locus-tag class description EEA47_00020 PF00691 OmpA family EEA47_00020 PF05736 OprF membrane domain EEA47_00035 PF13183 4Fe-4S dicluster domain EEA47_00035 PF01565 FAD binding domain EEA47_00035 PF02913 FAD linked oxidases, C-terminal domain EEA47_00040 PF04191 Phospholipid methyltransferase EEA47_00050 PF00221 Aromatic amino acid lyase EEA47_00055 PF01175 Urocanase Rossmann-like domain EEA47_00055 PF17392 Urocanase C-terminal domain EEA47_00055 PF17391 Urocanase N-terminal domain EEA47_00060 PF00491 Arginase family EEA47_00065 PF01979 Amidohydrolase family EEA47_00070 PF00392 Bacterial regulatory proteins, gntR family EEA47_00070 PF07702 UTRA domain EEA47_00085 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EEA47_00085 PF03129 Anticodon binding domain EEA47_00085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EEA47_00085 PF02824 TGS domain EEA47_00090 PF00707 Translation initiation factor IF-3, C-terminal domain EEA47_00090 PF05198 Translation initiation factor IF-3, N-terminal domain EEA47_00095 PF01632 Ribosomal protein L35 EEA47_00100 PF00453 Ribosomal protein L20 EEA47_00105 PF01906 Putative heavy-metal-binding EEA47_00140 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EEA47_00140 PF01409 tRNA synthetases class II core domain (F) EEA47_00145 PF01588 Putative tRNA binding domain EEA47_00145 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EEA47_00145 PF03147 Ferredoxin-fold anticodon binding domain EEA47_00145 PF03484 tRNA synthetase B5 domain EEA47_00145 PF03483 B3/4 domain EEA47_00155 PF00216 Bacterial DNA-binding protein EEA47_00165 PF05724 Thiopurine S-methyltransferase (TPMT) EEA47_00170 PF02222 ATP-grasp domain EEA47_00175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EEA47_00175 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region EEA47_00180 PF04172 LrgB-like family EEA47_00185 PF03788 LrgA family EEA47_00190 PF00929 Exonuclease EEA47_00190 PF08411 Exonuclease C-terminal EEA47_00195 PF00375 Sodium:dicarboxylate symporter family EEA47_00200 PF13460 NAD(P)H-binding EEA47_00205 PF02277 Phosphoribosyltransferase EEA47_00210 PF02654 Cobalamin-5-phosphate synthase EEA47_00215 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EEA47_00230 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EEA47_00235 PF01032 FecCD transport family EEA47_00240 PF00005 ABC transporter EEA47_00260 PF03466 LysR substrate binding domain EEA47_00260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_00270 PF01863 Protein of unknown function DUF45 EEA47_00275 PF05971 RNA methyltransferase EEA47_00295 PF00392 Bacterial regulatory proteins, gntR family EEA47_00300 PF00171 Aldehyde dehydrogenase family EEA47_00305 PF05544 Proline racemase EEA47_00310 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EEA47_00310 PF01266 FAD dependent oxidoreductase EEA47_00320 PF02423 Ornithine cyclodeaminase/mu-crystallin family EEA47_00325 PF00701 Dihydrodipicolinate synthetase family EEA47_00330 PF08402 TOBE domain EEA47_00330 PF00005 ABC transporter EEA47_00335 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_00340 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_00355 PF01752 Collagenase EEA47_00355 PF08453 Peptidase family M9 N-terminal EEA47_00365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_00365 PF00005 ABC transporter EEA47_00370 PF00005 ABC transporter EEA47_00370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_00375 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_00375 PF12911 N-terminal TM domain of oligopeptide transport permease C EEA47_00380 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_00385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_00390 PF01546 Peptidase family M20/M25/M40 EEA47_00390 PF07687 Peptidase dimerisation domain EEA47_00395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEA47_00400 PF04209 homogentisate 1,2-dioxygenase EEA47_00410 PF02798 Glutathione S-transferase, N-terminal domain EEA47_00410 PF14497 Glutathione S-transferase, C-terminal domain EEA47_00460 PF07007 Lysozyme inhibitor LprI EEA47_00485 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EEA47_00500 PF03553 Na+/H+ antiporter family EEA47_00505 PF00120 Glutamine synthetase, catalytic domain EEA47_00515 PF07722 Peptidase C26 EEA47_00520 PF01381 Helix-turn-helix EEA47_00520 PF07883 Cupin domain EEA47_00525 PF00171 Aldehyde dehydrogenase family EEA47_00530 PF01266 FAD dependent oxidoreductase EEA47_00535 PF00795 Carbon-nitrogen hydrolase EEA47_00540 PF04371 Porphyromonas-type peptidyl-arginine deiminase EEA47_00545 PF00171 Aldehyde dehydrogenase family EEA47_00550 PF00202 Aminotransferase class-III EEA47_00555 PF12792 CSS motif domain associated with EAL EEA47_00555 PF00563 EAL domain EEA47_00565 PF01047 MarR family EEA47_00570 PF04237 YjbR EEA47_00595 PF01627 Hpt domain EEA47_00595 PF00512 His Kinase A (phospho-acceptor) domain EEA47_00595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_00595 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EEA47_00595 PF00672 HAMP domain EEA47_00595 PF00072 Response regulator receiver domain EEA47_00600 PF00563 EAL domain EEA47_00600 PF00990 Diguanylate cyclase, GGDEF domain EEA47_00600 PF03707 Bacterial signalling protein N terminal repeat EEA47_00615 PF04204 Homoserine O-succinyltransferase EEA47_00625 PF00893 Small Multidrug Resistance protein EEA47_00630 PF03279 Bacterial lipid A biosynthesis acyltransferase EEA47_00635 PF02074 Carboxypeptidase Taq (M32) metallopeptidase EEA47_00640 PF01810 LysE type translocator EEA47_00650 PF01235 Sodium:alanine symporter family EEA47_00675 PF00884 Sulfatase EEA47_00680 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EEA47_00685 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_00690 PF00005 ABC transporter EEA47_00690 PF00571 CBS domain EEA47_00705 PF02028 BCCT, betaine/carnitine/choline family transporter EEA47_00710 PF00583 Acetyltransferase (GNAT) family EEA47_00715 PF00202 Aminotransferase class-III EEA47_00720 PF06339 Ectoine synthase EEA47_00725 PF00696 Amino acid kinase family EEA47_00725 PF13840 ACT domain EEA47_00730 PF00884 Sulfatase EEA47_00740 PF03781 Sulfatase-modifying factor enzyme 1 EEA47_00745 PF04055 Radical SAM superfamily EEA47_00745 PF13186 Iron-sulfur cluster-binding domain EEA47_00760 PF00884 Sulfatase EEA47_00765 PF00884 Sulfatase EEA47_00775 PF00664 ABC transporter transmembrane region EEA47_00775 PF00005 ABC transporter EEA47_00775 PF03412 Peptidase C39 family EEA47_00785 PF02321 Outer membrane efflux protein EEA47_00800 PF08220 DeoR-like helix-turn-helix domain EEA47_00800 PF00455 DeoR C terminal sensor domain EEA47_00805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EEA47_00805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EEA47_00810 PF03928 Haem-degrading EEA47_00815 PF00072 Response regulator receiver domain EEA47_00815 PF00990 Diguanylate cyclase, GGDEF domain EEA47_00835 PF00939 Sodium:sulfate symporter transmembrane region EEA47_00840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_00840 PF00512 His Kinase A (phospho-acceptor) domain EEA47_00845 PF02954 Bacterial regulatory protein, Fis family EEA47_00845 PF00158 Sigma-54 interaction domain EEA47_00845 PF00072 Response regulator receiver domain EEA47_00850 PF00563 EAL domain EEA47_00850 PF00990 Diguanylate cyclase, GGDEF domain EEA47_00850 PF03707 Bacterial signalling protein N terminal repeat EEA47_00855 PF11871 Domain of unknown function (DUF3391) EEA47_00855 PF01966 HD domain EEA47_00860 PF01810 LysE type translocator EEA47_00865 PF11230 Protein of unknown function (DUF3029) EEA47_00870 PF04055 Radical SAM superfamily EEA47_00880 PF03741 Integral membrane protein TerC family EEA47_00890 PF01966 HD domain EEA47_00895 PF00465 Iron-containing alcohol dehydrogenase EEA47_00900 PF03222 Tryptophan/tyrosine permease family EEA47_00915 PF00005 ABC transporter EEA47_00920 PF01497 Periplasmic binding protein EEA47_00925 PF01032 FecCD transport family EEA47_00930 PF07715 TonB-dependent Receptor Plug Domain EEA47_00930 PF00593 TonB dependent receptor EEA47_00940 PF00664 ABC transporter transmembrane region EEA47_00940 PF00005 ABC transporter EEA47_00945 PF00664 ABC transporter transmembrane region EEA47_00945 PF00005 ABC transporter EEA47_00950 PF07963 Prokaryotic N-terminal methylation motif EEA47_00950 PF08334 Type II secretion system (T2SS), protein G EEA47_00960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_00960 PF03466 LysR substrate binding domain EEA47_00965 PF03992 Antibiotic biosynthesis monooxygenase EEA47_00970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EEA47_00970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EEA47_00985 PF00012 Hsp70 protein EEA47_00990 PF00012 Hsp70 protein EEA47_01000 PF00990 Diguanylate cyclase, GGDEF domain EEA47_01035 PF02525 Flavodoxin-like fold EEA47_01040 PF00270 DEAD/DEAH box helicase EEA47_01040 PF11898 Domain of unknown function (DUF3418) EEA47_01040 PF04408 Helicase associated domain (HA2) EEA47_01040 PF00271 Helicase conserved C-terminal domain EEA47_01040 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EEA47_01055 PF02028 BCCT, betaine/carnitine/choline family transporter EEA47_01065 PF02397 Bacterial sugar transferase EEA47_01075 PF00534 Glycosyl transferases group 1 EEA47_01075 PF13439 Glycosyltransferase Family 4 EEA47_01105 PF13439 Glycosyltransferase Family 4 EEA47_01105 PF00534 Glycosyl transferases group 1 EEA47_01110 PF00534 Glycosyl transferases group 1 EEA47_01110 PF13439 Glycosyltransferase Family 4 EEA47_01115 PF00158 Sigma-54 interaction domain EEA47_01115 PF00072 Response regulator receiver domain EEA47_01115 PF02954 Bacterial regulatory protein, Fis family EEA47_01130 PF10531 SLBB domain EEA47_01130 PF02563 Polysaccharide biosynthesis/export protein EEA47_01140 PF01740 STAS domain EEA47_01150 PF01068 ATP dependent DNA ligase domain EEA47_01150 PF14743 DNA ligase OB-like domain EEA47_01160 PF01554 MatE EEA47_01165 PF00677 Lumazine binding domain EEA47_01175 PF03881 Fructosamine kinase EEA47_01180 PF01339 CheB methylesterase EEA47_01180 PF00072 Response regulator receiver domain EEA47_01185 PF05230 MASE2 domain EEA47_01185 PF00990 Diguanylate cyclase, GGDEF domain EEA47_01195 PF00877 NlpC/P60 family EEA47_01225 PF03942 DTW domain EEA47_01230 PF00480 ROK family EEA47_01240 PF03454 MoeA C-terminal region (domain IV) EEA47_01240 PF00994 Probable molybdopterin binding domain EEA47_01240 PF03453 MoeA N-terminal region (domain I and II) EEA47_01245 PF12804 MobA-like NTP transferase domain EEA47_01250 PF00005 ABC transporter EEA47_01250 PF08402 TOBE domain EEA47_01255 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_01260 PF12849 PBP superfamily domain EEA47_01265 PF00072 Response regulator receiver domain EEA47_01265 PF02954 Bacterial regulatory protein, Fis family EEA47_01265 PF00158 Sigma-54 interaction domain EEA47_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_01270 PF00512 His Kinase A (phospho-acceptor) domain EEA47_01280 PF12848 ABC transporter EEA47_01280 PF00005 ABC transporter EEA47_01285 PF02634 FdhD/NarQ family EEA47_01305 PF02613 Nitrate reductase delta subunit EEA47_01315 PF00384 Molybdopterin oxidoreductase EEA47_01315 PF01568 Molydopterin dinucleotide binding domain EEA47_01315 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EEA47_01320 PF13247 4Fe-4S dicluster domain EEA47_01350 PF00909 Ammonium Transporter Family EEA47_01355 PF02146 Sir2 family EEA47_01360 PF13416 Bacterial extracellular solute-binding protein EEA47_01365 PF13416 Bacterial extracellular solute-binding protein EEA47_01370 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_01375 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_01380 PF00005 ABC transporter EEA47_01380 PF08402 TOBE domain EEA47_01400 PF01171 PP-loop family EEA47_01405 PF00582 Universal stress protein family EEA47_01410 PF00027 Cyclic nucleotide-binding domain EEA47_01410 PF13545 Crp-like helix-turn-helix domain EEA47_01425 PF00403 Heavy-metal-associated domain EEA47_01435 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EEA47_01435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EEA47_01450 PF00115 Cytochrome C and Quinol oxidase polypeptide I EEA47_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_01465 PF00512 His Kinase A (phospho-acceptor) domain EEA47_01465 PF09308 LuxQ, periplasmic EEA47_01465 PF00072 Response regulator receiver domain EEA47_01480 PF06303 MatP N-terminal domain EEA47_01480 PF17414 MatP C-terminal ribbon-helix-helix domain EEA47_01485 PF13654 AAA domain EEA47_01485 PF05362 Lon protease (S16) C-terminal proteolytic domain EEA47_01490 PF07977 FabA-like domain EEA47_01495 PF04957 Ribosome modulation factor EEA47_01505 PF00005 ABC transporter EEA47_01505 PF16326 ABC transporter C-terminal domain EEA47_01505 PF12848 ABC transporter EEA47_01515 PF02926 THUMP domain EEA47_01515 PF01170 Putative RNA methylase family UPF0020 EEA47_01515 PF10672 S-adenosylmethionine-dependent methyltransferase EEA47_01520 PF07126 Cell-division protein ZapC EEA47_01525 PF01180 Dihydroorotate dehydrogenase EEA47_01530 PF05088 Bacterial NAD-glutamate dehydrogenase EEA47_01540 PF11940 Domain of unknown function (DUF3458) Ig-like fold EEA47_01540 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EEA47_01540 PF01433 Peptidase family M1 domain EEA47_01550 PF00595 PDZ domain EEA47_01550 PF17804 Tail specific protease N-terminal domain EEA47_01550 PF11818 C-terminal domain of tail specific protease (DUF3340) EEA47_01550 PF03572 Peptidase family S41 EEA47_01555 PF17516 ProQ C-terminal domain EEA47_01555 PF04352 ProQ/FINO family EEA47_01560 PF13185 GAF domain EEA47_01565 PF00005 ABC transporter EEA47_01565 PF00664 ABC transporter transmembrane region EEA47_01570 PF04403 Paraquat-inducible protein A EEA47_01575 PF02470 MlaD protein EEA47_01580 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF EEA47_01580 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF EEA47_01580 PF01189 16S rRNA methyltransferase RsmB/F EEA47_01600 PF00793 DAHP synthetase I family EEA47_01605 PF04461 Protein of unknown function (DUF520) EEA47_01610 PF10414 Sirohaem synthase dimerisation region EEA47_01610 PF14824 Sirohaem biosynthesis protein central EEA47_01610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EEA47_01620 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_01625 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_01630 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_01635 PF00005 ABC transporter EEA47_01640 PF01027 Inhibitor of apoptosis-promoting Bax1 EEA47_01650 PF04358 DsrC like protein EEA47_01655 PF00708 Acylphosphatase EEA47_01660 PF02743 Cache domain EEA47_01660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_01660 PF00672 HAMP domain EEA47_01665 PF10672 S-adenosylmethionine-dependent methyltransferase EEA47_01665 PF17785 PUA-like domain EEA47_01680 PF00691 OmpA family EEA47_01705 PF00691 OmpA family EEA47_01705 PF05736 OprF membrane domain EEA47_01715 PF13185 GAF domain EEA47_01715 PF00990 Diguanylate cyclase, GGDEF domain EEA47_01720 PF09339 IclR helix-turn-helix domain EEA47_01720 PF01614 Bacterial transcriptional regulator EEA47_01730 PF00248 Aldo/keto reductase family EEA47_01735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_01735 PF03466 LysR substrate binding domain EEA47_01740 PF00296 Luciferase-like monooxygenase EEA47_01745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_01745 PF03466 LysR substrate binding domain EEA47_01750 PF07690 Major Facilitator Superfamily EEA47_01760 PF00550 Phosphopantetheine attachment site EEA47_01760 PF02801 Beta-ketoacyl synthase, C-terminal domain EEA47_01760 PF00109 Beta-ketoacyl synthase, N-terminal domain EEA47_01760 PF16197 Ketoacyl-synthetase C-terminal extension EEA47_01760 PF00107 Zinc-binding dehydrogenase EEA47_01760 PF08240 Alcohol dehydrogenase GroES-like domain EEA47_01760 PF00698 Acyl transferase domain EEA47_01760 PF14765 Polyketide synthase dehydratase EEA47_01760 PF08659 KR domain EEA47_01765 PF12833 Helix-turn-helix domain EEA47_01765 PF02311 AraC-like ligand binding domain EEA47_01770 PF00857 Isochorismatase family EEA47_01775 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_01785 PF00107 Zinc-binding dehydrogenase EEA47_01785 PF08240 Alcohol dehydrogenase GroES-like domain EEA47_01790 PF02310 B12 binding domain EEA47_01790 PF02607 B12 binding domain EEA47_01790 PF02965 Vitamin B12 dependent methionine synthase, activation domain EEA47_01790 PF00809 Pterin binding enzyme EEA47_01790 PF02574 Homocysteine S-methyltransferase EEA47_01795 PF00005 ABC transporter EEA47_01800 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_01805 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_01815 PF00267 Gram-negative porin EEA47_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_01820 PF03466 LysR substrate binding domain EEA47_01830 PF00873 AcrB/AcrD/AcrF family EEA47_01835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_01835 PF03466 LysR substrate binding domain EEA47_01845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_01845 PF03466 LysR substrate binding domain EEA47_01850 PF01810 LysE type translocator EEA47_01860 PF06508 Queuosine biosynthesis protein QueC EEA47_01865 PF04055 Radical SAM superfamily EEA47_01880 PF00089 Trypsin EEA47_01890 PF13193 AMP-binding enzyme C-terminal domain EEA47_01890 PF16177 Acetyl-coenzyme A synthetase N-terminus EEA47_01890 PF00501 AMP-binding enzyme EEA47_01895 PF04303 PrpF protein EEA47_01900 PF00330 Aconitase family (aconitate hydratase) EEA47_01900 PF00694 Aconitase C-terminal domain EEA47_01905 PF00285 Citrate synthase, C-terminal domain EEA47_01935 PF01970 Tripartite tricarboxylate transporter TctA family EEA47_01945 PF01925 Sulfite exporter TauE/SafE EEA47_01950 PF16868 NMT1-like family EEA47_01960 PF05844 YopD protein EEA47_01970 PF07720 Tetratricopeptide repeat EEA47_01975 PF04792 V antigen (LcrV) protein EEA47_01985 PF09621 Type III secretion system regulator (LcrR) EEA47_01990 PF00771 FHIPEP family EEA47_02010 PF09059 TyeA EEA47_02020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEA47_02020 PF02874 ATP synthase alpha/beta family, beta-barrel domain EEA47_02020 PF18269 T3SS EscN ATPase C-terminal domain EEA47_02035 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EEA47_02040 PF00813 FliP family EEA47_02045 PF01313 Bacterial export proteins, family 3 EEA47_02050 PF01311 Bacterial export proteins, family 1 EEA47_02055 PF01312 FlhB HrpN YscU SpaS Family EEA47_02060 PF12852 Cupin EEA47_02060 PF12833 Helix-turn-helix domain EEA47_02090 PF02661 Fic/DOC family EEA47_02100 PF02108 Flagellar assembly protein FliH EEA47_02110 PF01514 Secretory protein of YscJ/FliF family EEA47_02115 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI EEA47_02125 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) EEA47_02130 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF EEA47_02140 PF16693 Inner membrane component of T3SS, periplasmic domain EEA47_02140 PF16697 Inner membrane component of T3SS, cytoplasmic domain EEA47_02145 PF03958 Bacterial type II/III secretion system short domain EEA47_02145 PF00263 Bacterial type II and III secretion system protein EEA47_02160 PF12833 Helix-turn-helix domain EEA47_02180 PF00171 Aldehyde dehydrogenase family EEA47_02185 PF00158 Sigma-54 interaction domain EEA47_02185 PF02954 Bacterial regulatory protein, Fis family EEA47_02185 PF01590 GAF domain EEA47_02210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EEA47_02210 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EEA47_02215 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EEA47_02220 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EEA47_02220 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EEA47_02225 PF02311 AraC-like ligand binding domain EEA47_02225 PF12833 Helix-turn-helix domain EEA47_02230 PF07715 TonB-dependent Receptor Plug Domain EEA47_02230 PF00593 TonB dependent receptor EEA47_02235 PF00072 Response regulator receiver domain EEA47_02235 PF12431 Transcriptional regulator EEA47_02240 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EEA47_02240 PF17203 Single cache domain 3 EEA47_02240 PF00989 PAS fold EEA47_02240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_02255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_02270 PF03466 LysR substrate binding domain EEA47_02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_02285 PF08543 Phosphomethylpyrimidine kinase EEA47_02290 PF00155 Aminotransferase class I and II EEA47_02295 PF06826 Predicted Permease Membrane Region EEA47_02295 PF02080 TrkA-C domain EEA47_02305 PF13533 Biotin-lipoyl like EEA47_02320 PF00135 Carboxylesterase family EEA47_02325 PF13091 PLD-like domain EEA47_02330 PF17243 POTRA domain TamA domain 1 EEA47_02330 PF01103 Surface antigen EEA47_02335 PF11008 Protein of unknown function (DUF2846) EEA47_02340 PF01810 LysE type translocator EEA47_02345 PF01810 LysE type translocator EEA47_02350 PF07237 Protein of unknown function (DUF1428) EEA47_02370 PF02272 DHHA1 domain EEA47_02370 PF01411 tRNA synthetases class II (A) EEA47_02370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EEA47_02375 PF13302 Acetyltransferase (GNAT) domain EEA47_02380 PF14602 Hexapeptide repeat of succinyl-transferase EEA47_02380 PF12464 Maltose acetyltransferase EEA47_02480 PF06271 RDD family EEA47_02595 PF08378 Nuclease-related domain EEA47_02600 PF00293 NUDIX domain EEA47_02635 PF04463 Protein of unknown function (DUF523) EEA47_02795 PF00313 'Cold-shock' DNA-binding domain EEA47_02840 PF00589 Phage integrase family EEA47_03215 PF00583 Acetyltransferase (GNAT) family EEA47_03280 PF00589 Phage integrase family EEA47_03280 PF13495 Phage integrase, N-terminal SAM-like domain EEA47_03295 PF13302 Acetyltransferase (GNAT) domain EEA47_03300 PF00158 Sigma-54 interaction domain EEA47_03300 PF18024 Helix-turn-helix domain EEA47_03305 PF05128 Domain of unknown function (DUF697) EEA47_03310 PF04317 YcjX-like family, DUF463 EEA47_03330 PF04715 Anthranilate synthase component I, N terminal region EEA47_03330 PF00425 chorismate binding enzyme EEA47_03335 PF09308 LuxQ, periplasmic EEA47_03335 PF00512 His Kinase A (phospho-acceptor) domain EEA47_03335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_03335 PF00072 Response regulator receiver domain EEA47_03345 PF00293 NUDIX domain EEA47_03350 PF03222 Tryptophan/tyrosine permease family EEA47_03355 PF03313 Serine dehydratase alpha chain EEA47_03355 PF03315 Serine dehydratase beta chain EEA47_03360 PF04940 Sensors of blue-light using FAD EEA47_03360 PF00563 EAL domain EEA47_03370 PF01242 6-pyruvoyl tetrahydropterin synthase EEA47_03375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_03375 PF17200 Single Cache domain 2 EEA47_03375 PF00672 HAMP domain EEA47_03380 PF00152 tRNA synthetases class II (D, K and N) EEA47_03380 PF01336 OB-fold nucleic acid binding domain EEA47_03390 PF00155 Aminotransferase class I and II EEA47_03390 PF00392 Bacterial regulatory proteins, gntR family EEA47_03405 PF00155 Aminotransferase class I and II EEA47_03425 PF00672 HAMP domain EEA47_03425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_03430 PF02028 BCCT, betaine/carnitine/choline family transporter EEA47_03440 PF00196 Bacterial regulatory proteins, luxR family EEA47_03440 PF00072 Response regulator receiver domain EEA47_03445 PF07730 Histidine kinase EEA47_03445 PF17200 Single Cache domain 2 EEA47_03450 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EEA47_03460 PF03480 Bacterial extracellular solute-binding protein, family 7 EEA47_03475 PF00753 Metallo-beta-lactamase superfamily EEA47_03480 PF05951 Bacterial protein of unknown function (DUF882) EEA47_03485 PF01471 Putative peptidoglycan binding domain EEA47_03485 PF03734 L,D-transpeptidase catalytic domain EEA47_03510 PF00925 GTP cyclohydrolase II EEA47_03520 PF03918 Cytochrome C biogenesis protein EEA47_03525 PF08534 Redoxin EEA47_03530 PF01578 Cytochrome C assembly protein EEA47_03530 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EEA47_03535 PF03916 Polysulphide reductase, NrfD EEA47_03540 PF13247 4Fe-4S dicluster domain EEA47_03550 PF02335 Cytochrome c552 EEA47_03565 PF03989 DNA gyrase C-terminal domain, beta-propeller EEA47_03565 PF00521 DNA gyrase/topoisomerase IV, subunit A EEA47_03575 PF03477 ATP cone domain EEA47_03575 PF02867 Ribonucleotide reductase, barrel domain EEA47_03575 PF00317 Ribonucleotide reductase, all-alpha domain EEA47_03580 PF00268 Ribonucleotide reductase, small chain EEA47_03590 PF00994 Probable molybdopterin binding domain EEA47_03605 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EEA47_03610 PF03435 Saccharopine dehydrogenase NADP binding domain EEA47_03610 PF16653 Saccharopine dehydrogenase C-terminal domain EEA47_03615 PF00202 Aminotransferase class-III EEA47_03645 PF01797 Transposase IS200 like EEA47_03650 PF01066 CDP-alcohol phosphatidyltransferase EEA47_03655 PF01541 GIY-YIG catalytic domain EEA47_03655 PF02151 UvrB/uvrC motif EEA47_03655 PF08459 UvrC Helix-hairpin-helix N-terminal EEA47_03660 PF00196 Bacterial regulatory proteins, luxR family EEA47_03660 PF00072 Response regulator receiver domain EEA47_03665 PF00136 DNA polymerase family B EEA47_03665 PF03104 DNA polymerase family B, exonuclease domain EEA47_03675 PF01132 Elongation factor P (EF-P) OB domain EEA47_03675 PF08207 Elongation factor P (EF-P) KOW-like domain EEA47_03675 PF09285 Elongation factor P, C-terminal EEA47_03680 PF04269 Protein of unknown function, DUF440 EEA47_03685 PF00849 RNA pseudouridylate synthase EEA47_03685 PF01479 S4 domain EEA47_03695 PF01300 Telomere recombination EEA47_03700 PF02811 PHP domain EEA47_03705 PF08056 Tryptophan operon leader peptide EEA47_03710 PF04715 Anthranilate synthase component I, N terminal region EEA47_03710 PF00425 chorismate binding enzyme EEA47_03715 PF00117 Glutamine amidotransferase class-I EEA47_03720 PF02885 Glycosyl transferase family, helical bundle domain EEA47_03720 PF00591 Glycosyl transferase family, a/b domain EEA47_03725 PF00218 Indole-3-glycerol phosphate synthase EEA47_03725 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EEA47_03730 PF00291 Pyridoxal-phosphate dependent enzyme EEA47_03735 PF00290 Tryptophan synthase alpha chain EEA47_03740 PF00027 Cyclic nucleotide-binding domain EEA47_03740 PF13545 Crp-like helix-turn-helix domain EEA47_03745 PF00501 AMP-binding enzyme EEA47_03745 PF13193 AMP-binding enzyme C-terminal domain EEA47_03755 PF00375 Sodium:dicarboxylate symporter family EEA47_03760 PF17327 Acyl homoserine lactone synthase EEA47_03765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_03765 PF00072 Response regulator receiver domain EEA47_03775 PF04279 Intracellular septation protein A EEA47_03780 PF03061 Thioesterase superfamily EEA47_03785 PF03795 YCII-related domain EEA47_03795 PF08267 Cobalamin-independent synthase, N-terminal domain EEA47_03795 PF01717 Cobalamin-independent synthase, Catalytic domain EEA47_03800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_03800 PF03466 LysR substrate binding domain EEA47_03815 PF00990 Diguanylate cyclase, GGDEF domain EEA47_03815 PF08447 PAS fold EEA47_03815 PF08448 PAS fold EEA47_03815 PF00563 EAL domain EEA47_03820 PF11842 Domain of unknown function (DUF3362) EEA47_03820 PF04055 Radical SAM superfamily EEA47_03820 PF08497 Radical SAM N-terminal EEA47_03840 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase EEA47_03845 PF00535 Glycosyl transferase family 2 EEA47_03850 PF00072 Response regulator receiver domain EEA47_03850 PF00486 Transcriptional regulatory protein, C terminal EEA47_03855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_03855 PF00672 HAMP domain EEA47_03855 PF00512 His Kinase A (phospho-acceptor) domain EEA47_03875 PF03466 LysR substrate binding domain EEA47_03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_03880 PF00529 HlyD membrane-fusion protein of T1SS EEA47_03880 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_03890 PF08267 Cobalamin-independent synthase, N-terminal domain EEA47_03890 PF01717 Cobalamin-independent synthase, Catalytic domain EEA47_03910 PF02687 FtsX-like permease family EEA47_03910 PF00005 ABC transporter EEA47_03910 PF12704 MacB-like periplasmic core domain EEA47_03915 PF02687 FtsX-like permease family EEA47_03915 PF00005 ABC transporter EEA47_03915 PF12704 MacB-like periplasmic core domain EEA47_03920 PF12704 MacB-like periplasmic core domain EEA47_03920 PF02687 FtsX-like permease family EEA47_03920 PF00005 ABC transporter EEA47_03930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_03950 PF00085 Thioredoxin EEA47_03955 PF11412 Disulphide bond corrector protein DsbC EEA47_03955 PF02683 Cytochrome C biogenesis protein transmembrane region EEA47_03965 PF00196 Bacterial regulatory proteins, luxR family EEA47_03965 PF00072 Response regulator receiver domain EEA47_03970 PF00512 His Kinase A (phospho-acceptor) domain EEA47_03970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_03975 PF13247 4Fe-4S dicluster domain EEA47_03980 PF03916 Polysulphide reductase, NrfD EEA47_03985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EEA47_03985 PF00384 Molybdopterin oxidoreductase EEA47_03985 PF01568 Molydopterin dinucleotide binding domain EEA47_03990 PF00034 Cytochrome c EEA47_03995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EEA47_04000 PF04403 Paraquat-inducible protein A EEA47_04005 PF02470 MlaD protein EEA47_04025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_04030 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EEA47_04035 PF18073 Rubredoxin metal binding domain EEA47_04040 PF06305 Lipopolysaccharide assembly protein A domain EEA47_04045 PF00216 Bacterial DNA-binding protein EEA47_04050 PF00575 S1 RNA binding domain EEA47_04055 PF02224 Cytidylate kinase EEA47_04060 PF01343 Peptidase family S49 EEA47_04060 PF08496 Peptidase family S49 N-terminal EEA47_04065 PF00106 short chain dehydrogenase EEA47_04080 PF02811 PHP domain EEA47_04080 PF14579 Helix-hairpin-helix motif EEA47_04080 PF01336 OB-fold nucleic acid binding domain EEA47_04080 PF07733 Bacterial DNA polymerase III alpha NTPase domain EEA47_04080 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EEA47_04085 PF01584 CheW-like domain EEA47_04085 PF00072 Response regulator receiver domain EEA47_04090 PF00480 ROK family EEA47_04095 PF00224 Pyruvate kinase, barrel domain EEA47_04095 PF02887 Pyruvate kinase, alpha/beta domain EEA47_04100 PF01734 Patatin-like phospholipase EEA47_04115 PF00209 Sodium:neurotransmitter symporter family EEA47_04130 PF02378 Phosphotransferase system, EIIC EEA47_04130 PF00367 phosphotransferase system, EIIB EEA47_04135 PF01026 TatD related DNase EEA47_04140 PF09115 DNA polymerase III, delta subunit, C terminal EEA47_04145 PF02223 Thymidylate kinase EEA47_04150 PF02618 YceG-like family EEA47_04155 PF01063 Amino-transferase class IV EEA47_04160 