locus-tag class description K08M4_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain K08M4_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain K08M4_00020 PF02767 DNA polymerase III beta subunit, central domain K08M4_00040 PF00204 DNA gyrase B K08M4_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_00040 PF00986 DNA gyrase B subunit, carboxyl terminus K08M4_00040 PF18053 DNA gyrase B subunit insert domain K08M4_00040 PF01751 Toprim domain K08M4_00050 PF00011 Hsp20/alpha crystallin family K08M4_00060 PF00155 Aminotransferase class I and II K08M4_00090 PF01169 Uncharacterized protein family UPF0016 K08M4_00130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_00130 PF03466 LysR substrate binding domain K08M4_00140 PF08240 Alcohol dehydrogenase GroES-like domain K08M4_00140 PF00107 Zinc-binding dehydrogenase K08M4_00150 PF02803 Thiolase, C-terminal domain K08M4_00150 PF00108 Thiolase, N-terminal domain K08M4_00170 PF01205 Uncharacterized protein family UPF0029 K08M4_00170 PF09186 Domain of unknown function (DUF1949) K08M4_00180 PF02386 Cation transport protein K08M4_00190 PF12724 Flavodoxin domain K08M4_00280 PF13358 DDE superfamily endonuclease K08M4_00300 PF07732 Multicopper oxidase K08M4_00300 PF00394 Multicopper oxidase K08M4_00300 PF07731 Multicopper oxidase K08M4_00310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) K08M4_00340 PF02581 Thiamine monophosphate synthase K08M4_00350 PF00899 ThiF family K08M4_00360 PF02597 ThiS family K08M4_00380 PF04055 Radical SAM superfamily K08M4_00380 PF06968 Biotin and Thiamin Synthesis associated domain K08M4_00390 PF00557 Metallopeptidase family M24 K08M4_00390 PF01321 Creatinase/Prolidase N-terminal domain K08M4_00390 PF00557 Metallopeptidase family M24 K08M4_00390 PF01321 Creatinase/Prolidase N-terminal domain K08M4_00400 PF03466 LysR substrate binding domain K08M4_00400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_00410 PF07690 Major Facilitator Superfamily K08M4_00450 PF05114 Protein of unknown function (DUF692) K08M4_00470 PF13361 UvrD-like helicase C-terminal domain K08M4_00470 PF00580 UvrD/REP helicase N-terminal domain K08M4_00480 PF08534 Redoxin K08M4_00500 PF01810 LysE type translocator K08M4_00510 PF12833 Helix-turn-helix domain K08M4_00510 PF02311 AraC-like ligand binding domain K08M4_00520 PF00892 EamA-like transporter family K08M4_00530 PF00271 Helicase conserved C-terminal domain K08M4_00530 PF09382 RQC domain K08M4_00530 PF16124 RecQ zinc-binding K08M4_00530 PF00570 HRDC domain K08M4_00530 PF00270 DEAD/DEAH box helicase K08M4_00550 PF02592 Putative vitamin uptake transporter K08M4_00580 PF00085 Thioredoxin K08M4_00590 PF07498 Rho termination factor, N-terminal domain K08M4_00590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M4_00590 PF07497 Rho termination factor, RNA-binding domain K08M4_00610 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K08M4_00620 PF00175 Oxidoreductase NAD-binding domain K08M4_00620 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M4_00630 PF00175 Oxidoreductase NAD-binding domain K08M4_00730 PF13358 DDE superfamily endonuclease K08M4_00750 PF13358 DDE superfamily endonuclease K08M4_00770 PF07219 HemY protein N-terminus K08M4_00780 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase K08M4_00790 PF02602 Uroporphyrinogen-III synthase HemD K08M4_00810 PF12633 Adenylate cyclase NT domain K08M4_00810 PF01295 Adenylate cyclase, class-I K08M4_00830 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K08M4_00830 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K08M4_00870 PF13419 Haloacid dehalogenase-like hydrolase K08M4_00880 PF08495 FIST N domain K08M4_00880 PF10442 FIST C domain K08M4_00880 PF00563 EAL domain K08M4_00880 PF00990 Diguanylate cyclase, GGDEF domain K08M4_00890 PF00563 EAL domain K08M4_00890 PF08495 FIST N domain K08M4_00890 PF10442 FIST C domain K08M4_00890 PF00990 Diguanylate cyclase, GGDEF domain K08M4_00940 PF12146 Serine aminopeptidase, S33 K08M4_00950 PF01810 LysE type translocator K08M4_00960 PF08668 HDOD domain K08M4_00960 PF00563 EAL domain K08M4_00970 PF01022 Bacterial regulatory protein, arsR family K08M4_00980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K08M4_00980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M4_01060 PF01914 MarC family integral membrane protein K08M4_01090 PF02881 SRP54-type protein, helical bundle domain K08M4_01090 PF00448 SRP54-type protein, GTPase domain K08M4_01100 PF00005 ABC transporter K08M4_01110 PF18075 FtsX extracellular domain K08M4_01120 PF04542 Sigma-70 region 2 K08M4_01120 PF04545 Sigma-70, region 4 K08M4_01120 PF00140 Sigma-70 factor, region 1.2 K08M4_01140 PF01694 Rhomboid family K08M4_01140 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease K08M4_01150 PF03748 Flagellar basal body-associated protein FliL K08M4_01160 PF04345 Chorismate lyase K08M4_01190 PF01219 Prokaryotic diacylglycerol kinase K08M4_01210 PF04072 Leucine carboxyl methyltransferase K08M4_01220 PF01554 MatE K08M4_01240 PF00440 Bacterial regulatory proteins, tetR family K08M4_01270 PF07715 TonB-dependent Receptor Plug Domain K08M4_01270 PF00593 TonB dependent receptor K08M4_01290 PF01177 Asp/Glu/Hydantoin racemase K08M4_01420 PF13358 DDE superfamily endonuclease K08M4_01440 PF13358 DDE superfamily endonuclease K08M4_01450 PF13091 PLD-like domain K08M4_01470 PF01565 FAD binding domain K08M4_01470 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain K08M4_01480 PF08279 HTH domain K08M4_01480 PF02237 Biotin protein ligase C terminal domain K08M4_01480 PF03099 Biotin/lipoate A/B protein ligase family K08M4_01490 PF00485 Phosphoribulokinase / Uridine kinase family K08M4_01540 PF03144 Elongation factor Tu domain 2 K08M4_01540 PF03143 Elongation factor Tu C-terminal domain K08M4_01540 PF00009 Elongation factor Tu GTP binding domain K08M4_01550 PF00584 SecE/Sec61-gamma subunits of protein translocation complex K08M4_01560 PF02357 Transcription termination factor nusG K08M4_01560 PF00467 KOW motif K08M4_01570 PF03946 Ribosomal protein L11, N-terminal domain K08M4_01570 PF00298 Ribosomal protein L11, RNA binding domain K08M4_01590 PF00466 Ribosomal protein L10 K08M4_01610 PF00562 RNA polymerase Rpb2, domain 6 K08M4_01610 PF04560 RNA polymerase Rpb2, domain 7 K08M4_01610 PF04561 RNA polymerase Rpb2, domain 2 K08M4_01610 PF04563 RNA polymerase beta subunit K08M4_01610 PF10385 RNA polymerase beta subunit external 1 domain K08M4_01610 PF04565 RNA polymerase Rpb2, domain 3 K08M4_01620 PF05000 RNA polymerase Rpb1, domain 4 K08M4_01620 PF04983 RNA polymerase Rpb1, domain 3 K08M4_01620 PF04998 RNA polymerase Rpb1, domain 5 K08M4_01620 PF00623 RNA polymerase Rpb1, domain 2 K08M4_01620 PF04997 RNA polymerase Rpb1, domain 1 K08M4_01630 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ K08M4_01650 PF01208 Uroporphyrinogen decarboxylase (URO-D) K08M4_01660 PF03167 Uracil DNA glycosylase superfamily K08M4_01680 PF04222 Protein of unknown function (DUF416) K08M4_01690 PF00571 CBS domain K08M4_01690 PF01595 Cyclin M transmembrane N-terminal domain K08M4_01700 PF00216 Bacterial DNA-binding protein K08M4_01720 PF02844 Phosphoribosylglycinamide synthetase, N domain K08M4_01720 PF02843 Phosphoribosylglycinamide synthetase, C domain K08M4_01720 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain K08M4_01740 PF13411 MerR HTH family regulatory protein K08M4_01750 PF17158 Membrane-associated sensor, integral membrane domain K08M4_01750 PF00990 Diguanylate cyclase, GGDEF domain K08M4_01770 PF01207 Dihydrouridine synthase (Dus) K08M4_01790 PF02785 Biotin carboxylase C-terminal domain K08M4_01790 PF00289 Biotin carboxylase, N-terminal domain K08M4_01790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K08M4_01800 PF00364 Biotin-requiring enzyme K08M4_01810 PF01220 Dehydroquinase class II K08M4_01820 PF13193 AMP-binding enzyme C-terminal domain K08M4_01820 PF16177 Acetyl-coenzyme A synthetase N-terminus K08M4_01820 PF00501 AMP-binding enzyme K08M4_01850 PF12832 MFS_1 like family K08M4_01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_01860 PF00512 His Kinase A (phospho-acceptor) domain K08M4_01860 PF01627 Hpt domain K08M4_01860 PF00672 HAMP domain K08M4_01860 PF00072 Response regulator receiver domain K08M4_01870 PF10415 Fumarase C C-terminus K08M4_01870 PF00206 Lyase K08M4_01890 PF00474 Sodium:solute symporter family K08M4_01910 PF03471 Transporter associated domain K08M4_01910 PF02080 TrkA-C domain K08M4_01910 PF00999 Sodium/hydrogen exchanger family K08M4_01920 PF00072 Response regulator receiver domain K08M4_01920 PF00196 Bacterial regulatory proteins, luxR family K08M4_01930 PF11412 Disulphide bond corrector protein DsbC K08M4_01930 PF02683 Cytochrome C biogenesis protein transmembrane region K08M4_01940 PF02863 Arginine repressor, C-terminal domain K08M4_01940 PF01316 Arginine repressor, DNA binding domain K08M4_01950 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain K08M4_01950 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain K08M4_01960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K08M4_01960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K08M4_01970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K08M4_01970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K08M4_01980 PF00696 Amino acid kinase family K08M4_02000 PF03606 C4-dicarboxylate anaerobic carrier K08M4_02010 PF03605 Anaerobic c4-dicarboxylate membrane transporter K08M4_02020 PF00206 Lyase K08M4_02020 PF10415 Fumarase C C-terminus K08M4_02030 PF04186 FxsA cytoplasmic membrane protein K08M4_02040 PF00588 SpoU rRNA Methylase family K08M4_02050 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K08M4_02050 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K08M4_02060 PF16527 Two-component sensor protein CpxA, periplasmic domain K08M4_02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_02060 PF00672 HAMP domain K08M4_02060 PF00512 His Kinase A (phospho-acceptor) domain K08M4_02070 PF00072 Response regulator receiver domain K08M4_02070 PF00486 Transcriptional regulatory protein, C terminal K08M4_02090 PF01545 Cation efflux family K08M4_02090 PF16916 Dimerisation domain of Zinc Transporter K08M4_02100 PF00365 Phosphofructokinase K08M4_02110 PF00121 Triosephosphate isomerase K08M4_02130 PF05656 Protein of unknown function (DUF805) K08M4_02160 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded K08M4_02180 PF03737 Aldolase/RraA K08M4_02190 PF01040 UbiA prenyltransferase family K08M4_02230 PF00356 Bacterial regulatory proteins, lacI family K08M4_02240 PF00271 Helicase conserved C-terminal domain K08M4_02240 PF18319 PriA DNA helicase Cys-rich region (CRR) domain K08M4_02240 PF18074 Primosomal protein N C-terminal domain K08M4_02240 PF17764 3′ DNA-binding domain (3′BD) K08M4_02240 PF00270 DEAD/DEAH box helicase K08M4_02260 PF00390 Malic enzyme, N-terminal domain K08M4_02260 PF03949 Malic enzyme, NAD binding domain K08M4_02280 PF01053 Cys/Met metabolism PLP-dependent enzyme K08M4_02290 PF03447 Homoserine dehydrogenase, NAD binding domain K08M4_02290 PF00742 Homoserine dehydrogenase K08M4_02290 PF00696 Amino acid kinase family K08M4_02300 PF02219 Methylenetetrahydrofolate reductase K08M4_02340 PF02774 Semialdehyde dehydrogenase, dimerisation domain K08M4_02340 PF01118 Semialdehyde dehydrogenase, NAD binding domain K08M4_02350 PF00696 Amino acid kinase family K08M4_02360 PF00764 Arginosuccinate synthase K08M4_02370 PF00583 Acetyltransferase (GNAT) family K08M4_02370 PF00206 Lyase K08M4_02370 PF14698 Argininosuccinate lyase C-terminal K08M4_02380 PF01042 Endoribonuclease L-PSP K08M4_02390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M4_02390 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_02400 PF00462 Glutaredoxin K08M4_02400 PF08534 Redoxin K08M4_02410 PF03466 LysR substrate binding domain K08M4_02410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_02420 PF00905 Penicillin binding protein transpeptidase domain K08M4_02420 PF00912 Transglycosylase K08M4_02420 PF17092 Penicillin-binding protein OB-like domain K08M4_02470 PF07660 Secretin and TonB N terminus short domain K08M4_02470 PF03958 Bacterial type II/III secretion system short domain K08M4_02470 PF00263 Bacterial type II and III secretion system protein K08M4_02470 PF11741 AMIN domain K08M4_02480 PF01202 Shikimate kinase K08M4_02510 PF02086 D12 class N6 adenine-specific DNA methyltransferase K08M4_02520 PF00834 Ribulose-phosphate 3 epimerase family K08M4_02530 PF13419 Haloacid dehalogenase-like hydrolase K08M4_02540 PF00579 tRNA synthetases class I (W and Y) K08M4_02560 PF00563 EAL domain K08M4_02560 PF03707 Bacterial signalling protein N terminal repeat K08M4_02560 PF00990 Diguanylate cyclase, GGDEF domain K08M4_02570 PF00117 Glutamine amidotransferase class-I K08M4_02580 PF00202 Aminotransferase class-III K08M4_02590 PF04958 Arginine N-succinyltransferase beta subunit K08M4_02620 PF13545 Crp-like helix-turn-helix domain K08M4_02620 PF00027 Cyclic nucleotide-binding domain K08M4_02630 PF00485 Phosphoribulokinase / Uridine kinase family K08M4_02650 PF00561 alpha/beta hydrolase fold K08M4_02670 PF12848 ABC transporter K08M4_02670 PF00005 ABC transporter K08M4_02680 PF02525 Flavodoxin-like fold K08M4_02690 PF00999 Sodium/hydrogen exchanger family K08M4_02690 PF02254 TrkA-N domain K08M4_02710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M4_02720 PF01112 Asparaginase K08M4_02750 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K08M4_02750 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M4_02760 PF13309 HTH domain K08M4_02760 PF08348 YheO-like PAS domain K08M4_02770 PF02635 DsrE/DsrF-like family K08M4_02780 PF02635 DsrE/DsrF-like family K08M4_02820 PF00009 Elongation factor Tu GTP binding domain K08M4_02820 PF14492 Elongation Factor G, domain II K08M4_02820 PF00679 Elongation factor G C-terminus K08M4_02820 PF03764 Elongation factor G, domain IV K08M4_02820 PF03144 Elongation factor Tu domain 2 K08M4_02830 PF00009 Elongation factor Tu GTP binding domain K08M4_02830 PF03144 Elongation factor Tu domain 2 K08M4_02830 PF03143 Elongation factor Tu C-terminal domain K08M4_02840 PF00338 Ribosomal protein S10p/S20e K08M4_02900 PF00237 Ribosomal protein L22p/L17e K08M4_02920 PF00252 Ribosomal protein L16p/L10e K08M4_02930 PF00831 Ribosomal L29 protein K08M4_02950 PF00238 Ribosomal protein L14p/L23e K08M4_02980 PF00253 Ribosomal protein S14p/S29e K08M4_03030 PF00327 Ribosomal protein L30p/L7e K08M4_03050 PF00344 SecY translocase K08M4_03060 PF00444 Ribosomal protein L36 K08M4_03070 PF00416 Ribosomal protein S13/S18 K08M4_03130 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K08M4_03130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M4_03140 PF04225 Opacity-associated protein A LysM-like domain K08M4_03140 PF08525 Opacity-associated protein A N-terminal motif K08M4_03160 PF13673 Acetyltransferase (GNAT) domain K08M4_03240 PF02872 5'-nucleotidase, C-terminal domain K08M4_03240 PF00149 Calcineurin-like phosphoesterase K08M4_03270 PF03600 Citrate transporter K08M4_03270 PF02080 TrkA-C domain K08M4_03330 PF00005 ABC transporter K08M4_03360 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) K08M4_03370 PF06526 Protein of unknown function (DUF1107) K08M4_03380 PF01625 Peptide methionine sulfoxide reductase K08M4_03390 PF17243 POTRA domain TamA domain 1 K08M4_03390 PF07244 Surface antigen variable number repeat K08M4_03390 PF01103 Surface antigen K08M4_03400 PF04357 TamB, inner membrane protein subunit of TAM complex K08M4_03410 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like K08M4_03430 PF08245 Mur ligase middle domain K08M4_03430 PF01225 Mur ligase family, catalytic domain K08M4_03430 PF02875 Mur ligase family, glutamate ligase domain K08M4_03440 PF02441 Flavoprotein K08M4_03460 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_03470 PF00005 ABC transporter K08M4_03490 PF01523 Putative modulator of DNA gyrase K08M4_03500 PF00571 CBS domain K08M4_03500 PF03448 MgtE intracellular N domain K08M4_03500 PF01769 Divalent cation transporter K08M4_03510 PF00381 PTS HPr component phosphorylation site K08M4_03530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M4_03540 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K08M4_03550 PF04552 Sigma-54, DNA binding domain K08M4_03550 PF00309 Sigma-54 factor, Activator interacting domain (AID) K08M4_03550 PF04963 Sigma-54 factor, core binding domain K08M4_03560 PF12399 Branched-chain amino acid ATP-binding cassette transporter K08M4_03560 PF00005 ABC transporter K08M4_03570 PF03968 OstA-like protein K08M4_03600 PF00571 CBS domain K08M4_03600 PF01380 SIS domain K08M4_03610 PF01699 Sodium/calcium exchanger protein K08M4_03620 PF00005 ABC transporter K08M4_03630 PF02405 Permease MlaE K08M4_03640 PF02470 MlaD protein K08M4_03650 PF05494 MlaC protein K08M4_03670 PF01722 BolA-like protein K08M4_03690 PF01553 Acyltransferase K08M4_03700 PF01042 Endoribonuclease L-PSP K08M4_03710 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain K08M4_03710 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain K08M4_03720 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K08M4_03720 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K08M4_03740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain K08M4_03740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain K08M4_03760 PF06877 Regulator of ribonuclease activity B K08M4_03780 PF00583 Acetyltransferase (GNAT) family K08M4_03790 PF00133 tRNA synthetases class I (I, L, M and V) K08M4_03790 PF08264 Anticodon-binding domain of tRNA K08M4_03790 PF10458 Valyl tRNA synthetase tRNA binding arm K08M4_03800 PF04364 DNA polymerase III chi subunit, HolC K08M4_03810 PF02789 Cytosol aminopeptidase family, N-terminal domain K08M4_03810 PF00883 Cytosol aminopeptidase family, catalytic domain K08M4_03820 PF03739 Lipopolysaccharide export system permease LptF/LptG K08M4_03830 PF03739 Lipopolysaccharide export system permease LptF/LptG K08M4_03870 PF00072 Response regulator receiver domain K08M4_04060 PF17200 Single Cache domain 2 K08M4_04060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_04060 PF00672 HAMP domain K08M4_04140 PF01464 Transglycosylase SLT domain K08M4_04140 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain K08M4_04160 PF00730 HhH-GPD superfamily base excision DNA repair protein K08M4_04160 PF00633 Helix-hairpin-helix motif K08M4_04160 PF14815 NUDIX domain K08M4_04170 PF02390 Putative methyltransferase K08M4_04190 PF06969 HemN C-terminal domain K08M4_04190 PF04055 Radical SAM superfamily K08M4_04200 PF01725 Ham1 family K08M4_04220 PF02594 Uncharacterised ACR, YggU family COG1872 K08M4_04230 PF02325 YGGT family K08M4_04240 PF03807 NADP oxidoreductase coenzyme F420-dependent K08M4_04240 PF14748 Pyrroline-5-carboxylate reductase dimerisation K08M4_04250 PF01168 Alanine racemase, N-terminal domain K08M4_04260 PF00437 Type II/IV secretion system protein K08M4_04270 PF00437 Type II/IV secretion system protein K08M4_04290 PF03652 Holliday junction resolvase K08M4_04310 PF02951 Prokaryotic glutathione synthetase, N-terminal domain K08M4_04310 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain K08M4_04320 PF04452 RNA methyltransferase K08M4_04340 PF04231 Endonuclease I K08M4_04370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K08M4_04370 PF07685 CobB/CobQ-like glutamine amidotransferase domain K08M4_04380 PF00155 Aminotransferase class I and II K08M4_04390 PF03186 CobD/Cbib protein K08M4_04400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M4_04410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M4_04410 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M4_04420 PF06180 Cobalt chelatase (CbiK) K08M4_04430 PF11760 Cobalamin synthesis G N-terminal K08M4_04430 PF11761 Cobalamin biosynthesis central region K08M4_04430 PF01890 Cobalamin synthesis G C-terminus K08M4_04440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M4_04450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M4_04460 PF02570 Precorrin-8X methylmutase K08M4_04470 PF01888 CbiD K08M4_04480 PF00300 Histidine phosphatase superfamily (branch 1) K08M4_04490 PF01032 FecCD transport family K08M4_04510 PF00005 ABC transporter K08M4_04530 PF00456 Transketolase, thiamine diphosphate binding domain K08M4_04530 PF02779 Transketolase, pyrimidine binding domain K08M4_04530 PF02780 Transketolase, C-terminal domain K08M4_04550 PF00486 Transcriptional regulatory protein, C terminal K08M4_04550 PF00072 Response regulator receiver domain K08M4_04560 PF00512 His Kinase A (phospho-acceptor) domain K08M4_04560 PF00072 Response regulator receiver domain K08M4_04560 PF01627 Hpt domain K08M4_04560 PF18415 Histidine kinase receptor ArcB trans-membrane domain K08M4_04560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_04560 PF00989 PAS fold K08M4_04590 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K08M4_04590 PF00367 phosphotransferase system, EIIB K08M4_04590 PF02378 Phosphotransferase system, EIIC K08M4_04600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K08M4_04600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M4_04610 PF00162 Phosphoglycerate kinase K08M4_04620 PF01116 Fructose-bisphosphate aldolase class-II K08M4_04630 PF00924 Mechanosensitive ion channel K08M4_04630 PF05552 Conserved TM helix K08M4_04640 PF01810 LysE type translocator K08M4_04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_04650 PF03466 LysR substrate binding domain K08M4_04670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K08M4_04670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M4_04670 PF01842 ACT domain K08M4_04690 PF01812 5-formyltetrahydrofolate cyclo-ligase family K08M4_04700 PF05164 Cell division protein ZapA K08M4_04720 PF01494 FAD binding domain K08M4_04730 PF01494 FAD binding domain K08M4_04770 PF03937 Flavinator of succinate dehydrogenase K08M4_04780 PF00890 FAD binding domain K08M4_04780 PF02910 Fumarate reductase flavoprotein C-term K08M4_04790 PF08281 Sigma-70, region 4 K08M4_04790 PF04542 Sigma-70 region 2 K08M4_04800 PF03872 Anti sigma-E protein RseA, N-terminal domain K08M4_04800 PF03873 Anti sigma-E protein RseA, C-terminal domain K08M4_04810 PF03888 MucB/RseB N-terminal domain K08M4_04810 PF17188 MucB/RseB C-terminal domain K08M4_04840 PF10502 Signal peptidase, peptidase S26 K08M4_04860 PF07650 KH domain K08M4_04860 PF01926 50S ribosome-binding GTPase K08M4_04880 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ K08M4_04900 PF00672 HAMP domain K08M4_04900 PF00072 Response regulator receiver domain K08M4_04900 PF00512 His Kinase A (phospho-acceptor) domain K08M4_04900 PF01627 Hpt domain K08M4_04900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K08M4_04900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_04920 PF02824 TGS domain K08M4_04920 PF04607 Region found in RelA / SpoT proteins K08M4_04920 PF13291 ACT domain K08M4_04930 PF03819 MazG nucleotide pyrophosphohydrolase domain K08M4_04950 PF03952 Enolase, N-terminal domain K08M4_04950 PF00113 Enolase, C-terminal TIM barrel domain K08M4_04980 PF02542 YgbB family K08M4_04990 PF01142 tRNA pseudouridine synthase D (TruD) K08M4_05000 PF01975 Survival protein SurE K08M4_05020 PF01476 LysM domain K08M4_05020 PF01551 Peptidase family M23 K08M4_05030 PF00140 Sigma-70 factor, region 1.2 K08M4_05030 PF04542 Sigma-70 region 2 K08M4_05030 PF04539 Sigma-70 region 3 K08M4_05030 PF04545 Sigma-70, region 4 K08M4_05050 PF02464 Competence-damaged protein K08M4_05060 PF00154 recA bacterial DNA recombination protein K08M4_05090 PF00128 Alpha amylase, catalytic domain K08M4_05090 PF02903 Alpha amylase, N-terminal ig-like domain K08M4_05090 PF16657 Maltogenic Amylase, C-terminal domain K08M4_05100 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_05110 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_05120 PF13416 Bacterial extracellular solute-binding protein K08M4_05140 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_05140 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K08M4_05160 PF00005 ABC transporter K08M4_05160 PF17912 MalK OB fold domain K08M4_05170 PF00686 Starch binding domain K08M4_05170 PF00128 Alpha amylase, catalytic domain K08M4_05190 PF01411 tRNA synthetases class II (A) K08M4_05190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K08M4_05190 PF02272 DHHA1 domain K08M4_05210 PF01842 ACT domain K08M4_05210 PF00696 Amino acid kinase family K08M4_05210 PF13840 ACT domain K08M4_05330 PF04277 Oxaloacetate decarboxylase, gamma chain K08M4_05340 PF00364 Biotin-requiring enzyme K08M4_05340 PF02436 Conserved carboxylase domain