K08M3_00010 SM00382 ATPases associated with a variety of cellular activities K08M3_00010 SM00760 Bacterial dnaA protein helix-turn-helix domain K08M3_00020 SM00480 DNA polymerase III beta subunit K08M3_00040 SM00387 Histidine kinase-like ATPases K08M3_00040 SM00433 TopoisomeraseII K08M3_00090 SM00642 Alpha-amylase domain K08M3_00170 SM00829 Enoylreductase K08M3_00430 SM00382 ATPases associated with a variety of cellular activities K08M3_00480 SM00354 helix_turn _helix lactose operon repressor K08M3_00610 SM00344 helix_turn_helix ASNC type K08M3_00620 SM00052 Putative diguanylate phosphodiesterase K08M3_00620 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K08M3_00620 SM00091 PAS domain K08M3_00620 SM00267 diguanylate cyclase K08M3_00700 SM00382 ATPases associated with a variety of cellular activities K08M3_00710 SM00749 bacterial OsmY and nodulation domain K08M3_00750 SM00046 Diacylglycerol kinase catalytic domain (presumed) K08M3_00750 SM00195 Dual specificity phosphatase, catalytic domain K08M3_00750 SM00404 Protein tyrosine phosphatase, catalytic domain motif K08M3_00820 SM00052 Putative diguanylate phosphodiesterase K08M3_00820 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K08M3_00820 SM00091 PAS domain K08M3_00820 SM00267 diguanylate cyclase K08M3_00920 SM01004 Delta-aminolevulinic acid dehydratase K08M3_00950 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs K08M3_00950 SM00474 3'-5' exonuclease K08M3_00950 SM00475 5'-3' exonuclease K08M3_00950 SM00482 DNA polymerase A domain K08M3_01010 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_01030 SM00052 Putative diguanylate phosphodiesterase K08M3_01030 SM00267 diguanylate cyclase K08M3_01030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_01040 SM00382 ATPases associated with a variety of cellular activities K08M3_01040 SM00448 cheY-homologous receiver domain K08M3_01050 SM00091 PAS domain K08M3_01050 SM00387 Histidine kinase-like ATPases K08M3_01050 SM00388 His Kinase A (phosphoacceptor) domain K08M3_01070 SM01230 K08M3_01070 K08M3_01170 SM00363 S4 RNA-binding domain K08M3_01200 SM00382 ATPases associated with a variety of cellular activities K08M3_01360 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_01360 SM00732 Likely ribonuclease with RNase H fold. K08M3_01400 SM00448 cheY-homologous receiver domain K08M3_01400 SM00862 Transcriptional regulatory protein, C terminal K08M3_01410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_01410 SM00387 Histidine kinase-like ATPases K08M3_01410 SM00388 His Kinase A (phosphoacceptor) domain K08M3_01430 SM00487 DEAD-like helicases superfamily K08M3_01430 SM00490 helicase superfamily c-terminal domain K08M3_01450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K08M3_01450 SM00954 Region found in RelA / SpoT proteins K08M3_01460 SM01409 K08M3_01460 K08M3_01470 SM00072 Guanylate kinase homologues. K08M3_01480 SM00028 Tetratricopeptide repeats K08M3_01580 SM00382 ATPases associated with a variety of cellular activities K08M3_01590 SM00382 ATPases associated with a variety of cellular activities K08M3_01670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_01670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_01670 SM01049 K08M3_01670 K08M3_01720 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain K08M3_01720 SM01232 K08M3_01720 K08M3_01740 SM00672 Putative lipopolysaccharide-modifying enzyme. K08M3_02050 SM01002 Alanine dehydrogenase/PNT, C-terminal domain K08M3_02050 SM01003 Alanine dehydrogenase/PNT, N-terminal domain K08M3_02120 SM00849 Metallo-beta-lactamase superfamily K08M3_02120 SM01027 Beta-Casp domain K08M3_02210 SM00984 UDP binding domain K08M3_02410 SM00448 cheY-homologous receiver domain K08M3_02420 SM00091 PAS domain K08M3_02420 SM00387 Histidine kinase-like ATPases K08M3_02470 SM00764 Citrate lyase ligase C-terminal domain K08M3_02550 SM00382 ATPases associated with a variety of cellular activities K08M3_02550 SM01086 C-terminal, D2-small domain, of ClpB protein K08M3_02590 SM00354 helix_turn _helix lactose operon repressor K08M3_02600 SM00487 DEAD-like helicases superfamily K08M3_02600 SM00490 helicase superfamily c-terminal domain K08M3_02620 SM01403 K08M3_02620 K08M3_02660 SM01382 K08M3_02660 K08M3_02660 SM01383 K08M3_02660 K08M3_02690 SM00322 K homology RNA-binding domain K08M3_02730 SM01374 K08M3_02730 K08M3_02740 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. K08M3_02870 SM00363 S4 RNA-binding domain K08M3_02870 SM01390 K08M3_02870 K08M3_02880 SM00662 RNA polymerases D K08M3_02940 SM00487 DEAD-like helicases superfamily K08M3_02940 SM00490 helicase superfamily c-terminal domain K08M3_03060 SM00382 ATPases associated with a variety of cellular activities K08M3_03220 SM00382 ATPases associated with a variety of cellular activities K08M3_03400 SM00650 Ribosomal RNA adenine dimethylases K08M3_03440 SM00271 DnaJ molecular chaperone homology domain K08M3_03480 SM01329 K08M3_03480 K08M3_03490 SM00917 LeuA allosteric (dimerisation) domain K08M3_03510 SM00014 Acid phosphatase homologues K08M3_03570 SM00267 diguanylate cyclase K08M3_03580 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_03600 SM00420 helix_turn_helix, Deoxyribose operon repressor K08M3_03600 SM01134 K08M3_03600 K08M3_03640 SM01120 K08M3_03640 K08M3_03700 SM00563 Phosphate acyltransferases K08M3_03760 SM00400 zinc finger K08M3_03760 SM00493 K08M3_03760 K08M3_03760 SM00766 DNA primase DnaG DnaB-binding K08M3_03810 SM01207 K08M3_03810 K08M3_03820 SM00905 Dihydroneopterin aldolase K08M3_03860 SM00382 ATPases associated with a variety of cellular activities K08M3_03890 SM00287 Bacterial SH3 domain homologues K08M3_03920 SM00880 K08M3_03920 K08M3_03920 SM01118 K08M3_03920 K08M3_03940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_04020 SM00387 Histidine kinase-like ATPases K08M3_04020 SM00433 TopoisomeraseII K08M3_04030 SM00434 DNA Topoisomerase IV K08M3_04040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. K08M3_04050 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. K08M3_04170 SM00749 bacterial OsmY and nodulation domain K08M3_04330 SM00842 Cell division protein FtsA K08M3_04340 SM00864 Tubulin/FtsZ family, GTPase domain K08M3_04340 SM00865 Tubulin/FtsZ family, C-terminal domain K08M3_04370 SM00957 SecA DEAD-like domain K08M3_04370 SM00958 SecA preprotein cross-linking domain K08M3_04400 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain K08M3_04410 SM00851 MGS-like domain K08M3_04410 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K08M3_04550 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_04560 SM00091 PAS domain K08M3_04560 SM00267 diguanylate cyclase K08M3_04570 SM00073 Histidine Phosphotransfer domain K08M3_04570 SM00091 PAS domain K08M3_04570 SM00387 Histidine kinase-like ATPases K08M3_04570 SM00388 His Kinase A (phosphoacceptor) domain K08M3_04570 SM00448 cheY-homologous receiver domain K08M3_04590 SM00448 cheY-homologous receiver domain K08M3_04590 SM00862 Transcriptional regulatory protein, C terminal K08M3_04680 SM00518 AP endonuclease family 2 K08M3_04690 SM00986 Uracil DNA glycosylase superfamily K08M3_04690 SM00987 UreE urease accessory protein, C-terminal domain K08M3_04740 SM00487 DEAD-like helicases superfamily K08M3_04740 SM00490 helicase superfamily c-terminal domain K08M3_04810 SM00937 K08M3_04810 K08M3_04830 SM00382 ATPases associated with a variety of cellular activities K08M3_04880 SM00927 DNA mismatch repair enzyme MutH K08M3_04900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K08M3_04940 SM01154 K08M3_04940 K08M3_04970 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K08M3_05000 SM00904 Riboflavin kinase K08M3_05050 SM00226 Low molecular weight phosphatase family K08M3_05060 SM00448 cheY-homologous receiver domain K08M3_05060 SM00850 LytTr DNA-binding domain K08M3_05150 SM00830 Chorismate mutase type II K08M3_05180 SM00382 ATPases associated with a variety of cellular activities K08M3_05220 SM00830 Chorismate mutase type II K08M3_05240 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_05260 SM00363 S4 RNA-binding domain K08M3_05280 SM00382 ATPases associated with a variety of cellular activities K08M3_05280 SM01086 C-terminal, D2-small domain, of ClpB protein K08M3_05440 SM00448 cheY-homologous receiver domain K08M3_05440 SM00862 Transcriptional regulatory protein, C terminal K08M3_05450 SM00091 PAS domain K08M3_05450 SM00387 Histidine kinase-like ATPases K08M3_05450 SM00388 His Kinase A (phosphoacceptor) domain K08M3_05510 SM00382 ATPases associated with a variety of cellular activities K08M3_05590 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_05600 SM00020 Trypsin-like serine