locus-tag class description N646_0001 PF00425 chorismate binding enzyme N646_0002 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N646_0002 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N646_0002 PF16582 Middle domain of thiamine pyrophosphate N646_0004 PF12697 Alpha/beta hydrolase family N646_0005 PF00378 Enoyl-CoA hydratase/isomerase N646_0006 PF13378 Enolase C-terminal domain-like N646_0007 PF00501 AMP-binding enzyme N646_0007 PF13193 AMP-binding enzyme C-terminal domain N646_0009 PF03601 Conserved hypothetical protein 698 N646_0010 PF07690 Major Facilitator Superfamily N646_0014 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_0014 PF00529 HlyD membrane-fusion protein of T1SS N646_0015 PF00873 AcrB/AcrD/AcrF family N646_0018 PF00291 Pyridoxal-phosphate dependent enzyme N646_0019 PF01037 Lrp/AsnC ligand binding domain N646_0019 PF13404 AsnC-type helix-turn-helix domain N646_0022 PF09619 Type III secretion system lipoprotein chaperone (YscW) N646_0023 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N646_0025 PF00990 Diguanylate cyclase, GGDEF domain N646_0025 PF08448 PAS fold N646_0026 PF08032 RNA 2'-O ribose methyltransferase substrate binding N646_0026 PF00588 SpoU rRNA Methylase family N646_0027 PF00478 IMP dehydrogenase / GMP reductase domain N646_0027 PF00571 CBS domain N646_0028 PF00403 Heavy-metal-associated domain N646_0029 PF01048 Phosphorylase superfamily N646_0031 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_0031 PF00672 HAMP domain N646_0032 PF01230 HIT domain N646_0035 PF13036 Peptidoglycan-synthase activator LpoB N646_0035 PF08139 Prokaryotic membrane lipoprotein lipid attachment site N646_0037 PF05728 Uncharacterised protein family (UPF0227) N646_0038 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_0041 PF17757 UvrB interaction domain N646_0041 PF03461 TRCF domain N646_0041 PF00271 Helicase conserved C-terminal domain N646_0041 PF00270 DEAD/DEAH box helicase N646_0041 PF02559 CarD-like/TRCF domain N646_0043 PF02687 FtsX-like permease family N646_0043 PF12704 MacB-like periplasmic core domain N646_0044 PF00005 ABC transporter N646_0045 PF02687 FtsX-like permease family N646_0045 PF12704 MacB-like periplasmic core domain N646_0047 PF00753 Metallo-beta-lactamase superfamily N646_0047 PF03772 Competence protein N646_0047 PF13567 Domain of unknown function (DUF4131) N646_0048 PF00005 ABC transporter N646_0048 PF00664 ABC transporter transmembrane region N646_0049 PF02606 Tetraacyldisaccharide-1-P 4'-kinase N646_0050 PF03966 Trm112p-like protein N646_0051 PF02348 Cytidylyltransferase N646_0052 PF04293 SpoVR like protein N646_0053 PF04285 Protein of unknown function (DUF444) N646_0054 PF08298 PrkA AAA domain N646_0054 PF06798 PrkA serine protein kinase C-terminal domain N646_0055 PF03887 YfbU domain N646_0057 PF04055 Radical SAM superfamily N646_0059 PF02901 Pyruvate formate lyase-like N646_0059 PF01228 Glycine radical N646_0062 PF00005 ABC transporter N646_0063 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_0065 PF00528 Binding-protein-dependent transport system inner membrane component N646_0066 PF00528 Binding-protein-dependent transport system inner membrane component N646_0068 PF03372 Endonuclease/Exonuclease/phosphatase family N646_0069 PF10689 Protein of unknown function (DUF2496) N646_0070 PF07445 Primosomal replication protein priC N646_0071 PF01925 Sulfite exporter TauE/SafE N646_0072 PF13307 Helicase C-terminal domain N646_0072 PF06733 DEAD_2 N646_0074 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) N646_0075 PF00849 RNA pseudouridylate synthase N646_0076 PF03971 Monomeric isocitrate dehydrogenase N646_0077 PF00313 'Cold-shock' DNA-binding domain N646_0078 PF02617 ATP-dependent Clp protease adaptor protein ClpS N646_0079 PF10431 C-terminal, D2-small domain, of ClpB protein N646_0079 PF02861 Clp amino terminal domain, pathogenicity island component N646_0079 PF17871 AAA lid domain N646_0079 PF07724 AAA domain (Cdc48 subfamily) N646_0079 PF00004 ATPase family associated with various cellular activities (AAA) N646_0080 PF01176 Translation initiation factor 1A / IF-1 N646_0081 PF04376 Arginine-tRNA-protein transferase, N terminus N646_0081 PF04377 Arginine-tRNA-protein transferase, C terminus N646_0082 PF03588 Leucyl/phenylalanyl-tRNA protein transferase N646_0084 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N646_0085 PF10692 Protein of unknown function (DUF2498) N646_0087 PF01131 DNA topoisomerase N646_0087 PF01396 Topoisomerase DNA binding C4 zinc finger N646_0087 PF01751 Toprim domain N646_0087 PF08272 Topoisomerase I zinc-ribbon-like N646_0088 PF00483 Nucleotidyl transferase N646_0089 PF00534 Glycosyl transferases group 1 N646_0089 PF08323 Starch synthase catalytic domain N646_0093 PF04993 TfoX N-terminal domain N646_0093 PF04994 TfoX C-terminal domain N646_0094 PF00356 Bacterial regulatory proteins, lacI family N646_0095 PF02613 Nitrate reductase delta subunit N646_0096 PF00486 Transcriptional regulatory protein, C terminal N646_0096 PF00072 Response regulator receiver domain N646_0097 PF02698 DUF218 domain N646_0099 PF17192 MukF middle domain N646_0099 PF17193 MukF C-terminal domain N646_0099 PF03882 MukF winged-helix domain N646_0100 PF04288 MukE-like family N646_0101 PF04310 MukB N-terminal N646_0101 PF16330 MukB hinge domain N646_0105 PF08443 RimK-like ATP-grasp domain N646_0105 PF18030 RimK PreATP-grasp domain N646_0106 PF08003 Protein of unknown function (DUF1698) N646_0107 PF13649 Methyltransferase domain N646_0108 PF01904 Protein of unknown function DUF72 N646_0109 PF02938 GAD domain N646_0109 PF00152 tRNA synthetases class II (D, K and N) N646_0109 PF01336 OB-fold nucleic acid binding domain N646_0110 PF01709 Transcriptional regulator N646_0111 PF02075 Crossover junction endodeoxyribonuclease RuvC N646_0112 PF07499 RuvA, C-terminal domain N646_0112 PF01330 RuvA N terminal domain N646_0113 PF17864 RuvB AAA lid domain N646_0113 PF05496 Holliday junction DNA helicase RuvB P-loop domain N646_0113 PF05491 RuvB C-terminal winged helix domain N646_0114 PF01654 Cytochrome bd terminal oxidase subunit I N646_0115 PF02322 Cytochrome bd terminal oxidase subunit II N646_0117 PF03061 Thioesterase superfamily N646_0118 PF01618 MotA/TolQ/ExbB proton channel family N646_0119 PF02472 Biopolymer transport protein ExbD/TolR N646_0121 PF04052 TolB amino-terminal domain N646_0121 PF07676 WD40-like Beta Propeller Repeat N646_0122 PF00691 OmpA family N646_0123 PF16331 TolA binding protein trimerisation N646_0123 PF13174 Tetratricopeptide repeat N646_0124 PF02445 Quinolinate synthetase A protein N646_0126 PF03994 Domain of Unknown Function (DUF350) N646_0128 PF03738 Glutathionylspermidine synthase preATP-grasp N646_0130 PF09308 LuxQ, periplasmic N646_0130 PF00072 Response regulator receiver domain N646_0130 PF00512 His Kinase A (phospho-acceptor) domain N646_0130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0131 PF06610 L-alanine exporter N646_0136 PF02322 Cytochrome bd terminal oxidase subunit II N646_0137 PF01654 Cytochrome bd terminal oxidase subunit I N646_0139 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_0139 PF17200 Single Cache domain 2 N646_0139 PF00672 HAMP domain N646_0140 PF00529 HlyD membrane-fusion protein of T1SS N646_0140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_0141 PF00873 AcrB/AcrD/AcrF family N646_0145 PF00579 tRNA synthetases class I (W and Y) N646_0147 PF03372 Endonuclease/Exonuclease/phosphatase family N646_0150 PF00672 HAMP domain N646_0150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_0151 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) N646_0154 PF03466 LysR substrate binding domain N646_0154 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0156 PF01262 Alanine dehydrogenase/PNT, C-terminal domain N646_0156 PF05222 Alanine dehydrogenase/PNT, N-terminal domain N646_0157 PF01037 Lrp/AsnC ligand binding domain N646_0158 PF13491 4TM region of DNA translocase FtsK/SpoIIIE N646_0158 PF09397 Ftsk gamma domain N646_0158 PF17854 FtsK alpha domain N646_0158 PF01580 FtsK/SpoIIIE family N646_0159 PF03548 Outer membrane lipoprotein carrier protein LolA N646_0160 PF16193 AAA C-terminal domain N646_0160 PF12002 MgsA AAA+ ATPase C terminal N646_0160 PF00004 ATPase family associated with various cellular activities (AAA) N646_0161 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N646_0161 PF02403 Seryl-tRNA synthetase N-terminal domain N646_0162 PF01258 Prokaryotic dksA/traR C4-type zinc finger N646_0164 PF04055 Radical SAM superfamily N646_0164 PF06968 Biotin and Thiamin Synthesis associated domain N646_0165 PF00155 Aminotransferase class I and II N646_0166 PF08241 Methyltransferase domain N646_0169 PF01435 Peptidase family M48 N646_0171 PF00106 short chain dehydrogenase N646_0176 PF16036 Chalcone isomerase-like N646_0178 PF08328 Adenylosuccinate lyase C-terminal N646_0178 PF00206 Lyase N646_0179 PF04356 Protein of unknown function (DUF489) N646_0182 PF00294 pfkB family carbohydrate kinase N646_0183 PF00816 H-NS histone family N646_0184 PF03553 Na+/H+ antiporter family N646_0185 PF00158 Sigma-54 interaction domain N646_0185 PF00072 Response regulator receiver domain N646_0185 PF02954 Bacterial regulatory protein, Fis family N646_0186 PF01634 ATP phosphoribosyltransferase N646_0186 PF08029 HisG, C-terminal domain N646_0187 PF00815 Histidinol dehydrogenase N646_0188 PF00155 Aminotransferase class I and II N646_0189 PF00475 Imidazoleglycerol-phosphate dehydratase N646_0189 PF08645 Polynucleotide kinase 3 phosphatase N646_0190 PF00117 Glutamine amidotransferase class-I N646_0191 PF00977 Histidine biosynthesis protein N646_0192 PF00977 Histidine biosynthesis protein N646_0193 PF01502 Phosphoribosyl-AMP cyclohydrolase N646_0193 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase N646_0194 PF02810 SEC-C motif N646_0195 PF00563 EAL domain N646_0195 PF08668 HDOD domain N646_0196 PF00149 Calcineurin-like phosphoesterase N646_0197 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N646_0198 PF01406 tRNA synthetases class I (C) catalytic domain N646_0198 PF09190 DALR domain N646_0199 PF00265 Thymidine kinase N646_0205 PF01226 Formate/nitrite transporter N646_0207 PF03649 Uncharacterised protein family (UPF0014) N646_0208 PF06796 Periplasmic nitrate reductase protein NapE N646_0209 PF03264 NapC/NirT cytochrome c family, N-terminal region N646_0210 PF18364 Molybdopterin oxidoreductase N-terminal domain N646_0210 PF00384 Molybdopterin oxidoreductase N646_0210 PF01568 Molydopterin dinucleotide binding domain N646_0211 PF16874 Glycosyl hydrolase family 36 C-terminal domain N646_0211 PF16875 Glycosyl hydrolase family 36 N-terminal domain N646_0213 PF02833 DHHA2 domain N646_0213 PF01368 DHH family N646_0215 PF00005 ABC transporter N646_0216 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_0216 PF00005 ABC transporter N646_0217 PF00528 Binding-protein-dependent transport system inner membrane component N646_0217 PF12911 N-terminal TM domain of oligopeptide transport permease C N646_0218 PF00528 Binding-protein-dependent transport system inner membrane component N646_0219 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_0220 PF00158 Sigma-54 interaction domain N646_0220 PF02954 Bacterial regulatory protein, Fis family N646_0221 PF04012 PspA/IM30 family N646_0222 PF06667 Phage shock protein B N646_0223 PF04024 PspC domain N646_0225 PF13533 Biotin-lipoyl like N646_0226 PF00873 AcrB/AcrD/AcrF family N646_0227 PF03352 Methyladenine glycosylase N646_0228 PF03280 Proteobacterial lipase chaperone protein N646_0229 PF00561 alpha/beta hydrolase fold N646_0230 PF01053 Cys/Met metabolism PLP-dependent enzyme N646_0231 PF13396 Phospholipase_D-nuclease N-terminal N646_0231 PF13091 PLD-like domain N646_0232 PF00209 Sodium:neurotransmitter symporter family N646_0233 PF00849 RNA pseudouridylate synthase N646_0234 PF01170 Putative RNA methylase family UPF0020 N646_0234 PF10672 S-adenosylmethionine-dependent methyltransferase N646_0234 PF02926 THUMP domain N646_0235 PF00175 Oxidoreductase NAD-binding domain N646_0235 PF00111 2Fe-2S iron-sulfur cluster binding domain N646_0235 PF00970 Oxidoreductase FAD-binding domain N646_0236 PF03063 Prismane/CO dehydrogenase family N646_0237 PF01590 GAF domain N646_0237 PF00158 Sigma-54 interaction domain N646_0239 PF01066 CDP-alcohol phosphatidyltransferase N646_0240 PF00005 ABC transporter N646_0241 PF00528 Binding-protein-dependent transport system inner membrane component N646_0242 PF13416 Bacterial extracellular solute-binding protein N646_0246 PF02872 5'-nucleotidase, C-terminal domain N646_0246 PF00149 Calcineurin-like phosphoesterase N646_0249 PF01386 Ribosomal L25p family N646_0250 PF00672 HAMP domain N646_0250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0250 PF00512 His Kinase A (phospho-acceptor) domain N646_0251 PF00072 Response regulator receiver domain N646_0251 PF00486 Transcriptional regulatory protein, C terminal N646_0253 PF00271 Helicase conserved C-terminal domain N646_0253 PF04851 Type III restriction enzyme, res subunit N646_0254 PF00849 RNA pseudouridylate synthase N646_0254 PF01479 S4 domain N646_0256 PF07690 Major Facilitator Superfamily N646_0258 PF11066 Protein of unknown function (DUF2867) N646_0258 PF13460 NAD(P)H-binding N646_0259 PF01554 MatE N646_0260 PF00005 ABC transporter N646_0263 PF06965 Na+/H+ antiporter 1 N646_0265 PF16295 Tetracyclin repressor-like, C-terminal domain N646_0265 PF00440 Bacterial regulatory proteins, tetR family N646_0266 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N646_0266 PF09317 Domain of unknown function (DUF1974) N646_0266 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N646_0266 PF02770 Acyl-CoA dehydrogenase, middle domain N646_0267 PF07055 Enoyl reductase FAD binding domain N646_0267 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase N646_0267 PF12241 Trans-2-enoyl-CoA reductase catalytic region N646_0268 PF02080 TrkA-C domain N646_0268 PF06826 Predicted Permease Membrane Region N646_0269 PF00462 Glutaredoxin N646_0270 PF00465 Iron-containing alcohol dehydrogenase N646_0271 PF01418 Helix-turn-helix domain, rpiR family N646_0271 PF01380 SIS domain N646_0272 PF00282 Pyridoxal-dependent decarboxylase conserved domain N646_0275 PF03956 Lysine exporter LysO N646_0278 PF04993 TfoX N-terminal domain N646_0278 PF04994 TfoX C-terminal domain N646_0282 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_0282 PF00512 His Kinase A (phospho-acceptor) domain N646_0282 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0284 PF00266 Aminotransferase class-V N646_0285 PF00291 Pyridoxal-phosphate dependent enzyme N646_0286 PF00664 ABC transporter transmembrane region N646_0286 PF00005 ABC transporter N646_0287 PF00664 ABC transporter transmembrane region N646_0287 PF00005 ABC transporter N646_0288 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_0290 PF00266 Aminotransferase class-V N646_0292 PF00990 Diguanylate cyclase, GGDEF domain N646_0292 PF00072 Response regulator receiver domain N646_0294 PF00939 Sodium:sulfate symporter transmembrane region N646_0295 PF02698 DUF218 domain N646_0296 PF03949 Malic enzyme, NAD binding domain N646_0296 PF00390 Malic enzyme, N-terminal domain N646_0297 PF00271 Helicase conserved C-terminal domain N646_0297 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold N646_0297 PF04408 Helicase associated domain (HA2) N646_0297 PF11898 Domain of unknown function (DUF3418) N646_0297 PF00270 DEAD/DEAH box helicase N646_0299 PF16655 PhoD-like phosphatase, N-terminal domain N646_0299 PF09423 PhoD-like phosphatase N646_0300 PF01259 SAICAR synthetase N646_0304 PF00691 OmpA family N646_0304 PF05736 OprF membrane domain N646_0307 PF02913 FAD linked oxidases, C-terminal domain N646_0307 PF01565 FAD binding domain N646_0307 PF13183 4Fe-4S dicluster domain N646_0308 PF04191 Phospholipid methyltransferase N646_0310 PF00221 Aromatic amino acid lyase N646_0311 PF01175 Urocanase Rossmann-like domain N646_0311 PF17391 Urocanase N-terminal domain N646_0311 PF17392 Urocanase C-terminal domain N646_0312 PF00491 Arginase family N646_0313 PF01979 Amidohydrolase family N646_0314 PF07702 UTRA domain N646_0314 PF00392 Bacterial regulatory proteins, gntR family N646_0317 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N646_0317 PF03129 Anticodon binding domain N646_0317 PF02824 TGS domain N646_0317 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N646_0318 PF00707 Translation initiation factor IF-3, C-terminal domain N646_0318 PF05198 Translation initiation factor IF-3, N-terminal domain N646_0319 PF01632 Ribosomal protein L35 N646_0320 PF00453 Ribosomal protein L20 N646_0321 PF01906 Putative heavy-metal-binding N646_0328 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain N646_0328 PF01409 tRNA synthetases class II core domain (F) N646_0329 PF03483 B3/4 domain N646_0329 PF03484 tRNA synthetase B5 domain N646_0329 PF03147 Ferredoxin-fold anticodon binding domain N646_0329 PF01588 Putative tRNA binding domain N646_0329 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain N646_0331 PF00216 Bacterial DNA-binding protein N646_0333 PF05724 Thiopurine S-methyltransferase (TPMT) N646_0334 PF02222 ATP-grasp domain N646_0335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N646_0335 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region N646_0336 PF04172 LrgB-like family N646_0337 PF03788 LrgA family N646_0338 PF08411 Exonuclease C-terminal N646_0338 PF00929 Exonuclease N646_0341 PF13460 NAD(P)H-binding N646_0342 PF02277 Phosphoribosyltransferase N646_0343 PF02277 Phosphoribosyltransferase N646_0344 PF02654 Cobalamin-5-phosphate synthase N646_0345 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase N646_0348 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family N646_0349 PF01032 FecCD transport family N646_0350 PF00005 ABC transporter N646_0354 PF03466 LysR substrate binding domain N646_0354 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0356 PF01863 Protein of unknown function DUF45 N646_0357 PF05971 RNA methyltransferase N646_0361 PF00392 Bacterial regulatory proteins, gntR family N646_0363 PF00171 Aldehyde dehydrogenase family N646_0364 PF05544 Proline racemase N646_0368 PF02423 Ornithine cyclodeaminase/mu-crystallin family N646_0369 PF00701 Dihydrodipicolinate synthetase family N646_0370 PF08402 TOBE domain N646_0370 PF00005 ABC transporter N646_0371 PF00528 Binding-protein-dependent transport system inner membrane component N646_0372 PF00528 Binding-protein-dependent transport system inner membrane component N646_0375 PF08453 Peptidase family M9 N-terminal N646_0375 PF01752 Collagenase N646_0377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_0377 PF00005 ABC transporter N646_0378 PF00005 ABC transporter N646_0378 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_0379 PF12911 N-terminal TM domain of oligopeptide transport permease C N646_0379 PF00528 Binding-protein-dependent transport system inner membrane component N646_0380 PF00528 Binding-protein-dependent transport system inner membrane component N646_0381 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_0382 PF07687 Peptidase dimerisation domain N646_0382 PF01546 Peptidase family M20/M25/M40 N646_0383 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N646_0384 PF04209 homogentisate 1,2-dioxygenase N646_0386 PF14497 Glutathione S-transferase, C-terminal domain N646_0386 PF02798 Glutathione S-transferase, N-terminal domain N646_0394 PF07007 Lysozyme inhibitor LprI N646_0401 PF03553 Na+/H+ antiporter family N646_0402 PF00120 Glutamine synthetase, catalytic domain N646_0403 PF07722 Peptidase C26 N646_0404 PF07883 Cupin domain N646_0404 PF01381 Helix-turn-helix N646_0405 PF00171 Aldehyde dehydrogenase family N646_0406 PF01266 FAD dependent oxidoreductase N646_0407 PF00795 Carbon-nitrogen hydrolase N646_0408 PF04371 Porphyromonas-type peptidyl-arginine deiminase N646_0409 PF00171 Aldehyde dehydrogenase family N646_0410 PF00202 Aminotransferase class-III N646_0411 PF00563 EAL domain N646_0411 PF12792 CSS motif domain associated with EAL N646_0413 PF01047 MarR family N646_0414 PF04237 YjbR N646_0419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0419 PF00512 His Kinase A (phospho-acceptor) domain N646_0419 PF01627 Hpt domain N646_0419 PF00072 Response regulator receiver domain N646_0419 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N646_0419 PF00672 HAMP domain N646_0420 PF03707 Bacterial signalling protein N terminal repeat N646_0420 PF00563 EAL domain N646_0420 PF00990 Diguanylate cyclase, GGDEF domain N646_0423 PF04204 Homoserine O-succinyltransferase N646_0425 PF00893 Small Multidrug Resistance protein N646_0426 PF03279 Bacterial lipid A biosynthesis acyltransferase N646_0427 PF02074 Carboxypeptidase Taq (M32) metallopeptidase N646_0428 PF01810 LysE type translocator N646_0430 PF01235 Sodium:alanine symporter family N646_0435 PF00884 Sulfatase N646_0436 PF04069 Substrate binding domain of ABC-type glycine betaine transport system N646_0437 PF00528 Binding-protein-dependent transport system inner membrane component N646_0438 PF00571 CBS domain N646_0438 PF00005 ABC transporter N646_0441 PF02028 BCCT, betaine/carnitine/choline family transporter N646_0442 PF00583 Acetyltransferase (GNAT) family N646_0443 PF00202 Aminotransferase class-III N646_0444 PF06339 Ectoine synthase N646_0445 PF13840 ACT domain N646_0445 PF00696 Amino acid kinase family N646_0446 PF01797 Transposase IS200 like N646_0447 PF00884 Sulfatase N646_0449 PF03781 Sulfatase-modifying factor enzyme 1 N646_0450 PF13186 Iron-sulfur cluster-binding domain N646_0450 PF04055 Radical SAM superfamily N646_0453 PF00884 Sulfatase N646_0455 PF00884 Sulfatase N646_0459 PF00664 ABC transporter transmembrane region N646_0459 PF03412 Peptidase C39 family N646_0459 PF00005 ABC transporter N646_0461 PF02321 Outer membrane efflux protein N646_0464 PF00455 DeoR C terminal sensor domain N646_0464 PF08220 DeoR-like helix-turn-helix domain N646_0465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N646_0465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N646_0466 PF03928 Haem-degrading N646_0467 PF00990 Diguanylate cyclase, GGDEF domain N646_0467 PF00072 Response regulator receiver domain N646_0470 PF00939 Sodium:sulfate symporter transmembrane region N646_0471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0471 PF00512 His Kinase A (phospho-acceptor) domain N646_0472 PF00158 Sigma-54 interaction domain N646_0472 PF00072 Response regulator receiver domain N646_0472 PF02954 Bacterial regulatory protein, Fis family N646_0473 PF00563 EAL domain N646_0473 PF00990 Diguanylate cyclase, GGDEF domain N646_0473 PF03707 Bacterial signalling protein N terminal repeat N646_0474 PF01966 HD domain N646_0474 PF11871 Domain of unknown function (DUF3391) N646_0475 PF01810 LysE type translocator N646_0476 PF11230 Protein of unknown function (DUF3029) N646_0477 PF04055 Radical SAM superfamily N646_0479 PF03741 Integral membrane protein TerC family N646_0481 PF01966 HD domain N646_0482 PF00465 Iron-containing alcohol dehydrogenase N646_0483 PF03222 Tryptophan/tyrosine permease family N646_0484 PF01966 HD domain N646_0484 PF11871 Domain of unknown function (DUF3391) N646_0486 PF00005 ABC transporter N646_0487 PF01497 Periplasmic binding protein N646_0488 PF01032 FecCD transport family N646_0489 PF00593 TonB dependent receptor N646_0489 PF07715 TonB-dependent Receptor Plug Domain N646_0491 PF00005 ABC transporter N646_0491 PF00664 ABC transporter transmembrane region N646_0492 PF00005 ABC transporter N646_0492 PF00664 ABC transporter transmembrane region N646_0493 PF07963 Prokaryotic N-terminal methylation motif N646_0493 PF08334 Type II secretion system (T2SS), protein G N646_0495 PF03466 LysR substrate binding domain N646_0495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0497 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N646_0497 PF02894 Oxidoreductase family, C-terminal alpha/beta domain N646_0500 PF00012 Hsp70 protein N646_0501 PF00012 Hsp70 protein N646_0504 PF00990 Diguanylate cyclase, GGDEF domain N646_0512 PF02525 Flavodoxin-like fold N646_0513 PF00270 DEAD/DEAH box helicase N646_0513 PF11898 Domain of unknown function (DUF3418) N646_0513 PF04408 Helicase associated domain (HA2) N646_0513 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold N646_0513 PF00271 Helicase conserved C-terminal domain N646_0516 PF02028 BCCT, betaine/carnitine/choline family transporter N646_0518 PF02397 Bacterial sugar transferase N646_0520 PF13439 Glycosyltransferase Family 4 N646_0520 PF00534 Glycosyl transferases group 1 N646_0526 PF00534 Glycosyl transferases group 1 N646_0526 PF13439 Glycosyltransferase Family 4 N646_0527 PF00534 Glycosyl transferases group 1 N646_0527 PF13439 Glycosyltransferase Family 4 N646_0528 PF02954 Bacterial regulatory protein, Fis family N646_0528 PF00072 Response regulator receiver domain N646_0528 PF00158 Sigma-54 interaction domain N646_0531 PF10531 SLBB domain N646_0531 PF02563 Polysaccharide biosynthesis/export protein N646_0533 PF01740 STAS domain N646_0534 PF14743 DNA ligase OB-like domain N646_0534 PF01068 ATP dependent DNA ligase domain N646_0536 PF01554 MatE N646_0537 PF00677 Lumazine binding domain N646_0540 PF01339 CheB methylesterase N646_0540 PF00072 Response regulator receiver domain N646_0541 PF00990 Diguanylate cyclase, GGDEF domain N646_0541 PF05230 MASE2 domain N646_0543 PF00877 NlpC/P60 family N646_0551 PF00480 ROK family N646_0553 PF03453 MoeA N-terminal region (domain I and II) N646_0553 PF00994 Probable molybdopterin binding domain N646_0553 PF03454 MoeA C-terminal region (domain IV) N646_0554 PF12804 MobA-like NTP transferase domain N646_0555 PF08402 TOBE domain N646_0555 PF00005 ABC transporter N646_0556 PF00528 Binding-protein-dependent transport system inner membrane component N646_0557 PF12849 PBP superfamily domain N646_0558 PF00158 Sigma-54 interaction domain N646_0558 PF02954 Bacterial regulatory protein, Fis family N646_0558 PF00072 Response regulator receiver domain N646_0559 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0559 PF00512 His Kinase A (phospho-acceptor) domain N646_0559 PF00989 PAS fold N646_0560 PF12848 ABC transporter N646_0560 PF00005 ABC transporter N646_0561 PF02634 FdhD/NarQ family N646_0565 PF02613 Nitrate reductase delta subunit N646_0567 PF01568 Molydopterin dinucleotide binding domain N646_0567 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N646_0567 PF00384 Molybdopterin oxidoreductase N646_0568 PF13247 4Fe-4S dicluster domain N646_0573 PF00909 Ammonium Transporter Family N646_0574 PF02146 Sir2 family N646_0575 PF13416 Bacterial extracellular solute-binding protein N646_0576 PF13416 Bacterial extracellular solute-binding protein N646_0577 PF00528 Binding-protein-dependent transport system inner membrane component N646_0578 PF00528 Binding-protein-dependent transport system inner membrane component N646_0579 PF08402 TOBE domain N646_0579 PF00005 ABC transporter N646_0583 PF01171 PP-loop family N646_0584 PF01797 Transposase IS200 like N646_0585 PF00582 Universal stress protein family N646_0586 PF00027 Cyclic nucleotide-binding domain N646_0586 PF13545 Crp-like helix-turn-helix domain N646_0589 PF00403 Heavy-metal-associated domain N646_0591 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP N646_0591 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N646_0594 PF00115 Cytochrome C and Quinol oxidase polypeptide I N646_0597 PF00072 Response regulator receiver domain N646_0597 PF09308 LuxQ, periplasmic N646_0597 PF00512 His Kinase A (phospho-acceptor) domain N646_0597 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0607 PF05707 Zonular occludens toxin (Zot) N646_0616 PF17414 MatP C-terminal ribbon-helix-helix domain N646_0616 PF06303 MatP N-terminal domain N646_0618 PF05362 Lon protease (S16) C-terminal proteolytic domain N646_0618 PF13654 AAA domain N646_0619 PF07977 FabA-like domain N646_0620 PF04957 Ribosome modulation factor N646_0624 PF01170 Putative RNA methylase family UPF0020 N646_0624 PF02926 THUMP domain N646_0624 PF10672 S-adenosylmethionine-dependent methyltransferase N646_0625 PF07126 Cell-division protein ZapC N646_0626 PF07126 Cell-division protein ZapC N646_0627 PF01180 Dihydroorotate dehydrogenase N646_0629 PF05088 Bacterial NAD-glutamate dehydrogenase N646_0630 PF11940 Domain of unknown function (DUF3458) Ig-like fold N646_0630 PF17432 Domain of unknown function (DUF3458_C) ARM repeats N646_0630 PF01433 Peptidase family M1 domain N646_0632 PF17804 Tail specific protease N-terminal domain N646_0632 PF03572 Peptidase family S41 N646_0632 PF00595 PDZ domain N646_0632 PF11818 C-terminal domain of tail specific protease (DUF3340) N646_0633 PF17516 ProQ C-terminal domain N646_0633 PF04352 ProQ/FINO family N646_0634 PF13185 GAF domain N646_0635 PF00664 ABC transporter transmembrane region N646_0635 PF00005 ABC transporter N646_0636 PF04403 Paraquat-inducible protein A N646_0637 PF02470 MlaD protein N646_0638 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF N646_0638 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF N646_0638 PF01189 16S rRNA methyltransferase RsmB/F N646_0642 PF00793 DAHP synthetase I family N646_0643 PF04461 Protein of unknown function (DUF520) N646_0644 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N646_0644 PF14824 Sirohaem biosynthesis protein central