locus-tag class description VagYM19_00010 PF11638 DnaA N-terminal domain VagYM19_00010 PF08299 Bacterial dnaA protein helix-turn-helix VagYM19_00010 PF00308 Bacterial dnaA protein VagYM19_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain VagYM19_00020 PF02767 DNA polymerase III beta subunit, central domain VagYM19_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain VagYM19_00030 PF02463 RecF/RecN/SMC N terminal domain VagYM19_00040 PF00986 DNA gyrase B subunit, carboxyl terminus VagYM19_00040 PF00204 DNA gyrase B VagYM19_00040 PF01751 Toprim domain VagYM19_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_00040 PF18053 DNA gyrase B subunit insert domain VagYM19_00070 PF00011 Hsp20/alpha crystallin family VagYM19_00080 PF00155 Aminotransferase class I and II VagYM19_00090 PF00128 Alpha amylase, catalytic domain VagYM19_00100 PF05746 DALR anticodon binding domain VagYM19_00100 PF02092 Glycyl-tRNA synthetase beta subunit VagYM19_00110 PF02091 Glycyl-tRNA synthetase alpha subunit VagYM19_00120 PF01169 Uncharacterized protein family UPF0016 VagYM19_00140 PF01206 Sulfurtransferase TusA VagYM19_00160 PF03466 LysR substrate binding domain VagYM19_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_00170 PF08240 Alcohol dehydrogenase GroES-like domain VagYM19_00170 PF00107 Zinc-binding dehydrogenase VagYM19_00180 PF00108 Thiolase, N-terminal domain VagYM19_00180 PF02803 Thiolase, C-terminal domain VagYM19_00190 PF00378 Enoyl-CoA hydratase/isomerase VagYM19_00190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VagYM19_00190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VagYM19_00200 PF09186 Domain of unknown function (DUF1949) VagYM19_00200 PF01205 Uncharacterized protein family UPF0029 VagYM19_00210 PF02386 Cation transport protein VagYM19_00220 PF12724 Flavodoxin domain VagYM19_00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_00230 PF03466 LysR substrate binding domain VagYM19_00240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VagYM19_00240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VagYM19_00250 PF04380 Membrane fusogenic activity VagYM19_00260 PF00873 AcrB/AcrD/AcrF family VagYM19_00270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_00280 PF00440 Bacterial regulatory proteins, tetR family VagYM19_00280 PF16295 Tetracyclin repressor-like, C-terminal domain VagYM19_00290 PF00580 UvrD/REP helicase N-terminal domain VagYM19_00290 PF13361 UvrD-like helicase C-terminal domain VagYM19_00300 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VagYM19_00320 PF00005 ABC transporter VagYM19_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_00330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_00350 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM19_00350 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_00420 PF00356 Bacterial regulatory proteins, lacI family VagYM19_00420 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VagYM19_00430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_00430 PF03466 LysR substrate binding domain VagYM19_00440 PF00893 Small Multidrug Resistance protein VagYM19_00450 PF00893 Small Multidrug Resistance protein VagYM19_00460 PF00920 Dehydratase family VagYM19_00470 PF01202 Shikimate kinase VagYM19_00480 PF02447 GntP family permease VagYM19_00490 PF01081 KDPG and KHG aldolase VagYM19_00500 PF01048 Phosphorylase superfamily VagYM19_00510 PF03466 LysR substrate binding domain VagYM19_00510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_00520 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_00520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM19_00530 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VagYM19_00540 PF01432 Peptidase family M3 VagYM19_00550 PF01037 Lrp/AsnC ligand binding domain VagYM19_00560 PF00563 EAL domain VagYM19_00560 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_00560 PF08448 PAS fold VagYM19_00570 PF04445 Putative SAM-dependent methyltransferase VagYM19_00590 PF00892 EamA-like transporter family VagYM19_00600 PF00582 Universal stress protein family VagYM19_00610 PF00210 Ferritin-like domain VagYM19_00620 PF10625 Universal stress protein B (UspB) VagYM19_00640 PF00158 Sigma-54 interaction domain VagYM19_00640 PF02954 Bacterial regulatory protein, Fis family VagYM19_00640 PF00072 Response regulator receiver domain VagYM19_00690 PF00781 Diacylglycerol kinase catalytic domain VagYM19_00750 PF01594 AI-2E family transporter VagYM19_00760 PF03707 Bacterial signalling protein N terminal repeat VagYM19_00760 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_00760 PF00563 EAL domain VagYM19_00780 PF02646 RmuC family VagYM19_00790 PF01209 ubiE/COQ5 methyltransferase family VagYM19_00800 PF02036 SCP-2 sterol transfer family VagYM19_00810 PF03109 ABC1 family VagYM19_00820 PF02416 mttA/Hcf106 family VagYM19_00830 PF02416 mttA/Hcf106 family VagYM19_00840 PF00902 Sec-independent protein translocase protein (TatC) VagYM19_00850 PF01026 TatD related DNase VagYM19_00860 PF00490 Delta-aminolevulinic acid dehydratase VagYM19_00870 PF00583 Acetyltransferase (GNAT) family VagYM19_00880 PF01612 3'-5' exonuclease VagYM19_00880 PF00476 DNA polymerase family A VagYM19_00880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VagYM19_00880 PF01367 5'-3' exonuclease, C-terminal SAM fold VagYM19_00890 PF01926 50S ribosome-binding GTPase VagYM19_00900 PF00034 Cytochrome c VagYM19_00920 PF04220 Der GTPase activator (YihI) VagYM19_00930 PF10675 Protein of unknown function (DUF2489) VagYM19_00940 PF04055 Radical SAM superfamily VagYM19_00940 PF06969 HemN C-terminal domain VagYM19_00950 PF00962 Adenosine/AMP deaminase VagYM19_00960 PF03707 Bacterial signalling protein N terminal repeat VagYM19_00960 PF00563 EAL domain VagYM19_00960 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_00970 PF02954 Bacterial regulatory protein, Fis family VagYM19_00970 PF00072 Response regulator receiver domain VagYM19_00970 PF00158 Sigma-54 interaction domain VagYM19_00980 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_00980 PF00989 PAS fold VagYM19_00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_01000 PF00120 Glutamine synthetase, catalytic domain VagYM19_01000 PF03951 Glutamine synthetase, beta-Grasp domain VagYM19_01040 PF03631 Virulence factor BrkB VagYM19_01050 PF02580 D-Tyr-tRNA(Tyr) deacylase VagYM19_01060 PF00583 Acetyltransferase (GNAT) family VagYM19_01060 PF09500 Putative thioesterase (yiiD_Cterm) VagYM19_01080 PF01293 Phosphoenolpyruvate carboxykinase VagYM19_01090 PF01430 Hsp33 protein VagYM19_01100 PF01479 S4 domain VagYM19_01110 PF11356 Type II secretion system protein C VagYM19_01120 PF03958 Bacterial type II/III secretion system short domain VagYM19_01120 PF00263 Bacterial type II and III secretion system protein VagYM19_01130 PF00437 Type II/IV secretion system protein VagYM19_01140 PF00482 Type II secretion system (T2SS), protein F VagYM19_01150 PF07963 Prokaryotic N-terminal methylation motif VagYM19_01150 PF08334 Type II secretion system (T2SS), protein G VagYM19_01160 PF12019 Type II transport protein GspH VagYM19_01170 PF07963 Prokaryotic N-terminal methylation motif VagYM19_01170 PF02501 Type II secretion system (T2SS), protein I VagYM19_01180 PF11612 Type II secretion system (T2SS), protein J VagYM19_01180 PF07963 Prokaryotic N-terminal methylation motif VagYM19_01190 PF03934 Type II secretion system (T2SS), protein K VagYM19_01200 PF12693 GspL periplasmic domain VagYM19_01200 PF05134 Type II secretion system (T2SS), protein L VagYM19_01210 PF04612 Type II secretion system (T2SS), protein M VagYM19_01220 PF01203 Type II secretion system (T2SS), protein N VagYM19_01230 PF00459 Inositol monophosphatase family VagYM19_01240 PF00293 NUDIX domain VagYM19_01250 PF01106 NifU-like domain VagYM19_01250 PF01521 Iron-sulphur cluster biosynthesis VagYM19_01260 PF00156 Phosphoribosyl transferase domain VagYM19_01270 PF00561 alpha/beta hydrolase fold VagYM19_01290 PF09371 Tex-like protein N-terminal domain VagYM19_01290 PF16921 Tex protein YqgF-like domain VagYM19_01290 PF00575 S1 RNA binding domain VagYM19_01290 PF17674 HHH domain VagYM19_01310 PF03449 Transcription elongation factor, N-terminal VagYM19_01310 PF01272 Transcription elongation factor, GreA/GreB, C-term VagYM19_01330 PF00486 Transcriptional regulatory