region (domain I and II) K08M3_15630 PF03454 MoeA C-terminal region (domain IV) K08M3_15630 PF00994 Probable molybdopterin binding domain K08M3_15640 PF12804 MobA-like NTP transferase domain K08M3_15650 PF00005 ABC transporter K08M3_15650 PF08402 TOBE domain K08M3_15660 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_15670 PF12849 PBP superfamily domain K08M3_15680 PF02954 Bacterial regulatory protein, Fis family K08M3_15680 PF00072 Response regulator receiver domain K08M3_15680 PF00158 Sigma-54 interaction domain K08M3_15690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_15690 PF00512 His Kinase A (phospho-acceptor) domain K08M3_15700 PF00005 ABC transporter K08M3_15700 PF12848 ABC transporter K08M3_15720 PF02634 FdhD/NarQ family K08M3_15760 PF02613 Nitrate reductase delta subunit K08M3_15780 PF00384 Molybdopterin oxidoreductase K08M3_15780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K08M3_15780 PF01568 Molydopterin dinucleotide binding domain K08M3_15790 PF13247 4Fe-4S dicluster domain K08M3_15840 PF00909 Ammonium Transporter Family K08M3_15860 PF02146 Sir2 family K08M3_15870 PF13416 Bacterial extracellular solute-binding protein K08M3_15880 PF13416 Bacterial extracellular solute-binding protein K08M3_15890 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_15900 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_15910 PF08402 TOBE domain K08M3_15910 PF00005 ABC transporter K08M3_15950 PF01171 PP-loop family K08M3_15960 PF00582 Universal stress protein family K08M3_15970 PF13545 Crp-like helix-turn-helix domain K08M3_15970 PF00027 Cyclic nucleotide-binding domain K08M3_16000 PF00403 Heavy-metal-associated domain K08M3_16020 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP K08M3_16020 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K08M3_16050 PF00115 Cytochrome C and Quinol oxidase polypeptide I K08M3_16080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_16080 PF00072 Response regulator receiver domain K08M3_16080 PF00512 His Kinase A (phospho-acceptor) domain K08M3_16080 PF09308 LuxQ, periplasmic K08M3_16110 PF17414 MatP C-terminal ribbon-helix-helix domain K08M3_16110 PF06303 MatP N-terminal domain K08M3_16120 PF05362 Lon protease (S16) C-terminal proteolytic domain K08M3_16120 PF13654 AAA domain K08M3_16130 PF07977 FabA-like domain K08M3_16140 PF04957 Ribosome modulation factor K08M3_16180 PF01170 Putative RNA methylase family UPF0020 K08M3_16180 PF02926 THUMP domain K08M3_16180 PF10672 S-adenosylmethionine-dependent methyltransferase K08M3_16190 PF07126 Cell-division protein ZapC K08M3_16200 PF01180 Dihydroorotate dehydrogenase K08M3_16210 PF05088 Bacterial NAD-glutamate dehydrogenase K08M3_16220 PF11940 Domain of unknown function (DUF3458) Ig-like fold K08M3_16220 PF01433 Peptidase family M1 domain K08M3_16220 PF17432 Domain of unknown function (DUF3458_C) ARM repeats K08M3_16240 PF00595 PDZ domain K08M3_16240 PF03572 Peptidase family S41 K08M3_16240 PF11818 C-terminal domain of tail specific protease (DUF3340) K08M3_16240 PF17804 Tail specific protease N-terminal domain K08M3_16250 PF04352 ProQ/FINO family K08M3_16250 PF17516 ProQ C-terminal domain K08M3_16260 PF13185 GAF domain K08M3_16270 PF00005 ABC transporter K08M3_16270 PF00664 ABC transporter transmembrane region K08M3_16280 PF04403 Paraquat-inducible protein A K08M3_16290 PF02470 MlaD protein K08M3_16300 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF K08M3_16300 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF K08M3_16300 PF01189 16S rRNA methyltransferase RsmB/F K08M3_16340 PF00793 DAHP synthetase I family K08M3_16350 PF04461 Protein of unknown function (DUF520) K08M3_16360 PF10414 Sirohaem synthase dimerisation region K08M3_16360 PF14824 Sirohaem biosynthesis protein central K08M3_16360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M3_16370 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_16390 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_16400 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_16410 PF00005 ABC transporter K08M3_16420 PF01027 Inhibitor of apoptosis-promoting Bax1 K08M3_16440 PF04358 DsrC like protein K08M3_16450 PF00708 Acylphosphatase K08M3_16460 PF00672 HAMP domain K08M3_16460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_16460 PF17200 Single Cache domain 2 K08M3_16470 PF17785 PUA-like domain K08M3_16470 PF10672 S-adenosylmethionine-dependent methyltransferase K08M3_16500 PF00691 OmpA family K08M3_16530 PF05736 OprF membrane domain K08M3_16530 PF00691 OmpA family K08M3_16550 PF00990 Diguanylate cyclase, GGDEF domain K08M3_16560 PF01614 Bacterial transcriptional regulator K08M3_16560 PF09339 IclR helix-turn-helix domain K08M3_16580 PF00248 Aldo/keto reductase family K08M3_16590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_16590 PF03466 LysR substrate binding domain K08M3_16610 PF03466 LysR substrate binding domain K08M3_16610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_16620 PF07690 Major Facilitator Superfamily K08M3_16640 PF14765 Polyketide synthase dehydratase K08M3_16640 PF00550 Phosphopantetheine attachment site K08M3_16640 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M3_16640 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M3_16640 PF16197 Ketoacyl-synthetase C-terminal extension K08M3_16640 PF00698 Acyl transferase domain K08M3_16640 PF08240 Alcohol dehydrogenase GroES-like domain K08M3_16640 PF00107 Zinc-binding dehydrogenase K08M3_16640 PF08659 KR domain K08M3_16650 PF02311 AraC-like ligand binding domain K08M3_16650 PF12833 Helix-turn-helix domain K08M3_16660 PF00857 Isochorismatase family K08M3_16670 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_16690 PF08240 Alcohol dehydrogenase GroES-like domain K08M3_16690 PF00107 Zinc-binding dehydrogenase K08M3_16700 PF02574 Homocysteine S-methyltransferase K08M3_16700 PF00809 Pterin binding enzyme K08M3_16700 PF02965 Vitamin B12 dependent methionine synthase, activation domain K08M3_16700 PF02607 B12 binding domain K08M3_16700 PF02310 B12 binding domain K08M3_16710 PF00005 ABC transporter K08M3_16720 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_16730 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_16760 PF00267 Gram-negative porin K08M3_16770 PF03466 LysR substrate binding domain K08M3_16770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_16790 PF00873 AcrB/AcrD/AcrF family K08M3_16800 PF03466 LysR substrate binding domain K08M3_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_16820 PF03466 LysR substrate binding domain K08M3_16820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_16830 PF01810 LysE type translocator K08M3_16850 PF06508 Queuosine biosynthesis protein QueC K08M3_16860 PF04055 Radical SAM superfamily K08M3_16890 PF00089 Trypsin K08M3_16910 PF16177 Acetyl-coenzyme A synthetase N-terminus K08M3_16910 PF00501 AMP-binding enzyme K08M3_16910 PF13193 AMP-binding enzyme C-terminal domain K08M3_16920 PF04303 PrpF protein K08M3_16930 PF00330 Aconitase family (aconitate hydratase) K08M3_16930 PF00694 Aconitase C-terminal domain K08M3_16940 PF00285 Citrate synthase, C-terminal domain K08M3_17000 PF01970 Tripartite tricarboxylate transporter TctA family K08M3_17020 PF01925 Sulfite exporter TauE/SafE K08M3_17030 PF16868 NMT1-like family K08M3_17040 PF05844 YopD protein K08M3_17060 PF07720 Tetratricopeptide repeat K08M3_17070 PF04792 V antigen (LcrV) protein K08M3_17090 PF09621 Type III secretion system regulator (LcrR) K08M3_17100 PF00771 FHIPEP family K08M3_17140 PF09059 TyeA K08M3_17160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M3_17160 PF18269 T3SS EscN ATPase C-terminal domain K08M3_17160 PF02874 ATP synthase alpha/beta family, beta-barrel domain K08M3_17190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K08M3_17200 PF00813 FliP family K08M3_17210 PF01313 Bacterial export proteins, family 3 K08M3_17220 PF01311 Bacterial export proteins, family 1 K08M3_17230 PF01312 FlhB HrpN YscU SpaS Family K08M3_17240 PF12833 Helix-turn-helix domain K08M3_17240 PF12852 Cupin K08M3_17300 PF02661 Fic/DOC family K08M3_17320 PF02108 Flagellar assembly protein FliH K08M3_17340 PF01514 Secretory protein of YscJ/FliF family K08M3_17350 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI K08M3_17370 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) K08M3_17380 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF K08M3_17400 PF16697 Inner membrane component of T3SS, cytoplasmic domain K08M3_17400 PF16693 Inner membrane component of T3SS, periplasmic domain K08M3_17440 PF12833 Helix-turn-helix domain K08M3_17480 PF00171 Aldehyde dehydrogenase family K08M3_17490 PF01590 GAF domain K08M3_17490 PF00158 Sigma-54 interaction domain K08M3_17490 PF02954 Bacterial regulatory protein, Fis family K08M3_17520 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M3_17520 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain K08M3_17530 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K08M3_17540 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain K08M3_17540 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain K08M3_17550 PF12833 Helix-turn-helix domain K08M3_17550 PF02311 AraC-like ligand binding domain K08M3_17560 PF07715 TonB-dependent Receptor Plug Domain K08M3_17560 PF00593 TonB dependent receptor K08M3_17570 PF00072 Response regulator receiver domain K08M3_17570 PF12431 Transcriptional regulator K08M3_17580 PF17203 Single cache domain 3 K08M3_17580 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain K08M3_17580 PF00989 PAS fold K08M3_17580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_17610 PF13533 Biotin-lipoyl like K08M3_17640 PF03466 LysR substrate binding domain K08M3_17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_17670 PF08543 Phosphomethylpyrimidine kinase K08M3_17680 PF00155 Aminotransferase class I and II K08M3_17690 PF02080 TrkA-C domain K08M3_17690 PF06826 Predicted Permease Membrane Region K08M3_17710 PF13533 Biotin-lipoyl like K08M3_17760 PF00135 Carboxylesterase family K08M3_17790 PF17243 POTRA domain TamA domain 1 K08M3_17790 PF01103 Surface antigen K08M3_17800 PF11008 Protein of unknown function (DUF2846) K08M3_17810 PF01810 LysE type translocator K08M3_17820 PF01810 LysE type translocator K08M3_17830 PF07237 Protein of unknown function (DUF1428) K08M3_17870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K08M3_17870 PF01411 tRNA synthetases class II (A) K08M3_17870 PF02272 DHHA1 domain K08M3_17880 PF13302 Acetyltransferase (GNAT) domain K08M3_17890 PF14602 Hexapeptide repeat of succinyl-transferase K08M3_17890 PF12464 Maltose acetyltransferase K08M3_17970 PF13276 HTH-like domain K08M3_17970 PF00665 Integrase core domain K08M3_17970 PF13333 Integrase core domain K08M3_18020 PF04463 Protein of unknown function (DUF523) K08M3_18030 PF00583 Acetyltransferase (GNAT) family K08M3_18140 PF13276 HTH-like domain K08M3_18140 PF13333 Integrase core domain K08M3_18140 PF00665 Integrase core domain K08M3_18190 PF01844 HNH endonuclease K08M3_18320 PF13495 Phage integrase, N-terminal SAM-like domain K08M3_18320 PF00589 Phage integrase family K08M3_18350 PF00990 Diguanylate cyclase, GGDEF domain K08M3_18360 PF00665 Integrase core domain K08M3_18370 PF06826 Predicted Permease Membrane Region K08M3_18380 PF00282 Pyridoxal-dependent decarboxylase conserved domain K08M3_18390 PF01544 CorA-like Mg2+ transporter protein K08M3_18410 PF01699 Sodium/calcium exchanger protein K08M3_18420 PF01699 Sodium/calcium exchanger protein K08M3_18450 PF04632 Fusaric acid resistance protein family K08M3_18460 PF00529 HlyD membrane-fusion protein of T1SS K08M3_18460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_18480 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family K08M3_18500 PF02080 TrkA-C domain K08M3_18500 PF06826 Predicted Permease Membrane Region K08M3_18510 PF00999 Sodium/hydrogen exchanger family K08M3_18530 PF13007 Transposase C of IS166 homeodomain K08M3_18530 PF03050 Transposase IS66 family K08M3_18530 PF13005 zinc-finger binding domain of transposase IS66 K08M3_18530 PF13817 IS66 C-terminal element K08M3_18550 PF04976 DMSO reductase anchor subunit (DmsC) K08M3_18560 PF13247 4Fe-4S dicluster domain K08M3_18560 PF12800 4Fe-4S binding domain K08M3_18570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K08M3_18570 PF01568 Molydopterin dinucleotide binding domain K08M3_18570 PF00384 Molybdopterin oxidoreductase K08M3_18580 PF02613 Nitrate reductase delta subunit K08M3_18590 PF12838 4Fe-4S dicluster domain K08M3_18590 PF00037 4Fe-4S binding domain K08M3_18600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_18600 PF00072 Response regulator receiver domain K08M3_18600 PF00512 His Kinase A (phospho-acceptor) domain K08M3_18600 PF09308 LuxQ, periplasmic K08M3_18690 PF00072 Response regulator receiver domain K08M3_18690 PF02954 Bacterial regulatory protein, Fis family K08M3_18690 PF00158 Sigma-54 interaction domain K08M3_18700 PF00158 Sigma-54 interaction domain K08M3_18700 PF02954 Bacterial regulatory protein, Fis family K08M3_18700 PF13185 GAF domain K08M3_18740 PF07274 Protein of unknown function (DUF1440) K08M3_18750 PF08495 FIST N domain K08M3_18750 PF00563 EAL domain K08M3_18750 PF10442 FIST C domain K08M3_18750 PF00990 Diguanylate cyclase, GGDEF domain K08M3_18760 PF00072 Response regulator receiver domain K08M3_18760 PF00196 Bacterial regulatory proteins, luxR family K08M3_18830 PF00691 OmpA family K08M3_18830 PF01389 OmpA-like transmembrane domain K08M3_18910 PF01915 Glycosyl hydrolase family 3 C-terminal domain K08M3_18910 PF00933 Glycosyl hydrolase family 3 N terminal domain K08M3_18910 PF14310 Fibronectin type III-like domain K08M3_18920 PF13737 Transposase DDE domain K08M3_18930 PF00072 Response regulator receiver domain K08M3_18930 PF00989 PAS fold K08M3_18930 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_18930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_18930 PF01627 Hpt domain K08M3_18930 PF00512 His Kinase A (phospho-acceptor) domain K08M3_18940 PF00196 Bacterial regulatory proteins, luxR family K08M3_18940 PF00072 Response regulator receiver domain K08M3_18960 PF13737 Transposase DDE domain K08M3_18970 PF00816 H-NS histone family K08M3_19070 PF00857 Isochorismatase family K08M3_19200 PF09905 DNA-binding protein VF530 K08M3_19230 PF13495 Phage integrase, N-terminal SAM-like domain K08M3_19230 PF00589 Phage integrase family K08M3_19260 PF13302 Acetyltransferase (GNAT) domain K08M3_19270 PF00158 Sigma-54 interaction domain K08M3_19270 PF18024 Helix-turn-helix domain K08M3_19280 PF05128 Domain of unknown function (DUF697) K08M3_19290 PF04317 YcjX-like family, DUF463 K08M3_19320 PF00425 chorismate binding enzyme K08M3_19320 PF04715 Anthranilate synthase component I, N terminal region K08M3_19330 PF09308 LuxQ, periplasmic K08M3_19330 PF00072 Response regulator receiver domain K08M3_19330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_19330 PF00512 His Kinase A (phospho-acceptor) domain K08M3_19350 PF00293 NUDIX domain K08M3_19360 PF03222 Tryptophan/tyrosine permease family K08M3_19370 PF03313 Serine dehydratase alpha chain K08M3_19370 PF03315 Serine dehydratase beta chain K08M3_19380 PF00563 EAL domain K08M3_19380 PF04940 Sensors of blue-light using FAD K08M3_19400 PF01242 6-pyruvoyl tetrahydropterin synthase K08M3_19410 PF00672 HAMP domain K08M3_19410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_19410 PF17200 Single Cache domain 2 K08M3_19420 PF00152 tRNA synthetases class II (D, K and N) K08M3_19420 PF01336 OB-fold nucleic acid binding domain K08M3_19440 PF00392 Bacterial regulatory proteins, gntR family K08M3_19440 PF00155 Aminotransferase class I and II K08M3_19470 PF00155 Aminotransferase class I and II K08M3_19510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_19510 PF00672 HAMP domain K08M3_19520 PF02028 BCCT, betaine/carnitine/choline family transporter K08M3_19540 PF00072 Response regulator receiver domain K08M3_19540 PF00196 Bacterial regulatory proteins, luxR family K08M3_19550 PF17200 Single Cache domain 2 K08M3_19550 PF07730 Histidine kinase K08M3_19560 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K08M3_19580 PF03480 Bacterial extracellular solute-binding protein, family 7 K08M3_19610 PF00753 Metallo-beta-lactamase superfamily K08M3_19620 PF05951 Bacterial protein of unknown function (DUF882) K08M3_19630 PF01471 Putative peptidoglycan binding domain K08M3_19630 PF03734 L,D-transpeptidase catalytic domain K08M3_19680 PF00925 GTP cyclohydrolase II K08M3_19700 PF03918 Cytochrome C biogenesis protein K08M3_19710 PF08534 Redoxin K08M3_19720 PF01578 Cytochrome C assembly protein K08M3_19720 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K08M3_19730 PF03916 Polysulphide reductase, NrfD K08M3_19740 PF13247 4Fe-4S dicluster domain K08M3_19760 PF02335 Cytochrome c552 K08M3_19790 PF00521 DNA gyrase/topoisomerase IV, subunit A K08M3_19790 PF03989 DNA gyrase C-terminal domain, beta-propeller K08M3_19810 PF02867 Ribonucleotide reductase, barrel domain K08M3_19810 PF03477 ATP cone domain K08M3_19810 PF00317 Ribonucleotide reductase, all-alpha domain K08M3_19820 PF00268 Ribonucleotide reductase, small chain K08M3_19840 PF00994 Probable molybdopterin binding domain K08M3_19870 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K08M3_19880 PF03435 Saccharopine dehydrogenase NADP binding domain K08M3_19880 PF16653 Saccharopine dehydrogenase C-terminal domain K08M3_19890 PF00202 Aminotransferase class-III K08M3_19940 PF01066 CDP-alcohol phosphatidyltransferase K08M3_19950 PF02151 UvrB/uvrC motif K08M3_19950 PF08459 UvrC Helix-hairpin-helix N-terminal K08M3_19950 PF01541 GIY-YIG catalytic domain K08M3_19960 PF00072 Response regulator receiver domain K08M3_19960 PF00196 Bacterial regulatory proteins, luxR family K08M3_19970 PF03104 DNA polymerase family B, exonuclease domain K08M3_19970 PF00136 DNA polymerase family B K08M3_19990 PF09285 Elongation factor P, C-terminal K08M3_19990 PF08207 Elongation factor P (EF-P) KOW-like domain K08M3_19990 PF01132 Elongation factor P (EF-P) OB domain K08M3_20000 PF04269 Protein of unknown function, DUF440 K08M3_20010 PF01479 S4 domain K08M3_20010 PF00849 RNA pseudouridylate synthase K08M3_20030 PF01300 Telomere recombination K08M3_20040 PF02811 PHP domain K08M3_20050 PF08056 Tryptophan operon leader peptide K08M3_20060 PF00425 chorismate binding enzyme K08M3_20060 PF04715 Anthranilate synthase component I, N terminal region K08M3_20070 PF00117 Glutamine amidotransferase class-I K08M3_20080 PF02885 Glycosyl transferase family, helical bundle domain K08M3_20080 PF00591 Glycosyl transferase family, a/b domain K08M3_20090 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K08M3_20090 PF00218 Indole-3-glycerol phosphate synthase K08M3_20100 PF00291 Pyridoxal-phosphate dependent enzyme K08M3_20110 PF00290 Tryptophan synthase alpha chain K08M3_20120 PF13545 Crp-like helix-turn-helix domain K08M3_20120 PF00027 Cyclic nucleotide-binding domain K08M3_20130 PF00501 AMP-binding enzyme K08M3_20130 PF13193 AMP-binding enzyme C-terminal domain K08M3_20140 PF00375 Sodium:dicarboxylate symporter family K08M3_20150 PF17327 Acyl homoserine lactone synthase K08M3_20160 PF00072 Response regulator receiver domain K08M3_20160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_20180 PF04279 Intracellular septation protein A K08M3_20190 PF03061 Thioesterase superfamily K08M3_20200 PF03795 YCII-related domain K08M3_20220 PF01717 Cobalamin-independent synthase, Catalytic domain K08M3_20220 PF08267 Cobalamin-independent synthase, N-terminal domain K08M3_20230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_20230 PF03466 LysR substrate binding domain K08M3_20260 PF08447 PAS fold K08M3_20260 PF08448 PAS fold K08M3_20260 PF00990 Diguanylate cyclase, GGDEF domain K08M3_20260 PF00563 EAL domain K08M3_20270 PF04055 Radical SAM superfamily K08M3_20270 PF08497 Radical SAM N-terminal K08M3_20270 PF11842 Domain of unknown function (DUF3362) K08M3_20310 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase K08M3_20320 PF00535 Glycosyl transferase family 2 K08M3_20330 PF00072 Response regulator receiver domain K08M3_20330 PF00486 Transcriptional regulatory protein, C terminal K08M3_20340 PF00672 HAMP domain K08M3_20340 PF00512 His Kinase A (phospho-acceptor) domain K08M3_20340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_20370 PF03466 LysR substrate binding domain K08M3_20370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_20380 PF00529 HlyD membrane-fusion protein of T1SS K08M3_20380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_20400 PF08267 Cobalamin-independent synthase, N-terminal domain K08M3_20400 PF01717 Cobalamin-independent synthase, Catalytic domain K08M3_20440 PF00005 ABC transporter K08M3_20440 PF12704 MacB-like periplasmic core domain K08M3_20440 PF02687 FtsX-like permease family K08M3_20450 PF12704 MacB-like periplasmic core domain K08M3_20450 PF00005 ABC transporter K08M3_20450 PF02687 FtsX-like