protease K08M3_05630 SM01323 K08M3_05630 K08M3_05740 SM00271 DnaJ molecular chaperone homology domain K08M3_05790 SM00562 K08M3_05790 K08M3_05810 SM00530 Helix-turn-helix XRE-family like proteins K08M3_05850 SM00564 beta-propeller repeat K08M3_05860 SM00382 ATPases associated with a variety of cellular activities K08M3_05900 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_05900 SM01240 K08M3_05900 K08M3_05930 SM00028 Tetratricopeptide repeats K08M3_06070 SM00495 Chitin-binding domain type 3 K08M3_06340 SM00271 DnaJ molecular chaperone homology domain K08M3_06420 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_06430 SM01211 K08M3_06430 K08M3_06540 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K08M3_06640 SM00861 Transketolase, pyrimidine binding domain K08M3_06690 SM00981 K08M3_06690 K08M3_06750 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs K08M3_06750 SM00475 5'-3' exonuclease K08M3_06770 SM00267 diguanylate cyclase K08M3_06780 SM00028 Tetratricopeptide repeats K08M3_06840 SM00382 ATPases associated with a variety of cellular activities K08M3_06840 SM00930 K08M3_06840 K08M3_06860 SM00354 helix_turn _helix lactose operon repressor K08M3_06880 SM00642 Alpha-amylase domain K08M3_06900 SM00862 Transcriptional regulatory protein, C terminal K08M3_06930 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_06960 SM00936 Penicillin-binding protein 5, C-terminal domain K08M3_07070 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_07070 SM01091 Transporter associated domain K08M3_07100 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_07340 SM01400 K08M3_07340 K08M3_07380 SM00937 K08M3_07380 K08M3_07450 SM00363 S4 RNA-binding domain K08M3_07460 SM00463 Small MutS-related domain K08M3_07510 SM01081 Putative carbohydrate binding domain K08M3_07660 SM00858 K08M3_07660 K08M3_07670 SM00260 Two component signalling adaptor domain K08M3_07670 SM00448 cheY-homologous receiver domain K08M3_07680 SM00138 Methyltransferase, chemotaxis proteins K08M3_07770 SM00047 Lysozyme subfamily 2 K08M3_07890 SM00771 ZipA, C-terminal domain (FtsZ-binding) K08M3_07900 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K08M3_07900 SM00292 breast cancer carboxy-terminal domain K08M3_07900 SM00532 Ligase N family K08M3_07950 SM00244 prohibitin homologues K08M3_08040 SM00028 Tetratricopeptide repeats K08M3_08100 SM00938 Nitrogen regulatory protein P-II K08M3_08110 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_08170 SM00862 Transcriptional regulatory protein, C terminal K08M3_08180 SM00387 Histidine kinase-like ATPases K08M3_08220 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. K08M3_08430 SM00861 Transketolase, pyrimidine binding domain K08M3_08460 SM00881 CoA binding domain K08M3_08480 SM00382 ATPases associated with a variety of cellular activities K08M3_08500 SM00342 helix_turn_helix, arabinose operon control protein K08M3_08510 SM00899 K08M3_08510 K08M3_08560 SM00836 DALR anticodon binding domain K08M3_08560 SM01016 Arginyl tRNA synthetase N terminal dom K08M3_08590 SM00020 Trypsin-like serine protease K08M3_08610 SM00487 DEAD-like helicases superfamily K08M3_08610 SM00491 K08M3_08610 K08M3_08670 SM00474 3'-5' exonuclease K08M3_08780 SM00825 Beta-ketoacyl synthase K08M3_08790 SM00822 K08M3_08790 K08M3_08810 SM00825 Beta-ketoacyl synthase K08M3_08930 SM00563 Phosphate acyltransferases K08M3_08990 SM00487 DEAD-like helicases superfamily K08M3_08990 SM00490 helicase superfamily c-terminal domain K08M3_09100 SM00382 ATPases associated with a variety of cellular activities K08M3_09100 SM00448 cheY-homologous receiver domain K08M3_09110 SM00387 Histidine kinase-like ATPases K08M3_09110 SM00388 His Kinase A (phosphoacceptor) domain K08M3_09140 SM00382 ATPases associated with a variety of cellular activities K08M3_09140 SM00994 ClpX C4-type zinc finger K08M3_09140 SM01086 C-terminal, D2-small domain, of ClpB protein K08M3_09150 SM00382 ATPases associated with a variety of cellular activities K08M3_09150 SM00464 Found in ATP-dependent protease La (LON) K08M3_09160 SM00411 bacterial (prokaryotic) histone like domain K08M3_09180 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K08M3_09200 SM01144 K08M3_09200 K08M3_09210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K08M3_09220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K08M3_09280 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K08M3_09320 SM00563 Phosphate acyltransferases K08M3_09340 SM00978 K08M3_09340 K08M3_09460 SM00344 helix_turn_helix ASNC type K08M3_09520 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_09520 SM00267 diguanylate cyclase K08M3_09540 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_09580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_09580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_09680 SM00487 DEAD-like helicases superfamily K08M3_09680 SM00490 helicase superfamily c-terminal domain K08M3_09680 SM00982 K08M3_09680 K08M3_09680 SM01058 CarD-like/TRCF domain K08M3_09710 SM00382 ATPases associated with a variety of cellular activities K08M3_09740 SM00849 Metallo-beta-lactamase superfamily K08M3_09750 SM00382 ATPases associated with a variety of cellular activities K08M3_09810 SM00763 PrkA AAA domain K08M3_09890 SM00382 ATPases associated with a variety of cellular activities K08M3_09900 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_09900 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K08M3_09930 SM01276 K08M3_09930 K08M3_09980 SM00491 K08M3_09980 K08M3_10040 SM00357 Cold shock protein domain K08M3_10060 SM00382 ATPases associated with a variety of cellular activities K08M3_10060 SM01086 C-terminal, D2-small domain, of ClpB protein K08M3_10070 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_10130 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain K08M3_10130 SM00437 Bacterial DNA topoisomerase I DNA-binding domain K08M3_10130 SM00493 K08M3_10130 K08M3_10200 SM00354 helix_turn _helix lactose operon repressor K08M3_10220 SM00448 cheY-homologous receiver domain K08M3_10220 SM00862 Transcriptional regulatory protein, C terminal K08M3_10380 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K08M3_10390 SM00382 ATPases associated with a variety of cellular activities K08M3_10500 SM00028 Tetratricopeptide repeats K08M3_10610 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K08M3_10620 SM00382 ATPases associated with a variety of cellular activities K08M3_10730 SM00028 Tetratricopeptide repeats K08M3_10800 SM00387 Histidine kinase-like ATPases K08M3_10800 SM00388 His Kinase A (phosphoacceptor) domain K08M3_10800 SM00448 cheY-homologous receiver domain K08M3_10920 SM00347 helix_turn_helix multiple antibiotic resistance protein K08M3_10980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_11030 SM01002 Alanine dehydrogenase/PNT, C-terminal domain K08M3_11030 SM01003 Alanine dehydrogenase/PNT, N-terminal domain K08M3_11040 SM00344 helix_turn_helix ASNC type K08M3_11050 SM00843 K08M3_11050 K08M3_11070 SM00382 ATPases associated with a variety of cellular activities K08M3_11130 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_11130 SM00876 Biotin and Thiamin Synthesis associated domain K08M3_11320 SM00528 Domain in histone-like proteins of HNS family K08M3_11430 SM00052 Putative diguanylate phosphodiesterase K08M3_11460 SM00840 K08M3_11460 K08M3_11610 SM01131 K08M3_11610 K08M3_11630 SM00382 ATPases associated with a variety of cellular activities K08M3_11640 SM00382 ATPases associated with a variety of cellular activities K08M3_11680 SM00382 ATPases associated with a variety of cellular activities K08M3_11790 SM00155 Phospholipase D. Active site motifs. K08M3_11850 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K08M3_11850 SM00382 ATPases associated with a variety of cellular activities K08M3_11880 SM00382 ATPases associated with a variety of cellular activities K08M3_11970 SM00387 Histidine kinase-like ATPases K08M3_11980 SM00448 cheY-homologous receiver domain K08M3_11980 SM00862 Transcriptional regulatory protein, C terminal K08M3_12000 SM00487 DEAD-like helicases superfamily K08M3_12000 SM00490 helicase superfamily c-terminal domain K08M3_12010 SM00363 S4 RNA-binding domain K08M3_12060 SM00382 ATPases associated with a variety of cellular activities K08M3_12250 SM00448 cheY-homologous receiver domain K08M3_12260 SM00387 Histidine kinase-like ATPases K08M3_12300 SM00382 ATPases associated with a variety of cellular activities K08M3_12310 SM00382 ATPases associated with a variety of cellular activities K08M3_12360 SM00267 diguanylate cyclase K08M3_12390 SM00919 Malic enzyme, NAD binding domain K08M3_12390 SM01274 K08M3_12390 