K08M4_05340 PF00682 HMGL-like K08M4_05350 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit K08M4_05360 PF08240 Alcohol dehydrogenase GroES-like domain K08M4_05360 PF00107 Zinc-binding dehydrogenase K08M4_05370 PF09335 SNARE associated Golgi protein K08M4_05380 PF05193 Peptidase M16 inactive domain K08M4_05380 PF00675 Insulinase (Peptidase family M16) K08M4_05390 PF04262 Glutamate-cysteine ligase K08M4_05420 PF03471 Transporter associated domain K08M4_05420 PF00571 CBS domain K08M4_05420 PF01595 Cyclin M transmembrane N-terminal domain K08M4_05430 PF01578 Cytochrome C assembly protein K08M4_05440 PF02881 SRP54-type protein, helical bundle domain K08M4_05440 PF02978 Signal peptide binding domain K08M4_05440 PF00448 SRP54-type protein, GTPase domain K08M4_05490 PF03884 DNA gyrase inhibitor YacG K08M4_05510 PF01121 Dephospho-CoA kinase K08M4_05520 PF01478 Type IV leader peptidase family K08M4_05520 PF06750 Bacterial Peptidase A24 N-terminal domain K08M4_05530 PF00482 Type II secretion system (T2SS), protein F K08M4_05540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K08M4_05540 PF00437 Type II/IV secretion system protein K08M4_05560 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain K08M4_05560 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain K08M4_05570 PF01510 N-acetylmuramoyl-L-alanine amidase K08M4_05580 PF07729 FCD domain K08M4_05580 PF00392 Bacterial regulatory proteins, gntR family K08M4_05590 PF00456 Transketolase, thiamine diphosphate binding domain K08M4_05590 PF17831 Pyruvate dehydrogenase E1 component middle domain K08M4_05600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K08M4_05600 PF02817 e3 binding domain K08M4_05600 PF00364 Biotin-requiring enzyme K08M4_05610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M4_05610 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_05620 PF00440 Bacterial regulatory proteins, tetR family K08M4_05630 PF00156 Phosphoribosyl transferase domain K08M4_05640 PF00484 Carbonic anhydrase K08M4_05650 PF00916 Sulfate permease family K08M4_05650 PF01740 STAS domain K08M4_05660 PF00005 ABC transporter K08M4_05670 PF01061 ABC-2 type transporter K08M4_05700 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K08M4_05710 PF12627 Probable RNA and SrmB- binding site of polymerase A K08M4_05710 PF12626 Polymerase A arginine-rich C-terminus K08M4_05710 PF01743 Poly A polymerase head domain K08M4_05720 PF00749 tRNA synthetases class I (E and Q), catalytic domain K08M4_05730 PF01258 Prokaryotic dksA/traR C4-type zinc finger K08M4_05750 PF00271 Helicase conserved C-terminal domain K08M4_05750 PF00270 DEAD/DEAH box helicase K08M4_05750 PF08482 ATP-dependent helicase C-terminal K08M4_05750 PF04408 Helicase associated domain (HA2) K08M4_05760 PF14814 Bifunctional transglycosylase second domain K08M4_05760 PF00905 Penicillin binding protein transpeptidase domain K08M4_05760 PF00912 Transglycosylase K08M4_05770 PF01734 Patatin-like phospholipase K08M4_05780 PF11791 Aconitate B N-terminal domain K08M4_05780 PF00330 Aconitase family (aconitate hydratase) K08M4_05780 PF06434 Aconitate hydratase 2 N-terminus K08M4_05790 PF06062 Uncharacterised protein family (UPF0231) K08M4_05810 PF00543 Nitrogen regulatory protein P-II K08M4_05820 PF00909 Ammonium Transporter Family K08M4_05830 PF13416 Bacterial extracellular solute-binding protein K08M4_05850 PF08402 TOBE domain K08M4_05850 PF00005 ABC transporter K08M4_05860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K08M4_05860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K08M4_05860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K08M4_05860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K08M4_05870 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain K08M4_05870 PF06165 Glycosyltransferase family 36 K08M4_05880 PF02838 Glycosyl hydrolase family 20, domain 2 K08M4_05880 PF00728 Glycosyl hydrolase family 20, catalytic domain K08M4_05890 PF01869 BadF/BadG/BcrA/BcrD ATPase family K08M4_05910 PF00005 ABC transporter K08M4_05910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_05920 PF00005 ABC transporter K08M4_05920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_05930 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M4_05930 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_05940 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_05950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_05960 PF17149 Periplasmic sensor domain found in signal transduction proteins K08M4_05960 PF00072 Response regulator receiver domain K08M4_05960 PF01627 Hpt domain K08M4_05960 PF00512 His Kinase A (phospho-acceptor) domain K08M4_05960 PF00672 HAMP domain K08M4_05960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_05970 PF08468 Methyltransferase small domain N-terminal K08M4_05970 PF05175 Methyltransferase small domain K08M4_05980 PF01594 AI-2E family transporter K08M4_06030 PF00873 AcrB/AcrD/AcrF family K08M4_06040 PF01476 LysM domain K08M4_06040 PF08525 Opacity-associated protein A N-terminal motif K08M4_06040 PF01551 Peptidase family M23 K08M4_06050 PF00579 tRNA synthetases class I (W and Y) K08M4_06060 PF00571 CBS domain K08M4_06060 PF01769 Divalent cation transporter K08M4_06060 PF03448 MgtE intracellular N domain K08M4_06070 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family K08M4_06080 PF13609 Gram-negative porin K08M4_06090 PF03449 Transcription elongation factor, N-terminal K08M4_06090 PF01272 Transcription elongation factor, GreA/GreB, C-term K08M4_06100 PF01985 CRS1 / YhbY (CRM) domain K08M4_06120 PF00004 ATPase family associated with various cellular activities (AAA) K08M4_06120 PF17862 AAA+ lid domain K08M4_06120 PF06480 FtsH Extracellular K08M4_06120 PF01434 Peptidase family M41 K08M4_06130 PF00809 Pterin binding enzyme K08M4_06150 PF03840 Preprotein translocase SecG subunit K08M4_06190 PF00575 S1 RNA binding domain K08M4_06190 PF08529 NusA N-terminal domain K08M4_06190 PF13184 NusA-like KH domain K08M4_06250 PF07719 Tetratricopeptide repeat K08M4_06250 PF13181 Tetratricopeptide repeat K08M4_06270 PF01554 MatE K08M4_06300 PF03707 Bacterial signalling protein N terminal repeat K08M4_06300 PF00990 Diguanylate cyclase, GGDEF domain K08M4_06300 PF00563 EAL domain K08M4_06320 PF13508 Acetyltransferase (GNAT) domain K08M4_06340 PF00583 Acetyltransferase (GNAT) family K08M4_06360 PF03466 LysR substrate binding domain K08M4_06360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_06400 PF01026 TatD related DNase K08M4_06410 PF07662 Na+ dependent nucleoside transporter C-terminus K08M4_06410 PF07670 Nucleoside recognition K08M4_06410 PF01773 Na+ dependent nucleoside transporter N-terminus K08M4_06430 PF02885 Glycosyl transferase family, helical bundle domain K08M4_06430 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain K08M4_06430 PF00591 Glycosyl transferase family, a/b domain K08M4_06440 PF01676 Metalloenzyme superfamily K08M4_06450 PF01048 Phosphorylase superfamily K08M4_06470 PF18429 Domain of unknown function (DUF5609) K08M4_06490 PF18073 Rubredoxin metal binding domain K08M4_06500 PF03144 Elongation factor Tu domain 2 K08M4_06500 PF00009 Elongation factor Tu GTP binding domain K08M4_06500 PF03764 Elongation factor G, domain IV K08M4_06500 PF14492 Elongation Factor G, domain II K08M4_06500 PF00679 Elongation factor G C-terminus K08M4_06560 PF09905 DNA-binding protein VF530 K08M4_06610 PF00501 AMP-binding enzyme K08M4_06620 PF12833 Helix-turn-helix domain K08M4_06620 PF02311 AraC-like ligand binding domain K08M4_06670 PF00263 Bacterial type II and III secretion system protein K08M4_06670 PF13629 Pilus formation protein N terminal region K08M4_06670 PF04972 BON domain K08M4_06730 PF00437 Type II/IV secretion system protein K08M4_06790 PF01209 ubiE/COQ5 methyltransferase family K08M4_06800 PF02417 Chromate transporter K08M4_06820 PF03466 LysR substrate binding domain K08M4_06820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_06880 PF01546 Peptidase family M20/M25/M40 K08M4_06880 PF07687 Peptidase dimerisation domain K08M4_06890 PF00860 Permease family K08M4_06920 PF07417 Sigma factor-binding transcriptional regulator Crl K08M4_06930 PF00696 Amino acid kinase family K08M4_06930 PF01472 PUA domain K08M4_06960 PF01872 RibD C-terminal domain K08M4_06960 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K08M4_06970 PF00677 Lumazine binding domain K08M4_06980 PF00925 GTP cyclohydrolase II K08M4_06980 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase K08M4_06990 PF00885 6,7-dimethyl-8-ribityllumazine synthase K08M4_07010 PF00586 AIR synthase related protein, N-terminal domain K08M4_07010 PF02769 AIR synthase related protein, C-terminal domain K08M4_07020 PF04608 Phosphatidylglycerophosphatase A K08M4_07040 PF00348 Polyprenyl synthetase K08M4_07060 PF01618 MotA/TolQ/ExbB proton channel family K08M4_07070 PF13677 Membrane MotB of proton-channel complex MotA/MotB K08M4_07070 PF00691 OmpA family K08M4_07090 PF03466 LysR substrate binding domain K08M4_07090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_07130 PF07715 TonB-dependent Receptor Plug Domain K08M4_07130 PF00593 TonB dependent receptor K08M4_07160 PF04359 Protein of unknown function (DUF493) K08M4_07170 PF00768 D-alanyl-D-alanine carboxypeptidase K08M4_07170 PF07943 Penicillin-binding protein 5, C-terminal domain K08M4_07180 PF05036 Sporulation related domain K08M4_07180 PF03330 Lytic transglycolase K08M4_07190 PF01098 Cell cycle protein K08M4_07200 PF03717 Penicillin-binding Protein dimerisation domain K08M4_07200 PF00905 Penicillin binding protein transpeptidase domain K08M4_07230 PF14840 Processivity clamp loader gamma complex DNA pol III C-term K08M4_07230 PF06144 DNA polymerase III, delta subunit K08M4_07240 PF04390 Lipopolysaccharide-assembly K08M4_07260 PF07295 Zinc-ribbon containing domain K08M4_07270 PF00795 Carbon-nitrogen hydrolase K08M4_07280 PF00571 CBS domain K08M4_07280 PF03471 Transporter associated domain K08M4_07300 PF02562 PhoH-like protein K08M4_07310 PF00919 Uncharacterized protein family UPF0004 K08M4_07310 PF04055 Radical SAM superfamily K08M4_07310 PF01938 TRAM domain K08M4_07320 PF01494 FAD binding domain K08M4_07330 PF10282 Lactonase, 7-bladed beta-propeller K08M4_07530 PF01926 50S ribosome-binding GTPase K08M4_07530 PF06071 Protein of unknown function (DUF933) K08M4_07550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase K08M4_07550 PF14572 Phosphoribosyl synthetase-associated domain K08M4_07600 PF13847 Methyltransferase domain K08M4_07600 PF17827 PrmC N-terminal domain K08M4_07610 PF04247 Invasion gene expression up-regulator, SirB K08M4_07620 PF13369 Transglutaminase-like superfamily K08M4_07640 PF02872 5'-nucleotidase, C-terminal domain K08M4_07640 PF00149 Calcineurin-like phosphoesterase K08M4_07650 PF04073 Aminoacyl-tRNA editing domain K08M4_07660 PF00849 RNA pseudouridylate synthase K08M4_07660 PF01479 S4 domain K08M4_07670 PF01713 Smr domain K08M4_07710 PF00728 Glycosyl hydrolase family 20, catalytic domain K08M4_07710 PF02838 Glycosyl hydrolase family 20, domain 2 K08M4_07710 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain K08M4_07710 PF03173 Putative carbohydrate binding domain K08M4_07740 PF00403 Heavy-metal-associated domain K08M4_07750 PF00749 tRNA synthetases class I (E and Q), catalytic domain K08M4_07760 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M4_07760 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M4_07790 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M4_07790 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M4_07840 PF00221 Aromatic amino acid lyase K08M4_07850 PF00535 Glycosyl transferase family 2 K08M4_07870 PF00501 AMP-binding enzyme K08M4_07870 PF13193 AMP-binding enzyme C-terminal domain K08M4_07890 PF00550 Phosphopantetheine attachment site K08M4_07900 PF00550 Phosphopantetheine attachment site K08M4_07950 PF04820 Tryptophan halogenase K08M4_08020 PF13144 Chaperone for flagella basal body P-ring formation K08M4_08030 PF01584 CheW-like domain K08M4_08030 PF00072 Response regulator receiver domain K08M4_08040 PF01739 CheR methyltransferase, SAM binding domain K08M4_08040 PF03705 CheR methyltransferase, all-alpha domain K08M4_08050 PF00460 Flagella basal body rod protein K08M4_08060 PF00460 Flagella basal body rod protein K08M4_08060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M4_08070 PF13860 FlgD Ig-like domain K08M4_08070 PF13861 FlgD Tudor-like domain K08M4_08070 PF03963 Flagellar hook capping protein - N-terminal region K08M4_08080 PF00460 Flagella basal body rod protein K08M4_08080 PF07559 Flagellar basal body protein FlaE K08M4_08080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M4_08090 PF00460 Flagella basal body rod protein K08M4_08090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M4_08100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M4_08100 PF00460 Flagella basal body rod protein K08M4_08130 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K08M4_08130 PF10135 Rod binding protein K08M4_08140 PF07196 Flagellin hook IN motif K08M4_08140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal K08M4_08160 PF07196 Flagellin hook IN motif K08M4_08160 PF00669 Bacterial flagellin N-terminal helical region K08M4_08160 PF00700 Bacterial flagellin C-terminal helical region K08M4_08180 PF00669 Bacterial flagellin N-terminal helical region K08M4_08180 PF07196 Flagellin hook IN motif K08M4_08180 PF00700 Bacterial flagellin C-terminal helical region K08M4_08190 PF00669 Bacterial flagellin N-terminal helical region K08M4_08190 PF07196 Flagellin hook IN motif K08M4_08190 PF00700 Bacterial flagellin C-terminal helical region K08M4_08200 PF03646 FlaG protein K08M4_08210 PF02465 Flagellar hook-associated protein 2 N-terminus K08M4_08210 PF07195 Flagellar hook-associated protein 2 C-terminus K08M4_08210 PF07196 Flagellin hook IN motif K08M4_08230 PF02561 Flagellar protein FliS K08M4_08240 PF00158 Sigma-54 interaction domain K08M4_08240 PF02954 Bacterial regulatory protein, Fis family K08M4_08240 PF00072 Response regulator receiver domain K08M4_08250 PF00512 His Kinase A (phospho-acceptor) domain K08M4_08250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_08260 PF00158 Sigma-54 interaction domain K08M4_08260 PF00072 Response regulator receiver domain K08M4_08260 PF02954 Bacterial regulatory protein, Fis family K08M4_08270 PF02049 Flagellar hook-basal body complex protein FliE K08M4_08280 PF01514 Secretory protein of YscJ/FliF family K08M4_08280 PF08345 Flagellar M-ring protein C-terminal K08M4_08290 PF01706 FliG C-terminal domain K08M4_08290 PF14841 FliG middle domain K08M4_08290 PF14842 FliG N-terminal domain K08M4_08310 PF18269 T3SS EscN ATPase C-terminal domain K08M4_08310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M4_08350 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K08M4_08350 PF02154 Flagellar motor switch protein FliM K08M4_08360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term K08M4_08370 PF04347 Flagellar biosynthesis protein, FliO K08M4_08380 PF00813 FliP family K08M4_08390 PF01313 Bacterial export proteins, family 3 K08M4_08400 PF01311 Bacterial export proteins, family 1 K08M4_08410 PF01312 FlhB HrpN YscU SpaS Family K08M4_08420 PF00771 FHIPEP family K08M4_08430 PF00448 SRP54-type protein, GTPase domain K08M4_08440 PF10609 NUBPL iron-transfer P-loop NTPase K08M4_08450 PF04542 Sigma-70 region 2 K08M4_08450 PF04539 Sigma-70 region 3 K08M4_08450 PF04545 Sigma-70, region 4 K08M4_08460 PF00072 Response regulator receiver domain K08M4_08470 PF04344 Chemotaxis phosphatase, CheZ K08M4_08480 PF01627 Hpt domain K08M4_08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_08480 PF02895 Signal transducing histidine kinase, homodimeric domain K08M4_08480 PF07194 P2 response regulator binding domain K08M4_08480 PF01584 CheW-like domain K08M4_08490 PF00072 Response regulator receiver domain K08M4_08490 PF01339 CheB methylesterase K08M4_08500 PF13614 AAA domain K08M4_08520 PF01584 CheW-like domain K08M4_08540 PF00005 ABC transporter K08M4_08550 PF03379 CcmB protein K08M4_08560 PF01578 Cytochrome C assembly protein K08M4_08570 PF04995 Heme exporter protein D (CcmD) K08M4_08590 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K08M4_08590 PF01578 Cytochrome C assembly protein K08M4_08600 PF08534 Redoxin K08M4_08610 PF03918 Cytochrome C biogenesis protein K08M4_08620 PF03918 Cytochrome C biogenesis protein K08M4_08630 PF04333 MlaA lipoprotein K08M4_08640 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K08M4_08650 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K08M4_08670 PF08281 Sigma-70, region 4 K08M4_08670 PF04542 Sigma-70 region 2 K08M4_08680 PF00108 Thiolase, N-terminal domain K08M4_08680 PF02803 Thiolase, C-terminal domain K08M4_08690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain K08M4_08690 PF00378 Enoyl-CoA hydratase/isomerase K08M4_08690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain K08M4_08700 PF00675 Insulinase (Peptidase family M16) K08M4_08700 PF05193 Peptidase M16 inactive domain K08M4_08700 PF16187 Middle or third domain of peptidase_M16 K08M4_08710 PF00300 Histidine phosphatase superfamily (branch 1) K08M4_08720 PF01713 Smr domain K08M4_08730 PF05175 Methyltransferase small domain K08M4_08740 PF01810 LysE type translocator K08M4_08770 PF00486 Transcriptional regulatory protein, C terminal K08M4_08770 PF00072 Response regulator receiver domain K08M4_08780 PF00512 His Kinase A (phospho-acceptor) domain K08M4_08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_08780 PF00672 HAMP domain K08M4_08790 PF01547 Bacterial extracellular solute-binding protein K08M4_08810 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_08820 PF00005 ABC transporter K08M4_08820 PF03459 TOBE domain K08M4_08820 PF17912 MalK OB fold domain K08M4_08830 PF01926 50S ribosome-binding GTPase K08M4_08830 PF13167 GTP-binding GTPase N-terminal K08M4_08830 PF16360 GTP-binding GTPase Middle Region K08M4_08840 PF03776 Septum formation topological specificity factor MinE K08M4_08850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K08M4_08880 PF13406 Transglycosylase SLT domain K08M4_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_08890 PF03466 LysR substrate binding domain K08M4_08900 PF07662 Na+ dependent nucleoside transporter C-terminus K08M4_08900 PF01773 Na+ dependent nucleoside transporter N-terminus K08M4_08900 PF07670 Nucleoside recognition K08M4_08940 PF13673 Acetyltransferase (GNAT) domain K08M4_08950 PF01264 Chorismate synthase K08M4_08980 PF03458 UPF0126 domain K08M4_08990 PF04315 Elongation factor P hydroxylase K08M4_09000 PF08891 YfcL protein K08M4_09010 PF03358 NADPH-dependent FMN reductase K08M4_09020 PF05430 S-adenosyl-L-methionine-dependent methyltransferase K08M4_09020 PF01266 FAD dependent oxidoreductase K08M4_09030 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M4_09030 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M4_09060 PF01118 Semialdehyde dehydrogenase, NAD binding domain K08M4_09060 PF02774 Semialdehyde dehydrogenase, dimerisation domain K08M4_09090 PF17848 Acetyl-coA carboxylase zinc finger domain K08M4_09090 PF01039 Carboxyl transferase domain K08M4_09100 PF02875 Mur ligase family, glutamate ligase domain K08M4_09100 PF08245 Mur ligase middle domain K08M4_09110 PF05036 Sporulation related domain K08M4_09120 PF02674 Colicin V production protein K08M4_09130 PF00156 Phosphoribosyl transferase domain K08M4_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_09140 PF03466 LysR substrate binding domain K08M4_09150 PF00072 Response regulator receiver domain K08M4_09170 PF04304 Protein of unknown function (DUF454) K08M4_09190 PF12169 DNA polymerase III subunits gamma and tau domain III K08M4_09190 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding K08M4_09190 PF12170 DNA polymerase III tau subunit V interacting with alpha K08M4_09220 PF00230 Major intrinsic protein K08M4_09230 PF03692 Putative zinc- or iron-chelating domain K08M4_09250 PF00245 Alkaline phosphatase K08M4_09260 PF02028 BCCT, betaine/carnitine/choline family transporter K08M4_09290 PF13847 Methyltransferase domain K08M4_09300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_09300 PF13426 PAS domain K08M4_09300 PF08447 PAS fold K08M4_09310 PF01263 Aldose 1-epimerase K08M4_09320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M4_09320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K08M4_09330 PF01641 SelR domain K08M4_09350 PF07023 Protein of unknown function (DUF1315) K08M4_09360 PF00710 Asparaginase, N-terminal K08M4_09360 PF17763 Glutaminase/Asparaginase C-terminal domain K08M4_09370 PF01343 Peptidase family S49 K08M4_09380 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_09380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M4_09390 PF00881 Nitroreductase family K08M4_09400 PF01751 Toprim domain K08M4_09400 PF01131 DNA topoisomerase K08M4_09420 PF00106 short chain dehydrogenase K08M4_09430 PF00850 Histone deacetylase domain K08M4_09450 PF02082 Transcriptional regulator K08M4_09490 PF11893 Domain of unknown function (DUF3413) K08M4_09490 PF00884 Sulfatase K08M4_09540 PF03553 Na+/H+ antiporter family K08M4_09550 PF01118 Semialdehyde dehydrogenase, NAD binding domain K08M4_09550 PF02774 Semialdehyde dehydrogenase, dimerisation domain K08M4_09560 PF00027 Cyclic nucleotide-binding domain K08M4_09560 PF00520 Ion transport protein K08M4_09570 PF01914 MarC family integral membrane protein K08M4_09580 PF00465 Iron-containing alcohol dehydrogenase K08M4_09580 PF00171 Aldehyde dehydrogenase family K08M4_09610 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain K08M4_09610 PF02777 Iron/manganese superoxide dismutases, C-terminal domain K08M4_09620 PF00462 Glutaredoxin K08M4_09640 PF13726 Na+-H+ antiporter family K08M4_09640 PF03553 Na+/H+ antiporter family K08M4_09650 PF00929 Exonuclease K08M4_09660 PF00691 OmpA family K08M4_09660 PF18393 MotY N-terminal domain K08M4_09670 PF10952 Protein of unknown function (DUF2753) K08M4_09680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M4_09690 PF00633 Helix-hairpin-helix motif K08M4_09690 PF00730 HhH-GPD superfamily base excision DNA repair protein K08M4_09690 PF10576 Iron-sulfur binding domain of endonuclease III K08M4_09730 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit K08M4_09730 PF12838 4Fe-4S dicluster domain K08M4_09730 PF13375 RnfC Barrel sandwich hybrid domain K08M4_09730 PF10531 SLBB domain K08M4_09770 PF17757 UvrB interaction domain K08M4_09770 PF12344 Ultra-violet resistance protein B K08M4_09770 PF02151 UvrB/uvrC motif K08M4_09770 PF04851 Type III restriction enzyme, res subunit K08M4_09770 PF00271 Helicase conserved C-terminal domain K08M4_09780 PF00158 Sigma-54 interaction domain K08M4_09780 PF00072 Response regulator receiver domain K08M4_09780 PF02954 Bacterial regulatory protein, Fis family K08M4_09790 PF01627 Hpt domain K08M4_09800 PF01933 Uncharacterised protein family UPF0052 K08M4_09820 PF00994 Probable molybdopterin binding domain K08M4_09840 PF02597 ThiS family K08M4_09850 PF02391 MoaE protein K08M4_09860 PF01609 Transposase DDE domain K08M4_09860 PF13006 Insertion element 4 transposase N-terminal K08M4_09870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_09880 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_09890 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_09890 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M4_09900 PF00005 ABC transporter K08M4_09900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_09910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_09910 PF00005 ABC transporter K08M4_09920 PF13409 Glutathione S-transferase, N-terminal domain K08M4_09930 PF03707 Bacterial signalling protein N terminal repeat K08M4_09930 PF00990 Diguanylate cyclase, GGDEF domain K08M4_09930 PF00563 EAL domain K08M4_09950 PF01515 Phosphate acetyl/butaryl transferase K08M4_09950 PF07085 DRTGG domain K08M4_09960 PF00871 Acetokinase family K08M4_09990 PF00990 Diguanylate cyclase, GGDEF domain K08M4_10000 PF01207 Dihydrouridine synthase (Dus) K08M4_10010 PF07963 Prokaryotic N-terminal methylation motif K08M4_10010 PF00114 Pilin (bacterial filament) K08M4_10020 PF02810 SEC-C motif K08M4_10020 PF01043 SecA preprotein cross-linking domain K08M4_10020 PF07517 SecA DEAD-like domain K08M4_10020 PF07516 SecA Wing and Scaffold domain K08M4_10030 PF02600 Disulfide bond formation protein DsbB K08M4_10050 PF00392 Bacterial regulatory proteins, gntR family K08M4_10050 PF07840 FadR C-terminal domain K08M4_10080 PF10609 NUBPL iron-transfer P-loop NTPase