permease family K08M3_20460 PF02687 FtsX-like permease family K08M3_20460 PF00005 ABC transporter K08M3_20460 PF12704 MacB-like periplasmic core domain K08M3_20480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_20510 PF01938 TRAM domain K08M3_20510 PF05958 tRNA (Uracil-5-)-methyltransferase K08M3_20530 PF00085 Thioredoxin K08M3_20540 PF11412 Disulphide bond corrector protein DsbC K08M3_20540 PF02683 Cytochrome C biogenesis protein transmembrane region K08M3_20540 PF13098 Thioredoxin-like domain K08M3_20560 PF00196 Bacterial regulatory proteins, luxR family K08M3_20560 PF00072 Response regulator receiver domain K08M3_20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_20570 PF00512 His Kinase A (phospho-acceptor) domain K08M3_20580 PF13247 4Fe-4S dicluster domain K08M3_20590 PF03916 Polysulphide reductase, NrfD K08M3_20600 PF00384 Molybdopterin oxidoreductase K08M3_20600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K08M3_20600 PF01568 Molydopterin dinucleotide binding domain K08M3_20610 PF00034 Cytochrome c K08M3_20620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K08M3_20630 PF04403 Paraquat-inducible protein A K08M3_20640 PF02470 MlaD protein K08M3_20680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_20690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family K08M3_20700 PF18073 Rubredoxin metal binding domain K08M3_20710 PF06305 Lipopolysaccharide assembly protein A domain K08M3_20720 PF00216 Bacterial DNA-binding protein K08M3_20730 PF00575 S1 RNA binding domain K08M3_20740 PF02224 Cytidylate kinase K08M3_20750 PF01343 Peptidase family S49 K08M3_20750 PF08496 Peptidase family S49 N-terminal K08M3_20760 PF00106 short chain dehydrogenase K08M3_20790 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K08M3_20790 PF07733 Bacterial DNA polymerase III alpha NTPase domain K08M3_20790 PF14579 Helix-hairpin-helix motif K08M3_20790 PF02811 PHP domain K08M3_20790 PF01336 OB-fold nucleic acid binding domain K08M3_20800 PF01584 CheW-like domain K08M3_20800 PF00072 Response regulator receiver domain K08M3_20810 PF00480 ROK family K08M3_20820 PF02887 Pyruvate kinase, alpha/beta domain K08M3_20820 PF00224 Pyruvate kinase, barrel domain K08M3_20830 PF01734 Patatin-like phospholipase K08M3_20860 PF00209 Sodium:neurotransmitter symporter family K08M3_20890 PF02378 Phosphotransferase system, EIIC K08M3_20890 PF00367 phosphotransferase system, EIIB K08M3_20900 PF01026 TatD related DNase K08M3_20910 PF09115 DNA polymerase III, delta subunit, C terminal K08M3_20920 PF02223 Thymidylate kinase K08M3_20930 PF02618 YceG-like family K08M3_20940 PF01063 Amino-transferase class IV K08M3_20950 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M3_20950 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M3_20960 PF00550 Phosphopantetheine attachment site K08M3_20980 PF00698 Acyl transferase domain K08M3_20990 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K08M3_20990 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K08M3_21000 PF02504 Fatty acid synthesis protein K08M3_21010 PF01783 Ribosomal L32p protein family K08M3_21020 PF02620 Large ribosomal RNA subunit accumulation protein YceD K08M3_21030 PF02545 Maf-like protein K08M3_21040 PF01479 S4 domain K08M3_21040 PF00849 RNA pseudouridylate synthase K08M3_21050 PF10150 Ribonuclease E/G family K08M3_21050 PF00575 S1 RNA binding domain K08M3_21050 PF12111 Polyribonucleotide phosphorylase C terminal K08M3_21060 PF01740 STAS domain K08M3_21060 PF00916 Sulfate permease family K08M3_21070 PF01451 Low molecular weight phosphotyrosine protein phosphatase K08M3_21080 PF12557 Cob(I)alamin adenosyltransferase N terminal K08M3_21080 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K08M3_21100 PF00485 Phosphoribulokinase / Uridine kinase family K08M3_21110 PF10609 NUBPL iron-transfer P-loop NTPase K08M3_21120 PF01588 Putative tRNA binding domain K08M3_21120 PF09334 tRNA synthetases class I (M) K08M3_21160 PF00392 Bacterial regulatory proteins, gntR family K08M3_21160 PF07840 FadR C-terminal domain K08M3_21170 PF06450 Bacterial Na+/H+ antiporter B (NhaB) K08M3_21180 PF02600 Disulfide bond formation protein DsbB K08M3_21190 PF03695 Uncharacterised protein family (UPF0149) K08M3_21190 PF02810 SEC-C motif K08M3_21200 PF01207 Dihydrouridine synthase (Dus) K08M3_21210 PF00990 Diguanylate cyclase, GGDEF domain K08M3_21210 PF17158 Membrane-associated sensor, integral membrane domain K08M3_21220 PF02903 Alpha amylase, N-terminal ig-like domain K08M3_21220 PF00128 Alpha amylase, catalytic domain K08M3_21230 PF00005 ABC transporter K08M3_21240 PF02653 Branched-chain amino acid transport system / permease component K08M3_21260 PF04217 Protein of unknown function, DUF412 K08M3_21270 PF00871 Acetokinase family K08M3_21280 PF01515 Phosphate acetyl/butaryl transferase K08M3_21280 PF07085 DRTGG domain K08M3_21300 PF13409 Glutathione S-transferase, N-terminal domain K08M3_21310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_21310 PF00005 ABC transporter K08M3_21320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_21320 PF00005 ABC transporter K08M3_21330 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M3_21330 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_21340 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_21350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_21360 PF02391 MoaE protein K08M3_21370 PF02597 ThiS family K08M3_21380 PF01967 MoaC family K08M3_21390 PF00994 Probable molybdopterin binding domain K08M3_21400 PF04055 Radical SAM superfamily K08M3_21400 PF06463 Molybdenum Cofactor Synthesis C K08M3_21410 PF01933 Uncharacterised protein family UPF0052 K08M3_21420 PF01627 Hpt domain K08M3_21430 PF02954 Bacterial regulatory protein, Fis family K08M3_21430 PF00158 Sigma-54 interaction domain K08M3_21430 PF00072 Response regulator receiver domain K08M3_21440 PF00271 Helicase conserved C-terminal domain K08M3_21440 PF02151 UvrB/uvrC motif K08M3_21440 PF12344 Ultra-violet resistance protein B K08M3_21440 PF17757 UvrB interaction domain K08M3_21440 PF04851 Type III restriction enzyme, res subunit K08M3_21460 PF02901 Pyruvate formate lyase-like K08M3_21460 PF01228 Glycine radical K08M3_21470 PF02508 Rnf-Nqr subunit, membrane protein K08M3_21480 PF04060 Putative Fe-S cluster K08M3_21490 PF10531 SLBB domain K08M3_21490 PF12838 4Fe-4S dicluster domain K08M3_21490 PF13375 RnfC Barrel sandwich hybrid domain K08M3_21490 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit K08M3_21500 PF03116 NQR2, RnfD, RnfE family K08M3_21510 PF04205 FMN-binding domain K08M3_21520 PF02508 Rnf-Nqr subunit, membrane protein K08M3_21530 PF10576 Iron-sulfur binding domain of endonuclease III K08M3_21530 PF00730 HhH-GPD superfamily base excision DNA repair protein K08M3_21530 PF00633 Helix-hairpin-helix motif K08M3_21540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M3_21550 PF10952 Protein of unknown function (DUF2753) K08M3_21560 PF00691 OmpA family K08M3_21560 PF18393 MotY N-terminal domain K08M3_21570 PF00929 Exonuclease K08M3_21580 PF13726 Na+-H+ antiporter family K08M3_21580 PF03553 Na+/H+ antiporter family K08M3_21620 PF00462 Glutaredoxin K08M3_21630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K08M3_21630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K08M3_21660 PF00465 Iron-containing alcohol dehydrogenase K08M3_21660 PF00171 Aldehyde dehydrogenase family K08M3_21670 PF01914 MarC family integral membrane protein K08M3_21680 PF00520 Ion transport protein K08M3_21680 PF00027 Cyclic nucleotide-binding domain K08M3_21690 PF02774 Semialdehyde dehydrogenase, dimerisation domain K08M3_21690 PF01118 Semialdehyde dehydrogenase, NAD binding domain K08M3_21700 PF03553 Na+/H+ antiporter family K08M3_21730 PF04245 37-kD nucleoid-associated bacterial protein K08M3_21740 PF07208 Protein of unknown function (DUF1414) K08M3_21750 PF00884 Sulfatase K08M3_21750 PF11893 Domain of unknown function (DUF3413) K08M3_21770 PF00850 Histone deacetylase domain K08M3_21780 PF00106 short chain dehydrogenase K08M3_21800 PF01751 Toprim domain K08M3_21800 PF01131 DNA topoisomerase K08M3_21810 PF00881 Nitroreductase family K08M3_21830 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_21830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M3_21840 PF01343 Peptidase family S49 K08M3_21850 PF00710 Asparaginase, N-terminal K08M3_21850 PF17763 Glutaminase/Asparaginase C-terminal domain K08M3_21860 PF07023 Protein of unknown function (DUF1315) K08M3_21880 PF01641 SelR domain K08M3_21890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K08M3_21890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M3_21900 PF01263 Aldose 1-epimerase K08M3_21910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_21910 PF13426 PAS domain K08M3_21910 PF08447 PAS fold K08M3_21920 PF13847 Methyltransferase domain K08M3_21950 PF00245 Alkaline phosphatase K08M3_21970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M3_21980 PF03992 Antibiotic biosynthesis monooxygenase K08M3_21990 PF00924 Mechanosensitive ion channel K08M3_21990 PF05552 Conserved TM helix K08M3_22000 PF03692 Putative zinc- or iron-chelating domain K08M3_22010 PF04226 Transglycosylase associated protein K08M3_22020 PF03692 Putative zinc- or iron-chelating domain K08M3_22030 PF00230 Major intrinsic protein K08M3_22040 PF13662 Toprim domain K08M3_22040 PF02132 RecR protein K08M3_22050 PF02575 YbaB/EbfC DNA-binding family K08M3_22060 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding K08M3_22060 PF12170 DNA polymerase III tau subunit V interacting with alpha K08M3_22060 PF12169 DNA polymerase III subunits gamma and tau domain III K08M3_22070 PF00156 Phosphoribosyl transferase domain K08M3_22080 PF04304 Protein of unknown function (DUF454) K08M3_22100 PF00072 Response regulator receiver domain K08M3_22110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_22110 PF03466 LysR substrate binding domain K08M3_22120 PF00156 Phosphoribosyl transferase domain K08M3_22130 PF02674 Colicin V production protein K08M3_22140 PF05036 Sporulation related domain K08M3_22150 PF02875 Mur ligase family, glutamate ligase domain K08M3_22150 PF08245 Mur ligase middle domain K08M3_22160 PF01039 Carboxyl transferase domain K08M3_22160 PF17848 Acetyl-coA carboxylase zinc finger domain K08M3_22170 PF01416 tRNA pseudouridine synthase K08M3_22190 PF02774 Semialdehyde dehydrogenase, dimerisation domain K08M3_22190 PF01118 Semialdehyde dehydrogenase, NAD binding domain K08M3_22200 PF11890 Domain of unknown function (DUF3410) K08M3_22200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M3_22200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K08M3_22210 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M3_22210 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M3_22220 PF01266 FAD dependent oxidoreductase K08M3_22220 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K08M3_22230 PF03358 NADPH-dependent FMN reductase K08M3_22240 PF08891 YfcL protein K08M3_22250 PF04315 Elongation factor P hydroxylase K08M3_22260 PF03458 UPF0126 domain K08M3_22270 PF01264 Chorismate synthase K08M3_22280 PF05175 Methyltransferase small domain K08M3_22290 PF01713 Smr domain K08M3_22300 PF00300 Histidine phosphatase superfamily (branch 1) K08M3_22310 PF16187 Middle or third domain of peptidase_M16 K08M3_22310 PF05193 Peptidase M16 inactive domain K08M3_22310 PF00675 Insulinase (Peptidase family M16) K08M3_22330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K08M3_22330 PF00378 Enoyl-CoA hydratase/isomerase K08M3_22330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K08M3_22340 PF00108 Thiolase, N-terminal domain K08M3_22340 PF02803 Thiolase, C-terminal domain K08M3_22360 PF08281 Sigma-70, region 4 K08M3_22360 PF04542 Sigma-70 region 2 K08M3_22380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K08M3_22390 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K08M3_22420 PF04333 MlaA lipoprotein K08M3_22430 PF03918 Cytochrome C biogenesis protein K08M3_22440 PF03918 Cytochrome C biogenesis protein K08M3_22450 PF08534 Redoxin K08M3_22460 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K08M3_22460 PF01578 Cytochrome C assembly protein K08M3_22470 PF03100 CcmE K08M3_22480 PF04995 Heme exporter protein D (CcmD) K08M3_22490 PF01578 Cytochrome C assembly protein K08M3_22500 PF03379 CcmB protein K08M3_22510 PF00005 ABC transporter K08M3_22530 PF01584 CheW-like domain K08M3_22550 PF13614 AAA domain K08M3_22560 PF00072 Response regulator receiver domain K08M3_22560 PF01339 CheB methylesterase K08M3_22570 PF07194 P2 response regulator binding domain K08M3_22570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_22570 PF02895 Signal transducing histidine kinase, homodimeric domain K08M3_22570 PF01584 CheW-like domain K08M3_22570 PF01627 Hpt domain K08M3_22580 PF04344 Chemotaxis phosphatase, CheZ K08M3_22590 PF00072 Response regulator receiver domain K08M3_22600 PF04542 Sigma-70 region 2 K08M3_22600 PF04539 Sigma-70 region 3 K08M3_22600 PF04545 Sigma-70, region 4 K08M3_22610 PF10609 NUBPL iron-transfer P-loop NTPase K08M3_22620 PF00448 SRP54-type protein, GTPase domain K08M3_22630 PF00771 FHIPEP family K08M3_22640 PF01312 FlhB HrpN YscU SpaS Family K08M3_22650 PF01311 Bacterial export proteins, family 1 K08M3_22660 PF01313 Bacterial export proteins, family 3 K08M3_22670 PF00813 FliP family K08M3_22680 PF04347 Flagellar biosynthesis protein, FliO K08M3_22690 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K08M3_22700 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K08M3_22700 PF02154 Flagellar motor switch protein FliM K08M3_22750 PF18269 T3SS EscN ATPase C-terminal domain K08M3_22750 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M3_22770 PF01706 FliG C-terminal domain K08M3_22770 PF14841 FliG middle domain K08M3_22770 PF14842 FliG N-terminal domain K08M3_22780 PF08345 Flagellar M-ring protein C-terminal K08M3_22780 PF01514 Secretory protein of YscJ/FliF family K08M3_22790 PF02049 Flagellar hook-basal body complex protein FliE K08M3_22800 PF02954 Bacterial regulatory protein, Fis family K08M3_22800 PF00072 Response regulator receiver domain K08M3_22800 PF00158 Sigma-54 interaction domain K08M3_22810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_22810 PF00512 His Kinase A (phospho-acceptor) domain K08M3_22820 PF00158 Sigma-54 interaction domain K08M3_22820 PF00072 Response regulator receiver domain K08M3_22820 PF02954 Bacterial regulatory protein, Fis family K08M3_22830 PF02561 Flagellar protein FliS K08M3_22850 PF07195 Flagellar hook-associated protein 2 C-terminus K08M3_22850 PF07196 Flagellin hook IN motif K08M3_22850 PF02465 Flagellar hook-associated protein 2 N-terminus K08M3_22860 PF03646 FlaG protein K08M3_22870 PF00669 Bacterial flagellin N-terminal helical region K08M3_22870 PF07196 Flagellin hook IN motif K08M3_22870 PF00700 Bacterial flagellin C-terminal helical region K08M3_22880 PF00669 Bacterial flagellin N-terminal helical region K08M3_22880 PF07196 Flagellin hook IN motif K08M3_22880 PF00700 Bacterial flagellin C-terminal helical region K08M3_22890 PF00669 Bacterial flagellin N-terminal helical region K08M3_22890 PF07196 Flagellin hook IN motif K08M3_22890 PF00700 Bacterial flagellin C-terminal helical region K08M3_22900 PF04261 Dyp-type peroxidase family K08M3_22910 PF11143 Protein of unknown function (DUF2919) K08M3_22950 PF03960 ArsC family K08M3_22960 PF07687 Peptidase dimerisation domain K08M3_22960 PF01546 Peptidase family M20/M25/M40 K08M3_23000 PF00701 Dihydrodipicolinate synthetase family K08M3_23020 PF00578 AhpC/TSA family K08M3_23070 PF00578 AhpC/TSA family K08M3_23090 PF02910 Fumarate reductase flavoprotein C-term K08M3_23090 PF00890 FAD binding domain K08M3_23100 PF00005 ABC transporter K08M3_23100 PF03412 Peptidase C39 family K08M3_23100 PF00664 ABC transporter transmembrane region K08M3_23110 PF00529 HlyD membrane-fusion protein of T1SS K08M3_23110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_23150 PF00535 Glycosyl transferase family 2 K08M3_23200 PF02954 Bacterial regulatory protein, Fis family K08M3_23220 PF00580 UvrD/REP helicase N-terminal domain K08M3_23220 PF13361 UvrD-like helicase C-terminal domain K08M3_23250 PF09308 LuxQ, periplasmic K08M3_23250 PF00072 Response regulator receiver domain K08M3_23250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_23250 PF00512 His Kinase A (phospho-acceptor) domain K08M3_23260 PF01527 Transposase K08M3_23290 PF00313 'Cold-shock' DNA-binding domain K08M3_23340 PF00313 'Cold-shock' DNA-binding domain K08M3_23350 PF02899 Phage integrase, N-terminal SAM-like domain K08M3_23350 PF00589 Phage integrase family K08M3_23360 PF12221 Bacterial membrane protein N terminal K08M3_23360 PF01145 SPFH domain / Band 7 family K08M3_23380 PF06965 Na+/H+ antiporter 1 K08M3_23390 PF00330 Aconitase family (aconitate hydratase) K08M3_23390 PF00694 Aconitase C-terminal domain K08M3_23400 PF00313 'Cold-shock' DNA-binding domain K08M3_23430 PF00578 AhpC/TSA family K08M3_23440 PF01594 AI-2E family transporter K08M3_23460 PF13181 Tetratricopeptide repeat K08M3_23460 PF01435 Peptidase family M48 K08M3_23470 PF03960 ArsC family K08M3_23480 PF03358 NADPH-dependent FMN reductase K08M3_23510 PF00860 Permease family K08M3_23530 PF00586 AIR synthase related protein, N-terminal domain K08M3_23530 PF02769 AIR synthase related protein, C-terminal domain K08M3_23540 PF00551 Formyl transferase K08M3_23560 PF13230 Glutamine amidotransferases class-II K08M3_23570 PF13580 SIS domain K08M3_23580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K08M3_23580 PF02770 Acyl-CoA dehydrogenase, middle domain K08M3_23580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K08M3_23580 PF09317 Domain of unknown function (DUF1974) K08M3_23590 PF01740 STAS domain K08M3_23590 PF00916 Sulfate permease family K08M3_23640 PF00929 Exonuclease K08M3_23650 PF00075 RNase H K08M3_23660 PF08241 Methyltransferase domain K08M3_23670 PF00753 Metallo-beta-lactamase superfamily K08M3_23670 PF16123 Hydroxyacylglutathione hydrolase C-terminus K08M3_23680 PF01464 Transglycosylase SLT domain K08M3_23680 PF01476 LysM domain K08M3_23700 PF03372 Endonuclease/Exonuclease/phosphatase family K08M3_23710 PF00543 Nitrogen regulatory protein P-II K08M3_23720 PF00034 Cytochrome c K08M3_23730 PF09179 TilS substrate binding domain K08M3_23730 PF01171 PP-loop family K08M3_23730 PF11734 TilS substrate C-terminal domain K08M3_23740 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit K08M3_23750 PF07733 Bacterial DNA polymerase III alpha NTPase domain K08M3_23750 PF01336 OB-fold nucleic acid binding domain K08M3_23750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K08M3_23750 PF02811 PHP domain K08M3_23750 PF14579 Helix-hairpin-helix motif K08M3_23760 PF01351 Ribonuclease HII K08M3_23770 PF02684 Lipid-A-disaccharide synthetase K08M3_23780 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 K08M3_23780 PF00132 Bacterial transferase hexapeptide (six repeats) K08M3_23790 PF07977 FabA-like domain K08M3_23800 PF00132 Bacterial transferase hexapeptide (six repeats) K08M3_23800 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K08M3_23810 PF03938 Outer membrane protein (OmpH-like) K08M3_23820 PF01103 Surface antigen K08M3_23820 PF07244 Surface antigen variable number repeat K08M3_23830 PF17820 PDZ domain K08M3_23830 PF02163 Peptidase family M50 K08M3_23840 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain K08M3_23840 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase K08M3_23840 PF13288 DXP reductoisomerase C-terminal domain K08M3_23860 PF01255 Putative undecaprenyl diphosphate synthase K08M3_23870 PF01765 Ribosome recycling factor K08M3_23880 PF00696 Amino acid kinase family K08M3_23890 PF00889 Elongation factor TS K08M3_23900 PF00318 Ribosomal protein S2 K08M3_23910 PF00557 Metallopeptidase family M24 K08M3_23920 PF01909 Nucleotidyltransferase domain K08M3_23920 PF01842 ACT domain K08M3_23920 PF08335 GlnD PII-uridylyltransferase K08M3_23920 PF01966 HD domain K08M3_23930 PF11944 Protein of unknown function (DUF3461) K08M3_23940 PF00849 RNA pseudouridylate synthase K08M3_23950 PF04287 tRNA pseudouridine synthase C K08M3_24000 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 K08M3_24010 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K08M3_24010 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K08M3_24020 PF01370 NAD dependent epimerase/dehydratase family K08M3_24070 PF03806 AbgT putative transporter family K08M3_24080 PF01197 Ribosomal protein L31 K08M3_24090 PF18389 TrmO C-terminal domain K08M3_24090 PF01980 tRNA-methyltransferase O K08M3_24100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K08M3_24100 PF03129 Anticodon binding domain K08M3_24100 PF04073 Aminoacyl-tRNA editing domain K08M3_24120 PF06786 Uncharacterised protein family (UPF0253) K08M3_24140 PF00209 Sodium:neurotransmitter symporter family K08M3_24150 PF06483 Chitinase C K08M3_24150 PF00704 Glycosyl hydrolases family 18 K08M3_24170 