locus-tag class description LN249_00005 PF00308 Bacterial dnaA protein LN249_00005 PF08299 Bacterial dnaA protein helix-turn-helix LN249_00005 PF11638 DnaA N-terminal domain LN249_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LN249_00010 PF02767 DNA polymerase III beta subunit, central domain LN249_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LN249_00015 PF02463 RecF/RecN/SMC N terminal domain LN249_00020 PF01751 Toprim domain LN249_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LN249_00020 PF00204 DNA gyrase B LN249_00020 PF18053 DNA gyrase B subunit insert domain LN249_00030 PF00011 Hsp20/alpha crystallin family LN249_00035 PF00155 Aminotransferase class I and II LN249_00040 PF00128 Alpha amylase, catalytic domain LN249_00045 PF02092 Glycyl-tRNA synthetase beta subunit LN249_00045 PF05746 DALR anticodon binding domain LN249_00050 PF02091 Glycyl-tRNA synthetase alpha subunit LN249_00055 PF01169 Uncharacterized protein family UPF0016 LN249_00065 PF01206 Sulfurtransferase TusA LN249_00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_00075 PF03466 LysR substrate binding domain LN249_00080 PF08240 Alcohol dehydrogenase GroES-like domain LN249_00080 PF00107 Zinc-binding dehydrogenase LN249_00085 PF00108 Thiolase, N-terminal domain LN249_00085 PF02803 Thiolase, C-terminal domain LN249_00090 PF00378 Enoyl-CoA hydratase/isomerase LN249_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LN249_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LN249_00095 PF09186 Domain of unknown function (DUF1949) LN249_00095 PF01205 Uncharacterized protein family UPF0029 LN249_00100 PF02386 Cation transport protein LN249_00105 PF12724 Flavodoxin domain LN249_00140 PF03466 LysR substrate binding domain LN249_00140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_00145 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LN249_00145 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LN249_00150 PF04380 Membrane fusogenic activity LN249_00155 PF00873 AcrB/AcrD/AcrF family LN249_00160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_00165 PF16295 Tetracyclin repressor-like, C-terminal domain LN249_00165 PF00440 Bacterial regulatory proteins, tetR family LN249_00170 PF00580 UvrD/REP helicase N-terminal domain LN249_00170 PF13361 UvrD-like helicase C-terminal domain LN249_00175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LN249_00205 PF13419 Haloacid dehalogenase-like hydrolase LN249_00210 PF00005 ABC transporter LN249_00210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_00215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_00220 PF00528 Binding-protein-dependent transport system inner membrane component LN249_00225 PF00528 Binding-protein-dependent transport system inner membrane component LN249_00225 PF12911 N-terminal TM domain of oligopeptide transport permease C LN249_00265 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LN249_00265 PF00356 Bacterial regulatory proteins, lacI family LN249_00270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_00270 PF03466 LysR substrate binding domain LN249_00275 PF00893 Small Multidrug Resistance protein LN249_00280 PF00893 Small Multidrug Resistance protein LN249_00285 PF00920 Dehydratase family LN249_00290 PF01202 Shikimate kinase LN249_00295 PF02447 GntP family permease LN249_00300 PF01081 KDPG and KHG aldolase LN249_00305 PF01048 Phosphorylase superfamily LN249_00310 PF03466 LysR substrate binding domain LN249_00310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_00315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LN249_00315 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_00320 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LN249_00325 PF01432 Peptidase family M3 LN249_00330 PF01037 Lrp/AsnC ligand binding domain LN249_00335 PF00563 EAL domain LN249_00335 PF00990 Diguanylate cyclase, GGDEF domain LN249_00335 PF08448 PAS fold LN249_00340 PF04445 Putative SAM-dependent methyltransferase LN249_00350 PF00892 EamA-like transporter family LN249_00355 PF00582 Universal stress protein family LN249_00360 PF00210 Ferritin-like domain LN249_00365 PF10625 Universal stress protein B (UspB) LN249_00375 PF08722 TnsA endonuclease N terminal LN249_00375 PF08721 TnsA endonuclease C terminal LN249_00380 PF00665 Integrase core domain LN249_00385 PF11426 Tn7 transposition regulator TnsC LN249_00385 PF13401 AAA domain LN249_00410 PF00313 'Cold-shock' DNA-binding domain LN249_00415 PF00330 Aconitase family (aconitate hydratase) LN249_00415 PF00694 Aconitase C-terminal domain LN249_00420 PF06965 Na+/H+ antiporter 1 LN249_00430 PF12221 Bacterial membrane protein N terminal LN249_00430 PF01145 SPFH domain / Band 7 family LN249_00440 PF00144 Beta-lactamase LN249_00470 PF01590 GAF domain LN249_00470 PF02954 Bacterial regulatory protein, Fis family LN249_00470 PF00158 Sigma-54 interaction domain LN249_00495 PF00781 Diacylglycerol kinase catalytic domain LN249_00525 PF01594 AI-2E family transporter LN249_00530 PF00563 EAL domain LN249_00530 PF03707 Bacterial signalling protein N terminal repeat LN249_00530 PF00990 Diguanylate cyclase, GGDEF domain LN249_00540 PF02646 RmuC family LN249_00545 PF01209 ubiE/COQ5 methyltransferase family LN249_00550 PF02036 SCP-2 sterol transfer family LN249_00555 PF03109 ABC1 family LN249_00560 PF02416 mttA/Hcf106 family LN249_00565 PF02416 mttA/Hcf106 family LN249_00570 PF00902 Sec-independent protein translocase protein (TatC) LN249_00575 PF01026 TatD related DNase LN249_00580 PF00490 Delta-aminolevulinic acid dehydratase LN249_00585 PF00583 Acetyltransferase (GNAT) family LN249_00590 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LN249_00590 PF00476 DNA polymerase family A LN249_00590 PF01612 3'-5' exonuclease LN249_00590 PF01367 5'-3' exonuclease, C-terminal SAM fold LN249_00595 PF01926 50S ribosome-binding GTPase LN249_00600 PF00034 Cytochrome c LN249_00610 PF04220 Der GTPase activator (YihI) LN249_00615 PF10675 Protein of unknown function (DUF2489) LN249_00620 PF04055 Radical SAM superfamily LN249_00620 PF06969 HemN C-terminal domain LN249_00625 PF00962 Adenosine/AMP deaminase LN249_00630 PF00990 Diguanylate cyclase, GGDEF domain LN249_00630 PF03707 Bacterial signalling protein N terminal repeat LN249_00630 PF00563 EAL domain LN249_00635 PF00158 Sigma-54 interaction domain LN249_00635 PF02954 Bacterial regulatory protein, Fis family LN249_00635 PF00072 Response regulator receiver domain LN249_00640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_00640 PF00512 His Kinase A (phospho-acceptor) domain LN249_00640 PF00989 PAS fold LN249_00650 PF00120 Glutamine synthetase, catalytic domain LN249_00650 PF03951 Glutamine synthetase, beta-Grasp domain LN249_00655 PF03144 Elongation factor Tu domain 2 LN249_00655 PF00679 Elongation factor G C-terminus LN249_00655 PF00009 Elongation factor Tu GTP binding domain LN249_00670 PF03631 Virulence factor BrkB LN249_00675 PF02580 D-Tyr-tRNA(Tyr) deacylase LN249_00680 PF00583 Acetyltransferase (GNAT) family LN249_00680 PF09500 Putative thioesterase (yiiD_Cterm) LN249_00690 PF01293 Phosphoenolpyruvate carboxykinase LN249_00695 PF01430 Hsp33 protein LN249_00700 PF01479 S4 domain LN249_00705 PF11356 Type II secretion system protein C LN249_00710 PF03958 Bacterial type II/III secretion system short domain LN249_00710 PF00263 Bacterial type II and III secretion system protein LN249_00715 PF00437 Type II/IV secretion system protein LN249_00720 PF00482 Type II secretion system (T2SS), protein F LN249_00725 PF07963 Prokaryotic N-terminal methylation motif LN249_00725 PF08334 Type II secretion system (T2SS), protein G LN249_00730 PF12019 Type II transport protein GspH LN249_00735 PF07963 Prokaryotic N-terminal methylation motif LN249_00735 PF02501 Type II secretion system (T2SS), protein I LN249_00740 PF07963 Prokaryotic N-terminal methylation motif LN249_00740 PF11612 Type II secretion system (T2SS), protein J LN249_00745 PF03934 Type II secretion system (T2SS), protein K LN249_00750 PF05134 Type II secretion system (T2SS), protein L LN249_00750 PF12693 GspL periplasmic domain LN249_00755 PF04612 Type II secretion system (T2SS), protein M LN249_00760 PF01203 Type II secretion system (T2SS), protein N LN249_00765 PF00459 Inositol monophosphatase family LN249_00770 PF00293 NUDIX domain LN249_00775 PF01521 Iron-sulphur cluster biosynthesis LN249_00775 PF01106 NifU-like domain LN249_00780 PF00156 Phosphoribosyl transferase domain LN249_00785 PF00561 alpha/beta hydrolase fold LN249_00795 PF16921 Tex protein YqgF-like domain LN249_00795 PF17674 HHH domain LN249_00795 PF00575 S1 RNA binding domain LN249_00795 PF09371 Tex-like protein N-terminal domain LN249_00805 PF01272 Transcription elongation factor, GreA/GreB, C-term LN249_00805 PF03449 Transcription elongation factor, N-terminal LN249_00815 PF00072 Response regulator receiver domain LN249_00815 PF00486 Transcriptional regulatory protein, C terminal LN249_00820 PF00512 His Kinase A (phospho-acceptor) domain LN249_00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_00820 PF00672 HAMP domain LN249_00825 PF00860 Permease family LN249_00830 PF17191 RecG wedge domain LN249_00830 PF00270 DEAD/DEAH box helicase LN249_00830 PF00271 Helicase conserved C-terminal domain LN249_00835 PF12105 SpoU, rRNA methylase, C-terminal LN249_00835 PF00588 SpoU rRNA Methylase family LN249_00840 PF02824 TGS domain LN249_00840 PF04607 Region found in RelA / SpoT proteins LN249_00840 PF13291 ACT domain LN249_00845 PF01192 RNA polymerase Rpb6 LN249_00850 PF00625 Guanylate kinase LN249_00865 PF02472 Biopolymer transport protein ExbD/TolR LN249_00870 PF01618 MotA/TolQ/ExbB proton channel family LN249_00885 PF00593 TonB dependent receptor LN249_00885 PF07715 TonB-dependent Receptor Plug Domain LN249_00890 PF00528 Binding-protein-dependent transport system inner membrane component LN249_00895 PF12911 N-terminal TM domain of oligopeptide transport permease C LN249_00895 PF00528 Binding-protein-dependent transport system inner membrane component LN249_00900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_00910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_00910 PF00005 ABC transporter LN249_00920 PF08340 Domain of unknown function (DUF1732) LN249_00920 PF03755 YicC-like family, N-terminal region LN249_00925 PF01138 3' exoribonuclease family, domain 1 LN249_00925 PF03725 3' exoribonuclease family, domain 2 LN249_00930 PF00156 Phosphoribosyl transferase domain LN249_00935 PF03279 Bacterial lipid A biosynthesis acyltransferase LN249_00940 PF00440 Bacterial regulatory proteins, tetR family LN249_00945 PF04127 DNA / pantothenate metabolism flavoprotein LN249_00945 PF02441 Flavoprotein LN249_00950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_00950 PF00672 HAMP domain LN249_00950 PF17200 Single Cache domain 2 LN249_00955 PF04002 RadC-like JAB domain LN249_00960 PF00830 Ribosomal L28 family LN249_00965 PF00471 Ribosomal protein L33 LN249_00975 PF06827 Zinc finger found in FPG and IleRS LN249_00975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LN249_00975 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LN249_00980 PF01467 Cytidylyltransferase-like LN249_00985 PF05686 Glycosyl transferase family 90 LN249_00990 PF00535 Glycosyl transferase family 2 LN249_00995 PF00535 Glycosyl transferase family 2 LN249_01000 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LN249_01005 PF01219 Prokaryotic diacylglycerol kinase LN249_01020 PF00535 Glycosyl transferase family 2 LN249_01020 PF01501 Glycosyl transferase family 8 LN249_01030 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LN249_01035 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LN249_01040 PF03279 Bacterial lipid A biosynthesis acyltransferase LN249_01045 PF01370 NAD dependent epimerase/dehydratase family LN249_01050 PF06082 Exopolysaccharide biosynthesis protein YbjH LN249_01075 PF02563 Polysaccharide biosynthesis/export protein LN249_01075 PF10531 SLBB domain LN249_01075 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LN249_01085 PF07836 DmpG-like communication domain LN249_01085 PF00682 HMGL-like LN249_01095 PF02348 Cytidylyltransferase LN249_01110 PF01943 Polysaccharide biosynthesis protein LN249_01115 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_01125 PF00535 Glycosyl transferase family 2 LN249_01130 PF16363 GDP-mannose 4,6 dehydratase LN249_01135 PF00483 Nucleotidyl transferase LN249_01140 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LN249_01150 PF04321 RmlD substrate binding domain LN249_01165 PF00535 Glycosyl transferase family 2 LN249_01170 PF02397 Bacterial sugar transferase LN249_01180 PF00953 Glycosyl transferase family 4 LN249_01185 PF02350 UDP-N-acetylglucosamine 2-epimerase LN249_01190 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LN249_01190 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LN249_01190 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LN249_01200 PF06426 Serine acetyltransferase, N-terminal LN249_01200 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_01205 PF00534 Glycosyl transferases group 1 LN249_01205 PF13439 Glycosyltransferase Family 4 LN249_01225 PF03808 Glycosyl transferase WecB/TagA/CpsF family LN249_01240 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LN249_01240 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LN249_01240 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LN249_01245 PF00483 Nucleotidyl transferase LN249_01250 PF00121 Triosephosphate isomerase LN249_01275 PF00455 DeoR C terminal sensor domain LN249_01275 PF08220 DeoR-like helix-turn-helix domain LN249_01280 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LN249_01285 PF06005 Cell division protein ZapB LN249_01290 PF03737 Aldolase/RraA LN249_01295 PF01040 UbiA prenyltransferase family LN249_01300 PF00004 ATPase family associated with various cellular activities (AAA) LN249_01300 PF07724 AAA domain (Cdc48 subfamily) LN249_01305 PF00227 Proteasome subunit LN249_01315 PF00356 Bacterial regulatory proteins, lacI family LN249_01320 PF18074 Primosomal protein N C-terminal domain LN249_01320 PF17764 3′ DNA-binding domain (3′BD) LN249_01320 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LN249_01320 PF00270 DEAD/DEAH box helicase LN249_01320 PF00271 Helicase conserved C-terminal domain LN249_01325 PF01197 Ribosomal protein L31 LN249_01330 PF00338 Ribosomal protein S10p/S20e LN249_01335 PF00297 Ribosomal protein L3 LN249_01340 PF00573 Ribosomal protein L4/L1 family LN249_01345 PF00276 Ribosomal protein L23 LN249_01350 PF00181 Ribosomal Proteins L2, RNA binding domain LN249_01350 PF03947 Ribosomal Proteins L2, C-terminal domain LN249_01355 PF00203 Ribosomal protein S19 LN249_01360 PF00237 Ribosomal protein L22p/L17e LN249_01365 PF07650 KH domain LN249_01365 PF00189 Ribosomal protein S3, C-terminal domain LN249_01370 PF00252 Ribosomal protein L16p/L10e LN249_01375 PF00831 Ribosomal L29 protein LN249_01380 PF00366 Ribosomal protein S17 LN249_01385 PF00238 Ribosomal protein L14p/L23e LN249_01390 PF00467 KOW motif LN249_01390 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LN249_01395 PF00281 Ribosomal protein L5 LN249_01395 PF00673 ribosomal L5P family C-terminus LN249_01400 PF00253 Ribosomal protein S14p/S29e LN249_01405 PF00410 Ribosomal protein S8 LN249_01410 PF00347 Ribosomal protein L6 LN249_01415 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LN249_01420 PF00333 Ribosomal protein S5, N-terminal domain LN249_01420 PF03719 Ribosomal protein S5, C-terminal domain LN249_01425 PF00327 Ribosomal protein L30p/L7e LN249_01430 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LN249_01435 PF00344 SecY translocase LN249_01440 PF00444 Ribosomal protein L36 LN249_01445 PF00416 Ribosomal protein S13/S18 LN249_01450 PF00411 Ribosomal protein S11 LN249_01455 PF01479 S4 domain LN249_01455 PF00163 Ribosomal protein S4/S9 N-terminal domain LN249_01460 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LN249_01460 PF01000 RNA polymerase Rpb3/RpoA insert domain LN249_01460 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LN249_01465 PF01196 Ribosomal protein L17 LN249_01475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LN249_01475 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LN249_01485 PF13673 Acetyltransferase (GNAT) domain LN249_01490 PF03880 DbpA RNA binding domain LN249_01490 PF00270 DEAD/DEAH box helicase LN249_01490 PF00271 Helicase conserved C-terminal domain LN249_01500 PF02872 5'-nucleotidase, C-terminal domain LN249_01500 PF00149 Calcineurin-like phosphoesterase LN249_01505 PF10414 Sirohaem synthase dimerisation region LN249_01505 PF14824 Sirohaem biosynthesis protein central LN249_01505 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LN249_01510 PF01507 Phosphoadenosine phosphosulfate reductase family LN249_01515 PF00009 Elongation factor Tu GTP binding domain LN249_01520 PF02080 TrkA-C domain LN249_01520 PF03600 Citrate transporter LN249_01545 PF00005 ABC transporter LN249_01555 PF10795 Protein of unknown function (DUF2607) LN249_01560 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LN249_01565 PF06526 Protein of unknown function (DUF1107) LN249_01570 PF01625 Peptide methionine sulfoxide reductase LN249_01575 PF01103 Surface antigen LN249_01575 PF17243 POTRA domain TamA domain 1 LN249_01580 PF04357 TamB, inner membrane protein subunit of TAM complex LN249_01585 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LN249_01595 PF00719 Inorganic pyrophosphatase LN249_01600 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LN249_01605 PF02875 Mur ligase family, glutamate ligase domain LN249_01605 PF01225 Mur ligase family, catalytic domain LN249_01605 PF08245 Mur ligase middle domain LN249_01610 PF02441 Flavoprotein LN249_01620 PF00528 Binding-protein-dependent transport system inner membrane component LN249_01625 PF00005 ABC transporter LN249_01630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_01630 PF03466 LysR substrate binding domain LN249_01635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LN249_01650 PF16868 NMT1-like family LN249_01655 PF01316 Arginine repressor, DNA binding domain LN249_01655 PF02863 Arginine repressor, C-terminal domain LN249_01660 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LN249_01660 PF00056 lactate/malate dehydrogenase, NAD binding domain LN249_01670 PF00348 Polyprenyl synthetase LN249_01675 PF00829 Ribosomal prokaryotic L21 protein LN249_01680 PF01016 Ribosomal L27 protein LN249_01685 PF01018 GTP1/OBG LN249_01685 PF01926 50S ribosome-binding GTPase LN249_01690 PF06738 Putative threonine/serine exporter LN249_01695 PF12821 Threonine/Serine exporter, ThrE LN249_01700 PF00186 Dihydrofolate reductase LN249_01705 PF00149 Calcineurin-like phosphoesterase LN249_01710 PF04379 ApaG domain LN249_01715 PF00398 Ribosomal RNA adenine dimethylase LN249_01720 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LN249_01725 PF09312 SurA N-terminal domain LN249_01730 PF03968 OstA-like protein LN249_01730 PF04453 LPS transport system D LN249_01735 PF00226 DnaJ domain LN249_01735 PF05099 Tellurite resistance protein TerB LN249_01745 PF00694 Aconitase C-terminal domain LN249_01750 PF00330 Aconitase family (aconitate hydratase) LN249_01755 PF00180 Isocitrate/isopropylmalate dehydrogenase LN249_01760 PF08502 LeuA allosteric (dimerisation) domain LN249_01760 PF00682 HMGL-like LN249_01770 PF01569 PAP2 superfamily LN249_01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_01780 PF03466 LysR substrate binding domain LN249_01785 PF00501 AMP-binding enzyme LN249_01790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LN249_01790 PF00205 Thiamine pyrophosphate enzyme, central domain LN249_01790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LN249_01795 PF10369 Small subunit of acetolactate synthase LN249_01800 PF00990 Diguanylate cyclase, GGDEF domain LN249_01810 PF02887 Pyruvate kinase, alpha/beta domain LN249_01810 PF00224 Pyruvate kinase, barrel domain LN249_01815 PF08220 DeoR-like helix-turn-helix domain LN249_01815 PF00455 DeoR C terminal sensor domain LN249_01820 PF01380 SIS domain LN249_01830 PF00072 Response regulator receiver domain LN249_01830 PF00486 Transcriptional regulatory protein, C terminal LN249_01835 PF00512 His Kinase A (phospho-acceptor) domain LN249_01835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_01835 PF00672 HAMP domain LN249_01840 PF00465 Iron-containing alcohol dehydrogenase LN249_01845 PF02733 Dak1 domain LN249_01850 PF02734 DAK2 domain LN249_01855 PF05524 PEP-utilising enzyme, N-terminal LN249_01855 PF00391 PEP-utilising enzyme, mobile domain LN249_01855 PF02896 PEP-utilising enzyme, TIM barrel domain LN249_01860 PF02954 Bacterial regulatory protein, Fis family LN249_01860 PF00989 PAS fold LN249_01860 PF00158 Sigma-54 interaction domain LN249_01865 PF05068 Mannitol repressor LN249_01870 PF01232 Mannitol dehydrogenase Rossmann domain LN249_01870 PF08125 Mannitol dehydrogenase C-terminal domain LN249_01875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LN249_01875 PF02378 Phosphotransferase system, EIIC LN249_01875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LN249_01905 PF03180 NLPA lipoprotein LN249_01915 PF04546 Sigma-70, non-essential region LN249_01915 PF03979 Sigma-70 factor, region 1.1 LN249_01915 PF00140 Sigma-70 factor, region 1.2 LN249_01915 PF04542 Sigma-70 region 2 LN249_01915 PF04539 Sigma-70 region 3 LN249_01915 PF04545 Sigma-70, region 4 LN249_01920 PF10410 DnaB-helicase binding domain of primase LN249_01920 PF08278 DNA primase DnaG DnaB-binding LN249_01920 PF08275 DNA primase catalytic core, N-terminal domain LN249_01920 PF01807 CHC2 zinc finger LN249_01925 PF09424 Yqey-like protein LN249_01930 PF01165 Ribosomal protein S21 LN249_01935 PF00814 Glycoprotease family LN249_01940 PF00561 alpha/beta hydrolase fold LN249_01945 PF02660 Glycerol-3-phosphate acyltransferase LN249_01950 PF02152 Dihydroneopterin aldolase LN249_01955 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LN249_01960 PF02673 Bacitracin resistance protein BacA LN249_01965 PF01966 HD domain LN249_01965 PF01743 Poly A polymerase head domain LN249_01965 PF12627 Probable RNA and SrmB- binding site of polymerase A LN249_01985 PF08239 Bacterial SH3 domain LN249_01990 PF01384 Phosphate transporter family LN249_01995 PF01865 Protein of unknown function DUF47 LN249_02000 PF01928 CYTH domain LN249_02010 PF02743 Cache domain LN249_02010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_02010 PF00672 HAMP domain LN249_02015 PF08335 GlnD PII-uridylyltransferase LN249_02015 PF03710 Glutamate-ammonia ligase adenylyltransferase LN249_02020 PF01467 Cytidylyltransferase-like LN249_02020 PF00294 pfkB family carbohydrate kinase LN249_02025 PF02321 Outer membrane efflux protein LN249_02030 PF00293 NUDIX domain LN249_02035 PF06853 Protein of unknown function (DUF1249) LN249_02040 PF00149 Calcineurin-like phosphoesterase LN249_02045 PF05728 Uncharacterised protein family (UPF0227) LN249_02050 PF01751 Toprim domain LN249_02050 PF00204 DNA gyrase B LN249_02050 PF00986 DNA gyrase B subunit, carboxyl terminus LN249_02050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_02055 PF03989 DNA gyrase C-terminal domain, beta-propeller LN249_02055 PF00521 DNA gyrase/topoisomerase IV, subunit A LN249_02060 PF13180 PDZ domain LN249_02065 PF00595 PDZ domain LN249_02070 PF06295 Protein of unknown function (DUF1043) LN249_02075 PF03969 AFG1-like ATPase LN249_02080 PF00572 Ribosomal protein L13 LN249_02085 PF00380 Ribosomal protein S9/S16 LN249_02090 PF00355 Rieske [2Fe-2S] domain LN249_02090 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LN249_02095 PF00032 Cytochrome b(C-terminal)/b6/petD LN249_02095 PF00033 Cytochrome b/b6/petB LN249_02100 PF02167 Cytochrome C1 family LN249_02105 PF00043 Glutathione S-transferase, C-terminal domain LN249_02105 PF02798 Glutathione S-transferase, N-terminal domain LN249_02110 PF04386 Stringent starvation protein B LN249_02115 PF04972 BON domain LN249_02120 PF13580 SIS domain LN249_02125 PF02021 Uncharacterised protein family UPF0102 LN249_02130 PF04348 LppC putative lipoprotein LN249_02135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LN249_02145 PF01795 MraW methylase family LN249_02150 PF04999 Cell division protein FtsL LN249_02155 PF03717 Penicillin-binding Protein dimerisation domain LN249_02155 PF00905 Penicillin binding protein transpeptidase domain LN249_02160 PF08245 Mur ligase middle domain LN249_02160 PF01225 Mur ligase family, catalytic domain LN249_02160 PF02875 Mur ligase family, glutamate ligase domain LN249_02165 PF01225 Mur ligase family, catalytic domain LN249_02165 PF02875 Mur ligase family, glutamate ligase domain LN249_02165 PF08245 Mur ligase middle domain LN249_02170 PF00953 Glycosyl transferase family 4 LN249_02170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LN249_02175 PF02875 Mur ligase family, glutamate ligase domain LN249_02175 PF08245 Mur ligase middle domain LN249_02185 PF04101 Glycosyltransferase family 28 C-terminal domain LN249_02185 PF03033 Glycosyltransferase family 28 N-terminal domain LN249_02190 PF08245 Mur ligase middle domain LN249_02190 PF02875 Mur ligase family, glutamate ligase domain LN249_02190 PF01225 Mur ligase family, catalytic domain LN249_02195 PF03799 Cell division protein FtsQ LN249_02195 PF08478 POTRA domain, FtsQ-type LN249_02200 PF02491 SHS2 domain inserted in FTSA LN249_02205 PF12327 FtsZ family, C-terminal domain LN249_02205 PF00091 Tubulin/FtsZ family, GTPase domain LN249_02210 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LN249_02220 PF01043 SecA preprotein cross-linking domain LN249_02220 PF07517 SecA DEAD-like domain LN249_02220 PF02810 SEC-C motif LN249_02220 PF07516 SecA Wing and Scaffold domain LN249_02225 PF00293 NUDIX domain LN249_02230 PF05173 Dihydrodipicolinate reductase, C-terminus LN249_02230 PF01113 Dihydrodipicolinate reductase, N-terminus LN249_02235 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LN249_02235 PF00117 Glutamine amidotransferase class-I LN249_02240 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LN249_02240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LN249_02240 PF02142 MGS-like domain LN249_02255 PF01925 Sulfite exporter TauE/SafE LN249_02270 PF03466 LysR substrate binding domain LN249_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_02275 PF03458 UPF0126 domain LN249_02280 PF01497 Periplasmic binding protein LN249_02285 PF03186 CobD/Cbib protein LN249_02285 PF17113 Regulatory signalling modulator protein AmpE LN249_02290 PF01048 Phosphorylase superfamily LN249_02300 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_02300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LN249_02305 PF00310 Glutamine amidotransferases class-II LN249_02305 PF04898 Glutamate synthase central domain LN249_02305 PF01645 Conserved region in glutamate synthase LN249_02305 PF01493 GXGXG motif LN249_02310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LN249_02310 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_02315 PF00310 Glutamine amidotransferases class-II LN249_02315 PF04898 Glutamate synthase central domain LN249_02315 PF01645 Conserved region in glutamate synthase LN249_02315 PF01493 GXGXG motif LN249_02320 PF16199 Radical_SAM C-terminal domain LN249_02320 PF04055 Radical SAM superfamily LN249_02325 PF00360 Phytochrome region LN249_02325 PF00563 EAL domain LN249_02325 PF00990 Diguanylate cyclase, GGDEF domain LN249_02325 PF01590 GAF domain LN249_02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_02330 PF00512 His Kinase A (phospho-acceptor) domain LN249_02330 PF18415 Histidine kinase receptor ArcB trans-membrane domain LN249_02330 PF01627 Hpt domain LN249_02330 PF00989 PAS fold LN249_02330 PF00072 Response regulator receiver domain LN249_02340 PF00072 Response regulator receiver domain LN249_02340 PF00486 Transcriptional regulatory protein, C terminal LN249_02350 PF03737 Aldolase/RraA LN249_02365 PF03447 Homoserine dehydrogenase, NAD binding domain LN249_02365 PF00742 Homoserine dehydrogenase LN249_02365 PF01842 ACT domain LN249_02365 PF00696 Amino acid kinase family LN249_02365 PF13840 ACT domain LN249_02370 PF08544 GHMP kinases C terminal LN249_02370 PF00288 GHMP kinases N terminal domain LN249_02375 PF00291 Pyridoxal-phosphate dependent enzyme LN249_02375 PF14821 Threonine synthase N terminus LN249_02385 PF01228 Glycine radical LN249_02390 PF01261 Xylose isomerase-like TIM barrel LN249_02395 PF03167 Uracil DNA glycosylase superfamily LN249_02410 PF01235 Sodium:alanine symporter family LN249_02415 PF03883 Peroxide stress protein YaaA LN249_02420 PF00271 Helicase conserved C-terminal domain LN249_02420 PF00270 DEAD/DEAH box helicase LN249_02425 PF05175 Methyltransferase small domain LN249_02430 PF05525 Branched-chain amino acid transport protein LN249_02435 PF00258 Flavodoxin LN249_02440 PF02899 Phage integrase, N-terminal SAM-like domain LN249_02440 PF00589 Phage integrase family LN249_02445 PF10411 Disulfide bond isomerase protein N-terminus LN249_02445 PF13098 Thioredoxin-like domain LN249_02450 PF01368 DHH family LN249_02450 PF17768 RecJ OB domain LN249_02450 PF02272 DHHA1 domain LN249_02460 PF00152 tRNA synthetases class II (D, K and N) LN249_02460 PF01336 OB-fold nucleic acid binding domain LN249_02465 PF00072 Response regulator receiver domain LN249_02465 PF02954 Bacterial regulatory protein, Fis family LN249_02465 PF00158 Sigma-54 interaction domain LN249_02475 PF00248 Aldo/keto reductase family LN249_02485 PF02976 DNA mismatch repair enzyme MutH LN249_02490 PF00293 NUDIX domain LN249_02495 PF01590 GAF domain LN249_02495 PF05524 PEP-utilising enzyme, N-terminal LN249_02495 PF00391 PEP-utilising enzyme, mobile domain LN249_02495 PF02896 PEP-utilising enzyme, TIM barrel domain LN249_02500 PF01925 Sulfite exporter TauE/SafE LN249_02505 PF01790 Prolipoprotein diacylglyceryl transferase LN249_02510 PF00303 Thymidylate synthase LN249_02520 PF02690 Na+/Pi-cotransporter LN249_02525 PF03466 LysR substrate