N646_0644 PF10414 Sirohaem synthase dimerisation region N646_0645 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_0647 PF00528 Binding-protein-dependent transport system inner membrane component N646_0648 PF00528 Binding-protein-dependent transport system inner membrane component N646_0649 PF00005 ABC transporter N646_0650 PF01027 Inhibitor of apoptosis-promoting Bax1 N646_0652 PF04358 DsrC like protein N646_0653 PF00708 Acylphosphatase N646_0654 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_0654 PF17200 Single Cache domain 2 N646_0654 PF00672 HAMP domain N646_0655 PF17785 PUA-like domain N646_0655 PF10672 S-adenosylmethionine-dependent methyltransferase N646_0667 PF00691 OmpA family N646_0670 PF00691 OmpA family N646_0670 PF05736 OprF membrane domain N646_0672 PF00990 Diguanylate cyclase, GGDEF domain N646_0672 PF13185 GAF domain N646_0674 PF01614 Bacterial transcriptional regulator N646_0674 PF09339 IclR helix-turn-helix domain N646_0676 PF00248 Aldo/keto reductase family N646_0677 PF03466 LysR substrate binding domain N646_0677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0679 PF03466 LysR substrate binding domain N646_0679 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0680 PF07690 Major Facilitator Superfamily N646_0683 PF02311 AraC-like ligand binding domain N646_0683 PF12833 Helix-turn-helix domain N646_0684 PF00857 Isochorismatase family N646_0685 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_0687 PF00107 Zinc-binding dehydrogenase N646_0687 PF08240 Alcohol dehydrogenase GroES-like domain N646_0688 PF02310 B12 binding domain N646_0688 PF02965 Vitamin B12 dependent methionine synthase, activation domain N646_0688 PF02574 Homocysteine S-methyltransferase N646_0688 PF02607 B12 binding domain N646_0688 PF00809 Pterin binding enzyme N646_0690 PF00005 ABC transporter N646_0691 PF00528 Binding-protein-dependent transport system inner membrane component N646_0692 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_0694 PF00267 Gram-negative porin N646_0695 PF03466 LysR substrate binding domain N646_0695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0697 PF00873 AcrB/AcrD/AcrF family N646_0698 PF03466 LysR substrate binding domain N646_0698 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0700 PF03466 LysR substrate binding domain N646_0700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0701 PF01810 LysE type translocator N646_0703 PF06508 Queuosine biosynthesis protein QueC N646_0704 PF04055 Radical SAM superfamily N646_0707 PF00089 Trypsin N646_0709 PF16177 Acetyl-coenzyme A synthetase N-terminus N646_0709 PF00501 AMP-binding enzyme N646_0709 PF13193 AMP-binding enzyme C-terminal domain N646_0710 PF04303 PrpF protein N646_0711 PF00694 Aconitase C-terminal domain N646_0711 PF00330 Aconitase family (aconitate hydratase) N646_0712 PF00285 Citrate synthase, C-terminal domain N646_0718 PF01970 Tripartite tricarboxylate transporter TctA family N646_0720 PF01925 Sulfite exporter TauE/SafE N646_0721 PF16868 NMT1-like family N646_0723 PF01797 Transposase IS200 like N646_0724 PF05844 YopD protein N646_0726 PF07720 Tetratricopeptide repeat N646_0727 PF04792 V antigen (LcrV) protein N646_0729 PF09621 Type III secretion system regulator (LcrR) N646_0730 PF00771 FHIPEP family N646_0734 PF09059 TyeA N646_0736 PF02874 ATP synthase alpha/beta family, beta-barrel domain N646_0736 PF18269 T3SS EscN ATPase C-terminal domain N646_0736 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N646_0739 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N646_0740 PF00813 FliP family N646_0741 PF01313 Bacterial export proteins, family 3 N646_0742 PF01311 Bacterial export proteins, family 1 N646_0743 PF01312 FlhB HrpN YscU SpaS Family N646_0744 PF12833 Helix-turn-helix domain N646_0744 PF12852 Cupin N646_0751 PF02661 Fic/DOC family N646_0753 PF02108 Flagellar assembly protein FliH N646_0755 PF01514 Secretory protein of YscJ/FliF family N646_0756 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI N646_0758 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) N646_0759 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF N646_0761 PF16697 Inner membrane component of T3SS, cytoplasmic domain N646_0761 PF16693 Inner membrane component of T3SS, periplasmic domain N646_0765 PF12833 Helix-turn-helix domain N646_0769 PF00171 Aldehyde dehydrogenase family N646_0770 PF00158 Sigma-54 interaction domain N646_0770 PF01590 GAF domain N646_0770 PF02954 Bacterial regulatory protein, Fis family N646_0773 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain N646_0773 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N646_0774 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase N646_0775 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain N646_0775 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain N646_0776 PF02311 AraC-like ligand binding domain N646_0776 PF12833 Helix-turn-helix domain N646_0777 PF07715 TonB-dependent Receptor Plug Domain N646_0777 PF00593 TonB dependent receptor N646_0778 PF12431 Transcriptional regulator N646_0778 PF00072 Response regulator receiver domain N646_0779 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain N646_0779 PF17203 Single cache domain 3 N646_0779 PF00989 PAS fold N646_0779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0781 PF13533 Biotin-lipoyl like N646_0784 PF03466 LysR substrate binding domain N646_0784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_0787 PF08543 Phosphomethylpyrimidine kinase N646_0788 PF00155 Aminotransferase class I and II N646_0789 PF06826 Predicted Permease Membrane Region N646_0789 PF02080 TrkA-C domain N646_0792 PF13533 Biotin-lipoyl like N646_0795 PF00135 Carboxylesterase family N646_0796 PF13091 PLD-like domain N646_0797 PF17243 POTRA domain TamA domain 1 N646_0797 PF01103 Surface antigen N646_0798 PF11008 Protein of unknown function (DUF2846) N646_0799 PF01810 LysE type translocator N646_0800 PF01810 LysE type translocator N646_0801 PF07237 Protein of unknown function (DUF1428) N646_0804 PF01411 tRNA synthetases class II (A) N646_0804 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N646_0805 PF13302 Acetyltransferase (GNAT) domain N646_0806 PF12464 Maltose acetyltransferase N646_0806 PF14602 Hexapeptide repeat of succinyl-transferase N646_0820 PF07690 Major Facilitator Superfamily N646_0821 PF01648 4'-phosphopantetheinyl transferase superfamily N646_0821 PF17837 4'-phosphopantetheinyl transferase N-terminal domain N646_0823 PF00793 DAHP synthetase I family N646_0825 PF00425 chorismate binding enzyme N646_0826 PF00501 AMP-binding enzyme N646_0826 PF13193 AMP-binding enzyme C-terminal domain N646_0827 PF00550 Phosphopantetheine attachment site N646_0827 PF00857 Isochorismatase family N646_0828 PF01497 Periplasmic binding protein N646_0829 PF05977 Transmembrane secretion effector N646_0831 PF01032 FecCD transport family N646_0832 PF01032 FecCD transport family N646_0833 PF00005 ABC transporter N646_0834 PF00550 Phosphopantetheine attachment site N646_0834 PF00668 Condensation domain N646_0834 PF13193 AMP-binding enzyme C-terminal domain N646_0834 PF00501 AMP-binding enzyme N646_0835 PF03621 MbtH-like protein N646_0836 PF11806 Domain of unknown function (DUF3327) N646_0836 PF00756 Putative esterase N646_0837 PF07715 TonB-dependent Receptor Plug Domain N646_0841 PF13545 Crp-like helix-turn-helix domain N646_0841 PF00027 Cyclic nucleotide-binding domain N646_0856 PF00583 Acetyltransferase (GNAT) family N646_0859 PF00583 Acetyltransferase (GNAT) family N646_0893 PF05016 ParE toxin of type II toxin-antitoxin system, parDE N646_0894 PF13333 Integrase core domain N646_0894 PF00665 Integrase core domain N646_0894 PF13276 HTH-like domain N646_0898 PF13333 Integrase core domain N646_0898 PF00665 Integrase core domain N646_0898 PF13276 HTH-like domain N646_0900 PF13599 Pentapeptide repeats (9 copies) N646_0901 PF13333 Integrase core domain N646_0901 PF00665 Integrase core domain N646_0901 PF13276 HTH-like domain N646_0930 PF02798 Glutathione S-transferase, N-terminal domain N646_0930 PF00043 Glutathione S-transferase, C-terminal domain N646_0933 PF05016 ParE toxin of type II toxin-antitoxin system, parDE N646_0937 PF00857 Isochorismatase family N646_0947 PF05016 ParE toxin of type II toxin-antitoxin system, parDE N646_0948 PF00665 Integrase core domain N646_0948 PF13276 HTH-like domain N646_0948 PF13333 Integrase core domain N646_0953 PF00589 Phage integrase family N646_0953 PF13495 Phage integrase, N-terminal SAM-like domain N646_0956 PF13302 Acetyltransferase (GNAT) domain N646_0957 PF18024 Helix-turn-helix domain N646_0957 PF00158 Sigma-54 interaction domain N646_0958 PF05128 Domain of unknown function (DUF697) N646_0959 PF04317 YcjX-like family, DUF463 N646_0962 PF04715 Anthranilate synthase component I, N terminal region N646_0962 PF00425 chorismate binding enzyme N646_0963 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0963 PF00512 His Kinase A (phospho-acceptor) domain N646_0963 PF09308 LuxQ, periplasmic N646_0963 PF00072 Response regulator receiver domain N646_0965 PF00293 NUDIX domain N646_0966 PF03222 Tryptophan/tyrosine permease family N646_0967 PF03313 Serine dehydratase alpha chain N646_0967 PF03315 Serine dehydratase beta chain N646_0968 PF04940 Sensors of blue-light using FAD N646_0968 PF00563 EAL domain N646_0970 PF01242 6-pyruvoyl tetrahydropterin synthase N646_0972 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N646_0972 PF00672 HAMP domain N646_0972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_0972 PF00512 His Kinase A (phospho-acceptor) domain N646_0972 PF00072 Response regulator receiver domain N646_0972 PF01627 Hpt domain N646_0973 PF00563 EAL domain N646_0973 PF00990 Diguanylate cyclase, GGDEF domain N646_0973 PF03707 Bacterial signalling protein N terminal repeat N646_0974 PF00672 HAMP domain N646_0974 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_0974 PF17200 Single Cache domain 2 N646_0975 PF00152 tRNA synthetases class II (D, K and N) N646_0975 PF01336 OB-fold nucleic acid binding domain N646_0977 PF00392 Bacterial regulatory proteins, gntR family N646_0977 PF00155 Aminotransferase class I and II N646_0981 PF00155 Aminotransferase class I and II N646_0985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_0985 PF00672 HAMP domain N646_0986 PF02028 BCCT, betaine/carnitine/choline family transporter N646_0988 PF00072 Response regulator receiver domain N646_0988 PF00196 Bacterial regulatory proteins, luxR family N646_0989 PF17200 Single Cache domain 2 N646_0989 PF07730 Histidine kinase N646_0990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N646_0992 PF03480 Bacterial extracellular solute-binding protein, family 7 N646_0995 PF00753 Metallo-beta-lactamase superfamily N646_0996 PF05951 Bacterial protein of unknown function (DUF882) N646_0997 PF01471 Putative peptidoglycan binding domain N646_0997 PF03734 L,D-transpeptidase catalytic domain N646_1002 PF00925 GTP cyclohydrolase II N646_1004 PF03918 Cytochrome C biogenesis protein N646_1005 PF08534 Redoxin N646_1006 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal N646_1006 PF01578 Cytochrome C assembly protein N646_1007 PF03916 Polysulphide reductase, NrfD N646_1008 PF13247 4Fe-4S dicluster domain N646_1010 PF02335 Cytochrome c552 N646_1013 PF03989 DNA gyrase C-terminal domain, beta-propeller N646_1013 PF00521 DNA gyrase/topoisomerase IV, subunit A N646_1016 PF02867 Ribonucleotide reductase, barrel domain N646_1016 PF00317 Ribonucleotide reductase, all-alpha domain N646_1016 PF03477 ATP cone domain N646_1017 PF00268 Ribonucleotide reductase, small chain N646_1019 PF00994 Probable molybdopterin binding domain N646_1022 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N646_1023 PF16653 Saccharopine dehydrogenase C-terminal domain N646_1023 PF03435 Saccharopine dehydrogenase NADP binding domain N646_1024 PF00202 Aminotransferase class-III N646_1026 PF01066 CDP-alcohol phosphatidyltransferase N646_1027 PF01541 GIY-YIG catalytic domain N646_1027 PF02151 UvrB/uvrC motif N646_1027 PF08459 UvrC Helix-hairpin-helix N-terminal N646_1028 PF00196 Bacterial regulatory proteins, luxR family N646_1028 PF00072 Response regulator receiver domain N646_1029 PF03104 DNA polymerase family B, exonuclease domain N646_1029 PF00136 DNA polymerase family B N646_1031 PF08207 Elongation factor P (EF-P) KOW-like domain N646_1031 PF01132 Elongation factor P (EF-P) OB domain N646_1031 PF09285 Elongation factor P, C-terminal N646_1032 PF04269 Protein of unknown function, DUF440 N646_1033 PF01479 S4 domain N646_1033 PF00849 RNA pseudouridylate synthase N646_1035 PF01300 Telomere recombination N646_1036 PF02811 PHP domain N646_1037 PF08056 Tryptophan operon leader peptide N646_1038 PF04715 Anthranilate synthase component I, N terminal region N646_1038 PF00425 chorismate binding enzyme N646_1039 PF00117 Glutamine amidotransferase class-I N646_1040 PF02885 Glycosyl transferase family, helical bundle domain N646_1040 PF00591 Glycosyl transferase family, a/b domain N646_1041 PF00218 Indole-3-glycerol phosphate synthase N646_1041 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase N646_1042 PF00291 Pyridoxal-phosphate dependent enzyme N646_1043 PF00290 Tryptophan synthase alpha chain N646_1044 PF00027 Cyclic nucleotide-binding domain N646_1044 PF13545 Crp-like helix-turn-helix domain N646_1045 PF00501 AMP-binding enzyme N646_1045 PF13193 AMP-binding enzyme C-terminal domain N646_1047 PF00375 Sodium:dicarboxylate symporter family N646_1048 PF17327 Acyl homoserine lactone synthase N646_1049 PF00072 Response regulator receiver domain N646_1049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1051 PF04279 Intracellular septation protein A N646_1052 PF03061 Thioesterase superfamily N646_1053 PF03795 YCII-related domain N646_1055 PF01717 Cobalamin-independent synthase, Catalytic domain N646_1055 PF08267 Cobalamin-independent synthase, N-terminal domain N646_1056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1056 PF03466 LysR substrate binding domain N646_1059 PF00990 Diguanylate cyclase, GGDEF domain N646_1059 PF08447 PAS fold N646_1059 PF00563 EAL domain N646_1059 PF08448 PAS fold N646_1060 PF04055 Radical SAM superfamily N646_1060 PF11842 Domain of unknown function (DUF3362) N646_1060 PF08497 Radical SAM N-terminal N646_1064 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase N646_1065 PF00535 Glycosyl transferase family 2 N646_1066 PF00072 Response regulator receiver domain N646_1066 PF00486 Transcriptional regulatory protein, C terminal N646_1067 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1067 PF00512 His Kinase A (phospho-acceptor) domain N646_1067 PF00672 HAMP domain N646_1070 PF03466 LysR substrate binding domain N646_1070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1071 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_1071 PF00529 HlyD membrane-fusion protein of T1SS N646_1073 PF08267 Cobalamin-independent synthase, N-terminal domain N646_1073 PF01717 Cobalamin-independent synthase, Catalytic domain N646_1077 PF00005 ABC transporter N646_1077 PF02687 FtsX-like permease family N646_1077 PF12704 MacB-like periplasmic core domain N646_1078 PF12704 MacB-like periplasmic core domain N646_1078 PF00005 ABC transporter N646_1078 PF02687 FtsX-like permease family N646_1079 PF02687 FtsX-like permease family N646_1079 PF00005 ABC transporter N646_1079 PF12704 MacB-like periplasmic core domain N646_1081 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_1085 PF00085 Thioredoxin N646_1086 PF02683 Cytochrome C biogenesis protein transmembrane region N646_1086 PF11412 Disulphide bond corrector protein DsbC N646_1088 PF00072 Response regulator receiver domain N646_1088 PF00196 Bacterial regulatory proteins, luxR family N646_1089 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1089 PF00512 His Kinase A (phospho-acceptor) domain N646_1090 PF13247 4Fe-4S dicluster domain N646_1091 PF03916 Polysulphide reductase, NrfD N646_1092 PF00384 Molybdopterin oxidoreductase N646_1092 PF01568 Molydopterin dinucleotide binding domain N646_1092 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N646_1093 PF00034 Cytochrome c N646_1094 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N646_1095 PF04403 Paraquat-inducible protein A N646_1096 PF02470 MlaD protein N646_1100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_1101 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family N646_1102 PF18073 Rubredoxin metal binding domain N646_1103 PF06305 Lipopolysaccharide assembly protein A domain N646_1104 PF00216 Bacterial DNA-binding protein N646_1105 PF00575 S1 RNA binding domain N646_1106 PF02224 Cytidylate kinase N646_1108 PF01343 Peptidase family S49 N646_1108 PF08496 Peptidase family S49 N-terminal N646_1109 PF00106 short chain dehydrogenase N646_1112 PF07733 Bacterial DNA polymerase III alpha NTPase domain N646_1112 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N646_1112 PF14579 Helix-hairpin-helix motif N646_1112 PF01336 OB-fold nucleic acid binding domain N646_1112 PF02811 PHP domain N646_1113 PF00072 Response regulator receiver domain N646_1113 PF01584 CheW-like domain N646_1115 PF00480 ROK family N646_1116 PF00224 Pyruvate kinase, barrel domain N646_1116 PF02887 Pyruvate kinase, alpha/beta domain N646_1117 PF01734 Patatin-like phospholipase N646_1120 PF00209 Sodium:neurotransmitter symporter family N646_1122 PF00367 phosphotransferase system, EIIB N646_1122 PF02378 Phosphotransferase system, EIIC N646_1123 PF01026 TatD related DNase N646_1124 PF09115 DNA polymerase III, delta subunit, C terminal N646_1125 PF02223 Thymidylate kinase N646_1126 PF02618 YceG-like family N646_1127 PF01063 Amino-transferase class IV N646_1128 PF00109 Beta-ketoacyl synthase, N-terminal domain N646_1128 PF02801 Beta-ketoacyl synthase, C-terminal domain N646_1129 PF00550 Phosphopantetheine attachment site N646_1131 PF00698 Acyl transferase domain N646_1132 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N646_1132 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N646_1133 PF02504 Fatty acid synthesis protein N646_1134 PF01783 Ribosomal L32p protein family N646_1135 PF02620 Large ribosomal RNA subunit accumulation protein YceD N646_1136 PF02545 Maf-like protein N646_1137 PF00849 RNA pseudouridylate synthase N646_1137 PF01479 S4 domain N646_1138 PF00575 S1 RNA binding domain N646_1138 PF10150 Ribonuclease E/G family N646_1138 PF12111 Polyribonucleotide phosphorylase C terminal N646_1139 PF00916 Sulfate permease family N646_1139 PF01740 STAS domain N646_1140 PF01451 Low molecular weight phosphotyrosine protein phosphatase N646_1141 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP N646_1141 PF12557 Cob(I)alamin adenosyltransferase N terminal N646_1143 PF00485 Phosphoribulokinase / Uridine kinase family N646_1144 PF10609 NUBPL iron-transfer P-loop NTPase N646_1145 PF09334 tRNA synthetases class I (M) N646_1145 PF01588 Putative tRNA binding domain N646_1147 PF07840 FadR C-terminal domain N646_1147 PF00392 Bacterial regulatory proteins, gntR family N646_1148 PF06450 Bacterial Na+/H+ antiporter B (NhaB) N646_1149 PF02600 Disulfide bond formation protein DsbB N646_1150 PF07516 SecA Wing and Scaffold domain N646_1150 PF01043 SecA preprotein cross-linking domain N646_1150 PF07517 SecA DEAD-like domain N646_1150 PF02810 SEC-C motif N646_1151 PF01207 Dihydrouridine synthase (Dus) N646_1152 PF17158 Membrane-associated sensor, integral membrane domain N646_1152 PF00990 Diguanylate cyclase, GGDEF domain N646_1153 PF02903 Alpha amylase, N-terminal ig-like domain N646_1153 PF00128 Alpha amylase, catalytic domain N646_1154 PF00005 ABC transporter N646_1155 PF02653 Branched-chain amino acid transport system / permease component N646_1157 PF04217 Protein of unknown function, DUF412 N646_1158 PF00871 Acetokinase family N646_1159 PF07085 DRTGG domain N646_1159 PF01515 Phosphate acetyl/butaryl transferase N646_1161 PF13409 Glutathione S-transferase, N-terminal domain N646_1162 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_1162 PF00005 ABC transporter N646_1163 PF00005 ABC transporter N646_1163 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_1164 PF12911 N-terminal TM domain of oligopeptide transport permease C N646_1164 PF00528 Binding-protein-dependent transport system inner membrane component N646_1165 PF00528 Binding-protein-dependent transport system inner membrane component N646_1166 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_1167 PF02391 MoaE protein N646_1168 PF02597 ThiS family N646_1169 PF01967 MoaC family N646_1170 PF00994 Probable molybdopterin binding domain N646_1171 PF04055 Radical SAM superfamily N646_1171 PF06463 Molybdenum Cofactor Synthesis C N646_1172 PF01933 Uncharacterised protein family UPF0052 N646_1173 PF01627 Hpt domain N646_1174 PF00072 Response regulator receiver domain N646_1174 PF00158 Sigma-54 interaction domain N646_1174 PF02954 Bacterial regulatory protein, Fis family N646_1175 PF17757 UvrB interaction domain N646_1175 PF12344 Ultra-violet resistance protein B N646_1175 PF02151 UvrB/uvrC motif N646_1175 PF00271 Helicase conserved C-terminal domain N646_1175 PF04851 Type III restriction enzyme, res subunit N646_1176 PF02901 Pyruvate formate lyase-like N646_1176 PF01228 Glycine radical N646_1177 PF02508 Rnf-Nqr subunit, membrane protein N646_1178 PF04060 Putative Fe-S cluster N646_1179 PF13375 RnfC Barrel sandwich hybrid domain N646_1179 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit N646_1179 PF12838 4Fe-4S dicluster domain N646_1179 PF10531 SLBB domain N646_1180 PF03116 NQR2, RnfD, RnfE family N646_1181 PF04205 FMN-binding domain N646_1182 PF02508 Rnf-Nqr subunit, membrane protein N646_1183 PF10576 Iron-sulfur binding domain of endonuclease III N646_1183 PF00730 HhH-GPD superfamily base excision DNA repair protein N646_1183 PF00633 Helix-hairpin-helix motif N646_1184 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N646_1185 PF10952 Protein of unknown function (DUF2753) N646_1186 PF18393 MotY N-terminal domain N646_1186 PF00691 OmpA family N646_1188 PF00929 Exonuclease N646_1189 PF13726 Na+-H+ antiporter family N646_1189 PF03553 Na+/H+ antiporter family N646_1226 PF06892 Phage regulatory protein CII (CP76) N646_1233 PF02899 Phage integrase, N-terminal SAM-like domain N646_1233 PF00589 Phage integrase family N646_1236 PF00462 Glutaredoxin N646_1237 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N646_1237 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N646_1240 PF00465 Iron-containing alcohol dehydrogenase N646_1240 PF00171 Aldehyde dehydrogenase family N646_1241 PF01914 MarC family integral membrane protein N646_1242 PF00520 Ion transport protein N646_1242 PF00027 Cyclic nucleotide-binding domain N646_1243 PF02774 Semialdehyde dehydrogenase, dimerisation domain N646_1243 PF01118 Semialdehyde dehydrogenase, NAD binding domain N646_1244 PF03553 Na+/H+ antiporter family N646_1247 PF04245 37-kD nucleoid-associated bacterial protein N646_1248 PF07208 Protein of unknown function (DUF1414) N646_1249 PF11893 Domain of unknown function (DUF3413) N646_1249 PF00884 Sulfatase N646_1250 PF00850 Histone deacetylase domain N646_1252 PF00106 short chain dehydrogenase N646_1255 PF01751 Toprim domain N646_1255 PF01131 DNA topoisomerase N646_1256 PF00881 Nitroreductase family N646_1258 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N646_1258 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_1259 PF01343 Peptidase family S49 N646_1260 PF00710 Asparaginase, N-terminal N646_1260 PF17763 Glutaminase/Asparaginase C-terminal domain N646_1261 PF07023 Protein of unknown function (DUF1315) N646_1263 PF01641 SelR domain N646_1264 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N646_1264 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N646_1265 PF01263 Aldose 1-epimerase N646_1266 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_1266 PF08447 PAS fold N646_1266 PF13426 PAS domain N646_1267 PF13847 Methyltransferase domain N646_1271 PF00245 Alkaline phosphatase N646_1273 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N646_1274 PF03992 Antibiotic biosynthesis monooxygenase N646_1275 PF00924 Mechanosensitive ion channel N646_1275 PF05552 Conserved TM helix N646_1276 PF03692 Putative zinc- or iron-chelating domain N646_1277 PF04226 Transglycosylase associated protein N646_1278 PF03692 Putative zinc- or iron-chelating domain N646_1279 PF00230 Major intrinsic protein N646_1280 PF02132 RecR protein N646_1280 PF13662 Toprim domain N646_1281 PF02575 YbaB/EbfC DNA-binding family N646_1282 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding N646_1282 PF12170 DNA polymerase III tau subunit V interacting with alpha N646_1282 PF12169 DNA polymerase III subunits gamma and tau domain III N646_1283 PF00156 Phosphoribosyl transferase domain N646_1286 PF00072 Response regulator receiver domain N646_1287 PF03466 LysR substrate binding domain N646_1287 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1288 PF00156 Phosphoribosyl transferase domain N646_1289 PF02674 Colicin V production protein N646_1290 PF05036 Sporulation related domain N646_1291 PF08245 Mur ligase middle domain N646_1291 PF02875 Mur ligase family, glutamate ligase domain N646_1292 PF17848 Acetyl-coA carboxylase zinc finger domain N646_1292 PF01039 Carboxyl transferase domain N646_1293 PF01416 tRNA pseudouridine synthase N646_1295 PF01118 Semialdehyde dehydrogenase, NAD binding domain N646_1295 PF02774 Semialdehyde dehydrogenase, dimerisation domain N646_1296 PF11890 Domain of unknown function (DUF3410) N646_1296 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N646_1296 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N646_1297 PF00109 Beta-ketoacyl synthase, N-terminal domain N646_1297 PF02801 Beta-ketoacyl synthase, C-terminal domain N646_1298 PF01266 FAD dependent oxidoreductase N646_1298 PF05430 S-adenosyl-L-methionine-dependent methyltransferase N646_1299 PF03358 NADPH-dependent FMN reductase N646_1301 PF08891 YfcL protein N646_1302 PF04315 Elongation factor P hydroxylase N646_1303 PF03458 UPF0126 domain N646_1304 PF01264 Chorismate synthase N646_1305 PF05175 Methyltransferase small domain N646_1306 PF01713 Smr domain N646_1307 PF00300 Histidine phosphatase superfamily (branch 1) N646_1308 PF05193 Peptidase M16 inactive domain N646_1308 PF00675 Insulinase (Peptidase family M16) N646_1308 PF16187 Middle or third domain of peptidase_M16 N646_1310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N646_1310 PF00378 Enoyl-CoA hydratase/isomerase N646_1310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N646_1311 PF00108 Thiolase, N-terminal domain N646_1311 PF02803 Thiolase, C-terminal domain N646_1313 PF08281 Sigma-70, region 4 N646_1313 PF04542 Sigma-70 region 2 N646_1315 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N646_1316 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N646_1317 PF04333 MlaA lipoprotein N646_1318 PF03918 Cytochrome C biogenesis protein N646_1319 PF03918 Cytochrome C biogenesis protein N646_1320 PF08534 Redoxin N646_1321 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal N646_1321 PF01578 Cytochrome C assembly protein N646_1322 PF03100 CcmE N646_1323 PF04995 Heme exporter protein D (CcmD) N646_1324 PF01578 Cytochrome C assembly protein N646_1325 PF03379 CcmB protein N646_1326 PF00005 ABC transporter N646_1329 PF01584 CheW-like domain N646_1331 PF13614 AAA domain N646_1332 PF00072 Response regulator receiver domain N646_1332 PF01339 CheB methylesterase N646_1333 PF07194 P2 response regulator binding domain N646_1333 PF01627 Hpt domain N646_1333 PF01584 CheW-like domain N646_1333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1333 PF02895 Signal transducing histidine kinase, homodimeric domain N646_1334 PF04344 Chemotaxis phosphatase, CheZ N646_1335 PF00072 Response regulator receiver domain N646_1336 PF04545 Sigma-70, region 4 N646_1336 PF04542 Sigma-70 region 2 N646_1336 PF04539 Sigma-70 region 3 N646_1337 PF10609 NUBPL iron-transfer P-loop NTPase N646_1338 PF00448 SRP54-type protein, GTPase domain N646_1339 PF00771 FHIPEP family N646_1340 PF01312 FlhB HrpN YscU SpaS Family N646_1341 PF01311 Bacterial export proteins, family 1 N646_1342 PF01313 Bacterial export proteins, family 3 N646_1343 PF00813 FliP family N646_1344 PF04347 Flagellar biosynthesis protein, FliO N646_1345 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N646_1346 PF02154 Flagellar motor switch protein FliM N646_1346 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N646_1353 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N646_1353 PF18269 T3SS EscN ATPase C-terminal domain N646_1355 PF14841 FliG middle domain N646_1355 PF01706 FliG C-terminal domain N646_1355 PF14842 FliG N-terminal domain N646_1356 PF01514 Secretory protein of YscJ/FliF family N646_1356 PF08345 Flagellar M-ring protein C-terminal N646_1357 PF02049 Flagellar hook-basal body complex protein FliE N646_1358 PF02954 Bacterial regulatory protein, Fis family N646_1358 PF00158 Sigma-54 interaction domain N646_1358 PF00072 Response regulator receiver domain N646_1359 PF00512 His Kinase A (phospho-acceptor) domain N646_1359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1360 PF02954 Bacterial regulatory protein, Fis family N646_1360 PF00158 Sigma-54 interaction domain N646_1360 PF00072 Response regulator receiver domain N646_1361 PF02561 Flagellar