PF01272 Transcription elongation factor, GreA/GreB, C-term K08M3_24170 PF03449 Transcription elongation factor, N-terminal K08M3_24180 PF00271 Helicase conserved C-terminal domain K08M3_24180 PF00270 DEAD/DEAH box helicase K08M3_24180 PF09382 RQC domain K08M3_24180 PF16124 RecQ zinc-binding K08M3_24180 PF00570 HRDC domain K08M3_24230 PF11798 IMS family HHH motif K08M3_24230 PF00817 impB/mucB/samB family K08M3_24230 PF11799 impB/mucB/samB family C-terminal domain K08M3_24390 PF01740 STAS domain K08M3_24390 PF00916 Sulfate permease family K08M3_24400 PF00582 Universal stress protein family K08M3_24410 PF13673 Acetyltransferase (GNAT) domain K08M3_24410 PF00958 GMP synthase C terminal domain K08M3_24410 PF13302 Acetyltransferase (GNAT) domain K08M3_24410 PF03352 Methyladenine glycosylase K08M3_24410 PF00117 Glutamine amidotransferase class-I K08M3_24510 PF11799 impB/mucB/samB family C-terminal domain K08M3_24510 PF11798 IMS family HHH motif K08M3_24510 PF00817 impB/mucB/samB family K08M3_24530 PF00990 Diguanylate cyclase, GGDEF domain K08M3_24530 PF00072 Response regulator receiver domain K08M3_24550 PF02424 ApbE family K08M3_24560 PF00175 Oxidoreductase NAD-binding domain K08M3_24560 PF00970 Oxidoreductase FAD-binding domain K08M3_24560 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M3_24570 PF02508 Rnf-Nqr subunit, membrane protein K08M3_24580 PF02508 Rnf-Nqr subunit, membrane protein K08M3_24590 PF04205 FMN-binding domain K08M3_24600 PF03116 NQR2, RnfD, RnfE family K08M3_24610 PF11973 NQRA C-terminal domain K08M3_24610 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) K08M3_24620 PF01722 BolA-like protein K08M3_24630 PF05175 Methyltransferase small domain K08M3_24640 PF03923 Uncharacterized lipoprotein K08M3_24640 PF08139 Prokaryotic membrane lipoprotein lipid attachment site K08M3_24650 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K08M3_24660 PF07690 Major Facilitator Superfamily K08M3_24680 PF04545 Sigma-70, region 4 K08M3_24680 PF04542 Sigma-70 region 2 K08M3_24710 PF03502 Nucleoside-specific channel-forming protein, Tsx K08M3_24720 PF02558 Ketopantoate reductase PanE/ApbA K08M3_24720 PF08546 Ketopantoate reductase PanE/ApbA C terminal K08M3_24730 PF01965 DJ-1/PfpI family K08M3_24740 PF00266 Aminotransferase class-V K08M3_24750 PF00990 Diguanylate cyclase, GGDEF domain K08M3_24750 PF17158 Membrane-associated sensor, integral membrane domain K08M3_24760 PF02657 Fe-S metabolism associated domain K08M3_24770 PF00899 ThiF family K08M3_24780 PF03562 MltA specific insert domain K08M3_24780 PF06725 3D domain K08M3_24800 PF00696 Amino acid kinase family K08M3_24800 PF00583 Acetyltransferase (GNAT) family K08M3_24820 PF13538 UvrD-like helicase C-terminal domain K08M3_24830 PF00580 UvrD/REP helicase N-terminal domain K08M3_24830 PF12705 PD-(D/E)XK nuclease superfamily K08M3_24830 PF13361 UvrD-like helicase C-terminal domain K08M3_24840 PF17946 RecC C-terminal domain K08M3_24850 PF08676 MutL C terminal dimerisation domain K08M3_24850 PF01119 DNA mismatch repair protein, C-terminal domain K08M3_24910 PF00665 Integrase core domain K08M3_24920 PF01527 Transposase K08M3_24940 PF00145 C-5 cytosine-specific DNA methylase K08M3_24950 PF00145 C-5 cytosine-specific DNA methylase K08M3_24960 PF00884 Sulfatase K08M3_24960 PF11893 Domain of unknown function (DUF3413) K08M3_24980 PF03466 LysR substrate binding domain K08M3_24980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_24990 PF07130 YebG protein K08M3_25020 PF14602 Hexapeptide repeat of succinyl-transferase K08M3_25020 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle K08M3_25030 PF03009 Glycerophosphoryl diester phosphodiesterase family K08M3_25040 PF07690 Major Facilitator Superfamily K08M3_25050 PF00230 Major intrinsic protein K08M3_25060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain K08M3_25060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain K08M3_25070 PF00455 DeoR C terminal sensor domain K08M3_25070 PF08220 DeoR-like helix-turn-helix domain K08M3_25080 PF16901 C-terminal domain of alpha-glycerophosphate oxidase K08M3_25080 PF01266 FAD dependent oxidoreductase K08M3_25090 PF01544 CorA-like Mg2+ transporter protein K08M3_25130 PF00356 Bacterial regulatory proteins, lacI family K08M3_25140 PF03466 LysR substrate binding domain K08M3_25140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_25160 PF00196 Bacterial regulatory proteins, luxR family K08M3_25220 PF00501 AMP-binding enzyme K08M3_25240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_25240 PF03466 LysR substrate binding domain K08M3_25250 PF00679 Elongation factor G C-terminus K08M3_25250 PF14492 Elongation Factor G, domain II K08M3_25250 PF03764 Elongation factor G, domain IV K08M3_25250 PF03144 Elongation factor Tu domain 2 K08M3_25250 PF00009 Elongation factor Tu GTP binding domain K08M3_25260 PF18073 Rubredoxin metal binding domain K08M3_25280 PF18429 Domain of unknown function (DUF5609) K08M3_25300 PF01048 Phosphorylase superfamily K08M3_25310 PF01676 Metalloenzyme superfamily K08M3_25320 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain K08M3_25320 PF00591 Glycosyl transferase family, a/b domain K08M3_25320 PF02885 Glycosyl transferase family, helical bundle domain K08M3_25330 PF01791 DeoC/LacD family aldolase K08M3_25340 PF07670 Nucleoside recognition K08M3_25340 PF07662 Na+ dependent nucleoside transporter C-terminus K08M3_25340 PF01773 Na+ dependent nucleoside transporter N-terminus K08M3_25350 PF01026 TatD related DNase K08M3_25370 PF16658 Class II release factor RF3, C-terminal domain K08M3_25370 PF00009 Elongation factor Tu GTP binding domain K08M3_25370 PF03144 Elongation factor Tu domain 2 K08M3_25410 PF13508 Acetyltransferase (GNAT) domain K08M3_25430 PF00990 Diguanylate cyclase, GGDEF domain K08M3_25430 PF03707 Bacterial signalling protein N terminal repeat K08M3_25430 PF00563 EAL domain K08M3_25460 PF01554 MatE K08M3_25480 PF07719 Tetratricopeptide repeat K08M3_25480 PF13181 Tetratricopeptide repeat K08M3_25490 PF00575 S1 RNA binding domain K08M3_25490 PF01138 3' exoribonuclease family, domain 1 K08M3_25490 PF00013 KH domain K08M3_25490 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain K08M3_25490 PF03725 3' exoribonuclease family, domain 2 K08M3_25500 PF00312 Ribosomal protein S15 K08M3_25510 PF09157 Pseudouridine synthase II TruB, C-terminal K08M3_25510 PF16198 tRNA pseudouridylate synthase B C-terminal domain K08M3_25510 PF01509 TruB family pseudouridylate synthase (N terminal domain) K08M3_25520 PF02033 Ribosome-binding factor A K08M3_25530 PF04760 Translation initiation factor IF-2, N-terminal region K08M3_25530 PF11987 Translation-initiation factor 2 K08M3_25530 PF00009 Elongation factor Tu GTP binding domain K08M3_25530 PF08364 Bacterial translation initiation factor IF-2 associated region K08M3_25540 PF13184 NusA-like KH domain K08M3_25540 PF08529 NusA N-terminal domain K08M3_25540 PF00575 S1 RNA binding domain K08M3_25550 PF17384 RimP C-terminal SH3 domain K08M3_25550 PF02576 RimP N-terminal domain K08M3_25580 PF03840 Preprotein translocase SecG subunit K08M3_25590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K08M3_25590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K08M3_25590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K08M3_25590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K08M3_25600 PF00809 Pterin binding enzyme K08M3_25610 PF00004 ATPase family associated with various cellular activities (AAA) K08M3_25610 PF06480 FtsH Extracellular K08M3_25610 PF01434 Peptidase family M41 K08M3_25610 PF17862 AAA+ lid domain K08M3_25620 PF01728 FtsJ-like methyltransferase K08M3_25630 PF01985 CRS1 / YhbY (CRM) domain K08M3_25640 PF03449 Transcription elongation factor, N-terminal K08M3_25640 PF01272 Transcription elongation factor, GreA/GreB, C-term K08M3_25650 PF13609 Gram-negative porin K08M3_25660 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family K08M3_25680 PF00579 tRNA synthetases class I (W and Y) K08M3_25690 PF08525 Opacity-associated protein A N-terminal motif K08M3_25690 PF01551 Peptidase family M23 K08M3_25690 PF01476 LysM domain K08M3_25700 PF00873 AcrB/AcrD/AcrF family K08M3_25720 PF01521 Iron-sulphur cluster biosynthesis K08M3_25730 PF00202 Aminotransferase class-III K08M3_25740 PF01594 AI-2E family transporter K08M3_25750 PF05175 Methyltransferase small domain K08M3_25750 PF08468 Methyltransferase small domain N-terminal K08M3_25760 PF00072 Response regulator receiver domain K08M3_25760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_25760 PF09308 LuxQ, periplasmic K08M3_25760 PF00512 His Kinase A (phospho-acceptor) domain K08M3_25770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_25780 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_25790 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_25790 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M3_25800 PF00005 ABC transporter K08M3_25800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_25810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_25810 PF00005 ABC transporter K08M3_25830 PF01869 BadF/BadG/BcrA/BcrD ATPase family K08M3_25840 PF02838 Glycosyl hydrolase family 20, domain 2 K08M3_25840 PF00728 Glycosyl hydrolase family 20, catalytic domain K08M3_25850 PF06165 Glycosyltransferase family 36 K08M3_25850 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain K08M3_25860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K08M3_25860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K08M3_25860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K08M3_25860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K08M3_25870 PF00005 ABC transporter K08M3_25870 PF08402 TOBE domain K08M3_25890 PF13416 Bacterial extracellular solute-binding protein K08M3_25900 PF00909 Ammonium Transporter Family K08M3_25910 PF00543 Nitrogen regulatory protein P-II K08M3_25920 PF06062 Uncharacterised protein family (UPF0231) K08M3_25930 PF00330 Aconitase family (aconitate hydratase) K08M3_25930 PF06434 Aconitate hydratase 2 N-terminus K08M3_25930 PF11791 Aconitate B N-terminal domain K08M3_25940 PF01734 Patatin-like phospholipase K08M3_25950 PF14814 Bifunctional transglycosylase second domain K08M3_25950 PF00905 Penicillin binding protein transpeptidase domain K08M3_25950 PF00912 Transglycosylase K08M3_25960 PF00270 DEAD/DEAH box helicase K08M3_25960 PF00271 Helicase conserved C-terminal domain K08M3_25960 PF08482 ATP-dependent helicase C-terminal K08M3_25960 PF04408 Helicase associated domain (HA2) K08M3_25970 PF17746 SfsA N-terminal OB domain K08M3_25970 PF03749 Sugar fermentation stimulation protein RE domain K08M3_25980 PF01258 Prokaryotic dksA/traR C4-type zinc finger K08M3_25990 PF00749 tRNA synthetases class I (E and Q), catalytic domain K08M3_26000 PF01743 Poly A polymerase head domain K08M3_26000 PF12626 Polymerase A arginine-rich C-terminus K08M3_26000 PF12627 Probable RNA and SrmB- binding site of polymerase A K08M3_26010 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K08M3_26020 PF02548 Ketopantoate hydroxymethyltransferase K08M3_26030 PF02569 Pantoate-beta-alanine ligase K08M3_26040 PF03279 Bacterial lipid A biosynthesis acyltransferase K08M3_26050 PF01061 ABC-2 type transporter K08M3_26060 PF00005 ABC transporter K08M3_26070 PF01740 STAS domain K08M3_26070 PF00916 Sulfate permease family K08M3_26080 PF00484 Carbonic anhydrase K08M3_26090 PF00156 Phosphoribosyl transferase domain K08M3_26100 PF00440 Bacterial regulatory proteins, tetR family K08M3_26110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M3_26110 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_26120 PF02817 e3 binding domain K08M3_26120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K08M3_26120 PF00364 Biotin-requiring enzyme K08M3_26130 PF17831 Pyruvate dehydrogenase E1 component middle domain K08M3_26130 PF00456 Transketolase, thiamine diphosphate binding domain K08M3_26140 PF00392 Bacterial regulatory proteins, gntR family K08M3_26140 PF07729 FCD domain K08M3_26150 PF01510 N-acetylmuramoyl-L-alanine amidase K08M3_26160 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain K08M3_26160 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain K08M3_26170 PF00114 Pilin (bacterial filament) K08M3_26170 PF07963 Prokaryotic N-terminal methylation motif K08M3_26180 PF00437 Type II/IV secretion system protein K08M3_26180 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K08M3_26190 PF00482 Type II secretion system (T2SS), protein F K08M3_26200 PF06750 Bacterial Peptidase A24 N-terminal domain K08M3_26200 PF01478 Type IV leader peptidase family K08M3_26210 PF01121 Dephospho-CoA kinase K08M3_26220 PF07072 Cell division protein K08M3_26230 PF03884 DNA gyrase inhibitor YacG K08M3_26240 PF01245 Ribosomal protein L19 K08M3_26250 PF01746 tRNA (Guanine-1)-methyltransferase K08M3_26260 PF01782 RimM N-terminal domain K08M3_26260 PF05239 PRC-barrel domain K08M3_26270 PF00886 Ribosomal protein S16 K08M3_26280 PF02978 Signal peptide binding domain K08M3_26280 PF02881 SRP54-type protein, helical bundle domain K08M3_26280 PF00448 SRP54-type protein, GTPase domain K08M3_26290 PF01578 Cytochrome C assembly protein K08M3_26300 PF00571 CBS domain K08M3_26300 PF03471 Transporter associated domain K08M3_26300 PF01595 Cyclin M transmembrane N-terminal domain K08M3_26310 PF02664 S-Ribosylhomocysteinase (LuxS) K08M3_26330 PF04262 Glutamate-cysteine ligase K08M3_26340 PF00675 Insulinase (Peptidase family M16) K08M3_26340 PF05193 Peptidase M16 inactive domain K08M3_26350 PF09335 SNARE associated Golgi protein K08M3_26370 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit K08M3_26380 PF02436 Conserved carboxylase domain K08M3_26380 PF00682 HMGL-like K08M3_26380 PF00364 Biotin-requiring enzyme K08M3_26390 PF04277 Oxaloacetate decarboxylase, gamma chain K08M3_26500 PF02599 Global regulator protein family K08M3_26510 PF13840 ACT domain K08M3_26510 PF01842 ACT domain K08M3_26510 PF00696 Amino acid kinase family K08M3_26520 PF01411 tRNA synthetases class II (A) K08M3_26520 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K08M3_26520 PF02272 DHHA1 domain K08M3_26530 PF02631 RecX family K08M3_26540 PF00154 recA bacterial DNA recombination protein K08M3_26550 PF02464 Competence-damaged protein K08M3_26560 PF05188 MutS domain II K08M3_26560 PF01624 MutS domain I K08M3_26560 PF05192 MutS domain III K08M3_26560 PF05190 MutS family domain IV K08M3_26560 PF00488 MutS domain V K08M3_26570 PF04539 Sigma-70 region 3 K08M3_26570 PF00140 Sigma-70 factor, region 1.2 K08M3_26570 PF04545 Sigma-70, region 4 K08M3_26570 PF04542 Sigma-70 region 2 K08M3_26580 PF01476 LysM domain K08M3_26580 PF01551 Peptidase family M23 K08M3_26600 PF01975 Survival protein SurE K08M3_26610 PF01142 tRNA pseudouridine synthase D (TruD) K08M3_26620 PF02542 YgbB family K08M3_26630 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K08M3_26640 PF04977 Septum formation initiator K08M3_26650 PF03952 Enolase, N-terminal domain K08M3_26650 PF00113 Enolase, C-terminal TIM barrel domain K08M3_26660 PF00117 Glutamine amidotransferase class-I K08M3_26660 PF06418 CTP synthase N-terminus K08M3_26670 PF03819 MazG nucleotide pyrophosphohydrolase domain K08M3_26690 PF04607 Region found in RelA / SpoT proteins K08M3_26690 PF02824 TGS domain K08M3_26690 PF13291 ACT domain K08M3_26700 PF01938 TRAM domain K08M3_26700 PF05958 tRNA (Uracil-5-)-methyltransferase K08M3_26710 PF00512 His Kinase A (phospho-acceptor) domain K08M3_26710 PF00072 Response regulator receiver domain K08M3_26710 PF01627 Hpt domain K08M3_26710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_26710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K08M3_26710 PF00672 HAMP domain K08M3_26720 PF01648 4'-phosphopantetheinyl transferase superfamily K08M3_26730 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ K08M3_26740 PF02565 Recombination protein O C terminal K08M3_26740 PF11967 Recombination protein O N terminal K08M3_26750 PF01926 50S ribosome-binding GTPase K08M3_26750 PF07650 KH domain K08M3_26760 PF14622 Ribonuclease-III-like K08M3_26760 PF00035 Double-stranded RNA binding motif K08M3_26770 PF10502 Signal peptidase, peptidase S26 K08M3_26780 PF03144 Elongation factor Tu domain 2 K08M3_26780 PF00009 Elongation factor Tu GTP binding domain K08M3_26780 PF00679 Elongation factor G C-terminus K08M3_26780 PF06421 GTP-binding protein LepA C-terminus K08M3_26800 PF17188 MucB/RseB C-terminal domain K08M3_26800 PF03888 MucB/RseB N-terminal domain K08M3_26810 PF03873 Anti sigma-E protein RseA, C-terminal domain K08M3_26810 PF03872 Anti sigma-E protein RseA, N-terminal domain K08M3_26820 PF08281 Sigma-70, region 4 K08M3_26820 PF04542 Sigma-70 region 2 K08M3_26830 PF00890 FAD binding domain K08M3_26830 PF02910 Fumarate reductase flavoprotein C-term K08M3_26850 PF03937 Flavinator of succinate dehydrogenase K08M3_26890 PF01494 FAD binding domain K08M3_26900 PF01494 FAD binding domain K08M3_26910 PF03695 Uncharacterised protein family (UPF0149) K08M3_26920 PF05164 Cell division protein ZapA K08M3_26930 PF01812 5-formyltetrahydrofolate cyclo-ligase family K08M3_26940 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) K08M3_26950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M3_26950 PF01842 ACT domain K08M3_26950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K08M3_26960 PF04402 Protein of unknown function (DUF541) K08M3_26970 PF03466 LysR substrate binding domain K08M3_26970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_26980 PF01810 LysE type translocator K08M3_27000 PF00924 Mechanosensitive ion channel K08M3_27000 PF05552 Conserved TM helix K08M3_27010 PF01116 Fructose-bisphosphate aldolase class-II K08M3_27020 PF00162 Phosphoglycerate kinase K08M3_27030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K08M3_27030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M3_27040 PF00593 TonB dependent receptor K08M3_27040 PF07715 TonB-dependent Receptor Plug Domain K08M3_27050 PF03466 LysR substrate binding domain K08M3_27050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_27060 PF00456 Transketolase, thiamine diphosphate binding domain K08M3_27060 PF02780 Transketolase, C-terminal domain K08M3_27060 PF02779 Transketolase, pyrimidine binding domain K08M3_27070 PF00438 S-adenosylmethionine synthetase, N-terminal domain K08M3_27070 PF02772 S-adenosylmethionine synthetase, central domain K08M3_27070 PF02773 S-adenosylmethionine synthetase, C-terminal domain K08M3_27090 PF17283 SprT-like zinc ribbon domain K08M3_27090 PF10263 SprT-like family K08M3_27100 PF04231 Endonuclease I K08M3_27110 PF04452 RNA methyltransferase K08M3_27120 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain K08M3_27120 PF02951 Prokaryotic glutathione synthetase, N-terminal domain K08M3_27130 PF02622 Uncharacterized ACR, COG1678 K08M3_27140 PF03652 Holliday junction resolvase K08M3_27150 PF00437 Type II/IV secretion system protein K08M3_27160 PF00437 Type II/IV secretion system protein K08M3_27170 PF01168 Alanine racemase, N-terminal domain K08M3_27180 PF14748 Pyrroline-5-carboxylate reductase dimerisation K08M3_27180 PF03807 NADP oxidoreductase coenzyme F420-dependent K08M3_27190 PF02325 YGGT family K08M3_27200 PF02594 Uncharacterised ACR, YggU family COG1872 K08M3_27220 PF01725 Ham1 family K08M3_27230 PF06969 HemN C-terminal domain K08M3_27230 PF04055 Radical SAM superfamily K08M3_27240 PF04960 Glutaminase K08M3_27250 PF02086 D12 class N6 adenine-specific DNA methyltransferase K08M3_27260 PF02390 Putative methyltransferase K08M3_27270 PF00633 Helix-hairpin-helix motif K08M3_27270 PF14815 NUDIX domain K08M3_27270 PF00730 HhH-GPD superfamily base excision DNA repair protein K08M3_27280 PF04362 Bacterial Fe(2+) trafficking K08M3_27290 PF01464 Transglycosylase SLT domain K08M3_27290 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain K08M3_27370 PF00672 HAMP domain K08M3_27370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_27370 PF17200 Single Cache domain 2 K08M3_27430 PF00171 Aldehyde dehydrogenase family K08M3_27540 PF04794 YdjC-like protein K08M3_27550 PF11975 Family 4 glycosyl hydrolase C-terminal domain K08M3_27550 PF02056 Family 4 glycosyl hydrolase K08M3_27560 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit K08M3_27570 PF02378 Phosphotransferase system, EIIC K08M3_27580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K08M3_27590 PF01522 Polysaccharide deacetylase K08M3_27620 PF10011 Predicted membrane protein (DUF2254) K08M3_27640 PF03739 Lipopolysaccharide export system permease LptF/LptG K08M3_27650 PF03739 Lipopolysaccharide export system permease LptF/LptG K08M3_27660 PF02789 Cytosol aminopeptidase family, N-terminal domain K08M3_27660 PF00883 Cytosol aminopeptidase family, catalytic domain K08M3_27670 PF04364 DNA polymerase III chi subunit, HolC K08M3_27680 PF00133 tRNA synthetases class I (I, L, M and V) K08M3_27680 PF10458 Valyl tRNA synthetase tRNA binding arm K08M3_27680 PF08264 Anticodon-binding domain of