locus-tag class description VA208B3_00010 PF00308 Bacterial dnaA protein VA208B3_00010 PF08299 Bacterial dnaA protein helix-turn-helix VA208B3_00010 PF11638 DnaA N-terminal domain VA208B3_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain VA208B3_00020 PF02767 DNA polymerase III beta subunit, central domain VA208B3_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain VA208B3_00030 PF02463 RecF/RecN/SMC N terminal domain VA208B3_00040 PF00204 DNA gyrase B VA208B3_00040 PF00986 DNA gyrase B subunit, carboxyl terminus VA208B3_00040 PF18053 DNA gyrase B subunit insert domain VA208B3_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_00040 PF01751 Toprim domain VA208B3_00060 PF00011 Hsp20/alpha crystallin family VA208B3_00070 PF00155 Aminotransferase class I and II VA208B3_00080 PF00128 Alpha amylase, catalytic domain VA208B3_00090 PF05746 DALR anticodon binding domain VA208B3_00090 PF02092 Glycyl-tRNA synthetase beta subunit VA208B3_00100 PF02091 Glycyl-tRNA synthetase alpha subunit VA208B3_00110 PF01169 Uncharacterized protein family UPF0016 VA208B3_00130 PF01206 Sulfurtransferase TusA VA208B3_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_00150 PF03466 LysR substrate binding domain VA208B3_00160 PF08240 Alcohol dehydrogenase GroES-like domain VA208B3_00160 PF00107 Zinc-binding dehydrogenase VA208B3_00170 PF02803 Thiolase, C-terminal domain VA208B3_00170 PF00108 Thiolase, N-terminal domain VA208B3_00180 PF00378 Enoyl-CoA hydratase/isomerase VA208B3_00180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VA208B3_00180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VA208B3_00190 PF01205 Uncharacterized protein family UPF0029 VA208B3_00190 PF09186 Domain of unknown function (DUF1949) VA208B3_00200 PF02386 Cation transport protein VA208B3_00210 PF12724 Flavodoxin domain VA208B3_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_00220 PF03466 LysR substrate binding domain VA208B3_00230 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VA208B3_00230 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VA208B3_00240 PF04380 Membrane fusogenic activity VA208B3_00250 PF00873 AcrB/AcrD/AcrF family VA208B3_00260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_00270 PF00440 Bacterial regulatory proteins, tetR family VA208B3_00270 PF16295 Tetracyclin repressor-like, C-terminal domain VA208B3_00280 PF13361 UvrD-like helicase C-terminal domain VA208B3_00280 PF00580 UvrD/REP helicase N-terminal domain VA208B3_00290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA208B3_00300 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_00310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_00310 PF00005 ABC transporter VA208B3_00320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_00330 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_00340 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_00340 PF12911 N-terminal TM domain of oligopeptide transport permease C VA208B3_00400 PF00069 Protein kinase domain VA208B3_00410 PF00356 Bacterial regulatory proteins, lacI family VA208B3_00410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA208B3_00420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_00420 PF03466 LysR substrate binding domain VA208B3_00430 PF00893 Small Multidrug Resistance protein VA208B3_00440 PF00893 Small Multidrug Resistance protein VA208B3_00450 PF00920 Dehydratase family VA208B3_00460 PF01202 Shikimate kinase VA208B3_00470 PF02447 GntP family permease VA208B3_00480 PF01081 KDPG and KHG aldolase VA208B3_00490 PF01048 Phosphorylase superfamily VA208B3_00500 PF03466 LysR substrate binding domain VA208B3_00500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_00510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA208B3_00510 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_00520 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VA208B3_00530 PF01432 Peptidase family M3 VA208B3_00540 PF01037 Lrp/AsnC ligand binding domain VA208B3_00550 PF08448 PAS fold VA208B3_00550 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_00550 PF00563 EAL domain VA208B3_00560 PF04445 Putative SAM-dependent methyltransferase VA208B3_00580 PF00892 EamA-like transporter family VA208B3_00590 PF00582 Universal stress protein family VA208B3_00600 PF00210 Ferritin-like domain VA208B3_00610 PF10625 Universal stress protein B (UspB) VA208B3_00630 PF01590 GAF domain VA208B3_00630 PF00158 Sigma-54 interaction domain VA208B3_00630 PF02954 Bacterial regulatory protein, Fis family VA208B3_00640 PF04972 BON domain VA208B3_00740 PF01594 AI-2E family transporter VA208B3_00750 PF03707 Bacterial signalling protein N terminal repeat VA208B3_00750 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_00750 PF00563 EAL domain VA208B3_00770 PF02646 RmuC family VA208B3_00780 PF01209 ubiE/COQ5 methyltransferase family VA208B3_00790 PF02036 SCP-2 sterol transfer family VA208B3_00800 PF03109 ABC1 family VA208B3_00810 PF02416 mttA/Hcf106 family VA208B3_00820 PF02416 mttA/Hcf106 family VA208B3_00830 PF00902 Sec-independent protein translocase protein (TatC) VA208B3_00840 PF01026 TatD related DNase VA208B3_00850 PF00490 Delta-aminolevulinic acid dehydratase VA208B3_00870 PF01612 3'-5' exonuclease VA208B3_00870 PF00476 DNA polymerase family A VA208B3_00870 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VA208B3_00870 PF01367 5'-3' exonuclease, C-terminal SAM fold VA208B3_00880 PF01926 50S ribosome-binding GTPase VA208B3_00890 PF00034 Cytochrome c VA208B3_00910 PF04220 Der GTPase activator (YihI) VA208B3_00920 PF10675 Protein of unknown function (DUF2489) VA208B3_00930 PF06969 HemN C-terminal domain VA208B3_00930 PF04055 Radical SAM superfamily VA208B3_00940 PF00962 Adenosine/AMP deaminase VA208B3_00950 PF00563 EAL domain VA208B3_00950 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_00950 PF03707 Bacterial signalling protein N terminal repeat VA208B3_00960 PF02954 Bacterial regulatory protein, Fis family VA208B3_00960 PF00072 Response regulator receiver domain VA208B3_00960 PF00158 Sigma-54 interaction domain VA208B3_00970 PF00989 PAS fold VA208B3_00970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_00970 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_00990 PF03951 Glutamine synthetase, beta-Grasp domain VA208B3_00990 PF00120 Glutamine synthetase, catalytic domain VA208B3_01000 PF00009 Elongation factor Tu GTP binding domain VA208B3_01000 PF03144 Elongation factor Tu domain 2 VA208B3_01000 PF00679 Elongation factor G C-terminus VA208B3_01030 PF03631 Virulence factor BrkB VA208B3_01040 PF02580 D-Tyr-tRNA(Tyr) deacylase VA208B3_01050 PF00583 Acetyltransferase (GNAT) family VA208B3_01050 PF09500 Putative thioesterase (yiiD_Cterm) VA208B3_01070 PF01293 Phosphoenolpyruvate carboxykinase VA208B3_01080 PF01430 Hsp33 protein VA208B3_01090 PF01479 S4 domain VA208B3_01100 PF11356 Type II secretion system protein C VA208B3_01110 PF00263 Bacterial type II and III secretion system protein VA208B3_01110 PF03958 Bacterial type II/III secretion system short domain VA208B3_01120 PF00437 Type II/IV secretion system protein VA208B3_01130 PF00482 Type II secretion system (T2SS), protein F VA208B3_01140 PF07963 Prokaryotic N-terminal methylation motif VA208B3_01140 PF08334 Type II secretion system (T2SS), protein G VA208B3_01150 PF12019 Type II transport protein GspH VA208B3_01160 PF07963 Prokaryotic N-terminal methylation motif VA208B3_01160 PF02501 Type II secretion system (T2SS), protein I VA208B3_01170 PF07963 Prokaryotic N-terminal methylation motif VA208B3_01170 PF11612 Type II secretion system (T2SS), protein J VA208B3_01180 PF03934 Type II secretion system (T2SS), protein K VA208B3_01190 PF05134 Type II secretion system (T2SS), protein L VA208B3_01190 PF12693 GspL periplasmic domain VA208B3_01200 PF04612 Type II secretion system (T2SS), protein M VA208B3_01210 PF01203 Type II secretion system (T2SS), protein N VA208B3_01220 PF00459 Inositol monophosphatase family VA208B3_01230 PF00293 NUDIX domain VA208B3_01240 PF01106 NifU-like domain VA208B3_01240 PF01521 Iron-sulphur cluster biosynthesis VA208B3_01250 PF00561 alpha/beta hydrolase fold VA208B3_01270 PF17674 HHH domain VA208B3_01270 PF09371 Tex-like protein N-terminal domain VA208B3_01270 PF16921 Tex protein YqgF-like domain VA208B3_01270 PF00575 S1 RNA binding domain VA208B3_01290 PF01272 Transcription elongation factor, GreA/GreB, C-term VA208B3_01290 PF03449 Transcription elongation factor, N-terminal VA208B3_01310 PF00072 Response regulator receiver domain VA208B3_01310 PF00486 Transcriptional regulatory protein, C terminal VA208B3_01320 PF00672 HAMP domain VA208B3_01320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_01320 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_01330 PF00860 Permease family VA208B3_01350 PF00271 Helicase conserved C-terminal domain VA208B3_01350 PF00270 DEAD/DEAH box helicase VA208B3_01350 PF17191 RecG wedge domain VA208B3_01360 PF12105 SpoU, rRNA methylase, C-terminal VA208B3_01360 PF00588 SpoU rRNA Methylase family VA208B3_01370 PF13291 ACT domain VA208B3_01370 PF04607 Region found in RelA / SpoT proteins VA208B3_01370 PF02824 TGS domain VA208B3_01380 PF01192 RNA polymerase Rpb6 VA208B3_01390 PF00625 Guanylate kinase VA208B3_01420 PF02472 Biopolymer transport protein ExbD/TolR VA208B3_01430 PF01618 MotA/TolQ/ExbB proton channel family VA208B3_01460 PF07715 TonB-dependent Receptor Plug Domain VA208B3_01460 PF00593 TonB dependent receptor VA208B3_01470 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_01480 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_01480 PF12911 N-terminal TM domain of oligopeptide transport permease C VA208B3_01490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_01500 PF00005 ABC transporter VA208B3_01500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_01510 PF00005 ABC transporter VA208B3_01510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_01580 PF01555 DNA methylase VA208B3_01680 PF08340 Domain of unknown function (DUF1732) VA208B3_01680 PF03755 YicC-like family, N-terminal region VA208B3_01690 PF03725 3' exoribonuclease family, domain 2 VA208B3_01690 PF01138 3' exoribonuclease family, domain 1 VA208B3_01700 PF00156 Phosphoribosyl transferase domain VA208B3_01710 PF03279 Bacterial lipid A biosynthesis acyltransferase VA208B3_01720 PF00440 Bacterial regulatory proteins, tetR family VA208B3_01730 PF04127 DNA / pantothenate metabolism flavoprotein VA208B3_01730 PF02441 Flavoprotein VA208B3_01740 PF00672 HAMP domain VA208B3_01740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_01740 PF17200 Single Cache domain 2 VA208B3_01750 PF04002 RadC-like JAB domain VA208B3_01760 PF00830 Ribosomal L28 family VA208B3_01770 PF00471 Ribosomal protein L33 VA208B3_01790 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VA208B3_01790 PF06827 Zinc finger found in FPG and IleRS VA208B3_01790 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VA208B3_01800 PF05686 Glycosyl transferase family 90 VA208B3_01810 PF01467 Cytidylyltransferase-like VA208B3_01820 PF00534 Glycosyl transferases group 1 VA208B3_01820 PF13439 Glycosyltransferase Family 4 VA208B3_01830 PF00535 Glycosyl transferase family 2 VA208B3_01840 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VA208B3_01850 PF01219 Prokaryotic diacylglycerol kinase VA208B3_01870 PF16363 GDP-mannose 4,6 dehydratase VA208B3_01880 PF00483 Nucleotidyl transferase VA208B3_01890 PF05523 WxcM-like, C-terminal VA208B3_01900 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_01910 PF01575 MaoC like domain VA208B3_01920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VA208B3_01950 PF00534 Glycosyl transferases group 1 VA208B3_01950 PF13439 Glycosyltransferase Family 4 VA208B3_01970 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VA208B3_01980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VA208B3_01990 PF03279 Bacterial lipid A biosynthesis acyltransferase VA208B3_02000 PF01370 NAD dependent epimerase/dehydratase family VA208B3_02010 PF06082 Exopolysaccharide biosynthesis protein YbjH VA208B3_02080 PF02719 Polysaccharide biosynthesis protein VA208B3_02090 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VA208B3_02100 PF02348 Cytidylyltransferase VA208B3_02140 PF03102 NeuB family VA208B3_02140 PF08666 SAF domain VA208B3_02150 PF00535 Glycosyl transferase family 2 VA208B3_02200 PF00535 Glycosyl transferase family 2 VA208B3_02210 PF00953 Glycosyl transferase family 4 VA208B3_02220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VA208B3_02220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VA208B3_02220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VA208B3_02230 PF01370 NAD dependent epimerase/dehydratase family VA208B3_02240 PF00483 Nucleotidyl transferase VA208B3_02250 PF00753 Metallo-beta-lactamase superfamily VA208B3_02250 PF10996 Beta-Casp domain VA208B3_02250 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VA208B3_02260 PF00121 Triosephosphate isomerase VA208B3_02300 PF00455 DeoR C terminal sensor domain VA208B3_02300 PF08220 DeoR-like helix-turn-helix domain VA208B3_02310 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VA208B3_02320 PF06005 Cell division protein ZapB VA208B3_02330 PF03737 Aldolase/RraA VA208B3_02340 PF01040 UbiA prenyltransferase family VA208B3_02400 PF04002 RadC-like JAB domain VA208B3_02430 PF07724 AAA domain (Cdc48 subfamily) VA208B3_02430 PF00004 ATPase family associated with various cellular activities (AAA) VA208B3_02440 PF00227 Proteasome subunit VA208B3_02460 PF00356 Bacterial regulatory proteins, lacI family VA208B3_02470 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VA208B3_02470 PF18074 Primosomal protein N C-terminal domain VA208B3_02470 PF17764 3′ DNA-binding domain (3′BD) VA208B3_02470 PF00271 Helicase conserved C-terminal domain VA208B3_02470 PF00270 DEAD/DEAH box helicase VA208B3_02480 PF01197 Ribosomal protein L31 VA208B3_02490 PF00338 Ribosomal protein S10p/S20e VA208B3_02500 PF00297 Ribosomal protein L3 VA208B3_02510 PF00573 Ribosomal protein L4/L1 family VA208B3_02520 PF00276 Ribosomal protein L23 VA208B3_02530 PF00181 Ribosomal Proteins L2, RNA binding domain VA208B3_02530 PF03947 Ribosomal Proteins L2, C-terminal domain VA208B3_02540 PF00203 Ribosomal protein S19 VA208B3_02550 PF00237 Ribosomal protein L22p/L17e VA208B3_02560 PF07650 KH domain VA208B3_02560 PF00189 Ribosomal protein S3, C-terminal domain VA208B3_02570 PF00252 Ribosomal protein L16p/L10e VA208B3_02580 PF00831 Ribosomal L29 protein VA208B3_02590 PF00366 Ribosomal protein S17 VA208B3_02600 PF00238 Ribosomal protein L14p/L23e VA208B3_02610 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VA208B3_02610 PF00467 KOW motif VA208B3_02620 PF00281 Ribosomal protein L5 VA208B3_02620 PF00673 ribosomal L5P family C-terminus VA208B3_02630 PF00253 Ribosomal protein S14p/S29e VA208B3_02640 PF00410 Ribosomal protein S8 VA208B3_02650 PF00347 Ribosomal protein L6 VA208B3_02660 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VA208B3_02670 PF03719 Ribosomal protein S5, C-terminal domain VA208B3_02670 PF00333 Ribosomal protein S5, N-terminal domain VA208B3_02680 PF00327 Ribosomal protein L30p/L7e VA208B3_02690 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VA208B3_02700 PF00344 SecY translocase VA208B3_02710 PF00416 Ribosomal protein S13/S18 VA208B3_02720 PF00411 Ribosomal protein S11 VA208B3_02730 PF00163 Ribosomal protein S4/S9 N-terminal domain VA208B3_02730 PF01479 S4 domain VA208B3_02740 PF01000 RNA polymerase Rpb3/RpoA insert domain VA208B3_02740 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VA208B3_02740 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VA208B3_02750 PF01196 Ribosomal protein L17 VA208B3_02770 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA208B3_02770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA208B3_02790 PF13673 Acetyltransferase (GNAT) domain VA208B3_02800 PF03880 DbpA RNA binding domain VA208B3_02800 PF00271 Helicase conserved C-terminal domain VA208B3_02800 PF00270 DEAD/DEAH box helicase VA208B3_02820 PF02872 5'-nucleotidase, C-terminal domain VA208B3_02820 PF00149 Calcineurin-like phosphoesterase VA208B3_02830 PF10414 Sirohaem synthase dimerisation region VA208B3_02830 PF14824 Sirohaem biosynthesis protein central VA208B3_02830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA208B3_02840 PF01507 Phosphoadenosine phosphosulfate reductase family VA208B3_02850 PF00009 Elongation factor Tu GTP binding domain VA208B3_02860 PF03600 Citrate transporter VA208B3_02860 PF02080 TrkA-C domain VA208B3_02910 PF00005 ABC transporter VA208B3_02930 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VA208B3_02940 PF06526 Protein of unknown function (DUF1107) VA208B3_02950 PF01625 Peptide methionine sulfoxide reductase VA208B3_02960 PF01103 Surface antigen VA208B3_02960 PF17243 POTRA domain TamA domain 1 VA208B3_02970 PF04357 TamB, inner membrane protein subunit of TAM complex VA208B3_02980 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VA208B3_03000 PF00719 Inorganic pyrophosphatase VA208B3_03010 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VA208B3_03020 PF02875 Mur ligase family, glutamate ligase domain VA208B3_03020 PF08245 Mur ligase middle domain VA208B3_03020 PF01225 Mur ligase family, catalytic domain VA208B3_03030 PF02441 Flavoprotein VA208B3_03050 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_03060 PF00005 ABC transporter VA208B3_03090 PF16868 NMT1-like family VA208B3_03100 PF01316 Arginine repressor, DNA binding domain VA208B3_03100 PF02863 Arginine repressor, C-terminal domain VA208B3_03110 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VA208B3_03110 PF00056 lactate/malate dehydrogenase, NAD binding domain VA208B3_03130 PF00348 Polyprenyl synthetase VA208B3_03140 PF00829 Ribosomal prokaryotic L21 protein VA208B3_03150 PF01016 Ribosomal L27 protein VA208B3_03160 PF01018 GTP1/OBG VA208B3_03160 PF01926 50S ribosome-binding GTPase VA208B3_03170 PF06738 Putative threonine/serine exporter VA208B3_03180 PF12821 Threonine/Serine exporter, ThrE VA208B3_03190 PF00186 Dihydrofolate reductase VA208B3_03200 PF00149 Calcineurin-like phosphoesterase VA208B3_03210 PF04379 ApaG domain VA208B3_03220 PF00398 Ribosomal RNA adenine dimethylase VA208B3_03230 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VA208B3_03240 PF09312 SurA N-terminal domain VA208B3_03250 PF04453 LPS transport system D VA208B3_03250 PF03968 OstA-like protein VA208B3_03260 PF00226 DnaJ domain VA208B3_03260 PF05099 Tellurite resistance protein TerB VA208B3_03280 PF00694 Aconitase C-terminal domain VA208B3_03290 PF00330 Aconitase family (aconitate hydratase) VA208B3_03300 PF00180 Isocitrate/isopropylmalate dehydrogenase VA208B3_03310 PF00682 HMGL-like VA208B3_03310 PF08502 LeuA allosteric (dimerisation) domain VA208B3_03330 PF01569 PAP2 superfamily VA208B3_03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_03350 PF03466 LysR substrate binding domain VA208B3_03360 PF00501 AMP-binding enzyme VA208B3_03370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA208B3_03370 PF00205 Thiamine pyrophosphate enzyme, central domain VA208B3_03370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA208B3_03380 PF10369 Small subunit of acetolactate synthase VA208B3_03390 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_03410 PF00224 Pyruvate kinase, barrel domain VA208B3_03410 PF02887 Pyruvate kinase, alpha/beta domain VA208B3_03420 PF08220 DeoR-like helix-turn-helix domain VA208B3_03420 PF00455 DeoR C terminal sensor domain VA208B3_03430 PF01380 SIS domain VA208B3_03450 PF00072 Response regulator receiver domain VA208B3_03450 PF00486 Transcriptional regulatory protein, C terminal VA208B3_03460 PF00672 HAMP domain VA208B3_03460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_03460 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_03470 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_03480 PF05068 Mannitol repressor VA208B3_03490 PF08125 Mannitol dehydrogenase C-terminal domain VA208B3_03490 PF01232 Mannitol dehydrogenase Rossmann domain VA208B3_03500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA208B3_03500 PF02378 Phosphotransferase system, EIIC VA208B3_03500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA208B3_03560 PF03180 NLPA lipoprotein VA208B3_03690 PF02796 Helix-turn-helix domain of resolvase VA208B3_03690 PF00239 Resolvase, N terminal domain VA208B3_03710 PF03616 Sodium/glutamate symporter VA208B3_03750 PF02909 Tetracyclin repressor-like, C-terminal domain VA208B3_03750 PF00440 Bacterial regulatory proteins, tetR family VA208B3_03760 PF07690 Major Facilitator Superfamily VA208B3_03770 PF13737 Transposase DDE domain VA208B3_03820 PF04542 Sigma-70 region 2 VA208B3_03820 PF04545 Sigma-70, region 4 VA208B3_03820 PF00140 Sigma-70 factor, region 1.2 VA208B3_03820 PF03979 Sigma-70 factor, region 1.1 VA208B3_03820 PF04539 Sigma-70 region 3 VA208B3_03820 PF04546 Sigma-70, non-essential region VA208B3_03830 PF10410 DnaB-helicase binding domain of primase VA208B3_03830 PF08278 DNA primase DnaG DnaB-binding VA208B3_03830 PF08275 DNA primase catalytic core, N-terminal domain VA208B3_03830 PF01807 CHC2 zinc finger VA208B3_03840 PF09424 Yqey-like protein VA208B3_03850 PF01165 Ribosomal protein S21 VA208B3_03860 PF00814 Glycoprotease family VA208B3_03870 PF12697 Alpha/beta hydrolase family VA208B3_03880 PF02660 Glycerol-3-phosphate acyltransferase VA208B3_03890 PF02152 Dihydroneopterin aldolase VA208B3_03900 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VA208B3_03910 PF02673 Bacitracin resistance protein BacA VA208B3_03920 PF01966 HD domain VA208B3_03920 PF01743 Poly A polymerase head domain VA208B3_03920 PF12627 Probable RNA and SrmB- binding site of polymerase A VA208B3_03930 PF13401 AAA domain VA208B3_03930 PF01471 Putative peptidoglycan binding domain VA208B3_03950 PF08239 Bacterial SH3 domain VA208B3_03960 PF01384 Phosphate transporter family VA208B3_03970 PF01865 Protein of unknown function DUF47 VA208B3_03980 PF01928 CYTH domain VA208B3_04000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_04000 PF00672 HAMP domain VA208B3_04010 PF03710 Glutamate-ammonia ligase adenylyltransferase VA208B3_04010 PF08335 GlnD PII-uridylyltransferase VA208B3_04020 PF01467 Cytidylyltransferase-like VA208B3_04020 PF00294 pfkB family carbohydrate kinase VA208B3_04030 PF02321 Outer membrane efflux protein VA208B3_04040 PF00293 NUDIX domain VA208B3_04050 PF06853 Protein of unknown function (DUF1249) VA208B3_04060 PF00149 Calcineurin-like phosphoesterase VA208B3_04070 PF05728 Uncharacterised protein family (UPF0227) VA208B3_04080 PF00204 DNA gyrase B VA208B3_04080 PF00986 DNA gyrase B subunit, carboxyl terminus VA208B3_04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_04080 PF01751 Toprim domain VA208B3_04090 PF03989 DNA gyrase C-terminal domain, beta-propeller VA208B3_04090 PF00521 DNA gyrase/topoisomerase IV, subunit A VA208B3_04100 PF13180 PDZ domain VA208B3_04110 PF00595 PDZ domain VA208B3_04120 PF06295 Protein of unknown function (DUF1043) VA208B3_04130 PF03969 AFG1-like ATPase VA208B3_04140 PF00572 Ribosomal protein L13 VA208B3_04150 PF00380 Ribosomal protein S9/S16 VA208B3_04160 PF00355 Rieske [2Fe-2S] domain VA208B3_04160 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VA208B3_04170 PF00032 Cytochrome b(C-terminal)/b6/petD VA208B3_04170 PF00033 Cytochrome b/b6/petB VA208B3_04180 PF02167 Cytochrome C1 family VA208B3_04190 PF00043 Glutathione S-transferase, C-terminal domain VA208B3_04190 PF02798 Glutathione S-transferase, N-terminal domain VA208B3_04200 PF04386 Stringent starvation protein B VA208B3_04210 PF04972 BON domain VA208B3_04220 PF13580 SIS domain VA208B3_04230 PF02021 Uncharacterised protein family UPF0102 VA208B3_04240 PF04348 LppC putative lipoprotein VA208B3_04250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA208B3_04260 PF01795 MraW methylase family VA208B3_04270 PF04999 Cell division protein FtsL VA208B3_04280 PF03717 Penicillin-binding Protein dimerisation domain VA208B3_04280 PF00905 Penicillin binding protein transpeptidase domain VA208B3_04290 PF01225 Mur ligase family, catalytic domain VA208B3_04290 PF02875 Mur ligase family, glutamate ligase domain VA208B3_04290 PF08245 Mur ligase middle domain VA208B3_04300 PF01225 Mur ligase family, catalytic domain VA208B3_04300 PF02875 Mur ligase family, glutamate ligase domain VA208B3_04300 PF08245 Mur ligase middle domain VA208B3_04310 PF00953 Glycosyl transferase family 4 VA208B3_04310 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VA208B3_04320 PF02875 Mur ligase family, glutamate ligase domain VA208B3_04320 PF08245 Mur ligase middle domain VA208B3_04330 PF01098 Cell cycle protein VA208B3_04340 PF04101 Glycosyltransferase family 28 C-terminal domain VA208B3_04340 PF03033 Glycosyltransferase family 28 N-terminal domain VA208B3_04350 PF08245 Mur ligase middle domain VA208B3_04350 PF02875 Mur ligase family, glutamate ligase domain VA208B3_04350 PF01225 Mur ligase family, catalytic domain VA208B3_04360 PF08478 POTRA domain, FtsQ-type VA208B3_04360 PF03799 Cell division protein FtsQ VA208B3_04370 PF02491 SHS2 domain inserted in FTSA VA208B3_04380 PF12327 FtsZ family, C-terminal domain VA208B3_04380 PF00091 Tubulin/FtsZ family, GTPase domain VA208B3_04390 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VA208B3_04410 PF07517 SecA DEAD-like domain VA208B3_04410 PF02810 SEC-C motif VA208B3_04410 PF07516 SecA Wing and Scaffold domain VA208B3_04410 PF01043 SecA preprotein cross-linking domain VA208B3_04420 PF00293 NUDIX domain VA208B3_04430 PF05173 Dihydrodipicolinate reductase, C-terminus VA208B3_04430 PF01113 Dihydrodipicolinate reductase, N-terminus VA208B3_04440 PF00117 Glutamine amidotransferase class-I VA208B3_04440 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VA208B3_04450 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VA208B3_04450 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VA208B3_04450 PF02142 MGS-like domain VA208B3_04480 PF01925 Sulfite exporter TauE/SafE VA208B3_04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_04490 PF03466 LysR substrate binding domain VA208B3_04500 PF03458 UPF0126 domain VA208B3_04510 PF01497 Periplasmic binding protein VA208B3_04520 PF17113 Regulatory signalling modulator protein AmpE VA208B3_04520 PF03186 CobD/Cbib protein VA208B3_04530 PF01048 Phosphorylase superfamily VA208B3_04550 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_04550 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA208B3_04560 PF01645 Conserved region in glutamate synthase VA208B3_04560 PF01493 GXGXG motif VA208B3_04560 PF04898 Glutamate synthase central domain VA208B3_04560 PF00310 Glutamine amidotransferases class-II VA208B3_04570 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_04570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA208B3_04580 PF00310 Glutamine amidotransferases class-II VA208B3_04580 PF04898 Glutamate synthase central domain VA208B3_04580 PF01645 Conserved region in glutamate synthase VA208B3_04580 PF01493 GXGXG motif VA208B3_04590 PF04055 Radical SAM superfamily VA208B3_04590 PF16199 Radical_SAM C-terminal domain VA208B3_04600 PF00360 Phytochrome region VA208B3_04600 PF00563 EAL domain VA208B3_04600 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_04600 PF01590 GAF domain VA208B3_04610 PF00072 Response regulator receiver domain VA208B3_04610 PF00989 PAS fold VA208B3_04610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_04610 PF18415 Histidine kinase receptor ArcB trans-membrane domain VA208B3_04610 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_04610 PF01627 Hpt domain VA208B3_04630 PF00072 Response regulator receiver domain VA208B3_04630 PF00486 Transcriptional regulatory protein, C terminal VA208B3_04650 PF03737 Aldolase/RraA VA208B3_04670 PF00696 Amino acid kinase family VA208B3_04670 PF01842 ACT domain VA208B3_04670 PF13840 ACT domain VA208B3_04670 PF00742 Homoserine dehydrogenase VA208B3_04670 PF03447 Homoserine dehydrogenase, NAD binding domain VA208B3_04680 PF08544 GHMP kinases C terminal VA208B3_04680 PF00288 GHMP kinases N terminal domain VA208B3_04690 PF00291 Pyridoxal-phosphate dependent enzyme VA208B3_04690 PF14821 Threonine synthase N terminus VA208B3_04700 PF01228 Glycine radical VA208B3_04710 PF01261 Xylose isomerase-like TIM barrel VA208B3_04720 PF03167 Uracil DNA glycosylase superfamily VA208B3_04750 PF01235 Sodium:alanine symporter family VA208B3_04760 PF03883 Peroxide stress protein YaaA VA208B3_04770 PF00270 DEAD/DEAH box helicase VA208B3_04770 PF00271 Helicase conserved C-terminal domain VA208B3_04780 PF05175 Methyltransferase small domain VA208B3_04790 PF05525 Branched-chain amino acid transport protein VA208B3_04800 PF00258 Flavodoxin VA208B3_04810 PF02899 Phage integrase, N-terminal SAM-like domain VA208B3_04810 PF00589 Phage integrase family VA208B3_04820 PF13098 Thioredoxin-like domain VA208B3_04820 PF10411 Disulfide bond isomerase protein N-terminus VA208B3_04830 PF02272 DHHA1 domain VA208B3_04830 PF17768 RecJ OB domain VA208B3_04830 PF01368 DHH family VA208B3_04840 PF03462 PCRF domain VA208B3_04840 PF00472 RF-1 domain VA208B3_04850 PF00152 tRNA synthetases class II (D, K and N) VA208B3_04850 PF01336 OB-fold nucleic acid binding domain VA208B3_04860 PF02954 Bacterial regulatory protein, Fis family VA208B3_04860 PF00072 Response regulator receiver domain VA208B3_04860 PF00158 Sigma-54 interaction domain VA208B3_04880 PF00248 Aldo/keto reductase family VA208B3_04900 PF02976 DNA mismatch repair enzyme MutH VA208B3_04910 PF00293 NUDIX domain VA208B3_04920 PF02896 PEP-utilising enzyme, TIM barrel domain VA208B3_04920 PF05524 PEP-utilising enzyme, N-terminal VA208B3_04920 PF01590 GAF domain VA208B3_04920 PF00391 PEP-utilising enzyme, mobile domain VA208B3_04930 PF01925 Sulfite exporter TauE/SafE VA208B3_04940 PF01790 Prolipoprotein diacylglyceryl transferase VA208B3_04950 PF00303 Thymidylate synthase VA208B3_04970 PF02690 Na+/Pi-cotransporter VA208B3_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_04980 PF03466 LysR substrate binding domain VA208B3_04990 PF01022 Bacterial regulatory protein, arsR family VA208B3_05000 PF01649 Ribosomal protein S20 VA208B3_05010 PF03023 Lipid II flippase MurJ VA208B3_05020 PF06574 FAD synthetase VA208B3_05020 PF01687 Riboflavin kinase VA208B3_05030 PF08264 Anticodon-binding domain of tRNA VA208B3_05030 PF00133 tRNA synthetases class I (I, L, M and V) VA208B3_05030 PF06827 Zinc finger found in FPG and IleRS VA208B3_05040 PF01252 Signal peptidase (SPase) II VA208B3_05050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA208B3_05060 PF02401 LytB protein VA208B3_05070 PF00072 Response regulator receiver domain VA208B3_05070 PF04397 LytTr DNA-binding domain VA208B3_05080 PF07694 5TMR of 5TMR-LYT VA208B3_05080 PF06580 Histidine kinase VA208B3_05090 PF02554 Carbon starvation protein CstA VA208B3_05120 PF13580 SIS domain VA208B3_05130 PF03702 Anhydro-N-acetylmuramic acid kinase VA208B3_05140 PF00933 Glycosyl hydrolase family 3 N terminal domain VA208B3_05150 PF00793 DAHP synthetase I family VA208B3_05160 PF02153 Prephenate dehydrogenase VA208B3_05160 PF01817 Chorismate mutase type II VA208B3_05170 PF04225 Opacity-associated protein A LysM-like domain VA208B3_05170 PF01551 Peptidase family M23 VA208B3_05180 PF07238 PilZ domain VA208B3_05200 PF00005 ABC transporter VA208B3_05200 PF12848 ABC transporter VA208B3_05210 PF01464 Transglycosylase SLT domain VA208B3_05210 PF14718 Soluble lytic murein transglycosylase L domain VA208B3_05220 PF01371 Trp repressor protein VA208B3_05230 PF01931 Protein of unknown function DUF84 VA208B3_05240 PF00800 Prephenate dehydratase VA208B3_05240 PF01817 Chorismate mutase type II VA208B3_05250 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VA208B3_05260 PF01464 Transglycosylase SLT domain VA208B3_05270 PF13525 Outer membrane lipoprotein VA208B3_05280 PF00849 RNA pseudouridylate synthase VA208B3_05280 PF01479 S4 domain VA208B3_05290 PF02578 Multi-copper polyphenol oxidoreductase laccase VA208B3_05300 PF10431 C-terminal, D2-small domain, of ClpB protein VA208B3_05300 PF00004 ATPase family associated with various cellular activities (AAA) VA208B3_05300 PF02861 Clp