protein FliS N646_1363 PF07195 Flagellar hook-associated protein 2 C-terminus N646_1363 PF02465 Flagellar hook-associated protein 2 N-terminus N646_1363 PF07196 Flagellin hook IN motif N646_1364 PF03646 FlaG protein N646_1365 PF00700 Bacterial flagellin C-terminal helical region N646_1365 PF07196 Flagellin hook IN motif N646_1365 PF00669 Bacterial flagellin N-terminal helical region N646_1366 PF00669 Bacterial flagellin N-terminal helical region N646_1366 PF07196 Flagellin hook IN motif N646_1366 PF00700 Bacterial flagellin C-terminal helical region N646_1367 PF07196 Flagellin hook IN motif N646_1367 PF00669 Bacterial flagellin N-terminal helical region N646_1367 PF00700 Bacterial flagellin C-terminal helical region N646_1368 PF04261 Dyp-type peroxidase family N646_1369 PF11143 Protein of unknown function (DUF2919) N646_1373 PF03960 ArsC family N646_1374 PF07687 Peptidase dimerisation domain N646_1374 PF01546 Peptidase family M20/M25/M40 N646_1378 PF00701 Dihydrodipicolinate synthetase family N646_1380 PF00578 AhpC/TSA family N646_1381 PF01594 AI-2E family transporter N646_1383 PF13181 Tetratricopeptide repeat N646_1383 PF01435 Peptidase family M48 N646_1384 PF03960 ArsC family N646_1385 PF03358 NADPH-dependent FMN reductase N646_1388 PF00860 Permease family N646_1390 PF02769 AIR synthase related protein, C-terminal domain N646_1390 PF00586 AIR synthase related protein, N-terminal domain N646_1391 PF00551 Formyl transferase N646_1393 PF13230 Glutamine amidotransferases class-II N646_1394 PF13580 SIS domain N646_1395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N646_1395 PF02770 Acyl-CoA dehydrogenase, middle domain N646_1395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N646_1395 PF09317 Domain of unknown function (DUF1974) N646_1396 PF01740 STAS domain N646_1396 PF00916 Sulfate permease family N646_1401 PF00929 Exonuclease N646_1402 PF00075 RNase H N646_1403 PF08241 Methyltransferase domain N646_1404 PF16123 Hydroxyacylglutathione hydrolase C-terminus N646_1404 PF00753 Metallo-beta-lactamase superfamily N646_1405 PF01464 Transglycosylase SLT domain N646_1405 PF01476 LysM domain N646_1407 PF03372 Endonuclease/Exonuclease/phosphatase family N646_1408 PF00543 Nitrogen regulatory protein P-II N646_1409 PF00034 Cytochrome c N646_1410 PF11734 TilS substrate C-terminal domain N646_1410 PF09179 TilS substrate binding domain N646_1410 PF01171 PP-loop family N646_1411 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit N646_1412 PF02811 PHP domain N646_1412 PF14579 Helix-hairpin-helix motif N646_1412 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N646_1412 PF07733 Bacterial DNA polymerase III alpha NTPase domain N646_1412 PF01336 OB-fold nucleic acid binding domain N646_1413 PF01351 Ribonuclease HII N646_1414 PF02684 Lipid-A-disaccharide synthetase N646_1415 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 N646_1415 PF00132 Bacterial transferase hexapeptide (six repeats) N646_1416 PF07977 FabA-like domain N646_1418 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD N646_1418 PF00132 Bacterial transferase hexapeptide (six repeats) N646_1419 PF03938 Outer membrane protein (OmpH-like) N646_1420 PF01103 Surface antigen N646_1420 PF07244 Surface antigen variable number repeat N646_1421 PF02163 Peptidase family M50 N646_1421 PF17820 PDZ domain N646_1422 PF13288 DXP reductoisomerase C-terminal domain N646_1422 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase N646_1422 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain N646_1424 PF01255 Putative undecaprenyl diphosphate synthase N646_1425 PF01765 Ribosome recycling factor N646_1426 PF00696 Amino acid kinase family N646_1427 PF00889 Elongation factor TS N646_1428 PF00318 Ribosomal protein S2 N646_1429 PF00557 Metallopeptidase family M24 N646_1430 PF08335 GlnD PII-uridylyltransferase N646_1430 PF01909 Nucleotidyltransferase domain N646_1430 PF01842 ACT domain N646_1430 PF01966 HD domain N646_1431 PF11944 Protein of unknown function (DUF3461) N646_1432 PF00849 RNA pseudouridylate synthase N646_1433 PF00849 RNA pseudouridylate synthase N646_1433 PF04287 tRNA pseudouridine synthase C N646_1438 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 N646_1439 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N646_1439 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N646_1440 PF01370 NAD dependent epimerase/dehydratase family N646_1445 PF03806 AbgT putative transporter family N646_1446 PF01197 Ribosomal protein L31 N646_1447 PF18389 TrmO C-terminal domain N646_1447 PF01980 tRNA-methyltransferase O N646_1448 PF03129 Anticodon binding domain N646_1448 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) N646_1448 PF04073 Aminoacyl-tRNA editing domain N646_1450 PF06786 Uncharacterised protein family (UPF0253) N646_1452 PF00209 Sodium:neurotransmitter symporter family N646_1453 PF00704 Glycosyl hydrolases family 18 N646_1453 PF06483 Chitinase C N646_1455 PF01272 Transcription elongation factor, GreA/GreB, C-term N646_1455 PF03449 Transcription elongation factor, N-terminal N646_1456 PF00271 Helicase conserved C-terminal domain N646_1456 PF09382 RQC domain N646_1456 PF16124 RecQ zinc-binding N646_1456 PF00570 HRDC domain N646_1456 PF00270 DEAD/DEAH box helicase N646_1457 PF00817 impB/mucB/samB family N646_1457 PF11799 impB/mucB/samB family C-terminal domain N646_1457 PF11798 IMS family HHH motif N646_1459 PF00072 Response regulator receiver domain N646_1459 PF00990 Diguanylate cyclase, GGDEF domain N646_1461 PF02424 ApbE family N646_1462 PF02424 ApbE family N646_1463 PF00175 Oxidoreductase NAD-binding domain N646_1463 PF00970 Oxidoreductase FAD-binding domain N646_1463 PF00111 2Fe-2S iron-sulfur cluster binding domain N646_1464 PF02508 Rnf-Nqr subunit, membrane protein N646_1465 PF02508 Rnf-Nqr subunit, membrane protein N646_1466 PF04205 FMN-binding domain N646_1467 PF03116 NQR2, RnfD, RnfE family N646_1468 PF11973 NQRA C-terminal domain N646_1468 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) N646_1469 PF01722 BolA-like protein N646_1470 PF05175 Methyltransferase small domain N646_1471 PF03923 Uncharacterized lipoprotein N646_1471 PF08139 Prokaryotic membrane lipoprotein lipid attachment site N646_1472 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N646_1473 PF07690 Major Facilitator Superfamily N646_1475 PF04545 Sigma-70, region 4 N646_1475 PF04542 Sigma-70 region 2 N646_1478 PF03502 Nucleoside-specific channel-forming protein, Tsx N646_1479 PF02558 Ketopantoate reductase PanE/ApbA N646_1479 PF08546 Ketopantoate reductase PanE/ApbA C terminal N646_1480 PF01965 DJ-1/PfpI family N646_1481 PF00266 Aminotransferase class-V N646_1482 PF00990 Diguanylate cyclase, GGDEF domain N646_1482 PF17158 Membrane-associated sensor, integral membrane domain N646_1483 PF02657 Fe-S metabolism associated domain N646_1484 PF00899 ThiF family N646_1485 PF03562 MltA specific insert domain N646_1485 PF06725 3D domain N646_1487 PF00696 Amino acid kinase family N646_1487 PF00583 Acetyltransferase (GNAT) family N646_1490 PF13538 UvrD-like helicase C-terminal domain N646_1491 PF13361 UvrD-like helicase C-terminal domain N646_1491 PF00580 UvrD/REP helicase N-terminal domain N646_1491 PF12705 PD-(D/E)XK nuclease superfamily N646_1492 PF17946 RecC C-terminal domain N646_1493 PF11893 Domain of unknown function (DUF3413) N646_1493 PF00884 Sulfatase N646_1495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1495 PF03466 LysR substrate binding domain N646_1496 PF07130 YebG protein N646_1499 PF14602 Hexapeptide repeat of succinyl-transferase N646_1499 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle N646_1500 PF03009 Glycerophosphoryl diester phosphodiesterase family N646_1501 PF07690 Major Facilitator Superfamily N646_1502 PF00230 Major intrinsic protein N646_1503 PF00370 FGGY family of carbohydrate kinases, N-terminal domain N646_1503 PF02782 FGGY family of carbohydrate kinases, C-terminal domain N646_1504 PF00455 DeoR C terminal sensor domain N646_1504 PF08220 DeoR-like helix-turn-helix domain N646_1505 PF01266 FAD dependent oxidoreductase N646_1505 PF16901 C-terminal domain of alpha-glycerophosphate oxidase N646_1506 PF01544 CorA-like Mg2+ transporter protein N646_1507 PF01797 Transposase IS200 like N646_1511 PF00356 Bacterial regulatory proteins, lacI family N646_1512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1512 PF03466 LysR substrate binding domain N646_1514 PF00196 Bacterial regulatory proteins, luxR family N646_1520 PF00501 AMP-binding enzyme N646_1521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1521 PF03466 LysR substrate binding domain N646_1522 PF00009 Elongation factor Tu GTP binding domain N646_1522 PF03144 Elongation factor Tu domain 2 N646_1522 PF00679 Elongation factor G C-terminus N646_1522 PF03764 Elongation factor G, domain IV N646_1522 PF14492 Elongation Factor G, domain II N646_1523 PF18073 Rubredoxin metal binding domain N646_1525 PF18429 Domain of unknown function (DUF5609) N646_1527 PF01048 Phosphorylase superfamily N646_1528 PF01676 Metalloenzyme superfamily N646_1529 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain N646_1529 PF00591 Glycosyl transferase family, a/b domain N646_1529 PF02885 Glycosyl transferase family, helical bundle domain N646_1530 PF01791 DeoC/LacD family aldolase N646_1532 PF07662 Na+ dependent nucleoside transporter C-terminus N646_1532 PF01773 Na+ dependent nucleoside transporter N-terminus N646_1532 PF07670 Nucleoside recognition N646_1533 PF01026 TatD related DNase N646_1535 PF03144 Elongation factor Tu domain 2 N646_1535 PF00009 Elongation factor Tu GTP binding domain N646_1535 PF16658 Class II release factor RF3, C-terminal domain N646_1539 PF13508 Acetyltransferase (GNAT) domain N646_1542 PF03707 Bacterial signalling protein N terminal repeat N646_1542 PF00563 EAL domain N646_1542 PF00990 Diguanylate cyclase, GGDEF domain N646_1545 PF01554 MatE N646_1547 PF07719 Tetratricopeptide repeat N646_1547 PF13181 Tetratricopeptide repeat N646_1548 PF00013 KH domain N646_1548 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain N646_1548 PF01138 3' exoribonuclease family, domain 1 N646_1548 PF03725 3' exoribonuclease family, domain 2 N646_1548 PF00575 S1 RNA binding domain N646_1549 PF00312 Ribosomal protein S15 N646_1550 PF01509 TruB family pseudouridylate synthase (N terminal domain) N646_1550 PF16198 tRNA pseudouridylate synthase B C-terminal domain N646_1550 PF09157 Pseudouridine synthase II TruB, C-terminal N646_1551 PF02033 Ribosome-binding factor A N646_1552 PF04760 Translation initiation factor IF-2, N-terminal region N646_1552 PF11987 Translation-initiation factor 2 N646_1552 PF00009 Elongation factor Tu GTP binding domain N646_1552 PF08364 Bacterial translation initiation factor IF-2 associated region N646_1553 PF08529 NusA N-terminal domain N646_1553 PF00575 S1 RNA binding domain N646_1553 PF13184 NusA-like KH domain N646_1554 PF02576 RimP N-terminal domain N646_1554 PF17384 RimP C-terminal SH3 domain N646_1555 PF03840 Preprotein translocase SecG subunit N646_1556 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N646_1556 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N646_1556 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N646_1556 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N646_1557 PF00809 Pterin binding enzyme N646_1558 PF17862 AAA+ lid domain N646_1558 PF06480 FtsH Extracellular N646_1558 PF01434 Peptidase family M41 N646_1558 PF00004 ATPase family associated with various cellular activities (AAA) N646_1559 PF01728 FtsJ-like methyltransferase N646_1560 PF01985 CRS1 / YhbY (CRM) domain N646_1561 PF01272 Transcription elongation factor, GreA/GreB, C-term N646_1561 PF03449 Transcription elongation factor, N-terminal N646_1562 PF13609 Gram-negative porin N646_1563 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family N646_1566 PF00579 tRNA synthetases class I (W and Y) N646_1567 PF01476 LysM domain N646_1567 PF01551 Peptidase family M23 N646_1567 PF08525 Opacity-associated protein A N-terminal motif N646_1568 PF00873 AcrB/AcrD/AcrF family N646_1570 PF01521 Iron-sulphur cluster biosynthesis N646_1571 PF00202 Aminotransferase class-III N646_1573 PF01594 AI-2E family transporter N646_1574 PF08468 Methyltransferase small domain N-terminal N646_1574 PF05175 Methyltransferase small domain N646_1575 PF00512 His Kinase A (phospho-acceptor) domain N646_1575 PF00072 Response regulator receiver domain N646_1575 PF09308 LuxQ, periplasmic N646_1575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1576 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_1577 PF00528 Binding-protein-dependent transport system inner membrane component N646_1578 PF00528 Binding-protein-dependent transport system inner membrane component N646_1578 PF12911 N-terminal TM domain of oligopeptide transport permease C N646_1579 PF00005 ABC transporter N646_1579 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_1580 PF00005 ABC transporter N646_1580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_1582 PF01869 BadF/BadG/BcrA/BcrD ATPase family N646_1583 PF02838 Glycosyl hydrolase family 20, domain 2 N646_1583 PF00728 Glycosyl hydrolase family 20, catalytic domain N646_1584 PF06165 Glycosyltransferase family 36 N646_1584 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain N646_1585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N646_1585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N646_1585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N646_1585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N646_1586 PF00005 ABC transporter N646_1586 PF08402 TOBE domain N646_1588 PF13416 Bacterial extracellular solute-binding protein N646_1589 PF00909 Ammonium Transporter Family N646_1590 PF00543 Nitrogen regulatory protein P-II N646_1591 PF06062 Uncharacterised protein family (UPF0231) N646_1592 PF11791 Aconitate B N-terminal domain N646_1592 PF00330 Aconitase family (aconitate hydratase) N646_1592 PF06434 Aconitate hydratase 2 N-terminus N646_1593 PF01734 Patatin-like phospholipase N646_1594 PF00912 Transglycosylase N646_1594 PF14814 Bifunctional transglycosylase second domain N646_1594 PF00905 Penicillin binding protein transpeptidase domain N646_1595 PF08482 ATP-dependent helicase C-terminal N646_1595 PF00271 Helicase conserved C-terminal domain N646_1595 PF00270 DEAD/DEAH box helicase N646_1595 PF04408 Helicase associated domain (HA2) N646_1596 PF17746 SfsA N-terminal OB domain N646_1596 PF03749 Sugar fermentation stimulation protein RE domain N646_1597 PF01258 Prokaryotic dksA/traR C4-type zinc finger N646_1598 PF00749 tRNA synthetases class I (E and Q), catalytic domain N646_1599 PF12626 Polymerase A arginine-rich C-terminus N646_1599 PF12627 Probable RNA and SrmB- binding site of polymerase A N646_1599 PF01743 Poly A polymerase head domain N646_1600 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) N646_1601 PF02548 Ketopantoate hydroxymethyltransferase N646_1602 PF02569 Pantoate-beta-alanine ligase N646_1603 PF03279 Bacterial lipid A biosynthesis acyltransferase N646_1604 PF01061 ABC-2 type transporter N646_1605 PF00005 ABC transporter N646_1606 PF00916 Sulfate permease family N646_1606 PF01740 STAS domain N646_1607 PF00484 Carbonic anhydrase N646_1608 PF00156 Phosphoribosyl transferase domain N646_1609 PF00440 Bacterial regulatory proteins, tetR family N646_1610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N646_1610 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_1611 PF02817 e3 binding domain N646_1611 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N646_1611 PF00364 Biotin-requiring enzyme N646_1612 PF00456 Transketolase, thiamine diphosphate binding domain N646_1612 PF17831 Pyruvate dehydrogenase E1 component middle domain N646_1613 PF00392 Bacterial regulatory proteins, gntR family N646_1613 PF07729 FCD domain N646_1614 PF01510 N-acetylmuramoyl-L-alanine amidase N646_1615 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain N646_1615 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain N646_1616 PF00114 Pilin (bacterial filament) N646_1616 PF07963 Prokaryotic N-terminal methylation motif N646_1617 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain N646_1617 PF00437 Type II/IV secretion system protein N646_1618 PF00482 Type II secretion system (T2SS), protein F N646_1619 PF06750 Bacterial Peptidase A24 N-terminal domain N646_1619 PF01478 Type IV leader peptidase family N646_1620 PF01121 Dephospho-CoA kinase N646_1621 PF07072 Cell division protein N646_1622 PF03884 DNA gyrase inhibitor YacG N646_1623 PF01245 Ribosomal protein L19 N646_1624 PF01746 tRNA (Guanine-1)-methyltransferase N646_1625 PF05239 PRC-barrel domain N646_1625 PF01782 RimM N-terminal domain N646_1626 PF00886 Ribosomal protein S16 N646_1627 PF00448 SRP54-type protein, GTPase domain N646_1627 PF02881 SRP54-type protein, helical bundle domain N646_1627 PF02978 Signal peptide binding domain N646_1628 PF01578 Cytochrome C assembly protein N646_1629 PF00571 CBS domain N646_1629 PF01595 Cyclin M transmembrane N-terminal domain N646_1629 PF03471 Transporter associated domain N646_1630 PF02664 S-Ribosylhomocysteinase (LuxS) N646_1632 PF04262 Glutamate-cysteine ligase N646_1633 PF05193 Peptidase M16 inactive domain N646_1633 PF00675 Insulinase (Peptidase family M16) N646_1634 PF09335 SNARE associated Golgi protein N646_1636 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit N646_1637 PF00682 HMGL-like N646_1637 PF02436 Conserved carboxylase domain N646_1637 PF00364 Biotin-requiring enzyme N646_1638 PF04277 Oxaloacetate decarboxylase, gamma chain N646_1640 PF02599 Global regulator protein family N646_1641 PF13840 ACT domain N646_1641 PF01842 ACT domain N646_1641 PF00696 Amino acid kinase family N646_1642 PF01411 tRNA synthetases class II (A) N646_1642 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain N646_1642 PF02272 DHHA1 domain N646_1643 PF02631 RecX family N646_1644 PF00154 recA bacterial DNA recombination protein N646_1645 PF02464 Competence-damaged protein N646_1646 PF05192 MutS domain III N646_1646 PF00488 MutS domain V N646_1646 PF01624 MutS domain I N646_1646 PF05188 MutS domain II N646_1646 PF05190 MutS family domain IV N646_1647 PF04545 Sigma-70, region 4 N646_1647 PF04539 Sigma-70 region 3 N646_1647 PF04542 Sigma-70 region 2 N646_1647 PF00140 Sigma-70 factor, region 1.2 N646_1648 PF01551 Peptidase family M23 N646_1648 PF01476 LysM domain N646_1650 PF01975 Survival protein SurE N646_1651 PF01142 tRNA pseudouridine synthase D (TruD) N646_1652 PF02542 YgbB family N646_1653 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase N646_1654 PF04977 Septum formation initiator N646_1655 PF00113 Enolase, C-terminal TIM barrel domain N646_1655 PF03952 Enolase, N-terminal domain N646_1656 PF06418 CTP synthase N-terminus N646_1656 PF00117 Glutamine amidotransferase class-I N646_1657 PF03819 MazG nucleotide pyrophosphohydrolase domain N646_1658 PF13291 ACT domain N646_1658 PF04607 Region found in RelA / SpoT proteins N646_1658 PF02824 TGS domain N646_1659 PF01938 TRAM domain N646_1659 PF05958 tRNA (Uracil-5-)-methyltransferase N646_1660 PF00072 Response regulator receiver domain N646_1660 PF01627 Hpt domain N646_1660 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N646_1660 PF00512 His Kinase A (phospho-acceptor) domain N646_1660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1660 PF00672 HAMP domain N646_1661 PF01648 4'-phosphopantetheinyl transferase superfamily N646_1662 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ N646_1663 PF11967 Recombination protein O N terminal N646_1663 PF02565 Recombination protein O C terminal N646_1664 PF01926 50S ribosome-binding GTPase N646_1664 PF07650 KH domain N646_1665 PF14622 Ribonuclease-III-like N646_1665 PF00035 Double-stranded RNA binding motif N646_1666 PF10502 Signal peptidase, peptidase S26 N646_1667 PF03144 Elongation factor Tu domain 2 N646_1667 PF00679 Elongation factor G C-terminus N646_1667 PF06421 GTP-binding protein LepA C-terminus N646_1667 PF00009 Elongation factor Tu GTP binding domain N646_1669 PF03888 MucB/RseB N-terminal domain N646_1669 PF17188 MucB/RseB C-terminal domain N646_1670 PF03873 Anti sigma-E protein RseA, C-terminal domain N646_1670 PF03872 Anti sigma-E protein RseA, N-terminal domain N646_1671 PF08281 Sigma-70, region 4 N646_1671 PF04542 Sigma-70 region 2 N646_1672 PF02910 Fumarate reductase flavoprotein C-term N646_1672 PF00890 FAD binding domain N646_1674 PF03937 Flavinator of succinate dehydrogenase N646_1677 PF01494 FAD binding domain N646_1678 PF01494 FAD binding domain N646_1679 PF03695 Uncharacterised protein family (UPF0149) N646_1680 PF05164 Cell division protein ZapA N646_1681 PF01812 5-formyltetrahydrofolate cyclo-ligase family N646_1682 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) N646_1683 PF01842 ACT domain N646_1683 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N646_1683 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N646_1684 PF04402 Protein of unknown function (DUF541) N646_1685 PF03466 LysR substrate binding domain N646_1685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1686 PF01810 LysE type translocator N646_1688 PF00924 Mechanosensitive ion channel N646_1688 PF05552 Conserved TM helix N646_1689 PF01116 Fructose-bisphosphate aldolase class-II N646_1690 PF00162 Phosphoglycerate kinase N646_1691 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N646_1691 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N646_1692 PF00593 TonB dependent receptor N646_1692 PF07715 TonB-dependent Receptor Plug Domain N646_1693 PF03466 LysR substrate binding domain N646_1693 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1694 PF02780 Transketolase, C-terminal domain N646_1694 PF02779 Transketolase, pyrimidine binding domain N646_1694 PF00456 Transketolase, thiamine diphosphate binding domain N646_1695 PF02772 S-adenosylmethionine synthetase, central domain N646_1695 PF00438 S-adenosylmethionine synthetase, N-terminal domain N646_1695 PF02773 S-adenosylmethionine synthetase, C-terminal domain N646_1697 PF10263 SprT-like family N646_1697 PF17283 SprT-like zinc ribbon domain N646_1699 PF04231 Endonuclease I N646_1700 PF04452 RNA methyltransferase N646_1701 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain N646_1701 PF02951 Prokaryotic glutathione synthetase, N-terminal domain N646_1702 PF02622 Uncharacterized ACR, COG1678 N646_1703 PF03652 Holliday junction resolvase N646_1704 PF00437 Type II/IV secretion system protein N646_1705 PF00437 Type II/IV secretion system protein N646_1706 PF01168 Alanine racemase, N-terminal domain N646_1707 PF03807 NADP oxidoreductase coenzyme F420-dependent N646_1707 PF14748 Pyrroline-5-carboxylate reductase dimerisation N646_1708 PF02325 YGGT family N646_1709 PF02594 Uncharacterised ACR, YggU family COG1872 N646_1711 PF01725 Ham1 family N646_1712 PF04055 Radical SAM superfamily N646_1712 PF06969 HemN C-terminal domain N646_1713 PF04960 Glutaminase N646_1714 PF02086 D12 class N6 adenine-specific DNA methyltransferase N646_1715 PF02390 Putative methyltransferase N646_1716 PF14815 NUDIX domain N646_1716 PF00730 HhH-GPD superfamily base excision DNA repair protein N646_1716 PF00633 Helix-hairpin-helix motif N646_1717 PF04362 Bacterial Fe(2+) trafficking N646_1718 PF01464 Transglycosylase SLT domain N646_1718 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain N646_1719 PF17200 Single Cache domain 2 N646_1719 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_1719 PF00672 HAMP domain N646_1721 PF00171 Aldehyde dehydrogenase family N646_1726 PF04794 YdjC-like protein N646_1727 PF11975 Family 4 glycosyl hydrolase C-terminal domain N646_1727 PF02056 Family 4 glycosyl hydrolase N646_1728 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit N646_1729 PF02378 Phosphotransferase system, EIIC N646_1731 PF01522 Polysaccharide deacetylase N646_1733 PF10011 Predicted membrane protein (DUF2254) N646_1735 PF03739 Lipopolysaccharide export system permease LptF/LptG N646_1736 PF03739 Lipopolysaccharide export system permease LptF/LptG N646_1737 PF02789 Cytosol aminopeptidase family, N-terminal domain N646_1737 PF00883 Cytosol aminopeptidase family, catalytic domain N646_1738 PF04364 DNA polymerase III chi subunit, HolC N646_1739 PF00133 tRNA synthetases class I (I, L, M and V) N646_1739 PF10458 Valyl tRNA synthetase tRNA binding arm N646_1739 PF08264 Anticodon-binding domain of tRNA N646_1741 PF00583 Acetyltransferase (GNAT) family N646_1743 PF06877 Regulator of ribonuclease activity B N646_1745 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N646_1745 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N646_1746 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain N646_1746 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain N646_1747 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain N646_1747 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain N646_1748 PF01042 Endoribonuclease L-PSP N646_1749 PF01553 Acyltransferase N646_1750 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N646_1751 PF01722 BolA-like protein N646_1753 PF05494 MlaC protein N646_1754 PF02470 MlaD protein N646_1755 PF02405 Permease MlaE N646_1756 PF00005 ABC transporter N646_1757 PF01699 Sodium/calcium exchanger protein N646_1758 PF00571 CBS domain N646_1758 PF01380 SIS domain N646_1760 PF03968 OstA-like protein N646_1761 PF12399 Branched-chain amino acid ATP-binding cassette transporter N646_1761 PF00005 ABC transporter N646_1762 PF04552 Sigma-54, DNA binding domain N646_1762 PF04963 Sigma-54 factor, core binding domain N646_1762 PF00309 Sigma-54 factor, Activator interacting domain (AID) N646_1763 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein N646_1764 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N646_1765 PF03668 P-loop ATPase protein family N646_1766 PF00381 PTS HPr component phosphorylation site N646_1767 PF03448 MgtE intracellular N domain N646_1767 PF01769 Divalent cation transporter N646_1767 PF00571 CBS domain N646_1768 PF01523 Putative modulator of DNA gyrase N646_1769 PF04751 Protein of unknown function (DUF615) N646_1770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N646_1770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N646_1771 PF00849 RNA pseudouridylate synthase N646_1773 PF12137 RNA polymerase recycling family C-terminal N646_1773 PF00176 SNF2 family N-terminal domain N646_1773 PF18337 RapA N-terminal Tudor like domain N646_1773 PF00271 Helicase conserved C-terminal domain N646_1773 PF18339 RapA N-terminal Tudor like domain 1 N646_1774 PF02562 PhoH-like protein N646_1774 PF13638 PIN domain N646_1775 PF01523 Putative modulator of DNA gyrase N646_1776 PF00795 Carbon-nitrogen hydrolase N646_1777 PF13502 AsmA-like C-terminal region N646_1777 PF13116 Protein of unknown function N646_1778 PF10150 Ribonuclease E/G family N646_1778 PF00575 S1 RNA binding domain N646_1779 PF02545 Maf-like protein N646_1780 PF04093 rod shape-determining protein MreD N646_1781 PF04085 rod shape-determining protein MreC N646_1788 PF07963 Prokaryotic N-terminal methylation motif N646_1788 PF00114 Pilin (bacterial filament) N646_1791 PF00482 Type II secretion system (T2SS), protein F N646_1792 PF00437 Type II/IV secretion system protein N646_1794 PF01471 Putative peptidoglycan binding domain N646_1794 PF13401 AAA domain N646_1795 PF03958 Bacterial type II/III secretion system short domain N646_1795 PF00263 Bacterial type II and III secretion system protein N646_1799 PF00563 EAL domain N646_1799 PF17157 Gammaproteobacterial periplasmic sensor domain N646_1799 PF00990 Diguanylate cyclase, GGDEF domain N646_1800 PF00436 Single-strand binding protein family N646_1801 PF00196 Bacterial regulatory proteins, luxR family N646_1802 PF00483 Nucleotidyl transferase N646_1803 PF17760 UvrA interaction domain N646_1803 PF17755 UvrA DNA-binding domain N646_1803 PF00005 ABC transporter N646_1805 PF00266 Aminotransferase class-V N646_1807 PF00696 Amino acid kinase family N646_1807 PF01842 ACT domain N646_1808 PF02965 Vitamin B12 dependent methionine synthase, activation domain N646_1808 PF00809 Pterin binding enzyme N646_1808 PF02607 B12 binding domain N646_1808 PF02310 B12 binding domain N646_1808 PF02574 Homocysteine S-methyltransferase N646_1809 PF00999 Sodium/hydrogen exchanger family N646_1816 PF01507 Phosphoadenosine phosphosulfate reductase family N646_1817 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N646_1817 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N646_1818 PF00175 Oxidoreductase NAD-binding domain N646_1818 PF00258 Flavodoxin N646_1818 PF00667 FAD binding domain N646_1822 PF01207 Dihydrouridine synthase (Dus) N646_1824 PF01475 Ferric uptake regulator family N646_1826 PF00342 Phosphoglucose isomerase N646_1827 PF01894 Uncharacterised protein family UPF0047 N646_1828 PF00842 Alanine racemase, C-terminal domain N646_1828 PF01168 Alanine racemase, N-terminal domain N646_1829 PF00772 DnaB-like helicase N terminal domain N646_1829 PF03796 DnaB-like helicase C terminal domain N646_1831 PF03948 Ribosomal protein L9, C-terminal domain N646_1831 PF01281 Ribosomal protein L9, N-terminal domain N646_1832 PF01084 Ribosomal protein S18 N646_1834 PF01250 Ribosomal protein S6 N646_1835 PF00834 Ribulose-phosphate 3 epimerase family N646_1836 PF02086 D12 class N6 adenine-specific DNA methyltransferase N646_1838 PF01761 3-dehydroquinate synthase