K08M3_12400 SM00487 DEAD-like helicases superfamily K08M3_12400 SM00490 helicase superfamily c-terminal domain K08M3_12570 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_12570 SM00866 K08M3_12570 K08M3_12600 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain K08M3_12650 SM00530 Helix-turn-helix XRE-family like proteins K08M3_12720 SM00873 B3/4 domain K08M3_12720 SM00874 tRNA synthetase B5 domain K08M3_12720 SM00896 Ferredoxin-fold anticodon binding domain K08M3_12740 SM00411 bacterial (prokaryotic) histone like domain K08M3_12810 SM00479 K08M3_12810 K08M3_13330 SM00855 Phosphoglycerate mutase family K08M3_13370 SM00382 ATPases associated with a variety of cellular activities K08M3_13460 SM00245 tail specific protease K08M3_13480 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_13480 SM00895 K08M3_13480 K08M3_13540 SM01130 K08M3_13540 K08M3_13550 SM00382 ATPases associated with a variety of cellular activities K08M3_13590 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins K08M3_13610 SM00382 ATPases associated with a variety of cellular activities K08M3_13620 SM00382 ATPases associated with a variety of cellular activities K08M3_13890 SM01230 K08M3_13890 K08M3_13910 SM00530 Helix-turn-helix XRE-family like proteins K08M3_13980 SM00052 Putative diguanylate phosphodiesterase K08M3_14000 SM00347 helix_turn_helix multiple antibiotic resistance protein K08M3_14060 SM00387 Histidine kinase-like ATPases K08M3_14060 SM00388 His Kinase A (phosphoacceptor) domain K08M3_14060 SM00448 cheY-homologous receiver domain K08M3_14070 SM00052 Putative diguanylate phosphodiesterase K08M3_14070 SM00267 diguanylate cyclase K08M3_14090 SM00028 Tetratricopeptide repeats K08M3_14150 SM00857 Resolvase, N terminal domain K08M3_14160 SM00530 Helix-turn-helix XRE-family like proteins K08M3_14220 SM00857 Resolvase, N terminal domain K08M3_14510 SM00382 ATPases associated with a variety of cellular activities K08M3_14520 SM00100 Cyclic nucleotide-monophosphate binding domain K08M3_14520 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_14530 SM00479 K08M3_14530 K08M3_14600 SM00028 Tetratricopeptide repeats K08M3_14680 SM00382 ATPases associated with a variety of cellular activities K08M3_14730 SM00420 helix_turn_helix, Deoxyribose operon repressor K08M3_14730 SM01134 K08M3_14730 K08M3_14760 SM00267 diguanylate cyclase K08M3_14810 SM00100 Cyclic nucleotide-monophosphate binding domain K08M3_14810 SM00387 Histidine kinase-like ATPases K08M3_14820 SM00448 cheY-homologous receiver domain K08M3_14830 SM00052 Putative diguanylate phosphodiesterase K08M3_14830 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K08M3_14830 SM00091 PAS domain K08M3_14830 SM00267 diguanylate cyclase K08M3_14840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K08M3_14900 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. K08M3_14910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K08M3_14960 SM00382 ATPases associated with a variety of cellular activities K08M3_15010 SM00382 ATPases associated with a variety of cellular activities K08M3_15020 SM00382 ATPases associated with a variety of cellular activities K08M3_15130 SM00267 diguanylate cyclase K08M3_15130 SM01079 K08M3_15130 K08M3_15140 SM00479 K08M3_15140 K08M3_15220 SM00382 ATPases associated with a variety of cellular activities K08M3_15220 SM00487 DEAD-like helicases superfamily K08M3_15220 SM00490 helicase superfamily c-terminal domain K08M3_15220 SM00847 Helicase associated domain (HA2) Add an annotation K08M3_15370 SM00382 ATPases associated with a variety of cellular activities K08M3_15370 SM00448 cheY-homologous receiver domain K08M3_15500 SM00448 cheY-homologous receiver domain K08M3_15510 SM00267 diguanylate cyclase K08M3_15540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_15600 SM01144 K08M3_15600 K08M3_15630 SM00852 Probable molybdopterin binding domain K08M3_15650 SM00382 ATPases associated with a variety of cellular activities K08M3_15680 SM00382 ATPases associated with a variety of cellular activities K08M3_15680 SM00448 cheY-homologous receiver domain K08M3_15690 SM00387 Histidine kinase-like ATPases K08M3_15690 SM00388 His Kinase A (phosphoacceptor) domain K08M3_15700 SM00382 ATPases associated with a variety of cellular activities K08M3_15780 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K08M3_15910 SM00382 ATPases associated with a variety of cellular activities K08M3_15970 SM00100 Cyclic nucleotide-monophosphate binding domain K08M3_15970 SM00419 helix_turn_helix, cAMP Regulatory protein K08M3_16070 SM00897 FIST N domain K08M3_16070 SM01204 K08M3_16070 K08M3_16080 SM00387 Histidine kinase-like ATPases K08M3_16080 SM00388 His Kinase A (phosphoacceptor) domain K08M3_16080 SM00448 cheY-homologous receiver domain K08M3_16160 SM00382 ATPases associated with a variety of cellular activities K08M3_16180 SM00981 K08M3_16180 K08M3_16240 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. K08M3_16240 SM00245 tail specific protease K08M3_16250 SM00945 ProQ/FINO family K08M3_16270 SM00382 ATPases associated with a variety of cellular activities K08M3_16370 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_16410 SM00382 ATPases associated with a variety of cellular activities K08M3_16460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_16470 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase K08M3_16480 SM00327 von Willebrand factor (vWF) type A domain K08M3_16510 SM00112 Cadherin repeats. K08M3_16510 SM00237 Domains in Na-Ca exchangers and integrin-beta4 K08M3_16510 SM00327 von Willebrand factor (vWF) type A domain K08M3_16510 SM00736 Dystroglycan-type cadherin-like domains. K08M3_16550 SM00028 Tetratricopeptide repeats K08M3_16550 SM00267 diguanylate cyclase K08M3_16560 SM00346 helix_turn_helix isocitrate lyase regulation K08M3_16640 SM00829 Enoylreductase K08M3_16650 SM00342 helix_turn_helix, arabinose operon control protein K08M3_16670 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_16670 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K08M3_16690 SM00829 Enoylreductase K08M3_16710 SM00382 ATPases associated with a variety of cellular activities K08M3_16730 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_16730 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K08M3_16840 SM00530 Helix-turn-helix XRE-family like proteins K08M3_16890 SM00020 Trypsin-like serine protease K08M3_16890 SM00495 Chitin-binding domain type 3 K08M3_16960 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_16960 SM00895 K08M3_16960 K08M3_17160 SM00382 ATPases associated with a variety of cellular activities K08M3_17240 SM00342 helix_turn_helix, arabinose operon control protein K08M3_17440 SM00342 helix_turn_helix, arabinose operon control protein K08M3_17490 SM00382 ATPases associated with a variety of cellular activities K08M3_17520 SM01350 K08M3_17520 K08M3_17550 SM00342 helix_turn_helix, arabinose operon control protein K08M3_17550 SM00871 Bacterial transcription activator, effector binding domain K08M3_17570 SM00448 cheY-homologous receiver domain K08M3_17580 SM00091 PAS domain K08M3_17580 SM00387 Histidine kinase-like ATPases K08M3_17870 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain K08M3_17890 SM01266 K08M3_17890 K08M3_18180 SM00547 Zinc finger domain K08M3_18190 SM00507 HNH nucleases K08M3_18350 SM00267 diguanylate cyclase K08M3_18570 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K08M3_18600 SM00387 Histidine kinase-like ATPases K08M3_18600 SM00388 His Kinase A (phosphoacceptor) domain K08M3_18600 SM00448 cheY-homologous receiver domain K08M3_18620 SM00530 Helix-turn-helix XRE-family like proteins K08M3_18680 SM00342 helix_turn_helix, arabinose operon control protein K08M3_18750 SM00052 Putative diguanylate phosphodiesterase K08M3_18760 SM00421 helix_turn_helix, Lux Regulon K08M3_18760 SM00448 cheY-homologous receiver domain K08M3_18930 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_18930 SM00387 Histidine kinase-like ATPases K08M3_18930 SM00388 His Kinase A (phosphoacceptor) domain K08M3_18930 SM00448 cheY-homologous receiver domain K08M3_18940 SM00421 helix_turn_helix, Lux Regulon K08M3_18940 SM00448 cheY-homologous receiver domain K08M3_18970 SM00528 Domain in histone-like proteins of HNS family K08M3_18980 SM00344 helix_turn_helix ASNC type K08M3_19270 SM00091 PAS domain K08M3_19270 SM00382 ATPases associated with a variety of cellular activities K08M3_19330 SM00387 Histidine kinase-like ATPases K08M3_19330 SM00388 His Kinase A (phosphoacceptor) domain K08M3_19330 SM00448 cheY-homologous receiver domain K08M3_19380 SM00052 Putative diguanylate phosphodiesterase