protein, C terminal VagYM19_01330 PF00072 Response regulator receiver domain VagYM19_01340 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_01340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_01340 PF00672 HAMP domain VagYM19_01350 PF00860 Permease family VagYM19_01360 PF17191 RecG wedge domain VagYM19_01360 PF00271 Helicase conserved C-terminal domain VagYM19_01360 PF00270 DEAD/DEAH box helicase VagYM19_01370 PF12105 SpoU, rRNA methylase, C-terminal VagYM19_01370 PF00588 SpoU rRNA Methylase family VagYM19_01380 PF02824 TGS domain VagYM19_01380 PF04607 Region found in RelA / SpoT proteins VagYM19_01380 PF13291 ACT domain VagYM19_01390 PF01192 RNA polymerase Rpb6 VagYM19_01400 PF00625 Guanylate kinase VagYM19_01430 PF02472 Biopolymer transport protein ExbD/TolR VagYM19_01440 PF01618 MotA/TolQ/ExbB proton channel family VagYM19_01470 PF00593 TonB dependent receptor VagYM19_01470 PF07715 TonB-dependent Receptor Plug Domain VagYM19_01480 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_01490 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_01490 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM19_01500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_01510 PF00005 ABC transporter VagYM19_01510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_01520 PF00005 ABC transporter VagYM19_01520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_01540 PF08340 Domain of unknown function (DUF1732) VagYM19_01540 PF03755 YicC-like family, N-terminal region VagYM19_01550 PF03725 3' exoribonuclease family, domain 2 VagYM19_01550 PF01138 3' exoribonuclease family, domain 1 VagYM19_01570 PF03279 Bacterial lipid A biosynthesis acyltransferase VagYM19_01580 PF00440 Bacterial regulatory proteins, tetR family VagYM19_01590 PF02441 Flavoprotein VagYM19_01590 PF04127 DNA / pantothenate metabolism flavoprotein VagYM19_01600 PF17200 Single Cache domain 2 VagYM19_01600 PF00672 HAMP domain VagYM19_01600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_01610 PF04002 RadC-like JAB domain VagYM19_01620 PF00830 Ribosomal L28 family VagYM19_01630 PF00471 Ribosomal protein L33 VagYM19_01650 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VagYM19_01650 PF06827 Zinc finger found in FPG and IleRS VagYM19_01650 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VagYM19_01670 PF05686 Glycosyl transferase family 90 VagYM19_01680 PF01467 Cytidylyltransferase-like VagYM19_01690 PF00535 Glycosyl transferase family 2 VagYM19_01700 PF00535 Glycosyl transferase family 2 VagYM19_01710 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VagYM19_01720 PF01219 Prokaryotic diacylglycerol kinase VagYM19_01740 PF16363 GDP-mannose 4,6 dehydratase VagYM19_01750 PF00483 Nucleotidyl transferase VagYM19_01770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VagYM19_01790 PF02719 Polysaccharide biosynthesis protein VagYM19_01800 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VagYM19_01810 PF02350 UDP-N-acetylglucosamine 2-epimerase VagYM19_01820 PF08666 SAF domain VagYM19_01820 PF03102 NeuB family VagYM19_01840 PF00483 Nucleotidyl transferase VagYM19_01850 PF02348 Cytidylyltransferase VagYM19_01860 PF07922 Glycosyltransferase family 52 VagYM19_01870 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VagYM19_01880 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VagYM19_01890 PF03279 Bacterial lipid A biosynthesis acyltransferase VagYM19_01900 PF01370 NAD dependent epimerase/dehydratase family VagYM19_01910 PF06082 Exopolysaccharide biosynthesis protein YbjH VagYM19_01930 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VagYM19_01960 PF02563 Polysaccharide biosynthesis/export protein VagYM19_01960 PF10531 SLBB domain VagYM19_01960 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VagYM19_02030 PF02719 Polysaccharide biosynthesis protein VagYM19_02030 PF08485 Polysaccharide biosynthesis protein C-terminal VagYM19_02040 PF04321 RmlD substrate binding domain VagYM19_02050 PF02350 UDP-N-acetylglucosamine 2-epimerase VagYM19_02070 PF00953 Glycosyl transferase family 4 VagYM19_02080 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VagYM19_02080 PF00753 Metallo-beta-lactamase superfamily VagYM19_02080 PF10996 Beta-Casp domain VagYM19_02090 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VagYM19_02090 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VagYM19_02090 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VagYM19_02110 PF01370 NAD dependent epimerase/dehydratase family VagYM19_02140 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM19_02170 PF13477 Glycosyl transferase 4-like VagYM19_02170 PF00534 Glycosyl transferases group 1 VagYM19_02180 PF02397 Bacterial sugar transferase VagYM19_02200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VagYM19_02210 PF02719 Polysaccharide biosynthesis protein VagYM19_02230 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VagYM19_02230 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VagYM19_02230 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VagYM19_02240 PF00121 Triosephosphate isomerase VagYM19_02280 PF00455 DeoR C terminal sensor domain VagYM19_02280 PF08220 DeoR-like helix-turn-helix domain VagYM19_02290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VagYM19_02300 PF06005 Cell division protein ZapB VagYM19_02310 PF03737 Aldolase/RraA VagYM19_02320 PF01040 UbiA prenyltransferase family VagYM19_02330 PF07724 AAA domain (Cdc48 subfamily) VagYM19_02330 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_02340 PF00227 Proteasome subunit VagYM19_02370 PF00356 Bacterial regulatory proteins, lacI family VagYM19_02380 PF00270 DEAD/DEAH box helicase VagYM19_02380 PF17764 3′ DNA-binding domain (3′BD) VagYM19_02380 PF00271 Helicase conserved C-terminal domain VagYM19_02380 PF18074 Primosomal protein N C-terminal domain VagYM19_02380 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VagYM19_02390 PF01197 Ribosomal protein L31 VagYM19_02400 PF00338 Ribosomal protein S10p/S20e VagYM19_02410 PF00297 Ribosomal protein L3 VagYM19_02420 PF00573 Ribosomal protein L4/L1 family VagYM19_02430 PF00276 Ribosomal protein L23 VagYM19_02440 PF03947 Ribosomal Proteins L2, C-terminal domain VagYM19_02440 PF00181 Ribosomal Proteins L2, RNA binding domain VagYM19_02450 PF00203 Ribosomal protein S19 VagYM19_02460 PF00237 Ribosomal protein L22p/L17e VagYM19_02470 PF00189 Ribosomal protein S3, C-terminal domain VagYM19_02470 PF07650 KH domain VagYM19_02480 PF00252 Ribosomal protein L16p/L10e VagYM19_02490 PF00831 Ribosomal L29 protein VagYM19_02500 PF00366 Ribosomal protein S17 VagYM19_02510 PF00238 Ribosomal protein L14p/L23e VagYM19_02520 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VagYM19_02520 PF00467 KOW motif VagYM19_02530 PF00281 Ribosomal protein L5 VagYM19_02530 PF00673 ribosomal L5P family C-terminus VagYM19_02540 PF00253 Ribosomal protein S14p/S29e VagYM19_02550 PF00410 Ribosomal protein S8 VagYM19_02560 PF00347 Ribosomal protein L6 VagYM19_02570 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VagYM19_02580 PF00333 Ribosomal protein S5, N-terminal domain VagYM19_02580 PF03719 Ribosomal protein S5, C-terminal domain VagYM19_02590 PF00327 Ribosomal protein L30p/L7e VagYM19_02610 PF00344 SecY translocase VagYM19_02620 PF00444 Ribosomal protein L36 VagYM19_02630 PF00416 Ribosomal protein S13/S18 VagYM19_02640 PF00411 Ribosomal protein S11 VagYM19_02650 PF00163 Ribosomal protein S4/S9 N-terminal domain VagYM19_02650 PF01479 S4 domain VagYM19_02660 PF01000 RNA polymerase Rpb3/RpoA insert domain VagYM19_02660 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VagYM19_02660 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VagYM19_02670 PF01196 Ribosomal protein L17 VagYM19_02690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM19_02690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VagYM19_02710 PF13673 Acetyltransferase (GNAT) domain VagYM19_02720 PF03880 DbpA RNA binding domain VagYM19_02720 PF00271 Helicase conserved C-terminal domain VagYM19_02720 PF00270 DEAD/DEAH box helicase VagYM19_02740 PF02872 5'-nucleotidase, C-terminal domain VagYM19_02740 PF00149 Calcineurin-like phosphoesterase VagYM19_02750 PF10414 Sirohaem synthase dimerisation region VagYM19_02750 PF14824 Sirohaem biosynthesis protein central VagYM19_02750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM19_02760 