tRNA K08M3_27700 PF00583 Acetyltransferase (GNAT) family K08M3_27720 PF06877 Regulator of ribonuclease activity B K08M3_27740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K08M3_27740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K08M3_27760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K08M3_27760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K08M3_27770 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain K08M3_27770 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain K08M3_27780 PF01042 Endoribonuclease L-PSP K08M3_27790 PF01553 Acyltransferase K08M3_27800 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) K08M3_27810 PF01722 BolA-like protein K08M3_27830 PF05494 MlaC protein K08M3_27840 PF02470 MlaD protein K08M3_27850 PF02405 Permease MlaE K08M3_27860 PF00005 ABC transporter K08M3_27870 PF01699 Sodium/calcium exchanger protein K08M3_27880 PF01380 SIS domain K08M3_27880 PF00571 CBS domain K08M3_27900 PF03968 OstA-like protein K08M3_27910 PF00005 ABC transporter K08M3_27910 PF12399 Branched-chain amino acid ATP-binding cassette transporter K08M3_27920 PF04963 Sigma-54 factor, core binding domain K08M3_27920 PF04552 Sigma-54, DNA binding domain K08M3_27920 PF00309 Sigma-54 factor, Activator interacting domain (AID) K08M3_27930 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K08M3_27940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M3_27950 PF03668 P-loop ATPase protein family K08M3_27960 PF00381 PTS HPr component phosphorylation site K08M3_27970 PF00571 CBS domain K08M3_27970 PF03448 MgtE intracellular N domain K08M3_27970 PF01769 Divalent cation transporter K08M3_27980 PF01523 Putative modulator of DNA gyrase K08M3_27990 PF04751 Protein of unknown function (DUF615) K08M3_28000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M3_28000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K08M3_28010 PF00849 RNA pseudouridylate synthase K08M3_28030 PF00271 Helicase conserved C-terminal domain K08M3_28030 PF00176 SNF2 family N-terminal domain K08M3_28030 PF18339 RapA N-terminal Tudor like domain 1 K08M3_28030 PF12137 RNA polymerase recycling family C-terminal K08M3_28030 PF18337 RapA N-terminal Tudor like domain K08M3_28040 PF13638 PIN domain K08M3_28040 PF02562 PhoH-like protein K08M3_28050 PF01523 Putative modulator of DNA gyrase K08M3_28060 PF00795 Carbon-nitrogen hydrolase K08M3_28070 PF13502 AsmA-like C-terminal region K08M3_28070 PF13116 Protein of unknown function K08M3_28080 PF00575 S1 RNA binding domain K08M3_28080 PF10150 Ribonuclease E/G family K08M3_28090 PF02545 Maf-like protein K08M3_28100 PF04093 rod shape-determining protein MreD K08M3_28110 PF04085 rod shape-determining protein MreC K08M3_28190 PF07963 Prokaryotic N-terminal methylation motif K08M3_28190 PF08334 Type II secretion system (T2SS), protein G K08M3_28210 PF00482 Type II secretion system (T2SS), protein F K08M3_28220 PF00437 Type II/IV secretion system protein K08M3_28240 PF01471 Putative peptidoglycan binding domain K08M3_28240 PF13401 AAA domain K08M3_28250 PF03958 Bacterial type II/III secretion system short domain K08M3_28250 PF00263 Bacterial type II and III secretion system protein K08M3_28290 PF00563 EAL domain K08M3_28290 PF00990 Diguanylate cyclase, GGDEF domain K08M3_28290 PF17157 Gammaproteobacterial periplasmic sensor domain K08M3_28300 PF00436 Single-strand binding protein family K08M3_28310 PF00196 Bacterial regulatory proteins, luxR family K08M3_28320 PF00483 Nucleotidyl transferase K08M3_28330 PF00005 ABC transporter K08M3_28330 PF17760 UvrA interaction domain K08M3_28330 PF17755 UvrA DNA-binding domain K08M3_28370 PF00266 Aminotransferase class-V K08M3_28380 PF01842 ACT domain K08M3_28380 PF00696 Amino acid kinase family K08M3_28390 PF02607 B12 binding domain K08M3_28390 PF02965 Vitamin B12 dependent methionine synthase, activation domain K08M3_28390 PF00809 Pterin binding enzyme K08M3_28390 PF02574 Homocysteine S-methyltransferase K08M3_28390 PF02310 B12 binding domain K08M3_28400 PF00999 Sodium/hydrogen exchanger family K08M3_28520 PF01507 Phosphoadenosine phosphosulfate reductase family K08M3_28530 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K08M3_28530 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M3_28540 PF00175 Oxidoreductase NAD-binding domain K08M3_28540 PF00258 Flavodoxin K08M3_28540 PF00667 FAD binding domain K08M3_28580 PF01207 Dihydrouridine synthase (Dus) K08M3_28590 PF01475 Ferric uptake regulator family K08M3_28610 PF00342 Phosphoglucose isomerase K08M3_28620 PF01894 Uncharacterised protein family UPF0047 K08M3_28630 PF00842 Alanine racemase, C-terminal domain K08M3_28630 PF01168 Alanine racemase, N-terminal domain K08M3_28640 PF00772 DnaB-like helicase N terminal domain K08M3_28640 PF03796 DnaB-like helicase C terminal domain K08M3_28660 PF01281 Ribosomal protein L9, N-terminal domain K08M3_28660 PF03948 Ribosomal protein L9, C-terminal domain K08M3_28670 PF01084 Ribosomal protein S18 K08M3_28680 PF00436 Single-strand binding protein family K08M3_28690 PF01250 Ribosomal protein S6 K08M3_28700 PF00834 Ribulose-phosphate 3 epimerase family K08M3_28710 PF02086 D12 class N6 adenine-specific DNA methyltransferase K08M3_28730 PF01761 3-dehydroquinate synthase K08M3_28740 PF01202 Shikimate kinase K08M3_28750 PF07660 Secretin and TonB N terminus short domain K08M3_28750 PF00263 Bacterial type II and III secretion system protein K08M3_28750 PF11741 AMIN domain K08M3_28750 PF03958 Bacterial type II/III secretion system short domain K08M3_28800 PF17092 Penicillin-binding protein OB-like domain K08M3_28800 PF00912 Transglycosylase K08M3_28800 PF00905 Penicillin binding protein transpeptidase domain K08M3_28810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_28810 PF03466 LysR substrate binding domain K08M3_28820 PF00462 Glutaredoxin K08M3_28820 PF08534 Redoxin K08M3_28830 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_28830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M3_28860 PF00583 Acetyltransferase (GNAT) family K08M3_28860 PF14698 Argininosuccinate lyase C-terminal K08M3_28860 PF00206 Lyase K08M3_28870 PF00764 Arginosuccinate synthase K08M3_28880 PF00696 Amino acid kinase family K08M3_28890 PF02774 Semialdehyde dehydrogenase, dimerisation domain K08M3_28890 PF01118 Semialdehyde dehydrogenase, NAD binding domain K08M3_28900 PF07687 Peptidase dimerisation domain K08M3_28900 PF01546 Peptidase family M20/M25/M40 K08M3_28910 PF00311 Phosphoenolpyruvate carboxylase K08M3_28930 PF02219 Methylenetetrahydrofolate reductase K08M3_28940 PF00742 Homoserine dehydrogenase K08M3_28940 PF03447 Homoserine dehydrogenase, NAD binding domain K08M3_28940 PF00696 Amino acid kinase family K08M3_28950 PF01053 Cys/Met metabolism PLP-dependent enzyme K08M3_28970 PF00390 Malic enzyme, N-terminal domain K08M3_28970 PF03949 Malic enzyme, NAD binding domain K08M3_28980 PF00210 Ferritin-like domain K08M3_28990 PF04324 BFD-like [2Fe-2S] binding domain K08M3_29000 PF03144 Elongation factor Tu domain 2 K08M3_29000 PF03143 Elongation factor Tu C-terminal domain K08M3_29000 PF00009 Elongation factor Tu GTP binding domain K08M3_29010 PF03764 Elongation factor G, domain IV K08M3_29010 PF00679 Elongation factor G C-terminus K08M3_29010 PF14492 Elongation Factor G, domain II K08M3_29010 PF03144 Elongation factor Tu domain 2 K08M3_29010 PF00009 Elongation factor Tu GTP binding domain K08M3_29020 PF00177 Ribosomal protein S7p/S5e K08M3_29030 PF00164 Ribosomal protein S12/S23 K08M3_29040 PF04077 DsrH like protein K08M3_29050 PF02635 DsrE/DsrF-like family K08M3_29060 PF02635 DsrE/DsrF-like family K08M3_29070 PF08348 YheO-like PAS domain K08M3_29070 PF13309 HTH domain K08M3_29080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K08M3_29080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M3_29100 PF04102 SlyX K08M3_29110 PF01112 Asparaginase K08M3_29120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M3_29140 PF00999 Sodium/hydrogen exchanger family K08M3_29140 PF02254 TrkA-N domain K08M3_29150 PF02525 Flavodoxin-like fold K08M3_29160 PF00005 ABC transporter K08M3_29160 PF12848 ABC transporter K08M3_29180 PF00561 alpha/beta hydrolase fold K08M3_29190 PF06794 Uncharacterised protein family (UPF0270) K08M3_29200 PF00485 Phosphoribulokinase / Uridine kinase family K08M3_29210 PF00027 Cyclic nucleotide-binding domain K08M3_29210 PF13545 Crp-like helix-turn-helix domain K08M3_29230 PF00171 Aldehyde dehydrogenase family K08M3_29240 PF04958 Arginine N-succinyltransferase beta subunit K08M3_29250 PF00202 Aminotransferase class-III K08M3_29260 PF00117 Glutamine amidotransferase class-I K08M3_29290 PF00579 tRNA synthetases class I (W and Y) K08M3_29300 PF13419 Haloacid dehalogenase-like hydrolase K08M3_29310 PF00588 SpoU rRNA Methylase family K08M3_29310 PF08032 RNA 2'-O ribose methyltransferase substrate binding K08M3_29320 PF00575 S1 RNA binding domain K08M3_29320 PF00773 RNB domain K08M3_29320 PF08206 Ribonuclease B OB domain K08M3_29320 PF08461 Ribonuclease R winged-helix domain K08M3_29320 PF17876 Cold shock domain K08M3_29330 PF02082 Transcriptional regulator K08M3_29340 PF00042 Globin K08M3_29340 PF00175 Oxidoreductase NAD-binding domain K08M3_29340 PF00970 Oxidoreductase FAD-binding domain K08M3_29350 PF08238 Sel1 repeat K08M3_29360 PF00709 Adenylosuccinate synthetase K08M3_29370 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) K08M3_29380 PF01145 SPFH domain / Band 7 family K08M3_29390 PF12221 Bacterial membrane protein N terminal K08M3_29390 PF01145 SPFH domain / Band 7 family K08M3_29400 PF16360 GTP-binding GTPase Middle Region K08M3_29400 PF01926 50S ribosome-binding GTPase K08M3_29400 PF13167 GTP-binding GTPase N-terminal K08M3_29410 PF17209 Hfq protein K08M3_29430 PF01119 DNA mismatch repair protein, C-terminal domain K08M3_29430 PF08676 MutL C terminal dimerisation domain K08M3_29440 PF01520 N-acetylmuramoyl-L-alanine amidase K08M3_29450 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE K08M3_29470 PF08331 Domain of unknown function (DUF1730) K08M3_29600 PF00929 Exonuclease K08M3_29610 PF03193 RsgA GTPase K08M3_29620 PF02666 Phosphatidylserine decarboxylase K08M3_29630 PF00939 Sodium:sulfate symporter transmembrane region K08M3_29650 PF01676 Metalloenzyme superfamily K08M3_29650 PF06415 BPG-independent PGAM N-terminus (iPGM_N) K08M3_29660 PF00581 Rhodanese-like domain K08M3_29670 PF02556 Preprotein translocase subunit SecB K08M3_29680 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K08M3_29680 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K08M3_29690 PF00132 Bacterial transferase hexapeptide (six repeats) K08M3_29690 PF06426 Serine acetyltransferase, N-terminal K08M3_29700 PF01551 Peptidase family M23 K08M3_29720 PF00440 Bacterial regulatory proteins, tetR family K08M3_29720 PF08360 QacR-like protein, C-terminal region K08M3_29740 PF00152 tRNA synthetases class II (D, K and N) K08M3_29750 PF02910 Fumarate reductase flavoprotein C-term K08M3_29750 PF00890 FAD binding domain K08M3_29760 PF13183 4Fe-4S dicluster domain K08M3_29760 PF13085 2Fe-2S iron-sulfur cluster binding domain K08M3_29770 PF02300 Fumarate reductase subunit C K08M3_29780 PF02313 Fumarate reductase subunit D K08M3_29800 PF01132 Elongation factor P (EF-P) OB domain K08M3_29800 PF09285 Elongation factor P, C-terminal K08M3_29800 PF08207 Elongation factor P (EF-P) KOW-like domain K08M3_29810 PF04055 Radical SAM superfamily K08M3_29820 PF02308 MgtC family K08M3_29840 PF00118 TCP-1/cpn60 chaperonin family K08M3_29850 PF00166 Chaperonin 10 Kd subunit K08M3_29860 PF01554 MatE K08M3_29870 PF00365 Phosphofructokinase K08M3_29880 PF16916 Dimerisation domain of Zinc Transporter K08M3_29880 PF01545 Cation efflux family K08M3_29890 PF07813 LTXXQ motif family protein K08M3_29900 PF00072 Response regulator receiver domain K08M3_29900 PF00486 Transcriptional regulatory protein, C terminal K08M3_29910 PF00512 His Kinase A (phospho-acceptor) domain K08M3_29910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_29910 PF00672 HAMP domain K08M3_29910 PF16527 Two-component sensor protein CpxA, periplasmic domain K08M3_29920 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K08M3_29920 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K08M3_29930 PF00588 SpoU rRNA Methylase family K08M3_29940 PF04186 FxsA cytoplasmic membrane protein K08M3_29950 PF10415 Fumarase C C-terminus K08M3_29950 PF00206 Lyase K08M3_29960 PF03605 Anaerobic c4-dicarboxylate membrane transporter K08M3_29970 PF02683 Cytochrome C biogenesis protein transmembrane region K08M3_29970 PF11412 Disulphide bond corrector protein DsbC K08M3_29980 PF00196 Bacterial regulatory proteins, luxR family K08M3_29980 PF00072 Response regulator receiver domain K08M3_29990 PF02080 TrkA-C domain K08M3_29990 PF03471 Transporter associated domain K08M3_29990 PF00999 Sodium/hydrogen exchanger family K08M3_30010 PF00474 Sodium:solute symporter family K08M3_30040 PF00206 Lyase K08M3_30040 PF10415 Fumarase C C-terminus K08M3_30050 PF00072 Response regulator receiver domain K08M3_30050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_30050 PF09308 LuxQ, periplasmic K08M3_30050 PF00512 His Kinase A (phospho-acceptor) domain K08M3_30060 PF12832 MFS_1 like family K08M3_30090 PF16177 Acetyl-coenzyme A synthetase N-terminus K08M3_30090 PF13193 AMP-binding enzyme C-terminal domain K08M3_30090 PF00501 AMP-binding enzyme K08M3_30100 PF01220 Dehydroquinase class II K08M3_30110 PF00364 Biotin-requiring enzyme K08M3_30120 PF02785 Biotin carboxylase C-terminal domain K08M3_30120 PF00289 Biotin carboxylase, N-terminal domain K08M3_30120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K08M3_30140 PF01207 Dihydrouridine synthase (Dus) K08M3_30150 PF02954 Bacterial regulatory protein, Fis family K08M3_30170 PF00005 ABC transporter K08M3_30170 PF12848 ABC transporter K08M3_30270 PF01276 Orn/Lys/Arg decarboxylase, major domain K08M3_30270 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain K08M3_30270 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain K08M3_30280 PF13520 Amino acid permease K08M3_30290 PF00486 Transcriptional regulatory protein, C terminal K08M3_30290 PF18500 CadC C-terminal domain 1 K08M3_30300 PF13411 MerR HTH family regulatory protein K08M3_30310 PF01808 AICARFT/IMPCHase bienzyme K08M3_30310 PF02142 MGS-like domain K08M3_30320 PF02843 Phosphoribosylglycinamide synthetase, C domain K08M3_30320 PF02844 Phosphoribosylglycinamide synthetase, N domain K08M3_30320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K08M3_30340 PF00216 Bacterial DNA-binding protein K08M3_30350 PF00571 CBS domain K08M3_30350 PF01595 Cyclin M transmembrane N-terminal domain K08M3_30360 PF04222 Protein of unknown function (DUF416) K08M3_30370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M3_30380 PF03167 Uracil DNA glycosylase superfamily K08M3_30390 PF01208 Uroporphyrinogen decarboxylase (URO-D) K08M3_30400 PF00293 NUDIX domain K08M3_30400 PF09297 NADH pyrophosphatase zinc ribbon domain K08M3_30410 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ K08M3_30420 PF04998 RNA polymerase Rpb1, domain 5 K08M3_30420 PF05000 RNA polymerase Rpb1, domain 4 K08M3_30420 PF04997 RNA polymerase Rpb1, domain 1 K08M3_30420 PF00623 RNA polymerase Rpb1, domain 2 K08M3_30420 PF04983 RNA polymerase Rpb1, domain 3 K08M3_30430 PF10385 RNA polymerase beta subunit external 1 domain K08M3_30430 PF04565 RNA polymerase Rpb2, domain 3 K08M3_30430 PF04561 RNA polymerase Rpb2, domain 2 K08M3_30430 PF04563 RNA polymerase beta subunit K08M3_30430 PF04560 RNA polymerase Rpb2, domain 7 K08M3_30430 PF00562 RNA polymerase Rpb2, domain 6 K08M3_30440 PF00542 Ribosomal protein L7/L12 C-terminal domain K08M3_30440 PF16320 Ribosomal protein L7/L12 dimerisation domain K08M3_30450 PF00466 Ribosomal protein L10 K08M3_30460 PF00687 Ribosomal protein L1p/L10e family K08M3_30470 PF00298 Ribosomal protein L11, RNA binding domain K08M3_30470 PF03946 Ribosomal protein L11, N-terminal domain K08M3_30480 PF00467 KOW motif K08M3_30480 PF02357 Transcription termination factor nusG K08M3_30490 PF00584 SecE/Sec61-gamma subunits of protein translocation complex K08M3_30500 PF03143 Elongation factor Tu C-terminal domain K08M3_30500 PF03144 Elongation factor Tu domain 2 K08M3_30500 PF00009 Elongation factor Tu GTP binding domain K08M3_30550 PF00485 Phosphoribulokinase / Uridine kinase family K08M3_30560 PF08279 HTH domain K08M3_30560 PF03099 Biotin/lipoate A/B protein ligase family K08M3_30560 PF02237 Biotin protein ligase C terminal domain K08M3_30570 PF01565 FAD binding domain K08M3_30570 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K08M3_30590 PF13091 PLD-like domain K08M3_30740 PF01177 Asp/Glu/Hydantoin racemase K08M3_30760 PF07715 TonB-dependent Receptor Plug Domain K08M3_30760 PF00593 TonB dependent receptor K08M3_30770 PF05958 tRNA (Uracil-5-)-methyltransferase K08M3_30790 PF00440 Bacterial regulatory proteins, tetR family K08M3_30800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M3_30800 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_30810 PF01554 MatE K08M3_30820 PF04072 Leucine carboxyl methyltransferase K08M3_30830 PF00717 Peptidase S24-like K08M3_30830 PF01726 LexA DNA binding domain K08M3_30840 PF01553 Acyltransferase K08M3_30850 PF01040 UbiA prenyltransferase family K08M3_30860 PF04345 Chorismate lyase K08M3_30870 PF03748 Flagellar basal body-associated protein FliL K08M3_30880 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease K08M3_30880 PF01694 Rhomboid family K08M3_30890 PF00581 Rhodanese-like domain K08M3_30900 PF04545 Sigma-70, region 4 K08M3_30900 PF04542 Sigma-70 region 2 K08M3_30900 PF00140 Sigma-70 factor, region 1.2 K08M3_30910 PF18075 FtsX extracellular domain K08M3_30920 PF00005 ABC transporter K08M3_30930 PF02881 SRP54-type protein, helical bundle domain K08M3_30930 PF00448 SRP54-type protein, GTPase domain K08M3_30960 PF01914 MarC family integral membrane protein K08M3_31000 PF10694 Protein of unknown function (DUF2500) K08M3_31040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M3_31040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K08M3_31050 PF01022 Bacterial regulatory protein, arsR family K08M3_31060 PF08668 HDOD domain K08M3_31060 PF00563 EAL domain K08M3_31070 PF01810 LysE type translocator K08M3_31080 PF12146 Serine aminopeptidase, S33 K08M3_31130 PF00563 EAL domain K08M3_31130 PF00990 Diguanylate cyclase, GGDEF domain K08M3_31130 PF10442 FIST C domain K08M3_31130 PF08495 FIST N domain K08M3_31140 PF13419 Haloacid dehalogenase-like hydrolase K08M3_31150 PF00589 Phage integrase family K08M3_31150 PF02899 Phage integrase, N-terminal SAM-like domain K08M3_31170 PF01678 Diaminopimelate epimerase K08M3_31180 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K08M3_31180 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K08M3_31190 PF01491 Frataxin-like domain K08M3_31200 PF01295 Adenylate cyclase, class-I K08M3_31200 PF12633 Adenylate cyclase NT domain K08M3_31210 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain K08M3_31210 PF03900 Porphobilinogen deaminase, C-terminal domain K08M3_31220 PF02602 Uroporphyrinogen-III synthase HemD K08M3_31230 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase K08M3_31240 PF07219 HemY protein N-terminus K08M3_31320 PF00175 Oxidoreductase NAD-binding domain K08M3_31330 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M3_31340 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K08M3_31360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M3_31360 PF07498 Rho termination factor, N-terminal domain K08M3_31360 PF07497 Rho termination factor, RNA-binding domain K08M3_31370 PF00085 Thioredoxin K08M3_31380 PF00271 Helicase conserved C-terminal domain K08M3_31380 PF00270 DEAD/DEAH box helicase K08M3_31390 PF02541 Ppx/GppA phosphatase family K08M3_31410 PF02592 Putative vitamin uptake transporter K08M3_31430 PF00270 DEAD/DEAH box helicase K08M3_31430 PF00271 Helicase conserved C-terminal domain K08M3_31430 PF00570 HRDC domain K08M3_31430 PF16124 RecQ zinc-binding K08M3_31430 PF09382 RQC domain K08M3_31440 PF00892 EamA-like transporter family K08M3_31460 PF01810 LysE type translocator K08M3_31480 PF00580 UvrD/REP helicase N-terminal domain K08M3_31480 PF13361 UvrD-like helicase C-terminal domain K08M3_31500 PF05114 Protein of unknown function (DUF692) K08M3_31540 PF07690 Major Facilitator Superfamily K08M3_31550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_31550 PF03466 LysR substrate binding domain K08M3_31560 PF00557 Metallopeptidase family M24 K08M3_31560 PF01321 Creatinase/Prolidase N-terminal domain K08M3_31560 PF01321 Creatinase/Prolidase N-terminal domain K08M3_31560 PF00557 Metallopeptidase family M24 K08M3_31570 PF04055 Radical SAM superfamily K08M3_31570 PF06968 Biotin and Thiamin Synthesis associated domain K08M3_31580 PF05690 Thiazole biosynthesis protein ThiG K08M3_31590 PF02597 ThiS family K08M3_31600 PF00899 ThiF family K08M3_31610 PF02581 Thiamine monophosphate