K08M3_19410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_19410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_19440 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_19490 SM00100 Cyclic nucleotide-monophosphate binding domain K08M3_19490 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_19500 SM00479 K08M3_19500 K08M3_19510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_19510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_19530 SM00347 helix_turn_helix multiple antibiotic resistance protein K08M3_19540 SM00421 helix_turn_helix, Lux Regulon K08M3_19540 SM00448 cheY-homologous receiver domain K08M3_19550 SM00387 Histidine kinase-like ATPases K08M3_19550 SM01049 K08M3_19550 K08M3_19610 SM00849 Metallo-beta-lactamase superfamily K08M3_19790 SM00434 DNA Topoisomerase IV K08M3_19840 SM00852 Probable molybdopterin binding domain K08M3_19950 SM00278 Helix-hairpin-helix DNA-binding motif class 1 K08M3_19950 SM00465 GIY-YIG type nucleases (URI domain) K08M3_19960 SM00421 helix_turn_helix, Lux Regulon K08M3_19960 SM00448 cheY-homologous receiver domain K08M3_19970 SM00486 DNA polymerase type-B family K08M3_19990 SM00841 Elongation factor P, C-terminal K08M3_19990 SM01185 K08M3_19990 K08M3_20010 SM00363 S4 RNA-binding domain K08M3_20040 SM00481 DNA polymerase alpha chain like domain K08M3_20120 SM00100 Cyclic nucleotide-monophosphate binding domain K08M3_20120 SM00419 helix_turn_helix, cAMP Regulatory protein K08M3_20160 SM00387 Histidine kinase-like ATPases K08M3_20160 SM00388 His Kinase A (phosphoacceptor) domain K08M3_20160 SM00448 cheY-homologous receiver domain K08M3_20260 SM00052 Putative diguanylate phosphodiesterase K08M3_20260 SM00091 PAS domain K08M3_20270 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_20330 SM00448 cheY-homologous receiver domain K08M3_20330 SM00862 Transcriptional regulatory protein, C terminal K08M3_20340 SM00387 Histidine kinase-like ATPases K08M3_20340 SM00388 His Kinase A (phosphoacceptor) domain K08M3_20440 SM00382 ATPases associated with a variety of cellular activities K08M3_20560 SM00421 helix_turn_helix, Lux Regulon K08M3_20560 SM00448 cheY-homologous receiver domain K08M3_20570 SM00387 Histidine kinase-like ATPases K08M3_20570 SM00388 His Kinase A (phosphoacceptor) domain K08M3_20600 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K08M3_20690 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family K08M3_20700 SM00028 Tetratricopeptide repeats K08M3_20720 SM00411 bacterial (prokaryotic) histone like domain K08M3_20730 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_20760 SM00822 K08M3_20760 K08M3_20790 SM00481 DNA polymerase alpha chain like domain K08M3_20800 SM00260 Two component signalling adaptor domain K08M3_20800 SM00448 cheY-homologous receiver domain K08M3_20950 SM00825 Beta-ketoacyl synthase K08M3_20970 SM00822 K08M3_20970 K08M3_20980 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. K08M3_21040 SM00363 S4 RNA-binding domain K08M3_21050 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_21070 SM00226 Low molecular weight phosphatase family K08M3_21160 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_21210 SM00267 diguanylate cyclase K08M3_21220 SM00642 Alpha-amylase domain K08M3_21230 SM00382 ATPases associated with a variety of cellular activities K08M3_21310 SM00382 ATPases associated with a variety of cellular activities K08M3_21320 SM00382 ATPases associated with a variety of cellular activities K08M3_21390 SM00852 Probable molybdopterin binding domain K08M3_21400 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_21430 SM00382 ATPases associated with a variety of cellular activities K08M3_21430 SM00448 cheY-homologous receiver domain K08M3_21440 SM00487 DEAD-like helicases superfamily K08M3_21440 SM00490 helicase superfamily c-terminal domain K08M3_21510 SM00900 K08M3_21510 K08M3_21530 SM00478 endonuclease III K08M3_21530 SM00525 K08M3_21530 K08M3_21570 SM00479 K08M3_21570 K08M3_21690 SM00859 Semialdehyde dehydrogenase, NAD binding domain K08M3_21800 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain K08M3_21800 SM00437 Bacterial DNA topoisomerase I DNA-binding domain K08M3_21800 SM00493 K08M3_21800 K08M3_21850 SM00870 K08M3_21850 K08M3_21890 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M3_21910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_21910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_21950 SM00098 Alkaline phosphatase homologues K08M3_22040 SM00493 K08M3_22040 K08M3_22060 SM00382 ATPases associated with a variety of cellular activities K08M3_22100 SM00448 cheY-homologous receiver domain K08M3_22190 SM00859 Semialdehyde dehydrogenase, NAD binding domain K08M3_22210 SM00825 Beta-ketoacyl synthase K08M3_22290 SM00463 Small MutS-related domain K08M3_22300 SM00855 Phosphoglycerate mutase family K08M3_22510 SM00382 ATPases associated with a variety of cellular activities K08M3_22530 SM00260 Two component signalling adaptor domain K08M3_22540 SM00260 Two component signalling adaptor domain K08M3_22560 SM00448 cheY-homologous receiver domain K08M3_22570 SM00073 Histidine Phosphotransfer domain K08M3_22570 SM00260 Two component signalling adaptor domain K08M3_22570 SM00387 Histidine kinase-like ATPases K08M3_22570 SM01231 K08M3_22570 K08M3_22590 SM00448 cheY-homologous receiver domain K08M3_22620 SM00382 ATPases associated with a variety of cellular activities K08M3_22620 SM00962 SRP54-type protein, GTPase domain K08M3_22750 SM00382 ATPases associated with a variety of cellular activities K08M3_22800 SM00382 ATPases associated with a variety of cellular activities K08M3_22800 SM00448 cheY-homologous receiver domain K08M3_22810 SM00387 Histidine kinase-like ATPases K08M3_22810 SM00388 His Kinase A (phosphoacceptor) domain K08M3_22820 SM00382 ATPases associated with a variety of cellular activities K08M3_23000 SM01130 K08M3_23000 K08M3_23080 SM00857 Resolvase, N terminal domain K08M3_23100 SM00382 ATPases associated with a variety of cellular activities K08M3_23250 SM00387 Histidine kinase-like ATPases K08M3_23250 SM00388 His Kinase A (phosphoacceptor) domain K08M3_23250 SM00448 cheY-homologous receiver domain K08M3_23290 SM00357 Cold shock protein domain K08M3_23340 SM00357 Cold shock protein domain K08M3_23360 SM00244 prohibitin homologues K08M3_23370 SM00244 prohibitin homologues K08M3_23400 SM00357 Cold shock protein domain K08M3_23460 SM00028 Tetratricopeptide repeats K08M3_23640 SM00479 K08M3_23640 K08M3_23670 SM00849 Metallo-beta-lactamase superfamily K08M3_23680 SM00257 Lysin motif K08M3_23710 SM00938 Nitrogen regulatory protein P-II K08M3_23730 SM00977 TilS substrate C-terminal domain K08M3_23750 SM00481 DNA polymerase alpha chain like domain K08M3_23810 SM00935 Outer membrane protein (OmpH-like) K08M3_23830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. K08M3_23920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K08M3_24030 SM00849 Metallo-beta-lactamase superfamily K08M3_24150 SM00495 Chitin-binding domain type 3 K08M3_24150 SM00636 K08M3_24150 K08M3_24180 SM00487 DEAD-like helicases superfamily K08M3_24180 SM00490 helicase superfamily c-terminal domain K08M3_24360 SM00487 DEAD-like helicases superfamily K08M3_24530 SM00267 diguanylate cyclase K08M3_24530 SM00448 cheY-homologous receiver domain K08M3_24590 SM00900 K08M3_24590 K08M3_24700 SM00464 Found in ATP-dependent protease La (LON) K08M3_24750 SM00267 diguanylate cyclase K08M3_24780 SM00925 MltA specific insert domain K08M3_25070 SM00420 helix_turn_helix, Deoxyribose operon repressor K08M3_25070 SM01134 K08M3_25070 K08M3_25130 SM00354 helix_turn _helix lactose operon repressor K08M3_25160 SM00421 helix_turn_helix, Lux Regulon K08M3_25250 SM00838 Elongation factor G C-terminus K08M3_25250 SM00889 Elongation factor G, domain IV K08M3_25260 SM00382 ATPases associated with a variety of cellular activities K08M3_25320 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain K08M3_25330 SM01133 K08M3_25330 K08M3_25430 SM00052 Putative diguanylate phosphodiesterase K08M3_25430 SM00091 PAS domain K08M3_25430 SM00267 diguanylate cyclase K08M3_25470 SM00347 helix_turn_helix multiple antibiotic resistance protein K08M3_25480 SM00028 Tetratricopeptide repeats K08M3_25490 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_25490 SM00322 K homology RNA-binding domain K08M3_25500 SM01387 K08M3_25500 K08M3_25540 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_25610 SM00382 ATPases associated with a variety of cellular activities K08M3_25630 SM01103 K08M3_25630 K08M3_25680 SM00363 S4 RNA-binding domain K08M3_25760 SM00091 PAS domain K08M3_25760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_25760 