amino terminal domain, pathogenicity island component VA208B3_05300 PF17871 AAA lid domain VA208B3_05300 PF07724 AAA domain (Cdc48 subfamily) VA208B3_05320 PF03411 Penicillin-insensitive murein endopeptidase VA208B3_05340 PF00037 4Fe-4S binding domain VA208B3_05350 PF01136 Peptidase family U32 VA208B3_05350 PF16325 Peptidase family U32 C-terminal domain VA208B3_05360 PF04381 Putative exonuclease, RdgC VA208B3_05370 PF00072 Response regulator receiver domain VA208B3_05370 PF00486 Transcriptional regulatory protein, C terminal VA208B3_05380 PF11808 Phosphate regulon sensor protein PhoR VA208B3_05380 PF00989 PAS fold VA208B3_05380 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_05390 PF12849 PBP superfamily domain VA208B3_05400 PF02541 Ppx/GppA phosphatase family VA208B3_05410 PF13090 Polyphosphate kinase C-terminal domain 2 VA208B3_05410 PF17941 Polyphosphate kinase C-terminal domain 1 VA208B3_05410 PF13089 Polyphosphate kinase N-terminal domain VA208B3_05410 PF02503 Polyphosphate kinase middle domain VA208B3_05420 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_05430 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_05440 PF00005 ABC transporter VA208B3_05450 PF01895 PhoU domain VA208B3_05460 PF03976 Polyphosphate kinase 2 (PPK2) VA208B3_05470 PF03932 CutC family VA208B3_05480 PF10417 C-terminal domain of 1-Cys peroxiredoxin VA208B3_05480 PF00578 AhpC/TSA family VA208B3_05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_05490 PF03466 LysR substrate binding domain VA208B3_05500 PF01274 Malate synthase VA208B3_05510 PF00463 Isocitrate lyase family VA208B3_05520 PF00571 CBS domain VA208B3_05540 PF02547 Queuosine biosynthesis protein VA208B3_05550 PF01702 Queuine tRNA-ribosyltransferase VA208B3_05560 PF02699 Preprotein translocase subunit VA208B3_05570 PF07549 SecD/SecF GG Motif VA208B3_05570 PF02355 Protein export membrane protein VA208B3_05570 PF13721 SecD export protein N-terminal TM region VA208B3_05580 PF02355 Protein export membrane protein VA208B3_05580 PF07549 SecD/SecF GG Motif VA208B3_05590 PF00459 Inositol monophosphatase family VA208B3_05600 PF00588 SpoU rRNA Methylase family VA208B3_05610 PF02082 Transcriptional regulator VA208B3_05620 PF00266 Aminotransferase class-V VA208B3_05630 PF01592 NifU-like N terminal domain VA208B3_05640 PF01521 Iron-sulphur cluster biosynthesis VA208B3_05650 PF00226 DnaJ domain VA208B3_05650 PF07743 HSCB C-terminal oligomerisation domain VA208B3_05660 PF00012 Hsp70 protein VA208B3_05670 PF00111 2Fe-2S iron-sulfur cluster binding domain VA208B3_05680 PF04384 Iron-sulphur cluster assembly VA208B3_05690 PF00883 Cytosol aminopeptidase family, catalytic domain VA208B3_05690 PF12404 Peptidase VA208B3_05700 PF00334 Nucleoside diphosphate kinase VA208B3_05710 PF04055 Radical SAM superfamily VA208B3_05720 PF13464 Domain of unknown function (DUF4115) VA208B3_05730 PF04551 GcpE protein VA208B3_05740 PF03129 Anticodon binding domain VA208B3_05740 PF13393 Histidyl-tRNA synthetase VA208B3_05750 PF09976 Tetratricopeptide repeat-like domain VA208B3_05760 PF13360 PQQ-like domain VA208B3_05770 PF01926 50S ribosome-binding GTPase VA208B3_05770 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VA208B3_05800 PF02601 Exonuclease VII, large subunit VA208B3_05800 PF13742 OB-fold nucleic acid binding domain VA208B3_05810 PF00571 CBS domain VA208B3_05810 PF00478 IMP dehydrogenase / GMP reductase domain VA208B3_05820 PF02540 NAD synthase VA208B3_05820 PF00958 GMP synthase C terminal domain VA208B3_05820 PF00117 Glutamine amidotransferase class-I VA208B3_05830 PF13356 Arm DNA-binding domain VA208B3_05830 PF00589 Phage integrase family VA208B3_05910 PF18821 Large polyvalent protein-associated domain 7 VA208B3_05910 PF03432 Relaxase/Mobilisation nuclease domain VA208B3_06020 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA208B3_06020 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA208B3_06020 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA208B3_06020 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA208B3_06030 PF00809 Pterin binding enzyme VA208B3_06040 PF03553 Na+/H+ antiporter family VA208B3_06050 PF06483 Chitinase C VA208B3_06050 PF00704 Glycosyl hydrolases family 18 VA208B3_06060 PF01184 GPR1/FUN34/yaaH family VA208B3_06080 PF01235 Sodium:alanine symporter family VA208B3_06090 PF01266 FAD dependent oxidoreductase VA208B3_06100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_06100 PF03466 LysR substrate binding domain VA208B3_06130 PF07969 Amidohydrolase family VA208B3_06140 PF01053 Cys/Met metabolism PLP-dependent enzyme VA208B3_06150 PF00202 Aminotransferase class-III VA208B3_06190 PF00583 Acetyltransferase (GNAT) family VA208B3_06190 PF00795 Carbon-nitrogen hydrolase VA208B3_06200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_06200 PF03466 LysR substrate binding domain VA208B3_06240 PF02384 N-6 DNA Methylase VA208B3_06300 PF01668 SmpB protein VA208B3_06310 PF03364 Polyketide cyclase / dehydrase and lipid transport VA208B3_06320 PF03658 RnfH family Ubiquitin VA208B3_06330 PF04355 SmpA / OmlA family VA208B3_06340 PF02463 RecF/RecN/SMC N terminal domain VA208B3_06360 PF01513 ATP-NAD kinase VA208B3_06370 PF01025 GrpE VA208B3_06380 PF00375 Sodium:dicarboxylate symporter family VA208B3_06390 PF00012 Hsp70 protein VA208B3_06400 PF00226 DnaJ domain VA208B3_06400 PF01556 DnaJ C terminal domain VA208B3_06400 PF00684 DnaJ central domain VA208B3_06410 PF07963 Prokaryotic N-terminal methylation motif VA208B3_06410 PF00114 Pilin (bacterial filament) VA208B3_06420 PF07963 Prokaryotic N-terminal methylation motif VA208B3_06420 PF00114 Pilin (bacterial filament) VA208B3_06470 PF03806 AbgT putative transporter family VA208B3_06480 PF14437 MafB19-like deaminase VA208B3_06490 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_06490 PF01464 Transglycosylase SLT domain VA208B3_06500 PF02769 AIR synthase related protein, C-terminal domain VA208B3_06500 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VA208B3_06500 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VA208B3_06550 PF07687 Peptidase dimerisation domain VA208B3_06550 PF01546 Peptidase family M20/M25/M40 VA208B3_06560 PF00860 Permease family VA208B3_06570 PF00156 Phosphoribosyl transferase domain VA208B3_06580 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VA208B3_06590 PF07417 Sigma factor-binding transcriptional regulator Crl VA208B3_06600 PF00696 Amino acid kinase family VA208B3_06600 PF01472 PUA domain VA208B3_06610 PF00171 Aldehyde dehydrogenase family VA208B3_06620 PF03477 ATP cone domain VA208B3_06630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA208B3_06630 PF01872 RibD C-terminal domain VA208B3_06640 PF00677 Lumazine binding domain VA208B3_06650 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VA208B3_06650 PF00925 GTP cyclohydrolase II VA208B3_06660 PF00885 6,7-dimethyl-8-ribityllumazine synthase VA208B3_06670 PF01029 NusB family VA208B3_06680 PF02769 AIR synthase related protein, C-terminal domain VA208B3_06680 PF00586 AIR synthase related protein, N-terminal domain VA208B3_06690 PF04608 Phosphatidylglycerophosphatase A VA208B3_06700 PF02779 Transketolase, pyrimidine binding domain VA208B3_06700 PF02780 Transketolase, C-terminal domain VA208B3_06700 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VA208B3_06710 PF00348 Polyprenyl synthetase VA208B3_06720 PF02609 Exonuclease VII small subunit VA208B3_06730 PF01618 MotA/TolQ/ExbB proton channel family VA208B3_06740 PF00691 OmpA family VA208B3_06750 PF02568 Thiamine biosynthesis protein (ThiI) VA208B3_06750 PF02926 THUMP domain VA208B3_06760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_06760 PF03466 LysR substrate binding domain VA208B3_06780 PF04241 Protein of unknown function (DUF423) VA208B3_06790 PF01728 FtsJ-like methyltransferase VA208B3_06790 PF18125 RlmM ferredoxin-like domain VA208B3_06800 PF01223 DNA/RNA non-specific endonuclease VA208B3_06810 PF01367 5'-3' exonuclease, C-terminal SAM fold VA208B3_06810 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VA208B3_06820 PF11892 Domain of unknown function (DUF3412) VA208B3_06820 PF03641 Possible lysine decarboxylase VA208B3_06820 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VA208B3_06830 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_06850 PF14489 QueF-like protein VA208B3_06850 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VA208B3_06860 PF07348 Syd protein (SUKH-2) VA208B3_06870 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VA208B3_06880 PF03180 NLPA lipoprotein VA208B3_06890 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_06900 PF09383 NIL domain VA208B3_06900 PF00005 ABC transporter VA208B3_06920 PF00356 Bacterial regulatory proteins, lacI family VA208B3_06930 PF00367 phosphotransferase system, EIIB VA208B3_06930 PF02378 Phosphotransferase system, EIIC VA208B3_06940 PF16657 Maltogenic Amylase, C-terminal domain VA208B3_06940 PF00128 Alpha amylase, catalytic domain VA208B3_06970 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VA208B3_06970 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VA208B3_06980 PF00464 Serine hydroxymethyltransferase VA208B3_06990 PF04055 Radical SAM superfamily VA208B3_06990 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VA208B3_07000 PF03099 Biotin/lipoate A/B protein ligase family VA208B3_07010 PF04359 Protein of unknown function (DUF493) VA208B3_07020 PF07943 Penicillin-binding protein 5, C-terminal domain VA208B3_07020 PF00768 D-alanyl-D-alanine carboxypeptidase VA208B3_07030 PF03330 Lytic transglycolase VA208B3_07030 PF05036 Sporulation related domain VA208B3_07040 PF01098 Cell cycle protein VA208B3_07050 PF03717 Penicillin-binding Protein dimerisation domain VA208B3_07050 PF00905 Penicillin binding protein transpeptidase domain VA208B3_07060 PF02590 Predicted SPOUT methyltransferase VA208B3_07080 PF06144 DNA polymerase III, delta subunit VA208B3_07080 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VA208B3_07090 PF04390 Lipopolysaccharide-assembly VA208B3_07100 PF13603 Leucyl-tRNA synthetase, Domain 2 VA208B3_07100 PF08264 Anticodon-binding domain of tRNA VA208B3_07100 PF00133 tRNA synthetases class I (I, L, M and V) VA208B3_07110 PF07295 Zinc-ribbon containing domain VA208B3_07120 PF00795 Carbon-nitrogen hydrolase VA208B3_07130 PF00571 CBS domain VA208B3_07130 PF03471 Transporter associated domain VA208B3_07140 PF02130 Uncharacterized protein family UPF0054 VA208B3_07150 PF02562 PhoH-like protein VA208B3_07160 PF00919 Uncharacterized protein family UPF0004 VA208B3_07160 PF04055 Radical SAM superfamily VA208B3_07160 PF01938 TRAM domain VA208B3_07170 PF01494 FAD binding domain VA208B3_07180 PF01926 50S ribosome-binding GTPase VA208B3_07180 PF06071 Protein of unknown function (DUF933) VA208B3_07190 PF01195 Peptidyl-tRNA hydrolase VA208B3_07200 PF14572 Phosphoribosyl synthetase-associated domain VA208B3_07200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VA208B3_07210 PF08544 GHMP kinases C terminal VA208B3_07210 PF00288 GHMP kinases N terminal domain VA208B3_07220 PF03550 Outer membrane lipoprotein LolB VA208B3_07230 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VA208B3_07230 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VA208B3_07230 PF01488 Shikimate / quinate 5-dehydrogenase VA208B3_07240 PF00472 RF-1 domain VA208B3_07240 PF03462 PCRF domain VA208B3_07250 PF17827 PrmC N-terminal domain VA208B3_07250 PF13847 Methyltransferase domain VA208B3_07260 PF04247 Invasion gene expression up-regulator, SirB VA208B3_07270 PF13369 Transglutaminase-like superfamily VA208B3_07280 PF00793 DAHP synthetase I family VA208B3_07290 PF02872 5'-nucleotidase, C-terminal domain VA208B3_07290 PF00149 Calcineurin-like phosphoesterase VA208B3_07300 PF04073 Aminoacyl-tRNA editing domain VA208B3_07310 PF01479 S4 domain VA208B3_07310 PF00849 RNA pseudouridylate synthase VA208B3_07320 PF01713 Smr domain VA208B3_07350 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VA208B3_07350 PF00728 Glycosyl hydrolase family 20, catalytic domain VA208B3_07350 PF03173 Putative carbohydrate binding domain VA208B3_07350 PF02838 Glycosyl hydrolase family 20, domain 2 VA208B3_07380 PF00403 Heavy-metal-associated domain VA208B3_07390 PF13609 Gram-negative porin VA208B3_07400 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VA208B3_07410 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA208B3_07420 PF00691 OmpA family VA208B3_07420 PF01389 OmpA-like transmembrane domain VA208B3_07500 PF01584 CheW-like domain VA208B3_07500 PF00072 Response regulator receiver domain VA208B3_07510 PF01739 CheR methyltransferase, SAM binding domain VA208B3_07510 PF03705 CheR methyltransferase, all-alpha domain VA208B3_07520 PF00460 Flagella basal body rod protein VA208B3_07530 PF00460 Flagella basal body rod protein VA208B3_07530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_07540 PF13861 FlgD Tudor-like domain VA208B3_07540 PF03963 Flagellar hook capping protein - N-terminal region VA208B3_07540 PF13860 FlgD Ig-like domain VA208B3_07550 PF07559 Flagellar basal body protein FlaE VA208B3_07550 PF00460 Flagella basal body rod protein VA208B3_07550 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_07560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_07560 PF00460 Flagella basal body rod protein VA208B3_07570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_07570 PF00460 Flagella basal body rod protein VA208B3_07580 PF02107 Flagellar L-ring protein VA208B3_07590 PF02119 Flagellar P-ring protein VA208B3_07600 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VA208B3_07600 PF10135 Rod binding protein VA208B3_07610 PF07196 Flagellin hook IN motif VA208B3_07610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_07620 PF00669 Bacterial flagellin N-terminal helical region VA208B3_07630 PF00669 Bacterial flagellin N-terminal helical region VA208B3_07630 PF07196 Flagellin hook IN motif VA208B3_07630 PF00700 Bacterial flagellin C-terminal helical region VA208B3_07640 PF07196 Flagellin hook IN motif VA208B3_07640 PF00700 Bacterial flagellin C-terminal helical region VA208B3_07640 PF00669 Bacterial flagellin N-terminal helical region VA208B3_07650 PF00700 Bacterial flagellin C-terminal helical region VA208B3_07650 PF07196 Flagellin hook IN motif VA208B3_07650 PF00669 Bacterial flagellin N-terminal helical region VA208B3_07660 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VA208B3_07670 PF05524 PEP-utilising enzyme, N-terminal VA208B3_07670 PF00391 PEP-utilising enzyme, mobile domain VA208B3_07670 PF02896 PEP-utilising enzyme, TIM barrel domain VA208B3_07680 PF00381 PTS HPr component phosphorylation site VA208B3_07690 PF00291 Pyridoxal-phosphate dependent enzyme VA208B3_07710 PF04354 ZipA, C-terminal FtsZ-binding domain VA208B3_07720 PF01653 NAD-dependent DNA ligase adenylation domain VA208B3_07720 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VA208B3_07720 PF03120 NAD-dependent DNA ligase OB-fold domain VA208B3_07720 PF00533 BRCA1 C Terminus (BRCT) domain VA208B3_07720 PF12826 Helix-hairpin-helix motif VA208B3_07740 PF03573 outer membrane porin, OprD family VA208B3_07770 PF16200 C-terminal region of band_7 VA208B3_07770 PF01145 SPFH domain / Band 7 family VA208B3_07780 PF11658 Cellulose biosynthesis protein BcsG VA208B3_07800 PF10995 Cellulose biosynthesis GIL VA208B3_07820 PF13358 DDE superfamily endonuclease VA208B3_07840 PF06564 Cellulose biosynthesis protein BcsQ VA208B3_07850 PF00535 Glycosyl transferase family 2 VA208B3_07850 PF03552 Cellulose synthase VA208B3_07850 PF07238 PilZ domain VA208B3_07860 PF03170 Bacterial cellulose synthase subunit VA208B3_07870 PF01270 Glycosyl hydrolases family 8 VA208B3_07880 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) VA208B3_07890 PF00085 Thioredoxin VA208B3_07900 PF00106 short chain dehydrogenase VA208B3_07910 PF08338 Domain of unknown function (DUF1731) VA208B3_07910 PF01370 NAD dependent epimerase/dehydratase family VA208B3_07920 PF07556 Protein of unknown function (DUF1538) VA208B3_07930 PF07556 Protein of unknown function (DUF1538) VA208B3_07970 PF12850 Calcineurin-like phosphoesterase superfamily domain VA208B3_08000 PF17323 Trans-membrane regulatory protein ToxS VA208B3_08010 PF00486 Transcriptional regulatory protein, C terminal VA208B3_08020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_08020 PF00183 Hsp90 protein VA208B3_08030 PF05191 Adenylate kinase, active site lid VA208B3_08040 PF00762 Ferrochelatase VA208B3_08050 PF00854 POT family VA208B3_08060 PF02357 Transcription termination factor nusG VA208B3_08070 PF13537 Glutamine amidotransferase domain VA208B3_08070 PF00733 Asparagine synthase VA208B3_08080 PF02254 TrkA-N domain VA208B3_08080 PF00999 Sodium/hydrogen exchanger family VA208B3_08090 PF00480 ROK family VA208B3_08090 PF01047 MarR family VA208B3_08100 PF01979 Amidohydrolase family VA208B3_08110 PF00367 phosphotransferase system, EIIB VA208B3_08110 PF02378 Phosphotransferase system, EIIC VA208B3_08120 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA208B3_08120 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VA208B3_08130 PF01475 Ferric uptake regulator family VA208B3_08140 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA208B3_08140 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA208B3_08150 PF00258 Flavodoxin VA208B3_08170 PF12697 Alpha/beta hydrolase family VA208B3_08180 PF03925 SeqA protein C-terminal domain VA208B3_08180 PF17206 SeqA protein N-terminal domain VA208B3_08190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA208B3_08190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA208B3_08190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA208B3_08190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA208B3_08210 PF01784 NIF3 (NGG1p interacting factor 3) VA208B3_08220 PF00285 Citrate synthase, C-terminal domain VA208B3_08230 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VA208B3_08240 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VA208B3_08250 PF00890 FAD binding domain VA208B3_08250 PF02910 Fumarate reductase flavoprotein C-term VA208B3_08260 PF13085 2Fe-2S iron-sulfur cluster binding domain VA208B3_08270 PF16870 2-oxoglutarate dehydrogenase C-terminal VA208B3_08270 PF02779 Transketolase, pyrimidine binding domain VA208B3_08270 PF00676 Dehydrogenase E1 component VA208B3_08270 PF16078 2-oxoglutarate dehydrogenase N-terminus VA208B3_08280 PF02817 e3 binding domain VA208B3_08280 PF00364 Biotin-requiring enzyme VA208B3_08280 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA208B3_08290 PF00549 CoA-ligase VA208B3_08290 PF08442 ATP-grasp domain VA208B3_08300 PF02629 CoA binding domain VA208B3_08300 PF00549 CoA-ligase VA208B3_08310 PF00551 Formyl transferase VA208B3_08320 PF00586 AIR synthase related protein, N-terminal domain VA208B3_08320 PF02769 AIR synthase related protein, C-terminal domain VA208B3_08350 PF00860 Permease family VA208B3_08380 PF03358 NADPH-dependent FMN reductase VA208B3_08390 PF03960 ArsC family VA208B3_08400 PF13181 Tetratricopeptide repeat VA208B3_08400 PF01435 Peptidase family M48 VA208B3_08420 PF01594 AI-2E family transporter VA208B3_08430 PF00578 AhpC/TSA family VA208B3_08440 PF01842 ACT domain VA208B3_08450 PF00701 Dihydrodipicolinate synthetase family VA208B3_08460 PF06804 NlpB/DapX lipoprotein VA208B3_08490 PF01546 Peptidase family M20/M25/M40 VA208B3_08490 PF07687 Peptidase dimerisation domain VA208B3_08500 PF03960 ArsC family VA208B3_08540 PF11143 Protein of unknown function (DUF2919) VA208B3_08550 PF04261 Dyp-type peroxidase family VA208B3_08560 PF00700 Bacterial flagellin C-terminal helical region VA208B3_08560 PF00669 Bacterial flagellin N-terminal helical region VA208B3_08560 PF07196 Flagellin hook IN motif VA208B3_08570 PF00669 Bacterial flagellin N-terminal helical region VA208B3_08570 PF00700 Bacterial flagellin C-terminal helical region VA208B3_08570 PF07196 Flagellin hook IN motif VA208B3_08580 PF00700 Bacterial flagellin C-terminal helical region VA208B3_08580 PF07196 Flagellin hook IN motif VA208B3_08580 PF00669 Bacterial flagellin N-terminal helical region VA208B3_08590 PF03646 FlaG protein VA208B3_08600 PF07195 Flagellar hook-associated protein 2 C-terminus VA208B3_08600 PF07196 Flagellin hook IN motif VA208B3_08600 PF02465 Flagellar hook-associated protein 2 N-terminus VA208B3_08620 PF02561 Flagellar protein FliS VA208B3_08630 PF06490 Flagellar regulatory protein FleQ VA208B3_08630 PF02954 Bacterial regulatory protein, Fis family VA208B3_08630 PF00158 Sigma-54 interaction domain VA208B3_08640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_08640 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_08640 PF13188 PAS domain VA208B3_08650 PF00072 Response regulator receiver domain VA208B3_08650 PF02954 Bacterial regulatory protein, Fis family VA208B3_08650 PF00158 Sigma-54 interaction domain VA208B3_08660 PF02049 Flagellar hook-basal body complex protein FliE VA208B3_08670 PF01514 Secretory protein of YscJ/FliF family VA208B3_08670 PF08345 Flagellar M-ring protein C-terminal VA208B3_08680 PF14841 FliG middle domain VA208B3_08680 PF14842 FliG N-terminal domain VA208B3_08680 PF01706 FliG C-terminal domain VA208B3_08700 PF18269 T3SS EscN ATPase C-terminal domain VA208B3_08700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA208B3_08740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA208B3_08740 PF02154 Flagellar motor switch protein FliM VA208B3_08750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA208B3_08760 PF04347 Flagellar biosynthesis protein, FliO VA208B3_08770 PF00813 FliP family VA208B3_08780 PF01313 Bacterial export proteins, family 3 VA208B3_08790 PF01311 Bacterial export proteins, family 1 VA208B3_08800 PF01312 FlhB HrpN YscU SpaS Family VA208B3_08810 PF00771 FHIPEP family VA208B3_08820 PF00448 SRP54-type protein, GTPase domain VA208B3_08830 PF10609 NUBPL iron-transfer P-loop NTPase VA208B3_08840 PF04545 Sigma-70, region 4 VA208B3_08840 PF04539 Sigma-70 region 3 VA208B3_08840 PF04542 Sigma-70 region 2 VA208B3_08850 PF00072 Response regulator receiver domain VA208B3_08860 PF04344 Chemotaxis phosphatase, CheZ VA208B3_08870 PF02895 Signal transducing histidine kinase, homodimeric domain VA208B3_08870 PF01584 CheW-like domain VA208B3_08870 PF00072 Response regulator receiver domain VA208B3_08870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_08870 PF01627 Hpt domain VA208B3_08880 PF01339 CheB methylesterase VA208B3_08880 PF00072 Response regulator receiver domain VA208B3_08890 PF13614 AAA domain VA208B3_08910 PF01584 CheW-like domain VA208B3_08930 PF00005 ABC transporter VA208B3_08940 PF03379 CcmB protein VA208B3_08950 PF01578 Cytochrome C assembly protein VA208B3_08960 PF04995 Heme exporter protein D (CcmD) VA208B3_08970 PF03100 CcmE VA208B3_08980 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VA208B3_08980 PF01578 Cytochrome C assembly protein VA208B3_08990 PF08534 Redoxin VA208B3_09000 PF03918 Cytochrome C biogenesis protein VA208B3_09020 PF04333 MlaA lipoprotein VA208B3_09030 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA208B3_09040 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA208B3_09060 PF08281 Sigma-70, region 4 VA208B3_09060 PF04542 Sigma-70 region 2 VA208B3_09070 PF02803 Thiolase, C-terminal domain VA208B3_09070 PF00108 Thiolase, N-terminal domain VA208B3_09080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VA208B3_09080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VA208B3_09080 PF00378 Enoyl-CoA hydratase/isomerase VA208B3_09100 PF16187 Middle or third domain of peptidase_M16 VA208B3_09100 PF05193 Peptidase M16 inactive domain VA208B3_09100 PF00675 Insulinase (Peptidase family M16) VA208B3_09110 PF00300 Histidine phosphatase superfamily (branch 1) VA208B3_09120 PF01713 Smr domain VA208B3_09130 PF05175 Methyltransferase small domain VA208B3_09140 PF01264 Chorismate synthase VA208B3_09150 PF03458 UPF0126 domain VA208B3_09160 PF04315 Elongation factor P hydroxylase VA208B3_09170 PF08891 YfcL protein VA208B3_09180 PF03358 NADPH-dependent FMN reductase VA208B3_09190 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VA208B3_09190 PF01266 FAD dependent oxidoreductase VA208B3_09200 PF02801 Beta-ketoacyl synthase, C-terminal domain VA208B3_09200 PF00109 Beta-ketoacyl synthase, N-terminal domain VA208B3_09210 PF11890 Domain of unknown function (DUF3410) VA208B3_09210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA208B3_09210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA208B3_09220 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA208B3_09220 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA208B3_09240 PF01416 tRNA pseudouridine synthase VA208B3_09250 PF01039 Carboxyl transferase domain VA208B3_09250 PF17848 Acetyl-coA carboxylase zinc finger domain VA208B3_09260 PF02875 Mur ligase family, glutamate ligase domain VA208B3_09260 PF08245 Mur ligase middle domain VA208B3_09270 PF05036 Sporulation related domain VA208B3_09280 PF02674 Colicin V production protein VA208B3_09290 PF00156 Phosphoribosyl transferase domain VA208B3_09300 PF03466 LysR substrate binding domain VA208B3_09300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_09310 PF00072 Response regulator receiver domain VA208B3_09330 PF04304 Protein of unknown function (DUF454) VA208B3_09340 PF00156 Phosphoribosyl transferase domain VA208B3_09350 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VA208B3_09350 PF12169 DNA polymerase III subunits gamma and tau domain III VA208B3_09350 PF12170 DNA polymerase III tau subunit V interacting with alpha VA208B3_09360 PF02575 YbaB/EbfC DNA-binding family VA208B3_09370 PF02132 RecR protein VA208B3_09370 PF13662 Toprim domain VA208B3_09380 PF00230 Major intrinsic protein VA208B3_09400 PF01042 Endoribonuclease L-PSP VA208B3_09410 PF03313 Serine dehydratase alpha chain VA208B3_09430 PF03692 Putative zinc- or iron-chelating domain VA208B3_09440 PF04226 Transglycosylase associated protein VA208B3_09450 PF03692 Putative zinc- or iron-chelating domain VA208B3_09460 PF00924 Mechanosensitive ion channel VA208B3_09460 PF05552 Conserved TM helix VA208B3_09470 PF03992 Antibiotic biosynthesis monooxygenase VA208B3_09480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA208B3_09500 PF00245 Alkaline phosphatase VA208B3_09540 PF13847 Methyltransferase domain VA208B3_09550 PF02743 Cache domain VA208B3_09550 PF00672 HAMP domain VA208B3_09550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_09560 PF01263 Aldose 1-epimerase VA208B3_09570 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA208B3_09570 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA208B3_09590 PF01641 SelR domain VA208B3_09610 PF07023 Protein of unknown function (DUF1315) VA208B3_09620 PF00710 Asparaginase, N-terminal VA208B3_09620 PF17763 Glutaminase/Asparaginase C-terminal domain VA208B3_09630 PF01343 Peptidase family S49 VA208B3_09640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA208B3_09640 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_09650 PF00881 Nitroreductase family VA208B3_09660 PF01751 Toprim domain VA208B3_09660 PF01131 DNA topoisomerase VA208B3_09680 PF00106 short chain dehydrogenase VA208B3_09690 PF00850 Histone deacetylase domain VA208B3_09700 PF11893 Domain of unknown function (DUF3413) VA208B3_09700 PF00884 Sulfatase VA208B3_09710 PF07208 Protein of unknown function (DUF1414) VA208B3_09720 PF04245 37-kD nucleoid-associated bacterial protein VA208B3_09750 PF03553 Na+/H+ antiporter family VA208B3_09760 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA208B3_09760 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA208B3_09770 PF00027 Cyclic nucleotide-binding domain VA208B3_09770 PF00520 Ion transport protein VA208B3_09780 PF01914 MarC family integral membrane protein VA208B3_09790 PF00171 Aldehyde dehydrogenase family VA208B3_09790 PF00465 Iron-containing alcohol dehydrogenase VA208B3_09820 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VA208B3_09820 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VA208B3_09830 PF00462 Glutaredoxin VA208B3_09850 PF13726 Na+-H+ antiporter family VA208B3_09850 PF03553 Na+/H+ antiporter family VA208B3_09860 PF00929 Exonuclease VA208B3_09870 PF18393 MotY N-terminal domain VA208B3_09870 PF00691 OmpA family VA208B3_09880 PF10952 Protein of unknown function (DUF2753) VA208B3_09890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA208B3_09900 PF10576 Iron-sulfur binding domain of endonuclease III VA208B3_09900 PF00633 Helix-hairpin-helix motif VA208B3_09900 PF00730 HhH-GPD superfamily base excision DNA repair protein VA208B3_09910 PF02508 Rnf-Nqr subunit, membrane protein VA208B3_09920 PF04205 FMN-binding domain VA208B3_09930 PF03116 NQR2, RnfD, RnfE family VA208B3_09940 PF12838 4Fe-4S dicluster domain VA208B3_09940 PF13375 RnfC Barrel sandwich hybrid domain VA208B3_09940 PF10531 SLBB domain VA208B3_09940 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VA208B3_09950 PF04060 Putative Fe-S cluster VA208B3_09960 PF02508 Rnf-Nqr subunit, membrane protein VA208B3_09970 PF12344 Ultra-violet resistance protein B VA208B3_09970 PF17757 UvrB interaction domain VA208B3_09970 PF04851 Type III restriction enzyme, res subunit VA208B3_09970 PF00271 Helicase conserved C-terminal domain VA208B3_09970 PF02151 UvrB/uvrC motif VA208B3_09980 PF02954 Bacterial regulatory protein, Fis family VA208B3_09980 PF00072 Response regulator receiver domain VA208B3_09980 PF00158 Sigma-54 interaction domain VA208B3_09990 PF01627 Hpt domain VA208B3_10000 PF01933 Uncharacterised protein family UPF0052 VA208B3_10010 PF04055 Radical SAM superfamily VA208B3_10010 PF06463 Molybdenum Cofactor Synthesis C VA208B3_10020 PF00994 Probable molybdopterin binding domain VA208B3_10030 PF01967 MoaC family VA208B3_10040 PF02597 ThiS family VA208B3_10050 PF02391 MoaE protein VA208B3_10060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_10070 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_10080 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_10080 PF12911 N-terminal TM domain of oligopeptide transport permease C VA208B3_10090 PF00005 ABC transporter VA208B3_10090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_10100 PF00005 ABC transporter VA208B3_10100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_10110 PF13409 Glutathione S-transferase, N-terminal domain VA208B3_10130 PF13194 Domain of unknown function (DUF4010) VA208B3_10140 PF07085 DRTGG domain VA208B3_10140 PF01515 Phosphate acetyl/butaryl transferase VA208B3_10150 PF00871 Acetokinase family VA208B3_10160 PF04217 Protein of unknown function, DUF412 VA208B3_10180 PF02653 Branched-chain amino acid transport system / permease component VA208B3_10190 PF00005 ABC transporter VA208B3_10200 PF00128 Alpha amylase, catalytic domain VA208B3_10200 PF02903 Alpha amylase, N-terminal ig-like domain VA208B3_10210 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_10210 PF00072 Response regulator receiver domain VA208B3_10220 PF01207 Dihydrouridine synthase (Dus) VA208B3_10230 PF02810 SEC-C motif VA208B3_10230 PF07517 SecA DEAD-like domain VA208B3_10230 PF01043 SecA preprotein cross-linking domain VA208B3_10230 PF07516 SecA Wing and Scaffold domain VA208B3_10240 PF02600 Disulfide bond formation protein DsbB VA208B3_10250 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VA208B3_10260 PF07840 FadR C-terminal domain VA208B3_10260 PF00392 Bacterial regulatory proteins, gntR family VA208B3_10280 PF09334 tRNA synthetases class I (M) VA208B3_10280 PF01588 Putative tRNA binding domain VA208B3_10290 PF10609 NUBPL iron-transfer P-loop NTPase VA208B3_10300 PF00485 Phosphoribulokinase / Uridine kinase family VA208B3_10320 PF12557 Cob(I)alamin adenosyltransferase N terminal VA208B3_10320 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VA208B3_10330 PF01451 Low molecular weight phosphotyrosine protein phosphatase VA208B3_10340 PF01740 STAS domain VA208B3_10340 PF00916 Sulfate permease family VA208B3_10350 PF12111 Polyribonucleotide phosphorylase C terminal VA208B3_10350 PF10150 Ribonuclease E/G family VA208B3_10350 PF00575 S1 RNA binding domain VA208B3_10360 PF01479 S4 domain VA208B3_10360 PF00849 RNA pseudouridylate synthase VA208B3_10370 PF02545 Maf-like protein