K08M4_10100 PF05170 AsmA family K08M4_10110 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP K08M4_10110 PF12557 Cob(I)alamin adenosyltransferase N terminal K08M4_10120 PF01451 Low molecular weight phosphotyrosine protein phosphatase K08M4_10130 PF01740 STAS domain K08M4_10130 PF00916 Sulfate permease family K08M4_10140 PF10150 Ribonuclease E/G family K08M4_10140 PF00575 S1 RNA binding domain K08M4_10140 PF12111 Polyribonucleotide phosphorylase C terminal K08M4_10150 PF01479 S4 domain K08M4_10150 PF00849 RNA pseudouridylate synthase K08M4_10160 PF02545 Maf-like protein K08M4_10170 PF02620 Large ribosomal RNA subunit accumulation protein YceD K08M4_10200 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K08M4_10200 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K08M4_10210 PF00698 Acyl transferase domain K08M4_10230 PF00550 Phosphopantetheine attachment site K08M4_10240 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M4_10240 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M4_10250 PF01063 Amino-transferase class IV K08M4_10260 PF02618 YceG-like family K08M4_10270 PF02223 Thymidylate kinase K08M4_10280 PF09115 DNA polymerase III, delta subunit, C terminal K08M4_10290 PF01026 TatD related DNase K08M4_10300 PF02378 Phosphotransferase system, EIIC K08M4_10300 PF00367 phosphotransferase system, EIIB K08M4_10330 PF00209 Sodium:neurotransmitter symporter family K08M4_10360 PF01734 Patatin-like phospholipase K08M4_10370 PF02887 Pyruvate kinase, alpha/beta domain K08M4_10370 PF00224 Pyruvate kinase, barrel domain K08M4_10380 PF00480 ROK family K08M4_10390 PF00072 Response regulator receiver domain K08M4_10390 PF01584 CheW-like domain K08M4_10400 PF01336 OB-fold nucleic acid binding domain K08M4_10400 PF02811 PHP domain K08M4_10400 PF14579 Helix-hairpin-helix motif K08M4_10400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K08M4_10400 PF07733 Bacterial DNA polymerase III alpha NTPase domain K08M4_10420 PF00154 recA bacterial DNA recombination protein K08M4_10430 PF00106 short chain dehydrogenase K08M4_10440 PF01343 Peptidase family S49 K08M4_10440 PF08496 Peptidase family S49 N-terminal K08M4_10450 PF04293 SpoVR like protein K08M4_10460 PF04285 Protein of unknown function (DUF444) K08M4_10470 PF06798 PrkA serine protein kinase C-terminal domain K08M4_10470 PF08298 PrkA AAA domain K08M4_10490 PF04055 Radical SAM superfamily K08M4_10510 PF01228 Glycine radical K08M4_10510 PF02901 Pyruvate formate lyase-like K08M4_10530 PF00005 ABC transporter K08M4_10540 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M4_10550 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_10560 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_10580 PF03372 Endonuclease/Exonuclease/phosphatase family K08M4_10590 PF00326 Prolyl oligopeptidase family K08M4_10590 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K08M4_10600 PF07690 Major Facilitator Superfamily K08M4_10610 PF00672 HAMP domain K08M4_10610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_10620 PF08007 Cupin superfamily protein K08M4_10630 PF10689 Protein of unknown function (DUF2496) K08M4_10650 PF01925 Sulfite exporter TauE/SafE K08M4_10660 PF13307 Helicase C-terminal domain K08M4_10660 PF06733 DEAD_2 K08M4_10670 PF13609 Gram-negative porin K08M4_10680 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) K08M4_10690 PF00849 RNA pseudouridylate synthase K08M4_10700 PF03971 Monomeric isocitrate dehydrogenase K08M4_10720 PF00313 'Cold-shock' DNA-binding domain K08M4_10740 PF10431 C-terminal, D2-small domain, of ClpB protein K08M4_10740 PF02861 Clp amino terminal domain, pathogenicity island component K08M4_10740 PF17871 AAA lid domain K08M4_10740 PF07724 AAA domain (Cdc48 subfamily) K08M4_10740 PF00004 ATPase family associated with various cellular activities (AAA) K08M4_10750 PF01176 Translation initiation factor 1A / IF-1 K08M4_10760 PF04377 Arginine-tRNA-protein transferase, C terminus K08M4_10760 PF04376 Arginine-tRNA-protein transferase, N terminus K08M4_10800 PF10692 Protein of unknown function (DUF2498) K08M4_10810 PF01396 Topoisomerase DNA binding C4 zinc finger K08M4_10810 PF01751 Toprim domain K08M4_10810 PF01131 DNA topoisomerase K08M4_10810 PF08272 Topoisomerase I zinc-ribbon-like K08M4_10820 PF00483 Nucleotidyl transferase K08M4_10870 PF04993 TfoX N-terminal domain K08M4_10870 PF04994 TfoX C-terminal domain K08M4_10900 PF00486 Transcriptional regulatory protein, C terminal K08M4_10900 PF00072 Response regulator receiver domain K08M4_10920 PF02698 DUF218 domain K08M4_10950 PF04288 MukE-like family K08M4_10960 PF04310 MukB N-terminal K08M4_10960 PF16330 MukB hinge domain K08M4_10970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_10970 PF00672 HAMP domain K08M4_10970 PF02743 Cache domain K08M4_11000 PF18030 RimK PreATP-grasp domain K08M4_11000 PF08443 RimK-like ATP-grasp domain K08M4_11030 PF01904 Protein of unknown function DUF72 K08M4_11080 PF01654 Cytochrome bd terminal oxidase subunit I K08M4_11090 PF02322 Cytochrome bd terminal oxidase subunit II K08M4_11100 PF08173 Membrane bound YbgT-like protein K08M4_11120 PF03061 Thioesterase superfamily K08M4_11130 PF01618 MotA/TolQ/ExbB proton channel family K08M4_11140 PF02472 Biopolymer transport protein ExbD/TolR K08M4_11170 PF00691 OmpA family K08M4_11180 PF16331 TolA binding protein trimerisation K08M4_11180 PF13174 Tetratricopeptide repeat K08M4_11190 PF02445 Quinolinate synthetase A protein K08M4_11200 PF07715 TonB-dependent Receptor Plug Domain K08M4_11210 PF04954 Siderophore-interacting protein K08M4_11210 PF08021 Siderophore-interacting FAD-binding domain K08M4_11220 PF01497 Periplasmic binding protein K08M4_11230 PF01032 FecCD transport family K08M4_11240 PF01032 FecCD transport family K08M4_11250 PF00005 ABC transporter K08M4_11280 PF00512 His Kinase A (phospho-acceptor) domain K08M4_11280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_11280 PF09308 LuxQ, periplasmic K08M4_11280 PF00072 Response regulator receiver domain K08M4_11290 PF06610 L-alanine exporter K08M4_11310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_11310 PF03466 LysR substrate binding domain K08M4_11360 PF00072 Response regulator receiver domain K08M4_11360 PF00486 Transcriptional regulatory protein, C terminal K08M4_11370 PF00535 Glycosyl transferase family 2 K08M4_11380 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase K08M4_11400 PF11842 Domain of unknown function (DUF3362) K08M4_11400 PF04055 Radical SAM superfamily K08M4_11400 PF08497 Radical SAM N-terminal K08M4_11430 PF03466 LysR substrate binding domain K08M4_11430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_11440 PF01717 Cobalamin-independent synthase, Catalytic domain K08M4_11440 PF08267 Cobalamin-independent synthase, N-terminal domain K08M4_11460 PF03795 YCII-related domain K08M4_11470 PF03061 Thioesterase superfamily K08M4_11500 PF03466 LysR substrate binding domain K08M4_11500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_11510 PF00155 Aminotransferase class I and II K08M4_11520 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M4_11530 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K08M4_11530 PF00072 Response regulator receiver domain K08M4_11530 PF01627 Hpt domain K08M4_11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_11530 PF00512 His Kinase A (phospho-acceptor) domain K08M4_11530 PF00672 HAMP domain K08M4_11540 PF00563 EAL domain K08M4_11540 PF01590 GAF domain K08M4_11540 PF00360 Phytochrome region K08M4_11540 PF00990 Diguanylate cyclase, GGDEF domain K08M4_11550 PF00672 HAMP domain K08M4_11550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_11590 PF01066 CDP-alcohol phosphatidyltransferase K08M4_11600 PF00005 ABC transporter K08M4_11610 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_11620 PF13416 Bacterial extracellular solute-binding protein K08M4_11640 PF06945 Protein of unknown function (DUF1289) K08M4_11660 PF01910 Thiamine-binding protein K08M4_11680 PF00270 DEAD/DEAH box helicase K08M4_11680 PF00271 Helicase conserved C-terminal domain K08M4_11690 PF01810 LysE type translocator K08M4_11710 PF00246 Zinc carboxypeptidase K08M4_11710 PF18027 Cytosolic carboxypeptidase N-terminal domain K08M4_11740 PF00571 CBS domain K08M4_11740 PF00005 ABC transporter K08M4_11750 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_11760 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K08M4_11780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_11780 PF03466 LysR substrate binding domain K08M4_11800 PF00664 ABC transporter transmembrane region K08M4_11800 PF00005 ABC transporter K08M4_11810 PF00005 ABC transporter K08M4_11810 PF00664 ABC transporter transmembrane region K08M4_11820 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_11870 PF00266 Aminotransferase class-V K08M4_11890 PF03466 LysR substrate binding domain K08M4_11890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_11900 PF00990 Diguanylate cyclase, GGDEF domain K08M4_11920 PF00072 Response regulator receiver domain K08M4_11920 PF00990 Diguanylate cyclase, GGDEF domain K08M4_11930 PF00939 Sodium:sulfate symporter transmembrane region K08M4_11940 PF02698 DUF218 domain K08M4_11950 PF00390 Malic enzyme, N-terminal domain K08M4_11950 PF03949 Malic enzyme, NAD binding domain K08M4_11960 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold K08M4_11960 PF00271 Helicase conserved C-terminal domain K08M4_11960 PF11898 Domain of unknown function (DUF3418) K08M4_11960 PF00270 DEAD/DEAH box helicase K08M4_11960 PF04408 Helicase associated domain (HA2) K08M4_12020 PF00691 OmpA family K08M4_12050 PF01565 FAD binding domain K08M4_12050 PF13183 4Fe-4S dicluster domain K08M4_12050 PF02913 FAD linked oxidases, C-terminal domain K08M4_12060 PF04191 Phospholipid methyltransferase K08M4_12090 PF00221 Aromatic amino acid lyase K08M4_12110 PF00491 Arginase family K08M4_12120 PF01979 Amidohydrolase family K08M4_12130 PF07702 UTRA domain K08M4_12130 PF00392 Bacterial regulatory proteins, gntR family K08M4_12140 PF07070 SpoOM protein K08M4_12210 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K08M4_12210 PF03129 Anticodon binding domain K08M4_12210 PF02824 TGS domain K08M4_12210 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) K08M4_12220 PF05198 Translation initiation factor IF-3, N-terminal domain K08M4_12220 PF00707 Translation initiation factor IF-3, C-terminal domain K08M4_12280 PF12848 ABC transporter K08M4_12280 PF16326 ABC transporter C-terminal domain K08M4_12280 PF00005 ABC transporter K08M4_12290 PF17932 Tetracyclin repressor-like, C-terminal domain K08M4_12290 PF00440 Bacterial regulatory proteins, tetR family K08M4_12300 PF00171 Aldehyde dehydrogenase family K08M4_12310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain K08M4_12310 PF17944 Arginine decarboxylase C-terminal helical extension K08M4_12310 PF17810 Arginine decarboxylase helical bundle domain K08M4_12320 PF00491 Arginase family K08M4_12350 PF00474 Sodium:solute symporter family K08M4_12360 PF01081 KDPG and KHG aldolase K08M4_12370 PF00294 pfkB family carbohydrate kinase K08M4_12380 PF07883 Cupin domain K08M4_12390 PF07940 Heparinase II/III-like protein K08M4_12390 PF05426 Alginate lyase K08M4_12400 PF07940 Heparinase II/III-like protein K08M4_12400 PF05426 Alginate lyase K08M4_12410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M4_12410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K08M4_12430 PF07729 FCD domain K08M4_12430 PF00392 Bacterial regulatory proteins, gntR family K08M4_12440 PF07729 FCD domain K08M4_12440 PF00392 Bacterial regulatory proteins, gntR family K08M4_12450 PF00571 CBS domain K08M4_12460 PF01336 OB-fold nucleic acid binding domain K08M4_12460 PF07733 Bacterial DNA polymerase III alpha NTPase domain K08M4_12460 PF14579 Helix-hairpin-helix motif K08M4_12460 PF11490 DNA polymerase III polC-type N-terminus II K08M4_12460 PF02811 PHP domain K08M4_12460 PF14480 DNA polymerase III polC-type N-terminus I K08M4_12460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K08M4_12460 PF00929 Exonuclease K08M4_12480 PF00474 Sodium:solute symporter family K08M4_12490 PF01641 SelR domain K08M4_12490 PF01625 Peptide methionine sulfoxide reductase K08M4_12520 PF01212 Beta-eliminating lyase K08M4_12530 PF03466 LysR substrate binding domain K08M4_12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_12600 PF00939 Sodium:sulfate symporter transmembrane region K08M4_12610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_12610 PF00512 His Kinase A (phospho-acceptor) domain K08M4_12610 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M4_12620 PF00072 Response regulator receiver domain K08M4_12620 PF00158 Sigma-54 interaction domain K08M4_12620 PF02954 Bacterial regulatory protein, Fis family K08M4_12650 PF01965 DJ-1/PfpI family K08M4_12670 PF08267 Cobalamin-independent synthase, N-terminal domain K08M4_12670 PF01717 Cobalamin-independent synthase, Catalytic domain K08M4_12690 PF01925 Sulfite exporter TauE/SafE K08M4_12710 PF02074 Carboxypeptidase Taq (M32) metallopeptidase K08M4_12720 PF01810 LysE type translocator K08M4_12730 PF01235 Sodium:alanine symporter family K08M4_12770 PF01235 Sodium:alanine symporter family K08M4_12790 PF00216 Bacterial DNA-binding protein K08M4_12830 PF13280 WYL domain K08M4_12830 PF08279 HTH domain K08M4_12840 PF17200 Single Cache domain 2 K08M4_12840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_12840 PF00672 HAMP domain K08M4_12860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_12860 PF03466 LysR substrate binding domain K08M4_12880 PF02668 Taurine catabolism dioxygenase TauD, TfdA family K08M4_12890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_12890 PF00072 Response regulator receiver domain K08M4_12900 PF00155 Aminotransferase class I and II K08M4_12910 PF00155 Aminotransferase class I and II K08M4_12910 PF00392 Bacterial regulatory proteins, gntR family K08M4_12930 PF02492 CobW/HypB/UreG, nucleotide-binding domain K08M4_12930 PF07683 Cobalamin synthesis protein cobW C-terminal domain K08M4_12940 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_12980 PF02222 ATP-grasp domain K08M4_13000 PF04172 LrgB-like family K08M4_13010 PF03788 LrgA family K08M4_13020 PF08411 Exonuclease C-terminal K08M4_13020 PF00929 Exonuclease K08M4_13030 PF04116 Fatty acid hydroxylase superfamily K08M4_13060 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) K08M4_13100 PF13460 NAD(P)H-binding K08M4_13110 PF01613 Flavin reductase like domain K08M4_13130 PF02654 Cobalamin-5-phosphate synthase K08M4_13140 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase K08M4_13170 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family K08M4_13180 PF01032 FecCD transport family K08M4_13240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_13240 PF03466 LysR substrate binding domain K08M4_13280 PF00583 Acetyltransferase (GNAT) family K08M4_13300 PF13185 GAF domain K08M4_13300 PF00990 Diguanylate cyclase, GGDEF domain K08M4_13320 PF07690 Major Facilitator Superfamily K08M4_13330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_13330 PF03466 LysR substrate binding domain K08M4_13350 PF01863 Protein of unknown function DUF45 K08M4_13360 PF05971 RNA methyltransferase K08M4_13410 PF01546 Peptidase family M20/M25/M40 K08M4_13410 PF07687 Peptidase dimerisation domain K08M4_13450 PF00589 Phage integrase family K08M4_13450 PF13356 Arm DNA-binding domain K08M4_13530 PF04002 RadC-like JAB domain K08M4_13540 PF00075 RNase H K08M4_13660 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) K08M4_13660 PF00271 Helicase conserved C-terminal domain K08M4_13660 PF04851 Type III restriction enzyme, res subunit K08M4_13660 PF08463 EcoEI R protein C-terminal K08M4_13670 PF02384 N-6 DNA Methylase K08M4_13680 PF01420 Type I restriction modification DNA specificity domain K08M4_13730 PF12102 Domain of unknown function (DUF3578) K08M4_13730 PF07728 AAA domain (dynein-related subfamily) K08M4_13770 PF03466 LysR substrate binding domain K08M4_13770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_13800 PF00672 HAMP domain K08M4_13800 PF12729 Four helix bundle sensory module for signal transduction K08M4_13800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_13820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_13820 PF03466 LysR substrate binding domain K08M4_13830 PF00593 TonB dependent receptor K08M4_13830 PF07715 TonB-dependent Receptor Plug Domain K08M4_13850 PF00583 Acetyltransferase (GNAT) family K08M4_13880 PF00149 Calcineurin-like phosphoesterase K08M4_13880 PF12320 Type 5 capsule protein repressor C-terminal domain K08M4_13890 PF13476 AAA domain K08M4_13940 PF04244 Deoxyribodipyrimidine photo-lyase-related protein K08M4_13950 PF00582 Universal stress protein family K08M4_14000 PF07690 Major Facilitator Superfamily K08M4_14010 PF03009 Glycerophosphoryl diester phosphodiesterase family K08M4_14030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M4_14030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K08M4_14070 PF00293 NUDIX domain K08M4_14100 PF01479 S4 domain K08M4_14100 PF00849 RNA pseudouridylate synthase K08M4_14170 PF03737 Aldolase/RraA K08M4_14210 PF00293 NUDIX domain K08M4_14250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M4_14300 PF07517 SecA DEAD-like domain K08M4_14300 PF07516 SecA Wing and Scaffold domain K08M4_14300 PF02810 SEC-C motif K08M4_14300 PF01043 SecA preprotein cross-linking domain K08M4_14330 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_14380 PF01136 Peptidase family U32 K08M4_14380 PF12392 Collagenase K08M4_14400 PF00664 ABC transporter transmembrane region K08M4_14400 PF00005 ABC transporter K08M4_14410 PF00005 ABC transporter K08M4_14420 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M4_14430 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_14440 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_14450 PF13495 Phage integrase, N-terminal SAM-like domain K08M4_14450 PF00589 Phage integrase family K08M4_14460 PF04986 Putative transposase K08M4_14460 PF14319 Transposase zinc-binding domain K08M4_14590 PF02694 Uncharacterised BCR, YnfA/UPF0060 family K08M4_14610 PF02321 Outer membrane efflux protein K08M4_14620 PF00873 AcrB/AcrD/AcrF family K08M4_14640 PF03466 LysR substrate binding domain K08M4_14640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_14660 PF02743 Cache domain K08M4_14660 PF00672 HAMP domain K08M4_14660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_14670 PF02397 Bacterial sugar transferase K08M4_14690 PF00534 Glycosyl transferases group 1 K08M4_14690 PF13439 Glycosyltransferase Family 4 K08M4_14740 PF13439 Glycosyltransferase Family 4 K08M4_14740 PF00534 Glycosyl transferases group 1 K08M4_14750 PF00158 Sigma-54 interaction domain K08M4_14750 PF00072 Response regulator receiver domain K08M4_14750 PF02954 Bacterial regulatory protein, Fis family K08M4_14770 PF00571 CBS domain K08M4_14770 PF00005 ABC transporter K08M4_14780 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_14830 PF01389 OmpA-like transmembrane domain K08M4_14830 PF00691 OmpA family K08M4_14850 PF14743 DNA ligase OB-like domain K08M4_14850 PF01068 ATP dependent DNA ligase domain K08M4_14860 PF01554 MatE K08M4_14870 PF00677 Lumazine binding domain K08M4_14910 PF00877 NlpC/P60 family K08M4_14920 PF12729 Four helix bundle sensory module for signal transduction K08M4_14920 PF00672 HAMP domain K08M4_14920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_14970 PF00994 Probable molybdopterin binding domain K08M4_14970 PF03454 MoeA C-terminal region (domain IV) K08M4_14970 PF03453 MoeA N-terminal region (domain I and II) K08M4_14990 PF00005 ABC transporter K08M4_14990 PF08402 TOBE domain K08M4_15000 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_15010 PF12849 PBP superfamily domain K08M4_15020 PF02954 Bacterial regulatory protein, Fis family K08M4_15020 PF00158 Sigma-54 interaction domain K08M4_15020 PF00072 Response regulator receiver domain K08M4_15030 PF00512 His Kinase A (phospho-acceptor) domain K08M4_15030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_15060 PF12848 ABC transporter K08M4_15060 PF00005 ABC transporter K08M4_15070 PF02634 FdhD/NarQ family K08M4_15110 PF02613 Nitrate reductase delta subunit K08M4_15130 PF00384 Molybdopterin oxidoreductase K08M4_15130 PF01568 Molydopterin dinucleotide binding domain K08M4_15130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K08M4_15140 PF13247 4Fe-4S dicluster domain K08M4_15170 PF00909 Ammonium Transporter Family K08M4_15180 PF02146 Sir2 family K08M4_15190 PF00990 Diguanylate cyclase, GGDEF domain K08M4_15200 PF13416 Bacterial extracellular solute-binding protein K08M4_15210 PF13416 Bacterial extracellular solute-binding protein K08M4_15220 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_15230 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_15240 PF00005 ABC transporter K08M4_15240 PF08402 TOBE domain K08M4_15280 PF01171 PP-loop family K08M4_15290 PF00582 Universal stress protein family K08M4_15300 PF00027 Cyclic nucleotide-binding domain K08M4_15300 PF13545 Crp-like helix-turn-helix domain K08M4_15330 PF00403 Heavy-metal-associated domain K08M4_15350 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP K08M4_15350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K08M4_15380 PF00115 Cytochrome C and Quinol oxidase polypeptide I K08M4_15410 PF00072 Response regulator receiver domain K08M4_15410 PF09308 LuxQ, periplasmic K08M4_15410 PF00512 His Kinase A (phospho-acceptor) domain K08M4_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_15510 PF13358 DDE superfamily endonuclease K08M4_15570 PF05362 Lon protease (S16) C-terminal proteolytic domain K08M4_15570 PF13654 AAA domain K08M4_15580 PF07977 FabA-like domain K08M4_15590 PF04957 Ribosome modulation factor K08M4_15630 PF10672 S-adenosylmethionine-dependent methyltransferase K08M4_15630 PF01170 Putative RNA methylase family UPF0020 K08M4_15630 PF02926 THUMP domain K08M4_15640 PF07126 Cell-division protein ZapC K08M4_15660 PF05088 Bacterial NAD-glutamate dehydrogenase K08M4_15680 PF11940 Domain of unknown function (DUF3458) Ig-like fold K08M4_15680 PF17432 Domain of unknown function (DUF3458_C) ARM repeats K08M4_15680 PF01433 Peptidase family M1 domain K08M4_15700 PF11818 C-terminal domain of tail specific protease (DUF3340) K08M4_15700 PF03572 Peptidase family S41 K08M4_15700 PF17804 Tail specific protease N-terminal domain K08M4_15700 PF00595 PDZ domain K08M4_15720 PF13185 GAF domain K08M4_15730 PF00005 ABC transporter K08M4_15730 PF00664 ABC transporter transmembrane region K08M4_15740 PF04403 Paraquat-inducible protein A K08M4_15750 PF02470 MlaD protein K08M4_15770 PF17783 CvfB-like winged helix domain K08M4_15770 PF13509 S1 domain K08M4_15800 PF00391 PEP-utilising enzyme, mobile domain K08M4_15800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K08M4_15800 PF02896 PEP-utilising enzyme, TIM barrel domain K08M4_15810 PF00793 DAHP synthetase I family K08M4_15830 PF14824 Sirohaem biosynthesis protein central K08M4_15830 PF10414 Sirohaem synthase dimerisation region K08M4_15830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M4_15840 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M4_15850 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_15860 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_15870 PF00005 ABC transporter K08M4_15880 PF01027 Inhibitor of apoptosis-promoting Bax1 K08M4_15890 PF04358 DsrC like protein K08M4_15900 PF00708 Acylphosphatase K08M4_15910 PF00672 HAMP domain K08M4_15910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_15910 PF12729 Four helix bundle sensory module for signal transduction K08M4_15920 PF17785 PUA-like domain K08M4_15920 PF10672 S-adenosylmethionine-dependent methyltransferase K08M4_15970 PF00990 Diguanylate cyclase, GGDEF domain K08M4_15970 PF17151 Periplasmic sensor domain K08M4_15980 PF06508 Queuosine biosynthesis protein QueC K08M4_15990 PF04055 Radical SAM superfamily K08M4_16050 PF00501 AMP-binding enzyme K08M4_16050 PF16177 Acetyl-coenzyme A synthetase N-terminus K08M4_16050 PF13193 AMP-binding enzyme C-terminal domain K08M4_16060 PF04303 PrpF protein K08M4_16070 PF00694 Aconitase C-terminal domain K08M4_16070 PF00330 Aconitase family (aconitate hydratase) K08M4_16080 PF00285 Citrate synthase, C-terminal domain K08M4_16140 PF01970 Tripartite tricarboxylate transporter TctA family K08M4_16170 PF09905 DNA-binding protein VF530 K08M4_16180 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain K08M4_16180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M4_16190 