SM00387 Histidine kinase-like ATPases K08M3_25760 SM00388 His Kinase A (phosphoacceptor) domain K08M3_25760 SM00448 cheY-homologous receiver domain K08M3_25800 SM00382 ATPases associated with a variety of cellular activities K08M3_25810 SM00382 ATPases associated with a variety of cellular activities K08M3_25850 SM01068 Putative carbohydrate binding domain K08M3_25870 SM00382 ATPases associated with a variety of cellular activities K08M3_25910 SM00938 Nitrogen regulatory protein P-II K08M3_25960 SM00487 DEAD-like helicases superfamily K08M3_25960 SM00490 helicase superfamily c-terminal domain K08M3_25960 SM00847 Helicase associated domain (HA2) Add an annotation K08M3_26060 SM00382 ATPases associated with a variety of cellular activities K08M3_26080 SM00947 Carbonic anhydrase K08M3_26140 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_26140 SM00895 K08M3_26140 K08M3_26150 SM00644 K08M3_26150 K08M3_26280 SM00382 ATPases associated with a variety of cellular activities K08M3_26280 SM00962 SRP54-type protein, GTPase domain K08M3_26280 SM00963 SRP54-type protein, helical bundle domain K08M3_26300 SM01091 Transporter associated domain K08M3_26360 SM00829 Enoylreductase K08M3_26520 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain K08M3_26540 SM00382 ATPases associated with a variety of cellular activities K08M3_26560 SM00533 DNA-binding domain of DNA mismatch repair MUTS family K08M3_26560 SM00534 ATPase domain of DNA mismatch repair MUTS family K08M3_26580 SM00257 Lysin motif K08M3_26650 SM01192 K08M3_26650 K08M3_26650 SM01193 K08M3_26650 K08M3_26690 SM00954 Region found in RelA / SpoT proteins K08M3_26710 SM00073 Histidine Phosphotransfer domain K08M3_26710 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_26710 SM00387 Histidine kinase-like ATPases K08M3_26710 SM00388 His Kinase A (phosphoacceptor) domain K08M3_26710 SM00448 cheY-homologous receiver domain K08M3_26760 SM00358 Double-stranded RNA binding motif K08M3_26760 SM00535 Ribonuclease III family K08M3_26780 SM00838 Elongation factor G C-terminus K08M3_27030 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M3_27060 SM00861 Transketolase, pyrimidine binding domain K08M3_27090 SM00731 SprT homologues. K08M3_27140 SM00732 Likely ribonuclease with RNase H fold. K08M3_27160 SM00382 ATPases associated with a variety of cellular activities K08M3_27200 SM01152 K08M3_27200 K08M3_27230 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_27270 SM00478 endonuclease III K08M3_27270 SM00525 K08M3_27270 K08M3_27370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_27370 SM01049 K08M3_27370 K08M3_27520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K08M3_27530 SM00354 helix_turn _helix lactose operon repressor K08M3_27590 SM00495 Chitin-binding domain type 3 K08M3_27700 SM00347 helix_turn_helix multiple antibiotic resistance protein K08M3_27790 SM00563 Phosphate acyltransferases K08M3_27860 SM00382 ATPases associated with a variety of cellular activities K08M3_27880 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_27910 SM00382 ATPases associated with a variety of cellular activities K08M3_27970 SM00924 MgtE intracellular N domain K08M3_28030 SM00487 DEAD-like helicases superfamily K08M3_28030 SM00490 helicase superfamily c-terminal domain K08M3_28040 SM00670 Large family of predicted nucleotide-binding domains K08M3_28080 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_28220 SM00382 ATPases associated with a variety of cellular activities K08M3_28230 SM00028 Tetratricopeptide repeats K08M3_28250 SM00965 Secretin and TonB N terminus short domain K08M3_28290 SM00052 Putative diguanylate phosphodiesterase K08M3_28290 SM00267 diguanylate cyclase K08M3_28310 SM00421 helix_turn_helix, Lux Regulon K08M3_28390 SM01018 B12 binding domain K08M3_28630 SM01005 Alanine racemase, C-terminal domain K08M3_28750 SM00965 Secretin and TonB N terminus short domain K08M3_28790 SM00842 Cell division protein FtsA K08M3_28890 SM00859 Semialdehyde dehydrogenase, NAD binding domain K08M3_28970 SM00919 Malic enzyme, NAD binding domain K08M3_28970 SM01274 K08M3_28970 K08M3_29010 SM00838 Elongation factor G C-terminus K08M3_29010 SM00889 Elongation factor G, domain IV K08M3_29090 SM00320 WD40 repeats K08M3_29160 SM00382 ATPases associated with a variety of cellular activities K08M3_29210 SM00100 Cyclic nucleotide-monophosphate binding domain K08M3_29210 SM00419 helix_turn_helix, cAMP Regulatory protein K08M3_29220 SM01150 K08M3_29220 K08M3_29310 SM00967 RNA 2'-O ribose methyltransferase substrate binding K08M3_29320 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_29320 SM00357 Cold shock protein domain K08M3_29320 SM00955 K08M3_29320 K08M3_29350 SM00671 Sel1-like repeats. K08M3_29360 SM00788 Adenylosuccinate synthetase K08M3_29380 SM00244 prohibitin homologues K08M3_29390 SM00244 prohibitin homologues K08M3_29430 SM00853 MutL C terminal dimerisation domain K08M3_29430 SM01340 K08M3_29430 K08M3_29440 SM00257 Lysin motif K08M3_29440 SM00646 K08M3_29440 K08M3_29600 SM00479 K08M3_29600 K08M3_29660 SM00450 Rhodanese Homology Domain K08M3_29690 SM00971 Serine acetyltransferase, N-terminal K08M3_29800 SM00841 Elongation factor P, C-terminal K08M3_29800 SM01185 K08M3_29800 K08M3_29850 SM00883 Chaperonin 10 Kd subunit K08M3_29900 SM00448 cheY-homologous receiver domain K08M3_29900 SM00862 Transcriptional regulatory protein, C terminal K08M3_29910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_29910 SM00387 Histidine kinase-like ATPases K08M3_29910 SM00388 His Kinase A (phosphoacceptor) domain K08M3_29980 SM00421 helix_turn_helix, Lux Regulon K08M3_29980 SM00448 cheY-homologous receiver domain K08M3_29990 SM01091 Transporter associated domain K08M3_30050 SM00387 Histidine kinase-like ATPases K08M3_30050 SM00388 His Kinase A (phosphoacceptor) domain K08M3_30050 SM00448 cheY-homologous receiver domain K08M3_30080 SM00479 K08M3_30080 K08M3_30120 SM00878 Biotin carboxylase C-terminal domain K08M3_30170 SM00382 ATPases associated with a variety of cellular activities K08M3_30290 SM00862 Transcriptional regulatory protein, C terminal K08M3_30300 SM00422 helix_turn_helix, mercury resistance K08M3_30310 SM00798 AICARFT/IMPCHase bienzyme K08M3_30310 SM00851 MGS-like domain K08M3_30320 SM01209 K08M3_30320 K08M3_30320 SM01210 K08M3_30320 K08M3_30340 SM00411 bacterial (prokaryotic) histone like domain K08M3_30350 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_30380 SM00986 Uracil DNA glycosylase superfamily K08M3_30380 SM00987 UreE urease accessory protein, C-terminal domain K08M3_30420 SM00663 RNA polymerase I subunit A N-terminus K08M3_30470 SM00649 Ribosomal protein L11/L12 K08M3_30480 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. K08M3_30480 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. K08M3_30590 SM00155 Phospholipase D. Active site motifs. K08M3_30730 SM00360 RNA recognition motif K08M3_30840 SM00563 Phosphate acyltransferases K08M3_30890 SM00450 Rhodanese Homology Domain K08M3_30920 SM00382 ATPases associated with a variety of cellular activities K08M3_30930 SM00382 ATPases associated with a variety of cellular activities K08M3_30930 SM00962 SRP54-type protein, GTPase domain K08M3_30930 SM00963 SRP54-type protein, helical bundle domain K08M3_31040 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M3_31050 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K08M3_31060 SM00052 Putative diguanylate phosphodiesterase K08M3_31120 SM01144 K08M3_31120 K08M3_31130 SM00052 Putative diguanylate phosphodiesterase K08M3_31130 SM00897 FIST N domain K08M3_31130 SM01204 K08M3_31130 K08M3_31190 SM01219 K08M3_31190 K08M3_31240 SM00028 Tetratricopeptide repeats K08M3_31360 SM00357 Cold shock protein domain K08M3_31360 SM00382 ATPases associated with a variety of cellular activities K08M3_31360 SM00959 Rho termination factor, N-terminal domain K08M3_31380 SM00487 DEAD-like helicases superfamily K08M3_31380 SM00490 helicase superfamily c-terminal domain K08M3_31430 SM00341 Helicase and RNase D C-terminal K08M3_31430 SM00487 DEAD-like helicases superfamily K08M3_31430 SM00490 helicase superfamily c-terminal domain K08M3_31430 SM00956 K08M3_31430 K08M3_31450 SM00342 helix_turn_helix, arabinose operon control protein K08M3_31570 SM00876 Biotin and Thiamin Synthesis associated domain K08M3_31790 SM01001 AIR carboxylase K08M3_31840 SM00257 Lysin motif K08M3_31980 SM00563 Phosphate acyltransferases K08M3_32000 SM00382 ATPases associated with a variety of cellular activities K08M3_32080 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_32130 SM00382 ATPases associated with a variety of cellular activities K08M3_32210 