VA208B3_10380 PF02620 Large ribosomal RNA subunit accumulation protein YceD VA208B3_10390 PF01783 Ribosomal L32p protein family VA208B3_10400 PF02504 Fatty acid synthesis protein VA208B3_10410 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VA208B3_10410 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VA208B3_10420 PF00698 Acyl transferase domain VA208B3_10440 PF00550 Phosphopantetheine attachment site VA208B3_10450 PF00109 Beta-ketoacyl synthase, N-terminal domain VA208B3_10450 PF02801 Beta-ketoacyl synthase, C-terminal domain VA208B3_10460 PF01063 Amino-transferase class IV VA208B3_10470 PF02618 YceG-like family VA208B3_10480 PF02223 Thymidylate kinase VA208B3_10490 PF09115 DNA polymerase III, delta subunit, C terminal VA208B3_10500 PF01026 TatD related DNase VA208B3_10510 PF02378 Phosphotransferase system, EIIC VA208B3_10510 PF00367 phosphotransferase system, EIIB VA208B3_10530 PF00209 Sodium:neurotransmitter symporter family VA208B3_10550 PF01734 Patatin-like phospholipase VA208B3_10560 PF00224 Pyruvate kinase, barrel domain VA208B3_10560 PF02887 Pyruvate kinase, alpha/beta domain VA208B3_10570 PF00480 ROK family VA208B3_10580 PF01584 CheW-like domain VA208B3_10580 PF00072 Response regulator receiver domain VA208B3_10590 PF01336 OB-fold nucleic acid binding domain VA208B3_10590 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA208B3_10590 PF02811 PHP domain VA208B3_10590 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA208B3_10590 PF14579 Helix-hairpin-helix motif VA208B3_10620 PF00106 short chain dehydrogenase VA208B3_10630 PF01343 Peptidase family S49 VA208B3_10630 PF08496 Peptidase family S49 N-terminal VA208B3_10640 PF02224 Cytidylate kinase VA208B3_10650 PF00575 S1 RNA binding domain VA208B3_10660 PF00216 Bacterial DNA-binding protein VA208B3_10670 PF06305 Lipopolysaccharide assembly protein A domain VA208B3_10680 PF18073 Rubredoxin metal binding domain VA208B3_10690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VA208B3_10700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_10720 PF01370 NAD dependent epimerase/dehydratase family VA208B3_10730 PF00535 Glycosyl transferase family 2 VA208B3_10750 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VA208B3_10770 PF02470 MlaD protein VA208B3_10780 PF04403 Paraquat-inducible protein A VA208B3_10790 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA208B3_10800 PF00034 Cytochrome c VA208B3_10810 PF01568 Molydopterin dinucleotide binding domain VA208B3_10810 PF00384 Molybdopterin oxidoreductase VA208B3_10810 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA208B3_10820 PF03916 Polysulphide reductase, NrfD VA208B3_10830 PF13247 4Fe-4S dicluster domain VA208B3_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_10840 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_10850 PF00072 Response regulator receiver domain VA208B3_10850 PF00196 Bacterial regulatory proteins, luxR family VA208B3_10860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_10860 PF03466 LysR substrate binding domain VA208B3_10880 PF02683 Cytochrome C biogenesis protein transmembrane region VA208B3_10880 PF11412 Disulphide bond corrector protein DsbC VA208B3_10890 PF00085 Thioredoxin VA208B3_10920 PF05958 tRNA (Uracil-5-)-methyltransferase VA208B3_10920 PF01938 TRAM domain VA208B3_10950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_10970 PF12704 MacB-like periplasmic core domain VA208B3_10970 PF02687 FtsX-like permease family VA208B3_10970 PF00005 ABC transporter VA208B3_10980 PF12704 MacB-like periplasmic core domain VA208B3_10980 PF02687 FtsX-like permease family VA208B3_10980 PF00005 ABC transporter VA208B3_10990 PF02687 FtsX-like permease family VA208B3_10990 PF12704 MacB-like periplasmic core domain VA208B3_10990 PF00005 ABC transporter VA208B3_11000 PF00857 Isochorismatase family VA208B3_11010 PF02311 AraC-like ligand binding domain VA208B3_11010 PF12833 Helix-turn-helix domain VA208B3_11040 PF08267 Cobalamin-independent synthase, N-terminal domain VA208B3_11040 PF01717 Cobalamin-independent synthase, Catalytic domain VA208B3_11060 PF00529 HlyD membrane-fusion protein of T1SS VA208B3_11060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_11070 PF03466 LysR substrate binding domain VA208B3_11070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_11110 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_11110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_11110 PF00672 HAMP domain VA208B3_11120 PF00486 Transcriptional regulatory protein, C terminal VA208B3_11120 PF00072 Response regulator receiver domain VA208B3_11130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_11130 PF00672 HAMP domain VA208B3_11140 PF08497 Radical SAM N-terminal VA208B3_11140 PF04055 Radical SAM superfamily VA208B3_11140 PF11842 Domain of unknown function (DUF3362) VA208B3_11150 PF00360 Phytochrome region VA208B3_11150 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_11150 PF01590 GAF domain VA208B3_11150 PF00563 EAL domain VA208B3_11180 PF03466 LysR substrate binding domain VA208B3_11180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_11190 PF01717 Cobalamin-independent synthase, Catalytic domain VA208B3_11190 PF08267 Cobalamin-independent synthase, N-terminal domain VA208B3_11210 PF03795 YCII-related domain VA208B3_11220 PF03061 Thioesterase superfamily VA208B3_11230 PF04279 Intracellular septation protein A VA208B3_11250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_11250 PF00072 Response regulator receiver domain VA208B3_11260 PF17327 Acyl homoserine lactone synthase VA208B3_11270 PF00375 Sodium:dicarboxylate symporter family VA208B3_11280 PF13193 AMP-binding enzyme C-terminal domain VA208B3_11280 PF00501 AMP-binding enzyme VA208B3_11290 PF13545 Crp-like helix-turn-helix domain VA208B3_11290 PF00027 Cyclic nucleotide-binding domain VA208B3_11300 PF00290 Tryptophan synthase alpha chain VA208B3_11310 PF00291 Pyridoxal-phosphate dependent enzyme VA208B3_11320 PF00218 Indole-3-glycerol phosphate synthase VA208B3_11320 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VA208B3_11330 PF02885 Glycosyl transferase family, helical bundle domain VA208B3_11330 PF00591 Glycosyl transferase family, a/b domain VA208B3_11340 PF00117 Glutamine amidotransferase class-I VA208B3_11350 PF04715 Anthranilate synthase component I, N terminal region VA208B3_11350 PF00425 chorismate binding enzyme VA208B3_11360 PF02811 PHP domain VA208B3_11370 PF01300 Telomere recombination VA208B3_11580 PF01479 S4 domain VA208B3_11580 PF00849 RNA pseudouridylate synthase VA208B3_11590 PF04269 Protein of unknown function, DUF440 VA208B3_11600 PF09285 Elongation factor P, C-terminal VA208B3_11600 PF08207 Elongation factor P (EF-P) KOW-like domain VA208B3_11600 PF01132 Elongation factor P (EF-P) OB domain VA208B3_11620 PF03104 DNA polymerase family B, exonuclease domain VA208B3_11620 PF00136 DNA polymerase family B VA208B3_11630 PF00196 Bacterial regulatory proteins, luxR family VA208B3_11630 PF00072 Response regulator receiver domain VA208B3_11640 PF01541 GIY-YIG catalytic domain VA208B3_11640 PF08459 UvrC Helix-hairpin-helix N-terminal VA208B3_11640 PF02151 UvrB/uvrC motif VA208B3_11650 PF01066 CDP-alcohol phosphatidyltransferase VA208B3_11660 PF00202 Aminotransferase class-III VA208B3_11670 PF16653 Saccharopine dehydrogenase C-terminal domain VA208B3_11670 PF03435 Saccharopine dehydrogenase NADP binding domain VA208B3_11680 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VA208B3_11710 PF00994 Probable molybdopterin binding domain VA208B3_11730 PF00268 Ribonucleotide reductase, small chain VA208B3_11740 PF02867 Ribonucleotide reductase, barrel domain VA208B3_11740 PF03477 ATP cone domain VA208B3_11740 PF00317 Ribonucleotide reductase, all-alpha domain VA208B3_11760 PF03989 DNA gyrase C-terminal domain, beta-propeller VA208B3_11760 PF00521 DNA gyrase/topoisomerase IV, subunit A VA208B3_11790 PF02335 Cytochrome c552 VA208B3_11810 PF13247 4Fe-4S dicluster domain VA208B3_11820 PF03916 Polysulphide reductase, NrfD VA208B3_11830 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VA208B3_11830 PF01578 Cytochrome C assembly protein VA208B3_11840 PF08534 Redoxin VA208B3_11850 PF03918 Cytochrome C biogenesis protein VA208B3_11870 PF00925 GTP cyclohydrolase II VA208B3_11920 PF03734 L,D-transpeptidase catalytic domain VA208B3_11920 PF01471 Putative peptidoglycan binding domain VA208B3_11930 PF05951 Bacterial protein of unknown function (DUF882) VA208B3_11940 PF00753 Metallo-beta-lactamase superfamily VA208B3_11970 PF03480 Bacterial extracellular solute-binding protein, family 7 VA208B3_11990 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VA208B3_12000 PF07730 Histidine kinase VA208B3_12000 PF17200 Single Cache domain 2 VA208B3_12010 PF00196 Bacterial regulatory proteins, luxR family VA208B3_12010 PF00072 Response regulator receiver domain VA208B3_12020 PF01047 MarR family VA208B3_12030 PF02028 BCCT, betaine/carnitine/choline family transporter VA208B3_12040 PF00672 HAMP domain VA208B3_12040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_12080 PF00155 Aminotransferase class I and II VA208B3_12110 PF00155 Aminotransferase class I and II VA208B3_12110 PF00392 Bacterial regulatory proteins, gntR family VA208B3_12130 PF01336 OB-fold nucleic acid binding domain VA208B3_12130 PF00152 tRNA synthetases class II (D, K and N) VA208B3_12140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_12140 PF00672 HAMP domain VA208B3_12140 PF12729 Four helix bundle sensory module for signal transduction VA208B3_12150 PF01242 6-pyruvoyl tetrahydropterin synthase VA208B3_12170 PF04940 Sensors of blue-light using FAD VA208B3_12170 PF00563 EAL domain VA208B3_12180 PF03313 Serine dehydratase alpha chain VA208B3_12180 PF03315 Serine dehydratase beta chain VA208B3_12190 PF03222 Tryptophan/tyrosine permease family VA208B3_12200 PF00293 NUDIX domain VA208B3_12220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_12220 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_12220 PF09308 LuxQ, periplasmic VA208B3_12220 PF00072 Response regulator receiver domain VA208B3_12230 PF04715 Anthranilate synthase component I, N terminal region VA208B3_12230 PF00425 chorismate binding enzyme VA208B3_12260 PF04317 YcjX-like family, DUF463 VA208B3_12270 PF05128 Domain of unknown function (DUF697) VA208B3_12280 PF18024 Helix-turn-helix domain VA208B3_12280 PF00158 Sigma-54 interaction domain VA208B3_12290 PF13302 Acetyltransferase (GNAT) domain VA208B3_12320 PF13495 Phage integrase, N-terminal SAM-like domain VA208B3_12320 PF00589 Phage integrase family VA208B3_12530 PF07859 alpha/beta hydrolase fold VA208B3_12580 PF13676 TIR domain VA208B3_12590 PF00583 Acetyltransferase (GNAT) family VA208B3_12600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA208B3_12810 PF00857 Isochorismatase family VA208B3_12850 PF04463 Protein of unknown function (DUF523) VA208B3_12910 PF01209 ubiE/COQ5 methyltransferase family VA208B3_13030 PF13737 Transposase DDE domain VA208B3_13060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_13060 PF02743 Cache domain VA208B3_13060 PF00672 HAMP domain VA208B3_13070 PF00356 Bacterial regulatory proteins, lacI family VA208B3_13090 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_13100 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_13110 PF00232 Glycosyl hydrolase family 1 VA208B3_13120 PF00005 ABC transporter VA208B3_13120 PF17912 MalK OB fold domain VA208B3_13130 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VA208B3_13130 PF06165 Glycosyltransferase family 36 VA208B3_13140 PF01263 Aldose 1-epimerase VA208B3_13160 PF00356 Bacterial regulatory proteins, lacI family VA208B3_13170 PF02927 Cellulase N-terminal ig-like domain VA208B3_13170 PF02018 Carbohydrate binding domain VA208B3_13170 PF00759 Glycosyl hydrolase family 9 VA208B3_13180 PF00722 Glycosyl hydrolases family 16 VA208B3_13190 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VA208B3_13190 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VA208B3_13200 PF00356 Bacterial regulatory proteins, lacI family VA208B3_13200 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA208B3_13210 PF00404 Dockerin type I domain VA208B3_13210 PF00759 Glycosyl hydrolase family 9 VA208B3_13210 PF02927 Cellulase N-terminal ig-like domain VA208B3_13210 PF02018 Carbohydrate binding domain VA208B3_13240 PF00657 GDSL-like Lipase/Acylhydrolase VA208B3_13240 PF17996 Carbohydrate esterase 2 N-terminal VA208B3_13240 PF00150 Cellulase (glycosyl hydrolase family 5) VA208B3_13240 PF00404 Dockerin type I domain VA208B3_13270 PF13737 Transposase DDE domain VA208B3_13390 PF13737 Transposase DDE domain VA208B3_13490 PF16363 GDP-mannose 4,6 dehydratase VA208B3_13500 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VA208B3_13500 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VA208B3_13510 PF10509 Galactokinase galactose-binding signature VA208B3_13510 PF08544 GHMP kinases C terminal VA208B3_13510 PF00288 GHMP kinases N terminal domain VA208B3_13520 PF01263 Aldose 1-epimerase VA208B3_13530 PF00356 Bacterial regulatory proteins, lacI family VA208B3_13540 PF13737 Transposase DDE domain VA208B3_13550 PF00356 Bacterial regulatory proteins, lacI family VA208B3_13560 PF00005 ABC transporter VA208B3_13560 PF17912 MalK OB fold domain VA208B3_13570 PF13416 Bacterial extracellular solute-binding protein VA208B3_13580 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_13590 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_13600 PF07745 Glycosyl hydrolase family 53 VA208B3_13610 PF08532 Beta-galactosidase trimerisation domain VA208B3_13610 PF02449 Beta-galactosidase VA208B3_13610 PF08533 Beta-galactosidase C-terminal domain VA208B3_13620 PF02264 LamB porin VA208B3_13630 PF00672 HAMP domain VA208B3_13630 PF12729 Four helix bundle sensory module for signal transduction VA208B3_13630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_13640 PF16363 GDP-mannose 4,6 dehydratase VA208B3_13650 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VA208B3_13650 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VA208B3_13660 PF13737 Transposase DDE domain VA208B3_13670 PF00873 AcrB/AcrD/AcrF family VA208B3_13730 PF04463 Protein of unknown function (DUF523) VA208B3_13830 PF13737 Transposase DDE domain VA208B3_13900 PF00583 Acetyltransferase (GNAT) family VA208B3_13950 PF03793 PASTA domain VA208B3_13950 PF00069 Protein kinase domain VA208B3_14110 PF00583 Acetyltransferase (GNAT) family VA208B3_14430 PF13533 Biotin-lipoyl like VA208B3_14450 PF08543 Phosphomethylpyrimidine kinase VA208B3_14460 PF03466 LysR substrate binding domain VA208B3_14460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_14500 PF00300 Histidine phosphatase superfamily (branch 1) VA208B3_14530 PF00939 Sodium:sulfate symporter transmembrane region VA208B3_14540 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_14540 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_14540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_14550 PF02954 Bacterial regulatory protein, Fis family VA208B3_14550 PF00072 Response regulator receiver domain VA208B3_14550 PF00158 Sigma-54 interaction domain VA208B3_14560 PF00563 EAL domain VA208B3_14560 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_14560 PF03707 Bacterial signalling protein N terminal repeat VA208B3_14570 PF11871 Domain of unknown function (DUF3391) VA208B3_14570 PF01966 HD domain VA208B3_14580 PF01810 LysE type translocator VA208B3_14590 PF11230 Protein of unknown function (DUF3029) VA208B3_14600 PF04055 Radical SAM superfamily VA208B3_14620 PF03741 Integral membrane protein TerC family VA208B3_14640 PF01966 HD domain VA208B3_14650 PF00465 Iron-containing alcohol dehydrogenase VA208B3_14660 PF03222 Tryptophan/tyrosine permease family VA208B3_14700 PF00005 ABC transporter VA208B3_14700 PF00664 ABC transporter transmembrane region VA208B3_14710 PF00664 ABC transporter transmembrane region VA208B3_14710 PF00005 ABC transporter VA208B3_14760 PF00012 Hsp70 protein VA208B3_14770 PF00012 Hsp70 protein VA208B3_14790 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_14790 PF17151 Periplasmic sensor domain VA208B3_14850 PF00384 Molybdopterin oxidoreductase VA208B3_14850 PF01568 Molydopterin dinucleotide binding domain VA208B3_14850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA208B3_14860 PF12800 4Fe-4S binding domain VA208B3_14860 PF13247 4Fe-4S dicluster domain VA208B3_14870 PF04976 DMSO reductase anchor subunit (DmsC) VA208B3_14880 PF02613 Nitrate reductase delta subunit VA208B3_14900 PF02525 Flavodoxin-like fold VA208B3_14910 PF00270 DEAD/DEAH box helicase VA208B3_14910 PF04408 Helicase associated domain (HA2) VA208B3_14910 PF11898 Domain of unknown function (DUF3418) VA208B3_14910 PF00271 Helicase conserved C-terminal domain VA208B3_14910 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VA208B3_14940 PF02028 BCCT, betaine/carnitine/choline family transporter VA208B3_14960 PF02397 Bacterial sugar transferase VA208B3_14970 PF00535 Glycosyl transferase family 2 VA208B3_14980 PF13439 Glycosyltransferase Family 4 VA208B3_14980 PF00534 Glycosyl transferases group 1 VA208B3_15040 PF13439 Glycosyltransferase Family 4 VA208B3_15040 PF00534 Glycosyl transferases group 1 VA208B3_15050 PF13439 Glycosyltransferase Family 4 VA208B3_15050 PF00534 Glycosyl transferases group 1 VA208B3_15060 PF02954 Bacterial regulatory protein, Fis family VA208B3_15060 PF00072 Response regulator receiver domain VA208B3_15060 PF00158 Sigma-54 interaction domain VA208B3_15090 PF02563 Polysaccharide biosynthesis/export protein VA208B3_15090 PF10531 SLBB domain VA208B3_15110 PF01740 STAS domain VA208B3_15120 PF14743 DNA ligase OB-like domain VA208B3_15120 PF01068 ATP dependent DNA ligase domain VA208B3_15140 PF01554 MatE VA208B3_15150 PF00677 Lumazine binding domain VA208B3_15170 PF03881 Fructosamine kinase VA208B3_15180 PF01339 CheB methylesterase VA208B3_15180 PF00072 Response regulator receiver domain VA208B3_15190 PF05230 MASE2 domain VA208B3_15190 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_15210 PF00877 NlpC/P60 family VA208B3_15220 PF17202 Single cache domain 3 VA208B3_15220 PF00672 HAMP domain VA208B3_15220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_15250 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_15250 PF17158 Membrane-associated sensor, integral membrane domain VA208B3_15270 PF05736 OprF membrane domain VA208B3_15270 PF00691 OmpA family VA208B3_15330 PF03942 DTW domain VA208B3_15340 PF00480 ROK family VA208B3_15360 PF03453 MoeA N-terminal region (domain I and II) VA208B3_15360 PF00994 Probable molybdopterin binding domain VA208B3_15360 PF03454 MoeA C-terminal region (domain IV) VA208B3_15370 PF12804 MobA-like NTP transferase domain VA208B3_15380 PF08402 TOBE domain VA208B3_15380 PF00005 ABC transporter VA208B3_15390 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_15400 PF12849 PBP superfamily domain VA208B3_15410 PF00158 Sigma-54 interaction domain VA208B3_15410 PF00072 Response regulator receiver domain VA208B3_15410 PF02954 Bacterial regulatory protein, Fis family VA208B3_15420 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_15430 PF12848 ABC transporter VA208B3_15430 PF00005 ABC transporter VA208B3_15440 PF02634 FdhD/NarQ family VA208B3_15480 PF02613 Nitrate reductase delta subunit VA208B3_15500 PF01568 Molydopterin dinucleotide binding domain VA208B3_15500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA208B3_15500 PF00384 Molybdopterin oxidoreductase VA208B3_15510 PF13247 4Fe-4S dicluster domain VA208B3_15540 PF05593 RHS Repeat VA208B3_15540 PF03527 RHS protein VA208B3_15560 PF00909 Ammonium Transporter Family VA208B3_15580 PF02146 Sir2 family VA208B3_15590 PF13416 Bacterial extracellular solute-binding protein VA208B3_15600 PF13416 Bacterial extracellular solute-binding protein VA208B3_15610 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_15620 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_15630 PF00005 ABC transporter VA208B3_15630 PF08402 TOBE domain VA208B3_15670 PF01171 PP-loop family VA208B3_15680 PF00582 Universal stress protein family VA208B3_15690 PF13545 Crp-like helix-turn-helix domain VA208B3_15690 PF00027 Cyclic nucleotide-binding domain VA208B3_15720 PF00403 Heavy-metal-associated domain VA208B3_15740 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VA208B3_15740 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VA208B3_15770 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA208B3_15800 PF09308 LuxQ, periplasmic VA208B3_15800 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_15800 PF00072 Response regulator receiver domain VA208B3_15800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_15940 PF06303 MatP N-terminal domain VA208B3_15940 PF17414 MatP C-terminal ribbon-helix-helix domain VA208B3_15950 PF13654 AAA domain VA208B3_15950 PF05362 Lon protease (S16) C-terminal proteolytic domain VA208B3_15960 PF07977 FabA-like domain VA208B3_15970 PF04957 Ribosome modulation factor VA208B3_15990 PF00005 ABC transporter VA208B3_15990 PF16326 ABC transporter C-terminal domain VA208B3_15990 PF12848 ABC transporter VA208B3_16010 PF02926 THUMP domain VA208B3_16010 PF01170 Putative RNA methylase family UPF0020 VA208B3_16010 PF10672 S-adenosylmethionine-dependent methyltransferase VA208B3_16020 PF07126 Cell-division protein ZapC VA208B3_16030 PF01180 Dihydroorotate dehydrogenase VA208B3_16040 PF05088 Bacterial NAD-glutamate dehydrogenase VA208B3_16050 PF11940 Domain of unknown function (DUF3458) Ig-like fold VA208B3_16050 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VA208B3_16050 PF01433 Peptidase family M1 domain VA208B3_16070 PF11818 C-terminal domain of tail specific protease (DUF3340) VA208B3_16070 PF00595 PDZ domain VA208B3_16070 PF03572 Peptidase family S41 VA208B3_16070 PF17804 Tail specific protease N-terminal domain VA208B3_16080 PF17516 ProQ C-terminal domain VA208B3_16080 PF04352 ProQ/FINO family VA208B3_16090 PF13185 GAF domain VA208B3_16100 PF00664 ABC transporter transmembrane region VA208B3_16100 PF00005 ABC transporter VA208B3_16110 PF04403 Paraquat-inducible protein A VA208B3_16120 PF02470 MlaD protein VA208B3_16130 PF01189 16S rRNA methyltransferase RsmB/F VA208B3_16130 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VA208B3_16130 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VA208B3_16170 PF00793 DAHP synthetase I family VA208B3_16180 PF04461 Protein of unknown function (DUF520) VA208B3_16190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA208B3_16190 PF10414 Sirohaem synthase dimerisation region VA208B3_16190 PF14824 Sirohaem biosynthesis protein central VA208B3_16200 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_16210 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_16220 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_16230 PF00005 ABC transporter VA208B3_16240 PF01027 Inhibitor of apoptosis-promoting Bax1 VA208B3_16260 PF04358 DsrC like protein VA208B3_16270 PF00708 Acylphosphatase VA208B3_16280 PF00672 HAMP domain VA208B3_16280 PF02743 Cache domain VA208B3_16280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_16290 PF17785 PUA-like domain VA208B3_16290 PF10672 S-adenosylmethionine-dependent methyltransferase VA208B3_16320 PF05736 OprF membrane domain VA208B3_16320 PF00691 OmpA family VA208B3_16330 PF06508 Queuosine biosynthesis protein QueC VA208B3_16340 PF04055 Radical SAM superfamily VA208B3_16370 PF00089 Trypsin VA208B3_16380 PF00583 Acetyltransferase (GNAT) family VA208B3_16390 PF16177 Acetyl-coenzyme A synthetase N-terminus VA208B3_16390 PF00501 AMP-binding enzyme VA208B3_16390 PF13193 AMP-binding enzyme C-terminal domain VA208B3_16400 PF04303 PrpF protein VA208B3_16410 PF00330 Aconitase family (aconitate hydratase) VA208B3_16410 PF00694 Aconitase C-terminal domain VA208B3_16420 PF00285 Citrate synthase, C-terminal domain VA208B3_16480 PF01970 Tripartite tricarboxylate transporter TctA family VA208B3_16490 PF01925 Sulfite exporter TauE/SafE VA208B3_16510 PF05844 YopD protein VA208B3_16530 PF07720 Tetratricopeptide repeat VA208B3_16540 PF04792 V antigen (LcrV) protein VA208B3_16550 PF07216 LcrG protein VA208B3_16560 PF09621 Type III secretion system regulator (LcrR) VA208B3_16570 PF00771 FHIPEP family VA208B3_16610 PF09059 TyeA VA208B3_16620 PF07201 HrpJ-like domain VA208B3_16630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA208B3_16630 PF02874 ATP synthase alpha/beta family, beta-barrel domain VA208B3_16630 PF18269 T3SS EscN ATPase C-terminal domain VA208B3_16660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA208B3_16670 PF00813 FliP family VA208B3_16680 PF01313 Bacterial export proteins, family 3 VA208B3_16690 PF01311 Bacterial export proteins, family 1 VA208B3_16700 PF01312 FlhB HrpN YscU SpaS Family VA208B3_16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_16710 PF03466 LysR substrate binding domain VA208B3_16720 PF12146 Serine aminopeptidase, S33 VA208B3_16730 PF12146 Serine aminopeptidase, S33 VA208B3_16790 PF02661 Fic/DOC family VA208B3_16810 PF02108 Flagellar assembly protein FliH VA208B3_16830 PF01514 Secretory protein of YscJ/FliF family VA208B3_16840 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VA208B3_16860 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VA208B3_16870 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VA208B3_16890 PF16697 Inner membrane component of T3SS, cytoplasmic domain VA208B3_16890 PF16693 Inner membrane component of T3SS, periplasmic domain VA208B3_16900 PF00263 Bacterial type II and III secretion system protein VA208B3_16900 PF03958 Bacterial type II/III secretion system short domain VA208B3_16930 PF12833 Helix-turn-helix domain VA208B3_16970 PF00171 Aldehyde dehydrogenase family VA208B3_16980 PF01590 GAF domain VA208B3_16980 PF02954 Bacterial regulatory protein, Fis family VA208B3_16980 PF00158 Sigma-54 interaction domain VA208B3_17010 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VA208B3_17010 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA208B3_17020 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VA208B3_17030 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VA208B3_17030 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VA208B3_17040 PF12431 Transcriptional regulator VA208B3_17040 PF00072 Response regulator receiver domain VA208B3_17050 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VA208B3_17050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_17050 PF17203 Single cache domain 3 VA208B3_17050 PF00989 PAS fold VA208B3_17080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_17110 PF00034 Cytochrome c VA208B3_17110 PF03150 Di-haem cytochrome c peroxidase VA208B3_17120 PF13840 ACT domain VA208B3_17120 PF00696 Amino acid kinase family VA208B3_17130 PF06339 Ectoine synthase VA208B3_17140 PF00202 Aminotransferase class-III VA208B3_17150 PF00583 Acetyltransferase (GNAT) family VA208B3_17160 PF02028 BCCT, betaine/carnitine/choline family transporter VA208B3_17190 PF00571 CBS domain VA208B3_17190 PF00005 ABC transporter VA208B3_17200 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_17210 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VA208B3_17230 PF00501 AMP-binding enzyme VA208B3_17270 PF00486 Transcriptional regulatory protein, C terminal VA208B3_17270 PF00072 Response regulator receiver domain VA208B3_17280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_17280 PF08521 Two-component sensor kinase N-terminal VA208B3_17280 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_17290 PF00884 Sulfatase VA208B3_17340 PF01235 Sodium:alanine symporter family VA208B3_17360 PF01810 LysE type translocator VA208B3_17370 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VA208B3_17380 PF03279 Bacterial lipid A biosynthesis acyltransferase VA208B3_17390 PF13520 Amino acid permease VA208B3_17410 PF04204 Homoserine O-succinyltransferase VA208B3_17440 PF00563 EAL domain VA208B3_17440 PF03707 Bacterial signalling protein N terminal repeat VA208B3_17440 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_17450 PF00672 HAMP domain VA208B3_17450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_17450 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_17450 PF01627 Hpt domain VA208B3_17450 PF00072 Response regulator receiver domain VA208B3_17450 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VA208B3_17480 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_17480 PF12464 Maltose acetyltransferase VA208B3_17500 PF01928 CYTH domain VA208B3_17520 PF04237 YjbR VA208B3_17530 PF01047 MarR family VA208B3_17550 PF12833 Helix-turn-helix domain VA208B3_17560 PF02272 DHHA1 domain VA208B3_17560 PF01411 tRNA synthetases class II (A) VA208B3_17560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VA208B3_17590 PF00563 EAL domain VA208B3_17590 PF00196 Bacterial regulatory proteins, luxR family VA208B3_17600 PF02833 DHHA2 domain VA208B3_17600 PF01368 DHH family VA208B3_17610 PF00202 Aminotransferase class-III VA208B3_17620 PF00171 Aldehyde dehydrogenase family VA208B3_17630 PF04371 Porphyromonas-type peptidyl-arginine deiminase VA208B3_17640 PF00795 Carbon-nitrogen hydrolase VA208B3_17650 PF01266 FAD dependent oxidoreductase VA208B3_17660 PF00171 Aldehyde dehydrogenase family VA208B3_17670 PF01381 Helix-turn-helix VA208B3_17670 PF07883 Cupin domain VA208B3_17680 PF07722 Peptidase C26 VA208B3_17690 PF00120 Glutamine synthetase, catalytic domain VA208B3_17700 PF03553 Na+/H+ antiporter family VA208B3_17740 PF13302 Acetyltransferase (GNAT) domain VA208B3_17750 PF01810 LysE type translocator VA208B3_17810 PF14497 Glutathione S-transferase, C-terminal domain VA208B3_17810 PF02798 Glutathione S-transferase, N-terminal domain VA208B3_17830 PF04209 homogentisate 1,2-dioxygenase VA208B3_17840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA208B3_17860 PF07687 Peptidase dimerisation domain VA208B3_17860 PF01546 Peptidase family M20/M25/M40 VA208B3_17870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_17880 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_17890 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_17890 PF12911 N-terminal TM domain of oligopeptide transport permease C VA208B3_17900 PF00005 ABC transporter VA208B3_17900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_17910 PF00005 ABC transporter VA208B3_17910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_17930 PF08453 Peptidase family M9 N-terminal VA208B3_17930 PF01752 Collagenase VA208B3_17950 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_17960 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_17970 PF00005 ABC transporter VA208B3_17970 PF08402 TOBE domain VA208B3_17980 PF00701 Dihydrodipicolinate synthetase family VA208B3_17990 PF02423 Ornithine cyclodeaminase/mu-crystallin family VA208B3_18020 PF05544 Proline racemase VA208B3_18030 PF00171 Aldehyde dehydrogenase family VA208B3_18040 PF00392 Bacterial regulatory proteins, gntR family VA208B3_18080 PF05971 RNA methyltransferase VA208B3_18090 PF01863 Protein of unknown function DUF45 VA208B3_18100 PF04991 LicD family VA208B3_18110 PF16363 GDP-mannose 4,6 dehydratase VA208B3_18120 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VA208B3_18160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_18160 PF03466 LysR substrate binding domain VA208B3_18200 PF00005 ABC transporter VA208B3_18210 PF01032 FecCD transport family VA208B3_18220 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VA208B3_18240 PF00300 Histidine phosphatase superfamily (branch 1) VA208B3_18250 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VA208B3_18260 PF02654 Cobalamin-5-phosphate synthase VA208B3_18270 PF02277 Phosphoribosyltransferase VA208B3_18290 PF00375 Sodium:dicarboxylate symporter family VA208B3_18300 PF08411 Exonuclease C-terminal VA208B3_18300 PF00929 Exonuclease VA208B3_18310 PF03788 LrgA family VA208B3_18320 PF04172 LrgB-like family VA208B3_18330 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VA208B3_18330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA208B3_18340 PF02222 ATP-grasp domain VA208B3_18350 PF05724 Thiopurine S-methyltransferase (TPMT) VA208B3_18370 PF00216 Bacterial DNA-binding protein VA208B3_18390 PF03484 