PF01507 Phosphoadenosine phosphosulfate reductase family VagYM19_02770 PF00009 Elongation factor Tu GTP binding domain VagYM19_02780 PF02080 TrkA-C domain VagYM19_02780 PF03600 Citrate transporter VagYM19_02840 PF00005 ABC transporter VagYM19_02860 PF10795 Protein of unknown function (DUF2607) VagYM19_02870 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VagYM19_02880 PF06526 Protein of unknown function (DUF1107) VagYM19_02890 PF01625 Peptide methionine sulfoxide reductase VagYM19_02900 PF17243 POTRA domain TamA domain 1 VagYM19_02900 PF01103 Surface antigen VagYM19_02910 PF04357 TamB, inner membrane protein subunit of TAM complex VagYM19_02920 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VagYM19_02940 PF00719 Inorganic pyrophosphatase VagYM19_02950 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VagYM19_02960 PF08245 Mur ligase middle domain VagYM19_02960 PF01225 Mur ligase family, catalytic domain VagYM19_02960 PF02875 Mur ligase family, glutamate ligase domain VagYM19_02970 PF02441 Flavoprotein VagYM19_02990 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_03000 PF00005 ABC transporter VagYM19_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_03010 PF03466 LysR substrate binding domain VagYM19_03020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM19_03050 PF16868 NMT1-like family VagYM19_03060 PF01316 Arginine repressor, DNA binding domain VagYM19_03060 PF02863 Arginine repressor, C-terminal domain VagYM19_03070 PF00056 lactate/malate dehydrogenase, NAD binding domain VagYM19_03070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VagYM19_03090 PF00348 Polyprenyl synthetase VagYM19_03100 PF00829 Ribosomal prokaryotic L21 protein VagYM19_03110 PF01016 Ribosomal L27 protein VagYM19_03120 PF01926 50S ribosome-binding GTPase VagYM19_03120 PF01018 GTP1/OBG VagYM19_03130 PF06738 Putative threonine/serine exporter VagYM19_03140 PF12821 Threonine/Serine exporter, ThrE VagYM19_03150 PF00186 Dihydrofolate reductase VagYM19_03160 PF00149 Calcineurin-like phosphoesterase VagYM19_03170 PF04379 ApaG domain VagYM19_03180 PF00398 Ribosomal RNA adenine dimethylase VagYM19_03190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VagYM19_03200 PF09312 SurA N-terminal domain VagYM19_03210 PF04453 LPS transport system D VagYM19_03210 PF03968 OstA-like protein VagYM19_03220 PF00226 DnaJ domain VagYM19_03220 PF05099 Tellurite resistance protein TerB VagYM19_03240 PF00694 Aconitase C-terminal domain VagYM19_03250 PF00330 Aconitase family (aconitate hydratase) VagYM19_03260 PF00180 Isocitrate/isopropylmalate dehydrogenase VagYM19_03270 PF08502 LeuA allosteric (dimerisation) domain VagYM19_03270 PF00682 HMGL-like VagYM19_03290 PF01569 PAP2 superfamily VagYM19_03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_03310 PF03466 LysR substrate binding domain VagYM19_03320 PF00501 AMP-binding enzyme VagYM19_03330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VagYM19_03330 PF00205 Thiamine pyrophosphate enzyme, central domain VagYM19_03330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM19_03340 PF10369 Small subunit of acetolactate synthase VagYM19_03350 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_03350 PF07694 5TMR of 5TMR-LYT VagYM19_03370 PF02887 Pyruvate kinase, alpha/beta domain VagYM19_03370 PF00224 Pyruvate kinase, barrel domain VagYM19_03380 PF08220 DeoR-like helix-turn-helix domain VagYM19_03380 PF00455 DeoR C terminal sensor domain VagYM19_03390 PF01380 SIS domain VagYM19_03410 PF00072 Response regulator receiver domain VagYM19_03410 PF00486 Transcriptional regulatory protein, C terminal VagYM19_03420 PF00672 HAMP domain VagYM19_03420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_03420 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_03430 PF00465 Iron-containing alcohol dehydrogenase VagYM19_03440 PF02733 Dak1 domain VagYM19_03450 PF02734 DAK2 domain VagYM19_03460 PF02896 PEP-utilising enzyme, TIM barrel domain VagYM19_03460 PF05524 PEP-utilising enzyme, N-terminal VagYM19_03460 PF00391 PEP-utilising enzyme, mobile domain VagYM19_03470 PF00158 Sigma-54 interaction domain VagYM19_03470 PF02954 Bacterial regulatory protein, Fis family VagYM19_03470 PF00989 PAS fold VagYM19_03480 PF05068 Mannitol repressor VagYM19_03490 PF01232 Mannitol dehydrogenase Rossmann domain VagYM19_03490 PF08125 Mannitol dehydrogenase C-terminal domain VagYM19_03500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM19_03500 PF02378 Phosphotransferase system, EIIC VagYM19_03500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM19_03560 PF03180 NLPA lipoprotein VagYM19_03570 PF04546 Sigma-70, non-essential region VagYM19_03570 PF04539 Sigma-70 region 3 VagYM19_03570 PF04542 Sigma-70 region 2 VagYM19_03570 PF00140 Sigma-70 factor, region 1.2 VagYM19_03570 PF04545 Sigma-70, region 4 VagYM19_03570 PF03979 Sigma-70 factor, region 1.1 VagYM19_03580 PF01807 CHC2 zinc finger VagYM19_03580 PF08278 DNA primase DnaG DnaB-binding VagYM19_03580 PF10410 DnaB-helicase binding domain of primase VagYM19_03580 PF08275 DNA primase catalytic core, N-terminal domain VagYM19_03590 PF09424 Yqey-like protein VagYM19_03600 PF01165 Ribosomal protein S21 VagYM19_03610 PF00814 Glycoprotease family VagYM19_03620 PF00561 alpha/beta hydrolase fold VagYM19_03630 PF02660 Glycerol-3-phosphate acyltransferase VagYM19_03640 PF02152 Dihydroneopterin aldolase VagYM19_03650 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VagYM19_03660 PF02673 Bacitracin resistance protein BacA VagYM19_03670 PF01966 HD domain VagYM19_03670 PF12627 Probable RNA and SrmB- binding site of polymerase A VagYM19_03670 PF01743 Poly A polymerase head domain VagYM19_03680 PF13401 AAA domain VagYM19_03680 PF01471 Putative peptidoglycan binding domain VagYM19_03710 PF08239 Bacterial SH3 domain VagYM19_03720 PF01384 Phosphate transporter family VagYM19_03730 PF01865 Protein of unknown function DUF47 VagYM19_03740 PF01928 CYTH domain VagYM19_03760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_03760 PF00672 HAMP domain VagYM19_03760 PF02743 Cache domain VagYM19_03770 PF08335 GlnD PII-uridylyltransferase VagYM19_03770 PF03710 Glutamate-ammonia ligase adenylyltransferase VagYM19_03780 PF00294 pfkB family carbohydrate kinase VagYM19_03780 PF01467 Cytidylyltransferase-like VagYM19_03790 PF02321 Outer membrane efflux protein VagYM19_03800 PF00293 NUDIX domain VagYM19_03810 PF06853 Protein of unknown function (DUF1249) VagYM19_03820 PF00149 Calcineurin-like phosphoesterase VagYM19_03830 PF05728 Uncharacterised protein family (UPF0227) VagYM19_03840 PF00986 DNA gyrase B subunit, carboxyl terminus VagYM19_03840 PF01751 Toprim domain VagYM19_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_03840 PF00204 DNA gyrase B VagYM19_03850 PF00521 DNA gyrase/topoisomerase IV, subunit A VagYM19_03850 PF03989 DNA gyrase C-terminal domain, beta-propeller VagYM19_03860 PF13180 PDZ domain VagYM19_03870 PF00595 PDZ domain VagYM19_03880 PF06295 Protein of unknown function (DUF1043) VagYM19_03890 PF03969 AFG1-like ATPase VagYM19_03900 PF00572 Ribosomal protein L13 VagYM19_03910 PF00380 Ribosomal protein S9/S16 VagYM19_03920 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VagYM19_03920 PF00355 Rieske [2Fe-2S] domain VagYM19_03930 PF00033 Cytochrome b/b6/petB VagYM19_03930 PF00032 Cytochrome b(C-terminal)/b6/petD VagYM19_03940 PF02167 Cytochrome C1 family VagYM19_03950 PF00043 Glutathione S-transferase, C-terminal domain VagYM19_03950 PF02798 Glutathione S-transferase, N-terminal domain VagYM19_03960 PF04386 Stringent starvation protein B VagYM19_03970 PF04972 BON domain VagYM19_03980 PF13580 SIS domain VagYM19_03990 PF02021 Uncharacterised protein family UPF0102 VagYM19_04000 PF04348 LppC putative lipoprotein VagYM19_04010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM19_04020 PF01795 MraW methylase family VagYM19_04030 PF04999 Cell division protein FtsL VagYM19_04040 PF00905 Penicillin binding protein transpeptidase domain VagYM19_04040 PF03717 Penicillin-binding Protein dimerisation domain VagYM19_04050 PF01225 Mur ligase family, catalytic domain VagYM19_04050 PF08245 Mur ligase middle domain VagYM19_04050 PF02875 Mur ligase family, glutamate ligase domain VagYM19_04060 PF08245 Mur ligase middle domain VagYM19_04060 PF01225 Mur ligase family, catalytic