SM00470 ParB-like nuclease domain K08M3_32240 SM01228 K08M3_32240 K08M3_32300 SM00382 ATPases associated with a variety of cellular activities K08M3_32320 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_32320 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K08M3_32340 SM00470 ParB-like nuclease domain K08M3_32490 SM00382 ATPases associated with a variety of cellular activities K08M3_32500 SM00052 Putative diguanylate phosphodiesterase K08M3_32500 SM00267 diguanylate cyclase K08M3_32530 SM00448 cheY-homologous receiver domain K08M3_32540 SM00387 Histidine kinase-like ATPases K08M3_32560 SM00421 helix_turn_helix, Lux Regulon K08M3_32570 SM00342 helix_turn_helix, arabinose operon control protein K08M3_32620 SM00360 RNA recognition motif K08M3_32660 SM00344 helix_turn_helix ASNC type K08M3_32680 SM00382 ATPases associated with a variety of cellular activities K08M3_32700 SM00487 DEAD-like helicases superfamily K08M3_32700 SM00490 helicase superfamily c-terminal domain K08M3_32720 SM00342 helix_turn_helix, arabinose operon control protein K08M3_32730 SM00829 Enoylreductase K08M3_32890 SM00347 helix_turn_helix multiple antibiotic resistance protein K08M3_32920 SM00342 helix_turn_helix, arabinose operon control protein K08M3_32920 SM00871 Bacterial transcription activator, effector binding domain K08M3_32930 SM00342 helix_turn_helix, arabinose operon control protein K08M3_32980 SM00382 ATPases associated with a variety of cellular activities K08M3_33040 SM00448 cheY-homologous receiver domain K08M3_33040 SM00862 Transcriptional regulatory protein, C terminal K08M3_33050 SM00387 Histidine kinase-like ATPases K08M3_33170 SM00382 ATPases associated with a variety of cellular activities K08M3_33180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_33180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_33250 SM00857 Resolvase, N terminal domain K08M3_33260 SM00354 helix_turn _helix lactose operon repressor K08M3_33330 SM00354 helix_turn _helix lactose operon repressor K08M3_33440 SM00642 Alpha-amylase domain K08M3_33480 SM00642 Alpha-amylase domain K08M3_33500 SM00642 Alpha-amylase domain K08M3_33510 SM00671 Sel1-like repeats. K08M3_33550 SM00966 SpoVT / AbrB like domain K08M3_33630 SM00421 helix_turn_helix, Lux Regulon K08M3_33660 SM00642 Alpha-amylase domain K08M3_33680 SM00642 Alpha-amylase domain K08M3_33800 SM00226 Low molecular weight phosphatase family K08M3_33870 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. K08M3_33900 SM00450 Rhodanese Homology Domain K08M3_33920 SM00936 Penicillin-binding protein 5, C-terminal domain K08M3_33930 SM00642 Alpha-amylase domain K08M3_33940 SM00342 helix_turn_helix, arabinose operon control protein K08M3_34160 SM00448 cheY-homologous receiver domain K08M3_34160 SM00862 Transcriptional regulatory protein, C terminal K08M3_34170 SM00387 Histidine kinase-like ATPases K08M3_34170 SM00388 His Kinase A (phosphoacceptor) domain K08M3_34480 SM00382 ATPases associated with a variety of cellular activities K08M3_34530 SM00382 ATPases associated with a variety of cellular activities K08M3_34550 SM00020 Trypsin-like serine protease K08M3_34590 SM00481 DNA polymerase alpha chain like domain K08M3_34670 SM00448 cheY-homologous receiver domain K08M3_34670 SM00862 Transcriptional regulatory protein, C terminal K08M3_34680 SM00388 His Kinase A (phosphoacceptor) domain K08M3_34710 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_34720 SM00052 Putative diguanylate phosphodiesterase K08M3_34720 SM00267 diguanylate cyclase K08M3_34740 SM00829 Enoylreductase K08M3_34750 SM00972 Spore Coat Protein U domain K08M3_34760 SM00972 Spore Coat Protein U domain K08M3_34790 SM00972 Spore Coat Protein U domain K08M3_34800 SM01057 Eukaryotic-type carbonic anhydrase K08M3_34870 SM00382 ATPases associated with a variety of cellular activities K08M3_34900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_34900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_34940 SM00587 ZnF_C4 abd HLH domain containing kinases domain K08M3_35010 SM00382 ATPases associated with a variety of cellular activities K08M3_35050 SM00267 diguanylate cyclase K08M3_35060 SM00028 Tetratricopeptide repeats K08M3_35100 SM00422 helix_turn_helix, mercury resistance K08M3_35120 SM00257 Lysin motif K08M3_35140 SM00487 DEAD-like helicases superfamily K08M3_35140 SM00490 helicase superfamily c-terminal domain K08M3_35200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_35200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_35240 SM00382 ATPases associated with a variety of cellular activities K08M3_35250 SM00267 diguanylate cyclase K08M3_35270 SM00327 von Willebrand factor (vWF) type A domain K08M3_35280 SM00327 von Willebrand factor (vWF) type A domain K08M3_35320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_35320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_35340 SM00421 helix_turn_helix, Lux Regulon K08M3_35350 SM00421 helix_turn_helix, Lux Regulon K08M3_35370 SM00382 ATPases associated with a variety of cellular activities K08M3_35420 SM00382 ATPases associated with a variety of cellular activities K08M3_35440 SM00382 ATPases associated with a variety of cellular activities K08M3_35450 SM00387 Histidine kinase-like ATPases K08M3_35450 SM00388 His Kinase A (phosphoacceptor) domain K08M3_35460 SM00448 cheY-homologous receiver domain K08M3_35460 SM00862 Transcriptional regulatory protein, C terminal K08M3_35590 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K08M3_35590 SM00382 ATPases associated with a variety of cellular activities K08M3_35600 SM00849 Metallo-beta-lactamase superfamily K08M3_35640 SM01060 K08M3_35640 K08M3_35660 SM00829 Enoylreductase K08M3_35680 SM01022 K08M3_35680 K08M3_35800 SM00382 ATPases associated with a variety of cellular activities K08M3_35870 SM00342 helix_turn_helix, arabinose operon control protein K08M3_36020 SM00382 ATPases associated with a variety of cellular activities K08M3_36080 SM00729 Elongator protein 3, MiaB family, Radical SAM K08M3_36120 SM00260 Two component signalling adaptor domain K08M3_36120 SM00448 cheY-homologous receiver domain K08M3_36150 SM00382 ATPases associated with a variety of cellular activities K08M3_36160 SM00382 ATPases associated with a variety of cellular activities K08M3_36190 SM00420 helix_turn_helix, Deoxyribose operon repressor K08M3_36190 SM01134 K08M3_36190 K08M3_36220 SM01007 Class II Aldolase and Adducin N-terminal domain K08M3_36280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_36280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_36350 SM00422 helix_turn_helix, mercury resistance K08M3_36360 SM00642 Alpha-amylase domain K08M3_36370 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K08M3_36420 SM00382 ATPases associated with a variety of cellular activities K08M3_36510 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K08M3_36510 SM00267 diguanylate cyclase K08M3_36580 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K08M3_36610 SM00382 ATPases associated with a variety of cellular activities K08M3_36640 SM01119 K08M3_36640 K08M3_36750 SM00342 helix_turn_helix, arabinose operon control protein K08M3_36770 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K08M3_36880 SM00530 Helix-turn-helix XRE-family like proteins K08M3_36920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_36920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_36980 SM00052 Putative diguanylate phosphodiesterase K08M3_36980 SM00267 diguanylate cyclase K08M3_37100 SM00342 helix_turn_helix, arabinose operon control protein K08M3_37270 SM01322 K08M3_37270 K08M3_37280 SM00357 Cold shock protein domain K08M3_37300 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_37300 SM00267 diguanylate cyclase K08M3_37330 SM00382 ATPases associated with a variety of cellular activities K08M3_37340 SM00382 ATPases associated with a variety of cellular activities K08M3_37360 SM00448 cheY-homologous receiver domain K08M3_37410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_37410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_37630 SM00487 DEAD-like helicases superfamily K08M3_37630 SM00490 helicase superfamily c-terminal domain K08M3_37670 SM00357 Cold shock protein domain K08M3_37710 SM00833 Cobalamin synthesis protein cobW C-terminal domain K08M3_37720 SM00487 DEAD-like helicases superfamily K08M3_37720 SM00490 helicase superfamily c-terminal domain K08M3_37760 SM00052 Putative diguanylate phosphodiesterase K08M3_37770 SM00382 ATPases associated with a variety of cellular activities K08M3_37780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_37830 SM00342 helix_turn_helix, arabinose