tRNA synthetase B5 domain VA208B3_18390 PF03483 B3/4 domain VA208B3_18390 PF01588 Putative tRNA binding domain VA208B3_18390 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VA208B3_18390 PF03147 Ferredoxin-fold anticodon binding domain VA208B3_18400 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VA208B3_18400 PF01409 tRNA synthetases class II core domain (F) VA208B3_18410 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_18410 PF17158 Membrane-associated sensor, integral membrane domain VA208B3_18470 PF01906 Putative heavy-metal-binding VA208B3_18480 PF00453 Ribosomal protein L20 VA208B3_18490 PF01632 Ribosomal protein L35 VA208B3_18500 PF05198 Translation initiation factor IF-3, N-terminal domain VA208B3_18500 PF00707 Translation initiation factor IF-3, C-terminal domain VA208B3_18510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VA208B3_18510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA208B3_18510 PF02824 TGS domain VA208B3_18510 PF03129 Anticodon binding domain VA208B3_18540 PF00392 Bacterial regulatory proteins, gntR family VA208B3_18540 PF07702 UTRA domain VA208B3_18550 PF01979 Amidohydrolase family VA208B3_18560 PF00491 Arginase family VA208B3_18570 PF01175 Urocanase Rossmann-like domain VA208B3_18570 PF17391 Urocanase N-terminal domain VA208B3_18570 PF17392 Urocanase C-terminal domain VA208B3_18580 PF00221 Aromatic amino acid lyase VA208B3_18600 PF04191 Phospholipid methyltransferase VA208B3_18610 PF02913 FAD linked oxidases, C-terminal domain VA208B3_18610 PF01565 FAD binding domain VA208B3_18610 PF13183 4Fe-4S dicluster domain VA208B3_18640 PF00691 OmpA family VA208B3_18640 PF05736 OprF membrane domain VA208B3_18680 PF01259 SAICAR synthetase VA208B3_18690 PF16655 PhoD-like phosphatase, N-terminal domain VA208B3_18690 PF09423 PhoD-like phosphatase VA208B3_18710 PF02253 Phospholipase A1 VA208B3_18720 PF08482 ATP-dependent helicase C-terminal VA208B3_18720 PF00271 Helicase conserved C-terminal domain VA208B3_18720 PF00270 DEAD/DEAH box helicase VA208B3_18720 PF04408 Helicase associated domain (HA2) VA208B3_18730 PF03949 Malic enzyme, NAD binding domain VA208B3_18730 PF00390 Malic enzyme, N-terminal domain VA208B3_18740 PF02698 DUF218 domain VA208B3_18750 PF00939 Sodium:sulfate symporter transmembrane region VA208B3_18760 PF00072 Response regulator receiver domain VA208B3_18760 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_18780 PF00266 Aminotransferase class-V VA208B3_18800 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_18810 PF00005 ABC transporter VA208B3_18810 PF00664 ABC transporter transmembrane region VA208B3_18820 PF00664 ABC transporter transmembrane region VA208B3_18820 PF00005 ABC transporter VA208B3_18830 PF00291 Pyridoxal-phosphate dependent enzyme VA208B3_18840 PF00266 Aminotransferase class-V VA208B3_18860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_18860 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_18860 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_18890 PF04994 TfoX C-terminal domain VA208B3_18890 PF04993 TfoX N-terminal domain VA208B3_18920 PF03956 Lysine exporter LysO VA208B3_18940 PF00282 Pyridoxal-dependent decarboxylase conserved domain VA208B3_18950 PF01380 SIS domain VA208B3_18950 PF01418 Helix-turn-helix domain, rpiR family VA208B3_18960 PF00465 Iron-containing alcohol dehydrogenase VA208B3_18970 PF00462 Glutaredoxin VA208B3_18980 PF06826 Predicted Permease Membrane Region VA208B3_18980 PF02080 TrkA-C domain VA208B3_18990 PF12241 Trans-2-enoyl-CoA reductase catalytic region VA208B3_18990 PF07055 Enoyl reductase FAD binding domain VA208B3_18990 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VA208B3_19000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA208B3_19000 PF02770 Acyl-CoA dehydrogenase, middle domain VA208B3_19000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA208B3_19000 PF09317 Domain of unknown function (DUF1974) VA208B3_19010 PF16295 Tetracyclin repressor-like, C-terminal domain VA208B3_19010 PF00440 Bacterial regulatory proteins, tetR family VA208B3_19020 PF06965 Na+/H+ antiporter 1 VA208B3_19050 PF00005 ABC transporter VA208B3_19060 PF01554 MatE VA208B3_19070 PF11066 Protein of unknown function (DUF2867) VA208B3_19070 PF13460 NAD(P)H-binding VA208B3_19080 PF03264 NapC/NirT cytochrome c family, N-terminal region VA208B3_19110 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VA208B3_19120 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB VA208B3_19140 PF07690 Major Facilitator Superfamily VA208B3_19150 PF00849 RNA pseudouridylate synthase VA208B3_19150 PF01479 S4 domain VA208B3_19160 PF00271 Helicase conserved C-terminal domain VA208B3_19160 PF04851 Type III restriction enzyme, res subunit VA208B3_19180 PF00072 Response regulator receiver domain VA208B3_19180 PF00486 Transcriptional regulatory protein, C terminal VA208B3_19190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_19200 PF01386 Ribosomal L25p family VA208B3_19230 PF00149 Calcineurin-like phosphoesterase VA208B3_19230 PF02872 5'-nucleotidase, C-terminal domain VA208B3_19260 PF00072 Response regulator receiver domain VA208B3_19260 PF00196 Bacterial regulatory proteins, luxR family VA208B3_19270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_19270 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_19290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VA208B3_19290 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_19310 PF09335 SNARE associated Golgi protein VA208B3_19320 PF13416 Bacterial extracellular solute-binding protein VA208B3_19330 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_19340 PF00005 ABC transporter VA208B3_19350 PF01066 CDP-alcohol phosphatidyltransferase VA208B3_19370 PF01590 GAF domain VA208B3_19370 PF00158 Sigma-54 interaction domain VA208B3_19380 PF03063 Prismane/CO dehydrogenase family VA208B3_19390 PF00175 Oxidoreductase NAD-binding domain VA208B3_19390 PF00970 Oxidoreductase FAD-binding domain VA208B3_19390 PF00111 2Fe-2S iron-sulfur cluster binding domain VA208B3_19410 PF00849 RNA pseudouridylate synthase VA208B3_19420 PF12729 Four helix bundle sensory module for signal transduction VA208B3_19420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_19420 PF00672 HAMP domain VA208B3_19430 PF00209 Sodium:neurotransmitter symporter family VA208B3_19440 PF13091 PLD-like domain VA208B3_19440 PF13396 Phospholipase_D-nuclease N-terminal VA208B3_19450 PF01053 Cys/Met metabolism PLP-dependent enzyme VA208B3_19460 PF00561 alpha/beta hydrolase fold VA208B3_19470 PF03280 Proteobacterial lipase chaperone protein VA208B3_19480 PF03352 Methyladenine glycosylase VA208B3_19490 PF00873 AcrB/AcrD/AcrF family VA208B3_19510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_19520 PF04024 PspC domain VA208B3_19530 PF06667 Phage shock protein B VA208B3_19540 PF04012 PspA/IM30 family VA208B3_19550 PF02954 Bacterial regulatory protein, Fis family VA208B3_19550 PF00158 Sigma-54 interaction domain VA208B3_19560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_19570 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_19580 PF12911 N-terminal TM domain of oligopeptide transport permease C VA208B3_19580 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_19590 PF00005 ABC transporter VA208B3_19590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_19600 PF00005 ABC transporter VA208B3_19620 PF01368 DHH family VA208B3_19620 PF02833 DHHA2 domain VA208B3_19640 PF16874 Glycosyl hydrolase family 36 C-terminal domain VA208B3_19640 PF16875 Glycosyl hydrolase family 36 N-terminal domain VA208B3_19650 PF18364 Molybdopterin oxidoreductase N-terminal domain VA208B3_19650 PF01568 Molydopterin dinucleotide binding domain VA208B3_19650 PF00384 Molybdopterin oxidoreductase VA208B3_19660 PF03264 NapC/NirT cytochrome c family, N-terminal region VA208B3_19670 PF06796 Periplasmic nitrate reductase protein NapE VA208B3_19680 PF03649 Uncharacterised protein family (UPF0014) VA208B3_19700 PF01226 Formate/nitrite transporter VA208B3_19750 PF02698 DUF218 domain VA208B3_19760 PF00265 Thymidine kinase VA208B3_19770 PF01406 tRNA synthetases class I (C) catalytic domain VA208B3_19770 PF09190 DALR domain VA208B3_19780 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA208B3_19790 PF00149 Calcineurin-like phosphoesterase VA208B3_19800 PF08668 HDOD domain VA208B3_19800 PF00563 EAL domain VA208B3_19810 PF02810 SEC-C motif VA208B3_19820 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VA208B3_19820 PF01502 Phosphoribosyl-AMP cyclohydrolase VA208B3_19830 PF00977 Histidine biosynthesis protein VA208B3_19840 PF00977 Histidine biosynthesis protein VA208B3_19850 PF00117 Glutamine amidotransferase class-I VA208B3_19860 PF08645 Polynucleotide kinase 3 phosphatase VA208B3_19860 PF00475 Imidazoleglycerol-phosphate dehydratase VA208B3_19870 PF00155 Aminotransferase class I and II VA208B3_19880 PF00815 Histidinol dehydrogenase VA208B3_19890 PF08029 HisG, C-terminal domain VA208B3_19890 PF01634 ATP phosphoribosyltransferase VA208B3_19900 PF00158 Sigma-54 interaction domain VA208B3_19900 PF00072 Response regulator receiver domain VA208B3_19900 PF02954 Bacterial regulatory protein, Fis family VA208B3_19930 PF03553 Na+/H+ antiporter family VA208B3_19940 PF00816 H-NS histone family VA208B3_19950 PF00294 pfkB family carbohydrate kinase VA208B3_19980 PF04356 Protein of unknown function (DUF489) VA208B3_19990 PF00206 Lyase VA208B3_19990 PF08328 Adenylosuccinate lyase C-terminal VA208B3_20060 PF00106 short chain dehydrogenase VA208B3_20080 PF01435 Peptidase family M48 VA208B3_20110 PF08241 Methyltransferase domain VA208B3_20120 PF00155 Aminotransferase class I and II VA208B3_20130 PF06968 Biotin and Thiamin Synthesis associated domain VA208B3_20130 PF04055 Radical SAM superfamily VA208B3_20140 PF00202 Aminotransferase class-III VA208B3_20150 PF01258 Prokaryotic dksA/traR C4-type zinc finger VA208B3_20180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA208B3_20180 PF02403 Seryl-tRNA synthetase N-terminal domain VA208B3_20190 PF00004 ATPase family associated with various cellular activities (AAA) VA208B3_20190 PF16193 AAA C-terminal domain VA208B3_20190 PF12002 MgsA AAA+ ATPase C terminal VA208B3_20200 PF03548 Outer membrane lipoprotein carrier protein LolA VA208B3_20210 PF01580 FtsK/SpoIIIE family VA208B3_20210 PF09397 Ftsk gamma domain VA208B3_20210 PF17854 FtsK alpha domain VA208B3_20210 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VA208B3_20220 PF01037 Lrp/AsnC ligand binding domain VA208B3_20230 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VA208B3_20230 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VA208B3_20250 PF03466 LysR substrate binding domain VA208B3_20250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_20270 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VA208B3_20280 PF03372 Endonuclease/Exonuclease/phosphatase family VA208B3_20300 PF00579 tRNA synthetases class I (W and Y) VA208B3_20330 PF00873 AcrB/AcrD/AcrF family VA208B3_20340 PF00529 HlyD membrane-fusion protein of T1SS VA208B3_20340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_20350 PF12729 Four helix bundle sensory module for signal transduction VA208B3_20350 PF00672 HAMP domain VA208B3_20350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_20360 PF06610 L-alanine exporter VA208B3_20370 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_20370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_20370 PF09308 LuxQ, periplasmic VA208B3_20370 PF00072 Response regulator receiver domain VA208B3_20390 PF03738 Glutathionylspermidine synthase preATP-grasp VA208B3_20410 PF03994 Domain of Unknown Function (DUF350) VA208B3_20430 PF02445 Quinolinate synthetase A protein VA208B3_20440 PF16331 TolA binding protein trimerisation VA208B3_20440 PF13174 Tetratricopeptide repeat VA208B3_20450 PF00691 OmpA family VA208B3_20460 PF04052 TolB amino-terminal domain VA208B3_20460 PF07676 WD40-like Beta Propeller Repeat VA208B3_20480 PF02472 Biopolymer transport protein ExbD/TolR VA208B3_20490 PF01618 MotA/TolQ/ExbB proton channel family VA208B3_20500 PF03061 Thioesterase superfamily VA208B3_20520 PF02322 Cytochrome bd terminal oxidase subunit II VA208B3_20530 PF01654 Cytochrome bd terminal oxidase subunit I VA208B3_20540 PF05491 RuvB C-terminal winged helix domain VA208B3_20540 PF05496 Holliday junction DNA helicase RuvB P-loop domain VA208B3_20540 PF17864 RuvB AAA lid domain VA208B3_20550 PF07499 RuvA, C-terminal domain VA208B3_20550 PF01330 RuvA N terminal domain VA208B3_20560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_20560 PF00672 HAMP domain VA208B3_20560 PF02203 Tar ligand binding domain homologue VA208B3_20580 PF02075 Crossover junction endodeoxyribonuclease RuvC VA208B3_20590 PF02938 GAD domain VA208B3_20590 PF00152 tRNA synthetases class II (D, K and N) VA208B3_20590 PF01336 OB-fold nucleic acid binding domain VA208B3_20600 PF01904 Protein of unknown function DUF72 VA208B3_20610 PF13649 Methyltransferase domain VA208B3_20620 PF08003 Protein of unknown function (DUF1698) VA208B3_20630 PF18030 RimK PreATP-grasp domain VA208B3_20630 PF08443 RimK-like ATP-grasp domain VA208B3_20650 PF18030 RimK PreATP-grasp domain VA208B3_20650 PF08443 RimK-like ATP-grasp domain VA208B3_20670 PF04310 MukB N-terminal VA208B3_20670 PF16330 MukB hinge domain VA208B3_20680 PF04288 MukE-like family VA208B3_20690 PF17193 MukF C-terminal domain VA208B3_20690 PF17192 MukF middle domain VA208B3_20690 PF03882 MukF winged-helix domain VA208B3_20700 PF13847 Methyltransferase domain VA208B3_20710 PF02698 DUF218 domain VA208B3_20720 PF00072 Response regulator receiver domain VA208B3_20720 PF00486 Transcriptional regulatory protein, C terminal VA208B3_20730 PF02613 Nitrate reductase delta subunit VA208B3_20740 PF00356 Bacterial regulatory proteins, lacI family VA208B3_20760 PF04993 TfoX N-terminal domain VA208B3_20760 PF04994 TfoX C-terminal domain VA208B3_20800 PF08323 Starch synthase catalytic domain VA208B3_20800 PF00534 Glycosyl transferases group 1 VA208B3_20810 PF00483 Nucleotidyl transferase VA208B3_20820 PF08272 Topoisomerase I zinc-ribbon-like VA208B3_20820 PF01131 DNA topoisomerase VA208B3_20820 PF01751 Toprim domain VA208B3_20820 PF01396 Topoisomerase DNA binding C4 zinc finger VA208B3_20830 PF10692 Protein of unknown function (DUF2498) VA208B3_20840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VA208B3_20860 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VA208B3_20870 PF04376 Arginine-tRNA-protein transferase, N terminus VA208B3_20870 PF04377 Arginine-tRNA-protein transferase, C terminus VA208B3_20880 PF01176 Translation initiation factor 1A / IF-1 VA208B3_20900 PF00004 ATPase family associated with various cellular activities (AAA) VA208B3_20900 PF07724 AAA domain (Cdc48 subfamily) VA208B3_20900 PF17871 AAA lid domain VA208B3_20900 PF02861 Clp amino terminal domain, pathogenicity island component VA208B3_20900 PF10431 C-terminal, D2-small domain, of ClpB protein VA208B3_20910 PF02617 ATP-dependent Clp protease adaptor protein ClpS VA208B3_20920 PF00313 'Cold-shock' DNA-binding domain VA208B3_20930 PF03971 Monomeric isocitrate dehydrogenase VA208B3_20940 PF00849 RNA pseudouridylate synthase VA208B3_20950 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VA208B3_20970 PF06733 DEAD_2 VA208B3_20970 PF13307 Helicase C-terminal domain VA208B3_20980 PF01925 Sulfite exporter TauE/SafE VA208B3_20990 PF07445 Primosomal replication protein priC VA208B3_21000 PF10689 Protein of unknown function (DUF2496) VA208B3_21010 PF03372 Endonuclease/Exonuclease/phosphatase family VA208B3_21030 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_21040 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_21050 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_21060 PF00005 ABC transporter VA208B3_21090 PF02901 Pyruvate formate lyase-like VA208B3_21090 PF01228 Glycine radical VA208B3_21110 PF04055 Radical SAM superfamily VA208B3_21130 PF03887 YfbU domain VA208B3_21140 PF06798 PrkA serine protein kinase C-terminal domain VA208B3_21140 PF08298 PrkA AAA domain VA208B3_21150 PF04285 Protein of unknown function (DUF444) VA208B3_21160 PF04293 SpoVR like protein VA208B3_21170 PF02348 Cytidylyltransferase VA208B3_21180 PF03966 Trm112p-like protein VA208B3_21190 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VA208B3_21200 PF00005 ABC transporter VA208B3_21200 PF00664 ABC transporter transmembrane region VA208B3_21210 PF03772 Competence protein VA208B3_21210 PF00753 Metallo-beta-lactamase superfamily VA208B3_21230 PF02687 FtsX-like permease family VA208B3_21230 PF12704 MacB-like periplasmic core domain VA208B3_21240 PF00005 ABC transporter VA208B3_21250 PF12704 MacB-like periplasmic core domain VA208B3_21250 PF02687 FtsX-like permease family VA208B3_21270 PF17757 UvrB interaction domain VA208B3_21270 PF02559 CarD-like/TRCF domain VA208B3_21270 PF00270 DEAD/DEAH box helicase VA208B3_21270 PF00271 Helicase conserved C-terminal domain VA208B3_21270 PF03461 TRCF domain VA208B3_21300 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_21310 PF05728 Uncharacterised protein family (UPF0227) VA208B3_21330 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VA208B3_21330 PF13036 Peptidoglycan-synthase activator LpoB VA208B3_21360 PF01230 HIT domain VA208B3_21370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_21370 PF00672 HAMP domain VA208B3_21390 PF01048 Phosphorylase superfamily VA208B3_21400 PF00403 Heavy-metal-associated domain VA208B3_21410 PF00571 CBS domain VA208B3_21410 PF00478 IMP dehydrogenase / GMP reductase domain VA208B3_21430 PF11953 Domain of unknown function (DUF3470) VA208B3_21430 PF00037 4Fe-4S binding domain VA208B3_21440 PF00588 SpoU rRNA Methylase family VA208B3_21440 PF08032 RNA 2'-O ribose methyltransferase substrate binding VA208B3_21450 PF17152 Periplasmic sensor domain VA208B3_21450 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_21470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VA208B3_21480 PF09619 Type III secretion system lipoprotein chaperone (YscW) VA208B3_21510 PF01037 Lrp/AsnC ligand binding domain VA208B3_21510 PF13404 AsnC-type helix-turn-helix domain VA208B3_21520 PF00291 Pyridoxal-phosphate dependent enzyme VA208B3_21560 PF00873 AcrB/AcrD/AcrF family VA208B3_21570 PF13533 Biotin-lipoyl like VA208B3_21610 PF07690 Major Facilitator Superfamily VA208B3_21630 PF03601 Conserved hypothetical protein 698 VA208B3_21650 PF00501 AMP-binding enzyme VA208B3_21650 PF13193 AMP-binding enzyme C-terminal domain VA208B3_21660 PF13378 Enolase C-terminal domain-like VA208B3_21670 PF00378 Enoyl-CoA hydratase/isomerase VA208B3_21680 PF12697 Alpha/beta hydrolase family VA208B3_21690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA208B3_21690 PF16582 Middle domain of thiamine pyrophosphate VA208B3_21690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA208B3_21700 PF00425 chorismate binding enzyme VA208B3_21710 PF00155 Aminotransferase class I and II VA208B3_21730 PF13286 Phosphohydrolase-associated domain VA208B3_21730 PF01966 HD domain VA208B3_21770 PF13145 PPIC-type PPIASE domain VA208B3_21780 PF00216 Bacterial DNA-binding protein VA208B3_21790 PF05362 Lon protease (S16) C-terminal proteolytic domain VA208B3_21790 PF02190 ATP-dependent protease La (LON) substrate-binding domain VA208B3_21790 PF00004 ATPase family associated with various cellular activities (AAA) VA208B3_21800 PF06689 ClpX C4-type zinc finger VA208B3_21800 PF10431 C-terminal, D2-small domain, of ClpB protein VA208B3_21800 PF07724 AAA domain (Cdc48 subfamily) VA208B3_21810 PF00574 Clp protease VA208B3_21820 PF05697 Bacterial trigger factor protein (TF) VA208B3_21820 PF05698 Bacterial trigger factor protein (TF) C-terminus VA208B3_21820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA208B3_21840 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_21840 PF02743 Cache domain VA208B3_21840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_21850 PF00072 Response regulator receiver domain VA208B3_21850 PF02954 Bacterial regulatory protein, Fis family VA208B3_21850 PF00158 Sigma-54 interaction domain VA208B3_21870 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VA208B3_21880 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VA208B3_21890 PF03480 Bacterial extracellular solute-binding protein, family 7 VA208B3_21900 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VA208B3_21930 PF02386 Cation transport protein VA208B3_21940 PF02254 TrkA-N domain VA208B3_21940 PF02080 TrkA-C domain VA208B3_21950 PF00271 Helicase conserved C-terminal domain VA208B3_21950 PF00270 DEAD/DEAH box helicase VA208B3_21960 PF00571 CBS domain VA208B3_21960 PF01595 Cyclin M transmembrane N-terminal domain VA208B3_21960 PF03471 Transporter associated domain VA208B3_21980 PF04820 Tryptophan halogenase VA208B3_22030 PF00550 Phosphopantetheine attachment site VA208B3_22040 PF00550 Phosphopantetheine attachment site VA208B3_22060 PF00501 AMP-binding enzyme VA208B3_22060 PF13193 AMP-binding enzyme C-terminal domain VA208B3_22070 PF07977 FabA-like domain VA208B3_22080 PF00535 Glycosyl transferase family 2 VA208B3_22090 PF00221 Aromatic amino acid lyase VA208B3_22140 PF00109 Beta-ketoacyl synthase, N-terminal domain VA208B3_22140 PF02801 Beta-ketoacyl synthase, C-terminal domain VA208B3_22150 PF07977 FabA-like domain VA208B3_22170 PF02801 Beta-ketoacyl synthase, C-terminal domain VA208B3_22170 PF00109 Beta-ketoacyl synthase, N-terminal domain VA208B3_22200 PF13657 HipA N-terminal domain VA208B3_22200 PF07804 HipA-like C-terminal domain VA208B3_22210 PF01381 Helix-turn-helix VA208B3_22220 PF13538 UvrD-like helicase C-terminal domain VA208B3_22230 PF13737 Transposase DDE domain VA208B3_22300 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VA208B3_22300 PF04851 Type III restriction enzyme, res subunit VA208B3_22300 PF08463 EcoEI R protein C-terminal VA208B3_22300 PF00271 Helicase conserved C-terminal domain VA208B3_22320 PF01555 DNA methylase VA208B3_22360 PF12161 HsdM N-terminal domain VA208B3_22360 PF02384 N-6 DNA Methylase VA208B3_22370 PF01420 Type I restriction modification DNA specificity domain VA208B3_22430 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VA208B3_22430 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VA208B3_22440 PF07662 Na+ dependent nucleoside transporter C-terminus VA208B3_22440 PF01773 Na+ dependent nucleoside transporter N-terminus VA208B3_22440 PF07670 Nucleoside recognition VA208B3_22450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_22450 PF03466 LysR substrate binding domain VA208B3_22460 PF13406 Transglycosylase SLT domain VA208B3_22470 PF05166 YcgL domain VA208B3_22480 PF03775 Septum formation inhibitor MinC, C-terminal domain VA208B3_22480 PF05209 Septum formation inhibitor MinC, N-terminal domain VA208B3_22490 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VA208B3_22500 PF03776 Septum formation topological specificity factor MinE VA208B3_22510 PF01612 3'-5' exonuclease VA208B3_22510 PF00570 HRDC domain VA208B3_22520 PF00501 AMP-binding enzyme VA208B3_22520 PF13193 AMP-binding enzyme C-terminal domain VA208B3_22530 PF00561 alpha/beta hydrolase fold VA208B3_22560 PF00814 Glycoprotease family VA208B3_22570 PF13307 Helicase C-terminal domain VA208B3_22570 PF04851 Type III restriction enzyme, res subunit VA208B3_22580 PF01842 ACT domain VA208B3_22580 PF00551 Formyl transferase VA208B3_22590 PF06185 YecM protein VA208B3_22600 PF00750 tRNA synthetases class I (R) VA208B3_22600 PF05746 DALR anticodon binding domain VA208B3_22600 PF03485 Arginyl tRNA synthetase N terminal domain VA208B3_22630 PF07664 Ferrous iron transport protein B C terminus VA208B3_22630 PF17910 FeoB cytosolic helical domain VA208B3_22630 PF02421 Ferrous iron transport protein B VA208B3_22630 PF07670 Nucleoside recognition VA208B3_22640 PF04023 FeoA domain VA208B3_22660 PF02311 AraC-like ligand binding domain VA208B3_22660 PF12833 Helix-turn-helix domain VA208B3_22670 PF01297 Zinc-uptake complex component A periplasmic VA208B3_22680 PF00005 ABC transporter VA208B3_22690 PF00950 ABC 3 transport family VA208B3_22700 PF13230 Glutamine amidotransferases class-II VA208B3_22710 PF13580 SIS domain VA208B3_22720 PF02770 Acyl-CoA dehydrogenase, middle domain VA208B3_22720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA208B3_22720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA208B3_22720 PF09317 Domain of unknown function (DUF1974) VA208B3_22730 PF00916 Sulfate permease family VA208B3_22730 PF01740 STAS domain VA208B3_22740 PF00583 Acetyltransferase (GNAT) family VA208B3_22780 PF00929 Exonuclease VA208B3_22790 PF00075 RNase H VA208B3_22800 PF08241 Methyltransferase domain VA208B3_22810 PF16123 Hydroxyacylglutathione hydrolase C-terminus VA208B3_22810 PF00753 Metallo-beta-lactamase superfamily VA208B3_22820 PF01476 LysM domain VA208B3_22820 PF01464 Transglycosylase SLT domain VA208B3_22840 PF03372 Endonuclease/Exonuclease/phosphatase family VA208B3_22850 PF00543 Nitrogen regulatory protein P-II VA208B3_22860 PF00034 Cytochrome c VA208B3_22870 PF01171 PP-loop family VA208B3_22870 PF09179 TilS substrate binding domain VA208B3_22870 PF11734 TilS substrate C-terminal domain VA208B3_22880 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VA208B3_22890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA208B3_22890 PF01336 OB-fold nucleic acid binding domain VA208B3_22890 PF14579 Helix-hairpin-helix motif VA208B3_22890 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA208B3_22890 PF02811 PHP domain VA208B3_22900 PF01351 Ribonuclease HII VA208B3_22910 PF02684 Lipid-A-disaccharide synthetase VA208B3_22920 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VA208B3_22920 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_22930 PF07977 FabA-like domain VA208B3_22940 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_22940 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VA208B3_22950 PF03938 Outer membrane protein (OmpH-like) VA208B3_22960 PF01103 Surface antigen VA208B3_22960 PF07244 Surface antigen variable number repeat VA208B3_22970 PF17820 PDZ domain VA208B3_22970 PF02163 Peptidase family M50 VA208B3_22980 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VA208B3_22980 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VA208B3_22980 PF13288 DXP reductoisomerase C-terminal domain VA208B3_23000 PF01255 Putative undecaprenyl diphosphate synthase VA208B3_23010 PF01765 Ribosome recycling factor VA208B3_23020 PF00696 Amino acid kinase family VA208B3_23030 PF00889 Elongation factor TS VA208B3_23040 PF00318 Ribosomal protein S2 VA208B3_23050 PF00557 Metallopeptidase family M24 VA208B3_23060 PF01909 Nucleotidyltransferase domain VA208B3_23060 PF01966 HD domain VA208B3_23060 PF08335 GlnD PII-uridylyltransferase VA208B3_23060 PF01842 ACT domain VA208B3_23070 PF11944 Protein of unknown function (DUF3461) VA208B3_23080 PF00849 RNA pseudouridylate synthase VA208B3_23090 PF04287 tRNA pseudouridine synthase C VA208B3_23130 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VA208B3_23140 PF03806 AbgT putative transporter family VA208B3_23160 PF01197 Ribosomal protein L31 VA208B3_23170 PF01980 tRNA-methyltransferase O VA208B3_23170 PF18389 TrmO C-terminal domain VA208B3_23180 PF04073 Aminoacyl-tRNA editing domain VA208B3_23180 PF03129 Anticodon binding domain VA208B3_23180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VA208B3_23200 PF06786 Uncharacterised protein family (UPF0253) VA208B3_23220 PF00209 Sodium:neurotransmitter symporter family VA208B3_23250 PF03449 Transcription elongation factor, N-terminal VA208B3_23250 PF01272 Transcription elongation factor, GreA/GreB, C-term VA208B3_23260 PF00570 HRDC domain VA208B3_23260 PF16124 RecQ zinc-binding VA208B3_23260 PF00271 Helicase conserved C-terminal domain VA208B3_23260 PF09382 RQC domain VA208B3_23260 PF00270 DEAD/DEAH box helicase VA208B3_23270 PF00817 impB/mucB/samB family VA208B3_23270 PF11799 impB/mucB/samB family C-terminal domain VA208B3_23270 PF11798 IMS family HHH motif VA208B3_23300 PF02424 ApbE family VA208B3_23310 PF00970 Oxidoreductase FAD-binding domain VA208B3_23310 PF00111 2Fe-2S iron-sulfur cluster binding domain VA208B3_23310 PF00175 Oxidoreductase NAD-binding domain VA208B3_23320 PF02508 Rnf-Nqr subunit, membrane protein VA208B3_23330 PF02508 Rnf-Nqr subunit, membrane protein VA208B3_23340 PF04205 FMN-binding domain VA208B3_23350 PF03116 NQR2, RnfD, RnfE family VA208B3_23360 PF11973 NQRA C-terminal domain VA208B3_23360 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VA208B3_23380 PF01722 BolA-like protein VA208B3_23390 PF05175 Methyltransferase small domain VA208B3_23400 PF03923 Uncharacterized lipoprotein VA208B3_23400 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VA208B3_23410 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA208B3_23420 PF07690 Major Facilitator Superfamily VA208B3_23440 PF04542 Sigma-70 region 2 VA208B3_23440 PF04545 Sigma-70, region 4 VA208B3_23480 PF03502 Nucleoside-specific channel-forming protein, Tsx VA208B3_23490 PF08546 Ketopantoate reductase PanE/ApbA C terminal VA208B3_23490 PF02558 Ketopantoate reductase PanE/ApbA VA208B3_23500 PF01965 DJ-1/PfpI family VA208B3_23510 PF00266 Aminotransferase class-V VA208B3_23520 PF17158 Membrane-associated sensor, integral membrane domain VA208B3_23520 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_23530 PF02657 Fe-S metabolism associated domain VA208B3_23540 PF00899 ThiF family VA208B3_23550 PF03562 MltA specific insert domain VA208B3_23550 PF06725 3D domain VA208B3_23570 PF00583 Acetyltransferase (GNAT) family VA208B3_23570 PF00696 Amino acid kinase family VA208B3_23590 PF13538 UvrD-like helicase C-terminal domain VA208B3_23600 PF13361 UvrD-like helicase C-terminal domain VA208B3_23600 PF00580 UvrD/REP helicase N-terminal domain VA208B3_23600 PF12705 PD-(D/E)XK nuclease superfamily VA208B3_23610 PF17946 RecC C-terminal domain VA208B3_23620 PF11893 Domain of unknown function (DUF3413) VA208B3_23620 PF00884 Sulfatase VA208B3_23640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_23640 PF03466 LysR substrate binding domain VA208B3_23650 PF07130 YebG protein VA208B3_23660 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VA208B3_23660 PF14602 Hexapeptide repeat of succinyl-transferase VA208B3_23670 PF03009 Glycerophosphoryl diester phosphodiesterase family VA208B3_23680 PF07690 Major Facilitator Superfamily VA208B3_23690 PF00230 Major intrinsic protein VA208B3_23700 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA208B3_23700 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA208B3_23710 PF00455 DeoR C terminal sensor domain VA208B3_23710 PF08220 DeoR-like helix-turn-helix domain VA208B3_23720 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VA208B3_23720 PF01266 FAD dependent oxidoreductase VA208B3_23730 PF01544 CorA-like Mg2+ transporter protein VA208B3_23770 PF01588 Putative tRNA binding domain VA208B3_23780 PF00356 Bacterial regulatory proteins, lacI family VA208B3_23810 PF00356 Bacterial regulatory proteins, lacI family VA208B3_23820 PF01263 Aldose 1-epimerase VA208B3_23830 PF00288 GHMP kinases N terminal domain VA208B3_23830 PF10509 Galactokinase galactose-binding signature VA208B3_23830 PF08544 GHMP kinases C terminal VA208B3_23840 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VA208B3_23840 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VA208B3_23850 PF16363 GDP-mannose 4,6 dehydratase VA208B3_23860 PF00356 Bacterial regulatory proteins, lacI family VA208B3_23870 PF16353 Domain of unknown function(DUF4981) VA208B3_23870 PF00703 Glycosyl hydrolases family 2 VA208B3_23870 PF02929 Beta galactosidase small chain VA208B3_23870 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA208B3_23870 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA208B3_23880 PF04074 YhcH/YjgK/YiaL VA208B3_23890 PF13520 Amino acid permease VA208B3_23940 PF00691 OmpA family VA208B3_23940 PF05736 OprF membrane domain VA208B3_24010 PF00437 Type II/IV secretion system protein VA208B3_24040 PF04972 BON domain VA208B3_24040 PF00263 Bacterial type II and III secretion system protein VA208B3_24040 PF13629 Pilus formation protein N terminal region