N646_1839 PF01202 Shikimate kinase N646_1840 PF11741 AMIN domain N646_1840 PF03958 Bacterial type II/III secretion system short domain N646_1840 PF07660 Secretin and TonB N terminus short domain N646_1840 PF00263 Bacterial type II and III secretion system protein N646_1845 PF00905 Penicillin binding protein transpeptidase domain N646_1845 PF17092 Penicillin-binding protein OB-like domain N646_1845 PF00912 Transglycosylase N646_1846 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_1846 PF03466 LysR substrate binding domain N646_1847 PF08534 Redoxin N646_1847 PF00462 Glutaredoxin N646_1848 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N646_1848 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_1851 PF00206 Lyase N646_1851 PF00583 Acetyltransferase (GNAT) family N646_1851 PF14698 Argininosuccinate lyase C-terminal N646_1852 PF00764 Arginosuccinate synthase N646_1853 PF00696 Amino acid kinase family N646_1854 PF01118 Semialdehyde dehydrogenase, NAD binding domain N646_1854 PF02774 Semialdehyde dehydrogenase, dimerisation domain N646_1855 PF07687 Peptidase dimerisation domain N646_1855 PF01546 Peptidase family M20/M25/M40 N646_1856 PF00311 Phosphoenolpyruvate carboxylase N646_1858 PF02219 Methylenetetrahydrofolate reductase N646_1859 PF03447 Homoserine dehydrogenase, NAD binding domain N646_1859 PF00742 Homoserine dehydrogenase N646_1859 PF00696 Amino acid kinase family N646_1860 PF01053 Cys/Met metabolism PLP-dependent enzyme N646_1862 PF00390 Malic enzyme, N-terminal domain N646_1862 PF03949 Malic enzyme, NAD binding domain N646_1863 PF00210 Ferritin-like domain N646_1864 PF00009 Elongation factor Tu GTP binding domain N646_1864 PF03143 Elongation factor Tu C-terminal domain N646_1864 PF03144 Elongation factor Tu domain 2 N646_1865 PF00679 Elongation factor G C-terminus N646_1865 PF00009 Elongation factor Tu GTP binding domain N646_1865 PF14492 Elongation Factor G, domain II N646_1865 PF03764 Elongation factor G, domain IV N646_1865 PF03144 Elongation factor Tu domain 2 N646_1866 PF00177 Ribosomal protein S7p/S5e N646_1867 PF00164 Ribosomal protein S12/S23 N646_1868 PF04077 DsrH like protein N646_1869 PF02635 DsrE/DsrF-like family N646_1870 PF02635 DsrE/DsrF-like family N646_1871 PF08348 YheO-like PAS domain N646_1871 PF13309 HTH domain N646_1872 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase N646_1872 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N646_1874 PF04102 SlyX N646_1875 PF01112 Asparaginase N646_1876 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N646_1878 PF02254 TrkA-N domain N646_1878 PF00999 Sodium/hydrogen exchanger family N646_1879 PF02525 Flavodoxin-like fold N646_1880 PF12848 ABC transporter N646_1880 PF00005 ABC transporter N646_1882 PF00561 alpha/beta hydrolase fold N646_1883 PF06794 Uncharacterised protein family (UPF0270) N646_1884 PF00485 Phosphoribulokinase / Uridine kinase family N646_1885 PF13545 Crp-like helix-turn-helix domain N646_1885 PF00027 Cyclic nucleotide-binding domain N646_1887 PF00171 Aldehyde dehydrogenase family N646_1888 PF04958 Arginine N-succinyltransferase beta subunit N646_1889 PF00202 Aminotransferase class-III N646_1890 PF00117 Glutamine amidotransferase class-I N646_1894 PF00579 tRNA synthetases class I (W and Y) N646_1895 PF13419 Haloacid dehalogenase-like hydrolase N646_1896 PF08032 RNA 2'-O ribose methyltransferase substrate binding N646_1896 PF00588 SpoU rRNA Methylase family N646_1897 PF08461 Ribonuclease R winged-helix domain N646_1897 PF08206 Ribonuclease B OB domain N646_1897 PF00773 RNB domain N646_1897 PF00575 S1 RNA binding domain N646_1897 PF17876 Cold shock domain N646_1898 PF02082 Transcriptional regulator N646_1899 PF00042 Globin N646_1899 PF00175 Oxidoreductase NAD-binding domain N646_1899 PF00970 Oxidoreductase FAD-binding domain N646_1900 PF08238 Sel1 repeat N646_1901 PF00709 Adenylosuccinate synthetase N646_1902 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) N646_1903 PF01145 SPFH domain / Band 7 family N646_1904 PF01145 SPFH domain / Band 7 family N646_1904 PF12221 Bacterial membrane protein N terminal N646_1905 PF16360 GTP-binding GTPase Middle Region N646_1905 PF13167 GTP-binding GTPase N-terminal N646_1905 PF01926 50S ribosome-binding GTPase N646_1906 PF17209 Hfq protein N646_1908 PF01119 DNA mismatch repair protein, C-terminal domain N646_1908 PF08676 MutL C terminal dimerisation domain N646_1910 PF01520 N-acetylmuramoyl-L-alanine amidase N646_1911 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE N646_1913 PF08331 Domain of unknown function (DUF1730) N646_1914 PF00929 Exonuclease N646_1915 PF03193 RsgA GTPase N646_1916 PF02666 Phosphatidylserine decarboxylase N646_1917 PF02080 TrkA-C domain N646_1917 PF03600 Citrate transporter N646_1919 PF01676 Metalloenzyme superfamily N646_1919 PF06415 BPG-independent PGAM N-terminus (iPGM_N) N646_1920 PF00581 Rhodanese-like domain N646_1921 PF02556 Preprotein translocase subunit SecB N646_1922 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus N646_1922 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus N646_1923 PF06426 Serine acetyltransferase, N-terminal N646_1923 PF00132 Bacterial transferase hexapeptide (six repeats) N646_1924 PF01551 Peptidase family M23 N646_1926 PF08360 QacR-like protein, C-terminal region N646_1926 PF00440 Bacterial regulatory proteins, tetR family N646_1928 PF00152 tRNA synthetases class II (D, K and N) N646_1929 PF00890 FAD binding domain N646_1929 PF02910 Fumarate reductase flavoprotein C-term N646_1930 PF13183 4Fe-4S dicluster domain N646_1930 PF13085 2Fe-2S iron-sulfur cluster binding domain N646_1931 PF02300 Fumarate reductase subunit C N646_1932 PF02313 Fumarate reductase subunit D N646_1934 PF09285 Elongation factor P, C-terminal N646_1934 PF08207 Elongation factor P (EF-P) KOW-like domain N646_1934 PF01132 Elongation factor P (EF-P) OB domain N646_1935 PF04055 Radical SAM superfamily N646_1936 PF02308 MgtC family N646_1939 PF00118 TCP-1/cpn60 chaperonin family N646_1940 PF00166 Chaperonin 10 Kd subunit N646_1941 PF01554 MatE N646_1942 PF01797 Transposase IS200 like N646_1943 PF00365 Phosphofructokinase N646_1944 PF01545 Cation efflux family N646_1944 PF16916 Dimerisation domain of Zinc Transporter N646_1945 PF07813 LTXXQ motif family protein N646_1946 PF00072 Response regulator receiver domain N646_1946 PF00486 Transcriptional regulatory protein, C terminal N646_1947 PF16527 Two-component sensor protein CpxA, periplasmic domain N646_1947 PF00672 HAMP domain N646_1947 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1947 PF00512 His Kinase A (phospho-acceptor) domain N646_1948 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain N646_1948 PF02777 Iron/manganese superoxide dismutases, C-terminal domain N646_1949 PF00588 SpoU rRNA Methylase family N646_1950 PF04186 FxsA cytoplasmic membrane protein N646_1951 PF10415 Fumarase C C-terminus N646_1951 PF00206 Lyase N646_1952 PF03605 Anaerobic c4-dicarboxylate membrane transporter N646_1953 PF02683 Cytochrome C biogenesis protein transmembrane region N646_1953 PF11412 Disulphide bond corrector protein DsbC N646_1954 PF00072 Response regulator receiver domain N646_1954 PF00196 Bacterial regulatory proteins, luxR family N646_1955 PF00999 Sodium/hydrogen exchanger family N646_1955 PF03471 Transporter associated domain N646_1955 PF02080 TrkA-C domain N646_1957 PF00474 Sodium:solute symporter family N646_1960 PF10415 Fumarase C C-terminus N646_1960 PF00206 Lyase N646_1961 PF00072 Response regulator receiver domain N646_1961 PF09308 LuxQ, periplasmic N646_1961 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_1961 PF00512 His Kinase A (phospho-acceptor) domain N646_1962 PF12832 MFS_1 like family N646_1965 PF13193 AMP-binding enzyme C-terminal domain N646_1965 PF16177 Acetyl-coenzyme A synthetase N-terminus N646_1965 PF00501 AMP-binding enzyme N646_1966 PF01220 Dehydroquinase class II N646_1967 PF00364 Biotin-requiring enzyme N646_1968 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N646_1968 PF00289 Biotin carboxylase, N-terminal domain N646_1968 PF02785 Biotin carboxylase C-terminal domain N646_1970 PF01207 Dihydrouridine synthase (Dus) N646_1971 PF02954 Bacterial regulatory protein, Fis family N646_1973 PF00005 ABC transporter N646_1973 PF12848 ABC transporter N646_1979 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain N646_1979 PF01276 Orn/Lys/Arg decarboxylase, major domain N646_1979 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain N646_1980 PF13520 Amino acid permease N646_1981 PF18500 CadC C-terminal domain 1 N646_1981 PF00486 Transcriptional regulatory protein, C terminal N646_1982 PF13411 MerR HTH family regulatory protein N646_1984 PF02142 MGS-like domain N646_1984 PF01808 AICARFT/IMPCHase bienzyme N646_1985 PF02844 Phosphoribosylglycinamide synthetase, N domain N646_1985 PF02843 Phosphoribosylglycinamide synthetase, C domain N646_1985 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain N646_1987 PF00216 Bacterial DNA-binding protein N646_1988 PF00571 CBS domain N646_1988 PF01595 Cyclin M transmembrane N-terminal domain N646_1989 PF04222 Protein of unknown function (DUF416) N646_1990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N646_1991 PF03167 Uracil DNA glycosylase superfamily N646_1992 PF01208 Uroporphyrinogen decarboxylase (URO-D) N646_1993 PF00293 NUDIX domain N646_1993 PF09297 NADH pyrophosphatase zinc ribbon domain N646_1994 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ N646_1995 PF04998 RNA polymerase Rpb1, domain 5 N646_1995 PF05000 RNA polymerase Rpb1, domain 4 N646_1995 PF00623 RNA polymerase Rpb1, domain 2 N646_1995 PF04997 RNA polymerase Rpb1, domain 1 N646_1995 PF04983 RNA polymerase Rpb1, domain 3 N646_1996 PF04563 RNA polymerase beta subunit N646_1996 PF04561 RNA polymerase Rpb2, domain 2 N646_1996 PF04565 RNA polymerase Rpb2, domain 3 N646_1996 PF00562 RNA polymerase Rpb2, domain 6 N646_1996 PF04560 RNA polymerase Rpb2, domain 7 N646_1996 PF10385 RNA polymerase beta subunit external 1 domain N646_1997 PF16320 Ribosomal protein L7/L12 dimerisation domain N646_1997 PF00542 Ribosomal protein L7/L12 C-terminal domain N646_1998 PF00466 Ribosomal protein L10 N646_1999 PF00687 Ribosomal protein L1p/L10e family N646_2000 PF03946 Ribosomal protein L11, N-terminal domain N646_2000 PF00298 Ribosomal protein L11, RNA binding domain N646_2001 PF00467 KOW motif N646_2001 PF02357 Transcription termination factor nusG N646_2002 PF00584 SecE/Sec61-gamma subunits of protein translocation complex N646_2003 PF00009 Elongation factor Tu GTP binding domain N646_2003 PF03144 Elongation factor Tu domain 2 N646_2003 PF03143 Elongation factor Tu C-terminal domain N646_2004 PF00485 Phosphoribulokinase / Uridine kinase family N646_2005 PF02237 Biotin protein ligase C terminal domain N646_2005 PF03099 Biotin/lipoate A/B protein ligase family N646_2005 PF08279 HTH domain N646_2006 PF01565 FAD binding domain N646_2006 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N646_2008 PF13091 PLD-like domain N646_2013 PF01177 Asp/Glu/Hydantoin racemase N646_2015 PF07715 TonB-dependent Receptor Plug Domain N646_2015 PF00593 TonB dependent receptor N646_2016 PF05958 tRNA (Uracil-5-)-methyltransferase N646_2024 PF06803 Protein of unknown function (DUF1232) N646_2028 PF04002 RadC-like JAB domain N646_2031 PF12161 HsdM N-terminal domain N646_2031 PF02384 N-6 DNA Methylase N646_2032 PF01420 Type I restriction modification DNA specificity domain N646_2035 PF12008 Type I restriction and modification enzyme - subunit R C terminal N646_2035 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) N646_2035 PF18766 SWI2/SNF2 ATPase N646_2038 PF00440 Bacterial regulatory proteins, tetR family N646_2039 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N646_2039 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_2040 PF01554 MatE N646_2041 PF04072 Leucine carboxyl methyltransferase N646_2042 PF01726 LexA DNA binding domain N646_2042 PF00717 Peptidase S24-like N646_2043 PF01553 Acyltransferase N646_2044 PF01040 UbiA prenyltransferase family N646_2045 PF04345 Chorismate lyase N646_2046 PF03748 Flagellar basal body-associated protein FliL N646_2047 PF01694 Rhomboid family N646_2047 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease N646_2048 PF00581 Rhodanese-like domain N646_2049 PF04542 Sigma-70 region 2 N646_2049 PF00140 Sigma-70 factor, region 1.2 N646_2049 PF04545 Sigma-70, region 4 N646_2050 PF18075 FtsX extracellular domain N646_2051 PF00005 ABC transporter N646_2052 PF00448 SRP54-type protein, GTPase domain N646_2052 PF02881 SRP54-type protein, helical bundle domain N646_2055 PF01914 MarC family integral membrane protein N646_2061 PF10694 Protein of unknown function (DUF2500) N646_2065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N646_2065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N646_2066 PF01022 Bacterial regulatory protein, arsR family N646_2067 PF00563 EAL domain N646_2067 PF08668 HDOD domain N646_2068 PF01810 LysE type translocator N646_2069 PF12146 Serine aminopeptidase, S33 N646_2075 PF00990 Diguanylate cyclase, GGDEF domain N646_2075 PF00563 EAL domain N646_2075 PF08495 FIST N domain N646_2075 PF10442 FIST C domain N646_2076 PF13419 Haloacid dehalogenase-like hydrolase N646_2077 PF02899 Phage integrase, N-terminal SAM-like domain N646_2077 PF00589 Phage integrase family N646_2079 PF01678 Diaminopimelate epimerase N646_2080 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N646_2080 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N646_2082 PF01491 Frataxin-like domain N646_2083 PF01295 Adenylate cyclase, class-I N646_2083 PF12633 Adenylate cyclase NT domain N646_2084 PF03900 Porphobilinogen deaminase, C-terminal domain N646_2084 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain N646_2085 PF02602 Uroporphyrinogen-III synthase HemD N646_2086 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase N646_2087 PF07219 HemY protein N-terminus N646_2091 PF00175 Oxidoreductase NAD-binding domain N646_2092 PF00111 2Fe-2S iron-sulfur cluster binding domain N646_2093 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase N646_2095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N646_2095 PF07498 Rho termination factor, N-terminal domain N646_2095 PF07497 Rho termination factor, RNA-binding domain N646_2096 PF00085 Thioredoxin N646_2097 PF00270 DEAD/DEAH box helicase N646_2097 PF00271 Helicase conserved C-terminal domain N646_2098 PF02541 Ppx/GppA phosphatase family N646_2100 PF02592 Putative vitamin uptake transporter N646_2102 PF00570 HRDC domain N646_2102 PF00270 DEAD/DEAH box helicase N646_2102 PF00271 Helicase conserved C-terminal domain N646_2102 PF16124 RecQ zinc-binding N646_2102 PF09382 RQC domain N646_2103 PF00892 EamA-like transporter family N646_2105 PF01810 LysE type translocator N646_2108 PF13361 UvrD-like helicase C-terminal domain N646_2108 PF00580 UvrD/REP helicase N-terminal domain N646_2110 PF05114 Protein of unknown function (DUF692) N646_2114 PF07690 Major Facilitator Superfamily N646_2115 PF03466 LysR substrate binding domain N646_2115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2116 PF01321 Creatinase/Prolidase N-terminal domain N646_2116 PF01321 Creatinase/Prolidase N-terminal domain N646_2116 PF00557 Metallopeptidase family M24 N646_2116 PF00557 Metallopeptidase family M24 N646_2117 PF04055 Radical SAM superfamily N646_2117 PF06968 Biotin and Thiamin Synthesis associated domain N646_2118 PF05690 Thiazole biosynthesis protein ThiG N646_2119 PF02597 ThiS family N646_2120 PF00899 ThiF family N646_2121 PF02581 Thiamine monophosphate synthase N646_2122 PF13667 ThiC-associated domain N646_2122 PF01964 Radical SAM ThiC family N646_2123 PF02537 CrcB-like protein, Camphor Resistance (CrcB) N646_2124 PF07731 Multicopper oxidase N646_2124 PF00394 Multicopper oxidase N646_2124 PF07732 Multicopper oxidase N646_2129 PF00132 Bacterial transferase hexapeptide (six repeats) N646_2130 PF07369 Protein of unknown function (DUF1488) N646_2131 PF08501 Shikimate dehydrogenase substrate binding domain N646_2131 PF01488 Shikimate / quinate 5-dehydrogenase N646_2131 PF18317 Shikimate 5'-dehydrogenase C-terminal domain N646_2132 PF01218 Coproporphyrinogen III oxidase N646_2133 PF01300 Telomere recombination N646_2134 PF00731 AIR carboxylase N646_2135 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain N646_2135 PF02222 ATP-grasp domain N646_2136 PF01396 Topoisomerase DNA binding C4 zinc finger N646_2137 PF04361 Protein of unknown function (DUF494) N646_2138 PF02481 DNA recombination-mediator protein A N646_2138 PF17782 DprA winged helix domain N646_2140 PF01327 Polypeptide deformylase N646_2141 PF00551 Formyl transferase N646_2141 PF02911 Formyl transferase, C-terminal domain N646_2142 PF01189 16S rRNA methyltransferase RsmB/F N646_2142 PF01029 NusB family N646_2143 PF02080 TrkA-C domain N646_2143 PF02254 TrkA-N domain N646_2144 PF02386 Cation transport protein N646_2146 PF03006 Haemolysin-III related N646_2147 PF07070 SpoOM protein N646_2150 PF06288 Protein of unknown function (DUF1040) N646_2151 PF12801 4Fe-4S binding domain N646_2151 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase N646_2151 PF13746 4Fe-4S dicluster domain N646_2152 PF01636 Phosphotransferase enzyme family N646_2153 PF01323 DSBA-like thioredoxin domain N646_2155 PF01553 Acyltransferase N646_2157 PF13335 Magnesium chelatase, subunit ChlI C-terminal N646_2157 PF01078 Magnesium chelatase, subunit ChlI N646_2158 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N646_2158 PF00205 Thiamine pyrophosphate enzyme, central domain N646_2158 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N646_2160 PF01063 Amino-transferase class IV N646_2161 PF00920 Dehydratase family N646_2162 PF00291 Pyridoxal-phosphate dependent enzyme N646_2162 PF00585 C-terminal regulatory domain of Threonine dehydratase N646_2163 PF03466 LysR substrate binding domain N646_2163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2164 PF07690 Major Facilitator Superfamily N646_2165 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_2166 PF00528 Binding-protein-dependent transport system inner membrane component N646_2167 PF12804 MobA-like NTP transferase domain N646_2167 PF00132 Bacterial transferase hexapeptide (six repeats) N646_2168 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain N646_2168 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain N646_2169 PF02874 ATP synthase alpha/beta family, beta-barrel domain N646_2169 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N646_2170 PF00231 ATP synthase N646_2171 PF02874 ATP synthase alpha/beta family, beta-barrel domain N646_2171 PF00306 ATP synthase alpha/beta chain, C terminal domain N646_2171 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N646_2172 PF00213 ATP synthase delta (OSCP) subunit N646_2173 PF00430 ATP synthase B/B' CF(0) N646_2174 PF00137 ATP synthase subunit C N646_2175 PF00119 ATP synthase A chain N646_2176 PF03899 ATP synthase I chain N646_2177 PF17762 HTH domain found in ParB protein N646_2177 PF02195 ParB-like nuclease domain N646_2178 PF13614 AAA domain N646_2179 PF02527 rRNA small subunit methyltransferase G N646_2180 PF01134 Glucose inhibited division protein A N646_2180 PF13932 GidA associated domain N646_2181 PF00258 Flavodoxin N646_2182 PF01926 50S ribosome-binding GTPase N646_2182 PF12631 MnmE helical domain N646_2182 PF10396 GTP-binding protein TrmE N-terminus N646_2183 PF14849 YidC periplasmic domain N646_2183 PF02096 60Kd inner membrane protein N646_2184 PF00825 Ribonuclease P N646_2185 PF00468 Ribosomal protein L34 N646_2186 PF00005 ABC transporter N646_2187 PF00528 Binding-protein-dependent transport system inner membrane component N646_2188 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_2189 PF00308 Bacterial dnaA protein N646_2189 PF11638 DnaA N-terminal domain N646_2189 PF08299 Bacterial dnaA protein helix-turn-helix N646_2190 PF00712 DNA polymerase III beta subunit, N-terminal domain N646_2190 PF02767 DNA polymerase III beta subunit, central domain N646_2190 PF02768 DNA polymerase III beta subunit, C-terminal domain N646_2191 PF02463 RecF/RecN/SMC N terminal domain N646_2192 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_2192 PF00986 DNA gyrase B subunit, carboxyl terminus N646_2192 PF18053 DNA gyrase B subunit insert domain N646_2192 PF00204 DNA gyrase B N646_2192 PF01751 Toprim domain N646_2193 PF01797 Transposase IS200 like N646_2196 PF00011 Hsp20/alpha crystallin family N646_2197 PF00155 Aminotransferase class I and II N646_2198 PF00128 Alpha amylase, catalytic domain N646_2199 PF05746 DALR anticodon binding domain N646_2199 PF02092 Glycyl-tRNA synthetase beta subunit N646_2200 PF02091 Glycyl-tRNA synthetase alpha subunit N646_2202 PF01169 Uncharacterized protein family UPF0016 N646_2204 PF01206 Sulfurtransferase TusA N646_2206 PF03466 LysR substrate binding domain N646_2206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2207 PF08240 Alcohol dehydrogenase GroES-like domain N646_2207 PF00107 Zinc-binding dehydrogenase N646_2209 PF02803 Thiolase, C-terminal domain N646_2209 PF00108 Thiolase, N-terminal domain N646_2210 PF00378 Enoyl-CoA hydratase/isomerase N646_2210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain N646_2210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain N646_2211 PF09186 Domain of unknown function (DUF1949) N646_2211 PF01205 Uncharacterized protein family UPF0029 N646_2212 PF02386 Cation transport protein N646_2213 PF12724 Flavodoxin domain N646_2218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2218 PF03466 LysR substrate binding domain N646_2219 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain N646_2219 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain N646_2220 PF04380 Membrane fusogenic activity N646_2221 PF00873 AcrB/AcrD/AcrF family N646_2222 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_2223 PF00440 Bacterial regulatory proteins, tetR family N646_2223 PF16295 Tetracyclin repressor-like, C-terminal domain N646_2224 PF00580 UvrD/REP helicase N-terminal domain N646_2224 PF13361 UvrD-like helicase C-terminal domain N646_2225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III N646_2226 PF13419 Haloacid dehalogenase-like hydrolase N646_2227 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_2227 PF00005 ABC transporter N646_2228 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_2230 PF12911 N-terminal TM domain of oligopeptide transport permease C N646_2230 PF00528 Binding-protein-dependent transport system inner membrane component N646_2237 PF00069 Protein kinase domain N646_2239 PF00356 Bacterial regulatory proteins, lacI family N646_2239 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N646_2240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2240 PF03466 LysR substrate binding domain N646_2241 PF00893 Small Multidrug Resistance protein N646_2242 PF00893 Small Multidrug Resistance protein N646_2243 PF00920 Dehydratase family N646_2244 PF01202 Shikimate kinase N646_2245 PF02447 GntP family permease N646_2246 PF01081 KDPG and KHG aldolase N646_2247 PF01048 Phosphorylase superfamily N646_2248 PF03466 LysR substrate binding domain N646_2248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2256 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_2256 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N646_2257 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ N646_2258 PF01432 Peptidase family M3 N646_2259 PF01037 Lrp/AsnC ligand binding domain N646_2260 PF00990 Diguanylate cyclase, GGDEF domain N646_2260 PF00563 EAL domain N646_2260 PF08448 PAS fold N646_2261 PF04445 Putative SAM-dependent methyltransferase N646_2263 PF00892 EamA-like transporter family N646_2264 PF00582 Universal stress protein family N646_2265 PF00210 Ferritin-like domain N646_2266 PF10625 Universal stress protein B (UspB) N646_2268 PF00158 Sigma-54 interaction domain N646_2268 PF02954 Bacterial regulatory protein, Fis family N646_2268 PF01590 GAF domain N646_2273 PF00781 Diacylglycerol kinase catalytic domain N646_2280 PF01594 AI-2E family transporter N646_2281 PF03707 Bacterial signalling protein N terminal repeat N646_2281 PF00990 Diguanylate cyclase, GGDEF domain N646_2281 PF00563 EAL domain N646_2283 PF02646 RmuC family N646_2284 PF01209 ubiE/COQ5 methyltransferase family N646_2285 PF02036 SCP-2 sterol transfer family N646_2286 PF03109 ABC1 family N646_2287 PF02416 mttA/Hcf106 family N646_2288 PF02416 mttA/Hcf106 family N646_2289 PF00902 Sec-independent protein translocase protein (TatC) N646_2290 PF13333 Integrase core domain N646_2290 PF00665 Integrase core domain N646_2290 PF13276 HTH-like domain N646_2293 PF01026 TatD related DNase N646_2294 PF00490 Delta-aminolevulinic acid dehydratase N646_2295 PF00583 Acetyltransferase (GNAT) family N646_2296 PF01612 3'-5' exonuclease N646_2296 PF01367 5'-3' exonuclease, C-terminal SAM fold N646_2296 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N646_2296 PF00476 DNA polymerase family A N646_2297 PF01926 50S ribosome-binding GTPase N646_2298 PF00034 Cytochrome c N646_2300 PF04220 Der GTPase activator (YihI) N646_2301 PF10675 Protein of unknown function (DUF2489) N646_2302 PF04055 Radical SAM superfamily N646_2302 PF06969 HemN C-terminal domain N646_2303 PF00962 Adenosine/AMP deaminase N646_2304 PF00563 EAL domain N646_2304 PF00990 Diguanylate cyclase, GGDEF domain N646_2304 PF03707 Bacterial signalling protein N terminal repeat N646_2305 PF00158 Sigma-54 interaction domain N646_2305 PF00072 Response regulator receiver domain N646_2305 PF02954 Bacterial regulatory protein, Fis family N646_2306 PF00989 PAS fold N646_2306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_2306 PF00512 His Kinase A (phospho-acceptor) domain N646_2308 PF00120 Glutamine synthetase, catalytic domain N646_2308 PF03951 Glutamine synthetase, beta-Grasp domain N646_2312 PF00308 Bacterial dnaA protein N646_2312 PF08299 Bacterial dnaA protein helix-turn-helix N646_2314 PF03631 Virulence factor BrkB N646_2315 PF02580 D-Tyr-tRNA(Tyr) deacylase N646_2316 PF09500 Putative thioesterase (yiiD_Cterm) N646_2316 PF00583 Acetyltransferase (GNAT) family N646_2318 PF01293 Phosphoenolpyruvate carboxykinase N646_2319 PF01430 Hsp33 protein N646_2320 PF01479 S4 domain N646_2321 PF11356 Type II secretion system protein C N646_2322 PF03958 Bacterial type II/III secretion system short domain N646_2322 PF00263 Bacterial type II and III secretion system protein N646_2323 PF00437 Type II/IV secretion system protein N646_2324 PF00482 Type II secretion system (T2SS), protein F N646_2325 PF07963 Prokaryotic N-terminal methylation motif N646_2325 PF08334 Type II secretion system (T2SS), protein G N646_2326 PF12019 Type II transport protein GspH N646_2327 PF02501 Type II secretion system (T2SS), protein I N646_2327 PF07963 Prokaryotic N-terminal methylation motif N646_2328 PF11612 Type II secretion system (T2SS), protein J N646_2328 PF07963 Prokaryotic N-terminal methylation motif N646_2329 PF03934 Type II secretion system (T2SS), protein K N646_2330 PF12693 GspL periplasmic domain N646_2330 PF05134 Type II secretion system (T2SS), protein L N646_2331 PF04612 Type II secretion system (T2SS), protein M N646_2332 PF01203 Type II secretion system (T2SS), protein N N646_2333 PF00459 Inositol monophosphatase family N646_2334 PF00293 NUDIX domain N646_2335 PF01106 NifU-like domain N646_2335 PF01521 Iron-sulphur cluster biosynthesis N646_2337 PF00156 Phosphoribosyl transferase domain N646_2338 PF00561 alpha/beta hydrolase fold N646_2340 PF17674 HHH domain N646_2340 PF16921 Tex protein YqgF-like domain N646_2340 PF09371 Tex-like protein N-terminal domain N646_2340 PF00575 S1 RNA binding domain N646_2342 PF03449 Transcription elongation factor, N-terminal N646_2342 PF01272 Transcription elongation factor, GreA/GreB, C-term N646_2344 PF00486 Transcriptional regulatory protein, C terminal N646_2344 PF00072 Response regulator receiver domain N646_2345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_2345 PF00672 HAMP domain N646_2345 PF00512 His Kinase A (phospho-acceptor) domain N646_2346 PF00860 Permease family N646_2347 PF00270 DEAD/DEAH box helicase N646_2347 PF00271 Helicase conserved C-terminal domain N646_2347 PF17191 RecG wedge domain N646_2348 PF12105 SpoU, rRNA methylase, C-terminal N646_2348 PF00588 SpoU rRNA Methylase family N646_2349 PF02824 TGS domain N646_2349 PF04607 Region found in RelA / SpoT proteins N646_2349 PF13291 ACT domain N646_2351 PF01192 RNA polymerase Rpb6 N646_2352 PF00625 Guanylate kinase N646_2355 PF02472 Biopolymer transport protein ExbD/TolR N646_2356 PF01618 MotA/TolQ/ExbB proton channel family N646_2359 PF00593 TonB dependent receptor N646_2359 PF07715 TonB-dependent Receptor Plug Domain N646_2360 PF00528 Binding-protein-dependent transport system inner membrane component N646_2361 PF12911 N-terminal TM domain of oligopeptide transport permease C N646_2361 PF00528 Binding-protein-dependent transport system inner membrane component N646_2362 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_2363 PF00005 ABC transporter N646_2363 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_2364 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_2364 PF00005 ABC transporter N646_2366 PF08340 Domain of unknown function (DUF1732) N646_2366 PF03755 YicC-like family, N-terminal region N646_2367 PF01138 