PF00109 Beta-ketoacyl synthase, N-terminal domain EEA47_04160 PF02801 Beta-ketoacyl synthase, C-terminal domain EEA47_04165 PF00550 Phosphopantetheine attachment site EEA47_04175 PF00698 Acyl transferase domain EEA47_04180 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EEA47_04180 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EEA47_04185 PF02504 Fatty acid synthesis protein EEA47_04190 PF01783 Ribosomal L32p protein family EEA47_04195 PF02620 Large ribosomal RNA subunit accumulation protein YceD EEA47_04200 PF02545 Maf-like protein EEA47_04205 PF01479 S4 domain EEA47_04205 PF00849 RNA pseudouridylate synthase EEA47_04215 PF10150 Ribonuclease E/G family EEA47_04215 PF00575 S1 RNA binding domain EEA47_04215 PF12111 Polyribonucleotide phosphorylase C terminal EEA47_04225 PF00916 Sulfate permease family EEA47_04225 PF01740 STAS domain EEA47_04230 PF01797 Transposase IS200 like EEA47_04235 PF01451 Low molecular weight phosphotyrosine protein phosphatase EEA47_04240 PF12557 Cob(I)alamin adenosyltransferase N terminal EEA47_04240 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP EEA47_04250 PF00485 Phosphoribulokinase / Uridine kinase family EEA47_04255 PF10609 NUBPL iron-transfer P-loop NTPase EEA47_04260 PF09334 tRNA synthetases class I (M) EEA47_04260 PF01588 Putative tRNA binding domain EEA47_04270 PF07840 FadR C-terminal domain EEA47_04270 PF00392 Bacterial regulatory proteins, gntR family EEA47_04275 PF06450 Bacterial Na+/H+ antiporter B (NhaB) EEA47_04280 PF02600 Disulfide bond formation protein DsbB EEA47_04285 PF02810 SEC-C motif EEA47_04285 PF03695 Uncharacterised protein family (UPF0149) EEA47_04290 PF01207 Dihydrouridine synthase (Dus) EEA47_04295 PF17158 Membrane-associated sensor, integral membrane domain EEA47_04295 PF00990 Diguanylate cyclase, GGDEF domain EEA47_04300 PF02903 Alpha amylase, N-terminal ig-like domain EEA47_04300 PF00128 Alpha amylase, catalytic domain EEA47_04305 PF00005 ABC transporter EEA47_04310 PF02653 Branched-chain amino acid transport system / permease component EEA47_04320 PF04217 Protein of unknown function, DUF412 EEA47_04325 PF00871 Acetokinase family EEA47_04330 PF01515 Phosphate acetyl/butaryl transferase EEA47_04330 PF07085 DRTGG domain EEA47_04340 PF13409 Glutathione S-transferase, N-terminal domain EEA47_04345 PF00005 ABC transporter EEA47_04345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_04350 PF00005 ABC transporter EEA47_04350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_04355 PF12911 N-terminal TM domain of oligopeptide transport permease C EEA47_04355 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_04360 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_04365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_04370 PF02391 MoaE protein EEA47_04375 PF02597 ThiS family EEA47_04380 PF01967 MoaC family EEA47_04385 PF00994 Probable molybdopterin binding domain EEA47_04390 PF06463 Molybdenum Cofactor Synthesis C EEA47_04390 PF04055 Radical SAM superfamily EEA47_04395 PF01933 Uncharacterised protein family UPF0052 EEA47_04400 PF01627 Hpt domain EEA47_04405 PF02954 Bacterial regulatory protein, Fis family EEA47_04405 PF00072 Response regulator receiver domain EEA47_04405 PF00158 Sigma-54 interaction domain EEA47_04410 PF17757 UvrB interaction domain EEA47_04410 PF12344 Ultra-violet resistance protein B EEA47_04410 PF02151 UvrB/uvrC motif EEA47_04410 PF04851 Type III restriction enzyme, res subunit EEA47_04410 PF00271 Helicase conserved C-terminal domain EEA47_04420 PF01228 Glycine radical EEA47_04420 PF02901 Pyruvate formate lyase-like EEA47_04425 PF02508 Rnf-Nqr subunit, membrane protein EEA47_04430 PF04060 Putative Fe-S cluster EEA47_04435 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EEA47_04435 PF10531 SLBB domain EEA47_04435 PF13375 RnfC Barrel sandwich hybrid domain EEA47_04435 PF12838 4Fe-4S dicluster domain EEA47_04440 PF03116 NQR2, RnfD, RnfE family EEA47_04445 PF04205 FMN-binding domain EEA47_04450 PF02508 Rnf-Nqr subunit, membrane protein EEA47_04455 PF10576 Iron-sulfur binding domain of endonuclease III EEA47_04455 PF00633 Helix-hairpin-helix motif EEA47_04455 PF00730 HhH-GPD superfamily base excision DNA repair protein EEA47_04460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEA47_04465 PF10952 Protein of unknown function (DUF2753) EEA47_04470 PF00691 OmpA family EEA47_04470 PF18393 MotY N-terminal domain EEA47_04480 PF00929 Exonuclease EEA47_04485 PF13726 Na+-H+ antiporter family EEA47_04485 PF03553 Na+/H+ antiporter family EEA47_04495 PF00462 Glutaredoxin EEA47_04500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EEA47_04500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EEA47_04515 PF00465 Iron-containing alcohol dehydrogenase EEA47_04515 PF00171 Aldehyde dehydrogenase family EEA47_04520 PF01914 MarC family integral membrane protein EEA47_04525 PF00027 Cyclic nucleotide-binding domain EEA47_04525 PF00520 Ion transport protein EEA47_04530 PF02774 Semialdehyde dehydrogenase, dimerisation domain EEA47_04530 PF01118 Semialdehyde dehydrogenase, NAD binding domain EEA47_04535 PF03553 Na+/H+ antiporter family EEA47_04550 PF04245 37-kD nucleoid-associated bacterial protein EEA47_04555 PF07208 Protein of unknown function (DUF1414) EEA47_04560 PF11893 Domain of unknown function (DUF3413) EEA47_04560 PF00884 Sulfatase EEA47_04570 PF00850 Histone deacetylase domain EEA47_04575 PF00106 short chain dehydrogenase EEA47_04585 PF01751 Toprim domain EEA47_04585 PF01131 DNA topoisomerase EEA47_04590 PF00881 Nitroreductase family EEA47_04600 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_04600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EEA47_04605 PF01343 Peptidase family S49 EEA47_04610 PF00710 Asparaginase, N-terminal EEA47_04610 PF17763 Glutaminase/Asparaginase C-terminal domain EEA47_04615 PF07023 Protein of unknown function (DUF1315) EEA47_04625 PF01641 SelR domain EEA47_04630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EEA47_04630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EEA47_04635 PF01263 Aldose 1-epimerase EEA47_04640 PF08447 PAS fold EEA47_04640 PF13426 PAS domain EEA47_04640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_04645 PF13847 Methyltransferase domain EEA47_04665 PF00245 Alkaline phosphatase EEA47_04675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEA47_04680 PF03992 Antibiotic biosynthesis monooxygenase EEA47_04685 PF00924 Mechanosensitive ion channel EEA47_04685 PF05552 Conserved TM helix EEA47_04690 PF03692 Putative zinc- or iron-chelating domain EEA47_04695 PF04226 Transglycosylase associated protein EEA47_04700 PF03692 Putative zinc- or iron-chelating domain EEA47_04705 PF00230 Major intrinsic protein EEA47_04710 PF02132 RecR protein EEA47_04710 PF13662 Toprim domain EEA47_04715 PF02575 YbaB/EbfC DNA-binding family EEA47_04720 PF12169 DNA polymerase III subunits gamma and tau domain III EEA47_04720 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EEA47_04720 PF12170 DNA polymerase III tau subunit V interacting with alpha EEA47_04725 PF00156 Phosphoribosyl transferase domain EEA47_04730 PF04304 Protein of unknown function (DUF454) EEA47_04740 PF00072 Response regulator receiver domain EEA47_04745 PF03466 LysR substrate binding domain EEA47_04745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_04750 PF00156 Phosphoribosyl transferase domain EEA47_04755 PF02674 Colicin V production protein EEA47_04760 PF05036 Sporulation related domain EEA47_04765 PF02875 Mur ligase family, glutamate ligase domain EEA47_04765 PF08245 Mur ligase middle domain EEA47_04770 PF01039 Carboxyl transferase domain EEA47_04770 PF17848 Acetyl-coA carboxylase zinc finger domain EEA47_04780 PF01416 tRNA pseudouridine synthase EEA47_04790 PF01118 Semialdehyde dehydrogenase, NAD binding domain EEA47_04790 PF02774 Semialdehyde dehydrogenase, dimerisation domain EEA47_04795 PF11890 Domain of unknown function (DUF3410) EEA47_04795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEA47_04795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEA47_04805 PF00109 Beta-ketoacyl synthase, N-terminal domain EEA47_04805 PF02801 Beta-ketoacyl synthase, C-terminal domain EEA47_04810 PF01266 FAD dependent oxidoreductase EEA47_04810 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EEA47_04815 PF03358 NADPH-dependent FMN reductase EEA47_04825 PF08891 YfcL protein EEA47_04830 PF04315 Elongation factor P hydroxylase EEA47_04840 PF03458 UPF0126 domain EEA47_04845 PF01264 Chorismate synthase EEA47_04850 PF05175 Methyltransferase small domain EEA47_04855 PF01713 Smr domain EEA47_04860 PF00300 Histidine phosphatase superfamily (branch 1) EEA47_04865 PF16187 Middle or third domain of peptidase_M16 EEA47_04865 PF05193 Peptidase M16 inactive domain EEA47_04865 PF00675 Insulinase (Peptidase family M16) EEA47_04875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EEA47_04875 PF00378 Enoyl-CoA hydratase/isomerase EEA47_04875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EEA47_04880 PF02803 Thiolase, C-terminal domain EEA47_04880 PF00108 Thiolase, N-terminal domain EEA47_04890 PF08281 Sigma-70, region 4 EEA47_04890 PF04542 Sigma-70 region 2 EEA47_04900 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EEA47_04905 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EEA47_04910 PF04333 MlaA lipoprotein EEA47_04915 PF03918 Cytochrome C biogenesis protein EEA47_04920 PF03918 Cytochrome C biogenesis protein EEA47_04925 PF08534 Redoxin EEA47_04930 PF01578 Cytochrome C assembly protein EEA47_04930 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EEA47_04935 PF03100 CcmE EEA47_04940 PF04995 Heme exporter protein D (CcmD) EEA47_04945 PF01578 Cytochrome C assembly protein EEA47_04950 PF03379 CcmB protein EEA47_04955 PF00005 ABC transporter EEA47_04960 PF01797 Transposase IS200 like EEA47_04970 PF01584 CheW-like domain EEA47_04980 PF13614 AAA domain EEA47_04985 PF01339 CheB methylesterase EEA47_04985 PF00072 Response regulator receiver domain EEA47_04990 PF01584 CheW-like domain EEA47_04990 PF02895 Signal transducing histidine kinase, homodimeric domain EEA47_04990 PF00072 Response regulator receiver domain EEA47_04990 PF01627 Hpt domain EEA47_04990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_04995 PF04344 Chemotaxis phosphatase, CheZ EEA47_05000 PF00072 Response regulator receiver domain EEA47_05005 PF04539 Sigma-70 region 3 EEA47_05005 PF04542 Sigma-70 region 2 EEA47_05005 PF04545 Sigma-70, region 4 EEA47_05010 PF10609 NUBPL iron-transfer P-loop NTPase EEA47_05015 PF00448 SRP54-type protein, GTPase domain EEA47_05020 PF00771 FHIPEP family EEA47_05025 PF01312 FlhB HrpN YscU SpaS Family EEA47_05030 PF01311 Bacterial export proteins, family 1 EEA47_05035 PF01313 Bacterial export proteins, family 3 EEA47_05040 PF00813 FliP family EEA47_05045 PF04347 Flagellar biosynthesis protein, FliO EEA47_05050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EEA47_05055 PF02154 Flagellar motor switch protein FliM EEA47_05055 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EEA47_05080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEA47_05080 PF18269 T3SS EscN ATPase C-terminal domain EEA47_05090 PF01706 FliG C-terminal domain EEA47_05090 PF14841 FliG middle domain EEA47_05090 PF14842 FliG N-terminal domain EEA47_05095 PF01514 Secretory protein of YscJ/FliF family EEA47_05095 PF08345 Flagellar M-ring protein C-terminal EEA47_05100 PF02049 Flagellar hook-basal body complex protein FliE EEA47_05105 PF00158 Sigma-54 interaction domain EEA47_05105 PF02954 Bacterial regulatory protein, Fis family EEA47_05105 PF00072 Response regulator receiver domain EEA47_05110 PF00512 His Kinase A (phospho-acceptor) domain EEA47_05110 PF13188 PAS domain EEA47_05110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_05115 PF02954 Bacterial regulatory protein, Fis family EEA47_05115 PF00158 Sigma-54 interaction domain EEA47_05115 PF06490 Flagellar regulatory protein FleQ EEA47_05120 PF02561 Flagellar protein FliS EEA47_05130 PF02465 Flagellar hook-associated protein 2 N-terminus EEA47_05130 PF07195 Flagellar hook-associated protein 2 C-terminus EEA47_05130 PF07196 Flagellin hook IN motif EEA47_05135 PF03646 FlaG protein EEA47_05140 PF00700 Bacterial flagellin C-terminal helical region EEA47_05140 PF00669 Bacterial flagellin N-terminal helical region EEA47_05140 PF07196 Flagellin hook IN motif EEA47_05145 PF00700 Bacterial flagellin C-terminal helical region EEA47_05145 PF07196 Flagellin hook IN motif EEA47_05145 PF00669 Bacterial flagellin N-terminal helical region EEA47_05155 PF00700 Bacterial flagellin C-terminal helical region EEA47_05155 PF07196 Flagellin hook IN motif EEA47_05155 PF00669 Bacterial flagellin N-terminal helical region EEA47_05160 PF04261 Dyp-type peroxidase family EEA47_05165 PF11143 Protein of unknown function (DUF2919) EEA47_05185 PF03960 ArsC family EEA47_05190 PF07687 Peptidase dimerisation domain EEA47_05190 PF01546 Peptidase family M20/M25/M40 EEA47_05205 PF06804 NlpB/DapX lipoprotein EEA47_05210 PF00701 Dihydrodipicolinate synthetase family EEA47_05220 PF00578 AhpC/TSA family EEA47_05225 PF01594 AI-2E family transporter EEA47_05235 PF13181 Tetratricopeptide repeat EEA47_05235 PF01435 Peptidase family M48 EEA47_05240 PF03960 ArsC family EEA47_05245 PF03358 NADPH-dependent FMN reductase EEA47_05260 PF00860 Permease family EEA47_05270 PF00586 AIR synthase related protein, N-terminal domain EEA47_05270 PF02769 AIR synthase related protein, C-terminal domain EEA47_05275 PF00551 Formyl transferase EEA47_05280 PF13230 Glutamine amidotransferases class-II EEA47_05285 PF13580 SIS domain EEA47_05290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EEA47_05290 PF09317 Domain of unknown function (DUF1974) EEA47_05290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EEA47_05290 PF02770 Acyl-CoA dehydrogenase, middle domain EEA47_05295 PF01740 STAS domain EEA47_05295 PF00916 Sulfate permease family EEA47_05320 PF00929 Exonuclease EEA47_05325 PF00075 RNase H EEA47_05330 PF08241 Methyltransferase domain EEA47_05335 PF16123 Hydroxyacylglutathione hydrolase C-terminus EEA47_05335 PF00753 Metallo-beta-lactamase superfamily EEA47_05340 PF01476 LysM domain EEA47_05340 PF01464 Transglycosylase SLT domain EEA47_05350 PF03372 Endonuclease/Exonuclease/phosphatase family EEA47_05355 PF00543 Nitrogen regulatory protein P-II EEA47_05360 PF00034 Cytochrome c EEA47_05365 PF01171 PP-loop family EEA47_05365 PF09179 TilS substrate binding domain EEA47_05365 PF11734 TilS substrate C-terminal domain EEA47_05370 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EEA47_05375 PF07733 Bacterial DNA polymerase III alpha NTPase domain EEA47_05375 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EEA47_05375 PF01336 OB-fold nucleic acid binding domain EEA47_05375 PF14579 Helix-hairpin-helix motif EEA47_05375 PF02811 PHP domain EEA47_05380 PF01351 Ribonuclease HII EEA47_05385 PF02684 Lipid-A-disaccharide synthetase EEA47_05390 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_05390 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EEA47_05395 PF07977 FabA-like domain EEA47_05400 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EEA47_05400 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_05405 PF03938 Outer membrane protein (OmpH-like) EEA47_05410 PF01103 Surface antigen EEA47_05410 PF07244 Surface antigen variable number repeat EEA47_05415 PF02163 Peptidase family M50 EEA47_05415 PF17820 PDZ domain EEA47_05420 PF13288 DXP reductoisomerase C-terminal domain EEA47_05420 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EEA47_05420 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EEA47_05430 PF01255 Putative undecaprenyl diphosphate synthase EEA47_05435 PF01765 Ribosome recycling factor EEA47_05440 PF00696 Amino acid kinase family EEA47_05445 PF00889 Elongation factor TS EEA47_05450 PF00318 Ribosomal protein S2 EEA47_05455 PF00557 Metallopeptidase family M24 EEA47_05460 PF01842 ACT domain EEA47_05460 PF08335 GlnD PII-uridylyltransferase EEA47_05460 PF01966 HD domain EEA47_05460 PF01909 Nucleotidyltransferase domain EEA47_05465 PF11944 Protein of unknown function (DUF3461) EEA47_05475 PF00849 RNA pseudouridylate synthase EEA47_05480 PF04287 tRNA pseudouridine synthase C EEA47_05510 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EEA47_05515 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EEA47_05515 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EEA47_05520 PF01370 NAD dependent epimerase/dehydratase family EEA47_05545 PF03806 AbgT putative transporter family EEA47_05550 PF00444 Ribosomal protein L36 EEA47_05555 PF01197 Ribosomal protein L31 EEA47_05560 PF01980 tRNA-methyltransferase O EEA47_05560 PF18389 TrmO C-terminal domain EEA47_05565 PF03129 Anticodon binding domain EEA47_05565 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EEA47_05565 PF04073 Aminoacyl-tRNA editing domain EEA47_05575 PF06786 Uncharacterised protein family (UPF0253) EEA47_05585 PF00209 Sodium:neurotransmitter symporter family EEA47_05590 PF00704 Glycosyl hydrolases family 18 EEA47_05590 PF06483 Chitinase C EEA47_05600 PF01272 Transcription elongation factor, GreA/GreB, C-term EEA47_05600 PF03449 Transcription elongation factor, N-terminal EEA47_05605 PF00270 DEAD/DEAH box helicase EEA47_05605 PF00271 Helicase conserved C-terminal domain EEA47_05605 PF00570 HRDC domain EEA47_05605 PF16124 RecQ zinc-binding EEA47_05605 PF09382 RQC domain EEA47_05610 PF11798 IMS family HHH motif EEA47_05610 PF00817 impB/mucB/samB family EEA47_05610 PF11799 impB/mucB/samB family C-terminal domain EEA47_05620 PF00072 Response regulator receiver domain EEA47_05620 PF00990 Diguanylate cyclase, GGDEF domain EEA47_05630 PF02424 ApbE family EEA47_05635 PF00970 Oxidoreductase FAD-binding domain EEA47_05635 PF00111 2Fe-2S iron-sulfur cluster binding domain EEA47_05635 PF00175 Oxidoreductase NAD-binding domain EEA47_05640 PF02508 Rnf-Nqr subunit, membrane protein EEA47_05645 PF02508 Rnf-Nqr subunit, membrane protein EEA47_05650 PF04205 FMN-binding domain EEA47_05655 PF03116 NQR2, RnfD, RnfE family EEA47_05660 PF11973 NQRA C-terminal domain EEA47_05660 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) EEA47_05665 PF01722 BolA-like protein EEA47_05670 PF05175 Methyltransferase small domain EEA47_05675 PF03923 Uncharacterized lipoprotein EEA47_05675 PF08139 Prokaryotic membrane lipoprotein lipid attachment site EEA47_05680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EEA47_05685 PF07690 Major Facilitator Superfamily EEA47_05695 PF04542 Sigma-70 region 2 EEA47_05695 PF04545 Sigma-70, region 4 EEA47_05715 PF03502 Nucleoside-specific channel-forming protein, Tsx EEA47_05720 PF02558 Ketopantoate reductase PanE/ApbA EEA47_05720 PF08546 Ketopantoate reductase PanE/ApbA C terminal EEA47_05725 PF01965 DJ-1/PfpI family EEA47_05730 PF00266 Aminotransferase class-V EEA47_05735 PF17158 Membrane-associated sensor, integral membrane domain EEA47_05735 PF00990 Diguanylate cyclase, GGDEF domain EEA47_05740 PF02657 Fe-S metabolism associated domain EEA47_05745 PF00899 ThiF family EEA47_05750 PF06725 3D domain EEA47_05750 PF03562 MltA specific insert domain EEA47_05765 PF00696 Amino acid kinase family EEA47_05765 PF00583 Acetyltransferase (GNAT) family EEA47_05785 PF13538 UvrD-like helicase C-terminal domain EEA47_05790 PF12705 PD-(D/E)XK nuclease superfamily EEA47_05790 PF00580 UvrD/REP helicase N-terminal domain EEA47_05790 PF13361 UvrD-like helicase C-terminal domain EEA47_05800 PF17946 RecC C-terminal domain EEA47_05805 PF00884 Sulfatase EEA47_05805 PF11893 Domain of unknown function (DUF3413) EEA47_05815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_05815 PF03466 LysR substrate binding domain EEA47_05820 PF07130 YebG protein EEA47_05835 PF14602 Hexapeptide repeat of succinyl-transferase EEA47_05835 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle EEA47_05840 PF03009 Glycerophosphoryl diester phosphodiesterase family EEA47_05845 PF07690 Major Facilitator Superfamily EEA47_05855 PF00230 Major intrinsic protein EEA47_05860 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EEA47_05860 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EEA47_05865 PF00455 DeoR C terminal sensor domain EEA47_05865 PF08220 DeoR-like helix-turn-helix domain EEA47_05870 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EEA47_05870 PF01266 FAD dependent oxidoreductase EEA47_05875 PF01544 CorA-like Mg2+ transporter protein EEA47_05895 PF00356 Bacterial regulatory proteins, lacI family EEA47_05900 PF03466 LysR substrate binding domain EEA47_05900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_05910 PF00196 Bacterial regulatory proteins, luxR family EEA47_05940 PF00501 AMP-binding enzyme EEA47_05950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_05950 PF03466 LysR substrate binding domain EEA47_05955 PF03144 Elongation factor Tu domain 2 EEA47_05955 PF00009 Elongation factor Tu GTP binding domain EEA47_05955 PF14492 Elongation Factor G, domain II EEA47_05955 PF03764 Elongation factor G, domain IV EEA47_05955 PF00679 Elongation factor G C-terminus EEA47_05960 PF18073 Rubredoxin metal binding domain EEA47_05970 PF18429 Domain of unknown function (DUF5609) EEA47_05980 PF01048 Phosphorylase superfamily EEA47_05985 PF01676 Metalloenzyme superfamily EEA47_05990 PF02885 Glycosyl transferase family, helical bundle domain EEA47_05990 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain EEA47_05990 PF00591 Glycosyl transferase family, a/b domain EEA47_05995 PF01791 DeoC/LacD family aldolase EEA47_06000 PF07670 Nucleoside recognition EEA47_06000 PF07662 Na+ dependent nucleoside transporter C-terminus EEA47_06000 PF01773 Na+ dependent nucleoside transporter N-terminus EEA47_06005 PF01026 TatD related DNase EEA47_06015 PF03144 Elongation factor Tu domain 2 EEA47_06015 PF00009 Elongation factor Tu GTP binding domain EEA47_06015 PF16658 Class II release factor RF3, C-terminal domain EEA47_06035 PF13508 Acetyltransferase (GNAT) domain EEA47_06040 PF02036 SCP-2 sterol transfer family EEA47_06050 PF03707 Bacterial signalling protein N terminal repeat EEA47_06050 PF00990 Diguanylate cyclase, GGDEF domain EEA47_06050 PF00563 EAL domain EEA47_06055 PF01136 Peptidase family U32 EEA47_06060 PF01136 Peptidase family U32 EEA47_06065 PF01554 MatE EEA47_06075 PF07719 Tetratricopeptide repeat EEA47_06075 PF13181 Tetratricopeptide repeat EEA47_06080 PF00013 KH domain EEA47_06080 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EEA47_06080 PF01138 3' exoribonuclease family, domain 1 EEA47_06080 PF03725 3' exoribonuclease family, domain 2 EEA47_06080 PF00575 S1 RNA binding domain EEA47_06085 PF00312 Ribosomal protein S15 EEA47_06090 PF01509 TruB family pseudouridylate synthase (N terminal domain) EEA47_06090 PF09157 Pseudouridine synthase II TruB, C-terminal EEA47_06090 PF16198 tRNA pseudouridylate synthase B C-terminal domain EEA47_06095 PF02033 Ribosome-binding factor A EEA47_06100 PF00009 Elongation factor Tu GTP binding domain EEA47_06100 PF11987 Translation-initiation factor 2 EEA47_06100 PF08364 Bacterial translation initiation factor IF-2 associated region EEA47_06100 PF04760 Translation initiation factor IF-2, N-terminal region EEA47_06105 PF13184 NusA-like KH domain EEA47_06105 PF00575 S1 RNA binding domain EEA47_06105 PF08529 NusA N-terminal domain EEA47_06110 PF17384 RimP C-terminal SH3 domain EEA47_06110 PF02576 RimP N-terminal domain EEA47_06125 PF03840 Preprotein translocase SecG subunit EEA47_06135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEA47_06135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEA47_06135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEA47_06135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEA47_06140 PF00809 Pterin binding enzyme EEA47_06145 PF06480 FtsH Extracellular EEA47_06145 PF01434 Peptidase family M41 EEA47_06145 PF00004 ATPase family associated with various cellular activities (AAA) EEA47_06145 PF17862 AAA+ lid domain EEA47_06150 PF01728 FtsJ-like methyltransferase EEA47_06155 PF01985 CRS1 / YhbY (CRM) domain EEA47_06160 PF01272 Transcription elongation factor, GreA/GreB, C-term EEA47_06160 PF03449 Transcription elongation factor, N-terminal EEA47_06165 PF13609 Gram-negative porin EEA47_06170 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family EEA47_06180 PF00579 tRNA synthetases class I (W and Y) EEA47_06185 PF01551 Peptidase family M23 EEA47_06185 PF08525 Opacity-associated protein A N-terminal motif EEA47_06185 PF01476 LysM domain EEA47_06190 PF00873 AcrB/AcrD/AcrF family EEA47_06200 PF01521 Iron-sulphur cluster biosynthesis EEA47_06205 PF00202 Aminotransferase class-III EEA47_06210 PF01594 AI-2E family transporter EEA47_06215 PF05175 Methyltransferase small domain EEA47_06215 PF08468 Methyltransferase small domain N-terminal EEA47_06220 PF00072 Response regulator receiver domain EEA47_06220 PF09308 LuxQ, periplasmic EEA47_06220 PF00512 His Kinase A (phospho-acceptor) domain EEA47_06220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_06225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_06230 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_06235 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_06235 PF12911 N-terminal TM domain of oligopeptide transport permease C EEA47_06240 PF00005 ABC transporter EEA47_06240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_06245 PF00005 ABC transporter EEA47_06245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_06255 PF01869 BadF/BadG/BcrA/BcrD ATPase family EEA47_06260 PF00728 Glycosyl hydrolase family 20, catalytic domain EEA47_06260 PF02838 Glycosyl hydrolase family 20, domain 2 EEA47_06265 PF06165 Glycosyltransferase family 36 EEA47_06265 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain EEA47_06270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEA47_06270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEA47_06270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEA47_06270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEA47_06275 PF00005 ABC transporter EEA47_06275 PF08402 TOBE domain EEA47_06285 PF13416 Bacterial extracellular solute-binding protein EEA47_06290 PF00909 Ammonium Transporter Family EEA47_06295 PF00543 Nitrogen regulatory protein P-II EEA47_06300 PF06062 Uncharacterised protein family (UPF0231) EEA47_06305 PF11791 Aconitate B N-terminal domain EEA47_06305 PF06434 Aconitate hydratase 2 N-terminus EEA47_06305 PF00330 Aconitase family (aconitate hydratase) EEA47_06310 PF01734 Patatin-like phospholipase EEA47_06315 PF00912 Transglycosylase EEA47_06315 PF00905 Penicillin binding protein transpeptidase domain EEA47_06315 PF14814 Bifunctional transglycosylase second domain EEA47_06320 PF00270 DEAD/DEAH box helicase EEA47_06320 PF04408 Helicase associated domain (HA2) EEA47_06320 PF00271 Helicase conserved C-terminal domain EEA47_06320 PF08482 ATP-dependent helicase C-terminal EEA47_06325 PF03749 Sugar fermentation stimulation protein RE domain EEA47_06325 PF17746 SfsA N-terminal OB domain EEA47_06330 PF01258 Prokaryotic dksA/traR C4-type zinc finger EEA47_06335 PF00749 tRNA synthetases class I (E and Q), catalytic domain EEA47_06340 PF12627 Probable RNA and SrmB- binding site of polymerase A EEA47_06340 PF12626 Polymerase A arginine-rich C-terminus EEA47_06340 PF01743 Poly A polymerase head domain EEA47_06345 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EEA47_06350 PF02548 Ketopantoate hydroxymethyltransferase EEA47_06355 PF02569 Pantoate-beta-alanine ligase EEA47_06360 PF03279 Bacterial lipid A biosynthesis acyltransferase EEA47_06370 PF01061 ABC-2 type transporter EEA47_06375 PF00005 ABC transporter EEA47_06380 PF01740 STAS domain EEA47_06380 PF00916 Sulfate permease family EEA47_06385 PF00484 Carbonic anhydrase EEA47_06390 PF00156 Phosphoribosyl transferase domain EEA47_06395 PF00440 Bacterial regulatory proteins, tetR family EEA47_06400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEA47_06400 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_06405 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EEA47_06405 PF00364 Biotin-requiring enzyme EEA47_06405 PF02817 e3 binding domain EEA47_06410 PF17831 Pyruvate dehydrogenase E1 component middle domain EEA47_06410 PF00456 Transketolase, thiamine diphosphate binding domain EEA47_06415 PF00392 Bacterial regulatory proteins, gntR family EEA47_06415 PF07729 FCD domain EEA47_06420 PF01510 N-acetylmuramoyl-L-alanine amidase EEA47_06425 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EEA47_06425 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EEA47_06435 PF00437 Type II/IV secretion system protein EEA47_06435 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EEA47_06440 PF00482 Type II secretion system (T2SS), protein F EEA47_06445 PF06750 Bacterial Peptidase A24 N-terminal domain EEA47_06445 PF01478 Type IV leader peptidase family EEA47_06450 PF01121 Dephospho-CoA kinase EEA47_06455 PF07072 Cell division protein EEA47_06460 PF03884 DNA gyrase inhibitor YacG EEA47_06465 PF01245 Ribosomal protein L19 EEA47_06470 PF01746 tRNA (Guanine-1)-methyltransferase EEA47_06475 PF05239 PRC-barrel domain EEA47_06475 PF01782 RimM N-terminal domain EEA47_06480 PF00886 Ribosomal protein S16 EEA47_06485 PF02978 Signal peptide binding domain EEA47_06485 PF02881 SRP54-type protein, helical bundle domain EEA47_06485 PF00448 SRP54-type protein, GTPase domain EEA47_06490 PF01578 Cytochrome C assembly protein EEA47_06495 PF00571 CBS domain EEA47_06495 PF03471 Transporter associated domain EEA47_06495 PF01595 Cyclin M transmembrane N-terminal domain EEA47_06500 PF02664 S-Ribosylhomocysteinase (LuxS) EEA47_06510 PF04262 Glutamate-cysteine ligase EEA47_06515 PF05193 Peptidase M16 inactive domain EEA47_06515 PF00675 Insulinase (Peptidase family M16) EEA47_06520 PF09335 SNARE associated Golgi protein EEA47_06525 PF00107 Zinc-binding dehydrogenase EEA47_06525 PF08240 Alcohol dehydrogenase GroES-like domain EEA47_06530 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit EEA47_06535 PF00682 HMGL-like EEA47_06535 PF00364 Biotin-requiring enzyme EEA47_06535 PF02436 Conserved carboxylase domain EEA47_06540 PF04277 Oxaloacetate decarboxylase, gamma chain EEA47_06595 PF02599 Global regulator protein family EEA47_06600 PF00696 Amino acid kinase family EEA47_06600 PF01842 ACT domain EEA47_06600 PF13840 ACT domain EEA47_06605 PF02272 DHHA1 domain EEA47_06605 PF01411 tRNA synthetases class II (A) EEA47_06605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EEA47_06610 PF02631 RecX family EEA47_06620 PF00154 recA bacterial DNA recombination protein EEA47_06625 PF02464 Competence-damaged protein EEA47_06630 PF05188 MutS domain II EEA47_06630 PF01624 MutS domain I EEA47_06630 PF05190 MutS family domain IV EEA47_06630 PF00488 MutS domain V EEA47_06630 PF05192 MutS domain III EEA47_06635 PF04542 Sigma-70 region 2 EEA47_06635 