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase K08M4_16200 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain K08M4_16200 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain K08M4_16210 PF00072 Response regulator receiver domain K08M4_16210 PF12431 Transcriptional regulator K08M4_16220 PF00989 PAS fold K08M4_16220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_16220 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain K08M4_16220 PF17203 Single cache domain 3 K08M4_16250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_16290 PF02001 Protein of unknown function DUF134 K08M4_16450 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K08M4_16460 PF02152 Dihydroneopterin aldolase K08M4_16470 PF01227 GTP cyclohydrolase I K08M4_16500 PF01734 Patatin-like phospholipase K08M4_16580 PF03484 tRNA synthetase B5 domain K08M4_16580 PF01588 Putative tRNA binding domain K08M4_16580 PF03147 Ferredoxin-fold anticodon binding domain K08M4_16580 PF03483 B3/4 domain K08M4_16580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain K08M4_16600 PF00072 Response regulator receiver domain K08M4_16600 PF00990 Diguanylate cyclase, GGDEF domain K08M4_16680 PF04408 Helicase associated domain (HA2) K08M4_16680 PF00270 DEAD/DEAH box helicase K08M4_16680 PF11898 Domain of unknown function (DUF3418) K08M4_16680 PF00271 Helicase conserved C-terminal domain K08M4_16680 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold K08M4_16690 PF01915 Glycosyl hydrolase family 3 C-terminal domain K08M4_16690 PF00933 Glycosyl hydrolase family 3 N terminal domain K08M4_16690 PF14310 Fibronectin type III-like domain K08M4_16710 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_16720 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_16730 PF13416 Bacterial extracellular solute-binding protein K08M4_16740 PF00356 Bacterial regulatory proteins, lacI family K08M4_16750 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain K08M4_16760 PF00005 ABC transporter K08M4_16760 PF17912 MalK OB fold domain K08M4_16760 PF03459 TOBE domain K08M4_16840 PF08448 PAS fold K08M4_16840 PF00990 Diguanylate cyclase, GGDEF domain K08M4_16860 PF00012 Hsp70 protein K08M4_16870 PF00012 Hsp70 protein K08M4_16900 PF13302 Acetyltransferase (GNAT) domain K08M4_16910 PF00158 Sigma-54 interaction domain K08M4_16910 PF18024 Helix-turn-helix domain K08M4_16920 PF05128 Domain of unknown function (DUF697) K08M4_16930 PF04317 YcjX-like family, DUF463 K08M4_16960 PF04715 Anthranilate synthase component I, N terminal region K08M4_16960 PF00425 chorismate binding enzyme K08M4_16980 PF00512 His Kinase A (phospho-acceptor) domain K08M4_16980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_16980 PF09308 LuxQ, periplasmic K08M4_16980 PF00072 Response regulator receiver domain K08M4_17000 PF00293 NUDIX domain K08M4_17020 PF03222 Tryptophan/tyrosine permease family K08M4_17030 PF03313 Serine dehydratase alpha chain K08M4_17030 PF03315 Serine dehydratase beta chain K08M4_17040 PF03222 Tryptophan/tyrosine permease family K08M4_17060 PF01242 6-pyruvoyl tetrahydropterin synthase K08M4_17070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_17070 PF02743 Cache domain K08M4_17070 PF00672 HAMP domain K08M4_17080 PF01740 STAS domain K08M4_17080 PF00916 Sulfate permease family K08M4_17090 PF00152 tRNA synthetases class II (D, K and N) K08M4_17090 PF01336 OB-fold nucleic acid binding domain K08M4_17120 PF00392 Bacterial regulatory proteins, gntR family K08M4_17120 PF00155 Aminotransferase class I and II K08M4_17140 PF00672 HAMP domain K08M4_17140 PF01966 HD domain K08M4_17180 PF00155 Aminotransferase class I and II K08M4_17220 PF03473 MOSC domain K08M4_17220 PF03475 3-alpha domain K08M4_17230 PF00266 Aminotransferase class-V K08M4_17250 PF00989 PAS fold K08M4_17250 PF00512 His Kinase A (phospho-acceptor) domain K08M4_17250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_17260 PF00072 Response regulator receiver domain K08M4_17260 PF00158 Sigma-54 interaction domain K08M4_17260 PF02954 Bacterial regulatory protein, Fis family K08M4_17280 PF04994 TfoX C-terminal domain K08M4_17280 PF04993 TfoX N-terminal domain K08M4_17300 PF03956 Lysine exporter LysO K08M4_17320 PF00282 Pyridoxal-dependent decarboxylase conserved domain K08M4_17340 PF01418 Helix-turn-helix domain, rpiR family K08M4_17340 PF01380 SIS domain K08M4_17350 PF00465 Iron-containing alcohol dehydrogenase K08M4_17360 PF00462 Glutaredoxin K08M4_17380 PF07055 Enoyl reductase FAD binding domain K08M4_17380 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase K08M4_17380 PF12241 Trans-2-enoyl-CoA reductase catalytic region K08M4_17390 PF02770 Acyl-CoA dehydrogenase, middle domain K08M4_17390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K08M4_17390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K08M4_17390 PF09317 Domain of unknown function (DUF1974) K08M4_17400 PF00440 Bacterial regulatory proteins, tetR family K08M4_17400 PF16295 Tetracyclin repressor-like, C-terminal domain K08M4_17450 PF06965 Na+/H+ antiporter 1 K08M4_17480 PF00005 ABC transporter K08M4_17490 PF01554 MatE K08M4_17500 PF13460 NAD(P)H-binding K08M4_17500 PF11066 Protein of unknown function (DUF2867) K08M4_17520 PF07690 Major Facilitator Superfamily K08M4_17530 PF00849 RNA pseudouridylate synthase K08M4_17530 PF01479 S4 domain K08M4_17540 PF04851 Type III restriction enzyme, res subunit K08M4_17540 PF00271 Helicase conserved C-terminal domain K08M4_17550 PF03707 Bacterial signalling protein N terminal repeat K08M4_17550 PF13188 PAS domain K08M4_17550 PF00990 Diguanylate cyclase, GGDEF domain K08M4_17550 PF00563 EAL domain K08M4_17570 PF00072 Response regulator receiver domain K08M4_17570 PF00486 Transcriptional regulatory protein, C terminal K08M4_17580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_17580 PF00672 HAMP domain K08M4_17580 PF00512 His Kinase A (phospho-acceptor) domain K08M4_17600 PF09335 SNARE associated Golgi protein K08M4_17610 PF00535 Glycosyl transferase family 2 K08M4_17610 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 K08M4_17690 PF05016 ParE toxin of type II toxin-antitoxin system, parDE K08M4_17700 PF13495 Phage integrase, N-terminal SAM-like domain K08M4_17700 PF00589 Phage integrase family K08M4_17740 PF04986 Putative transposase K08M4_17740 PF14319 Transposase zinc-binding domain K08M4_17750 PF00589 Phage integrase family K08M4_17750 PF13495 Phage integrase, N-terminal SAM-like domain K08M4_17760 PF04986 Putative transposase K08M4_17760 PF14319 Transposase zinc-binding domain K08M4_17770 PF00589 Phage integrase family K08M4_17770 PF13495 Phage integrase, N-terminal SAM-like domain K08M4_17780 PF00589 Phage integrase family K08M4_17780 PF13495 Phage integrase, N-terminal SAM-like domain K08M4_17790 PF00067 Cytochrome P450 K08M4_17840 PF00268 Ribonucleotide reductase, small chain K08M4_17850 PF00317 Ribonucleotide reductase, all-alpha domain K08M4_17850 PF02867 Ribonucleotide reductase, barrel domain K08M4_17850 PF08343 Ribonucleotide reductase N-terminal K08M4_17860 PF07972 NrdI Flavodoxin like K08M4_17880 PF01521 Iron-sulphur cluster biosynthesis K08M4_17890 PF01458 Uncharacterized protein family (UPF0051) K08M4_17900 PF01458 Uncharacterized protein family (UPF0051) K08M4_17930 PF02657 Fe-S metabolism associated domain K08M4_17940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_17940 PF00672 HAMP domain K08M4_17940 PF02743 Cache domain K08M4_17950 PF02028 BCCT, betaine/carnitine/choline family transporter K08M4_17960 PF02028 BCCT, betaine/carnitine/choline family transporter K08M4_17970 PF00072 Response regulator receiver domain K08M4_17970 PF00196 Bacterial regulatory proteins, luxR family K08M4_17980 PF17200 Single Cache domain 2 K08M4_17980 PF07730 Histidine kinase K08M4_17990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K08M4_18010 PF03480 Bacterial extracellular solute-binding protein, family 7 K08M4_18040 PF00753 Metallo-beta-lactamase superfamily K08M4_18050 PF05951 Bacterial protein of unknown function (DUF882) K08M4_18060 PF03734 L,D-transpeptidase catalytic domain K08M4_18060 PF01471 Putative peptidoglycan binding domain K08M4_18110 PF00925 GTP cyclohydrolase II K08M4_18130 PF03918 Cytochrome C biogenesis protein K08M4_18140 PF08534 Redoxin K08M4_18150 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal K08M4_18150 PF01578 Cytochrome C assembly protein K08M4_18160 PF03916 Polysulphide reductase, NrfD K08M4_18170 PF13247 4Fe-4S dicluster domain K08M4_18190 PF02335 Cytochrome c552 K08M4_18200 PF00581 Rhodanese-like domain K08M4_18220 PF00521 DNA gyrase/topoisomerase IV, subunit A K08M4_18220 PF03989 DNA gyrase C-terminal domain, beta-propeller K08M4_18240 PF02867 Ribonucleotide reductase, barrel domain K08M4_18240 PF03477 ATP cone domain K08M4_18240 PF00317 Ribonucleotide reductase, all-alpha domain K08M4_18250 PF00268 Ribonucleotide reductase, small chain K08M4_18260 PF00175 Oxidoreductase NAD-binding domain K08M4_18260 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M4_18260 PF00970 Oxidoreductase FAD-binding domain K08M4_18270 PF00994 Probable molybdopterin binding domain K08M4_18320 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain K08M4_18330 PF16653 Saccharopine dehydrogenase C-terminal domain K08M4_18330 PF03435 Saccharopine dehydrogenase NADP binding domain K08M4_18340 PF00202 Aminotransferase class-III K08M4_18390 PF01066 CDP-alcohol phosphatidyltransferase K08M4_18400 PF08459 UvrC Helix-hairpin-helix N-terminal K08M4_18400 PF02151 UvrB/uvrC motif K08M4_18400 PF01541 GIY-YIG catalytic domain K08M4_18410 PF00196 Bacterial regulatory proteins, luxR family K08M4_18410 PF00072 Response regulator receiver domain K08M4_18420 PF00136 DNA polymerase family B K08M4_18420 PF03104 DNA polymerase family B, exonuclease domain K08M4_18450 PF04269 Protein of unknown function, DUF440 K08M4_18470 PF00849 RNA pseudouridylate synthase K08M4_18470 PF01479 S4 domain K08M4_18480 PF01300 Telomere recombination K08M4_18490 PF02811 PHP domain K08M4_18500 PF08056 Tryptophan operon leader peptide K08M4_18510 PF04715 Anthranilate synthase component I, N terminal region K08M4_18510 PF00425 chorismate binding enzyme K08M4_18520 PF00117 Glutamine amidotransferase class-I K08M4_18530 PF02885 Glycosyl transferase family, helical bundle domain K08M4_18530 PF00591 Glycosyl transferase family, a/b domain K08M4_18540 PF00218 Indole-3-glycerol phosphate synthase K08M4_18540 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase K08M4_18570 PF00375 Sodium:dicarboxylate symporter family K08M4_18580 PF01609 Transposase DDE domain K08M4_18580 PF13006 Insertion element 4 transposase N-terminal K08M4_18590 PF01170 Putative RNA methylase family UPF0020 K08M4_18590 PF02926 THUMP domain K08M4_18590 PF10672 S-adenosylmethionine-dependent methyltransferase K08M4_18600 PF00849 RNA pseudouridylate synthase K08M4_18610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_18610 PF12729 Four helix bundle sensory module for signal transduction K08M4_18610 PF00672 HAMP domain K08M4_18620 PF00209 Sodium:neurotransmitter symporter family K08M4_18630 PF13396 Phospholipase_D-nuclease N-terminal K08M4_18630 PF13091 PLD-like domain K08M4_18640 PF01053 Cys/Met metabolism PLP-dependent enzyme K08M4_18650 PF03352 Methyladenine glycosylase K08M4_18660 PF00873 AcrB/AcrD/AcrF family K08M4_18670 PF13533 Biotin-lipoyl like K08M4_18680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_18680 PF00529 HlyD membrane-fusion protein of T1SS K08M4_18690 PF04024 PspC domain K08M4_18700 PF06667 Phage shock protein B K08M4_18710 PF04012 PspA/IM30 family K08M4_18720 PF00158 Sigma-54 interaction domain K08M4_18720 PF02954 Bacterial regulatory protein, Fis family K08M4_18730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_18740 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_18750 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M4_18750 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_18760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_18760 PF00005 ABC transporter K08M4_18770 PF00005 ABC transporter K08M4_18800 PF01368 DHH family K08M4_18800 PF02833 DHHA2 domain K08M4_18820 PF00384 Molybdopterin oxidoreductase K08M4_18820 PF01568 Molydopterin dinucleotide binding domain K08M4_18820 PF18364 Molybdopterin oxidoreductase N-terminal domain K08M4_18830 PF03264 NapC/NirT cytochrome c family, N-terminal region K08M4_18840 PF06796 Periplasmic nitrate reductase protein NapE K08M4_18850 PF03649 Uncharacterised protein family (UPF0014) K08M4_18860 PF01226 Formate/nitrite transporter K08M4_18910 PF00265 Thymidine kinase K08M4_18930 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K08M4_18950 PF08668 HDOD domain K08M4_18950 PF00563 EAL domain K08M4_18960 PF02810 SEC-C motif K08M4_18970 PF01502 Phosphoribosyl-AMP cyclohydrolase K08M4_18970 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase K08M4_18990 PF00977 Histidine biosynthesis protein K08M4_19000 PF00117 Glutamine amidotransferase class-I K08M4_19010 PF08645 Polynucleotide kinase 3 phosphatase K08M4_19010 PF00475 Imidazoleglycerol-phosphate dehydratase K08M4_19020 PF00155 Aminotransferase class I and II K08M4_19030 PF00815 Histidinol dehydrogenase K08M4_19040 PF08029 HisG, C-terminal domain K08M4_19040 PF01634 ATP phosphoribosyltransferase K08M4_19050 PF03553 Na+/H+ antiporter family K08M4_19060 PF00816 H-NS histone family K08M4_19070 PF00294 pfkB family carbohydrate kinase K08M4_19110 PF08328 Adenylosuccinate lyase C-terminal K08M4_19110 PF00206 Lyase K08M4_19150 PF08241 Methyltransferase domain K08M4_19180 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K08M4_19210 PF08668 HDOD domain K08M4_19210 PF00563 EAL domain K08M4_19240 PF02810 SEC-C motif K08M4_19250 PF01502 Phosphoribosyl-AMP cyclohydrolase K08M4_19250 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase K08M4_19270 PF00977 Histidine biosynthesis protein K08M4_19280 PF00977 Histidine biosynthesis protein K08M4_19290 PF00977 Histidine biosynthesis protein K08M4_19300 PF00117 Glutamine amidotransferase class-I K08M4_19310 PF08645 Polynucleotide kinase 3 phosphatase K08M4_19310 PF00475 Imidazoleglycerol-phosphate dehydratase K08M4_19340 PF00815 Histidinol dehydrogenase K08M4_19350 PF00815 Histidinol dehydrogenase K08M4_19360 PF01634 ATP phosphoribosyltransferase K08M4_19360 PF08029 HisG, C-terminal domain K08M4_19370 PF03553 Na+/H+ antiporter family K08M4_19380 PF00816 H-NS histone family K08M4_19390 PF00294 pfkB family carbohydrate kinase K08M4_19430 PF00206 Lyase K08M4_19430 PF08328 Adenylosuccinate lyase C-terminal K08M4_19470 PF08241 Methyltransferase domain K08M4_19500 PF00202 Aminotransferase class-III K08M4_19530 PF12002 MgsA AAA+ ATPase C terminal K08M4_19530 PF16193 AAA C-terminal domain K08M4_19530 PF00004 ATPase family associated with various cellular activities (AAA) K08M4_19540 PF03548 Outer membrane lipoprotein carrier protein LolA K08M4_19550 PF01580 FtsK/SpoIIIE family K08M4_19550 PF09397 Ftsk gamma domain K08M4_19550 PF17854 FtsK alpha domain K08M4_19550 PF13491 4TM region of DNA translocase FtsK/SpoIIIE K08M4_19560 PF01037 Lrp/AsnC ligand binding domain K08M4_19570 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K08M4_19570 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K08M4_19590 PF03466 LysR substrate binding domain K08M4_19590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_19610 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) K08M4_19630 PF18073 Rubredoxin metal binding domain K08M4_19640 PF06305 Lipopolysaccharide assembly protein A domain K08M4_19660 PF00575 S1 RNA binding domain K08M4_19680 PF02348 Cytidylyltransferase K08M4_19710 PF00005 ABC transporter K08M4_19710 PF00664 ABC transporter transmembrane region K08M4_19720 PF00753 Metallo-beta-lactamase superfamily K08M4_19720 PF03772 Competence protein K08M4_19740 PF12704 MacB-like periplasmic core domain K08M4_19740 PF02687 FtsX-like permease family K08M4_19750 PF00005 ABC transporter K08M4_19760 PF12704 MacB-like periplasmic core domain K08M4_19760 PF02687 FtsX-like permease family K08M4_19780 PF02559 CarD-like/TRCF domain K08M4_19780 PF17757 UvrB interaction domain K08M4_19780 PF03461 TRCF domain K08M4_19780 PF00271 Helicase conserved C-terminal domain K08M4_19780 PF00270 DEAD/DEAH box helicase K08M4_19810 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_19840 PF13036 Peptidoglycan-synthase activator LpoB K08M4_19840 PF08139 Prokaryotic membrane lipoprotein lipid attachment site K08M4_19870 PF01230 HIT domain K08M4_19880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_19880 PF00672 HAMP domain K08M4_19900 PF01048 Phosphorylase superfamily K08M4_19910 PF00403 Heavy-metal-associated domain K08M4_19920 PF01554 MatE K08M4_19930 PF00571 CBS domain K08M4_19950 PF00591 Glycosyl transferase family, a/b domain K08M4_19950 PF02885 Glycosyl transferase family, helical bundle domain K08M4_19960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K08M4_19980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M4_19990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M4_20000 PF03466 LysR substrate binding domain K08M4_20000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_20030 PF14864 Alkyl sulfatase C-terminal K08M4_20030 PF14863 Alkyl sulfatase dimerisation K08M4_20030 PF00753 Metallo-beta-lactamase superfamily K08M4_20050 PF00873 AcrB/AcrD/AcrF family K08M4_20070 PF00440 Bacterial regulatory proteins, tetR family K08M4_20070 PF17932 Tetracyclin repressor-like, C-terminal domain K08M4_20080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_20080 PF03466 LysR substrate binding domain K08M4_20090 PF08803 Putative mono-oxygenase ydhR K08M4_20110 PF08212 Lipocalin-like domain K08M4_20120 PF01979 Amidohydrolase family K08M4_20140 PF00005 ABC transporter K08M4_20150 PF01497 Periplasmic binding protein K08M4_20160 PF01032 FecCD transport family K08M4_20180 PF07715 TonB-dependent Receptor Plug Domain K08M4_20180 PF00593 TonB dependent receptor K08M4_20250 PF03330 Lytic transglycolase K08M4_20250 PF05036 Sporulation related domain K08M4_20270 PF01810 LysE type translocator K08M4_20280 PF01037 Lrp/AsnC ligand binding domain K08M4_20280 PF13404 AsnC-type helix-turn-helix domain K08M4_20310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_20310 PF03466 LysR substrate binding domain K08M4_20320 PF11975 Family 4 glycosyl hydrolase C-terminal domain K08M4_20320 PF02056 Family 4 glycosyl hydrolase K08M4_20330 PF04794 YdjC-like protein K08M4_20340 PF00376 MerR family regulatory protein K08M4_20340 PF09278 MerR, DNA binding K08M4_20380 PF03109 ABC1 family K08M4_20390 PF00255 Glutathione peroxidase K08M4_20430 PF00535 Glycosyl transferase family 2 K08M4_20440 PF13439 Glycosyltransferase Family 4 K08M4_20440 PF00534 Glycosyl transferases group 1 K08M4_20450 PF01693 Caulimovirus viroplasmin K08M4_20510 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K08M4_20520 PF09619 Type III secretion system lipoprotein chaperone (YscW) K08M4_20550 PF01037 Lrp/AsnC ligand binding domain K08M4_20550 PF13404 AsnC-type helix-turn-helix domain K08M4_20560 PF00291 Pyridoxal-phosphate dependent enzyme K08M4_20580 PF00873 AcrB/AcrD/AcrF family K08M4_20590 PF13533 Biotin-lipoyl like K08M4_20690 PF07690 Major Facilitator Superfamily K08M4_20700 PF03601 Conserved hypothetical protein 698 K08M4_20720 PF00501 AMP-binding enzyme K08M4_20720 PF13193 AMP-binding enzyme C-terminal domain K08M4_20730 PF13378 Enolase C-terminal domain-like K08M4_20740 PF00378 Enoyl-CoA hydratase/isomerase K08M4_20750 PF00561 alpha/beta hydrolase fold K08M4_20770 PF00425 chorismate binding enzyme K08M4_20780 PF00155 Aminotransferase class I and II K08M4_20800 PF01966 HD domain K08M4_20800 PF13286 Phosphohydrolase-associated domain K08M4_20840 PF13145 PPIC-type PPIASE domain K08M4_20850 PF00216 Bacterial DNA-binding protein K08M4_20860 PF02190 ATP-dependent protease La (LON) substrate-binding domain K08M4_20860 PF05362 Lon protease (S16) C-terminal proteolytic domain K08M4_20860 PF00004 ATPase family associated with various cellular activities (AAA) K08M4_20900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_20900 PF02743 Cache domain K08M4_20900 PF00512 His Kinase A (phospho-acceptor) domain K08M4_20910 PF02954 Bacterial regulatory protein, Fis family K08M4_20910 PF00158 Sigma-54 interaction domain K08M4_20910 PF00072 Response regulator receiver domain K08M4_20930 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K08M4_20940 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component K08M4_20950 PF03480 Bacterial extracellular solute-binding protein, family 7 K08M4_20970 PF01648 4'-phosphopantetheinyl transferase superfamily K08M4_20980 PF16197 Ketoacyl-synthetase C-terminal extension K08M4_20980 PF00698 Acyl transferase domain K08M4_20980 PF00550 Phosphopantetheine attachment site K08M4_20980 PF08659 KR domain K08M4_20980 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M4_20980 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M4_20980 PF14765 Polyketide synthase dehydratase K08M4_21000 PF08659 KR domain K08M4_21000 PF14765 Polyketide synthase dehydratase K08M4_21000 PF00698 Acyl transferase domain K08M4_21000 PF16197 Ketoacyl-synthetase C-terminal extension K08M4_21000 PF00109 Beta-ketoacyl synthase, N-terminal domain K08M4_21000 PF02801 Beta-ketoacyl synthase, C-terminal domain K08M4_21000 PF00550 Phosphopantetheine attachment site K08M4_21010 PF03060 Nitronate monooxygenase K08M4_21010 PF00698 Acyl transferase domain K08M4_21020 PF00570 HRDC domain K08M4_21020 PF01612 3'-5' exonuclease K08M4_21030 PF13193 AMP-binding enzyme C-terminal domain K08M4_21030 PF00501 AMP-binding enzyme K08M4_21040 PF00561 alpha/beta hydrolase fold K08M4_21070 PF00814 Glycoprotease family K08M4_21080 PF13307 Helicase C-terminal domain K08M4_21080 PF04851 Type III restriction enzyme, res subunit K08M4_21100 PF00551 Formyl transferase K08M4_21100 PF01842 ACT domain K08M4_21110 PF06185 YecM protein K08M4_21150 PF02421 Ferrous iron transport protein B K08M4_21150 PF07670 Nucleoside recognition K08M4_21150 PF07664 Ferrous iron transport protein B C terminus K08M4_21160 PF04023 FeoA domain K08M4_21170 PF12833 Helix-turn-helix domain K08M4_21180 PF01297 Zinc-uptake complex component A periplasmic K08M4_21190 PF00005 ABC transporter K08M4_21200 PF00950 ABC 3 transport family K08M4_21210 PF00549 CoA-ligase K08M4_21210 PF02629 CoA binding domain K08M4_21230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) K08M4_21230 PF02817 e3 binding domain K08M4_21230 PF00364 Biotin-requiring enzyme K08M4_21240 PF00676 Dehydrogenase E1 component K08M4_21240 PF16870 2-oxoglutarate dehydrogenase C-terminal K08M4_21240 PF02779 Transketolase, pyrimidine binding domain K08M4_21240 PF16078 2-oxoglutarate dehydrogenase N-terminus K08M4_21250 PF13085 2Fe-2S iron-sulfur cluster binding domain K08M4_21260 PF00890 FAD binding domain K08M4_21260 PF02910 Fumarate reductase flavoprotein C-term K08M4_21270 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K08M4_21280 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K08M4_21290 PF00285 Citrate synthase, C-terminal domain K08M4_21300 PF01784 NIF3 (NGG1p interacting factor 3) K08M4_21320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K08M4_21320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K08M4_21320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K08M4_21320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K08M4_21340 PF12697 Alpha/beta hydrolase family K08M4_21360 PF00258 Flavodoxin K08M4_21380 PF01475 Ferric uptake regulator family K08M4_21400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K08M4_21400 PF02378 Phosphotransferase system, EIIC K08M4_21400 PF00367 phosphotransferase system, EIIB K08M4_21410 PF01979 Amidohydrolase family K08M4_21420 PF00480 ROK family K08M4_21420 PF01047 MarR family K08M4_21430 PF00999 Sodium/hydrogen exchanger family K08M4_21430 PF02254 TrkA-N domain K08M4_21440 PF00733 Asparagine synthase K08M4_21440 PF13537 Glutamine amidotransferase domain K08M4_21450 PF02357 Transcription termination factor nusG K08M4_21460 PF00854 POT family K08M4_21500 PF00486 Transcriptional regulatory protein, C terminal K08M4_21510 PF17323 Trans-membrane regulatory protein ToxS K08M4_21530 PF12850 Calcineurin-like phosphoesterase superfamily domain K08M4_21540 PF00571 CBS domain K08M4_21560 PF07556 Protein of unknown function (DUF1538) K08M4_21570 PF07556 Protein of unknown function (DUF1538) K08M4_21580 PF01370 NAD dependent epimerase/dehydratase family K08M4_21580 PF08338 Domain