binding domain LN249_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_02530 PF01022 Bacterial regulatory protein, arsR family LN249_02535 PF01649 Ribosomal protein S20 LN249_02540 PF03023 Lipid II flippase MurJ LN249_02545 PF06574 FAD synthetase LN249_02545 PF01687 Riboflavin kinase LN249_02550 PF08264 Anticodon-binding domain of tRNA LN249_02550 PF00133 tRNA synthetases class I (I, L, M and V) LN249_02550 PF06827 Zinc finger found in FPG and IleRS LN249_02555 PF01252 Signal peptidase (SPase) II LN249_02560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LN249_02565 PF02401 LytB protein LN249_02575 PF04397 LytTr DNA-binding domain LN249_02575 PF00072 Response regulator receiver domain LN249_02580 PF07694 5TMR of 5TMR-LYT LN249_02580 PF06580 Histidine kinase LN249_02585 PF02554 Carbon starvation protein CstA LN249_02600 PF01380 SIS domain LN249_02605 PF03702 Anhydro-N-acetylmuramic acid kinase LN249_02610 PF00933 Glycosyl hydrolase family 3 N terminal domain LN249_02615 PF00793 DAHP synthetase I family LN249_02620 PF01817 Chorismate mutase type II LN249_02620 PF02153 Prephenate dehydrogenase LN249_02625 PF10145 Phage-related minor tail protein LN249_02625 PF01464 Transglycosylase SLT domain LN249_02625 PF01551 Peptidase family M23 LN249_02630 PF07238 PilZ domain LN249_02635 PF00005 ABC transporter LN249_02635 PF12848 ABC transporter LN249_02640 PF01464 Transglycosylase SLT domain LN249_02640 PF14718 Soluble lytic murein transglycosylase L domain LN249_02645 PF01371 Trp repressor protein LN249_02650 PF01931 Protein of unknown function DUF84 LN249_02655 PF01817 Chorismate mutase type II LN249_02655 PF00800 Prephenate dehydratase LN249_02660 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LN249_02665 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_02665 PF01464 Transglycosylase SLT domain LN249_02670 PF13525 Outer membrane lipoprotein LN249_02675 PF01479 S4 domain LN249_02675 PF00849 RNA pseudouridylate synthase LN249_02680 PF02578 Multi-copper polyphenol oxidoreductase laccase LN249_02685 PF07724 AAA domain (Cdc48 subfamily) LN249_02685 PF17871 AAA lid domain LN249_02685 PF02861 Clp amino terminal domain, pathogenicity island component LN249_02685 PF10431 C-terminal, D2-small domain, of ClpB protein LN249_02685 PF00004 ATPase family associated with various cellular activities (AAA) LN249_02730 PF03411 Penicillin-insensitive murein endopeptidase LN249_02740 PF00037 4Fe-4S binding domain LN249_02745 PF01136 Peptidase family U32 LN249_02745 PF16325 Peptidase family U32 C-terminal domain LN249_02750 PF04381 Putative exonuclease, RdgC LN249_02755 PF00486 Transcriptional regulatory protein, C terminal LN249_02755 PF00072 Response regulator receiver domain LN249_02760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_02760 PF00512 His Kinase A (phospho-acceptor) domain LN249_02760 PF00989 PAS fold LN249_02760 PF11808 Phosphate regulon sensor protein PhoR LN249_02765 PF12849 PBP superfamily domain LN249_02770 PF02541 Ppx/GppA phosphatase family LN249_02775 PF17941 Polyphosphate kinase C-terminal domain 1 LN249_02775 PF13089 Polyphosphate kinase N-terminal domain LN249_02775 PF02503 Polyphosphate kinase middle domain LN249_02775 PF13090 Polyphosphate kinase C-terminal domain 2 LN249_02780 PF00528 Binding-protein-dependent transport system inner membrane component LN249_02785 PF00528 Binding-protein-dependent transport system inner membrane component LN249_02790 PF00005 ABC transporter LN249_02795 PF01895 PhoU domain LN249_02800 PF03976 Polyphosphate kinase 2 (PPK2) LN249_02805 PF03932 CutC family LN249_02810 PF10417 C-terminal domain of 1-Cys peroxiredoxin LN249_02810 PF00578 AhpC/TSA family LN249_02815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_02815 PF03466 LysR substrate binding domain LN249_02820 PF01274 Malate synthase LN249_02825 PF00463 Isocitrate lyase family LN249_02830 PF00571 CBS domain LN249_02840 PF02547 Queuosine biosynthesis protein LN249_02845 PF01702 Queuine tRNA-ribosyltransferase LN249_02850 PF02699 Preprotein translocase subunit LN249_02855 PF02355 Protein export membrane protein LN249_02855 PF13721 SecD export protein N-terminal TM region LN249_02855 PF07549 SecD/SecF GG Motif LN249_02860 PF02355 Protein export membrane protein LN249_02860 PF07549 SecD/SecF GG Motif LN249_02865 PF00459 Inositol monophosphatase family LN249_02870 PF00588 SpoU rRNA Methylase family LN249_02875 PF02082 Transcriptional regulator LN249_02880 PF00266 Aminotransferase class-V LN249_02885 PF01592 NifU-like N terminal domain LN249_02890 PF01521 Iron-sulphur cluster biosynthesis LN249_02895 PF00226 DnaJ domain LN249_02895 PF07743 HSCB C-terminal oligomerisation domain LN249_02900 PF00012 Hsp70 protein LN249_02905 PF00111 2Fe-2S iron-sulfur cluster binding domain LN249_02910 PF04384 Iron-sulphur cluster assembly LN249_02915 PF12404 Peptidase LN249_02915 PF00883 Cytosol aminopeptidase family, catalytic domain LN249_02920 PF00334 Nucleoside diphosphate kinase LN249_02925 PF04055 Radical SAM superfamily LN249_02930 PF13464 Domain of unknown function (DUF4115) LN249_02935 PF04551 GcpE protein LN249_02940 PF03129 Anticodon binding domain LN249_02940 PF13393 Histidyl-tRNA synthetase LN249_02945 PF09976 Tetratricopeptide repeat-like domain LN249_02950 PF13360 PQQ-like domain LN249_02955 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LN249_02955 PF01926 50S ribosome-binding GTPase LN249_02970 PF02601 Exonuclease VII, large subunit LN249_02970 PF13742 OB-fold nucleic acid binding domain LN249_02975 PF00478 IMP dehydrogenase / GMP reductase domain LN249_02975 PF00571 CBS domain LN249_02980 PF02540 NAD synthase LN249_02980 PF00117 Glutamine amidotransferase class-I LN249_02980 PF00958 GMP synthase C terminal domain LN249_02985 PF03553 Na+/H+ antiporter family LN249_02990 PF00704 Glycosyl hydrolases family 18 LN249_02990 PF06483 Chitinase C LN249_02995 PF01184 GPR1/FUN34/yaaH family LN249_03000 PF01235 Sodium:alanine symporter family LN249_03005 PF01266 FAD dependent oxidoreductase LN249_03015 PF07969 Amidohydrolase family LN249_03020 PF01053 Cys/Met metabolism PLP-dependent enzyme LN249_03025 PF00202 Aminotransferase class-III LN249_03045 PF00583 Acetyltransferase (GNAT) family LN249_03045 PF00795 Carbon-nitrogen hydrolase LN249_03050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_03050 PF03466 LysR substrate binding domain LN249_03060 PF01381 Helix-turn-helix LN249_03090 PF03707 Bacterial signalling protein N terminal repeat LN249_03090 PF13188 PAS domain LN249_03090 PF00563 EAL domain LN249_03090 PF00990 Diguanylate cyclase, GGDEF domain LN249_03095 PF12833 Helix-turn-helix domain LN249_03135 PF02796 Helix-turn-helix domain of resolvase LN249_03135 PF00239 Resolvase, N terminal domain LN249_03140 PF09019 EcoRII C terminal LN249_03140 PF09217 Restriction endonuclease EcoRII, N-terminal LN249_03145 PF18284 DNA methylase N-terminal domain LN249_03145 PF00145 C-5 cytosine-specific DNA methylase LN249_03160 PF13356 Arm DNA-binding domain LN249_03160 PF00589 Phage integrase family LN249_03170 PF01668 SmpB protein LN249_03175 PF03364 Polyketide cyclase / dehydrase and lipid transport LN249_03180 PF03658 RnfH family Ubiquitin LN249_03185 PF04355 SmpA / OmlA family LN249_03190 PF02463 RecF/RecN/SMC N terminal domain LN249_03200 PF01513 ATP-NAD kinase LN249_03205 PF01025 GrpE LN249_03210 PF00375 Sodium:dicarboxylate symporter family LN249_03215 PF00012 Hsp70 protein LN249_03220 PF00684 DnaJ central domain LN249_03220 PF00226 DnaJ domain LN249_03220 PF01556 DnaJ C terminal domain LN249_03225 PF00114 Pilin (bacterial filament) LN249_03225 PF07963 Prokaryotic N-terminal methylation motif LN249_03230 PF00114 Pilin (bacterial filament) LN249_03230 PF07963 Prokaryotic N-terminal methylation motif LN249_03250 PF03806 AbgT putative transporter family LN249_03255 PF14437 MafB19-like deaminase LN249_03260 PF01464 Transglycosylase SLT domain LN249_03260 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_03265 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LN249_03265 PF02769 AIR synthase related protein, C-terminal domain LN249_03265 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LN249_03280 PF07715 TonB-dependent Receptor Plug Domain LN249_03280 PF00593 TonB dependent receptor LN249_03295 PF07687 Peptidase dimerisation domain LN249_03295 PF01546 Peptidase family M20/M25/M40 LN249_03300 PF00860 Permease family LN249_03305 PF00156 Phosphoribosyl transferase domain LN249_03310 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LN249_03315 PF07417 Sigma factor-binding transcriptional regulator Crl LN249_03320 PF01472 PUA domain LN249_03320 PF00696 Amino acid kinase family LN249_03325 PF00171 Aldehyde dehydrogenase family LN249_03330 PF03477 ATP cone domain LN249_03335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LN249_03335 PF01872 RibD C-terminal domain LN249_03340 PF00677 Lumazine binding domain LN249_03345 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LN249_03345 PF00925 GTP cyclohydrolase II LN249_03350 PF00885 6,7-dimethyl-8-ribityllumazine synthase LN249_03355 PF01029 NusB family LN249_03360 PF00586 AIR synthase related protein, N-terminal domain LN249_03360 PF02769 AIR synthase related protein, C-terminal domain LN249_03365 PF04608 Phosphatidylglycerophosphatase A LN249_03370 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LN249_03370 PF02779 Transketolase, pyrimidine binding domain LN249_03370 PF02780 Transketolase, C-terminal domain LN249_03375 PF00348 Polyprenyl synthetase LN249_03380 PF02609 Exonuclease VII small subunit LN249_03385 PF01618 MotA/TolQ/ExbB proton channel family LN249_03390 PF00691 OmpA family LN249_03390 PF13677 Membrane MotB of proton-channel complex MotA/MotB LN249_03395 PF02926 THUMP domain LN249_03395 PF02568 Thiamine biosynthesis protein (ThiI) LN249_03400 PF03466 LysR substrate binding domain LN249_03400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_03410 PF04241 Protein of unknown function (DUF423) LN249_03415 PF18125 RlmM ferredoxin-like domain LN249_03415 PF01728 FtsJ-like methyltransferase LN249_03420 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LN249_03420 PF01367 5'-3' exonuclease, C-terminal SAM fold LN249_03425 PF03641 Possible lysine decarboxylase LN249_03425 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LN249_03425 PF11892 Domain of unknown function (DUF3412) LN249_03430 PF00990 Diguanylate cyclase, GGDEF domain LN249_03440 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LN249_03440 PF14489 QueF-like protein LN249_03445 PF07348 Syd protein (SUKH-2) LN249_03450 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LN249_03455 PF03180 NLPA lipoprotein LN249_03460 PF00528 Binding-protein-dependent transport system inner membrane component LN249_03465 PF09383 NIL domain LN249_03465 PF00005 ABC transporter LN249_03475 PF00356 Bacterial regulatory proteins, lacI family LN249_03480 PF02378 Phosphotransferase system, EIIC LN249_03480 PF00367 phosphotransferase system, EIIB LN249_03485 PF00128 Alpha amylase, catalytic domain LN249_03485 PF16657 Maltogenic Amylase, C-terminal domain LN249_03500 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LN249_03500 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LN249_03505 PF00464 Serine hydroxymethyltransferase LN249_03510 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LN249_03510 PF04055 Radical SAM superfamily LN249_03515 PF03099 Biotin/lipoate A/B protein ligase family LN249_03520 PF04359 Protein of unknown function (DUF493) LN249_03525 PF07943 Penicillin-binding protein 5, C-terminal domain LN249_03525 PF00768 D-alanyl-D-alanine carboxypeptidase LN249_03530 PF05036 Sporulation related domain LN249_03530 PF03330 Lytic transglycolase LN249_03535 PF01098 Cell cycle protein LN249_03540 PF00905 Penicillin binding protein transpeptidase domain LN249_03540 PF03717 Penicillin-binding Protein dimerisation domain LN249_03545 PF02590 Predicted SPOUT methyltransferase LN249_03555 PF06144 DNA polymerase III, delta subunit LN249_03555 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LN249_03560 PF04390 Lipopolysaccharide-assembly LN249_03565 PF13603 Leucyl-tRNA synthetase, Domain 2 LN249_03565 PF00133 tRNA synthetases class I (I, L, M and V) LN249_03565 PF08264 Anticodon-binding domain of tRNA LN249_03570 PF07295 Zinc-ribbon containing domain LN249_03575 PF00795 Carbon-nitrogen hydrolase LN249_03580 PF03471 Transporter associated domain LN249_03580 PF00571 CBS domain LN249_03585 PF02130 Uncharacterized protein family UPF0054 LN249_03590 PF02562 PhoH-like protein LN249_03595 PF00919 Uncharacterized protein family UPF0004 LN249_03595 PF04055 Radical SAM superfamily LN249_03595 PF01938 TRAM domain LN249_03600 PF01494 FAD binding domain LN249_03705 PF06071 Protein of unknown function (DUF933) LN249_03705 PF01926 50S ribosome-binding GTPase LN249_03710 PF01195 Peptidyl-tRNA hydrolase LN249_03715 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LN249_03715 PF14572 Phosphoribosyl synthetase-associated domain LN249_03720 PF00288 GHMP kinases N terminal domain LN249_03720 PF08544 GHMP kinases C terminal LN249_03725 PF03550 Outer membrane lipoprotein LolB LN249_03730 PF01488 Shikimate / quinate 5-dehydrogenase LN249_03730 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LN249_03730 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LN249_03735 PF03462 PCRF domain LN249_03735 PF00472 RF-1 domain LN249_03740 PF17827 PrmC N-terminal domain LN249_03740 PF13847 Methyltransferase domain LN249_03745 PF04247 Invasion gene expression up-regulator, SirB LN249_03750 PF13369 Transglutaminase-like superfamily LN249_03755 PF00793 DAHP synthetase I family LN249_03760 PF00149 Calcineurin-like phosphoesterase LN249_03760 PF02872 5'-nucleotidase, C-terminal domain LN249_03765 PF04073 Aminoacyl-tRNA editing domain LN249_03770 PF01479 S4 domain LN249_03770 PF00849 RNA pseudouridylate synthase LN249_03775 PF01713 Smr domain LN249_03800 PF00728 Glycosyl hydrolase family 20, catalytic domain LN249_03800 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LN249_03800 PF03173 Putative carbohydrate binding domain LN249_03800 PF02838 Glycosyl hydrolase family 20, domain 2 LN249_03815 PF00403 Heavy-metal-associated domain LN249_03820 PF13609 Gram-negative porin LN249_03825 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LN249_03830 PF00749 tRNA synthetases class I (E and Q), catalytic domain LN249_03835 PF01389 OmpA-like transmembrane domain LN249_03835 PF00691 OmpA family LN249_03880 PF00072 Response regulator receiver domain LN249_03880 PF01584 CheW-like domain LN249_03885 PF01739 CheR methyltransferase, SAM binding domain LN249_03885 PF03705 CheR methyltransferase, all-alpha domain LN249_03890 PF00460 Flagella basal body rod protein LN249_03895 PF00460 Flagella basal body rod protein LN249_03895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_03900 PF13861 FlgD Tudor-like domain LN249_03900 PF03963 Flagellar hook capping protein - N-terminal region LN249_03900 PF13860 FlgD Ig-like domain LN249_03905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_03905 PF00460 Flagella basal body rod protein LN249_03905 PF07559 Flagellar basal body protein FlaE LN249_03910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_03910 PF00460 Flagella basal body rod protein LN249_03915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_03915 PF00460 Flagella basal body rod protein LN249_03920 PF02107 Flagellar L-ring protein LN249_03925 PF02119 Flagellar P-ring protein LN249_03930 PF10135 Rod binding protein LN249_03930 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LN249_03935 PF07196 Flagellin hook IN motif LN249_03935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_03940 PF00669 Bacterial flagellin N-terminal helical region LN249_03945 PF00700 Bacterial flagellin C-terminal helical region LN249_03945 PF00669 Bacterial flagellin N-terminal helical region LN249_03945 PF07196 Flagellin hook IN motif LN249_03950 PF07196 Flagellin hook IN motif LN249_03950 PF00669 Bacterial flagellin N-terminal helical region LN249_03950 PF00700 Bacterial flagellin C-terminal helical region LN249_03955 PF00700 Bacterial flagellin C-terminal helical region LN249_03955 PF07196 Flagellin hook IN motif LN249_03955 PF00669 Bacterial flagellin N-terminal helical region LN249_03960 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LN249_03965 PF05524 PEP-utilising enzyme, N-terminal LN249_03965 PF00391 PEP-utilising enzyme, mobile domain LN249_03965 PF02896 PEP-utilising enzyme, TIM barrel domain LN249_03970 PF00381 PTS HPr component phosphorylation site LN249_03975 PF00291 Pyridoxal-phosphate dependent enzyme LN249_03985 PF04354 ZipA, C-terminal FtsZ-binding domain LN249_03990 PF00533 BRCA1 C Terminus (BRCT) domain LN249_03990 PF01653 NAD-dependent DNA ligase adenylation domain LN249_03990 PF12826 Helix-hairpin-helix motif LN249_03990 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LN249_03990 PF03120 NAD-dependent DNA ligase OB-fold domain LN249_03995 PF03573 outer membrane porin, OprD family LN249_04010 PF16200 C-terminal region of band_7 LN249_04010 PF01145 SPFH domain / Band 7 family LN249_04015 PF00085 Thioredoxin LN249_04020 PF00106 short chain dehydrogenase LN249_04025 PF01370 NAD dependent epimerase/dehydratase family LN249_04025 PF08338 Domain of unknown function (DUF1731) LN249_04030 PF07556 Protein of unknown function (DUF1538) LN249_04035 PF07556 Protein of unknown function (DUF1538) LN249_04055 PF12850 Calcineurin-like phosphoesterase superfamily domain LN249_04070 PF17323 Trans-membrane regulatory protein ToxS LN249_04075 PF00486 Transcriptional regulatory protein, C terminal LN249_04080 PF00183 Hsp90 protein LN249_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_04085 PF05191 Adenylate kinase, active site lid LN249_04090 PF00762 Ferrochelatase LN249_04095 PF00854 POT family LN249_04100 PF02357 Transcription termination factor nusG LN249_04105 PF00733 Asparagine synthase LN249_04105 PF13537 Glutamine amidotransferase domain LN249_04110 PF00999 Sodium/hydrogen exchanger family LN249_04110 PF02254 TrkA-N domain LN249_04115 PF01047 MarR family LN249_04115 PF00480 ROK family LN249_04120 PF01979 Amidohydrolase family LN249_04125 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LN249_04125 PF00367 phosphotransferase system, EIIB LN249_04125 PF02378 Phosphotransferase system, EIIC LN249_04130 PF00749 tRNA synthetases class I (E and Q), catalytic domain LN249_04130 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LN249_04135 PF01475 Ferric uptake regulator family LN249_04145 PF00258 Flavodoxin LN249_04155 PF12697 Alpha/beta hydrolase family LN249_04160 PF17206 SeqA protein N-terminal domain LN249_04160 PF03925 SeqA protein C-terminal domain LN249_04165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LN249_04165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LN249_04165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LN249_04165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LN249_04175 PF01784 NIF3 (NGG1p interacting factor 3) LN249_04180 PF00285 Citrate synthase, C-terminal domain LN249_04185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LN249_04190 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LN249_04195 PF02910 Fumarate reductase flavoprotein C-term LN249_04195 PF00890 FAD binding domain LN249_04200 PF13085 2Fe-2S iron-sulfur cluster binding domain LN249_04205 PF16078 2-oxoglutarate dehydrogenase N-terminus LN249_04205 PF00676 Dehydrogenase E1 component LN249_04205 PF16870 2-oxoglutarate dehydrogenase C-terminal LN249_04205 PF02779 Transketolase, pyrimidine binding domain LN249_04210 PF02817 e3 binding domain LN249_04210 PF00364 Biotin-requiring enzyme LN249_04210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LN249_04215 PF08442 ATP-grasp domain LN249_04215 PF00549 CoA-ligase LN249_04220 PF02629 CoA binding domain LN249_04220 PF00549 CoA-ligase LN249_04225 PF00950 ABC 3 transport family LN249_04230 PF00005 ABC transporter LN249_04235 PF01297 Zinc-uptake complex component A periplasmic LN249_04240 PF02311 AraC-like ligand binding domain LN249_04240 PF12833 Helix-turn-helix domain LN249_04245 PF04023 FeoA domain LN249_04250 PF07664 Ferrous iron transport protein B C terminus LN249_04250 PF17910 FeoB cytosolic helical domain LN249_04250 PF02421 Ferrous iron transport protein B LN249_04250 PF07670 Nucleoside recognition LN249_04265 PF00750 tRNA synthetases class I (R) LN249_04265 PF03485 Arginyl tRNA synthetase N terminal domain LN249_04265 PF05746 DALR anticodon binding domain LN249_04280 PF00089 Trypsin LN249_04285 PF01842 ACT domain LN249_04285 PF00551 Formyl transferase LN249_04290 PF13307 Helicase C-terminal domain LN249_04290 PF04851 Type III restriction enzyme, res subunit LN249_04295 PF00814 Glycoprotease family LN249_04305 PF03843 Outer membrane lipoprotein Slp family LN249_04310 PF00561 alpha/beta hydrolase fold LN249_04315 PF00501 AMP-binding enzyme LN249_04315 PF13193 AMP-binding enzyme C-terminal domain LN249_04320 PF01612 3'-5' exonuclease LN249_04320 PF00570 HRDC domain LN249_04325 PF03776 Septum formation topological specificity factor MinE LN249_04330 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LN249_04335 PF03775 Septum formation inhibitor MinC, C-terminal domain LN249_04335 PF05209 Septum formation inhibitor MinC, N-terminal domain LN249_04340 PF05166 YcgL domain LN249_04345 PF13406 Transglycosylase SLT domain LN249_04350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_04350 PF03466 LysR substrate binding domain LN249_04355 PF07670 Nucleoside recognition LN249_04355 PF07662 Na+ dependent nucleoside transporter C-terminus LN249_04355 PF01773 Na+ dependent nucleoside transporter N-terminus LN249_04360 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LN249_04360 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LN249_04415 PF02801 Beta-ketoacyl synthase, C-terminal domain LN249_04415 PF00109 Beta-ketoacyl synthase, N-terminal domain LN249_04425 PF07977 FabA-like domain LN249_04430 PF00109 Beta-ketoacyl synthase, N-terminal domain LN249_04430 PF02801 Beta-ketoacyl synthase, C-terminal domain LN249_04455 PF00221 Aromatic amino acid lyase LN249_04460 PF00535 Glycosyl transferase family 2 LN249_04465 PF07977 FabA-like domain LN249_04480 PF00550 Phosphopantetheine attachment site LN249_04485 PF00550 Phosphopantetheine attachment site LN249_04510 PF04820 Tryptophan halogenase LN249_04520 PF00571 CBS domain LN249_04520 PF03471 Transporter associated domain LN249_04520 PF01595 Cyclin M transmembrane N-terminal domain LN249_04525 PF00270 DEAD/DEAH box helicase LN249_04525 PF00271 Helicase conserved C-terminal domain LN249_04530 PF02080 TrkA-C domain LN249_04530 PF02254 TrkA-N domain LN249_04535 PF02386 Cation transport protein LN249_04550 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LN249_04555 PF03480 Bacterial extracellular solute-binding protein, family 7 LN249_04560 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LN249_04565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LN249_04575 PF02954 Bacterial regulatory protein, Fis family LN249_04575 PF00072 Response regulator receiver domain LN249_04575 PF00158 Sigma-54 interaction domain LN249_04580 PF02743 Cache domain LN249_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_04580 PF00512 His Kinase A (phospho-acceptor) domain LN249_04590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LN249_04590 PF05698 Bacterial trigger factor protein (TF) C-terminus LN249_04590 PF05697 Bacterial trigger factor protein (TF) LN249_04595 PF00574 Clp protease LN249_04600 PF07724 AAA domain (Cdc48 subfamily) LN249_04600 PF10431 C-terminal, D2-small domain, of ClpB protein LN249_04600 PF06689 ClpX C4-type zinc finger LN249_04605 PF00004 ATPase family associated with various cellular activities (AAA) LN249_04605 PF05362 Lon protease (S16) C-terminal proteolytic domain LN249_04605 PF02190 ATP-dependent protease La (LON) substrate-binding domain LN249_04610 PF00216 Bacterial DNA-binding protein LN249_04615 PF13145 PPIC-type PPIASE domain LN249_04635 PF01966 HD domain LN249_04635 PF13286 Phosphohydrolase-associated domain LN249_04645 PF00155 Aminotransferase class I and II LN249_04650 PF00425 chorismate binding enzyme LN249_04655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LN249_04655 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LN249_04655 PF16582 Middle domain of thiamine pyrophosphate LN249_04660 PF12697 Alpha/beta hydrolase family LN249_04665 PF00378 Enoyl-CoA hydratase/isomerase LN249_04670 PF13378 Enolase C-terminal domain-like LN249_04675 PF00501 AMP-binding enzyme LN249_04675 PF13193 AMP-binding enzyme C-terminal domain LN249_04685 PF03601 Conserved hypothetical protein 698 LN249_04690 PF07690 Major Facilitator Superfamily LN249_04735 PF00529 HlyD membrane-fusion protein of T1SS LN249_04735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_04740 PF00873 AcrB/AcrD/AcrF family LN249_04760 PF00291 Pyridoxal-phosphate dependent enzyme LN249_04765 PF13404 AsnC-type helix-turn-helix domain LN249_04765 PF01037 Lrp/AsnC ligand binding domain LN249_04780 PF09619 Type III secretion system lipoprotein chaperone (YscW) LN249_04785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LN249_04795 PF00990 Diguanylate cyclase, GGDEF domain LN249_04795 PF00072 Response regulator receiver domain LN249_04805 PF00588 SpoU rRNA Methylase family LN249_04805 PF08032 RNA 2'-O ribose methyltransferase substrate binding LN249_04815 PF00403 Heavy-metal-associated domain LN249_04820 PF01048 Phosphorylase superfamily LN249_04830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_04830 PF00672 HAMP domain LN249_04835 PF01230 HIT domain LN249_04850 PF13036 Peptidoglycan-synthase activator LpoB LN249_04850 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LN249_04855 PF01636 Phosphotransferase enzyme family LN249_04860 PF05728 Uncharacterised protein family (UPF0227) LN249_04865 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_04880 PF00271 Helicase conserved C-terminal domain LN249_04880 PF00270 DEAD/DEAH box helicase LN249_04880 PF17757 UvrB interaction domain LN249_04880 PF02559 CarD-like/TRCF domain LN249_04880 PF03461 TRCF domain LN249_04890 PF02687 FtsX-like permease family LN249_04890 PF12704 MacB-like periplasmic core domain LN249_04895 PF00005 ABC transporter LN249_04900 PF12704 MacB-like periplasmic core domain LN249_04900 PF02687 FtsX-like permease family LN249_04910 PF03772 Competence protein LN249_04910 PF00753 Metallo-beta-lactamase superfamily LN249_04910 PF13567 Domain of unknown function (DUF4131) LN249_04915 PF00005 ABC transporter LN249_04915 PF00664 ABC transporter transmembrane region LN249_04920 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LN249_04925 PF03966 Trm112p-like protein LN249_04930 PF02348 Cytidylyltransferase LN249_04935 PF04293 SpoVR like protein LN249_04940 PF04285 Protein of unknown function (DUF444) LN249_04945 PF08298 PrkA AAA domain LN249_04945 PF06798 PrkA serine protein kinase C-terminal domain LN249_04950 PF03887 YfbU domain LN249_04960 PF04055 Radical SAM superfamily LN249_04970 PF01228 Glycine radical LN249_04970 PF02901 Pyruvate formate lyase-like LN249_04985 PF00005 ABC transporter LN249_04990 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_04995 PF00528 Binding-protein-dependent transport system inner membrane component LN249_05000 PF00528 Binding-protein-dependent transport system inner membrane component LN249_05010 PF03372 Endonuclease/Exonuclease/phosphatase family LN249_05015 PF10689 Protein of unknown function (DUF2496) LN249_05020 PF07445 Primosomal replication protein priC LN249_05025 PF01925 Sulfite exporter TauE/SafE LN249_05030 PF13307 Helicase C-terminal domain LN249_05030 PF06733 DEAD_2 LN249_05040 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LN249_05045 PF00849 RNA pseudouridylate synthase LN249_05050 PF03971 Monomeric isocitrate dehydrogenase LN249_05055 PF00313 'Cold-shock' DNA-binding domain LN249_05060 PF02617 ATP-dependent Clp protease adaptor protein ClpS LN249_05065 PF07724 AAA domain (Cdc48 subfamily) LN249_05065 PF10431 C-terminal, D2-small domain, of ClpB protein LN249_05065 PF02861 Clp amino terminal domain, pathogenicity island component LN249_05065 PF17871 AAA lid domain LN249_05065 PF00004 ATPase family associated with various cellular activities (AAA) LN249_05070 PF01176 Translation initiation factor 1A / IF-1 LN249_05075 PF04376 Arginine-tRNA-protein transferase, N terminus LN249_05075 PF04377 Arginine-tRNA-protein transferase, C terminus LN249_05080 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LN249_05090 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LN249_05095 PF10692 Protein of unknown function (DUF2498) LN249_05100 PF08272 Topoisomerase I zinc-ribbon-like LN249_05100 PF01131 DNA topoisomerase LN249_05100 PF01751 Toprim domain LN249_05100 PF01396 Topoisomerase DNA binding C4 zinc finger LN249_05105 PF00483 Nucleotidyl transferase LN249_05110 PF08323 Starch synthase catalytic domain LN249_05110 PF00534 Glycosyl transferases group 1 LN249_05130 PF04993 TfoX N-terminal domain LN249_05130 PF04994 TfoX C-terminal domain LN249_05135 PF00356 Bacterial regulatory proteins, lacI family LN249_05140 PF02613 Nitrate reductase delta subunit LN249_05145 PF00486 Transcriptional regulatory protein, C terminal LN249_05145 PF00072 Response regulator receiver domain LN249_05150 PF02698 DUF218 domain LN249_05155 PF13847 Methyltransferase domain LN249_05160 PF03882 MukF winged-helix domain LN249_05160 PF17193 MukF C-terminal domain LN249_05160 PF17192 MukF middle domain LN249_05165 PF04288 MukE-like family LN249_05170 PF04310 MukB N-terminal LN249_05170 PF16330 MukB hinge domain LN249_05190 PF18030 RimK PreATP-grasp domain LN249_05190 PF08443 RimK-like ATP-grasp domain LN249_05195 PF08003 Protein of unknown function (DUF1698) LN249_05200 PF13649 Methyltransferase domain LN249_05205 PF01904 Protein of unknown function