PF04545 Sigma-70, region 4 EEA47_06635 PF04539 Sigma-70 region 3 EEA47_06635 PF00140 Sigma-70 factor, region 1.2 EEA47_06640 PF01551 Peptidase family M23 EEA47_06640 PF01476 LysM domain EEA47_06650 PF01975 Survival protein SurE EEA47_06655 PF01142 tRNA pseudouridine synthase D (TruD) EEA47_06660 PF02542 YgbB family EEA47_06665 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EEA47_06670 PF04977 Septum formation initiator EEA47_06675 PF03952 Enolase, N-terminal domain EEA47_06675 PF00113 Enolase, C-terminal TIM barrel domain EEA47_06680 PF00117 Glutamine amidotransferase class-I EEA47_06680 PF06418 CTP synthase N-terminus EEA47_06685 PF03819 MazG nucleotide pyrophosphohydrolase domain EEA47_06690 PF02824 TGS domain EEA47_06690 PF04607 Region found in RelA / SpoT proteins EEA47_06690 PF13291 ACT domain EEA47_06700 PF05958 tRNA (Uracil-5-)-methyltransferase EEA47_06700 PF01938 TRAM domain EEA47_06710 PF00072 Response regulator receiver domain EEA47_06710 PF00512 His Kinase A (phospho-acceptor) domain EEA47_06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_06710 PF00672 HAMP domain EEA47_06710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EEA47_06710 PF01627 Hpt domain EEA47_06715 PF01648 4'-phosphopantetheinyl transferase superfamily EEA47_06720 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EEA47_06725 PF02565 Recombination protein O C terminal EEA47_06725 PF11967 Recombination protein O N terminal EEA47_06730 PF01926 50S ribosome-binding GTPase EEA47_06730 PF07650 KH domain EEA47_06735 PF14622 Ribonuclease-III-like EEA47_06735 PF00035 Double-stranded RNA binding motif EEA47_06740 PF10502 Signal peptidase, peptidase S26 EEA47_06745 PF00009 Elongation factor Tu GTP binding domain EEA47_06745 PF00679 Elongation factor G C-terminus EEA47_06745 PF06421 GTP-binding protein LepA C-terminus EEA47_06745 PF03144 Elongation factor Tu domain 2 EEA47_06755 PF03888 MucB/RseB N-terminal domain EEA47_06755 PF17188 MucB/RseB C-terminal domain EEA47_06760 PF03873 Anti sigma-E protein RseA, C-terminal domain EEA47_06760 PF03872 Anti sigma-E protein RseA, N-terminal domain EEA47_06765 PF08281 Sigma-70, region 4 EEA47_06765 PF04542 Sigma-70 region 2 EEA47_06775 PF02910 Fumarate reductase flavoprotein C-term EEA47_06775 PF00890 FAD binding domain EEA47_06785 PF03937 Flavinator of succinate dehydrogenase EEA47_06805 PF01494 FAD binding domain EEA47_06810 PF01494 FAD binding domain EEA47_06815 PF03695 Uncharacterised protein family (UPF0149) EEA47_06825 PF05164 Cell division protein ZapA EEA47_06835 PF01812 5-formyltetrahydrofolate cyclo-ligase family EEA47_06840 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EEA47_06845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEA47_06845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEA47_06845 PF01842 ACT domain EEA47_06850 PF04402 Protein of unknown function (DUF541) EEA47_06855 PF03466 LysR substrate binding domain EEA47_06855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_06860 PF01810 LysE type translocator EEA47_06870 PF05552 Conserved TM helix EEA47_06870 PF00924 Mechanosensitive ion channel EEA47_06875 PF01116 Fructose-bisphosphate aldolase class-II EEA47_06880 PF00162 Phosphoglycerate kinase EEA47_06885 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EEA47_06885 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EEA47_06890 PF07715 TonB-dependent Receptor Plug Domain EEA47_06890 PF00593 TonB dependent receptor EEA47_06895 PF03466 LysR substrate binding domain EEA47_06895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_06900 PF00456 Transketolase, thiamine diphosphate binding domain EEA47_06900 PF02779 Transketolase, pyrimidine binding domain EEA47_06900 PF02780 Transketolase, C-terminal domain EEA47_06910 PF00438 S-adenosylmethionine synthetase, N-terminal domain EEA47_06910 PF02772 S-adenosylmethionine synthetase, central domain EEA47_06910 PF02773 S-adenosylmethionine synthetase, C-terminal domain EEA47_06920 PF10263 SprT-like family EEA47_06920 PF17283 SprT-like zinc ribbon domain EEA47_06925 PF04231 Endonuclease I EEA47_06930 PF04452 RNA methyltransferase EEA47_06935 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EEA47_06935 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EEA47_06940 PF02622 Uncharacterized ACR, COG1678 EEA47_06945 PF03652 Holliday junction resolvase EEA47_06950 PF00437 Type II/IV secretion system protein EEA47_06955 PF00437 Type II/IV secretion system protein EEA47_06960 PF01168 Alanine racemase, N-terminal domain EEA47_06965 PF14748 Pyrroline-5-carboxylate reductase dimerisation EEA47_06965 PF03807 NADP oxidoreductase coenzyme F420-dependent EEA47_06970 PF02325 YGGT family EEA47_06975 PF02594 Uncharacterised ACR, YggU family COG1872 EEA47_06985 PF01725 Ham1 family EEA47_06990 PF06969 HemN C-terminal domain EEA47_06990 PF04055 Radical SAM superfamily EEA47_06995 PF04960 Glutaminase EEA47_07000 PF02086 D12 class N6 adenine-specific DNA methyltransferase EEA47_07005 PF02390 Putative methyltransferase EEA47_07010 PF00730 HhH-GPD superfamily base excision DNA repair protein EEA47_07010 PF00633 Helix-hairpin-helix motif EEA47_07010 PF14815 NUDIX domain EEA47_07015 PF04362 Bacterial Fe(2+) trafficking EEA47_07020 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain EEA47_07020 PF01464 Transglycosylase SLT domain EEA47_07060 PF00672 HAMP domain EEA47_07060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_07060 PF17200 Single Cache domain 2 EEA47_07095 PF00171 Aldehyde dehydrogenase family EEA47_07145 PF00356 Bacterial regulatory proteins, lacI family EEA47_07150 PF04794 YdjC-like protein EEA47_07155 PF02056 Family 4 glycosyl hydrolase EEA47_07155 PF11975 Family 4 glycosyl hydrolase C-terminal domain EEA47_07160 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EEA47_07165 PF02378 Phosphotransferase system, EIIC EEA47_07170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EEA47_07175 PF01522 Polysaccharide deacetylase EEA47_07190 PF10011 Predicted membrane protein (DUF2254) EEA47_07200 PF03739 Lipopolysaccharide export system permease LptF/LptG EEA47_07205 PF03739 Lipopolysaccharide export system permease LptF/LptG EEA47_07210 PF00883 Cytosol aminopeptidase family, catalytic domain EEA47_07210 PF02789 Cytosol aminopeptidase family, N-terminal domain EEA47_07215 PF04364 DNA polymerase III chi subunit, HolC EEA47_07220 PF08264 Anticodon-binding domain of tRNA EEA47_07220 PF00133 tRNA synthetases class I (I, L, M and V) EEA47_07220 PF10458 Valyl tRNA synthetase tRNA binding arm EEA47_07230 PF00583 Acetyltransferase (GNAT) family EEA47_07240 PF06877 Regulator of ribonuclease activity B EEA47_07250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EEA47_07250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EEA47_07260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EEA47_07260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EEA47_07265 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain EEA47_07265 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain EEA47_07270 PF01042 Endoribonuclease L-PSP EEA47_07275 PF01553 Acyltransferase EEA47_07280 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EEA47_07285 PF01722 BolA-like protein EEA47_07295 PF05494 MlaC protein EEA47_07300 PF02470 MlaD protein EEA47_07305 PF02405 Permease MlaE EEA47_07310 PF00005 ABC transporter EEA47_07315 PF01699 Sodium/calcium exchanger protein EEA47_07320 PF00571 CBS domain EEA47_07320 PF01380 SIS domain EEA47_07330 PF03968 OstA-like protein EEA47_07335 PF00005 ABC transporter EEA47_07335 PF12399 Branched-chain amino acid ATP-binding cassette transporter EEA47_07340 PF04963 Sigma-54 factor, core binding domain EEA47_07340 PF04552 Sigma-54, DNA binding domain EEA47_07340 PF00309 Sigma-54 factor, Activator interacting domain (AID) EEA47_07345 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EEA47_07350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEA47_07355 PF03668 P-loop ATPase protein family EEA47_07360 PF00381 PTS HPr component phosphorylation site EEA47_07365 PF00571 CBS domain EEA47_07365 PF03448 MgtE intracellular N domain EEA47_07365 PF01769 Divalent cation transporter EEA47_07370 PF01523 Putative modulator of DNA gyrase EEA47_07375 PF04751 Protein of unknown function (DUF615) EEA47_07380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEA47_07380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEA47_07385 PF00849 RNA pseudouridylate synthase EEA47_07395 PF18339 RapA N-terminal Tudor like domain 1 EEA47_07395 PF18337 RapA N-terminal Tudor like domain EEA47_07395 PF00176 SNF2 family N-terminal domain EEA47_07395 PF00271 Helicase conserved C-terminal domain EEA47_07395 PF12137 RNA polymerase recycling family C-terminal EEA47_07400 PF02562 PhoH-like protein EEA47_07400 PF13638 PIN domain EEA47_07405 PF01523 Putative modulator of DNA gyrase EEA47_07410 PF00795 Carbon-nitrogen hydrolase EEA47_07415 PF13502 AsmA-like C-terminal region EEA47_07415 PF13116 Protein of unknown function EEA47_07420 PF10150 Ribonuclease E/G family EEA47_07420 PF00575 S1 RNA binding domain EEA47_07425 PF02545 Maf-like protein EEA47_07430 PF04093 rod shape-determining protein MreD EEA47_07435 PF04085 rod shape-determining protein MreC EEA47_07475 PF07963 Prokaryotic N-terminal methylation motif EEA47_07485 PF00482 Type II secretion system (T2SS), protein F EEA47_07490 PF00437 Type II/IV secretion system protein EEA47_07490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EEA47_07500 PF13401 AAA domain EEA47_07500 PF01471 Putative peptidoglycan binding domain EEA47_07505 PF00263 Bacterial type II and III secretion system protein EEA47_07505 PF03958 Bacterial type II/III secretion system short domain EEA47_07525 PF00563 EAL domain EEA47_07525 PF17157 Gammaproteobacterial periplasmic sensor domain EEA47_07525 PF00990 Diguanylate cyclase, GGDEF domain EEA47_07530 PF00436 Single-strand binding protein family EEA47_07535 PF00196 Bacterial regulatory proteins, luxR family EEA47_07540 PF00483 Nucleotidyl transferase EEA47_07545 PF17755 UvrA DNA-binding domain EEA47_07545 PF17760 UvrA interaction domain EEA47_07545 PF00005 ABC transporter EEA47_07555 PF00266 Aminotransferase class-V EEA47_07565 PF00696 Amino acid kinase family EEA47_07565 PF01842 ACT domain EEA47_07570 PF02310 B12 binding domain EEA47_07570 PF02607 B12 binding domain EEA47_07570 PF02965 Vitamin B12 dependent methionine synthase, activation domain EEA47_07570 PF00809 Pterin binding enzyme EEA47_07570 PF02574 Homocysteine S-methyltransferase EEA47_07575 PF00999 Sodium/hydrogen exchanger family EEA47_07640 PF01507 Phosphoadenosine phosphosulfate reductase family EEA47_07645 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EEA47_07645 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EEA47_07650 PF00667 FAD binding domain EEA47_07650 PF00175 Oxidoreductase NAD-binding domain EEA47_07650 PF00258 Flavodoxin EEA47_07670 PF01207 Dihydrouridine synthase (Dus) EEA47_07675 PF01475 Ferric uptake regulator family EEA47_07685 PF00342 Phosphoglucose isomerase EEA47_07690 PF01894 Uncharacterised protein family UPF0047 EEA47_07695 PF00842 Alanine racemase, C-terminal domain EEA47_07695 PF01168 Alanine racemase, N-terminal domain EEA47_07700 PF00772 DnaB-like helicase N terminal domain EEA47_07700 PF03796 DnaB-like helicase C terminal domain EEA47_07710 PF03948 Ribosomal protein L9, C-terminal domain EEA47_07710 PF01281 Ribosomal protein L9, N-terminal domain EEA47_07715 PF01084 Ribosomal protein S18 EEA47_07720 PF00436 Single-strand binding protein family EEA47_07725 PF01250 Ribosomal protein S6 EEA47_07730 PF00834 Ribulose-phosphate 3 epimerase family EEA47_07735 PF02086 D12 class N6 adenine-specific DNA methyltransferase EEA47_07745 PF01761 3-dehydroquinate synthase EEA47_07750 PF01202 Shikimate kinase EEA47_07755 PF11741 AMIN domain EEA47_07755 PF00263 Bacterial type II and III secretion system protein EEA47_07755 PF03958 Bacterial type II/III secretion system short domain EEA47_07755 PF07660 Secretin and TonB N terminus short domain EEA47_07760 PF04351 Pilus assembly protein, PilP EEA47_07770 PF05137 Fimbrial assembly protein (PilN) EEA47_07780 PF17092 Penicillin-binding protein OB-like domain EEA47_07780 PF00912 Transglycosylase EEA47_07780 PF00905 Penicillin binding protein transpeptidase domain EEA47_07785 PF03466 LysR substrate binding domain EEA47_07785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_07790 PF00462 Glutaredoxin EEA47_07790 PF08534 Redoxin EEA47_07795 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_07795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEA47_07805 PF00583 Acetyltransferase (GNAT) family EEA47_07805 PF14698 Argininosuccinate lyase C-terminal EEA47_07805 PF00206 Lyase EEA47_07810 PF00764 Arginosuccinate synthase EEA47_07815 PF00696 Amino acid kinase family EEA47_07820 PF01118 Semialdehyde dehydrogenase, NAD binding domain EEA47_07820 PF02774 Semialdehyde dehydrogenase, dimerisation domain EEA47_07825 PF01546 Peptidase family M20/M25/M40 EEA47_07825 PF07687 Peptidase dimerisation domain EEA47_07830 PF00311 Phosphoenolpyruvate carboxylase EEA47_07840 PF02219 Methylenetetrahydrofolate reductase EEA47_07845 PF00696 Amino acid kinase family EEA47_07845 PF00742 Homoserine dehydrogenase EEA47_07845 PF03447 Homoserine dehydrogenase, NAD binding domain EEA47_07850 PF01053 Cys/Met metabolism PLP-dependent enzyme EEA47_07855 PF01340 Met Apo-repressor, MetJ EEA47_07860 PF00390 Malic enzyme, N-terminal domain EEA47_07860 PF03949 Malic enzyme, NAD binding domain EEA47_07865 PF00210 Ferritin-like domain EEA47_07870 PF04324 BFD-like [2Fe-2S] binding domain EEA47_07875 PF03144 Elongation factor Tu domain 2 EEA47_07875 PF03143 Elongation factor Tu C-terminal domain EEA47_07875 PF00009 Elongation factor Tu GTP binding domain EEA47_07880 PF00679 Elongation factor G C-terminus EEA47_07880 PF14492 Elongation Factor G, domain II EEA47_07880 PF03764 Elongation factor G, domain IV EEA47_07880 PF00009 Elongation factor Tu GTP binding domain EEA47_07880 PF03144 Elongation factor Tu domain 2 EEA47_07885 PF00177 Ribosomal protein S7p/S5e EEA47_07890 PF00164 Ribosomal protein S12/S23 EEA47_07895 PF04077 DsrH like protein EEA47_07900 PF02635 DsrE/DsrF-like family EEA47_07905 PF02635 DsrE/DsrF-like family EEA47_07910 PF13309 HTH domain EEA47_07910 PF08348 YheO-like PAS domain EEA47_07915 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EEA47_07915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEA47_07925 PF04102 SlyX EEA47_07930 PF01112 Asparaginase EEA47_07935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEA47_07945 PF02254 TrkA-N domain EEA47_07945 PF00999 Sodium/hydrogen exchanger family EEA47_07950 PF02525 Flavodoxin-like fold EEA47_07955 PF12848 ABC transporter EEA47_07955 PF00005 ABC transporter EEA47_07965 PF00561 alpha/beta hydrolase fold EEA47_07970 PF06794 Uncharacterised protein family (UPF0270) EEA47_07975 PF00485 Phosphoribulokinase / Uridine kinase family EEA47_07980 PF00027 Cyclic nucleotide-binding domain EEA47_07980 PF13545 Crp-like helix-turn-helix domain EEA47_07990 PF00171 Aldehyde dehydrogenase family EEA47_07995 PF04958 Arginine N-succinyltransferase beta subunit EEA47_08000 PF00202 Aminotransferase class-III EEA47_08005 PF00117 Glutamine amidotransferase class-I EEA47_08020 PF00579 tRNA synthetases class I (W and Y) EEA47_08025 PF13419 Haloacid dehalogenase-like hydrolase EEA47_08030 PF08032 RNA 2'-O ribose methyltransferase substrate binding EEA47_08030 PF00588 SpoU rRNA Methylase family EEA47_08035 PF08461 Ribonuclease R winged-helix domain EEA47_08035 PF08206 Ribonuclease B OB domain EEA47_08035 PF00773 RNB domain EEA47_08035 PF00575 S1 RNA binding domain EEA47_08035 PF17876 Cold shock domain EEA47_08040 PF02082 Transcriptional regulator EEA47_08045 PF00970 Oxidoreductase FAD-binding domain EEA47_08045 PF00042 Globin EEA47_08045 PF00175 Oxidoreductase NAD-binding domain EEA47_08050 PF08238 Sel1 repeat EEA47_08060 PF00709 Adenylosuccinate synthetase EEA47_08065 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) EEA47_08070 PF01145 SPFH domain / Band 7 family EEA47_08075 PF01145 SPFH domain / Band 7 family EEA47_08075 PF12221 Bacterial membrane protein N terminal EEA47_08080 PF13167 GTP-binding GTPase N-terminal EEA47_08080 PF01926 50S ribosome-binding GTPase EEA47_08080 PF16360 GTP-binding GTPase Middle Region EEA47_08085 PF17209 Hfq protein EEA47_08095 PF01119 DNA mismatch repair protein, C-terminal domain EEA47_08095 PF08676 MutL C terminal dimerisation domain EEA47_08100 PF01520 N-acetylmuramoyl-L-alanine amidase EEA47_08105 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EEA47_08115 PF08331 Domain of unknown function (DUF1730) EEA47_08180 PF00929 Exonuclease EEA47_08185 PF03193 RsgA GTPase EEA47_08190 PF02666 Phosphatidylserine decarboxylase EEA47_08195 PF03600 Citrate transporter EEA47_08195 PF02080 TrkA-C domain EEA47_08205 PF01676 Metalloenzyme superfamily EEA47_08205 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EEA47_08210 PF00581 Rhodanese-like domain EEA47_08215 PF02556 Preprotein translocase subunit SecB EEA47_08220 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EEA47_08220 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EEA47_08225 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_08225 PF06426 Serine acetyltransferase, N-terminal EEA47_08230 PF01551 Peptidase family M23 EEA47_08240 PF08360 QacR-like protein, C-terminal region EEA47_08240 PF00440 Bacterial regulatory proteins, tetR family EEA47_08250 PF00152 tRNA synthetases class II (D, K and N) EEA47_08255 PF02910 Fumarate reductase flavoprotein C-term EEA47_08255 PF00890 FAD binding domain EEA47_08260 PF13183 4Fe-4S dicluster domain EEA47_08260 PF13085 2Fe-2S iron-sulfur cluster binding domain EEA47_08265 PF02300 Fumarate reductase subunit C EEA47_08270 PF02313 Fumarate reductase subunit D EEA47_08280 PF01132 Elongation factor P (EF-P) OB domain EEA47_08280 PF08207 Elongation factor P (EF-P) KOW-like domain EEA47_08280 PF09285 Elongation factor P, C-terminal EEA47_08285 PF04055 Radical SAM superfamily EEA47_08290 PF02308 MgtC family EEA47_08300 PF01348 Type II intron maturase EEA47_08300 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EEA47_08305 PF00118 TCP-1/cpn60 chaperonin family EEA47_08310 PF00166 Chaperonin 10 Kd subunit EEA47_08315 PF01554 MatE EEA47_08320 PF00365 Phosphofructokinase EEA47_08325 PF16916 Dimerisation domain of Zinc Transporter EEA47_08325 PF01545 Cation efflux family EEA47_08330 PF07813 LTXXQ motif family protein EEA47_08335 PF00486 Transcriptional regulatory protein, C terminal EEA47_08335 PF00072 Response regulator receiver domain EEA47_08340 PF16527 Two-component sensor protein CpxA, periplasmic domain EEA47_08340 PF00512 His Kinase A (phospho-acceptor) domain EEA47_08340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_08340 PF00672 HAMP domain EEA47_08345 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EEA47_08345 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EEA47_08350 PF00588 SpoU rRNA Methylase family EEA47_08355 PF04186 FxsA cytoplasmic membrane protein EEA47_08360 PF00206 Lyase EEA47_08360 PF10415 Fumarase C C-terminus EEA47_08365 PF03605 Anaerobic c4-dicarboxylate membrane transporter EEA47_08370 PF11412 Disulphide bond corrector protein DsbC EEA47_08370 PF02683 Cytochrome C biogenesis protein transmembrane region EEA47_08375 PF00072 Response regulator receiver domain EEA47_08375 PF00196 Bacterial regulatory proteins, luxR family EEA47_08380 PF03471 Transporter associated domain EEA47_08380 PF00999 Sodium/hydrogen exchanger family EEA47_08380 PF02080 TrkA-C domain EEA47_08390 PF00474 Sodium:solute symporter family EEA47_08405 PF00206 Lyase EEA47_08405 PF10415 Fumarase C C-terminus EEA47_08410 PF00512 His Kinase A (phospho-acceptor) domain EEA47_08410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_08410 PF09308 LuxQ, periplasmic EEA47_08410 PF00072 Response regulator receiver domain EEA47_08415 PF12832 MFS_1 like family EEA47_08430 PF16177 Acetyl-coenzyme A synthetase N-terminus EEA47_08430 PF00501 AMP-binding enzyme EEA47_08430 PF13193 AMP-binding enzyme C-terminal domain EEA47_08435 PF01220 Dehydroquinase class II EEA47_08440 PF00364 Biotin-requiring enzyme EEA47_08445 PF00289 Biotin carboxylase, N-terminal domain EEA47_08445 PF02785 Biotin carboxylase C-terminal domain EEA47_08445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EEA47_08460 PF01207 Dihydrouridine synthase (Dus) EEA47_08465 PF02954 Bacterial regulatory protein, Fis family EEA47_08485 PF00589 Phage integrase family EEA47_08485 PF14659 Phage integrase, N-terminal SAM-like domain EEA47_08485 PF13356 Arm DNA-binding domain EEA47_08495 PF12848 ABC transporter EEA47_08495 PF00005 ABC transporter EEA47_08550 PF01276 Orn/Lys/Arg decarboxylase, major domain EEA47_08550 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain EEA47_08550 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain EEA47_08555 PF13520 Amino acid permease EEA47_08565 PF18500 CadC C-terminal domain 1 EEA47_08565 PF00486 Transcriptional regulatory protein, C terminal EEA47_08570 PF13411 MerR HTH family regulatory protein EEA47_08580 PF02142 MGS-like domain EEA47_08580 PF01808 AICARFT/IMPCHase bienzyme EEA47_08585 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EEA47_08585 PF02843 Phosphoribosylglycinamide synthetase, C domain EEA47_08585 PF02844 Phosphoribosylglycinamide synthetase, N domain EEA47_08595 PF00216 Bacterial DNA-binding protein EEA47_08600 PF01595 Cyclin M transmembrane N-terminal domain EEA47_08600 PF00571 CBS domain EEA47_08605 PF04222 Protein of unknown function (DUF416) EEA47_08610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEA47_08615 PF03167 Uracil DNA glycosylase superfamily EEA47_08620 PF01208 Uroporphyrinogen decarboxylase (URO-D) EEA47_08625 PF09297 NADH pyrophosphatase zinc ribbon domain EEA47_08625 PF00293 NUDIX domain EEA47_08630 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ EEA47_08635 PF05000 RNA polymerase Rpb1, domain 4 EEA47_08635 PF04998 RNA polymerase Rpb1, domain 5 EEA47_08635 PF00623 RNA polymerase Rpb1, domain 2 EEA47_08635 PF04997 RNA polymerase Rpb1, domain 1 EEA47_08635 PF04983 RNA polymerase Rpb1, domain 3 EEA47_08640 PF04563 RNA polymerase beta subunit EEA47_08640 PF04565 RNA polymerase Rpb2, domain 3 EEA47_08640 PF10385 RNA polymerase beta subunit external 1 domain EEA47_08640 PF00562 RNA polymerase Rpb2, domain 6 EEA47_08640 PF04560 RNA polymerase Rpb2, domain 7 EEA47_08640 PF04561 RNA polymerase Rpb2, domain 2 EEA47_08645 PF00542 Ribosomal protein L7/L12 C-terminal domain EEA47_08645 PF16320 Ribosomal protein L7/L12 dimerisation domain EEA47_08650 PF00466 Ribosomal protein L10 EEA47_08655 PF00687 Ribosomal protein L1p/L10e family EEA47_08660 PF00298 Ribosomal protein L11, RNA binding domain EEA47_08660 PF03946 Ribosomal protein L11, N-terminal domain EEA47_08665 PF00467 KOW motif EEA47_08665 PF02357 Transcription termination factor nusG EEA47_08670 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EEA47_08680 PF03143 Elongation factor Tu C-terminal domain EEA47_08680 PF03144 Elongation factor Tu domain 2 EEA47_08680 PF00009 Elongation factor Tu GTP binding domain EEA47_08710 PF00485 Phosphoribulokinase / Uridine kinase family EEA47_08715 PF02237 Biotin protein ligase C terminal domain EEA47_08715 PF03099 Biotin/lipoate A/B protein ligase family EEA47_08715 PF08279 HTH domain EEA47_08720 PF01565 FAD binding domain EEA47_08720 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EEA47_08730 PF13091 PLD-like domain EEA47_08795 PF01177 Asp/Glu/Hydantoin racemase EEA47_08805 PF00593 TonB dependent receptor EEA47_08805 PF07715 TonB-dependent Receptor Plug Domain EEA47_08810 PF05958 tRNA (Uracil-5-)-methyltransferase EEA47_08865 PF04002 RadC-like JAB domain EEA47_08910 PF02028 BCCT, betaine/carnitine/choline family transporter EEA47_08935 PF00128 Alpha amylase, catalytic domain EEA47_08935 PF02806 Alpha amylase, C-terminal all-beta domain EEA47_08950 PF03707 Bacterial signalling protein N terminal repeat EEA47_08950 PF00563 EAL domain EEA47_08950 PF00990 Diguanylate cyclase, GGDEF domain EEA47_08955 PF00563 EAL domain EEA47_08955 PF13426 PAS domain EEA47_08955 PF00990 Diguanylate cyclase, GGDEF domain EEA47_08970 PF00440 Bacterial regulatory proteins, tetR family EEA47_08975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEA47_08975 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_08980 PF01554 MatE EEA47_08985 PF04072 Leucine carboxyl methyltransferase EEA47_08995 PF01726 LexA DNA binding domain EEA47_08995 PF00717 Peptidase S24-like EEA47_09005 PF01553 Acyltransferase EEA47_09010 PF01040 UbiA prenyltransferase family EEA47_09015 PF04345 Chorismate lyase EEA47_09020 PF03748 Flagellar basal body-associated protein FliL EEA47_09025 PF01694 Rhomboid family EEA47_09025 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease EEA47_09030 PF00581 Rhodanese-like domain EEA47_09040 PF04545 Sigma-70, region 4 EEA47_09040 PF00140 Sigma-70 factor, region 1.2 EEA47_09040 PF04542 Sigma-70 region 2 EEA47_09045 PF18075 FtsX extracellular domain EEA47_09050 PF00005 ABC transporter EEA47_09055 PF02881 SRP54-type protein, helical bundle domain EEA47_09055 PF00448 SRP54-type protein, GTPase domain EEA47_09070 PF01914 MarC family integral membrane protein EEA47_09095 PF10694 Protein of unknown function (DUF2500) EEA47_09115 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EEA47_09115 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EEA47_09120 PF01022 Bacterial regulatory protein, arsR family EEA47_09125 PF00563 EAL domain EEA47_09125 PF08668 HDOD domain EEA47_09130 PF01810 LysE type translocator EEA47_09135 PF12146 Serine aminopeptidase, S33 EEA47_09155 PF03942 DTW domain EEA47_09160 PF00563 EAL domain EEA47_09160 PF10442 FIST C domain EEA47_09160 PF00990 Diguanylate cyclase, GGDEF domain EEA47_09160 PF08495 FIST N domain EEA47_09165 PF13419 Haloacid dehalogenase-like hydrolase EEA47_09170 PF02899 Phage integrase, N-terminal SAM-like domain EEA47_09170 PF00589 Phage integrase family EEA47_09180 PF01678 Diaminopimelate epimerase EEA47_09185 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EEA47_09185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EEA47_09195 PF01491 Frataxin-like domain EEA47_09200 PF12633 Adenylate cyclase NT domain EEA47_09200 PF01295 Adenylate cyclase, class-I EEA47_09205 PF03900 Porphobilinogen deaminase, C-terminal domain EEA47_09205 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EEA47_09210 PF02602 Uroporphyrinogen-III synthase HemD EEA47_09215 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase EEA47_09220 PF07219 HemY protein N-terminus EEA47_09260 PF00175 Oxidoreductase NAD-binding domain EEA47_09265 PF00111 2Fe-2S iron-sulfur cluster binding domain EEA47_09270 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EEA47_09280 PF07497 Rho termination factor, RNA-binding domain EEA47_09280 PF07498 Rho termination factor, N-terminal domain EEA47_09280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEA47_09285 PF00085 Thioredoxin EEA47_09290 PF00270 DEAD/DEAH box helicase EEA47_09290 PF00271 Helicase conserved C-terminal domain EEA47_09295 PF02541 Ppx/GppA phosphatase family EEA47_09305 PF02592 Putative vitamin uptake transporter EEA47_09315 PF16124 RecQ zinc-binding EEA47_09315 PF00270 DEAD/DEAH box helicase EEA47_09315 PF09382 RQC domain EEA47_09315 PF00570 HRDC domain EEA47_09315 PF00271 Helicase conserved C-terminal domain EEA47_09320 PF00892 EamA-like transporter family EEA47_09330 PF01810 LysE type translocator EEA47_09345 PF00580 UvrD/REP helicase N-terminal domain EEA47_09345 PF13361 UvrD-like helicase C-terminal domain EEA47_09355 PF05114 Protein of unknown function (DUF692) EEA47_09375 PF07690 Major Facilitator Superfamily EEA47_09380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_09380 PF03466 LysR substrate binding domain EEA47_09385 PF01321 Creatinase/Prolidase N-terminal domain EEA47_09385 PF00557 Metallopeptidase family M24 EEA47_09390 PF06968 Biotin and Thiamin Synthesis associated domain EEA47_09390 PF04055 Radical SAM superfamily EEA47_09395 PF05690 Thiazole biosynthesis protein ThiG EEA47_09400 PF02597 ThiS family EEA47_09405 PF00899 ThiF family EEA47_09410 PF02581 Thiamine monophosphate synthase EEA47_09415 PF13667 ThiC-associated domain EEA47_09415 PF01964 Radical SAM ThiC family EEA47_09420 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EEA47_09425 PF00394 Multicopper oxidase EEA47_09425 PF07731 Multicopper oxidase EEA47_09425 PF07732 Multicopper oxidase EEA47_09470 PF12724 Flavodoxin domain EEA47_09475 PF02386 Cation transport protein EEA47_09480 PF09186 Domain of unknown function (DUF1949) EEA47_09480 PF01205 Uncharacterized protein family UPF0029 EEA47_09485 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EEA47_09485 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EEA47_09485 PF00378 Enoyl-CoA hydratase/isomerase EEA47_09490 PF02803 Thiolase, C-terminal domain EEA47_09490 PF00108 Thiolase, N-terminal domain EEA47_09495 PF00107 Zinc-binding dehydrogenase EEA47_09495 PF08240 Alcohol dehydrogenase GroES-like domain EEA47_09500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_09500 PF03466 LysR substrate binding domain EEA47_09510 PF01206 Sulfurtransferase TusA EEA47_09520 PF01169 Uncharacterized protein family UPF0016 EEA47_09525 PF02091 Glycyl-tRNA synthetase alpha subunit EEA47_09530 PF05746 DALR anticodon binding domain EEA47_09530 PF02092 Glycyl-tRNA synthetase beta subunit EEA47_09535 PF00128 Alpha amylase, catalytic domain EEA47_09540 PF00155 Aminotransferase class I and II EEA47_09545 PF00011 Hsp20/alpha crystallin family EEA47_09565 PF18053 DNA gyrase B subunit insert domain EEA47_09565 PF00204 DNA gyrase B EEA47_09565 PF00986 DNA gyrase B subunit, carboxyl terminus EEA47_09565 PF01751 Toprim domain EEA47_09565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_09570 PF02463 RecF/RecN/SMC N terminal domain EEA47_09575 PF00712 DNA polymerase III beta subunit, N-terminal domain EEA47_09575 PF02767 DNA polymerase III beta subunit, central domain EEA47_09575 PF02768 DNA polymerase III beta subunit, C-terminal domain EEA47_09580 PF00308 Bacterial dnaA protein EEA47_09580 PF08299 Bacterial dnaA protein helix-turn-helix EEA47_09580 PF11638 DnaA N-terminal domain EEA47_09590 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_09595 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_09600 PF00005 ABC transporter EEA47_09605 PF00468 Ribosomal protein L34 EEA47_09610 PF00825 Ribonuclease P EEA47_09615 PF01809 Putative membrane protein insertion efficiency factor EEA47_09620 PF14849 YidC periplasmic domain EEA47_09620 PF02096 60Kd inner membrane protein EEA47_09625 PF10396 GTP-binding protein TrmE N-terminus EEA47_09625 PF12631 MnmE helical domain EEA47_09625 