of unknown function (DUF1731) K08M4_21590 PF00106 short chain dehydrogenase K08M4_21600 PF00085 Thioredoxin K08M4_21610 PF01145 SPFH domain / Band 7 family K08M4_21610 PF16200 C-terminal region of band_7 K08M4_21780 PF01145 SPFH domain / Band 7 family K08M4_21780 PF16200 C-terminal region of band_7 K08M4_21800 PF13411 MerR HTH family regulatory protein K08M4_21830 PF13609 Gram-negative porin K08M4_21840 PF12826 Helix-hairpin-helix motif K08M4_21840 PF03120 NAD-dependent DNA ligase OB-fold domain K08M4_21840 PF03119 NAD-dependent DNA ligase C4 zinc finger domain K08M4_21840 PF01653 NAD-dependent DNA ligase adenylation domain K08M4_21840 PF00533 BRCA1 C Terminus (BRCT) domain K08M4_21850 PF01653 NAD-dependent DNA ligase adenylation domain K08M4_21850 PF03120 NAD-dependent DNA ligase OB-fold domain K08M4_21850 PF00533 BRCA1 C Terminus (BRCT) domain K08M4_21860 PF04354 ZipA, C-terminal FtsZ-binding domain K08M4_21880 PF00291 Pyridoxal-phosphate dependent enzyme K08M4_21890 PF00381 PTS HPr component phosphorylation site K08M4_21900 PF05524 PEP-utilising enzyme, N-terminal K08M4_21900 PF02896 PEP-utilising enzyme, TIM barrel domain K08M4_21900 PF00391 PEP-utilising enzyme, mobile domain K08M4_21910 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 K08M4_21920 PF00700 Bacterial flagellin C-terminal helical region K08M4_21920 PF07196 Flagellin hook IN motif K08M4_21920 PF00669 Bacterial flagellin N-terminal helical region K08M4_21930 PF00700 Bacterial flagellin C-terminal helical region K08M4_21930 PF00669 Bacterial flagellin N-terminal helical region K08M4_21930 PF07196 Flagellin hook IN motif K08M4_21940 PF04261 Dyp-type peroxidase family K08M4_21950 PF11143 Protein of unknown function (DUF2919) K08M4_22000 PF00924 Mechanosensitive ion channel K08M4_22000 PF12795 Mechanosensitive ion channel porin domain K08M4_22000 PF12794 Mechanosensitive ion channel inner membrane domain 1 K08M4_22020 PF18030 RimK PreATP-grasp domain K08M4_22020 PF08443 RimK-like ATP-grasp domain K08M4_22040 PF03960 ArsC family K08M4_22090 PF00701 Dihydrodipicolinate synthetase family K08M4_22100 PF01842 ACT domain K08M4_22110 PF00578 AhpC/TSA family K08M4_22120 PF01594 AI-2E family transporter K08M4_22140 PF13181 Tetratricopeptide repeat K08M4_22140 PF01435 Peptidase family M48 K08M4_22150 PF03960 ArsC family K08M4_22160 PF03358 NADPH-dependent FMN reductase K08M4_22190 PF00860 Permease family K08M4_22220 PF00551 Formyl transferase K08M4_22230 PF13230 Glutamine amidotransferases class-II K08M4_22240 PF13580 SIS domain K08M4_22250 PF02770 Acyl-CoA dehydrogenase, middle domain K08M4_22250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain K08M4_22250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain K08M4_22250 PF09317 Domain of unknown function (DUF1974) K08M4_22270 PF00929 Exonuclease K08M4_22290 PF08241 Methyltransferase domain K08M4_22310 PF01464 Transglycosylase SLT domain K08M4_22310 PF01476 LysM domain K08M4_22330 PF03372 Endonuclease/Exonuclease/phosphatase family K08M4_22340 PF00543 Nitrogen regulatory protein P-II K08M4_22350 PF00034 Cytochrome c K08M4_22380 PF07733 Bacterial DNA polymerase III alpha NTPase domain K08M4_22380 PF14579 Helix-hairpin-helix motif K08M4_22380 PF01336 OB-fold nucleic acid binding domain K08M4_22380 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K08M4_22380 PF02811 PHP domain K08M4_22400 PF02684 Lipid-A-disaccharide synthetase K08M4_22430 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD K08M4_22430 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_22440 PF03938 Outer membrane protein (OmpH-like) K08M4_22450 PF01103 Surface antigen K08M4_22450 PF07244 Surface antigen variable number repeat K08M4_22460 PF17820 PDZ domain K08M4_22460 PF02163 Peptidase family M50 K08M4_22470 PF13288 DXP reductoisomerase C-terminal domain K08M4_22470 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain K08M4_22470 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase K08M4_22490 PF01255 Putative undecaprenyl diphosphate synthase K08M4_22500 PF01765 Ribosome recycling factor K08M4_22510 PF00696 Amino acid kinase family K08M4_22530 PF00318 Ribosomal protein S2 K08M4_22540 PF00557 Metallopeptidase family M24 K08M4_22570 PF00849 RNA pseudouridylate synthase K08M4_22580 PF04287 tRNA pseudouridine synthase C K08M4_22640 PF03806 AbgT putative transporter family K08M4_22660 PF01980 tRNA-methyltransferase O K08M4_22660 PF18389 TrmO C-terminal domain K08M4_22730 PF13358 DDE superfamily endonuclease K08M4_22740 PF00464 Serine hydroxymethyltransferase K08M4_22760 PF16657 Maltogenic Amylase, C-terminal domain K08M4_22760 PF00128 Alpha amylase, catalytic domain K08M4_22770 PF02378 Phosphotransferase system, EIIC K08M4_22770 PF00367 phosphotransferase system, EIIB K08M4_22780 PF00356 Bacterial regulatory proteins, lacI family K08M4_22810 PF09383 NIL domain K08M4_22810 PF00005 ABC transporter K08M4_22820 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_22830 PF03180 NLPA lipoprotein K08M4_22840 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) K08M4_22880 PF00990 Diguanylate cyclase, GGDEF domain K08M4_22880 PF17158 Membrane-associated sensor, integral membrane domain K08M4_22890 PF03641 Possible lysine decarboxylase K08M4_22890 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases K08M4_22890 PF11892 Domain of unknown function (DUF3412) K08M4_22910 PF00209 Sodium:neurotransmitter symporter family K08M4_22940 PF09382 RQC domain K08M4_22940 PF16124 RecQ zinc-binding K08M4_22940 PF00570 HRDC domain K08M4_22940 PF00270 DEAD/DEAH box helicase K08M4_22940 PF00271 Helicase conserved C-terminal domain K08M4_22950 PF00817 impB/mucB/samB family K08M4_22950 PF11799 impB/mucB/samB family C-terminal domain K08M4_22950 PF11798 IMS family HHH motif K08M4_22960 PF00990 Diguanylate cyclase, GGDEF domain K08M4_22960 PF00072 Response regulator receiver domain K08M4_22970 PF04400 (Na+)-NQR maturation NqrM K08M4_22980 PF02424 ApbE family K08M4_22990 PF00175 Oxidoreductase NAD-binding domain K08M4_22990 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M4_22990 PF00970 Oxidoreductase FAD-binding domain K08M4_23020 PF04205 FMN-binding domain K08M4_23030 PF03116 NQR2, RnfD, RnfE family K08M4_23050 PF01722 BolA-like protein K08M4_23080 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD K08M4_23090 PF07690 Major Facilitator Superfamily K08M4_23100 PF03502 Nucleoside-specific channel-forming protein, Tsx K08M4_23110 PF02558 Ketopantoate reductase PanE/ApbA K08M4_23110 PF08546 Ketopantoate reductase PanE/ApbA C terminal K08M4_23120 PF00266 Aminotransferase class-V K08M4_23130 PF02657 Fe-S metabolism associated domain K08M4_23140 PF00899 ThiF family K08M4_23150 PF03562 MltA specific insert domain K08M4_23150 PF06725 3D domain K08M4_23190 PF13538 UvrD-like helicase C-terminal domain K08M4_23200 PF00580 UvrD/REP helicase N-terminal domain K08M4_23200 PF12705 PD-(D/E)XK nuclease superfamily K08M4_23200 PF13361 UvrD-like helicase C-terminal domain K08M4_23220 PF17946 RecC C-terminal domain K08M4_23240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_23240 PF03466 LysR substrate binding domain K08M4_23250 PF07130 YebG protein K08M4_23280 PF01914 MarC family integral membrane protein K08M4_23290 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle K08M4_23290 PF14602 Hexapeptide repeat of succinyl-transferase K08M4_23300 PF02769 AIR synthase related protein, C-terminal domain K08M4_23300 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain K08M4_23300 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal K08M4_23310 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M4_23310 PF01464 Transglycosylase SLT domain K08M4_23330 PF14437 MafB19-like deaminase K08M4_23340 PF03471 Transporter associated domain K08M4_23340 PF00571 CBS domain K08M4_23340 PF01595 Cyclin M transmembrane N-terminal domain K08M4_23360 PF03806 AbgT putative transporter family K08M4_23410 PF00114 Pilin (bacterial filament) K08M4_23410 PF07963 Prokaryotic N-terminal methylation motif K08M4_23440 PF01609 Transposase DDE domain K08M4_23440 PF13006 Insertion element 4 transposase N-terminal K08M4_23460 PF00375 Sodium:dicarboxylate symporter family K08M4_23490 PF02463 RecF/RecN/SMC N terminal domain K08M4_23500 PF04355 SmpA / OmlA family K08M4_23510 PF03658 RnfH family Ubiquitin K08M4_23520 PF03364 Polyketide cyclase / dehydrase and lipid transport K08M4_23530 PF01668 SmpB protein K08M4_23550 PF08443 RimK-like ATP-grasp domain K08M4_23550 PF18030 RimK PreATP-grasp domain K08M4_23580 PF04143 Sulphur transport K08M4_23600 PF01553 Acyltransferase K08M4_23610 PF00753 Metallo-beta-lactamase superfamily K08M4_23610 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain K08M4_23610 PF10996 Beta-Casp domain K08M4_23620 PF01235 Sodium:alanine symporter family K08M4_23630 PF01184 GPR1/FUN34/yaaH family K08M4_23640 PF06483 Chitinase C K08M4_23640 PF00704 Glycosyl hydrolases family 18 K08M4_23660 PF00571 CBS domain K08M4_23660 PF00478 IMP dehydrogenase / GMP reductase domain K08M4_23670 PF13742 OB-fold nucleic acid binding domain K08M4_23670 PF02601 Exonuclease VII, large subunit K08M4_23690 PF00990 Diguanylate cyclase, GGDEF domain K08M4_23690 PF08448 PAS fold K08M4_23700 PF02272 DHHA1 domain K08M4_23700 PF01411 tRNA synthetases class II (A) K08M4_23700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain K08M4_23720 PF13360 PQQ-like domain K08M4_23730 PF09976 Tetratricopeptide repeat-like domain K08M4_23760 PF13464 Domain of unknown function (DUF4115) K08M4_23800 PF04384 Iron-sulphur cluster assembly K08M4_23810 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M4_23840 PF01521 Iron-sulphur cluster biosynthesis K08M4_23850 PF01592 NifU-like N terminal domain K08M4_23880 PF00588 SpoU rRNA Methylase family K08M4_23890 PF00459 Inositol monophosphatase family K08M4_23900 PF07549 SecD/SecF GG Motif K08M4_23900 PF02355 Protein export membrane protein K08M4_23910 PF13721 SecD export protein N-terminal TM region K08M4_23910 PF02355 Protein export membrane protein K08M4_23910 PF07549 SecD/SecF GG Motif K08M4_23920 PF02699 Preprotein translocase subunit K08M4_23950 PF00571 CBS domain K08M4_23960 PF00356 Bacterial regulatory proteins, lacI family K08M4_23970 PF08244 Glycosyl hydrolases family 32 C terminal K08M4_23970 PF00251 Glycosyl hydrolases family 32 N-terminal domain K08M4_23980 PF02378 Phosphotransferase system, EIIC K08M4_23980 PF00367 phosphotransferase system, EIIB K08M4_23990 PF00294 pfkB family carbohydrate kinase K08M4_24000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_24010 PF03466 LysR substrate binding domain K08M4_24010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_24020 PF00578 AhpC/TSA family K08M4_24020 PF10417 C-terminal domain of 1-Cys peroxiredoxin K08M4_24060 PF01895 PhoU domain K08M4_24070 PF00005 ABC transporter K08M4_24080 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_24090 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_24100 PF13089 Polyphosphate kinase N-terminal domain K08M4_24100 PF17941 Polyphosphate kinase C-terminal domain 1 K08M4_24100 PF13090 Polyphosphate kinase C-terminal domain 2 K08M4_24100 PF02503 Polyphosphate kinase middle domain K08M4_24110 PF02541 Ppx/GppA phosphatase family K08M4_24120 PF12849 PBP superfamily domain K08M4_24130 PF00989 PAS fold K08M4_24130 PF11808 Phosphate regulon sensor protein PhoR K08M4_24130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_24130 PF00512 His Kinase A (phospho-acceptor) domain K08M4_24140 PF00486 Transcriptional regulatory protein, C terminal K08M4_24140 PF00072 Response regulator receiver domain K08M4_24170 PF12838 4Fe-4S dicluster domain K08M4_24190 PF03411 Penicillin-insensitive murein endopeptidase K08M4_24200 PF13358 DDE superfamily endonuclease K08M4_24270 PF00004 ATPase family associated with various cellular activities (AAA) K08M4_24270 PF17871 AAA lid domain K08M4_24270 PF07724 AAA domain (Cdc48 subfamily) K08M4_24270 PF02861 Clp amino terminal domain, pathogenicity island component K08M4_24270 PF10431 C-terminal, D2-small domain, of ClpB protein K08M4_24290 PF01479 S4 domain K08M4_24290 PF00849 RNA pseudouridylate synthase K08M4_24300 PF13525 Outer membrane lipoprotein K08M4_24310 PF01464 Transglycosylase SLT domain K08M4_24320 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein K08M4_24330 PF01817 Chorismate mutase type II K08M4_24330 PF00800 Prephenate dehydratase K08M4_24350 PF00990 Diguanylate cyclase, GGDEF domain K08M4_24350 PF00563 EAL domain K08M4_24360 PF01931 Protein of unknown function DUF84 K08M4_24380 PF01464 Transglycosylase SLT domain K08M4_24380 PF14718 Soluble lytic murein transglycosylase L domain K08M4_24390 PF12848 ABC transporter K08M4_24390 PF00005 ABC transporter K08M4_24400 PF07238 PilZ domain K08M4_24410 PF04225 Opacity-associated protein A LysM-like domain K08M4_24410 PF01551 Peptidase family M23 K08M4_24420 PF02153 Prephenate dehydrogenase K08M4_24420 PF01817 Chorismate mutase type II K08M4_24430 PF00793 DAHP synthetase I family K08M4_24440 PF00933 Glycosyl hydrolase family 3 N terminal domain K08M4_24450 PF03702 Anhydro-N-acetylmuramic acid kinase K08M4_24480 PF02554 Carbon starvation protein CstA K08M4_24490 PF07694 5TMR of 5TMR-LYT K08M4_24490 PF06580 Histidine kinase K08M4_24500 PF00072 Response regulator receiver domain K08M4_24500 PF04397 LytTr DNA-binding domain K08M4_24510 PF02401 LytB protein K08M4_24520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M4_24530 PF01252 Signal peptidase (SPase) II K08M4_24550 PF06574 FAD synthetase K08M4_24550 PF01687 Riboflavin kinase K08M4_24560 PF03023 Lipid II flippase MurJ K08M4_24580 PF01022 Bacterial regulatory protein, arsR family K08M4_24590 PF03466 LysR substrate binding domain K08M4_24590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_24600 PF02690 Na+/Pi-cotransporter K08M4_24630 PF01925 Sulfite exporter TauE/SafE K08M4_24640 PF00391 PEP-utilising enzyme, mobile domain K08M4_24640 PF05524 PEP-utilising enzyme, N-terminal K08M4_24640 PF01590 GAF domain K08M4_24640 PF02896 PEP-utilising enzyme, TIM barrel domain K08M4_24660 PF02976 DNA mismatch repair enzyme MutH K08M4_24690 PF02954 Bacterial regulatory protein, Fis family K08M4_24690 PF00158 Sigma-54 interaction domain K08M4_24690 PF02830 V4R domain K08M4_24690 PF06505 Activator of aromatic catabolism K08M4_24700 PF00152 tRNA synthetases class II (D, K and N) K08M4_24700 PF01336 OB-fold nucleic acid binding domain K08M4_24710 PF03462 PCRF domain K08M4_24710 PF00472 RF-1 domain K08M4_24720 PF17768 RecJ OB domain K08M4_24720 PF01368 DHH family K08M4_24720 PF02272 DHHA1 domain K08M4_24730 PF13098 Thioredoxin-like domain K08M4_24730 PF10411 Disulfide bond isomerase protein N-terminus K08M4_24740 PF00589 Phage integrase family K08M4_24740 PF02899 Phage integrase, N-terminal SAM-like domain K08M4_24750 PF00258 Flavodoxin K08M4_24760 PF05525 Branched-chain amino acid transport protein K08M4_24780 PF00270 DEAD/DEAH box helicase K08M4_24780 PF00271 Helicase conserved C-terminal domain K08M4_24800 PF01235 Sodium:alanine symporter family K08M4_24830 PF03167 Uracil DNA glycosylase superfamily K08M4_24840 PF01261 Xylose isomerase-like TIM barrel K08M4_24860 PF00291 Pyridoxal-phosphate dependent enzyme K08M4_24860 PF14821 Threonine synthase N terminus K08M4_24880 PF00696 Amino acid kinase family K08M4_24880 PF00742 Homoserine dehydrogenase K08M4_24880 PF01842 ACT domain K08M4_24880 PF03447 Homoserine dehydrogenase, NAD binding domain K08M4_24880 PF13840 ACT domain K08M4_24910 PF03737 Aldolase/RraA K08M4_24920 PF00486 Transcriptional regulatory protein, C terminal K08M4_24920 PF00072 Response regulator receiver domain K08M4_24940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_24940 PF00072 Response regulator receiver domain K08M4_24940 PF00512 His Kinase A (phospho-acceptor) domain K08M4_24940 PF18415 Histidine kinase receptor ArcB trans-membrane domain K08M4_24940 PF01627 Hpt domain K08M4_24940 PF00989 PAS fold K08M4_24950 PF01590 GAF domain K08M4_24950 PF00563 EAL domain K08M4_24950 PF00990 Diguanylate cyclase, GGDEF domain K08M4_24950 PF00360 Phytochrome region K08M4_24960 PF16199 Radical_SAM C-terminal domain K08M4_24960 PF04055 Radical SAM superfamily K08M4_24970 PF00310 Glutamine amidotransferases class-II K08M4_24970 PF04898 Glutamate synthase central domain K08M4_24970 PF01645 Conserved region in glutamate synthase K08M4_24970 PF01493 GXGXG motif K08M4_24980 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K08M4_24980 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_24990 PF01493 GXGXG motif K08M4_24990 PF01645 Conserved region in glutamate synthase K08M4_24990 PF00310 Glutamine amidotransferases class-II K08M4_24990 PF04898 Glutamate synthase central domain K08M4_25000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster K08M4_25000 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_25040 PF01497 Periplasmic binding protein K08M4_25050 PF03458 UPF0126 domain K08M4_25060 PF03466 LysR substrate binding domain K08M4_25060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_25070 PF01925 Sulfite exporter TauE/SafE K08M4_25080 PF02142 MGS-like domain K08M4_25080 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain K08M4_25080 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain K08M4_25090 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain K08M4_25090 PF00117 Glutamine amidotransferase class-I K08M4_25110 PF00293 NUDIX domain K08M4_25140 PF12327 FtsZ family, C-terminal domain K08M4_25140 PF00091 Tubulin/FtsZ family, GTPase domain K08M4_25150 PF02491 SHS2 domain inserted in FTSA K08M4_25160 PF08478 POTRA domain, FtsQ-type K08M4_25160 PF03799 Cell division protein FtsQ K08M4_25190 PF01098 Cell cycle protein K08M4_25220 PF02875 Mur ligase family, glutamate ligase domain K08M4_25220 PF08245 Mur ligase middle domain K08M4_25220 PF01225 Mur ligase family, catalytic domain K08M4_25230 PF08245 Mur ligase middle domain K08M4_25230 PF02875 Mur ligase family, glutamate ligase domain K08M4_25230 PF01225 Mur ligase family, catalytic domain K08M4_25240 PF00905 Penicillin binding protein transpeptidase domain K08M4_25240 PF03717 Penicillin-binding Protein dimerisation domain K08M4_25250 PF04999 Cell division protein FtsL K08M4_25270 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M4_25280 PF04348 LppC putative lipoprotein K08M4_25290 PF02021 Uncharacterised protein family UPF0102 K08M4_25300 PF13580 SIS domain K08M4_25310 PF04972 BON domain K08M4_25320 PF04386 Stringent starvation protein B K08M4_25330 PF02798 Glutathione S-transferase, N-terminal domain K08M4_25330 PF00043 Glutathione S-transferase, C-terminal domain K08M4_25340 PF02167 Cytochrome C1 family K08M4_25350 PF00033 Cytochrome b/b6/petB K08M4_25350 PF00032 Cytochrome b(C-terminal)/b6/petD K08M4_25360 PF00355 Rieske [2Fe-2S] domain K08M4_25360 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal K08M4_25390 PF03969 AFG1-like ATPase K08M4_25400 PF06295 Protein of unknown function (DUF1043) K08M4_25410 PF00595 PDZ domain K08M4_25420 PF13180 PDZ domain K08M4_25430 PF00521 DNA gyrase/topoisomerase IV, subunit A K08M4_25430 PF03989 DNA gyrase C-terminal domain, beta-propeller K08M4_25440 PF01751 Toprim domain K08M4_25440 PF00986 DNA gyrase B subunit, carboxyl terminus K08M4_25440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_25440 PF00204 DNA gyrase B K08M4_25450 PF05728 Uncharacterised protein family (UPF0227) K08M4_25460 PF00149 Calcineurin-like phosphoesterase K08M4_25470 PF06853 Protein of unknown function (DUF1249) K08M4_25480 PF00293 NUDIX domain K08M4_25490 PF02321 Outer membrane efflux protein K08M4_25510 PF08335 GlnD PII-uridylyltransferase K08M4_25510 PF03710 Glutamate-ammonia ligase adenylyltransferase K08M4_25520 PF02743 Cache domain K08M4_25520 PF00672 HAMP domain K08M4_25520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_25530 PF07885 Ion channel K08M4_25540 PF01928 CYTH domain K08M4_25550 PF01865 Protein of unknown function DUF47 K08M4_25560 PF01384 Phosphate transporter family K08M4_25570 PF08239 Bacterial SH3 domain K08M4_25590 PF13401 AAA domain K08M4_25590 PF01471 Putative peptidoglycan binding domain K08M4_25600 PF12627 Probable RNA and SrmB- binding site of polymerase A K08M4_25600 PF01966 HD domain K08M4_25600 PF01743 Poly A polymerase head domain K08M4_25620 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) K08M4_25630 PF02152 Dihydroneopterin aldolase K08M4_25650 PF12697 Alpha/beta hydrolase family K08M4_25680 PF09424 Yqey-like protein K08M4_25690 PF01807 CHC2 zinc finger K08M4_25690 PF08278 DNA primase DnaG DnaB-binding K08M4_25690 PF08275 DNA primase catalytic core, N-terminal domain K08M4_25690 PF10410 DnaB-helicase binding domain of primase K08M4_25700 PF04545 Sigma-70, region 4 K08M4_25700 PF04542 Sigma-70 region 2 K08M4_25700 PF04539 Sigma-70 region 3 K08M4_25700 PF00140 Sigma-70 factor, region 1.2 K08M4_25700 PF04546 Sigma-70, non-essential region K08M4_25700 PF03979 Sigma-70 factor, region 1.1 K08M4_25720 PF01053 Cys/Met metabolism PLP-dependent enzyme K08M4_25730 PF01380 SIS domain K08M4_25740 PF00455 DeoR C terminal sensor domain K08M4_25740 PF08220 DeoR-like helix-turn-helix domain K08M4_25750 PF00224 Pyruvate kinase, barrel domain K08M4_25750 PF02887 Pyruvate kinase, alpha/beta domain K08M4_25770 PF10369 Small subunit of acetolactate synthase K08M4_25780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K08M4_25780 PF00205 Thiamine pyrophosphate enzyme, central domain K08M4_25780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K08M4_25790 PF00501 AMP-binding enzyme K08M4_25800 PF03466 LysR substrate binding domain K08M4_25800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_25820 PF01569 PAP2 superfamily K08M4_25830 PF00873 AcrB/AcrD/AcrF family K08M4_25870 PF00180 Isocitrate/isopropylmalate dehydrogenase K08M4_25880 PF00330 Aconitase family (aconitate hydratase) K08M4_25920 PF00226 DnaJ domain K08M4_25920 PF05099 Tellurite resistance protein TerB K08M4_25930 PF03968 OstA-like protein K08M4_25930 PF04453 LPS transport system D K08M4_25940 PF09312 SurA N-terminal domain K08M4_25940 PF00639 PPIC-type PPIASE domain K08M4_25950 PF04166 Pyridoxal phosphate biosynthetic protein PdxA K08M4_25980 PF00149 Calcineurin-like phosphoesterase K08M4_25990 PF00186 Dihydrofolate reductase K08M4_26000 PF12821 Threonine/Serine exporter, ThrE K08M4_26010 PF06738 Putative threonine/serine exporter K08M4_26050 PF00348 Polyprenyl synthetase K08M4_26110 PF00582 Universal stress protein family K08M4_26120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M4_26120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K08M4_26130 PF00849 RNA pseudouridylate synthase K08M4_26160 PF02562 PhoH-like protein K08M4_26160 PF13638 PIN domain K08M4_26170 PF01523 Putative modulator of DNA gyrase K08M4_26180 PF00795 Carbon-nitrogen hydrolase K08M4_26190 PF13502 AsmA-like C-terminal region K08M4_26190 PF13116 Protein of unknown function K08M4_26200 PF10150 Ribonuclease E/G family K08M4_26200 PF00575 S1 RNA binding domain K08M4_26210 PF02545 Maf-like protein K08M4_26220 PF04093 rod shape-determining protein MreD K08M4_26230 PF04085 rod shape-determining protein MreC K08M4_26300 PF07963 Prokaryotic N-terminal methylation motif K08M4_26300 PF08334 Type II secretion system (T2SS), protein G K08M4_26310 PF07963 Prokaryotic N-terminal methylation motif K08M4_26310 PF00114 Pilin (bacterial filament) K08M4_26330 PF00482 Type II secretion system (T2SS), protein F K08M4_26340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain K08M4_26340 PF00437 Type II/IV secretion system protein K08M4_26360 PF13401 AAA domain K08M4_26360 PF01471 Putative peptidoglycan binding domain K08M4_26370 PF03958 Bacterial type II/III secretion system short domain K08M4_26370 PF00263 Bacterial type II and III secretion system protein K08M4_26410 PF00990 Diguanylate cyclase, GGDEF domain K08M4_26410 PF00563 EAL domain K08M4_26410 PF17157 Gammaproteobacterial periplasmic sensor domain K08M4_26420 PF00436 Single-strand binding protein family K08M4_26430 PF00196 Bacterial regulatory proteins, luxR family K08M4_26440 PF00483 Nucleotidyl transferase K08M4_26450 PF17755 UvrA DNA-binding domain K08M4_26450 PF17760 UvrA interaction domain K08M4_26450 PF00005 ABC transporter K08M4_26470 PF00266 Aminotransferase class-V K08M4_26480 PF01842 ACT domain K08M4_26480 PF00696 Amino acid kinase family K08M4_26490 PF02310 B12 binding domain K08M4_26490 PF02607 B12 binding domain K08M4_26490 PF02574 Homocysteine S-methyltransferase K08M4_26490 PF02965 Vitamin B12 dependent