DUF72 LN249_05210 PF00152 tRNA synthetases class II (D, K and N) LN249_05210 PF02938 GAD domain LN249_05210 PF01336 OB-fold nucleic acid binding domain LN249_05215 PF01709 Transcriptional regulator LN249_05220 PF02075 Crossover junction endodeoxyribonuclease RuvC LN249_05225 PF01330 RuvA N terminal domain LN249_05225 PF07499 RuvA, C-terminal domain LN249_05230 PF05491 RuvB C-terminal winged helix domain LN249_05230 PF17864 RuvB AAA lid domain LN249_05230 PF05496 Holliday junction DNA helicase RuvB P-loop domain LN249_05235 PF01654 Cytochrome bd terminal oxidase subunit I LN249_05240 PF02322 Cytochrome bd terminal oxidase subunit II LN249_05245 PF08173 Membrane bound YbgT-like protein LN249_05255 PF03061 Thioesterase superfamily LN249_05260 PF01618 MotA/TolQ/ExbB proton channel family LN249_05265 PF02472 Biopolymer transport protein ExbD/TolR LN249_05275 PF04052 TolB amino-terminal domain LN249_05275 PF07676 WD40-like Beta Propeller Repeat LN249_05280 PF00691 OmpA family LN249_05285 PF13174 Tetratricopeptide repeat LN249_05285 PF16331 TolA binding protein trimerisation LN249_05290 PF02445 Quinolinate synthetase A protein LN249_05300 PF03994 Domain of Unknown Function (DUF350) LN249_05310 PF03738 Glutathionylspermidine synthase preATP-grasp LN249_05320 PF00512 His Kinase A (phospho-acceptor) domain LN249_05320 PF00072 Response regulator receiver domain LN249_05320 PF09308 LuxQ, periplasmic LN249_05320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_05325 PF06610 L-alanine exporter LN249_05340 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LN249_05360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_05360 PF00672 HAMP domain LN249_05365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_05365 PF00529 HlyD membrane-fusion protein of T1SS LN249_05370 PF00873 AcrB/AcrD/AcrF family LN249_05385 PF00579 tRNA synthetases class I (W and Y) LN249_05395 PF03372 Endonuclease/Exonuclease/phosphatase family LN249_05405 PF17200 Single Cache domain 2 LN249_05405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_05405 PF00672 HAMP domain LN249_05410 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LN249_05420 PF03466 LysR substrate binding domain LN249_05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_05430 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LN249_05430 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LN249_05435 PF01037 Lrp/AsnC ligand binding domain LN249_05445 PF03548 Outer membrane lipoprotein carrier protein LolA LN249_05450 PF00004 ATPase family associated with various cellular activities (AAA) LN249_05450 PF16193 AAA C-terminal domain LN249_05450 PF12002 MgsA AAA+ ATPase C terminal LN249_05455 PF02403 Seryl-tRNA synthetase N-terminal domain LN249_05455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LN249_05475 PF00202 Aminotransferase class-III LN249_05480 PF06968 Biotin and Thiamin Synthesis associated domain LN249_05480 PF04055 Radical SAM superfamily LN249_05485 PF00155 Aminotransferase class I and II LN249_05490 PF08241 Methyltransferase domain LN249_05490 PF12697 Alpha/beta hydrolase family LN249_05505 PF01435 Peptidase family M48 LN249_05515 PF00106 short chain dehydrogenase LN249_05540 PF16036 Chalcone isomerase-like LN249_05550 PF08328 Adenylosuccinate lyase C-terminal LN249_05550 PF00206 Lyase LN249_05555 PF04356 Protein of unknown function (DUF489) LN249_05570 PF00294 pfkB family carbohydrate kinase LN249_05575 PF00816 H-NS histone family LN249_05580 PF03553 Na+/H+ antiporter family LN249_05585 PF00072 Response regulator receiver domain LN249_05585 PF00158 Sigma-54 interaction domain LN249_05585 PF02954 Bacterial regulatory protein, Fis family LN249_05590 PF01634 ATP phosphoribosyltransferase LN249_05590 PF08029 HisG, C-terminal domain LN249_05595 PF00815 Histidinol dehydrogenase LN249_05600 PF00155 Aminotransferase class I and II LN249_05605 PF00475 Imidazoleglycerol-phosphate dehydratase LN249_05605 PF08645 Polynucleotide kinase 3 phosphatase LN249_05610 PF00117 Glutamine amidotransferase class-I LN249_05615 PF00977 Histidine biosynthesis protein LN249_05620 PF00977 Histidine biosynthesis protein LN249_05625 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LN249_05625 PF01502 Phosphoribosyl-AMP cyclohydrolase LN249_05630 PF02810 SEC-C motif LN249_05635 PF00563 EAL domain LN249_05635 PF08668 HDOD domain LN249_05640 PF00149 Calcineurin-like phosphoesterase LN249_05645 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LN249_05650 PF09190 DALR domain LN249_05650 PF01406 tRNA synthetases class I (C) catalytic domain LN249_05655 PF00265 Thymidine kinase LN249_05660 PF02698 DUF218 domain LN249_05685 PF01226 Formate/nitrite transporter LN249_05695 PF03649 Uncharacterised protein family (UPF0014) LN249_05700 PF06796 Periplasmic nitrate reductase protein NapE LN249_05705 PF03264 NapC/NirT cytochrome c family, N-terminal region LN249_05710 PF00384 Molybdopterin oxidoreductase LN249_05710 PF18364 Molybdopterin oxidoreductase N-terminal domain LN249_05710 PF01568 Molydopterin dinucleotide binding domain LN249_05715 PF16874 Glycosyl hydrolase family 36 C-terminal domain LN249_05715 PF16875 Glycosyl hydrolase family 36 N-terminal domain LN249_05725 PF02833 DHHA2 domain LN249_05725 PF01368 DHH family LN249_05735 PF00005 ABC transporter LN249_05740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_05740 PF00005 ABC transporter LN249_05745 PF00528 Binding-protein-dependent transport system inner membrane component LN249_05745 PF12911 N-terminal TM domain of oligopeptide transport permease C LN249_05750 PF00528 Binding-protein-dependent transport system inner membrane component LN249_05755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_05760 PF00158 Sigma-54 interaction domain LN249_05760 PF02954 Bacterial regulatory protein, Fis family LN249_05765 PF04012 PspA/IM30 family LN249_05770 PF06667 Phage shock protein B LN249_05775 PF04024 PspC domain LN249_05790 PF00873 AcrB/AcrD/AcrF family LN249_05795 PF03352 Methyladenine glycosylase LN249_05800 PF03280 Proteobacterial lipase chaperone protein LN249_05805 PF00561 alpha/beta hydrolase fold LN249_05810 PF01053 Cys/Met metabolism PLP-dependent enzyme LN249_05815 PF13091 PLD-like domain LN249_05815 PF13396 Phospholipase_D-nuclease N-terminal LN249_05820 PF00209 Sodium:neurotransmitter symporter family LN249_05825 PF00849 RNA pseudouridylate synthase LN249_05835 PF00970 Oxidoreductase FAD-binding domain LN249_05835 PF00111 2Fe-2S iron-sulfur cluster binding domain LN249_05835 PF00175 Oxidoreductase NAD-binding domain LN249_05840 PF03063 Prismane/CO dehydrogenase family LN249_05845 PF01590 GAF domain LN249_05845 PF00158 Sigma-54 interaction domain LN249_05855 PF01066 CDP-alcohol phosphatidyltransferase LN249_05860 PF00005 ABC transporter LN249_05865 PF00528 Binding-protein-dependent transport system inner membrane component LN249_05870 PF13416 Bacterial extracellular solute-binding protein LN249_05880 PF06945 Protein of unknown function (DUF1289) LN249_05890 PF00149 Calcineurin-like phosphoesterase LN249_05890 PF02872 5'-nucleotidase, C-terminal domain LN249_05900 PF01386 Ribosomal L25p family LN249_05905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_05910 PF00072 Response regulator receiver domain LN249_05910 PF00486 Transcriptional regulatory protein, C terminal LN249_05920 PF00271 Helicase conserved C-terminal domain LN249_05920 PF04851 Type III restriction enzyme, res subunit LN249_05925 PF00849 RNA pseudouridylate synthase LN249_05925 PF01479 S4 domain LN249_05930 PF07690 Major Facilitator Superfamily LN249_05945 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LN249_05965 PF03264 NapC/NirT cytochrome c family, N-terminal region LN249_05970 PF13460 NAD(P)H-binding LN249_05970 PF11066 Protein of unknown function (DUF2867) LN249_05975 PF01554 MatE LN249_05980 PF00005 ABC transporter LN249_05995 PF06965 Na+/H+ antiporter 1 LN249_06000 PF00440 Bacterial regulatory proteins, tetR family LN249_06000 PF16295 Tetracyclin repressor-like, C-terminal domain LN249_06005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LN249_06005 PF02770 Acyl-CoA dehydrogenase, middle domain LN249_06005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LN249_06005 PF09317 Domain of unknown function (DUF1974) LN249_06010 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LN249_06010 PF12241 Trans-2-enoyl-CoA reductase catalytic region LN249_06010 PF07055 Enoyl reductase FAD binding domain LN249_06015 PF06826 Predicted Permease Membrane Region LN249_06015 PF02080 TrkA-C domain LN249_06020 PF00462 Glutaredoxin LN249_06025 PF00465 Iron-containing alcohol dehydrogenase LN249_06030 PF01418 Helix-turn-helix domain, rpiR family LN249_06030 PF01380 SIS domain LN249_06035 PF00282 Pyridoxal-dependent decarboxylase conserved domain LN249_06045 PF03956 Lysine exporter LysO LN249_06055 PF04994 TfoX C-terminal domain LN249_06055 PF04993 TfoX N-terminal domain LN249_06070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_06070 PF00512 His Kinase A (phospho-acceptor) domain LN249_06070 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_06080 PF00266 Aminotransferase class-V LN249_06085 PF00291 Pyridoxal-phosphate dependent enzyme LN249_06090 PF00664 ABC transporter transmembrane region LN249_06090 PF00005 ABC transporter LN249_06095 PF00664 ABC transporter transmembrane region LN249_06095 PF00005 ABC transporter LN249_06100 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_06110 PF00266 Aminotransferase class-V LN249_06120 PF00990 Diguanylate cyclase, GGDEF domain LN249_06120 PF00072 Response regulator receiver domain LN249_06125 PF00939 Sodium:sulfate symporter transmembrane region LN249_06130 PF02698 DUF218 domain LN249_06140 PF00271 Helicase conserved C-terminal domain LN249_06140 PF08482 ATP-dependent helicase C-terminal LN249_06140 PF00270 DEAD/DEAH box helicase LN249_06140 PF04408 Helicase associated domain (HA2) LN249_06150 PF09423 PhoD-like phosphatase LN249_06150 PF16655 PhoD-like phosphatase, N-terminal domain LN249_06155 PF01259 SAICAR synthetase LN249_06175 PF00691 OmpA family LN249_06175 PF05736 OprF membrane domain LN249_06190 PF02913 FAD linked oxidases, C-terminal domain LN249_06190 PF01565 FAD binding domain LN249_06190 PF13183 4Fe-4S dicluster domain LN249_06205 PF00221 Aromatic amino acid lyase LN249_06210 PF01175 Urocanase Rossmann-like domain LN249_06210 PF17392 Urocanase C-terminal domain LN249_06210 PF17391 Urocanase N-terminal domain LN249_06215 PF00491 Arginase family LN249_06220 PF01979 Amidohydrolase family LN249_06225 PF07702 UTRA domain LN249_06225 PF00392 Bacterial regulatory proteins, gntR family LN249_06240 PF03129 Anticodon binding domain LN249_06240 PF02824 TGS domain LN249_06240 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LN249_06240 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LN249_06245 PF00707 Translation initiation factor IF-3, C-terminal domain LN249_06245 PF05198 Translation initiation factor IF-3, N-terminal domain LN249_06250 PF01632 Ribosomal protein L35 LN249_06255 PF00453 Ribosomal protein L20 LN249_06260 PF01906 Putative heavy-metal-binding LN249_06290 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LN249_06290 PF01409 tRNA synthetases class II core domain (F) LN249_06295 PF03484 tRNA synthetase B5 domain LN249_06295 PF03147 Ferredoxin-fold anticodon binding domain LN249_06295 PF01588 Putative tRNA binding domain LN249_06295 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LN249_06295 PF03483 B3/4 domain LN249_06305 PF00216 Bacterial DNA-binding protein LN249_06315 PF05724 Thiopurine S-methyltransferase (TPMT) LN249_06320 PF02222 ATP-grasp domain LN249_06325 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LN249_06325 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LN249_06330 PF04172 LrgB-like family LN249_06335 PF03788 LrgA family LN249_06340 PF08411 Exonuclease C-terminal LN249_06340 PF00929 Exonuclease LN249_06345 PF00375 Sodium:dicarboxylate symporter family LN249_06350 PF13460 NAD(P)H-binding LN249_06355 PF02277 Phosphoribosyltransferase LN249_06360 PF02654 Cobalamin-5-phosphate synthase LN249_06365 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LN249_06380 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LN249_06385 PF01032 FecCD transport family LN249_06390 PF00005 ABC transporter LN249_06410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_06410 PF03466 LysR substrate binding domain LN249_06420 PF01863 Protein of unknown function DUF45 LN249_06425 PF05971 RNA methyltransferase LN249_06445 PF00392 Bacterial regulatory proteins, gntR family LN249_06450 PF00171 Aldehyde dehydrogenase family LN249_06455 PF05544 Proline racemase LN249_06460 PF01266 FAD dependent oxidoreductase LN249_06460 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LN249_06470 PF02423 Ornithine cyclodeaminase/mu-crystallin family LN249_06475 PF00701 Dihydrodipicolinate synthetase family LN249_06480 PF00005 ABC transporter LN249_06480 PF08402 TOBE domain LN249_06485 PF00528 Binding-protein-dependent transport system inner membrane component LN249_06490 PF00528 Binding-protein-dependent transport system inner membrane component LN249_06505 PF08453 Peptidase family M9 N-terminal LN249_06505 PF01752 Collagenase LN249_06515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_06515 PF00005 ABC transporter LN249_06520 PF00005 ABC transporter LN249_06520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_06525 PF12911 N-terminal TM domain of oligopeptide transport permease C LN249_06525 PF00528 Binding-protein-dependent transport system inner membrane component LN249_06530 PF00528 Binding-protein-dependent transport system inner membrane component LN249_06535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_06540 PF07687 Peptidase dimerisation domain LN249_06540 PF01546 Peptidase family M20/M25/M40 LN249_06545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_06550 PF04209 homogentisate 1,2-dioxygenase LN249_06560 PF14497 Glutathione S-transferase, C-terminal domain LN249_06560 PF02798 Glutathione S-transferase, N-terminal domain LN249_06595 PF12792 CSS motif domain associated with EAL LN249_06595 PF00563 EAL domain LN249_06605 PF01047 MarR family LN249_06610 PF04237 YjbR LN249_06625 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_06625 PF12464 Maltose acetyltransferase LN249_06640 PF00672 HAMP domain LN249_06640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_06640 PF00512 His Kinase A (phospho-acceptor) domain LN249_06640 PF01627 Hpt domain LN249_06640 PF00072 Response regulator receiver domain LN249_06640 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LN249_06645 PF00563 EAL domain LN249_06645 PF00990 Diguanylate cyclase, GGDEF domain LN249_06645 PF03707 Bacterial signalling protein N terminal repeat LN249_06660 PF04204 Homoserine O-succinyltransferase LN249_06670 PF00893 Small Multidrug Resistance protein LN249_06675 PF13520 Amino acid permease LN249_06680 PF03279 Bacterial lipid A biosynthesis acyltransferase LN249_06685 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LN249_06690 PF01810 LysE type translocator LN249_06700 PF01235 Sodium:alanine symporter family LN249_06725 PF00884 Sulfatase LN249_06730 PF00512 His Kinase A (phospho-acceptor) domain LN249_06730 PF08521 Two-component sensor kinase N-terminal LN249_06730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_06735 PF00072 Response regulator receiver domain LN249_06735 PF00486 Transcriptional regulatory protein, C terminal LN249_06755 PF00501 AMP-binding enzyme LN249_06765 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LN249_06770 PF00528 Binding-protein-dependent transport system inner membrane component LN249_06775 PF00005 ABC transporter LN249_06775 PF00571 CBS domain LN249_06795 PF02028 BCCT, betaine/carnitine/choline family transporter LN249_06800 PF00583 Acetyltransferase (GNAT) family LN249_06805 PF00202 Aminotransferase class-III LN249_06810 PF06339 Ectoine synthase LN249_06815 PF00696 Amino acid kinase family LN249_06815 PF13840 ACT domain LN249_06820 PF00884 Sulfatase LN249_06830 PF03781 Sulfatase-modifying factor enzyme 1 LN249_06835 PF13186 Iron-sulfur cluster-binding domain LN249_06835 PF04055 Radical SAM superfamily LN249_06850 PF00455 DeoR C terminal sensor domain LN249_06850 PF08220 DeoR-like helix-turn-helix domain LN249_06855 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LN249_06855 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LN249_06860 PF03928 Haem-degrading LN249_06885 PF00939 Sodium:sulfate symporter transmembrane region LN249_06890 PF00512 His Kinase A (phospho-acceptor) domain LN249_06890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_06895 PF00158 Sigma-54 interaction domain LN249_06895 PF00072 Response regulator receiver domain LN249_06895 PF02954 Bacterial regulatory protein, Fis family LN249_06900 PF00563 EAL domain LN249_06900 PF03707 Bacterial signalling protein N terminal repeat LN249_06900 PF00990 Diguanylate cyclase, GGDEF domain LN249_06905 PF01966 HD domain LN249_06905 PF11871 Domain of unknown function (DUF3391) LN249_06910 PF01810 LysE type translocator LN249_06915 PF11230 Protein of unknown function (DUF3029) LN249_06920 PF04055 Radical SAM superfamily LN249_06930 PF03741 Integral membrane protein TerC family LN249_06940 PF01966 HD domain LN249_06945 PF00465 Iron-containing alcohol dehydrogenase LN249_06950 PF03222 Tryptophan/tyrosine permease family LN249_06965 PF00005 ABC transporter LN249_06970 PF01497 Periplasmic binding protein LN249_06975 PF01032 FecCD transport family LN249_06980 PF07715 TonB-dependent Receptor Plug Domain LN249_06980 PF00593 TonB dependent receptor LN249_06990 PF00664 ABC transporter transmembrane region LN249_06990 PF00005 ABC transporter LN249_06995 PF00664 ABC transporter transmembrane region LN249_06995 PF00005 ABC transporter LN249_07000 PF07963 Prokaryotic N-terminal methylation motif LN249_07020 PF00012 Hsp70 protein LN249_07025 PF00012 Hsp70 protein LN249_07035 PF00990 Diguanylate cyclase, GGDEF domain LN249_07070 PF02525 Flavodoxin-like fold LN249_07075 PF00270 DEAD/DEAH box helicase LN249_07075 PF11898 Domain of unknown function (DUF3418) LN249_07075 PF04408 Helicase associated domain (HA2) LN249_07075 PF00271 Helicase conserved C-terminal domain LN249_07075 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LN249_07090 PF02028 BCCT, betaine/carnitine/choline family transporter LN249_07100 PF02397 Bacterial sugar transferase LN249_07110 PF13439 Glycosyltransferase Family 4 LN249_07110 PF00534 Glycosyl transferases group 1 LN249_07140 PF13439 Glycosyltransferase Family 4 LN249_07140 PF00534 Glycosyl transferases group 1 LN249_07145 PF13439 Glycosyltransferase Family 4 LN249_07145 PF00534 Glycosyl transferases group 1 LN249_07150 PF02954 Bacterial regulatory protein, Fis family LN249_07150 PF00072 Response regulator receiver domain LN249_07150 PF00158 Sigma-54 interaction domain LN249_07165 PF10531 SLBB domain LN249_07165 PF02563 Polysaccharide biosynthesis/export protein LN249_07175 PF01740 STAS domain LN249_07180 PF14743 DNA ligase OB-like domain LN249_07180 PF01068 ATP dependent DNA ligase domain LN249_07190 PF01554 MatE LN249_07195 PF00677 Lumazine binding domain LN249_07205 PF03881 Fructosamine kinase LN249_07210 PF01339 CheB methylesterase LN249_07210 PF00072 Response regulator receiver domain LN249_07215 PF05230 MASE2 domain LN249_07215 PF00990 Diguanylate cyclase, GGDEF domain LN249_07225 PF00877 NlpC/P60 family LN249_07230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_07230 PF00672 HAMP domain LN249_07230 PF17202 Single cache domain 3 LN249_07260 PF03942 DTW domain LN249_07265 PF00480 ROK family LN249_07275 PF03454 MoeA C-terminal region (domain IV) LN249_07275 PF00994 Probable molybdopterin binding domain LN249_07275 PF03453 MoeA N-terminal region (domain I and II) LN249_07280 PF12804 MobA-like NTP transferase domain LN249_07285 PF00005 ABC transporter LN249_07285 PF08402 TOBE domain LN249_07290 PF00528 Binding-protein-dependent transport system inner membrane component LN249_07295 PF12849 PBP superfamily domain LN249_07300 PF02954 Bacterial regulatory protein, Fis family LN249_07300 PF00072 Response regulator receiver domain LN249_07300 PF00158 Sigma-54 interaction domain LN249_07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_07305 PF00512 His Kinase A (phospho-acceptor) domain LN249_07310 PF00005 ABC transporter LN249_07310 PF12848 ABC transporter LN249_07315 PF02634 FdhD/NarQ family LN249_07335 PF02613 Nitrate reductase delta subunit LN249_07345 PF01568 Molydopterin dinucleotide binding domain LN249_07345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LN249_07345 PF00384 Molybdopterin oxidoreductase LN249_07350 PF13247 4Fe-4S dicluster domain LN249_07365 PF03527 RHS protein LN249_07365 PF05593 RHS Repeat LN249_07375 PF00909 Ammonium Transporter Family LN249_07385 PF02146 Sir2 family LN249_07390 PF13416 Bacterial extracellular solute-binding protein LN249_07395 PF13416 Bacterial extracellular solute-binding protein LN249_07400 PF00528 Binding-protein-dependent transport system inner membrane component LN249_07405 PF00528 Binding-protein-dependent transport system inner membrane component LN249_07410 PF00005 ABC transporter LN249_07410 PF08402 TOBE domain LN249_07430 PF01171 PP-loop family LN249_07435 PF00582 Universal stress protein family LN249_07440 PF13545 Crp-like helix-turn-helix domain LN249_07440 PF00027 Cyclic nucleotide-binding domain LN249_07455 PF00403 Heavy-metal-associated domain LN249_07465 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LN249_07465 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LN249_07480 PF00115 Cytochrome C and Quinol oxidase polypeptide I LN249_07495 PF09308 LuxQ, periplasmic LN249_07495 PF00072 Response regulator receiver domain LN249_07495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_07495 PF00512 His Kinase A (phospho-acceptor) domain LN249_07515 PF00005 ABC transporter LN249_07605 PF05707 Zonular occludens toxin (Zot) LN249_07650 PF17414 MatP C-terminal ribbon-helix-helix domain LN249_07650 PF06303 MatP N-terminal domain LN249_07655 PF05362 Lon protease (S16) C-terminal proteolytic domain LN249_07655 PF13654 AAA domain LN249_07660 PF07977 FabA-like domain LN249_07665 PF04957 Ribosome modulation factor LN249_07675 PF12848 ABC transporter LN249_07675 PF16326 ABC transporter C-terminal domain LN249_07675 PF00005 ABC transporter LN249_07685 PF01170 Putative RNA methylase family UPF0020 LN249_07685 PF02926 THUMP domain LN249_07685 PF10672 S-adenosylmethionine-dependent methyltransferase LN249_07690 PF07126 Cell-division protein ZapC LN249_07695 PF01180 Dihydroorotate dehydrogenase LN249_07700 PF05088 Bacterial NAD-glutamate dehydrogenase LN249_07710 PF01433 Peptidase family M1 domain LN249_07710 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LN249_07710 PF11940 Domain of unknown function (DUF3458) Ig-like fold LN249_07720 PF17804 Tail specific protease N-terminal domain LN249_07720 PF03572 Peptidase family S41 LN249_07720 PF00595 PDZ domain LN249_07720 PF11818 C-terminal domain of tail specific protease (DUF3340) LN249_07725 PF04352 ProQ/FINO family LN249_07725 PF17516 ProQ C-terminal domain LN249_07730 PF13185 GAF domain LN249_07735 PF00664 ABC transporter transmembrane region LN249_07735 PF00005 ABC transporter LN249_07740 PF04403 Paraquat-inducible protein A LN249_07745 PF02470 MlaD protein LN249_07750 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LN249_07750 PF01189 16S rRNA methyltransferase RsmB/F LN249_07750 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LN249_07770 PF00793 DAHP synthetase I family LN249_07775 PF04461 Protein of unknown function (DUF520) LN249_07780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LN249_07780 PF14824 Sirohaem biosynthesis protein central LN249_07780 PF10414 Sirohaem synthase dimerisation region LN249_07785 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_07795 PF00528 Binding-protein-dependent transport system inner membrane component LN249_07800 PF00528 Binding-protein-dependent transport system inner membrane component LN249_07805 PF00005 ABC transporter LN249_07810 PF01027 Inhibitor of apoptosis-promoting Bax1 LN249_07820 PF04358 DsrC like protein LN249_07825 PF00708 Acylphosphatase LN249_07830 PF02743 Cache domain LN249_07830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_07830 PF00672 HAMP domain LN249_07835 PF17785 PUA-like domain LN249_07835 PF10672 S-adenosylmethionine-dependent methyltransferase LN249_07850 PF00691 OmpA family LN249_07850 PF05736 OprF membrane domain LN249_07870 PF05736 OprF membrane domain LN249_07870 PF00691 OmpA family LN249_07880 PF00990 Diguanylate cyclase, GGDEF domain LN249_07880 PF07694 5TMR of 5TMR-LYT LN249_07885 PF06508 Queuosine biosynthesis protein QueC LN249_07890 PF04055 Radical SAM superfamily LN249_07905 PF00089 Trypsin LN249_07915 PF13193 AMP-binding enzyme C-terminal domain LN249_07915 PF00501 AMP-binding enzyme LN249_07915 PF16177 Acetyl-coenzyme A synthetase N-terminus LN249_07920 PF04303 PrpF protein LN249_07925 PF00330 Aconitase family (aconitate hydratase) LN249_07925 PF00694 Aconitase C-terminal domain LN249_07930 PF00285 Citrate synthase, C-terminal domain LN249_07960 PF01970 Tripartite tricarboxylate transporter TctA family LN249_07970 PF01925 Sulfite exporter TauE/SafE LN249_07975 PF16868 NMT1-like family LN249_07985 PF05844 YopD protein LN249_07995 PF07720 Tetratricopeptide repeat LN249_08010 PF09621 Type III secretion system regulator (LcrR) LN249_08015 PF00771 FHIPEP family LN249_08035 PF09059 TyeA LN249_08045 PF18269 T3SS EscN ATPase C-terminal domain LN249_08045 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LN249_08045 PF02874 ATP synthase alpha/beta family, beta-barrel domain LN249_08060 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LN249_08065 PF00813 FliP family LN249_08070 PF01313 Bacterial export proteins, family 3 LN249_08075 PF01311 Bacterial export proteins, family 1 LN249_08080 PF01312 FlhB HrpN YscU SpaS Family LN249_08085 PF00440 Bacterial regulatory proteins, tetR family LN249_08085 PF08360 QacR-like protein, C-terminal region LN249_08095 PF13533 Biotin-lipoyl like LN249_08140 PF02661 Fic/DOC family LN249_08150 PF02108 Flagellar assembly protein FliH LN249_08160 PF01514 Secretory protein of YscJ/FliF family LN249_08165 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI LN249_08175 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) LN249_08180 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LN249_08190 PF16693 Inner membrane component of T3SS, periplasmic domain LN249_08190 PF16697 Inner membrane component of T3SS, cytoplasmic domain LN249_08195 PF03958 Bacterial type II/III secretion system short domain LN249_08195 PF00263 Bacterial type II and III secretion system protein LN249_08210 PF12833 Helix-turn-helix domain LN249_08230 PF00171 Aldehyde dehydrogenase family LN249_08235 PF02954 Bacterial regulatory protein, Fis family LN249_08235 PF01590 GAF domain LN249_08235 PF00158 Sigma-54 interaction domain LN249_08255 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LN249_08255 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LN249_08260 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LN249_08265 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LN249_08265 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LN249_08270 PF12833 Helix-turn-helix domain LN249_08275 PF00593 TonB dependent receptor LN249_08275 PF07715 TonB-dependent Receptor Plug Domain LN249_08280 PF00072 Response regulator receiver domain LN249_08280 PF12431 Transcriptional regulator LN249_08285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_08285 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LN249_08285 PF17203 Single cache domain 3 LN249_08285 PF00989 PAS fold LN249_08300 PF13533 Biotin-lipoyl like LN249_08315 PF13533 Biotin-lipoyl like LN249_08325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_08325 PF03466 LysR substrate binding domain LN249_08335 PF13533 Biotin-lipoyl like LN249_08350 PF11008 Protein of unknown function (DUF2846) LN249_08355 PF01810 LysE type translocator LN249_08360 PF07237 Protein of unknown function (DUF1428) LN249_08380 PF01411 tRNA synthetases class II (A) LN249_08380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LN249_08410 PF02798 Glutathione S-transferase, N-terminal domain LN249_08570 PF00583 Acetyltransferase (GNAT) family LN249_08655 PF00857 Isochorismatase family LN249_08690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_08755 PF13344 Haloacid dehalogenase-like hydrolase LN249_08755 PF00293 NUDIX domain LN249_08775 PF00877 NlpC/P60 family LN249_08810 PF00677 Lumazine binding domain LN249_09190 PF05958 tRNA (Uracil-5-)-methyltransferase LN249_09190 PF01938 TRAM domain LN249_09260 PF01810 LysE type translocator LN249_09320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_09440 PF01906 Putative heavy-metal-binding LN249_09445 PF13495 Phage integrase, N-terminal SAM-like domain LN249_09445 PF00589 Phage integrase family LN249_09460 PF13302 Acetyltransferase (GNAT) domain LN249_09465 PF00158 Sigma-54 interaction domain LN249_09465 PF18024 Helix-turn-helix domain LN249_09470 PF05128 Domain of unknown function (DUF697) LN249_09475 PF04317 YcjX-like family, DUF463 LN249_09490 PF04715 Anthranilate synthase component I, N terminal region LN249_09490 PF00425 chorismate binding enzyme LN249_09495 PF00072 Response regulator receiver domain LN249_09495 PF09308 LuxQ, periplasmic LN249_09495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_09495 PF00512 His Kinase A (phospho-acceptor) domain LN249_09505 PF00293 NUDIX domain LN249_09510 PF03222 Tryptophan/tyrosine permease family LN249_09515 PF03313 Serine dehydratase alpha chain LN249_09515 PF03315 Serine dehydratase beta chain LN249_09520 PF04940 Sensors of blue-light using FAD LN249_09520 PF00563 EAL domain LN249_09530 PF01242 6-pyruvoyl tetrahydropterin synthase