synthase K08M3_31620 PF13667 ThiC-associated domain K08M3_31620 PF01964 Radical SAM ThiC family K08M3_31630 PF02537 CrcB-like protein, Camphor Resistance (CrcB) K08M3_31640 PF07732 Multicopper oxidase K08M3_31640 PF07731 Multicopper oxidase K08M3_31640 PF00394 Multicopper oxidase K08M3_31740 PF00132 Bacterial transferase hexapeptide (six repeats) K08M3_31750 PF07369 Protein of unknown function (DUF1488) K08M3_31760 PF18317 Shikimate 5'-dehydrogenase C-terminal domain K08M3_31760 PF01488 Shikimate / quinate 5-dehydrogenase K08M3_31760 PF08501 Shikimate dehydrogenase substrate binding domain K08M3_31770 PF01218 Coproporphyrinogen III oxidase K08M3_31780 PF01300 Telomere recombination K08M3_31790 PF00731 AIR carboxylase K08M3_31800 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain K08M3_31800 PF02222 ATP-grasp domain K08M3_31810 PF01396 Topoisomerase DNA binding C4 zinc finger K08M3_31820 PF04361 Protein of unknown function (DUF494) K08M3_31830 PF17782 DprA winged helix domain K08M3_31830 PF02481 DNA recombination-mediator protein A K08M3_31850 PF01327 Polypeptide deformylase K08M3_31860 PF02911 Formyl transferase, C-terminal domain K08M3_31860 PF00551 Formyl transferase K08M3_31870 PF01029 NusB family K08M3_31870 PF01189 16S rRNA methyltransferase RsmB/F K08M3_31880 PF02254 TrkA-N domain K08M3_31880 PF02080 TrkA-C domain K08M3_31890 PF02386 Cation transport protein K08M3_31910 PF03006 Haemolysin-III related K08M3_31920 PF07070 SpoOM protein K08M3_31940 PF06288 Protein of unknown function (DUF1040) K08M3_31950 PF13746 4Fe-4S dicluster domain K08M3_31950 PF12801 4Fe-4S binding domain K08M3_31950 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase K08M3_31960 PF01636 Phosphotransferase enzyme family K08M3_31970 PF01323 DSBA-like thioredoxin domain K08M3_31980 PF01553 Acyltransferase K08M3_32000 PF01078 Magnesium chelatase, subunit ChlI K08M3_32000 PF13335 Magnesium chelatase, subunit ChlI C-terminal K08M3_32010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K08M3_32010 PF00205 Thiamine pyrophosphate enzyme, central domain K08M3_32010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K08M3_32030 PF01063 Amino-transferase class IV K08M3_32040 PF00920 Dehydratase family K08M3_32050 PF00291 Pyridoxal-phosphate dependent enzyme K08M3_32050 PF00585 C-terminal regulatory domain of Threonine dehydratase K08M3_32060 PF03466 LysR substrate binding domain K08M3_32060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_32070 PF07690 Major Facilitator Superfamily K08M3_32080 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_32090 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_32100 PF12804 MobA-like NTP transferase domain K08M3_32100 PF00132 Bacterial transferase hexapeptide (six repeats) K08M3_32120 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain K08M3_32120 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain K08M3_32130 PF02874 ATP synthase alpha/beta family, beta-barrel domain K08M3_32130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M3_32140 PF00231 ATP synthase K08M3_32150 PF02874 ATP synthase alpha/beta family, beta-barrel domain K08M3_32150 PF00306 ATP synthase alpha/beta chain, C terminal domain K08M3_32150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M3_32160 PF00213 ATP synthase delta (OSCP) subunit K08M3_32170 PF00430 ATP synthase B/B' CF(0) K08M3_32180 PF00137 ATP synthase subunit C K08M3_32190 PF00119 ATP synthase A chain K08M3_32200 PF03899 ATP synthase I chain K08M3_32210 PF02195 ParB-like nuclease domain K08M3_32210 PF17762 HTH domain found in ParB protein K08M3_32220 PF13614 AAA domain K08M3_32230 PF02527 rRNA small subunit methyltransferase G K08M3_32240 PF01134 Glucose inhibited division protein A K08M3_32240 PF13932 GidA associated domain K08M3_32250 PF00258 Flavodoxin K08M3_32260 PF01926 50S ribosome-binding GTPase K08M3_32260 PF12631 MnmE helical domain K08M3_32260 PF10396 GTP-binding protein TrmE N-terminus K08M3_32270 PF02096 60Kd inner membrane protein K08M3_32270 PF14849 YidC periplasmic domain K08M3_32280 PF00825 Ribonuclease P K08M3_32290 PF00468 Ribosomal protein L34 K08M3_32300 PF00005 ABC transporter K08M3_32310 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_32320 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_32330 PF13614 AAA domain K08M3_32330 PF18607 ParA helix turn helix domain K08M3_32340 PF02195 ParB-like nuclease domain K08M3_32340 PF08775 ParB family K08M3_32350 PF13718 GNAT acetyltransferase 2 K08M3_32350 PF05127 Helicase K08M3_32370 PF00132 Bacterial transferase hexapeptide (six repeats) K08M3_32380 PF03466 LysR substrate binding domain K08M3_32380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_32390 PF03575 Peptidase family S51 K08M3_32400 PF00267 Gram-negative porin K08M3_32410 PF02378 Phosphotransferase system, EIIC K08M3_32410 PF00367 phosphotransferase system, EIIB K08M3_32420 PF01380 SIS domain K08M3_32430 PF01418 Helix-turn-helix domain, rpiR family K08M3_32430 PF01380 SIS domain K08M3_32440 PF00246 Zinc carboxypeptidase K08M3_32450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_32460 PF03358 NADPH-dependent FMN reductase K08M3_32490 PF03412 Peptidase C39 family K08M3_32490 PF00664 ABC transporter transmembrane region K08M3_32490 PF00005 ABC transporter K08M3_32520 PF00529 HlyD membrane-fusion protein of T1SS K08M3_32530 PF02954 Bacterial regulatory protein, Fis family K08M3_32530 PF00072 Response regulator receiver domain K08M3_32530 PF00158 Sigma-54 interaction domain K08M3_32540 PF02743 Cache domain K08M3_32540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_32540 PF00512 His Kinase A (phospho-acceptor) domain K08M3_32550 PF01243 Pyridoxamine 5'-phosphate oxidase K08M3_32550 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region K08M3_32570 PF12833 Helix-turn-helix domain K08M3_32580 PF00171 Aldehyde dehydrogenase family K08M3_32580 PF18327 Proline utilization A proline dehydrogenase N-terminal domain K08M3_32580 PF01619 Proline dehydrogenase K08M3_32580 PF14850 DNA-binding domain of Proline dehydrogenase K08M3_32600 PF00474 Sodium:solute symporter family K08M3_32660 PF01037 Lrp/AsnC ligand binding domain K08M3_32680 PF00664 ABC transporter transmembrane region K08M3_32680 PF00005 ABC transporter K08M3_32700 PF00271 Helicase conserved C-terminal domain K08M3_32700 PF00270 DEAD/DEAH box helicase K08M3_32710 PF03475 3-alpha domain K08M3_32710 PF03473 MOSC domain K08M3_32750 PF04542 Sigma-70 region 2 K08M3_32750 PF08281 Sigma-70, region 4 K08M3_32760 PF12833 Helix-turn-helix domain K08M3_32760 PF01965 DJ-1/PfpI family K08M3_32770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_32770 PF03466 LysR substrate binding domain K08M3_32800 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_32800 PF13192 Thioredoxin domain K08M3_32810 PF10417 C-terminal domain of 1-Cys peroxiredoxin K08M3_32810 PF00578 AhpC/TSA family K08M3_32890 PF01047 MarR family K08M3_32900 PF02566 OsmC-like protein K08M3_32920 PF12833 Helix-turn-helix domain K08M3_32980 PF00005 ABC transporter K08M3_33030 PF02378 Phosphotransferase system, EIIC K08M3_33030 PF00367 phosphotransferase system, EIIB K08M3_33040 PF00072 Response regulator receiver domain K08M3_33040 PF00486 Transcriptional regulatory protein, C terminal K08M3_33050 PF08521 Two-component sensor kinase N-terminal K08M3_33050 PF00512 His Kinase A (phospho-acceptor) domain K08M3_33050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_33060 PF01547 Bacterial extracellular solute-binding protein K08M3_33070 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K08M3_33070 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K08M3_33080 PF04183 IucA / IucC family K08M3_33080 PF06276 Ferric iron reductase FhuF-like transporter K08M3_33100 PF04183 IucA / IucC family K08M3_33100 PF06276 Ferric iron reductase FhuF-like transporter K08M3_33110 PF00206 Lyase K08M3_33110 PF02655 ATP-grasp domain K08M3_33120 PF00593 TonB dependent receptor K08M3_33120 PF07715 TonB-dependent Receptor Plug Domain K08M3_33130 PF00593 TonB dependent receptor K08M3_33130 PF07715 TonB-dependent Receptor Plug Domain K08M3_33130 PF07660 Secretin and TonB N terminus short domain K08M3_33140 PF01497 Periplasmic binding protein K08M3_33150 PF01032 FecCD transport family K08M3_33160 PF01032 FecCD transport family K08M3_33170 PF00005 ABC transporter K08M3_33180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_33180 PF17200 Single Cache domain 2 K08M3_33180 PF00672 HAMP domain K08M3_33190 PF05193 Peptidase M16 inactive domain K08M3_33190 PF00675 Insulinase (Peptidase family M16) K08M3_33210 PF01551 Peptidase family M23 K08M3_33210 PF04225 Opacity-associated protein A LysM-like domain K08M3_33240 PF07690 Major Facilitator Superfamily K08M3_33250 PF00239 Resolvase, N terminal domain K08M3_33250 PF02796 Helix-turn-helix domain of resolvase K08M3_33260 PF00356 Bacterial regulatory proteins, lacI family K08M3_33270 PF00474 Sodium:solute symporter family K08M3_33300 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K08M3_33320 PF03480 Bacterial extracellular solute-binding protein, family 7 K08M3_33330 PF00356 Bacterial regulatory proteins, lacI family K08M3_33340 PF03328 HpcH/HpaI aldolase/citrate lyase family K08M3_33380 PF00561 alpha/beta hydrolase fold K08M3_33410 PF07690 Major Facilitator Superfamily K08M3_33420 PF00474 Sodium:solute symporter family K08M3_33430 PF03315 Serine dehydratase beta chain K08M3_33430 PF03313 Serine dehydratase alpha chain K08M3_33440 PF00128 Alpha amylase, catalytic domain K08M3_33440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K08M3_33450 PF02264 LamB porin K08M3_33480 PF02903 Alpha amylase, N-terminal ig-like domain K08M3_33480 PF00128 Alpha amylase, catalytic domain K08M3_33480 PF16657 Maltogenic Amylase, C-terminal domain K08M3_33490 PF04231 Endonuclease I K08M3_33500 PF11852 Domain of unknown function (DUF3372) K08M3_33500 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K08M3_33500 PF17967 Pullulanase N2 domain K08M3_33500 PF03714 Bacterial pullanase-associated domain K08M3_33500 PF18494 Pullulanase Ins domain K08M3_33530 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain K08M3_33530 PF01276 Orn/Lys/Arg decarboxylase, major domain K08M3_33530 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain K08M3_33540 PF13520 Amino acid permease K08M3_33560 PF08543 Phosphomethylpyrimidine kinase K08M3_33570 PF00375 Sodium:dicarboxylate symporter family K08M3_33580 PF03193 RsgA GTPase K08M3_33590 PF02378 Phosphotransferase system, EIIC K08M3_33590 PF00367 phosphotransferase system, EIIB K08M3_33600 PF02630 SCO1/SenC K08M3_33630 PF00196 Bacterial regulatory proteins, luxR family K08M3_33630 PF17874 MalT-like TPR region K08M3_33640 PF00343 Carbohydrate phosphorylase K08M3_33650 PF02446 4-alpha-glucanotransferase K08M3_33660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K08M3_33660 PF02806 Alpha amylase, C-terminal all-beta domain K08M3_33660 PF00128 Alpha amylase, catalytic domain K08M3_33670 PF00912 Transglycosylase K08M3_33680 PF00128 Alpha amylase, catalytic domain K08M3_33700 PF07670 Nucleoside recognition K08M3_33710 PF07670 Nucleoside recognition K08M3_33720 PF01546 Peptidase family M20/M25/M40 K08M3_33720 PF07687 Peptidase dimerisation domain K08M3_33730 PF06803 Protein of unknown function (DUF1232) K08M3_33740 PF00375 Sodium:dicarboxylate symporter family K08M3_33760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_33760 PF03466 LysR substrate binding domain K08M3_33770 PF08803 Putative mono-oxygenase ydhR K08M3_33790 PF02706 Chain length determinant protein K08M3_33790 PF13614 AAA domain K08M3_33790 PF13807 G-rich domain on putative tyrosine kinase K08M3_33800 PF01451 Low molecular weight phosphotyrosine protein phosphatase K08M3_33810 PF18412 Outer-membrane lipoprotein Wza C-terminal domain K08M3_33810 PF02563 Polysaccharide biosynthesis/export protein K08M3_33810 PF10531 SLBB domain K08M3_33830 PF00881 Nitroreductase family K08M3_33840 PF01914 MarC family integral membrane protein K08M3_33850 PF01734 Patatin-like phospholipase K08M3_33860 PF18416 N-acetylglucosamine binding protein domain 2 K08M3_33860 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading K08M3_33870 PF02469 Fasciclin domain K08M3_33880 PF00875 DNA photolyase K08M3_33880 PF03441 FAD binding domain of DNA photolyase K08M3_33910 PF00561 alpha/beta hydrolase fold K08M3_33920 PF00768 D-alanyl-D-alanine carboxypeptidase K08M3_33920 PF07943 Penicillin-binding protein 5, C-terminal domain K08M3_33930 PF00686 Starch binding domain K08M3_33930 PF00128 Alpha amylase, catalytic domain K08M3_33940 PF12833 Helix-turn-helix domain K08M3_33940 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term K08M3_33950 PF00881 Nitroreductase family K08M3_33970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_33970 PF03466 LysR substrate binding domain K08M3_33980 PF09905 DNA-binding protein VF530 K08M3_34010 PF00970 Oxidoreductase FAD-binding domain K08M3_34010 PF00175 Oxidoreductase NAD-binding domain K08M3_34030 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K08M3_34040 PF01594 AI-2E family transporter K08M3_34060 PF13533 Biotin-lipoyl like K08M3_34090 PF04632 Fusaric acid resistance protein family K08M3_34100 PF00892 EamA-like transporter family K08M3_34110 PF03466 LysR substrate binding domain K08M3_34110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_34120 PF07690 Major Facilitator Superfamily K08M3_34140 PF00583 Acetyltransferase (GNAT) family K08M3_34160 PF00072 Response regulator receiver domain K08M3_34160 PF00486 Transcriptional regulatory protein, C terminal K08M3_34170 PF00512 His Kinase A (phospho-acceptor) domain K08M3_34170 PF00672 HAMP domain K08M3_34170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_34200 PF00923 Transaldolase/Fructose-6-phosphate aldolase K08M3_34210 PF04055 Radical SAM superfamily K08M3_34260 PF08000 Bacterial PH domain K08M3_34290 PF00691 OmpA family K08M3_34290 PF13677 Membrane MotB of proton-channel complex MotA/MotB K08M3_34300 PF01618 MotA/TolQ/ExbB proton channel family K08M3_34310 PF04545 Sigma-70, region 4 K08M3_34310 PF04542 Sigma-70 region 2 K08M3_34320 PF03748 Flagellar basal body-associated protein FliL K08M3_34350 PF02561 Flagellar protein FliS K08M3_34360 PF02465 Flagellar hook-associated protein 2 N-terminus K08M3_34360 PF07195 Flagellar hook-associated protein 2 C-terminus K08M3_34360 PF07196 Flagellin hook IN motif K08M3_34380 PF00700 Bacterial flagellin C-terminal helical region K08M3_34380 PF00669 Bacterial flagellin N-terminal helical region K08M3_34400 PF00771 FHIPEP family K08M3_34410 PF01312 FlhB HrpN YscU SpaS Family K08M3_34420 PF01311 Bacterial export proteins, family 1 K08M3_34430 PF01313 Bacterial export proteins, family 3 K08M3_34440 PF00813 FliP family K08M3_34450 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K08M3_34480 PF00072 Response regulator receiver domain K08M3_34480 PF00158 Sigma-54 interaction domain K08M3_34480 PF02954 Bacterial regulatory protein, Fis family K08M3_34490 PF02049 Flagellar hook-basal body complex protein FliE K08M3_34500 PF08345 Flagellar M-ring protein C-terminal K08M3_34500 PF01514 Secretory protein of YscJ/FliF family K08M3_34510 PF01706 FliG C-terminal domain K08M3_34510 PF14841 FliG middle domain K08M3_34510 PF14842 FliG N-terminal domain K08M3_34530 PF18269 T3SS EscN ATPase C-terminal domain K08M3_34530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M3_34560 PF03466 LysR substrate binding domain K08M3_34560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_34620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M3_34630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_34630 PF03466 LysR substrate binding domain K08M3_34670 PF00072 Response regulator receiver domain K08M3_34670 PF00486 Transcriptional regulatory protein, C terminal K08M3_34680 PF00072 Response regulator receiver domain K08M3_34680 PF13426 PAS domain K08M3_34680 PF08448 PAS fold K08M3_34680 PF00512 His Kinase A (phospho-acceptor) domain K08M3_34680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_34690 PF00080 Copper/zinc superoxide dismutase (SODC) K08M3_34720 PF13188 PAS domain K08M3_34720 PF03707 Bacterial signalling protein N terminal repeat K08M3_34720 PF00990 Diguanylate cyclase, GGDEF domain K08M3_34720 PF00563 EAL domain K08M3_34730 PF00155 Aminotransferase class I and II K08M3_34740 PF08240 Alcohol dehydrogenase GroES-like domain K08M3_34740 PF00107 Zinc-binding dehydrogenase K08M3_34800 PF00194 Eukaryotic-type carbonic anhydrase K08M3_34810 PF00924 Mechanosensitive ion channel K08M3_34830 PF01070 FMN-dependent dehydrogenase K08M3_34840 PF02652 L-lactate permease K08M3_34850 PF03466 LysR substrate binding domain K08M3_34850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_34860 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K08M3_34860 PF00326 Prolyl oligopeptidase family K08M3_34870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_34870 PF00005 ABC transporter K08M3_34890 PF13654 AAA domain K08M3_34890 PF05362 Lon protease (S16) C-terminal proteolytic domain K08M3_34900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_34900 PF00672 HAMP domain K08M3_34900 PF12729 Four helix bundle sensory module for signal transduction K08M3_34910 PF13609 Gram-negative porin K08M3_34920 PF12945 Flagellar protein YcgR K08M3_34920 PF07238 PilZ domain K08M3_34950 PF00583 Acetyltransferase (GNAT) family K08M3_34960 PF12800 4Fe-4S binding domain K08M3_34960 PF12838 4Fe-4S dicluster domain K08M3_34970 PF13237 4Fe-4S dicluster domain K08M3_34970 PF12801 4Fe-4S binding domain K08M3_35010 PF12558 ATP-binding cassette cobalt transporter K08M3_35010 PF00005 ABC transporter K08M3_35020 PF07155 ECF-type riboflavin transporter, S component K08M3_35030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_35030 PF00529 HlyD membrane-fusion protein of T1SS K08M3_35040 PF11742 Protein of unknown function (DUF3302) K08M3_35050 PF00990 Diguanylate cyclase, GGDEF domain K08M3_35080 PF01048 Phosphorylase superfamily K08M3_35090 PF08349 Protein of unknown function (DUF1722) K08M3_35100 PF13411 MerR HTH family regulatory protein K08M3_35110 PF00875 DNA photolyase K08M3_35110 PF03441 FAD binding domain of DNA photolyase K08M3_35120 PF03734 L,D-transpeptidase catalytic domain K08M3_35120 PF17969 L,D-transpeptidase C-terminal domain K08M3_35120 PF01476 LysM domain K08M3_35140 PF00271 Helicase conserved C-terminal domain K08M3_35140 PF00270 DEAD/DEAH box helicase K08M3_35150 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K08M3_35150 PF00326 Prolyl oligopeptidase family K08M3_35160 PF00593 TonB dependent receptor K08M3_35160 PF07715 TonB-dependent Receptor Plug Domain K08M3_35200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_35200 PF00672 HAMP domain K08M3_35210 PF12849 PBP superfamily domain K08M3_35220 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_35230 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_35240 PF00005 ABC transporter K08M3_35270 PF13519 von Willebrand factor type A domain K08M3_35280 PF13519 von Willebrand factor type A domain K08M3_35300 PF01882 Protein of unknown function DUF58 K08M3_35310 PF17863 AAA lid domain K08M3_35310 PF07726 ATPase family associated with various cellular activities (AAA) K08M3_35320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_35320 PF02743 Cache domain K08M3_35320 PF00672 HAMP domain K08M3_35340 PF00196 Bacterial regulatory proteins, luxR family K08M3_35350 PF00196 Bacterial regulatory proteins, luxR family K08M3_35370 PF00664 ABC transporter transmembrane region K08M3_35370 PF00005 ABC transporter K08M3_35380 PF00529 HlyD membrane-fusion protein of T1SS K08M3_35400 PF01032 FecCD transport family K08M3_35410 PF01497 Periplasmic binding protein K08M3_35420 PF00005 ABC transporter K08M3_35430 PF07715 TonB-dependent Receptor Plug Domain K08M3_35430 PF00593 TonB dependent receptor K08M3_35440 PF00664 ABC transporter transmembrane region K08M3_35440 PF00005 ABC transporter K08M3_35450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_35450 PF00512 His Kinase A (phospho-acceptor) domain K08M3_35460 PF00072 Response regulator receiver domain K08M3_35460 PF00486 Transcriptional regulatory protein, C terminal K08M3_35470 PF02254 TrkA-N domain K08M3_35470 PF02080 TrkA-C domain K08M3_35480 PF02386 Cation transport protein K08M3_35490 PF03466 LysR substrate binding domain K08M3_35490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_35500 PF02028 BCCT, betaine/carnitine/choline family transporter K08M3_35510 PF00355 Rieske [2Fe-2S] domain K08M3_35510 PF00848 Ring hydroxylating alpha subunit (catalytic domain) K08M3_35530 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_35530 PF18113 Rubredoxin binding C-terminal domain K08M3_35540 PF01266 FAD dependent oxidoreductase K08M3_35560 PF00127 Copper binding proteins, plastocyanin/azurin family K08M3_35570 PF13419 Haloacid dehalogenase-like hydrolase K08M3_35590 PF01590 GAF domain K08M3_35590 