operon control protein K08M3_37840 SM00316 Ribosomal protein S1-like RNA-binding domain K08M3_37840 SM00357 Cold shock protein domain K08M3_37840 SM00955 K08M3_37840 K08M3_37850 SM00487 DEAD-like helicases superfamily K08M3_37850 SM00490 helicase superfamily c-terminal domain K08M3_37930 SM00342 helix_turn_helix, arabinose operon control protein K08M3_38010 SM00833 Cobalamin synthesis protein cobW C-terminal domain K08M3_38020 SM00833 Cobalamin synthesis protein cobW C-terminal domain K08M3_38060 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K08M3_38060 SM00091 PAS domain K08M3_38060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_38120 SM00422 helix_turn_helix, mercury resistance K08M3_38190 SM00822 K08M3_38190 K08M3_38360 SM00382 ATPases associated with a variety of cellular activities K08M3_38370 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_38370 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K08M3_38460 SM00893 Electron transfer flavoprotein domain K08M3_38480 SM00861 Transketolase, pyrimidine binding domain K08M3_38590 SM00448 cheY-homologous receiver domain K08M3_38590 SM00862 Transcriptional regulatory protein, C terminal K08M3_38600 SM00388 His Kinase A (phosphoacceptor) domain K08M3_38610 SM00871 Bacterial transcription activator, effector binding domain K08M3_38650 SM00028 Tetratricopeptide repeats K08M3_38650 SM00267 diguanylate cyclase K08M3_38690 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K08M3_38730 SM01012 K08M3_38730 K08M3_38760 SM00382 ATPases associated with a variety of cellular activities K08M3_38830 SM00331 Sigma factor PP2C-like phosphatases K08M3_38830 SM00448 cheY-homologous receiver domain K08M3_38870 SM00220 Serine/Threonine protein kinases, catalytic domain K08M3_38880 SM00240 Forkhead associated domain K08M3_38940 SM00331 Sigma factor PP2C-like phosphatases K08M3_38940 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain K08M3_39030 SM00382 ATPases associated with a variety of cellular activities K08M3_39030 SM01086 C-terminal, D2-small domain, of ClpB protein K08M3_39170 SM00382 ATPases associated with a variety of cellular activities K08M3_39250 SM01005 Alanine racemase, C-terminal domain K08M3_39260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_39260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_39270 SM01311 K08M3_39270 K08M3_39310 SM00493 K08M3_39310 K08M3_39310 SM00778 Zinc-binding domain of primase-helicase K08M3_39320 SM00482 DNA polymerase A domain K08M3_39810 SM00642 Alpha-amylase domain K08M3_39840 SM00880 K08M3_39840 K08M3_39880 SM00267 diguanylate cyclase K08M3_39900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K08M3_39900 SM00267 diguanylate cyclase K08M3_40130 SM00387 Histidine kinase-like ATPases K08M3_40140 SM00421 helix_turn_helix, Lux Regulon K08M3_40140 SM00448 cheY-homologous receiver domain K08M3_40230 SM00450 Rhodanese Homology Domain K08M3_40240 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor K08M3_40310 SM00342 helix_turn_helix, arabinose operon control protein K08M3_40390 SM00382 ATPases associated with a variety of cellular activities K08M3_40410 SM00267 diguanylate cyclase K08M3_40410 SM00448 cheY-homologous receiver domain K08M3_40420 SM00267 diguanylate cyclase K08M3_40450 SM01002 Alanine dehydrogenase/PNT, C-terminal domain K08M3_40450 SM01003 Alanine dehydrogenase/PNT, N-terminal domain K08M3_40470 SM00387 Histidine kinase-like ATPases K08M3_40470 SM00388 His Kinase A (phosphoacceptor) domain K08M3_40480 SM00448 cheY-homologous receiver domain K08M3_40480 SM00862 Transcriptional regulatory protein, C terminal K08M3_40580 SM00369 Leucine-rich repeats, typical (most populated) subfamily K08M3_40880 SM00881 CoA binding domain K08M3_40920 SM00091 PAS domain K08M3_40920 SM00267 diguanylate cyclase K08M3_40920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_40940 SM00796 Allophanate hydrolase subunit 1 K08M3_40950 SM00797 Allophanate hydrolase subunit 2 K08M3_40980 SM00382 ATPases associated with a variety of cellular activities K08M3_41010 SM00052 Putative diguanylate phosphodiesterase K08M3_41010 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. K08M3_41010 SM00267 diguanylate cyclase K08M3_41030 SM00271 DnaJ molecular chaperone homology domain K08M3_41160 SM00782 PhnA Zinc-Ribbon K08M3_41240 SM00116 Domain in cystathionine beta-synthase and other proteins. K08M3_41250 SM00867 YceI-like domain K08M3_41290 SM00052 Putative diguanylate phosphodiesterase K08M3_41300 SM00487 DEAD-like helicases superfamily K08M3_41300 SM00490 helicase superfamily c-terminal domain K08M3_41330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_41400 SM00495 Chitin-binding domain type 3 K08M3_41400 SM00636 K08M3_41400 K08M3_41410 SM00342 helix_turn_helix, arabinose operon control protein K08M3_41440 SM00382 ATPases associated with a variety of cellular activities K08M3_41460 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_41460 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. K08M3_41480 SM00052 Putative diguanylate phosphodiesterase K08M3_41510 SM00354 helix_turn _helix lactose operon repressor K08M3_41610 SM00530 Helix-turn-helix XRE-family like proteins K08M3_41660 SM00849 Metallo-beta-lactamase superfamily K08M3_41700 SM00342 helix_turn_helix, arabinose operon control protein K08M3_41750 SM00479 K08M3_41750 K08M3_41760 SM00382 ATPases associated with a variety of cellular activities K08M3_41820 SM00422 helix_turn_helix, mercury resistance K08M3_41890 SM00924 MgtE intracellular N domain K08M3_41970 SM00953 K08M3_41970 K08M3_42000 SM00704 CDGSH-type zinc finger. Function unknown. K08M3_42130 SM00260 Two component signalling adaptor domain K08M3_42130 SM00448 cheY-homologous receiver domain K08M3_42140 SM00421 helix_turn_helix, Lux Regulon K08M3_42140 SM00448 cheY-homologous receiver domain K08M3_42160 SM00267 diguanylate cyclase K08M3_42170 SM00421 helix_turn_helix, Lux Regulon K08M3_42170 SM00448 cheY-homologous receiver domain K08M3_42180 SM00052 Putative diguanylate phosphodiesterase K08M3_42180 SM00448 cheY-homologous receiver domain K08M3_42190 SM00062 Bacterial periplasmic substrate-binding proteins K08M3_42190 SM00387 Histidine kinase-like ATPases K08M3_42190 SM00388 His Kinase A (phosphoacceptor) domain K08M3_42190 SM00448 cheY-homologous receiver domain K08M3_42220 SM00387 Histidine kinase-like ATPases K08M3_42220 SM00448 cheY-homologous receiver domain K08M3_42290 SM00990 K08M3_42290 K08M3_42320 SM00046 Diacylglycerol kinase catalytic domain (presumed) K08M3_42360 SM00327 von Willebrand factor (vWF) type A domain K08M3_42370 SM00327 von Willebrand factor (vWF) type A domain K08M3_42450 SM00862 Transcriptional regulatory protein, C terminal K08M3_42480 SM00073 Histidine Phosphotransfer domain K08M3_42480 SM00387 Histidine kinase-like ATPases K08M3_42480 SM00388 His Kinase A (phosphoacceptor) domain K08M3_42480 SM00448 cheY-homologous receiver domain K08M3_42500 SM00851 MGS-like domain K08M3_42590 SM00342 helix_turn_helix, arabinose operon control protein K08M3_42600 SM00422 helix_turn_helix, mercury resistance K08M3_42610 SM00382 ATPases associated with a variety of cellular activities K08M3_42690 SM00354 helix_turn _helix lactose operon repressor K08M3_42730 SM00382 ATPases associated with a variety of cellular activities K08M3_42750 SM00052 Putative diguanylate phosphodiesterase K08M3_42750 SM00267 diguanylate cyclase K08M3_42850 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase K08M3_42870 SM00387 Histidine kinase-like ATPases K08M3_42870 SM00388 His Kinase A (phosphoacceptor) domain K08M3_42870 SM00448 cheY-homologous receiver domain K08M3_42900 SM00244 prohibitin homologues K08M3_42930 SM00382 ATPases associated with a variety of cellular activities K08M3_42990 SM00028 Tetratricopeptide repeats K08M3_42990 SM00267 diguanylate cyclase K08M3_43000 SM00822 K08M3_43000 K08M3_43070 SM00422 helix_turn_helix, mercury resistance K08M3_43110 SM00878 Biotin carboxylase C-terminal domain K08M3_43150 SM01266 K08M3_43150 K08M3_43160 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_43290 SM00382 ATPases associated with a variety of cellular activities K08M3_43340 SM00382 ATPases associated with a variety of cellular activities K08M3_43360 SM00893 Electron transfer flavoprotein domain K08M3_43370 SM00893 Electron transfer flavoprotein domain K08M3_43410 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_43410 SM00866 K08M3_43410 K08M3_43500 SM00822 K08M3_43500 K08M3_43510 SM00347 helix_turn_helix multiple antibiotic resistance protein K08M3_43520 SM00342 helix_turn_helix, arabinose operon control protein K08M3_43620 SM00240 Forkhead associated