methionine synthase, activation domain K08M4_26490 PF00809 Pterin binding enzyme K08M4_26500 PF00999 Sodium/hydrogen exchanger family K08M4_26530 PF01695 IstB-like ATP binding protein K08M4_26540 PF13358 DDE superfamily endonuclease K08M4_26750 PF00667 FAD binding domain K08M4_26750 PF00258 Flavodoxin K08M4_26750 PF00175 Oxidoreductase NAD-binding domain K08M4_26780 PF09583 Phage shock protein G (Phageshock_PspG) K08M4_26790 PF01207 Dihydrouridine synthase (Dus) K08M4_26840 PF01609 Transposase DDE domain K08M4_26840 PF13006 Insertion element 4 transposase N-terminal K08M4_26860 PF01894 Uncharacterised protein family UPF0047 K08M4_26890 PF00772 DnaB-like helicase N terminal domain K08M4_26890 PF03796 DnaB-like helicase C terminal domain K08M4_26920 PF01084 Ribosomal protein S18 K08M4_26940 PF08032 RNA 2'-O ribose methyltransferase substrate binding K08M4_26940 PF00588 SpoU rRNA Methylase family K08M4_26950 PF00773 RNB domain K08M4_26950 PF08461 Ribonuclease R winged-helix domain K08M4_26950 PF08206 Ribonuclease B OB domain K08M4_26950 PF17876 Cold shock domain K08M4_26950 PF00575 S1 RNA binding domain K08M4_26960 PF01979 Amidohydrolase family K08M4_26970 PF08238 Sel1 repeat K08M4_26980 PF00709 Adenylosuccinate synthetase K08M4_26990 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) K08M4_27000 PF01145 SPFH domain / Band 7 family K08M4_27010 PF01145 SPFH domain / Band 7 family K08M4_27010 PF12221 Bacterial membrane protein N terminal K08M4_27020 PF13167 GTP-binding GTPase N-terminal K08M4_27020 PF16360 GTP-binding GTPase Middle Region K08M4_27020 PF01926 50S ribosome-binding GTPase K08M4_27050 PF01119 DNA mismatch repair protein, C-terminal domain K08M4_27050 PF08676 MutL C terminal dimerisation domain K08M4_27060 PF01520 N-acetylmuramoyl-L-alanine amidase K08M4_27070 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE K08M4_27080 PF08331 Domain of unknown function (DUF1730) K08M4_27240 PF00929 Exonuclease K08M4_27250 PF03193 RsgA GTPase K08M4_27260 PF02666 Phosphatidylserine decarboxylase K08M4_27270 PF03600 Citrate transporter K08M4_27270 PF02080 TrkA-C domain K08M4_27280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_27280 PF00672 HAMP domain K08M4_27310 PF02910 Fumarate reductase flavoprotein C-term K08M4_27310 PF00890 FAD binding domain K08M4_27320 PF13183 4Fe-4S dicluster domain K08M4_27320 PF13085 2Fe-2S iron-sulfur cluster binding domain K08M4_27340 PF02313 Fumarate reductase subunit D K08M4_27370 PF04055 Radical SAM superfamily K08M4_27380 PF02308 MgtC family K08M4_27390 PF00990 Diguanylate cyclase, GGDEF domain K08M4_27410 PF00118 TCP-1/cpn60 chaperonin family K08M4_27420 PF00166 Chaperonin 10 Kd subunit K08M4_27430 PF02706 Chain length determinant protein K08M4_27440 PF01554 MatE K08M4_27450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K08M4_27450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K08M4_27470 PF02397 Bacterial sugar transferase K08M4_27480 PF01370 NAD dependent epimerase/dehydratase family K08M4_27490 PF02719 Polysaccharide biosynthesis protein K08M4_27520 PF13737 Transposase DDE domain K08M4_27570 PF00535 Glycosyl transferase family 2 K08M4_27580 PF04138 GtrA-like protein K08M4_27590 PF00483 Nucleotidyl transferase K08M4_27620 PF00485 Phosphoribulokinase / Uridine kinase family K08M4_27630 PF01061 ABC-2 type transporter K08M4_27640 PF00005 ABC transporter K08M4_27700 PF00534 Glycosyl transferases group 1 K08M4_27700 PF13439 Glycosyltransferase Family 4 K08M4_27710 PF00581 Rhodanese-like domain K08M4_27730 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus K08M4_27730 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus K08M4_27740 PF06426 Serine acetyltransferase, N-terminal K08M4_27740 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_27750 PF01551 Peptidase family M23 K08M4_27760 PF08360 QacR-like protein, C-terminal region K08M4_27760 PF00440 Bacterial regulatory proteins, tetR family K08M4_27770 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase K08M4_27780 PF04321 RmlD substrate binding domain K08M4_27790 PF00483 Nucleotidyl transferase K08M4_27800 PF16363 GDP-mannose 4,6 dehydratase K08M4_27810 PF01370 NAD dependent epimerase/dehydratase family K08M4_27820 PF03279 Bacterial lipid A biosynthesis acyltransferase K08M4_27830 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_27870 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K08M4_27920 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) K08M4_27930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) K08M4_27940 PF05686 Glycosyl transferase family 90 K08M4_27970 PF00471 Ribosomal protein L33 K08M4_28000 PF04127 DNA / pantothenate metabolism flavoprotein K08M4_28000 PF02441 Flavoprotein K08M4_28020 PF03279 Bacterial lipid A biosynthesis acyltransferase K08M4_28050 PF08340 Domain of unknown function (DUF1732) K08M4_28050 PF03755 YicC-like family, N-terminal region K08M4_28060 PF00313 'Cold-shock' DNA-binding domain K08M4_28070 PF08220 DeoR-like helix-turn-helix domain K08M4_28070 PF00455 DeoR C terminal sensor domain K08M4_28100 PF00465 Iron-containing alcohol dehydrogenase K08M4_28110 PF13419 Haloacid dehalogenase-like hydrolase K08M4_28120 PF00923 Transaldolase/Fructose-6-phosphate aldolase K08M4_28130 PF00456 Transketolase, thiamine diphosphate binding domain K08M4_28130 PF02780 Transketolase, C-terminal domain K08M4_28130 PF02779 Transketolase, pyrimidine binding domain K08M4_28140 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) K08M4_28150 PF01546 Peptidase family M20/M25/M40 K08M4_28160 PF00367 phosphotransferase system, EIIB K08M4_28160 PF02378 Phosphotransferase system, EIIC K08M4_28190 PF00860 Permease family K08M4_28200 PF00625 Guanylate kinase K08M4_28220 PF13291 ACT domain K08M4_28220 PF02824 TGS domain K08M4_28220 PF04607 Region found in RelA / SpoT proteins K08M4_28230 PF00271 Helicase conserved C-terminal domain K08M4_28230 PF17191 RecG wedge domain K08M4_28230 PF00270 DEAD/DEAH box helicase K08M4_28240 PF00512 His Kinase A (phospho-acceptor) domain K08M4_28240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_28240 PF00672 HAMP domain K08M4_28250 PF00486 Transcriptional regulatory protein, C terminal K08M4_28250 PF00072 Response regulator receiver domain K08M4_28260 PF01272 Transcription elongation factor, GreA/GreB, C-term K08M4_28260 PF03449 Transcription elongation factor, N-terminal K08M4_28270 PF16921 Tex protein YqgF-like domain K08M4_28270 PF00575 S1 RNA binding domain K08M4_28270 PF17674 HHH domain K08M4_28270 PF09371 Tex-like protein N-terminal domain K08M4_28300 PF00156 Phosphoribosyl transferase domain K08M4_28310 PF01106 NifU-like domain K08M4_28310 PF01521 Iron-sulphur cluster biosynthesis K08M4_28320 PF00293 NUDIX domain K08M4_28330 PF00459 Inositol monophosphatase family K08M4_28340 PF01203 Type II secretion system (T2SS), protein N K08M4_28350 PF04612 Type II secretion system (T2SS), protein M K08M4_28360 PF12693 GspL periplasmic domain K08M4_28360 PF05134 Type II secretion system (T2SS), protein L K08M4_28370 PF03934 Type II secretion system (T2SS), protein K K08M4_28380 PF07963 Prokaryotic N-terminal methylation motif K08M4_28380 PF11612 Type II secretion system (T2SS), protein J K08M4_28390 PF07963 Prokaryotic N-terminal methylation motif K08M4_28390 PF02501 Type II secretion system (T2SS), protein I K08M4_28400 PF12019 Type II transport protein GspH K08M4_28410 PF08334 Type II secretion system (T2SS), protein G K08M4_28410 PF07963 Prokaryotic N-terminal methylation motif K08M4_28420 PF00482 Type II secretion system (T2SS), protein F K08M4_28430 PF00437 Type II/IV secretion system protein K08M4_28440 PF00263 Bacterial type II and III secretion system protein K08M4_28440 PF03958 Bacterial type II/III secretion system short domain K08M4_28450 PF11356 Type II secretion system protein C K08M4_28460 PF01479 S4 domain K08M4_28470 PF01430 Hsp33 protein K08M4_28500 PF00583 Acetyltransferase (GNAT) family K08M4_28500 PF09500 Putative thioesterase (yiiD_Cterm) K08M4_28540 PF00308 Bacterial dnaA protein K08M4_28540 PF08299 Bacterial dnaA protein helix-turn-helix K08M4_28560 PF03951 Glutamine synthetase, beta-Grasp domain K08M4_28560 PF00120 Glutamine synthetase, catalytic domain K08M4_28580 PF00989 PAS fold K08M4_28580 PF00512 His Kinase A (phospho-acceptor) domain K08M4_28580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_28590 PF00158 Sigma-54 interaction domain K08M4_28590 PF02954 Bacterial regulatory protein, Fis family K08M4_28590 PF00072 Response regulator receiver domain K08M4_28600 PF00990 Diguanylate cyclase, GGDEF domain K08M4_28600 PF00563 EAL domain K08M4_28600 PF03707 Bacterial signalling protein N terminal repeat K08M4_28610 PF04055 Radical SAM superfamily K08M4_28610 PF06969 HemN C-terminal domain K08M4_28620 PF10675 Protein of unknown function (DUF2489) K08M4_28650 PF00034 Cytochrome c K08M4_28660 PF01926 50S ribosome-binding GTPase K08M4_28680 PF01367 5'-3' exonuclease, C-terminal SAM fold K08M4_28680 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain K08M4_28680 PF01612 3'-5' exonuclease K08M4_28680 PF00476 DNA polymerase family A K08M4_28700 PF00490 Delta-aminolevulinic acid dehydratase K08M4_28710 PF01026 TatD related DNase K08M4_28720 PF00902 Sec-independent protein translocase protein (TatC) K08M4_28730 PF02416 mttA/Hcf106 family K08M4_28760 PF02036 SCP-2 sterol transfer family K08M4_28770 PF01209 ubiE/COQ5 methyltransferase family K08M4_28780 PF02646 RmuC family K08M4_28830 PF01420 Type I restriction modification DNA specificity domain K08M4_28840 PF02384 N-6 DNA Methylase K08M4_28980 PF00210 Ferritin-like domain K08M4_28990 PF00582 Universal stress protein family K08M4_29000 PF00892 EamA-like transporter family K08M4_29030 PF08448 PAS fold K08M4_29030 PF00990 Diguanylate cyclase, GGDEF domain K08M4_29030 PF00563 EAL domain K08M4_29040 PF01037 Lrp/AsnC ligand binding domain K08M4_29050 PF01432 Peptidase family M3 K08M4_29060 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ K08M4_29070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M4_29070 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_29100 PF03116 NQR2, RnfD, RnfE family K08M4_29130 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M4_29130 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_29150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_29160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_29160 PF00005 ABC transporter K08M4_29220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K08M4_29230 PF00580 UvrD/REP helicase N-terminal domain K08M4_29230 PF13361 UvrD-like helicase C-terminal domain K08M4_29240 PF00440 Bacterial regulatory proteins, tetR family K08M4_29250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_29260 PF00873 AcrB/AcrD/AcrF family K08M4_29270 PF04380 Membrane fusogenic activity K08M4_29290 PF03466 LysR substrate binding domain K08M4_29290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_29310 PF13358 DDE superfamily endonuclease K08M4_29400 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_29410 PF07369 Protein of unknown function (DUF1488) K08M4_29440 PF01300 Telomere recombination K08M4_29450 PF00731 AIR carboxylase K08M4_29460 PF02222 ATP-grasp domain K08M4_29460 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain K08M4_29470 PF01396 Topoisomerase DNA binding C4 zinc finger K08M4_29490 PF17782 DprA winged helix domain K08M4_29490 PF02481 DNA recombination-mediator protein A K08M4_29510 PF01327 Polypeptide deformylase K08M4_29530 PF01189 16S rRNA methyltransferase RsmB/F K08M4_29530 PF01029 NusB family K08M4_29540 PF02080 TrkA-C domain K08M4_29540 PF02254 TrkA-N domain K08M4_29550 PF02386 Cation transport protein K08M4_29570 PF03006 Haemolysin-III related K08M4_29580 PF07070 SpoOM protein K08M4_29600 PF06288 Protein of unknown function (DUF1040) K08M4_29620 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase K08M4_29620 PF12801 4Fe-4S binding domain K08M4_29620 PF13746 4Fe-4S dicluster domain K08M4_29630 PF01636 Phosphotransferase enzyme family K08M4_29640 PF01323 DSBA-like thioredoxin domain K08M4_29660 PF01078 Magnesium chelatase, subunit ChlI K08M4_29660 PF13335 Magnesium chelatase, subunit ChlI C-terminal K08M4_29670 PF00205 Thiamine pyrophosphate enzyme, central domain K08M4_29670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain K08M4_29670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain K08M4_29690 PF01063 Amino-transferase class IV K08M4_29710 PF00291 Pyridoxal-phosphate dependent enzyme K08M4_29710 PF00585 C-terminal regulatory domain of Threonine dehydratase K08M4_29720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_29720 PF03466 LysR substrate binding domain K08M4_29730 PF07690 Major Facilitator Superfamily K08M4_29740 PF12804 MobA-like NTP transferase domain K08M4_29740 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_29750 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain K08M4_29750 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain K08M4_29760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M4_29760 PF02874 ATP synthase alpha/beta family, beta-barrel domain K08M4_29770 PF00231 ATP synthase K08M4_29780 PF00306 ATP synthase alpha/beta chain, C terminal domain K08M4_29780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain K08M4_29780 PF02874 ATP synthase alpha/beta family, beta-barrel domain K08M4_29800 PF00430 ATP synthase B/B' CF(0) K08M4_29810 PF00137 ATP synthase subunit C K08M4_29820 PF00119 ATP synthase A chain K08M4_29830 PF03899 ATP synthase I chain K08M4_29840 PF17762 HTH domain found in ParB protein K08M4_29840 PF02195 ParB-like nuclease domain K08M4_29850 PF13614 AAA domain K08M4_29880 PF00258 Flavodoxin K08M4_29890 PF01926 50S ribosome-binding GTPase K08M4_29890 PF12631 MnmE helical domain K08M4_29890 PF10396 GTP-binding protein TrmE N-terminus K08M4_29910 PF00825 Ribonuclease P K08M4_29930 PF00005 ABC transporter K08M4_29940 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_29950 PF00497 Bacterial extracellular solute-binding proteins, family 3 K08M4_29960 PF18607 ParA helix turn helix domain K08M4_29960 PF13614 AAA domain K08M4_29970 PF08775 ParB family K08M4_29970 PF02195 ParB-like nuclease domain K08M4_29980 PF13718 GNAT acetyltransferase 2 K08M4_29980 PF05127 Helicase K08M4_30010 PF08019 Phosphoethanolamine transferase EptA/EptB K08M4_30010 PF00884 Sulfatase K08M4_30020 PF01544 CorA-like Mg2+ transporter protein K08M4_30090 PF00664 ABC transporter transmembrane region K08M4_30090 PF00005 ABC transporter K08M4_30100 PF04286 Protein of unknown function (DUF445) K08M4_30110 PF01037 Lrp/AsnC ligand binding domain K08M4_30140 PF00474 Sodium:solute symporter family K08M4_30160 PF00171 Aldehyde dehydrogenase family K08M4_30160 PF01619 Proline dehydrogenase K08M4_30160 PF14850 DNA-binding domain of Proline dehydrogenase K08M4_30160 PF18327 Proline utilization A proline dehydrogenase N-terminal domain K08M4_30170 PF12833 Helix-turn-helix domain K08M4_30190 PF03781 Sulfatase-modifying factor enzyme 1 K08M4_30200 PF00072 Response regulator receiver domain K08M4_30200 PF00196 Bacterial regulatory proteins, luxR family K08M4_30220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_30220 PF02743 Cache domain K08M4_30220 PF00512 His Kinase A (phospho-acceptor) domain K08M4_30230 PF00158 Sigma-54 interaction domain K08M4_30230 PF00072 Response regulator receiver domain K08M4_30230 PF02954 Bacterial regulatory protein, Fis family K08M4_30240 PF00529 HlyD membrane-fusion protein of T1SS K08M4_30270 PF00664 ABC transporter transmembrane region K08M4_30270 PF00005 ABC transporter K08M4_30270 PF03412 Peptidase C39 family K08M4_30280 PF06291 Bor protein K08M4_30290 PF00672 HAMP domain K08M4_30290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_30290 PF00512 His Kinase A (phospho-acceptor) domain K08M4_30300 PF00486 Transcriptional regulatory protein, C terminal K08M4_30300 PF00072 Response regulator receiver domain K08M4_30340 PF00732 GMC oxidoreductase K08M4_30340 PF05199 GMC oxidoreductase K08M4_30350 PF04069 Substrate binding domain of ABC-type glycine betaine transport system K08M4_30360 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_30370 PF00571 CBS domain K08M4_30370 PF00005 ABC transporter K08M4_30380 PF01047 MarR family K08M4_30410 PF00583 Acetyltransferase (GNAT) family K08M4_30420 PF00202 Aminotransferase class-III K08M4_30430 PF06339 Ectoine synthase K08M4_30440 PF13840 ACT domain K08M4_30440 PF00696 Amino acid kinase family K08M4_30450 PF01590 GAF domain K08M4_30450 PF02954 Bacterial regulatory protein, Fis family K08M4_30450 PF00158 Sigma-54 interaction domain K08M4_30500 PF02142 MGS-like domain K08M4_30500 PF00781 Diacylglycerol kinase catalytic domain K08M4_30510 PF00924 Mechanosensitive ion channel K08M4_30570 PF01594 AI-2E family transporter K08M4_30600 PF02600 Disulfide bond formation protein DsbB K08M4_30610 PF01081 KDPG and KHG aldolase K08M4_30620 PF00294 pfkB family carbohydrate kinase K08M4_30630 PF02378 Phosphotransferase system, EIIC K08M4_30630 PF00367 phosphotransferase system, EIIB K08M4_30640 PF13378 Enolase C-terminal domain-like K08M4_30640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K08M4_30660 PF07702 UTRA domain K08M4_30660 PF00392 Bacterial regulatory proteins, gntR family K08M4_30680 PF14602 Hexapeptide repeat of succinyl-transferase K08M4_30680 PF12464 Maltose acetyltransferase K08M4_30700 PF03466 LysR substrate binding domain K08M4_30700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_30710 PF12833 Helix-turn-helix domain K08M4_30710 PF02311 AraC-like ligand binding domain K08M4_30720 PF07690 Major Facilitator Superfamily K08M4_30750 PF02574 Homocysteine S-methyltransferase K08M4_30750 PF02965 Vitamin B12 dependent methionine synthase, activation domain K08M4_30750 PF02607 B12 binding domain K08M4_30750 PF02310 B12 binding domain K08M4_30750 PF00809 Pterin binding enzyme K08M4_30760 PF01548 Transposase K08M4_30760 PF02371 Transposase IS116/IS110/IS902 family K08M4_30790 PF14864 Alkyl sulfatase C-terminal K08M4_30790 PF00753 Metallo-beta-lactamase superfamily K08M4_30790 PF14863 Alkyl sulfatase dimerisation K08M4_30800 PF03466 LysR substrate binding domain K08M4_30800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_30820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M4_30830 PF00232 Glycosyl hydrolase family 1 K08M4_30840 PF00356 Bacterial regulatory proteins, lacI family K08M4_30850 PF12464 Maltose acetyltransferase K08M4_30850 PF14602 Hexapeptide repeat of succinyl-transferase K08M4_30860 PF07690 Major Facilitator Superfamily K08M4_30870 PF03466 LysR substrate binding domain K08M4_30870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_30890 PF01872 RibD C-terminal domain K08M4_30910 PF13091 PLD-like domain K08M4_30920 PF00881 Nitroreductase family K08M4_30940 PF04055 Radical SAM superfamily K08M4_30970 PF01266 FAD dependent oxidoreductase K08M4_30970 PF16901 C-terminal domain of alpha-glycerophosphate oxidase K08M4_30980 PF00455 DeoR C terminal sensor domain K08M4_30980 PF08220 DeoR-like helix-turn-helix domain K08M4_31000 PF00230 Major intrinsic protein K08M4_31010 PF00664 ABC transporter transmembrane region K08M4_31010 PF00005 ABC transporter K08M4_31010 PF03412 Peptidase C39 family K08M4_31030 PF00664 ABC transporter transmembrane region K08M4_31030 PF03412 Peptidase C39 family K08M4_31030 PF00005 ABC transporter K08M4_31050 PF02794 RTX toxin acyltransferase family K08M4_31060 PF12146 Serine aminopeptidase, S33 K08M4_31060 PF11647 Membrane Localization Domain K08M4_31060 PF11713 Peptidase C80 family K08M4_31060 PF07634 RtxA repeat K08M4_31060 PF16671 Actin cross-linking domain K08M4_31080 PF03466 LysR substrate binding domain K08M4_31080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_31090 PF01758 Sodium Bile acid symporter family K08M4_31120 PF00440 Bacterial regulatory proteins, tetR family K08M4_31160 PF00589 Phage integrase family K08M4_31160 PF13495 Phage integrase, N-terminal SAM-like domain K08M4_31180 PF06224 Winged helix DNA-binding domain K08M4_31230 PF00455 DeoR C terminal sensor domain K08M4_31230 PF08220 DeoR-like helix-turn-helix domain K08M4_31240 PF03611 PTS system sugar-specific permease component K08M4_31250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M4_31260 PF00596 Class II Aldolase and Adducin N-terminal domain K08M4_31280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family K08M4_31290 PF01261 Xylose isomerase-like TIM barrel K08M4_31310 PF02595 Glycerate kinase family K08M4_31320 PF06628 Catalase-related immune-responsive K08M4_31320 PF00199 Catalase K08M4_31330 PF01734 Patatin-like phospholipase K08M4_31340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain K08M4_31340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain K08M4_31360 PF00175 Oxidoreductase NAD-binding domain K08M4_31360 PF00970 Oxidoreductase FAD-binding domain K08M4_31370 PF01553 Acyltransferase K08M4_31380 PF04816 tRNA (adenine(22)-N(1))-methyltransferase K08M4_31400 PF00128 Alpha amylase, catalytic domain K08M4_31400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K08M4_31410 PF02264 LamB porin K08M4_31450 PF01547 Bacterial extracellular solute-binding protein K08M4_31460 PF16657 Maltogenic Amylase, C-terminal domain K08M4_31460 PF00128 Alpha amylase, catalytic domain K08M4_31530 PF16657 Maltogenic Amylase, C-terminal domain K08M4_31530 PF02903 Alpha amylase, N-terminal ig-like domain K08M4_31530 PF00128 Alpha amylase, catalytic domain K08M4_31540 PF11852 Domain of unknown function (DUF3372) K08M4_31540 PF03714 Bacterial pullanase-associated domain K08M4_31540 PF18494 Pullulanase Ins domain K08M4_31540 PF17967 Pullulanase N2 domain K08M4_31540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K08M4_31560 PF01810 LysE type translocator K08M4_31570 PF01037 Lrp/AsnC ligand binding domain K08M4_31580 PF03466 LysR substrate binding domain K08M4_31580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_31600 PF00375 Sodium:dicarboxylate symporter family K08M4_31610 PF03193 RsgA GTPase K08M4_31630 PF02630 SCO1/SenC K08M4_31660 PF00196 Bacterial regulatory proteins, luxR family K08M4_31660 PF17874 MalT-like TPR region K08M4_31670 PF00343 Carbohydrate phosphorylase K08M4_31680 PF02446 4-alpha-glucanotransferase K08M4_31690 PF00128 Alpha amylase, catalytic domain K08M4_31690 PF02806 Alpha amylase, C-terminal all-beta domain K08M4_31690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) K08M4_31710 PF12558 ATP-binding cassette cobalt transporter K08M4_31710 PF00005 ABC transporter K08M4_31730 PF00529 HlyD membrane-fusion protein of T1SS K08M4_31730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_31740 PF11742 Protein of unknown function (DUF3302) K08M4_31760 PF00990 Diguanylate cyclase, GGDEF domain K08M4_31790 PF01048 Phosphorylase superfamily K08M4_31800 PF03734 L,D-transpeptidase catalytic domain K08M4_31800 PF01476 LysM domain K08M4_31800 PF17969 L,D-transpeptidase C-terminal domain K08M4_31820 PF00271 Helicase conserved C-terminal domain K08M4_31820 PF00270 DEAD/DEAH box helicase K08M4_31830 PF00657 GDSL-like Lipase/Acylhydrolase K08M4_31840 PF00561 alpha/beta hydrolase fold K08M4_31850 PF03280 Proteobacterial lipase chaperone protein K08M4_31860 PF00672 HAMP domain K08M4_31860 PF17200 Single Cache domain 2 K08M4_31860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_31870 PF12849 PBP superfamily domain K08M4_31880 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_31890 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_31900 PF00005 ABC transporter K08M4_31910 PF00990 Diguanylate cyclase, GGDEF domain K08M4_31930 PF07584 Aerotolerance regulator N-terminal K08M4_31930 PF00092 von Willebrand factor type A domain K08M4_31940 PF00092 von Willebrand factor type A domain K08M4_31940 PF07584 Aerotolerance regulator N-terminal K08M4_31960 PF01882 Protein of unknown function DUF58 K08M4_31970 PF07726 ATPase family associated with various cellular activities (AAA) K08M4_31970 PF17863 AAA lid domain K08M4_31980 PF02743 Cache domain K08M4_31980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_31980 PF00672 HAMP domain K08M4_32000 PF13006 Insertion element 4 transposase N-terminal K08M4_32000 PF01609 Transposase DDE domain K08M4_32010 PF08402 TOBE domain K08M4_32010 PF00005 ABC transporter K08M4_32020 PF01547 Bacterial extracellular solute-binding protein K08M4_32030 PF14785 Maltose transport system permease protein MalF P2 domain K08M4_32030 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_32040 