PF00158 Sigma-54 interaction domain K08M3_35600 PF00258 Flavodoxin K08M3_35600 PF00753 Metallo-beta-lactamase superfamily K08M3_35600 PF00301 Rubredoxin K08M3_35610 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_35610 PF18113 Rubredoxin binding C-terminal domain K08M3_35630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K08M3_35630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M3_35640 PF06628 Catalase-related immune-responsive K08M3_35640 PF00199 Catalase K08M3_35650 PF13417 Glutathione S-transferase, N-terminal domain K08M3_35660 PF16884 N-terminal domain of oxidoreductase K08M3_35660 PF00107 Zinc-binding dehydrogenase K08M3_35670 PF00440 Bacterial regulatory proteins, tetR family K08M3_35670 PF16925 Tetracyclin repressor-like, C-terminal domain K08M3_35740 PF13439 Glycosyltransferase Family 4 K08M3_35740 PF00534 Glycosyl transferases group 1 K08M3_35760 PF13807 G-rich domain on putative tyrosine kinase K08M3_35760 PF13614 AAA domain K08M3_35760 PF02706 Chain length determinant protein K08M3_35790 PF02397 Bacterial sugar transferase K08M3_35800 PF08402 TOBE domain K08M3_35800 PF00005 ABC transporter K08M3_35810 PF01547 Bacterial extracellular solute-binding protein K08M3_35820 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_35820 PF14785 Maltose transport system permease protein MalF P2 domain K08M3_35830 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_35890 PF05661 Protein of unknown function (DUF808) K08M3_35900 PF01979 Amidohydrolase family K08M3_35910 PF01679 Proteolipid membrane potential modulator K08M3_35920 PF03473 MOSC domain K08M3_35920 PF03476 MOSC N-terminal beta barrel domain K08M3_35920 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M3_35920 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M3_35920 PF03476 MOSC N-terminal beta barrel domain K08M3_35920 PF03473 MOSC domain K08M3_35930 PF02540 NAD synthase K08M3_35940 PF01467 Cytidylyltransferase-like K08M3_36020 PF00005 ABC transporter K08M3_36030 PF01032 FecCD transport family K08M3_36050 PF02472 Biopolymer transport protein ExbD/TolR K08M3_36060 PF01618 MotA/TolQ/ExbB proton channel family K08M3_36070 PF03544 Gram-negative bacterial TonB protein C-terminal K08M3_36080 PF04055 Radical SAM superfamily K08M3_36090 PF06228 Haem utilisation ChuX/HutX K08M3_36100 PF01243 Pyridoxamine 5'-phosphate oxidase K08M3_36120 PF00072 Response regulator receiver domain K08M3_36120 PF01584 CheW-like domain K08M3_36140 PF01554 MatE K08M3_36150 PF00005 ABC transporter K08M3_36150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_36160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_36160 PF00005 ABC transporter K08M3_36170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_36180 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_36190 PF00455 DeoR C terminal sensor domain K08M3_36190 PF08220 DeoR-like helix-turn-helix domain K08M3_36200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M3_36200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K08M3_36210 PF17042 Nucleotide-binding C-terminal domain K08M3_36210 PF07005 Sugar-binding N-terminal domain K08M3_36220 PF00596 Class II Aldolase and Adducin N-terminal domain K08M3_36230 PF01261 Xylose isomerase-like TIM barrel K08M3_36240 PF01370 NAD dependent epimerase/dehydratase family K08M3_36250 PF02447 GntP family permease K08M3_36260 PF02583 Metal-sensitive transcriptional repressor K08M3_36270 PF03824 High-affinity nickel-transport protein K08M3_36280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_36280 PF00672 HAMP domain K08M3_36280 PF02743 Cache domain K08M3_36290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_36290 PF03466 LysR substrate binding domain K08M3_36300 PF17848 Acetyl-coA carboxylase zinc finger domain K08M3_36300 PF01039 Carboxyl transferase domain K08M3_36320 PF04151 Bacterial pre-peptidase C-terminal domain K08M3_36320 PF01752 Collagenase K08M3_36320 PF08453 Peptidase family M9 N-terminal K08M3_36340 PF02627 Carboxymuconolactone decarboxylase family K08M3_36350 PF13411 MerR HTH family regulatory protein K08M3_36360 PF00128 Alpha amylase, catalytic domain K08M3_36390 PF00999 Sodium/hydrogen exchanger family K08M3_36390 PF02254 TrkA-N domain K08M3_36400 PF02525 Flavodoxin-like fold K08M3_36410 PF00582 Universal stress protein family K08M3_36420 PF16326 ABC transporter C-terminal domain K08M3_36420 PF00005 ABC transporter K08M3_36420 PF12848 ABC transporter K08M3_36430 PF00326 Prolyl oligopeptidase family K08M3_36430 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K08M3_36450 PF13533 Biotin-lipoyl like K08M3_36460 PF00873 AcrB/AcrD/AcrF family K08M3_36470 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K08M3_36490 PF13302 Acetyltransferase (GNAT) domain K08M3_36510 PF00990 Diguanylate cyclase, GGDEF domain K08M3_36510 PF17151 Periplasmic sensor domain K08M3_36540 PF00873 AcrB/AcrD/AcrF family K08M3_36550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_36580 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region K08M3_36580 PF01568 Molydopterin dinucleotide binding domain K08M3_36580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K08M3_36580 PF12838 4Fe-4S dicluster domain K08M3_36580 PF00384 Molybdopterin oxidoreductase K08M3_36610 PF00005 ABC transporter K08M3_36630 PF01418 Helix-turn-helix domain, rpiR family K08M3_36630 PF02685 Glucokinase K08M3_36630 PF01380 SIS domain K08M3_36650 PF07969 Amidohydrolase family K08M3_36670 PF00474 Sodium:solute symporter family K08M3_36680 PF00294 pfkB family carbohydrate kinase K08M3_36690 PF01081 KDPG and KHG aldolase K08M3_36700 PF00728 Glycosyl hydrolase family 20, catalytic domain K08M3_36700 PF02838 Glycosyl hydrolase family 20, domain 2 K08M3_36710 PF10282 Lactonase, 7-bladed beta-propeller K08M3_36720 PF01042 Endoribonuclease L-PSP K08M3_36730 PF02567 Phenazine biosynthesis-like protein K08M3_36740 PF01161 Phosphatidylethanolamine-binding protein K08M3_36760 PF01758 Sodium Bile acid symporter family K08M3_36790 PF01638 HxlR-like helix-turn-helix K08M3_36840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_36840 PF03466 LysR substrate binding domain K08M3_36850 PF00248 Aldo/keto reductase family K08M3_36860 PF03928 Haem-degrading K08M3_36900 PF03222 Tryptophan/tyrosine permease family K08M3_36920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_36920 PF02743 Cache domain K08M3_36920 PF00672 HAMP domain K08M3_36970 PF08525 Opacity-associated protein A N-terminal motif K08M3_36970 PF01476 LysM domain K08M3_36970 PF01551 Peptidase family M23 K08M3_36980 PF00990 Diguanylate cyclase, GGDEF domain K08M3_36980 PF08447 PAS fold K08M3_36980 PF08448 PAS fold K08M3_36980 PF00563 EAL domain K08M3_36990 PF03466 LysR substrate binding domain K08M3_36990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_37000 PF07690 Major Facilitator Superfamily K08M3_37030 PF00462 Glutaredoxin K08M3_37040 PF00892 EamA-like transporter family K08M3_37050 PF00267 Gram-negative porin K08M3_37070 PF01557 Fumarylacetoacetate (FAA) hydrolase family K08M3_37110 PF01810 LysE type translocator K08M3_37130 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K08M3_37130 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K08M3_37130 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K08M3_37130 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K08M3_37140 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K08M3_37140 PF02790 Cytochrome C oxidase subunit II, transmembrane domain K08M3_37150 PF00115 Cytochrome C and Quinol oxidase polypeptide I K08M3_37160 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 K08M3_37170 PF00510 Cytochrome c oxidase subunit III K08M3_37200 PF02628 Cytochrome oxidase assembly protein K08M3_37210 PF01040 UbiA prenyltransferase family K08M3_37220 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K08M3_37220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M3_37240 PF00691 OmpA family K08M3_37240 PF05736 OprF membrane domain K08M3_37280 PF00313 'Cold-shock' DNA-binding domain K08M3_37290 PF03889 Alternative ribosome-rescue factor A K08M3_37300 PF00990 Diguanylate cyclase, GGDEF domain K08M3_37310 PF00140 Sigma-70 factor, region 1.2 K08M3_37310 PF04542 Sigma-70 region 2 K08M3_37310 PF04545 Sigma-70, region 4 K08M3_37310 PF04539 Sigma-70 region 3 K08M3_37330 PF00005 ABC transporter K08M3_37330 PF00664 ABC transporter transmembrane region K08M3_37340 PF00664 ABC transporter transmembrane region K08M3_37340 PF00005 ABC transporter K08M3_37350 PF02321 Outer membrane efflux protein K08M3_37360 PF00072 Response regulator receiver domain K08M3_37360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_37370 PF13533 Biotin-lipoyl like K08M3_37410 PF17200 Single Cache domain 2 K08M3_37410 PF00672 HAMP domain K08M3_37410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_37430 PF00210 Ferritin-like domain K08M3_37450 PF07995 Glucose / Sorbosone dehydrogenase K08M3_37460 PF00465 Iron-containing alcohol dehydrogenase K08M3_37490 PF00892 EamA-like transporter family K08M3_37510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_37510 PF03466 LysR substrate binding domain K08M3_37530 PF13193 AMP-binding enzyme C-terminal domain K08M3_37530 PF00501 AMP-binding enzyme K08M3_37540 PF00351 Biopterin-dependent aromatic amino acid hydroxylase K08M3_37550 PF01329 Pterin 4 alpha carbinolamine dehydratase K08M3_37590 PF12843 Putative quorum-sensing-regulated virulence factor K08M3_37630 PF00271 Helicase conserved C-terminal domain K08M3_37630 PF00270 DEAD/DEAH box helicase K08M3_37640 PF09905 DNA-binding protein VF530 K08M3_37660 PF00291 Pyridoxal-phosphate dependent enzyme K08M3_37670 PF00313 'Cold-shock' DNA-binding domain K08M3_37690 PF01470 Pyroglutamyl peptidase K08M3_37710 PF02492 CobW/HypB/UreG, nucleotide-binding domain K08M3_37710 PF07683 Cobalamin synthesis protein cobW C-terminal domain K08M3_37720 PF00271 Helicase conserved C-terminal domain K08M3_37720 PF00270 DEAD/DEAH box helicase K08M3_37760 PF12792 CSS motif domain associated with EAL K08M3_37760 PF00563 EAL domain K08M3_37770 PF00005 ABC transporter K08M3_37780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_37780 PF00672 HAMP domain K08M3_37780 PF12729 Four helix bundle sensory module for signal transduction K08M3_37810 PF12849 PBP superfamily domain K08M3_37830 PF12833 Helix-turn-helix domain K08M3_37840 PF00575 S1 RNA binding domain K08M3_37840 PF00773 RNB domain K08M3_37840 PF08206 Ribonuclease B OB domain K08M3_37850 PF00270 DEAD/DEAH box helicase K08M3_37850 PF00271 Helicase conserved C-terminal domain K08M3_37850 PF03880 DbpA RNA binding domain K08M3_37860 PF00871 Acetokinase family K08M3_37870 PF03466 LysR substrate binding domain K08M3_37870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_37880 PF12146 Serine aminopeptidase, S33 K08M3_37890 PF12146 Serine aminopeptidase, S33 K08M3_37920 PF01925 Sulfite exporter TauE/SafE K08M3_37950 PF01979 Amidohydrolase family K08M3_37960 PF00132 Bacterial transferase hexapeptide (six repeats) K08M3_37970 PF02492 CobW/HypB/UreG, nucleotide-binding domain K08M3_37970 PF07683 Cobalamin synthesis protein cobW C-terminal domain K08M3_37980 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K08M3_37990 PF01476 LysM domain K08M3_37990 PF01551 Peptidase family M23 K08M3_37990 PF08525 Opacity-associated protein A N-terminal motif K08M3_38010 PF07683 Cobalamin synthesis protein cobW C-terminal domain K08M3_38010 PF02492 CobW/HypB/UreG, nucleotide-binding domain K08M3_38020 PF07683 Cobalamin synthesis protein cobW C-terminal domain K08M3_38020 PF02492 CobW/HypB/UreG, nucleotide-binding domain K08M3_38030 PF01258 Prokaryotic dksA/traR C4-type zinc finger K08M3_38040 PF01914 MarC family integral membrane protein K08M3_38060 PF08447 PAS fold K08M3_38060 PF13426 PAS domain K08M3_38060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_38080 PF00682 HMGL-like K08M3_38090 PF00378 Enoyl-CoA hydratase/isomerase K08M3_38100 PF01039 Carboxyl transferase domain K08M3_38110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K08M3_38110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K08M3_38110 PF02770 Acyl-CoA dehydrogenase, middle domain K08M3_38120 PF09278 MerR, DNA binding K08M3_38120 PF00376 MerR family regulatory protein K08M3_38130 PF02803 Thiolase, C-terminal domain K08M3_38130 PF00108 Thiolase, N-terminal domain K08M3_38140 PF00171 Aldehyde dehydrogenase family K08M3_38160 PF00378 Enoyl-CoA hydratase/isomerase K08M3_38170 PF00378 Enoyl-CoA hydratase/isomerase K08M3_38180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M3_38180 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K08M3_38200 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K08M3_38200 PF06481 COX Aromatic Rich Motif K08M3_38210 PF00115 Cytochrome C and Quinol oxidase polypeptide I K08M3_38220 PF00510 Cytochrome c oxidase subunit III K08M3_38240 PF01040 UbiA prenyltransferase family K08M3_38250 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_38250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M3_38280 PF00171 Aldehyde dehydrogenase family K08M3_38300 PF02028 BCCT, betaine/carnitine/choline family transporter K08M3_38360 PF00005 ABC transporter K08M3_38370 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_38380 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_38390 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_38410 PF03466 LysR substrate binding domain K08M3_38410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_38440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_38440 PF03466 LysR substrate binding domain K08M3_38460 PF01012 Electron transfer flavoprotein domain K08M3_38460 PF00766 Electron transfer flavoprotein FAD-binding domain K08M3_38470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K08M3_38470 PF02817 e3 binding domain K08M3_38470 PF00364 Biotin-requiring enzyme K08M3_38480 PF02780 Transketolase, C-terminal domain K08M3_38480 PF02779 Transketolase, pyrimidine binding domain K08M3_38490 PF00676 Dehydrogenase E1 component K08M3_38530 PF00012 Hsp70 protein K08M3_38540 PF04314 Copper chaperone PCu(A)C K08M3_38590 PF00072 Response regulator receiver domain K08M3_38590 PF00486 Transcriptional regulatory protein, C terminal K08M3_38630 PF00082 Subtilase family K08M3_38630 PF01483 Proprotein convertase P-domain K08M3_38650 PF07694 5TMR of 5TMR-LYT K08M3_38650 PF00990 Diguanylate cyclase, GGDEF domain K08M3_38670 PF03222 Tryptophan/tyrosine permease family K08M3_38690 PF00384 Molybdopterin oxidoreductase K08M3_38690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K08M3_38690 PF01568 Molydopterin dinucleotide binding domain K08M3_38700 PF10414 Sirohaem synthase dimerisation region K08M3_38700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M3_38700 PF14824 Sirohaem biosynthesis protein central K08M3_38710 PF00591 Glycosyl transferase family, a/b domain K08M3_38710 PF02885 Glycosyl transferase family, helical bundle domain K08M3_38720 PF01738 Dienelactone hydrolase family K08M3_38730 PF03861 ANTAR domain K08M3_38730 PF08376 Nitrate and nitrite sensing K08M3_38740 PF00005 ABC transporter K08M3_38750 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_38760 PF00005 ABC transporter K08M3_38770 PF13806 Rieske-like [2Fe-2S] domain K08M3_38770 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_38770 PF18267 Rubredoxin NAD+ reductase C-terminal domain K08M3_38770 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K08M3_38770 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M3_38770 PF04324 BFD-like [2Fe-2S] binding domain K08M3_38830 PF00211 Adenylate and Guanylate cyclase catalytic domain K08M3_38830 PF00072 Response regulator receiver domain K08M3_38870 PF03793 PASTA domain K08M3_38870 PF00069 Protein kinase domain K08M3_38910 PF00691 OmpA family K08M3_38910 PF13677 Membrane MotB of proton-channel complex MotA/MotB K08M3_39030 PF10431 C-terminal, D2-small domain, of ClpB protein K08M3_39030 PF17871 AAA lid domain K08M3_39030 PF07724 AAA domain (Cdc48 subfamily) K08M3_39030 PF00004 ATPase family associated with various cellular activities (AAA) K08M3_39050 PF16671 Actin cross-linking domain K08M3_39050 PF04717 Type VI secretion system, phage-baseplate injector K08M3_39080 PF12320 Type 5 capsule protein repressor C-terminal domain K08M3_39080 PF00149 Calcineurin-like phosphoesterase K08M3_39090 PF13476 AAA domain K08M3_39110 PF08212 Lipocalin-like domain K08M3_39130 PF03606 C4-dicarboxylate anaerobic carrier K08M3_39150 PF01212 Beta-eliminating lyase K08M3_39170 PF17868 AAA lid domain K08M3_39170 PF07728 AAA domain (dynein-related subfamily) K08M3_39170 PF12592 Protein of unknown function (DUF3763) K08M3_39180 PF05762 VWA domain containing CoxE-like protein K08M3_39210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_39210 PF03466 LysR substrate binding domain K08M3_39220 PF01565 FAD binding domain K08M3_39220 PF09330 D-lactate dehydrogenase, membrane binding K08M3_39250 PF00842 Alanine racemase, C-terminal domain K08M3_39250 PF01168 Alanine racemase, N-terminal domain K08M3_39260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_39260 PF00672 HAMP domain K08M3_39320 PF14579 Helix-hairpin-helix motif K08M3_39320 PF07733 Bacterial DNA polymerase III alpha NTPase domain K08M3_39320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K08M3_39320 PF00929 Exonuclease K08M3_39320 PF02811 PHP domain K08M3_39410 PF02511 Thymidylate synthase complementing protein K08M3_39420 PF03477 ATP cone domain K08M3_39420 PF13597 Anaerobic ribonucleoside-triphosphate reductase K08M3_39810 PF09154 Domain of unknown function (DUF1939) K08M3_39810 PF00128 Alpha amylase, catalytic domain K08M3_39870 PF00296 Luciferase-like monooxygenase K08M3_39880 PF03707 Bacterial signalling protein N terminal repeat K08M3_39880 PF00563 EAL domain K08M3_39880 PF00990 Diguanylate cyclase, GGDEF domain K08M3_39900 PF03707 Bacterial signalling protein N terminal repeat K08M3_39900 PF00990 Diguanylate cyclase, GGDEF domain K08M3_39900 PF00563 EAL domain K08M3_39910 PF14760 Rnk N-terminus K08M3_39910 PF01272 Transcription elongation factor, GreA/GreB, C-term K08M3_39930 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_39930 PF18267 Rubredoxin NAD+ reductase C-terminal domain K08M3_39930 PF04324 BFD-like [2Fe-2S] binding domain K08M3_39930 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M3_39930 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K08M3_39940 PF13806 Rieske-like [2Fe-2S] domain K08M3_39950 PF01226 Formate/nitrite transporter K08M3_39960 PF14824 Sirohaem biosynthesis protein central K08M3_39960 PF10414 Sirohaem synthase dimerisation region K08M3_39960 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M3_39990 PF03605 Anaerobic c4-dicarboxylate membrane transporter K08M3_40010 PF07715 TonB-dependent Receptor Plug Domain K08M3_40010 PF00593 TonB dependent receptor K08M3_40030 PF13302 Acetyltransferase (GNAT) domain K08M3_40040 PF11756 Nitrous oxide-stimulated promoter K08M3_40050 PF07690 Major Facilitator Superfamily K08M3_40060 PF00085 Thioredoxin K08M3_40070 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K08M3_40070 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K08M3_40110 PF01238 Phosphomannose isomerase type I K08M3_40120 PF07690 Major Facilitator Superfamily K08M3_40130 PF07730 Histidine kinase K08M3_40130 PF05231 MASE1 K08M3_40130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_40140 PF00196 Bacterial regulatory proteins, luxR family K08M3_40140 PF00072 Response regulator receiver domain K08M3_40150 PF07690 Major Facilitator Superfamily K08M3_40160 PF02634 FdhD/NarQ family K08M3_40170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_40170 PF03466 LysR substrate binding domain K08M3_40180 PF00384 Molybdopterin oxidoreductase K08M3_40210 PF02567 Phenazine biosynthesis-like protein K08M3_40220 PF01177 Asp/Glu/Hydantoin racemase K08M3_40230 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M3_40230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M3_40250 PF04143 Sulphur transport K08M3_40280 PF13597 Anaerobic ribonucleoside-triphosphate reductase K08M3_40280 PF03477 ATP cone domain K08M3_40300 PF01554 MatE K08M3_40310 PF12833 Helix-turn-helix domain K08M3_40310 PF12852 Cupin K08M3_40320 PF00155 Aminotransferase class I and II K08M3_40330 PF08443 RimK-like ATP-grasp domain K08M3_40330 PF18030 RimK PreATP-grasp domain K08M3_40350 PF04076 Bacterial OB fold (BOF) protein K08M3_40360 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K08M3_40360 PF07685 CobB/CobQ-like glutamine amidotransferase domain K08M3_40380 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_40390 PF00005 ABC transporter K08M3_40390 PF03459 TOBE domain K08M3_40410 PF00360 Phytochrome region K08M3_40410 PF01590 GAF domain K08M3_40410 PF00990 Diguanylate cyclase, GGDEF domain K08M3_40410 PF00563 EAL domain K08M3_40420 PF00072 Response regulator receiver domain K08M3_40420 PF00990 Diguanylate cyclase, GGDEF domain K08M3_40450 