LN249_09535 PF00672 HAMP domain LN249_09535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_09535 PF17200 Single Cache domain 2 LN249_09550 PF00392 Bacterial regulatory proteins, gntR family LN249_09550 PF00155 Aminotransferase class I and II LN249_09565 PF00155 Aminotransferase class I and II LN249_09585 PF00672 HAMP domain LN249_09585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_09590 PF02028 BCCT, betaine/carnitine/choline family transporter LN249_09600 PF00072 Response regulator receiver domain LN249_09600 PF00196 Bacterial regulatory proteins, luxR family LN249_09605 PF07730 Histidine kinase LN249_09605 PF17200 Single Cache domain 2 LN249_09610 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LN249_09620 PF03480 Bacterial extracellular solute-binding protein, family 7 LN249_09635 PF00753 Metallo-beta-lactamase superfamily LN249_09640 PF05951 Bacterial protein of unknown function (DUF882) LN249_09645 PF01471 Putative peptidoglycan binding domain LN249_09645 PF03734 L,D-transpeptidase catalytic domain LN249_09670 PF00925 GTP cyclohydrolase II LN249_09680 PF03918 Cytochrome C biogenesis protein LN249_09685 PF08534 Redoxin LN249_09690 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LN249_09690 PF01578 Cytochrome C assembly protein LN249_09695 PF03916 Polysulphide reductase, NrfD LN249_09700 PF13247 4Fe-4S dicluster domain LN249_09710 PF02335 Cytochrome c552 LN249_09725 PF03989 DNA gyrase C-terminal domain, beta-propeller LN249_09725 PF00521 DNA gyrase/topoisomerase IV, subunit A LN249_09735 PF03477 ATP cone domain LN249_09735 PF02867 Ribonucleotide reductase, barrel domain LN249_09735 PF00317 Ribonucleotide reductase, all-alpha domain LN249_09740 PF00268 Ribonucleotide reductase, small chain LN249_09750 PF00994 Probable molybdopterin binding domain LN249_09765 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LN249_09770 PF16653 Saccharopine dehydrogenase C-terminal domain LN249_09770 PF03435 Saccharopine dehydrogenase NADP binding domain LN249_09775 PF00202 Aminotransferase class-III LN249_09800 PF01066 CDP-alcohol phosphatidyltransferase LN249_09805 PF08459 UvrC Helix-hairpin-helix N-terminal LN249_09805 PF02151 UvrB/uvrC motif LN249_09805 PF01541 GIY-YIG catalytic domain LN249_09810 PF00196 Bacterial regulatory proteins, luxR family LN249_09810 PF00072 Response regulator receiver domain LN249_09815 PF00136 DNA polymerase family B LN249_09815 PF03104 DNA polymerase family B, exonuclease domain LN249_09825 PF01132 Elongation factor P (EF-P) OB domain LN249_09825 PF08207 Elongation factor P (EF-P) KOW-like domain LN249_09825 PF09285 Elongation factor P, C-terminal LN249_09830 PF04269 Protein of unknown function, DUF440 LN249_09835 PF01479 S4 domain LN249_09835 PF00849 RNA pseudouridylate synthase LN249_09845 PF01300 Telomere recombination LN249_09850 PF02811 PHP domain LN249_09855 PF08056 Tryptophan operon leader peptide LN249_09860 PF04715 Anthranilate synthase component I, N terminal region LN249_09860 PF00425 chorismate binding enzyme LN249_09865 PF00117 Glutamine amidotransferase class-I LN249_09870 PF02885 Glycosyl transferase family, helical bundle domain LN249_09870 PF00591 Glycosyl transferase family, a/b domain LN249_09875 PF00218 Indole-3-glycerol phosphate synthase LN249_09875 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LN249_09880 PF00291 Pyridoxal-phosphate dependent enzyme LN249_09885 PF00290 Tryptophan synthase alpha chain LN249_09890 PF00027 Cyclic nucleotide-binding domain LN249_09890 PF13545 Crp-like helix-turn-helix domain LN249_09895 PF13193 AMP-binding enzyme C-terminal domain LN249_09895 PF00501 AMP-binding enzyme LN249_09900 PF00375 Sodium:dicarboxylate symporter family LN249_09905 PF17327 Acyl homoserine lactone synthase LN249_09910 PF00072 Response regulator receiver domain LN249_09910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_09920 PF04279 Intracellular septation protein A LN249_09925 PF03061 Thioesterase superfamily LN249_09930 PF03795 YCII-related domain LN249_09940 PF01717 Cobalamin-independent synthase, Catalytic domain LN249_09940 PF08267 Cobalamin-independent synthase, N-terminal domain LN249_09945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_09945 PF03466 LysR substrate binding domain LN249_09960 PF08448 PAS fold LN249_09960 PF08447 PAS fold LN249_09960 PF00990 Diguanylate cyclase, GGDEF domain LN249_09960 PF00563 EAL domain LN249_09965 PF11842 Domain of unknown function (DUF3362) LN249_09965 PF04055 Radical SAM superfamily LN249_09965 PF08497 Radical SAM N-terminal LN249_09980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_09980 PF00672 HAMP domain LN249_09985 PF00486 Transcriptional regulatory protein, C terminal LN249_09985 PF00072 Response regulator receiver domain LN249_09990 PF00672 HAMP domain LN249_09990 PF00512 His Kinase A (phospho-acceptor) domain LN249_09990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_10005 PF03466 LysR substrate binding domain LN249_10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_10010 PF00529 HlyD membrane-fusion protein of T1SS LN249_10010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_10020 PF08267 Cobalamin-independent synthase, N-terminal domain LN249_10020 PF01717 Cobalamin-independent synthase, Catalytic domain LN249_10030 PF02311 AraC-like ligand binding domain LN249_10030 PF12833 Helix-turn-helix domain LN249_10035 PF00857 Isochorismatase family LN249_10040 PF00005 ABC transporter LN249_10040 PF02687 FtsX-like permease family LN249_10040 PF12704 MacB-like periplasmic core domain LN249_10045 PF00005 ABC transporter LN249_10045 PF02687 FtsX-like permease family LN249_10045 PF12704 MacB-like periplasmic core domain LN249_10050 PF12704 MacB-like periplasmic core domain LN249_10050 PF02687 FtsX-like permease family LN249_10050 PF00005 ABC transporter LN249_10060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_10075 PF05958 tRNA (Uracil-5-)-methyltransferase LN249_10090 PF00085 Thioredoxin LN249_10095 PF11412 Disulphide bond corrector protein DsbC LN249_10095 PF02683 Cytochrome C biogenesis protein transmembrane region LN249_10105 PF00072 Response regulator receiver domain LN249_10105 PF00196 Bacterial regulatory proteins, luxR family LN249_10110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_10110 PF00512 His Kinase A (phospho-acceptor) domain LN249_10115 PF13247 4Fe-4S dicluster domain LN249_10120 PF03916 Polysulphide reductase, NrfD LN249_10125 PF01568 Molydopterin dinucleotide binding domain LN249_10125 PF00384 Molybdopterin oxidoreductase LN249_10125 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LN249_10130 PF00034 Cytochrome c LN249_10135 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LN249_10140 PF04403 Paraquat-inducible protein A LN249_10145 PF02470 MlaD protein LN249_10160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_10165 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LN249_10170 PF18073 Rubredoxin metal binding domain LN249_10175 PF06305 Lipopolysaccharide assembly protein A domain LN249_10180 PF00216 Bacterial DNA-binding protein LN249_10185 PF00575 S1 RNA binding domain LN249_10190 PF02224 Cytidylate kinase LN249_10195 PF01343 Peptidase family S49 LN249_10195 PF08496 Peptidase family S49 N-terminal LN249_10200 PF00106 short chain dehydrogenase LN249_10215 PF01336 OB-fold nucleic acid binding domain LN249_10215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LN249_10215 PF14579 Helix-hairpin-helix motif LN249_10215 PF02811 PHP domain LN249_10215 PF07733 Bacterial DNA polymerase III alpha NTPase domain LN249_10220 PF00072 Response regulator receiver domain LN249_10220 PF01584 CheW-like domain LN249_10225 PF00480 ROK family LN249_10230 PF02887 Pyruvate kinase, alpha/beta domain LN249_10230 PF00224 Pyruvate kinase, barrel domain LN249_10235 PF01734 Patatin-like phospholipase LN249_10250 PF00209 Sodium:neurotransmitter symporter family LN249_10265 PF02378 Phosphotransferase system, EIIC LN249_10265 PF00367 phosphotransferase system, EIIB LN249_10270 PF01026 TatD related DNase LN249_10275 PF09115 DNA polymerase III, delta subunit, C terminal LN249_10280 PF02223 Thymidylate kinase LN249_10285 PF02618 YceG-like family LN249_10290 PF01063 Amino-transferase class IV LN249_10295 PF00109 Beta-ketoacyl synthase, N-terminal domain LN249_10295 PF02801 Beta-ketoacyl synthase, C-terminal domain LN249_10300 PF00550 Phosphopantetheine attachment site LN249_10310 PF00698 Acyl transferase domain LN249_10315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LN249_10315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LN249_10320 PF02504 Fatty acid synthesis protein LN249_10325 PF01783 Ribosomal L32p protein family LN249_10330 PF02620 Large ribosomal RNA subunit accumulation protein YceD LN249_10335 PF02545 Maf-like protein LN249_10340 PF00849 RNA pseudouridylate synthase LN249_10340 PF01479 S4 domain LN249_10345 PF00575 S1 RNA binding domain LN249_10345 PF10150 Ribonuclease E/G family LN249_10345 PF12111 Polyribonucleotide phosphorylase C terminal LN249_10350 PF00916 Sulfate permease family LN249_10350 PF01740 STAS domain LN249_10355 PF01451 Low molecular weight phosphotyrosine protein phosphatase LN249_10360 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LN249_10360 PF12557 Cob(I)alamin adenosyltransferase N terminal LN249_10370 PF00485 Phosphoribulokinase / Uridine kinase family LN249_10375 PF10609 NUBPL iron-transfer P-loop NTPase LN249_10380 PF01588 Putative tRNA binding domain LN249_10380 PF09334 tRNA synthetases class I (M) LN249_10390 PF00392 Bacterial regulatory proteins, gntR family LN249_10390 PF07840 FadR C-terminal domain LN249_10395 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LN249_10400 PF02600 Disulfide bond formation protein DsbB LN249_10405 PF02810 SEC-C motif LN249_10405 PF07517 SecA DEAD-like domain LN249_10405 PF01043 SecA preprotein cross-linking domain LN249_10405 PF07516 SecA Wing and Scaffold domain LN249_10410 PF01207 Dihydrouridine synthase (Dus) LN249_10415 PF17158 Membrane-associated sensor, integral membrane domain LN249_10415 PF00990 Diguanylate cyclase, GGDEF domain LN249_10420 PF02903 Alpha amylase, N-terminal ig-like domain LN249_10420 PF00128 Alpha amylase, catalytic domain LN249_10425 PF00005 ABC transporter LN249_10430 PF02653 Branched-chain amino acid transport system / permease component LN249_10440 PF04217 Protein of unknown function, DUF412 LN249_10445 PF00871 Acetokinase family LN249_10450 PF07085 DRTGG domain LN249_10450 PF01515 Phosphate acetyl/butaryl transferase LN249_10455 PF13194 Domain of unknown function (DUF4010) LN249_10465 PF13409 Glutathione S-transferase, N-terminal domain LN249_10470 PF00005 ABC transporter LN249_10470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_10475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_10475 PF00005 ABC transporter LN249_10480 PF00528 Binding-protein-dependent transport system inner membrane component LN249_10480 PF12911 N-terminal TM domain of oligopeptide transport permease C LN249_10485 PF00528 Binding-protein-dependent transport system inner membrane component LN249_10490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_10495 PF02391 MoaE protein LN249_10500 PF02597 ThiS family LN249_10505 PF01967 MoaC family LN249_10510 PF00994 Probable molybdopterin binding domain LN249_10515 PF06463 Molybdenum Cofactor Synthesis C LN249_10515 PF04055 Radical SAM superfamily LN249_10520 PF01933 Uncharacterised protein family UPF0052 LN249_10525 PF01627 Hpt domain LN249_10530 PF00158 Sigma-54 interaction domain LN249_10530 PF00072 Response regulator receiver domain LN249_10530 PF02954 Bacterial regulatory protein, Fis family LN249_10535 PF02151 UvrB/uvrC motif LN249_10535 PF00271 Helicase conserved C-terminal domain LN249_10535 PF04851 Type III restriction enzyme, res subunit LN249_10535 PF17757 UvrB interaction domain LN249_10535 PF12344 Ultra-violet resistance protein B LN249_10545 PF02508 Rnf-Nqr subunit, membrane protein LN249_10550 PF04060 Putative Fe-S cluster LN249_10555 PF13375 RnfC Barrel sandwich hybrid domain LN249_10555 PF10531 SLBB domain LN249_10555 PF12838 4Fe-4S dicluster domain LN249_10555 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LN249_10560 PF03116 NQR2, RnfD, RnfE family LN249_10565 PF04205 FMN-binding domain LN249_10570 PF02508 Rnf-Nqr subunit, membrane protein LN249_10575 PF00633 Helix-hairpin-helix motif LN249_10575 PF10576 Iron-sulfur binding domain of endonuclease III LN249_10575 PF00730 HhH-GPD superfamily base excision DNA repair protein LN249_10580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_10585 PF10952 Protein of unknown function (DUF2753) LN249_10590 PF18393 MotY N-terminal domain LN249_10590 PF00691 OmpA family LN249_10595 PF00929 Exonuclease LN249_10600 PF13726 Na+-H+ antiporter family LN249_10600 PF03553 Na+/H+ antiporter family LN249_10610 PF00462 Glutaredoxin LN249_10615 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LN249_10615 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LN249_10630 PF00171 Aldehyde dehydrogenase family LN249_10630 PF00465 Iron-containing alcohol dehydrogenase LN249_10635 PF01914 MarC family integral membrane protein LN249_10640 PF00520 Ion transport protein LN249_10640 PF00027 Cyclic nucleotide-binding domain LN249_10645 PF02774 Semialdehyde dehydrogenase, dimerisation domain LN249_10645 PF01118 Semialdehyde dehydrogenase, NAD binding domain LN249_10650 PF03553 Na+/H+ antiporter family LN249_10665 PF04245 37-kD nucleoid-associated bacterial protein LN249_10670 PF07208 Protein of unknown function (DUF1414) LN249_10675 PF11893 Domain of unknown function (DUF3413) LN249_10675 PF00884 Sulfatase LN249_10685 PF00850 Histone deacetylase domain LN249_10690 PF00106 short chain dehydrogenase LN249_10705 PF00881 Nitroreductase family LN249_10715 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LN249_10715 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_10720 PF01343 Peptidase family S49 LN249_10725 PF17763 Glutaminase/Asparaginase C-terminal domain LN249_10725 PF00710 Asparaginase, N-terminal LN249_10730 PF07023 Protein of unknown function (DUF1315) LN249_10740 PF01641 SelR domain LN249_10745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LN249_10745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LN249_10750 PF01263 Aldose 1-epimerase LN249_10755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_10755 PF08447 PAS fold LN249_10755 PF13426 PAS domain LN249_10760 PF13847 Methyltransferase domain LN249_10775 PF00245 Alkaline phosphatase LN249_10785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_10795 PF00924 Mechanosensitive ion channel LN249_10795 PF05552 Conserved TM helix LN249_10800 PF03692 Putative zinc- or iron-chelating domain LN249_10805 PF04226 Transglycosylase associated protein LN249_10810 PF03692 Putative zinc- or iron-chelating domain LN249_10820 PF03313 Serine dehydratase alpha chain LN249_10825 PF01042 Endoribonuclease L-PSP LN249_10835 PF00230 Major intrinsic protein LN249_10840 PF13662 Toprim domain LN249_10840 PF02132 RecR protein LN249_10845 PF02575 YbaB/EbfC DNA-binding family LN249_10850 PF12169 DNA polymerase III subunits gamma and tau domain III LN249_10850 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LN249_10850 PF12170 DNA polymerase III tau subunit V interacting with alpha LN249_10855 PF00156 Phosphoribosyl transferase domain LN249_10860 PF04304 Protein of unknown function (DUF454) LN249_10865 PF00072 Response regulator receiver domain LN249_10870 PF03466 LysR substrate binding domain LN249_10870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_10875 PF00156 Phosphoribosyl transferase domain LN249_10880 PF02674 Colicin V production protein LN249_10885 PF05036 Sporulation related domain LN249_10890 PF02875 Mur ligase family, glutamate ligase domain LN249_10890 PF08245 Mur ligase middle domain LN249_10895 PF17848 Acetyl-coA carboxylase zinc finger domain LN249_10895 PF01039 Carboxyl transferase domain LN249_10900 PF01416 tRNA pseudouridine synthase LN249_10910 PF02774 Semialdehyde dehydrogenase, dimerisation domain LN249_10910 PF01118 Semialdehyde dehydrogenase, NAD binding domain LN249_10915 PF11890 Domain of unknown function (DUF3410) LN249_10915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LN249_10915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LN249_10920 PF00109 Beta-ketoacyl synthase, N-terminal domain LN249_10920 PF02801 Beta-ketoacyl synthase, C-terminal domain LN249_10925 PF01266 FAD dependent oxidoreductase LN249_10925 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LN249_10935 PF08891 YfcL protein LN249_10940 PF04315 Elongation factor P hydroxylase LN249_10945 PF03458 UPF0126 domain LN249_10950 PF01264 Chorismate synthase LN249_10955 PF05175 Methyltransferase small domain LN249_10960 PF01713 Smr domain LN249_10965 PF00300 Histidine phosphatase superfamily (branch 1) LN249_10970 PF00675 Insulinase (Peptidase family M16) LN249_10970 PF16187 Middle or third domain of peptidase_M16 LN249_10970 PF05193 Peptidase M16 inactive domain LN249_10980 PF00378 Enoyl-CoA hydratase/isomerase LN249_10980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LN249_10980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LN249_10985 PF02803 Thiolase, C-terminal domain LN249_10985 PF00108 Thiolase, N-terminal domain LN249_10990 PF08281 Sigma-70, region 4 LN249_10990 PF04542 Sigma-70 region 2 LN249_11000 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LN249_11005 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LN249_11010 PF04333 MlaA lipoprotein LN249_11015 PF03918 Cytochrome C biogenesis protein LN249_11020 PF03918 Cytochrome C biogenesis protein LN249_11025 PF08534 Redoxin LN249_11030 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LN249_11030 PF01578 Cytochrome C assembly protein LN249_11035 PF03100 CcmE LN249_11040 PF04995 Heme exporter protein D (CcmD) LN249_11045 PF01578 Cytochrome C assembly protein LN249_11050 PF03379 CcmB protein LN249_11055 PF00005 ABC transporter LN249_11065 PF01584 CheW-like domain LN249_11075 PF13614 AAA domain LN249_11080 PF00072 Response regulator receiver domain LN249_11080 PF01339 CheB methylesterase LN249_11085 PF01584 CheW-like domain LN249_11085 PF02895 Signal transducing histidine kinase, homodimeric domain LN249_11085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_11085 PF01627 Hpt domain LN249_11085 PF00072 Response regulator receiver domain LN249_11090 PF04344 Chemotaxis phosphatase, CheZ LN249_11095 PF00072 Response regulator receiver domain LN249_11100 PF04542 Sigma-70 region 2 LN249_11100 PF04539 Sigma-70 region 3 LN249_11100 PF04545 Sigma-70, region 4 LN249_11105 PF10609 NUBPL iron-transfer P-loop NTPase LN249_11110 PF00448 SRP54-type protein, GTPase domain LN249_11115 PF00771 FHIPEP family LN249_11120 PF01312 FlhB HrpN YscU SpaS Family LN249_11125 PF01311 Bacterial export proteins, family 1 LN249_11130 PF01313 Bacterial export proteins, family 3 LN249_11135 PF00813 FliP family LN249_11140 PF04347 Flagellar biosynthesis protein, FliO LN249_11145 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LN249_11150 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LN249_11150 PF02154 Flagellar motor switch protein FliM LN249_11170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LN249_11170 PF18269 T3SS EscN ATPase C-terminal domain LN249_11180 PF01706 FliG C-terminal domain LN249_11180 PF14841 FliG middle domain LN249_11180 PF14842 FliG N-terminal domain LN249_11185 PF01514 Secretory protein of YscJ/FliF family LN249_11185 PF08345 Flagellar M-ring protein C-terminal LN249_11190 PF02049 Flagellar hook-basal body complex protein FliE LN249_11195 PF00072 Response regulator receiver domain LN249_11195 PF02954 Bacterial regulatory protein, Fis family LN249_11195 PF00158 Sigma-54 interaction domain LN249_11200 PF00512 His Kinase A (phospho-acceptor) domain LN249_11200 PF13188 PAS domain LN249_11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_11205 PF00158 Sigma-54 interaction domain LN249_11205 PF02954 Bacterial regulatory protein, Fis family LN249_11205 PF06490 Flagellar regulatory protein FleQ LN249_11210 PF02561 Flagellar protein FliS LN249_11220 PF02465 Flagellar hook-associated protein 2 N-terminus LN249_11220 PF07195 Flagellar hook-associated protein 2 C-terminus LN249_11220 PF07196 Flagellin hook IN motif LN249_11225 PF03646 FlaG protein LN249_11230 PF07196 Flagellin hook IN motif LN249_11230 PF00669 Bacterial flagellin N-terminal helical region LN249_11230 PF00700 Bacterial flagellin C-terminal helical region LN249_11240 PF00700 Bacterial flagellin C-terminal helical region LN249_11240 PF07196 Flagellin hook IN motif LN249_11240 PF00669 Bacterial flagellin N-terminal helical region LN249_11245 PF04261 Dyp-type peroxidase family LN249_11250 PF11143 Protein of unknown function (DUF2919) LN249_11270 PF03960 ArsC family LN249_11275 PF01546 Peptidase family M20/M25/M40 LN249_11275 PF07687 Peptidase dimerisation domain LN249_11290 PF06804 NlpB/DapX lipoprotein LN249_11295 PF00701 Dihydrodipicolinate synthetase family LN249_11305 PF00578 AhpC/TSA family LN249_11310 PF01594 AI-2E family transporter LN249_11320 PF01435 Peptidase family M48 LN249_11320 PF13181 Tetratricopeptide repeat LN249_11325 PF03960 ArsC family LN249_11330 PF03358 NADPH-dependent FMN reductase LN249_11345 PF00860 Permease family LN249_11355 PF00586 AIR synthase related protein, N-terminal domain LN249_11355 PF02769 AIR synthase related protein, C-terminal domain LN249_11360 PF00551 Formyl transferase LN249_11365 PF13230 Glutamine amidotransferases class-II LN249_11370 PF13580 SIS domain LN249_11375 PF02770 Acyl-CoA dehydrogenase, middle domain LN249_11375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LN249_11375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LN249_11375 PF09317 Domain of unknown function (DUF1974) LN249_11380 PF01740 STAS domain LN249_11380 PF00916 Sulfate permease family LN249_11405 PF00929 Exonuclease LN249_11410 PF00075 RNase H LN249_11415 PF08241 Methyltransferase domain LN249_11420 PF16123 Hydroxyacylglutathione hydrolase C-terminus LN249_11420 PF00753 Metallo-beta-lactamase superfamily LN249_11425 PF01476 LysM domain LN249_11425 PF01464 Transglycosylase SLT domain LN249_11435 PF03372 Endonuclease/Exonuclease/phosphatase family LN249_11440 PF00543 Nitrogen regulatory protein P-II LN249_11445 PF00034 Cytochrome c LN249_11450 PF01171 PP-loop family LN249_11450 PF11734 TilS substrate C-terminal domain LN249_11450 PF09179 TilS substrate binding domain LN249_11455 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LN249_11460 PF01336 OB-fold nucleic acid binding domain LN249_11460 PF07733 Bacterial DNA polymerase III alpha NTPase domain LN249_11460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LN249_11460 PF14579 Helix-hairpin-helix motif LN249_11460 PF02811 PHP domain LN249_11465 PF01351 Ribonuclease HII LN249_11470 PF02684 Lipid-A-disaccharide synthetase LN249_11475 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LN249_11475 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_11480 PF07977 FabA-like domain LN249_11485 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_11485 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LN249_11490 PF03938 Outer membrane protein (OmpH-like) LN249_11495 PF01103 Surface antigen LN249_11495 PF07244 Surface antigen variable number repeat LN249_11500 PF02163 Peptidase family M50 LN249_11500 PF17820 PDZ domain LN249_11505 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LN249_11505 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LN249_11505 PF13288 DXP reductoisomerase C-terminal domain LN249_11515 PF01255 Putative undecaprenyl diphosphate synthase LN249_11520 PF01765 Ribosome recycling factor LN249_11525 PF00696 Amino acid kinase family LN249_11530 PF00889 Elongation factor TS LN249_11535 PF00318 Ribosomal protein S2 LN249_11540 PF00557 Metallopeptidase family M24 LN249_11545 PF01842 ACT domain LN249_11545 PF08335 GlnD PII-uridylyltransferase LN249_11545 PF01966 HD domain LN249_11545 PF01909 Nucleotidyltransferase domain LN249_11550 PF11944 Protein of unknown function (DUF3461) LN249_11555 PF00849 RNA pseudouridylate synthase LN249_11560 PF04287 tRNA pseudouridine synthase C LN249_11560 PF00849 RNA pseudouridylate synthase LN249_11585 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LN249_11590 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LN249_11590 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LN249_11595 PF01370 NAD dependent epimerase/dehydratase family LN249_11620 PF03806 AbgT putative transporter family LN249_11625 PF00444 Ribosomal protein L36 LN249_11630 PF01197 Ribosomal protein L31 LN249_11635 PF01980 tRNA-methyltransferase O LN249_11635 PF18389 TrmO C-terminal domain LN249_11650 PF06786 Uncharacterised protein family (UPF0253) LN249_11660 PF00209 Sodium:neurotransmitter symporter family LN249_11665 PF06483 Chitinase C LN249_11665 PF00704 Glycosyl hydrolases family 18 LN249_11675 PF01272 Transcription elongation factor, GreA/GreB, C-term LN249_11675 PF03449 Transcription elongation factor, N-terminal LN249_11680 PF09382 RQC domain LN249_11680 PF00570 HRDC domain LN249_11680 PF16124 RecQ zinc-binding LN249_11680 PF00270 DEAD/DEAH box helicase LN249_11680 PF00271 Helicase conserved C-terminal domain LN249_11685 PF00817 impB/mucB/samB family LN249_11685 PF11799 impB/mucB/samB family C-terminal domain LN249_11685 PF11798 IMS family HHH motif LN249_11700 PF02424 ApbE family LN249_11705 PF00111 2Fe-2S iron-sulfur cluster binding domain LN249_11705 PF00970 Oxidoreductase FAD-binding domain LN249_11705 PF00175 Oxidoreductase NAD-binding domain LN249_11710 PF02508 Rnf-Nqr subunit, membrane protein LN249_11715 PF02508 Rnf-Nqr subunit, membrane protein LN249_11720 PF04205 FMN-binding domain LN249_11725 PF03116 NQR2, RnfD, RnfE family LN249_11730 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LN249_11730 PF11973 NQRA C-terminal domain LN249_11735 PF01722 BolA-like protein LN249_11740 PF05175 Methyltransferase small domain LN249_11745 PF03923 Uncharacterized lipoprotein LN249_11745 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LN249_11750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LN249_11755 PF07690 Major Facilitator Superfamily LN249_11765 PF04542 Sigma-70 region 2 LN249_11765 PF04545 Sigma-70, region 4 LN249_11780 PF03502 Nucleoside-specific channel-forming protein, Tsx LN249_11785 PF02558 Ketopantoate reductase PanE/ApbA LN249_11785 PF08546 Ketopantoate reductase PanE/ApbA C terminal LN249_11790 PF01965 DJ-1/PfpI family LN249_11795 PF00266 Aminotransferase class-V LN249_11800 PF17158 Membrane-associated sensor, integral membrane domain LN249_11800 PF00990 Diguanylate cyclase, GGDEF domain LN249_11805 PF02657 Fe-S metabolism associated domain LN249_11810 PF00899 ThiF family LN249_11815 PF03562 MltA specific insert domain LN249_11815 PF06725 3D domain LN249_11825 PF00583 Acetyltransferase (GNAT) family LN249_11825 PF00696 Amino acid kinase family LN249_11835 PF13538 UvrD-like helicase C-terminal domain LN249_11840 PF13361 UvrD-like helicase C-terminal domain LN249_11840 PF12705 PD-(D/E)XK nuclease superfamily LN249_11840 PF00580 UvrD/REP helicase N-terminal domain LN249_11845 PF17946 RecC C-terminal domain LN249_11850 PF00884 Sulfatase LN249_11850 PF11893 Domain of unknown function (DUF3413) LN249_11860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_11860 PF03466 LysR substrate binding domain LN249_11865 PF07130 YebG protein LN249_11870 PF14602 Hexapeptide repeat of succinyl-transferase LN249_11870 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle LN249_11875 PF03009 Glycerophosphoryl diester phosphodiesterase family LN249_11880 PF07690 Major Facilitator Superfamily LN249_11885 PF00230 Major intrinsic protein LN249_11890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LN249_11890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LN249_11895 PF00455 DeoR C terminal sensor domain LN249_11895 PF08220 DeoR-like helix-turn-helix domain LN249_11900 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LN249_11900 PF01266 FAD dependent oxidoreductase LN249_11905 PF01544 CorA-like Mg2+ transporter protein LN249_11925 PF01588 Putative tRNA binding domain LN249_11930 PF00356 Bacterial regulatory proteins, lacI family LN249_11945 PF00356 Bacterial regulatory proteins, lacI family LN249_11950 PF01263 Aldose 1-epimerase LN249_11955 PF10509 Galactokinase galactose-binding signature LN249_11955 PF08544 GHMP kinases C terminal LN249_11955 PF00288 GHMP kinases N terminal domain LN249_11960 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LN249_11960 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LN249_11965 PF16363 GDP-mannose 4,6 dehydratase LN249_11970 PF00356 Bacterial regulatory proteins, lacI family LN249_11975 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LN249_11975 PF00703 Glycosyl hydrolases family 2 LN249_11975 PF16353 Domain of unknown function(DUF4981) LN249_11975 PF02929 Beta galactosidase small chain LN249_11975 PF02837 Glycosyl hydrolases family 2, sugar binding domain LN249_11980 PF04074 YhcH/YjgK/YiaL LN249_11985 PF13520 Amino acid permease LN249_11990 PF03466 LysR substrate binding domain LN249_11990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_12020 PF00437 Type II/IV secretion system protein LN249_12050 PF00263 Bacterial type II and III secretion system protein LN249_12050 PF04972 BON domain LN249_12050 PF13629 Pilus formation protein N terminal region LN249_12075 PF02805 Metal binding domain of Ada LN249_12075 PF12833 Helix-turn-helix domain LN249_12080 PF00501 AMP-binding enzyme LN249_12090 PF03466 LysR substrate binding domain LN249_12090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_12095 PF00679 Elongation factor G C-terminus LN249_12095 PF14492 Elongation Factor G, domain II LN249_12095 PF03764 Elongation factor G, domain IV LN249_12095 PF00009 Elongation factor Tu GTP binding domain LN249_12095 