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_32080 PF01609 Transposase DDE domain K08M4_32080 PF13006 Insertion element 4 transposase N-terminal K08M4_32130 PF02355 Protein export membrane protein K08M4_32130 PF07549 SecD/SecF GG Motif K08M4_32130 PF13721 SecD export protein N-terminal TM region K08M4_32140 PF02355 Protein export membrane protein K08M4_32140 PF07549 SecD/SecF GG Motif K08M4_32160 PF00924 Mechanosensitive ion channel K08M4_32180 PF00873 AcrB/AcrD/AcrF family K08M4_32190 PF01914 MarC family integral membrane protein K08M4_32200 PF03448 MgtE intracellular N domain K08M4_32200 PF00571 CBS domain K08M4_32200 PF01769 Divalent cation transporter K08M4_32220 PF01699 Sodium/calcium exchanger protein K08M4_32230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_32230 PF03466 LysR substrate binding domain K08M4_32260 PF00005 ABC transporter K08M4_32280 PF00563 EAL domain K08M4_32280 PF00990 Diguanylate cyclase, GGDEF domain K08M4_32290 PF13188 PAS domain K08M4_32290 PF03707 Bacterial signalling protein N terminal repeat K08M4_32290 PF00990 Diguanylate cyclase, GGDEF domain K08M4_32290 PF00563 EAL domain K08M4_32330 PF00990 Diguanylate cyclase, GGDEF domain K08M4_32360 PF00072 Response regulator receiver domain K08M4_32360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_32400 PF00463 Isocitrate lyase family K08M4_32410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_32410 PF03466 LysR substrate binding domain K08M4_32420 PF01274 Malate synthase K08M4_32430 PF00171 Aldehyde dehydrogenase family K08M4_32450 PF02028 BCCT, betaine/carnitine/choline family transporter K08M4_32470 PF05661 Protein of unknown function (DUF808) K08M4_32500 PF03476 MOSC N-terminal beta barrel domain K08M4_32500 PF03473 MOSC domain K08M4_32500 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M4_32520 PF01467 Cytidylyltransferase-like K08M4_32600 PF00005 ABC transporter K08M4_32610 PF01032 FecCD transport family K08M4_32630 PF02472 Biopolymer transport protein ExbD/TolR K08M4_32640 PF01618 MotA/TolQ/ExbB proton channel family K08M4_32650 PF03544 Gram-negative bacterial TonB protein C-terminal K08M4_32660 PF04055 Radical SAM superfamily K08M4_32670 PF06228 Haem utilisation ChuX/HutX K08M4_32680 PF01243 Pyridoxamine 5'-phosphate oxidase K08M4_32690 PF01584 CheW-like domain K08M4_32690 PF00072 Response regulator receiver domain K08M4_32710 PF00128 Alpha amylase, catalytic domain K08M4_32720 PF00672 HAMP domain K08M4_32720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_32720 PF02743 Cache domain K08M4_32780 PF01551 Peptidase family M23 K08M4_32780 PF01476 LysM domain K08M4_32780 PF08525 Opacity-associated protein A N-terminal motif K08M4_32790 PF08448 PAS fold K08M4_32790 PF00563 EAL domain K08M4_32790 PF08447 PAS fold K08M4_32790 PF00990 Diguanylate cyclase, GGDEF domain K08M4_32800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_32800 PF03466 LysR substrate binding domain K08M4_32810 PF07690 Major Facilitator Superfamily K08M4_32840 PF00462 Glutaredoxin K08M4_32850 PF00892 EamA-like transporter family K08M4_32860 PF13609 Gram-negative porin K08M4_32890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M4_32900 PF03611 PTS system sugar-specific permease component K08M4_32910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K08M4_32940 PF07662 Na+ dependent nucleoside transporter C-terminus K08M4_32940 PF07670 Nucleoside recognition K08M4_32940 PF01773 Na+ dependent nucleoside transporter N-terminus K08M4_32980 PF00563 EAL domain K08M4_32980 PF00990 Diguanylate cyclase, GGDEF domain K08M4_32980 PF03707 Bacterial signalling protein N terminal repeat K08M4_32990 PF00271 Helicase conserved C-terminal domain K08M4_32990 PF00270 DEAD/DEAH box helicase K08M4_33020 PF00990 Diguanylate cyclase, GGDEF domain K08M4_33030 PF00313 'Cold-shock' DNA-binding domain K08M4_33040 PF07969 Amidohydrolase family K08M4_33050 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin K08M4_33090 PF12833 Helix-turn-helix domain K08M4_33100 PF03253 Urea transporter K08M4_33120 PF00155 Aminotransferase class I and II K08M4_33120 PF00392 Bacterial regulatory proteins, gntR family K08M4_33130 PF13520 Amino acid permease K08M4_33150 PF03466 LysR substrate binding domain K08M4_33150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_33160 PF01810 LysE type translocator K08M4_33200 PF00175 Oxidoreductase NAD-binding domain K08M4_33200 PF00111 2Fe-2S iron-sulfur cluster binding domain K08M4_33200 PF00970 Oxidoreductase FAD-binding domain K08M4_33210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain K08M4_33210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain K08M4_33220 PF00072 Response regulator receiver domain K08M4_33220 PF01627 Hpt domain K08M4_33220 PF00512 His Kinase A (phospho-acceptor) domain K08M4_33220 PF00672 HAMP domain K08M4_33220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_33220 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K08M4_33260 PF01541 GIY-YIG catalytic domain K08M4_33270 PF13407 Periplasmic binding protein domain K08M4_33280 PF00072 Response regulator receiver domain K08M4_33280 PF09308 LuxQ, periplasmic K08M4_33280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_33280 PF00512 His Kinase A (phospho-acceptor) domain K08M4_33310 PF00012 Hsp70 protein K08M4_33330 PF01557 Fumarylacetoacetate (FAA) hydrolase family K08M4_33340 PF01810 LysE type translocator K08M4_33350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K08M4_33350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K08M4_33350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K08M4_33350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K08M4_33360 PF00116 Cytochrome C oxidase subunit II, periplasmic domain K08M4_33360 PF02790 Cytochrome C oxidase subunit II, transmembrane domain K08M4_33370 PF00115 Cytochrome C and Quinol oxidase polypeptide I K08M4_33380 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 K08M4_33390 PF00510 Cytochrome c oxidase subunit III K08M4_33430 PF02628 Cytochrome oxidase assembly protein K08M4_33440 PF01040 UbiA prenyltransferase family K08M4_33470 PF12843 Putative quorum-sensing-regulated virulence factor K08M4_33490 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system K08M4_33500 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA K08M4_33560 PF00793 DAHP synthetase I family K08M4_33570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III K08M4_33570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II K08M4_33570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I K08M4_33570 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain K08M4_33580 PF01050 Mannose-6-phosphate isomerase K08M4_33580 PF00483 Nucleotidyl transferase K08M4_33590 PF00924 Mechanosensitive ion channel K08M4_33600 PF02080 TrkA-C domain K08M4_33600 PF02254 TrkA-N domain K08M4_33610 PF02386 Cation transport protein K08M4_33620 PF01625 Peptide methionine sulfoxide reductase K08M4_33620 PF01641 SelR domain K08M4_33630 PF02566 OsmC-like protein K08M4_33640 PF00691 OmpA family K08M4_33640 PF13488 Glycine zipper K08M4_33650 PF13419 Haloacid dehalogenase-like hydrolase K08M4_33670 PF00266 Aminotransferase class-V K08M4_33690 PF01266 FAD dependent oxidoreductase K08M4_33700 PF00005 ABC transporter K08M4_33710 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_33720 PF00392 Bacterial regulatory proteins, gntR family K08M4_33720 PF07702 UTRA domain K08M4_33740 PF03480 Bacterial extracellular solute-binding protein, family 7 K08M4_33760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component K08M4_33770 PF01202 Shikimate kinase K08M4_33780 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain K08M4_33780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M4_33790 PF03575 Peptidase family S51 K08M4_33800 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K08M4_33800 PF00356 Bacterial regulatory proteins, lacI family K08M4_33820 PF00854 POT family K08M4_33830 PF03315 Serine dehydratase beta chain K08M4_33830 PF03313 Serine dehydratase alpha chain K08M4_33890 PF00005 ABC transporter K08M4_33890 PF00664 ABC transporter transmembrane region K08M4_33900 PF00664 ABC transporter transmembrane region K08M4_33900 PF00005 ABC transporter K08M4_33920 PF08525 Opacity-associated protein A N-terminal motif K08M4_33920 PF01551 Peptidase family M23 K08M4_33920 PF01476 LysM domain K08M4_33930 PF01906 Putative heavy-metal-binding K08M4_33980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M4_33990 PF03466 LysR substrate binding domain K08M4_33990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_34010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_34030 PF12704 MacB-like periplasmic core domain K08M4_34030 PF00005 ABC transporter K08M4_34030 PF02687 FtsX-like permease family K08M4_34040 PF12704 MacB-like periplasmic core domain K08M4_34040 PF00005 ABC transporter K08M4_34040 PF02687 FtsX-like permease family K08M4_34050 PF00005 ABC transporter K08M4_34050 PF02687 FtsX-like permease family K08M4_34050 PF12704 MacB-like periplasmic core domain K08M4_34070 PF17153 Periplasmic sensor domain, extracellular K08M4_34070 PF00563 EAL domain K08M4_34080 PF00155 Aminotransferase class I and II K08M4_34100 PF00999 Sodium/hydrogen exchanger family K08M4_34100 PF02254 TrkA-N domain K08M4_34110 PF02525 Flavodoxin-like fold K08M4_34170 PF00465 Iron-containing alcohol dehydrogenase K08M4_34190 PF13419 Haloacid dehalogenase-like hydrolase K08M4_34200 PF00892 EamA-like transporter family K08M4_34210 PF00990 Diguanylate cyclase, GGDEF domain K08M4_34210 PF01590 GAF domain K08M4_34210 PF00563 EAL domain K08M4_34210 PF00360 Phytochrome region K08M4_34240 PF03466 LysR substrate binding domain K08M4_34240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_34260 PF01609 Transposase DDE domain K08M4_34260 PF13006 Insertion element 4 transposase N-terminal K08M4_34270 PF00801 PKD domain K08M4_34270 PF05547 Immune inhibitor A peptidase M6 K08M4_34300 PF01037 Lrp/AsnC ligand binding domain K08M4_34310 PF08447 PAS fold K08M4_34310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_34320 PF02779 Transketolase, pyrimidine binding domain K08M4_34320 PF02780 Transketolase, C-terminal domain K08M4_34320 PF00456 Transketolase, thiamine diphosphate binding domain K08M4_34330 PF00923 Transaldolase/Fructose-6-phosphate aldolase K08M4_34360 PF03466 LysR substrate binding domain K08M4_34360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_34400 PF04972 BON domain K08M4_34400 PF00263 Bacterial type II and III secretion system protein K08M4_34400 PF13629 Pilus formation protein N terminal region K08M4_34430 PF00437 Type II/IV secretion system protein K08M4_34510 PF00563 EAL domain K08M4_34510 PF00990 Diguanylate cyclase, GGDEF domain K08M4_34510 PF00360 Phytochrome region K08M4_34510 PF01590 GAF domain K08M4_34520 PF00581 Rhodanese-like domain K08M4_34560 PF00899 ThiF family K08M4_34570 PF03453 MoeA N-terminal region (domain I and II) K08M4_34570 PF00994 Probable molybdopterin binding domain K08M4_34570 PF03454 MoeA C-terminal region (domain IV) K08M4_34580 PF01227 GTP cyclohydrolase I K08M4_34590 PF03577 Peptidase family C69 K08M4_34610 PF07152 YaeQ protein K08M4_34620 PF00313 'Cold-shock' DNA-binding domain K08M4_34630 PF07995 Glucose / Sorbosone dehydrogenase K08M4_34640 PF07690 Major Facilitator Superfamily K08M4_34650 PF00005 ABC transporter K08M4_34670 PF12833 Helix-turn-helix domain K08M4_34680 PF07715 TonB-dependent Receptor Plug Domain K08M4_34680 PF00593 TonB dependent receptor K08M4_34700 PF01032 FecCD transport family K08M4_34710 PF00378 Enoyl-CoA hydratase/isomerase K08M4_34740 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_34740 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M4_34750 PF00132 Bacterial transferase hexapeptide (six repeats) K08M4_34770 PF00664 ABC transporter transmembrane region K08M4_34770 PF00005 ABC transporter K08M4_34780 PF00529 HlyD membrane-fusion protein of T1SS K08M4_34820 PF00529 HlyD membrane-fusion protein of T1SS K08M4_34820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_34830 PF00873 AcrB/AcrD/AcrF family K08M4_34900 PF03831 PhnA domain K08M4_34900 PF08274 PhnA Zinc-Ribbon K08M4_34930 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_34950 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_34960 PF00005 ABC transporter K08M4_34970 PF00465 Iron-containing alcohol dehydrogenase K08M4_34980 PF12833 Helix-turn-helix domain K08M4_34980 PF06719 AraC-type transcriptional regulator N-terminus K08M4_34990 PF01042 Endoribonuclease L-PSP K08M4_35060 PF13302 Acetyltransferase (GNAT) domain K08M4_35070 PF01042 Endoribonuclease L-PSP K08M4_35080 PF02028 BCCT, betaine/carnitine/choline family transporter K08M4_35090 PF06483 Chitinase C K08M4_35090 PF00704 Glycosyl hydrolases family 18 K08M4_35100 PF07694 5TMR of 5TMR-LYT K08M4_35100 PF00990 Diguanylate cyclase, GGDEF domain K08M4_35130 PF00768 D-alanyl-D-alanine carboxypeptidase K08M4_35130 PF07943 Penicillin-binding protein 5, C-terminal domain K08M4_35150 PF00849 RNA pseudouridylate synthase K08M4_35170 PF00107 Zinc-binding dehydrogenase K08M4_35170 PF16884 N-terminal domain of oxidoreductase K08M4_35180 PF16925 Tetracyclin repressor-like, C-terminal domain K08M4_35180 PF00440 Bacterial regulatory proteins, tetR family K08M4_35190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase K08M4_35190 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase K08M4_35210 PF00691 OmpA family K08M4_35210 PF04972 BON domain K08M4_35230 PF00158 Sigma-54 interaction domain K08M4_35230 PF01590 GAF domain K08M4_35240 PF00175 Oxidoreductase NAD-binding domain K08M4_35240 PF00042 Globin K08M4_35240 PF00970 Oxidoreductase FAD-binding domain K08M4_35260 PF00654 Voltage gated chloride channel K08M4_35270 PF02492 CobW/HypB/UreG, nucleotide-binding domain K08M4_35270 PF07683 Cobalamin synthesis protein cobW C-terminal domain K08M4_35280 PF00271 Helicase conserved C-terminal domain K08M4_35280 PF00270 DEAD/DEAH box helicase K08M4_35290 PF01810 LysE type translocator K08M4_35360 PF00072 Response regulator receiver domain K08M4_35360 PF00486 Transcriptional regulatory protein, C terminal K08M4_35370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_35370 PF00512 His Kinase A (phospho-acceptor) domain K08M4_35400 PF01037 Lrp/AsnC ligand binding domain K08M4_35440 PF01966 HD domain K08M4_35440 PF11871 Domain of unknown function (DUF3391) K08M4_35460 PF03264 NapC/NirT cytochrome c family, N-terminal region K08M4_35470 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) K08M4_35510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_35510 PF07730 Histidine kinase K08M4_35510 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term K08M4_35510 PF00672 HAMP domain K08M4_35520 PF00072 Response regulator receiver domain K08M4_35520 PF00196 Bacterial regulatory proteins, luxR family K08M4_35530 PF03606 C4-dicarboxylate anaerobic carrier K08M4_35570 PF01926 50S ribosome-binding GTPase K08M4_35580 PF00034 Cytochrome c K08M4_35590 PF00196 Bacterial regulatory proteins, luxR family K08M4_35610 PF13953 PapC C-terminal domain K08M4_35610 PF13954 PapC N-terminal domain K08M4_35610 PF00577 Outer membrane usher protein K08M4_35660 PF01212 Beta-eliminating lyase K08M4_35670 PF00293 NUDIX domain K08M4_35680 PF12592 Protein of unknown function (DUF3763) K08M4_35680 PF17868 AAA lid domain K08M4_35680 PF07728 AAA domain (dynein-related subfamily) K08M4_35690 PF05762 VWA domain containing CoxE-like protein K08M4_35710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_35710 PF00672 HAMP domain K08M4_35800 PF03150 Di-haem cytochrome c peroxidase K08M4_35810 PF00034 Cytochrome c K08M4_35810 PF03150 Di-haem cytochrome c peroxidase K08M4_35830 PF18465 Rieske 3Fe-4S K08M4_35830 PF01568 Molydopterin dinucleotide binding domain K08M4_35830 PF00384 Molybdopterin oxidoreductase K08M4_35860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K08M4_35860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M4_35860 PF18267 Rubredoxin NAD+ reductase C-terminal domain K08M4_35860 PF04324 BFD-like [2Fe-2S] binding domain K08M4_35860 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_35870 PF13806 Rieske-like [2Fe-2S] domain K08M4_35880 PF01226 Formate/nitrite transporter K08M4_35920 PF00486 Transcriptional regulatory protein, C terminal K08M4_35920 PF00072 Response regulator receiver domain K08M4_35930 PF00672 HAMP domain K08M4_35930 PF16527 Two-component sensor protein CpxA, periplasmic domain K08M4_35930 PF00512 His Kinase A (phospho-acceptor) domain K08M4_35930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_35940 PF00375 Sodium:dicarboxylate symporter family K08M4_35950 PF07715 TonB-dependent Receptor Plug Domain K08M4_35950 PF00593 TonB dependent receptor K08M4_35970 PF01618 MotA/TolQ/ExbB proton channel family K08M4_35980 PF01618 MotA/TolQ/ExbB proton channel family K08M4_35990 PF02472 Biopolymer transport protein ExbD/TolR K08M4_36110 PF01297 Zinc-uptake complex component A periplasmic K08M4_36140 PF00005 ABC transporter K08M4_36160 PF00950 ABC 3 transport family K08M4_36190 PF00384 Molybdopterin oxidoreductase K08M4_36190 PF01568 Molydopterin dinucleotide binding domain K08M4_36190 PF18465 Rieske 3Fe-4S K08M4_36230 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_36230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K08M4_36230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M4_36230 PF18267 Rubredoxin NAD+ reductase C-terminal domain K08M4_36230 PF04324 BFD-like [2Fe-2S] binding domain K08M4_36240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K08M4_36240 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_36240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M4_36240 PF18267 Rubredoxin NAD+ reductase C-terminal domain K08M4_36240 PF04324 BFD-like [2Fe-2S] binding domain K08M4_36250 PF18267 Rubredoxin NAD+ reductase C-terminal domain K08M4_36250 PF04324 BFD-like [2Fe-2S] binding domain K08M4_36250 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M4_36250 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K08M4_36250 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_36260 PF13806 Rieske-like [2Fe-2S] domain K08M4_36290 PF14824 Sirohaem biosynthesis protein central K08M4_36290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases K08M4_36290 PF10414 Sirohaem synthase dimerisation region K08M4_36340 PF00486 Transcriptional regulatory protein, C terminal K08M4_36340 PF00072 Response regulator receiver domain K08M4_36350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_36350 PF00512 His Kinase A (phospho-acceptor) domain K08M4_36350 PF16527 Two-component sensor protein CpxA, periplasmic domain K08M4_36350 PF00672 HAMP domain K08M4_36360 PF00375 Sodium:dicarboxylate symporter family K08M4_36370 PF07715 TonB-dependent Receptor Plug Domain K08M4_36370 PF00593 TonB dependent receptor K08M4_36390 PF01618 MotA/TolQ/ExbB proton channel family K08M4_36400 PF01618 MotA/TolQ/ExbB proton channel family K08M4_36410 PF02472 Biopolymer transport protein ExbD/TolR K08M4_36510 PF01297 Zinc-uptake complex component A periplasmic K08M4_36520 PF00005 ABC transporter K08M4_36530 PF00950 ABC 3 transport family K08M4_36560 PF11756 Nitrous oxide-stimulated promoter K08M4_36570 PF01554 MatE K08M4_36610 PF07690 Major Facilitator Superfamily K08M4_36630 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term K08M4_36630 PF12833 Helix-turn-helix domain K08M4_36640 PF00501 AMP-binding enzyme K08M4_36640 PF13193 AMP-binding enzyme C-terminal domain K08M4_36650 PF00732 GMC oxidoreductase K08M4_36650 PF05199 GMC oxidoreductase K08M4_36660 PF00085 Thioredoxin K08M4_36670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III K08M4_36670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal K08M4_36690 PF04143 Sulphur transport K08M4_36720 PF13597 Anaerobic ribonucleoside-triphosphate reductase K08M4_36720 PF03477 ATP cone domain K08M4_36740 PF01554 MatE K08M4_36750 PF12833 Helix-turn-helix domain K08M4_36760 PF00155 Aminotransferase class I and II K08M4_36770 PF08443 RimK-like ATP-grasp domain K08M4_36770 PF18030 RimK PreATP-grasp domain K08M4_36780 PF00005 ABC transporter K08M4_36780 PF12848 ABC transporter K08M4_36800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_36800 PF00672 HAMP domain K08M4_36800 PF02743 Cache domain K08M4_36830 PF07685 CobB/CobQ-like glutamine amidotransferase domain K08M4_36830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain K08M4_36850 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_36860 PF00005 ABC transporter K08M4_36860 PF03459 TOBE domain K08M4_36880 PF01590 GAF domain K08M4_36880 PF00563 EAL domain K08M4_36880 PF00360 Phytochrome region K08M4_36880 PF00990 Diguanylate cyclase, GGDEF domain K08M4_36900 PF00990 Diguanylate cyclase, GGDEF domain K08M4_36900 PF17158 Membrane-associated sensor, integral membrane domain K08M4_36930 PF05222 Alanine dehydrogenase/PNT, N-terminal domain K08M4_36930 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch K08M4_36930 PF01262 Alanine dehydrogenase/PNT, C-terminal domain K08M4_36940 PF02233 NAD(P) transhydrogenase beta subunit K08M4_36960 PF00072 Response regulator receiver domain K08M4_36960 PF00486 Transcriptional regulatory protein, C terminal K08M4_36990 PF03701 Uncharacterised protein family (UPF0181) K08M4_37000 PF08448 PAS fold K08M4_37000 PF00990 Diguanylate cyclase, GGDEF domain K08M4_37030 PF01253 Translation initiation factor SUI1 K08M4_37070 PF05036 Sporulation related domain K08M4_37080 PF13380 CoA binding domain K08M4_37080 PF13607 Succinyl-CoA ligase like flavodoxin domain K08M4_37080 PF00583 Acetyltransferase (GNAT) family K08M4_37090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_37090 PF03466 LysR substrate binding domain K08M4_37100 PF00593 TonB dependent receptor K08M4_37100 PF07715 TonB-dependent Receptor Plug Domain K08M4_37100 PF04886 PT repeat K08M4_37110 PF16363 GDP-mannose 4,6 dehydratase K08M4_37120 PF03746 LamB/YcsF family K08M4_37130 PF02682 Carboxyltransferase domain, subdomain C and D K08M4_37140 PF02626 Carboxyltransferase domain, subdomain A and B K08M4_37170 PF00005 ABC transporter K08M4_37180 PF13472 GDSL-like Lipase/Acylhydrolase family K08M4_37190 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase K08M4_37190 PF07055 Enoyl reductase FAD binding domain K08M4_37190 PF12241 Trans-2-enoyl-CoA reductase catalytic region K08M4_37200 PF00563 EAL domain K08M4_37200 PF00498 FHA domain K08M4_37200 PF00990 Diguanylate cyclase, GGDEF domain K08M4_37220 PF03717 Penicillin-binding Protein dimerisation domain K08M4_37220 PF00905 Penicillin binding protein transpeptidase domain K08M4_37230 PF00684 DnaJ central domain K08M4_37230 PF01556 DnaJ C terminal domain K08M4_37230 PF00226 DnaJ domain K08M4_37260 PF00892 EamA-like transporter family K08M4_37270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_37270 PF12793 Sugar transport-related sRNA regulator N-term K08M4_37290 PF03061 Thioesterase superfamily K08M4_37300 PF01435 Peptidase family M48 K08M4_37320 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) K08M4_37330 PF12262 Bacterial virulence factor lipase N-terminal K08M4_37360 PF03466 LysR substrate binding domain K08M4_37360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_37390 PF08543 Phosphomethylpyrimidine kinase K08M4_37400 PF00155 Aminotransferase class I and II K08M4_37410 PF06826 Predicted Permease Membrane Region K08M4_37410 PF02080 TrkA-C domain K08M4_37420 PF13737 Transposase DDE domain K08M4_37430 PF13737 Transposase DDE domain K08M4_37450 PF00529 HlyD membrane-fusion protein of T1SS K08M4_37450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_37490 PF13091 PLD-like domain K08M4_37500 PF17243 POTRA domain TamA domain 1 K08M4_37500 PF07244 Surface antigen variable number repeat K08M4_37500 PF01103 Surface antigen K08M4_37510 PF00270 DEAD/DEAH box helicase K08M4_37510 PF00271 Helicase conserved C-terminal domain K08M4_37540 PF03741 Integral membrane protein TerC family K08M4_37560 PF02872 5'-nucleotidase, C-terminal domain K08M4_37560 PF00149 Calcineurin-like phosphoesterase K08M4_37570 PF11398 Protein of unknown function (DUF2813) K08M4_37580 PF06496 Protein of unknown function (DUF1097) K08M4_37590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_37590 PF03466 LysR substrate binding domain K08M4_37600 PF01226 Formate/nitrite transporter K08M4_37610 PF04264 YceI-like domain K08M4_37620 PF01292 Prokaryotic cytochrome b561 K08M4_37650 PF12792 CSS motif domain associated with EAL K08M4_37650 PF00563 EAL domain K08M4_37660 PF00873 AcrB/AcrD/AcrF family