PF01926 50S ribosome-binding GTPase EEA47_09630 PF00258 Flavodoxin EEA47_09635 PF13932 GidA associated domain EEA47_09635 PF01134 Glucose inhibited division protein A EEA47_09640 PF02527 rRNA small subunit methyltransferase G EEA47_09645 PF13614 AAA domain EEA47_09650 PF17762 HTH domain found in ParB protein EEA47_09650 PF02195 ParB-like nuclease domain EEA47_09655 PF03899 ATP synthase I chain EEA47_09660 PF00119 ATP synthase A chain EEA47_09665 PF00137 ATP synthase subunit C EEA47_09670 PF00430 ATP synthase B/B' CF(0) EEA47_09675 PF00213 ATP synthase delta (OSCP) subunit EEA47_09680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEA47_09680 PF00306 ATP synthase alpha/beta chain, C terminal domain EEA47_09680 PF02874 ATP synthase alpha/beta family, beta-barrel domain EEA47_09685 PF00231 ATP synthase EEA47_09690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEA47_09690 PF02874 ATP synthase alpha/beta family, beta-barrel domain EEA47_09695 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain EEA47_09695 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EEA47_09700 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_09700 PF12804 MobA-like NTP transferase domain EEA47_09705 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_09710 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_09715 PF07690 Major Facilitator Superfamily EEA47_09720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_09720 PF03466 LysR substrate binding domain EEA47_09725 PF00291 Pyridoxal-phosphate dependent enzyme EEA47_09725 PF00585 C-terminal regulatory domain of Threonine dehydratase EEA47_09730 PF00920 Dehydratase family EEA47_09735 PF01063 Amino-transferase class IV EEA47_09745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EEA47_09745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEA47_09745 PF00205 Thiamine pyrophosphate enzyme, central domain EEA47_09750 PF01078 Magnesium chelatase, subunit ChlI EEA47_09750 PF13335 Magnesium chelatase, subunit ChlI C-terminal EEA47_09760 PF01553 Acyltransferase EEA47_09765 PF01323 DSBA-like thioredoxin domain EEA47_09770 PF01636 Phosphotransferase enzyme family EEA47_09775 PF13746 4Fe-4S dicluster domain EEA47_09775 PF12801 4Fe-4S binding domain EEA47_09775 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EEA47_09780 PF06288 Protein of unknown function (DUF1040) EEA47_09790 PF07070 SpoOM protein EEA47_09795 PF03006 Haemolysin-III related EEA47_09805 PF02386 Cation transport protein EEA47_09810 PF02080 TrkA-C domain EEA47_09810 PF02254 TrkA-N domain EEA47_09815 PF01189 16S rRNA methyltransferase RsmB/F EEA47_09815 PF01029 NusB family EEA47_09820 PF02911 Formyl transferase, C-terminal domain EEA47_09820 PF00551 Formyl transferase EEA47_09825 PF01327 Polypeptide deformylase EEA47_09835 PF02481 DNA recombination-mediator protein A EEA47_09835 PF17782 DprA winged helix domain EEA47_09840 PF04361 Protein of unknown function (DUF494) EEA47_09845 PF01396 Topoisomerase DNA binding C4 zinc finger EEA47_09850 PF02222 ATP-grasp domain EEA47_09850 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EEA47_09855 PF00731 AIR carboxylase EEA47_09860 PF01300 Telomere recombination EEA47_09865 PF01218 Coproporphyrinogen III oxidase EEA47_09870 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EEA47_09870 PF01488 Shikimate / quinate 5-dehydrogenase EEA47_09870 PF08501 Shikimate dehydrogenase substrate binding domain EEA47_09875 PF07369 Protein of unknown function (DUF1488) EEA47_09880 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_09915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_09915 PF03466 LysR substrate binding domain EEA47_09920 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EEA47_09920 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EEA47_09925 PF04380 Membrane fusogenic activity EEA47_09930 PF00873 AcrB/AcrD/AcrF family EEA47_09935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_09940 PF00440 Bacterial regulatory proteins, tetR family EEA47_09940 PF16295 Tetracyclin repressor-like, C-terminal domain EEA47_09945 PF13361 UvrD-like helicase C-terminal domain EEA47_09945 PF00580 UvrD/REP helicase N-terminal domain EEA47_09950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EEA47_09980 PF13419 Haloacid dehalogenase-like hydrolase EEA47_09990 PF00005 ABC transporter EEA47_09990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_09995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_10000 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_10005 PF12911 N-terminal TM domain of oligopeptide transport permease C EEA47_10005 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_10040 PF00069 Protein kinase domain EEA47_10045 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EEA47_10045 PF00356 Bacterial regulatory proteins, lacI family EEA47_10050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_10050 PF03466 LysR substrate binding domain EEA47_10055 PF00893 Small Multidrug Resistance protein EEA47_10060 PF00893 Small Multidrug Resistance protein EEA47_10065 PF00920 Dehydratase family EEA47_10070 PF01202 Shikimate kinase EEA47_10075 PF02447 GntP family permease EEA47_10080 PF01081 KDPG and KHG aldolase EEA47_10100 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_10100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEA47_10105 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EEA47_10110 PF01432 Peptidase family M3 EEA47_10115 PF01037 Lrp/AsnC ligand binding domain EEA47_10120 PF00563 EAL domain EEA47_10120 PF08448 PAS fold EEA47_10120 PF00990 Diguanylate cyclase, GGDEF domain EEA47_10125 PF04445 Putative SAM-dependent methyltransferase EEA47_10135 PF00892 EamA-like transporter family EEA47_10140 PF00582 Universal stress protein family EEA47_10145 PF00210 Ferritin-like domain EEA47_10150 PF10625 Universal stress protein B (UspB) EEA47_10160 PF00158 Sigma-54 interaction domain EEA47_10160 PF02954 Bacterial regulatory protein, Fis family EEA47_10160 PF01590 GAF domain EEA47_10185 PF00781 Diacylglycerol kinase catalytic domain EEA47_10215 PF01594 AI-2E family transporter EEA47_10220 PF03707 Bacterial signalling protein N terminal repeat EEA47_10220 PF00990 Diguanylate cyclase, GGDEF domain EEA47_10220 PF00563 EAL domain EEA47_10230 PF02646 RmuC family EEA47_10235 PF01209 ubiE/COQ5 methyltransferase family EEA47_10240 PF02036 SCP-2 sterol transfer family EEA47_10245 PF03109 ABC1 family EEA47_10250 PF02416 mttA/Hcf106 family EEA47_10255 PF02416 mttA/Hcf106 family EEA47_10260 PF00902 Sec-independent protein translocase protein (TatC) EEA47_10275 PF01026 TatD related DNase EEA47_10285 PF00490 Delta-aminolevulinic acid dehydratase EEA47_10290 PF00583 Acetyltransferase (GNAT) family EEA47_10300 PF00476 DNA polymerase family A EEA47_10300 PF01367 5'-3' exonuclease, C-terminal SAM fold EEA47_10300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EEA47_10300 PF01612 3'-5' exonuclease EEA47_10305 PF01926 50S ribosome-binding GTPase EEA47_10310 PF00034 Cytochrome c EEA47_10325 PF04220 Der GTPase activator (YihI) EEA47_10330 PF10675 Protein of unknown function (DUF2489) EEA47_10335 PF06969 HemN C-terminal domain EEA47_10335 PF04055 Radical SAM superfamily EEA47_10340 PF00962 Adenosine/AMP deaminase EEA47_10345 PF00563 EAL domain EEA47_10345 PF03707 Bacterial signalling protein N terminal repeat EEA47_10345 PF00990 Diguanylate cyclase, GGDEF domain EEA47_10350 PF02954 Bacterial regulatory protein, Fis family EEA47_10350 PF00072 Response regulator receiver domain EEA47_10350 PF00158 Sigma-54 interaction domain EEA47_10355 PF00512 His Kinase A (phospho-acceptor) domain EEA47_10355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_10355 PF00989 PAS fold EEA47_10365 PF00120 Glutamine synthetase, catalytic domain EEA47_10365 PF03951 Glutamine synthetase, beta-Grasp domain EEA47_10370 PF03144 Elongation factor Tu domain 2 EEA47_10370 PF00009 Elongation factor Tu GTP binding domain EEA47_10370 PF00679 Elongation factor G C-terminus EEA47_10375 PF08299 Bacterial dnaA protein helix-turn-helix EEA47_10375 PF00308 Bacterial dnaA protein EEA47_10385 PF03631 Virulence factor BrkB EEA47_10390 PF02580 D-Tyr-tRNA(Tyr) deacylase EEA47_10395 PF09500 Putative thioesterase (yiiD_Cterm) EEA47_10395 PF00583 Acetyltransferase (GNAT) family EEA47_10405 PF01293 Phosphoenolpyruvate carboxykinase EEA47_10410 PF01430 Hsp33 protein EEA47_10415 PF01479 S4 domain EEA47_10420 PF11356 Type II secretion system protein C EEA47_10425 PF03958 Bacterial type II/III secretion system short domain EEA47_10425 PF00263 Bacterial type II and III secretion system protein EEA47_10430 PF00437 Type II/IV secretion system protein EEA47_10435 PF00482 Type II secretion system (T2SS), protein F EEA47_10440 PF07963 Prokaryotic N-terminal methylation motif EEA47_10440 PF08334 Type II secretion system (T2SS), protein G EEA47_10445 PF12019 Type II transport protein GspH EEA47_10450 PF07963 Prokaryotic N-terminal methylation motif EEA47_10450 PF02501 Type II secretion system (T2SS), protein I EEA47_10455 PF11612 Type II secretion system (T2SS), protein J EEA47_10455 PF07963 Prokaryotic N-terminal methylation motif EEA47_10460 PF03934 Type II secretion system (T2SS), protein K EEA47_10465 PF05134 Type II secretion system (T2SS), protein L EEA47_10465 PF12693 GspL periplasmic domain EEA47_10470 PF04612 Type II secretion system (T2SS), protein M EEA47_10475 PF01203 Type II secretion system (T2SS), protein N EEA47_10480 PF00459 Inositol monophosphatase family EEA47_10485 PF00293 NUDIX domain EEA47_10490 PF01106 NifU-like domain EEA47_10490 PF01521 Iron-sulphur cluster biosynthesis EEA47_10495 PF00156 Phosphoribosyl transferase domain EEA47_10500 PF00561 alpha/beta hydrolase fold EEA47_10510 PF09371 Tex-like protein N-terminal domain EEA47_10510 PF17674 HHH domain EEA47_10510 PF00575 S1 RNA binding domain EEA47_10510 PF16921 Tex protein YqgF-like domain EEA47_10520 PF01272 Transcription elongation factor, GreA/GreB, C-term EEA47_10520 PF03449 Transcription elongation factor, N-terminal EEA47_10530 PF00072 Response regulator receiver domain EEA47_10530 PF00486 Transcriptional regulatory protein, C terminal EEA47_10535 PF00672 HAMP domain EEA47_10535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_10535 PF00512 His Kinase A (phospho-acceptor) domain EEA47_10540 PF00860 Permease family EEA47_10545 PF00270 DEAD/DEAH box helicase EEA47_10545 PF17191 RecG wedge domain EEA47_10545 PF00271 Helicase conserved C-terminal domain EEA47_10550 PF12105 SpoU, rRNA methylase, C-terminal EEA47_10550 PF00588 SpoU rRNA Methylase family EEA47_10555 PF02824 TGS domain EEA47_10555 PF04607 Region found in RelA / SpoT proteins EEA47_10555 PF13291 ACT domain EEA47_10560 PF01192 RNA polymerase Rpb6 EEA47_10565 PF00625 Guanylate kinase EEA47_10585 PF02472 Biopolymer transport protein ExbD/TolR EEA47_10590 PF01618 MotA/TolQ/ExbB proton channel family EEA47_10605 PF00593 TonB dependent receptor EEA47_10605 PF07715 TonB-dependent Receptor Plug Domain EEA47_10615 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_10620 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_10620 PF12911 N-terminal TM domain of oligopeptide transport permease C EEA47_10625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_10630 PF00005 ABC transporter EEA47_10630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_10635 PF00005 ABC transporter EEA47_10635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_10645 PF08340 Domain of unknown function (DUF1732) EEA47_10645 PF03755 YicC-like family, N-terminal region EEA47_10655 PF01138 3' exoribonuclease family, domain 1 EEA47_10655 PF03725 3' exoribonuclease family, domain 2 EEA47_10660 PF00156 Phosphoribosyl transferase domain EEA47_10665 PF03279 Bacterial lipid A biosynthesis acyltransferase EEA47_10670 PF00440 Bacterial regulatory proteins, tetR family EEA47_10675 PF04127 DNA / pantothenate metabolism flavoprotein EEA47_10675 PF02441 Flavoprotein EEA47_10685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_10685 PF17200 Single Cache domain 2 EEA47_10685 PF00672 HAMP domain EEA47_10690 PF04002 RadC-like JAB domain EEA47_10695 PF00830 Ribosomal L28 family EEA47_10700 PF00471 Ribosomal protein L33 EEA47_10710 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EEA47_10710 PF06827 Zinc finger found in FPG and IleRS EEA47_10710 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EEA47_10720 PF05686 Glycosyl transferase family 90 EEA47_10725 PF01467 Cytidylyltransferase-like EEA47_10730 PF00535 Glycosyl transferase family 2 EEA47_10735 PF00535 Glycosyl transferase family 2 EEA47_10740 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EEA47_10745 PF01219 Prokaryotic diacylglycerol kinase EEA47_10755 PF16363 GDP-mannose 4,6 dehydratase EEA47_10760 PF00483 Nucleotidyl transferase EEA47_10770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EEA47_10780 PF07922 Glycosyltransferase family 52 EEA47_10785 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EEA47_10785 PF00534 Glycosyl transferases group 1 EEA47_10790 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EEA47_10795 PF03279 Bacterial lipid A biosynthesis acyltransferase EEA47_10800 PF01370 NAD dependent epimerase/dehydratase family EEA47_10805 PF06082 Exopolysaccharide biosynthesis protein YbjH EEA47_10815 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF EEA47_10840 PF02350 UDP-N-acetylglucosamine 2-epimerase EEA47_10845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EEA47_10845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EEA47_10845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EEA47_10850 PF02719 Polysaccharide biosynthesis protein EEA47_10855 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EEA47_10860 PF02350 UDP-N-acetylglucosamine 2-epimerase EEA47_10865 PF08666 SAF domain EEA47_10865 PF03102 NeuB family EEA47_10870 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_10870 PF14602 Hexapeptide repeat of succinyl-transferase EEA47_10870 PF12804 MobA-like NTP transferase domain EEA47_10875 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_10875 PF00483 Nucleotidyl transferase EEA47_10880 PF02348 Cytidylyltransferase EEA47_10885 PF01943 Polysaccharide biosynthesis protein EEA47_10900 PF14602 Hexapeptide repeat of succinyl-transferase EEA47_10900 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_10900 PF12464 Maltose acetyltransferase EEA47_10905 PF03808 Glycosyl transferase WecB/TagA/CpsF family EEA47_10910 PF00953 Glycosyl transferase family 4 EEA47_10915 PF10996 Beta-Casp domain EEA47_10915 PF00753 Metallo-beta-lactamase superfamily EEA47_10915 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EEA47_10920 PF02350 UDP-N-acetylglucosamine 2-epimerase EEA47_10925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EEA47_10925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EEA47_10925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EEA47_10950 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EEA47_10950 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EEA47_10965 PF02397 Bacterial sugar transferase EEA47_10975 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EEA47_10980 PF02719 Polysaccharide biosynthesis protein EEA47_10995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EEA47_10995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EEA47_10995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EEA47_11000 PF00121 Triosephosphate isomerase EEA47_11025 PF00455 DeoR C terminal sensor domain EEA47_11025 PF08220 DeoR-like helix-turn-helix domain EEA47_11030 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded EEA47_11035 PF06005 Cell division protein ZapB EEA47_11040 PF03737 Aldolase/RraA EEA47_11045 PF01040 UbiA prenyltransferase family EEA47_11050 PF07724 AAA domain (Cdc48 subfamily) EEA47_11050 PF00004 ATPase family associated with various cellular activities (AAA) EEA47_11055 PF00227 Proteasome subunit EEA47_11065 PF00356 Bacterial regulatory proteins, lacI family EEA47_11070 PF00270 DEAD/DEAH box helicase EEA47_11070 PF00271 Helicase conserved C-terminal domain EEA47_11070 PF17764 3′ DNA-binding domain (3′BD) EEA47_11070 PF18074 Primosomal protein N C-terminal domain EEA47_11070 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EEA47_11080 PF01197 Ribosomal protein L31 EEA47_11085 PF00338 Ribosomal protein S10p/S20e EEA47_11090 PF00297 Ribosomal protein L3 EEA47_11095 PF00573 Ribosomal protein L4/L1 family EEA47_11100 PF00276 Ribosomal protein L23 EEA47_11105 PF03947 Ribosomal Proteins L2, C-terminal domain EEA47_11105 PF00181 Ribosomal Proteins L2, RNA binding domain EEA47_11110 PF00203 Ribosomal protein S19 EEA47_11115 PF00237 Ribosomal protein L22p/L17e EEA47_11120 PF00189 Ribosomal protein S3, C-terminal domain EEA47_11120 PF07650 KH domain EEA47_11125 PF00252 Ribosomal protein L16p/L10e EEA47_11130 PF00831 Ribosomal L29 protein EEA47_11135 PF00366 Ribosomal protein S17 EEA47_11140 PF00238 Ribosomal protein L14p/L23e EEA47_11145 PF00467 KOW motif EEA47_11145 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EEA47_11150 PF00673 ribosomal L5P family C-terminus EEA47_11150 PF00281 Ribosomal protein L5 EEA47_11155 PF00253 Ribosomal protein S14p/S29e EEA47_11160 PF00410 Ribosomal protein S8 EEA47_11165 PF00347 Ribosomal protein L6 EEA47_11170 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EEA47_11175 PF03719 Ribosomal protein S5, C-terminal domain EEA47_11175 PF00333 Ribosomal protein S5, N-terminal domain EEA47_11180 PF00327 Ribosomal protein L30p/L7e EEA47_11185 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EEA47_11190 PF00344 SecY translocase EEA47_11195 PF00444 Ribosomal protein L36 EEA47_11200 PF00416 Ribosomal protein S13/S18 EEA47_11205 PF00411 Ribosomal protein S11 EEA47_11210 PF00163 Ribosomal protein S4/S9 N-terminal domain EEA47_11210 PF01479 S4 domain EEA47_11215 PF01000 RNA polymerase Rpb3/RpoA insert domain EEA47_11215 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EEA47_11215 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EEA47_11220 PF01196 Ribosomal protein L17 EEA47_11230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEA47_11230 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EEA47_11240 PF13673 Acetyltransferase (GNAT) domain EEA47_11245 PF03880 DbpA RNA binding domain EEA47_11245 PF00270 DEAD/DEAH box helicase EEA47_11245 PF00271 Helicase conserved C-terminal domain EEA47_11255 PF02872 5'-nucleotidase, C-terminal domain EEA47_11255 PF00149 Calcineurin-like phosphoesterase EEA47_11260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EEA47_11260 PF14824 Sirohaem biosynthesis protein central EEA47_11260 PF10414 Sirohaem synthase dimerisation region EEA47_11265 PF01507 Phosphoadenosine phosphosulfate reductase family EEA47_11270 PF00009 Elongation factor Tu GTP binding domain EEA47_11275 PF02080 TrkA-C domain EEA47_11275 PF03600 Citrate transporter EEA47_11300 PF00005 ABC transporter EEA47_11310 PF10795 Protein of unknown function (DUF2607) EEA47_11315 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) EEA47_11320 PF06526 Protein of unknown function (DUF1107) EEA47_11325 PF01625 Peptide methionine sulfoxide reductase EEA47_11330 PF17243 POTRA domain TamA domain 1 EEA47_11330 PF01103 Surface antigen EEA47_11330 PF07244 Surface antigen variable number repeat EEA47_11335 PF04357 TamB, inner membrane protein subunit of TAM complex EEA47_11340 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like EEA47_11350 PF00719 Inorganic pyrophosphatase EEA47_11355 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EEA47_11365 PF08245 Mur ligase middle domain EEA47_11365 PF02875 Mur ligase family, glutamate ligase domain EEA47_11365 PF01225 Mur ligase family, catalytic domain EEA47_11370 PF02441 Flavoprotein EEA47_11380 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_11385 PF00005 ABC transporter EEA47_11390 PF03466 LysR substrate binding domain EEA47_11390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_11395 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EEA47_11415 PF16868 NMT1-like family EEA47_11425 PF02863 Arginine repressor, C-terminal domain EEA47_11425 PF01316 Arginine repressor, DNA binding domain EEA47_11430 PF00056 lactate/malate dehydrogenase, NAD binding domain EEA47_11430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EEA47_11440 PF00348 Polyprenyl synthetase EEA47_11445 PF00829 Ribosomal prokaryotic L21 protein EEA47_11450 PF01016 Ribosomal L27 protein EEA47_11455 PF01018 GTP1/OBG EEA47_11455 PF01926 50S ribosome-binding GTPase EEA47_11460 PF06738 Putative threonine/serine exporter EEA47_11465 PF12821 Threonine/Serine exporter, ThrE EEA47_11470 PF00186 Dihydrofolate reductase EEA47_11475 PF00149 Calcineurin-like phosphoesterase EEA47_11480 PF04379 ApaG domain EEA47_11485 PF00398 Ribosomal RNA adenine dimethylase EEA47_11490 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EEA47_11495 PF09312 SurA N-terminal domain EEA47_11500 PF04453 LPS transport system D EEA47_11500 PF03968 OstA-like protein EEA47_11505 PF00226 DnaJ domain EEA47_11505 PF05099 Tellurite resistance protein TerB EEA47_11515 PF00694 Aconitase C-terminal domain EEA47_11520 PF00330 Aconitase family (aconitate hydratase) EEA47_11525 PF00180 Isocitrate/isopropylmalate dehydrogenase EEA47_11530 PF08502 LeuA allosteric (dimerisation) domain EEA47_11530 PF00682 HMGL-like EEA47_11545 PF01569 PAP2 superfamily EEA47_11555 PF03466 LysR substrate binding domain EEA47_11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_11560 PF00501 AMP-binding enzyme EEA47_11565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEA47_11565 PF00205 Thiamine pyrophosphate enzyme, central domain EEA47_11565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EEA47_11570 PF10369 Small subunit of acetolactate synthase EEA47_11575 PF00990 Diguanylate cyclase, GGDEF domain EEA47_11585 PF00224 Pyruvate kinase, barrel domain EEA47_11585 PF02887 Pyruvate kinase, alpha/beta domain EEA47_11590 PF00455 DeoR C terminal sensor domain EEA47_11590 PF08220 DeoR-like helix-turn-helix domain EEA47_11595 PF01380 SIS domain EEA47_11600 PF00465 Iron-containing alcohol dehydrogenase EEA47_11605 PF02733 Dak1 domain EEA47_11610 PF02734 DAK2 domain EEA47_11615 PF05524 PEP-utilising enzyme, N-terminal EEA47_11615 PF00391 PEP-utilising enzyme, mobile domain EEA47_11615 PF02896 PEP-utilising enzyme, TIM barrel domain EEA47_11620 PF02954 Bacterial regulatory protein, Fis family EEA47_11620 PF00989 PAS fold EEA47_11620 PF00158 Sigma-54 interaction domain EEA47_11625 PF05068 Mannitol repressor EEA47_11630 PF01232 Mannitol dehydrogenase Rossmann domain EEA47_11630 PF08125 Mannitol dehydrogenase C-terminal domain EEA47_11635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEA47_11635 PF02378 Phosphotransferase system, EIIC EEA47_11635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EEA47_11655 PF03180 NLPA lipoprotein EEA47_11660 PF00589 Phage integrase family EEA47_11665 PF00700 Bacterial flagellin C-terminal helical region EEA47_11665 PF07196 Flagellin hook IN motif EEA47_11665 PF00669 Bacterial flagellin N-terminal helical region EEA47_11695 PF02384 N-6 DNA Methylase EEA47_11695 PF12161 HsdM N-terminal domain EEA47_11705 PF00140 Sigma-70 factor, region 1.2 EEA47_11705 PF04546 Sigma-70, non-essential region EEA47_11705 PF04539 Sigma-70 region 3 EEA47_11705 PF04545 Sigma-70, region 4 EEA47_11705 PF03979 Sigma-70 factor, region 1.1 EEA47_11705 PF04542 Sigma-70 region 2 EEA47_11710 PF10410 DnaB-helicase binding domain of primase EEA47_11710 PF08278 DNA primase DnaG DnaB-binding EEA47_11710 PF08275 DNA primase catalytic core, N-terminal domain EEA47_11710 PF01807 CHC2 zinc finger EEA47_11715 PF09424 Yqey-like protein EEA47_11720 PF01165 Ribosomal protein S21 EEA47_11725 PF00814 Glycoprotease family EEA47_11730 PF00561 alpha/beta hydrolase fold EEA47_11735 PF02660 Glycerol-3-phosphate acyltransferase EEA47_11740 PF02152 Dihydroneopterin aldolase EEA47_11745 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EEA47_11750 PF02673 Bacitracin resistance protein BacA EEA47_11755 PF01966 HD domain EEA47_11755 PF01743 Poly A polymerase head domain EEA47_11755 PF12627 Probable RNA and SrmB- binding site of polymerase A EEA47_11760 PF01471 Putative peptidoglycan binding domain EEA47_11760 PF13401 AAA domain EEA47_11775 PF08239 Bacterial SH3 domain EEA47_11780 PF01384 Phosphate transporter family EEA47_11785 PF01865 Protein of unknown function DUF47 EEA47_11790 PF01928 CYTH domain EEA47_11800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_11800 PF02743 Cache domain EEA47_11800 PF00672 HAMP domain EEA47_11805 PF08335 GlnD PII-uridylyltransferase EEA47_11805 PF03710 Glutamate-ammonia ligase adenylyltransferase EEA47_11810 PF00294 pfkB family carbohydrate kinase EEA47_11810 PF01467 Cytidylyltransferase-like EEA47_11815 PF02321 Outer membrane efflux protein EEA47_11820 PF00293 NUDIX domain EEA47_11825 PF06853 Protein of unknown function (DUF1249) EEA47_11830 PF00149 Calcineurin-like phosphoesterase EEA47_11835 PF05728 Uncharacterised protein family (UPF0227) EEA47_11840 PF00204 DNA gyrase B EEA47_11840 PF00986 DNA gyrase B subunit, carboxyl terminus EEA47_11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_11840 PF01751 Toprim domain EEA47_11845 PF03989 DNA gyrase C-terminal domain, beta-propeller EEA47_11845 PF00521 DNA gyrase/topoisomerase IV, subunit A EEA47_11850 PF13180 PDZ domain EEA47_11855 PF00595 PDZ domain EEA47_11860 PF06295 Protein of unknown function (DUF1043) EEA47_11870 PF03969 AFG1-like ATPase EEA47_11880 PF00572 Ribosomal protein L13 EEA47_11885 PF00380 Ribosomal protein S9/S16 EEA47_11890 PF00355 Rieske [2Fe-2S] domain EEA47_11890 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EEA47_11895 PF00032 Cytochrome b(C-terminal)/b6/petD EEA47_11895 PF00033 Cytochrome b/b6/petB EEA47_11900 PF02167 Cytochrome C1 family EEA47_11905 PF00043 Glutathione S-transferase, C-terminal domain EEA47_11905 PF02798 Glutathione S-transferase, N-terminal domain EEA47_11910 PF04386 Stringent starvation protein B EEA47_11915 PF04972 BON domain EEA47_11920 PF13580 SIS domain EEA47_11925 PF02021 Uncharacterised protein family UPF0102 EEA47_11930 PF04348 LppC putative lipoprotein EEA47_11935 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EEA47_11950 PF01795 MraW methylase family EEA47_11955 PF04999 Cell division protein FtsL EEA47_11960 PF03717 Penicillin-binding Protein dimerisation domain EEA47_11960 PF00905 Penicillin binding protein transpeptidase domain EEA47_11965 PF08245 Mur ligase middle domain EEA47_11965 PF01225 Mur ligase family, catalytic domain EEA47_11965 PF02875 Mur ligase family, glutamate ligase domain EEA47_11970 PF01225 Mur ligase family, catalytic domain EEA47_11970 PF02875 Mur ligase family, glutamate ligase domain EEA47_11970 PF08245 Mur ligase middle domain EEA47_11975 PF00953 Glycosyl transferase family 4 EEA47_11975 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EEA47_11980 PF02875 Mur ligase family, glutamate ligase domain EEA47_11980 PF08245 Mur ligase middle domain EEA47_11985 PF01098 Cell cycle protein EEA47_11990 PF04101 Glycosyltransferase family 28 C-terminal domain EEA47_11990 PF03033 Glycosyltransferase family 28 N-terminal domain EEA47_11995 PF01225 Mur ligase family, catalytic domain EEA47_11995 PF02875 Mur ligase family, glutamate ligase domain EEA47_11995 PF08245 Mur ligase middle domain EEA47_12000 PF08478 POTRA domain, FtsQ-type EEA47_12000 PF03799 Cell division protein FtsQ EEA47_12005 PF02491 SHS2 domain inserted in FTSA EEA47_12010 PF12327 FtsZ family, C-terminal domain EEA47_12010 PF00091 Tubulin/FtsZ family, GTPase domain EEA47_12015 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EEA47_12025 PF02810 SEC-C motif EEA47_12025 PF07517 SecA DEAD-like domain EEA47_12025 PF01043 SecA preprotein cross-linking domain EEA47_12025 PF07516 SecA Wing and Scaffold domain EEA47_12030 PF00293 NUDIX domain EEA47_12035 PF05173 Dihydrodipicolinate reductase, C-terminus EEA47_12035 PF01113 Dihydrodipicolinate reductase, N-terminus EEA47_12040 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EEA47_12040 PF00117 Glutamine amidotransferase class-I EEA47_12045 PF02142 MGS-like domain EEA47_12045 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EEA47_12045 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EEA47_12060 PF01925 Sulfite exporter TauE/SafE EEA47_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_12065 PF03466 LysR substrate binding domain EEA47_12070 PF03458 UPF0126 domain EEA47_12075 PF01497 Periplasmic binding protein EEA47_12080 PF17113 Regulatory signalling modulator protein AmpE EEA47_12080 PF03186 CobD/Cbib protein EEA47_12085 PF01048 Phosphorylase superfamily EEA47_12095 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EEA47_12095 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_12100 PF01645 Conserved region in glutamate synthase EEA47_12100 PF01493 GXGXG motif EEA47_12100 PF00310 Glutamine amidotransferases class-II EEA47_12100 PF04898 Glutamate synthase central domain EEA47_12105 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_12105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EEA47_12110 PF00310 Glutamine amidotransferases class-II EEA47_12110 PF04898 Glutamate synthase central domain EEA47_12110 PF01645 Conserved region in glutamate synthase EEA47_12110 PF01493 GXGXG motif EEA47_12115 PF04055 Radical SAM superfamily EEA47_12115 PF16199 Radical_SAM C-terminal domain EEA47_12120 PF00360 Phytochrome region EEA47_12120 PF00563 EAL domain EEA47_12120 PF01590 GAF domain EEA47_12120 PF00990 Diguanylate cyclase, GGDEF domain EEA47_12125 PF00072 Response regulator receiver domain EEA47_12125 PF00989 PAS fold EEA47_12125 PF01627 Hpt domain EEA47_12125 PF18415 Histidine kinase receptor ArcB trans-membrane domain EEA47_12125 PF00512 His Kinase A (phospho-acceptor) domain EEA47_12125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_12135 PF00072 Response regulator receiver domain EEA47_12135 PF00486 Transcriptional regulatory protein, C terminal EEA47_12150 PF03737 Aldolase/RraA EEA47_12165 PF01842 ACT domain EEA47_12165 PF13840 ACT domain EEA47_12165 PF00742 Homoserine dehydrogenase EEA47_12165 PF03447 Homoserine dehydrogenase, NAD binding domain EEA47_12165 PF00696 Amino acid kinase family EEA47_12170 PF08544 GHMP kinases C terminal EEA47_12170 PF00288 GHMP kinases N terminal domain EEA47_12175 PF00291 Pyridoxal-phosphate dependent enzyme EEA47_12175 PF14821 Threonine synthase N terminus EEA47_12185 PF01228 Glycine radical EEA47_12190 PF01261 Xylose isomerase-like TIM barrel EEA47_12200 PF03167 Uracil DNA glycosylase superfamily EEA47_12215 PF01235 Sodium:alanine symporter family EEA47_12220 PF03883 Peroxide stress protein YaaA EEA47_12225 PF00271 Helicase conserved C-terminal domain EEA47_12225 PF00270 DEAD/DEAH box helicase EEA47_12230 PF05175 Methyltransferase