PF03144 Elongation factor Tu domain 2 LN249_12100 PF18073 Rubredoxin metal binding domain LN249_12110 PF18429 Domain of unknown function (DUF5609) LN249_12120 PF01048 Phosphorylase superfamily LN249_12125 PF01676 Metalloenzyme superfamily LN249_12130 PF02885 Glycosyl transferase family, helical bundle domain LN249_12130 PF00591 Glycosyl transferase family, a/b domain LN249_12130 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LN249_12135 PF01791 DeoC/LacD family aldolase LN249_12140 PF01773 Na+ dependent nucleoside transporter N-terminus LN249_12140 PF07670 Nucleoside recognition LN249_12140 PF07662 Na+ dependent nucleoside transporter C-terminus LN249_12145 PF01026 TatD related DNase LN249_12155 PF00009 Elongation factor Tu GTP binding domain LN249_12155 PF03144 Elongation factor Tu domain 2 LN249_12155 PF16658 Class II release factor RF3, C-terminal domain LN249_12175 PF13508 Acetyltransferase (GNAT) domain LN249_12180 PF02036 SCP-2 sterol transfer family LN249_12185 PF03707 Bacterial signalling protein N terminal repeat LN249_12185 PF00563 EAL domain LN249_12185 PF00990 Diguanylate cyclase, GGDEF domain LN249_12190 PF01136 Peptidase family U32 LN249_12200 PF01554 MatE LN249_12210 PF07719 Tetratricopeptide repeat LN249_12210 PF13181 Tetratricopeptide repeat LN249_12215 PF00013 KH domain LN249_12215 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LN249_12215 PF01138 3' exoribonuclease family, domain 1 LN249_12215 PF03725 3' exoribonuclease family, domain 2 LN249_12215 PF00575 S1 RNA binding domain LN249_12220 PF00312 Ribosomal protein S15 LN249_12225 PF01509 TruB family pseudouridylate synthase (N terminal domain) LN249_12225 PF16198 tRNA pseudouridylate synthase B C-terminal domain LN249_12225 PF09157 Pseudouridine synthase II TruB, C-terminal LN249_12230 PF02033 Ribosome-binding factor A LN249_12235 PF04760 Translation initiation factor IF-2, N-terminal region LN249_12235 PF11987 Translation-initiation factor 2 LN249_12235 PF00009 Elongation factor Tu GTP binding domain LN249_12235 PF08364 Bacterial translation initiation factor IF-2 associated region LN249_12240 PF13184 NusA-like KH domain LN249_12240 PF08529 NusA N-terminal domain LN249_12240 PF00575 S1 RNA binding domain LN249_12245 PF02576 RimP N-terminal domain LN249_12245 PF17384 RimP C-terminal SH3 domain LN249_12260 PF03840 Preprotein translocase SecG subunit LN249_12265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LN249_12265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LN249_12265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LN249_12265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LN249_12270 PF00809 Pterin binding enzyme LN249_12275 PF01434 Peptidase family M41 LN249_12275 PF06480 FtsH Extracellular LN249_12275 PF00004 ATPase family associated with various cellular activities (AAA) LN249_12275 PF17862 AAA+ lid domain LN249_12280 PF01728 FtsJ-like methyltransferase LN249_12285 PF01985 CRS1 / YhbY (CRM) domain LN249_12290 PF03449 Transcription elongation factor, N-terminal LN249_12290 PF01272 Transcription elongation factor, GreA/GreB, C-term LN249_12295 PF13609 Gram-negative porin LN249_12300 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LN249_12310 PF00579 tRNA synthetases class I (W and Y) LN249_12315 PF01476 LysM domain LN249_12315 PF01551 Peptidase family M23 LN249_12315 PF08525 Opacity-associated protein A N-terminal motif LN249_12320 PF00873 AcrB/AcrD/AcrF family LN249_12330 PF01521 Iron-sulphur cluster biosynthesis LN249_12335 PF00202 Aminotransferase class-III LN249_12340 PF01594 AI-2E family transporter LN249_12345 PF08468 Methyltransferase small domain N-terminal LN249_12345 PF05175 Methyltransferase small domain LN249_12350 PF00072 Response regulator receiver domain LN249_12350 PF09308 LuxQ, periplasmic LN249_12350 PF00512 His Kinase A (phospho-acceptor) domain LN249_12350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_12355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_12360 PF00528 Binding-protein-dependent transport system inner membrane component LN249_12365 PF00528 Binding-protein-dependent transport system inner membrane component LN249_12365 PF12911 N-terminal TM domain of oligopeptide transport permease C LN249_12370 PF00005 ABC transporter LN249_12370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_12375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_12375 PF00005 ABC transporter LN249_12385 PF01869 BadF/BadG/BcrA/BcrD ATPase family LN249_12390 PF00728 Glycosyl hydrolase family 20, catalytic domain LN249_12390 PF02838 Glycosyl hydrolase family 20, domain 2 LN249_12395 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LN249_12395 PF06165 Glycosyltransferase family 36 LN249_12400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LN249_12400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LN249_12400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LN249_12400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LN249_12405 PF08402 TOBE domain LN249_12405 PF00005 ABC transporter LN249_12415 PF13416 Bacterial extracellular solute-binding protein LN249_12420 PF00909 Ammonium Transporter Family LN249_12425 PF00543 Nitrogen regulatory protein P-II LN249_12430 PF06062 Uncharacterised protein family (UPF0231) LN249_12435 PF00330 Aconitase family (aconitate hydratase) LN249_12435 PF06434 Aconitate hydratase 2 N-terminus LN249_12435 PF11791 Aconitate B N-terminal domain LN249_12440 PF01734 Patatin-like phospholipase LN249_12445 PF00912 Transglycosylase LN249_12445 PF00905 Penicillin binding protein transpeptidase domain LN249_12445 PF14814 Bifunctional transglycosylase second domain LN249_12450 PF00270 DEAD/DEAH box helicase LN249_12450 PF08482 ATP-dependent helicase C-terminal LN249_12450 PF00271 Helicase conserved C-terminal domain LN249_12450 PF04408 Helicase associated domain (HA2) LN249_12455 PF17746 SfsA N-terminal OB domain LN249_12455 PF03749 Sugar fermentation stimulation protein RE domain LN249_12460 PF01258 Prokaryotic dksA/traR C4-type zinc finger LN249_12465 PF00749 tRNA synthetases class I (E and Q), catalytic domain LN249_12470 PF01743 Poly A polymerase head domain LN249_12470 PF12626 Polymerase A arginine-rich C-terminus LN249_12470 PF12627 Probable RNA and SrmB- binding site of polymerase A LN249_12475 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LN249_12480 PF02548 Ketopantoate hydroxymethyltransferase LN249_12485 PF02569 Pantoate-beta-alanine ligase LN249_12490 PF03279 Bacterial lipid A biosynthesis acyltransferase LN249_12495 PF01061 ABC-2 type transporter LN249_12500 PF00005 ABC transporter LN249_12505 PF00916 Sulfate permease family LN249_12505 PF01740 STAS domain LN249_12510 PF00484 Carbonic anhydrase LN249_12515 PF00156 Phosphoribosyl transferase domain LN249_12520 PF00440 Bacterial regulatory proteins, tetR family LN249_12525 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_12525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LN249_12530 PF02817 e3 binding domain LN249_12530 PF00364 Biotin-requiring enzyme LN249_12530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LN249_12535 PF17831 Pyruvate dehydrogenase E1 component middle domain LN249_12535 PF00456 Transketolase, thiamine diphosphate binding domain LN249_12540 PF07729 FCD domain LN249_12540 PF00392 Bacterial regulatory proteins, gntR family LN249_12545 PF01510 N-acetylmuramoyl-L-alanine amidase LN249_12550 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LN249_12550 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LN249_12555 PF07963 Prokaryotic N-terminal methylation motif LN249_12555 PF00114 Pilin (bacterial filament) LN249_12560 PF00437 Type II/IV secretion system protein LN249_12560 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LN249_12565 PF00482 Type II secretion system (T2SS), protein F LN249_12570 PF06750 Bacterial Peptidase A24 N-terminal domain LN249_12570 PF01478 Type IV leader peptidase family LN249_12575 PF01121 Dephospho-CoA kinase LN249_12580 PF07072 Cell division protein LN249_12585 PF03884 DNA gyrase inhibitor YacG LN249_12590 PF01245 Ribosomal protein L19 LN249_12595 PF01746 tRNA (Guanine-1)-methyltransferase LN249_12600 PF01782 RimM N-terminal domain LN249_12600 PF05239 PRC-barrel domain LN249_12605 PF00886 Ribosomal protein S16 LN249_12610 PF00448 SRP54-type protein, GTPase domain LN249_12610 PF02881 SRP54-type protein, helical bundle domain LN249_12610 PF02978 Signal peptide binding domain LN249_12615 PF01578 Cytochrome C assembly protein LN249_12620 PF00571 CBS domain LN249_12620 PF03471 Transporter associated domain LN249_12620 PF01595 Cyclin M transmembrane N-terminal domain LN249_12625 PF02664 S-Ribosylhomocysteinase (LuxS) LN249_12635 PF04262 Glutamate-cysteine ligase LN249_12640 PF00675 Insulinase (Peptidase family M16) LN249_12640 PF05193 Peptidase M16 inactive domain LN249_12645 PF09335 SNARE associated Golgi protein LN249_12650 PF08240 Alcohol dehydrogenase GroES-like domain LN249_12650 PF00107 Zinc-binding dehydrogenase LN249_12655 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LN249_12660 PF00364 Biotin-requiring enzyme LN249_12660 PF02436 Conserved carboxylase domain LN249_12660 PF00682 HMGL-like LN249_12665 PF04277 Oxaloacetate decarboxylase, gamma chain LN249_12720 PF02599 Global regulator protein family LN249_12725 PF00696 Amino acid kinase family LN249_12725 PF01842 ACT domain LN249_12725 PF13840 ACT domain LN249_12730 PF02272 DHHA1 domain LN249_12730 PF01411 tRNA synthetases class II (A) LN249_12730 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LN249_12735 PF02631 RecX family LN249_12740 PF00154 recA bacterial DNA recombination protein LN249_12745 PF02464 Competence-damaged protein LN249_12750 PF00488 MutS domain V LN249_12750 PF05192 MutS domain III LN249_12750 PF05190 MutS family domain IV LN249_12750 PF01624 MutS domain I LN249_12750 PF05188 MutS domain II LN249_12755 PF00140 Sigma-70 factor, region 1.2 LN249_12755 PF04542 Sigma-70 region 2 LN249_12755 PF04539 Sigma-70 region 3 LN249_12755 PF04545 Sigma-70, region 4 LN249_12760 PF01476 LysM domain LN249_12760 PF01551 Peptidase family M23 LN249_12770 PF01975 Survival protein SurE LN249_12775 PF01142 tRNA pseudouridine synthase D (TruD) LN249_12780 PF02542 YgbB family LN249_12785 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LN249_12790 PF04977 Septum formation initiator LN249_12795 PF03952 Enolase, N-terminal domain LN249_12795 PF00113 Enolase, C-terminal TIM barrel domain LN249_12800 PF06418 CTP synthase N-terminus LN249_12800 PF00117 Glutamine amidotransferase class-I LN249_12805 PF03819 MazG nucleotide pyrophosphohydrolase domain LN249_12810 PF13291 ACT domain LN249_12810 PF04607 Region found in RelA / SpoT proteins LN249_12810 PF02824 TGS domain LN249_12815 PF01938 TRAM domain LN249_12815 PF05958 tRNA (Uracil-5-)-methyltransferase LN249_12820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LN249_12820 PF00072 Response regulator receiver domain LN249_12820 PF01627 Hpt domain LN249_12820 PF00512 His Kinase A (phospho-acceptor) domain LN249_12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_12820 PF00672 HAMP domain LN249_12825 PF01648 4'-phosphopantetheinyl transferase superfamily LN249_12830 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LN249_12835 PF02565 Recombination protein O C terminal LN249_12835 PF11967 Recombination protein O N terminal LN249_12840 PF01926 50S ribosome-binding GTPase LN249_12840 PF07650 KH domain LN249_12845 PF14622 Ribonuclease-III-like LN249_12845 PF00035 Double-stranded RNA binding motif LN249_12850 PF10502 Signal peptidase, peptidase S26 LN249_12855 PF00679 Elongation factor G C-terminus LN249_12855 PF00009 Elongation factor Tu GTP binding domain LN249_12855 PF03144 Elongation factor Tu domain 2 LN249_12855 PF06421 GTP-binding protein LepA C-terminus LN249_12865 PF03888 MucB/RseB N-terminal domain LN249_12865 PF17188 MucB/RseB C-terminal domain LN249_12870 PF03872 Anti sigma-E protein RseA, N-terminal domain LN249_12870 PF03873 Anti sigma-E protein RseA, C-terminal domain LN249_12875 PF08281 Sigma-70, region 4 LN249_12875 PF04542 Sigma-70 region 2 LN249_12880 PF00890 FAD binding domain LN249_12880 PF02910 Fumarate reductase flavoprotein C-term LN249_12885 PF03937 Flavinator of succinate dehydrogenase LN249_12890 PF01571 Aminomethyltransferase folate-binding domain LN249_12905 PF01494 FAD binding domain LN249_12910 PF01494 FAD binding domain LN249_12915 PF03695 Uncharacterised protein family (UPF0149) LN249_12920 PF05164 Cell division protein ZapA LN249_12930 PF01812 5-formyltetrahydrofolate cyclo-ligase family LN249_12935 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LN249_12940 PF01842 ACT domain LN249_12940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LN249_12940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LN249_12945 PF04402 Protein of unknown function (DUF541) LN249_12950 PF03466 LysR substrate binding domain LN249_12950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_12955 PF01810 LysE type translocator LN249_12965 PF00924 Mechanosensitive ion channel LN249_12965 PF05552 Conserved TM helix LN249_12970 PF01116 Fructose-bisphosphate aldolase class-II LN249_12975 PF00162 Phosphoglycerate kinase LN249_12980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LN249_12980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LN249_12985 PF07715 TonB-dependent Receptor Plug Domain LN249_12985 PF00593 TonB dependent receptor LN249_12990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_12990 PF03466 LysR substrate binding domain LN249_12995 PF00456 Transketolase, thiamine diphosphate binding domain LN249_12995 PF02780 Transketolase, C-terminal domain LN249_12995 PF02779 Transketolase, pyrimidine binding domain LN249_13000 PF00438 S-adenosylmethionine synthetase, N-terminal domain LN249_13000 PF02772 S-adenosylmethionine synthetase, central domain LN249_13000 PF02773 S-adenosylmethionine synthetase, C-terminal domain LN249_13010 PF17283 SprT-like zinc ribbon domain LN249_13010 PF10263 SprT-like family LN249_13015 PF04231 Endonuclease I LN249_13020 PF04452 RNA methyltransferase LN249_13025 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LN249_13025 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LN249_13035 PF03652 Holliday junction resolvase LN249_13040 PF00437 Type II/IV secretion system protein LN249_13045 PF00437 Type II/IV secretion system protein LN249_13050 PF01168 Alanine racemase, N-terminal domain LN249_13055 PF14748 Pyrroline-5-carboxylate reductase dimerisation LN249_13055 PF03807 NADP oxidoreductase coenzyme F420-dependent LN249_13060 PF02325 YGGT family LN249_13065 PF02594 Uncharacterised ACR, YggU family COG1872 LN249_13075 PF01725 Ham1 family LN249_13080 PF04055 Radical SAM superfamily LN249_13080 PF06969 HemN C-terminal domain LN249_13085 PF04960 Glutaminase LN249_13090 PF02086 D12 class N6 adenine-specific DNA methyltransferase LN249_13095 PF02390 Putative methyltransferase LN249_13100 PF14815 NUDIX domain LN249_13100 PF00633 Helix-hairpin-helix motif LN249_13100 PF00730 HhH-GPD superfamily base excision DNA repair protein LN249_13105 PF04362 Bacterial Fe(2+) trafficking LN249_13110 PF01464 Transglycosylase SLT domain LN249_13110 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LN249_13150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_13150 PF17200 Single Cache domain 2 LN249_13150 PF00672 HAMP domain LN249_13180 PF00171 Aldehyde dehydrogenase family LN249_13230 PF00356 Bacterial regulatory proteins, lacI family LN249_13230 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LN249_13235 PF04794 YdjC-like protein LN249_13240 PF02056 Family 4 glycosyl hydrolase LN249_13240 PF11975 Family 4 glycosyl hydrolase C-terminal domain LN249_13245 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LN249_13250 PF02378 Phosphotransferase system, EIIC LN249_13255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LN249_13260 PF01522 Polysaccharide deacetylase LN249_13275 PF10011 Predicted membrane protein (DUF2254) LN249_13285 PF03739 Lipopolysaccharide export system permease LptF/LptG LN249_13290 PF03739 Lipopolysaccharide export system permease LptF/LptG LN249_13295 PF00883 Cytosol aminopeptidase family, catalytic domain LN249_13295 PF02789 Cytosol aminopeptidase family, N-terminal domain LN249_13300 PF04364 DNA polymerase III chi subunit, HolC LN249_13305 PF10458 Valyl tRNA synthetase tRNA binding arm LN249_13305 PF08264 Anticodon-binding domain of tRNA LN249_13305 PF00133 tRNA synthetases class I (I, L, M and V) LN249_13315 PF00583 Acetyltransferase (GNAT) family LN249_13325 PF06877 Regulator of ribonuclease activity B LN249_13335 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LN249_13335 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LN249_13345 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LN249_13345 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LN249_13350 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LN249_13350 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LN249_13355 PF01042 Endoribonuclease L-PSP LN249_13360 PF01553 Acyltransferase LN249_13365 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LN249_13370 PF01722 BolA-like protein LN249_13380 PF05494 MlaC protein LN249_13385 PF02470 MlaD protein LN249_13390 PF02405 Permease MlaE LN249_13395 PF00005 ABC transporter LN249_13400 PF01699 Sodium/calcium exchanger protein LN249_13405 PF00571 CBS domain LN249_13405 PF01380 SIS domain LN249_13415 PF03968 OstA-like protein LN249_13420 PF00005 ABC transporter LN249_13420 PF12399 Branched-chain amino acid ATP-binding cassette transporter LN249_13425 PF00309 Sigma-54 factor, Activator interacting domain (AID) LN249_13425 PF04552 Sigma-54, DNA binding domain LN249_13425 PF04963 Sigma-54 factor, core binding domain LN249_13430 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LN249_13435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LN249_13440 PF03668 P-loop ATPase protein family LN249_13445 PF00381 PTS HPr component phosphorylation site LN249_13450 PF00571 CBS domain LN249_13450 PF01769 Divalent cation transporter LN249_13450 PF03448 MgtE intracellular N domain LN249_13455 PF01523 Putative modulator of DNA gyrase LN249_13460 PF04751 Protein of unknown function (DUF615) LN249_13465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LN249_13465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LN249_13470 PF00849 RNA pseudouridylate synthase LN249_13480 PF18337 RapA N-terminal Tudor like domain LN249_13480 PF00271 Helicase conserved C-terminal domain LN249_13480 PF12137 RNA polymerase recycling family C-terminal LN249_13480 PF18339 RapA N-terminal Tudor like domain 1 LN249_13480 PF00176 SNF2 family N-terminal domain LN249_13485 PF02562 PhoH-like protein LN249_13485 PF13638 PIN domain LN249_13490 PF01523 Putative modulator of DNA gyrase LN249_13495 PF00795 Carbon-nitrogen hydrolase LN249_13500 PF13502 AsmA-like C-terminal region LN249_13500 PF13116 Protein of unknown function LN249_13505 PF10150 Ribonuclease E/G family LN249_13505 PF00575 S1 RNA binding domain LN249_13510 PF02545 Maf-like protein LN249_13515 PF04093 rod shape-determining protein MreD LN249_13520 PF04085 rod shape-determining protein MreC LN249_13570 PF00482 Type II secretion system (T2SS), protein F LN249_13575 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LN249_13575 PF00437 Type II/IV secretion system protein LN249_13585 PF13401 AAA domain LN249_13585 PF01471 Putative peptidoglycan binding domain LN249_13590 PF00263 Bacterial type II and III secretion system protein LN249_13590 PF03958 Bacterial type II/III secretion system short domain LN249_13610 PF00563 EAL domain LN249_13610 PF17157 Gammaproteobacterial periplasmic sensor domain LN249_13610 PF00990 Diguanylate cyclase, GGDEF domain LN249_13615 PF00436 Single-strand binding protein family LN249_13620 PF00196 Bacterial regulatory proteins, luxR family LN249_13625 PF00483 Nucleotidyl transferase LN249_13630 PF17755 UvrA DNA-binding domain LN249_13630 PF17760 UvrA interaction domain LN249_13630 PF00005 ABC transporter LN249_13640 PF00266 Aminotransferase class-V LN249_13645 PF01842 ACT domain LN249_13645 PF00696 Amino acid kinase family LN249_13650 PF02310 B12 binding domain LN249_13650 PF02607 B12 binding domain LN249_13650 PF02965 Vitamin B12 dependent methionine synthase, activation domain LN249_13650 PF00809 Pterin binding enzyme LN249_13650 PF02574 Homocysteine S-methyltransferase LN249_13655 PF00999 Sodium/hydrogen exchanger family LN249_13710 PF01507 Phosphoadenosine phosphosulfate reductase family LN249_13715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LN249_13715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LN249_13720 PF00667 FAD binding domain LN249_13720 PF00258 Flavodoxin LN249_13720 PF00175 Oxidoreductase NAD-binding domain LN249_13740 PF01207 Dihydrouridine synthase (Dus) LN249_13745 PF01475 Ferric uptake regulator family LN249_13755 PF00342 Phosphoglucose isomerase LN249_13760 PF01894 Uncharacterised protein family UPF0047 LN249_13765 PF00842 Alanine racemase, C-terminal domain LN249_13765 PF01168 Alanine racemase, N-terminal domain LN249_13770 PF00772 DnaB-like helicase N terminal domain LN249_13770 PF03796 DnaB-like helicase C terminal domain LN249_13780 PF03948 Ribosomal protein L9, C-terminal domain LN249_13780 PF01281 Ribosomal protein L9, N-terminal domain LN249_13785 PF01084 Ribosomal protein S18 LN249_13790 PF00436 Single-strand binding protein family LN249_13795 PF01250 Ribosomal protein S6 LN249_13800 PF00834 Ribulose-phosphate 3 epimerase family LN249_13805 PF02086 D12 class N6 adenine-specific DNA methyltransferase LN249_13815 PF01761 3-dehydroquinate synthase LN249_13820 PF01202 Shikimate kinase LN249_13825 PF07660 Secretin and TonB N terminus short domain LN249_13825 PF11741 AMIN domain LN249_13825 PF00263 Bacterial type II and III secretion system protein LN249_13825 PF03958 Bacterial type II/III secretion system short domain LN249_13830 PF04351 Pilus assembly protein, PilP LN249_13840 PF05137 Fimbrial assembly protein (PilN) LN249_13850 PF17092 Penicillin-binding protein OB-like domain LN249_13850 PF00912 Transglycosylase LN249_13850 PF00905 Penicillin binding protein transpeptidase domain LN249_13855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_13855 PF03466 LysR substrate binding domain LN249_13860 PF00462 Glutaredoxin LN249_13860 PF08534 Redoxin LN249_13865 PF00403 Heavy-metal-associated domain LN249_13865 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_13865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LN249_13875 PF00206 Lyase LN249_13875 PF14698 Argininosuccinate lyase C-terminal LN249_13875 PF00583 Acetyltransferase (GNAT) family LN249_13880 PF00764 Arginosuccinate synthase LN249_13885 PF00696 Amino acid kinase family LN249_13895 PF07687 Peptidase dimerisation domain LN249_13895 PF01546 Peptidase family M20/M25/M40 LN249_13900 PF00311 Phosphoenolpyruvate carboxylase LN249_13910 PF02219 Methylenetetrahydrofolate reductase LN249_13915 PF00696 Amino acid kinase family LN249_13915 PF00742 Homoserine dehydrogenase LN249_13915 PF03447 Homoserine dehydrogenase, NAD binding domain LN249_13920 PF01053 Cys/Met metabolism PLP-dependent enzyme LN249_13925 PF01340 Met Apo-repressor, MetJ LN249_13930 PF00390 Malic enzyme, N-terminal domain LN249_13930 PF03949 Malic enzyme, NAD binding domain LN249_13935 PF00210 Ferritin-like domain LN249_13940 PF04324 BFD-like [2Fe-2S] binding domain LN249_13945 PF03144 Elongation factor Tu domain 2 LN249_13945 PF03143 Elongation factor Tu C-terminal domain LN249_13945 PF00009 Elongation factor Tu GTP binding domain LN249_13950 PF03144 Elongation factor Tu domain 2 LN249_13950 PF00679 Elongation factor G C-terminus LN249_13950 PF00009 Elongation factor Tu GTP binding domain LN249_13950 PF03764 Elongation factor G, domain IV LN249_13950 PF14492 Elongation Factor G, domain II LN249_13955 PF00177 Ribosomal protein S7p/S5e LN249_13960 PF00164 Ribosomal protein S12/S23 LN249_13965 PF04077 DsrH like protein LN249_13970 PF02635 DsrE/DsrF-like family LN249_13975 PF02635 DsrE/DsrF-like family LN249_13980 PF13309 HTH domain LN249_13980 PF08348 YheO-like PAS domain LN249_13985 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LN249_13985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LN249_13995 PF04102 SlyX LN249_14000 PF01112 Asparaginase LN249_14005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LN249_14015 PF00999 Sodium/hydrogen exchanger family LN249_14015 PF02254 TrkA-N domain LN249_14020 PF02525 Flavodoxin-like fold LN249_14025 PF00005 ABC transporter LN249_14025 PF12848 ABC transporter LN249_14035 PF00561 alpha/beta hydrolase fold LN249_14040 PF06794 Uncharacterised protein family (UPF0270) LN249_14045 PF00485 Phosphoribulokinase / Uridine kinase family LN249_14050 PF00027 Cyclic nucleotide-binding domain LN249_14050 PF13545 Crp-like helix-turn-helix domain LN249_14060 PF00171 Aldehyde dehydrogenase family LN249_14065 PF04958 Arginine N-succinyltransferase beta subunit LN249_14070 PF00202 Aminotransferase class-III LN249_14075 PF00117 Glutamine amidotransferase class-I LN249_14090 PF00579 tRNA synthetases class I (W and Y) LN249_14095 PF13419 Haloacid dehalogenase-like hydrolase LN249_14100 PF08032 RNA 2'-O ribose methyltransferase substrate binding LN249_14100 PF00588 SpoU rRNA Methylase family LN249_14105 PF17876 Cold shock domain LN249_14105 PF08461 Ribonuclease R winged-helix domain LN249_14105 PF08206 Ribonuclease B OB domain LN249_14105 PF00773 RNB domain LN249_14105 PF00575 S1 RNA binding domain LN249_14110 PF02082 Transcriptional regulator LN249_14115 PF00970 Oxidoreductase FAD-binding domain LN249_14115 PF00042 Globin LN249_14115 PF00175 Oxidoreductase NAD-binding domain LN249_14120 PF08238 Sel1 repeat LN249_14125 PF00709 Adenylosuccinate synthetase LN249_14130 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LN249_14135 PF01145 SPFH domain / Band 7 family LN249_14140 PF12221 Bacterial membrane protein N terminal LN249_14140 PF01145 SPFH domain / Band 7 family LN249_14145 PF13167 GTP-binding GTPase N-terminal LN249_14145 PF01926 50S ribosome-binding GTPase LN249_14145 PF16360 GTP-binding GTPase Middle Region LN249_14150 PF17209 Hfq protein LN249_14160 PF01119 DNA mismatch repair protein, C-terminal domain LN249_14160 PF08676 MutL C terminal dimerisation domain LN249_14165 PF01520 N-acetylmuramoyl-L-alanine amidase LN249_14170 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LN249_14175 PF08331 Domain of unknown function (DUF1730) LN249_14240 PF00929 Exonuclease LN249_14245 PF03193 RsgA GTPase LN249_14250 PF02666 Phosphatidylserine decarboxylase LN249_14255 PF03600 Citrate transporter LN249_14255 PF02080 TrkA-C domain LN249_14265 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LN249_14265 PF01676 Metalloenzyme superfamily LN249_14270 PF00581 Rhodanese-like domain LN249_14275 PF02556 Preprotein translocase subunit SecB LN249_14280 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LN249_14280 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LN249_14285 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_14285 PF06426 Serine acetyltransferase, N-terminal LN249_14290 PF01551 Peptidase family M23 LN249_14300 PF08360 QacR-like protein, C-terminal region LN249_14300 PF00440 Bacterial regulatory proteins, tetR family LN249_14310 PF00152 tRNA synthetases class II (D, K and N) LN249_14315 PF00890 FAD binding domain LN249_14315 PF02910 Fumarate reductase flavoprotein C-term LN249_14320 PF13085 2Fe-2S iron-sulfur cluster binding domain LN249_14320 PF13183 4Fe-4S dicluster domain LN249_14325 PF02300 Fumarate reductase subunit C LN249_14330 PF02313 Fumarate reductase subunit D LN249_14340 PF01132 Elongation factor P (EF-P) OB domain LN249_14340 PF08207 Elongation factor P (EF-P) KOW-like domain LN249_14340 PF09285 Elongation factor P, C-terminal LN249_14345 PF04055 Radical SAM superfamily LN249_14350 PF02308 MgtC family LN249_14360 PF00118 TCP-1/cpn60 chaperonin family LN249_14365 PF00166 Chaperonin 10 Kd subunit LN249_14370 PF01554 MatE LN249_14375 PF00365 Phosphofructokinase LN249_14380 PF01545 Cation efflux family LN249_14380 PF16916 Dimerisation domain of Zinc Transporter LN249_14385 PF07813 LTXXQ motif family protein LN249_14390 PF00486 Transcriptional regulatory protein, C terminal LN249_14390 PF00072 Response regulator receiver domain LN249_14395 PF16527 Two-component sensor protein CpxA, periplasmic domain LN249_14395 PF00672 HAMP domain LN249_14395 PF00512 His Kinase A (phospho-acceptor) domain LN249_14395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_14400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LN249_14400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LN249_14405 PF00588 SpoU rRNA Methylase family LN249_14410 PF04186 FxsA cytoplasmic membrane protein LN249_14415 PF10415 Fumarase C C-terminus LN249_14415 PF00206 Lyase LN249_14420 PF03605 Anaerobic c4-dicarboxylate membrane transporter LN249_14425 PF02683 Cytochrome C biogenesis protein transmembrane region LN249_14425 PF11412 Disulphide bond corrector protein DsbC LN249_14430 PF00196 Bacterial regulatory proteins, luxR family LN249_14430 PF00072 Response regulator receiver domain LN249_14435 PF02080 TrkA-C domain LN249_14435 PF00999 Sodium/hydrogen exchanger family LN249_14435 PF03471 Transporter associated domain LN249_14445 PF00474 Sodium:solute symporter family LN249_14460 PF00206 Lyase LN249_14460 PF10415 Fumarase C C-terminus LN249_14465 PF00072 Response regulator receiver domain LN249_14465 PF09308 LuxQ, periplasmic LN249_14465 PF00512 His Kinase A (phospho-acceptor) domain LN249_14465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_14470 PF12832 MFS_1 like family LN249_14485 PF16177 Acetyl-coenzyme A synthetase N-terminus LN249_14485 PF00501 AMP-binding enzyme LN249_14485 PF13193 AMP-binding enzyme C-terminal domain LN249_14490 PF01220 Dehydroquinase class II LN249_14495 PF00364 