domain K08M3_43660 SM00344 helix_turn_helix ASNC type K08M3_43730 SM00220 Serine/Threonine protein kinases, catalytic domain K08M3_43800 SM00382 ATPases associated with a variety of cellular activities K08M3_43800 SM01086 C-terminal, D2-small domain, of ClpB protein K08M3_43810 SM00382 ATPases associated with a variety of cellular activities K08M3_43890 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_43900 SM00736 Dystroglycan-type cadherin-like domains. K08M3_43950 SM00028 Tetratricopeptide repeats K08M3_43950 SM00530 Helix-turn-helix XRE-family like proteins K08M3_44000 SM01240 K08M3_44000 K08M3_44030 SM00448 cheY-homologous receiver domain K08M3_44100 SM00852 Probable molybdopterin binding domain K08M3_44140 SM00450 Rhodanese Homology Domain K08M3_44170 SM00861 Transketolase, pyrimidine binding domain K08M3_44180 SM00091 PAS domain K08M3_44180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_44240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_44310 SM00421 helix_turn_helix, Lux Regulon K08M3_44310 SM00448 cheY-homologous receiver domain K08M3_44320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_44320 SM00387 Histidine kinase-like ATPases K08M3_44350 SM00926 Molybdopterin oxidoreductase Fe4S4 domain K08M3_44420 SM00822 K08M3_44420 K08M3_44510 SM00344 helix_turn_helix ASNC type K08M3_44560 SM00347 helix_turn_helix multiple antibiotic resistance protein K08M3_44570 SM00387 Histidine kinase-like ATPases K08M3_44570 SM00388 His Kinase A (phosphoacceptor) domain K08M3_44570 SM00448 cheY-homologous receiver domain K08M3_44590 SM00465 GIY-YIG type nucleases (URI domain) K08M3_44640 SM00387 Histidine kinase-like ATPases K08M3_44640 SM00388 His Kinase A (phosphoacceptor) domain K08M3_44640 SM00448 cheY-homologous receiver domain K08M3_44650 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M3_44710 SM00344 helix_turn_helix ASNC type K08M3_44730 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_44750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_44750 SM00387 Histidine kinase-like ATPases K08M3_44750 SM00388 His Kinase A (phosphoacceptor) domain K08M3_44760 SM00448 cheY-homologous receiver domain K08M3_44760 SM00862 Transcriptional regulatory protein, C terminal K08M3_44790 SM00342 helix_turn_helix, arabinose operon control protein K08M3_44830 SM00924 MgtE intracellular N domain K08M3_44860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. K08M3_44870 SM00530 Helix-turn-helix XRE-family like proteins K08M3_44880 SM00563 Phosphate acyltransferases K08M3_44970 SM00448 cheY-homologous receiver domain K08M3_44970 SM00862 Transcriptional regulatory protein, C terminal K08M3_44980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_44980 SM00387 Histidine kinase-like ATPases K08M3_44980 SM00388 His Kinase A (phosphoacceptor) domain K08M3_45070 SM00357 Cold shock protein domain K08M3_45130 SM00936 Penicillin-binding protein 5, C-terminal domain K08M3_45160 SM00640 Glycosyl hydrolases family 32 K08M3_45190 SM00354 helix_turn _helix lactose operon repressor K08M3_45220 SM00822 K08M3_45220 K08M3_45300 SM00342 helix_turn_helix, arabinose operon control protein K08M3_45300 SM00871 Bacterial transcription activator, effector binding domain K08M3_45350 SM00487 DEAD-like helicases superfamily K08M3_45350 SM00490 helicase superfamily c-terminal domain K08M3_45410 SM00829 Enoylreductase K08M3_45440 SM00342 helix_turn_helix, arabinose operon control protein K08M3_45450 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_45480 SM00344 helix_turn_helix ASNC type K08M3_45550 SM00788 Adenylosuccinate synthetase K08M3_45560 SM00870 K08M3_45560 K08M3_45600 SM00421 helix_turn_helix, Lux Regulon K08M3_45670 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_45670 SM00866 K08M3_45670 K08M3_45720 SM00382 ATPases associated with a variety of cellular activities K08M3_45820 SM00155 Phospholipase D. Active site motifs. K08M3_45840 SM01022 K08M3_45840 K08M3_45850 SM00028 Tetratricopeptide repeats K08M3_45870 SM00422 helix_turn_helix, mercury resistance K08M3_45910 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain K08M3_45920 SM00838 Elongation factor G C-terminus K08M3_45920 SM00889 Elongation factor G, domain IV K08M3_45990 SM00382 ATPases associated with a variety of cellular activities K08M3_46140 SM00420 helix_turn_helix, Deoxyribose operon repressor K08M3_46140 SM01134 K08M3_46140 K08M3_46200 SM00342 helix_turn_helix, arabinose operon control protein K08M3_46280 SM00883 Chaperonin 10 Kd subunit K08M3_46290 SM00450 Rhodanese Homology Domain K08M3_46320 SM01240 K08M3_46320 K08M3_46470 SM00342 helix_turn_helix, arabinose operon control protein K08M3_46550 SM00883 Chaperonin 10 Kd subunit K08M3_46560 SM00450 Rhodanese Homology Domain K08M3_46590 SM01240 K08M3_46590 K08M3_46740 SM00858 K08M3_46740 K08M3_46870 SM00631 K08M3_46870 K08M3_46930 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_46930 SM00866 K08M3_46930 K08M3_46950 SM00382 ATPases associated with a variety of cellular activities K08M3_47010 SM00354 helix_turn _helix lactose operon repressor K08M3_47110 SM00382 ATPases associated with a variety of cellular activities K08M3_47140 SM01057 Eukaryotic-type carbonic anhydrase K08M3_47250 SM01266 K08M3_47250 K08M3_47310 SM00267 diguanylate cyclase K08M3_47330 SM00530 Helix-turn-helix XRE-family like proteins K08M3_47340 SM00267 diguanylate cyclase K08M3_47340 SM01079 K08M3_47340 K08M3_47530 SM00267 diguanylate cyclase K08M3_47540 SM00382 ATPases associated with a variety of cellular activities K08M3_47540 SM00448 cheY-homologous receiver domain K08M3_47550 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) K08M3_47550 SM00387 Histidine kinase-like ATPases K08M3_47650 SM00849 Metallo-beta-lactamase superfamily K08M3_47730 SM00382 ATPases associated with a variety of cellular activities K08M3_47870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_47870 SM00387 Histidine kinase-like ATPases K08M3_47870 SM00388 His Kinase A (phosphoacceptor) domain K08M3_47880 SM00448 cheY-homologous receiver domain K08M3_47880 SM00862 Transcriptional regulatory protein, C terminal K08M3_48070 SM00382 ATPases associated with a variety of cellular activities K08M3_48130 SM00014 Acid phosphatase homologues K08M3_48170 SM00822 K08M3_48170 K08M3_48240 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_48450 SM00495 Chitin-binding domain type 3 K08M3_48460 SM00344 helix_turn_helix ASNC type K08M3_48510 SM00829 Enoylreductase K08M3_48560 SM00267 diguanylate cyclase K08M3_48600 SM00849 Metallo-beta-lactamase superfamily K08M3_48640 SM00267 diguanylate cyclase K08M3_48680 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins K08M3_48680 SM00495 Chitin-binding domain type 3 K08M3_48680 SM00636 K08M3_48680 K08M3_48780 SM00342 helix_turn_helix, arabinose operon control protein K08M3_48780 SM01009 AlkA N-terminal domain K08M3_48880 SM00345 helix_turn_helix gluconate operon transcriptional repressor K08M3_48890 SM00382 ATPases associated with a variety of cellular activities K08M3_48940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). K08M3_48940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain K08M3_48940 SM01049 K08M3_48940 K08M3_48970 SM00448 cheY-homologous receiver domain K08M3_48970 SM00850 LytTr DNA-binding domain K08M3_48980 SM00387 Histidine kinase-like ATPases K08M3_49020 SM00382 ATPases associated with a variety of cellular activities K08M3_49070 SM00387 Histidine kinase-like ATPases K08M3_49070 SM00388 His Kinase A (phosphoacceptor) domain K08M3_49070 SM00448 cheY-homologous receiver domain K08M3_49110 SM00382 ATPases associated with a variety of cellular activities K08M3_49120 SM00382 ATPases associated with a variety of cellular activities K08M3_50070 SM00400 zinc finger K08M3_50300 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain K08M3_50300 SM00437 Bacterial DNA topoisomerase I DNA-binding domain K08M3_50300 SM00493 K08M3_50300 K08M3_50510 SM00382 ATPases associated with a variety of cellular activities K08M3_50800 SM00528 Domain in histone-like proteins of HNS family K08M3_50830 SM00477 DNA/RNA non-specific endonuclease K08M3_50830 SM00892 DNA/RNA non-specific endonuclease K08M3_50880 SM00052 Putative diguanylate phosphodiesterase K08M3_50880 SM00267 diguanylate cyclase K08M3_51230 SM00974 K08M3_51230 K08M3_51350 SM00244 prohibitin homologues K08M3_51360 SM00244 prohibitin homologues K08M3_51470 SM00052 Putative diguanylate phosphodiesterase K08M3_51470 SM00267 diguanylate cyclase K08M3_51800 SM00052 Putative diguanylate phosphodiesterase K08M3_51810 SM00267 diguanylate cyclase K08M3_52030 SM00493 K08M3_52030 K08M3_52120 SM00479 K08M3_52120