VA208B3_24070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_24070 PF03466 LysR substrate binding domain VA208B3_24080 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VA208B3_24080 PF01464 Transglycosylase SLT domain VA208B3_24090 PF00196 Bacterial regulatory proteins, luxR family VA208B3_24150 PF00501 AMP-binding enzyme VA208B3_24170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_24170 PF03466 LysR substrate binding domain VA208B3_24180 PF03764 Elongation factor G, domain IV VA208B3_24180 PF14492 Elongation Factor G, domain II VA208B3_24180 PF03144 Elongation factor Tu domain 2 VA208B3_24180 PF00009 Elongation factor Tu GTP binding domain VA208B3_24180 PF00679 Elongation factor G C-terminus VA208B3_24190 PF18073 Rubredoxin metal binding domain VA208B3_24210 PF18429 Domain of unknown function (DUF5609) VA208B3_24230 PF01048 Phosphorylase superfamily VA208B3_24240 PF01676 Metalloenzyme superfamily VA208B3_24250 PF02885 Glycosyl transferase family, helical bundle domain VA208B3_24250 PF00591 Glycosyl transferase family, a/b domain VA208B3_24250 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VA208B3_24260 PF01791 DeoC/LacD family aldolase VA208B3_24270 PF07662 Na+ dependent nucleoside transporter C-terminus VA208B3_24270 PF01773 Na+ dependent nucleoside transporter N-terminus VA208B3_24270 PF07670 Nucleoside recognition VA208B3_24280 PF01026 TatD related DNase VA208B3_24300 PF00009 Elongation factor Tu GTP binding domain VA208B3_24300 PF16658 Class II release factor RF3, C-terminal domain VA208B3_24300 PF03144 Elongation factor Tu domain 2 VA208B3_24340 PF13508 Acetyltransferase (GNAT) domain VA208B3_24350 PF02036 SCP-2 sterol transfer family VA208B3_24360 PF03707 Bacterial signalling protein N terminal repeat VA208B3_24360 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_24360 PF00563 EAL domain VA208B3_24370 PF01136 Peptidase family U32 VA208B3_24380 PF01136 Peptidase family U32 VA208B3_24390 PF01554 MatE VA208B3_24410 PF07719 Tetratricopeptide repeat VA208B3_24410 PF13181 Tetratricopeptide repeat VA208B3_24420 PF01138 3' exoribonuclease family, domain 1 VA208B3_24420 PF00575 S1 RNA binding domain VA208B3_24420 PF03725 3' exoribonuclease family, domain 2 VA208B3_24420 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VA208B3_24420 PF00013 KH domain VA208B3_24430 PF00312 Ribosomal protein S15 VA208B3_24440 PF09157 Pseudouridine synthase II TruB, C-terminal VA208B3_24440 PF16198 tRNA pseudouridylate synthase B C-terminal domain VA208B3_24440 PF01509 TruB family pseudouridylate synthase (N terminal domain) VA208B3_24450 PF02033 Ribosome-binding factor A VA208B3_24460 PF04760 Translation initiation factor IF-2, N-terminal region VA208B3_24460 PF00009 Elongation factor Tu GTP binding domain VA208B3_24460 PF11987 Translation-initiation factor 2 VA208B3_24460 PF08364 Bacterial translation initiation factor IF-2 associated region VA208B3_24470 PF00575 S1 RNA binding domain VA208B3_24470 PF08529 NusA N-terminal domain VA208B3_24470 PF13184 NusA-like KH domain VA208B3_24480 PF02576 RimP N-terminal domain VA208B3_24480 PF17384 RimP C-terminal SH3 domain VA208B3_24490 PF03840 Preprotein translocase SecG subunit VA208B3_24500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA208B3_24500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA208B3_24500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA208B3_24500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA208B3_24510 PF00809 Pterin binding enzyme VA208B3_24520 PF06480 FtsH Extracellular VA208B3_24520 PF01434 Peptidase family M41 VA208B3_24520 PF17862 AAA+ lid domain VA208B3_24520 PF00004 ATPase family associated with various cellular activities (AAA) VA208B3_24530 PF01728 FtsJ-like methyltransferase VA208B3_24540 PF01985 CRS1 / YhbY (CRM) domain VA208B3_24550 PF03449 Transcription elongation factor, N-terminal VA208B3_24550 PF01272 Transcription elongation factor, GreA/GreB, C-term VA208B3_24560 PF13609 Gram-negative porin VA208B3_24570 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VA208B3_24590 PF00579 tRNA synthetases class I (W and Y) VA208B3_24600 PF01551 Peptidase family M23 VA208B3_24600 PF08525 Opacity-associated protein A N-terminal motif VA208B3_24600 PF01476 LysM domain VA208B3_24610 PF00873 AcrB/AcrD/AcrF family VA208B3_24630 PF01521 Iron-sulphur cluster biosynthesis VA208B3_24640 PF00202 Aminotransferase class-III VA208B3_24650 PF01594 AI-2E family transporter VA208B3_24660 PF08468 Methyltransferase small domain N-terminal VA208B3_24660 PF05175 Methyltransferase small domain VA208B3_24670 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_24670 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_24670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_24670 PF00072 Response regulator receiver domain VA208B3_24680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_24690 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_24700 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_24700 PF12911 N-terminal TM domain of oligopeptide transport permease C VA208B3_24710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_24710 PF00005 ABC transporter VA208B3_24720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_24720 PF00005 ABC transporter VA208B3_24740 PF01869 BadF/BadG/BcrA/BcrD ATPase family VA208B3_24750 PF02838 Glycosyl hydrolase family 20, domain 2 VA208B3_24750 PF00728 Glycosyl hydrolase family 20, catalytic domain VA208B3_24760 PF06165 Glycosyltransferase family 36 VA208B3_24760 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VA208B3_24770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA208B3_24770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA208B3_24770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA208B3_24770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA208B3_24780 PF00005 ABC transporter VA208B3_24780 PF08402 TOBE domain VA208B3_24800 PF13416 Bacterial extracellular solute-binding protein VA208B3_24810 PF00909 Ammonium Transporter Family VA208B3_24820 PF00543 Nitrogen regulatory protein P-II VA208B3_24830 PF06062 Uncharacterised protein family (UPF0231) VA208B3_24840 PF00330 Aconitase family (aconitate hydratase) VA208B3_24840 PF06434 Aconitate hydratase 2 N-terminus VA208B3_24840 PF11791 Aconitate B N-terminal domain VA208B3_24850 PF01734 Patatin-like phospholipase VA208B3_24860 PF00912 Transglycosylase VA208B3_24860 PF14814 Bifunctional transglycosylase second domain VA208B3_24860 PF00905 Penicillin binding protein transpeptidase domain VA208B3_24870 PF08482 ATP-dependent helicase C-terminal VA208B3_24870 PF00270 DEAD/DEAH box helicase VA208B3_24870 PF04408 Helicase associated domain (HA2) VA208B3_24870 PF00271 Helicase conserved C-terminal domain VA208B3_24880 PF03749 Sugar fermentation stimulation protein RE domain VA208B3_24880 PF17746 SfsA N-terminal OB domain VA208B3_24890 PF01258 Prokaryotic dksA/traR C4-type zinc finger VA208B3_24900 PF00749 tRNA synthetases class I (E and Q), catalytic domain VA208B3_24910 PF12627 Probable RNA and SrmB- binding site of polymerase A VA208B3_24910 PF01743 Poly A polymerase head domain VA208B3_24910 PF12626 Polymerase A arginine-rich C-terminus VA208B3_24920 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VA208B3_24930 PF02548 Ketopantoate hydroxymethyltransferase VA208B3_24940 PF02569 Pantoate-beta-alanine ligase VA208B3_24950 PF03279 Bacterial lipid A biosynthesis acyltransferase VA208B3_24960 PF01061 ABC-2 type transporter VA208B3_24970 PF00005 ABC transporter VA208B3_24980 PF01740 STAS domain VA208B3_24980 PF00916 Sulfate permease family VA208B3_24990 PF00484 Carbonic anhydrase VA208B3_25000 PF00156 Phosphoribosyl transferase domain VA208B3_25010 PF00440 Bacterial regulatory proteins, tetR family VA208B3_25020 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_25020 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA208B3_25030 PF02817 e3 binding domain VA208B3_25030 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA208B3_25030 PF00364 Biotin-requiring enzyme VA208B3_25040 PF17831 Pyruvate dehydrogenase E1 component middle domain VA208B3_25040 PF00456 Transketolase, thiamine diphosphate binding domain VA208B3_25050 PF07729 FCD domain VA208B3_25050 PF00392 Bacterial regulatory proteins, gntR family VA208B3_25060 PF01510 N-acetylmuramoyl-L-alanine amidase VA208B3_25070 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VA208B3_25070 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VA208B3_25080 PF07963 Prokaryotic N-terminal methylation motif VA208B3_25080 PF00114 Pilin (bacterial filament) VA208B3_25090 PF00437 Type II/IV secretion system protein VA208B3_25090 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VA208B3_25100 PF00482 Type II secretion system (T2SS), protein F VA208B3_25110 PF06750 Bacterial Peptidase A24 N-terminal domain VA208B3_25110 PF01478 Type IV leader peptidase family VA208B3_25120 PF01121 Dephospho-CoA kinase VA208B3_25130 PF07072 Cell division protein VA208B3_25140 PF03884 DNA gyrase inhibitor YacG VA208B3_25150 PF01245 Ribosomal protein L19 VA208B3_25160 PF01746 tRNA (Guanine-1)-methyltransferase VA208B3_25170 PF05239 PRC-barrel domain VA208B3_25170 PF01782 RimM N-terminal domain VA208B3_25180 PF00886 Ribosomal protein S16 VA208B3_25190 PF00448 SRP54-type protein, GTPase domain VA208B3_25190 PF02881 SRP54-type protein, helical bundle domain VA208B3_25190 PF02978 Signal peptide binding domain VA208B3_25200 PF01578 Cytochrome C assembly protein VA208B3_25210 PF00571 CBS domain VA208B3_25210 PF01595 Cyclin M transmembrane N-terminal domain VA208B3_25210 PF03471 Transporter associated domain VA208B3_25220 PF02664 S-Ribosylhomocysteinase (LuxS) VA208B3_25240 PF04262 Glutamate-cysteine ligase VA208B3_25250 PF00675 Insulinase (Peptidase family M16) VA208B3_25250 PF05193 Peptidase M16 inactive domain VA208B3_25260 PF09335 SNARE associated Golgi protein VA208B3_25270 PF08240 Alcohol dehydrogenase GroES-like domain VA208B3_25270 PF00107 Zinc-binding dehydrogenase VA208B3_25280 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VA208B3_25290 PF00364 Biotin-requiring enzyme VA208B3_25290 PF00682 HMGL-like VA208B3_25290 PF02436 Conserved carboxylase domain VA208B3_25300 PF04277 Oxaloacetate decarboxylase, gamma chain VA208B3_25310 PF02599 Global regulator protein family VA208B3_25320 PF01842 ACT domain VA208B3_25320 PF13840 ACT domain VA208B3_25320 PF00696 Amino acid kinase family VA208B3_25330 PF02272 DHHA1 domain VA208B3_25330 PF01411 tRNA synthetases class II (A) VA208B3_25330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VA208B3_25340 PF02631 RecX family VA208B3_25350 PF00154 recA bacterial DNA recombination protein VA208B3_25360 PF02464 Competence-damaged protein VA208B3_25370 PF05188 MutS domain II VA208B3_25370 PF05192 MutS domain III VA208B3_25370 PF05190 MutS family domain IV VA208B3_25370 PF00488 MutS domain V VA208B3_25370 PF01624 MutS domain I VA208B3_25380 PF04539 Sigma-70 region 3 VA208B3_25380 PF04545 Sigma-70, region 4 VA208B3_25380 PF00140 Sigma-70 factor, region 1.2 VA208B3_25380 PF04542 Sigma-70 region 2 VA208B3_25390 PF01476 LysM domain VA208B3_25390 PF01551 Peptidase family M23 VA208B3_25410 PF01975 Survival protein SurE VA208B3_25420 PF01142 tRNA pseudouridine synthase D (TruD) VA208B3_25430 PF02542 YgbB family VA208B3_25440 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VA208B3_25450 PF04977 Septum formation initiator VA208B3_25460 PF00113 Enolase, C-terminal TIM barrel domain VA208B3_25460 PF03952 Enolase, N-terminal domain VA208B3_25470 PF06418 CTP synthase N-terminus VA208B3_25470 PF00117 Glutamine amidotransferase class-I VA208B3_25480 PF03819 MazG nucleotide pyrophosphohydrolase domain VA208B3_25490 PF13291 ACT domain VA208B3_25490 PF04607 Region found in RelA / SpoT proteins VA208B3_25490 PF02824 TGS domain VA208B3_25500 PF01938 TRAM domain VA208B3_25500 PF05958 tRNA (Uracil-5-)-methyltransferase VA208B3_25510 PF00072 Response regulator receiver domain VA208B3_25510 PF00672 HAMP domain VA208B3_25510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_25510 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_25510 PF01627 Hpt domain VA208B3_25510 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VA208B3_25520 PF01648 4'-phosphopantetheinyl transferase superfamily VA208B3_25530 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VA208B3_25540 PF11967 Recombination protein O N terminal VA208B3_25540 PF02565 Recombination protein O C terminal VA208B3_25550 PF07650 KH domain VA208B3_25550 PF01926 50S ribosome-binding GTPase VA208B3_25560 PF00035 Double-stranded RNA binding motif VA208B3_25560 PF14622 Ribonuclease-III-like VA208B3_25570 PF10502 Signal peptidase, peptidase S26 VA208B3_25580 PF00009 Elongation factor Tu GTP binding domain VA208B3_25580 PF03144 Elongation factor Tu domain 2 VA208B3_25580 PF00679 Elongation factor G C-terminus VA208B3_25580 PF06421 GTP-binding protein LepA C-terminus VA208B3_25600 PF17188 MucB/RseB C-terminal domain VA208B3_25600 PF03888 MucB/RseB N-terminal domain VA208B3_25610 PF03873 Anti sigma-E protein RseA, C-terminal domain VA208B3_25610 PF03872 Anti sigma-E protein RseA, N-terminal domain VA208B3_25620 PF04542 Sigma-70 region 2 VA208B3_25620 PF08281 Sigma-70, region 4 VA208B3_25630 PF00890 FAD binding domain VA208B3_25630 PF02910 Fumarate reductase flavoprotein C-term VA208B3_25650 PF03937 Flavinator of succinate dehydrogenase VA208B3_25660 PF01571 Aminomethyltransferase folate-binding domain VA208B3_25690 PF01494 FAD binding domain VA208B3_25700 PF01494 FAD binding domain VA208B3_25710 PF03695 Uncharacterised protein family (UPF0149) VA208B3_25720 PF05164 Cell division protein ZapA VA208B3_25730 PF01812 5-formyltetrahydrofolate cyclo-ligase family VA208B3_25740 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VA208B3_25750 PF01842 ACT domain VA208B3_25750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA208B3_25750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA208B3_25760 PF04402 Protein of unknown function (DUF541) VA208B3_25770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_25770 PF03466 LysR substrate binding domain VA208B3_25780 PF01810 LysE type translocator VA208B3_25790 PF04073 Aminoacyl-tRNA editing domain VA208B3_25800 PF00924 Mechanosensitive ion channel VA208B3_25800 PF05552 Conserved TM helix VA208B3_25810 PF01116 Fructose-bisphosphate aldolase class-II VA208B3_25820 PF00162 Phosphoglycerate kinase VA208B3_25830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA208B3_25830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA208B3_25840 PF07715 TonB-dependent Receptor Plug Domain VA208B3_25840 PF00593 TonB dependent receptor VA208B3_25850 PF03466 LysR substrate binding domain VA208B3_25850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_25860 PF02780 Transketolase, C-terminal domain VA208B3_25860 PF00456 Transketolase, thiamine diphosphate binding domain VA208B3_25860 PF02779 Transketolase, pyrimidine binding domain VA208B3_25880 PF02773 S-adenosylmethionine synthetase, C-terminal domain VA208B3_25880 PF02772 S-adenosylmethionine synthetase, central domain VA208B3_25880 PF00438 S-adenosylmethionine synthetase, N-terminal domain VA208B3_25900 PF17283 SprT-like zinc ribbon domain VA208B3_25900 PF10263 SprT-like family VA208B3_25910 PF04231 Endonuclease I VA208B3_25920 PF04452 RNA methyltransferase VA208B3_25930 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VA208B3_25930 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VA208B3_25940 PF02622 Uncharacterized ACR, COG1678 VA208B3_25950 PF03652 Holliday junction resolvase VA208B3_25960 PF00437 Type II/IV secretion system protein VA208B3_25970 PF00437 Type II/IV secretion system protein VA208B3_25980 PF01168 Alanine racemase, N-terminal domain VA208B3_25990 PF14748 Pyrroline-5-carboxylate reductase dimerisation VA208B3_25990 PF03807 NADP oxidoreductase coenzyme F420-dependent VA208B3_26000 PF02325 YGGT family VA208B3_26010 PF02594 Uncharacterised ACR, YggU family COG1872 VA208B3_26030 PF01725 Ham1 family VA208B3_26040 PF04055 Radical SAM superfamily VA208B3_26040 PF06969 HemN C-terminal domain VA208B3_26050 PF04960 Glutaminase VA208B3_26060 PF02086 D12 class N6 adenine-specific DNA methyltransferase VA208B3_26070 PF02390 Putative methyltransferase VA208B3_26080 PF14815 NUDIX domain VA208B3_26080 PF00633 Helix-hairpin-helix motif VA208B3_26080 PF00730 HhH-GPD superfamily base excision DNA repair protein VA208B3_26090 PF04362 Bacterial Fe(2+) trafficking VA208B3_26100 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VA208B3_26100 PF01464 Transglycosylase SLT domain VA208B3_26110 PF17200 Single Cache domain 2 VA208B3_26110 PF00672 HAMP domain VA208B3_26110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_26120 PF00171 Aldehyde dehydrogenase family VA208B3_26130 PF00072 Response regulator receiver domain VA208B3_26140 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA208B3_26140 PF00356 Bacterial regulatory proteins, lacI family VA208B3_26150 PF04794 YdjC-like protein VA208B3_26160 PF02056 Family 4 glycosyl hydrolase VA208B3_26160 PF11975 Family 4 glycosyl hydrolase C-terminal domain VA208B3_26170 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VA208B3_26180 PF02378 Phosphotransferase system, EIIC VA208B3_26200 PF01522 Polysaccharide deacetylase VA208B3_26210 PF00106 short chain dehydrogenase VA208B3_26220 PF10011 Predicted membrane protein (DUF2254) VA208B3_26240 PF03739 Lipopolysaccharide export system permease LptF/LptG VA208B3_26250 PF03739 Lipopolysaccharide export system permease LptF/LptG VA208B3_26260 PF00883 Cytosol aminopeptidase family, catalytic domain VA208B3_26260 PF02789 Cytosol aminopeptidase family, N-terminal domain VA208B3_26270 PF04364 DNA polymerase III chi subunit, HolC VA208B3_26280 PF10458 Valyl tRNA synthetase tRNA binding arm VA208B3_26280 PF00133 tRNA synthetases class I (I, L, M and V) VA208B3_26280 PF08264 Anticodon-binding domain of tRNA VA208B3_26300 PF00583 Acetyltransferase (GNAT) family VA208B3_26320 PF06877 Regulator of ribonuclease activity B VA208B3_26340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VA208B3_26340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VA208B3_26350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VA208B3_26350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VA208B3_26360 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VA208B3_26360 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VA208B3_26370 PF01042 Endoribonuclease L-PSP VA208B3_26380 PF01553 Acyltransferase VA208B3_26390 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VA208B3_26400 PF01722 BolA-like protein VA208B3_26420 PF05494 MlaC protein VA208B3_26430 PF02470 MlaD protein VA208B3_26440 PF02405 Permease MlaE VA208B3_26450 PF00005 ABC transporter VA208B3_26460 PF01699 Sodium/calcium exchanger protein VA208B3_26470 PF00571 CBS domain VA208B3_26470 PF01380 SIS domain VA208B3_26490 PF03968 OstA-like protein VA208B3_26500 PF00005 ABC transporter VA208B3_26500 PF12399 Branched-chain amino acid ATP-binding cassette transporter VA208B3_26510 PF00309 Sigma-54 factor, Activator interacting domain (AID) VA208B3_26510 PF04963 Sigma-54 factor, core binding domain VA208B3_26510 PF04552 Sigma-54, DNA binding domain VA208B3_26520 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VA208B3_26530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA208B3_26540 PF03668 P-loop ATPase protein family VA208B3_26550 PF00381 PTS HPr component phosphorylation site VA208B3_26560 PF01769 Divalent cation transporter VA208B3_26560 PF03448 MgtE intracellular N domain VA208B3_26560 PF00571 CBS domain VA208B3_26570 PF01523 Putative modulator of DNA gyrase VA208B3_26580 PF04751 Protein of unknown function (DUF615) VA208B3_26590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA208B3_26590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA208B3_26600 PF00849 RNA pseudouridylate synthase VA208B3_26620 PF00271 Helicase conserved C-terminal domain VA208B3_26620 PF12137 RNA polymerase recycling family C-terminal VA208B3_26620 PF00176 SNF2 family N-terminal domain VA208B3_26620 PF18339 RapA N-terminal Tudor like domain 1 VA208B3_26620 PF18337 RapA N-terminal Tudor like domain VA208B3_26630 PF13638 PIN domain VA208B3_26630 PF02562 PhoH-like protein VA208B3_26640 PF01523 Putative modulator of DNA gyrase VA208B3_26650 PF00795 Carbon-nitrogen hydrolase VA208B3_26660 PF13502 AsmA-like C-terminal region VA208B3_26660 PF13116 Protein of unknown function VA208B3_26670 PF10150 Ribonuclease E/G family VA208B3_26670 PF00575 S1 RNA binding domain VA208B3_26680 PF02545 Maf-like protein VA208B3_26690 PF04093 rod shape-determining protein MreD VA208B3_26700 PF04085 rod shape-determining protein MreC VA208B3_26780 PF07963 Prokaryotic N-terminal methylation motif VA208B3_26800 PF00482 Type II secretion system (T2SS), protein F VA208B3_26810 PF00437 Type II/IV secretion system protein VA208B3_26810 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VA208B3_26830 PF13401 AAA domain VA208B3_26830 PF01471 Putative peptidoglycan binding domain VA208B3_26840 PF07660 Secretin and TonB N terminus short domain VA208B3_26840 PF03958 Bacterial type II/III secretion system short domain VA208B3_26840 PF11741 AMIN domain VA208B3_26840 PF00263 Bacterial type II and III secretion system protein VA208B3_26890 PF00563 EAL domain VA208B3_26890 PF17157 Gammaproteobacterial periplasmic sensor domain VA208B3_26890 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_26900 PF00436 Single-strand binding protein family VA208B3_26910 PF00196 Bacterial regulatory proteins, luxR family VA208B3_26920 PF00483 Nucleotidyl transferase VA208B3_26930 PF00005 ABC transporter VA208B3_26930 PF17755 UvrA DNA-binding domain VA208B3_26930 PF17760 UvrA interaction domain VA208B3_26950 PF00266 Aminotransferase class-V VA208B3_26960 PF01842 ACT domain VA208B3_26960 PF00696 Amino acid kinase family VA208B3_26970 PF02310 B12 binding domain VA208B3_26970 PF00809 Pterin binding enzyme VA208B3_26970 PF02574 Homocysteine S-methyltransferase VA208B3_26970 PF02965 Vitamin B12 dependent methionine synthase, activation domain VA208B3_26970 PF02607 B12 binding domain VA208B3_26980 PF00999 Sodium/hydrogen exchanger family VA208B3_26990 PF01507 Phosphoadenosine phosphosulfate reductase family VA208B3_27000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA208B3_27000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA208B3_27010 PF00175 Oxidoreductase NAD-binding domain VA208B3_27010 PF00667 FAD binding domain VA208B3_27010 PF00258 Flavodoxin VA208B3_27050 PF01207 Dihydrouridine synthase (Dus) VA208B3_27120 PF00239 Resolvase, N terminal domain VA208B3_27120 PF02796 Helix-turn-helix domain of resolvase VA208B3_27220 PF06122 Conjugative relaxosome accessory transposon protein VA208B3_27350 PF01475 Ferric uptake regulator family VA208B3_27370 PF00342 Phosphoglucose isomerase VA208B3_27380 PF01894 Uncharacterised protein family UPF0047 VA208B3_27400 PF01168 Alanine racemase, N-terminal domain VA208B3_27400 PF00842 Alanine racemase, C-terminal domain VA208B3_27410 PF00772 DnaB-like helicase N terminal domain VA208B3_27410 PF03796 DnaB-like helicase C terminal domain VA208B3_27430 PF03948 Ribosomal protein L9, C-terminal domain VA208B3_27430 PF01281 Ribosomal protein L9, N-terminal domain VA208B3_27440 PF01084 Ribosomal protein S18 VA208B3_27450 PF00436 Single-strand binding protein family VA208B3_27460 PF01250 Ribosomal protein S6 VA208B3_27470 PF00834 Ribulose-phosphate 3 epimerase family VA208B3_27480 PF02086 D12 class N6 adenine-specific DNA methyltransferase VA208B3_27500 PF01761 3-dehydroquinate synthase VA208B3_27510 PF01202 Shikimate kinase VA208B3_27520 PF11741 AMIN domain VA208B3_27520 PF07660 Secretin and TonB N terminus short domain VA208B3_27520 PF03958 Bacterial type II/III secretion system short domain VA208B3_27520 PF00263 Bacterial type II and III secretion system protein VA208B3_27530 PF04351 Pilus assembly protein, PilP VA208B3_27550 PF05137 Fimbrial assembly protein (PilN) VA208B3_27570 PF17092 Penicillin-binding protein OB-like domain VA208B3_27570 PF00912 Transglycosylase VA208B3_27570 PF00905 Penicillin binding protein transpeptidase domain VA208B3_27580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_27580 PF03466 LysR substrate binding domain VA208B3_27590 PF00462 Glutaredoxin VA208B3_27590 PF08534 Redoxin VA208B3_27600 PF00583 Acetyltransferase (GNAT) family VA208B3_27600 PF14698 Argininosuccinate lyase C-terminal VA208B3_27600 PF00206 Lyase VA208B3_27610 PF00764 Arginosuccinate synthase VA208B3_27620 PF00696 Amino acid kinase family VA208B3_27630 PF01118 Semialdehyde dehydrogenase, NAD binding domain VA208B3_27630 PF02774 Semialdehyde dehydrogenase, dimerisation domain VA208B3_27640 PF07687 Peptidase dimerisation domain VA208B3_27640 PF01546 Peptidase family M20/M25/M40 VA208B3_27650 PF00311 Phosphoenolpyruvate carboxylase VA208B3_27670 PF02219 Methylenetetrahydrofolate reductase VA208B3_27680 PF00696 Amino acid kinase family VA208B3_27680 PF00742 Homoserine dehydrogenase VA208B3_27680 PF03447 Homoserine dehydrogenase, NAD binding domain VA208B3_27690 PF01053 Cys/Met metabolism PLP-dependent enzyme VA208B3_27700 PF01340 Met Apo-repressor, MetJ VA208B3_27710 PF00390 Malic enzyme, N-terminal domain VA208B3_27710 PF03949 Malic enzyme, NAD binding domain VA208B3_27720 PF00210 Ferritin-like domain VA208B3_27730 PF04324 BFD-like [2Fe-2S] binding domain VA208B3_27740 PF00009 Elongation factor Tu GTP binding domain VA208B3_27740 PF03144 Elongation factor Tu domain 2 VA208B3_27740 PF03143 Elongation factor Tu C-terminal domain VA208B3_27750 PF00679 Elongation factor G C-terminus VA208B3_27750 PF14492 Elongation Factor G, domain II VA208B3_27750 PF03764 Elongation factor G, domain IV VA208B3_27750 PF00009 Elongation factor Tu GTP binding domain VA208B3_27750 PF03144 Elongation factor Tu domain 2 VA208B3_27760 PF00177 Ribosomal protein S7p/S5e VA208B3_27770 PF00164 Ribosomal protein S12/S23 VA208B3_27780 PF04077 DsrH like protein VA208B3_27790 PF02635 DsrE/DsrF-like family VA208B3_27800 PF02635 DsrE/DsrF-like family VA208B3_27810 PF08348 YheO-like PAS domain VA208B3_27810 PF13309 HTH domain VA208B3_27820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA208B3_27820 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA208B3_27840 PF04102 SlyX VA208B3_27850 PF01112 Asparaginase VA208B3_27860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA208B3_27880 PF00999 Sodium/hydrogen exchanger family VA208B3_27880 PF02254 TrkA-N domain VA208B3_27890 PF02525 Flavodoxin-like fold VA208B3_27900 PF00005 ABC transporter VA208B3_27900 PF12848 ABC transporter VA208B3_27920 PF00561 alpha/beta hydrolase fold VA208B3_27930 PF06794 Uncharacterised protein family (UPF0270) VA208B3_27940 PF00485 Phosphoribulokinase / Uridine kinase family VA208B3_27950 PF13545 Crp-like helix-turn-helix domain VA208B3_27950 PF00027 Cyclic nucleotide-binding domain VA208B3_27970 PF00171 Aldehyde dehydrogenase family VA208B3_27980 PF04958 Arginine N-succinyltransferase beta subunit VA208B3_27990 PF00202 Aminotransferase class-III VA208B3_28000 PF00117 Glutamine amidotransferase class-I VA208B3_28030 PF00579 tRNA synthetases class I (W and Y) VA208B3_28040 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_28050 PF00588 SpoU rRNA Methylase family VA208B3_28050 PF08032 RNA 2'-O ribose methyltransferase substrate binding VA208B3_28060 PF17876 Cold shock domain VA208B3_28060 PF08461 Ribonuclease R winged-helix domain VA208B3_28060 PF00773 RNB domain VA208B3_28060 PF08206 Ribonuclease B OB domain VA208B3_28060 PF00575 S1 RNA binding domain VA208B3_28070 PF02082 Transcriptional regulator VA208B3_28080 PF00175 Oxidoreductase NAD-binding domain VA208B3_28080 PF00042 Globin VA208B3_28080 PF00970 Oxidoreductase FAD-binding domain VA208B3_28090 PF08238 Sel1 repeat VA208B3_28100 PF00709 Adenylosuccinate synthetase VA208B3_28110 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VA208B3_28120 PF01145 SPFH domain / Band 7 family VA208B3_28130 PF01145 SPFH domain / Band 7 family VA208B3_28130 PF12221 Bacterial membrane protein N terminal VA208B3_28140 PF16360 GTP-binding GTPase Middle Region VA208B3_28140 PF13167 GTP-binding GTPase N-terminal VA208B3_28140 PF01926 50S ribosome-binding GTPase VA208B3_28150 PF17209 Hfq protein VA208B3_28170 PF08676 MutL C terminal dimerisation domain VA208B3_28170 PF01119 DNA mismatch repair protein, C-terminal domain VA208B3_28180 PF01520 N-acetylmuramoyl-L-alanine amidase VA208B3_28190 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VA208B3_28200 PF08331 Domain of unknown function (DUF1730) VA208B3_28210 PF00929 Exonuclease VA208B3_28220 PF03193 RsgA GTPase VA208B3_28230 PF02666 Phosphatidylserine decarboxylase VA208B3_28240 PF00939 Sodium:sulfate symporter transmembrane region VA208B3_28250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_28250 PF00672 HAMP domain VA208B3_28270 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VA208B3_28270 PF01676 Metalloenzyme superfamily VA208B3_28280 PF00581 Rhodanese-like domain VA208B3_28290 PF02556 Preprotein translocase subunit SecB VA208B3_28300 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VA208B3_28300 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VA208B3_28310 PF06426 Serine acetyltransferase, N-terminal VA208B3_28310 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_28320 PF01551 Peptidase family M23 VA208B3_28340 PF08360 QacR-like protein, C-terminal region VA208B3_28340 PF00440 Bacterial regulatory proteins, tetR family VA208B3_28360 PF00152 tRNA synthetases class II (D, K and N) VA208B3_28370 PF00890 FAD binding domain VA208B3_28370 PF02910 Fumarate reductase flavoprotein C-term VA208B3_28380 PF13085 2Fe-2S iron-sulfur cluster binding domain VA208B3_28380 PF13183 4Fe-4S dicluster domain VA208B3_28390 PF02300 Fumarate reductase subunit C VA208B3_28400 PF02313 Fumarate reductase subunit D VA208B3_28420 PF09285 Elongation factor P, C-terminal VA208B3_28420 PF01132 Elongation factor P (EF-P) OB domain VA208B3_28420 PF08207 Elongation factor P (EF-P) KOW-like domain VA208B3_28430 PF04055 Radical SAM superfamily VA208B3_28440 PF01168 Alanine racemase, N-terminal domain VA208B3_28440 PF00842 Alanine racemase, C-terminal domain VA208B3_28450 PF02308 MgtC family VA208B3_28470 PF00118 TCP-1/cpn60 chaperonin family VA208B3_28480 PF00166 Chaperonin 10 Kd subunit VA208B3_28490 PF01554 MatE VA208B3_28500 PF00365 Phosphofructokinase VA208B3_28510 PF16916 Dimerisation domain of Zinc Transporter VA208B3_28510 PF01545 Cation efflux family VA208B3_28520 PF07813 LTXXQ motif family protein VA208B3_28530 PF00486 Transcriptional regulatory protein, C terminal VA208B3_28530 PF00072 Response regulator receiver domain VA208B3_28540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_28540 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_28540 PF00672 HAMP domain VA208B3_28540 PF16527 Two-component sensor protein CpxA, periplasmic domain VA208B3_28550 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VA208B3_28550 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VA208B3_28560 PF00588 SpoU rRNA Methylase family VA208B3_28570 PF04186 FxsA cytoplasmic membrane protein VA208B3_28580 PF10415 Fumarase C C-terminus VA208B3_28580 PF00206 Lyase VA208B3_28590 PF03605 Anaerobic c4-dicarboxylate membrane transporter VA208B3_28600 PF02683 Cytochrome C biogenesis protein transmembrane region VA208B3_28600 PF11412 Disulphide bond corrector protein DsbC VA208B3_28610 PF00196 Bacterial regulatory proteins, luxR family VA208B3_28610 PF00072 Response regulator receiver domain VA208B3_28620 PF03471 Transporter associated domain VA208B3_28620 PF02080 TrkA-C domain VA208B3_28620 PF00999 Sodium/hydrogen exchanger family VA208B3_28640 PF00474 Sodium:solute symporter family VA208B3_28670 PF10415 Fumarase C C-terminus VA208B3_28670 PF00206 Lyase VA208B3_28680 PF00672 HAMP domain VA208B3_28680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_28680 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_28680 PF01627 Hpt domain VA208B3_28680 PF00072 Response regulator receiver domain VA208B3_28690 PF12832 MFS_1 like family