domain VagYM19_04060 PF02875 Mur ligase family, glutamate ligase domain VagYM19_04070 PF00953 Glycosyl transferase family 4 VagYM19_04070 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VagYM19_04080 PF08245 Mur ligase middle domain VagYM19_04080 PF02875 Mur ligase family, glutamate ligase domain VagYM19_04090 PF01098 Cell cycle protein VagYM19_04100 PF03033 Glycosyltransferase family 28 N-terminal domain VagYM19_04100 PF04101 Glycosyltransferase family 28 C-terminal domain VagYM19_04110 PF08245 Mur ligase middle domain VagYM19_04110 PF02875 Mur ligase family, glutamate ligase domain VagYM19_04110 PF01225 Mur ligase family, catalytic domain VagYM19_04120 PF08478 POTRA domain, FtsQ-type VagYM19_04120 PF03799 Cell division protein FtsQ VagYM19_04130 PF02491 SHS2 domain inserted in FTSA VagYM19_04140 PF12327 FtsZ family, C-terminal domain VagYM19_04140 PF00091 Tubulin/FtsZ family, GTPase domain VagYM19_04150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VagYM19_04170 PF02810 SEC-C motif VagYM19_04170 PF01043 SecA preprotein cross-linking domain VagYM19_04170 PF07516 SecA Wing and Scaffold domain VagYM19_04170 PF07517 SecA DEAD-like domain VagYM19_04180 PF00293 NUDIX domain VagYM19_04190 PF05173 Dihydrodipicolinate reductase, C-terminus VagYM19_04190 PF01113 Dihydrodipicolinate reductase, N-terminus VagYM19_04210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VagYM19_04210 PF00117 Glutamine amidotransferase class-I VagYM19_04220 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VagYM19_04220 PF02142 MGS-like domain VagYM19_04220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VagYM19_04250 PF01925 Sulfite exporter TauE/SafE VagYM19_04260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_04260 PF03466 LysR substrate binding domain VagYM19_04270 PF03458 UPF0126 domain VagYM19_04280 PF01497 Periplasmic binding protein VagYM19_04290 PF03186 CobD/Cbib protein VagYM19_04290 PF17113 Regulatory signalling modulator protein AmpE VagYM19_04300 PF01048 Phosphorylase superfamily VagYM19_04320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VagYM19_04320 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_04330 PF01645 Conserved region in glutamate synthase VagYM19_04330 PF04898 Glutamate synthase central domain VagYM19_04330 PF01493 GXGXG motif VagYM19_04330 PF00310 Glutamine amidotransferases class-II VagYM19_04340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VagYM19_04340 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_04350 PF01493 GXGXG motif VagYM19_04350 PF01645 Conserved region in glutamate synthase VagYM19_04350 PF04898 Glutamate synthase central domain VagYM19_04350 PF00310 Glutamine amidotransferases class-II VagYM19_04360 PF16199 Radical_SAM C-terminal domain VagYM19_04360 PF04055 Radical SAM superfamily VagYM19_04370 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_04370 PF00563 EAL domain VagYM19_04370 PF00360 Phytochrome region VagYM19_04370 PF01590 GAF domain VagYM19_04380 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_04380 PF00989 PAS fold VagYM19_04380 PF00072 Response regulator receiver domain VagYM19_04380 PF18415 Histidine kinase receptor ArcB trans-membrane domain VagYM19_04380 PF01627 Hpt domain VagYM19_04400 PF00072 Response regulator receiver domain VagYM19_04400 PF00486 Transcriptional regulatory protein, C terminal VagYM19_04420 PF03737 Aldolase/RraA VagYM19_04440 PF01842 ACT domain VagYM19_04440 PF13840 ACT domain VagYM19_04440 PF03447 Homoserine dehydrogenase, NAD binding domain VagYM19_04440 PF00742 Homoserine dehydrogenase VagYM19_04440 PF00696 Amino acid kinase family VagYM19_04450 PF00288 GHMP kinases N terminal domain VagYM19_04450 PF08544 GHMP kinases C terminal VagYM19_04460 PF00291 Pyridoxal-phosphate dependent enzyme VagYM19_04460 PF14821 Threonine synthase N terminus VagYM19_04480 PF01228 Glycine radical VagYM19_04490 PF01261 Xylose isomerase-like TIM barrel VagYM19_04500 PF03167 Uracil DNA glycosylase superfamily VagYM19_04530 PF01235 Sodium:alanine symporter family VagYM19_04540 PF03883 Peroxide stress protein YaaA VagYM19_04550 PF00270 DEAD/DEAH box helicase VagYM19_04550 PF00271 Helicase conserved C-terminal domain VagYM19_04560 PF05175 Methyltransferase small domain VagYM19_04570 PF05525 Branched-chain amino acid transport protein VagYM19_04580 PF00258 Flavodoxin VagYM19_04590 PF02899 Phage integrase, N-terminal SAM-like domain VagYM19_04590 PF00589 Phage integrase family VagYM19_04600 PF13098 Thioredoxin-like domain VagYM19_04600 PF10411 Disulfide bond isomerase protein N-terminus VagYM19_04610 PF01368 DHH family VagYM19_04610 PF02272 DHHA1 domain VagYM19_04610 PF17768 RecJ OB domain VagYM19_04620 PF00472 RF-1 domain VagYM19_04620 PF03462 PCRF domain VagYM19_04630 PF01336 OB-fold nucleic acid binding domain VagYM19_04630 PF00152 tRNA synthetases class II (D, K and N) VagYM19_04640 PF00072 Response regulator receiver domain VagYM19_04640 PF02954 Bacterial regulatory protein, Fis family VagYM19_04640 PF00158 Sigma-54 interaction domain VagYM19_04670 PF00248 Aldo/keto reductase family VagYM19_04690 PF02976 DNA mismatch repair enzyme MutH VagYM19_04700 PF00293 NUDIX domain VagYM19_04710 PF02896 PEP-utilising enzyme, TIM barrel domain VagYM19_04710 PF05524 PEP-utilising enzyme, N-terminal VagYM19_04710 PF01590 GAF domain VagYM19_04710 PF00391 PEP-utilising enzyme, mobile domain VagYM19_04720 PF01925 Sulfite exporter TauE/SafE VagYM19_04740 PF00303 Thymidylate synthase VagYM19_04760 PF02690 Na+/Pi-cotransporter VagYM19_04770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_04770 PF03466 LysR substrate binding domain VagYM19_04780 PF01022 Bacterial regulatory protein, arsR family VagYM19_04790 PF01649 Ribosomal protein S20 VagYM19_04800 PF03023 Lipid II flippase MurJ VagYM19_04810 PF01687 Riboflavin kinase VagYM19_04810 PF06574 FAD synthetase VagYM19_04820 PF08264 Anticodon-binding domain of tRNA VagYM19_04820 PF00133 tRNA synthetases class I (I, L, M and V) VagYM19_04820 PF06827 Zinc finger found in FPG and IleRS VagYM19_04830 PF01252 Signal peptidase (SPase) II VagYM19_04840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM19_04850 PF02401 LytB protein VagYM19_04860 PF01527 Transposase VagYM19_04870 PF00665 Integrase core domain VagYM19_04890 PF04397 LytTr DNA-binding domain VagYM19_04890 PF00072 Response regulator receiver domain VagYM19_04900 PF07694 5TMR of 5TMR-LYT VagYM19_04900 PF06580 Histidine kinase VagYM19_04910 PF02554 Carbon starvation protein CstA VagYM19_04940 PF01380 SIS domain VagYM19_04950 PF03702 Anhydro-N-acetylmuramic acid kinase VagYM19_04960 PF00933 Glycosyl hydrolase family 3 N terminal domain VagYM19_04970 PF00793 DAHP synthetase I family VagYM19_04980 PF02153 Prephenate dehydrogenase VagYM19_04980 PF01817 Chorismate mutase type II VagYM19_04990 PF01464 Transglycosylase SLT domain VagYM19_04990 PF10145 Phage-related minor tail protein VagYM19_04990 PF01551 Peptidase family M23 VagYM19_05000 PF07238 PilZ domain VagYM19_05010 PF12848 ABC transporter VagYM19_05010 PF00005 ABC transporter VagYM19_05020 PF14718 Soluble lytic murein transglycosylase L domain VagYM19_05020 PF01464 Transglycosylase SLT domain VagYM19_05030 PF01371 Trp repressor protein VagYM19_05040 PF01931 Protein of unknown function DUF84 VagYM19_05050 PF01817 Chorismate mutase type II VagYM19_05050 PF00800 Prephenate dehydratase VagYM19_05060 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VagYM19_05070 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_05070 PF01464 Transglycosylase SLT domain VagYM19_05080 PF13525 Outer membrane lipoprotein VagYM19_05090 PF00849 RNA pseudouridylate synthase VagYM19_05090 PF01479 S4 domain VagYM19_05110 PF07724 AAA domain (Cdc48 subfamily) VagYM19_05110 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM19_05110 PF02861 Clp amino terminal domain, pathogenicity island component VagYM19_05110 PF17871 AAA lid domain VagYM19_05110 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_05130 PF03411 Penicillin-insensitive murein endopeptidase VagYM19_05150 PF00037 4Fe-4S binding domain VagYM19_05170 PF04381 Putative exonuclease, RdgC VagYM19_05180 PF00072 Response regulator receiver domain VagYM19_05180 PF00486 Transcriptional regulatory protein, C terminal VagYM19_05190 PF00989 PAS fold VagYM19_05190 