small domain EEA47_12235 PF05525 Branched-chain amino acid transport protein EEA47_12240 PF00258 Flavodoxin EEA47_12245 PF02899 Phage integrase, N-terminal SAM-like domain EEA47_12245 PF00589 Phage integrase family EEA47_12250 PF10411 Disulfide bond isomerase protein N-terminus EEA47_12250 PF13098 Thioredoxin-like domain EEA47_12255 PF01368 DHH family EEA47_12255 PF02272 DHHA1 domain EEA47_12255 PF17768 RecJ OB domain EEA47_12265 PF00152 tRNA synthetases class II (D, K and N) EEA47_12265 PF01336 OB-fold nucleic acid binding domain EEA47_12270 PF00158 Sigma-54 interaction domain EEA47_12270 PF02954 Bacterial regulatory protein, Fis family EEA47_12270 PF00072 Response regulator receiver domain EEA47_12280 PF00248 Aldo/keto reductase family EEA47_12290 PF02976 DNA mismatch repair enzyme MutH EEA47_12295 PF00293 NUDIX domain EEA47_12300 PF01590 GAF domain EEA47_12300 PF05524 PEP-utilising enzyme, N-terminal EEA47_12300 PF00391 PEP-utilising enzyme, mobile domain EEA47_12300 PF02896 PEP-utilising enzyme, TIM barrel domain EEA47_12305 PF01925 Sulfite exporter TauE/SafE EEA47_12310 PF01790 Prolipoprotein diacylglyceryl transferase EEA47_12315 PF00303 Thymidylate synthase EEA47_12325 PF02690 Na+/Pi-cotransporter EEA47_12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_12330 PF03466 LysR substrate binding domain EEA47_12335 PF01022 Bacterial regulatory protein, arsR family EEA47_12340 PF01797 Transposase IS200 like EEA47_12345 PF01649 Ribosomal protein S20 EEA47_12350 PF03023 Lipid II flippase MurJ EEA47_12355 PF06574 FAD synthetase EEA47_12355 PF01687 Riboflavin kinase EEA47_12360 PF08264 Anticodon-binding domain of tRNA EEA47_12360 PF00133 tRNA synthetases class I (I, L, M and V) EEA47_12360 PF06827 Zinc finger found in FPG and IleRS EEA47_12365 PF01252 Signal peptidase (SPase) II EEA47_12370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEA47_12375 PF02401 LytB protein EEA47_12385 PF04397 LytTr DNA-binding domain EEA47_12385 PF00072 Response regulator receiver domain EEA47_12390 PF07694 5TMR of 5TMR-LYT EEA47_12390 PF06580 Histidine kinase EEA47_12395 PF02554 Carbon starvation protein CstA EEA47_12410 PF01380 SIS domain EEA47_12415 PF03702 Anhydro-N-acetylmuramic acid kinase EEA47_12420 PF00933 Glycosyl hydrolase family 3 N terminal domain EEA47_12425 PF00793 DAHP synthetase I family EEA47_12430 PF01817 Chorismate mutase type II EEA47_12430 PF02153 Prephenate dehydrogenase EEA47_12435 PF04225 Opacity-associated protein A LysM-like domain EEA47_12435 PF01551 Peptidase family M23 EEA47_12440 PF07238 PilZ domain EEA47_12445 PF00005 ABC transporter EEA47_12445 PF12848 ABC transporter EEA47_12450 PF01464 Transglycosylase SLT domain EEA47_12450 PF14718 Soluble lytic murein transglycosylase L domain EEA47_12455 PF01371 Trp repressor protein EEA47_12460 PF01931 Protein of unknown function DUF84 EEA47_12465 PF01817 Chorismate mutase type II EEA47_12465 PF00800 Prephenate dehydratase EEA47_12470 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EEA47_12475 PF01464 Transglycosylase SLT domain EEA47_12475 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_12480 PF13525 Outer membrane lipoprotein EEA47_12485 PF00849 RNA pseudouridylate synthase EEA47_12485 PF01479 S4 domain EEA47_12490 PF02578 Multi-copper polyphenol oxidoreductase laccase EEA47_12495 PF00004 ATPase family associated with various cellular activities (AAA) EEA47_12495 PF07724 AAA domain (Cdc48 subfamily) EEA47_12495 PF17871 AAA lid domain EEA47_12495 PF02861 Clp amino terminal domain, pathogenicity island component EEA47_12495 PF10431 C-terminal, D2-small domain, of ClpB protein EEA47_12545 PF03411 Penicillin-insensitive murein endopeptidase EEA47_12560 PF00037 4Fe-4S binding domain EEA47_12565 PF16325 Peptidase family U32 C-terminal domain EEA47_12565 PF01136 Peptidase family U32 EEA47_12570 PF04381 Putative exonuclease, RdgC EEA47_12580 PF00486 Transcriptional regulatory protein, C terminal EEA47_12580 PF00072 Response regulator receiver domain EEA47_12585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_12585 PF00512 His Kinase A (phospho-acceptor) domain EEA47_12585 PF00989 PAS fold EEA47_12585 PF11808 Phosphate regulon sensor protein PhoR EEA47_12590 PF12849 PBP superfamily domain EEA47_12595 PF02541 Ppx/GppA phosphatase family EEA47_12600 PF13089 Polyphosphate kinase N-terminal domain EEA47_12600 PF02503 Polyphosphate kinase middle domain EEA47_12600 PF13090 Polyphosphate kinase C-terminal domain 2 EEA47_12600 PF17941 Polyphosphate kinase C-terminal domain 1 EEA47_12605 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_12610 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_12615 PF00005 ABC transporter EEA47_12620 PF01895 PhoU domain EEA47_12625 PF03976 Polyphosphate kinase 2 (PPK2) EEA47_12630 PF03932 CutC family EEA47_12635 PF10417 C-terminal domain of 1-Cys peroxiredoxin EEA47_12635 PF00578 AhpC/TSA family EEA47_12640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_12640 PF03466 LysR substrate binding domain EEA47_12645 PF01274 Malate synthase EEA47_12650 PF00463 Isocitrate lyase family EEA47_12655 PF00571 CBS domain EEA47_12665 PF02547 Queuosine biosynthesis protein EEA47_12670 PF01702 Queuine tRNA-ribosyltransferase EEA47_12675 PF02699 Preprotein translocase subunit EEA47_12680 PF02355 Protein export membrane protein EEA47_12680 PF13721 SecD export protein N-terminal TM region EEA47_12680 PF07549 SecD/SecF GG Motif EEA47_12685 PF07549 SecD/SecF GG Motif EEA47_12685 PF02355 Protein export membrane protein EEA47_12700 PF00459 Inositol monophosphatase family EEA47_12705 PF00588 SpoU rRNA Methylase family EEA47_12710 PF02082 Transcriptional regulator EEA47_12715 PF00266 Aminotransferase class-V EEA47_12720 PF01592 NifU-like N terminal domain EEA47_12725 PF01521 Iron-sulphur cluster biosynthesis EEA47_12730 PF07743 HSCB C-terminal oligomerisation domain EEA47_12730 PF00226 DnaJ domain EEA47_12735 PF00012 Hsp70 protein EEA47_12740 PF00111 2Fe-2S iron-sulfur cluster binding domain EEA47_12745 PF04384 Iron-sulphur cluster assembly EEA47_12750 PF12404 Peptidase EEA47_12750 PF00883 Cytosol aminopeptidase family, catalytic domain EEA47_12755 PF00334 Nucleoside diphosphate kinase EEA47_12760 PF04055 Radical SAM superfamily EEA47_12765 PF13464 Domain of unknown function (DUF4115) EEA47_12770 PF04551 GcpE protein EEA47_12775 PF03129 Anticodon binding domain EEA47_12775 PF13393 Histidyl-tRNA synthetase EEA47_12780 PF09976 Tetratricopeptide repeat-like domain EEA47_12785 PF13360 PQQ-like domain EEA47_12790 PF01926 50S ribosome-binding GTPase EEA47_12790 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EEA47_12805 PF02601 Exonuclease VII, large subunit EEA47_12805 PF13742 OB-fold nucleic acid binding domain EEA47_12810 PF00571 CBS domain EEA47_12810 PF00478 IMP dehydrogenase / GMP reductase domain EEA47_12815 PF00117 Glutamine amidotransferase class-I EEA47_12815 PF00958 GMP synthase C terminal domain EEA47_12815 PF02540 NAD synthase EEA47_12820 PF13356 Arm DNA-binding domain EEA47_12820 PF00589 Phage integrase family EEA47_12860 PF03432 Relaxase/Mobilisation nuclease domain EEA47_12860 PF18821 Large polyvalent protein-associated domain 7 EEA47_12890 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EEA47_12930 PF06483 Chitinase C EEA47_12930 PF00704 Glycosyl hydrolases family 18 EEA47_12935 PF01184 GPR1/FUN34/yaaH family EEA47_12940 PF01235 Sodium:alanine symporter family EEA47_12945 PF01266 FAD dependent oxidoreductase EEA47_12955 PF01053 Cys/Met metabolism PLP-dependent enzyme EEA47_12960 PF00202 Aminotransferase class-III EEA47_12980 PF00795 Carbon-nitrogen hydrolase EEA47_12980 PF00583 Acetyltransferase (GNAT) family EEA47_12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_12985 PF03466 LysR substrate binding domain EEA47_13010 PF01668 SmpB protein EEA47_13015 PF03364 Polyketide cyclase / dehydrase and lipid transport EEA47_13020 PF03658 RnfH family Ubiquitin EEA47_13025 PF04355 SmpA / OmlA family EEA47_13035 PF02463 RecF/RecN/SMC N terminal domain EEA47_13045 PF01513 ATP-NAD kinase EEA47_13050 PF01025 GrpE EEA47_13055 PF00375 Sodium:dicarboxylate symporter family EEA47_13060 PF00012 Hsp70 protein EEA47_13065 PF01556 DnaJ C terminal domain EEA47_13065 PF00684 DnaJ central domain EEA47_13065 PF00226 DnaJ domain EEA47_13070 PF07963 Prokaryotic N-terminal methylation motif EEA47_13070 PF00114 Pilin (bacterial filament) EEA47_13075 PF07963 Prokaryotic N-terminal methylation motif EEA47_13075 PF00114 Pilin (bacterial filament) EEA47_13095 PF03806 AbgT putative transporter family EEA47_13100 PF14437 MafB19-like deaminase EEA47_13110 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_13110 PF01464 Transglycosylase SLT domain EEA47_13115 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EEA47_13115 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EEA47_13115 PF02769 AIR synthase related protein, C-terminal domain EEA47_13130 PF07715 TonB-dependent Receptor Plug Domain EEA47_13130 PF00593 TonB dependent receptor EEA47_13145 PF07687 Peptidase dimerisation domain EEA47_13145 PF01546 Peptidase family M20/M25/M40 EEA47_13150 PF00860 Permease family EEA47_13155 PF00156 Phosphoribosyl transferase domain EEA47_13160 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) EEA47_13165 PF07417 Sigma factor-binding transcriptional regulator Crl EEA47_13170 PF00696 Amino acid kinase family EEA47_13170 PF01472 PUA domain EEA47_13175 PF00171 Aldehyde dehydrogenase family EEA47_13180 PF03477 ATP cone domain EEA47_13185 PF01872 RibD C-terminal domain EEA47_13185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EEA47_13190 PF00677 Lumazine binding domain EEA47_13195 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EEA47_13195 PF00925 GTP cyclohydrolase II EEA47_13200 PF00885 6,7-dimethyl-8-ribityllumazine synthase EEA47_13205 PF01029 NusB family EEA47_13210 PF02769 AIR synthase related protein, C-terminal domain EEA47_13210 PF00586 AIR synthase related protein, N-terminal domain EEA47_13215 PF04608 Phosphatidylglycerophosphatase A EEA47_13220 PF02780 Transketolase, C-terminal domain EEA47_13220 PF02779 Transketolase, pyrimidine binding domain EEA47_13220 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EEA47_13225 PF00348 Polyprenyl synthetase EEA47_13230 PF02609 Exonuclease VII small subunit EEA47_13235 PF01618 MotA/TolQ/ExbB proton channel family EEA47_13240 PF13677 Membrane MotB of proton-channel complex MotA/MotB EEA47_13240 PF00691 OmpA family EEA47_13245 PF02926 THUMP domain EEA47_13245 PF02568 Thiamine biosynthesis protein (ThiI) EEA47_13250 PF03466 LysR substrate binding domain EEA47_13250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_13260 PF04241 Protein of unknown function (DUF423) EEA47_13265 PF01728 FtsJ-like methyltransferase EEA47_13265 PF18125 RlmM ferredoxin-like domain EEA47_13270 PF01367 5'-3' exonuclease, C-terminal SAM fold EEA47_13270 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EEA47_13275 PF03641 Possible lysine decarboxylase EEA47_13275 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases EEA47_13275 PF11892 Domain of unknown function (DUF3412) EEA47_13280 PF00990 Diguanylate cyclase, GGDEF domain EEA47_13290 PF14489 QueF-like protein EEA47_13290 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EEA47_13295 PF07348 Syd protein (SUKH-2) EEA47_13300 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) EEA47_13305 PF03180 NLPA lipoprotein EEA47_13310 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_13315 PF00005 ABC transporter EEA47_13315 PF09383 NIL domain EEA47_13330 PF00356 Bacterial regulatory proteins, lacI family EEA47_13335 PF00367 phosphotransferase system, EIIB EEA47_13335 PF02378 Phosphotransferase system, EIIC EEA47_13340 PF00128 Alpha amylase, catalytic domain EEA47_13340 PF16657 Maltogenic Amylase, C-terminal domain EEA47_13355 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EEA47_13355 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EEA47_13360 PF00464 Serine hydroxymethyltransferase EEA47_13365 PF04055 Radical SAM superfamily EEA47_13365 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EEA47_13370 PF03099 Biotin/lipoate A/B protein ligase family EEA47_13375 PF04359 Protein of unknown function (DUF493) EEA47_13380 PF07943 Penicillin-binding protein 5, C-terminal domain EEA47_13380 PF00768 D-alanyl-D-alanine carboxypeptidase EEA47_13385 PF03330 Lytic transglycolase EEA47_13385 PF05036 Sporulation related domain EEA47_13390 PF01098 Cell cycle protein EEA47_13395 PF03717 Penicillin-binding Protein dimerisation domain EEA47_13395 PF00905 Penicillin binding protein transpeptidase domain EEA47_13400 PF02590 Predicted SPOUT methyltransferase EEA47_13410 PF06144 DNA polymerase III, delta subunit EEA47_13410 PF14840 Processivity clamp loader gamma complex DNA pol III C-term EEA47_13415 PF04390 Lipopolysaccharide-assembly EEA47_13420 PF13603 Leucyl-tRNA synthetase, Domain 2 EEA47_13420 PF08264 Anticodon-binding domain of tRNA EEA47_13420 PF00133 tRNA synthetases class I (I, L, M and V) EEA47_13425 PF07295 Zinc-ribbon containing domain EEA47_13430 PF01797 Transposase IS200 like EEA47_13435 PF00795 Carbon-nitrogen hydrolase EEA47_13440 PF00571 CBS domain EEA47_13440 PF03471 Transporter associated domain EEA47_13445 PF02130 Uncharacterized protein family UPF0054 EEA47_13450 PF02562 PhoH-like protein EEA47_13455 PF04055 Radical SAM superfamily EEA47_13455 PF01938 TRAM domain EEA47_13455 PF00919 Uncharacterized protein family UPF0004 EEA47_13465 PF01494 FAD binding domain EEA47_13575 PF01926 50S ribosome-binding GTPase EEA47_13575 PF06071 Protein of unknown function (DUF933) EEA47_13580 PF01195 Peptidyl-tRNA hydrolase EEA47_13585 PF14572 Phosphoribosyl synthetase-associated domain EEA47_13585 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EEA47_13590 PF08544 GHMP kinases C terminal EEA47_13590 PF00288 GHMP kinases N terminal domain EEA47_13595 PF03550 Outer membrane lipoprotein LolB EEA47_13600 PF01488 Shikimate / quinate 5-dehydrogenase EEA47_13600 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EEA47_13600 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EEA47_13605 PF00472 RF-1 domain EEA47_13605 PF03462 PCRF domain EEA47_13610 PF13847 Methyltransferase domain EEA47_13610 PF17827 PrmC N-terminal domain EEA47_13615 PF04247 Invasion gene expression up-regulator, SirB EEA47_13620 PF13369 Transglutaminase-like superfamily EEA47_13625 PF00793 DAHP synthetase I family EEA47_13630 PF02872 5'-nucleotidase, C-terminal domain EEA47_13630 PF00149 Calcineurin-like phosphoesterase EEA47_13635 PF04073 Aminoacyl-tRNA editing domain EEA47_13640 PF01479 S4 domain EEA47_13640 PF00849 RNA pseudouridylate synthase EEA47_13645 PF01713 Smr domain EEA47_13670 PF02838 Glycosyl hydrolase family 20, domain 2 EEA47_13670 PF03173 Putative carbohydrate binding domain EEA47_13670 PF00728 Glycosyl hydrolase family 20, catalytic domain EEA47_13670 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain EEA47_13685 PF00403 Heavy-metal-associated domain EEA47_13695 PF13609 Gram-negative porin EEA47_13700 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EEA47_13705 PF00749 tRNA synthetases class I (E and Q), catalytic domain EEA47_13710 PF01389 OmpA-like transmembrane domain EEA47_13710 PF00691 OmpA family EEA47_13755 PF00072 Response regulator receiver domain EEA47_13755 PF01584 CheW-like domain EEA47_13760 PF03705 CheR methyltransferase, all-alpha domain EEA47_13760 PF01739 CheR methyltransferase, SAM binding domain EEA47_13765 PF00460 Flagella basal body rod protein EEA47_13770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_13770 PF00460 Flagella basal body rod protein EEA47_13775 PF13861 FlgD Tudor-like domain EEA47_13775 PF13860 FlgD Ig-like domain EEA47_13775 PF03963 Flagellar hook capping protein - N-terminal region EEA47_13780 PF00460 Flagella basal body rod protein EEA47_13780 PF07559 Flagellar basal body protein FlaE EEA47_13780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_13785 PF00460 Flagella basal body rod protein EEA47_13785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_13790 PF00460 Flagella basal body rod protein EEA47_13790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_13795 PF02107 Flagellar L-ring protein EEA47_13800 PF02119 Flagellar P-ring protein EEA47_13805 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EEA47_13805 PF10135 Rod binding protein EEA47_13810 PF07196 Flagellin hook IN motif EEA47_13810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_13815 PF00669 Bacterial flagellin N-terminal helical region EEA47_13820 PF00700 Bacterial flagellin C-terminal helical region EEA47_13820 PF07196 Flagellin hook IN motif EEA47_13820 PF00669 Bacterial flagellin N-terminal helical region EEA47_13830 PF00700 Bacterial flagellin C-terminal helical region EEA47_13830 PF07196 Flagellin hook IN motif EEA47_13830 PF00669 Bacterial flagellin N-terminal helical region EEA47_13835 PF07196 Flagellin hook IN motif EEA47_13835 PF00700 Bacterial flagellin C-terminal helical region EEA47_13835 PF00669 Bacterial flagellin N-terminal helical region EEA47_13840 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EEA47_13845 PF00391 PEP-utilising enzyme, mobile domain EEA47_13845 PF02896 PEP-utilising enzyme, TIM barrel domain EEA47_13845 PF05524 PEP-utilising enzyme, N-terminal EEA47_13850 PF00381 PTS HPr component phosphorylation site EEA47_13860 PF00291 Pyridoxal-phosphate dependent enzyme EEA47_13870 PF04354 ZipA, C-terminal FtsZ-binding domain EEA47_13875 PF00533 BRCA1 C Terminus (BRCT) domain EEA47_13875 PF01653 NAD-dependent DNA ligase adenylation domain EEA47_13875 PF03120 NAD-dependent DNA ligase OB-fold domain EEA47_13875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EEA47_13875 PF12826 Helix-hairpin-helix motif EEA47_13880 PF03573 outer membrane porin, OprD family EEA47_13900 PF16200 C-terminal region of band_7 EEA47_13900 PF01145 SPFH domain / Band 7 family EEA47_13905 PF11658 Cellulose biosynthesis protein BcsG EEA47_13910 PF10995 Cellulose biosynthesis GIL EEA47_13920 PF06564 Cellulose biosynthesis protein BcsQ EEA47_13925 PF03552 Cellulose synthase EEA47_13925 PF00535 Glycosyl transferase family 2 EEA47_13925 PF07238 PilZ domain EEA47_13930 PF03170 Bacterial cellulose synthase subunit EEA47_13935 PF01270 Glycosyl hydrolases family 8 EEA47_13940 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) EEA47_13940 PF13176 Tetratricopeptide repeat EEA47_13945 PF00085 Thioredoxin EEA47_13955 PF00106 short chain dehydrogenase EEA47_13960 PF08338 Domain of unknown function (DUF1731) EEA47_13960 PF01370 NAD dependent epimerase/dehydratase family EEA47_13965 PF07556 Protein of unknown function (DUF1538) EEA47_13970 PF07556 Protein of unknown function (DUF1538) EEA47_13990 PF12850 Calcineurin-like phosphoesterase superfamily domain EEA47_14005 PF17323 Trans-membrane regulatory protein ToxS EEA47_14010 PF00486 Transcriptional regulatory protein, C terminal EEA47_14015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_14015 PF00183 Hsp90 protein EEA47_14020 PF05191 Adenylate kinase, active site lid EEA47_14025 PF00762 Ferrochelatase EEA47_14030 PF00854 POT family EEA47_14035 PF02357 Transcription termination factor nusG EEA47_14040 PF13537 Glutamine amidotransferase domain EEA47_14040 PF00733 Asparagine synthase EEA47_14045 PF02254 TrkA-N domain EEA47_14045 PF00999 Sodium/hydrogen exchanger family EEA47_14050 PF01047 MarR family EEA47_14050 PF00480 ROK family EEA47_14055 PF01979 Amidohydrolase family EEA47_14065 PF00367 phosphotransferase system, EIIB EEA47_14065 PF02378 Phosphotransferase system, EIIC EEA47_14065 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EEA47_14070 PF00749 tRNA synthetases class I (E and Q), catalytic domain EEA47_14070 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EEA47_14075 PF01475 Ferric uptake regulator family EEA47_14085 PF00258 Flavodoxin EEA47_14095 PF12697 Alpha/beta hydrolase family EEA47_14100 PF03925 SeqA protein C-terminal domain EEA47_14100 PF17206 SeqA protein N-terminal domain EEA47_14105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEA47_14105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEA47_14105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEA47_14105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEA47_14115 PF01784 NIF3 (NGG1p interacting factor 3) EEA47_14120 PF00285 Citrate synthase, C-terminal domain EEA47_14125 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EEA47_14130 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EEA47_14135 PF00890 FAD binding domain EEA47_14135 PF02910 Fumarate reductase flavoprotein C-term EEA47_14140 PF13085 2Fe-2S iron-sulfur cluster binding domain EEA47_14145 PF02779 Transketolase, pyrimidine binding domain EEA47_14145 PF16870 2-oxoglutarate dehydrogenase C-terminal EEA47_14145 PF16078 2-oxoglutarate dehydrogenase N-terminus EEA47_14145 PF00676 Dehydrogenase E1 component EEA47_14150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EEA47_14150 PF00364 Biotin-requiring enzyme EEA47_14150 PF02817 e3 binding domain EEA47_14155 PF00549 CoA-ligase EEA47_14155 PF08442 ATP-grasp domain EEA47_14160 PF02629 CoA binding domain EEA47_14160 PF00549 CoA-ligase EEA47_14165 PF00950 ABC 3 transport family EEA47_14170 PF00005 ABC transporter EEA47_14175 PF01297 Zinc-uptake complex component A periplasmic EEA47_14180 PF12833 Helix-turn-helix domain EEA47_14180 PF02311 AraC-like ligand binding domain EEA47_14185 PF04023 FeoA domain EEA47_14190 PF07670 Nucleoside recognition EEA47_14190 PF02421 Ferrous iron transport protein B EEA47_14190 PF17910 FeoB cytosolic helical domain EEA47_14190 PF07664 Ferrous iron transport protein B C terminus EEA47_14210 PF03485 Arginyl tRNA synthetase N terminal domain EEA47_14210 PF00750 tRNA synthetases class I (R) EEA47_14210 PF05746 DALR anticodon binding domain EEA47_14220 PF06185 YecM protein EEA47_14230 PF00089 Trypsin EEA47_14235 PF01842 ACT domain EEA47_14235 PF00551 Formyl transferase EEA47_14240 PF13307 Helicase C-terminal domain EEA47_14240 PF04851 Type III restriction enzyme, res subunit EEA47_14245 PF00814 Glycoprotease family EEA47_14255 PF03843 Outer membrane lipoprotein Slp family EEA47_14260 PF00561 alpha/beta hydrolase fold EEA47_14265 PF00501 AMP-binding enzyme EEA47_14265 PF13193 AMP-binding enzyme C-terminal domain EEA47_14270 PF01612 3'-5' exonuclease EEA47_14270 PF00570 HRDC domain EEA47_14275 PF03776 Septum formation topological specificity factor MinE EEA47_14280 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EEA47_14285 PF05209 Septum formation inhibitor MinC, N-terminal domain EEA47_14285 PF03775 Septum formation inhibitor MinC, C-terminal domain EEA47_14290 PF05166 YcgL domain EEA47_14295 PF13406 Transglycosylase SLT domain EEA47_14300 PF03466 LysR substrate binding domain EEA47_14300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_14305 PF01773 Na+ dependent nucleoside transporter N-terminus EEA47_14305 PF07670 Nucleoside recognition EEA47_14305 PF07662 Na+ dependent nucleoside transporter C-terminus EEA47_14310 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EEA47_14310 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EEA47_14320 PF01209 ubiE/COQ5 methyltransferase family EEA47_14325 PF00109 Beta-ketoacyl synthase, N-terminal domain EEA47_14325 PF02801 Beta-ketoacyl synthase, C-terminal domain EEA47_14335 PF07977 FabA-like domain EEA47_14340 PF02801 Beta-ketoacyl synthase, C-terminal domain EEA47_14340 PF00109 Beta-ketoacyl synthase, N-terminal domain EEA47_14365 PF00221 Aromatic amino acid lyase EEA47_14370 PF00535 Glycosyl transferase family 2 EEA47_14375 PF07977 FabA-like domain EEA47_14390 PF00550 Phosphopantetheine attachment site EEA47_14395 PF00550 Phosphopantetheine attachment site EEA47_14420 PF04820 Tryptophan halogenase EEA47_14430 PF00271 Helicase conserved C-terminal domain EEA47_14430 PF00270 DEAD/DEAH box helicase EEA47_14435 PF02254 TrkA-N domain EEA47_14435 PF02080 TrkA-C domain EEA47_14440 PF02386 Cation transport protein EEA47_14455 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EEA47_14460 PF03480 Bacterial extracellular solute-binding protein, family 7 EEA47_14465 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EEA47_14470 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EEA47_14480 PF00072 Response regulator receiver domain EEA47_14480 PF02954 Bacterial regulatory protein, Fis family EEA47_14480 PF00158 Sigma-54 interaction domain EEA47_14485 PF02743 Cache domain EEA47_14485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_14485 PF00512 His Kinase A (phospho-acceptor) domain EEA47_14495 PF05697 Bacterial trigger factor protein (TF) EEA47_14495 PF05698 Bacterial trigger factor protein (TF) C-terminus EEA47_14495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEA47_14500 PF00574 Clp protease EEA47_14505 PF10431 C-terminal, D2-small domain, of ClpB protein EEA47_14505 PF07724 AAA domain (Cdc48 subfamily) EEA47_14505 PF06689 ClpX C4-type zinc finger EEA47_14510 PF02190 ATP-dependent protease La (LON) substrate-binding domain EEA47_14510 PF00004 ATPase family associated with various cellular activities (AAA) EEA47_14510 PF05362 Lon protease (S16) C-terminal proteolytic domain EEA47_14515 PF00216 Bacterial DNA-binding protein EEA47_14520 PF13145 PPIC-type PPIASE domain EEA47_14540 PF13286 Phosphohydrolase-associated domain EEA47_14540 PF01966 HD domain EEA47_14550 PF00155 Aminotransferase class I and II EEA47_14555 PF00425 chorismate binding enzyme EEA47_14560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEA47_14560 PF16582 Middle domain of thiamine pyrophosphate EEA47_14560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EEA47_14565 PF12697 Alpha/beta hydrolase family EEA47_14570 PF00378 Enoyl-CoA hydratase/isomerase EEA47_14575 PF13378 Enolase C-terminal domain-like EEA47_14580 PF00501 AMP-binding enzyme EEA47_14580 PF13193 AMP-binding enzyme C-terminal domain EEA47_14590 PF03601 Conserved hypothetical protein 698 EEA47_14595 PF07690 Major Facilitator Superfamily EEA47_14640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_14640 PF00529 HlyD membrane-fusion protein of T1SS EEA47_14645 PF00873 AcrB/AcrD/AcrF family EEA47_14660 PF00291 Pyridoxal-phosphate dependent enzyme EEA47_14665 PF01037 Lrp/AsnC ligand binding domain EEA47_14665 PF13404 AsnC-type helix-turn-helix domain EEA47_14680 PF09619 Type III secretion system lipoprotein chaperone (YscW) EEA47_14685 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EEA47_14695 PF00990 Diguanylate cyclase, GGDEF domain EEA47_14705 PF08032 RNA 2'-O ribose methyltransferase substrate binding EEA47_14705 PF00588 SpoU rRNA Methylase family EEA47_14710 PF00571 CBS domain EEA47_14710 PF00478 IMP dehydrogenase / GMP reductase domain EEA47_14715 PF00403 Heavy-metal-associated domain EEA47_14720 PF01048 Phosphorylase superfamily EEA47_14730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_14730 PF00672 HAMP domain EEA47_14735 PF01230 HIT domain EEA47_14750 PF13036 Peptidoglycan-synthase activator LpoB EEA47_14750 PF08139 Prokaryotic membrane lipoprotein lipid attachment site EEA47_14755 PF01636 Phosphotransferase enzyme family EEA47_14760 PF05728 Uncharacterised protein family (UPF0227) EEA47_14765 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_14780 PF02559 CarD-like/TRCF domain EEA47_14780 PF03461 TRCF domain EEA47_14780 PF17757 UvrB interaction domain EEA47_14780 PF00271 Helicase conserved C-terminal domain EEA47_14780 PF00270 DEAD/DEAH box helicase EEA47_14790 PF02687 FtsX-like permease family EEA47_14790 PF12704 MacB-like periplasmic core domain EEA47_14795 PF00005 ABC transporter EEA47_14800 PF02687 FtsX-like permease family EEA47_14800 PF12704 MacB-like periplasmic core domain EEA47_14810 PF03772 Competence protein EEA47_14810 PF13567 Domain of unknown function (DUF4131) EEA47_14810 PF00753 Metallo-beta-lactamase superfamily EEA47_14815 PF00005 ABC transporter EEA47_14815 PF00664 ABC transporter transmembrane region EEA47_14820 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EEA47_14825 PF03966 Trm112p-like protein EEA47_14830 PF02348 Cytidylyltransferase EEA47_14835 PF04293 SpoVR like protein EEA47_14840 PF04285 Protein of unknown function (DUF444) EEA47_14845 PF06798 PrkA serine protein kinase C-terminal domain EEA47_14845 PF08298 PrkA AAA domain EEA47_14855 PF03887 YfbU domain EEA47_14865 PF04055 Radical SAM superfamily EEA47_14875 PF01228 Glycine radical EEA47_14875 PF02901 Pyruvate formate lyase-like EEA47_14895 PF00005 ABC transporter EEA47_14900 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_14905 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_14910 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_14920 PF03372 Endonuclease/Exonuclease/phosphatase family EEA47_14925 PF10689 Protein of unknown function (DUF2496) EEA47_14930 PF07445 Primosomal replication protein priC EEA47_14935 PF01925 Sulfite exporter TauE/SafE EEA47_14940 PF13307 Helicase C-terminal domain EEA47_14940 PF06733 DEAD_2 EEA47_14950 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EEA47_14955 PF00849 RNA pseudouridylate synthase EEA47_14960 PF03971 Monomeric isocitrate dehydrogenase EEA47_14965 PF00313 'Cold-shock' DNA-binding domain EEA47_14970 PF02617 ATP-dependent Clp protease adaptor protein ClpS EEA47_14975 PF10431 C-terminal, D2-small domain, of ClpB protein EEA47_14975 PF02861 Clp amino terminal domain, pathogenicity island component EEA47_14975 PF00004 ATPase family associated with various cellular activities (AAA) EEA47_14975 PF17871 AAA lid domain EEA47_14975 PF07724 AAA domain (Cdc48 subfamily) EEA47_14980 PF01176 Translation initiation factor 1A / IF-1 EEA47_14985 PF04377 Arginine-tRNA-protein transferase, C terminus EEA47_14985 PF04376 Arginine-tRNA-protein transferase, N terminus EEA47_14990 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EEA47_15000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EEA47_15005 PF10692 Protein of unknown function (DUF2498) EEA47_15010 PF08272 Topoisomerase I zinc-ribbon-like EEA47_15010 PF01131 DNA topoisomerase EEA47_15010 PF01751 Toprim domain EEA47_15010 PF01396 Topoisomerase DNA binding C4 zinc finger EEA47_15015 PF00483 Nucleotidyl transferase EEA47_15020 PF08323 Starch synthase catalytic domain EEA47_15020 PF00534 Glycosyl transferases group 1 EEA47_15040 PF04993 TfoX N-terminal domain EEA47_15040 PF04994 TfoX C-terminal domain EEA47_15045 PF00356 Bacterial regulatory proteins, lacI family EEA47_15050 PF02613 Nitrate reductase delta subunit EEA47_15055 PF00072 Response regulator receiver domain EEA47_15055 PF00486 Transcriptional regulatory protein, C terminal EEA47_15060 PF02698 DUF218 domain EEA47_15065 PF13847 Methyltransferase domain EEA47_15070 PF17192 MukF middle domain EEA47_15070 PF17193 MukF C-terminal domain EEA47_15070 PF03882 MukF winged-helix domain EEA47_15075 