3' exoribonuclease family, domain 1 N646_2367 PF03725 3' exoribonuclease family, domain 2 N646_2369 PF03279 Bacterial lipid A biosynthesis acyltransferase N646_2370 PF00440 Bacterial regulatory proteins, tetR family N646_2371 PF04127 DNA / pantothenate metabolism flavoprotein N646_2371 PF02441 Flavoprotein N646_2372 PF17200 Single Cache domain 2 N646_2372 PF00672 HAMP domain N646_2372 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_2373 PF04002 RadC-like JAB domain N646_2374 PF00830 Ribosomal L28 family N646_2375 PF00471 Ribosomal protein L33 N646_2377 PF06827 Zinc finger found in FPG and IleRS N646_2377 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain N646_2377 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain N646_2378 PF01467 Cytidylyltransferase-like N646_2379 PF05686 Glycosyl transferase family 90 N646_2380 PF00535 Glycosyl transferase family 2 N646_2381 PF00535 Glycosyl transferase family 2 N646_2382 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N646_2383 PF01219 Prokaryotic diacylglycerol kinase N646_2385 PF16363 GDP-mannose 4,6 dehydratase N646_2386 PF00483 Nucleotidyl transferase N646_2387 PF05523 WxcM-like, C-terminal N646_2389 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family N646_2394 PF07836 DmpG-like communication domain N646_2394 PF00682 HMGL-like N646_2395 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) N646_2396 PF01075 Glycosyltransferase family 9 (heptosyltransferase) N646_2398 PF03279 Bacterial lipid A biosynthesis acyltransferase N646_2399 PF01370 NAD dependent epimerase/dehydratase family N646_2400 PF06082 Exopolysaccharide biosynthesis protein YbjH N646_2405 PF02563 Polysaccharide biosynthesis/export protein N646_2405 PF10531 SLBB domain N646_2405 PF18412 Outer-membrane lipoprotein Wza C-terminal domain N646_2407 PF01943 Polysaccharide biosynthesis protein N646_2410 PF00534 Glycosyl transferases group 1 N646_2410 PF13439 Glycosyltransferase Family 4 N646_2412 PF00534 Glycosyl transferases group 1 N646_2412 PF13439 Glycosyltransferase Family 4 N646_2414 PF00535 Glycosyl transferase family 2 N646_2415 PF02397 Bacterial sugar transferase N646_2417 PF00953 Glycosyl transferase family 4 N646_2418 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) N646_2419 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain N646_2419 PF01565 FAD binding domain N646_2422 PF00534 Glycosyl transferases group 1 N646_2422 PF13439 Glycosyltransferase Family 4 N646_2426 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain N646_2426 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain N646_2426 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain N646_2427 PF01370 NAD dependent epimerase/dehydratase family N646_2428 PF00483 Nucleotidyl transferase N646_2429 PF00121 Triosephosphate isomerase N646_2431 PF05656 Protein of unknown function (DUF805) N646_2434 PF08220 DeoR-like helix-turn-helix domain N646_2434 PF00455 DeoR C terminal sensor domain N646_2436 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded N646_2438 PF06005 Cell division protein ZapB N646_2439 PF03737 Aldolase/RraA N646_2440 PF01040 UbiA prenyltransferase family N646_2441 PF00004 ATPase family associated with various cellular activities (AAA) N646_2441 PF07724 AAA domain (Cdc48 subfamily) N646_2442 PF00227 Proteasome subunit N646_2444 PF00356 Bacterial regulatory proteins, lacI family N646_2445 PF17764 3′ DNA-binding domain (3′BD) N646_2445 PF18319 PriA DNA helicase Cys-rich region (CRR) domain N646_2445 PF18074 Primosomal protein N C-terminal domain N646_2445 PF00270 DEAD/DEAH box helicase N646_2445 PF00271 Helicase conserved C-terminal domain N646_2446 PF01197 Ribosomal protein L31 N646_2447 PF00338 Ribosomal protein S10p/S20e N646_2448 PF00297 Ribosomal protein L3 N646_2449 PF00573 Ribosomal protein L4/L1 family N646_2450 PF00276 Ribosomal protein L23 N646_2451 PF00181 Ribosomal Proteins L2, RNA binding domain N646_2451 PF03947 Ribosomal Proteins L2, C-terminal domain N646_2452 PF00203 Ribosomal protein S19 N646_2453 PF00237 Ribosomal protein L22p/L17e N646_2454 PF07650 KH domain N646_2454 PF00189 Ribosomal protein S3, C-terminal domain N646_2455 PF00252 Ribosomal protein L16p/L10e N646_2456 PF00831 Ribosomal L29 protein N646_2457 PF00366 Ribosomal protein S17 N646_2458 PF00238 Ribosomal protein L14p/L23e N646_2459 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 N646_2459 PF00467 KOW motif N646_2460 PF00673 ribosomal L5P family C-terminus N646_2460 PF00281 Ribosomal protein L5 N646_2461 PF00253 Ribosomal protein S14p/S29e N646_2462 PF00410 Ribosomal protein S8 N646_2463 PF00347 Ribosomal protein L6 N646_2464 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast N646_2465 PF00333 Ribosomal protein S5, N-terminal domain N646_2465 PF03719 Ribosomal protein S5, C-terminal domain N646_2466 PF00327 Ribosomal protein L30p/L7e N646_2468 PF00344 SecY translocase N646_2469 PF00444 Ribosomal protein L36 N646_2470 PF00416 Ribosomal protein S13/S18 N646_2471 PF00411 Ribosomal protein S11 N646_2472 PF00163 Ribosomal protein S4/S9 N-terminal domain N646_2472 PF01479 S4 domain N646_2473 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain N646_2473 PF01000 RNA polymerase Rpb3/RpoA insert domain N646_2473 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain N646_2474 PF01196 Ribosomal protein L17 N646_2476 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase N646_2476 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N646_2478 PF13673 Acetyltransferase (GNAT) domain N646_2479 PF00271 Helicase conserved C-terminal domain N646_2479 PF00270 DEAD/DEAH box helicase N646_2479 PF03880 DbpA RNA binding domain N646_2481 PF02872 5'-nucleotidase, C-terminal domain N646_2481 PF00149 Calcineurin-like phosphoesterase N646_2482 PF10414 Sirohaem synthase dimerisation region N646_2482 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N646_2482 PF14824 Sirohaem biosynthesis protein central N646_2483 PF01507 Phosphoadenosine phosphosulfate reductase family N646_2484 PF00009 Elongation factor Tu GTP binding domain N646_2485 PF02080 TrkA-C domain N646_2485 PF03600 Citrate transporter N646_2490 PF00005 ABC transporter N646_2492 PF10795 Protein of unknown function (DUF2607) N646_2493 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) N646_2494 PF06526 Protein of unknown function (DUF1107) N646_2495 PF01625 Peptide methionine sulfoxide reductase N646_2496 PF17243 POTRA domain TamA domain 1 N646_2496 PF01103 Surface antigen N646_2496 PF07244 Surface antigen variable number repeat N646_2497 PF04357 TamB, inner membrane protein subunit of TAM complex N646_2498 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like N646_2500 PF00719 Inorganic pyrophosphatase N646_2501 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain N646_2503 PF02875 Mur ligase family, glutamate ligase domain N646_2503 PF08245 Mur ligase middle domain N646_2503 PF01225 Mur ligase family, catalytic domain N646_2504 PF02441 Flavoprotein N646_2506 PF00528 Binding-protein-dependent transport system inner membrane component N646_2507 PF00005 ABC transporter N646_2508 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2508 PF03466 LysR substrate binding domain N646_2509 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N646_2512 PF16868 NMT1-like family N646_2513 PF02863 Arginine repressor, C-terminal domain N646_2513 PF01316 Arginine repressor, DNA binding domain N646_2514 PF00056 lactate/malate dehydrogenase, NAD binding domain N646_2514 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain N646_2516 PF00348 Polyprenyl synthetase N646_2517 PF00829 Ribosomal prokaryotic L21 protein N646_2518 PF01016 Ribosomal L27 protein N646_2519 PF01926 50S ribosome-binding GTPase N646_2519 PF01018 GTP1/OBG N646_2520 PF06738 Putative threonine/serine exporter N646_2521 PF12821 Threonine/Serine exporter, ThrE N646_2522 PF00186 Dihydrofolate reductase N646_2523 PF00149 Calcineurin-like phosphoesterase N646_2524 PF04379 ApaG domain N646_2525 PF00398 Ribosomal RNA adenine dimethylase N646_2526 PF04166 Pyridoxal phosphate biosynthetic protein PdxA N646_2527 PF09312 SurA N-terminal domain N646_2528 PF03968 OstA-like protein N646_2528 PF04453 LPS transport system D N646_2529 PF00226 DnaJ domain N646_2529 PF05099 Tellurite resistance protein TerB N646_2531 PF00694 Aconitase C-terminal domain N646_2532 PF00330 Aconitase family (aconitate hydratase) N646_2533 PF00180 Isocitrate/isopropylmalate dehydrogenase N646_2534 PF08502 LeuA allosteric (dimerisation) domain N646_2534 PF00682 HMGL-like N646_2537 PF01569 PAP2 superfamily N646_2539 PF03466 LysR substrate binding domain N646_2539 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2540 PF00501 AMP-binding enzyme N646_2541 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N646_2541 PF00205 Thiamine pyrophosphate enzyme, central domain N646_2541 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N646_2542 PF10369 Small subunit of acetolactate synthase N646_2543 PF07694 5TMR of 5TMR-LYT N646_2543 PF00990 Diguanylate cyclase, GGDEF domain N646_2545 PF02887 Pyruvate kinase, alpha/beta domain N646_2545 PF00224 Pyruvate kinase, barrel domain N646_2546 PF08220 DeoR-like helix-turn-helix domain N646_2546 PF00455 DeoR C terminal sensor domain N646_2547 PF01380 SIS domain N646_2548 PF00465 Iron-containing alcohol dehydrogenase N646_2549 PF02733 Dak1 domain N646_2550 PF02734 DAK2 domain N646_2551 PF00391 PEP-utilising enzyme, mobile domain N646_2551 PF05524 PEP-utilising enzyme, N-terminal N646_2551 PF02896 PEP-utilising enzyme, TIM barrel domain N646_2552 PF02954 Bacterial regulatory protein, Fis family N646_2552 PF00158 Sigma-54 interaction domain N646_2552 PF00989 PAS fold N646_2553 PF05068 Mannitol repressor N646_2554 PF08125 Mannitol dehydrogenase C-terminal domain N646_2554 PF01232 Mannitol dehydrogenase Rossmann domain N646_2555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N646_2555 PF02378 Phosphotransferase system, EIIC N646_2555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N646_2559 PF03180 NLPA lipoprotein N646_2560 PF03979 Sigma-70 factor, region 1.1 N646_2560 PF04539 Sigma-70 region 3 N646_2560 PF04542 Sigma-70 region 2 N646_2560 PF04545 Sigma-70, region 4 N646_2560 PF00140 Sigma-70 factor, region 1.2 N646_2560 PF04546 Sigma-70, non-essential region N646_2561 PF01807 CHC2 zinc finger N646_2561 PF10410 DnaB-helicase binding domain of primase N646_2561 PF08278 DNA primase DnaG DnaB-binding N646_2561 PF08275 DNA primase catalytic core, N-terminal domain N646_2562 PF09424 Yqey-like protein N646_2563 PF01165 Ribosomal protein S21 N646_2564 PF00814 Glycoprotease family N646_2565 PF00561 alpha/beta hydrolase fold N646_2566 PF02660 Glycerol-3-phosphate acyltransferase N646_2567 PF02152 Dihydroneopterin aldolase N646_2568 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) N646_2569 PF02673 Bacitracin resistance protein BacA N646_2570 PF01743 Poly A polymerase head domain N646_2570 PF12627 Probable RNA and SrmB- binding site of polymerase A N646_2570 PF01966 HD domain N646_2571 PF01471 Putative peptidoglycan binding domain N646_2571 PF13401 AAA domain N646_2576 PF08239 Bacterial SH3 domain N646_2577 PF01384 Phosphate transporter family N646_2578 PF01865 Protein of unknown function DUF47 N646_2579 PF01928 CYTH domain N646_2581 PF00672 HAMP domain N646_2581 PF02743 Cache domain N646_2581 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_2582 PF08335 GlnD PII-uridylyltransferase N646_2582 PF03710 Glutamate-ammonia ligase adenylyltransferase N646_2583 PF00294 pfkB family carbohydrate kinase N646_2583 PF01467 Cytidylyltransferase-like N646_2584 PF02321 Outer membrane efflux protein N646_2585 PF00293 NUDIX domain N646_2586 PF06853 Protein of unknown function (DUF1249) N646_2587 PF00149 Calcineurin-like phosphoesterase N646_2588 PF05728 Uncharacterised protein family (UPF0227) N646_2589 PF00986 DNA gyrase B subunit, carboxyl terminus N646_2589 PF00204 DNA gyrase B N646_2589 PF01751 Toprim domain N646_2589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_2590 PF00521 DNA gyrase/topoisomerase IV, subunit A N646_2590 PF03989 DNA gyrase C-terminal domain, beta-propeller N646_2591 PF13180 PDZ domain N646_2592 PF00595 PDZ domain N646_2593 PF06295 Protein of unknown function (DUF1043) N646_2594 PF03969 AFG1-like ATPase N646_2595 PF00572 Ribosomal protein L13 N646_2596 PF00380 Ribosomal protein S9/S16 N646_2597 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal N646_2597 PF00355 Rieske [2Fe-2S] domain N646_2598 PF00032 Cytochrome b(C-terminal)/b6/petD N646_2598 PF00033 Cytochrome b/b6/petB N646_2599 PF02167 Cytochrome C1 family N646_2600 PF02798 Glutathione S-transferase, N-terminal domain N646_2600 PF00043 Glutathione S-transferase, C-terminal domain N646_2601 PF04386 Stringent starvation protein B N646_2602 PF04972 BON domain N646_2603 PF13580 SIS domain N646_2604 PF02021 Uncharacterised protein family UPF0102 N646_2605 PF04348 LppC putative lipoprotein N646_2606 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N646_2607 PF01795 MraW methylase family N646_2608 PF04999 Cell division protein FtsL N646_2609 PF03717 Penicillin-binding Protein dimerisation domain N646_2609 PF00905 Penicillin binding protein transpeptidase domain N646_2610 PF02875 Mur ligase family, glutamate ligase domain N646_2610 PF01225 Mur ligase family, catalytic domain N646_2610 PF08245 Mur ligase middle domain N646_2611 PF01225 Mur ligase family, catalytic domain N646_2611 PF02875 Mur ligase family, glutamate ligase domain N646_2611 PF08245 Mur ligase middle domain N646_2612 PF00953 Glycosyl transferase family 4 N646_2612 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 N646_2613 PF08245 Mur ligase middle domain N646_2613 PF02875 Mur ligase family, glutamate ligase domain N646_2614 PF01098 Cell cycle protein N646_2615 PF03033 Glycosyltransferase family 28 N-terminal domain N646_2615 PF04101 Glycosyltransferase family 28 C-terminal domain N646_2616 PF08245 Mur ligase middle domain N646_2616 PF02875 Mur ligase family, glutamate ligase domain N646_2616 PF01225 Mur ligase family, catalytic domain N646_2617 PF03799 Cell division protein FtsQ N646_2617 PF08478 POTRA domain, FtsQ-type N646_2618 PF02491 SHS2 domain inserted in FTSA N646_2619 PF00091 Tubulin/FtsZ family, GTPase domain N646_2619 PF12327 FtsZ family, C-terminal domain N646_2620 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase N646_2622 PF07517 SecA DEAD-like domain N646_2622 PF01043 SecA preprotein cross-linking domain N646_2622 PF07516 SecA Wing and Scaffold domain N646_2622 PF02810 SEC-C motif N646_2623 PF00293 NUDIX domain N646_2624 PF05173 Dihydrodipicolinate reductase, C-terminus N646_2624 PF01113 Dihydrodipicolinate reductase, N-terminus N646_2625 PF00117 Glutamine amidotransferase class-I N646_2625 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain N646_2626 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain N646_2626 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N646_2626 PF02142 MGS-like domain N646_2629 PF01925 Sulfite exporter TauE/SafE N646_2630 PF03458 UPF0126 domain N646_2631 PF01497 Periplasmic binding protein N646_2632 PF17113 Regulatory signalling modulator protein AmpE N646_2632 PF03186 CobD/Cbib protein N646_2633 PF01048 Phosphorylase superfamily N646_2635 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_2635 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster N646_2636 PF01493 GXGXG motif N646_2636 PF01645 Conserved region in glutamate synthase N646_2636 PF04898 Glutamate synthase central domain N646_2636 PF00310 Glutamine amidotransferases class-II N646_2637 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster N646_2637 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_2638 PF01645 Conserved region in glutamate synthase N646_2638 PF04898 Glutamate synthase central domain N646_2638 PF00310 Glutamine amidotransferases class-II N646_2638 PF01493 GXGXG motif N646_2639 PF16199 Radical_SAM C-terminal domain N646_2639 PF04055 Radical SAM superfamily N646_2640 PF00360 Phytochrome region N646_2640 PF01590 GAF domain N646_2640 PF00990 Diguanylate cyclase, GGDEF domain N646_2640 PF00563 EAL domain N646_2641 PF00512 His Kinase A (phospho-acceptor) domain N646_2641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_2641 PF01627 Hpt domain N646_2641 PF00072 Response regulator receiver domain N646_2641 PF00989 PAS fold N646_2641 PF18415 Histidine kinase receptor ArcB trans-membrane domain N646_2643 PF00486 Transcriptional regulatory protein, C terminal N646_2643 PF00072 Response regulator receiver domain N646_2645 PF03737 Aldolase/RraA N646_2647 PF01842 ACT domain N646_2647 PF13840 ACT domain N646_2647 PF00742 Homoserine dehydrogenase N646_2647 PF03447 Homoserine dehydrogenase, NAD binding domain N646_2647 PF00696 Amino acid kinase family N646_2648 PF00288 GHMP kinases N terminal domain N646_2648 PF08544 GHMP kinases C terminal N646_2649 PF00291 Pyridoxal-phosphate dependent enzyme N646_2649 PF14821 Threonine synthase N terminus N646_2651 PF01228 Glycine radical N646_2652 PF01261 Xylose isomerase-like TIM barrel N646_2653 PF03167 Uracil DNA glycosylase superfamily N646_2656 PF01235 Sodium:alanine symporter family N646_2657 PF03883 Peroxide stress protein YaaA N646_2658 PF00270 DEAD/DEAH box helicase N646_2658 PF00271 Helicase conserved C-terminal domain N646_2659 PF05175 Methyltransferase small domain N646_2660 PF05525 Branched-chain amino acid transport protein N646_2661 PF00258 Flavodoxin N646_2662 PF02899 Phage integrase, N-terminal SAM-like domain N646_2662 PF00589 Phage integrase family N646_2663 PF10411 Disulfide bond isomerase protein N-terminus N646_2663 PF13098 Thioredoxin-like domain N646_2664 PF17768 RecJ OB domain N646_2664 PF01368 DHH family N646_2664 PF02272 DHHA1 domain N646_2665 PF00472 RF-1 domain N646_2665 PF03462 PCRF domain N646_2666 PF01336 OB-fold nucleic acid binding domain N646_2666 PF00152 tRNA synthetases class II (D, K and N) N646_2667 PF00072 Response regulator receiver domain N646_2667 PF00158 Sigma-54 interaction domain N646_2667 PF02954 Bacterial regulatory protein, Fis family N646_2669 PF00248 Aldo/keto reductase family N646_2671 PF02976 DNA mismatch repair enzyme MutH N646_2673 PF00293 NUDIX domain N646_2674 PF00391 PEP-utilising enzyme, mobile domain N646_2674 PF01590 GAF domain N646_2674 PF05524 PEP-utilising enzyme, N-terminal N646_2674 PF02896 PEP-utilising enzyme, TIM barrel domain N646_2675 PF01925 Sulfite exporter TauE/SafE N646_2677 PF00303 Thymidylate synthase N646_2679 PF02690 Na+/Pi-cotransporter N646_2680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2680 PF03466 LysR substrate binding domain N646_2681 PF01022 Bacterial regulatory protein, arsR family N646_2682 PF01649 Ribosomal protein S20 N646_2683 PF03023 Lipid II flippase MurJ N646_2684 PF06574 FAD synthetase N646_2684 PF01687 Riboflavin kinase N646_2685 PF08264 Anticodon-binding domain of tRNA N646_2685 PF06827 Zinc finger found in FPG and IleRS N646_2685 PF00133 tRNA synthetases class I (I, L, M and V) N646_2686 PF01252 Signal peptidase (SPase) II N646_2688 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N646_2689 PF02401 LytB protein N646_2691 PF00072 Response regulator receiver domain N646_2691 PF04397 LytTr DNA-binding domain N646_2692 PF06580 Histidine kinase N646_2692 PF07694 5TMR of 5TMR-LYT N646_2693 PF02554 Carbon starvation protein CstA N646_2696 PF01380 SIS domain N646_2697 PF03702 Anhydro-N-acetylmuramic acid kinase N646_2698 PF00933 Glycosyl hydrolase family 3 N terminal domain N646_2699 PF00793 DAHP synthetase I family N646_2700 PF02153 Prephenate dehydrogenase N646_2700 PF01817 Chorismate mutase type II N646_2701 PF01551 Peptidase family M23 N646_2701 PF04225 Opacity-associated protein A LysM-like domain N646_2702 PF07238 PilZ domain N646_2703 PF12848 ABC transporter N646_2703 PF00005 ABC transporter N646_2704 PF01464 Transglycosylase SLT domain N646_2704 PF14718 Soluble lytic murein transglycosylase L domain N646_2705 PF01371 Trp repressor protein N646_2706 PF01931 Protein of unknown function DUF84 N646_2707 PF01817 Chorismate mutase type II N646_2707 PF00800 Prephenate dehydratase N646_2709 PF13276 HTH-like domain N646_2709 PF13333 Integrase core domain N646_2709 PF00665 Integrase core domain N646_2710 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein N646_2711 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_2711 PF01464 Transglycosylase SLT domain N646_2712 PF13525 Outer membrane lipoprotein N646_2713 PF01479 S4 domain N646_2713 PF00849 RNA pseudouridylate synthase N646_2715 PF07724 AAA domain (Cdc48 subfamily) N646_2715 PF00004 ATPase family associated with various cellular activities (AAA) N646_2715 PF10431 C-terminal, D2-small domain, of ClpB protein N646_2715 PF02861 Clp amino terminal domain, pathogenicity island component N646_2715 PF17871 AAA lid domain N646_2719 PF03411 Penicillin-insensitive murein endopeptidase N646_2721 PF12838 4Fe-4S dicluster domain N646_2723 PF04381 Putative exonuclease, RdgC N646_2724 PF00486 Transcriptional regulatory protein, C terminal N646_2724 PF00072 Response regulator receiver domain N646_2725 PF11808 Phosphate regulon sensor protein PhoR N646_2725 PF00512 His Kinase A (phospho-acceptor) domain N646_2725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_2725 PF00989 PAS fold N646_2726 PF12849 PBP superfamily domain N646_2727 PF01797 Transposase IS200 like N646_2728 PF02541 Ppx/GppA phosphatase family N646_2729 PF13090 Polyphosphate kinase C-terminal domain 2 N646_2729 PF02503 Polyphosphate kinase middle domain N646_2729 PF17941 Polyphosphate kinase C-terminal domain 1 N646_2729 PF13089 Polyphosphate kinase N-terminal domain N646_2730 PF00528 Binding-protein-dependent transport system inner membrane component N646_2731 PF00528 Binding-protein-dependent transport system inner membrane component N646_2732 PF00005 ABC transporter N646_2733 PF01895 PhoU domain N646_2734 PF03976 Polyphosphate kinase 2 (PPK2) N646_2735 PF03932 CutC family N646_2737 PF00578 AhpC/TSA family N646_2737 PF10417 C-terminal domain of 1-Cys peroxiredoxin N646_2738 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2738 PF03466 LysR substrate binding domain N646_2740 PF01274 Malate synthase N646_2741 PF00463 Isocitrate lyase family N646_2742 PF00571 CBS domain N646_2744 PF02547 Queuosine biosynthesis protein N646_2745 PF01702 Queuine tRNA-ribosyltransferase N646_2746 PF02699 Preprotein translocase subunit N646_2747 PF13721 SecD export protein N-terminal TM region N646_2747 PF07549 SecD/SecF GG Motif N646_2747 PF02355 Protein export membrane protein N646_2748 PF02355 Protein export membrane protein N646_2748 PF07549 SecD/SecF GG Motif N646_2751 PF00459 Inositol monophosphatase family N646_2752 PF00588 SpoU rRNA Methylase family N646_2753 PF02082 Transcriptional regulator N646_2754 PF00266 Aminotransferase class-V N646_2755 PF01592 NifU-like N terminal domain N646_2756 PF01521 Iron-sulphur cluster biosynthesis N646_2757 PF00226 DnaJ domain N646_2757 PF07743 HSCB C-terminal oligomerisation domain N646_2758 PF00012 Hsp70 protein N646_2759 PF00111 2Fe-2S iron-sulfur cluster binding domain N646_2760 PF04384 Iron-sulphur cluster assembly N646_2761 PF00883 Cytosol aminopeptidase family, catalytic domain N646_2761 PF12404 Peptidase N646_2762 PF00334 Nucleoside diphosphate kinase N646_2763 PF04055 Radical SAM superfamily N646_2764 PF13464 Domain of unknown function (DUF4115) N646_2765 PF04551 GcpE protein N646_2766 PF03129 Anticodon binding domain N646_2766 PF13393 Histidyl-tRNA synthetase N646_2767 PF09976 Tetratricopeptide repeat-like domain N646_2768 PF13360 PQQ-like domain N646_2769 PF01926 50S ribosome-binding GTPase N646_2769 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal N646_2771 PF02601 Exonuclease VII, large subunit N646_2771 PF13742 OB-fold nucleic acid binding domain N646_2772 PF00571 CBS domain N646_2772 PF00478 IMP dehydrogenase / GMP reductase domain N646_2773 PF00958 GMP synthase C terminal domain N646_2773 PF00117 Glutamine amidotransferase class-I N646_2773 PF02540 NAD synthase N646_2774 PF03553 Na+/H+ antiporter family N646_2775 PF06483 Chitinase C N646_2775 PF00704 Glycosyl hydrolases family 18 N646_2776 PF01184 GPR1/FUN34/yaaH family N646_2777 PF01235 Sodium:alanine symporter family N646_2778 PF01266 FAD dependent oxidoreductase N646_2780 PF01053 Cys/Met metabolism PLP-dependent enzyme N646_2781 PF00202 Aminotransferase class-III N646_2785 PF00583 Acetyltransferase (GNAT) family N646_2785 PF00795 Carbon-nitrogen hydrolase N646_2786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2786 PF03466 LysR substrate binding domain N646_2791 PF00239 Resolvase, N terminal domain N646_2791 PF02796 Helix-turn-helix domain of resolvase N646_2794 PF00075 RNase H N646_2796 PF01668 SmpB protein N646_2797 PF03364 Polyketide cyclase / dehydrase and lipid transport N646_2798 PF03658 RnfH family Ubiquitin N646_2799 PF04355 SmpA / OmlA family N646_2801 PF02463 RecF/RecN/SMC N terminal domain N646_2803 PF01513 ATP-NAD kinase N646_2804 PF01025 GrpE N646_2805 PF00375 Sodium:dicarboxylate symporter family N646_2806 PF00012 Hsp70 protein N646_2807 PF00684 DnaJ central domain N646_2807 PF00226 DnaJ domain N646_2807 PF01556 DnaJ C terminal domain N646_2813 PF03806 AbgT putative transporter family N646_2814 PF14437 MafB19-like deaminase N646_2816 PF01464 Transglycosylase SLT domain N646_2816 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_2817 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain N646_2817 PF02769 AIR synthase related protein, C-terminal domain N646_2817 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal N646_2821 PF00593 TonB dependent receptor N646_2821 PF07715 TonB-dependent Receptor Plug Domain N646_2824 PF01546 Peptidase family M20/M25/M40 N646_2824 PF07687 Peptidase dimerisation domain N646_2825 PF00860 Permease family N646_2826 PF00156 Phosphoribosyl transferase domain N646_2828 PF07417 Sigma factor-binding transcriptional regulator Crl N646_2829 PF01472 PUA domain N646_2829 PF00696 Amino acid kinase family N646_2830 PF00171 Aldehyde dehydrogenase family N646_2831 PF03477 ATP cone domain N646_2832 PF01872 RibD C-terminal domain N646_2832 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N646_2833 PF00677 Lumazine binding domain N646_2834 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N646_2834 PF00925 GTP cyclohydrolase II N646_2835 PF00885 6,7-dimethyl-8-ribityllumazine synthase N646_2836 PF01029 NusB family N646_2837 PF02769 AIR synthase related protein, C-terminal domain N646_2837 PF00586 AIR synthase related protein, N-terminal domain N646_2838 PF04608 Phosphatidylglycerophosphatase A N646_2839 PF13292 1-deoxy-D-xylulose-5-phosphate synthase N646_2839 PF02779 Transketolase, pyrimidine binding domain N646_2839 PF02780 Transketolase, C-terminal domain N646_2840 PF00348 Polyprenyl synthetase N646_2841 PF02609 Exonuclease VII small subunit N646_2842 PF01618 MotA/TolQ/ExbB proton channel family N646_2843 PF00691 OmpA family N646_2843 PF13677 Membrane MotB of proton-channel complex MotA/MotB N646_2844 PF02926 THUMP domain N646_2844 PF02568 Thiamine biosynthesis protein (ThiI) N646_2845 PF03466 LysR substrate binding domain N646_2845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_2847 PF04241 Protein of unknown function (DUF423) N646_2848 PF01728 FtsJ-like methyltransferase N646_2848 PF18125 RlmM ferredoxin-like domain N646_2849 PF13276 HTH-like domain N646_2849 PF13333 Integrase core domain N646_2849 PF00665 Integrase core domain N646_2851 PF01367 5'-3' exonuclease, C-terminal SAM fold N646_2851 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain N646_2852 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases N646_2852 PF11892 Domain of unknown function (DUF3412) N646_2852 PF03641 Possible lysine decarboxylase N646_2853 PF00990 Diguanylate cyclase, GGDEF domain N646_2853 PF03707 Bacterial signalling protein N terminal repeat N646_2853 PF00563 EAL domain N646_2855 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term N646_2855 PF14489 QueF-like protein N646_2857 PF07348 Syd protein (SUKH-2) N646_2858 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) N646_2859 PF03180 NLPA lipoprotein N646_2860 PF00528 Binding-protein-dependent transport system inner membrane component N646_2861 PF00005 ABC transporter N646_2861 PF09383 NIL domain N646_2863 PF00356 Bacterial regulatory proteins, lacI family N646_2864 PF02378 Phosphotransferase system, EIIC N646_2864 PF00367 phosphotransferase system, EIIB N646_2865 PF00128 Alpha amylase, catalytic domain N646_2865 PF16657 Maltogenic Amylase, C-terminal domain N646_2868 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) N646_2868 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N646_2869 PF00464 Serine hydroxymethyltransferase N646_2870 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family N646_2870 PF04055 Radical SAM superfamily N646_2871 PF03099 Biotin/lipoate A/B protein ligase family N646_2872 PF04359 Protein of unknown function (DUF493) N646_2873 PF00768 D-alanyl-D-alanine carboxypeptidase N646_2873 PF07943 Penicillin-binding protein 5, C-terminal domain N646_2874 PF03330 Lytic transglycolase N646_2874 PF05036 Sporulation related domain N646_2875 PF01098 Cell cycle protein N646_2876 PF03717 Penicillin-binding Protein dimerisation domain N646_2876 PF00905 Penicillin binding protein transpeptidase domain