VA208B3_28720 PF13193 AMP-binding enzyme C-terminal domain VA208B3_28720 PF16177 Acetyl-coenzyme A synthetase N-terminus VA208B3_28720 PF00501 AMP-binding enzyme VA208B3_28730 PF01220 Dehydroquinase class II VA208B3_28740 PF00364 Biotin-requiring enzyme VA208B3_28750 PF02785 Biotin carboxylase C-terminal domain VA208B3_28750 PF00289 Biotin carboxylase, N-terminal domain VA208B3_28750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VA208B3_28770 PF01207 Dihydrouridine synthase (Dus) VA208B3_28780 PF02954 Bacterial regulatory protein, Fis family VA208B3_28790 PF07690 Major Facilitator Superfamily VA208B3_28800 PF12848 ABC transporter VA208B3_28800 PF00005 ABC transporter VA208B3_28810 PF05230 MASE2 domain VA208B3_28810 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_28820 PF01276 Orn/Lys/Arg decarboxylase, major domain VA208B3_28820 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VA208B3_28820 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VA208B3_28830 PF13520 Amino acid permease VA208B3_28840 PF18500 CadC C-terminal domain 1 VA208B3_28840 PF00486 Transcriptional regulatory protein, C terminal VA208B3_28860 PF13411 MerR HTH family regulatory protein VA208B3_28870 PF01808 AICARFT/IMPCHase bienzyme VA208B3_28870 PF02142 MGS-like domain VA208B3_28880 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VA208B3_28880 PF02843 Phosphoribosylglycinamide synthetase, C domain VA208B3_28880 PF02844 Phosphoribosylglycinamide synthetase, N domain VA208B3_28900 PF00216 Bacterial DNA-binding protein VA208B3_28910 PF00571 CBS domain VA208B3_28910 PF01595 Cyclin M transmembrane N-terminal domain VA208B3_28920 PF04222 Protein of unknown function (DUF416) VA208B3_28930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA208B3_28940 PF03167 Uracil DNA glycosylase superfamily VA208B3_28950 PF01208 Uroporphyrinogen decarboxylase (URO-D) VA208B3_28980 PF00293 NUDIX domain VA208B3_28980 PF09297 NADH pyrophosphatase zinc ribbon domain VA208B3_28990 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VA208B3_29000 PF04997 RNA polymerase Rpb1, domain 1 VA208B3_29000 PF00623 RNA polymerase Rpb1, domain 2 VA208B3_29000 PF04983 RNA polymerase Rpb1, domain 3 VA208B3_29000 PF05000 RNA polymerase Rpb1, domain 4 VA208B3_29000 PF04998 RNA polymerase Rpb1, domain 5 VA208B3_29010 PF04565 RNA polymerase Rpb2, domain 3 VA208B3_29010 PF04561 RNA polymerase Rpb2, domain 2 VA208B3_29010 PF00562 RNA polymerase Rpb2, domain 6 VA208B3_29010 PF10385 RNA polymerase beta subunit external 1 domain VA208B3_29010 PF04560 RNA polymerase Rpb2, domain 7 VA208B3_29010 PF04563 RNA polymerase beta subunit VA208B3_29020 PF16320 Ribosomal protein L7/L12 dimerisation domain VA208B3_29020 PF00542 Ribosomal protein L7/L12 C-terminal domain VA208B3_29030 PF00466 Ribosomal protein L10 VA208B3_29040 PF00687 Ribosomal protein L1p/L10e family VA208B3_29050 PF00298 Ribosomal protein L11, RNA binding domain VA208B3_29050 PF03946 Ribosomal protein L11, N-terminal domain VA208B3_29060 PF00467 KOW motif VA208B3_29060 PF02357 Transcription termination factor nusG VA208B3_29070 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VA208B3_29080 PF03143 Elongation factor Tu C-terminal domain VA208B3_29080 PF00009 Elongation factor Tu GTP binding domain VA208B3_29080 PF03144 Elongation factor Tu domain 2 VA208B3_29090 PF00485 Phosphoribulokinase / Uridine kinase family VA208B3_29100 PF02237 Biotin protein ligase C terminal domain VA208B3_29100 PF03099 Biotin/lipoate A/B protein ligase family VA208B3_29100 PF08279 HTH domain VA208B3_29110 PF01565 FAD binding domain VA208B3_29110 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VA208B3_29130 PF13091 PLD-like domain VA208B3_29150 PF01177 Asp/Glu/Hydantoin racemase VA208B3_29170 PF07715 TonB-dependent Receptor Plug Domain VA208B3_29170 PF00593 TonB dependent receptor VA208B3_29180 PF05958 tRNA (Uracil-5-)-methyltransferase VA208B3_29200 PF00440 Bacterial regulatory proteins, tetR family VA208B3_29210 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_29210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA208B3_29220 PF01554 MatE VA208B3_29230 PF04072 Leucine carboxyl methyltransferase VA208B3_29240 PF01726 LexA DNA binding domain VA208B3_29240 PF00717 Peptidase S24-like VA208B3_29250 PF01553 Acyltransferase VA208B3_29260 PF01040 UbiA prenyltransferase family VA208B3_29270 PF04345 Chorismate lyase VA208B3_29280 PF03748 Flagellar basal body-associated protein FliL VA208B3_29290 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VA208B3_29290 PF01694 Rhomboid family VA208B3_29300 PF00581 Rhodanese-like domain VA208B3_29310 PF00140 Sigma-70 factor, region 1.2 VA208B3_29310 PF04542 Sigma-70 region 2 VA208B3_29310 PF04545 Sigma-70, region 4 VA208B3_29320 PF18075 FtsX extracellular domain VA208B3_29330 PF00005 ABC transporter VA208B3_29340 PF00448 SRP54-type protein, GTPase domain VA208B3_29340 PF02881 SRP54-type protein, helical bundle domain VA208B3_29370 PF01914 MarC family integral membrane protein VA208B3_29480 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA208B3_29480 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA208B3_29490 PF01022 Bacterial regulatory protein, arsR family VA208B3_29500 PF08668 HDOD domain VA208B3_29500 PF00563 EAL domain VA208B3_29510 PF01810 LysE type translocator VA208B3_29520 PF12146 Serine aminopeptidase, S33 VA208B3_29560 PF03942 DTW domain VA208B3_29570 PF00563 EAL domain VA208B3_29570 PF08495 FIST N domain VA208B3_29570 PF10442 FIST C domain VA208B3_29570 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_29580 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_29590 PF02899 Phage integrase, N-terminal SAM-like domain VA208B3_29590 PF00589 Phage integrase family VA208B3_29610 PF01678 Diaminopimelate epimerase VA208B3_29620 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VA208B3_29620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VA208B3_29630 PF01491 Frataxin-like domain VA208B3_29640 PF01295 Adenylate cyclase, class-I VA208B3_29640 PF12633 Adenylate cyclase NT domain VA208B3_29650 PF03900 Porphobilinogen deaminase, C-terminal domain VA208B3_29650 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VA208B3_29660 PF02602 Uroporphyrinogen-III synthase HemD VA208B3_29670 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VA208B3_29680 PF07219 HemY protein N-terminus VA208B3_29690 PF00175 Oxidoreductase NAD-binding domain VA208B3_29700 PF00111 2Fe-2S iron-sulfur cluster binding domain VA208B3_29710 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VA208B3_29730 PF07497 Rho termination factor, RNA-binding domain VA208B3_29730 PF07498 Rho termination factor, N-terminal domain VA208B3_29730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA208B3_29740 PF00085 Thioredoxin VA208B3_29750 PF00270 DEAD/DEAH box helicase VA208B3_29750 PF00271 Helicase conserved C-terminal domain VA208B3_29760 PF02541 Ppx/GppA phosphatase family VA208B3_29770 PF02592 Putative vitamin uptake transporter VA208B3_29790 PF16124 RecQ zinc-binding VA208B3_29790 PF09382 RQC domain VA208B3_29790 PF00270 DEAD/DEAH box helicase VA208B3_29790 PF00271 Helicase conserved C-terminal domain VA208B3_29790 PF00570 HRDC domain VA208B3_29800 PF00892 EamA-like transporter family VA208B3_29820 PF01810 LysE type translocator VA208B3_29840 PF00580 UvrD/REP helicase N-terminal domain VA208B3_29840 PF13361 UvrD-like helicase C-terminal domain VA208B3_29860 PF05114 Protein of unknown function (DUF692) VA208B3_29900 PF07690 Major Facilitator Superfamily VA208B3_29910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_29910 PF03466 LysR substrate binding domain VA208B3_29920 PF00557 Metallopeptidase family M24 VA208B3_29920 PF01321 Creatinase/Prolidase N-terminal domain VA208B3_29920 PF00557 Metallopeptidase family M24 VA208B3_29920 PF01321 Creatinase/Prolidase N-terminal domain VA208B3_29930 PF04055 Radical SAM superfamily VA208B3_29930 PF06968 Biotin and Thiamin Synthesis associated domain VA208B3_29940 PF05690 Thiazole biosynthesis protein ThiG VA208B3_29950 PF02597 ThiS family VA208B3_29960 PF00899 ThiF family VA208B3_29970 PF02581 Thiamine monophosphate synthase VA208B3_29980 PF13667 ThiC-associated domain VA208B3_29980 PF01964 Radical SAM ThiC family VA208B3_29990 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VA208B3_30000 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_30010 PF07369 Protein of unknown function (DUF1488) VA208B3_30020 PF08501 Shikimate dehydrogenase substrate binding domain VA208B3_30020 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VA208B3_30020 PF01488 Shikimate / quinate 5-dehydrogenase VA208B3_30030 PF01218 Coproporphyrinogen III oxidase VA208B3_30040 PF01300 Telomere recombination VA208B3_30050 PF00731 AIR carboxylase VA208B3_30060 PF02222 ATP-grasp domain VA208B3_30060 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VA208B3_30070 PF01396 Topoisomerase DNA binding C4 zinc finger VA208B3_30080 PF04361 Protein of unknown function (DUF494) VA208B3_30090 PF02481 DNA recombination-mediator protein A VA208B3_30090 PF17782 DprA winged helix domain VA208B3_30110 PF01327 Polypeptide deformylase VA208B3_30120 PF00551 Formyl transferase VA208B3_30120 PF02911 Formyl transferase, C-terminal domain VA208B3_30130 PF01189 16S rRNA methyltransferase RsmB/F VA208B3_30130 PF01029 NusB family VA208B3_30140 PF02254 TrkA-N domain VA208B3_30140 PF02080 TrkA-C domain VA208B3_30150 PF02386 Cation transport protein VA208B3_30170 PF03006 Haemolysin-III related VA208B3_30180 PF07070 SpoOM protein VA208B3_30200 PF06288 Protein of unknown function (DUF1040) VA208B3_30210 PF13746 4Fe-4S dicluster domain VA208B3_30210 PF12801 4Fe-4S binding domain VA208B3_30210 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VA208B3_30220 PF01636 Phosphotransferase enzyme family VA208B3_30230 PF01323 DSBA-like thioredoxin domain VA208B3_30240 PF01553 Acyltransferase VA208B3_30260 PF01078 Magnesium chelatase, subunit ChlI VA208B3_30260 PF13335 Magnesium chelatase, subunit ChlI C-terminal VA208B3_30270 PF00205 Thiamine pyrophosphate enzyme, central domain VA208B3_30270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VA208B3_30270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VA208B3_30290 PF01063 Amino-transferase class IV VA208B3_30300 PF00920 Dehydratase family VA208B3_30310 PF00291 Pyridoxal-phosphate dependent enzyme VA208B3_30310 PF00585 C-terminal regulatory domain of Threonine dehydratase VA208B3_30320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_30320 PF03466 LysR substrate binding domain VA208B3_30330 PF07690 Major Facilitator Superfamily VA208B3_30340 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_30350 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_30360 PF12804 MobA-like NTP transferase domain VA208B3_30360 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_30370 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VA208B3_30370 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VA208B3_30380 PF02874 ATP synthase alpha/beta family, beta-barrel domain VA208B3_30380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA208B3_30390 PF00231 ATP synthase VA208B3_30400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA208B3_30400 PF00306 ATP synthase alpha/beta chain, C terminal domain VA208B3_30400 PF02874 ATP synthase alpha/beta family, beta-barrel domain VA208B3_30410 PF00213 ATP synthase delta (OSCP) subunit VA208B3_30420 PF00430 ATP synthase B/B' CF(0) VA208B3_30430 PF00137 ATP synthase subunit C VA208B3_30440 PF00119 ATP synthase A chain VA208B3_30450 PF03899 ATP synthase I chain VA208B3_30460 PF02195 ParB-like nuclease domain VA208B3_30460 PF17762 HTH domain found in ParB protein VA208B3_30470 PF13614 AAA domain VA208B3_30480 PF02527 rRNA small subunit methyltransferase G VA208B3_30490 PF01134 Glucose inhibited division protein A VA208B3_30490 PF13932 GidA associated domain VA208B3_30500 PF00258 Flavodoxin VA208B3_30510 PF01926 50S ribosome-binding GTPase VA208B3_30510 PF12631 MnmE helical domain VA208B3_30510 PF10396 GTP-binding protein TrmE N-terminus VA208B3_30520 PF14849 YidC periplasmic domain VA208B3_30520 PF02096 60Kd inner membrane protein VA208B3_30530 PF00825 Ribonuclease P VA208B3_30540 PF00468 Ribosomal protein L34 VA208B3_30550 PF00005 ABC transporter VA208B3_30560 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_30570 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_30600 PF00005 ABC transporter VA208B3_30610 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_30620 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_30630 PF12849 PBP superfamily domain VA208B3_30640 PF00672 HAMP domain VA208B3_30640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_30680 PF07715 TonB-dependent Receptor Plug Domain VA208B3_30680 PF00593 TonB dependent receptor VA208B3_30690 PF00326 Prolyl oligopeptidase family VA208B3_30690 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA208B3_30700 PF00270 DEAD/DEAH box helicase VA208B3_30700 PF00271 Helicase conserved C-terminal domain VA208B3_30720 PF03734 L,D-transpeptidase catalytic domain VA208B3_30720 PF01476 LysM domain VA208B3_30720 PF17969 L,D-transpeptidase C-terminal domain VA208B3_30730 PF00875 DNA photolyase VA208B3_30730 PF03441 FAD binding domain of DNA photolyase VA208B3_30740 PF13411 MerR HTH family regulatory protein VA208B3_30750 PF08349 Protein of unknown function (DUF1722) VA208B3_30760 PF01048 Phosphorylase superfamily VA208B3_30790 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_30800 PF11742 Protein of unknown function (DUF3302) VA208B3_30810 PF00529 HlyD membrane-fusion protein of T1SS VA208B3_30810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_30820 PF07155 ECF-type riboflavin transporter, S component VA208B3_30830 PF00005 ABC transporter VA208B3_30830 PF12558 ATP-binding cassette cobalt transporter VA208B3_30860 PF13237 4Fe-4S dicluster domain VA208B3_30860 PF12801 4Fe-4S binding domain VA208B3_30870 PF12838 4Fe-4S dicluster domain VA208B3_30870 PF12800 4Fe-4S binding domain VA208B3_30880 PF00583 Acetyltransferase (GNAT) family VA208B3_30910 PF12945 Flagellar protein YcgR VA208B3_30910 PF07238 PilZ domain VA208B3_30920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_30920 PF00672 HAMP domain VA208B3_30930 PF05362 Lon protease (S16) C-terminal proteolytic domain VA208B3_30930 PF13654 AAA domain VA208B3_30950 PF00005 ABC transporter VA208B3_30950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_30960 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA208B3_30960 PF00326 Prolyl oligopeptidase family VA208B3_30970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_30970 PF03466 LysR substrate binding domain VA208B3_30980 PF02652 L-lactate permease VA208B3_30990 PF01070 FMN-dependent dehydrogenase VA208B3_31010 PF00924 Mechanosensitive ion channel VA208B3_31020 PF00194 Eukaryotic-type carbonic anhydrase VA208B3_31080 PF08240 Alcohol dehydrogenase GroES-like domain VA208B3_31080 PF00107 Zinc-binding dehydrogenase VA208B3_31090 PF00155 Aminotransferase class I and II VA208B3_31100 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_31100 PF00563 EAL domain VA208B3_31100 PF03707 Bacterial signalling protein N terminal repeat VA208B3_31110 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_31120 PF00266 Aminotransferase class-V VA208B3_31130 PF00080 Copper/zinc superoxide dismutase (SODC) VA208B3_31140 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_31140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_31140 PF07689 KaiB domain VA208B3_31160 PF00486 Transcriptional regulatory protein, C terminal VA208B3_31160 PF00072 Response regulator receiver domain VA208B3_31200 PF03466 LysR substrate binding domain VA208B3_31200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_31210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA208B3_31270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_31270 PF03466 LysR substrate binding domain VA208B3_31300 PF18269 T3SS EscN ATPase C-terminal domain VA208B3_31300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VA208B3_31320 PF01706 FliG C-terminal domain VA208B3_31320 PF14841 FliG middle domain VA208B3_31320 PF14842 FliG N-terminal domain VA208B3_31330 PF01514 Secretory protein of YscJ/FliF family VA208B3_31330 PF08345 Flagellar M-ring protein C-terminal VA208B3_31340 PF02049 Flagellar hook-basal body complex protein FliE VA208B3_31350 PF02954 Bacterial regulatory protein, Fis family VA208B3_31350 PF00158 Sigma-54 interaction domain VA208B3_31350 PF00072 Response regulator receiver domain VA208B3_31380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VA208B3_31390 PF00813 FliP family VA208B3_31400 PF01313 Bacterial export proteins, family 3 VA208B3_31410 PF01311 Bacterial export proteins, family 1 VA208B3_31420 PF01312 FlhB HrpN YscU SpaS Family VA208B3_31430 PF00771 FHIPEP family VA208B3_31450 PF00700 Bacterial flagellin C-terminal helical region VA208B3_31450 PF00669 Bacterial flagellin N-terminal helical region VA208B3_31470 PF07196 Flagellin hook IN motif VA208B3_31470 PF07195 Flagellar hook-associated protein 2 C-terminus VA208B3_31470 PF02465 Flagellar hook-associated protein 2 N-terminus VA208B3_31480 PF02561 Flagellar protein FliS VA208B3_31510 PF03748 Flagellar basal body-associated protein FliL VA208B3_31520 PF04542 Sigma-70 region 2 VA208B3_31520 PF04545 Sigma-70, region 4 VA208B3_31530 PF01618 MotA/TolQ/ExbB proton channel family VA208B3_31540 PF13677 Membrane MotB of proton-channel complex MotA/MotB VA208B3_31540 PF00691 OmpA family VA208B3_31550 PF08000 Bacterial PH domain VA208B3_31590 PF02901 Pyruvate formate lyase-like VA208B3_31590 PF01228 Glycine radical VA208B3_31600 PF04055 Radical SAM superfamily VA208B3_31610 PF00923 Transaldolase/Fructose-6-phosphate aldolase VA208B3_31630 PF00583 Acetyltransferase (GNAT) family VA208B3_31650 PF07690 Major Facilitator Superfamily VA208B3_31660 PF03466 LysR substrate binding domain VA208B3_31660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_31670 PF00892 EamA-like transporter family VA208B3_31720 PF13533 Biotin-lipoyl like VA208B3_31740 PF01594 AI-2E family transporter VA208B3_31750 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VA208B3_31770 PF00175 Oxidoreductase NAD-binding domain VA208B3_31770 PF00970 Oxidoreductase FAD-binding domain VA208B3_31790 PF09905 DNA-binding protein VF530 VA208B3_31800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_31800 PF03466 LysR substrate binding domain VA208B3_31820 PF00881 Nitroreductase family VA208B3_31830 PF12833 Helix-turn-helix domain VA208B3_31830 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VA208B3_31840 PF00128 Alpha amylase, catalytic domain VA208B3_31840 PF00686 Starch binding domain VA208B3_31850 PF00768 D-alanyl-D-alanine carboxypeptidase VA208B3_31850 PF07943 Penicillin-binding protein 5, C-terminal domain VA208B3_31860 PF00561 alpha/beta hydrolase fold VA208B3_31880 PF17773 UPF0176 acylphosphatase like domain VA208B3_31880 PF00581 Rhodanese-like domain VA208B3_31890 PF18416 N-acetylglucosamine binding protein domain 2 VA208B3_31890 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VA208B3_31900 PF01734 Patatin-like phospholipase VA208B3_31910 PF01914 MarC family integral membrane protein VA208B3_31920 PF00881 Nitroreductase family VA208B3_31930 PF02563 Polysaccharide biosynthesis/export protein VA208B3_31930 PF10531 SLBB domain VA208B3_31930 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VA208B3_31940 PF01451 Low molecular weight phosphotyrosine protein phosphatase VA208B3_31950 PF02706 Chain length determinant protein VA208B3_31950 PF13807 G-rich domain on putative tyrosine kinase VA208B3_31950 PF13614 AAA domain VA208B3_31970 PF08803 Putative mono-oxygenase ydhR VA208B3_31980 PF03466 LysR substrate binding domain VA208B3_31980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_32000 PF00375 Sodium:dicarboxylate symporter family VA208B3_32010 PF06803 Protein of unknown function (DUF1232) VA208B3_32020 PF01546 Peptidase family M20/M25/M40 VA208B3_32020 PF07687 Peptidase dimerisation domain VA208B3_32030 PF07670 Nucleoside recognition VA208B3_32040 PF07670 Nucleoside recognition VA208B3_32060 PF00128 Alpha amylase, catalytic domain VA208B3_32070 PF00912 Transglycosylase VA208B3_32080 PF00128 Alpha amylase, catalytic domain VA208B3_32080 PF02806 Alpha amylase, C-terminal all-beta domain VA208B3_32080 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA208B3_32090 PF02446 4-alpha-glucanotransferase VA208B3_32100 PF00343 Carbohydrate phosphorylase VA208B3_32120 PF17874 MalT-like TPR region VA208B3_32120 PF00196 Bacterial regulatory proteins, luxR family VA208B3_32150 PF02630 SCO1/SenC VA208B3_32170 PF00367 phosphotransferase system, EIIB VA208B3_32170 PF02378 Phosphotransferase system, EIIC VA208B3_32180 PF03193 RsgA GTPase VA208B3_32190 PF00375 Sodium:dicarboxylate symporter family VA208B3_32210 PF08543 Phosphomethylpyrimidine kinase VA208B3_32230 PF13520 Amino acid permease VA208B3_32240 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VA208B3_32240 PF01276 Orn/Lys/Arg decarboxylase, major domain VA208B3_32240 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VA208B3_32270 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA208B3_32270 PF11852 Domain of unknown function (DUF3372) VA208B3_32270 PF03714 Bacterial pullanase-associated domain VA208B3_32270 PF18494 Pullulanase Ins domain VA208B3_32270 PF17967 Pullulanase N2 domain VA208B3_32280 PF04231 Endonuclease I VA208B3_32290 PF00128 Alpha amylase, catalytic domain VA208B3_32290 PF02903 Alpha amylase, N-terminal ig-like domain VA208B3_32290 PF16657 Maltogenic Amylase, C-terminal domain VA208B3_32320 PF02264 LamB porin VA208B3_32330 PF00128 Alpha amylase, catalytic domain VA208B3_32330 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VA208B3_32350 PF07690 Major Facilitator Superfamily VA208B3_32370 PF01551 Peptidase family M23 VA208B3_32370 PF04225 Opacity-associated protein A LysM-like domain VA208B3_32390 PF05193 Peptidase M16 inactive domain VA208B3_32390 PF00675 Insulinase (Peptidase family M16) VA208B3_32400 PF00672 HAMP domain VA208B3_32400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_32400 PF17200 Single Cache domain 2 VA208B3_32410 PF00005 ABC transporter VA208B3_32420 PF01032 FecCD transport family VA208B3_32430 PF01032 FecCD transport family VA208B3_32440 PF01497 Periplasmic binding protein VA208B3_32450 PF00593 TonB dependent receptor VA208B3_32450 PF07660 Secretin and TonB N terminus short domain VA208B3_32450 PF07715 TonB-dependent Receptor Plug Domain VA208B3_32460 PF00593 TonB dependent receptor VA208B3_32460 PF07715 TonB-dependent Receptor Plug Domain VA208B3_32470 PF02655 ATP-grasp domain VA208B3_32470 PF00206 Lyase VA208B3_32480 PF04183 IucA / IucC family VA208B3_32480 PF06276 Ferric iron reductase FhuF-like transporter VA208B3_32500 PF04183 IucA / IucC family VA208B3_32500 PF06276 Ferric iron reductase FhuF-like transporter VA208B3_32510 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VA208B3_32510 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VA208B3_32520 PF01547 Bacterial extracellular solute-binding protein VA208B3_32530 PF08521 Two-component sensor kinase N-terminal VA208B3_32530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_32530 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_32540 PF00072 Response regulator receiver domain VA208B3_32540 PF00486 Transcriptional regulatory protein, C terminal VA208B3_32550 PF02378 Phosphotransferase system, EIIC VA208B3_32550 PF00367 phosphotransferase system, EIIB VA208B3_32570 PF01136 Peptidase family U32 VA208B3_32580 PF02653 Branched-chain amino acid transport system / permease component VA208B3_32590 PF00005 ABC transporter VA208B3_32600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA208B3_32610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VA208B3_32610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VA208B3_32620 PF00596 Class II Aldolase and Adducin N-terminal domain VA208B3_32630 PF11762 L-arabinose isomerase C-terminal domain VA208B3_32630 PF02610 L-arabinose isomerase VA208B3_32650 PF02311 AraC-like ligand binding domain VA208B3_32650 PF12833 Helix-turn-helix domain VA208B3_32680 PF02566 OsmC-like protein VA208B3_32690 PF01047 MarR family VA208B3_32700 PF10417 C-terminal domain of 1-Cys peroxiredoxin VA208B3_32700 PF00578 AhpC/TSA family VA208B3_32710 PF13192 Thioredoxin domain VA208B3_32710 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_32740 PF03466 LysR substrate binding domain VA208B3_32740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_32750 PF12833 Helix-turn-helix domain VA208B3_32750 PF01965 DJ-1/PfpI family VA208B3_32760 PF08281 Sigma-70, region 4 VA208B3_32760 PF04542 Sigma-70 region 2 VA208B3_32780 PF02743 Cache domain VA208B3_32780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_32780 PF00672 HAMP domain VA208B3_32790 PF03466 LysR substrate binding domain VA208B3_32790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_32800 PF02056 Family 4 glycosyl hydrolase VA208B3_32800 PF11975 Family 4 glycosyl hydrolase C-terminal domain VA208B3_32830 PF03475 3-alpha domain VA208B3_32830 PF03473 MOSC domain VA208B3_32840 PF00270 DEAD/DEAH box helicase VA208B3_32840 PF00271 Helicase conserved C-terminal domain VA208B3_32880 PF06719 AraC-type transcriptional regulator N-terminus VA208B3_32880 PF12833 Helix-turn-helix domain VA208B3_32900 PF00664 ABC transporter transmembrane region VA208B3_32900 PF00005 ABC transporter VA208B3_32920 PF01037 Lrp/AsnC ligand binding domain VA208B3_32990 PF00474 Sodium:solute symporter family VA208B3_33010 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VA208B3_33010 PF14850 DNA-binding domain of Proline dehydrogenase VA208B3_33010 PF01619 Proline dehydrogenase VA208B3_33010 PF00171 Aldehyde dehydrogenase family VA208B3_33020 PF12833 Helix-turn-helix domain VA208B3_33040 PF01243 Pyridoxamine 5'-phosphate oxidase VA208B3_33040 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VA208B3_33060 PF02743 Cache domain VA208B3_33060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_33060 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_33070 PF00072 Response regulator receiver domain VA208B3_33070 PF02954 Bacterial regulatory protein, Fis family VA208B3_33070 PF00158 Sigma-54 interaction domain VA208B3_33080 PF00529 HlyD membrane-fusion protein of T1SS VA208B3_33110 PF03412 Peptidase C39 family VA208B3_33110 PF00664 ABC transporter transmembrane region VA208B3_33110 PF00005 ABC transporter VA208B3_33130 PF03358 NADPH-dependent FMN reductase VA208B3_33140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_33150 PF00246 Zinc carboxypeptidase VA208B3_33160 PF01418 Helix-turn-helix domain, rpiR family VA208B3_33160 PF01380 SIS domain VA208B3_33170 PF01380 SIS domain VA208B3_33180 PF02378 Phosphotransferase system, EIIC VA208B3_33180 PF00367 phosphotransferase system, EIIB VA208B3_33190 PF00267 Gram-negative porin VA208B3_33200 PF03575 Peptidase family S51 VA208B3_33220 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_33240 PF13718 GNAT acetyltransferase 2 VA208B3_33240 PF05127 Helicase VA208B3_33260 PF08775 ParB family VA208B3_33260 PF02195 ParB-like nuclease domain VA208B3_33270 PF18607 ParA helix turn helix domain VA208B3_33270 PF13614 AAA domain VA208B3_33300 PF00005 ABC transporter VA208B3_33300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_33310 PF00005 ABC transporter VA208B3_33310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VA208B3_33330 PF08719 Domain of unknown function (DUF1768) VA208B3_33330 PF00925 GTP cyclohydrolase II VA208B3_33350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_33350 PF01627 Hpt domain VA208B3_33350 PF00072 Response regulator receiver domain VA208B3_33350 PF00672 HAMP domain VA208B3_33350 PF17149 Periplasmic sensor domain found in signal transduction proteins VA208B3_33350 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_33370 PF01709 Transcriptional regulator VA208B3_33380 PF01098 Cell cycle protein VA208B3_33400 PF00005 ABC transporter VA208B3_33440 PF13492 GAF domain VA208B3_33440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_33440 PF06580 Histidine kinase VA208B3_33440 PF07694 5TMR of 5TMR-LYT VA208B3_33450 PF04397 LytTr DNA-binding domain VA208B3_33450 PF00072 Response regulator receiver domain VA208B3_33470 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VA208B3_33480 PF00672 HAMP domain VA208B3_33480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_33480 PF17200 Single Cache domain 2 VA208B3_33500 PF00132 Bacterial transferase hexapeptide (six repeats) VA208B3_33510 PF03616 Sodium/glutamate symporter VA208B3_33530 PF00005 ABC transporter VA208B3_33540 PF00392 Bacterial regulatory proteins, gntR family VA208B3_33540 PF00155 Aminotransferase class I and II VA208B3_33550 PF03616 Sodium/glutamate symporter VA208B3_33570 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VA208B3_33600 PF03466 LysR substrate binding domain VA208B3_33600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_33610 PF02678 Pirin VA208B3_33610 PF17954 Quercetinase C-terminal cupin domain VA208B3_33620 PF17954 Quercetinase C-terminal cupin domain VA208B3_33620 PF02678 Pirin VA208B3_33630 PF07681 DoxX VA208B3_33650 PF00730 HhH-GPD superfamily base excision DNA repair protein VA208B3_33650 PF06029 AlkA N-terminal domain VA208B3_33660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VA208B3_33660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VA208B3_33680 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VA208B3_33700 PF03600 Citrate transporter VA208B3_33740 PF00704 Glycosyl hydrolases family 18 VA208B3_33740 PF08329 Chitinase A, N-terminal domain VA208B3_33760 PF06865 Pyrimidine/purine nucleoside phosphorylase VA208B3_33780 PF00563 EAL domain VA208B3_33780 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_33790 PF01554 MatE VA208B3_33800 PF00849 RNA pseudouridylate synthase VA208B3_33830 PF03466 LysR substrate binding domain VA208B3_33830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_33860 PF17152 Periplasmic sensor domain VA208B3_33860 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_33880 PF00756 Putative esterase VA208B3_33890 PF08240 Alcohol dehydrogenase GroES-like domain VA208B3_33890 PF00107 Zinc-binding dehydrogenase VA208B3_33900 PF00797 N-acetyltransferase VA208B3_33910 PF03466 LysR substrate binding domain VA208B3_33910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_33940 PF09339 IclR helix-turn-helix domain VA208B3_33940 PF01614 Bacterial transcriptional regulator VA208B3_33960 PF10688 Bacterial inner membrane protein VA208B3_33970 PF07883 Cupin domain VA208B3_34000 PF00294 pfkB family carbohydrate kinase VA208B3_34010 PF01081 KDPG and KHG aldolase VA208B3_34040 PF13229 Right handed beta helix region VA208B3_34050 PF00474 Sodium:solute symporter family VA208B3_34060 PF14583 Oligogalacturonate lyase VA208B3_34070 PF08021 Siderophore-interacting FAD-binding domain VA208B3_34070 PF04954 Siderophore-interacting protein VA208B3_34080 PF01810 LysE type translocator VA208B3_34090 PF01037 Lrp/AsnC ligand binding domain VA208B3_34100 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VA208B3_34100 PF18416 N-acetylglucosamine binding protein domain 2 VA208B3_34130 PF13599 Pentapeptide repeats (9 copies) VA208B3_34140 PF03922 OmpW family VA208B3_34150 PF13533 Biotin-lipoyl like VA208B3_34160 PF07690 Major Facilitator Superfamily VA208B3_34180 PF12706 Beta-lactamase superfamily domain VA208B3_34200 PF01204 Trehalase VA208B3_34210 PF01661 Macro domain VA208B3_34220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA208B3_34230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_34230 PF03466 LysR substrate binding domain VA208B3_34250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_34250 PF03466 LysR substrate binding domain VA208B3_34280 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_34330 PF05651 Putative sugar diacid recognition VA208B3_34330 PF17853 GGDEF-like domain VA208B3_34330 PF13556 PucR C-terminal helix-turn-helix domain VA208B3_34340 PF02447 GntP family permease VA208B3_34350 PF02595 Glycerate