PF04288 MukE-like family EEA47_15080 PF04310 MukB N-terminal EEA47_15080 PF16330 MukB hinge domain EEA47_15100 PF18030 RimK PreATP-grasp domain EEA47_15100 PF08443 RimK-like ATP-grasp domain EEA47_15110 PF08003 Protein of unknown function (DUF1698) EEA47_15115 PF13649 Methyltransferase domain EEA47_15120 PF01904 Protein of unknown function DUF72 EEA47_15125 PF00152 tRNA synthetases class II (D, K and N) EEA47_15125 PF02938 GAD domain EEA47_15125 PF01336 OB-fold nucleic acid binding domain EEA47_15130 PF01709 Transcriptional regulator EEA47_15135 PF02075 Crossover junction endodeoxyribonuclease RuvC EEA47_15140 PF07499 RuvA, C-terminal domain EEA47_15140 PF01330 RuvA N terminal domain EEA47_15145 PF17864 RuvB AAA lid domain EEA47_15145 PF05496 Holliday junction DNA helicase RuvB P-loop domain EEA47_15145 PF05491 RuvB C-terminal winged helix domain EEA47_15150 PF01654 Cytochrome bd terminal oxidase subunit I EEA47_15155 PF02322 Cytochrome bd terminal oxidase subunit II EEA47_15160 PF08173 Membrane bound YbgT-like protein EEA47_15170 PF03061 Thioesterase superfamily EEA47_15175 PF01618 MotA/TolQ/ExbB proton channel family EEA47_15180 PF02472 Biopolymer transport protein ExbD/TolR EEA47_15190 PF07676 WD40-like Beta Propeller Repeat EEA47_15190 PF04052 TolB amino-terminal domain EEA47_15195 PF00691 OmpA family EEA47_15200 PF16331 TolA binding protein trimerisation EEA47_15200 PF13174 Tetratricopeptide repeat EEA47_15205 PF02445 Quinolinate synthetase A protein EEA47_15215 PF03994 Domain of Unknown Function (DUF350) EEA47_15225 PF03738 Glutathionylspermidine synthase preATP-grasp EEA47_15235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_15235 PF09308 LuxQ, periplasmic EEA47_15235 PF00072 Response regulator receiver domain EEA47_15235 PF00512 His Kinase A (phospho-acceptor) domain EEA47_15240 PF06610 L-alanine exporter EEA47_15250 PF02322 Cytochrome bd terminal oxidase subunit II EEA47_15255 PF01654 Cytochrome bd terminal oxidase subunit I EEA47_15270 PF00672 HAMP domain EEA47_15270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_15270 PF17200 Single Cache domain 2 EEA47_15275 PF00529 HlyD membrane-fusion protein of T1SS EEA47_15275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_15280 PF00873 AcrB/AcrD/AcrF family EEA47_15295 PF00579 tRNA synthetases class I (W and Y) EEA47_15305 PF03372 Endonuclease/Exonuclease/phosphatase family EEA47_15315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_15315 PF00672 HAMP domain EEA47_15320 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EEA47_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_15330 PF03466 LysR substrate binding domain EEA47_15340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EEA47_15340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EEA47_15345 PF01037 Lrp/AsnC ligand binding domain EEA47_15350 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EEA47_15350 PF17854 FtsK alpha domain EEA47_15350 PF09397 Ftsk gamma domain EEA47_15350 PF01580 FtsK/SpoIIIE family EEA47_15355 PF03548 Outer membrane lipoprotein carrier protein LolA EEA47_15360 PF00004 ATPase family associated with various cellular activities (AAA) EEA47_15360 PF16193 AAA C-terminal domain EEA47_15360 PF12002 MgsA AAA+ ATPase C terminal EEA47_15365 PF02403 Seryl-tRNA synthetase N-terminal domain EEA47_15365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EEA47_15380 PF01258 Prokaryotic dksA/traR C4-type zinc finger EEA47_15385 PF00202 Aminotransferase class-III EEA47_15390 PF04055 Radical SAM superfamily EEA47_15390 PF06968 Biotin and Thiamin Synthesis associated domain EEA47_15395 PF00155 Aminotransferase class I and II EEA47_15400 PF08241 Methyltransferase domain EEA47_15415 PF01435 Peptidase family M48 EEA47_15425 PF00106 short chain dehydrogenase EEA47_15450 PF16036 Chalcone isomerase-like EEA47_15460 PF08328 Adenylosuccinate lyase C-terminal EEA47_15460 PF00206 Lyase EEA47_15465 PF04356 Protein of unknown function (DUF489) EEA47_15480 PF00294 pfkB family carbohydrate kinase EEA47_15485 PF00816 H-NS histone family EEA47_15490 PF03553 Na+/H+ antiporter family EEA47_15495 PF01634 ATP phosphoribosyltransferase EEA47_15495 PF08029 HisG, C-terminal domain EEA47_15500 PF00815 Histidinol dehydrogenase EEA47_15505 PF00155 Aminotransferase class I and II EEA47_15510 PF08645 Polynucleotide kinase 3 phosphatase EEA47_15510 PF00475 Imidazoleglycerol-phosphate dehydratase EEA47_15515 PF00117 Glutamine amidotransferase class-I EEA47_15520 PF00977 Histidine biosynthesis protein EEA47_15525 PF00977 Histidine biosynthesis protein EEA47_15530 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EEA47_15530 PF01502 Phosphoribosyl-AMP cyclohydrolase EEA47_15535 PF02810 SEC-C motif EEA47_15540 PF00563 EAL domain EEA47_15540 PF08668 HDOD domain EEA47_15545 PF00149 Calcineurin-like phosphoesterase EEA47_15550 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EEA47_15555 PF01406 tRNA synthetases class I (C) catalytic domain EEA47_15555 PF09190 DALR domain EEA47_15560 PF00265 Thymidine kinase EEA47_15590 PF01226 Formate/nitrite transporter EEA47_15600 PF03649 Uncharacterised protein family (UPF0014) EEA47_15605 PF06796 Periplasmic nitrate reductase protein NapE EEA47_15610 PF03264 NapC/NirT cytochrome c family, N-terminal region EEA47_15615 PF00384 Molybdopterin oxidoreductase EEA47_15615 PF01568 Molydopterin dinucleotide binding domain EEA47_15615 PF18364 Molybdopterin oxidoreductase N-terminal domain EEA47_15620 PF16875 Glycosyl hydrolase family 36 N-terminal domain EEA47_15620 PF16874 Glycosyl hydrolase family 36 C-terminal domain EEA47_15630 PF01368 DHH family EEA47_15630 PF02833 DHHA2 domain EEA47_15640 PF00005 ABC transporter EEA47_15645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_15645 PF00005 ABC transporter EEA47_15650 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_15650 PF12911 N-terminal TM domain of oligopeptide transport permease C EEA47_15655 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_15660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_15665 PF00158 Sigma-54 interaction domain EEA47_15665 PF02954 Bacterial regulatory protein, Fis family EEA47_15670 PF04012 PspA/IM30 family EEA47_15675 PF06667 Phage shock protein B EEA47_15680 PF04024 PspC domain EEA47_15690 PF13533 Biotin-lipoyl like EEA47_15695 PF00873 AcrB/AcrD/AcrF family EEA47_15700 PF03352 Methyladenine glycosylase EEA47_15705 PF03280 Proteobacterial lipase chaperone protein EEA47_15710 PF00561 alpha/beta hydrolase fold EEA47_15715 PF01053 Cys/Met metabolism PLP-dependent enzyme EEA47_15720 PF13396 Phospholipase_D-nuclease N-terminal EEA47_15720 PF13091 PLD-like domain EEA47_15725 PF00209 Sodium:neurotransmitter symporter family EEA47_15730 PF00849 RNA pseudouridylate synthase EEA47_15740 PF00175 Oxidoreductase NAD-binding domain EEA47_15740 PF00111 2Fe-2S iron-sulfur cluster binding domain EEA47_15740 PF00970 Oxidoreductase FAD-binding domain EEA47_15745 PF03063 Prismane/CO dehydrogenase family EEA47_15750 PF00158 Sigma-54 interaction domain EEA47_15750 PF01590 GAF domain EEA47_15765 PF01066 CDP-alcohol phosphatidyltransferase EEA47_15770 PF00005 ABC transporter EEA47_15775 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_15780 PF13416 Bacterial extracellular solute-binding protein EEA47_15790 PF06945 Protein of unknown function (DUF1289) EEA47_15805 PF02872 5'-nucleotidase, C-terminal domain EEA47_15805 PF00149 Calcineurin-like phosphoesterase EEA47_15815 PF01386 Ribosomal L25p family EEA47_15820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_15825 PF00072 Response regulator receiver domain EEA47_15825 PF00486 Transcriptional regulatory protein, C terminal EEA47_15835 PF04851 Type III restriction enzyme, res subunit EEA47_15835 PF00271 Helicase conserved C-terminal domain EEA47_15840 PF01479 S4 domain EEA47_15840 PF00849 RNA pseudouridylate synthase EEA47_15850 PF07690 Major Facilitator Superfamily EEA47_15860 PF11066 Protein of unknown function (DUF2867) EEA47_15860 PF13460 NAD(P)H-binding EEA47_15865 PF01554 MatE EEA47_15870 PF00005 ABC transporter EEA47_15885 PF06965 Na+/H+ antiporter 1 EEA47_15890 PF00440 Bacterial regulatory proteins, tetR family EEA47_15890 PF16295 Tetracyclin repressor-like, C-terminal domain EEA47_15895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EEA47_15895 PF02770 Acyl-CoA dehydrogenase, middle domain EEA47_15895 PF09317 Domain of unknown function (DUF1974) EEA47_15895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EEA47_15900 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase EEA47_15900 PF12241 Trans-2-enoyl-CoA reductase catalytic region EEA47_15900 PF07055 Enoyl reductase FAD binding domain EEA47_15905 PF06826 Predicted Permease Membrane Region EEA47_15905 PF02080 TrkA-C domain EEA47_15910 PF00462 Glutaredoxin EEA47_15915 PF00465 Iron-containing alcohol dehydrogenase EEA47_15920 PF01380 SIS domain EEA47_15920 PF01418 Helix-turn-helix domain, rpiR family EEA47_15925 PF00282 Pyridoxal-dependent decarboxylase conserved domain EEA47_15935 PF03956 Lysine exporter LysO EEA47_15955 PF04994 TfoX C-terminal domain EEA47_15955 PF04993 TfoX N-terminal domain EEA47_15970 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_15970 PF00512 His Kinase A (phospho-acceptor) domain EEA47_15980 PF00266 Aminotransferase class-V EEA47_15985 PF00291 Pyridoxal-phosphate dependent enzyme EEA47_15990 PF00664 ABC transporter transmembrane region EEA47_15990 PF00005 ABC transporter EEA47_15995 PF00005 ABC transporter EEA47_15995 PF00664 ABC transporter transmembrane region EEA47_16000 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_16010 PF00266 Aminotransferase class-V EEA47_16020 PF00072 Response regulator receiver domain EEA47_16020 PF00990 Diguanylate cyclase, GGDEF domain EEA47_16025 PF00939 Sodium:sulfate symporter transmembrane region EEA47_16030 PF02698 DUF218 domain EEA47_16035 PF03949 Malic enzyme, NAD binding domain EEA47_16035 PF00390 Malic enzyme, N-terminal domain EEA47_16040 PF04408 Helicase associated domain (HA2) EEA47_16040 PF00271 Helicase conserved C-terminal domain EEA47_16040 PF00270 DEAD/DEAH box helicase EEA47_16040 PF11898 Domain of unknown function (DUF3418) EEA47_16040 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EEA47_16050 PF09423 PhoD-like phosphatase EEA47_16050 PF16655 PhoD-like phosphatase, N-terminal domain EEA47_16055 PF01259 SAICAR synthetase EEA47_16060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_16060 PF08447 PAS fold EEA47_16060 PF13426 PAS domain EEA47_16070 PF00682 HMGL-like EEA47_16075 PF00378 Enoyl-CoA hydratase/isomerase EEA47_16080 PF01039 Carboxyl transferase domain EEA47_16085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EEA47_16085 PF02770 Acyl-CoA dehydrogenase, middle domain EEA47_16085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EEA47_16090 PF00376 MerR family regulatory protein EEA47_16090 PF09278 MerR, DNA binding EEA47_16095 PF02803 Thiolase, C-terminal domain EEA47_16095 PF00108 Thiolase, N-terminal domain EEA47_16100 PF00171 Aldehyde dehydrogenase family EEA47_16105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EEA47_16105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EEA47_16105 PF02770 Acyl-CoA dehydrogenase, middle domain EEA47_16110 PF00378 Enoyl-CoA hydratase/isomerase EEA47_16115 PF00378 Enoyl-CoA hydratase/isomerase EEA47_16120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EEA47_16120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EEA47_16130 PF06481 COX Aromatic Rich Motif EEA47_16130 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EEA47_16135 PF00115 Cytochrome C and Quinol oxidase polypeptide I EEA47_16140 PF00510 Cytochrome c oxidase subunit III EEA47_16150 PF01040 UbiA prenyltransferase family EEA47_16155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EEA47_16155 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_16170 PF00171 Aldehyde dehydrogenase family EEA47_16180 PF02028 BCCT, betaine/carnitine/choline family transporter EEA47_16210 PF00005 ABC transporter EEA47_16215 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_16220 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_16225 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_16235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_16235 PF03466 LysR substrate binding domain EEA47_16240 PF00043 Glutathione S-transferase, C-terminal domain EEA47_16240 PF13417 Glutathione S-transferase, N-terminal domain EEA47_16250 PF03466 LysR substrate binding domain EEA47_16250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_16260 PF01012 Electron transfer flavoprotein domain EEA47_16260 PF00766 Electron transfer flavoprotein FAD-binding domain EEA47_16265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EEA47_16265 PF00364 Biotin-requiring enzyme EEA47_16265 PF02817 e3 binding domain EEA47_16270 PF02779 Transketolase, pyrimidine binding domain EEA47_16270 PF02780 Transketolase, C-terminal domain EEA47_16275 PF00676 Dehydrogenase E1 component EEA47_16290 PF00474 Sodium:solute symporter family EEA47_16295 PF11490 DNA polymerase III polC-type N-terminus II EEA47_16295 PF00929 Exonuclease EEA47_16295 PF02811 PHP domain EEA47_16295 PF14579 Helix-hairpin-helix motif EEA47_16295 PF07733 Bacterial DNA polymerase III alpha NTPase domain EEA47_16295 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EEA47_16300 PF00571 CBS domain EEA47_16305 PF00392 Bacterial regulatory proteins, gntR family EEA47_16305 PF07729 FCD domain EEA47_16310 PF00392 Bacterial regulatory proteins, gntR family EEA47_16310 PF07729 FCD domain EEA47_16320 PF08787 Alginate lyase EEA47_16335 PF08787 Alginate lyase EEA47_16340 PF08787 Alginate lyase EEA47_16345 PF07940 Heparinase II/III-like protein EEA47_16345 PF05426 Alginate lyase EEA47_16350 PF05426 Alginate lyase EEA47_16350 PF07940 Heparinase II/III-like protein EEA47_16355 PF07883 Cupin domain EEA47_16360 PF00294 pfkB family carbohydrate kinase EEA47_16365 PF01081 KDPG and KHG aldolase EEA47_16375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EEA47_16375 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EEA47_16385 PF04314 Copper chaperone PCu(A)C EEA47_16410 PF00072 Response regulator receiver domain EEA47_16410 PF00486 Transcriptional regulatory protein, C terminal EEA47_16430 PF01483 Proprotein convertase P-domain EEA47_16430 PF00082 Subtilase family EEA47_16440 PF00990 Diguanylate cyclase, GGDEF domain EEA47_16450 PF03222 Tryptophan/tyrosine permease family EEA47_16460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EEA47_16460 PF00384 Molybdopterin oxidoreductase EEA47_16460 PF01568 Molydopterin dinucleotide binding domain EEA47_16465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EEA47_16465 PF10414 Sirohaem synthase dimerisation region EEA47_16465 PF14824 Sirohaem biosynthesis protein central EEA47_16470 PF02885 Glycosyl transferase family, helical bundle domain EEA47_16470 PF00591 Glycosyl transferase family, a/b domain EEA47_16475 PF01738 Dienelactone hydrolase family EEA47_16480 PF03861 ANTAR domain EEA47_16480 PF00072 Response regulator receiver domain EEA47_16490 PF00005 ABC transporter EEA47_16495 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_16500 PF00005 ABC transporter EEA47_16505 PF13806 Rieske-like [2Fe-2S] domain EEA47_16505 PF18267 Rubredoxin NAD+ reductase C-terminal domain EEA47_16505 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EEA47_16505 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EEA47_16505 PF04324 BFD-like [2Fe-2S] binding domain EEA47_16505 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_16535 PF00211 Adenylate and Guanylate cyclase catalytic domain EEA47_16535 PF00072 Response regulator receiver domain EEA47_16550 PF03793 PASTA domain EEA47_16550 PF00069 Protein kinase domain EEA47_16565 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE EEA47_16570 PF13677 Membrane MotB of proton-channel complex MotA/MotB EEA47_16570 PF00691 OmpA family EEA47_16575 PF06744 Type VI secretion protein IcmF C-terminal EEA47_16575 PF14331 ImcF-related N-terminal domain EEA47_16575 PF06761 Intracellular multiplication and human macrophage-killing EEA47_16595 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 EEA47_16600 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath EEA47_16605 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath EEA47_16620 PF05947 Type VI secretion system, TssF EEA47_16630 PF10431 C-terminal, D2-small domain, of ClpB protein EEA47_16630 PF17871 AAA lid domain EEA47_16630 PF07724 AAA domain (Cdc48 subfamily) EEA47_16630 PF00004 ATPase family associated with various cellular activities (AAA) EEA47_16640 PF06715 Gp5 C-terminal repeat (3 copies) EEA47_16640 PF04717 Type VI secretion system, phage-baseplate injector EEA47_16655 PF00149 Calcineurin-like phosphoesterase EEA47_16655 PF12320 Type 5 capsule protein repressor C-terminal domain EEA47_16660 PF13476 AAA domain EEA47_16670 PF08212 Lipocalin-like domain EEA47_16680 PF03606 C4-dicarboxylate anaerobic carrier EEA47_16690 PF01212 Beta-eliminating lyase EEA47_16700 PF07728 AAA domain (dynein-related subfamily) EEA47_16700 PF17868 AAA lid domain EEA47_16700 PF12592 Protein of unknown function (DUF3763) EEA47_16705 PF05762 VWA domain containing CoxE-like protein EEA47_16720 PF03466 LysR substrate binding domain EEA47_16720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_16725 PF09330 D-lactate dehydrogenase, membrane binding EEA47_16725 PF01565 FAD binding domain EEA47_16740 PF01168 Alanine racemase, N-terminal domain EEA47_16740 PF00842 Alanine racemase, C-terminal domain EEA47_16745 PF00672 HAMP domain EEA47_16745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_16760 PF00128 Alpha amylase, catalytic domain EEA47_16760 PF09154 Domain of unknown function (DUF1939) EEA47_16795 PF00296 Luciferase-like monooxygenase EEA47_16800 PF00563 EAL domain EEA47_16800 PF00990 Diguanylate cyclase, GGDEF domain EEA47_16800 PF03707 Bacterial signalling protein N terminal repeat EEA47_16810 PF03707 Bacterial signalling protein N terminal repeat EEA47_16810 PF00990 Diguanylate cyclase, GGDEF domain EEA47_16810 PF00563 EAL domain EEA47_16820 PF14760 Rnk N-terminus EEA47_16820 PF01272 Transcription elongation factor, GreA/GreB, C-term EEA47_16825 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EEA47_16825 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EEA47_16825 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_16825 PF18267 Rubredoxin NAD+ reductase C-terminal domain EEA47_16825 PF04324 BFD-like [2Fe-2S] binding domain EEA47_16830 PF13806 Rieske-like [2Fe-2S] domain EEA47_16835 PF01226 Formate/nitrite transporter EEA47_16840 PF10414 Sirohaem synthase dimerisation region EEA47_16840 PF14824 Sirohaem biosynthesis protein central EEA47_16840 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EEA47_16855 PF03605 Anaerobic c4-dicarboxylate membrane transporter EEA47_16870 PF07715 TonB-dependent Receptor Plug Domain EEA47_16870 PF00593 TonB dependent receptor EEA47_16880 PF13302 Acetyltransferase (GNAT) domain EEA47_16885 PF11756 Nitrous oxide-stimulated promoter EEA47_16890 PF07690 Major Facilitator Superfamily EEA47_16895 PF00085 Thioredoxin EEA47_16900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EEA47_16900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EEA47_16920 PF01238 Phosphomannose isomerase type I EEA47_16925 PF07690 Major Facilitator Superfamily EEA47_16930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_16930 PF07730 Histidine kinase EEA47_16930 PF05231 MASE1 EEA47_16935 PF00196 Bacterial regulatory proteins, luxR family EEA47_16935 PF00072 Response regulator receiver domain EEA47_16940 PF07690 Major Facilitator Superfamily EEA47_16945 PF02634 FdhD/NarQ family EEA47_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_16950 PF03466 LysR substrate binding domain EEA47_16960 PF00384 Molybdopterin oxidoreductase EEA47_16975 PF02567 Phenazine biosynthesis-like protein EEA47_16980 PF01177 Asp/Glu/Hydantoin racemase EEA47_16985 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_16985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEA47_17025 PF12801 4Fe-4S binding domain EEA47_17045 PF11756 Nitrous oxide-stimulated promoter EEA47_17050 PF00127 Copper binding proteins, plastocyanin/azurin family EEA47_17055 PF01590 GAF domain EEA47_17055 PF00158 Sigma-54 interaction domain EEA47_17060 PF00753 Metallo-beta-lactamase superfamily EEA47_17060 PF00301 Rubredoxin EEA47_17060 PF00258 Flavodoxin EEA47_17065 PF18113 Rubredoxin binding C-terminal domain EEA47_17065 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_17075 PF00672 HAMP domain EEA47_17075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_17075 PF17200 Single Cache domain 2 EEA47_17085 PF01814 Hemerythrin HHE cation binding domain EEA47_17085 PF04405 Domain of Unknown function (DUF542) EEA47_17090 PF00072 Response regulator receiver domain EEA47_17090 PF00196 Bacterial regulatory proteins, luxR family EEA47_17095 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EEA47_17095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_17095 PF00672 HAMP domain EEA47_17095 PF07730 Histidine kinase EEA47_17100 PF07690 Major Facilitator Superfamily EEA47_17105 PF00384 Molybdopterin oxidoreductase EEA47_17105 PF01568 Molydopterin dinucleotide binding domain EEA47_17105 PF14710 Respiratory nitrate reductase alpha N-terminal EEA47_17110 PF13247 4Fe-4S dicluster domain EEA47_17110 PF14711 Respiratory nitrate reductase beta C-terminal EEA47_17115 PF02613 Nitrate reductase delta subunit EEA47_17120 PF02665 Nitrate reductase gamma subunit EEA47_17145 PF13817 IS66 C-terminal element EEA47_17145 PF13005 zinc-finger binding domain of transposase IS66 EEA47_17145 PF13007 Transposase C of IS166 homeodomain EEA47_17145 PF03050 Transposase IS66 family EEA47_17175 PF02899 Phage integrase, N-terminal SAM-like domain EEA47_17175 PF00589 Phage integrase family EEA47_17185 PF00582 Universal stress protein family EEA47_17190 PF00999 Sodium/hydrogen exchanger family EEA47_17190 PF02254 TrkA-N domain EEA47_17205 PF05552 Conserved TM helix EEA47_17205 PF00924 Mechanosensitive ion channel EEA47_17210 PF01699 Sodium/calcium exchanger protein EEA47_17215 PF02673 Bacitracin resistance protein BacA EEA47_17225 PF00563 EAL domain EEA47_17225 PF00196 Bacterial regulatory proteins, luxR family EEA47_17250 PF11798 IMS family HHH motif EEA47_17250 PF11799 impB/mucB/samB family C-terminal domain EEA47_17250 PF00817 impB/mucB/samB family EEA47_17250 PF13438 Domain of unknown function (DUF4113) EEA47_17255 PF00717 Peptidase S24-like EEA47_17270 PF02384 N-6 DNA Methylase EEA47_17335 PF13657 HipA N-terminal domain EEA47_17335 PF07804 HipA-like C-terminal domain EEA47_17340 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_17340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEA47_17355 PF04143 Sulphur transport EEA47_17370 PF13597 Anaerobic ribonucleoside-triphosphate reductase EEA47_17370 PF03477 ATP cone domain EEA47_17380 PF01554 MatE EEA47_17385 PF12833 Helix-turn-helix domain EEA47_17385 PF12852 Cupin EEA47_17390 PF00155 Aminotransferase class I and II EEA47_17395 PF18030 RimK PreATP-grasp domain EEA47_17395 PF08443 RimK-like ATP-grasp domain EEA47_17405 PF04076 Bacterial OB fold (BOF) protein EEA47_17410 PF07685 CobB/CobQ-like glutamine amidotransferase domain EEA47_17410 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EEA47_17420 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_17425 PF03459 TOBE domain EEA47_17425 PF00005 ABC transporter EEA47_17435 PF00563 EAL domain EEA47_17435 PF01590 GAF domain EEA47_17435 PF00360 Phytochrome region EEA47_17435 PF00990 Diguanylate cyclase, GGDEF domain EEA47_17440 PF00990 Diguanylate cyclase, GGDEF domain EEA47_17455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EEA47_17455 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EEA47_17455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EEA47_17460 PF02233 NAD(P) transhydrogenase beta subunit EEA47_17470 PF00072 Response regulator receiver domain EEA47_17470 PF00486 Transcriptional regulatory protein, C terminal EEA47_17485 PF03701 Uncharacterised protein family (UPF0181) EEA47_17635 PF01253 Translation initiation factor SUI1 EEA47_17645 PF01820 D-ala D-ala ligase N-terminus EEA47_17645 PF07478 D-ala D-ala ligase C-terminus EEA47_17650 PF05036 Sporulation related domain EEA47_17655 PF00583 Acetyltransferase (GNAT) family EEA47_17655 PF13380 CoA binding domain EEA47_17655 PF13607 Succinyl-CoA ligase like flavodoxin domain EEA47_17660 PF03466 LysR substrate binding domain EEA47_17660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_17665 PF04886 PT repeat EEA47_17665 PF07715 TonB-dependent Receptor Plug Domain EEA47_17665 PF00593 TonB dependent receptor EEA47_17675 PF16363 GDP-mannose 4,6 dehydratase EEA47_17680 PF00563 EAL domain EEA47_17680 PF00990 Diguanylate cyclase, GGDEF domain EEA47_17680 PF05231 MASE1 EEA47_17680 PF08448 PAS fold EEA47_17680 PF13426 PAS domain EEA47_17680 PF08447 PAS fold EEA47_17685 PF03746 LamB/YcsF family EEA47_17690 PF02682 Carboxyltransferase domain, subdomain C and D EEA47_17695 PF02626 Carboxyltransferase domain, subdomain A and B EEA47_17710 PF00005 ABC transporter EEA47_17715 PF13472 GDSL-like Lipase/Acylhydrolase family EEA47_17720 PF12241 Trans-2-enoyl-CoA reductase catalytic region EEA47_17720 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase EEA47_17720 PF07055 Enoyl reductase FAD binding domain EEA47_17725 PF13188 PAS domain EEA47_17725 PF03707 Bacterial signalling protein N terminal repeat EEA47_17725 PF00990 Diguanylate cyclase, GGDEF domain EEA47_17725 PF00563 EAL domain EEA47_17735 PF00684 DnaJ central domain EEA47_17735 PF00226 DnaJ domain EEA47_17735 PF01556 DnaJ C terminal domain EEA47_17760 PF12793 Sugar transport-related sRNA regulator N-term EEA47_17760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_17770 PF03061 Thioesterase superfamily EEA47_17785 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EEA47_17790 PF12262 Bacterial virulence factor lipase N-terminal EEA47_17810 PF03741 Integral membrane protein TerC family EEA47_17815 PF00149 Calcineurin-like phosphoesterase EEA47_17815 PF02872 5'-nucleotidase, C-terminal domain EEA47_17820 PF11398 Protein of unknown function (DUF2813) EEA47_17825 PF06496 Protein of unknown function (DUF1097) EEA47_17830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_17830 PF03466 LysR substrate binding domain EEA47_17840 PF01226 Formate/nitrite transporter EEA47_17845 PF04264 YceI-like domain EEA47_17850 PF01292 Prokaryotic cytochrome b561 EEA47_17870 PF00270 DEAD/DEAH box helicase EEA47_17870 PF00271 Helicase conserved C-terminal domain EEA47_17875 PF04336 Acyl carrier protein phosphodiesterase EEA47_17885 PF12729 Four helix bundle sensory module for signal transduction EEA47_17885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_17885 PF00672 HAMP domain EEA47_17895 PF13419 Haloacid dehalogenase-like hydrolase EEA47_17910 PF00294 pfkB family carbohydrate kinase EEA47_17915 PF01268 Formate--tetrahydrofolate ligase EEA47_17920 PF00483 Nucleotidyl transferase EEA47_17925 PF06483 Chitinase C EEA47_17925 PF00704 Glycosyl hydrolases family 18 EEA47_17935 PF06719 AraC-type transcriptional regulator N-terminus EEA47_17935 PF12833 Helix-turn-helix domain EEA47_17940 PF00465 Iron-containing alcohol dehydrogenase EEA47_17950 PF00005 ABC transporter EEA47_17955 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_17960 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_17965 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_17970 PF01590 GAF domain EEA47_17970 PF00989 PAS fold EEA47_17970 PF00990 Diguanylate cyclase, GGDEF domain EEA47_17970 PF00563 EAL domain EEA47_17985 PF00356 Bacterial regulatory proteins, lacI family EEA47_17985 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EEA47_17990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEA47_17990 PF00381 PTS HPr component phosphorylation site EEA47_17995 PF00294 pfkB family carbohydrate kinase EEA47_18000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EEA47_18000 PF02378 Phosphotransferase system, EIIC EEA47_18010 PF00873 AcrB/AcrD/AcrF family EEA47_18030 PF08669 Glycine cleavage T-protein C-terminal barrel domain EEA47_18030 PF01571 Aminomethyltransferase folate-binding domain EEA47_18040 PF00464 Serine hydroxymethyltransferase EEA47_18045 PF01597 Glycine cleavage H-protein EEA47_18050 PF02347 Glycine cleavage system P-protein EEA47_18055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEA47_18070 PF00753 Metallo-beta-lactamase superfamily EEA47_18070 PF16123 Hydroxyacylglutathione hydrolase C-terminus EEA47_18075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_18075 PF03466 LysR substrate binding domain EEA47_18085 PF02627 Carboxymuconolactone decarboxylase family EEA47_18090 PF12833 Helix-turn-helix domain EEA47_18115 PF00929 Exonuclease EEA47_18115 PF02811 PHP domain EEA47_18115 PF14579 Helix-hairpin-helix motif EEA47_18115 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EEA47_18115 PF07733 Bacterial DNA polymerase III alpha NTPase domain EEA47_18115 PF11490 DNA polymerase III polC-type N-terminus II EEA47_18120 PF00664 ABC transporter transmembrane region EEA47_18120 PF00005 ABC transporter EEA47_18140 PF02253 Phospholipase A1 EEA47_18155 PF01327 Polypeptide deformylase EEA47_18180 PF00571 CBS domain EEA47_18180 PF01769 Divalent cation transporter EEA47_18180 PF03448 MgtE intracellular N domain EEA47_18200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEA47_18205 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EEA47_18215 PF01757 Acyltransferase family EEA47_18225 PF09722 Protein of unknown function (DUF2384) EEA47_18230 PF00141 Peroxidase EEA47_18235 PF13187 4Fe-4S dicluster domain EEA47_18235 PF01645 Conserved region in glutamate synthase EEA47_18245 PF00171 Aldehyde dehydrogenase family EEA47_18260 PF00892 EamA-like transporter family EEA47_18265 PF00893 Small Multidrug Resistance protein EEA47_18285 PF00892 EamA-like transporter family EEA47_18295 PF07963 Prokaryotic N-terminal methylation motif EEA47_18295 PF08334 Type II secretion system (T2SS), protein G EEA47_18300 PF00072 Response regulator receiver domain EEA47_18300 PF01584 CheW-like domain EEA47_18310 PF00072 Response regulator receiver domain EEA47_18310 PF00196 Bacterial regulatory proteins, luxR family EEA47_18320 PF00990 Diguanylate cyclase, GGDEF domain EEA47_18325 PF00072 Response regulator receiver domain EEA47_18325 PF00196 Bacterial regulatory proteins, luxR family EEA47_18330 PF00563 EAL domain EEA47_18330 PF00990 Diguanylate cyclase, GGDEF domain EEA47_18330 PF13188 PAS domain EEA47_18330 PF03707 Bacterial signalling protein N terminal repeat EEA47_18335 PF09456 RcsC Alpha-Beta-Loop (ABL) EEA47_18335 PF00072 Response regulator receiver