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch K08M3_40450 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K08M3_40450 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K08M3_40460 PF02233 NAD(P) transhydrogenase beta subunit K08M3_40480 PF00486 Transcriptional regulatory protein, C terminal K08M3_40480 PF00072 Response regulator receiver domain K08M3_40510 PF03701 Uncharacterised protein family (UPF0181) K08M3_40520 PF00582 Universal stress protein family K08M3_40540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_40540 PF03466 LysR substrate binding domain K08M3_40840 PF01253 Translation initiation factor SUI1 K08M3_40860 PF07478 D-ala D-ala ligase C-terminus K08M3_40860 PF01820 D-ala D-ala ligase N-terminus K08M3_40870 PF05036 Sporulation related domain K08M3_40880 PF13607 Succinyl-CoA ligase like flavodoxin domain K08M3_40880 PF00583 Acetyltransferase (GNAT) family K08M3_40880 PF13380 CoA binding domain K08M3_40890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_40890 PF03466 LysR substrate binding domain K08M3_40900 PF04886 PT repeat K08M3_40900 PF00593 TonB dependent receptor K08M3_40900 PF07715 TonB-dependent Receptor Plug Domain K08M3_40910 PF16363 GDP-mannose 4,6 dehydratase K08M3_40920 PF08447 PAS fold K08M3_40920 PF05231 MASE1 K08M3_40920 PF13426 PAS domain K08M3_40920 PF00990 Diguanylate cyclase, GGDEF domain K08M3_40920 PF00563 EAL domain K08M3_40920 PF08448 PAS fold K08M3_40930 PF03746 LamB/YcsF family K08M3_40940 PF02682 Carboxyltransferase domain, subdomain C and D K08M3_40950 PF02626 Carboxyltransferase domain, subdomain A and B K08M3_40980 PF00005 ABC transporter K08M3_40990 PF13472 GDSL-like Lipase/Acylhydrolase family K08M3_41000 PF12241 Trans-2-enoyl-CoA reductase catalytic region K08M3_41000 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase K08M3_41000 PF07055 Enoyl reductase FAD binding domain K08M3_41010 PF03707 Bacterial signalling protein N terminal repeat K08M3_41010 PF13188 PAS domain K08M3_41010 PF00563 EAL domain K08M3_41010 PF00990 Diguanylate cyclase, GGDEF domain K08M3_41030 PF00684 DnaJ central domain K08M3_41030 PF01556 DnaJ C terminal domain K08M3_41030 PF00226 DnaJ domain K08M3_41080 PF12793 Sugar transport-related sRNA regulator N-term K08M3_41080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M3_41100 PF03061 Thioesterase superfamily K08M3_41130 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K08M3_41140 PF12262 Bacterial virulence factor lipase N-terminal K08M3_41180 PF03741 Integral membrane protein TerC family K08M3_41190 PF02872 5'-nucleotidase, C-terminal domain K08M3_41190 PF00149 Calcineurin-like phosphoesterase K08M3_41200 PF11398 Protein of unknown function (DUF2813) K08M3_41210 PF06496 Protein of unknown function (DUF1097) K08M3_41220 PF03466 LysR substrate binding domain K08M3_41220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_41240 PF01226 Formate/nitrite transporter K08M3_41250 PF04264 YceI-like domain K08M3_41260 PF01292 Prokaryotic cytochrome b561 K08M3_41300 PF00271 Helicase conserved C-terminal domain K08M3_41300 PF00270 DEAD/DEAH box helicase K08M3_41310 PF04336 Acyl carrier protein phosphodiesterase K08M3_41330 PF12729 Four helix bundle sensory module for signal transduction K08M3_41330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_41330 PF00672 HAMP domain K08M3_41340 PF13419 Haloacid dehalogenase-like hydrolase K08M3_41370 PF00294 pfkB family carbohydrate kinase K08M3_41380 PF01268 Formate--tetrahydrofolate ligase K08M3_41390 PF00483 Nucleotidyl transferase K08M3_41400 PF06483 Chitinase C K08M3_41400 PF00704 Glycosyl hydrolases family 18 K08M3_41410 PF06719 AraC-type transcriptional regulator N-terminus K08M3_41410 PF12833 Helix-turn-helix domain K08M3_41420 PF00465 Iron-containing alcohol dehydrogenase K08M3_41440 PF00005 ABC transporter K08M3_41450 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_41460 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M3_41470 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_41480 PF00989 PAS fold K08M3_41480 PF00990 Diguanylate cyclase, GGDEF domain K08M3_41480 PF01590 GAF domain K08M3_41480 PF00563 EAL domain K08M3_41510 PF00356 Bacterial regulatory proteins, lacI family K08M3_41510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K08M3_41520 PF00381 PTS HPr component phosphorylation site K08M3_41520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M3_41530 PF00294 pfkB family carbohydrate kinase K08M3_41540 PF02378 Phosphotransferase system, EIIC K08M3_41540 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K08M3_41560 PF00873 AcrB/AcrD/AcrF family K08M3_41600 PF08669 Glycine cleavage T-protein C-terminal barrel domain K08M3_41600 PF01571 Aminomethyltransferase folate-binding domain K08M3_41620 PF00464 Serine hydroxymethyltransferase K08M3_41630 PF01597 Glycine cleavage H-protein K08M3_41640 PF02347 Glycine cleavage system P-protein K08M3_41650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M3_41660 PF00753 Metallo-beta-lactamase superfamily K08M3_41660 PF16123 Hydroxyacylglutathione hydrolase C-terminus K08M3_41670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_41670 PF03466 LysR substrate binding domain K08M3_41680 PF00892 EamA-like transporter family K08M3_41690 PF02627 Carboxymuconolactone decarboxylase family K08M3_41700 PF12833 Helix-turn-helix domain K08M3_41750 PF00929 Exonuclease K08M3_41750 PF14579 Helix-hairpin-helix motif K08M3_41750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K08M3_41750 PF07733 Bacterial DNA polymerase III alpha NTPase domain K08M3_41750 PF11490 DNA polymerase III polC-type N-terminus II K08M3_41750 PF02811 PHP domain K08M3_41760 PF00005 ABC transporter K08M3_41760 PF00664 ABC transporter transmembrane region K08M3_41800 PF02253 Phospholipase A1 K08M3_41820 PF00376 MerR family regulatory protein K08M3_41820 PF09278 MerR, DNA binding K08M3_41830 PF01327 Polypeptide deformylase K08M3_41890 PF00571 CBS domain K08M3_41890 PF01769 Divalent cation transporter K08M3_41890 PF03448 MgtE intracellular N domain K08M3_41930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M3_41940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M3_41960 PF01757 Acyltransferase family K08M3_41990 PF00141 Peroxidase K08M3_42000 PF01645 Conserved region in glutamate synthase K08M3_42000 PF13187 4Fe-4S dicluster domain K08M3_42020 PF00171 Aldehyde dehydrogenase family K08M3_42050 PF00892 EamA-like transporter family K08M3_42060 PF00893 Small Multidrug Resistance protein K08M3_42100 PF00892 EamA-like transporter family K08M3_42120 PF08334 Type II secretion system (T2SS), protein G K08M3_42120 PF07963 Prokaryotic N-terminal methylation motif K08M3_42130 PF01584 CheW-like domain K08M3_42130 PF00072 Response regulator receiver domain K08M3_42140 PF00196 Bacterial regulatory proteins, luxR family K08M3_42140 PF00072 Response regulator receiver domain K08M3_42160 PF00990 Diguanylate cyclase, GGDEF domain K08M3_42170 PF00196 Bacterial regulatory proteins, luxR family K08M3_42170 PF00072 Response regulator receiver domain K08M3_42180 PF13188 PAS domain K08M3_42180 PF00563 EAL domain K08M3_42180 PF00990 Diguanylate cyclase, GGDEF domain K08M3_42180 PF03707 Bacterial signalling protein N terminal repeat K08M3_42190 PF00072 Response regulator receiver domain K08M3_42190 PF00512 His Kinase A (phospho-acceptor) domain K08M3_42190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_42190 PF09456 RcsC Alpha-Beta-Loop (ABL) K08M3_42200 PF01926 50S ribosome-binding GTPase K08M3_42210 PF00155 Aminotransferase class I and II K08M3_42220 PF00072 Response regulator receiver domain K08M3_42220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_42240 PF00583 Acetyltransferase (GNAT) family K08M3_42240 PF00814 Glycoprotease family K08M3_42260 PF03606 C4-dicarboxylate anaerobic carrier K08M3_42290 PF18081 Fanconi anemia-associated nuclease SAP domain K08M3_42290 PF08774 VRR-NUC domain K08M3_42310 PF04076 Bacterial OB fold (BOF) protein K08M3_42320 PF00781 Diacylglycerol kinase catalytic domain K08M3_42330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_42330 PF03466 LysR substrate binding domain K08M3_42340 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K08M3_42370 PF00092 von Willebrand factor type A domain K08M3_42400 PF17863 AAA lid domain K08M3_42400 PF07726 ATPase family associated with various cellular activities (AAA) K08M3_42410 PF13186 Iron-sulfur cluster-binding domain K08M3_42410 PF04055 Radical SAM superfamily K08M3_42420 PF16385 Domain of unknown function K08M3_42420 PF00884 Sulfatase K08M3_42430 PF03466 LysR substrate binding domain K08M3_42430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_42440 PF00884 Sulfatase K08M3_42450 PF00486 Transcriptional regulatory protein, C terminal K08M3_42450 PF00072 Response regulator receiver domain K08M3_42480 PF00512 His Kinase A (phospho-acceptor) domain K08M3_42480 PF01627 Hpt domain K08M3_42480 PF00072 Response regulator receiver domain K08M3_42480 PF00672 HAMP domain K08M3_42480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_42490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K08M3_42500 PF02142 MGS-like domain K08M3_42510 PF12462 DNA helicase IV / RNA helicase N terminal K08M3_42510 PF00580 UvrD/REP helicase N-terminal domain K08M3_42510 PF13361 UvrD-like helicase C-terminal domain K08M3_42520 PF12805 FUSC-like inner membrane protein yccS K08M3_42580 PF07715 TonB-dependent Receptor Plug Domain K08M3_42580 PF00593 TonB dependent receptor K08M3_42600 PF13411 MerR HTH family regulatory protein K08M3_42610 PF00005 ABC transporter K08M3_42620 PF01032 FecCD transport family K08M3_42630 PF01032 FecCD transport family K08M3_42640 PF01497 Periplasmic binding protein K08M3_42660 PF01048 Phosphorylase superfamily K08M3_42670 PF04973 Nicotinamide mononucleotide transporter K08M3_42690 PF00356 Bacterial regulatory proteins, lacI family K08M3_42700 PF00294 pfkB family carbohydrate kinase K08M3_42710 PF13407 Periplasmic binding protein domain K08M3_42720 PF02653 Branched-chain amino acid transport system / permease component K08M3_42730 PF00005 ABC transporter K08M3_42740 PF05025 RbsD / FucU transport protein family K08M3_42750 PF00990 Diguanylate cyclase, GGDEF domain K08M3_42750 PF00563 EAL domain K08M3_42830 PF04116 Fatty acid hydroxylase superfamily K08M3_42850 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain K08M3_42850 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K08M3_42870 PF00512 His Kinase A (phospho-acceptor) domain K08M3_42870 PF00072 Response regulator receiver domain K08M3_42870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_42870 PF09308 LuxQ, periplasmic K08M3_42880 PF00034 Cytochrome c K08M3_42880 PF03150 Di-haem cytochrome c peroxidase K08M3_42900 PF16200 C-terminal region of band_7 K08M3_42900 PF01145 SPFH domain / Band 7 family K08M3_42920 PF00881 Nitroreductase family K08M3_42930 PF00571 CBS domain K08M3_42930 PF00005 ABC transporter K08M3_42940 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_42950 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K08M3_42960 PF00732 GMC oxidoreductase K08M3_42960 PF05199 GMC oxidoreductase K08M3_42970 PF00171 Aldehyde dehydrogenase family K08M3_42980 PF00440 Bacterial regulatory proteins, tetR family K08M3_42980 PF13977 BetI-type transcriptional repressor, C-terminal K08M3_42990 PF00990 Diguanylate cyclase, GGDEF domain K08M3_42990 PF00072 Response regulator receiver domain K08M3_43010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M3_43010 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K08M3_43030 PF00378 Enoyl-CoA hydratase/isomerase K08M3_43040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K08M3_43040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K08M3_43040 PF02770 Acyl-CoA dehydrogenase, middle domain K08M3_43050 PF00171 Aldehyde dehydrogenase family K08M3_43060 PF00108 Thiolase, N-terminal domain K08M3_43060 PF02803 Thiolase, C-terminal domain K08M3_43070 PF09278 MerR, DNA binding K08M3_43070 PF00376 MerR family regulatory protein K08M3_43080 PF02770 Acyl-CoA dehydrogenase, middle domain K08M3_43080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K08M3_43080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K08M3_43090 PF01039 Carboxyl transferase domain K08M3_43100 PF00378 Enoyl-CoA hydratase/isomerase K08M3_43110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K08M3_43110 PF02785 Biotin carboxylase C-terminal domain K08M3_43110 PF00364 Biotin-requiring enzyme K08M3_43110 PF00289 Biotin carboxylase, N-terminal domain K08M3_43120 PF00682 HMGL-like K08M3_43140 PF12795 Mechanosensitive ion channel porin domain K08M3_43140 PF12794 Mechanosensitive ion channel inner membrane domain 1 K08M3_43140 PF00924 Mechanosensitive ion channel K08M3_43150 PF14602 Hexapeptide repeat of succinyl-transferase K08M3_43150 PF12464 Maltose acetyltransferase K08M3_43160 PF00392 Bacterial regulatory proteins, gntR family K08M3_43160 PF00155 Aminotransferase class I and II K08M3_43170 PF01654 Cytochrome bd terminal oxidase subunit I K08M3_43180 PF02322 Cytochrome bd terminal oxidase subunit II K08M3_43200 PF02567 Phenazine biosynthesis-like protein K08M3_43220 PF13086 AAA domain K08M3_43220 PF13195 Protein of unknown function (DUF4011) K08M3_43220 PF13086 AAA domain K08M3_43220 PF13087 AAA domain K08M3_43220 PF13195 Protein of unknown function (DUF4011) K08M3_43220 PF13087 AAA domain K08M3_43230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_43230 PF03466 LysR substrate binding domain K08M3_43240 PF03306 Alpha-acetolactate decarboxylase K08M3_43250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K08M3_43250 PF00205 Thiamine pyrophosphate enzyme, central domain K08M3_43250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K08M3_43270 PF05724 Thiopurine S-methyltransferase (TPMT) K08M3_43280 PF00501 AMP-binding enzyme K08M3_43280 PF14535 AMP-binding enzyme C-terminal domain K08M3_43290 PF00005 ABC transporter K08M3_43330 PF00501 AMP-binding enzyme K08M3_43340 PF00005 ABC transporter K08M3_43340 PF12399 Branched-chain amino acid ATP-binding cassette transporter K08M3_43360 PF01012 Electron transfer flavoprotein domain K08M3_43370 PF01012 Electron transfer flavoprotein domain K08M3_43370 PF00766 Electron transfer flavoprotein FAD-binding domain K08M3_43380 PF00501 AMP-binding enzyme K08M3_43380 PF13193 AMP-binding enzyme C-terminal domain K08M3_43390 PF02378 Phosphotransferase system, EIIC K08M3_43390 PF00367 phosphotransferase system, EIIB K08M3_43400 PF11975 Family 4 glycosyl hydrolase C-terminal domain K08M3_43400 PF02056 Family 4 glycosyl hydrolase K08M3_43410 PF07702 UTRA domain K08M3_43410 PF00392 Bacterial regulatory proteins, gntR family K08M3_43420 PF03334 Na+/H+ antiporter subunit K08M3_43430 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) K08M3_43460 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L K08M3_43470 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus K08M3_43470 PF13244 Domain of unknown function (DUF4040) K08M3_43470 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter K08M3_43470 PF00361 Proton-conducting membrane transporter K08M3_43490 PF00582 Universal stress protein family K08M3_43500 PF00106 short chain dehydrogenase K08M3_43510 PF03466 LysR substrate binding domain K08M3_43510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_43530 PF07690 Major Facilitator Superfamily K08M3_43660 PF01037 Lrp/AsnC ligand binding domain K08M3_43730 PF00069 Protein kinase domain K08M3_43780 PF04717 Type VI secretion system, phage-baseplate injector K08M3_43790 PF05638 Type VI secretion system effector, Hcp K08M3_43800 PF07724 AAA domain (Cdc48 subfamily) K08M3_43800 PF10431 C-terminal, D2-small domain, of ClpB protein K08M3_43800 PF17871 AAA lid domain K08M3_43800 PF00004 ATPase family associated with various cellular activities (AAA) K08M3_43810 PF02954 Bacterial regulatory protein, Fis family K08M3_43810 PF00158 Sigma-54 interaction domain K08M3_43860 PF01551 Peptidase family M23 K08M3_43860 PF08525 Opacity-associated protein A N-terminal motif K08M3_43860 PF01476 LysM domain K08M3_43870 PF00132 Bacterial transferase hexapeptide (six repeats) K08M3_43880 PF00144 Beta-lactamase K08M3_43890 PF00392 Bacterial regulatory proteins, gntR family K08M3_43920 PF01370 NAD dependent epimerase/dehydratase family K08M3_43920 PF02911 Formyl transferase, C-terminal domain K08M3_43920 PF00551 Formyl transferase K08M3_43970 PF08031 Berberine and berberine like K08M3_43970 PF01565 FAD binding domain K08M3_43990 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family K08M3_44000 PF00478 IMP dehydrogenase / GMP reductase domain K08M3_44010 PF01256 Carbohydrate kinase K08M3_44010 PF03853 YjeF-related protein N-terminus K08M3_44030 PF00072 Response regulator receiver domain K08M3_44040 PF00248 Aldo/keto reductase family K08M3_44070 PF00654 Voltage gated chloride channel K08M3_44090 PF01227 GTP cyclohydrolase I K08M3_44100 PF03453 MoeA N-terminal region (domain I and II) K08M3_44100 PF03454 MoeA C-terminal region (domain IV) K08M3_44100 PF00994 Probable molybdopterin binding domain K08M3_44110 PF00899 ThiF family K08M3_44140 PF00581 Rhodanese-like domain K08M3_44160 PF00923 Transaldolase/Fructose-6-phosphate aldolase K08M3_44170 PF02779 Transketolase, pyrimidine binding domain K08M3_44170 PF02780 Transketolase, C-terminal domain K08M3_44170 PF00456 Transketolase, thiamine diphosphate binding domain K08M3_44180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_44180 PF08447 PAS fold K08M3_44190 PF07690 Major Facilitator Superfamily K08M3_44200 PF00793 DAHP synthetase I family K08M3_44210 PF00691 OmpA family K08M3_44210 PF01389 OmpA-like transmembrane domain K08M3_44220 PF13419 Haloacid dehalogenase-like hydrolase K08M3_44230 PF00472 RF-1 domain K08M3_44240 PF00672 HAMP domain K08M3_44240 PF12729 Four helix bundle sensory module for signal transduction K08M3_44240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_44250 PF00873 AcrB/AcrD/AcrF family K08M3_44260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_44270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K08M3_44280 PF01546 Peptidase family M20/M25/M40 K08M3_44280 PF07687 Peptidase dimerisation domain K08M3_44310 PF00196 Bacterial regulatory proteins, luxR family K08M3_44310 PF00072 Response regulator receiver domain K08M3_44320 PF07730 Histidine kinase K08M3_44320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_44320 PF00672 HAMP domain K08M3_44320 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term K08M3_44330 PF13187 4Fe-4S dicluster domain K08M3_44330 PF12838 4Fe-4S dicluster domain K08M3_44350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K08M3_44350 PF00384 Molybdopterin oxidoreductase K08M3_44350 PF01568 Molydopterin dinucleotide binding domain K08M3_44360 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) K08M3_44370 PF03264 NapC/NirT cytochrome c family, N-terminal region K08M3_44390 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus K08M3_44410 PF02803 Thiolase, C-terminal domain K08M3_44410 PF00108 Thiolase, N-terminal domain K08M3_44420 PF00106 short chain dehydrogenase K08M3_44430 PF01810 LysE type translocator K08M3_44450 PF07549 SecD/SecF GG Motif K08M3_44450 PF02355 Protein export membrane protein K08M3_44460 PF07549 SecD/SecF GG Motif K08M3_44460 PF13721 SecD export protein N-terminal TM region K08M3_44460 PF02355 Protein export membrane protein K08M3_44510 PF01037 Lrp/AsnC ligand binding domain K08M3_44550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_44550 PF00529 HlyD membrane-fusion protein of T1SS K08M3_44560 PF01047 MarR family K08M3_44570 PF00072 Response regulator receiver domain K08M3_44570 PF09308 LuxQ, periplasmic K08M3_44570 PF00512 His Kinase A (phospho-acceptor) domain K08M3_44570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_44580 PF13407 Periplasmic binding protein domain K08M3_44590 PF01541 GIY-YIG catalytic domain K08M3_44600 PF04337 Protein of unknown function, DUF480 K08M3_44620 PF04363 Protein of unknown function (DUF496) K08M3_44630 PF01554 MatE K08M3_44640 PF01627 Hpt domain K08M3_44640 PF00672 HAMP domain K08M3_44640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_44640 PF00512 His Kinase A (phospho-acceptor) domain K08M3_44640 PF00072 Response regulator receiver domain K08M3_44640 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K08M3_44650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K08M3_44650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M3_44700 PF03466 LysR substrate binding domain K08M3_44700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_44720 PF13520 Amino acid permease K08M3_44730 PF00392 Bacterial regulatory proteins, gntR family K08M3_44730 PF00155 Aminotransferase class I and II K08M3_44750 PF16527 Two-component sensor protein CpxA, periplasmic domain K08M3_44750 PF00672 HAMP domain K08M3_44750 PF00512 His Kinase A (phospho-acceptor) domain K08M3_44750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_44760 