K08M4_37670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_37670 PF00529 HlyD membrane-fusion protein of T1SS K08M4_37690 PF00529 HlyD membrane-fusion protein of T1SS K08M4_37690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_37710 PF00271 Helicase conserved C-terminal domain K08M4_37710 PF00270 DEAD/DEAH box helicase K08M4_37720 PF04336 Acyl carrier protein phosphodiesterase K08M4_37740 PF03222 Tryptophan/tyrosine permease family K08M4_37750 PF17200 Single Cache domain 2 K08M4_37750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_37750 PF00672 HAMP domain K08M4_37760 PF13419 Haloacid dehalogenase-like hydrolase K08M4_37770 PF11849 Domain of unknown function (DUF3369) K08M4_37800 PF00294 pfkB family carbohydrate kinase K08M4_37820 PF00990 Diguanylate cyclase, GGDEF domain K08M4_37820 PF17158 Membrane-associated sensor, integral membrane domain K08M4_37830 PF13419 Haloacid dehalogenase-like hydrolase K08M4_37840 PF00472 RF-1 domain K08M4_37880 PF08669 Glycine cleavage T-protein C-terminal barrel domain K08M4_37880 PF01571 Aminomethyltransferase folate-binding domain K08M4_37900 PF00464 Serine hydroxymethyltransferase K08M4_37920 PF02347 Glycine cleavage system P-protein K08M4_37960 PF02661 Fic/DOC family K08M4_37980 PF01548 Transposase K08M4_37980 PF02371 Transposase IS116/IS110/IS902 family K08M4_37990 PF13495 Phage integrase, N-terminal SAM-like domain K08M4_37990 PF00589 Phage integrase family K08M4_38020 PF04986 Putative transposase K08M4_38020 PF14319 Transposase zinc-binding domain K08M4_38030 PF13495 Phage integrase, N-terminal SAM-like domain K08M4_38030 PF00589 Phage integrase family K08M4_38040 PF01554 MatE K08M4_38050 PF01810 LysE type translocator K08M4_38080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M4_38110 PF00291 Pyridoxal-phosphate dependent enzyme K08M4_38120 PF07690 Major Facilitator Superfamily K08M4_38130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_38130 PF00672 HAMP domain K08M4_38130 PF00989 PAS fold K08M4_38130 PF00512 His Kinase A (phospho-acceptor) domain K08M4_38140 PF00072 Response regulator receiver domain K08M4_38140 PF00486 Transcriptional regulatory protein, C terminal K08M4_38170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_38170 PF03466 LysR substrate binding domain K08M4_38180 PF13533 Biotin-lipoyl like K08M4_38190 PF07690 Major Facilitator Superfamily K08M4_38220 PF04545 Sigma-70, region 4 K08M4_38220 PF00140 Sigma-70 factor, region 1.2 K08M4_38220 PF04542 Sigma-70 region 2 K08M4_38220 PF04539 Sigma-70 region 3 K08M4_38260 PF13533 Biotin-lipoyl like K08M4_38270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_38270 PF00512 His Kinase A (phospho-acceptor) domain K08M4_38270 PF09308 LuxQ, periplasmic K08M4_38270 PF00072 Response regulator receiver domain K08M4_38280 PF02321 Outer membrane efflux protein K08M4_38290 PF00664 ABC transporter transmembrane region K08M4_38290 PF00005 ABC transporter K08M4_38300 PF00005 ABC transporter K08M4_38320 PF00672 HAMP domain K08M4_38320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_38320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) K08M4_38320 PF00512 His Kinase A (phospho-acceptor) domain K08M4_38320 PF00072 Response regulator receiver domain K08M4_38320 PF01627 Hpt domain K08M4_38360 PF13186 Iron-sulfur cluster-binding domain K08M4_38360 PF04055 Radical SAM superfamily K08M4_38370 PF03781 Sulfatase-modifying factor enzyme 1 K08M4_38390 PF03466 LysR substrate binding domain K08M4_38390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_38420 PF13519 von Willebrand factor type A domain K08M4_38450 PF17863 AAA lid domain K08M4_38450 PF07726 ATPase family associated with various cellular activities (AAA) K08M4_38470 PF00884 Sulfatase K08M4_38480 PF00884 Sulfatase K08M4_38500 PF00583 Acetyltransferase (GNAT) family K08M4_38510 PF02469 Fasciclin domain K08M4_38540 PF02567 Phenazine biosynthesis-like protein K08M4_38550 PF01810 LysE type translocator K08M4_38570 PF00990 Diguanylate cyclase, GGDEF domain K08M4_38570 PF00563 EAL domain K08M4_38570 PF03707 Bacterial signalling protein N terminal repeat K08M4_38610 PF00115 Cytochrome C and Quinol oxidase polypeptide I K08M4_38630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III K08M4_38630 PF00034 Cytochrome c K08M4_38650 PF00561 alpha/beta hydrolase fold K08M4_38680 PF02028 BCCT, betaine/carnitine/choline family transporter K08M4_38700 PF00171 Aldehyde dehydrogenase family K08M4_38720 PF03466 LysR substrate binding domain K08M4_38720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_38740 PF00005 ABC transporter K08M4_38740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_38750 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M4_38750 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_38760 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_38770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_38800 PF05025 RbsD / FucU transport protein family K08M4_38810 PF00005 ABC transporter K08M4_38820 PF02653 Branched-chain amino acid transport system / permease component K08M4_38830 PF13407 Periplasmic binding protein domain K08M4_38840 PF00294 pfkB family carbohydrate kinase K08M4_38850 PF00356 Bacterial regulatory proteins, lacI family K08M4_38870 PF00990 Diguanylate cyclase, GGDEF domain K08M4_38870 PF03707 Bacterial signalling protein N terminal repeat K08M4_38870 PF00563 EAL domain K08M4_38910 PF01145 SPFH domain / Band 7 family K08M4_38960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain K08M4_38960 PF00384 Molybdopterin oxidoreductase K08M4_38960 PF01568 Molydopterin dinucleotide binding domain K08M4_38970 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_38970 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain K08M4_38970 PF18267 Rubredoxin NAD+ reductase C-terminal domain K08M4_38970 PF01077 Nitrite and sulphite reductase 4Fe-4S domain K08M4_38970 PF04324 BFD-like [2Fe-2S] binding domain K08M4_38990 PF07690 Major Facilitator Superfamily K08M4_39000 PF00069 Protein kinase domain K08M4_39000 PF03793 PASTA domain K08M4_39010 PF00356 Bacterial regulatory proteins, lacI family K08M4_39010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K08M4_39020 PF00381 PTS HPr component phosphorylation site K08M4_39020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M4_39030 PF00294 pfkB family carbohydrate kinase K08M4_39040 PF02378 Phosphotransferase system, EIIC K08M4_39040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K08M4_39060 PF02798 Glutathione S-transferase, N-terminal domain K08M4_39070 PF01844 HNH endonuclease K08M4_39110 PF18081 Fanconi anemia-associated nuclease SAP domain K08M4_39110 PF08774 VRR-NUC domain K08M4_39140 PF00672 HAMP domain K08M4_39140 PF17149 Periplasmic sensor domain found in signal transduction proteins K08M4_39140 PF01627 Hpt domain K08M4_39140 PF00512 His Kinase A (phospho-acceptor) domain K08M4_39140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_39140 PF00072 Response regulator receiver domain K08M4_39150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family K08M4_39180 PF12462 DNA helicase IV / RNA helicase N terminal K08M4_39180 PF00580 UvrD/REP helicase N-terminal domain K08M4_39180 PF13361 UvrD-like helicase C-terminal domain K08M4_39190 PF12805 FUSC-like inner membrane protein yccS K08M4_39230 PF03466 LysR substrate binding domain K08M4_39230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_39240 PF04055 Radical SAM superfamily K08M4_39250 PF11230 Protein of unknown function (DUF3029) K08M4_39260 PF13006 Insertion element 4 transposase N-terminal K08M4_39260 PF01609 Transposase DDE domain K08M4_39270 PF07690 Major Facilitator Superfamily K08M4_39280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_39280 PF03466 LysR substrate binding domain K08M4_39290 PF00072 Response regulator receiver domain K08M4_39290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_39290 PF09308 LuxQ, periplasmic K08M4_39290 PF00512 His Kinase A (phospho-acceptor) domain K08M4_39300 PF00072 Response regulator receiver domain K08M4_39310 PF00005 ABC transporter K08M4_39320 PF01032 FecCD transport family K08M4_39330 PF01032 FecCD transport family K08M4_39340 PF01497 Periplasmic binding protein K08M4_39400 PF01594 AI-2E family transporter K08M4_39420 PF13533 Biotin-lipoyl like K08M4_39440 PF00990 Diguanylate cyclase, GGDEF domain K08M4_39440 PF07694 5TMR of 5TMR-LYT K08M4_39460 PF03466 LysR substrate binding domain K08M4_39460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_39480 PF02581 Thiamine monophosphate synthase K08M4_39490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_39490 PF00672 HAMP domain K08M4_39490 PF02743 Cache domain K08M4_39510 PF03070 TENA/THI-4/PQQC family K08M4_39520 PF09084 NMT1/THI5 like K08M4_39530 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_39540 PF00005 ABC transporter K08M4_39550 PF08543 Phosphomethylpyrimidine kinase K08M4_39560 PF00892 EamA-like transporter family K08M4_39610 PF13417 Glutathione S-transferase, N-terminal domain K08M4_39610 PF00043 Glutathione S-transferase, C-terminal domain K08M4_39630 PF00990 Diguanylate cyclase, GGDEF domain K08M4_39640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) K08M4_39660 PF13358 DDE superfamily endonuclease K08M4_39730 PF09669 Phage regulatory protein Rha (Phage_pRha) K08M4_39730 PF10549 ORF11CD3 domain K08M4_40010 PF05840 Bacteriophage replication gene A protein (GPA) K08M4_40080 PF06892 Phage regulatory protein CII (CP76) K08M4_40120 PF07669 Eco57I restriction-modification methylase K08M4_40130 PF17728 BsuBI/PstI restriction endonuclease HTH domain K08M4_40130 PF06616 BsuBI/PstI restriction endonuclease domain K08M4_40160 PF00589 Phage integrase family K08M4_40190 PF00196 Bacterial regulatory proteins, luxR family K08M4_40190 PF00072 Response regulator receiver domain K08M4_40210 PF01554 MatE K08M4_40220 PF03466 LysR substrate binding domain K08M4_40220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_40230 PF00892 EamA-like transporter family K08M4_40270 PF08240 Alcohol dehydrogenase GroES-like domain K08M4_40270 PF00107 Zinc-binding dehydrogenase K08M4_40300 PF00005 ABC transporter K08M4_40310 PF01032 FecCD transport family K08M4_40320 PF01032 FecCD transport family K08M4_40330 PF01497 Periplasmic binding protein K08M4_40340 PF00593 TonB dependent receptor K08M4_40340 PF07660 Secretin and TonB N terminus short domain K08M4_40340 PF07715 TonB-dependent Receptor Plug Domain K08M4_40350 PF00593 TonB dependent receptor K08M4_40350 PF07715 TonB-dependent Receptor Plug Domain K08M4_40370 PF00871 Acetokinase family K08M4_40380 PF00271 Helicase conserved C-terminal domain K08M4_40380 PF00270 DEAD/DEAH box helicase K08M4_40380 PF03880 DbpA RNA binding domain K08M4_40400 PF12833 Helix-turn-helix domain K08M4_40420 PF12849 PBP superfamily domain K08M4_40430 PF01575 MaoC like domain K08M4_40440 PF00873 AcrB/AcrD/AcrF family K08M4_40450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion K08M4_40460 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K08M4_40510 PF00248 Aldo/keto reductase family K08M4_40520 PF00588 SpoU rRNA Methylase family K08M4_40520 PF08032 RNA 2'-O ribose methyltransferase substrate binding K08M4_40530 PF11953 Domain of unknown function (DUF3470) K08M4_40530 PF00037 4Fe-4S binding domain K08M4_40570 PF00271 Helicase conserved C-terminal domain K08M4_40570 PF00270 DEAD/DEAH box helicase K08M4_40590 PF00929 Exonuclease K08M4_40590 PF11490 DNA polymerase III polC-type N-terminus II K08M4_40590 PF07733 Bacterial DNA polymerase III alpha NTPase domain K08M4_40590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain K08M4_40590 PF14579 Helix-hairpin-helix motif K08M4_40590 PF02811 PHP domain K08M4_40620 PF03880 DbpA RNA binding domain K08M4_40620 PF00270 DEAD/DEAH box helicase K08M4_40620 PF00271 Helicase conserved C-terminal domain K08M4_40630 PF00248 Aldo/keto reductase family K08M4_40680 PF00924 Mechanosensitive ion channel K08M4_40680 PF05552 Conserved TM helix K08M4_40700 PF02683 Cytochrome C biogenesis protein transmembrane region K08M4_40700 PF11412 Disulphide bond corrector protein DsbC K08M4_40710 PF00085 Thioredoxin K08M4_40720 PF01966 HD domain K08M4_40730 PF13302 Acetyltransferase (GNAT) domain K08M4_40740 PF00512 His Kinase A (phospho-acceptor) domain K08M4_40740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_40740 PF00672 HAMP domain K08M4_40740 PF16527 Two-component sensor protein CpxA, periplasmic domain K08M4_40750 PF00486 Transcriptional regulatory protein, C terminal K08M4_40750 PF00072 Response regulator receiver domain K08M4_40770 PF13426 PAS domain K08M4_40770 PF00990 Diguanylate cyclase, GGDEF domain K08M4_40770 PF00563 EAL domain K08M4_40790 PF00005 ABC transporter K08M4_40840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region K08M4_40840 PF01872 RibD C-terminal domain K08M4_40860 PF00849 RNA pseudouridylate synthase K08M4_40920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_40940 PF08443 RimK-like ATP-grasp domain K08M4_40940 PF18030 RimK PreATP-grasp domain K08M4_40970 PF13416 Bacterial extracellular solute-binding protein K08M4_40980 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_40990 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_41000 PF00005 ABC transporter K08M4_41000 PF17912 MalK OB fold domain K08M4_41010 PF03009 Glycerophosphoryl diester phosphodiesterase family K08M4_41060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold K08M4_41080 PF13417 Glutathione S-transferase, N-terminal domain K08M4_41080 PF04399 Glutaredoxin 2, C terminal domain K08M4_41120 PF00391 PEP-utilising enzyme, mobile domain K08M4_41120 PF02896 PEP-utilising enzyme, TIM barrel domain K08M4_41120 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain K08M4_41130 PF01554 MatE K08M4_41140 PF08348 YheO-like PAS domain K08M4_41140 PF13309 HTH domain K08M4_41150 PF01042 Endoribonuclease L-PSP K08M4_41160 PF00375 Sodium:dicarboxylate symporter family K08M4_41170 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_41170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain K08M4_41220 PF13358 DDE superfamily endonuclease K08M4_41350 PF00535 Glycosyl transferase family 2 K08M4_41390 PF04542 Sigma-70 region 2 K08M4_41390 PF08281 Sigma-70, region 4 K08M4_41400 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 K08M4_41430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_41430 PF00672 HAMP domain K08M4_41430 PF02743 Cache domain K08M4_41460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_41470 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_41480 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_41480 PF12911 N-terminal TM domain of oligopeptide transport permease C K08M4_41490 PF00005 ABC transporter K08M4_41490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_41520 PF03466 LysR substrate binding domain K08M4_41520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_41530 PF00106 short chain dehydrogenase K08M4_41550 PF16868 NMT1-like family K08M4_41560 PF00483 Nucleotidyl transferase K08M4_41590 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_41600 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_41610 PF00005 ABC transporter K08M4_41650 PF00158 Sigma-54 interaction domain K08M4_41650 PF00072 Response regulator receiver domain K08M4_41650 PF02954 Bacterial regulatory protein, Fis family K08M4_41660 PF02743 Cache domain K08M4_41660 PF00512 His Kinase A (phospho-acceptor) domain K08M4_41660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_41670 PF02311 AraC-like ligand binding domain K08M4_41670 PF12833 Helix-turn-helix domain K08M4_41690 PF13378 Enolase C-terminal domain-like K08M4_41690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain K08M4_41710 PF03466 LysR substrate binding domain K08M4_41710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_41730 PF02903 Alpha amylase, N-terminal ig-like domain K08M4_41730 PF00128 Alpha amylase, catalytic domain K08M4_41750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_41750 PF00672 HAMP domain K08M4_41750 PF17200 Single Cache domain 2 K08M4_41760 PF03466 LysR substrate binding domain K08M4_41760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_41770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_41770 PF00672 HAMP domain K08M4_41770 PF02743 Cache domain K08M4_41800 PF00155 Aminotransferase class I and II K08M4_41800 PF00392 Bacterial regulatory proteins, gntR family K08M4_41810 PF03222 Tryptophan/tyrosine permease family K08M4_41820 PF01047 MarR family K08M4_41830 PF02566 OsmC-like protein K08M4_41840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_41840 PF00672 HAMP domain K08M4_41840 PF12729 Four helix bundle sensory module for signal transduction K08M4_41860 PF00440 Bacterial regulatory proteins, tetR family K08M4_41880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K08M4_41900 PF12833 Helix-turn-helix domain K08M4_41910 PF02378 Phosphotransferase system, EIIC K08M4_41910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 K08M4_41910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit K08M4_41920 PF01238 Phosphomannose isomerase type I K08M4_41950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle K08M4_41960 PF00246 Zinc carboxypeptidase K08M4_41980 PF00912 Transglycosylase K08M4_41990 PF08240 Alcohol dehydrogenase GroES-like domain K08M4_41990 PF00107 Zinc-binding dehydrogenase K08M4_42000 PF00756 Putative esterase K08M4_42020 PF13344 Haloacid dehalogenase-like hydrolase K08M4_42020 PF00293 NUDIX domain K08M4_42030 PF00171 Aldehyde dehydrogenase family K08M4_42040 PF00158 Sigma-54 interaction domain K08M4_42040 PF02954 Bacterial regulatory protein, Fis family K08M4_42040 PF01590 GAF domain K08M4_42050 PF00672 HAMP domain K08M4_42050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain K08M4_42060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_42060 PF03466 LysR substrate binding domain K08M4_42070 PF02798 Glutathione S-transferase, N-terminal domain K08M4_42070 PF00043 Glutathione S-transferase, C-terminal domain K08M4_42140 PF03605 Anaerobic c4-dicarboxylate membrane transporter K08M4_42150 PF13419 Haloacid dehalogenase-like hydrolase K08M4_42160 PF01966 HD domain K08M4_42250 PF01047 MarR family K08M4_42260 PF00892 EamA-like transporter family K08M4_42270 PF00892 EamA-like transporter family K08M4_42310 PF07238 PilZ domain K08M4_42310 PF12945 Flagellar protein YcgR K08M4_42320 PF13654 AAA domain K08M4_42320 PF05362 Lon protease (S16) C-terminal proteolytic domain K08M4_42340 PF00005 ABC transporter K08M4_42340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_42370 PF00356 Bacterial regulatory proteins, lacI family K08M4_42390 PF01263 Aldose 1-epimerase K08M4_42400 PF06165 Glycosyltransferase family 36 K08M4_42400 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain K08M4_42410 PF03459 TOBE domain K08M4_42410 PF17912 MalK OB fold domain K08M4_42410 PF00005 ABC transporter K08M4_42420 PF00232 Glycosyl hydrolase family 1 K08M4_42430 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_42440 PF00528 Binding-protein-dependent transport system inner membrane component K08M4_42460 PF00356 Bacterial regulatory proteins, lacI family K08M4_42480 PF00326 Prolyl oligopeptidase family K08M4_42480 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain K08M4_42490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_42490 PF03466 LysR substrate binding domain K08M4_42500 PF02652 L-lactate permease K08M4_42510 PF01070 FMN-dependent dehydrogenase K08M4_42540 PF01497 Periplasmic binding protein K08M4_42540 PF12833 Helix-turn-helix domain K08M4_42550 PF00155 Aminotransferase class I and II K08M4_42590 PF01238 Phosphomannose isomerase type I K08M4_42600 PF07690 Major Facilitator Superfamily K08M4_42610 PF05231 MASE1 K08M4_42610 PF07730 Histidine kinase K08M4_42610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_42620 PF00196 Bacterial regulatory proteins, luxR family K08M4_42620 PF00072 Response regulator receiver domain K08M4_42630 PF07690 Major Facilitator Superfamily K08M4_42660 PF03707 Bacterial signalling protein N terminal repeat K08M4_42660 PF00563 EAL domain K08M4_42660 PF00990 Diguanylate cyclase, GGDEF domain K08M4_42680 PF02678 Pirin K08M4_42680 PF05726 Pirin C-terminal cupin domain K08M4_42710 PF08329 Chitinase A, N-terminal domain K08M4_42710 PF00704 Glycosyl hydrolases family 18 K08M4_42720 PF12697 Alpha/beta hydrolase family K08M4_42760 PF12833 Helix-turn-helix domain K08M4_42760 PF12852 Cupin K08M4_42800 PF01124 MAPEG family K08M4_42810 PF07670 Nucleoside recognition K08M4_42820 PF07670 Nucleoside recognition K08M4_42830 PF03600 Citrate transporter K08M4_42850 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain K08M4_42850 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain K08M4_42860 PF06029 AlkA N-terminal domain K08M4_42860 PF00730 HhH-GPD superfamily base excision DNA repair protein K08M4_42880 PF03466 LysR substrate binding domain K08M4_42880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_42930 PF00881 Nitroreductase family K08M4_42940 PF00258 Flavodoxin K08M4_42940 PF00753 Metallo-beta-lactamase superfamily K08M4_42940 PF00301 Rubredoxin K08M4_42950 PF18113 Rubredoxin binding C-terminal domain K08M4_42950 PF07992 Pyridine nucleotide-disulphide oxidoreductase K08M4_42960 PF03616 Sodium/glutamate symporter K08M4_42970 PF10928 Protein of unknown function (DUF2810) K08M4_42980 PF01757 Acyltransferase family K08M4_43010 PF04545 Sigma-70, region 4 K08M4_43010 PF04542 Sigma-70 region 2 K08M4_43020 PF12973 ChrR Cupin-like domain K08M4_43040 PF03441 FAD binding domain of DNA photolyase K08M4_43040 PF00875 DNA photolyase K08M4_43060 PF00106 short chain dehydrogenase K08M4_43070 PF01593 Flavin containing amine oxidoreductase K08M4_43140 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) K08M4_43180 PF00367 phosphotransferase system, EIIB K08M4_43180 PF02378 Phosphotransferase system, EIIC K08M4_43210 PF00486 Transcriptional regulatory protein, C terminal K08M4_43210 PF00072 Response regulator receiver domain K08M4_43220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_43220 PF03466 LysR substrate binding domain K08M4_43240 PF07690 Major Facilitator Superfamily K08M4_43250 PF00724 NADH:flavin oxidoreductase / NADH oxidase family K08M4_43280 PF02355 Protein export membrane protein K08M4_43280 PF07549 SecD/SecF GG Motif K08M4_43290 PF13721 SecD export protein N-terminal TM region K08M4_43290 PF07549 SecD/SecF GG Motif K08M4_43290 PF02355 Protein export membrane protein K08M4_43310 PF05193 Peptidase M16 inactive domain K08M4_43310 PF00675 Insulinase (Peptidase family M16) K08M4_43320 PF00675 Insulinase (Peptidase family M16) K08M4_43320 PF05193 Peptidase M16 inactive domain K08M4_43330 PF04397 LytTr DNA-binding domain K08M4_43330 PF00072 Response regulator receiver domain K08M4_43340 PF06580 Histidine kinase K08M4_43340 PF07694 5TMR of 5TMR-LYT K08M4_43340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_43370 PF12704 MacB-like periplasmic core domain K08M4_43370 PF02687 FtsX-like permease family K08M4_43380 PF00005 ABC transporter K08M4_43410 PF03466 LysR substrate binding domain K08M4_43410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family K08M4_43430 PF00144 Beta-lactamase K08M4_43460 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase K08M4_43460 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase K08M4_43490 PF01329 Pterin 4 alpha carbinolamine dehydratase K08M4_43500 PF00351 Biopterin-dependent aromatic amino acid hydroxylase K08M4_43510 PF00501 AMP-binding enzyme K08M4_43510 PF13193 AMP-binding enzyme C-terminal domain K08M4_43520 PF00696 Amino acid kinase family K08M4_43530 PF02798 Glutathione S-transferase, N-terminal domain K08M4_43530 PF14497 Glutathione S-transferase, C-terminal domain K08M4_43550 PF04209 homogentisate 1,2-dioxygenase K08M4_43560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily K08M4_43590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase K08M4_43590 PF00512 His Kinase A (phospho-acceptor) domain K08M4_43590 PF01627 Hpt domain K08M4_43590 PF00072 Response regulator receiver domain K08M4_43590 PF00672 HAMP domain K08M4_43590 PF17149 Periplasmic sensor domain found in signal transduction proteins K08M4_43610 PF00925 GTP cyclohydrolase II K08M4_43610 PF08719 Domain of unknown function (DUF1768) K08M4_43630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region K08M4_43630 PF00005 ABC transporter K08M4_43640 PF00005 ABC transporter K08M4_43640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region