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_05190 PF11808 Phosphate regulon sensor protein PhoR VagYM19_05200 PF12849 PBP superfamily domain VagYM19_05210 PF02541 Ppx/GppA phosphatase family VagYM19_05220 PF17941 Polyphosphate kinase C-terminal domain 1 VagYM19_05220 PF02503 Polyphosphate kinase middle domain VagYM19_05220 PF13090 Polyphosphate kinase C-terminal domain 2 VagYM19_05220 PF13089 Polyphosphate kinase N-terminal domain VagYM19_05230 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_05240 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_05250 PF00005 ABC transporter VagYM19_05260 PF01895 PhoU domain VagYM19_05270 PF03976 Polyphosphate kinase 2 (PPK2) VagYM19_05280 PF03932 CutC family VagYM19_05290 PF00578 AhpC/TSA family VagYM19_05290 PF10417 C-terminal domain of 1-Cys peroxiredoxin VagYM19_05300 PF03466 LysR substrate binding domain VagYM19_05300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_05310 PF01274 Malate synthase VagYM19_05320 PF00463 Isocitrate lyase family VagYM19_05330 PF00571 CBS domain VagYM19_05350 PF02547 Queuosine biosynthesis protein VagYM19_05360 PF01702 Queuine tRNA-ribosyltransferase VagYM19_05370 PF02699 Preprotein translocase subunit VagYM19_05380 PF07549 SecD/SecF GG Motif VagYM19_05380 PF13721 SecD export protein N-terminal TM region VagYM19_05380 PF02355 Protein export membrane protein VagYM19_05390 PF02355 Protein export membrane protein VagYM19_05390 PF07549 SecD/SecF GG Motif VagYM19_05400 PF00459 Inositol monophosphatase family VagYM19_05410 PF00588 SpoU rRNA Methylase family VagYM19_05420 PF02082 Transcriptional regulator VagYM19_05430 PF00266 Aminotransferase class-V VagYM19_05440 PF01592 NifU-like N terminal domain VagYM19_05450 PF01521 Iron-sulphur cluster biosynthesis VagYM19_05460 PF07743 HSCB C-terminal oligomerisation domain VagYM19_05460 PF00226 DnaJ domain VagYM19_05470 PF00012 Hsp70 protein VagYM19_05480 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM19_05490 PF04384 Iron-sulphur cluster assembly VagYM19_05500 PF00883 Cytosol aminopeptidase family, catalytic domain VagYM19_05500 PF12404 Peptidase VagYM19_05510 PF00334 Nucleoside diphosphate kinase VagYM19_05520 PF04055 Radical SAM superfamily VagYM19_05530 PF13464 Domain of unknown function (DUF4115) VagYM19_05540 PF04551 GcpE protein VagYM19_05550 PF03129 Anticodon binding domain VagYM19_05550 PF13393 Histidyl-tRNA synthetase VagYM19_05560 PF09976 Tetratricopeptide repeat-like domain VagYM19_05570 PF13360 PQQ-like domain VagYM19_05580 PF01926 50S ribosome-binding GTPase VagYM19_05580 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VagYM19_05610 PF02601 Exonuclease VII, large subunit VagYM19_05610 PF13742 OB-fold nucleic acid binding domain VagYM19_05620 PF00478 IMP dehydrogenase / GMP reductase domain VagYM19_05620 PF00571 CBS domain VagYM19_05630 PF02540 NAD synthase VagYM19_05630 PF00958 GMP synthase C terminal domain VagYM19_05630 PF00117 Glutamine amidotransferase class-I VagYM19_05640 PF00589 Phage integrase family VagYM19_05640 PF13356 Arm DNA-binding domain VagYM19_05730 PF03432 Relaxase/Mobilisation nuclease domain VagYM19_05730 PF18821 Large polyvalent protein-associated domain 7 VagYM19_05790 PF02384 N-6 DNA Methylase VagYM19_05810 PF03553 Na+/H+ antiporter family VagYM19_05820 PF06483 Chitinase C VagYM19_05820 PF00704 Glycosyl hydrolases family 18 VagYM19_05830 PF01184 GPR1/FUN34/yaaH family VagYM19_05840 PF01235 Sodium:alanine symporter family VagYM19_05850 PF01266 FAD dependent oxidoreductase VagYM19_05870 PF07969 Amidohydrolase family VagYM19_05880 PF01053 Cys/Met metabolism PLP-dependent enzyme VagYM19_05890 PF00202 Aminotransferase class-III VagYM19_05930 PF00583 Acetyltransferase (GNAT) family VagYM19_05930 PF00795 Carbon-nitrogen hydrolase VagYM19_05940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_05940 PF03466 LysR substrate binding domain VagYM19_05960 PF01668 SmpB protein VagYM19_05970 PF03364 Polyketide cyclase / dehydrase and lipid transport VagYM19_05980 PF03658 RnfH family Ubiquitin VagYM19_05990 PF04355 SmpA / OmlA family VagYM19_06000 PF02463 RecF/RecN/SMC N terminal domain VagYM19_06020 PF01513 ATP-NAD kinase VagYM19_06030 PF01025 GrpE VagYM19_06040 PF00375 Sodium:dicarboxylate symporter family VagYM19_06050 PF00012 Hsp70 protein VagYM19_06060 PF00684 DnaJ central domain VagYM19_06060 PF00226 DnaJ domain VagYM19_06060 PF01556 DnaJ C terminal domain VagYM19_06070 PF07963 Prokaryotic N-terminal methylation motif VagYM19_06070 PF00114 Pilin (bacterial filament) VagYM19_06120 PF03806 AbgT putative transporter family VagYM19_06130 PF14437 MafB19-like deaminase VagYM19_06140 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_06140 PF01464 Transglycosylase SLT domain VagYM19_06150 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VagYM19_06150 PF02769 AIR synthase related protein, C-terminal domain VagYM19_06150 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VagYM19_06180 PF07715 TonB-dependent Receptor Plug Domain VagYM19_06180 PF00593 TonB dependent receptor VagYM19_06210 PF07687 Peptidase dimerisation domain VagYM19_06210 PF01546 Peptidase family M20/M25/M40 VagYM19_06220 PF00860 Permease family VagYM19_06230 PF00156 Phosphoribosyl transferase domain VagYM19_06250 PF07417 Sigma factor-binding transcriptional regulator Crl VagYM19_06260 PF07417 Sigma factor-binding transcriptional regulator Crl VagYM19_06270 PF00696 Amino acid kinase family VagYM19_06270 PF01472 PUA domain VagYM19_06280 PF00171 Aldehyde dehydrogenase family VagYM19_06290 PF03477 ATP cone domain VagYM19_06300 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM19_06300 PF01872 RibD C-terminal domain VagYM19_06310 PF00677 Lumazine binding domain VagYM19_06320 PF00925 GTP cyclohydrolase II VagYM19_06320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VagYM19_06330 PF00885 6,7-dimethyl-8-ribityllumazine synthase VagYM19_06340 PF01029 NusB family VagYM19_06350 PF00586 AIR synthase related protein, N-terminal domain VagYM19_06350 PF02769 AIR synthase related protein, C-terminal domain VagYM19_06360 PF04608 Phosphatidylglycerophosphatase A VagYM19_06370 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VagYM19_06370 PF02779 Transketolase, pyrimidine binding domain VagYM19_06370 PF02780 Transketolase, C-terminal domain VagYM19_06380 PF00348 Polyprenyl synthetase VagYM19_06390 PF02609 Exonuclease VII small subunit VagYM19_06400 PF01618 MotA/TolQ/ExbB proton channel family VagYM19_06410 PF00691 OmpA family VagYM19_06410 PF13677 Membrane MotB of proton-channel complex MotA/MotB VagYM19_06420 PF02926 THUMP domain VagYM19_06420 PF02568 Thiamine biosynthesis protein (ThiI) VagYM19_06440 PF03466 LysR substrate binding domain VagYM19_06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_06460 PF04241 Protein of unknown function (DUF423) VagYM19_06470 PF18125 RlmM ferredoxin-like domain VagYM19_06470 PF01728 FtsJ-like methyltransferase VagYM19_06480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VagYM19_06480 PF01367 5'-3' exonuclease, C-terminal SAM fold VagYM19_06490 PF03641 Possible lysine decarboxylase VagYM19_06490 PF11892 Domain of unknown function (DUF3412) VagYM19_06490 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VagYM19_06500 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_06500 PF00072 Response regulator receiver domain VagYM19_06520 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VagYM19_06520 PF14489 QueF-like protein VagYM19_06530 PF07348 Syd protein (SUKH-2) VagYM19_06540 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VagYM19_06550 PF03180 NLPA lipoprotein VagYM19_06560 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_06570 PF09383 NIL domain VagYM19_06570 PF00005 ABC transporter VagYM19_06590 PF00356 Bacterial regulatory proteins, lacI family VagYM19_06600 PF02378 Phosphotransferase system, EIIC VagYM19_06600 PF00367 phosphotransferase system, EIIB VagYM19_06610 PF00128 Alpha amylase, catalytic domain VagYM19_06610 PF16657 Maltogenic Amylase, C-terminal domain VagYM19_06650 PF00464 Serine hydroxymethyltransferase VagYM19_06660 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VagYM19_06660 PF04055 Radical SAM superfamily VagYM19_06670 PF03099 Biotin/lipoate A/B protein ligase family VagYM19_06680 PF04359 Protein of unknown function (DUF493) VagYM19_06690 PF07943 