PF00072 Response regulator receiver domain K08M3_44760 PF00486 Transcriptional regulatory protein, C terminal K08M3_44790 PF12833 Helix-turn-helix domain K08M3_44790 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term K08M3_44810 PF00529 HlyD membrane-fusion protein of T1SS K08M3_44810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_44820 PF03109 ABC1 family K08M3_44830 PF00571 CBS domain K08M3_44830 PF01769 Divalent cation transporter K08M3_44830 PF03448 MgtE intracellular N domain K08M3_44840 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin K08M3_44850 PF07969 Amidohydrolase family K08M3_44860 PF01966 HD domain K08M3_44880 PF07690 Major Facilitator Superfamily K08M3_44900 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K08M3_44910 PF00255 Glutathione peroxidase K08M3_44940 PF01323 DSBA-like thioredoxin domain K08M3_44970 PF00486 Transcriptional regulatory protein, C terminal K08M3_44970 PF00072 Response regulator receiver domain K08M3_44980 PF00512 His Kinase A (phospho-acceptor) domain K08M3_44980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_44980 PF00672 HAMP domain K08M3_44980 PF16527 Two-component sensor protein CpxA, periplasmic domain K08M3_45000 PF01219 Prokaryotic diacylglycerol kinase K08M3_45010 PF08019 Phosphoethanolamine transferase EptA/EptB K08M3_45010 PF00884 Sulfatase K08M3_45020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K08M3_45050 PF01734 Patatin-like phospholipase K08M3_45060 PF05726 Pirin C-terminal cupin domain K08M3_45060 PF02678 Pirin K08M3_45070 PF00313 'Cold-shock' DNA-binding domain K08M3_45100 PF00962 Adenosine/AMP deaminase K08M3_45110 PF08534 Redoxin K08M3_45110 PF00462 Glutaredoxin K08M3_45130 PF07943 Penicillin-binding protein 5, C-terminal domain K08M3_45130 PF00768 D-alanyl-D-alanine carboxypeptidase K08M3_45150 PF02798 Glutathione S-transferase, N-terminal domain K08M3_45160 PF08244 Glycosyl hydrolases family 32 C terminal K08M3_45160 PF00251 Glycosyl hydrolases family 32 N-terminal domain K08M3_45170 PF00294 pfkB family carbohydrate kinase K08M3_45180 PF00367 phosphotransferase system, EIIB K08M3_45180 PF02378 Phosphotransferase system, EIIC K08M3_45190 PF00356 Bacterial regulatory proteins, lacI family K08M3_45200 PF02264 LamB porin K08M3_45200 PF11471 Maltoporin periplasmic N-terminal extension K08M3_45280 PF00106 short chain dehydrogenase K08M3_45290 PF03466 LysR substrate binding domain K08M3_45290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_45300 PF01497 Periplasmic binding protein K08M3_45300 PF12833 Helix-turn-helix domain K08M3_45310 PF00155 Aminotransferase class I and II K08M3_45350 PF00271 Helicase conserved C-terminal domain K08M3_45350 PF00270 DEAD/DEAH box helicase K08M3_45370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_45370 PF03466 LysR substrate binding domain K08M3_45380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_45380 PF03466 LysR substrate binding domain K08M3_45400 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M3_45410 PF00107 Zinc-binding dehydrogenase K08M3_45410 PF08240 Alcohol dehydrogenase GroES-like domain K08M3_45450 PF00392 Bacterial regulatory proteins, gntR family K08M3_45450 PF00155 Aminotransferase class I and II K08M3_45460 PF01321 Creatinase/Prolidase N-terminal domain K08M3_45460 PF00557 Metallopeptidase family M24 K08M3_45470 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K08M3_45480 PF01037 Lrp/AsnC ligand binding domain K08M3_45490 PF00171 Aldehyde dehydrogenase family K08M3_45500 PF00202 Aminotransferase class-III K08M3_45510 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) K08M3_45540 PF03466 LysR substrate binding domain K08M3_45540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_45560 PF17763 Glutaminase/Asparaginase C-terminal domain K08M3_45560 PF00710 Asparaginase, N-terminal K08M3_45570 PF03618 Kinase/pyrophosphorylase K08M3_45580 PF02896 PEP-utilising enzyme, TIM barrel domain K08M3_45580 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K08M3_45580 PF00391 PEP-utilising enzyme, mobile domain K08M3_45600 PF00196 Bacterial regulatory proteins, luxR family K08M3_45600 PF00072 Response regulator receiver domain K08M3_45610 PF00579 tRNA synthetases class I (W and Y) K08M3_45620 PF13416 Bacterial extracellular solute-binding protein K08M3_45650 PF02837 Glycosyl hydrolases family 2, sugar binding domain K08M3_45650 PF02836 Glycosyl hydrolases family 2, TIM barrel domain K08M3_45650 PF00703 Glycosyl hydrolases family 2 K08M3_45650 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 K08M3_45660 PF02028 BCCT, betaine/carnitine/choline family transporter K08M3_45670 PF07702 UTRA domain K08M3_45670 PF00392 Bacterial regulatory proteins, gntR family K08M3_45720 PF08402 TOBE domain K08M3_45720 PF00005 ABC transporter K08M3_45760 PF00873 AcrB/AcrD/AcrF family K08M3_45800 PF00873 AcrB/AcrD/AcrF family K08M3_45820 PF13091 PLD-like domain K08M3_45830 PF00398 Ribosomal RNA adenine dimethylase K08M3_45870 PF00376 MerR family regulatory protein K08M3_45870 PF09278 MerR, DNA binding K08M3_45890 PF03466 LysR substrate binding domain K08M3_45890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_45910 PF13378 Enolase C-terminal domain-like K08M3_45910 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K08M3_45920 PF00009 Elongation factor Tu GTP binding domain K08M3_45920 PF03764 Elongation factor G, domain IV K08M3_45920 PF14492 Elongation Factor G, domain II K08M3_45920 PF00679 Elongation factor G C-terminus K08M3_45920 PF03144 Elongation factor Tu domain 2 K08M3_45970 PF02001 Protein of unknown function DUF134 K08M3_45980 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_45990 PF00005 ABC transporter K08M3_45990 PF00571 CBS domain K08M3_46000 PF04170 NlpE N-terminal domain K08M3_46000 PF17185 NlpE C-terminal OB domain K08M3_46010 PF06629 MltA-interacting protein MipA K08M3_46040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_46040 PF03466 LysR substrate binding domain K08M3_46090 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain K08M3_46090 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family K08M3_46110 PF00857 Isochorismatase family K08M3_46140 PF00455 DeoR C terminal sensor domain K08M3_46140 PF08220 DeoR-like helix-turn-helix domain K08M3_46150 PF01641 SelR domain K08M3_46150 PF01625 Peptide methionine sulfoxide reductase K08M3_46160 PF03060 Nitronate monooxygenase K08M3_46170 PF13520 Amino acid permease K08M3_46180 PF05985 Ethanolamine ammonia-lyase light chain (EutC) K08M3_46190 PF06751 Ethanolamine ammonia lyase large subunit (EutB) K08M3_46200 PF12833 Helix-turn-helix domain K08M3_46210 PF08359 YsiA-like protein, C-terminal region K08M3_46210 PF00440 Bacterial regulatory proteins, tetR family K08M3_46240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_46240 PF03466 LysR substrate binding domain K08M3_46250 PF01810 LysE type translocator K08M3_46270 PF00118 TCP-1/cpn60 chaperonin family K08M3_46280 PF00166 Chaperonin 10 Kd subunit K08M3_46290 PF00581 Rhodanese-like domain K08M3_46320 PF01070 FMN-dependent dehydrogenase K08M3_46390 PF00669 Bacterial flagellin N-terminal helical region K08M3_46420 PF01625 Peptide methionine sulfoxide reductase K08M3_46420 PF01641 SelR domain K08M3_46430 PF03060 Nitronate monooxygenase K08M3_46440 PF13520 Amino acid permease K08M3_46450 PF05985 Ethanolamine ammonia-lyase light chain (EutC) K08M3_46460 PF06751 Ethanolamine ammonia lyase large subunit (EutB) K08M3_46470 PF12833 Helix-turn-helix domain K08M3_46480 PF08359 YsiA-like protein, C-terminal region K08M3_46480 PF00440 Bacterial regulatory proteins, tetR family K08M3_46510 PF03466 LysR substrate binding domain K08M3_46510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_46520 PF01810 LysE type translocator K08M3_46540 PF00118 TCP-1/cpn60 chaperonin family K08M3_46550 PF00166 Chaperonin 10 Kd subunit K08M3_46560 PF00581 Rhodanese-like domain K08M3_46590 PF01070 FMN-dependent dehydrogenase K08M3_46630 PF00669 Bacterial flagellin N-terminal helical region K08M3_46640 PF00460 Flagella basal body rod protein K08M3_46640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_46650 PF10135 Rod binding protein K08M3_46650 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K08M3_46660 PF02119 Flagellar P-ring protein K08M3_46670 PF02107 Flagellar L-ring protein K08M3_46680 PF00460 Flagella basal body rod protein K08M3_46680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_46690 PF00460 Flagella basal body rod protein K08M3_46690 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_46700 PF07559 Flagellar basal body protein FlaE K08M3_46700 PF00460 Flagella basal body rod protein K08M3_46700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_46710 PF13860 FlgD Ig-like domain K08M3_46710 PF03963 Flagellar hook capping protein - N-terminal region K08M3_46710 PF13861 FlgD Tudor-like domain K08M3_46720 PF00460 Flagella basal body rod protein K08M3_46720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M3_46730 PF00460 Flagella basal body rod protein K08M3_46770 PF01464 Transglycosylase SLT domain K08M3_46780 PF00133 tRNA synthetases class I (I, L, M and V) K08M3_46780 PF08264 Anticodon-binding domain of tRNA K08M3_46820 PF03313 Serine dehydratase alpha chain K08M3_46820 PF03315 Serine dehydratase beta chain K08M3_46840 PF03466 LysR substrate binding domain K08M3_46840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_46850 PF03466 LysR substrate binding domain K08M3_46850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_46860 PF00691 OmpA family K08M3_46860 PF01389 OmpA-like transmembrane domain K08M3_46870 PF18027 Cytosolic carboxypeptidase N-terminal domain K08M3_46870 PF00246 Zinc carboxypeptidase K08M3_46880 PF01266 FAD dependent oxidoreductase K08M3_46900 PF04393 Protein of unknown function (DUF535) K08M3_46930 PF00392 Bacterial regulatory proteins, gntR family K08M3_46930 PF07702 UTRA domain K08M3_46940 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_46950 PF00005 ABC transporter K08M3_46980 PF00266 Aminotransferase class-V K08M3_47000 PF13419 Haloacid dehalogenase-like hydrolase K08M3_47010 PF00356 Bacterial regulatory proteins, lacI family K08M3_47020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M3_47040 PF03611 PTS system sugar-specific permease component K08M3_47070 PF00657 GDSL-like Lipase/Acylhydrolase K08M3_47080 PF00440 Bacterial regulatory proteins, tetR family K08M3_47100 PF02321 Outer membrane efflux protein K08M3_47110 PF00005 ABC transporter K08M3_47110 PF12704 MacB-like periplasmic core domain K08M3_47110 PF02687 FtsX-like permease family K08M3_47120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M3_47130 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K08M3_47140 PF00194 Eukaryotic-type carbonic anhydrase K08M3_47150 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) K08M3_47180 PF13419 Haloacid dehalogenase-like hydrolase K08M3_47190 PF03466 LysR substrate binding domain K08M3_47190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_47250 PF12464 Maltose acetyltransferase K08M3_47250 PF14602 Hexapeptide repeat of succinyl-transferase K08M3_47260 PF02566 OsmC-like protein K08M3_47270 PF01641 SelR domain K08M3_47270 PF01625 Peptide methionine sulfoxide reductase K08M3_47290 PF04244 Deoxyribodipyrimidine photo-lyase-related protein K08M3_47300 PF00875 DNA photolyase K08M3_47300 PF03441 FAD binding domain of DNA photolyase K08M3_47310 PF00990 Diguanylate cyclase, GGDEF domain K08M3_47340 PF00990 Diguanylate cyclase, GGDEF domain K08M3_47340 PF05230 MASE2 domain K08M3_47370 PF01773 Na+ dependent nucleoside transporter N-terminus K08M3_47370 PF07670 Nucleoside recognition K08M3_47370 PF07662 Na+ dependent nucleoside transporter C-terminus K08M3_47400 PF01212 Beta-eliminating lyase K08M3_47420 PF03116 NQR2, RnfD, RnfE family K08M3_47430 PF01654 Cytochrome bd terminal oxidase subunit I K08M3_47440 PF02322 Cytochrome bd terminal oxidase subunit II K08M3_47470 PF00182 Chitinase class I K08M3_47480 PF01266 FAD dependent oxidoreductase K08M3_47520 PF05525 Branched-chain amino acid transport protein K08M3_47530 PF00990 Diguanylate cyclase, GGDEF domain K08M3_47540 PF00158 Sigma-54 interaction domain K08M3_47540 PF02954 Bacterial regulatory protein, Fis family K08M3_47540 PF00072 Response regulator receiver domain K08M3_47550 PF13426 PAS domain K08M3_47550 PF00072 Response regulator receiver domain K08M3_47550 PF08448 PAS fold K08M3_47550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_47550 PF00512 His Kinase A (phospho-acceptor) domain K08M3_47560 PF00232 Glycosyl hydrolase family 1 K08M3_47590 PF03466 LysR substrate binding domain K08M3_47590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_47610 PF12706 Beta-lactamase superfamily domain K08M3_47630 PF18030 RimK PreATP-grasp domain K08M3_47630 PF08443 RimK-like ATP-grasp domain K08M3_47640 PF08443 RimK-like ATP-grasp domain K08M3_47640 PF18030 RimK PreATP-grasp domain K08M3_47650 PF00753 Metallo-beta-lactamase superfamily K08M3_47660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K08M3_47660 PF17944 Arginine decarboxylase C-terminal helical extension K08M3_47660 PF17810 Arginine decarboxylase helical bundle domain K08M3_47670 PF00491 Arginase family K08M3_47680 PF07690 Major Facilitator Superfamily K08M3_47690 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K08M3_47690 PF00326 Prolyl oligopeptidase family K08M3_47720 PF00950 ABC 3 transport family K08M3_47730 PF00005 ABC transporter K08M3_47740 PF01297 Zinc-uptake complex component A periplasmic K08M3_47820 PF02472 Biopolymer transport protein ExbD/TolR K08M3_47830 PF01618 MotA/TolQ/ExbB proton channel family K08M3_47840 PF01618 MotA/TolQ/ExbB proton channel family K08M3_47860 PF07715 TonB-dependent Receptor Plug Domain K08M3_47860 PF00593 TonB dependent receptor K08M3_47870 PF00672 HAMP domain K08M3_47870 PF00512 His Kinase A (phospho-acceptor) domain K08M3_47870 PF16750 Sensor domain of 2-component histidine kinase K08M3_47870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_47880 PF00486 Transcriptional regulatory protein, C terminal K08M3_47880 PF00072 Response regulator receiver domain K08M3_47890 PF03009 Glycerophosphoryl diester phosphodiesterase family K08M3_47910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K08M3_47910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M3_47920 PF10928 Protein of unknown function (DUF2810) K08M3_48030 PF04013 Putative SAM-dependent RNA methyltransferase K08M3_48040 PF01523 Putative modulator of DNA gyrase K08M3_48050 PF01523 Putative modulator of DNA gyrase K08M3_48060 PF08543 Phosphomethylpyrimidine kinase K08M3_48070 PF00005 ABC transporter K08M3_48080 PF00528 Binding-protein-dependent transport system inner membrane component K08M3_48090 PF09084 NMT1/THI5 like K08M3_48100 PF03070 TENA/THI-4/PQQC family K08M3_48110 PF02110 Hydroxyethylthiazole kinase family K08M3_48120 PF02581 Thiamine monophosphate synthase K08M3_48140 PF01568 Molydopterin dinucleotide binding domain K08M3_48140 PF00384 Molybdopterin oxidoreductase K08M3_48140 PF18364 Molybdopterin oxidoreductase N-terminal domain K08M3_48150 PF03264 NapC/NirT cytochrome c family, N-terminal region K08M3_48160 PF13302 Acetyltransferase (GNAT) domain K08M3_48200 PF00583 Acetyltransferase (GNAT) family K08M3_48240 PF00392 Bacterial regulatory proteins, gntR family K08M3_48240 PF00155 Aminotransferase class I and II K08M3_48250 PF02595 Glycerate kinase family K08M3_48260 PF02447 GntP family permease K08M3_48270 PF13556 PucR C-terminal helix-turn-helix domain K08M3_48270 PF17853 GGDEF-like domain K08M3_48270 PF05651 Putative sugar diacid recognition K08M3_48340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M3_48350 PF12706 Beta-lactamase superfamily domain K08M3_48380 PF07690 Major Facilitator Superfamily K08M3_48390 PF13533 Biotin-lipoyl like K08M3_48400 PF03922 OmpW family K08M3_48420 PF13599 Pentapeptide repeats (9 copies) K08M3_48460 PF01037 Lrp/AsnC ligand binding domain K08M3_48470 PF01810 LysE type translocator K08M3_48480 PF08021 Siderophore-interacting FAD-binding domain K08M3_48480 PF04954 Siderophore-interacting protein K08M3_48490 PF03466 LysR substrate binding domain K08M3_48490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_48500 PF00797 N-acetyltransferase K08M3_48510 PF00107 Zinc-binding dehydrogenase K08M3_48510 PF08240 Alcohol dehydrogenase GroES-like domain K08M3_48520 PF00756 Putative esterase K08M3_48560 PF00990 Diguanylate cyclase, GGDEF domain K08M3_48560 PF17152 Periplasmic sensor domain K08M3_48590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_48590 PF03466 LysR substrate binding domain K08M3_48620 PF00849 RNA pseudouridylate synthase K08M3_48630 PF01554 MatE K08M3_48640 PF00563 EAL domain K08M3_48640 PF00990 Diguanylate cyclase, GGDEF domain K08M3_48660 PF06865 Pyrimidine/purine nucleoside phosphorylase K08M3_48680 PF00704 Glycosyl hydrolases family 18 K08M3_48680 PF08329 Chitinase A, N-terminal domain K08M3_48690 PF12697 Alpha/beta hydrolase family K08M3_48730 PF03600 Citrate transporter K08M3_48750 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 K08M3_48770 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K08M3_48770 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K08M3_48780 PF02805 Metal binding domain of Ada K08M3_48780 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K08M3_48780 PF12833 Helix-turn-helix domain K08M3_48780 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K08M3_48800 PF07681 DoxX K08M3_48810 PF17954 Quercetinase C-terminal cupin domain K08M3_48810 PF02678 Pirin K08M3_48820 PF03466 LysR substrate binding domain K08M3_48820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M3_48850 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K08M3_48870 PF03616 Sodium/glutamate symporter K08M3_48880 PF00155 Aminotransferase class I and II K08M3_48880 PF00392 Bacterial regulatory proteins, gntR family K08M3_48890 PF00005 ABC transporter K08M3_48910 PF03616 Sodium/glutamate symporter K08M3_48940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M3_48940 PF00672 HAMP domain K08M3_48940 PF17200 Single Cache domain 2 K08M3_48950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K08M3_48970 PF04397 LytTr DNA-binding domain K08M3_48970 PF00072 Response regulator receiver domain K08M3_48980 PF13492 GAF domain K08M3_48980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_48980 PF06580 Histidine kinase K08M3_48980 PF07694 5TMR of 5TMR-LYT K08M3_49020 PF00005 ABC transporter K08M3_49040 PF01098 Cell cycle protein K08M3_49050 PF01709 Transcriptional regulator K08M3_49070 PF17149 Periplasmic sensor domain found in signal transduction proteins K08M3_49070 PF00672 HAMP domain K08M3_49070 PF00072 Response regulator receiver domain K08M3_49070 PF01627 Hpt domain K08M3_49070 PF00512 His Kinase A (phospho-acceptor) domain K08M3_49070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M3_49090 PF00925 GTP cyclohydrolase II K08M3_49090 PF08719 Domain of unknown function (DUF1768) K08M3_49110 PF00005 ABC transporter K08M3_49110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_49120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M3_49120 PF00005 ABC transporter K08M3_49700 PF05016 ParE toxin of type II toxin-antitoxin system, parDE K08M3_50070 PF01807 CHC2 zinc finger K08M3_50070 PF13662 Toprim domain K08M3_50070 PF08275 DNA primase catalytic core, N-terminal domain K08M3_50300 PF01131 DNA topoisomerase K08M3_50300 PF08272 Topoisomerase I zinc-ribbon-like K08M3_50300 PF01396 Topoisomerase DNA binding C4 zinc finger K08M3_50300 PF01751 Toprim domain K08M3_50410 PF00437 Type II/IV secretion system protein K08M3_50510 PF00437 Type II/IV secretion system protein K08M3_50510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K08M3_50530 PF07963 Prokaryotic N-terminal methylation motif K08M3_50530 PF00114 Pilin (bacterial filament) K08M3_50800 PF00816 H-NS histone family K08M3_50880 PF03707 Bacterial signalling protein N terminal repeat K08M3_50880 PF00563 EAL domain K08M3_50880 PF00990 Diguanylate cyclase, GGDEF domain K08M3_51350 PF01145 SPFH domain / Band 7 family K08M3_51360 PF01145 SPFH domain / Band 7 family K08M3_51390 PF13438 Domain of unknown function (DUF4113) K08M3_51390 PF00817 impB/mucB/samB family K08M3_51390 PF11799 impB/mucB/samB family C-terminal domain K08M3_51430 PF07669 Eco57I restriction-modification methylase K08M3_51470 PF00990 Diguanylate cyclase, GGDEF domain K08M3_51470 PF00360 Phytochrome region K08M3_51470 PF01590 GAF domain K08M3_51470 PF00563 EAL domain K08M3_51800 PF00990 Diguanylate cyclase, GGDEF domain K08M3_51800 PF01590 GAF domain K08M3_51800 PF00563 EAL domain K08M3_51800 PF00360 Phytochrome region K08M3_52030 PF01807 CHC2 zinc finger K08M3_52030 PF08275 DNA primase catalytic core, N-terminal domain K08M3_52030 PF13662 Toprim domain K08M3_52270 PF00580 UvrD/REP helicase N-terminal domain K08M3_52270 PF13361 UvrD-like helicase C-terminal domain