Biotin-requiring enzyme LN249_14500 PF02785 Biotin carboxylase C-terminal domain LN249_14500 PF00289 Biotin carboxylase, N-terminal domain LN249_14500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LN249_14510 PF01207 Dihydrouridine synthase (Dus) LN249_14515 PF02954 Bacterial regulatory protein, Fis family LN249_14525 PF12848 ABC transporter LN249_14525 PF00005 ABC transporter LN249_14580 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LN249_14580 PF01276 Orn/Lys/Arg decarboxylase, major domain LN249_14580 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LN249_14585 PF13520 Amino acid permease LN249_14590 PF00486 Transcriptional regulatory protein, C terminal LN249_14590 PF18500 CadC C-terminal domain 1 LN249_14595 PF13411 MerR HTH family regulatory protein LN249_14600 PF02142 MGS-like domain LN249_14600 PF01808 AICARFT/IMPCHase bienzyme LN249_14605 PF02844 Phosphoribosylglycinamide synthetase, N domain LN249_14605 PF02843 Phosphoribosylglycinamide synthetase, C domain LN249_14605 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LN249_14615 PF00216 Bacterial DNA-binding protein LN249_14620 PF00571 CBS domain LN249_14620 PF01595 Cyclin M transmembrane N-terminal domain LN249_14625 PF04222 Protein of unknown function (DUF416) LN249_14630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LN249_14635 PF03167 Uracil DNA glycosylase superfamily LN249_14640 PF01208 Uroporphyrinogen decarboxylase (URO-D) LN249_14645 PF09297 NADH pyrophosphatase zinc ribbon domain LN249_14645 PF00293 NUDIX domain LN249_14650 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LN249_14655 PF05000 RNA polymerase Rpb1, domain 4 LN249_14655 PF04998 RNA polymerase Rpb1, domain 5 LN249_14655 PF00623 RNA polymerase Rpb1, domain 2 LN249_14655 PF04997 RNA polymerase Rpb1, domain 1 LN249_14655 PF04983 RNA polymerase Rpb1, domain 3 LN249_14660 PF00562 RNA polymerase Rpb2, domain 6 LN249_14660 PF04560 RNA polymerase Rpb2, domain 7 LN249_14660 PF10385 RNA polymerase beta subunit external 1 domain LN249_14660 PF04565 RNA polymerase Rpb2, domain 3 LN249_14660 PF04561 RNA polymerase Rpb2, domain 2 LN249_14660 PF04563 RNA polymerase beta subunit LN249_14665 PF16320 Ribosomal protein L7/L12 dimerisation domain LN249_14665 PF00542 Ribosomal protein L7/L12 C-terminal domain LN249_14670 PF00466 Ribosomal protein L10 LN249_14675 PF00687 Ribosomal protein L1p/L10e family LN249_14680 PF03946 Ribosomal protein L11, N-terminal domain LN249_14680 PF00298 Ribosomal protein L11, RNA binding domain LN249_14685 PF00467 KOW motif LN249_14685 PF02357 Transcription termination factor nusG LN249_14690 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LN249_14720 PF00485 Phosphoribulokinase / Uridine kinase family LN249_14725 PF08279 HTH domain LN249_14725 PF03099 Biotin/lipoate A/B protein ligase family LN249_14725 PF02237 Biotin protein ligase C terminal domain LN249_14730 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LN249_14730 PF01565 FAD binding domain LN249_14740 PF13091 PLD-like domain LN249_14795 PF01177 Asp/Glu/Hydantoin racemase LN249_14805 PF07715 TonB-dependent Receptor Plug Domain LN249_14805 PF00593 TonB dependent receptor LN249_14810 PF05958 tRNA (Uracil-5-)-methyltransferase LN249_14820 PF00440 Bacterial regulatory proteins, tetR family LN249_14825 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_14825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LN249_14830 PF01554 MatE LN249_14835 PF04072 Leucine carboxyl methyltransferase LN249_14840 PF01726 LexA DNA binding domain LN249_14840 PF00717 Peptidase S24-like LN249_14845 PF01553 Acyltransferase LN249_14850 PF01040 UbiA prenyltransferase family LN249_14855 PF04345 Chorismate lyase LN249_14860 PF03748 Flagellar basal body-associated protein FliL LN249_14865 PF01694 Rhomboid family LN249_14865 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LN249_14870 PF00581 Rhodanese-like domain LN249_14875 PF04545 Sigma-70, region 4 LN249_14875 PF04542 Sigma-70 region 2 LN249_14875 PF00140 Sigma-70 factor, region 1.2 LN249_14880 PF18075 FtsX extracellular domain LN249_14885 PF00005 ABC transporter LN249_14890 PF02881 SRP54-type protein, helical bundle domain LN249_14890 PF00448 SRP54-type protein, GTPase domain LN249_14905 PF01914 MarC family integral membrane protein LN249_14925 PF10694 Protein of unknown function (DUF2500) LN249_14945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LN249_14945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LN249_14950 PF01022 Bacterial regulatory protein, arsR family LN249_14955 PF08668 HDOD domain LN249_14955 PF00563 EAL domain LN249_14960 PF01810 LysE type translocator LN249_14965 PF12146 Serine aminopeptidase, S33 LN249_14985 PF03942 DTW domain LN249_14990 PF10442 FIST C domain LN249_14990 PF00563 EAL domain LN249_14990 PF08495 FIST N domain LN249_14990 PF00990 Diguanylate cyclase, GGDEF domain LN249_14995 PF13419 Haloacid dehalogenase-like hydrolase LN249_15000 PF02899 Phage integrase, N-terminal SAM-like domain LN249_15000 PF00589 Phage integrase family LN249_15010 PF01678 Diaminopimelate epimerase LN249_15015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LN249_15015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LN249_15025 PF01491 Frataxin-like domain LN249_15030 PF01295 Adenylate cyclase, class-I LN249_15030 PF12633 Adenylate cyclase NT domain LN249_15035 PF03900 Porphobilinogen deaminase, C-terminal domain LN249_15035 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LN249_15040 PF02602 Uroporphyrinogen-III synthase HemD LN249_15045 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LN249_15050 PF07219 HemY protein N-terminus LN249_15085 PF00175 Oxidoreductase NAD-binding domain LN249_15090 PF00111 2Fe-2S iron-sulfur cluster binding domain LN249_15095 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LN249_15105 PF07497 Rho termination factor, RNA-binding domain LN249_15105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LN249_15105 PF07498 Rho termination factor, N-terminal domain LN249_15110 PF00085 Thioredoxin LN249_15115 PF00271 Helicase conserved C-terminal domain LN249_15115 PF00270 DEAD/DEAH box helicase LN249_15120 PF02541 Ppx/GppA phosphatase family LN249_15125 PF02592 Putative vitamin uptake transporter LN249_15135 PF09382 RQC domain LN249_15135 PF16124 RecQ zinc-binding LN249_15135 PF00570 HRDC domain LN249_15135 PF00271 Helicase conserved C-terminal domain LN249_15135 PF00270 DEAD/DEAH box helicase LN249_15140 PF00892 EamA-like transporter family LN249_15150 PF01810 LysE type translocator LN249_15160 PF13361 UvrD-like helicase C-terminal domain LN249_15160 PF00580 UvrD/REP helicase N-terminal domain LN249_15170 PF05114 Protein of unknown function (DUF692) LN249_15190 PF07690 Major Facilitator Superfamily LN249_15195 PF03466 LysR substrate binding domain LN249_15195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_15200 PF00557 Metallopeptidase family M24 LN249_15200 PF01321 Creatinase/Prolidase N-terminal domain LN249_15200 PF00557 Metallopeptidase family M24 LN249_15200 PF01321 Creatinase/Prolidase N-terminal domain LN249_15205 PF04055 Radical SAM superfamily LN249_15205 PF06968 Biotin and Thiamin Synthesis associated domain LN249_15210 PF05690 Thiazole biosynthesis protein ThiG LN249_15215 PF02597 ThiS family LN249_15220 PF00899 ThiF family LN249_15225 PF02581 Thiamine monophosphate synthase LN249_15230 PF01964 Radical SAM ThiC family LN249_15230 PF13667 ThiC-associated domain LN249_15235 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LN249_15240 PF07731 Multicopper oxidase LN249_15240 PF00394 Multicopper oxidase LN249_15240 PF07732 Multicopper oxidase LN249_15290 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_15295 PF07369 Protein of unknown function (DUF1488) LN249_15300 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LN249_15300 PF01488 Shikimate / quinate 5-dehydrogenase LN249_15300 PF08501 Shikimate dehydrogenase substrate binding domain LN249_15305 PF01218 Coproporphyrinogen III oxidase LN249_15310 PF01300 Telomere recombination LN249_15315 PF00731 AIR carboxylase LN249_15320 PF02222 ATP-grasp domain LN249_15320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LN249_15325 PF01396 Topoisomerase DNA binding C4 zinc finger LN249_15330 PF04361 Protein of unknown function (DUF494) LN249_15335 PF02481 DNA recombination-mediator protein A LN249_15335 PF17782 DprA winged helix domain LN249_15345 PF01327 Polypeptide deformylase LN249_15350 PF00551 Formyl transferase LN249_15350 PF02911 Formyl transferase, C-terminal domain LN249_15355 PF01029 NusB family LN249_15355 PF01189 16S rRNA methyltransferase RsmB/F LN249_15360 PF02254 TrkA-N domain LN249_15360 PF02080 TrkA-C domain LN249_15365 PF02386 Cation transport protein LN249_15375 PF03006 Haemolysin-III related LN249_15380 PF07070 SpoOM protein LN249_15390 PF06288 Protein of unknown function (DUF1040) LN249_15395 PF12801 4Fe-4S binding domain LN249_15395 PF13746 4Fe-4S dicluster domain LN249_15395 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LN249_15400 PF01636 Phosphotransferase enzyme family LN249_15405 PF01323 DSBA-like thioredoxin domain LN249_15410 PF01553 Acyltransferase LN249_15420 PF01078 Magnesium chelatase, subunit ChlI LN249_15420 PF13335 Magnesium chelatase, subunit ChlI C-terminal LN249_15425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LN249_15425 PF00205 Thiamine pyrophosphate enzyme, central domain LN249_15425 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LN249_15435 PF01063 Amino-transferase class IV LN249_15440 PF00920 Dehydratase family LN249_15445 PF00291 Pyridoxal-phosphate dependent enzyme LN249_15445 PF00585 C-terminal regulatory domain of Threonine dehydratase LN249_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_15450 PF03466 LysR substrate binding domain LN249_15455 PF07690 Major Facilitator Superfamily LN249_15460 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_15465 PF00528 Binding-protein-dependent transport system inner membrane component LN249_15470 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_15470 PF12804 MobA-like NTP transferase domain LN249_15475 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LN249_15475 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LN249_15480 PF02874 ATP synthase alpha/beta family, beta-barrel domain LN249_15480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LN249_15485 PF00231 ATP synthase LN249_15490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LN249_15490 PF00306 ATP synthase alpha/beta chain, C terminal domain LN249_15490 PF02874 ATP synthase alpha/beta family, beta-barrel domain LN249_15495 PF00213 ATP synthase delta (OSCP) subunit LN249_15500 PF00430 ATP synthase B/B' CF(0) LN249_15505 PF00137 ATP synthase subunit C LN249_15510 PF00119 ATP synthase A chain LN249_15515 PF03899 ATP synthase I chain LN249_15520 PF17762 HTH domain found in ParB protein LN249_15520 PF02195 ParB-like nuclease domain LN249_15525 PF13614 AAA domain LN249_15530 PF02527 rRNA small subunit methyltransferase G LN249_15535 PF13932 GidA associated domain LN249_15535 PF01134 Glucose inhibited division protein A LN249_15540 PF00258 Flavodoxin LN249_15545 PF01926 50S ribosome-binding GTPase LN249_15545 PF12631 MnmE helical domain LN249_15545 PF10396 GTP-binding protein TrmE N-terminus LN249_15550 PF02096 60Kd inner membrane protein LN249_15550 PF14849 YidC periplasmic domain LN249_15555 PF01809 Putative membrane protein insertion efficiency factor LN249_15560 PF00825 Ribonuclease P LN249_15565 PF00468 Ribosomal protein L34 LN249_15570 PF00005 ABC transporter LN249_15575 PF00528 Binding-protein-dependent transport system inner membrane component LN249_15580 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_15590 PF08329 Chitinase A, N-terminal domain LN249_15590 PF00704 Glycosyl hydrolases family 18 LN249_15595 PF12697 Alpha/beta hydrolase family LN249_15610 PF03600 Citrate transporter LN249_15620 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LN249_15630 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LN249_15630 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LN249_15645 PF07681 DoxX LN249_15650 PF17954 Quercetinase C-terminal cupin domain LN249_15650 PF02678 Pirin LN249_15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_15655 PF03466 LysR substrate binding domain LN249_15670 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LN249_15680 PF03616 Sodium/glutamate symporter LN249_15685 PF00155 Aminotransferase class I and II LN249_15685 PF00392 Bacterial regulatory proteins, gntR family LN249_15690 PF00005 ABC transporter LN249_15700 PF03616 Sodium/glutamate symporter LN249_15715 PF17200 Single Cache domain 2 LN249_15715 PF00672 HAMP domain LN249_15715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_15720 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LN249_15730 PF04397 LytTr DNA-binding domain LN249_15730 PF00072 Response regulator receiver domain LN249_15735 PF07694 5TMR of 5TMR-LYT LN249_15735 PF13492 GAF domain LN249_15735 PF06580 Histidine kinase LN249_15735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_15755 PF00005 ABC transporter LN249_15765 PF01098 Cell cycle protein LN249_15770 PF01709 Transcriptional regulator LN249_15780 PF17149 Periplasmic sensor domain found in signal transduction proteins LN249_15780 PF00672 HAMP domain LN249_15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_15780 PF00512 His Kinase A (phospho-acceptor) domain LN249_15780 PF00072 Response regulator receiver domain LN249_15780 PF01627 Hpt domain LN249_15790 PF00925 GTP cyclohydrolase II LN249_15790 PF08719 Domain of unknown function (DUF1768) LN249_15800 PF00005 ABC transporter LN249_15800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_15805 PF00005 ABC transporter LN249_15805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_15820 PF13614 AAA domain LN249_15820 PF18607 ParA helix turn helix domain LN249_15825 PF08775 ParB family LN249_15825 PF02195 ParB-like nuclease domain LN249_15830 PF13718 GNAT acetyltransferase 2 LN249_15830 PF05127 Helicase LN249_15840 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_15850 PF00267 Gram-negative porin LN249_15855 PF02378 Phosphotransferase system, EIIC LN249_15855 PF00367 phosphotransferase system, EIIB LN249_15860 PF01380 SIS domain LN249_15865 PF01380 SIS domain LN249_15865 PF01418 Helix-turn-helix domain, rpiR family LN249_15870 PF00246 Zinc carboxypeptidase LN249_15875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_15880 PF03358 NADPH-dependent FMN reductase LN249_15895 PF00005 ABC transporter LN249_15895 PF00664 ABC transporter transmembrane region LN249_15895 PF03412 Peptidase C39 family LN249_15910 PF00529 HlyD membrane-fusion protein of T1SS LN249_15915 PF00158 Sigma-54 interaction domain LN249_15915 PF00072 Response regulator receiver domain LN249_15915 PF02954 Bacterial regulatory protein, Fis family LN249_15920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_15920 PF00512 His Kinase A (phospho-acceptor) domain LN249_15920 PF02743 Cache domain LN249_15925 PF01243 Pyridoxamine 5'-phosphate oxidase LN249_15925 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LN249_15935 PF12833 Helix-turn-helix domain LN249_15940 PF01619 Proline dehydrogenase LN249_15940 PF14850 DNA-binding domain of Proline dehydrogenase LN249_15940 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LN249_15940 PF00171 Aldehyde dehydrogenase family LN249_15950 PF00474 Sodium:solute symporter family LN249_15965 PF13302 Acetyltransferase (GNAT) domain LN249_15975 PF01037 Lrp/AsnC ligand binding domain LN249_15985 PF00664 ABC transporter transmembrane region LN249_15985 PF00005 ABC transporter LN249_15995 PF06719 AraC-type transcriptional regulator N-terminus LN249_15995 PF12833 Helix-turn-helix domain LN249_16020 PF03473 MOSC domain LN249_16020 PF03475 3-alpha domain LN249_16040 PF04542 Sigma-70 region 2 LN249_16040 PF08281 Sigma-70, region 4 LN249_16045 PF01965 DJ-1/PfpI family LN249_16045 PF12833 Helix-turn-helix domain LN249_16050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_16050 PF03466 LysR substrate binding domain LN249_16065 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_16065 PF13192 Thioredoxin domain LN249_16070 PF10417 C-terminal domain of 1-Cys peroxiredoxin LN249_16070 PF00578 AhpC/TSA family LN249_16075 PF01047 MarR family LN249_16080 PF02566 OsmC-like protein LN249_16095 PF12704 MacB-like periplasmic core domain LN249_16095 PF02687 FtsX-like permease family LN249_16100 PF00005 ABC transporter LN249_16115 PF00535 Glycosyl transferase family 2 LN249_16125 PF13847 Methyltransferase domain LN249_16130 PF01136 Peptidase family U32 LN249_16140 PF02378 Phosphotransferase system, EIIC LN249_16140 PF00367 phosphotransferase system, EIIB LN249_16145 PF00072 Response regulator receiver domain LN249_16145 PF00486 Transcriptional regulatory protein, C terminal LN249_16150 PF08521 Two-component sensor kinase N-terminal LN249_16150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_16150 PF00512 His Kinase A (phospho-acceptor) domain LN249_16155 PF01547 Bacterial extracellular solute-binding protein LN249_16160 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LN249_16160 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LN249_16165 PF04183 IucA / IucC family LN249_16165 PF06276 Ferric iron reductase FhuF-like transporter LN249_16175 PF06276 Ferric iron reductase FhuF-like transporter LN249_16175 PF04183 IucA / IucC family LN249_16180 PF02655 ATP-grasp domain LN249_16180 PF00206 Lyase LN249_16185 PF07715 TonB-dependent Receptor Plug Domain LN249_16185 PF00593 TonB dependent receptor LN249_16190 PF00593 TonB dependent receptor LN249_16190 PF07715 TonB-dependent Receptor Plug Domain LN249_16190 PF07660 Secretin and TonB N terminus short domain LN249_16195 PF01497 Periplasmic binding protein LN249_16200 PF01032 FecCD transport family LN249_16205 PF01032 FecCD transport family LN249_16210 PF00005 ABC transporter LN249_16215 PF00672 HAMP domain LN249_16215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_16215 PF17200 Single Cache domain 2 LN249_16220 PF00675 Insulinase (Peptidase family M16) LN249_16220 PF05193 Peptidase M16 inactive domain LN249_16230 PF04225 Opacity-associated protein A LysM-like domain LN249_16230 PF01551 Peptidase family M23 LN249_16255 PF07690 Major Facilitator Superfamily LN249_16265 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LN249_16265 PF00128 Alpha amylase, catalytic domain LN249_16270 PF02264 LamB porin LN249_16285 PF16657 Maltogenic Amylase, C-terminal domain LN249_16285 PF00128 Alpha amylase, catalytic domain LN249_16285 PF02903 Alpha amylase, N-terminal ig-like domain LN249_16290 PF04231 Endonuclease I LN249_16295 PF17967 Pullulanase N2 domain LN249_16295 PF18494 Pullulanase Ins domain LN249_16295 PF03714 Bacterial pullanase-associated domain LN249_16295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LN249_16295 PF11852 Domain of unknown function (DUF3372) LN249_16310 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LN249_16310 PF01276 Orn/Lys/Arg decarboxylase, major domain LN249_16310 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LN249_16315 PF13520 Amino acid permease LN249_16325 PF08543 Phosphomethylpyrimidine kinase LN249_16330 PF00375 Sodium:dicarboxylate symporter family LN249_16335 PF03193 RsgA GTPase LN249_16340 PF02378 Phosphotransferase system, EIIC LN249_16340 PF00367 phosphotransferase system, EIIB LN249_16345 PF02630 SCO1/SenC LN249_16360 PF00196 Bacterial regulatory proteins, luxR family LN249_16360 PF17874 MalT-like TPR region LN249_16365 PF00343 Carbohydrate phosphorylase LN249_16370 PF02446 4-alpha-glucanotransferase LN249_16375 PF00128 Alpha amylase, catalytic domain LN249_16375 PF02806 Alpha amylase, C-terminal all-beta domain LN249_16375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LN249_16380 PF00912 Transglycosylase LN249_16385 PF00128 Alpha amylase, catalytic domain LN249_16395 PF07670 Nucleoside recognition LN249_16400 PF07670 Nucleoside recognition LN249_16405 PF01546 Peptidase family M20/M25/M40 LN249_16405 PF07687 Peptidase dimerisation domain LN249_16410 PF06803 Protein of unknown function (DUF1232) LN249_16415 PF00375 Sodium:dicarboxylate symporter family LN249_16425 PF02706 Chain length determinant protein LN249_16425 PF13614 AAA domain LN249_16425 PF13807 G-rich domain on putative tyrosine kinase LN249_16430 PF01451 Low molecular weight phosphotyrosine protein phosphatase LN249_16435 PF02563 Polysaccharide biosynthesis/export protein LN249_16435 PF10531 SLBB domain LN249_16435 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LN249_16445 PF00881 Nitroreductase family LN249_16450 PF01914 MarC family integral membrane protein LN249_16455 PF01734 Patatin-like phospholipase LN249_16460 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LN249_16460 PF18416 N-acetylglucosamine binding protein domain 2 LN249_16470 PF03441 FAD binding domain of DNA photolyase LN249_16470 PF00875 DNA photolyase LN249_16480 PF17773 UPF0176 acylphosphatase like domain LN249_16480 PF00581 Rhodanese-like domain LN249_16490 PF00561 alpha/beta hydrolase fold LN249_16495 PF07943 Penicillin-binding protein 5, C-terminal domain LN249_16495 PF00768 D-alanyl-D-alanine carboxypeptidase LN249_16505 PF00881 Nitroreductase family LN249_16515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_16515 PF03466 LysR substrate binding domain LN249_16520 PF09905 DNA-binding protein VF530 LN249_16530 PF00970 Oxidoreductase FAD-binding domain LN249_16530 PF00175 Oxidoreductase NAD-binding domain LN249_16535 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LN249_16540 PF01594 AI-2E family transporter LN249_16550 PF00529 HlyD membrane-fusion protein of T1SS LN249_16550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_16570 PF00892 EamA-like transporter family LN249_16575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_16575 PF03466 LysR substrate binding domain LN249_16580 PF07690 Major Facilitator Superfamily LN249_16590 PF00583 Acetyltransferase (GNAT) family LN249_16600 PF00923 Transaldolase/Fructose-6-phosphate aldolase LN249_16605 PF04055 Radical SAM superfamily LN249_16610 PF01228 Glycine radical LN249_16610 PF02901 Pyruvate formate lyase-like LN249_16645 PF08000 Bacterial PH domain LN249_16660 PF13677 Membrane MotB of proton-channel complex MotA/MotB LN249_16660 PF00691 OmpA family LN249_16665 PF01618 MotA/TolQ/ExbB proton channel family LN249_16670 PF04545 Sigma-70, region 4 LN249_16670 PF04542 Sigma-70 region 2 LN249_16675 PF03748 Flagellar basal body-associated protein FliL LN249_16690 PF02561 Flagellar protein FliS LN249_16695 PF07196 Flagellin hook IN motif LN249_16695 PF02465 Flagellar hook-associated protein 2 N-terminus LN249_16695 PF07195 Flagellar hook-associated protein 2 C-terminus LN249_16705 PF00669 Bacterial flagellin N-terminal helical region LN249_16705 PF00700 Bacterial flagellin C-terminal helical region LN249_16715 PF00771 FHIPEP family LN249_16720 PF01312 FlhB HrpN YscU SpaS Family LN249_16725 PF01311 Bacterial export proteins, family 1 LN249_16730 PF01313 Bacterial export proteins, family 3 LN249_16735 PF00813 FliP family LN249_16740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LN249_16755 PF00158 Sigma-54 interaction domain LN249_16755 PF00072 Response regulator receiver domain LN249_16755 PF02954 Bacterial regulatory protein, Fis family LN249_16760 PF02049 Flagellar hook-basal body complex protein FliE LN249_16765 PF01514 Secretory protein of YscJ/FliF family LN249_16765 PF08345 Flagellar M-ring protein C-terminal LN249_16770 PF01706 FliG C-terminal domain LN249_16770 PF14841 FliG middle domain LN249_16770 PF14842 FliG N-terminal domain LN249_16780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LN249_16780 PF18269 T3SS EscN ATPase C-terminal domain LN249_16795 PF03466 LysR substrate binding domain LN249_16795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_16825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_16830 PF03466 LysR substrate binding domain LN249_16830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_16850 PF00486 Transcriptional regulatory protein, C terminal LN249_16850 PF00072 Response regulator receiver domain LN249_16855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_16855 PF00512 His Kinase A (phospho-acceptor) domain LN249_16860 PF00080 Copper/zinc superoxide dismutase (SODC) LN249_16870 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_16875 PF00563 EAL domain LN249_16875 PF03707 Bacterial signalling protein N terminal repeat LN249_16875 PF13188 PAS domain LN249_16875 PF00990 Diguanylate cyclase, GGDEF domain LN249_16880 PF00155 Aminotransferase class I and II LN249_16885 PF08240 Alcohol dehydrogenase GroES-like domain LN249_16885 PF00107 Zinc-binding dehydrogenase LN249_16915 PF00194 Eukaryotic-type carbonic anhydrase LN249_16920 PF00924 Mechanosensitive ion channel LN249_16930 PF01070 FMN-dependent dehydrogenase LN249_16935 PF02652 L-lactate permease LN249_16940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_16940 PF03466 LysR substrate binding domain LN249_16945 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LN249_16945 PF00326 Prolyl oligopeptidase family LN249_16950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LN249_16950 PF00005 ABC transporter LN249_16960 PF05362 Lon protease (S16) C-terminal proteolytic domain LN249_16960 PF13654 AAA domain LN249_16965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_16965 PF17200 Single Cache domain 2 LN249_16965 PF00672 HAMP domain LN249_16970 PF13609 Gram-negative porin LN249_16975 PF07238 PilZ domain LN249_16975 PF12945 Flagellar protein YcgR LN249_16990 PF00583 Acetyltransferase (GNAT) family LN249_16995 PF12838 4Fe-4S dicluster domain LN249_16995 PF12800 4Fe-4S binding domain LN249_17000 PF13237 4Fe-4S dicluster domain LN249_17000 PF12801 4Fe-4S binding domain LN249_17020 PF12558 ATP-binding cassette cobalt transporter LN249_17020 PF00005 ABC transporter LN249_17025 PF07155 ECF-type riboflavin transporter, S component LN249_17030 PF00529 HlyD membrane-fusion protein of T1SS LN249_17030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_17035 PF11742 Protein of unknown function (DUF3302) LN249_17040 PF00990 Diguanylate cyclase, GGDEF domain LN249_17055 PF01048 Phosphorylase superfamily LN249_17060 PF08349 Protein of unknown function (DUF1722) LN249_17065 PF13411 MerR HTH family regulatory protein LN249_17070 PF00875 DNA photolyase LN249_17070 PF03441 FAD binding domain of DNA photolyase LN249_17075 PF17969 L,D-transpeptidase C-terminal domain LN249_17075 PF01476 LysM domain LN249_17075 PF03734 L,D-transpeptidase catalytic domain LN249_17085 PF00271 Helicase conserved C-terminal domain LN249_17085 PF00270 DEAD/DEAH box helicase LN249_17090 PF00326 Prolyl oligopeptidase family LN249_17090 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LN249_17095 PF07715 TonB-dependent Receptor Plug Domain LN249_17095 PF00593 TonB dependent receptor LN249_17115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_17115 PF00672 HAMP domain LN249_17120 PF12849 PBP superfamily domain LN249_17125 PF00528 Binding-protein-dependent transport system inner membrane component LN249_17130 PF00528 Binding-protein-dependent transport system inner membrane component LN249_17135 PF00005 ABC transporter LN249_17150 PF13519 von Willebrand factor type A domain LN249_17155 PF13519 von Willebrand factor type A domain LN249_17165 PF01882 Protein of unknown function DUF58 LN249_17170 PF07726 ATPase family associated with various cellular activities (AAA) LN249_17170 PF17863 AAA lid domain LN249_17185 PF00196 Bacterial regulatory proteins, luxR family LN249_17190 PF00196 Bacterial regulatory proteins, luxR family LN249_17200 PF00664 ABC transporter transmembrane region LN249_17200 PF00005 ABC transporter LN249_17205 PF00529 HlyD membrane-fusion protein of T1SS LN249_17215 PF01032 FecCD transport family LN249_17220 PF01497 Periplasmic binding protein LN249_17225 PF00005 ABC transporter LN249_17230 PF07715 TonB-dependent Receptor Plug Domain LN249_17230 PF00593 TonB dependent receptor LN249_17235 PF00664 ABC transporter transmembrane region LN249_17235 PF00005 ABC transporter LN249_17240 PF00512 His Kinase A (phospho-acceptor) domain LN249_17240 PF13493 Domain of unknown function (DUF4118) LN249_17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_17240 PF02702 Osmosensitive K+ channel His kinase sensor domain LN249_17240 PF02702 Osmosensitive K+ channel His kinase sensor domain LN249_17240 PF13493 Domain of unknown function (DUF4118) LN249_17240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_17240 PF00512 His Kinase A (phospho-acceptor) domain LN249_17245 PF00072 Response regulator receiver domain LN249_17245 PF00486 Transcriptional regulatory protein, C terminal LN249_17250 PF02254 TrkA-N domain LN249_17250 PF02080 TrkA-C domain LN249_17255 PF02386 Cation transport protein LN249_17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_17260 PF03466 LysR substrate binding domain LN249_17265 PF02028 BCCT, betaine/carnitine/choline family transporter LN249_17270 PF00355 Rieske [2Fe-2S] domain LN249_17270 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LN249_17275 PF00171 Aldehyde dehydrogenase family LN249_17285 PF18113 Rubredoxin binding C-terminal domain LN249_17285 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_17290 PF01266 FAD dependent oxidoreductase LN249_17300 PF02378 Phosphotransferase system, EIIC LN249_17305 PF00127 Copper binding proteins, plastocyanin/azurin family LN249_17310 PF13419 Haloacid dehalogenase-like hydrolase LN249_17315 PF01590 GAF domain LN249_17315 PF00158 Sigma-54 interaction domain LN249_17320 PF00301 Rubredoxin LN249_17320 PF00258 Flavodoxin LN249_17320 PF00753 Metallo-beta-lactamase superfamily LN249_17325 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_17325 PF18113 Rubredoxin binding C-terminal domain LN249_17335 PF01238 Phosphomannose