N646_2877 PF02590 Predicted SPOUT methyltransferase N646_2879 PF06144 DNA polymerase III, delta subunit N646_2879 PF14840 Processivity clamp loader gamma complex DNA pol III C-term N646_2880 PF04390 Lipopolysaccharide-assembly N646_2881 PF13603 Leucyl-tRNA synthetase, Domain 2 N646_2881 PF00133 tRNA synthetases class I (I, L, M and V) N646_2881 PF08264 Anticodon-binding domain of tRNA N646_2882 PF07295 Zinc-ribbon containing domain N646_2883 PF00795 Carbon-nitrogen hydrolase N646_2884 PF00571 CBS domain N646_2884 PF03471 Transporter associated domain N646_2885 PF02130 Uncharacterized protein family UPF0054 N646_2886 PF02562 PhoH-like protein N646_2887 PF01938 TRAM domain N646_2887 PF04055 Radical SAM superfamily N646_2887 PF00919 Uncharacterized protein family UPF0004 N646_2888 PF01494 FAD binding domain N646_2889 PF01926 50S ribosome-binding GTPase N646_2889 PF06071 Protein of unknown function (DUF933) N646_2890 PF01195 Peptidyl-tRNA hydrolase N646_2891 PF14572 Phosphoribosyl synthetase-associated domain N646_2891 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase N646_2892 PF08544 GHMP kinases C terminal N646_2892 PF00288 GHMP kinases N terminal domain N646_2893 PF03550 Outer membrane lipoprotein LolB N646_2894 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain N646_2894 PF01488 Shikimate / quinate 5-dehydrogenase N646_2894 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain N646_2895 PF00472 RF-1 domain N646_2895 PF03462 PCRF domain N646_2896 PF17827 PrmC N-terminal domain N646_2896 PF13847 Methyltransferase domain N646_2897 PF04247 Invasion gene expression up-regulator, SirB N646_2898 PF13369 Transglutaminase-like superfamily N646_2899 PF00793 DAHP synthetase I family N646_2900 PF00149 Calcineurin-like phosphoesterase N646_2900 PF02872 5'-nucleotidase, C-terminal domain N646_2901 PF04073 Aminoacyl-tRNA editing domain N646_2902 PF01479 S4 domain N646_2902 PF00849 RNA pseudouridylate synthase N646_2903 PF01713 Smr domain N646_2906 PF03173 Putative carbohydrate binding domain N646_2906 PF02838 Glycosyl hydrolase family 20, domain 2 N646_2906 PF00728 Glycosyl hydrolase family 20, catalytic domain N646_2906 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain N646_2909 PF00403 Heavy-metal-associated domain N646_2910 PF13609 Gram-negative porin N646_2911 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) N646_2912 PF00749 tRNA synthetases class I (E and Q), catalytic domain N646_2913 PF01389 OmpA-like transmembrane domain N646_2913 PF00691 OmpA family N646_2922 PF00072 Response regulator receiver domain N646_2922 PF01584 CheW-like domain N646_2923 PF01739 CheR methyltransferase, SAM binding domain N646_2923 PF03705 CheR methyltransferase, all-alpha domain N646_2924 PF00460 Flagella basal body rod protein N646_2925 PF00460 Flagella basal body rod protein N646_2925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_2926 PF13860 FlgD Ig-like domain N646_2926 PF03963 Flagellar hook capping protein - N-terminal region N646_2926 PF13861 FlgD Tudor-like domain N646_2927 PF07559 Flagellar basal body protein FlaE N646_2927 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_2927 PF00460 Flagella basal body rod protein N646_2929 PF00460 Flagella basal body rod protein N646_2929 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_2930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_2930 PF00460 Flagella basal body rod protein N646_2931 PF02107 Flagellar L-ring protein N646_2932 PF02119 Flagellar P-ring protein N646_2933 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase N646_2933 PF10135 Rod binding protein N646_2934 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_2934 PF07196 Flagellin hook IN motif N646_2935 PF00669 Bacterial flagellin N-terminal helical region N646_2936 PF07196 Flagellin hook IN motif N646_2936 PF00700 Bacterial flagellin C-terminal helical region N646_2936 PF00669 Bacterial flagellin N-terminal helical region N646_2937 PF00669 Bacterial flagellin N-terminal helical region N646_2937 PF07196 Flagellin hook IN motif N646_2937 PF00700 Bacterial flagellin C-terminal helical region N646_2938 PF07196 Flagellin hook IN motif N646_2938 PF00700 Bacterial flagellin C-terminal helical region N646_2938 PF00669 Bacterial flagellin N-terminal helical region N646_2939 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 N646_2940 PF02896 PEP-utilising enzyme, TIM barrel domain N646_2940 PF00391 PEP-utilising enzyme, mobile domain N646_2940 PF05524 PEP-utilising enzyme, N-terminal N646_2941 PF00381 PTS HPr component phosphorylation site N646_2942 PF00291 Pyridoxal-phosphate dependent enzyme N646_2944 PF04354 ZipA, C-terminal FtsZ-binding domain N646_2945 PF00533 BRCA1 C Terminus (BRCT) domain N646_2945 PF12826 Helix-hairpin-helix motif N646_2945 PF03119 NAD-dependent DNA ligase C4 zinc finger domain N646_2945 PF03120 NAD-dependent DNA ligase OB-fold domain N646_2945 PF01653 NAD-dependent DNA ligase adenylation domain N646_2947 PF03573 outer membrane porin, OprD family N646_2949 PF16200 C-terminal region of band_7 N646_2949 PF01145 SPFH domain / Band 7 family N646_2950 PF11658 Cellulose biosynthesis protein BcsG N646_2952 PF10995 Cellulose biosynthesis GIL N646_2954 PF06564 Cellulose biosynthesis protein BcsQ N646_2956 PF07238 PilZ domain N646_2956 PF00535 Glycosyl transferase family 2 N646_2956 PF03552 Cellulose synthase N646_2957 PF03170 Bacterial cellulose synthase subunit N646_2958 PF01270 Glycosyl hydrolases family 8 N646_2959 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) N646_2959 PF13176 Tetratricopeptide repeat N646_2960 PF00085 Thioredoxin N646_2961 PF00106 short chain dehydrogenase N646_2962 PF01370 NAD dependent epimerase/dehydratase family N646_2962 PF08338 Domain of unknown function (DUF1731) N646_2963 PF07556 Protein of unknown function (DUF1538) N646_2964 PF07556 Protein of unknown function (DUF1538) N646_2967 PF12850 Calcineurin-like phosphoesterase superfamily domain N646_2970 PF17323 Trans-membrane regulatory protein ToxS N646_2971 PF00486 Transcriptional regulatory protein, C terminal N646_2972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_2972 PF00183 Hsp90 protein N646_2974 PF05191 Adenylate kinase, active site lid N646_2975 PF00762 Ferrochelatase N646_2976 PF00854 POT family N646_2977 PF02357 Transcription termination factor nusG N646_2978 PF13537 Glutamine amidotransferase domain N646_2978 PF00733 Asparagine synthase N646_2980 PF00999 Sodium/hydrogen exchanger family N646_2980 PF02254 TrkA-N domain N646_2981 PF01047 MarR family N646_2981 PF00480 ROK family N646_2982 PF01979 Amidohydrolase family N646_2983 PF00367 phosphotransferase system, EIIB N646_2983 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 N646_2983 PF02378 Phosphotransferase system, EIIC N646_2984 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain N646_2984 PF00749 tRNA synthetases class I (E and Q), catalytic domain N646_2985 PF01475 Ferric uptake regulator family N646_2987 PF00258 Flavodoxin N646_2989 PF12697 Alpha/beta hydrolase family N646_2990 PF17206 SeqA protein N-terminal domain N646_2990 PF03925 SeqA protein C-terminal domain N646_2991 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N646_2991 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N646_2991 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N646_2991 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N646_2993 PF01784 NIF3 (NGG1p interacting factor 3) N646_2994 PF00285 Citrate synthase, C-terminal domain N646_2995 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N646_2996 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit N646_2997 PF00890 FAD binding domain N646_2997 PF02910 Fumarate reductase flavoprotein C-term N646_2998 PF13085 2Fe-2S iron-sulfur cluster binding domain N646_2999 PF00676 Dehydrogenase E1 component N646_2999 PF16078 2-oxoglutarate dehydrogenase N-terminus N646_2999 PF16870 2-oxoglutarate dehydrogenase C-terminal N646_2999 PF02779 Transketolase, pyrimidine binding domain N646_3000 PF00364 Biotin-requiring enzyme N646_3000 PF02817 e3 binding domain N646_3000 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N646_3001 PF00549 CoA-ligase N646_3001 PF08442 ATP-grasp domain N646_3002 PF00549 CoA-ligase N646_3002 PF02629 CoA binding domain N646_3003 PF00950 ABC 3 transport family N646_3004 PF00005 ABC transporter N646_3005 PF01297 Zinc-uptake complex component A periplasmic N646_3006 PF02311 AraC-like ligand binding domain N646_3006 PF12833 Helix-turn-helix domain N646_3007 PF04023 FeoA domain N646_3008 PF02421 Ferrous iron transport protein B N646_3008 PF17910 FeoB cytosolic helical domain N646_3008 PF07670 Nucleoside recognition N646_3008 PF07664 Ferrous iron transport protein B C terminus N646_3012 PF03485 Arginyl tRNA synthetase N terminal domain N646_3012 PF00750 tRNA synthetases class I (R) N646_3012 PF05746 DALR anticodon binding domain N646_3013 PF06185 YecM protein N646_3015 PF00089 Trypsin N646_3016 PF01842 ACT domain N646_3016 PF00551 Formyl transferase N646_3018 PF04851 Type III restriction enzyme, res subunit N646_3018 PF13307 Helicase C-terminal domain N646_3019 PF00814 Glycoprotease family N646_3021 PF03843 Outer membrane lipoprotein Slp family N646_3022 PF00561 alpha/beta hydrolase fold N646_3023 PF00501 AMP-binding enzyme N646_3023 PF13193 AMP-binding enzyme C-terminal domain N646_3024 PF00570 HRDC domain N646_3024 PF01612 3'-5' exonuclease N646_3025 PF03776 Septum formation topological specificity factor MinE N646_3026 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain N646_3027 PF05209 Septum formation inhibitor MinC, N-terminal domain N646_3027 PF03775 Septum formation inhibitor MinC, C-terminal domain N646_3028 PF05166 YcgL domain N646_3029 PF13406 Transglycosylase SLT domain N646_3030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3030 PF03466 LysR substrate binding domain N646_3031 PF07670 Nucleoside recognition N646_3031 PF07662 Na+ dependent nucleoside transporter C-terminus N646_3031 PF01773 Na+ dependent nucleoside transporter N-terminus N646_3032 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain N646_3032 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain N646_3033 PF00109 Beta-ketoacyl synthase, N-terminal domain N646_3033 PF02801 Beta-ketoacyl synthase, C-terminal domain N646_3035 PF07977 FabA-like domain N646_3036 PF02801 Beta-ketoacyl synthase, C-terminal domain N646_3036 PF00109 Beta-ketoacyl synthase, N-terminal domain N646_3041 PF00221 Aromatic amino acid lyase N646_3042 PF00535 Glycosyl transferase family 2 N646_3043 PF07977 FabA-like domain N646_3046 PF00550 Phosphopantetheine attachment site N646_3047 PF00550 Phosphopantetheine attachment site N646_3052 PF04820 Tryptophan halogenase N646_3054 PF00270 DEAD/DEAH box helicase N646_3054 PF00271 Helicase conserved C-terminal domain N646_3055 PF02254 TrkA-N domain N646_3055 PF02080 TrkA-C domain N646_3056 PF02386 Cation transport protein N646_3059 PF02696 Uncharacterized ACR, YdiU/UPF0061 family N646_3060 PF03480 Bacterial extracellular solute-binding protein, family 7 N646_3061 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component N646_3062 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N646_3064 PF02954 Bacterial regulatory protein, Fis family N646_3064 PF00158 Sigma-54 interaction domain N646_3064 PF00072 Response regulator receiver domain N646_3065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3065 PF02743 Cache domain N646_3065 PF00512 His Kinase A (phospho-acceptor) domain N646_3066 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N646_3066 PF05697 Bacterial trigger factor protein (TF) N646_3066 PF05698 Bacterial trigger factor protein (TF) C-terminus N646_3067 PF00574 Clp protease N646_3068 PF10431 C-terminal, D2-small domain, of ClpB protein N646_3068 PF07724 AAA domain (Cdc48 subfamily) N646_3068 PF06689 ClpX C4-type zinc finger N646_3069 PF02190 ATP-dependent protease La (LON) substrate-binding domain N646_3069 PF00004 ATPase family associated with various cellular activities (AAA) N646_3069 PF05362 Lon protease (S16) C-terminal proteolytic domain N646_3070 PF00216 Bacterial DNA-binding protein N646_3071 PF13145 PPIC-type PPIASE domain N646_3075 PF13286 Phosphohydrolase-associated domain N646_3075 PF01966 HD domain N646_3077 PF00155 Aminotransferase class I and II N646_3078 PF01584 CheW-like domain N646_3078 PF00072 Response regulator receiver domain N646_3080 PF01243 Pyridoxamine 5'-phosphate oxidase N646_3081 PF06228 Haem utilisation ChuX/HutX N646_3082 PF04055 Radical SAM superfamily N646_3083 PF03544 Gram-negative bacterial TonB protein C-terminal N646_3084 PF01618 MotA/TolQ/ExbB proton channel family N646_3085 PF02472 Biopolymer transport protein ExbD/TolR N646_3087 PF01032 FecCD transport family N646_3088 PF00005 ABC transporter N646_3096 PF01467 Cytidylyltransferase-like N646_3097 PF02540 NAD synthase N646_3098 PF03476 MOSC N-terminal beta barrel domain N646_3098 PF03473 MOSC domain N646_3098 PF00111 2Fe-2S iron-sulfur cluster binding domain N646_3098 PF03476 MOSC N-terminal beta barrel domain N646_3098 PF03473 MOSC domain N646_3098 PF00111 2Fe-2S iron-sulfur cluster binding domain N646_3099 PF01679 Proteolipid membrane potential modulator N646_3100 PF01979 Amidohydrolase family N646_3101 PF05661 Protein of unknown function (DUF808) N646_3104 PF01032 FecCD transport family N646_3105 PF01032 FecCD transport family N646_3106 PF01497 Periplasmic binding protein N646_3107 PF00593 TonB dependent receptor N646_3107 PF07715 TonB-dependent Receptor Plug Domain N646_3108 PF00005 ABC transporter N646_3108 PF00664 ABC transporter transmembrane region N646_3109 PF00005 ABC transporter N646_3109 PF00664 ABC transporter transmembrane region N646_3114 PF00528 Binding-protein-dependent transport system inner membrane component N646_3115 PF00528 Binding-protein-dependent transport system inner membrane component N646_3115 PF14785 Maltose transport system permease protein MalF P2 domain N646_3116 PF01547 Bacterial extracellular solute-binding protein N646_3117 PF00005 ABC transporter N646_3117 PF08402 TOBE domain N646_3118 PF02397 Bacterial sugar transferase N646_3121 PF02706 Chain length determinant protein N646_3121 PF13807 G-rich domain on putative tyrosine kinase N646_3121 PF13614 AAA domain N646_3123 PF13439 Glycosyltransferase Family 4 N646_3123 PF00534 Glycosyl transferases group 1 N646_3131 PF00440 Bacterial regulatory proteins, tetR family N646_3131 PF16925 Tetracyclin repressor-like, C-terminal domain N646_3132 PF00107 Zinc-binding dehydrogenase N646_3132 PF16884 N-terminal domain of oxidoreductase N646_3133 PF13417 Glutathione S-transferase, N-terminal domain N646_3134 PF06628 Catalase-related immune-responsive N646_3134 PF00199 Catalase N646_3135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N646_3135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N646_3137 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_3137 PF18113 Rubredoxin binding C-terminal domain N646_3138 PF00258 Flavodoxin N646_3138 PF00753 Metallo-beta-lactamase superfamily N646_3138 PF00301 Rubredoxin N646_3139 PF00158 Sigma-54 interaction domain N646_3139 PF01590 GAF domain N646_3141 PF13419 Haloacid dehalogenase-like hydrolase N646_3142 PF00127 Copper binding proteins, plastocyanin/azurin family N646_3144 PF01266 FAD dependent oxidoreductase N646_3145 PF18113 Rubredoxin binding C-terminal domain N646_3145 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_3147 PF00848 Ring hydroxylating alpha subunit (catalytic domain) N646_3147 PF00355 Rieske [2Fe-2S] domain N646_3148 PF02028 BCCT, betaine/carnitine/choline family transporter N646_3150 PF13276 HTH-like domain N646_3150 PF13333 Integrase core domain N646_3150 PF00665 Integrase core domain N646_3151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3151 PF03466 LysR substrate binding domain N646_3152 PF02386 Cation transport protein N646_3153 PF02080 TrkA-C domain N646_3153 PF02254 TrkA-N domain N646_3154 PF00072 Response regulator receiver domain N646_3154 PF00486 Transcriptional regulatory protein, C terminal N646_3155 PF00512 His Kinase A (phospho-acceptor) domain N646_3155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3156 PF00664 ABC transporter transmembrane region N646_3156 PF00005 ABC transporter N646_3157 PF00593 TonB dependent receptor N646_3157 PF07715 TonB-dependent Receptor Plug Domain N646_3158 PF00005 ABC transporter N646_3159 PF01497 Periplasmic binding protein N646_3160 PF01032 FecCD transport family N646_3162 PF00529 HlyD membrane-fusion protein of T1SS N646_3163 PF00005 ABC transporter N646_3163 PF00664 ABC transporter transmembrane region N646_3165 PF00196 Bacterial regulatory proteins, luxR family N646_3166 PF00196 Bacterial regulatory proteins, luxR family N646_3168 PF00672 HAMP domain N646_3168 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_3168 PF02743 Cache domain N646_3169 PF07726 ATPase family associated with various cellular activities (AAA) N646_3169 PF17863 AAA lid domain N646_3170 PF01882 Protein of unknown function DUF58 N646_3172 PF13519 von Willebrand factor type A domain N646_3173 PF13519 von Willebrand factor type A domain N646_3173 PF07584 Aerotolerance regulator N-terminal N646_3177 PF00005 ABC transporter N646_3178 PF00528 Binding-protein-dependent transport system inner membrane component N646_3179 PF00528 Binding-protein-dependent transport system inner membrane component N646_3180 PF12849 PBP superfamily domain N646_3181 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_3181 PF00672 HAMP domain N646_3185 PF07715 TonB-dependent Receptor Plug Domain N646_3185 PF00593 TonB dependent receptor N646_3186 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain N646_3186 PF00326 Prolyl oligopeptidase family N646_3187 PF00270 DEAD/DEAH box helicase N646_3187 PF00271 Helicase conserved C-terminal domain N646_3189 PF01476 LysM domain N646_3189 PF17969 L,D-transpeptidase C-terminal domain N646_3189 PF03734 L,D-transpeptidase catalytic domain N646_3190 PF00875 DNA photolyase N646_3190 PF03441 FAD binding domain of DNA photolyase N646_3191 PF13411 MerR HTH family regulatory protein N646_3192 PF08349 Protein of unknown function (DUF1722) N646_3193 PF01048 Phosphorylase superfamily N646_3196 PF00990 Diguanylate cyclase, GGDEF domain N646_3197 PF11742 Protein of unknown function (DUF3302) N646_3198 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_3198 PF00529 HlyD membrane-fusion protein of T1SS N646_3199 PF07155 ECF-type riboflavin transporter, S component N646_3200 PF00005 ABC transporter N646_3200 PF12558 ATP-binding cassette cobalt transporter N646_3201 PF00005 ABC transporter N646_3201 PF12558 ATP-binding cassette cobalt transporter N646_3205 PF13237 4Fe-4S dicluster domain N646_3205 PF12801 4Fe-4S binding domain N646_3206 PF12800 4Fe-4S binding domain N646_3206 PF12838 4Fe-4S dicluster domain N646_3207 PF00583 Acetyltransferase (GNAT) family N646_3210 PF12945 Flagellar protein YcgR N646_3210 PF07238 PilZ domain N646_3211 PF13609 Gram-negative porin N646_3212 PF12729 Four helix bundle sensory module for signal transduction N646_3212 PF00672 HAMP domain N646_3212 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_3213 PF13654 AAA domain N646_3213 PF05362 Lon protease (S16) C-terminal proteolytic domain N646_3215 PF00005 ABC transporter N646_3215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_3216 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain N646_3216 PF00326 Prolyl oligopeptidase family N646_3217 PF03466 LysR substrate binding domain N646_3217 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3218 PF02652 L-lactate permease N646_3219 PF01070 FMN-dependent dehydrogenase N646_3221 PF00924 Mechanosensitive ion channel N646_3222 PF00194 Eukaryotic-type carbonic anhydrase N646_3228 PF00107 Zinc-binding dehydrogenase N646_3228 PF08240 Alcohol dehydrogenase GroES-like domain N646_3229 PF00155 Aminotransferase class I and II N646_3230 PF00990 Diguanylate cyclase, GGDEF domain N646_3230 PF00563 EAL domain N646_3230 PF13188 PAS domain N646_3230 PF03707 Bacterial signalling protein N terminal repeat N646_3231 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_3233 PF00080 Copper/zinc superoxide dismutase (SODC) N646_3234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3234 PF00072 Response regulator receiver domain N646_3234 PF00512 His Kinase A (phospho-acceptor) domain N646_3234 PF13426 PAS domain N646_3234 PF08448 PAS fold N646_3235 PF00486 Transcriptional regulatory protein, C terminal N646_3235 PF00072 Response regulator receiver domain N646_3239 PF03466 LysR substrate binding domain N646_3239 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N646_3248 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3248 PF03466 LysR substrate binding domain N646_3251 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain N646_3251 PF18269 T3SS EscN ATPase C-terminal domain N646_3253 PF14841 FliG middle domain N646_3253 PF01706 FliG C-terminal domain N646_3253 PF14842 FliG N-terminal domain N646_3254 PF08345 Flagellar M-ring protein C-terminal N646_3254 PF01514 Secretory protein of YscJ/FliF family N646_3255 PF02049 Flagellar hook-basal body complex protein FliE N646_3256 PF02954 Bacterial regulatory protein, Fis family N646_3256 PF00158 Sigma-54 interaction domain N646_3256 PF00072 Response regulator receiver domain N646_3259 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term N646_3260 PF00813 FliP family N646_3261 PF01313 Bacterial export proteins, family 3 N646_3262 PF01311 Bacterial export proteins, family 1 N646_3263 PF01312 FlhB HrpN YscU SpaS Family N646_3264 PF00771 FHIPEP family N646_3266 PF00669 Bacterial flagellin N-terminal helical region N646_3266 PF00700 Bacterial flagellin C-terminal helical region N646_3267 PF02465 Flagellar hook-associated protein 2 N-terminus N646_3267 PF07195 Flagellar hook-associated protein 2 C-terminus N646_3267 PF07196 Flagellin hook IN motif N646_3268 PF02561 Flagellar protein FliS N646_3271 PF03748 Flagellar basal body-associated protein FliL N646_3272 PF04545 Sigma-70, region 4 N646_3272 PF04542 Sigma-70 region 2 N646_3273 PF01618 MotA/TolQ/ExbB proton channel family N646_3274 PF00691 OmpA family N646_3274 PF13677 Membrane MotB of proton-channel complex MotA/MotB N646_3276 PF08000 Bacterial PH domain N646_3281 PF04055 Radical SAM superfamily N646_3282 PF00923 Transaldolase/Fructose-6-phosphate aldolase N646_3286 PF00672 HAMP domain N646_3286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3286 PF00512 His Kinase A (phospho-acceptor) domain N646_3287 PF00486 Transcriptional regulatory protein, C terminal N646_3287 PF00072 Response regulator receiver domain N646_3289 PF00583 Acetyltransferase (GNAT) family N646_3291 PF07690 Major Facilitator Superfamily N646_3292 PF03466 LysR substrate binding domain N646_3292 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3293 PF00892 EamA-like transporter family N646_3298 PF13533 Biotin-lipoyl like N646_3300 PF01594 AI-2E family transporter N646_3301 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) N646_3303 PF00175 Oxidoreductase NAD-binding domain N646_3303 PF00970 Oxidoreductase FAD-binding domain N646_3305 PF09905 DNA-binding protein VF530 N646_3306 PF03466 LysR substrate binding domain N646_3306 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3308 PF00881 Nitroreductase family N646_3309 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term N646_3309 PF12833 Helix-turn-helix domain N646_3311 PF00128 Alpha amylase, catalytic domain N646_3311 PF00686 Starch binding domain N646_3312 PF07943 Penicillin-binding protein 5, C-terminal domain N646_3312 PF00768 D-alanyl-D-alanine carboxypeptidase N646_3313 PF00561 alpha/beta hydrolase fold N646_3316 PF03441 FAD binding domain of DNA photolyase N646_3316 PF00875 DNA photolyase N646_3317 PF02469 Fasciclin domain N646_3318 PF18416 N-acetylglucosamine binding protein domain 2 N646_3318 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading N646_3319 PF01734 Patatin-like phospholipase N646_3320 PF01914 MarC family integral membrane protein N646_3321 PF00881 Nitroreductase family N646_3324 PF18412 Outer-membrane lipoprotein Wza C-terminal domain N646_3324 PF10531 SLBB domain N646_3324 PF02563 Polysaccharide biosynthesis/export protein N646_3325 PF01451 Low molecular weight phosphotyrosine protein phosphatase N646_3326 PF13614 AAA domain N646_3326 PF13807 G-rich domain on putative tyrosine kinase N646_3326 PF02706 Chain length determinant protein N646_3328 PF08803 Putative mono-oxygenase ydhR N646_3329 PF03466 LysR substrate binding domain N646_3329 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3331 PF00375 Sodium:dicarboxylate symporter family N646_3332 PF06803 Protein of unknown function (DUF1232) N646_3334 PF07687 Peptidase dimerisation domain N646_3334 PF01546 Peptidase family M20/M25/M40 N646_3335 PF07670 Nucleoside recognition N646_3336 PF07670 Nucleoside recognition N646_3339 PF00128 Alpha amylase, catalytic domain N646_3340 PF00912 Transglycosylase N646_3341 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N646_3341 PF00128 Alpha amylase, catalytic domain N646_3341 PF02806 Alpha amylase, C-terminal all-beta domain N646_3342 PF02446 4-alpha-glucanotransferase N646_3343 PF00343 Carbohydrate phosphorylase N646_3344 PF17874 MalT-like TPR region N646_3344 PF00196 Bacterial regulatory proteins, luxR family N646_3347 PF02630 SCO1/SenC N646_3348 PF02378 Phosphotransferase system, EIIC N646_3348 PF00367 phosphotransferase system, EIIB N646_3349 PF03193 RsgA GTPase N646_3350 PF00375 Sodium:dicarboxylate symporter family N646_3351 PF08543 Phosphomethylpyrimidine kinase N646_3354 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N646_3354 PF17967 Pullulanase N2 domain N646_3354 PF18494 Pullulanase Ins domain N646_3354 PF03714 Bacterial pullanase-associated domain N646_3354 PF11852 Domain of unknown function (DUF3372) N646_3355 PF04231 Endonuclease I N646_3356 PF16657 Maltogenic Amylase, C-terminal domain N646_3356 PF00128 Alpha amylase, catalytic domain N646_3356 PF02903 Alpha amylase, N-terminal ig-like domain N646_3359 PF02264 LamB porin N646_3360 PF00128 Alpha amylase, catalytic domain N646_3360 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) N646_3361 PF03313 Serine dehydratase alpha chain N646_3361 PF03315 Serine dehydratase beta chain N646_3362 PF00474 Sodium:solute symporter family N646_3363 PF07690 Major Facilitator Superfamily N646_3366 PF12697 Alpha/beta hydrolase family N646_3370 PF03328 HpcH/HpaI aldolase/citrate lyase family N646_3371 PF00356 Bacterial regulatory proteins, lacI family N646_3372 PF03480 Bacterial extracellular solute-binding protein, family 7 N646_3374 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component N646_3377 PF00474 Sodium:solute symporter family N646_3378 PF00356 Bacterial regulatory proteins, lacI family N646_3379 PF00239 Resolvase, N terminal domain N646_3379 PF02796 Helix-turn-helix domain of resolvase N646_3380 PF07690 Major Facilitator Superfamily N646_3383 PF04225 Opacity-associated protein A LysM-like domain N646_3383 PF01551 Peptidase family M23 N646_3385 PF05193 Peptidase M16 inactive domain N646_3385 PF00675 Insulinase (Peptidase family M16) N646_3386 PF00672 HAMP domain N646_3386 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_3386 PF17200 Single Cache domain 2 N646_3387 PF00005 ABC transporter N646_3388 PF01032 FecCD transport family N646_3389 PF01032 FecCD transport family N646_3390 PF01497 Periplasmic binding protein N646_3391 PF07660 Secretin and TonB N terminus short domain N646_3391 PF00593 TonB dependent receptor N646_3391 PF07715 TonB-dependent Receptor Plug Domain N646_3392 PF00593 TonB dependent receptor N646_3392 PF07715 TonB-dependent Receptor Plug Domain N646_3393 PF00206 Lyase N646_3393 PF02655 ATP-grasp domain N646_3394 PF04183 IucA / IucC family N646_3394 PF06276 Ferric iron reductase FhuF-like transporter N646_3396 PF04183 IucA / IucC family N646_3396 PF06276 Ferric iron reductase FhuF-like transporter N646_3397 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain N646_3397 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N646_3401 PF00005 ABC transporter N646_3409 PF02566 OsmC-like protein N646_3410 PF01047 MarR family N646_3412 PF00578 AhpC/TSA family N646_3412 PF10417 C-terminal domain of 1-Cys peroxiredoxin N646_3413 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_3413 PF13192 Thioredoxin domain N646_3416 PF03466 LysR substrate binding domain N646_3416 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3417 PF12833 Helix-turn-helix domain N646_3417 PF01965 DJ-1/PfpI family N646_3418 PF04542 Sigma-70 region 2 N646_3418 PF08281 Sigma-70, region 4 N646_3422 PF03473 MOSC domain N646_3422 PF03475 3-alpha domain N646_3423 PF00271 Helicase conserved C-terminal domain N646_3423 PF00270 DEAD/DEAH box helicase N646_3426 PF00005 ABC transporter N646_3426 PF00664 ABC transporter transmembrane region N646_3429 PF01037 Lrp/AsnC ligand binding domain N646_3435 PF00474 Sodium:solute symporter family N646_3437 PF18327 Proline utilization A proline dehydrogenase N-terminal domain N646_3437 PF14850 DNA-binding domain of Proline dehydrogenase N646_3437 PF01619 Proline dehydrogenase N646_3437 PF00171 Aldehyde dehydrogenase family N646_3438 PF12833 Helix-turn-helix domain N646_3440 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region