Penicillin-binding protein 5, C-terminal domain VagYM19_06690 PF00768 D-alanyl-D-alanine carboxypeptidase VagYM19_06700 PF03330 Lytic transglycolase VagYM19_06700 PF05036 Sporulation related domain VagYM19_06710 PF01098 Cell cycle protein VagYM19_06720 PF00905 Penicillin binding protein transpeptidase domain VagYM19_06720 PF03717 Penicillin-binding Protein dimerisation domain VagYM19_06730 PF02590 Predicted SPOUT methyltransferase VagYM19_06750 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VagYM19_06750 PF06144 DNA polymerase III, delta subunit VagYM19_06760 PF04390 Lipopolysaccharide-assembly VagYM19_06770 PF13603 Leucyl-tRNA synthetase, Domain 2 VagYM19_06770 PF00133 tRNA synthetases class I (I, L, M and V) VagYM19_06770 PF08264 Anticodon-binding domain of tRNA VagYM19_06780 PF07295 Zinc-ribbon containing domain VagYM19_06790 PF00795 Carbon-nitrogen hydrolase VagYM19_06800 PF03471 Transporter associated domain VagYM19_06800 PF00571 CBS domain VagYM19_06810 PF02130 Uncharacterized protein family UPF0054 VagYM19_06820 PF02562 PhoH-like protein VagYM19_06830 PF01938 TRAM domain VagYM19_06830 PF00919 Uncharacterized protein family UPF0004 VagYM19_06830 PF04055 Radical SAM superfamily VagYM19_06840 PF01494 FAD binding domain VagYM19_06850 PF06071 Protein of unknown function (DUF933) VagYM19_06850 PF01926 50S ribosome-binding GTPase VagYM19_06860 PF01195 Peptidyl-tRNA hydrolase VagYM19_06870 PF14572 Phosphoribosyl synthetase-associated domain VagYM19_06870 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VagYM19_06880 PF00288 GHMP kinases N terminal domain VagYM19_06880 PF08544 GHMP kinases C terminal VagYM19_06890 PF03550 Outer membrane lipoprotein LolB VagYM19_06900 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VagYM19_06900 PF01488 Shikimate / quinate 5-dehydrogenase VagYM19_06900 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VagYM19_06910 PF03462 PCRF domain VagYM19_06910 PF00472 RF-1 domain VagYM19_06920 PF13847 Methyltransferase domain VagYM19_06920 PF17827 PrmC N-terminal domain VagYM19_06930 PF04247 Invasion gene expression up-regulator, SirB VagYM19_06940 PF13369 Transglutaminase-like superfamily VagYM19_06950 PF00793 DAHP synthetase I family VagYM19_06960 PF00149 Calcineurin-like phosphoesterase VagYM19_06960 PF02872 5'-nucleotidase, C-terminal domain VagYM19_06970 PF04073 Aminoacyl-tRNA editing domain VagYM19_06980 PF01479 S4 domain VagYM19_06980 PF00849 RNA pseudouridylate synthase VagYM19_06990 PF01713 Smr domain VagYM19_07030 PF02838 Glycosyl hydrolase family 20, domain 2 VagYM19_07030 PF00728 Glycosyl hydrolase family 20, catalytic domain VagYM19_07030 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VagYM19_07030 PF03173 Putative carbohydrate binding domain VagYM19_07060 PF00403 Heavy-metal-associated domain VagYM19_07070 PF13609 Gram-negative porin VagYM19_07080 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VagYM19_07090 PF00749 tRNA synthetases class I (E and Q), catalytic domain VagYM19_07100 PF01389 OmpA-like transmembrane domain VagYM19_07100 PF00691 OmpA family VagYM19_07180 PF00072 Response regulator receiver domain VagYM19_07180 PF01584 CheW-like domain VagYM19_07190 PF03705 CheR methyltransferase, all-alpha domain VagYM19_07190 PF01739 CheR methyltransferase, SAM binding domain VagYM19_07200 PF00460 Flagella basal body rod protein VagYM19_07210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_07210 PF00460 Flagella basal body rod protein VagYM19_07220 PF13860 FlgD Ig-like domain VagYM19_07220 PF13861 FlgD Tudor-like domain VagYM19_07220 PF03963 Flagellar hook capping protein - N-terminal region VagYM19_07230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_07230 PF00460 Flagella basal body rod protein VagYM19_07230 PF07559 Flagellar basal body protein FlaE VagYM19_07240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_07240 PF00460 Flagella basal body rod protein VagYM19_07250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_07250 PF00460 Flagella basal body rod protein VagYM19_07260 PF02107 Flagellar L-ring protein VagYM19_07270 PF02119 Flagellar P-ring protein VagYM19_07280 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VagYM19_07280 PF10135 Rod binding protein VagYM19_07290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_07290 PF07196 Flagellin hook IN motif VagYM19_07300 PF00669 Bacterial flagellin N-terminal helical region VagYM19_07320 PF07196 Flagellin hook IN motif VagYM19_07320 PF00700 Bacterial flagellin C-terminal helical region VagYM19_07320 PF00669 Bacterial flagellin N-terminal helical region VagYM19_07330 PF00669 Bacterial flagellin N-terminal helical region VagYM19_07330 PF07196 Flagellin hook IN motif VagYM19_07330 PF00700 Bacterial flagellin C-terminal helical region VagYM19_07340 PF07196 Flagellin hook IN motif VagYM19_07340 PF00669 Bacterial flagellin N-terminal helical region VagYM19_07340 PF00700 Bacterial flagellin C-terminal helical region VagYM19_07350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VagYM19_07360 PF00391 PEP-utilising enzyme, mobile domain VagYM19_07360 PF05524 PEP-utilising enzyme, N-terminal VagYM19_07360 PF02896 PEP-utilising enzyme, TIM barrel domain VagYM19_07380 PF00381 PTS HPr component phosphorylation site VagYM19_07390 PF00291 Pyridoxal-phosphate dependent enzyme VagYM19_07410 PF04354 ZipA, C-terminal FtsZ-binding domain VagYM19_07420 PF01653 NAD-dependent DNA ligase adenylation domain VagYM19_07420 PF00533 BRCA1 C Terminus (BRCT) domain VagYM19_07420 PF12826 Helix-hairpin-helix motif VagYM19_07420 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VagYM19_07420 PF03120 NAD-dependent DNA ligase OB-fold domain VagYM19_07430 PF03573 outer membrane porin, OprD family VagYM19_07470 PF01145 SPFH domain / Band 7 family VagYM19_07470 PF16200 C-terminal region of band_7 VagYM19_07480 PF00085 Thioredoxin VagYM19_07490 PF00106 short chain dehydrogenase VagYM19_07500 PF08338 Domain of unknown function (DUF1731) VagYM19_07500 PF01370 NAD dependent epimerase/dehydratase family VagYM19_07510 PF07556 Protein of unknown function (DUF1538) VagYM19_07520 PF07556 Protein of unknown function (DUF1538) VagYM19_07560 PF12850 Calcineurin-like phosphoesterase superfamily domain VagYM19_07590 PF17323 Trans-membrane regulatory protein ToxS VagYM19_07600 PF00486 Transcriptional regulatory protein, C terminal VagYM19_07610 PF00183 Hsp90 protein VagYM19_07610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_07620 PF05191 Adenylate kinase, active site lid VagYM19_07630 PF00762 Ferrochelatase VagYM19_07650 PF00854 POT family VagYM19_07660 PF02357 Transcription termination factor nusG VagYM19_07670 PF00733 Asparagine synthase VagYM19_07670 PF13537 Glutamine amidotransferase domain VagYM19_07680 PF02254 TrkA-N domain VagYM19_07680 PF00999 Sodium/hydrogen exchanger family VagYM19_07690 PF00480 ROK family VagYM19_07690 PF01047 MarR family VagYM19_07700 PF01979 Amidohydrolase family VagYM19_07710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VagYM19_07710 PF00367 phosphotransferase system, EIIB VagYM19_07710 PF02378 Phosphotransferase system, EIIC VagYM19_07720 PF00749 tRNA synthetases class I (E and Q), catalytic domain VagYM19_07720 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VagYM19_07730 PF01475 Ferric uptake regulator family VagYM19_07750 PF00258 Flavodoxin VagYM19_07770 PF12697 Alpha/beta hydrolase family VagYM19_07780 PF03925 SeqA protein C-terminal domain VagYM19_07780 PF17206 SeqA protein N-terminal domain VagYM19_07790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VagYM19_07790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VagYM19_07790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VagYM19_07790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VagYM19_07810 PF01784 NIF3 (NGG1p interacting factor 3) VagYM19_07820 PF00285 Citrate synthase, C-terminal domain VagYM19_07830 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VagYM19_07840 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VagYM19_07850 PF02910 Fumarate reductase flavoprotein C-term VagYM19_07850 PF00890 FAD binding domain VagYM19_07860 PF13085 2Fe-2S iron-sulfur cluster binding domain VagYM19_07870 PF16078 2-oxoglutarate dehydrogenase N-terminus VagYM19_07870 PF00676 Dehydrogenase E1 component VagYM19_07870 PF16870 2-oxoglutarate