isomerase type I LN249_17340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LN249_17340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LN249_17345 PF12833 Helix-turn-helix domain LN249_17355 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LN249_17365 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LN249_17365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LN249_17370 PF00199 Catalase LN249_17370 PF06628 Catalase-related immune-responsive LN249_17375 PF13417 Glutathione S-transferase, N-terminal domain LN249_17380 PF16884 N-terminal domain of oxidoreductase LN249_17380 PF00107 Zinc-binding dehydrogenase LN249_17385 PF16925 Tetracyclin repressor-like, C-terminal domain LN249_17385 PF00440 Bacterial regulatory proteins, tetR family LN249_17390 PF04266 ASCH domain LN249_17420 PF13439 Glycosyltransferase Family 4 LN249_17420 PF00534 Glycosyl transferases group 1 LN249_17430 PF13807 G-rich domain on putative tyrosine kinase LN249_17430 PF13614 AAA domain LN249_17430 PF02706 Chain length determinant protein LN249_17445 PF02397 Bacterial sugar transferase LN249_17450 PF00005 ABC transporter LN249_17450 PF08402 TOBE domain LN249_17455 PF01547 Bacterial extracellular solute-binding protein LN249_17460 PF00528 Binding-protein-dependent transport system inner membrane component LN249_17460 PF14785 Maltose transport system permease protein MalF P2 domain LN249_17495 PF05661 Protein of unknown function (DUF808) LN249_17500 PF01979 Amidohydrolase family LN249_17505 PF01679 Proteolipid membrane potential modulator LN249_17510 PF00111 2Fe-2S iron-sulfur cluster binding domain LN249_17510 PF03473 MOSC domain LN249_17510 PF03476 MOSC N-terminal beta barrel domain LN249_17510 PF00111 2Fe-2S iron-sulfur cluster binding domain LN249_17510 PF03473 MOSC domain LN249_17510 PF03476 MOSC N-terminal beta barrel domain LN249_17515 PF02540 NAD synthase LN249_17520 PF01467 Cytidylyltransferase-like LN249_17560 PF00005 ABC transporter LN249_17565 PF01032 FecCD transport family LN249_17575 PF02472 Biopolymer transport protein ExbD/TolR LN249_17580 PF01618 MotA/TolQ/ExbB proton channel family LN249_17585 PF03544 Gram-negative bacterial TonB protein C-terminal LN249_17590 PF04055 Radical SAM superfamily LN249_17595 PF06228 Haem utilisation ChuX/HutX LN249_17600 PF01243 Pyridoxamine 5'-phosphate oxidase LN249_17610 PF01584 CheW-like domain LN249_17610 PF00072 Response regulator receiver domain LN249_17630 PF02583 Metal-sensitive transcriptional repressor LN249_17635 PF03824 High-affinity nickel-transport protein LN249_17645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_17645 PF00672 HAMP domain LN249_17645 PF02743 Cache domain LN249_17650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_17650 PF03466 LysR substrate binding domain LN249_17655 PF01039 Carboxyl transferase domain LN249_17655 PF17848 Acetyl-coA carboxylase zinc finger domain LN249_17665 PF01752 Collagenase LN249_17665 PF08453 Peptidase family M9 N-terminal LN249_17665 PF04151 Bacterial pre-peptidase C-terminal domain LN249_17675 PF02627 Carboxymuconolactone decarboxylase family LN249_17680 PF13411 MerR HTH family regulatory protein LN249_17685 PF00128 Alpha amylase, catalytic domain LN249_17700 PF00999 Sodium/hydrogen exchanger family LN249_17700 PF02254 TrkA-N domain LN249_17705 PF02525 Flavodoxin-like fold LN249_17710 PF00582 Universal stress protein family LN249_17715 PF00005 ABC transporter LN249_17715 PF12848 ABC transporter LN249_17720 PF00326 Prolyl oligopeptidase family LN249_17720 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LN249_17730 PF13533 Biotin-lipoyl like LN249_17735 PF00873 AcrB/AcrD/AcrF family LN249_17740 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LN249_17750 PF13302 Acetyltransferase (GNAT) domain LN249_17760 PF17151 Periplasmic sensor domain LN249_17760 PF00990 Diguanylate cyclase, GGDEF domain LN249_17780 PF00873 AcrB/AcrD/AcrF family LN249_17800 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LN249_17800 PF01568 Molydopterin dinucleotide binding domain LN249_17800 PF00384 Molybdopterin oxidoreductase LN249_17800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LN249_17800 PF12838 4Fe-4S dicluster domain LN249_17820 PF00005 ABC transporter LN249_17830 PF10282 Lactonase, 7-bladed beta-propeller LN249_17835 PF02567 Phenazine biosynthesis-like protein LN249_17840 PF01161 Phosphatidylethanolamine-binding protein LN249_17850 PF01758 Sodium Bile acid symporter family LN249_17865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LN249_17870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LN249_17870 PF02378 Phosphotransferase system, EIIC LN249_17875 PF08240 Alcohol dehydrogenase GroES-like domain LN249_17875 PF00107 Zinc-binding dehydrogenase LN249_17905 PF03222 Tryptophan/tyrosine permease family LN249_17915 PF00672 HAMP domain LN249_17915 PF02743 Cache domain LN249_17915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_17920 PF07670 Nucleoside recognition LN249_17940 PF01551 Peptidase family M23 LN249_17940 PF08525 Opacity-associated protein A N-terminal motif LN249_17940 PF01476 LysM domain LN249_17945 PF00563 EAL domain LN249_17945 PF08447 PAS fold LN249_17945 PF08448 PAS fold LN249_17945 PF00990 Diguanylate cyclase, GGDEF domain LN249_17950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_17950 PF03466 LysR substrate binding domain LN249_17955 PF07690 Major Facilitator Superfamily LN249_17965 PF00462 Glutaredoxin LN249_17970 PF00892 EamA-like transporter family LN249_17985 PF01557 Fumarylacetoacetate (FAA) hydrolase family LN249_18000 PF12833 Helix-turn-helix domain LN249_18005 PF01810 LysE type translocator LN249_18015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LN249_18015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LN249_18015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LN249_18015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LN249_18020 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LN249_18020 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LN249_18025 PF00115 Cytochrome C and Quinol oxidase polypeptide I LN249_18030 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 LN249_18035 PF00510 Cytochrome c oxidase subunit III LN249_18055 PF02628 Cytochrome oxidase assembly protein LN249_18060 PF01040 UbiA prenyltransferase family LN249_18065 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LN249_18065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LN249_18075 PF13488 Glycine zipper LN249_18075 PF00691 OmpA family LN249_18095 PF00313 'Cold-shock' DNA-binding domain LN249_18100 PF03889 Alternative ribosome-rescue factor A LN249_18105 PF00990 Diguanylate cyclase, GGDEF domain LN249_18120 PF00005 ABC transporter LN249_18120 PF02687 FtsX-like permease family LN249_18120 PF12704 MacB-like periplasmic core domain LN249_18125 PF02687 FtsX-like permease family LN249_18125 PF12704 MacB-like periplasmic core domain LN249_18125 PF00005 ABC transporter LN249_18135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_18135 PF00672 HAMP domain LN249_18140 PF00210 Ferritin-like domain LN249_18150 PF07995 Glucose / Sorbosone dehydrogenase LN249_18155 PF00465 Iron-containing alcohol dehydrogenase LN249_18170 PF00892 EamA-like transporter family LN249_18190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_18190 PF03466 LysR substrate binding domain LN249_18200 PF00501 AMP-binding enzyme LN249_18200 PF13193 AMP-binding enzyme C-terminal domain LN249_18205 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LN249_18210 PF01329 Pterin 4 alpha carbinolamine dehydratase LN249_18230 PF12843 Putative quorum-sensing-regulated virulence factor LN249_18245 PF04151 Bacterial pre-peptidase C-terminal domain LN249_18245 PF00082 Subtilase family LN249_18245 PF05922 Peptidase inhibitor I9 LN249_18295 PF01925 Sulfite exporter TauE/SafE LN249_18305 PF03466 LysR substrate binding domain LN249_18305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_18310 PF07690 Major Facilitator Superfamily LN249_18320 PF00270 DEAD/DEAH box helicase LN249_18320 PF00271 Helicase conserved C-terminal domain LN249_18325 PF09905 DNA-binding protein VF530 LN249_18335 PF00291 Pyridoxal-phosphate dependent enzyme LN249_18340 PF17876 Cold shock domain LN249_18340 PF08461 Ribonuclease R winged-helix domain LN249_18340 PF08206 Ribonuclease B OB domain LN249_18340 PF00575 S1 RNA binding domain LN249_18340 PF00773 RNB domain LN249_18345 PF00313 'Cold-shock' DNA-binding domain LN249_18355 PF01470 Pyroglutamyl peptidase LN249_18365 PF07683 Cobalamin synthesis protein cobW C-terminal domain LN249_18365 PF02492 CobW/HypB/UreG, nucleotide-binding domain LN249_18370 PF00270 DEAD/DEAH box helicase LN249_18370 PF00271 Helicase conserved C-terminal domain LN249_18390 PF12792 CSS motif domain associated with EAL LN249_18390 PF00563 EAL domain LN249_18395 PF00005 ABC transporter LN249_18400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_18400 PF08447 PAS fold LN249_18410 PF01575 MaoC like domain LN249_18415 PF12849 PBP superfamily domain LN249_18425 PF12833 Helix-turn-helix domain LN249_18430 PF00575 S1 RNA binding domain LN249_18430 PF08206 Ribonuclease B OB domain LN249_18430 PF00773 RNB domain LN249_18435 PF03880 DbpA RNA binding domain LN249_18435 PF00270 DEAD/DEAH box helicase LN249_18435 PF00271 Helicase conserved C-terminal domain LN249_18440 PF00990 Diguanylate cyclase, GGDEF domain LN249_18440 PF03707 Bacterial signalling protein N terminal repeat LN249_18440 PF00563 EAL domain LN249_18445 PF00871 Acetokinase family LN249_18450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_18450 PF08447 PAS fold LN249_18450 PF13426 PAS domain LN249_18455 PF00528 Binding-protein-dependent transport system inner membrane component LN249_18460 PF00571 CBS domain LN249_18460 PF00005 ABC transporter LN249_18465 PF00528 Binding-protein-dependent transport system inner membrane component LN249_18470 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LN249_18475 PF00795 Carbon-nitrogen hydrolase LN249_18485 PF01965 DJ-1/PfpI family LN249_18485 PF12833 Helix-turn-helix domain LN249_18490 PF00561 alpha/beta hydrolase fold LN249_18495 PF04909 Amidohydrolase LN249_18500 PF02913 FAD linked oxidases, C-terminal domain LN249_18500 PF13183 4Fe-4S dicluster domain LN249_18500 PF01565 FAD binding domain LN249_18510 PF10063 Uncharacterized integral membrane protein (DUF2301) LN249_18515 PF00682 HMGL-like LN249_18520 PF00378 Enoyl-CoA hydratase/isomerase LN249_18525 PF01039 Carboxyl transferase domain LN249_18530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LN249_18530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LN249_18530 PF02770 Acyl-CoA dehydrogenase, middle domain LN249_18535 PF00376 MerR family regulatory protein LN249_18535 PF09278 MerR, DNA binding LN249_18540 PF00108 Thiolase, N-terminal domain LN249_18540 PF02803 Thiolase, C-terminal domain LN249_18545 PF00171 Aldehyde dehydrogenase family LN249_18550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LN249_18550 PF02770 Acyl-CoA dehydrogenase, middle domain LN249_18550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LN249_18555 PF00378 Enoyl-CoA hydratase/isomerase LN249_18560 PF00378 Enoyl-CoA hydratase/isomerase LN249_18565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LN249_18565 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LN249_18575 PF06481 COX Aromatic Rich Motif LN249_18575 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LN249_18580 PF00115 Cytochrome C and Quinol oxidase polypeptide I LN249_18585 PF00510 Cytochrome c oxidase subunit III LN249_18595 PF01040 UbiA prenyltransferase family LN249_18605 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_18605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LN249_18610 PF01565 FAD binding domain LN249_18610 PF08031 Berberine and berberine like LN249_18625 PF00171 Aldehyde dehydrogenase family LN249_18635 PF02028 BCCT, betaine/carnitine/choline family transporter LN249_18665 PF00005 ABC transporter LN249_18670 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_18675 PF00528 Binding-protein-dependent transport system inner membrane component LN249_18680 PF00528 Binding-protein-dependent transport system inner membrane component LN249_18695 PF01389 OmpA-like transmembrane domain LN249_18695 PF00691 OmpA family LN249_18715 PF00766 Electron transfer flavoprotein FAD-binding domain LN249_18715 PF01012 Electron transfer flavoprotein domain LN249_18720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LN249_18720 PF00364 Biotin-requiring enzyme LN249_18720 PF02817 e3 binding domain LN249_18725 PF02779 Transketolase, pyrimidine binding domain LN249_18725 PF02780 Transketolase, C-terminal domain LN249_18730 PF00676 Dehydrogenase E1 component LN249_18745 PF00012 Hsp70 protein LN249_18750 PF04314 Copper chaperone PCu(A)C LN249_18785 PF00072 Response regulator receiver domain LN249_18785 PF00486 Transcriptional regulatory protein, C terminal LN249_18805 PF00082 Subtilase family LN249_18805 PF01483 Proprotein convertase P-domain LN249_18815 PF00990 Diguanylate cyclase, GGDEF domain LN249_18820 PF03222 Tryptophan/tyrosine permease family LN249_18830 PF00384 Molybdopterin oxidoreductase LN249_18830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LN249_18830 PF01568 Molydopterin dinucleotide binding domain LN249_18835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LN249_18835 PF14824 Sirohaem biosynthesis protein central LN249_18835 PF10414 Sirohaem synthase dimerisation region LN249_18840 PF00591 Glycosyl transferase family, a/b domain LN249_18840 PF02885 Glycosyl transferase family, helical bundle domain LN249_18845 PF01738 Dienelactone hydrolase family LN249_18850 PF00072 Response regulator receiver domain LN249_18850 PF03861 ANTAR domain LN249_18855 PF00005 ABC transporter LN249_18860 PF00528 Binding-protein-dependent transport system inner membrane component LN249_18865 PF00005 ABC transporter LN249_18870 PF04324 BFD-like [2Fe-2S] binding domain LN249_18870 PF18267 Rubredoxin NAD+ reductase C-terminal domain LN249_18870 PF13806 Rieske-like [2Fe-2S] domain LN249_18870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LN249_18870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LN249_18870 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_18885 PF08361 MAATS-type transcriptional repressor, C-terminal region LN249_18885 PF00440 Bacterial regulatory proteins, tetR family LN249_18890 PF13417 Glutathione S-transferase, N-terminal domain LN249_18890 PF00043 Glutathione S-transferase, C-terminal domain LN249_18900 PF00211 Adenylate and Guanylate cyclase catalytic domain LN249_18900 PF00072 Response regulator receiver domain LN249_18920 PF03793 PASTA domain LN249_18920 PF00069 Protein kinase domain LN249_18935 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LN249_18940 PF13677 Membrane MotB of proton-channel complex MotA/MotB LN249_18940 PF00691 OmpA family LN249_18945 PF06761 Intracellular multiplication and human macrophage-killing LN249_18945 PF14331 ImcF-related N-terminal domain LN249_18945 PF06744 Type VI secretion protein IcmF C-terminal LN249_18965 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LN249_18970 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LN249_18975 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LN249_18990 PF05947 Type VI secretion system, TssF LN249_19000 PF07724 AAA domain (Cdc48 subfamily) LN249_19000 PF00004 ATPase family associated with various cellular activities (AAA) LN249_19000 PF10431 C-terminal, D2-small domain, of ClpB protein LN249_19000 PF17871 AAA lid domain LN249_19010 PF04717 Type VI secretion system, phage-baseplate injector LN249_19010 PF06715 Gp5 C-terminal repeat (3 copies) LN249_19025 PF12320 Type 5 capsule protein repressor C-terminal domain LN249_19025 PF00149 Calcineurin-like phosphoesterase LN249_19030 PF13476 AAA domain LN249_19035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_19035 PF03466 LysR substrate binding domain LN249_19045 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LN249_19045 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LN249_19055 PF03480 Bacterial extracellular solute-binding protein, family 7 LN249_19060 PF01266 FAD dependent oxidoreductase LN249_19070 PF04324 BFD-like [2Fe-2S] binding domain LN249_19070 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_19075 PF01042 Endoribonuclease L-PSP LN249_19085 PF08212 Lipocalin-like domain LN249_19095 PF03606 C4-dicarboxylate anaerobic carrier LN249_19105 PF01212 Beta-eliminating lyase LN249_19115 PF12592 Protein of unknown function (DUF3763) LN249_19115 PF17868 AAA lid domain LN249_19115 PF07728 AAA domain (dynein-related subfamily) LN249_19120 PF05762 VWA domain containing CoxE-like protein LN249_19135 PF03466 LysR substrate binding domain LN249_19135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_19140 PF01565 FAD binding domain LN249_19140 PF09330 D-lactate dehydrogenase, membrane binding LN249_19155 PF01168 Alanine racemase, N-terminal domain LN249_19155 PF00842 Alanine racemase, C-terminal domain LN249_19160 PF00672 HAMP domain LN249_19160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_19175 PF09154 Domain of unknown function (DUF1939) LN249_19175 PF00128 Alpha amylase, catalytic domain LN249_19225 PF00563 EAL domain LN249_19225 PF13426 PAS domain LN249_19225 PF00990 Diguanylate cyclase, GGDEF domain LN249_19230 PF01272 Transcription elongation factor, GreA/GreB, C-term LN249_19230 PF14760 Rnk N-terminus LN249_19235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LN249_19235 PF04324 BFD-like [2Fe-2S] binding domain LN249_19235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LN249_19235 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_19235 PF18267 Rubredoxin NAD+ reductase C-terminal domain LN249_19240 PF13806 Rieske-like [2Fe-2S] domain LN249_19245 PF01226 Formate/nitrite transporter LN249_19250 PF14824 Sirohaem biosynthesis protein central LN249_19250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LN249_19250 PF10414 Sirohaem synthase dimerisation region LN249_19265 PF03605 Anaerobic c4-dicarboxylate membrane transporter LN249_19275 PF07715 TonB-dependent Receptor Plug Domain LN249_19275 PF00593 TonB dependent receptor LN249_19290 PF11756 Nitrous oxide-stimulated promoter LN249_19295 PF07690 Major Facilitator Superfamily LN249_19300 PF00085 Thioredoxin LN249_19305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LN249_19305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LN249_19325 PF01238 Phosphomannose isomerase type I LN249_19330 PF07690 Major Facilitator Superfamily LN249_19335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_19335 PF05231 MASE1 LN249_19335 PF07730 Histidine kinase LN249_19340 PF00072 Response regulator receiver domain LN249_19340 PF00196 Bacterial regulatory proteins, luxR family LN249_19345 PF07690 Major Facilitator Superfamily LN249_19350 PF02634 FdhD/NarQ family LN249_19355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_19355 PF03466 LysR substrate binding domain LN249_19360 PF00384 Molybdopterin oxidoreductase LN249_19370 PF02567 Phenazine biosynthesis-like protein LN249_19380 PF07992 Pyridine nucleotide-disulphide oxidoreductase LN249_19380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LN249_19395 PF04143 Sulphur transport LN249_19405 PF00873 AcrB/AcrD/AcrF family LN249_19410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_19420 PF03477 ATP cone domain LN249_19420 PF13597 Anaerobic ribonucleoside-triphosphate reductase LN249_19430 PF01554 MatE LN249_19435 PF12852 Cupin LN249_19435 PF12833 Helix-turn-helix domain LN249_19440 PF00155 Aminotransferase class I and II LN249_19445 PF18030 RimK PreATP-grasp domain LN249_19445 PF08443 RimK-like ATP-grasp domain LN249_19455 PF04076 Bacterial OB fold (BOF) protein LN249_19460 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LN249_19460 PF07685 CobB/CobQ-like glutamine amidotransferase domain LN249_19470 PF00528 Binding-protein-dependent transport system inner membrane component LN249_19475 PF00005 ABC transporter LN249_19475 PF03459 TOBE domain LN249_19485 PF00563 EAL domain LN249_19485 PF00360 Phytochrome region LN249_19485 PF00990 Diguanylate cyclase, GGDEF domain LN249_19485 PF01590 GAF domain LN249_19495 PF00990 Diguanylate cyclase, GGDEF domain LN249_19510 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LN249_19510 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LN249_19510 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LN249_19665 PF03354 Phage Terminase LN249_19790 PF00486 Transcriptional regulatory protein, C terminal LN249_19790 PF00072 Response regulator receiver domain LN249_19805 PF03701 Uncharacterised protein family (UPF0181) LN249_19810 PF00582 Universal stress protein family LN249_19820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_19820 PF03466 LysR substrate binding domain LN249_19915 PF01253 Translation initiation factor SUI1 LN249_19925 PF01820 D-ala D-ala ligase N-terminus LN249_19925 PF07478 D-ala D-ala ligase C-terminus LN249_19930 PF05036 Sporulation related domain LN249_19935 PF13607 Succinyl-CoA ligase like flavodoxin domain LN249_19935 PF13380 CoA binding domain LN249_19935 PF00583 Acetyltransferase (GNAT) family LN249_19940 PF03466 LysR substrate binding domain LN249_19940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_19945 PF07715 TonB-dependent Receptor Plug Domain LN249_19945 PF04886 PT repeat LN249_19945 PF00593 TonB dependent receptor LN249_19950 PF16363 GDP-mannose 4,6 dehydratase LN249_19955 PF13426 PAS domain LN249_19955 PF08448 PAS fold LN249_19955 PF08447 PAS fold LN249_19955 PF05231 MASE1 LN249_19955 PF00563 EAL domain LN249_19955 PF00990 Diguanylate cyclase, GGDEF domain LN249_19960 PF03746 LamB/YcsF family LN249_19965 PF02682 Carboxyltransferase domain, subdomain C and D LN249_19970 PF02626 Carboxyltransferase domain, subdomain A and B LN249_19985 PF00005 ABC transporter LN249_19990 PF13472 GDSL-like Lipase/Acylhydrolase family LN249_19995 PF07055 Enoyl reductase FAD binding domain LN249_19995 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LN249_19995 PF12241 Trans-2-enoyl-CoA reductase catalytic region LN249_20000 PF00990 Diguanylate cyclase, GGDEF domain LN249_20000 PF00563 EAL domain LN249_20000 PF00498 FHA domain LN249_20010 PF01556 DnaJ C terminal domain LN249_20010 PF00226 DnaJ domain LN249_20010 PF00684 DnaJ central domain LN249_20035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LN249_20035 PF12793 Sugar transport-related sRNA regulator N-term LN249_20045 PF03061 Thioesterase superfamily LN249_20060 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LN249_20065 PF12262 Bacterial virulence factor lipase N-terminal LN249_20085 PF03741 Integral membrane protein TerC family LN249_20090 PF02872 5'-nucleotidase, C-terminal domain LN249_20090 PF00149 Calcineurin-like phosphoesterase LN249_20095 PF11398 Protein of unknown function (DUF2813) LN249_20100 PF06496 Protein of unknown function (DUF1097) LN249_20105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_20105 PF03466 LysR substrate binding domain LN249_20110 PF01226 Formate/nitrite transporter LN249_20115 PF04264 YceI-like domain LN249_20120 PF01292 Prokaryotic cytochrome b561 LN249_20135 PF12792 CSS motif domain associated with EAL LN249_20135 PF00563 EAL domain LN249_20140 PF00271 Helicase conserved C-terminal domain LN249_20140 PF00270 DEAD/DEAH box helicase LN249_20145 PF04336 Acyl carrier protein phosphodiesterase LN249_20150 PF17200 Single Cache domain 2 LN249_20150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_20150 PF00672 HAMP domain LN249_20155 PF13419 Haloacid dehalogenase-like hydrolase LN249_20170 PF00294 pfkB family carbohydrate kinase LN249_20175 PF01268 Formate--tetrahydrofolate ligase LN249_20180 PF00483 Nucleotidyl transferase LN249_20185 PF00704 Glycosyl hydrolases family 18 LN249_20185 PF06483 Chitinase C LN249_20190 PF12833 Helix-turn-helix domain LN249_20190 PF06719 AraC-type transcriptional regulator N-terminus LN249_20195 PF00465 Iron-containing alcohol dehydrogenase LN249_20205 PF00005 ABC transporter LN249_20210 PF00528 Binding-protein-dependent transport system inner membrane component LN249_20215 PF00497 Bacterial extracellular solute-binding proteins, family 3 LN249_20220 PF00528 Binding-protein-dependent transport system inner membrane component LN249_20225 PF00989 PAS fold LN249_20225 PF01590 GAF domain LN249_20225 PF00563 EAL domain LN249_20225 PF00990 Diguanylate cyclase, GGDEF domain LN249_20240 PF00356 Bacterial regulatory proteins, lacI family LN249_20240 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LN249_20245 PF00381 PTS HPr component phosphorylation site LN249_20245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LN249_20250 PF00294 pfkB family carbohydrate kinase LN249_20255 PF02378 Phosphotransferase system, EIIC LN249_20255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LN249_20265 PF00873 AcrB/AcrD/AcrF family LN249_20275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_20285 PF08669 Glycine cleavage T-protein C-terminal barrel domain LN249_20285 PF01571 Aminomethyltransferase folate-binding domain LN249_20295 PF00464 Serine hydroxymethyltransferase LN249_20300 PF01597 Glycine cleavage H-protein LN249_20305 PF02347 Glycine cleavage system P-protein LN249_20335 PF11490 DNA polymerase III polC-type N-terminus II LN249_20335 PF07733 Bacterial DNA polymerase III alpha NTPase domain LN249_20335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LN249_20335 PF14579 Helix-hairpin-helix motif LN249_20335 PF02811 PHP domain LN249_20335 PF00929 Exonuclease LN249_20340 PF00664 ABC transporter transmembrane region LN249_20340 PF00005 ABC transporter LN249_20360 PF02253 Phospholipase A1 LN249_20370 PF00376 MerR family regulatory protein LN249_20370 PF09278 MerR, DNA binding LN249_20375 PF01327 Polypeptide deformylase LN249_20415 PF00571 CBS domain LN249_20415 PF01769 Divalent cation transporter LN249_20415 PF03448 MgtE intracellular N domain LN249_20435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_20440 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LN249_20450 PF01757 Acyltransferase family LN249_20460 PF09722 Protein of unknown function (DUF2384) LN249_20465 PF00141 Peroxidase LN249_20470 PF01645 Conserved region in glutamate synthase LN249_20470 PF13187 4Fe-4S dicluster domain LN249_20480 PF00171 Aldehyde dehydrogenase family LN249_20495 PF00892 EamA-like transporter family LN249_20500 PF00893 Small Multidrug Resistance protein LN249_20505 PF04151 Bacterial pre-peptidase C-terminal domain LN249_20505 PF07504 Fungalysin/Thermolysin Propeptide Motif LN249_20505 PF01447 Thermolysin metallopeptidase, catalytic domain LN249_20505 PF03413 Peptidase propeptide and YPEB domain LN249_20505 PF02868 Thermolysin metallopeptidase, alpha-helical domain LN249_20525 PF00892 EamA-like transporter family LN249_20535 PF07963 Prokaryotic N-terminal methylation motif LN249_20535 PF08334 Type II secretion system (T2SS), protein G LN249_20540 PF01584 CheW-like domain LN249_20540 PF00072 Response regulator receiver domain LN249_20545 PF00196 Bacterial regulatory proteins, luxR family LN249_20545 PF00072 Response regulator receiver domain LN249_20565 PF01389 OmpA-like transmembrane domain LN249_20565 PF00691 OmpA family LN249_20600 PF00437 Type II/IV secretion system protein LN249_20615 PF04972 BON domain LN249_20615 PF00263 Bacterial type II and III secretion system protein LN249_20615 PF13629 Pilus formation protein N terminal region LN249_20635 PF03466 LysR substrate binding domain LN249_20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_20640 PF12833 Helix-turn-helix domain LN249_20650 PF08453 Peptidase family M9 N-terminal LN249_20650 PF04151 Bacterial pre-peptidase C-terminal domain LN249_20650 PF01752 Collagenase LN249_20670 PF01926 50S ribosome-binding GTPase LN249_20675 PF00155 Aminotransferase class I and II LN249_20680 PF00072 Response regulator receiver domain LN249_20680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_20690 PF00583 Acetyltransferase (GNAT) family LN249_20690 PF00814 Glycoprotease family LN249_20700 PF03606 C4-dicarboxylate anaerobic carrier LN249_20705 PF04011 LemA family LN249_20710 PF01435 Peptidase family M48 LN249_20725 PF18081 Fanconi anemia-associated nuclease SAP domain LN249_20725 PF08774 VRR-NUC domain LN249_20735 PF04076 Bacterial OB fold (BOF) protein LN249_20740 PF00781 Diacylglycerol kinase catalytic domain LN249_20745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_20745 PF03466 LysR substrate binding domain LN249_20750 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LN249_20750 PF01872 RibD C-terminal domain LN249_20765 PF00092 von Willebrand factor type A domain LN249_20780 PF17863 AAA lid domain LN249_20780 PF07726 ATPase family associated with various cellular activities (AAA) LN249_20785 PF04055 Radical SAM superfamily LN249_20785 PF13186 Iron-sulfur cluster-binding domain LN249_20790 PF16385 Domain of unknown function LN249_20790 PF00884 Sulfatase LN249_20795 PF03466 LysR substrate binding domain LN249_20795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_20800 PF00884 Sulfatase LN249_20805 PF00072 Response regulator receiver domain LN249_20805 PF00486 Transcriptional regulatory protein, C terminal LN249_20820 PF00672 HAMP domain LN249_20820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_20820 PF00512 His Kinase A (phospho-acceptor) domain LN249_20820 PF01627 Hpt domain LN249_20820 PF00072 Response regulator receiver domain LN249_20825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LN249_20830 PF02142 MGS-like domain LN249_20835 PF13361 UvrD-like helicase C-terminal domain LN249_20835 PF00580 UvrD/REP helicase N-terminal domain LN249_20835 PF12462 DNA helicase IV / RNA helicase N terminal LN249_20840 PF12805 FUSC-like inner membrane protein yccS LN249_20870 PF07715 TonB-dependent Receptor Plug Domain LN249_20870 PF00593 TonB