domain EEA47_18335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_18335 PF00512 His Kinase A (phospho-acceptor) domain EEA47_18340 PF01926 50S ribosome-binding GTPase EEA47_18345 PF00155 Aminotransferase class I and II EEA47_18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_18350 PF00072 Response regulator receiver domain EEA47_18365 PF00583 Acetyltransferase (GNAT) family EEA47_18365 PF00814 Glycoprotease family EEA47_18375 PF03606 C4-dicarboxylate anaerobic carrier EEA47_18390 PF18081 Fanconi anemia-associated nuclease SAP domain EEA47_18390 PF08774 VRR-NUC domain EEA47_18400 PF04076 Bacterial OB fold (BOF) protein EEA47_18405 PF00781 Diacylglycerol kinase catalytic domain EEA47_18410 PF03466 LysR substrate binding domain EEA47_18410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_18415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EEA47_18430 PF00092 von Willebrand factor type A domain EEA47_18445 PF07726 ATPase family associated with various cellular activities (AAA) EEA47_18445 PF17863 AAA lid domain EEA47_18450 PF04055 Radical SAM superfamily EEA47_18450 PF13186 Iron-sulfur cluster-binding domain EEA47_18455 PF16385 Domain of unknown function EEA47_18455 PF00884 Sulfatase EEA47_18460 PF03466 LysR substrate binding domain EEA47_18460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_18465 PF00884 Sulfatase EEA47_18470 PF00486 Transcriptional regulatory protein, C terminal EEA47_18470 PF00072 Response regulator receiver domain EEA47_18485 PF00072 Response regulator receiver domain EEA47_18485 PF01627 Hpt domain EEA47_18485 PF00512 His Kinase A (phospho-acceptor) domain EEA47_18485 PF00672 HAMP domain EEA47_18485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_18490 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EEA47_18495 PF02142 MGS-like domain EEA47_18500 PF13361 UvrD-like helicase C-terminal domain EEA47_18500 PF12462 DNA helicase IV / RNA helicase N terminal EEA47_18500 PF00580 UvrD/REP helicase N-terminal domain EEA47_18505 PF12805 FUSC-like inner membrane protein yccS EEA47_18540 PF07715 TonB-dependent Receptor Plug Domain EEA47_18540 PF00593 TonB dependent receptor EEA47_18550 PF13411 MerR HTH family regulatory protein EEA47_18555 PF00005 ABC transporter EEA47_18560 PF01032 FecCD transport family EEA47_18565 PF01032 FecCD transport family EEA47_18570 PF01497 Periplasmic binding protein EEA47_18580 PF01048 Phosphorylase superfamily EEA47_18585 PF04973 Nicotinamide mononucleotide transporter EEA47_18595 PF00356 Bacterial regulatory proteins, lacI family EEA47_18600 PF00294 pfkB family carbohydrate kinase EEA47_18605 PF13407 Periplasmic binding protein domain EEA47_18610 PF02653 Branched-chain amino acid transport system / permease component EEA47_18615 PF00005 ABC transporter EEA47_18620 PF05025 RbsD / FucU transport protein family EEA47_18625 PF00990 Diguanylate cyclase, GGDEF domain EEA47_18625 PF00563 EAL domain EEA47_18670 PF04116 Fatty acid hydroxylase superfamily EEA47_18680 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EEA47_18680 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EEA47_18690 PF00072 Response regulator receiver domain EEA47_18690 PF09308 LuxQ, periplasmic EEA47_18690 PF00512 His Kinase A (phospho-acceptor) domain EEA47_18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_18695 PF00034 Cytochrome c EEA47_18695 PF03150 Di-haem cytochrome c peroxidase EEA47_18705 PF01145 SPFH domain / Band 7 family EEA47_18705 PF16200 C-terminal region of band_7 EEA47_18715 PF00881 Nitroreductase family EEA47_18720 PF00571 CBS domain EEA47_18720 PF00005 ABC transporter EEA47_18725 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_18730 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EEA47_18735 PF00732 GMC oxidoreductase EEA47_18735 PF05199 GMC oxidoreductase EEA47_18740 PF00171 Aldehyde dehydrogenase family EEA47_18745 PF00440 Bacterial regulatory proteins, tetR family EEA47_18745 PF13977 BetI-type transcriptional repressor, C-terminal EEA47_18750 PF00072 Response regulator receiver domain EEA47_18750 PF00990 Diguanylate cyclase, GGDEF domain EEA47_18760 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EEA47_18760 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EEA47_18770 PF00378 Enoyl-CoA hydratase/isomerase EEA47_18775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EEA47_18775 PF02770 Acyl-CoA dehydrogenase, middle domain EEA47_18775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EEA47_18780 PF00171 Aldehyde dehydrogenase family EEA47_18785 PF02803 Thiolase, C-terminal domain EEA47_18785 PF00108 Thiolase, N-terminal domain EEA47_18790 PF09278 MerR, DNA binding EEA47_18790 PF00376 MerR family regulatory protein EEA47_18795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EEA47_18795 PF02770 Acyl-CoA dehydrogenase, middle domain EEA47_18795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EEA47_18800 PF01039 Carboxyl transferase domain EEA47_18805 PF00378 Enoyl-CoA hydratase/isomerase EEA47_18810 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EEA47_18810 PF00364 Biotin-requiring enzyme EEA47_18810 PF00289 Biotin carboxylase, N-terminal domain EEA47_18810 PF18140 Propionyl-coenzyme A carboxylase BT domain EEA47_18810 PF02785 Biotin carboxylase C-terminal domain EEA47_18815 PF00682 HMGL-like EEA47_18825 PF00924 Mechanosensitive ion channel EEA47_18825 PF12795 Mechanosensitive ion channel porin domain EEA47_18825 PF12794 Mechanosensitive ion channel inner membrane domain 1 EEA47_18835 PF12464 Maltose acetyltransferase EEA47_18835 PF14602 Hexapeptide repeat of succinyl-transferase EEA47_18840 PF00392 Bacterial regulatory proteins, gntR family EEA47_18840 PF00155 Aminotransferase class I and II EEA47_18845 PF01654 Cytochrome bd terminal oxidase subunit I EEA47_18850 PF02322 Cytochrome bd terminal oxidase subunit II EEA47_18865 PF13419 Haloacid dehalogenase-like hydrolase EEA47_18870 PF03466 LysR substrate binding domain EEA47_18870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_18875 PF03306 Alpha-acetolactate decarboxylase EEA47_18880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EEA47_18880 PF00205 Thiamine pyrophosphate enzyme, central domain EEA47_18880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEA47_18885 PF00106 short chain dehydrogenase EEA47_18890 PF05724 Thiopurine S-methyltransferase (TPMT) EEA47_18895 PF00501 AMP-binding enzyme EEA47_18895 PF14535 AMP-binding enzyme C-terminal domain EEA47_18900 PF00005 ABC transporter EEA47_18920 PF00501 AMP-binding enzyme EEA47_18925 PF00005 ABC transporter EEA47_18925 PF12399 Branched-chain amino acid ATP-binding cassette transporter EEA47_18940 PF01012 Electron transfer flavoprotein domain EEA47_18945 PF01012 Electron transfer flavoprotein domain EEA47_18945 PF00766 Electron transfer flavoprotein FAD-binding domain EEA47_18950 PF00501 AMP-binding enzyme EEA47_18950 PF13193 AMP-binding enzyme C-terminal domain EEA47_18955 PF02378 Phosphotransferase system, EIIC EEA47_18955 PF00367 phosphotransferase system, EIIB EEA47_18960 PF02056 Family 4 glycosyl hydrolase EEA47_18960 PF11975 Family 4 glycosyl hydrolase C-terminal domain EEA47_18965 PF00392 Bacterial regulatory proteins, gntR family EEA47_18965 PF07702 UTRA domain EEA47_18970 PF03334 Na+/H+ antiporter subunit EEA47_18975 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EEA47_18980 PF01899 Na+/H+ ion antiporter subunit EEA47_18985 PF00361 Proton-conducting membrane transporter EEA47_18990 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EEA47_18995 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EEA47_18995 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EEA47_18995 PF00361 Proton-conducting membrane transporter EEA47_18995 PF13244 Domain of unknown function (DUF4040) EEA47_19005 PF00582 Universal stress protein family EEA47_19010 PF00106 short chain dehydrogenase EEA47_19015 PF03466 LysR substrate binding domain EEA47_19015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_19025 PF07690 Major Facilitator Superfamily EEA47_19060 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE EEA47_19090 PF01037 Lrp/AsnC ligand binding domain EEA47_19100 PF05947 Type VI secretion system, TssF EEA47_19110 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath EEA47_19125 PF00069 Protein kinase domain EEA47_19150 PF04717 Type VI secretion system, phage-baseplate injector EEA47_19155 PF05638 Type VI secretion system effector, Hcp EEA47_19160 PF00004 ATPase family associated with various cellular activities (AAA) EEA47_19160 PF07724 AAA domain (Cdc48 subfamily) EEA47_19160 PF17871 AAA lid domain EEA47_19160 PF10431 C-terminal, D2-small domain, of ClpB protein EEA47_19165 PF02954 Bacterial regulatory protein, Fis family EEA47_19165 PF00072 Response regulator receiver domain EEA47_19165 PF00158 Sigma-54 interaction domain EEA47_19190 PF01476 LysM domain EEA47_19190 PF01551 Peptidase family M23 EEA47_19190 PF08525 Opacity-associated protein A N-terminal motif EEA47_19195 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_19200 PF00144 Beta-lactamase EEA47_19205 PF00392 Bacterial regulatory proteins, gntR family EEA47_19225 PF02911 Formyl transferase, C-terminal domain EEA47_19225 PF01370 NAD dependent epimerase/dehydratase family EEA47_19225 PF00551 Formyl transferase EEA47_19245 PF08031 Berberine and berberine like EEA47_19245 PF01565 FAD binding domain EEA47_19255 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family EEA47_19260 PF00478 IMP dehydrogenase / GMP reductase domain EEA47_19265 PF03853 YjeF-related protein N-terminus EEA47_19265 PF01256 Carbohydrate kinase EEA47_19275 PF00072 Response regulator receiver domain EEA47_19280 PF00248 Aldo/keto reductase family EEA47_19295 PF00654 Voltage gated chloride channel EEA47_19305 PF01227 GTP cyclohydrolase I EEA47_19310 PF00994 Probable molybdopterin binding domain EEA47_19310 PF03454 MoeA C-terminal region (domain IV) EEA47_19310 PF03453 MoeA N-terminal region (domain I and II) EEA47_19315 PF00899 ThiF family EEA47_19330 PF00581 Rhodanese-like domain EEA47_19350 PF00923 Transaldolase/Fructose-6-phosphate aldolase EEA47_19355 PF00456 Transketolase, thiamine diphosphate binding domain EEA47_19355 PF02779 Transketolase, pyrimidine binding domain EEA47_19355 PF02780 Transketolase, C-terminal domain EEA47_19360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_19360 PF08447 PAS fold EEA47_19365 PF07690 Major Facilitator Superfamily EEA47_19370 PF00793 DAHP synthetase I family EEA47_19380 PF01389 OmpA-like transmembrane domain EEA47_19380 PF00691 OmpA family EEA47_19385 PF13419 Haloacid dehalogenase-like hydrolase EEA47_19390 PF00472 RF-1 domain EEA47_19395 PF00672 HAMP domain EEA47_19395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_19395 PF12729 Four helix bundle sensory module for signal transduction EEA47_19400 PF00873 AcrB/AcrD/AcrF family EEA47_19405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_19410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EEA47_19415 PF07687 Peptidase dimerisation domain EEA47_19415 PF01546 Peptidase family M20/M25/M40 EEA47_19430 PF00072 Response regulator receiver domain EEA47_19430 PF00196 Bacterial regulatory proteins, luxR family EEA47_19435 PF07730 Histidine kinase EEA47_19435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_19435 PF00672 HAMP domain EEA47_19435 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EEA47_19440 PF12838 4Fe-4S dicluster domain EEA47_19440 PF13187 4Fe-4S dicluster domain EEA47_19450 PF00384 Molybdopterin oxidoreductase EEA47_19450 PF01568 Molydopterin dinucleotide binding domain EEA47_19450 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EEA47_19455 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) EEA47_19460 PF03264 NapC/NirT cytochrome c family, N-terminal region EEA47_19470 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus EEA47_19480 PF02803 Thiolase, C-terminal domain EEA47_19480 PF00108 Thiolase, N-terminal domain EEA47_19485 PF00106 short chain dehydrogenase EEA47_19490 PF01810 LysE type translocator EEA47_19500 PF07549 SecD/SecF GG Motif EEA47_19500 PF02355 Protein export membrane protein EEA47_19505 PF13721 SecD export protein N-terminal TM region EEA47_19505 PF07549 SecD/SecF GG Motif EEA47_19505 PF02355 Protein export membrane protein EEA47_19535 PF01037 Lrp/AsnC ligand binding domain EEA47_19555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_19555 PF00529 HlyD membrane-fusion protein of T1SS EEA47_19560 PF01047 MarR family EEA47_19565 PF00072 Response regulator receiver domain EEA47_19565 PF09308 LuxQ, periplasmic EEA47_19565 PF00512 His Kinase A (phospho-acceptor) domain EEA47_19565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_19570 PF13407 Periplasmic binding protein domain EEA47_19580 PF01541 GIY-YIG catalytic domain EEA47_19585 PF04337 Protein of unknown function, DUF480 EEA47_19595 PF04363 Protein of unknown function (DUF496) EEA47_19600 PF01554 MatE EEA47_19605 PF01627 Hpt domain EEA47_19605 PF00072 Response regulator receiver domain EEA47_19605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EEA47_19605 PF00672 HAMP domain EEA47_19605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_19605 PF00512 His Kinase A (phospho-acceptor) domain EEA47_19610 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EEA47_19610 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EEA47_19625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_19625 PF03466 LysR substrate binding domain EEA47_19640 PF13520 Amino acid permease EEA47_19645 PF00392 Bacterial regulatory proteins, gntR family EEA47_19645 PF00155 Aminotransferase class I and II EEA47_19655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_19655 PF00512 His Kinase A (phospho-acceptor) domain EEA47_19655 PF00672 HAMP domain EEA47_19655 PF16527 Two-component sensor protein CpxA, periplasmic domain EEA47_19660 PF00072 Response regulator receiver domain EEA47_19660 PF00486 Transcriptional regulatory protein, C terminal EEA47_19675 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EEA47_19675 PF12833 Helix-turn-helix domain EEA47_19685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_19685 PF00529 HlyD membrane-fusion protein of T1SS EEA47_19690 PF03109 ABC1 family EEA47_19695 PF03448 MgtE intracellular N domain EEA47_19695 PF01769 Divalent cation transporter EEA47_19695 PF00571 CBS domain EEA47_19700 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin EEA47_19705 PF07969 Amidohydrolase family EEA47_19710 PF01966 HD domain EEA47_19725 PF07690 Major Facilitator Superfamily EEA47_19735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EEA47_19740 PF00255 Glutathione peroxidase EEA47_19755 PF01323 DSBA-like thioredoxin domain EEA47_19770 PF00486 Transcriptional regulatory protein, C terminal EEA47_19770 PF00072 Response regulator receiver domain EEA47_19775 PF16527 Two-component sensor protein CpxA, periplasmic domain EEA47_19775 PF00672 HAMP domain EEA47_19775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_19775 PF00512 His Kinase A (phospho-acceptor) domain EEA47_19785 PF01219 Prokaryotic diacylglycerol kinase EEA47_19790 PF08019 Phosphoethanolamine transferase EptA/EptB EEA47_19790 PF00884 Sulfatase EEA47_19795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EEA47_19810 PF01734 Patatin-like phospholipase EEA47_19815 PF02678 Pirin EEA47_19815 PF05726 Pirin C-terminal cupin domain EEA47_19820 PF00313 'Cold-shock' DNA-binding domain EEA47_19835 PF00962 Adenosine/AMP deaminase EEA47_19840 PF00462 Glutaredoxin EEA47_19840 PF08534 Redoxin EEA47_19850 PF07943 Penicillin-binding protein 5, C-terminal domain EEA47_19850 PF00768 D-alanyl-D-alanine carboxypeptidase EEA47_19860 PF02798 Glutathione S-transferase, N-terminal domain EEA47_19870 PF00251 Glycosyl hydrolases family 32 N-terminal domain EEA47_19870 PF08244 Glycosyl hydrolases family 32 C terminal EEA47_19875 PF00294 pfkB family carbohydrate kinase EEA47_19880 PF02378 Phosphotransferase system, EIIC EEA47_19880 PF00367 phosphotransferase system, EIIB EEA47_19885 PF00356 Bacterial regulatory proteins, lacI family EEA47_19890 PF02264 LamB porin EEA47_19890 PF11471 Maltoporin periplasmic N-terminal extension EEA47_19900 PF00593 TonB dependent receptor EEA47_19900 PF07715 TonB-dependent Receptor Plug Domain EEA47_19905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_19905 PF03466 LysR substrate binding domain EEA47_19915 PF04151 Bacterial pre-peptidase C-terminal domain EEA47_19915 PF05922 Peptidase inhibitor I9 EEA47_19915 PF00082 Subtilase family EEA47_19950 PF00106 short chain dehydrogenase EEA47_19955 PF03466 LysR substrate binding domain EEA47_19955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_19960 PF01497 Periplasmic binding protein EEA47_19960 PF12833 Helix-turn-helix domain EEA47_19965 PF00155 Aminotransferase class I and II EEA47_19995 PF00270 DEAD/DEAH box helicase EEA47_19995 PF00271 Helicase conserved C-terminal domain EEA47_20005 PF03466 LysR substrate binding domain EEA47_20005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20010 PF03466 LysR substrate binding domain EEA47_20010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EEA47_20025 PF00107 Zinc-binding dehydrogenase EEA47_20025 PF08240 Alcohol dehydrogenase GroES-like domain EEA47_20045 PF00392 Bacterial regulatory proteins, gntR family EEA47_20045 PF00155 Aminotransferase class I and II EEA47_20050 PF01321 Creatinase/Prolidase N-terminal domain EEA47_20050 PF00557 Metallopeptidase family M24 EEA47_20055 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EEA47_20060 PF01037 Lrp/AsnC ligand binding domain EEA47_20065 PF00171 Aldehyde dehydrogenase family EEA47_20070 PF00202 Aminotransferase class-III EEA47_20075 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) EEA47_20090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20090 PF03466 LysR substrate binding domain EEA47_20095 PF00709 Adenylosuccinate synthetase EEA47_20100 PF00710 Asparaginase, N-terminal EEA47_20100 PF17763 Glutaminase/Asparaginase C-terminal domain EEA47_20105 PF03618 Kinase/pyrophosphorylase EEA47_20110 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EEA47_20110 PF02896 PEP-utilising enzyme, TIM barrel domain EEA47_20110 PF00391 PEP-utilising enzyme, mobile domain EEA47_20120 PF00072 Response regulator receiver domain EEA47_20120 PF00196 Bacterial regulatory proteins, luxR family EEA47_20125 PF00579 tRNA synthetases class I (W and Y) EEA47_20130 PF13416 Bacterial extracellular solute-binding protein EEA47_20145 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 EEA47_20145 PF02837 Glycosyl hydrolases family 2, sugar binding domain EEA47_20145 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EEA47_20145 PF00703 Glycosyl hydrolases family 2 EEA47_20150 PF02028 BCCT, betaine/carnitine/choline family transporter EEA47_20155 PF00392 Bacterial regulatory proteins, gntR family EEA47_20155 PF07702 UTRA domain EEA47_20180 PF00005 ABC transporter EEA47_20180 PF08402 TOBE domain EEA47_20200 PF00873 AcrB/AcrD/AcrF family EEA47_20220 PF00873 AcrB/AcrD/AcrF family EEA47_20230 PF13091 PLD-like domain EEA47_20255 PF00376 MerR family regulatory protein EEA47_20255 PF09278 MerR, DNA binding EEA47_20270 PF03466 LysR substrate binding domain EEA47_20270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20280 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EEA47_20280 PF13378 Enolase C-terminal domain-like EEA47_20290 PF00679 Elongation factor G C-terminus EEA47_20290 PF14492 Elongation Factor G, domain II EEA47_20290 PF03764 Elongation factor G, domain IV EEA47_20290 PF00009 Elongation factor Tu GTP binding domain EEA47_20290 PF03144 Elongation factor Tu domain 2 EEA47_20315 PF02001 Protein of unknown function DUF134 EEA47_20325 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_20330 PF00005 ABC transporter EEA47_20330 PF00571 CBS domain EEA47_20335 PF04170 NlpE N-terminal domain EEA47_20335 PF17185 NlpE C-terminal OB domain EEA47_20340 PF06629 MltA-interacting protein MipA EEA47_20355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20355 PF03466 LysR substrate binding domain EEA47_20380 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EEA47_20380 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EEA47_20390 PF00857 Isochorismatase family EEA47_20405 PF08220 DeoR-like helix-turn-helix domain EEA47_20405 PF00455 DeoR C terminal sensor domain EEA47_20410 PF01641 SelR domain EEA47_20410 PF01625 Peptide methionine sulfoxide reductase EEA47_20415 PF03060 Nitronate monooxygenase EEA47_20420 PF13520 Amino acid permease EEA47_20425 PF05985 Ethanolamine ammonia-lyase light chain (EutC) EEA47_20430 PF06751 Ethanolamine ammonia lyase large subunit (EutB) EEA47_20435 PF12833 Helix-turn-helix domain EEA47_20440 PF00440 Bacterial regulatory proteins, tetR family EEA47_20440 PF08359 YsiA-like protein, C-terminal region EEA47_20455 PF03466 LysR substrate binding domain EEA47_20455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20460 PF01810 LysE type translocator EEA47_20470 PF00118 TCP-1/cpn60 chaperonin family EEA47_20475 PF00166 Chaperonin 10 Kd subunit EEA47_20485 PF00581 Rhodanese-like domain EEA47_20500 PF01070 FMN-dependent dehydrogenase EEA47_20520 PF00669 Bacterial flagellin N-terminal helical region EEA47_20525 PF00460 Flagella basal body rod protein EEA47_20525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_20530 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EEA47_20530 PF10135 Rod binding protein EEA47_20535 PF02119 Flagellar P-ring protein EEA47_20540 PF02107 Flagellar L-ring protein EEA47_20545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_20545 PF00460 Flagella basal body rod protein EEA47_20550 PF00460 Flagella basal body rod protein EEA47_20550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_20555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_20555 PF00460 Flagella basal body rod protein EEA47_20555 PF07559 Flagellar basal body protein FlaE EEA47_20560 PF03963 Flagellar hook capping protein - N-terminal region EEA47_20560 PF13860 FlgD Ig-like domain EEA47_20560 PF13861 FlgD Tudor-like domain EEA47_20565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEA47_20565 PF00460 Flagella basal body rod protein EEA47_20570 PF00460 Flagella basal body rod protein EEA47_20590 PF01464 Transglycosylase SLT domain EEA47_20595 PF08264 Anticodon-binding domain of tRNA EEA47_20595 PF00133 tRNA synthetases class I (I, L, M and V) EEA47_20615 PF03313 Serine dehydratase alpha chain EEA47_20615 PF03315 Serine dehydratase beta chain EEA47_20625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20625 PF03466 LysR substrate binding domain EEA47_20630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20630 PF03466 LysR substrate binding domain EEA47_20635 PF00691 OmpA family EEA47_20635 PF01389 OmpA-like transmembrane domain EEA47_20640 PF18027 Cytosolic carboxypeptidase N-terminal domain EEA47_20640 PF00246 Zinc carboxypeptidase EEA47_20645 PF01266 FAD dependent oxidoreductase EEA47_20655 PF04393 Protein of unknown function (DUF535) EEA47_20670 PF00392 Bacterial regulatory proteins, gntR family EEA47_20670 PF07702 UTRA domain EEA47_20675 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_20680 PF00005 ABC transporter EEA47_20690 PF00266 Aminotransferase class-V EEA47_20695 PF00202 Aminotransferase class-III EEA47_20700 PF13419 Haloacid dehalogenase-like hydrolase EEA47_20705 PF00356 Bacterial regulatory proteins, lacI family EEA47_20710 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEA47_20720 PF03611 PTS system sugar-specific permease component EEA47_20730 PF00082 Subtilase family EEA47_20730 PF05922 Peptidase inhibitor I9 EEA47_20735 PF00657 GDSL-like Lipase/Acylhydrolase EEA47_20740 PF00440 Bacterial regulatory proteins, tetR family EEA47_20750 PF02321 Outer membrane efflux protein EEA47_20755 PF02687 FtsX-like permease family EEA47_20755 PF12704 MacB-like periplasmic core domain EEA47_20755 PF00005 ABC transporter EEA47_20760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_20765 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EEA47_20770 PF00194 Eukaryotic-type carbonic anhydrase EEA47_20775 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) EEA47_20790 PF13419 Haloacid dehalogenase-like hydrolase EEA47_20795 PF03466 LysR substrate binding domain EEA47_20795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_20830 PF12464 Maltose acetyltransferase EEA47_20830 PF14602 Hexapeptide repeat of succinyl-transferase EEA47_20835 PF02566 OsmC-like protein EEA47_20840 PF01625 Peptide methionine sulfoxide reductase EEA47_20840 PF01641 SelR domain EEA47_20855 PF04244 Deoxyribodipyrimidine photo-lyase-related protein EEA47_20860 PF00875 DNA photolyase EEA47_20860 PF03441 FAD binding domain of DNA photolyase EEA47_20865 PF00990 Diguanylate cyclase, GGDEF domain EEA47_20880 PF03707 Bacterial signalling protein N terminal repeat EEA47_20880 PF00563 EAL domain EEA47_20880 PF00990 Diguanylate cyclase, GGDEF domain EEA47_20895 PF07670 Nucleoside recognition EEA47_20895 PF07662 Na+ dependent nucleoside transporter C-terminus EEA47_20895 PF01773 Na+ dependent nucleoside transporter N-terminus EEA47_20915 PF01212 Beta-eliminating lyase EEA47_20920 PF03116 NQR2, RnfD, RnfE family EEA47_20925 PF01654 Cytochrome bd terminal oxidase subunit I EEA47_20930 PF02322 Cytochrome bd terminal oxidase subunit II EEA47_20945 PF01266 FAD dependent oxidoreductase EEA47_20965 PF05525 Branched-chain amino acid transport protein EEA47_20970 PF00990 Diguanylate cyclase, GGDEF domain EEA47_20975 PF00072 Response regulator receiver domain EEA47_20975 PF00158 Sigma-54 interaction domain EEA47_20975 PF02954 Bacterial regulatory protein, Fis family EEA47_20980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_20980 PF00512 His Kinase A (phospho-acceptor) domain EEA47_20980 PF02743 Cache domain EEA47_20985 PF00232 Glycosyl hydrolase family 1 EEA47_21000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_21000 PF03466 LysR substrate binding domain EEA47_21010 PF12706 Beta-lactamase superfamily domain EEA47_21025 PF18030 RimK PreATP-grasp domain EEA47_21025 PF08443 RimK-like ATP-grasp domain EEA47_21030 PF08443 RimK-like ATP-grasp domain EEA47_21030 PF18030 RimK PreATP-grasp domain EEA47_21035 PF00753 Metallo-beta-lactamase superfamily EEA47_21040 PF17944 Arginine decarboxylase C-terminal helical extension EEA47_21040 PF17810 Arginine decarboxylase helical bundle domain EEA47_21040 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EEA47_21045 PF00491 Arginase family EEA47_21050 PF07690 Major Facilitator Superfamily EEA47_21055 PF00326 Prolyl oligopeptidase family EEA47_21055 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EEA47_21070 PF00950 ABC 3 transport family EEA47_21075 PF00005 ABC transporter EEA47_21080 PF01297 Zinc-uptake complex component A periplasmic EEA47_21125 PF02472 Biopolymer transport protein ExbD/TolR EEA47_21130 PF01618 MotA/TolQ/ExbB proton channel family EEA47_21135 PF01618 MotA/TolQ/ExbB proton channel family EEA47_21145 PF00593 TonB dependent receptor EEA47_21145 PF07715 TonB-dependent Receptor Plug Domain EEA47_21150 PF00512 His Kinase A (phospho-acceptor) domain EEA47_21150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_21150 PF00672 HAMP domain EEA47_21150 PF16750 Sensor domain of 2-component histidine kinase EEA47_21155 PF00072 Response regulator receiver domain EEA47_21155 PF00486 Transcriptional regulatory protein, C terminal EEA47_21160 PF03009 Glycerophosphoryl diester phosphodiesterase family EEA47_21170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEA47_21170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEA47_21175 PF10928 Protein of unknown function (DUF2810) EEA47_21235 PF04013 Putative SAM-dependent RNA methyltransferase EEA47_21240 PF01523 Putative modulator of DNA gyrase EEA47_21245 PF01523 Putative modulator of DNA gyrase EEA47_21250 PF08543 Phosphomethylpyrimidine kinase EEA47_21255 PF00005 ABC transporter EEA47_21260 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_21265 PF09084 NMT1/THI5 like EEA47_21270 PF03070 TENA/THI-4/PQQC family EEA47_21275 PF02110 Hydroxyethylthiazole kinase family EEA47_21280 PF02581 Thiamine monophosphate synthase EEA47_21290 PF00384 Molybdopterin oxidoreductase EEA47_21290 PF18364 Molybdopterin oxidoreductase N-terminal domain EEA47_21290 PF01568 Molydopterin dinucleotide binding domain EEA47_21295 PF03264 NapC/NirT cytochrome c family, N-terminal region EEA47_21300 PF13302 Acetyltransferase (GNAT) domain EEA47_21320 PF00583 Acetyltransferase (GNAT) family EEA47_21340 PF00155 Aminotransferase class I and II EEA47_21340 PF00392 Bacterial regulatory proteins, gntR family EEA47_21345 PF02595 Glycerate kinase family EEA47_21350 PF02447 GntP family permease EEA47_21355 PF05651 Putative sugar diacid recognition EEA47_21355 PF13556 PucR C-terminal helix-turn-helix domain EEA47_21355 PF17853 GGDEF-like domain EEA47_21390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEA47_21395 PF12706 Beta-lactamase superfamily domain EEA47_21405 PF07690 Major Facilitator Superfamily EEA47_21410 PF13533 Biotin-lipoyl like EEA47_21415 PF03922 OmpW family EEA47_21420 PF13599 Pentapeptide repeats (9 copies) EEA47_21435 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EEA47_21435 PF18416 N-acetylglucosamine binding protein domain 2 EEA47_21440 PF01037 Lrp/AsnC ligand binding domain EEA47_21445 PF01810 LysE type translocator EEA47_21450 PF08021 Siderophore-interacting FAD-binding domain EEA47_21450 PF04954 Siderophore-interacting protein EEA47_21455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_21455 PF03466 LysR substrate binding domain EEA47_21460 PF00797 N-acetyltransferase EEA47_21465 PF00107 Zinc-binding dehydrogenase EEA47_21465 PF08240 Alcohol dehydrogenase GroES-like domain EEA47_21470 PF00756 Putative esterase EEA47_21480 PF17152 Periplasmic sensor domain EEA47_21480 PF00990 Diguanylate cyclase, GGDEF domain EEA47_21495 PF03466 LysR substrate binding domain EEA47_21495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_21510 PF00849 RNA pseudouridylate synthase EEA47_21515 PF01554 MatE EEA47_21520 PF03707 Bacterial signalling protein N terminal repeat EEA47_21520 PF00990 Diguanylate cyclase, GGDEF domain EEA47_21520 PF00563 EAL domain EEA47_21530 PF06865 Pyrimidine/purine nucleoside phosphorylase EEA47_21540 PF08329 Chitinase A, N-terminal domain EEA47_21540 PF00704 Glycosyl hydrolases family 18 EEA47_21545 PF12697 Alpha/beta hydrolase family EEA47_21560 PF03600 Citrate transporter EEA47_21570 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EEA47_21580 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EEA47_21580 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EEA47_21585 PF02805 Metal binding domain of Ada EEA47_21585 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EEA47_21585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EEA47_21585 