dehydrogenase C-terminal VagYM19_07870 PF02779 Transketolase, pyrimidine binding domain VagYM19_07880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VagYM19_07880 PF00364 Biotin-requiring enzyme VagYM19_07880 PF02817 e3 binding domain VagYM19_07890 PF08442 ATP-grasp domain VagYM19_07890 PF00549 CoA-ligase VagYM19_07900 PF00549 CoA-ligase VagYM19_07900 PF02629 CoA binding domain VagYM19_07910 PF00950 ABC 3 transport family VagYM19_07920 PF00005 ABC transporter VagYM19_07930 PF01297 Zinc-uptake complex component A periplasmic VagYM19_07940 PF12833 Helix-turn-helix domain VagYM19_07940 PF02311 AraC-like ligand binding domain VagYM19_07950 PF04023 FeoA domain VagYM19_07960 PF07670 Nucleoside recognition VagYM19_07960 PF02421 Ferrous iron transport protein B VagYM19_07960 PF17910 FeoB cytosolic helical domain VagYM19_07960 PF07664 Ferrous iron transport protein B C terminus VagYM19_07990 PF00750 tRNA synthetases class I (R) VagYM19_07990 PF05746 DALR anticodon binding domain VagYM19_07990 PF03485 Arginyl tRNA synthetase N terminal domain VagYM19_08000 PF06185 YecM protein VagYM19_08020 PF00089 Trypsin VagYM19_08030 PF01842 ACT domain VagYM19_08030 PF00551 Formyl transferase VagYM19_08040 PF13307 Helicase C-terminal domain VagYM19_08040 PF04851 Type III restriction enzyme, res subunit VagYM19_08050 PF00814 Glycoprotease family VagYM19_08070 PF03843 Outer membrane lipoprotein Slp family VagYM19_08080 PF00561 alpha/beta hydrolase fold VagYM19_08090 PF00501 AMP-binding enzyme VagYM19_08090 PF13193 AMP-binding enzyme C-terminal domain VagYM19_08100 PF01612 3'-5' exonuclease VagYM19_08100 PF00570 HRDC domain VagYM19_08110 PF03776 Septum formation topological specificity factor MinE VagYM19_08120 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VagYM19_08130 PF03775 Septum formation inhibitor MinC, C-terminal domain VagYM19_08130 PF05209 Septum formation inhibitor MinC, N-terminal domain VagYM19_08140 PF05166 YcgL domain VagYM19_08150 PF13406 Transglycosylase SLT domain VagYM19_08160 PF03466 LysR substrate binding domain VagYM19_08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_08170 PF01773 Na+ dependent nucleoside transporter N-terminus VagYM19_08170 PF07670 Nucleoside recognition VagYM19_08170 PF07662 Na+ dependent nucleoside transporter C-terminus VagYM19_08180 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VagYM19_08180 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VagYM19_08190 PF01209 ubiE/COQ5 methyltransferase family VagYM19_08200 PF02801 Beta-ketoacyl synthase, C-terminal domain VagYM19_08200 PF00109 Beta-ketoacyl synthase, N-terminal domain VagYM19_08220 PF07977 FabA-like domain VagYM19_08230 PF00109 Beta-ketoacyl synthase, N-terminal domain VagYM19_08230 PF02801 Beta-ketoacyl synthase, C-terminal domain VagYM19_08280 PF00221 Aromatic amino acid lyase VagYM19_08290 PF00535 Glycosyl transferase family 2 VagYM19_08300 PF07977 FabA-like domain VagYM19_08330 PF00550 Phosphopantetheine attachment site VagYM19_08340 PF00550 Phosphopantetheine attachment site VagYM19_08390 PF04820 Tryptophan halogenase VagYM19_08410 PF00571 CBS domain VagYM19_08410 PF03471 Transporter associated domain VagYM19_08410 PF01595 Cyclin M transmembrane N-terminal domain VagYM19_08420 PF00271 Helicase conserved C-terminal domain VagYM19_08420 PF00270 DEAD/DEAH box helicase VagYM19_08430 PF02254 TrkA-N domain VagYM19_08430 PF02080 TrkA-C domain VagYM19_08440 PF02386 Cation transport protein VagYM19_08470 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VagYM19_08480 PF03480 Bacterial extracellular solute-binding protein, family 7 VagYM19_08490 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VagYM19_08500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VagYM19_08510 PF00072 Response regulator receiver domain VagYM19_08510 PF02954 Bacterial regulatory protein, Fis family VagYM19_08510 PF00158 Sigma-54 interaction domain VagYM19_08520 PF02743 Cache domain VagYM19_08520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_08520 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_08530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM19_08530 PF05698 Bacterial trigger factor protein (TF) C-terminus VagYM19_08530 PF05697 Bacterial trigger factor protein (TF) VagYM19_08540 PF00574 Clp protease VagYM19_08550 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM19_08550 PF07724 AAA domain (Cdc48 subfamily) VagYM19_08550 PF06689 ClpX C4-type zinc finger VagYM19_08560 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_08560 PF05362 Lon protease (S16) C-terminal proteolytic domain VagYM19_08560 PF02190 ATP-dependent protease La (LON) substrate-binding domain VagYM19_08570 PF00216 Bacterial DNA-binding protein VagYM19_08580 PF13145 PPIC-type PPIASE domain VagYM19_08620 PF01966 HD domain VagYM19_08620 PF13286 Phosphohydrolase-associated domain VagYM19_08640 PF00155 Aminotransferase class I and II VagYM19_08650 PF00425 chorismate binding enzyme VagYM19_08660 PF16582 Middle domain of thiamine pyrophosphate VagYM19_08660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VagYM19_08660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM19_08670 PF12697 Alpha/beta hydrolase family VagYM19_08680 PF00378 Enoyl-CoA hydratase/isomerase VagYM19_08690 PF13378 Enolase C-terminal domain-like VagYM19_08700 PF00501 AMP-binding enzyme VagYM19_08700 PF13193 AMP-binding enzyme C-terminal domain VagYM19_08720 PF03601 Conserved hypothetical protein 698 VagYM19_08730 PF07690 Major Facilitator Superfamily VagYM19_08760 PF00529 HlyD membrane-fusion protein of T1SS VagYM19_08760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_08770 PF00873 AcrB/AcrD/AcrF family VagYM19_08810 PF00291 Pyridoxal-phosphate dependent enzyme VagYM19_08820 PF13404 AsnC-type helix-turn-helix domain VagYM19_08820 PF01037 Lrp/AsnC ligand binding domain VagYM19_08850 PF09619 Type III secretion system lipoprotein chaperone (YscW) VagYM19_08860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VagYM19_08880 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_08880 PF00072 Response regulator receiver domain VagYM19_08890 PF01527 Transposase VagYM19_08900 PF00665 Integrase core domain VagYM19_08920 PF03466 LysR substrate binding domain VagYM19_08920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_08960 PF00107 Zinc-binding dehydrogenase VagYM19_08960 PF08240 Alcohol dehydrogenase GroES-like domain VagYM19_08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_08990 PF03466 LysR substrate binding domain VagYM19_09000 PF12706 Beta-lactamase superfamily domain VagYM19_09010 PF12852 Cupin VagYM19_09010 PF12833 Helix-turn-helix domain VagYM19_09020 PF00588 SpoU rRNA Methylase family VagYM19_09020 PF08032 RNA 2'-O ribose methyltransferase substrate binding VagYM19_09030 PF00571 CBS domain VagYM19_09030 PF00478 IMP dehydrogenase / GMP reductase domain VagYM19_09040 PF00403 Heavy-metal-associated domain VagYM19_09050 PF01048 Phosphorylase superfamily VagYM19_09070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_09070 PF00672 HAMP domain VagYM19_09080 PF01230 HIT domain VagYM19_09110 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VagYM19_09110 PF13036 Peptidoglycan-synthase activator LpoB VagYM19_09120 PF01636 Phosphotransferase enzyme family VagYM19_09130 PF05728 Uncharacterised protein family (UPF0227) VagYM19_09140 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_09170 PF02559 CarD-like/TRCF domain VagYM19_09170 PF17757 UvrB interaction domain VagYM19_09170 PF03461 TRCF domain VagYM19_09170 PF00271 Helicase conserved C-terminal domain VagYM19_09170 PF00270 DEAD/DEAH box helicase VagYM19_09190 PF02687 FtsX-like permease family VagYM19_09190 PF12704 MacB-like periplasmic core domain VagYM19_09200 PF00005 ABC transporter VagYM19_09210 PF12704 MacB-like periplasmic core domain VagYM19_09210 PF02687 FtsX-like permease family VagYM19_09230 PF00753 Metallo-beta-lactamase superfamily VagYM19_09230 PF13567 Domain of unknown function (DUF4131) VagYM19_09230 PF03772 Competence protein VagYM19_09240 PF00664 ABC transporter transmembrane region VagYM19_09240 PF00005 ABC transporter VagYM19_09250 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VagYM19_09260 PF03966 Trm112p-like protein VagYM19_09270 PF02348 Cytidylyltransferase VagYM19_09280 PF04293 SpoVR like protein