dependent receptor LN249_20875 PF12833 Helix-turn-helix domain LN249_20880 PF13411 MerR HTH family regulatory protein LN249_20885 PF00005 ABC transporter LN249_20890 PF01032 FecCD transport family LN249_20895 PF01032 FecCD transport family LN249_20900 PF01497 Periplasmic binding protein LN249_20910 PF01048 Phosphorylase superfamily LN249_20915 PF04973 Nicotinamide mononucleotide transporter LN249_20920 PF00356 Bacterial regulatory proteins, lacI family LN249_20925 PF00294 pfkB family carbohydrate kinase LN249_20930 PF13407 Periplasmic binding protein domain LN249_20935 PF02653 Branched-chain amino acid transport system / permease component LN249_20940 PF00005 ABC transporter LN249_20945 PF05025 RbsD / FucU transport protein family LN249_20950 PF00990 Diguanylate cyclase, GGDEF domain LN249_20950 PF00563 EAL domain LN249_20985 PF04116 Fatty acid hydroxylase superfamily LN249_20995 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LN249_20995 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LN249_21005 PF00072 Response regulator receiver domain LN249_21005 PF09308 LuxQ, periplasmic LN249_21005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_21005 PF00512 His Kinase A (phospho-acceptor) domain LN249_21015 PF13188 PAS domain LN249_21015 PF03707 Bacterial signalling protein N terminal repeat LN249_21015 PF00990 Diguanylate cyclase, GGDEF domain LN249_21015 PF00563 EAL domain LN249_21025 PF01145 SPFH domain / Band 7 family LN249_21025 PF16200 C-terminal region of band_7 LN249_21035 PF00881 Nitroreductase family LN249_21040 PF00005 ABC transporter LN249_21040 PF00571 CBS domain LN249_21045 PF00528 Binding-protein-dependent transport system inner membrane component LN249_21050 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LN249_21055 PF05199 GMC oxidoreductase LN249_21055 PF00732 GMC oxidoreductase LN249_21060 PF00171 Aldehyde dehydrogenase family LN249_21065 PF13977 BetI-type transcriptional repressor, C-terminal LN249_21065 PF00440 Bacterial regulatory proteins, tetR family LN249_21070 PF00990 Diguanylate cyclase, GGDEF domain LN249_21070 PF00072 Response regulator receiver domain LN249_21080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LN249_21080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LN249_21090 PF00378 Enoyl-CoA hydratase/isomerase LN249_21095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LN249_21095 PF02770 Acyl-CoA dehydrogenase, middle domain LN249_21095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LN249_21100 PF00171 Aldehyde dehydrogenase family LN249_21105 PF02803 Thiolase, C-terminal domain LN249_21105 PF00108 Thiolase, N-terminal domain LN249_21110 PF00376 MerR family regulatory protein LN249_21110 PF09278 MerR, DNA binding LN249_21115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LN249_21115 PF02770 Acyl-CoA dehydrogenase, middle domain LN249_21115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LN249_21120 PF01039 Carboxyl transferase domain LN249_21125 PF00378 Enoyl-CoA hydratase/isomerase LN249_21130 PF02785 Biotin carboxylase C-terminal domain LN249_21130 PF00289 Biotin carboxylase, N-terminal domain LN249_21130 PF00364 Biotin-requiring enzyme LN249_21130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LN249_21130 PF18140 Propionyl-coenzyme A carboxylase BT domain LN249_21135 PF00682 HMGL-like LN249_21140 PF00072 Response regulator receiver domain LN249_21140 PF01627 Hpt domain LN249_21140 PF00672 HAMP domain LN249_21140 PF00512 His Kinase A (phospho-acceptor) domain LN249_21140 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LN249_21140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_21155 PF14602 Hexapeptide repeat of succinyl-transferase LN249_21155 PF12464 Maltose acetyltransferase LN249_21160 PF00392 Bacterial regulatory proteins, gntR family LN249_21160 PF00155 Aminotransferase class I and II LN249_21165 PF01654 Cytochrome bd terminal oxidase subunit I LN249_21170 PF02322 Cytochrome bd terminal oxidase subunit II LN249_21180 PF02567 Phenazine biosynthesis-like protein LN249_21185 PF13419 Haloacid dehalogenase-like hydrolase LN249_21190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_21190 PF03466 LysR substrate binding domain LN249_21195 PF03306 Alpha-acetolactate decarboxylase LN249_21200 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LN249_21200 PF00205 Thiamine pyrophosphate enzyme, central domain LN249_21200 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LN249_21205 PF00106 short chain dehydrogenase LN249_21210 PF02028 BCCT, betaine/carnitine/choline family transporter LN249_21220 PF14535 AMP-binding enzyme C-terminal domain LN249_21220 PF00501 AMP-binding enzyme LN249_21225 PF00005 ABC transporter LN249_21250 PF12399 Branched-chain amino acid ATP-binding cassette transporter LN249_21250 PF00005 ABC transporter LN249_21260 PF01012 Electron transfer flavoprotein domain LN249_21265 PF00766 Electron transfer flavoprotein FAD-binding domain LN249_21265 PF01012 Electron transfer flavoprotein domain LN249_21270 PF13193 AMP-binding enzyme C-terminal domain LN249_21270 PF00501 AMP-binding enzyme LN249_21275 PF03334 Na+/H+ antiporter subunit LN249_21280 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LN249_21285 PF01899 Na+/H+ ion antiporter subunit LN249_21290 PF00361 Proton-conducting membrane transporter LN249_21295 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LN249_21300 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LN249_21300 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LN249_21300 PF13244 Domain of unknown function (DUF4040) LN249_21300 PF00361 Proton-conducting membrane transporter LN249_21310 PF00582 Universal stress protein family LN249_21315 PF00106 short chain dehydrogenase LN249_21320 PF03466 LysR substrate binding domain LN249_21320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_21330 PF07690 Major Facilitator Superfamily LN249_21335 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LN249_21350 PF00182 Chitinase class I LN249_21365 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LN249_21395 PF01037 Lrp/AsnC ligand binding domain LN249_21405 PF05947 Type VI secretion system, TssF LN249_21415 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LN249_21430 PF00069 Protein kinase domain LN249_21455 PF04717 Type VI secretion system, phage-baseplate injector LN249_21460 PF05638 Type VI secretion system effector, Hcp LN249_21465 PF10431 C-terminal, D2-small domain, of ClpB protein LN249_21465 PF00004 ATPase family associated with various cellular activities (AAA) LN249_21465 PF17871 AAA lid domain LN249_21465 PF07724 AAA domain (Cdc48 subfamily) LN249_21470 PF02954 Bacterial regulatory protein, Fis family LN249_21470 PF00072 Response regulator receiver domain LN249_21470 PF00158 Sigma-54 interaction domain LN249_21500 PF01551 Peptidase family M23 LN249_21500 PF08525 Opacity-associated protein A N-terminal motif LN249_21500 PF01476 LysM domain LN249_21505 PF03466 LysR substrate binding domain LN249_21505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_21510 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LN249_21510 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LN249_21510 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LN249_21515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LN249_21520 PF00132 Bacterial transferase hexapeptide (six repeats) LN249_21525 PF00144 Beta-lactamase LN249_21530 PF00392 Bacterial regulatory proteins, gntR family LN249_21545 PF02911 Formyl transferase, C-terminal domain LN249_21545 PF01370 NAD dependent epimerase/dehydratase family LN249_21545 PF00551 Formyl transferase LN249_21570 PF08031 Berberine and berberine like LN249_21570 PF01565 FAD binding domain LN249_21580 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family LN249_21585 PF00478 IMP dehydrogenase / GMP reductase domain LN249_21590 PF03853 YjeF-related protein N-terminus LN249_21590 PF01256 Carbohydrate kinase LN249_21600 PF00072 Response regulator receiver domain LN249_21605 PF00248 Aldo/keto reductase family LN249_21620 PF00654 Voltage gated chloride channel LN249_21630 PF01566 Natural resistance-associated macrophage protein LN249_21635 PF01227 GTP cyclohydrolase I LN249_21640 PF00994 Probable molybdopterin binding domain LN249_21640 PF03454 MoeA C-terminal region (domain IV) LN249_21640 PF03453 MoeA N-terminal region (domain I and II) LN249_21645 PF00899 ThiF family LN249_21665 PF00581 Rhodanese-like domain LN249_21670 PF00563 EAL domain LN249_21670 PF03707 Bacterial signalling protein N terminal repeat LN249_21670 PF00990 Diguanylate cyclase, GGDEF domain LN249_21675 PF00704 Glycosyl hydrolases family 18 LN249_21675 PF08329 Chitinase A, N-terminal domain LN249_21685 PF00923 Transaldolase/Fructose-6-phosphate aldolase LN249_21690 PF02779 Transketolase, pyrimidine binding domain LN249_21690 PF02780 Transketolase, C-terminal domain LN249_21690 PF00456 Transketolase, thiamine diphosphate binding domain LN249_21695 PF08447 PAS fold LN249_21695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_21700 PF07690 Major Facilitator Superfamily LN249_21705 PF00793 DAHP synthetase I family LN249_21710 PF00691 OmpA family LN249_21710 PF01389 OmpA-like transmembrane domain LN249_21715 PF13419 Haloacid dehalogenase-like hydrolase LN249_21720 PF00472 RF-1 domain LN249_21725 PF12729 Four helix bundle sensory module for signal transduction LN249_21725 PF00672 HAMP domain LN249_21725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LN249_21730 PF00873 AcrB/AcrD/AcrF family LN249_21735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_21740 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LN249_21745 PF01546 Peptidase family M20/M25/M40 LN249_21745 PF07687 Peptidase dimerisation domain LN249_21760 PF00196 Bacterial regulatory proteins, luxR family LN249_21760 PF00072 Response regulator receiver domain LN249_21765 PF07730 Histidine kinase LN249_21765 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LN249_21765 PF00672 HAMP domain LN249_21765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_21770 PF12838 4Fe-4S dicluster domain LN249_21770 PF13187 4Fe-4S dicluster domain LN249_21780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LN249_21780 PF00384 Molybdopterin oxidoreductase LN249_21780 PF01568 Molydopterin dinucleotide binding domain LN249_21785 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LN249_21790 PF03264 NapC/NirT cytochrome c family, N-terminal region LN249_21800 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LN249_21810 PF02803 Thiolase, C-terminal domain LN249_21810 PF00108 Thiolase, N-terminal domain LN249_21815 PF00106 short chain dehydrogenase LN249_21820 PF01810 LysE type translocator LN249_21830 PF02355 Protein export membrane protein LN249_21830 PF07549 SecD/SecF GG Motif LN249_21835 PF13721 SecD export protein N-terminal TM region LN249_21835 PF02355 Protein export membrane protein LN249_21835 PF07549 SecD/SecF GG Motif LN249_21860 PF01037 Lrp/AsnC ligand binding domain LN249_21880 PF00529 HlyD membrane-fusion protein of T1SS LN249_21880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LN249_21890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_21890 PF00512 His Kinase A (phospho-acceptor) domain LN249_21890 PF09308 LuxQ, periplasmic LN249_21890 PF00072 Response regulator receiver domain LN249_21895 PF13407 Periplasmic binding protein domain LN249_21900 PF01541 GIY-YIG catalytic domain LN249_21905 PF04337 Protein of unknown function, DUF480 LN249_21915 PF04363 Protein of unknown function (DUF496) LN249_21920 PF01554 MatE LN249_21925 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LN249_21925 PF01627 Hpt domain LN249_21925 PF00072 Response regulator receiver domain LN249_21925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_21925 PF00512 His Kinase A (phospho-acceptor) domain LN249_21925 PF00672 HAMP domain LN249_21930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LN249_21930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LN249_21945 PF03466 LysR substrate binding domain LN249_21945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_21955 PF13520 Amino acid permease LN249_21960 PF00155 Aminotransferase class I and II LN249_21960 PF00392 Bacterial regulatory proteins, gntR family LN249_21970 PF00512 His Kinase A (phospho-acceptor) domain LN249_21970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_21970 PF00672 HAMP domain LN249_21970 PF16527 Two-component sensor protein CpxA, periplasmic domain LN249_21975 PF00072 Response regulator receiver domain LN249_21975 PF00486 Transcriptional regulatory protein, C terminal LN249_22000 PF13533 Biotin-lipoyl like LN249_22005 PF03109 ABC1 family LN249_22010 PF00571 CBS domain LN249_22010 PF03448 MgtE intracellular N domain LN249_22010 PF01769 Divalent cation transporter LN249_22015 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LN249_22020 PF07969 Amidohydrolase family LN249_22025 PF01966 HD domain LN249_22035 PF07690 Major Facilitator Superfamily LN249_22045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LN249_22050 PF00255 Glutathione peroxidase LN249_22060 PF01323 DSBA-like thioredoxin domain LN249_22075 PF00072 Response regulator receiver domain LN249_22075 PF00486 Transcriptional regulatory protein, C terminal LN249_22080 PF16527 Two-component sensor protein CpxA, periplasmic domain LN249_22080 PF00672 HAMP domain LN249_22080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_22080 PF00512 His Kinase A (phospho-acceptor) domain LN249_22090 PF01219 Prokaryotic diacylglycerol kinase LN249_22095 PF00884 Sulfatase LN249_22095 PF08019 Phosphoethanolamine transferase EptA/EptB LN249_22100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LN249_22115 PF01734 Patatin-like phospholipase LN249_22120 PF02678 Pirin LN249_22120 PF05726 Pirin C-terminal cupin domain LN249_22125 PF00313 'Cold-shock' DNA-binding domain LN249_22140 PF00962 Adenosine/AMP deaminase LN249_22145 PF08534 Redoxin LN249_22145 PF00462 Glutaredoxin LN249_22155 PF00768 D-alanyl-D-alanine carboxypeptidase LN249_22155 PF07943 Penicillin-binding protein 5, C-terminal domain LN249_22160 PF02798 Glutathione S-transferase, N-terminal domain LN249_22165 PF08244 Glycosyl hydrolases family 32 C terminal LN249_22165 PF00251 Glycosyl hydrolases family 32 N-terminal domain LN249_22170 PF00294 pfkB family carbohydrate kinase LN249_22175 PF02378 Phosphotransferase system, EIIC LN249_22175 PF00367 phosphotransferase system, EIIB LN249_22180 PF00356 Bacterial regulatory proteins, lacI family LN249_22185 PF11471 Maltoporin periplasmic N-terminal extension LN249_22185 PF02264 LamB porin LN249_22230 PF12833 Helix-turn-helix domain LN249_22230 PF01497 Periplasmic binding protein LN249_22235 PF00155 Aminotransferase class I and II LN249_22260 PF00535 Glycosyl transferase family 2 LN249_22270 PF00271 Helicase conserved C-terminal domain LN249_22270 PF00270 DEAD/DEAH box helicase LN249_22280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_22280 PF03466 LysR substrate binding domain LN249_22285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_22285 PF03466 LysR substrate binding domain LN249_22295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LN249_22300 PF08240 Alcohol dehydrogenase GroES-like domain LN249_22300 PF00107 Zinc-binding dehydrogenase LN249_22315 PF12833 Helix-turn-helix domain LN249_22320 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LN249_22325 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LN249_22330 PF00392 Bacterial regulatory proteins, gntR family LN249_22330 PF00155 Aminotransferase class I and II LN249_22335 PF00557 Metallopeptidase family M24 LN249_22335 PF01321 Creatinase/Prolidase N-terminal domain LN249_22340 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LN249_22345 PF03480 Bacterial extracellular solute-binding protein, family 7 LN249_22350 PF01037 Lrp/AsnC ligand binding domain LN249_22355 PF00171 Aldehyde dehydrogenase family LN249_22360 PF00202 Aminotransferase class-III LN249_22365 PF00291 Pyridoxal-phosphate dependent enzyme LN249_22370 PF02423 Ornithine cyclodeaminase/mu-crystallin family LN249_22380 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LN249_22385 PF01810 LysE type translocator LN249_22395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_22395 PF03466 LysR substrate binding domain LN249_22400 PF00709 Adenylosuccinate synthetase LN249_22405 PF00710 Asparaginase, N-terminal LN249_22405 PF17763 Glutaminase/Asparaginase C-terminal domain LN249_22410 PF03618 Kinase/pyrophosphorylase LN249_22415 PF02896 PEP-utilising enzyme, TIM barrel domain LN249_22415 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LN249_22415 PF00391 PEP-utilising enzyme, mobile domain LN249_22425 PF00072 Response regulator receiver domain LN249_22425 PF00196 Bacterial regulatory proteins, luxR family LN249_22430 PF00579 tRNA synthetases class I (W and Y) LN249_22440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_22440 PF03466 LysR substrate binding domain LN249_22445 PF13533 Biotin-lipoyl like LN249_22450 PF00873 AcrB/AcrD/AcrF family LN249_22465 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 LN249_22465 PF00703 Glycosyl hydrolases family 2 LN249_22465 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LN249_22465 PF02837 Glycosyl hydrolases family 2, sugar binding domain LN249_22470 PF02028 BCCT, betaine/carnitine/choline family transporter LN249_22475 PF00392 Bacterial regulatory proteins, gntR family LN249_22475 PF07702 UTRA domain LN249_22500 PF08402 TOBE domain LN249_22500 PF00005 ABC transporter LN249_22525 PF00873 AcrB/AcrD/AcrF family LN249_22535 PF13091 PLD-like domain LN249_22560 PF00376 MerR family regulatory protein LN249_22560 PF09278 MerR, DNA binding LN249_22570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_22570 PF03466 LysR substrate binding domain LN249_22580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LN249_22580 PF13378 Enolase C-terminal domain-like LN249_22585 PF00009 Elongation factor Tu GTP binding domain LN249_22585 PF14492 Elongation Factor G, domain II LN249_22585 PF00679 Elongation factor G C-terminus LN249_22585 PF03764 Elongation factor G, domain IV LN249_22585 PF03144 Elongation factor Tu domain 2 LN249_22610 PF02001 Protein of unknown function DUF134 LN249_22615 PF00528 Binding-protein-dependent transport system inner membrane component LN249_22620 PF00571 CBS domain LN249_22620 PF00005 ABC transporter LN249_22625 PF17185 NlpE C-terminal OB domain LN249_22625 PF04170 NlpE N-terminal domain LN249_22645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_22645 PF03466 LysR substrate binding domain LN249_22670 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LN249_22670 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LN249_22680 PF00857 Isochorismatase family LN249_22690 PF00455 DeoR C terminal sensor domain LN249_22690 PF08220 DeoR-like helix-turn-helix domain LN249_22695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_22700 PF01641 SelR domain LN249_22700 PF01625 Peptide methionine sulfoxide reductase LN249_22715 PF03060 Nitronate monooxygenase LN249_22720 PF13520 Amino acid permease LN249_22725 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LN249_22730 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LN249_22735 PF12833 Helix-turn-helix domain LN249_22740 PF08359 YsiA-like protein, C-terminal region LN249_22740 PF00440 Bacterial regulatory proteins, tetR family LN249_22770 PF00118 TCP-1/cpn60 chaperonin family LN249_22775 PF00166 Chaperonin 10 Kd subunit LN249_22780 PF00581 Rhodanese-like domain LN249_22795 PF01070 FMN-dependent dehydrogenase LN249_22815 PF00669 Bacterial flagellin N-terminal helical region LN249_22820 PF00460 Flagella basal body rod protein LN249_22820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_22825 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LN249_22825 PF10135 Rod binding protein LN249_22830 PF02119 Flagellar P-ring protein LN249_22835 PF02107 Flagellar L-ring protein LN249_22840 PF00460 Flagella basal body rod protein LN249_22840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_22845 PF00460 Flagella basal body rod protein LN249_22845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_22850 PF00460 Flagella basal body rod protein LN249_22850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_22850 PF07559 Flagellar basal body protein FlaE LN249_22855 PF03963 Flagellar hook capping protein - N-terminal region LN249_22855 PF13861 FlgD Tudor-like domain LN249_22855 PF13860 FlgD Ig-like domain LN249_22860 PF00460 Flagella basal body rod protein LN249_22860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LN249_22865 PF00460 Flagella basal body rod protein LN249_22885 PF01464 Transglycosylase SLT domain LN249_22890 PF08264 Anticodon-binding domain of tRNA LN249_22890 PF00133 tRNA synthetases class I (I, L, M and V) LN249_22910 PF03313 Serine dehydratase alpha chain LN249_22910 PF03315 Serine dehydratase beta chain LN249_22915 PF00854 POT family LN249_22925 PF03466 LysR substrate binding domain LN249_22925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_22935 PF03466 LysR substrate binding domain LN249_22935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_22940 PF00691 OmpA family LN249_22940 PF01389 OmpA-like transmembrane domain LN249_22945 PF18027 Cytosolic carboxypeptidase N-terminal domain LN249_22945 PF00246 Zinc carboxypeptidase LN249_22950 PF01266 FAD dependent oxidoreductase LN249_22960 PF04393 Protein of unknown function (DUF535) LN249_22975 PF07702 UTRA domain LN249_22975 PF00392 Bacterial regulatory proteins, gntR family LN249_22980 PF00528 Binding-protein-dependent transport system inner membrane component LN249_22985 PF00005 ABC transporter LN249_22995 PF00266 Aminotransferase class-V LN249_23000 PF00202 Aminotransferase class-III LN249_23005 PF13419 Haloacid dehalogenase-like hydrolase LN249_23010 PF00356 Bacterial regulatory proteins, lacI family LN249_23015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LN249_23025 PF03611 PTS system sugar-specific permease component LN249_23035 PF05922 Peptidase inhibitor I9 LN249_23035 PF00082 Subtilase family LN249_23040 PF00657 GDSL-like Lipase/Acylhydrolase LN249_23045 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LN249_23050 PF00194 Eukaryotic-type carbonic anhydrase LN249_23055 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LN249_23070 PF13419 Haloacid dehalogenase-like hydrolase LN249_23075 PF03466 LysR substrate binding domain LN249_23075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_23105 PF12464 Maltose acetyltransferase LN249_23105 PF14602 Hexapeptide repeat of succinyl-transferase LN249_23110 PF02566 OsmC-like protein LN249_23115 PF01625 Peptide methionine sulfoxide reductase LN249_23115 PF01641 SelR domain LN249_23130 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LN249_23135 PF03441 FAD binding domain of DNA photolyase LN249_23135 PF00875 DNA photolyase LN249_23140 PF00990 Diguanylate cyclase, GGDEF domain LN249_23155 PF00990 Diguanylate cyclase, GGDEF domain LN249_23155 PF05230 MASE2 domain LN249_23170 PF01773 Na+ dependent nucleoside transporter N-terminus LN249_23170 PF07662 Na+ dependent nucleoside transporter C-terminus LN249_23170 PF07670 Nucleoside recognition LN249_23185 PF01212 Beta-eliminating lyase LN249_23190 PF03116 NQR2, RnfD, RnfE family LN249_23195 PF01654 Cytochrome bd terminal oxidase subunit I LN249_23200 PF02322 Cytochrome bd terminal oxidase subunit II LN249_23210 PF01266 FAD dependent oxidoreductase LN249_23225 PF05525 Branched-chain amino acid transport protein LN249_23230 PF00990 Diguanylate cyclase, GGDEF domain LN249_23235 PF00158 Sigma-54 interaction domain LN249_23235 PF00072 Response regulator receiver domain LN249_23235 PF02954 Bacterial regulatory protein, Fis family LN249_23240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_23240 PF00512 His Kinase A (phospho-acceptor) domain LN249_23250 PF00232 Glycosyl hydrolase family 1 LN249_23275 PF03466 LysR substrate binding domain LN249_23275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_23280 PF18030 RimK PreATP-grasp domain LN249_23280 PF08443 RimK-like ATP-grasp domain LN249_23285 PF08443 RimK-like ATP-grasp domain LN249_23285 PF18030 RimK PreATP-grasp domain LN249_23290 PF00753 Metallo-beta-lactamase superfamily LN249_23295 PF17810 Arginine decarboxylase helical bundle domain LN249_23295 PF17944 Arginine decarboxylase C-terminal helical extension LN249_23295 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LN249_23300 PF00491 Arginase family LN249_23305 PF07690 Major Facilitator Superfamily LN249_23310 PF00326 Prolyl oligopeptidase family LN249_23310 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LN249_23325 PF00950 ABC 3 transport family LN249_23330 PF00005 ABC transporter LN249_23335 PF01297 Zinc-uptake complex component A periplasmic LN249_23375 PF02472 Biopolymer transport protein ExbD/TolR LN249_23380 PF01618 MotA/TolQ/ExbB proton channel family LN249_23385 PF01618 MotA/TolQ/ExbB proton channel family LN249_23395 PF00593 TonB dependent receptor LN249_23395 PF07715 TonB-dependent Receptor Plug Domain LN249_23400 PF00672 HAMP domain LN249_23400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LN249_23400 PF00512 His Kinase A (phospho-acceptor) domain LN249_23400 PF16750 Sensor domain of 2-component histidine kinase LN249_23405 PF00072 Response regulator receiver domain LN249_23405 PF00486 Transcriptional regulatory protein, C terminal LN249_23410 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LN249_23410 PF00056 lactate/malate dehydrogenase, NAD binding domain LN249_23415 PF03009 Glycerophosphoryl diester phosphodiesterase family LN249_23425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LN249_23425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LN249_23430 PF10928 Protein of unknown function (DUF2810) LN249_23485 PF04013 Putative SAM-dependent RNA methyltransferase LN249_23490 PF01523 Putative modulator of DNA gyrase LN249_23495 PF01523 Putative modulator of DNA gyrase LN249_23500 PF08543 Phosphomethylpyrimidine kinase LN249_23505 PF00005 ABC transporter LN249_23510 PF00528 Binding-protein-dependent transport system inner membrane component LN249_23515 PF09084 NMT1/THI5 like LN249_23520 PF03070 TENA/THI-4/PQQC family LN249_23525 PF02110 Hydroxyethylthiazole kinase family LN249_23530 PF02581 Thiamine monophosphate synthase LN249_23540 PF01568 Molydopterin dinucleotide binding domain LN249_23540 PF18364 Molybdopterin oxidoreductase N-terminal domain LN249_23540 PF00384 Molybdopterin oxidoreductase LN249_23545 PF03264 NapC/NirT cytochrome c family, N-terminal region LN249_23550 PF13302 Acetyltransferase (GNAT) domain LN249_23570 PF00583 Acetyltransferase (GNAT) family LN249_23590 PF00155 Aminotransferase class I and II LN249_23590 PF00392 Bacterial regulatory proteins, gntR family LN249_23595 PF02595 Glycerate kinase family LN249_23600 PF02447 GntP family permease LN249_23605 PF05651 Putative sugar diacid recognition LN249_23605 PF13556 PucR C-terminal helix-turn-helix domain LN249_23605 PF17853 GGDEF-like domain LN249_23645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_23645 PF03466 LysR substrate binding domain LN249_23655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_23655 PF03466 LysR substrate binding domain LN249_23660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LN249_23665 PF01661 Macro domain LN249_23670 PF01204 Trehalase LN249_23680 PF12706 Beta-lactamase superfamily domain LN249_23690 PF07690 Major Facilitator Superfamily LN249_23695 PF13533 Biotin-lipoyl like LN249_23700 PF03922 OmpW family LN249_23705 PF13599 Pentapeptide repeats (9 copies) LN249_23720 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LN249_23720 PF18416 N-acetylglucosamine binding protein domain 2 LN249_23725 PF01037 Lrp/AsnC ligand binding domain LN249_23730 PF01810 LysE type translocator LN249_23735 PF00326 Prolyl oligopeptidase family LN249_23740 PF08021 Siderophore-interacting FAD-binding domain LN249_23740 PF04954 Siderophore-interacting protein LN249_23745 PF14583 Oligogalacturonate lyase LN249_23750 PF00474 Sodium:solute symporter family LN249_23755 PF13229 Right handed beta helix region LN249_23770 PF01081 KDPG and KHG aldolase LN249_23775 PF00294 pfkB family carbohydrate kinase LN249_23790 PF07883 Cupin domain LN249_23795 PF10688 Bacterial inner membrane protein LN249_23805 PF01614 Bacterial transcriptional regulator LN249_23805 PF09339 IclR helix-turn-helix domain LN249_23820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_23820 PF03466 LysR substrate binding domain LN249_23825 PF00797 N-acetyltransferase LN249_23830 PF08240 Alcohol dehydrogenase GroES-like domain LN249_23830 PF00107 Zinc-binding dehydrogenase LN249_23835 PF00756 Putative esterase LN249_23845 PF17152 Periplasmic sensor domain LN249_23845 PF00990 Diguanylate cyclase, GGDEF domain LN249_23860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LN249_23860 PF03466 LysR substrate binding domain LN249_23875 PF00849 RNA pseudouridylate synthase LN249_23880 PF01554 MatE LN249_23885 PF03707 Bacterial signalling protein N terminal repeat LN249_23885 PF00990 Diguanylate cyclase, GGDEF domain LN249_23885 PF00563 EAL domain LN249_23895 PF06865 Pyrimidine/purine nucleoside phosphorylase LN249_24025 PF05818 Enterobacterial TraT complement resistance protein LN249_24030 PF00589 Phage integrase family LN249_24205 PF04231 Endonuclease I LN249_24245 PF13614 AAA domain LN249_24330 PF00226 DnaJ domain LN249_24330 PF01556 DnaJ C terminal domain LN249_24330 PF00684 DnaJ central domain LN249_24355 PF12615 F sex factor protein N terminal LN249_24355 PF10412 Type IV secretion-system coupling protein DNA-binding domain LN249_24360 PF18272 single-stranded DNA binding TraI N-terminal subdomain LN249_24360 PF07057 DNA helicase TraI LN249_24360 PF18340 DNA relaxase TraI 2B/2B-like domain LN249_24360 PF08751 TrwC relaxase LN249_24405 PF06834 TraU protein