N646_3440 PF01243 Pyridoxamine 5'-phosphate oxidase N646_3441 PF02743 Cache domain N646_3441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3441 PF00512 His Kinase A (phospho-acceptor) domain N646_3442 PF00158 Sigma-54 interaction domain N646_3442 PF00072 Response regulator receiver domain N646_3442 PF02954 Bacterial regulatory protein, Fis family N646_3443 PF00529 HlyD membrane-fusion protein of T1SS N646_3446 PF00664 ABC transporter transmembrane region N646_3446 PF03412 Peptidase C39 family N646_3446 PF00005 ABC transporter N646_3451 PF03358 NADPH-dependent FMN reductase N646_3452 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_3453 PF00246 Zinc carboxypeptidase N646_3454 PF01380 SIS domain N646_3454 PF01418 Helix-turn-helix domain, rpiR family N646_3455 PF01380 SIS domain N646_3456 PF02378 Phosphotransferase system, EIIC N646_3456 PF00367 phosphotransferase system, EIIB N646_3457 PF00267 Gram-negative porin N646_3458 PF03575 Peptidase family S51 N646_3460 PF00132 Bacterial transferase hexapeptide (six repeats) N646_3462 PF13718 GNAT acetyltransferase 2 N646_3462 PF05127 Helicase N646_3463 PF02195 ParB-like nuclease domain N646_3463 PF08775 ParB family N646_3464 PF13614 AAA domain N646_3464 PF18607 ParA helix turn helix domain N646_3467 PF00005 ABC transporter N646_3467 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_3468 PF00005 ABC transporter N646_3468 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_3470 PF00925 GTP cyclohydrolase II N646_3470 PF08719 Domain of unknown function (DUF1768) N646_3472 PF17149 Periplasmic sensor domain found in signal transduction proteins N646_3472 PF00672 HAMP domain N646_3472 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3472 PF01627 Hpt domain N646_3472 PF00512 His Kinase A (phospho-acceptor) domain N646_3472 PF00072 Response regulator receiver domain N646_3474 PF01709 Transcriptional regulator N646_3475 PF01098 Cell cycle protein N646_3477 PF00005 ABC transporter N646_3481 PF07694 5TMR of 5TMR-LYT N646_3481 PF13492 GAF domain N646_3481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3481 PF06580 Histidine kinase N646_3482 PF04397 LytTr DNA-binding domain N646_3482 PF00072 Response regulator receiver domain N646_3483 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD N646_3484 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_3484 PF00672 HAMP domain N646_3484 PF17200 Single Cache domain 2 N646_3487 PF03616 Sodium/glutamate symporter N646_3489 PF00005 ABC transporter N646_3491 PF03616 Sodium/glutamate symporter N646_3493 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase N646_3496 PF03466 LysR substrate binding domain N646_3496 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3497 PF02678 Pirin N646_3497 PF17954 Quercetinase C-terminal cupin domain N646_3498 PF07681 DoxX N646_3500 PF02805 Metal binding domain of Ada N646_3500 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N646_3500 PF12833 Helix-turn-helix domain N646_3500 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain N646_3501 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain N646_3501 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain N646_3503 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 N646_3505 PF03600 Citrate transporter N646_3509 PF12697 Alpha/beta hydrolase family N646_3510 PF00704 Glycosyl hydrolases family 18 N646_3510 PF08329 Chitinase A, N-terminal domain N646_3512 PF06865 Pyrimidine/purine nucleoside phosphorylase N646_3514 PF00563 EAL domain N646_3514 PF00990 Diguanylate cyclase, GGDEF domain N646_3515 PF01554 MatE N646_3516 PF00849 RNA pseudouridylate synthase N646_3519 PF03466 LysR substrate binding domain N646_3519 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3522 PF00990 Diguanylate cyclase, GGDEF domain N646_3522 PF17152 Periplasmic sensor domain N646_3524 PF00756 Putative esterase N646_3525 PF08240 Alcohol dehydrogenase GroES-like domain N646_3525 PF00107 Zinc-binding dehydrogenase N646_3526 PF00797 N-acetyltransferase N646_3527 PF03466 LysR substrate binding domain N646_3527 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3528 PF04954 Siderophore-interacting protein N646_3528 PF08021 Siderophore-interacting FAD-binding domain N646_3529 PF01810 LysE type translocator N646_3530 PF01037 Lrp/AsnC ligand binding domain N646_3531 PF18416 N-acetylglucosamine binding protein domain 2 N646_3531 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading N646_3534 PF13599 Pentapeptide repeats (9 copies) N646_3536 PF03922 OmpW family N646_3537 PF13533 Biotin-lipoyl like N646_3538 PF07690 Major Facilitator Superfamily N646_3540 PF12706 Beta-lactamase superfamily domain N646_3541 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N646_3548 PF13556 PucR C-terminal helix-turn-helix domain N646_3548 PF17853 GGDEF-like domain N646_3548 PF05651 Putative sugar diacid recognition N646_3549 PF02447 GntP family permease N646_3550 PF02595 Glycerate kinase family N646_3551 PF00155 Aminotransferase class I and II N646_3551 PF00392 Bacterial regulatory proteins, gntR family N646_3555 PF00583 Acetyltransferase (GNAT) family N646_3559 PF13302 Acetyltransferase (GNAT) domain N646_3560 PF03264 NapC/NirT cytochrome c family, N-terminal region N646_3561 PF18364 Molybdopterin oxidoreductase N-terminal domain N646_3561 PF00384 Molybdopterin oxidoreductase N646_3561 PF01568 Molydopterin dinucleotide binding domain N646_3563 PF02581 Thiamine monophosphate synthase N646_3564 PF02110 Hydroxyethylthiazole kinase family N646_3565 PF03070 TENA/THI-4/PQQC family N646_3566 PF09084 NMT1/THI5 like N646_3567 PF00528 Binding-protein-dependent transport system inner membrane component N646_3568 PF00005 ABC transporter N646_3569 PF08543 Phosphomethylpyrimidine kinase N646_3570 PF01523 Putative modulator of DNA gyrase N646_3571 PF01523 Putative modulator of DNA gyrase N646_3572 PF04013 Putative SAM-dependent RNA methyltransferase N646_3578 PF10928 Protein of unknown function (DUF2810) N646_3579 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain N646_3579 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain N646_3581 PF03009 Glycerophosphoryl diester phosphodiesterase family N646_3582 PF00072 Response regulator receiver domain N646_3582 PF00486 Transcriptional regulatory protein, C terminal N646_3583 PF16750 Sensor domain of 2-component histidine kinase N646_3583 PF00512 His Kinase A (phospho-acceptor) domain N646_3583 PF00672 HAMP domain N646_3583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3584 PF07715 TonB-dependent Receptor Plug Domain N646_3584 PF00593 TonB dependent receptor N646_3586 PF01618 MotA/TolQ/ExbB proton channel family N646_3587 PF01618 MotA/TolQ/ExbB proton channel family N646_3588 PF02472 Biopolymer transport protein ExbD/TolR N646_3596 PF01297 Zinc-uptake complex component A periplasmic N646_3597 PF00005 ABC transporter N646_3598 PF00950 ABC 3 transport family N646_3601 PF00326 Prolyl oligopeptidase family N646_3601 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain N646_3602 PF07690 Major Facilitator Superfamily N646_3603 PF00491 Arginase family N646_3604 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain N646_3604 PF17810 Arginine decarboxylase helical bundle domain N646_3604 PF17944 Arginine decarboxylase C-terminal helical extension N646_3605 PF00753 Metallo-beta-lactamase superfamily N646_3606 PF18030 RimK PreATP-grasp domain N646_3606 PF08443 RimK-like ATP-grasp domain N646_3607 PF18030 RimK PreATP-grasp domain N646_3607 PF08443 RimK-like ATP-grasp domain N646_3609 PF12706 Beta-lactamase superfamily domain N646_3611 PF03466 LysR substrate binding domain N646_3611 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3614 PF00232 Glycosyl hydrolase family 1 N646_3615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3615 PF00512 His Kinase A (phospho-acceptor) domain N646_3617 PF00158 Sigma-54 interaction domain N646_3617 PF00072 Response regulator receiver domain N646_3617 PF02954 Bacterial regulatory protein, Fis family N646_3618 PF00990 Diguanylate cyclase, GGDEF domain N646_3619 PF05525 Branched-chain amino acid transport protein N646_3623 PF01266 FAD dependent oxidoreductase N646_3626 PF02322 Cytochrome bd terminal oxidase subunit II N646_3627 PF01654 Cytochrome bd terminal oxidase subunit I N646_3628 PF03116 NQR2, RnfD, RnfE family N646_3629 PF01212 Beta-eliminating lyase N646_3632 PF07670 Nucleoside recognition N646_3632 PF01773 Na+ dependent nucleoside transporter N-terminus N646_3632 PF07662 Na+ dependent nucleoside transporter C-terminus N646_3635 PF00990 Diguanylate cyclase, GGDEF domain N646_3635 PF05230 MASE2 domain N646_3638 PF00990 Diguanylate cyclase, GGDEF domain N646_3639 PF03441 FAD binding domain of DNA photolyase N646_3639 PF00875 DNA photolyase N646_3640 PF04244 Deoxyribodipyrimidine photo-lyase-related protein N646_3642 PF01625 Peptide methionine sulfoxide reductase N646_3642 PF01641 SelR domain N646_3643 PF02566 OsmC-like protein N646_3644 PF12464 Maltose acetyltransferase N646_3644 PF14602 Hexapeptide repeat of succinyl-transferase N646_3651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3651 PF03466 LysR substrate binding domain N646_3652 PF13419 Haloacid dehalogenase-like hydrolase N646_3655 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) N646_3656 PF00194 Eukaryotic-type carbonic anhydrase N646_3657 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N646_3659 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_3660 PF00005 ABC transporter N646_3660 PF02687 FtsX-like permease family N646_3660 PF12704 MacB-like periplasmic core domain N646_3661 PF02321 Outer membrane efflux protein N646_3663 PF00440 Bacterial regulatory proteins, tetR family N646_3664 PF00657 GDSL-like Lipase/Acylhydrolase N646_3667 PF13419 Haloacid dehalogenase-like hydrolase N646_3669 PF00266 Aminotransferase class-V N646_3671 PF00005 ABC transporter N646_3672 PF00528 Binding-protein-dependent transport system inner membrane component N646_3673 PF00392 Bacterial regulatory proteins, gntR family N646_3673 PF07702 UTRA domain N646_3676 PF04393 Protein of unknown function (DUF535) N646_3679 PF01266 FAD dependent oxidoreductase N646_3680 PF00246 Zinc carboxypeptidase N646_3680 PF18027 Cytosolic carboxypeptidase N-terminal domain N646_3682 PF00691 OmpA family N646_3682 PF01389 OmpA-like transmembrane domain N646_3683 PF03466 LysR substrate binding domain N646_3683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3684 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3684 PF03466 LysR substrate binding domain N646_3686 PF03315 Serine dehydratase beta chain N646_3686 PF03313 Serine dehydratase alpha chain N646_3690 PF00133 tRNA synthetases class I (I, L, M and V) N646_3690 PF08264 Anticodon-binding domain of tRNA N646_3691 PF01476 LysM domain N646_3691 PF01464 Transglycosylase SLT domain N646_3695 PF00460 Flagella basal body rod protein N646_3696 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_3696 PF00460 Flagella basal body rod protein N646_3697 PF03963 Flagellar hook capping protein - N-terminal region N646_3697 PF13860 FlgD Ig-like domain N646_3697 PF13861 FlgD Tudor-like domain N646_3698 PF00460 Flagella basal body rod protein N646_3698 PF07559 Flagellar basal body protein FlaE N646_3698 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_3699 PF00460 Flagella basal body rod protein N646_3699 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_3700 PF00460 Flagella basal body rod protein N646_3700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_3701 PF02107 Flagellar L-ring protein N646_3702 PF02119 Flagellar P-ring protein N646_3703 PF10135 Rod binding protein N646_3703 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase N646_3704 PF06429 Flagellar basal body rod FlgEFG protein C-terminal N646_3704 PF00460 Flagella basal body rod protein N646_3705 PF00669 Bacterial flagellin N-terminal helical region N646_3709 PF01070 FMN-dependent dehydrogenase N646_3713 PF00581 Rhodanese-like domain N646_3714 PF00166 Chaperonin 10 Kd subunit N646_3715 PF00118 TCP-1/cpn60 chaperonin family N646_3717 PF01810 LysE type translocator N646_3718 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3718 PF03466 LysR substrate binding domain N646_3721 PF00440 Bacterial regulatory proteins, tetR family N646_3721 PF08359 YsiA-like protein, C-terminal region N646_3722 PF12833 Helix-turn-helix domain N646_3724 PF06751 Ethanolamine ammonia lyase large subunit (EutB) N646_3725 PF05985 Ethanolamine ammonia-lyase light chain (EutC) N646_3726 PF13520 Amino acid permease N646_3727 PF03060 Nitronate monooxygenase N646_3728 PF01641 SelR domain N646_3728 PF01625 Peptide methionine sulfoxide reductase N646_3729 PF08220 DeoR-like helix-turn-helix domain N646_3729 PF00455 DeoR C terminal sensor domain N646_3732 PF00857 Isochorismatase family N646_3735 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain N646_3735 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family N646_3740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3740 PF03466 LysR substrate binding domain N646_3744 PF06629 MltA-interacting protein MipA N646_3745 PF04170 NlpE N-terminal domain N646_3745 PF17185 NlpE C-terminal OB domain N646_3746 PF00005 ABC transporter N646_3746 PF00571 CBS domain N646_3747 PF00528 Binding-protein-dependent transport system inner membrane component N646_3749 PF02001 Protein of unknown function DUF134 N646_3754 PF03144 Elongation factor Tu domain 2 N646_3754 PF03764 Elongation factor G, domain IV N646_3754 PF14492 Elongation Factor G, domain II N646_3754 PF00679 Elongation factor G C-terminus N646_3754 PF00009 Elongation factor Tu GTP binding domain N646_3755 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain N646_3755 PF13378 Enolase C-terminal domain-like N646_3757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3757 PF03466 LysR substrate binding domain N646_3759 PF09278 MerR, DNA binding N646_3759 PF00376 MerR family regulatory protein N646_3763 PF00398 Ribosomal RNA adenine dimethylase N646_3764 PF13091 PLD-like domain N646_3766 PF00873 AcrB/AcrD/AcrF family N646_3770 PF00873 AcrB/AcrD/AcrF family N646_3774 PF08402 TOBE domain N646_3774 PF00005 ABC transporter N646_3779 PF07702 UTRA domain N646_3779 PF00392 Bacterial regulatory proteins, gntR family N646_3780 PF02028 BCCT, betaine/carnitine/choline family transporter N646_3781 PF00703 Glycosyl hydrolases family 2 N646_3781 PF02837 Glycosyl hydrolases family 2, sugar binding domain N646_3781 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 N646_3781 PF02836 Glycosyl hydrolases family 2, TIM barrel domain N646_3784 PF13416 Bacterial extracellular solute-binding protein N646_3785 PF00579 tRNA synthetases class I (W and Y) N646_3786 PF00196 Bacterial regulatory proteins, luxR family N646_3786 PF00072 Response regulator receiver domain N646_3788 PF02896 PEP-utilising enzyme, TIM barrel domain N646_3788 PF00391 PEP-utilising enzyme, mobile domain N646_3788 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain N646_3789 PF03618 Kinase/pyrophosphorylase N646_3790 PF00710 Asparaginase, N-terminal N646_3790 PF17763 Glutaminase/Asparaginase C-terminal domain N646_3792 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3792 PF03466 LysR substrate binding domain N646_3795 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) N646_3797 PF00202 Aminotransferase class-III N646_3798 PF00171 Aldehyde dehydrogenase family N646_3799 PF01037 Lrp/AsnC ligand binding domain N646_3800 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family N646_3801 PF00557 Metallopeptidase family M24 N646_3801 PF01321 Creatinase/Prolidase N-terminal domain N646_3802 PF00155 Aminotransferase class I and II N646_3802 PF00392 Bacterial regulatory proteins, gntR family N646_3806 PF08240 Alcohol dehydrogenase GroES-like domain N646_3806 PF00107 Zinc-binding dehydrogenase N646_3807 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N646_3809 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3809 PF03466 LysR substrate binding domain N646_3810 PF03466 LysR substrate binding domain N646_3810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3812 PF00271 Helicase conserved C-terminal domain N646_3812 PF00270 DEAD/DEAH box helicase N646_3817 PF00155 Aminotransferase class I and II N646_3818 PF12833 Helix-turn-helix domain N646_3818 PF01497 Periplasmic binding protein N646_3819 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3819 PF03466 LysR substrate binding domain N646_3820 PF00106 short chain dehydrogenase N646_3827 PF00082 Subtilase family N646_3827 PF04151 Bacterial pre-peptidase C-terminal domain N646_3827 PF05922 Peptidase inhibitor I9 N646_3828 PF03466 LysR substrate binding domain N646_3828 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3829 PF07715 TonB-dependent Receptor Plug Domain N646_3829 PF00593 TonB dependent receptor N646_3831 PF11471 Maltoporin periplasmic N-terminal extension N646_3831 PF02264 LamB porin N646_3832 PF00356 Bacterial regulatory proteins, lacI family N646_3833 PF02378 Phosphotransferase system, EIIC N646_3833 PF00367 phosphotransferase system, EIIB N646_3834 PF00294 pfkB family carbohydrate kinase N646_3835 PF00251 Glycosyl hydrolases family 32 N-terminal domain N646_3835 PF08244 Glycosyl hydrolases family 32 C terminal N646_3836 PF02798 Glutathione S-transferase, N-terminal domain N646_3837 PF07943 Penicillin-binding protein 5, C-terminal domain N646_3837 PF00768 D-alanyl-D-alanine carboxypeptidase N646_3839 PF00462 Glutaredoxin N646_3839 PF08534 Redoxin N646_3840 PF00962 Adenosine/AMP deaminase N646_3843 PF00313 'Cold-shock' DNA-binding domain N646_3844 PF05726 Pirin C-terminal cupin domain N646_3844 PF02678 Pirin N646_3845 PF01734 Patatin-like phospholipase N646_3847 PF01408 Oxidoreductase family, NAD-binding Rossmann fold N646_3848 PF00884 Sulfatase N646_3848 PF08019 Phosphoethanolamine transferase EptA/EptB N646_3849 PF01219 Prokaryotic diacylglycerol kinase N646_3851 PF00672 HAMP domain N646_3851 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3851 PF00512 His Kinase A (phospho-acceptor) domain N646_3851 PF16527 Two-component sensor protein CpxA, periplasmic domain N646_3852 PF00072 Response regulator receiver domain N646_3852 PF00486 Transcriptional regulatory protein, C terminal N646_3855 PF01323 DSBA-like thioredoxin domain N646_3858 PF00255 Glutathione peroxidase N646_3859 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase N646_3861 PF07690 Major Facilitator Superfamily N646_3863 PF01966 HD domain N646_3864 PF07969 Amidohydrolase family N646_3865 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin N646_3867 PF03448 MgtE intracellular N domain N646_3867 PF01769 Divalent cation transporter N646_3867 PF00571 CBS domain N646_3868 PF03109 ABC1 family N646_3869 PF00529 HlyD membrane-fusion protein of T1SS N646_3869 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_3871 PF12833 Helix-turn-helix domain N646_3871 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term N646_3875 PF00486 Transcriptional regulatory protein, C terminal N646_3875 PF00072 Response regulator receiver domain N646_3876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3876 PF16527 Two-component sensor protein CpxA, periplasmic domain N646_3876 PF00672 HAMP domain N646_3876 PF00512 His Kinase A (phospho-acceptor) domain N646_3878 PF00392 Bacterial regulatory proteins, gntR family N646_3878 PF00155 Aminotransferase class I and II N646_3879 PF13520 Amino acid permease N646_3881 PF03466 LysR substrate binding domain N646_3881 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_3885 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain N646_3885 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain N646_3886 PF01627 Hpt domain N646_3886 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3886 PF00672 HAMP domain N646_3886 PF00072 Response regulator receiver domain N646_3886 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) N646_3886 PF00512 His Kinase A (phospho-acceptor) domain N646_3887 PF01554 MatE N646_3888 PF04363 Protein of unknown function (DUF496) N646_3890 PF04337 Protein of unknown function, DUF480 N646_3891 PF01541 GIY-YIG catalytic domain N646_3892 PF13407 Periplasmic binding protein domain N646_3893 PF00072 Response regulator receiver domain N646_3893 PF09308 LuxQ, periplasmic N646_3893 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3893 PF00512 His Kinase A (phospho-acceptor) domain N646_3894 PF01047 MarR family N646_3895 PF00529 HlyD membrane-fusion protein of T1SS N646_3895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_3899 PF01037 Lrp/AsnC ligand binding domain N646_3904 PF13721 SecD export protein N-terminal TM region N646_3904 PF02355 Protein export membrane protein N646_3904 PF07549 SecD/SecF GG Motif N646_3905 PF07549 SecD/SecF GG Motif N646_3905 PF02355 Protein export membrane protein N646_3907 PF01810 LysE type translocator N646_3908 PF00106 short chain dehydrogenase N646_3909 PF00108 Thiolase, N-terminal domain N646_3909 PF02803 Thiolase, C-terminal domain N646_3911 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus N646_3913 PF03264 NapC/NirT cytochrome c family, N-terminal region N646_3914 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) N646_3915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N646_3915 PF00384 Molybdopterin oxidoreductase N646_3915 PF01568 Molydopterin dinucleotide binding domain N646_3917 PF13187 4Fe-4S dicluster domain N646_3917 PF12838 4Fe-4S dicluster domain N646_3918 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term N646_3918 PF07730 Histidine kinase N646_3918 PF00672 HAMP domain N646_3918 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_3919 PF00072 Response regulator receiver domain N646_3919 PF00196 Bacterial regulatory proteins, luxR family N646_3922 PF01546 Peptidase family M20/M25/M40 N646_3922 PF07687 Peptidase dimerisation domain N646_3923 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N646_3924 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_3925 PF00873 AcrB/AcrD/AcrF family N646_3926 PF00672 HAMP domain N646_3926 PF12729 Four helix bundle sensory module for signal transduction N646_3926 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_3927 PF00472 RF-1 domain N646_3928 PF13419 Haloacid dehalogenase-like hydrolase N646_3929 PF00691 OmpA family N646_3929 PF01389 OmpA-like transmembrane domain N646_3930 PF00793 DAHP synthetase I family N646_3931 PF07690 Major Facilitator Superfamily N646_3932 PF12729 Four helix bundle sensory module for signal transduction N646_3932 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_3932 PF00672 HAMP domain N646_3933 PF00456 Transketolase, thiamine diphosphate binding domain N646_3933 PF02780 Transketolase, C-terminal domain N646_3933 PF02779 Transketolase, pyrimidine binding domain N646_3934 PF00923 Transaldolase/Fructose-6-phosphate aldolase N646_3938 PF00581 Rhodanese-like domain N646_3941 PF00899 ThiF family N646_3942 PF00994 Probable molybdopterin binding domain N646_3942 PF03454 MoeA C-terminal region (domain IV) N646_3942 PF03453 MoeA N-terminal region (domain I and II) N646_3943 PF01227 GTP cyclohydrolase I N646_3945 PF00654 Voltage gated chloride channel N646_3950 PF00248 Aldo/keto reductase family N646_3951 PF00072 Response regulator receiver domain N646_3953 PF03853 YjeF-related protein N-terminus N646_3953 PF01256 Carbohydrate kinase N646_3954 PF00478 IMP dehydrogenase / GMP reductase domain N646_3955 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family N646_3956 PF01565 FAD binding domain N646_3956 PF08031 Berberine and berberine like N646_3962 PF00551 Formyl transferase N646_3962 PF02911 Formyl transferase, C-terminal domain N646_3962 PF01370 NAD dependent epimerase/dehydratase family N646_3967 PF00392 Bacterial regulatory proteins, gntR family N646_3968 PF00144 Beta-lactamase N646_3969 PF00132 Bacterial transferase hexapeptide (six repeats) N646_3970 PF08525 Opacity-associated protein A N-terminal motif N646_3970 PF01551 Peptidase family M23 N646_3970 PF01476 LysM domain N646_3976 PF00072 Response regulator receiver domain N646_3976 PF00158 Sigma-54 interaction domain N646_3976 PF02954 Bacterial regulatory protein, Fis family N646_3977 PF10431 C-terminal, D2-small domain, of ClpB protein N646_3977 PF00004 ATPase family associated with various cellular activities (AAA) N646_3977 PF17871 AAA lid domain N646_3977 PF07724 AAA domain (Cdc48 subfamily) N646_3978 PF05638 Type VI secretion system effector, Hcp N646_3979 PF04717 Type VI secretion system, phage-baseplate injector N646_3984 PF00069 Protein kinase domain N646_3991 PF01037 Lrp/AsnC ligand binding domain N646_4004 PF07690 Major Facilitator Superfamily N646_4006 PF03466 LysR substrate binding domain N646_4006 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4007 PF00106 short chain dehydrogenase N646_4008 PF00582 Universal stress protein family N646_4010 PF13244 Domain of unknown function (DUF4040) N646_4010 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus N646_4010 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter N646_4010 PF00361 Proton-conducting membrane transporter N646_4014 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) N646_4015 PF03334 Na+/H+ antiporter subunit N646_4016 PF07702 UTRA domain N646_4016 PF00392 Bacterial regulatory proteins, gntR family N646_4017 PF02056 Family 4 glycosyl hydrolase N646_4017 PF11975 Family 4 glycosyl hydrolase C-terminal domain N646_4018 PF02378 Phosphotransferase system, EIIC N646_4018 PF00367 phosphotransferase system, EIIB N646_4019 PF13193 AMP-binding enzyme C-terminal domain N646_4019 PF00501 AMP-binding enzyme N646_4020 PF00766 Electron transfer flavoprotein FAD-binding domain N646_4020 PF01012 Electron transfer flavoprotein domain N646_4021 PF01012 Electron transfer flavoprotein domain N646_4024 PF12399 Branched-chain amino acid ATP-binding cassette transporter N646_4024 PF00005 ABC transporter N646_4025 PF00501 AMP-binding enzyme N646_4029 PF00005 ABC transporter N646_4030 PF14535 AMP-binding enzyme C-terminal domain N646_4030 PF00501 AMP-binding enzyme N646_4031 PF05724 Thiopurine S-methyltransferase (TPMT) N646_4032 PF00106 short chain dehydrogenase N646_4033 PF00205 Thiamine pyrophosphate enzyme, central domain N646_4033 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain N646_4033 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain N646_4034 PF03306 Alpha-acetolactate decarboxylase N646_4035 PF03466 LysR substrate binding domain N646_4035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4036 PF13419 Haloacid dehalogenase-like hydrolase N646_4039 PF02322 Cytochrome bd terminal oxidase subunit II N646_4040 PF01654 Cytochrome bd terminal oxidase subunit I N646_4041 PF00392 Bacterial regulatory proteins, gntR family N646_4041 PF00155 Aminotransferase class I and II N646_4042 PF12464 Maltose acetyltransferase N646_4042 PF14602 Hexapeptide repeat of succinyl-transferase N646_4044 PF12795 Mechanosensitive ion channel porin domain N646_4044 PF12794 Mechanosensitive ion channel inner membrane domain 1 N646_4044 PF00924 Mechanosensitive ion channel N646_4046 PF00682 HMGL-like N646_4047 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain N646_4047 PF00289 Biotin carboxylase, N-terminal domain N646_4047 PF02785 Biotin carboxylase C-terminal domain N646_4048 PF00378 Enoyl-CoA hydratase/isomerase N646_4049 PF01039 Carboxyl transferase domain N646_4050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N646_4050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N646_4050 PF02770 Acyl-CoA dehydrogenase, middle domain N646_4051 PF00376 MerR family regulatory protein N646_4051 PF09278 MerR, DNA binding N646_4052 PF02803 Thiolase, C-terminal domain N646_4052 PF00108 Thiolase, N-terminal domain N646_4053 PF00171 Aldehyde dehydrogenase family N646_4054 PF02770 Acyl-CoA dehydrogenase, middle domain N646_4054 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N646_4054 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N646_4055 PF00378 Enoyl-CoA hydratase/isomerase N646_4057 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N646_4057 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N646_4059 PF00990 Diguanylate cyclase, GGDEF domain N646_4059 PF00072 Response regulator receiver domain N646_4060 PF13977 BetI-type transcriptional repressor, C-terminal N646_4060 PF00440 Bacterial regulatory proteins, tetR family N646_4061 PF00171 Aldehyde dehydrogenase family N646_4062 PF00732 GMC oxidoreductase N646_4062 PF05199 GMC oxidoreductase N646_4063 PF04069 Substrate binding domain of ABC-type glycine betaine transport system N646_4064 PF00528 Binding-protein-dependent transport system inner membrane component N646_4065 PF00571 CBS domain N646_4065 PF00005 ABC transporter N646_4067 PF00881 Nitroreductase family N646_4070 PF01145 SPFH domain / Band 7 family N646_4070 PF16200 C-terminal region of band_7 N646_4073 PF03150 Di-haem cytochrome c peroxidase N646_4073 PF00034 Cytochrome c N646_4074 PF09308 LuxQ, periplasmic N646_4074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_4074 PF00072 Response regulator receiver domain N646_4074 PF00512 His Kinase A (phospho-acceptor) domain N646_4076 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain N646_4076 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase N646_4079 PF04116 Fatty acid hydroxylase superfamily N646_4087 PF00990 