kinase family VA208B3_34360 PF00392 Bacterial regulatory proteins, gntR family VA208B3_34360 PF00155 Aminotransferase class I and II VA208B3_34400 PF00583 Acetyltransferase (GNAT) family VA208B3_34450 PF03264 NapC/NirT cytochrome c family, N-terminal region VA208B3_34460 PF01568 Molydopterin dinucleotide binding domain VA208B3_34460 PF18364 Molybdopterin oxidoreductase N-terminal domain VA208B3_34460 PF00384 Molybdopterin oxidoreductase VA208B3_34480 PF02581 Thiamine monophosphate synthase VA208B3_34490 PF02110 Hydroxyethylthiazole kinase family VA208B3_34500 PF03070 TENA/THI-4/PQQC family VA208B3_34510 PF09084 NMT1/THI5 like VA208B3_34520 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_34530 PF00005 ABC transporter VA208B3_34540 PF08543 Phosphomethylpyrimidine kinase VA208B3_34550 PF01523 Putative modulator of DNA gyrase VA208B3_34560 PF01523 Putative modulator of DNA gyrase VA208B3_34570 PF04013 Putative SAM-dependent RNA methyltransferase VA208B3_34590 PF10928 Protein of unknown function (DUF2810) VA208B3_34600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VA208B3_34600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VA208B3_34620 PF03009 Glycerophosphoryl diester phosphodiesterase family VA208B3_34630 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VA208B3_34630 PF00056 lactate/malate dehydrogenase, NAD binding domain VA208B3_34640 PF00072 Response regulator receiver domain VA208B3_34640 PF00486 Transcriptional regulatory protein, C terminal VA208B3_34650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_34650 PF00672 HAMP domain VA208B3_34650 PF16750 Sensor domain of 2-component histidine kinase VA208B3_34650 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_34660 PF00593 TonB dependent receptor VA208B3_34660 PF07715 TonB-dependent Receptor Plug Domain VA208B3_34680 PF01618 MotA/TolQ/ExbB proton channel family VA208B3_34690 PF01618 MotA/TolQ/ExbB proton channel family VA208B3_34700 PF02472 Biopolymer transport protein ExbD/TolR VA208B3_34780 PF01297 Zinc-uptake complex component A periplasmic VA208B3_34790 PF00005 ABC transporter VA208B3_34800 PF00950 ABC 3 transport family VA208B3_34830 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA208B3_34830 PF00326 Prolyl oligopeptidase family VA208B3_34840 PF07690 Major Facilitator Superfamily VA208B3_34850 PF00491 Arginase family VA208B3_34860 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VA208B3_34860 PF17944 Arginine decarboxylase C-terminal helical extension VA208B3_34860 PF17810 Arginine decarboxylase helical bundle domain VA208B3_34870 PF00753 Metallo-beta-lactamase superfamily VA208B3_34880 PF18030 RimK PreATP-grasp domain VA208B3_34880 PF08443 RimK-like ATP-grasp domain VA208B3_34890 PF08443 RimK-like ATP-grasp domain VA208B3_34890 PF18030 RimK PreATP-grasp domain VA208B3_34910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_34910 PF03466 LysR substrate binding domain VA208B3_34960 PF00232 Glycosyl hydrolase family 1 VA208B3_34980 PF02743 Cache domain VA208B3_34980 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_34980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_34990 PF00158 Sigma-54 interaction domain VA208B3_34990 PF00072 Response regulator receiver domain VA208B3_34990 PF02954 Bacterial regulatory protein, Fis family VA208B3_35000 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_35000 PF08448 PAS fold VA208B3_35010 PF05525 Branched-chain amino acid transport protein VA208B3_35040 PF01266 FAD dependent oxidoreductase VA208B3_35060 PF01212 Beta-eliminating lyase VA208B3_35080 PF01773 Na+ dependent nucleoside transporter N-terminus VA208B3_35080 PF07662 Na+ dependent nucleoside transporter C-terminus VA208B3_35080 PF07670 Nucleoside recognition VA208B3_35100 PF13532 2OG-Fe(II) oxygenase superfamily VA208B3_35110 PF05230 MASE2 domain VA208B3_35110 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_35120 PF12729 Four helix bundle sensory module for signal transduction VA208B3_35120 PF00672 HAMP domain VA208B3_35120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_35150 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_35160 PF03441 FAD binding domain of DNA photolyase VA208B3_35160 PF00875 DNA photolyase VA208B3_35170 PF00875 DNA photolyase VA208B3_35170 PF03441 FAD binding domain of DNA photolyase VA208B3_35180 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VA208B3_35200 PF01625 Peptide methionine sulfoxide reductase VA208B3_35200 PF01641 SelR domain VA208B3_35210 PF02566 OsmC-like protein VA208B3_35230 PF02566 OsmC-like protein VA208B3_35240 PF12464 Maltose acetyltransferase VA208B3_35240 PF14602 Hexapeptide repeat of succinyl-transferase VA208B3_35310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_35310 PF03466 LysR substrate binding domain VA208B3_35320 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_35350 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VA208B3_35360 PF00194 Eukaryotic-type carbonic anhydrase VA208B3_35370 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA208B3_35380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_35390 PF12704 MacB-like periplasmic core domain VA208B3_35390 PF02687 FtsX-like permease family VA208B3_35390 PF00005 ABC transporter VA208B3_35400 PF02321 Outer membrane efflux protein VA208B3_35410 PF00657 GDSL-like Lipase/Acylhydrolase VA208B3_35420 PF00082 Subtilase family VA208B3_35420 PF05922 Peptidase inhibitor I9 VA208B3_35440 PF03611 PTS system sugar-specific permease component VA208B3_35460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA208B3_35470 PF00356 Bacterial regulatory proteins, lacI family VA208B3_35480 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_35490 PF00202 Aminotransferase class-III VA208B3_35500 PF00266 Aminotransferase class-V VA208B3_35530 PF00005 ABC transporter VA208B3_35540 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_35550 PF00392 Bacterial regulatory proteins, gntR family VA208B3_35550 PF07702 UTRA domain VA208B3_35580 PF04393 Protein of unknown function (DUF535) VA208B3_35600 PF01266 FAD dependent oxidoreductase VA208B3_35610 PF18027 Cytosolic carboxypeptidase N-terminal domain VA208B3_35610 PF00246 Zinc carboxypeptidase VA208B3_35620 PF00691 OmpA family VA208B3_35620 PF01389 OmpA-like transmembrane domain VA208B3_35630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_35630 PF03466 LysR substrate binding domain VA208B3_35650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_35650 PF03466 LysR substrate binding domain VA208B3_35670 PF00854 POT family VA208B3_35680 PF03315 Serine dehydratase beta chain VA208B3_35680 PF03313 Serine dehydratase alpha chain VA208B3_35720 PF00133 tRNA synthetases class I (I, L, M and V) VA208B3_35720 PF08264 Anticodon-binding domain of tRNA VA208B3_35730 PF01464 Transglycosylase SLT domain VA208B3_35770 PF00460 Flagella basal body rod protein VA208B3_35780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_35780 PF00460 Flagella basal body rod protein VA208B3_35790 PF13860 FlgD Ig-like domain VA208B3_35790 PF13861 FlgD Tudor-like domain VA208B3_35790 PF03963 Flagellar hook capping protein - N-terminal region VA208B3_35800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_35800 PF00460 Flagella basal body rod protein VA208B3_35800 PF07559 Flagellar basal body protein FlaE VA208B3_35810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_35810 PF00460 Flagella basal body rod protein VA208B3_35820 PF00460 Flagella basal body rod protein VA208B3_35820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_35830 PF02107 Flagellar L-ring protein VA208B3_35840 PF02119 Flagellar P-ring protein VA208B3_35850 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VA208B3_35850 PF10135 Rod binding protein VA208B3_35860 PF00460 Flagella basal body rod protein VA208B3_35860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VA208B3_35870 PF00669 Bacterial flagellin N-terminal helical region VA208B3_35910 PF01070 FMN-dependent dehydrogenase VA208B3_35960 PF00581 Rhodanese-like domain VA208B3_35970 PF00166 Chaperonin 10 Kd subunit VA208B3_35980 PF00118 TCP-1/cpn60 chaperonin family VA208B3_36010 PF01810 LysE type translocator VA208B3_36020 PF03466 LysR substrate binding domain VA208B3_36020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_36050 PF08359 YsiA-like protein, C-terminal region VA208B3_36050 PF00440 Bacterial regulatory proteins, tetR family VA208B3_36070 PF02872 5'-nucleotidase, C-terminal domain VA208B3_36070 PF00149 Calcineurin-like phosphoesterase VA208B3_36080 PF03060 Nitronate monooxygenase VA208B3_36090 PF17678 Glycosyl hydrolase family 92 N-terminal domain VA208B3_36090 PF07971 Glycosyl hydrolase family 92 VA208B3_36100 PF17678 Glycosyl hydrolase family 92 N-terminal domain VA208B3_36100 PF07971 Glycosyl hydrolase family 92 VA208B3_36120 PF07971 Glycosyl hydrolase family 92 VA208B3_36120 PF17678 Glycosyl hydrolase family 92 N-terminal domain VA208B3_36130 PF07971 Glycosyl hydrolase family 92 VA208B3_36130 PF17678 Glycosyl hydrolase family 92 N-terminal domain VA208B3_36160 PF03466 LysR substrate binding domain VA208B3_36160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_36180 PF01641 SelR domain VA208B3_36180 PF01625 Peptide methionine sulfoxide reductase VA208B3_36190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA208B3_36200 PF00455 DeoR C terminal sensor domain VA208B3_36200 PF08220 DeoR-like helix-turn-helix domain VA208B3_36220 PF00199 Catalase VA208B3_36220 PF06628 Catalase-related immune-responsive VA208B3_36240 PF00857 Isochorismatase family VA208B3_36260 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VA208B3_36260 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VA208B3_36310 PF03466 LysR substrate binding domain VA208B3_36310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_36320 PF01389 OmpA-like transmembrane domain VA208B3_36320 PF00691 OmpA family VA208B3_36340 PF06629 MltA-interacting protein MipA VA208B3_36350 PF04170 NlpE N-terminal domain VA208B3_36350 PF17185 NlpE C-terminal OB domain VA208B3_36360 PF02001 Protein of unknown function DUF134 VA208B3_36410 PF00679 Elongation factor G C-terminus VA208B3_36410 PF14492 Elongation Factor G, domain II VA208B3_36410 PF03764 Elongation factor G, domain IV VA208B3_36410 PF00009 Elongation factor Tu GTP binding domain VA208B3_36410 PF03144 Elongation factor Tu domain 2 VA208B3_36420 PF13378 Enolase C-terminal domain-like VA208B3_36420 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VA208B3_36440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_36440 PF03466 LysR substrate binding domain VA208B3_36460 PF00376 MerR family regulatory protein VA208B3_36460 PF09278 MerR, DNA binding VA208B3_36510 PF13091 PLD-like domain VA208B3_36520 PF13533 Biotin-lipoyl like VA208B3_36530 PF00873 AcrB/AcrD/AcrF family VA208B3_36590 PF00005 ABC transporter VA208B3_36590 PF08402 TOBE domain VA208B3_36640 PF07702 UTRA domain VA208B3_36640 PF00392 Bacterial regulatory proteins, gntR family VA208B3_36650 PF02028 BCCT, betaine/carnitine/choline family transporter VA208B3_36660 PF02837 Glycosyl hydrolases family 2, sugar binding domain VA208B3_36660 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VA208B3_36660 PF00703 Glycosyl hydrolases family 2 VA208B3_36660 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VA208B3_36670 PF00196 Bacterial regulatory proteins, luxR family VA208B3_36690 PF07694 5TMR of 5TMR-LYT VA208B3_36690 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_36730 PF00873 AcrB/AcrD/AcrF family VA208B3_36740 PF13533 Biotin-lipoyl like VA208B3_36750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_36750 PF03466 LysR substrate binding domain VA208B3_36770 PF13416 Bacterial extracellular solute-binding protein VA208B3_36780 PF00579 tRNA synthetases class I (W and Y) VA208B3_36810 PF00391 PEP-utilising enzyme, mobile domain VA208B3_36810 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VA208B3_36810 PF02896 PEP-utilising enzyme, TIM barrel domain VA208B3_36820 PF03618 Kinase/pyrophosphorylase VA208B3_36830 PF17763 Glutaminase/Asparaginase C-terminal domain VA208B3_36830 PF00710 Asparaginase, N-terminal VA208B3_36840 PF00709 Adenylosuccinate synthetase VA208B3_36850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_36850 PF03466 LysR substrate binding domain VA208B3_36880 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VA208B3_36890 PF12833 Helix-turn-helix domain VA208B3_36890 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VA208B3_36920 PF08240 Alcohol dehydrogenase GroES-like domain VA208B3_36920 PF00107 Zinc-binding dehydrogenase VA208B3_36930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA208B3_36950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_36950 PF03466 LysR substrate binding domain VA208B3_36960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_36960 PF03466 LysR substrate binding domain VA208B3_36980 PF00270 DEAD/DEAH box helicase VA208B3_36980 PF00271 Helicase conserved C-terminal domain VA208B3_37030 PF00155 Aminotransferase class I and II VA208B3_37040 PF12833 Helix-turn-helix domain VA208B3_37040 PF01497 Periplasmic binding protein VA208B3_37140 PF02583 Metal-sensitive transcriptional repressor VA208B3_37180 PF01872 RibD C-terminal domain VA208B3_37190 PF02909 Tetracyclin repressor-like, C-terminal domain VA208B3_37190 PF00440 Bacterial regulatory proteins, tetR family VA208B3_37200 PF02798 Glutathione S-transferase, N-terminal domain VA208B3_37210 PF07943 Penicillin-binding protein 5, C-terminal domain VA208B3_37210 PF00768 D-alanyl-D-alanine carboxypeptidase VA208B3_37260 PF00462 Glutaredoxin VA208B3_37260 PF08534 Redoxin VA208B3_37270 PF00962 Adenosine/AMP deaminase VA208B3_37300 PF00313 'Cold-shock' DNA-binding domain VA208B3_37310 PF02678 Pirin VA208B3_37310 PF05726 Pirin C-terminal cupin domain VA208B3_37320 PF01734 Patatin-like phospholipase VA208B3_37340 PF01047 MarR family VA208B3_37370 PF07690 Major Facilitator Superfamily VA208B3_37380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VA208B3_37390 PF08019 Phosphoethanolamine transferase EptA/EptB VA208B3_37390 PF00884 Sulfatase VA208B3_37400 PF01219 Prokaryotic diacylglycerol kinase VA208B3_37430 PF00672 HAMP domain VA208B3_37430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_37430 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_37440 PF00072 Response regulator receiver domain VA208B3_37440 PF00486 Transcriptional regulatory protein, C terminal VA208B3_37450 PF00106 short chain dehydrogenase VA208B3_37480 PF01323 DSBA-like thioredoxin domain VA208B3_37510 PF00255 Glutathione peroxidase VA208B3_37520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VA208B3_37540 PF07690 Major Facilitator Superfamily VA208B3_37560 PF01966 HD domain VA208B3_37580 PF07969 Amidohydrolase family VA208B3_37590 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VA208B3_37600 PF00571 CBS domain VA208B3_37600 PF01769 Divalent cation transporter VA208B3_37600 PF03448 MgtE intracellular N domain VA208B3_37610 PF03109 ABC1 family VA208B3_37630 PF00155 Aminotransferase class I and II VA208B3_37630 PF00392 Bacterial regulatory proteins, gntR family VA208B3_37640 PF13520 Amino acid permease VA208B3_37650 PF13404 AsnC-type helix-turn-helix domain VA208B3_37650 PF01037 Lrp/AsnC ligand binding domain VA208B3_37660 PF03466 LysR substrate binding domain VA208B3_37660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_37700 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VA208B3_37700 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VA208B3_37710 PF00072 Response regulator receiver domain VA208B3_37710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_37710 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_37710 PF01627 Hpt domain VA208B3_37710 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VA208B3_37710 PF00672 HAMP domain VA208B3_37720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VA208B3_37730 PF01554 MatE VA208B3_37740 PF04363 Protein of unknown function (DUF496) VA208B3_37760 PF04337 Protein of unknown function, DUF480 VA208B3_37770 PF01541 GIY-YIG catalytic domain VA208B3_37780 PF13407 Periplasmic binding protein domain VA208B3_37790 PF00072 Response regulator receiver domain VA208B3_37790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_37790 PF09308 LuxQ, periplasmic VA208B3_37790 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_37810 PF00529 HlyD membrane-fusion protein of T1SS VA208B3_37810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_37850 PF01037 Lrp/AsnC ligand binding domain VA208B3_37910 PF02355 Protein export membrane protein VA208B3_37910 PF13721 SecD export protein N-terminal TM region VA208B3_37910 PF07549 SecD/SecF GG Motif VA208B3_37920 PF07549 SecD/SecF GG Motif VA208B3_37920 PF02355 Protein export membrane protein VA208B3_37940 PF01810 LysE type translocator VA208B3_37950 PF00106 short chain dehydrogenase VA208B3_37960 PF00108 Thiolase, N-terminal domain VA208B3_37960 PF02803 Thiolase, C-terminal domain VA208B3_37980 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VA208B3_37980 PF00561 alpha/beta hydrolase fold VA208B3_38000 PF03264 NapC/NirT cytochrome c family, N-terminal region VA208B3_38010 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VA208B3_38020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA208B3_38020 PF00384 Molybdopterin oxidoreductase VA208B3_38020 PF01568 Molydopterin dinucleotide binding domain VA208B3_38040 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VA208B3_38040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_38040 PF00672 HAMP domain VA208B3_38040 PF07730 Histidine kinase VA208B3_38050 PF00196 Bacterial regulatory proteins, luxR family VA208B3_38050 PF00072 Response regulator receiver domain VA208B3_38080 PF07687 Peptidase dimerisation domain VA208B3_38080 PF01546 Peptidase family M20/M25/M40 VA208B3_38090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA208B3_38100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_38110 PF00873 AcrB/AcrD/AcrF family VA208B3_38120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_38120 PF12729 Four helix bundle sensory module for signal transduction VA208B3_38120 PF00672 HAMP domain VA208B3_38130 PF00472 RF-1 domain VA208B3_38140 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_38150 PF00691 OmpA family VA208B3_38150 PF01389 OmpA-like transmembrane domain VA208B3_38160 PF00793 DAHP synthetase I family VA208B3_38170 PF07690 Major Facilitator Superfamily VA208B3_38180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_38180 PF08447 PAS fold VA208B3_38190 PF02779 Transketolase, pyrimidine binding domain VA208B3_38190 PF02780 Transketolase, C-terminal domain VA208B3_38190 PF00456 Transketolase, thiamine diphosphate binding domain VA208B3_38200 PF00923 Transaldolase/Fructose-6-phosphate aldolase VA208B3_38220 PF08329 Chitinase A, N-terminal domain VA208B3_38220 PF00704 Glycosyl hydrolases family 18 VA208B3_38230 PF00563 EAL domain VA208B3_38230 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_38230 PF03707 Bacterial signalling protein N terminal repeat VA208B3_38240 PF00581 Rhodanese-like domain VA208B3_38270 PF00899 ThiF family VA208B3_38280 PF00994 Probable molybdopterin binding domain VA208B3_38280 PF03454 MoeA C-terminal region (domain IV) VA208B3_38280 PF03453 MoeA N-terminal region (domain I and II) VA208B3_38290 PF01227 GTP cyclohydrolase I VA208B3_38300 PF01566 Natural resistance-associated macrophage protein VA208B3_38320 PF00654 Voltage gated chloride channel VA208B3_38350 PF00248 Aldo/keto reductase family VA208B3_38360 PF00072 Response regulator receiver domain VA208B3_38380 PF01256 Carbohydrate kinase VA208B3_38380 PF03853 YjeF-related protein N-terminus VA208B3_38390 PF00478 IMP dehydrogenase / GMP reductase domain VA208B3_38400 PF00501 AMP-binding enzyme VA208B3_38400 PF13193 AMP-binding enzyme C-terminal domain VA208B3_38410 PF00766 Electron transfer flavoprotein FAD-binding domain VA208B3_38410 PF01012 Electron transfer flavoprotein domain VA208B3_38420 PF01012 Electron transfer flavoprotein domain VA208B3_38440 PF12399 Branched-chain amino acid ATP-binding cassette transporter VA208B3_38440 PF00005 ABC transporter VA208B3_38490 PF00005 ABC transporter VA208B3_38500 PF00501 AMP-binding enzyme VA208B3_38500 PF14535 AMP-binding enzyme C-terminal domain VA208B3_38530 PF00034 Cytochrome c VA208B3_38550 PF13411 MerR HTH family regulatory protein VA208B3_38560 PF02627 Carboxymuconolactone decarboxylase family VA208B3_38570 PF02567 Phenazine biosynthesis-like protein VA208B3_38580 PF02322 Cytochrome bd terminal oxidase subunit II VA208B3_38590 PF01654 Cytochrome bd terminal oxidase subunit I VA208B3_38600 PF00155 Aminotransferase class I and II VA208B3_38600 PF00392 Bacterial regulatory proteins, gntR family VA208B3_38610 PF12464 Maltose acetyltransferase VA208B3_38610 PF14602 Hexapeptide repeat of succinyl-transferase VA208B3_38620 PF12795 Mechanosensitive ion channel porin domain VA208B3_38620 PF12794 Mechanosensitive ion channel inner membrane domain 1 VA208B3_38620 PF00924 Mechanosensitive ion channel VA208B3_38650 PF00672 HAMP domain VA208B3_38650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_38650 PF01627 Hpt domain VA208B3_38650 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_38650 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VA208B3_38650 PF00072 Response regulator receiver domain VA208B3_38660 PF00682 HMGL-like VA208B3_38670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VA208B3_38670 PF00364 Biotin-requiring enzyme VA208B3_38670 PF00289 Biotin carboxylase, N-terminal domain VA208B3_38670 PF02785 Biotin carboxylase C-terminal domain VA208B3_38670 PF18140 Propionyl-coenzyme A carboxylase BT domain VA208B3_38680 PF00378 Enoyl-CoA hydratase/isomerase VA208B3_38690 PF01039 Carboxyl transferase domain VA208B3_38700 PF02770 Acyl-CoA dehydrogenase, middle domain VA208B3_38700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA208B3_38700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA208B3_38710 PF09278 MerR, DNA binding VA208B3_38710 PF00376 MerR family regulatory protein VA208B3_38720 PF02803 Thiolase, C-terminal domain VA208B3_38720 PF00108 Thiolase, N-terminal domain VA208B3_38730 PF00171 Aldehyde dehydrogenase family VA208B3_38740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA208B3_38740 PF02770 Acyl-CoA dehydrogenase, middle domain VA208B3_38740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA208B3_38750 PF00378 Enoyl-CoA hydratase/isomerase VA208B3_38770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA208B3_38770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA208B3_38790 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_38790 PF17151 Periplasmic sensor domain VA208B3_38800 PF00440 Bacterial regulatory proteins, tetR family VA208B3_38800 PF13977 BetI-type transcriptional repressor, C-terminal VA208B3_38810 PF00171 Aldehyde dehydrogenase family VA208B3_38820 PF00732 GMC oxidoreductase VA208B3_38820 PF05199 GMC oxidoreductase VA208B3_38830 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VA208B3_38840 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_38850 PF00571 CBS domain VA208B3_38850 PF00005 ABC transporter VA208B3_38860 PF00881 Nitroreductase family VA208B3_38880 PF16200 C-terminal region of band_7 VA208B3_38880 PF01145 SPFH domain / Band 7 family VA208B3_38900 PF13188 PAS domain VA208B3_38900 PF03707 Bacterial signalling protein N terminal repeat VA208B3_38900 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_38900 PF00563 EAL domain VA208B3_38910 PF03150 Di-haem cytochrome c peroxidase VA208B3_38910 PF00034 Cytochrome c VA208B3_38920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_38920 PF00072 Response regulator receiver domain VA208B3_38920 PF09308 LuxQ, periplasmic VA208B3_38920 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_38950 PF04116 Fatty acid hydroxylase superfamily VA208B3_39020 PF01048 Phosphorylase superfamily VA208B3_39030 PF00563 EAL domain VA208B3_39030 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_39040 PF05025 RbsD / FucU transport protein family VA208B3_39050 PF00005 ABC transporter VA208B3_39060 PF02653 Branched-chain amino acid transport system / permease component VA208B3_39070 PF13407 Periplasmic binding protein domain VA208B3_39080 PF00294 pfkB family carbohydrate kinase VA208B3_39090 PF00356 Bacterial regulatory proteins, lacI family VA208B3_39110 PF04973 Nicotinamide mononucleotide transporter VA208B3_39120 PF01048 Phosphorylase superfamily VA208B3_39150 PF01497 Periplasmic binding protein VA208B3_39160 PF01032 FecCD transport family VA208B3_39170 PF01032 FecCD transport family VA208B3_39180 PF00005 ABC transporter VA208B3_39190 PF13411 MerR HTH family regulatory protein VA208B3_39210 PF07715 TonB-dependent Receptor Plug Domain VA208B3_39210 PF00593 TonB dependent receptor VA208B3_39270 PF12805 FUSC-like inner membrane protein yccS VA208B3_39280 PF12462 DNA helicase IV / RNA helicase N terminal VA208B3_39280 PF00580 UvrD/REP helicase N-terminal domain VA208B3_39280 PF13361 UvrD-like helicase C-terminal domain VA208B3_39290 PF02142 MGS-like domain VA208B3_39300 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA208B3_39310 PF00072 Response regulator receiver domain VA208B3_39310 PF01627 Hpt domain VA208B3_39310 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_39310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_39310 PF00672 HAMP domain VA208B3_39340 PF00486 Transcriptional regulatory protein, C terminal VA208B3_39340 PF00072 Response regulator receiver domain VA208B3_39350 PF00884 Sulfatase VA208B3_39350 PF16385 Domain of unknown function VA208B3_39360 PF00884 Sulfatase VA208B3_39380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_39380 PF03466 LysR substrate binding domain VA208B3_39390 PF00884 Sulfatase VA208B3_39400 PF13186 Iron-sulfur cluster-binding domain VA208B3_39400 PF04055 Radical SAM superfamily VA208B3_39410 PF07726 ATPase family associated with various cellular activities (AAA) VA208B3_39410 PF17863 AAA lid domain VA208B3_39440 PF00092 von Willebrand factor type A domain VA208B3_39470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VA208B3_39480 PF03466 LysR substrate binding domain VA208B3_39480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_39490 PF00781 Diacylglycerol kinase catalytic domain VA208B3_39500 PF04076 Bacterial OB fold (BOF) protein VA208B3_39530 PF04055 Radical SAM superfamily VA208B3_39530 PF13186 Iron-sulfur cluster-binding domain VA208B3_39550 PF08774 VRR-NUC domain VA208B3_39550 PF18081 Fanconi anemia-associated nuclease SAP domain VA208B3_39580 PF01435 Peptidase family M48 VA208B3_39590 PF04011 LemA family VA208B3_39600 PF03606 C4-dicarboxylate anaerobic carrier VA208B3_39640 PF00072 Response regulator receiver domain VA208B3_39640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_39650 PF00155 Aminotransferase class I and II VA208B3_39660 PF01926 50S ribosome-binding GTPase VA208B3_39680 PF01752 Collagenase VA208B3_39680 PF08453 Peptidase family M9 N-terminal VA208B3_39680 PF04151 Bacterial pre-peptidase C-terminal domain VA208B3_39700 PF12833 Helix-turn-helix domain VA208B3_39710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_39710 PF03466 LysR substrate binding domain VA208B3_39750 PF00263 Bacterial type II and III secretion system protein VA208B3_39750 PF13629 Pilus formation protein N terminal region VA208B3_39750 PF04972 BON domain VA208B3_39780 PF00437 Type II/IV secretion system protein VA208B3_39850 PF05736 OprF membrane domain VA208B3_39850 PF00691 OmpA family VA208B3_39870 PF03466 LysR substrate binding domain VA208B3_39870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_39880 PF03466 LysR substrate binding domain VA208B3_39880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_39900 PF00072 Response regulator receiver domain VA208B3_39900 PF09456 RcsC Alpha-Beta-Loop (ABL) VA208B3_39900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_39900 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_39910 PF13188 PAS domain VA208B3_39910 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_39910 PF00563 EAL domain VA208B3_39910 PF03707 Bacterial signalling protein N terminal repeat VA208B3_39920 PF00072 Response regulator receiver domain VA208B3_39920 PF00196 Bacterial regulatory proteins, luxR family VA208B3_39930 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_39950 PF00196 Bacterial regulatory proteins, luxR family VA208B3_39950 PF00072 Response regulator receiver domain VA208B3_39990 PF00072 Response regulator receiver domain VA208B3_39990 PF01584 CheW-like domain VA208B3_40020 PF00892 EamA-like transporter family VA208B3_40040 PF01569 PAP2 superfamily VA208B3_40060 PF04151 Bacterial pre-peptidase C-terminal domain VA208B3_40060 PF07504 Fungalysin/Thermolysin Propeptide Motif VA208B3_40060 PF03413 Peptidase propeptide and YPEB domain VA208B3_40060 PF01447 Thermolysin metallopeptidase, catalytic domain VA208B3_40060 PF02868 Thermolysin metallopeptidase, alpha-helical domain VA208B3_40070 PF00893 Small Multidrug Resistance protein VA208B3_40080 PF00892 EamA-like transporter family VA208B3_40120 PF00171 Aldehyde dehydrogenase family VA208B3_40130 PF00939 Sodium:sulfate symporter transmembrane region VA208B3_40140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_40140 PF17203 Single cache domain 3 VA208B3_40140 PF00989 PAS fold VA208B3_40140 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VA208B3_40150 PF12431 Transcriptional regulator VA208B3_40150 PF00072 Response regulator receiver domain VA208B3_40170 PF13187 4Fe-4S dicluster domain VA208B3_40170 PF01645 Conserved region in glutamate synthase VA208B3_40180 PF00141 Peroxidase VA208B3_40190 PF09722 Protein of unknown function (DUF2384) VA208B3_40210 PF01757 Acyltransferase family VA208B3_40230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA208B3_40240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VA208B3_40280 PF00571 CBS domain VA208B3_40280 PF01769 Divalent cation transporter VA208B3_40280 PF03448 MgtE intracellular N domain VA208B3_40320 PF01327 Polypeptide deformylase VA208B3_40330 PF09278 MerR, DNA binding VA208B3_40330 PF00376 MerR family regulatory protein VA208B3_40350 PF02253 Phospholipase A1 VA208B3_40390 PF00664 ABC transporter transmembrane region VA208B3_40390 PF00005 ABC transporter VA208B3_40400 PF02811 PHP domain VA208B3_40400 PF00929 Exonuclease VA208B3_40400 PF14579 Helix-hairpin-helix motif VA208B3_40400 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VA208B3_40400 PF07733 Bacterial DNA polymerase III alpha NTPase domain VA208B3_40400 PF11490 DNA polymerase III polC-type N-terminus II VA208B3_40410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_40410 PF03466 LysR substrate binding domain VA208B3_40420 PF01039 Carboxyl transferase domain VA208B3_40420 PF17848 Acetyl-coA carboxylase zinc finger domain VA208B3_40430 PF01212 Beta-eliminating lyase VA208B3_40470 PF02347 Glycine cleavage system P-protein VA208B3_40480 PF01597 Glycine cleavage H-protein VA208B3_40490 PF00464 Serine hydroxymethyltransferase VA208B3_40510 PF01571 Aminomethyltransferase folate-binding domain VA208B3_40510 PF08669 Glycine cleavage T-protein C-terminal barrel domain VA208B3_40550 PF00873 AcrB/AcrD/AcrF family VA208B3_40570 PF02378 Phosphotransferase system, EIIC VA208B3_40570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA208B3_40580 PF00294 pfkB family carbohydrate kinase VA208B3_40590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA208B3_40590 PF00381 PTS HPr component phosphorylation site VA208B3_40600 PF00356 Bacterial regulatory proteins, lacI family VA208B3_40600 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VA208B3_40630 PF00563 EAL domain VA208B3_40630 PF01590 GAF domain VA208B3_40630 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_40630 PF00989 PAS fold VA208B3_40640 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_40650 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_40660 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_40670 PF00005 ABC transporter VA208B3_40680 PF00224 Pyruvate kinase, barrel domain VA208B3_40680 