PF12833 Helix-turn-helix domain EEA47_21595 PF07681 DoxX EEA47_21600 PF17954 Quercetinase C-terminal cupin domain EEA47_21600 PF02678 Pirin EEA47_21605 PF03466 LysR substrate binding domain EEA47_21605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_21620 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EEA47_21630 PF03616 Sodium/glutamate symporter EEA47_21635 PF00155 Aminotransferase class I and II EEA47_21635 PF00392 Bacterial regulatory proteins, gntR family EEA47_21640 PF00005 ABC transporter EEA47_21650 PF03616 Sodium/glutamate symporter EEA47_21670 PF17200 Single Cache domain 2 EEA47_21670 PF00672 HAMP domain EEA47_21670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_21675 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EEA47_21685 PF00072 Response regulator receiver domain EEA47_21685 PF04397 LytTr DNA-binding domain EEA47_21690 PF07694 5TMR of 5TMR-LYT EEA47_21690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_21690 PF06580 Histidine kinase EEA47_21690 PF13492 GAF domain EEA47_21710 PF00005 ABC transporter EEA47_21720 PF01098 Cell cycle protein EEA47_21725 PF01709 Transcriptional regulator EEA47_21735 PF17149 Periplasmic sensor domain found in signal transduction proteins EEA47_21735 PF00072 Response regulator receiver domain EEA47_21735 PF01627 Hpt domain EEA47_21735 PF00512 His Kinase A (phospho-acceptor) domain EEA47_21735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_21735 PF00672 HAMP domain EEA47_21745 PF08719 Domain of unknown function (DUF1768) EEA47_21745 PF00925 GTP cyclohydrolase II EEA47_21755 PF00005 ABC transporter EEA47_21755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_21760 PF00005 ABC transporter EEA47_21760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_21775 PF13614 AAA domain EEA47_21775 PF18607 ParA helix turn helix domain EEA47_21780 PF08775 ParB family EEA47_21780 PF02195 ParB-like nuclease domain EEA47_21785 PF05127 Helicase EEA47_21785 PF13718 GNAT acetyltransferase 2 EEA47_21795 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_21800 PF03466 LysR substrate binding domain EEA47_21800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_21810 PF00267 Gram-negative porin EEA47_21815 PF00367 phosphotransferase system, EIIB EEA47_21815 PF02378 Phosphotransferase system, EIIC EEA47_21820 PF01380 SIS domain EEA47_21830 PF01380 SIS domain EEA47_21830 PF01418 Helix-turn-helix domain, rpiR family EEA47_21835 PF00246 Zinc carboxypeptidase EEA47_21840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_21845 PF03358 NADPH-dependent FMN reductase EEA47_21855 PF00005 ABC transporter EEA47_21855 PF03412 Peptidase C39 family EEA47_21855 PF00664 ABC transporter transmembrane region EEA47_21870 PF00529 HlyD membrane-fusion protein of T1SS EEA47_21875 PF00072 Response regulator receiver domain EEA47_21875 PF02954 Bacterial regulatory protein, Fis family EEA47_21875 PF00158 Sigma-54 interaction domain EEA47_21880 PF02743 Cache domain EEA47_21880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_21880 PF00512 His Kinase A (phospho-acceptor) domain EEA47_21885 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EEA47_21885 PF01243 Pyridoxamine 5'-phosphate oxidase EEA47_21895 PF12833 Helix-turn-helix domain EEA47_21900 PF00171 Aldehyde dehydrogenase family EEA47_21900 PF01619 Proline dehydrogenase EEA47_21900 PF14850 DNA-binding domain of Proline dehydrogenase EEA47_21900 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EEA47_21910 PF00474 Sodium:solute symporter family EEA47_21940 PF01037 Lrp/AsnC ligand binding domain EEA47_21960 PF00271 Helicase conserved C-terminal domain EEA47_21960 PF00270 DEAD/DEAH box helicase EEA47_21965 PF03473 MOSC domain EEA47_21965 PF03475 3-alpha domain EEA47_21985 PF08281 Sigma-70, region 4 EEA47_21985 PF04542 Sigma-70 region 2 EEA47_21990 PF12833 Helix-turn-helix domain EEA47_21990 PF01965 DJ-1/PfpI family EEA47_22000 PF03466 LysR substrate binding domain EEA47_22000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_22025 PF13192 Thioredoxin domain EEA47_22025 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_22030 PF10417 C-terminal domain of 1-Cys peroxiredoxin EEA47_22030 PF00578 AhpC/TSA family EEA47_22035 PF01047 MarR family EEA47_22040 PF02566 OsmC-like protein EEA47_22075 PF02687 FtsX-like permease family EEA47_22075 PF12704 MacB-like periplasmic core domain EEA47_22080 PF00005 ABC transporter EEA47_22100 PF01136 Peptidase family U32 EEA47_22110 PF02378 Phosphotransferase system, EIIC EEA47_22110 PF00367 phosphotransferase system, EIIB EEA47_22120 PF00486 Transcriptional regulatory protein, C terminal EEA47_22120 PF00072 Response regulator receiver domain EEA47_22125 PF08521 Two-component sensor kinase N-terminal EEA47_22125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_22125 PF00512 His Kinase A (phospho-acceptor) domain EEA47_22130 PF01547 Bacterial extracellular solute-binding protein EEA47_22135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EEA47_22135 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EEA47_22140 PF04183 IucA / IucC family EEA47_22140 PF06276 Ferric iron reductase FhuF-like transporter EEA47_22145 PF07690 Major Facilitator Superfamily EEA47_22150 PF06276 Ferric iron reductase FhuF-like transporter EEA47_22150 PF04183 IucA / IucC family EEA47_22155 PF02655 ATP-grasp domain EEA47_22155 PF00206 Lyase EEA47_22160 PF07715 TonB-dependent Receptor Plug Domain EEA47_22160 PF00593 TonB dependent receptor EEA47_22165 PF00593 TonB dependent receptor EEA47_22165 PF07715 TonB-dependent Receptor Plug Domain EEA47_22165 PF07660 Secretin and TonB N terminus short domain EEA47_22170 PF01497 Periplasmic binding protein EEA47_22175 PF01032 FecCD transport family EEA47_22180 PF01032 FecCD transport family EEA47_22185 PF00005 ABC transporter EEA47_22190 PF17200 Single Cache domain 2 EEA47_22190 PF00672 HAMP domain EEA47_22190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_22195 PF00675 Insulinase (Peptidase family M16) EEA47_22195 PF05193 Peptidase M16 inactive domain EEA47_22205 PF01551 Peptidase family M23 EEA47_22205 PF04225 Opacity-associated protein A LysM-like domain EEA47_22220 PF07690 Major Facilitator Superfamily EEA47_22225 PF00239 Resolvase, N terminal domain EEA47_22225 PF02796 Helix-turn-helix domain of resolvase EEA47_22230 PF00356 Bacterial regulatory proteins, lacI family EEA47_22235 PF00474 Sodium:solute symporter family EEA47_22250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EEA47_22250 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EEA47_22260 PF03480 Bacterial extracellular solute-binding protein, family 7 EEA47_22265 PF00356 Bacterial regulatory proteins, lacI family EEA47_22270 PF03328 HpcH/HpaI aldolase/citrate lyase family EEA47_22275 PF00815 Histidinol dehydrogenase EEA47_22290 PF12697 Alpha/beta hydrolase family EEA47_22305 PF07690 Major Facilitator Superfamily EEA47_22310 PF00474 Sodium:solute symporter family EEA47_22315 PF03313 Serine dehydratase alpha chain EEA47_22315 PF03315 Serine dehydratase beta chain EEA47_22320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EEA47_22320 PF00128 Alpha amylase, catalytic domain EEA47_22325 PF02264 LamB porin EEA47_22340 PF16657 Maltogenic Amylase, C-terminal domain EEA47_22340 PF00128 Alpha amylase, catalytic domain EEA47_22340 PF02903 Alpha amylase, N-terminal ig-like domain EEA47_22345 PF04231 Endonuclease I EEA47_22350 PF17967 Pullulanase N2 domain EEA47_22350 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EEA47_22350 PF11852 Domain of unknown function (DUF3372) EEA47_22350 PF18494 Pullulanase Ins domain EEA47_22350 PF03714 Bacterial pullanase-associated domain EEA47_22365 PF08543 Phosphomethylpyrimidine kinase EEA47_22370 PF00375 Sodium:dicarboxylate symporter family EEA47_22375 PF03193 RsgA GTPase EEA47_22380 PF02378 Phosphotransferase system, EIIC EEA47_22380 PF00367 phosphotransferase system, EIIB EEA47_22385 PF02630 SCO1/SenC EEA47_22400 PF00196 Bacterial regulatory proteins, luxR family EEA47_22400 PF17874 MalT-like TPR region EEA47_22405 PF00343 Carbohydrate phosphorylase EEA47_22410 PF02446 4-alpha-glucanotransferase EEA47_22415 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EEA47_22415 PF02806 Alpha amylase, C-terminal all-beta domain EEA47_22415 PF00128 Alpha amylase, catalytic domain EEA47_22420 PF00912 Transglycosylase EEA47_22425 PF00128 Alpha amylase, catalytic domain EEA47_22440 PF07670 Nucleoside recognition EEA47_22445 PF07670 Nucleoside recognition EEA47_22450 PF07687 Peptidase dimerisation domain EEA47_22450 PF01546 Peptidase family M20/M25/M40 EEA47_22455 PF06803 Protein of unknown function (DUF1232) EEA47_22460 PF00375 Sodium:dicarboxylate symporter family EEA47_22470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_22470 PF03466 LysR substrate binding domain EEA47_22475 PF08803 Putative mono-oxygenase ydhR EEA47_22485 PF13807 G-rich domain on putative tyrosine kinase EEA47_22485 PF13614 AAA domain EEA47_22485 PF02706 Chain length determinant protein EEA47_22490 PF01451 Low molecular weight phosphotyrosine protein phosphatase EEA47_22495 PF10531 SLBB domain EEA47_22495 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EEA47_22495 PF02563 Polysaccharide biosynthesis/export protein EEA47_22505 PF00881 Nitroreductase family EEA47_22510 PF01914 MarC family integral membrane protein EEA47_22515 PF01734 Patatin-like phospholipase EEA47_22520 PF18416 N-acetylglucosamine binding protein domain 2 EEA47_22520 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EEA47_22525 PF02469 Fasciclin domain EEA47_22530 PF03441 FAD binding domain of DNA photolyase EEA47_22530 PF00875 DNA photolyase EEA47_22540 PF00581 Rhodanese-like domain EEA47_22540 PF17773 UPF0176 acylphosphatase like domain EEA47_22545 PF00561 alpha/beta hydrolase fold EEA47_22550 PF07943 Penicillin-binding protein 5, C-terminal domain EEA47_22550 PF00768 D-alanyl-D-alanine carboxypeptidase EEA47_22555 PF00128 Alpha amylase, catalytic domain EEA47_22555 PF00686 Starch binding domain EEA47_22560 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term EEA47_22560 PF12833 Helix-turn-helix domain EEA47_22565 PF00881 Nitroreductase family EEA47_22575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_22575 PF03466 LysR substrate binding domain EEA47_22580 PF09905 DNA-binding protein VF530 EEA47_22590 PF00175 Oxidoreductase NAD-binding domain EEA47_22590 PF00970 Oxidoreductase FAD-binding domain EEA47_22600 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EEA47_22605 PF01594 AI-2E family transporter EEA47_22615 PF13533 Biotin-lipoyl like EEA47_22640 PF00892 EamA-like transporter family EEA47_22645 PF03466 LysR substrate binding domain EEA47_22645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_22650 PF07690 Major Facilitator Superfamily EEA47_22660 PF00583 Acetyltransferase (GNAT) family EEA47_22670 PF00486 Transcriptional regulatory protein, C terminal EEA47_22670 PF00072 Response regulator receiver domain EEA47_22675 PF00512 His Kinase A (phospho-acceptor) domain EEA47_22675 PF00672 HAMP domain EEA47_22675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_22690 PF00923 Transaldolase/Fructose-6-phosphate aldolase EEA47_22695 PF04055 Radical SAM superfamily EEA47_22700 PF01228 Glycine radical EEA47_22700 PF02901 Pyruvate formate lyase-like EEA47_22720 PF08000 Bacterial PH domain EEA47_22735 PF00691 OmpA family EEA47_22735 PF13677 Membrane MotB of proton-channel complex MotA/MotB EEA47_22740 PF01618 MotA/TolQ/ExbB proton channel family EEA47_22745 PF04542 Sigma-70 region 2 EEA47_22745 PF04545 Sigma-70, region 4 EEA47_22750 PF03748 Flagellar basal body-associated protein FliL EEA47_22765 PF02561 Flagellar protein FliS EEA47_22770 PF02465 Flagellar hook-associated protein 2 N-terminus EEA47_22770 PF07196 Flagellin hook IN motif EEA47_22770 PF07195 Flagellar hook-associated protein 2 C-terminus EEA47_22780 PF00700 Bacterial flagellin C-terminal helical region EEA47_22780 PF00669 Bacterial flagellin N-terminal helical region EEA47_22790 PF00771 FHIPEP family EEA47_22795 PF01312 FlhB HrpN YscU SpaS Family EEA47_22800 PF01311 Bacterial export proteins, family 1 EEA47_22805 PF01313 Bacterial export proteins, family 3 EEA47_22810 PF00813 FliP family EEA47_22815 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EEA47_22830 PF00158 Sigma-54 interaction domain EEA47_22830 PF02954 Bacterial regulatory protein, Fis family EEA47_22830 PF00072 Response regulator receiver domain EEA47_22835 PF02049 Flagellar hook-basal body complex protein FliE EEA47_22840 PF08345 Flagellar M-ring protein C-terminal EEA47_22840 PF01514 Secretory protein of YscJ/FliF family EEA47_22845 PF01706 FliG C-terminal domain EEA47_22845 PF14842 FliG N-terminal domain EEA47_22845 PF14841 FliG middle domain EEA47_22855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEA47_22855 PF18269 T3SS EscN ATPase C-terminal domain EEA47_22870 PF03466 LysR substrate binding domain EEA47_22870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_22905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEA47_22910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_22910 PF03466 LysR substrate binding domain EEA47_22930 PF00072 Response regulator receiver domain EEA47_22930 PF00486 Transcriptional regulatory protein, C terminal EEA47_22935 PF00512 His Kinase A (phospho-acceptor) domain EEA47_22935 PF13426 PAS domain EEA47_22935 PF00072 Response regulator receiver domain EEA47_22935 PF08448 PAS fold EEA47_22935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_22940 PF00080 Copper/zinc superoxide dismutase (SODC) EEA47_22950 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEA47_22955 PF00563 EAL domain EEA47_22955 PF00990 Diguanylate cyclase, GGDEF domain EEA47_22955 PF03707 Bacterial signalling protein N terminal repeat EEA47_22955 PF13188 PAS domain EEA47_22960 PF00155 Aminotransferase class I and II EEA47_22965 PF00107 Zinc-binding dehydrogenase EEA47_22965 PF08240 Alcohol dehydrogenase GroES-like domain EEA47_22995 PF00194 Eukaryotic-type carbonic anhydrase EEA47_23000 PF00924 Mechanosensitive ion channel EEA47_23010 PF01070 FMN-dependent dehydrogenase EEA47_23015 PF02652 L-lactate permease EEA47_23020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_23020 PF03466 LysR substrate binding domain EEA47_23025 PF00326 Prolyl oligopeptidase family EEA47_23025 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EEA47_23030 PF00005 ABC transporter EEA47_23030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_23040 PF05362 Lon protease (S16) C-terminal proteolytic domain EEA47_23040 PF13654 AAA domain EEA47_23045 PF17200 Single Cache domain 2 EEA47_23045 PF00672 HAMP domain EEA47_23045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_23050 PF13609 Gram-negative porin EEA47_23055 PF07238 PilZ domain EEA47_23055 PF12945 Flagellar protein YcgR EEA47_23070 PF00583 Acetyltransferase (GNAT) family EEA47_23075 PF12800 4Fe-4S binding domain EEA47_23075 PF12838 4Fe-4S dicluster domain EEA47_23080 PF12801 4Fe-4S binding domain EEA47_23080 PF13237 4Fe-4S dicluster domain EEA47_23100 PF00005 ABC transporter EEA47_23100 PF12558 ATP-binding cassette cobalt transporter EEA47_23105 PF07155 ECF-type riboflavin transporter, S component EEA47_23110 PF00529 HlyD membrane-fusion protein of T1SS EEA47_23110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_23115 PF11742 Protein of unknown function (DUF3302) EEA47_23120 PF00990 Diguanylate cyclase, GGDEF domain EEA47_23135 PF01048 Phosphorylase superfamily EEA47_23140 PF08349 Protein of unknown function (DUF1722) EEA47_23145 PF13411 MerR HTH family regulatory protein EEA47_23150 PF03441 FAD binding domain of DNA photolyase EEA47_23150 PF00875 DNA photolyase EEA47_23155 PF01476 LysM domain EEA47_23155 PF17969 L,D-transpeptidase C-terminal domain EEA47_23155 PF03734 L,D-transpeptidase catalytic domain EEA47_23165 PF00270 DEAD/DEAH box helicase EEA47_23165 PF00271 Helicase conserved C-terminal domain EEA47_23170 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EEA47_23170 PF00326 Prolyl oligopeptidase family EEA47_23175 PF07715 TonB-dependent Receptor Plug Domain EEA47_23175 PF00593 TonB dependent receptor EEA47_23195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_23195 PF00672 HAMP domain EEA47_23200 PF12849 PBP superfamily domain EEA47_23205 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_23210 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_23215 PF00005 ABC transporter EEA47_23230 PF13519 von Willebrand factor type A domain EEA47_23230 PF07584 Aerotolerance regulator N-terminal EEA47_23235 PF13519 von Willebrand factor type A domain EEA47_23235 PF07584 Aerotolerance regulator N-terminal EEA47_23245 PF01882 Protein of unknown function DUF58 EEA47_23250 PF07726 ATPase family associated with various cellular activities (AAA) EEA47_23250 PF17863 AAA lid domain EEA47_23255 PF02743 Cache domain EEA47_23255 PF00672 HAMP domain EEA47_23255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_23265 PF00196 Bacterial regulatory proteins, luxR family EEA47_23270 PF00196 Bacterial regulatory proteins, luxR family EEA47_23280 PF00664 ABC transporter transmembrane region EEA47_23280 PF00005 ABC transporter EEA47_23285 PF00529 HlyD membrane-fusion protein of T1SS EEA47_23295 PF01032 FecCD transport family EEA47_23300 PF01497 Periplasmic binding protein EEA47_23305 PF00005 ABC transporter EEA47_23310 PF00593 TonB dependent receptor EEA47_23310 PF07715 TonB-dependent Receptor Plug Domain EEA47_23315 PF00664 ABC transporter transmembrane region EEA47_23315 PF00005 ABC transporter EEA47_23320 PF13493 Domain of unknown function (DUF4118) EEA47_23320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_23320 PF00512 His Kinase A (phospho-acceptor) domain EEA47_23320 PF02702 Osmosensitive K+ channel His kinase sensor domain EEA47_23325 PF00486 Transcriptional regulatory protein, C terminal EEA47_23325 PF00072 Response regulator receiver domain EEA47_23330 PF02080 TrkA-C domain EEA47_23330 PF02254 TrkA-N domain EEA47_23335 PF02386 Cation transport protein EEA47_23340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_23340 PF03466 LysR substrate binding domain EEA47_23345 PF02028 BCCT, betaine/carnitine/choline family transporter EEA47_23350 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EEA47_23350 PF00355 Rieske [2Fe-2S] domain EEA47_23355 PF00171 Aldehyde dehydrogenase family EEA47_23360 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_23360 PF18113 Rubredoxin binding C-terminal domain EEA47_23365 PF01266 FAD dependent oxidoreductase EEA47_23375 PF00127 Copper binding proteins, plastocyanin/azurin family EEA47_23380 PF13419 Haloacid dehalogenase-like hydrolase EEA47_23390 PF00158 Sigma-54 interaction domain EEA47_23390 PF01590 GAF domain EEA47_23395 PF00753 Metallo-beta-lactamase superfamily EEA47_23395 PF00301 Rubredoxin EEA47_23395 PF00258 Flavodoxin EEA47_23400 PF18113 Rubredoxin binding C-terminal domain EEA47_23400 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEA47_23410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EEA47_23410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EEA47_23415 PF00199 Catalase EEA47_23415 PF06628 Catalase-related immune-responsive EEA47_23420 PF13417 Glutathione S-transferase, N-terminal domain EEA47_23425 PF00107 Zinc-binding dehydrogenase EEA47_23425 PF16884 N-terminal domain of oxidoreductase EEA47_23430 PF00440 Bacterial regulatory proteins, tetR family EEA47_23430 PF16925 Tetracyclin repressor-like, C-terminal domain EEA47_23435 PF04266 ASCH domain EEA47_23465 PF13439 Glycosyltransferase Family 4 EEA47_23465 PF00534 Glycosyl transferases group 1 EEA47_23475 PF13614 AAA domain EEA47_23475 PF13807 G-rich domain on putative tyrosine kinase EEA47_23475 PF02706 Chain length determinant protein EEA47_23490 PF02397 Bacterial sugar transferase EEA47_23495 PF00005 ABC transporter EEA47_23495 PF08402 TOBE domain EEA47_23500 PF01547 Bacterial extracellular solute-binding protein EEA47_23505 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_23505 PF14785 Maltose transport system permease protein MalF P2 domain EEA47_23510 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_23540 PF05661 Protein of unknown function (DUF808) EEA47_23545 PF01979 Amidohydrolase family EEA47_23555 PF01679 Proteolipid membrane potential modulator EEA47_23560 PF03476 MOSC N-terminal beta barrel domain EEA47_23560 PF00111 2Fe-2S iron-sulfur cluster binding domain EEA47_23560 PF00111 2Fe-2S iron-sulfur cluster binding domain EEA47_23560 PF03473 MOSC domain EEA47_23560 PF03476 MOSC N-terminal beta barrel domain EEA47_23560 PF03473 MOSC domain EEA47_23565 PF02540 NAD synthase EEA47_23570 PF01467 Cytidylyltransferase-like EEA47_23615 PF00005 ABC transporter EEA47_23620 PF01032 FecCD transport family EEA47_23630 PF02472 Biopolymer transport protein ExbD/TolR EEA47_23635 PF01618 MotA/TolQ/ExbB proton channel family EEA47_23640 PF03544 Gram-negative bacterial TonB protein C-terminal EEA47_23645 PF04055 Radical SAM superfamily EEA47_23650 PF06228 Haem utilisation ChuX/HutX EEA47_23655 PF01243 Pyridoxamine 5'-phosphate oxidase EEA47_23665 PF01584 CheW-like domain EEA47_23665 PF00072 Response regulator receiver domain EEA47_23675 PF01554 MatE EEA47_23680 PF00005 ABC transporter EEA47_23680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_23685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEA47_23685 PF00005 ABC transporter EEA47_23690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEA47_23695 PF00528 Binding-protein-dependent transport system inner membrane component EEA47_23700 PF00455 DeoR C terminal sensor domain EEA47_23700 PF08220 DeoR-like helix-turn-helix domain EEA47_23705 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EEA47_23705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EEA47_23710 PF17042 Nucleotide-binding C-terminal domain EEA47_23710 PF07005 Sugar-binding N-terminal domain EEA47_23715 PF00596 Class II Aldolase and Adducin N-terminal domain EEA47_23720 PF01261 Xylose isomerase-like TIM barrel EEA47_23725 PF01370 NAD dependent epimerase/dehydratase family EEA47_23730 PF02447 GntP family permease EEA47_23735 PF02583 Metal-sensitive transcriptional repressor EEA47_23740 PF03824 High-affinity nickel-transport protein EEA47_23750 PF00672 HAMP domain EEA47_23750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_23750 PF02743 Cache domain EEA47_23755 PF03466 LysR substrate binding domain EEA47_23755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_23760 PF01039 Carboxyl transferase domain EEA47_23760 PF17848 Acetyl-coA carboxylase zinc finger domain EEA47_23770 PF01752 Collagenase EEA47_23770 PF08453 Peptidase family M9 N-terminal EEA47_23770 PF04151 Bacterial pre-peptidase C-terminal domain EEA47_23780 PF02627 Carboxymuconolactone decarboxylase family EEA47_23785 PF13411 MerR HTH family regulatory protein EEA47_23790 PF00128 Alpha amylase, catalytic domain EEA47_23805 PF00999 Sodium/hydrogen exchanger family EEA47_23805 PF02254 TrkA-N domain EEA47_23810 PF02525 Flavodoxin-like fold EEA47_23815 PF00582 Universal stress protein family EEA47_23820 PF16326 ABC transporter C-terminal domain EEA47_23820 PF00005 ABC transporter EEA47_23820 PF12848 ABC transporter EEA47_23825 PF00326 Prolyl oligopeptidase family EEA47_23825 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EEA47_23835 PF13533 Biotin-lipoyl like EEA47_23840 PF00873 AcrB/AcrD/AcrF family EEA47_23845 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EEA47_23855 PF13302 Acetyltransferase (GNAT) domain EEA47_23865 PF17151 Periplasmic sensor domain EEA47_23865 PF00990 Diguanylate cyclase, GGDEF domain EEA47_23880 PF00873 AcrB/AcrD/AcrF family EEA47_23885 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEA47_23900 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EEA47_23900 PF01568 Molydopterin dinucleotide binding domain EEA47_23900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EEA47_23900 PF00384 Molybdopterin oxidoreductase EEA47_23900 PF12838 4Fe-4S dicluster domain EEA47_23915 PF00005 ABC transporter EEA47_23925 PF02685 Glucokinase EEA47_23925 PF01418 Helix-turn-helix domain, rpiR family EEA47_23925 PF01380 SIS domain EEA47_23935 PF07969 Amidohydrolase family EEA47_23945 PF00474 Sodium:solute symporter family EEA47_23950 PF00294 pfkB family carbohydrate kinase EEA47_23955 PF01081 KDPG and KHG aldolase EEA47_23965 PF00728 Glycosyl hydrolase family 20, catalytic domain EEA47_23965 PF02838 Glycosyl hydrolase family 20, domain 2 EEA47_23970 PF10282 Lactonase, 7-bladed beta-propeller EEA47_23975 PF01042 Endoribonuclease L-PSP EEA47_23980 PF02567 Phenazine biosynthesis-like protein EEA47_23985 PF01161 Phosphatidylethanolamine-binding protein EEA47_23995 PF01758 Sodium Bile acid symporter family EEA47_24010 PF01638 HxlR-like helix-turn-helix EEA47_24030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_24030 PF03466 LysR substrate binding domain EEA47_24035 PF00248 Aldo/keto reductase family EEA47_24040 PF03928 Haem-degrading EEA47_24060 PF03222 Tryptophan/tyrosine permease family EEA47_24070 PF00672 HAMP domain EEA47_24070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_24070 PF02743 Cache domain EEA47_24075 PF07670 Nucleoside recognition EEA47_24100 PF01551 Peptidase family M23 EEA47_24100 PF08525 Opacity-associated protein A N-terminal motif EEA47_24100 PF01476 LysM domain EEA47_24105 PF08448 PAS fold EEA47_24105 PF08447 PAS fold EEA47_24105 PF00990 Diguanylate cyclase, GGDEF domain EEA47_24105 PF00563 EAL domain EEA47_24110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_24110 PF03466 LysR substrate binding domain EEA47_24115 PF07690 Major Facilitator Superfamily EEA47_24130 PF00462 Glutaredoxin EEA47_24135 PF00892 EamA-like transporter family EEA47_24150 PF01557 Fumarylacetoacetate (FAA) hydrolase family EEA47_24170 PF01810 LysE type translocator EEA47_24180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEA47_24180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEA47_24180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEA47_24180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEA47_24185 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EEA47_24185 PF02790 Cytochrome C oxidase subunit II, transmembrane domain EEA47_24190 PF00115 Cytochrome C and Quinol oxidase polypeptide I EEA47_24195 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 EEA47_24200 PF00510 Cytochrome c oxidase subunit III EEA47_24220 PF02628 Cytochrome oxidase assembly protein EEA47_24225 PF01040 UbiA prenyltransferase family EEA47_24230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEA47_24230 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EEA47_24240 PF05736 OprF membrane domain EEA47_24240 PF00691 OmpA family EEA47_24260 PF00313 'Cold-shock' DNA-binding domain EEA47_24265 PF03889 Alternative ribosome-rescue factor A EEA47_24270 PF00990 Diguanylate cyclase, GGDEF domain EEA47_24275 PF04545 Sigma-70, region 4 EEA47_24275 PF04539 Sigma-70 region 3 EEA47_24275 PF04542 Sigma-70 region 2 EEA47_24275 PF00140 Sigma-70 factor, region 1.2 EEA47_24285 PF00005 ABC transporter EEA47_24285 PF00664 ABC transporter transmembrane region EEA47_24290 PF00664 ABC transporter transmembrane region EEA47_24290 PF00005 ABC transporter EEA47_24295 PF02321 Outer membrane efflux protein EEA47_24300 PF00072 Response regulator receiver domain EEA47_24300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEA47_24305 PF13533 Biotin-lipoyl like EEA47_24325 PF12729 Four helix bundle sensory module for signal transduction EEA47_24325 PF00672 HAMP domain EEA47_24325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_24330 PF00210 Ferritin-like domain EEA47_24340 PF07995 Glucose / Sorbosone dehydrogenase EEA47_24345 PF00465 Iron-containing alcohol dehydrogenase EEA47_24355 PF00892 EamA-like transporter family EEA47_24365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_24365 PF03466 LysR substrate binding domain EEA47_24375 PF00501 AMP-binding enzyme EEA47_24375 PF13193 AMP-binding enzyme C-terminal domain EEA47_24380 PF00351 Biopterin-dependent aromatic amino acid hydroxylase EEA47_24385 PF01329 Pterin 4 alpha carbinolamine dehydratase EEA47_24405 PF12843 Putative quorum-sensing-regulated virulence factor EEA47_24415 PF01810 LysE type translocator EEA47_24420 PF07729 FCD domain EEA47_24420 PF00392 Bacterial regulatory proteins, gntR family EEA47_24435 PF01810 LysE type translocator EEA47_24450 PF01925 Sulfite exporter TauE/SafE EEA47_24460 PF00271 Helicase conserved C-terminal domain EEA47_24460 PF00270 DEAD/DEAH box helicase EEA47_24465 PF09905 DNA-binding protein VF530 EEA47_24475 PF00291 Pyridoxal-phosphate dependent enzyme EEA47_24485 PF00313 'Cold-shock' DNA-binding domain EEA47_24495 PF01470 Pyroglutamyl peptidase EEA47_24505 PF07683 Cobalamin synthesis protein cobW C-terminal domain EEA47_24505 PF02492 CobW/HypB/UreG, nucleotide-binding domain EEA47_24510 PF00271 Helicase conserved C-terminal domain EEA47_24510 PF00270 DEAD/DEAH box helicase EEA47_24530 PF00563 EAL domain EEA47_24530 PF12792 CSS motif domain associated with EAL EEA47_24535 PF00005 ABC transporter EEA47_24540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEA47_24540 PF00672 HAMP domain EEA47_24605 PF01575 MaoC like domain EEA47_24610 PF12849 PBP superfamily domain EEA47_24620 PF12833 Helix-turn-helix domain EEA47_24625 PF08206 Ribonuclease B OB domain EEA47_24625 PF00773 RNB domain EEA47_24625 PF00575 S1 RNA binding domain EEA47_24630 PF00271 Helicase conserved C-terminal domain EEA47_24630 PF00270 DEAD/DEAH box helicase EEA47_24630 PF03880 DbpA RNA binding domain EEA47_24645 PF00871 Acetokinase family EEA47_24650 PF03466 LysR substrate binding domain EEA47_24650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEA47_24655 PF12146 Serine aminopeptidase, S33 EEA47_24660 PF12146 Serine aminopeptidase, S33 EEA47_24675 PF01925 Sulfite exporter TauE/SafE EEA47_24690 PF01475 Ferric uptake regulator family EEA47_24695 PF01979 Amidohydrolase family EEA47_24700 PF00132 Bacterial transferase hexapeptide (six repeats) EEA47_24705 PF07683 Cobalamin synthesis protein cobW C-terminal domain EEA47_24705 PF02492 CobW/HypB/UreG, nucleotide-binding domain EEA47_24710 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EEA47_24715 PF01476 LysM domain EEA47_24715 PF08525 Opacity-associated protein A N-terminal motif EEA47_24715 PF01551 Peptidase family M23 EEA47_24725 PF02492 CobW/HypB/UreG, nucleotide-binding domain EEA47_24725 PF07683 Cobalamin synthesis protein cobW C-terminal domain EEA47_24730 PF02492 CobW/HypB/UreG, nucleotide-binding domain EEA47_24730 PF07683 Cobalamin synthesis protein cobW C-terminal domain EEA47_24735 PF01258 Prokaryotic dksA/traR C4-type zinc finger EEA47_24745 PF01914 MarC family integral membrane protein