Diguanylate cyclase, GGDEF domain N646_4087 PF00563 EAL domain N646_4088 PF05025 RbsD / FucU transport protein family N646_4089 PF00005 ABC transporter N646_4090 PF02653 Branched-chain amino acid transport system / permease component N646_4091 PF13407 Periplasmic binding protein domain N646_4092 PF00294 pfkB family carbohydrate kinase N646_4093 PF00356 Bacterial regulatory proteins, lacI family N646_4095 PF04973 Nicotinamide mononucleotide transporter N646_4096 PF01048 Phosphorylase superfamily N646_4098 PF01497 Periplasmic binding protein N646_4099 PF01032 FecCD transport family N646_4100 PF01032 FecCD transport family N646_4101 PF00005 ABC transporter N646_4102 PF13411 MerR HTH family regulatory protein N646_4104 PF00593 TonB dependent receptor N646_4104 PF07715 TonB-dependent Receptor Plug Domain N646_4110 PF12805 FUSC-like inner membrane protein yccS N646_4111 PF00580 UvrD/REP helicase N-terminal domain N646_4111 PF13361 UvrD-like helicase C-terminal domain N646_4111 PF12462 DNA helicase IV / RNA helicase N terminal N646_4112 PF02142 MGS-like domain N646_4113 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N646_4114 PF00672 HAMP domain N646_4114 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_4114 PF00512 His Kinase A (phospho-acceptor) domain N646_4114 PF01627 Hpt domain N646_4114 PF00072 Response regulator receiver domain N646_4118 PF00486 Transcriptional regulatory protein, C terminal N646_4118 PF00072 Response regulator receiver domain N646_4119 PF00884 Sulfatase N646_4120 PF03466 LysR substrate binding domain N646_4120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4121 PF00884 Sulfatase N646_4121 PF16385 Domain of unknown function N646_4122 PF04055 Radical SAM superfamily N646_4122 PF13186 Iron-sulfur cluster-binding domain N646_4123 PF07726 ATPase family associated with various cellular activities (AAA) N646_4123 PF17863 AAA lid domain N646_4126 PF00092 von Willebrand factor type A domain N646_4129 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region N646_4130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4130 PF03466 LysR substrate binding domain N646_4131 PF00781 Diacylglycerol kinase catalytic domain N646_4132 PF04076 Bacterial OB fold (BOF) protein N646_4134 PF08774 VRR-NUC domain N646_4134 PF18081 Fanconi anemia-associated nuclease SAP domain N646_4137 PF03606 C4-dicarboxylate anaerobic carrier N646_4139 PF00583 Acetyltransferase (GNAT) family N646_4139 PF00814 Glycoprotease family N646_4141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_4141 PF00072 Response regulator receiver domain N646_4142 PF00155 Aminotransferase class I and II N646_4143 PF01926 50S ribosome-binding GTPase N646_4144 PF00512 His Kinase A (phospho-acceptor) domain N646_4144 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_4144 PF09456 RcsC Alpha-Beta-Loop (ABL) N646_4144 PF00072 Response regulator receiver domain N646_4145 PF03707 Bacterial signalling protein N terminal repeat N646_4145 PF13188 PAS domain N646_4145 PF00563 EAL domain N646_4145 PF00990 Diguanylate cyclase, GGDEF domain N646_4146 PF00072 Response regulator receiver domain N646_4146 PF00196 Bacterial regulatory proteins, luxR family N646_4147 PF00990 Diguanylate cyclase, GGDEF domain N646_4149 PF00196 Bacterial regulatory proteins, luxR family N646_4149 PF00072 Response regulator receiver domain N646_4150 PF01584 CheW-like domain N646_4150 PF00072 Response regulator receiver domain N646_4151 PF07963 Prokaryotic N-terminal methylation motif N646_4151 PF08334 Type II secretion system (T2SS), protein G N646_4153 PF00892 EamA-like transporter family N646_4157 PF00893 Small Multidrug Resistance protein N646_4158 PF00892 EamA-like transporter family N646_4161 PF00171 Aldehyde dehydrogenase family N646_4163 PF13187 4Fe-4S dicluster domain N646_4163 PF01645 Conserved region in glutamate synthase N646_4164 PF00141 Peroxidase N646_4167 PF01757 Acyltransferase family N646_4169 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N646_4170 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N646_4174 PF00571 CBS domain N646_4174 PF01769 Divalent cation transporter N646_4174 PF03448 MgtE intracellular N domain N646_4180 PF01327 Polypeptide deformylase N646_4181 PF09278 MerR, DNA binding N646_4181 PF00376 MerR family regulatory protein N646_4183 PF02253 Phospholipase A1 N646_4187 PF00005 ABC transporter N646_4187 PF00664 ABC transporter transmembrane region N646_4188 PF14579 Helix-hairpin-helix motif N646_4188 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N646_4188 PF11490 DNA polymerase III polC-type N-terminus II N646_4188 PF00929 Exonuclease N646_4188 PF02811 PHP domain N646_4188 PF07733 Bacterial DNA polymerase III alpha NTPase domain N646_4194 PF12833 Helix-turn-helix domain N646_4195 PF02627 Carboxymuconolactone decarboxylase family N646_4196 PF00892 EamA-like transporter family N646_4197 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4197 PF03466 LysR substrate binding domain N646_4198 PF00753 Metallo-beta-lactamase superfamily N646_4198 PF16123 Hydroxyacylglutathione hydrolase C-terminus N646_4199 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily N646_4200 PF02347 Glycine cleavage system P-protein N646_4201 PF01597 Glycine cleavage H-protein N646_4202 PF00464 Serine hydroxymethyltransferase N646_4204 PF08669 Glycine cleavage T-protein C-terminal barrel domain N646_4204 PF01571 Aminomethyltransferase folate-binding domain N646_4208 PF00873 AcrB/AcrD/AcrF family N646_4210 PF02378 Phosphotransferase system, EIIC N646_4210 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit N646_4211 PF00294 pfkB family carbohydrate kinase N646_4212 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 N646_4212 PF00381 PTS HPr component phosphorylation site N646_4214 PF00356 Bacterial regulatory proteins, lacI family N646_4214 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family N646_4217 PF00990 Diguanylate cyclase, GGDEF domain N646_4217 PF00563 EAL domain N646_4217 PF01590 GAF domain N646_4217 PF00989 PAS fold N646_4218 PF00528 Binding-protein-dependent transport system inner membrane component N646_4219 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_4220 PF00528 Binding-protein-dependent transport system inner membrane component N646_4221 PF00005 ABC transporter N646_4223 PF00465 Iron-containing alcohol dehydrogenase N646_4224 PF06719 AraC-type transcriptional regulator N-terminus N646_4224 PF12833 Helix-turn-helix domain N646_4225 PF00704 Glycosyl hydrolases family 18 N646_4225 PF06483 Chitinase C N646_4226 PF00483 Nucleotidyl transferase N646_4227 PF01268 Formate--tetrahydrofolate ligase N646_4228 PF00294 pfkB family carbohydrate kinase N646_4231 PF13419 Haloacid dehalogenase-like hydrolase N646_4232 PF12729 Four helix bundle sensory module for signal transduction N646_4232 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_4232 PF00672 HAMP domain N646_4234 PF04336 Acyl carrier protein phosphodiesterase N646_4235 PF00270 DEAD/DEAH box helicase N646_4235 PF00271 Helicase conserved C-terminal domain N646_4236 PF00271 Helicase conserved C-terminal domain N646_4236 PF00270 DEAD/DEAH box helicase N646_4241 PF01292 Prokaryotic cytochrome b561 N646_4242 PF04264 YceI-like domain N646_4243 PF01226 Formate/nitrite transporter N646_4244 PF03466 LysR substrate binding domain N646_4244 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4245 PF06496 Protein of unknown function (DUF1097) N646_4246 PF11398 Protein of unknown function (DUF2813) N646_4247 PF02872 5'-nucleotidase, C-terminal domain N646_4247 PF00149 Calcineurin-like phosphoesterase N646_4248 PF03741 Integral membrane protein TerC family N646_4252 PF12262 Bacterial virulence factor lipase N-terminal N646_4253 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N646_4256 PF03061 Thioesterase superfamily N646_4258 PF12793 Sugar transport-related sRNA regulator N-term N646_4258 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_4264 PF01556 DnaJ C terminal domain N646_4264 PF00684 DnaJ central domain N646_4264 PF00226 DnaJ domain N646_4266 PF03707 Bacterial signalling protein N terminal repeat N646_4266 PF00563 EAL domain N646_4266 PF13188 PAS domain N646_4266 PF00990 Diguanylate cyclase, GGDEF domain N646_4267 PF07055 Enoyl reductase FAD binding domain N646_4267 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase N646_4267 PF12241 Trans-2-enoyl-CoA reductase catalytic region N646_4268 PF13472 GDSL-like Lipase/Acylhydrolase family N646_4269 PF00005 ABC transporter N646_4272 PF02626 Carboxyltransferase domain, subdomain A and B N646_4273 PF02682 Carboxyltransferase domain, subdomain C and D N646_4274 PF03746 LamB/YcsF family N646_4275 PF08447 PAS fold N646_4275 PF05231 MASE1 N646_4275 PF08448 PAS fold N646_4275 PF00563 EAL domain N646_4275 PF00990 Diguanylate cyclase, GGDEF domain N646_4275 PF13426 PAS domain N646_4276 PF16363 GDP-mannose 4,6 dehydratase N646_4278 PF07715 TonB-dependent Receptor Plug Domain N646_4278 PF00593 TonB dependent receptor N646_4278 PF04886 PT repeat N646_4279 PF07715 TonB-dependent Receptor Plug Domain N646_4279 PF00593 TonB dependent receptor N646_4280 PF03466 LysR substrate binding domain N646_4280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4281 PF00583 Acetyltransferase (GNAT) family N646_4281 PF13380 CoA binding domain N646_4281 PF13607 Succinyl-CoA ligase like flavodoxin domain N646_4282 PF05036 Sporulation related domain N646_4283 PF07478 D-ala D-ala ligase C-terminus N646_4283 PF01820 D-ala D-ala ligase N-terminus N646_4285 PF01253 Translation initiation factor SUI1 N646_4295 PF05707 Zonular occludens toxin (Zot) N646_4299 PF03466 LysR substrate binding domain N646_4299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4302 PF03701 Uncharacterised protein family (UPF0181) N646_4305 PF00072 Response regulator receiver domain N646_4305 PF00486 Transcriptional regulatory protein, C terminal N646_4307 PF02233 NAD(P) transhydrogenase beta subunit N646_4308 PF05222 Alanine dehydrogenase/PNT, N-terminal domain N646_4308 PF01262 Alanine dehydrogenase/PNT, C-terminal domain N646_4308 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch N646_4311 PF00990 Diguanylate cyclase, GGDEF domain N646_4311 PF00072 Response regulator receiver domain N646_4312 PF00990 Diguanylate cyclase, GGDEF domain N646_4312 PF00360 Phytochrome region N646_4312 PF01590 GAF domain N646_4312 PF00563 EAL domain N646_4314 PF00005 ABC transporter N646_4314 PF03459 TOBE domain N646_4315 PF00528 Binding-protein-dependent transport system inner membrane component N646_4317 PF07685 CobB/CobQ-like glutamine amidotransferase domain N646_4317 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain N646_4318 PF04076 Bacterial OB fold (BOF) protein N646_4321 PF18030 RimK PreATP-grasp domain N646_4321 PF08443 RimK-like ATP-grasp domain N646_4322 PF00155 Aminotransferase class I and II N646_4324 PF12833 Helix-turn-helix domain N646_4324 PF12852 Cupin N646_4325 PF01554 MatE N646_4327 PF03477 ATP cone domain N646_4327 PF13597 Anaerobic ribonucleoside-triphosphate reductase N646_4331 PF04143 Sulphur transport N646_4333 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_4333 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain N646_4334 PF01177 Asp/Glu/Hydantoin racemase N646_4335 PF02567 Phenazine biosynthesis-like protein N646_4338 PF00384 Molybdopterin oxidoreductase N646_4339 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4339 PF03466 LysR substrate binding domain N646_4340 PF02634 FdhD/NarQ family N646_4341 PF07690 Major Facilitator Superfamily N646_4342 PF00072 Response regulator receiver domain N646_4342 PF00196 Bacterial regulatory proteins, luxR family N646_4343 PF05231 MASE1 N646_4343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_4343 PF07730 Histidine kinase N646_4344 PF05231 MASE1 N646_4344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_4344 PF07730 Histidine kinase N646_4345 PF07690 Major Facilitator Superfamily N646_4346 PF01238 Phosphomannose isomerase type I N646_4350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III N646_4350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal N646_4351 PF00085 Thioredoxin N646_4352 PF07690 Major Facilitator Superfamily N646_4353 PF11756 Nitrous oxide-stimulated promoter N646_4354 PF13302 Acetyltransferase (GNAT) domain N646_4356 PF07715 TonB-dependent Receptor Plug Domain N646_4356 PF00593 TonB dependent receptor N646_4359 PF03605 Anaerobic c4-dicarboxylate membrane transporter N646_4362 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N646_4362 PF14824 Sirohaem biosynthesis protein central N646_4362 PF10414 Sirohaem synthase dimerisation region N646_4363 PF01226 Formate/nitrite transporter N646_4364 PF13806 Rieske-like [2Fe-2S] domain N646_4365 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N646_4365 PF18267 Rubredoxin NAD+ reductase C-terminal domain N646_4365 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N646_4365 PF04324 BFD-like [2Fe-2S] binding domain N646_4365 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_4366 PF14760 Rnk N-terminus N646_4366 PF01272 Transcription elongation factor, GreA/GreB, C-term N646_4367 PF00563 EAL domain N646_4367 PF03707 Bacterial signalling protein N terminal repeat N646_4367 PF00990 Diguanylate cyclase, GGDEF domain N646_4369 PF00563 EAL domain N646_4369 PF00990 Diguanylate cyclase, GGDEF domain N646_4369 PF03707 Bacterial signalling protein N terminal repeat N646_4370 PF00296 Luciferase-like monooxygenase N646_4374 PF09154 Domain of unknown function (DUF1939) N646_4374 PF00128 Alpha amylase, catalytic domain N646_4375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_4375 PF00672 HAMP domain N646_4376 PF00842 Alanine racemase, C-terminal domain N646_4376 PF01168 Alanine racemase, N-terminal domain N646_4379 PF01565 FAD binding domain N646_4379 PF09330 D-lactate dehydrogenase, membrane binding N646_4380 PF03466 LysR substrate binding domain N646_4380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4382 PF05762 VWA domain containing CoxE-like protein N646_4383 PF07728 AAA domain (dynein-related subfamily) N646_4383 PF17868 AAA lid domain N646_4383 PF12592 Protein of unknown function (DUF3763) N646_4385 PF01212 Beta-eliminating lyase N646_4387 PF03606 C4-dicarboxylate anaerobic carrier N646_4389 PF08212 Lipocalin-like domain N646_4392 PF13476 AAA domain N646_4393 PF00149 Calcineurin-like phosphoesterase N646_4393 PF12320 Type 5 capsule protein repressor C-terminal domain N646_4397 PF16671 Actin cross-linking domain N646_4397 PF04717 Type VI secretion system, phage-baseplate injector N646_4399 PF10431 C-terminal, D2-small domain, of ClpB protein N646_4399 PF00004 ATPase family associated with various cellular activities (AAA) N646_4399 PF07724 AAA domain (Cdc48 subfamily) N646_4399 PF17871 AAA lid domain N646_4411 PF00691 OmpA family N646_4411 PF13677 Membrane MotB of proton-channel complex MotA/MotB N646_4415 PF00069 Protein kinase domain N646_4415 PF03793 PASTA domain N646_4419 PF00211 Adenylate and Guanylate cyclase catalytic domain N646_4419 PF00072 Response regulator receiver domain N646_4426 PF01077 Nitrite and sulphite reductase 4Fe-4S domain N646_4426 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain N646_4426 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_4426 PF13806 Rieske-like [2Fe-2S] domain N646_4426 PF18267 Rubredoxin NAD+ reductase C-terminal domain N646_4426 PF04324 BFD-like [2Fe-2S] binding domain N646_4427 PF00005 ABC transporter N646_4428 PF00528 Binding-protein-dependent transport system inner membrane component N646_4429 PF00005 ABC transporter N646_4431 PF03861 ANTAR domain N646_4431 PF08376 Nitrate and nitrite sensing N646_4432 PF01738 Dienelactone hydrolase family N646_4433 PF02885 Glycosyl transferase family, helical bundle domain N646_4433 PF00591 Glycosyl transferase family, a/b domain N646_4434 PF14824 Sirohaem biosynthesis protein central N646_4434 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases N646_4434 PF10414 Sirohaem synthase dimerisation region N646_4435 PF01568 Molydopterin dinucleotide binding domain N646_4435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N646_4435 PF00384 Molybdopterin oxidoreductase N646_4437 PF03222 Tryptophan/tyrosine permease family N646_4438 PF07694 5TMR of 5TMR-LYT N646_4438 PF00990 Diguanylate cyclase, GGDEF domain N646_4440 PF00082 Subtilase family N646_4440 PF01483 Proprotein convertase P-domain N646_4444 PF00072 Response regulator receiver domain N646_4444 PF00486 Transcriptional regulatory protein, C terminal N646_4447 PF13333 Integrase core domain N646_4447 PF00665 Integrase core domain N646_4447 PF13276 HTH-like domain N646_4451 PF04314 Copper chaperone PCu(A)C N646_4453 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N646_4453 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain N646_4456 PF01081 KDPG and KHG aldolase N646_4457 PF00294 pfkB family carbohydrate kinase N646_4458 PF07883 Cupin domain N646_4459 PF05426 Alginate lyase N646_4459 PF07940 Heparinase II/III-like protein N646_4460 PF05426 Alginate lyase N646_4460 PF07940 Heparinase II/III-like protein N646_4461 PF08787 Alginate lyase N646_4462 PF08787 Alginate lyase N646_4465 PF08787 Alginate lyase N646_4467 PF07729 FCD domain N646_4467 PF00392 Bacterial regulatory proteins, gntR family N646_4468 PF00392 Bacterial regulatory proteins, gntR family N646_4468 PF07729 FCD domain N646_4469 PF00571 CBS domain N646_4470 PF07733 Bacterial DNA polymerase III alpha NTPase domain N646_4470 PF11490 DNA polymerase III polC-type N-terminus II N646_4470 PF17657 Bacterial DNA polymerase III alpha subunit finger domain N646_4470 PF14579 Helix-hairpin-helix motif N646_4470 PF00929 Exonuclease N646_4470 PF02811 PHP domain N646_4471 PF00474 Sodium:solute symporter family N646_4475 PF00676 Dehydrogenase E1 component N646_4476 PF02780 Transketolase, C-terminal domain N646_4476 PF02779 Transketolase, pyrimidine binding domain N646_4477 PF00364 Biotin-requiring enzyme N646_4477 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) N646_4477 PF02817 e3 binding domain N646_4478 PF01012 Electron transfer flavoprotein domain N646_4478 PF00766 Electron transfer flavoprotein FAD-binding domain N646_4480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4480 PF03466 LysR substrate binding domain N646_4482 PF00043 Glutathione S-transferase, C-terminal domain N646_4482 PF13417 Glutathione S-transferase, N-terminal domain N646_4483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4483 PF03466 LysR substrate binding domain N646_4485 PF00528 Binding-protein-dependent transport system inner membrane component N646_4486 PF00528 Binding-protein-dependent transport system inner membrane component N646_4487 PF00497 Bacterial extracellular solute-binding proteins, family 3 N646_4488 PF00005 ABC transporter N646_4494 PF02028 BCCT, betaine/carnitine/choline family transporter N646_4496 PF00171 Aldehyde dehydrogenase family N646_4499 PF07992 Pyridine nucleotide-disulphide oxidoreductase N646_4499 PF00724 NADH:flavin oxidoreductase / NADH oxidase family N646_4500 PF01040 UbiA prenyltransferase family N646_4502 PF00510 Cytochrome c oxidase subunit III N646_4503 PF00115 Cytochrome C and Quinol oxidase polypeptide I N646_4504 PF00116 Cytochrome C oxidase subunit II, periplasmic domain N646_4504 PF06481 COX Aromatic Rich Motif N646_4506 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N646_4506 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N646_4507 PF00378 Enoyl-CoA hydratase/isomerase N646_4508 PF00378 Enoyl-CoA hydratase/isomerase N646_4510 PF00171 Aldehyde dehydrogenase family N646_4511 PF02803 Thiolase, C-terminal domain N646_4511 PF00108 Thiolase, N-terminal domain N646_4512 PF09278 MerR, DNA binding N646_4512 PF00376 MerR family regulatory protein N646_4513 PF00441 Acyl-CoA dehydrogenase, C-terminal domain N646_4513 PF02770 Acyl-CoA dehydrogenase, middle domain N646_4513 PF02771 Acyl-CoA dehydrogenase, N-terminal domain N646_4514 PF01039 Carboxyl transferase domain N646_4515 PF00378 Enoyl-CoA hydratase/isomerase N646_4516 PF00682 HMGL-like N646_4518 PF02913 FAD linked oxidases, C-terminal domain N646_4518 PF01565 FAD binding domain N646_4518 PF13183 4Fe-4S dicluster domain N646_4519 PF04909 Amidohydrolase N646_4520 PF00561 alpha/beta hydrolase fold N646_4521 PF01965 DJ-1/PfpI family N646_4521 PF12833 Helix-turn-helix domain N646_4523 PF00795 Carbon-nitrogen hydrolase N646_4524 PF04069 Substrate binding domain of ABC-type glycine betaine transport system N646_4525 PF00528 Binding-protein-dependent transport system inner membrane component N646_4526 PF00005 ABC transporter N646_4526 PF00571 CBS domain N646_4527 PF00528 Binding-protein-dependent transport system inner membrane component N646_4528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_4528 PF08447 PAS fold N646_4528 PF13426 PAS domain N646_4531 PF01914 MarC family integral membrane protein N646_4532 PF01258 Prokaryotic dksA/traR C4-type zinc finger N646_4533 PF07683 Cobalamin synthesis protein cobW C-terminal domain N646_4533 PF02492 CobW/HypB/UreG, nucleotide-binding domain N646_4534 PF07683 Cobalamin synthesis protein cobW C-terminal domain N646_4534 PF02492 CobW/HypB/UreG, nucleotide-binding domain N646_4535 PF01551 Peptidase family M23 N646_4535 PF01476 LysM domain N646_4535 PF08525 Opacity-associated protein A N-terminal motif N646_4536 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family N646_4537 PF02492 CobW/HypB/UreG, nucleotide-binding domain N646_4537 PF07683 Cobalamin synthesis protein cobW C-terminal domain N646_4538 PF00132 Bacterial transferase hexapeptide (six repeats) N646_4539 PF01979 Amidohydrolase family N646_4540 PF01475 Ferric uptake regulator family N646_4543 PF01925 Sulfite exporter TauE/SafE N646_4547 PF12146 Serine aminopeptidase, S33 N646_4548 PF12146 Serine aminopeptidase, S33 N646_4549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4549 PF03466 LysR substrate binding domain N646_4550 PF00871 Acetokinase family N646_4553 PF03880 DbpA RNA binding domain N646_4553 PF00270 DEAD/DEAH box helicase N646_4553 PF00271 Helicase conserved C-terminal domain N646_4554 PF00575 S1 RNA binding domain N646_4554 PF08206 Ribonuclease B OB domain N646_4554 PF00773 RNB domain N646_4555 PF12833 Helix-turn-helix domain N646_4557 PF12849 PBP superfamily domain N646_4559 PF12729 Four helix bundle sensory module for signal transduction N646_4559 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_4559 PF00672 HAMP domain N646_4560 PF00005 ABC transporter N646_4561 PF00563 EAL domain N646_4561 PF12792 CSS motif domain associated with EAL N646_4566 PF00270 DEAD/DEAH box helicase N646_4566 PF00271 Helicase conserved C-terminal domain N646_4567 PF02492 CobW/HypB/UreG, nucleotide-binding domain N646_4567 PF07683 Cobalamin synthesis protein cobW C-terminal domain N646_4569 PF01470 Pyroglutamyl peptidase N646_4571 PF00313 'Cold-shock' DNA-binding domain N646_4573 PF00291 Pyridoxal-phosphate dependent enzyme N646_4575 PF09905 DNA-binding protein VF530 N646_4576 PF00271 Helicase conserved C-terminal domain N646_4576 PF00270 DEAD/DEAH box helicase N646_4579 PF12843 Putative quorum-sensing-regulated virulence factor N646_4583 PF01329 Pterin 4 alpha carbinolamine dehydratase N646_4584 PF00351 Biopterin-dependent aromatic amino acid hydroxylase N646_4585 PF00501 AMP-binding enzyme N646_4585 PF13193 AMP-binding enzyme C-terminal domain N646_4587 PF03466 LysR substrate binding domain N646_4587 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4589 PF00892 EamA-like transporter family N646_4592 PF00465 Iron-containing alcohol dehydrogenase N646_4593 PF07995 Glucose / Sorbosone dehydrogenase N646_4595 PF01797 Transposase IS200 like N646_4596 PF00210 Ferritin-like domain N646_4597 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_4597 PF00672 HAMP domain N646_4597 PF17200 Single Cache domain 2 N646_4604 PF13533 Biotin-lipoyl like N646_4605 PF00072 Response regulator receiver domain N646_4605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase N646_4606 PF02321 Outer membrane efflux protein N646_4607 PF00005 ABC transporter N646_4607 PF00664 ABC transporter transmembrane region N646_4608 PF00005 ABC transporter N646_4610 PF04545 Sigma-70, region 4 N646_4610 PF04539 Sigma-70 region 3 N646_4610 PF04542 Sigma-70 region 2 N646_4610 PF00140 Sigma-70 factor, region 1.2 N646_4612 PF00990 Diguanylate cyclase, GGDEF domain N646_4614 PF00313 'Cold-shock' DNA-binding domain N646_4618 PF05736 OprF membrane domain N646_4618 PF00691 OmpA family N646_4620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase N646_4620 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase N646_4621 PF01040 UbiA prenyltransferase family N646_4622 PF02628 Cytochrome oxidase assembly protein N646_4626 PF00510 Cytochrome c oxidase subunit III N646_4627 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 N646_4628 PF00115 Cytochrome C and Quinol oxidase polypeptide I N646_4629 PF00116 Cytochrome C oxidase subunit II, periplasmic domain N646_4629 PF02790 Cytochrome C oxidase subunit II, transmembrane domain N646_4630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain N646_4630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III N646_4630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II N646_4630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I N646_4632 PF01810 LysE type translocator N646_4636 PF01557 Fumarylacetoacetate (FAA) hydrolase family N646_4639 PF00892 EamA-like transporter family N646_4640 PF00462 Glutaredoxin N646_4643 PF07690 Major Facilitator Superfamily N646_4644 PF03466 LysR substrate binding domain N646_4644 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4645 PF08448 PAS fold N646_4645 PF00563 EAL domain N646_4645 PF08447 PAS fold N646_4645 PF00990 Diguanylate cyclase, GGDEF domain N646_4646 PF01551 Peptidase family M23 N646_4646 PF01476 LysM domain N646_4646 PF08525 Opacity-associated protein A N-terminal motif N646_4651 PF02743 Cache domain N646_4651 PF00672 HAMP domain N646_4651 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_4653 PF03222 Tryptophan/tyrosine permease family N646_4657 PF03928 Haem-degrading N646_4658 PF00248 Aldo/keto reductase family N646_4660 PF03466 LysR substrate binding domain N646_4660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4664 PF01638 HxlR-like helix-turn-helix N646_4665 PF01797 Transposase IS200 like N646_4668 PF01758 Sodium Bile acid symporter family N646_4670 PF01161 Phosphatidylethanolamine-binding protein N646_4671 PF02567 Phenazine biosynthesis-like protein N646_4673 PF00005 ABC transporter N646_4676 PF00384 Molybdopterin oxidoreductase N646_4676 PF01568 Molydopterin dinucleotide binding domain N646_4676 PF04879 Molybdopterin oxidoreductase Fe4S4 domain N646_4676 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region N646_4676 PF12838 4Fe-4S dicluster domain N646_4679 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion N646_4680 PF00873 AcrB/AcrD/AcrF family N646_4683 PF00990 Diguanylate cyclase, GGDEF domain N646_4683 PF17151 Periplasmic sensor domain N646_4685 PF13302 Acetyltransferase (GNAT) domain N646_4687 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) N646_4688 PF00873 AcrB/AcrD/AcrF family N646_4689 PF13533 Biotin-lipoyl like N646_4691 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain N646_4691 PF00326 Prolyl oligopeptidase family N646_4692 PF12848 ABC transporter N646_4692 PF00005 ABC transporter N646_4692 PF16326 ABC transporter C-terminal domain N646_4693 PF00582 Universal stress protein family N646_4694 PF02525 Flavodoxin-like fold N646_4695 PF02254 TrkA-N domain N646_4695 PF00999 Sodium/hydrogen exchanger family N646_4698 PF00128 Alpha amylase, catalytic domain N646_4699 PF13411 MerR HTH family regulatory protein N646_4700 PF02627 Carboxymuconolactone decarboxylase family N646_4702 PF01752 Collagenase N646_4702 PF08453 Peptidase family M9 N-terminal N646_4702 PF04151 Bacterial pre-peptidase C-terminal domain N646_4704 PF01039 Carboxyl transferase domain N646_4704 PF17848 Acetyl-coA carboxylase zinc finger domain N646_4705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family N646_4705 PF03466 LysR substrate binding domain N646_4706 PF00672 HAMP domain N646_4706 PF02743 Cache domain N646_4706 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain N646_4708 PF03824 High-affinity nickel-transport protein N646_4709 PF02583 Metal-sensitive transcriptional repressor N646_4710 PF02447 GntP family permease N646_4711 PF01370 NAD dependent epimerase/dehydratase family N646_4712 PF01261 Xylose isomerase-like TIM barrel N646_4713 PF00596 Class II Aldolase and Adducin N-terminal domain N646_4714 PF17042 Nucleotide-binding C-terminal domain N646_4714 PF07005 Sugar-binding N-terminal domain N646_4715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase N646_4715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase N646_4716 PF08220 DeoR-like helix-turn-helix domain N646_4716 PF00455 DeoR C terminal sensor domain N646_4717 PF00528 Binding-protein-dependent transport system inner membrane component N646_4718 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle N646_4719 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_4719 PF00005 ABC transporter N646_4720 PF00005 ABC transporter N646_4720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region N646_4721 PF01554 MatE