PF02887 Pyruvate kinase, alpha/beta domain VA208B3_40690 PF07690 Major Facilitator Superfamily VA208B3_40710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_40710 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_40710 PF00672 HAMP domain VA208B3_40720 PF14532 Sigma-54 interaction domain VA208B3_40720 PF02954 Bacterial regulatory protein, Fis family VA208B3_40720 PF00072 Response regulator receiver domain VA208B3_40740 PF00465 Iron-containing alcohol dehydrogenase VA208B3_40750 PF12833 Helix-turn-helix domain VA208B3_40750 PF06719 AraC-type transcriptional regulator N-terminus VA208B3_40760 PF06483 Chitinase C VA208B3_40760 PF00704 Glycosyl hydrolases family 18 VA208B3_40770 PF00483 Nucleotidyl transferase VA208B3_40780 PF01268 Formate--tetrahydrofolate ligase VA208B3_40790 PF00294 pfkB family carbohydrate kinase VA208B3_40820 PF11849 Domain of unknown function (DUF3369) VA208B3_40830 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_40840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_40860 PF04336 Acyl carrier protein phosphodiesterase VA208B3_40870 PF00270 DEAD/DEAH box helicase VA208B3_40870 PF00271 Helicase conserved C-terminal domain VA208B3_40880 PF12792 CSS motif domain associated with EAL VA208B3_40880 PF00563 EAL domain VA208B3_40910 PF01292 Prokaryotic cytochrome b561 VA208B3_40920 PF04264 YceI-like domain VA208B3_40930 PF01226 Formate/nitrite transporter VA208B3_40940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_40940 PF03466 LysR substrate binding domain VA208B3_40950 PF06496 Protein of unknown function (DUF1097) VA208B3_40960 PF11398 Protein of unknown function (DUF2813) VA208B3_40970 PF00149 Calcineurin-like phosphoesterase VA208B3_40970 PF02872 5'-nucleotidase, C-terminal domain VA208B3_40980 PF03741 Integral membrane protein TerC family VA208B3_41010 PF12262 Bacterial virulence factor lipase N-terminal VA208B3_41020 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA208B3_41050 PF03061 Thioesterase superfamily VA208B3_41070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VA208B3_41070 PF12793 Sugar transport-related sRNA regulator N-term VA208B3_41130 PF00226 DnaJ domain VA208B3_41130 PF01556 DnaJ C terminal domain VA208B3_41130 PF00684 DnaJ central domain VA208B3_41150 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_41150 PF13188 PAS domain VA208B3_41150 PF03707 Bacterial signalling protein N terminal repeat VA208B3_41150 PF00563 EAL domain VA208B3_41160 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VA208B3_41160 PF12241 Trans-2-enoyl-CoA reductase catalytic region VA208B3_41160 PF07055 Enoyl reductase FAD binding domain VA208B3_41170 PF13472 GDSL-like Lipase/Acylhydrolase family VA208B3_41180 PF00005 ABC transporter VA208B3_41210 PF02626 Carboxyltransferase domain, subdomain A and B VA208B3_41220 PF02682 Carboxyltransferase domain, subdomain C and D VA208B3_41230 PF03746 LamB/YcsF family VA208B3_41240 PF13426 PAS domain VA208B3_41240 PF00563 EAL domain VA208B3_41240 PF05231 MASE1 VA208B3_41240 PF08447 PAS fold VA208B3_41240 PF08448 PAS fold VA208B3_41240 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_41250 PF16363 GDP-mannose 4,6 dehydratase VA208B3_41260 PF07715 TonB-dependent Receptor Plug Domain VA208B3_41260 PF00593 TonB dependent receptor VA208B3_41270 PF03466 LysR substrate binding domain VA208B3_41270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_41280 PF13380 CoA binding domain VA208B3_41280 PF13607 Succinyl-CoA ligase like flavodoxin domain VA208B3_41280 PF00583 Acetyltransferase (GNAT) family VA208B3_41300 PF07478 D-ala D-ala ligase C-terminus VA208B3_41300 PF01820 D-ala D-ala ligase N-terminus VA208B3_41320 PF01253 Translation initiation factor SUI1 VA208B3_41530 PF05707 Zonular occludens toxin (Zot) VA208B3_41640 PF03466 LysR substrate binding domain VA208B3_41640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_41660 PF00582 Universal stress protein family VA208B3_41670 PF03701 Uncharacterised protein family (UPF0181) VA208B3_41700 PF00486 Transcriptional regulatory protein, C terminal VA208B3_41700 PF00072 Response regulator receiver domain VA208B3_41720 PF02233 NAD(P) transhydrogenase beta subunit VA208B3_41730 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VA208B3_41730 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VA208B3_41730 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VA208B3_41760 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_41780 PF00360 Phytochrome region VA208B3_41780 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_41780 PF01590 GAF domain VA208B3_41780 PF00563 EAL domain VA208B3_41800 PF00005 ABC transporter VA208B3_41800 PF03459 TOBE domain VA208B3_41810 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_41830 PF07685 CobB/CobQ-like glutamine amidotransferase domain VA208B3_41840 PF04076 Bacterial OB fold (BOF) protein VA208B3_41860 PF08443 RimK-like ATP-grasp domain VA208B3_41860 PF18030 RimK PreATP-grasp domain VA208B3_41870 PF00155 Aminotransferase class I and II VA208B3_41880 PF12833 Helix-turn-helix domain VA208B3_41890 PF01554 MatE VA208B3_41910 PF03477 ATP cone domain VA208B3_41910 PF13597 Anaerobic ribonucleoside-triphosphate reductase VA208B3_41930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VA208B3_41940 PF00873 AcrB/AcrD/AcrF family VA208B3_41960 PF04143 Sulphur transport VA208B3_41990 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_41990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VA208B3_42000 PF00384 Molybdopterin oxidoreductase VA208B3_42010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_42010 PF03466 LysR substrate binding domain VA208B3_42020 PF02634 FdhD/NarQ family VA208B3_42030 PF07690 Major Facilitator Superfamily VA208B3_42040 PF00072 Response regulator receiver domain VA208B3_42040 PF00196 Bacterial regulatory proteins, luxR family VA208B3_42050 PF05231 MASE1 VA208B3_42050 PF07730 Histidine kinase VA208B3_42050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_42060 PF07690 Major Facilitator Superfamily VA208B3_42070 PF01238 Phosphomannose isomerase type I VA208B3_42110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VA208B3_42110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VA208B3_42120 PF00085 Thioredoxin VA208B3_42130 PF07690 Major Facilitator Superfamily VA208B3_42140 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_42140 PF12833 Helix-turn-helix domain VA208B3_42140 PF07494 Two component regulator propeller VA208B3_42140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_42140 PF00072 Response regulator receiver domain VA208B3_42140 PF07495 Y_Y_Y domain VA208B3_42150 PF01554 MatE VA208B3_42160 PF11756 Nitrous oxide-stimulated promoter VA208B3_42190 PF07715 TonB-dependent Receptor Plug Domain VA208B3_42190 PF00593 TonB dependent receptor VA208B3_42210 PF03605 Anaerobic c4-dicarboxylate membrane transporter VA208B3_42240 PF10414 Sirohaem synthase dimerisation region VA208B3_42240 PF14824 Sirohaem biosynthesis protein central VA208B3_42240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA208B3_42250 PF01226 Formate/nitrite transporter VA208B3_42260 PF13806 Rieske-like [2Fe-2S] domain VA208B3_42270 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_42270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA208B3_42270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA208B3_42270 PF18267 Rubredoxin NAD+ reductase C-terminal domain VA208B3_42270 PF04324 BFD-like [2Fe-2S] binding domain VA208B3_42280 PF14760 Rnk N-terminus VA208B3_42280 PF01272 Transcription elongation factor, GreA/GreB, C-term VA208B3_42340 PF06965 Na+/H+ antiporter 1 VA208B3_42340 PF13462 Thioredoxin VA208B3_42380 PF00128 Alpha amylase, catalytic domain VA208B3_42380 PF09154 Domain of unknown function (DUF1939) VA208B3_42390 PF00672 HAMP domain VA208B3_42390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_42400 PF01168 Alanine racemase, N-terminal domain VA208B3_42400 PF00842 Alanine racemase, C-terminal domain VA208B3_42430 PF09330 D-lactate dehydrogenase, membrane binding VA208B3_42430 PF01565 FAD binding domain VA208B3_42440 PF03466 LysR substrate binding domain VA208B3_42440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_42450 PF05762 VWA domain containing CoxE-like protein VA208B3_42460 PF12592 Protein of unknown function (DUF3763) VA208B3_42460 PF17868 AAA lid domain VA208B3_42460 PF07728 AAA domain (dynein-related subfamily) VA208B3_42480 PF01212 Beta-eliminating lyase VA208B3_42490 PF00034 Cytochrome c VA208B3_42500 PF03606 C4-dicarboxylate anaerobic carrier VA208B3_42520 PF07690 Major Facilitator Superfamily VA208B3_42540 PF08212 Lipocalin-like domain VA208B3_42580 PF13476 AAA domain VA208B3_42590 PF12320 Type 5 capsule protein repressor C-terminal domain VA208B3_42590 PF00149 Calcineurin-like phosphoesterase VA208B3_42620 PF04717 Type VI secretion system, phage-baseplate injector VA208B3_42620 PF06715 Gp5 C-terminal repeat (3 copies) VA208B3_42640 PF10431 C-terminal, D2-small domain, of ClpB protein VA208B3_42640 PF17871 AAA lid domain VA208B3_42640 PF07724 AAA domain (Cdc48 subfamily) VA208B3_42640 PF00004 ATPase family associated with various cellular activities (AAA) VA208B3_42660 PF05947 Type VI secretion system, TssF VA208B3_42690 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath VA208B3_42700 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath VA208B3_42710 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 VA208B3_42750 PF06761 Intracellular multiplication and human macrophage-killing VA208B3_42750 PF06744 Type VI secretion protein IcmF C-terminal VA208B3_42750 PF14331 ImcF-related N-terminal domain VA208B3_42760 PF13677 Membrane MotB of proton-channel complex MotA/MotB VA208B3_42760 PF00691 OmpA family VA208B3_42770 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE VA208B3_42800 PF03793 PASTA domain VA208B3_42800 PF00069 Protein kinase domain VA208B3_42840 PF00211 Adenylate and Guanylate cyclase catalytic domain VA208B3_42840 PF00072 Response regulator receiver domain VA208B3_42870 PF00440 Bacterial regulatory proteins, tetR family VA208B3_42870 PF08361 MAATS-type transcriptional repressor, C-terminal region VA208B3_42900 PF04324 BFD-like [2Fe-2S] binding domain VA208B3_42900 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VA208B3_42900 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VA208B3_42900 PF07992 Pyridine nucleotide-disulphide oxidoreductase VA208B3_42900 PF13806 Rieske-like [2Fe-2S] domain VA208B3_42900 PF18267 Rubredoxin NAD+ reductase C-terminal domain VA208B3_42910 PF00005 ABC transporter VA208B3_42920 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_42940 PF08376 Nitrate and nitrite sensing VA208B3_42940 PF03861 ANTAR domain VA208B3_42950 PF01738 Dienelactone hydrolase family VA208B3_42960 PF02885 Glycosyl transferase family, helical bundle domain VA208B3_42960 PF00591 Glycosyl transferase family, a/b domain VA208B3_42970 PF10414 Sirohaem synthase dimerisation region VA208B3_42970 PF14824 Sirohaem biosynthesis protein central VA208B3_42970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VA208B3_42980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA208B3_42980 PF01568 Molydopterin dinucleotide binding domain VA208B3_42980 PF00384 Molybdopterin oxidoreductase VA208B3_42990 PF00583 Acetyltransferase (GNAT) family VA208B3_43000 PF03222 Tryptophan/tyrosine permease family VA208B3_43010 PF00072 Response regulator receiver domain VA208B3_43010 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_43030 PF01483 Proprotein convertase P-domain VA208B3_43030 PF00082 Subtilase family VA208B3_43050 PF00245 Alkaline phosphatase VA208B3_43080 PF00072 Response regulator receiver domain VA208B3_43080 PF00486 Transcriptional regulatory protein, C terminal VA208B3_43130 PF04314 Copper chaperone PCu(A)C VA208B3_43140 PF00012 Hsp70 protein VA208B3_43170 PF00676 Dehydrogenase E1 component VA208B3_43180 PF02780 Transketolase, C-terminal domain VA208B3_43180 PF02779 Transketolase, pyrimidine binding domain VA208B3_43190 PF02817 e3 binding domain VA208B3_43190 PF00364 Biotin-requiring enzyme VA208B3_43190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VA208B3_43210 PF00043 Glutathione S-transferase, C-terminal domain VA208B3_43210 PF02798 Glutathione S-transferase, N-terminal domain VA208B3_43220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_43220 PF03466 LysR substrate binding domain VA208B3_43240 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_43250 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_43260 PF00497 Bacterial extracellular solute-binding proteins, family 3 VA208B3_43270 PF00005 ABC transporter VA208B3_43280 PF03466 LysR substrate binding domain VA208B3_43280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_43310 PF03466 LysR substrate binding domain VA208B3_43310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_43320 PF01565 FAD binding domain VA208B3_43320 PF08031 Berberine and berberine like VA208B3_43330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VA208B3_43340 PF01040 UbiA prenyltransferase family VA208B3_43360 PF00510 Cytochrome c oxidase subunit III VA208B3_43370 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA208B3_43380 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VA208B3_43380 PF06481 COX Aromatic Rich Motif VA208B3_43400 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA208B3_43400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA208B3_43410 PF00378 Enoyl-CoA hydratase/isomerase VA208B3_43420 PF00378 Enoyl-CoA hydratase/isomerase VA208B3_43430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA208B3_43430 PF02770 Acyl-CoA dehydrogenase, middle domain VA208B3_43430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA208B3_43440 PF00171 Aldehyde dehydrogenase family VA208B3_43450 PF00108 Thiolase, N-terminal domain VA208B3_43450 PF02803 Thiolase, C-terminal domain VA208B3_43460 PF09278 MerR, DNA binding VA208B3_43460 PF00376 MerR family regulatory protein VA208B3_43470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VA208B3_43470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VA208B3_43470 PF02770 Acyl-CoA dehydrogenase, middle domain VA208B3_43480 PF01039 Carboxyl transferase domain VA208B3_43490 PF00378 Enoyl-CoA hydratase/isomerase VA208B3_43500 PF00682 HMGL-like VA208B3_43510 PF10063 Uncharacterized integral membrane protein (DUF2301) VA208B3_43530 PF13426 PAS domain VA208B3_43530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_43530 PF08447 PAS fold VA208B3_43540 PF00871 Acetokinase family VA208B3_43550 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_43550 PF00563 EAL domain VA208B3_43550 PF13426 PAS domain VA208B3_43560 PF03880 DbpA RNA binding domain VA208B3_43560 PF00270 DEAD/DEAH box helicase VA208B3_43560 PF00271 Helicase conserved C-terminal domain VA208B3_43570 PF08206 Ribonuclease B OB domain VA208B3_43570 PF00773 RNB domain VA208B3_43570 PF00575 S1 RNA binding domain VA208B3_43580 PF12833 Helix-turn-helix domain VA208B3_43600 PF12849 PBP superfamily domain VA208B3_43610 PF01575 MaoC like domain VA208B3_43620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_43620 PF03466 LysR substrate binding domain VA208B3_43630 PF13186 Iron-sulfur cluster-binding domain VA208B3_43630 PF04055 Radical SAM superfamily VA208B3_43640 PF00884 Sulfatase VA208B3_43650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_43650 PF03466 LysR substrate binding domain VA208B3_43670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_43670 PF00672 HAMP domain VA208B3_43670 PF12729 Four helix bundle sensory module for signal transduction VA208B3_43680 PF00005 ABC transporter VA208B3_43690 PF12792 CSS motif domain associated with EAL VA208B3_43690 PF00563 EAL domain VA208B3_43730 PF00270 DEAD/DEAH box helicase VA208B3_43730 PF00271 Helicase conserved C-terminal domain VA208B3_43740 PF07683 Cobalamin synthesis protein cobW C-terminal domain VA208B3_43740 PF02492 CobW/HypB/UreG, nucleotide-binding domain VA208B3_43760 PF01470 Pyroglutamyl peptidase VA208B3_43780 PF00291 Pyridoxal-phosphate dependent enzyme VA208B3_43790 PF09905 DNA-binding protein VF530 VA208B3_43800 PF00270 DEAD/DEAH box helicase VA208B3_43800 PF00271 Helicase conserved C-terminal domain VA208B3_43810 PF12843 Putative quorum-sensing-regulated virulence factor VA208B3_43850 PF01329 Pterin 4 alpha carbinolamine dehydratase VA208B3_43860 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VA208B3_43870 PF00501 AMP-binding enzyme VA208B3_43870 PF13193 AMP-binding enzyme C-terminal domain VA208B3_43890 PF03466 LysR substrate binding domain VA208B3_43890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_43940 PF00892 EamA-like transporter family VA208B3_43970 PF00465 Iron-containing alcohol dehydrogenase VA208B3_43980 PF07995 Glucose / Sorbosone dehydrogenase VA208B3_44000 PF00210 Ferritin-like domain VA208B3_44010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_44010 PF17200 Single Cache domain 2 VA208B3_44010 PF00672 HAMP domain VA208B3_44040 PF12704 MacB-like periplasmic core domain VA208B3_44040 PF02687 FtsX-like permease family VA208B3_44040 PF00005 ABC transporter VA208B3_44050 PF00005 ABC transporter VA208B3_44050 PF02687 FtsX-like permease family VA208B3_44050 PF12704 MacB-like periplasmic core domain VA208B3_44080 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_44090 PF08447 PAS fold VA208B3_44090 PF13426 PAS domain VA208B3_44090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_44100 PF03889 Alternative ribosome-rescue factor A VA208B3_44120 PF00313 'Cold-shock' DNA-binding domain VA208B3_44180 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VA208B3_44180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VA208B3_44190 PF01040 UbiA prenyltransferase family VA208B3_44200 PF02628 Cytochrome oxidase assembly protein VA208B3_44240 PF00510 Cytochrome c oxidase subunit III VA208B3_44250 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VA208B3_44260 PF00115 Cytochrome C and Quinol oxidase polypeptide I VA208B3_44270 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VA208B3_44270 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VA208B3_44290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VA208B3_44290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VA208B3_44290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VA208B3_44290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VA208B3_44310 PF01810 LysE type translocator VA208B3_44320 PF12833 Helix-turn-helix domain VA208B3_44350 PF01557 Fumarylacetoacetate (FAA) hydrolase family VA208B3_44370 PF00267 Gram-negative porin VA208B3_44380 PF00892 EamA-like transporter family VA208B3_44390 PF00462 Glutaredoxin VA208B3_44420 PF07690 Major Facilitator Superfamily VA208B3_44430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_44430 PF03466 LysR substrate binding domain VA208B3_44440 PF00563 EAL domain VA208B3_44440 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_44440 PF08447 PAS fold VA208B3_44440 PF08448 PAS fold VA208B3_44450 PF01476 LysM domain VA208B3_44450 PF08525 Opacity-associated protein A N-terminal motif VA208B3_44450 PF01551 Peptidase family M23 VA208B3_44500 PF07670 Nucleoside recognition VA208B3_44510 PF02743 Cache domain VA208B3_44510 PF00672 HAMP domain VA208B3_44510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_44530 PF03222 Tryptophan/tyrosine permease family VA208B3_44590 PF00107 Zinc-binding dehydrogenase VA208B3_44590 PF08240 Alcohol dehydrogenase GroES-like domain VA208B3_44600 PF02378 Phosphotransferase system, EIIC VA208B3_44600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA208B3_44610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA208B3_44640 PF01758 Sodium Bile acid symporter family VA208B3_44660 PF01161 Phosphatidylethanolamine-binding protein VA208B3_44670 PF02567 Phenazine biosynthesis-like protein VA208B3_44680 PF10282 Lactonase, 7-bladed beta-propeller VA208B3_44690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_44690 PF00672 HAMP domain VA208B3_44710 PF00005 ABC transporter VA208B3_44750 PF12838 4Fe-4S dicluster domain VA208B3_44750 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VA208B3_44750 PF00384 Molybdopterin oxidoreductase VA208B3_44750 PF01568 Molydopterin dinucleotide binding domain VA208B3_44750 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VA208B3_44780 PF00873 AcrB/AcrD/AcrF family VA208B3_44820 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_44840 PF13302 Acetyltransferase (GNAT) domain VA208B3_44860 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VA208B3_44870 PF00873 AcrB/AcrD/AcrF family VA208B3_44880 PF13533 Biotin-lipoyl like VA208B3_44900 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VA208B3_44900 PF00326 Prolyl oligopeptidase family VA208B3_44910 PF00005 ABC transporter VA208B3_44910 PF16326 ABC transporter C-terminal domain VA208B3_44910 PF12848 ABC transporter VA208B3_44920 PF00582 Universal stress protein family VA208B3_44930 PF02525 Flavodoxin-like fold VA208B3_44940 PF00999 Sodium/hydrogen exchanger family VA208B3_44940 PF02254 TrkA-N domain VA208B3_44970 PF00128 Alpha amylase, catalytic domain VA208B3_44990 PF01752 Collagenase VA208B3_44990 PF08453 Peptidase family M9 N-terminal VA208B3_44990 PF04151 Bacterial pre-peptidase C-terminal domain VA208B3_45020 PF03466 LysR substrate binding domain VA208B3_45020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_45030 PF00210 Ferritin-like domain VA208B3_45040 PF00141 Peroxidase VA208B3_45080 PF00082 Subtilase family VA208B3_45090 PF13091 PLD-like domain VA208B3_45090 PF13087 AAA domain VA208B3_45120 PF01584 CheW-like domain VA208B3_45120 PF00072 Response regulator receiver domain VA208B3_45140 PF01243 Pyridoxamine 5'-phosphate oxidase VA208B3_45150 PF06228 Haem utilisation ChuX/HutX VA208B3_45160 PF04055 Radical SAM superfamily VA208B3_45170 PF03544 Gram-negative bacterial TonB protein C-terminal VA208B3_45180 PF01618 MotA/TolQ/ExbB proton channel family VA208B3_45190 PF02472 Biopolymer transport protein ExbD/TolR VA208B3_45210 PF01032 FecCD transport family VA208B3_45220 PF00005 ABC transporter VA208B3_45300 PF01467 Cytidylyltransferase-like VA208B3_45310 PF02540 NAD synthase VA208B3_45320 PF03473 MOSC domain VA208B3_45320 PF00111 2Fe-2S iron-sulfur cluster binding domain VA208B3_45320 PF00111 2Fe-2S iron-sulfur cluster binding domain VA208B3_45320 PF03473 MOSC domain VA208B3_45320 PF03476 MOSC N-terminal beta barrel domain VA208B3_45320 PF03476 MOSC N-terminal beta barrel domain VA208B3_45330 PF01679 Proteolipid membrane potential modulator VA208B3_45340 PF01979 Amidohydrolase family VA208B3_45350 PF05661 Protein of unknown function (DUF808) VA208B3_45410 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_45420 PF00528 Binding-protein-dependent transport system inner membrane component VA208B3_45420 PF14785 Maltose transport system permease protein MalF P2 domain VA208B3_45430 PF01547 Bacterial extracellular solute-binding protein VA208B3_45440 PF00005 ABC transporter VA208B3_45440 PF08402 TOBE domain VA208B3_45450 PF02397 Bacterial sugar transferase VA208B3_45480 PF02706 Chain length determinant protein VA208B3_45480 PF13614 AAA domain VA208B3_45480 PF13807 G-rich domain on putative tyrosine kinase VA208B3_45500 PF00534 Glycosyl transferases group 1 VA208B3_45500 PF13439 Glycosyltransferase Family 4 VA208B3_45560 PF04266 ASCH domain VA208B3_45570 PF16925 Tetracyclin repressor-like, C-terminal domain VA208B3_45570 PF00440 Bacterial regulatory proteins, tetR family VA208B3_45580 PF00107 Zinc-binding dehydrogenase VA208B3_45580 PF16884 N-terminal domain of oxidoreductase VA208B3_45590 PF13417 Glutathione S-transferase, N-terminal domain VA208B3_45600 PF06628 Catalase-related immune-responsive VA208B3_45600 PF00199 Catalase VA208B3_45610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VA208B3_45610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VA208B3_45630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA208B3_45650 PF12833 Helix-turn-helix domain VA208B3_45660 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VA208B3_45660 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VA208B3_45670 PF01238 Phosphomannose isomerase type I VA208B3_45690 PF13419 Haloacid dehalogenase-like hydrolase VA208B3_45700 PF00127 Copper binding proteins, plastocyanin/azurin family VA208B3_45710 PF00563 EAL domain VA208B3_45710 PF03707 Bacterial signalling protein N terminal repeat VA208B3_45710 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_45720 PF02386 Cation transport protein VA208B3_45730 PF02080 TrkA-C domain VA208B3_45730 PF02254 TrkA-N domain VA208B3_45740 PF00072 Response regulator receiver domain VA208B3_45740 PF00486 Transcriptional regulatory protein, C terminal VA208B3_45750 PF13493 Domain of unknown function (DUF4118) VA208B3_45750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_45750 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_45750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VA208B3_45750 PF00512 His Kinase A (phospho-acceptor) domain VA208B3_45750 PF02702 Osmosensitive K+ channel His kinase sensor domain VA208B3_45750 PF13493 Domain of unknown function (DUF4118) VA208B3_45750 PF02702 Osmosensitive K+ channel His kinase sensor domain VA208B3_45760 PF00664 ABC transporter transmembrane region VA208B3_45760 PF00005 ABC transporter VA208B3_45770 PF07715 TonB-dependent Receptor Plug Domain VA208B3_45770 PF00593 TonB dependent receptor VA208B3_45780 PF00005 ABC transporter VA208B3_45790 PF01497 Periplasmic binding protein VA208B3_45800 PF01032 FecCD transport family VA208B3_45820 PF00691 OmpA family VA208B3_45850 PF00529 HlyD membrane-fusion protein of T1SS VA208B3_45860 PF00005 ABC transporter VA208B3_45860 PF00664 ABC transporter transmembrane region VA208B3_45880 PF00196 Bacterial regulatory proteins, luxR family VA208B3_45890 PF00196 Bacterial regulatory proteins, luxR family VA208B3_45910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_45910 PF02743 Cache domain VA208B3_45910 PF00672 HAMP domain VA208B3_45920 PF17863 AAA lid domain VA208B3_45920 PF07726 ATPase family associated with various cellular activities (AAA) VA208B3_45930 PF01882 Protein of unknown function DUF58 VA208B3_45950 PF13519 von Willebrand factor type A domain VA208B3_46030 PF08447 PAS fold VA208B3_46030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_46030 PF13426 PAS domain VA208B3_46040 PF02743 Cache domain VA208B3_46040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_46040 PF00672 HAMP domain VA208B3_46050 PF00360 Phytochrome region VA208B3_46050 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_46050 PF01590 GAF domain VA208B3_46050 PF00563 EAL domain VA208B3_46130 PF01555 DNA methylase VA208B3_46130 PF18273 Type III R-M EcoP15I C-terminal domain VA208B3_46140 PF04851 Type III restriction enzyme, res subunit VA208B3_46140 PF08774 VRR-NUC domain VA208B3_46450 PF01343 Peptidase family S49 VA208B3_46450 PF06965 Na+/H+ antiporter 1 VA208B3_46530 PF13098 Thioredoxin-like domain VA208B3_46530 PF10411 Disulfide bond isomerase protein N-terminus VA208B3_46880 PF13307 Helicase C-terminal domain VA208B3_46880 PF06733 DEAD_2 VA208B3_46980 PF00145 C-5 cytosine-specific DNA methylase VA208B3_46990 PF13361 UvrD-like helicase C-terminal domain VA208B3_46990 PF00580 UvrD/REP helicase N-terminal domain VA208B3_47070 PF02767 DNA polymerase III beta subunit, central domain VA208B3_47070 PF02768 DNA polymerase III beta subunit, C-terminal domain VA208B3_47070 PF00712 DNA polymerase III beta subunit, N-terminal domain VA208B3_47090 PF01051 Initiator Replication protein VA208B3_47100 PF07715 TonB-dependent Receptor Plug Domain VA208B3_47100 PF00593 TonB dependent receptor VA208B3_47220 PF00795 Carbon-nitrogen hydrolase VA208B3_47370 PF01653 NAD-dependent DNA ligase adenylation domain VA208B3_47370 PF03120 NAD-dependent DNA ligase OB-fold domain VA208B3_47370 PF00533 BRCA1 C Terminus (BRCT) domain VA208B3_47400 PF10502 Signal peptidase, peptidase S26 VA208B3_47560 PF17762 HTH domain found in ParB protein VA208B3_47560 PF02195 ParB-like nuclease domain VA208B3_47770 PF01258 Prokaryotic dksA/traR C4-type zinc finger VA208B3_47780 PF00216 Bacterial DNA-binding protein VA208B3_47840 PF06986 Type-1V conjugative transfer system mating pair stabilisation VA208B3_47850 PF02661 Fic/DOC family VA208B3_47850 PF12728 Helix-turn-helix domain VA208B3_47870 PF00580 UvrD/REP helicase N-terminal domain VA208B3_47870 PF13361 UvrD-like helicase C-terminal domain VA208B3_48020 PF00929 Exonuclease VA208B3_48350 PF00216 Bacterial DNA-binding protein VA208B3_48360 PF01467 Cytidylyltransferase-like VA208B3_48370 PF07517 SecA DEAD-like domain VA208B3_48370 PF01043 SecA preprotein cross-linking domain VA208B3_48370 PF07516 SecA Wing and Scaffold domain VA208B3_48370 PF02810 SEC-C motif VA208B3_48390 PF00004 ATPase family associated with various cellular activities (AAA) VA208B3_48390 PF17862 AAA+ lid domain VA208B3_48390 PF01434 Peptidase family M41 VA208B3_48440 PF00216 Bacterial DNA-binding protein VA208B3_48520 PF01609 Transposase DDE domain VA208B3_48520 PF13006 Insertion element 4 transposase N-terminal VA208B3_48620 PF04264 YceI-like domain VA208B3_48630 PF01292 Prokaryotic cytochrome b561 VA208B3_48660 PF13700 Domain of unknown function (DUF4158) VA208B3_48660 PF01526 Tn3 transposase DDE domain VA208B3_48670 PF13700 Domain of unknown function (DUF4158) VA208B3_48670 PF01526 Tn3 transposase DDE domain VA208B3_48690 PF12729 Four helix bundle sensory module for signal transduction VA208B3_48690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_48690 PF00672 HAMP domain VA208B3_48710 PF00892 EamA-like transporter family VA208B3_48720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VA208B3_48720 PF03466 LysR substrate binding domain VA208B3_48760 PF00156 Phosphoribosyl transferase domain VA208B3_48770 PF14602 Hexapeptide repeat of succinyl-transferase VA208B3_48770 PF12464 Maltose acetyltransferase VA208B3_48790 PF08220 DeoR-like helix-turn-helix domain VA208B3_48790 PF00455 DeoR C terminal sensor domain VA208B3_48800 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_48800 PF00072 Response regulator receiver domain VA208B3_48820 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_48820 PF00563 EAL domain VA208B3_48820 PF03707 Bacterial signalling protein N terminal repeat VA208B3_48830 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_48830 PF00360 Phytochrome region VA208B3_48830 PF00563 EAL domain VA208B3_48830 PF01590 GAF domain VA208B3_48840 PF03707 Bacterial signalling protein N terminal repeat VA208B3_48840 PF00990 Diguanylate cyclase, GGDEF domain VA208B3_48840 PF00563 EAL domain VA208B3_48850 PF00989 PAS fold VA208B3_48860 PF00672 HAMP domain VA208B3_48860 PF12729 Four helix bundle sensory module for signal transduction VA208B3_48860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_48870 PF13276 HTH-like domain VA208B3_48870 PF00665 Integrase core domain VA208B3_48870 PF13333 Integrase core domain VA208B3_48880 PF01527 Transposase VA208B3_48940 PF13276 HTH-like domain VA208B3_48940 PF13333 Integrase core domain VA208B3_48940 PF00665 Integrase core domain VA208B3_48960 PF00672 HAMP domain VA208B3_48960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VA208B3_48970 PF01381 Helix-turn-helix VA208B3_48990 PF02796 Helix-turn-helix domain of resolvase VA208B3_48990 PF00239 Resolvase, N terminal domain VA208B3_49000 PF13438 Domain of unknown function (DUF4113) VA208B3_49000 PF11799 impB/mucB/samB family C-terminal domain VA208B3_49000 PF00817 impB/mucB/samB family VA208B3_49010 PF00717 Peptidase S24-like VA208B3_49020 PF00589 Phage integrase family VA208B3_49050 PF00154 recA bacterial DNA recombination protein VA208B3_49070 PF03738 Glutathionylspermidine synthase preATP-grasp VA208B3_49150 PF02086 D12 class N6 adenine-specific DNA methyltransferase VA208B3_49320 PF00563 EAL domain VA208B3_49320 PF12792 CSS motif domain associated with EAL VA208B3_49360 PF01527 Transposase VA208B3_49370 PF13333 Integrase core domain VA208B3_49370 PF00665 Integrase core domain VA208B3_49370 PF13276 HTH-like domain VA208B3_49430 PF00816 H-NS histone family