VagYM19_09290 PF04285 Protein of unknown function (DUF444) VagYM19_09300 PF06798 PrkA serine protein kinase C-terminal domain VagYM19_09300 PF08298 PrkA AAA domain VagYM19_09310 PF03887 YfbU domain VagYM19_09330 PF04055 Radical SAM superfamily VagYM19_09350 PF02901 Pyruvate formate lyase-like VagYM19_09350 PF01228 Glycine radical VagYM19_09380 PF00005 ABC transporter VagYM19_09390 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_09400 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_09410 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_09430 PF03372 Endonuclease/Exonuclease/phosphatase family VagYM19_09440 PF10689 Protein of unknown function (DUF2496) VagYM19_09450 PF07445 Primosomal replication protein priC VagYM19_09460 PF01925 Sulfite exporter TauE/SafE VagYM19_09470 PF06733 DEAD_2 VagYM19_09470 PF13307 Helicase C-terminal domain VagYM19_09490 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VagYM19_09500 PF00849 RNA pseudouridylate synthase VagYM19_09510 PF03971 Monomeric isocitrate dehydrogenase VagYM19_09520 PF00313 'Cold-shock' DNA-binding domain VagYM19_09530 PF02617 ATP-dependent Clp protease adaptor protein ClpS VagYM19_09540 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM19_09540 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_09540 PF02861 Clp amino terminal domain, pathogenicity island component VagYM19_09540 PF17871 AAA lid domain VagYM19_09540 PF07724 AAA domain (Cdc48 subfamily) VagYM19_09550 PF01176 Translation initiation factor 1A / IF-1 VagYM19_09560 PF04377 Arginine-tRNA-protein transferase, C terminus VagYM19_09560 PF04376 Arginine-tRNA-protein transferase, N terminus VagYM19_09570 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VagYM19_09590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VagYM19_09600 PF10692 Protein of unknown function (DUF2498) VagYM19_09610 PF08272 Topoisomerase I zinc-ribbon-like VagYM19_09610 PF01396 Topoisomerase DNA binding C4 zinc finger VagYM19_09610 PF01131 DNA topoisomerase VagYM19_09610 PF01751 Toprim domain VagYM19_09620 PF00483 Nucleotidyl transferase VagYM19_09630 PF08323 Starch synthase catalytic domain VagYM19_09630 PF00534 Glycosyl transferases group 1 VagYM19_09670 PF04993 TfoX N-terminal domain VagYM19_09670 PF04994 TfoX C-terminal domain VagYM19_09680 PF00356 Bacterial regulatory proteins, lacI family VagYM19_09690 PF02613 Nitrate reductase delta subunit VagYM19_09700 PF00072 Response regulator receiver domain VagYM19_09700 PF00486 Transcriptional regulatory protein, C terminal VagYM19_09710 PF02698 DUF218 domain VagYM19_09720 PF13847 Methyltransferase domain VagYM19_09730 PF03882 MukF winged-helix domain VagYM19_09730 PF17193 MukF C-terminal domain VagYM19_09730 PF17192 MukF middle domain VagYM19_09740 PF04288 MukE-like family VagYM19_09750 PF04310 MukB N-terminal VagYM19_09750 PF16330 MukB hinge domain VagYM19_09790 PF08443 RimK-like ATP-grasp domain VagYM19_09790 PF18030 RimK PreATP-grasp domain VagYM19_09800 PF08003 Protein of unknown function (DUF1698) VagYM19_09810 PF13649 Methyltransferase domain VagYM19_09820 PF01904 Protein of unknown function DUF72 VagYM19_09830 PF01336 OB-fold nucleic acid binding domain VagYM19_09830 PF02938 GAD domain VagYM19_09830 PF00152 tRNA synthetases class II (D, K and N) VagYM19_09840 PF01709 Transcriptional regulator VagYM19_09850 PF02075 Crossover junction endodeoxyribonuclease RuvC VagYM19_09860 PF07499 RuvA, C-terminal domain VagYM19_09860 PF01330 RuvA N terminal domain VagYM19_09870 PF05491 RuvB C-terminal winged helix domain VagYM19_09870 PF05496 Holliday junction DNA helicase RuvB P-loop domain VagYM19_09870 PF17864 RuvB AAA lid domain VagYM19_09880 PF01654 Cytochrome bd terminal oxidase subunit I VagYM19_09890 PF02322 Cytochrome bd terminal oxidase subunit II VagYM19_09900 PF08173 Membrane bound YbgT-like protein VagYM19_09920 PF03061 Thioesterase superfamily VagYM19_09930 PF01618 MotA/TolQ/ExbB proton channel family VagYM19_09940 PF02472 Biopolymer transport protein ExbD/TolR VagYM19_09960 PF04052 TolB amino-terminal domain VagYM19_09960 PF07676 WD40-like Beta Propeller Repeat VagYM19_09970 PF00691 OmpA family VagYM19_09980 PF16331 TolA binding protein trimerisation VagYM19_09980 PF13174 Tetratricopeptide repeat VagYM19_09990 PF02445 Quinolinate synthetase A protein VagYM19_10010 PF03994 Domain of Unknown Function (DUF350) VagYM19_10030 PF03738 Glutathionylspermidine synthase preATP-grasp VagYM19_10050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_10050 PF09308 LuxQ, periplasmic VagYM19_10050 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_10050 PF00072 Response regulator receiver domain VagYM19_10060 PF06610 L-alanine exporter VagYM19_10070 PF00672 HAMP domain VagYM19_10070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_10080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_10080 PF00529 HlyD membrane-fusion protein of T1SS VagYM19_10090 PF00873 AcrB/AcrD/AcrF family VagYM19_10120 PF00579 tRNA synthetases class I (W and Y) VagYM19_10140 PF03372 Endonuclease/Exonuclease/phosphatase family VagYM19_10160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_10160 PF00672 HAMP domain VagYM19_10160 PF12729 Four helix bundle sensory module for signal transduction VagYM19_10170 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VagYM19_10190 PF03466 LysR substrate binding domain VagYM19_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_10210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VagYM19_10210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VagYM19_10220 PF01037 Lrp/AsnC ligand binding domain VagYM19_10230 PF01580 FtsK/SpoIIIE family VagYM19_10230 PF09397 Ftsk gamma domain VagYM19_10230 PF17854 FtsK alpha domain VagYM19_10230 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VagYM19_10240 PF03548 Outer membrane lipoprotein carrier protein LolA VagYM19_10250 PF16193 AAA C-terminal domain VagYM19_10250 PF12002 MgsA AAA+ ATPase C terminal VagYM19_10250 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_10260 PF02403 Seryl-tRNA synthetase N-terminal domain VagYM19_10260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VagYM19_10290 PF00202 Aminotransferase class-III VagYM19_10300 PF04055 Radical SAM superfamily VagYM19_10300 PF06968 Biotin and Thiamin Synthesis associated domain VagYM19_10310 PF00155 Aminotransferase class I and II VagYM19_10320 PF08241 Methyltransferase domain VagYM19_10320 PF12697 Alpha/beta hydrolase family VagYM19_10350 PF01435 Peptidase family M48 VagYM19_10380 PF00106 short chain dehydrogenase VagYM19_10430 PF16036 Chalcone isomerase-like VagYM19_10450 PF00206 Lyase VagYM19_10450 PF08328 Adenylosuccinate lyase C-terminal VagYM19_10460 PF04356 Protein of unknown function (DUF489) VagYM19_10490 PF00294 pfkB family carbohydrate kinase VagYM19_10500 PF00816 H-NS histone family VagYM19_10510 PF03553 Na+/H+ antiporter family VagYM19_10520 PF00158 Sigma-54 interaction domain VagYM19_10520 PF00072 Response regulator receiver domain VagYM19_10520 PF02954 Bacterial regulatory protein, Fis family VagYM19_10530 PF08029 HisG, C-terminal domain VagYM19_10530 PF01634 ATP phosphoribosyltransferase VagYM19_10540 PF00815 Histidinol dehydrogenase VagYM19_10550 PF00155 Aminotransferase class I and II VagYM19_10560 PF08645 Polynucleotide kinase 3 phosphatase VagYM19_10560 PF00475 Imidazoleglycerol-phosphate dehydratase VagYM19_10570 PF00117 Glutamine amidotransferase class-I VagYM19_10580 PF00977 Histidine biosynthesis protein VagYM19_10590 PF00977 Histidine biosynthesis protein VagYM19_10600 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VagYM19_10600 PF01502 Phosphoribosyl-AMP cyclohydrolase VagYM19_10630 PF00529 HlyD membrane-fusion protein of T1SS VagYM19_10630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_10640 PF03466 LysR substrate binding domain VagYM19_10640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_10680 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_10680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_10680 PF00672 HAMP domain VagYM19_10690 PF00072 Response regulator receiver domain VagYM19_10690 PF00486 Transcriptional regulatory protein, C terminal VagYM19_10700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_10700 PF00672 HAMP domain VagYM19_10730 PF08497 Radical SAM N-terminal VagYM19_10730 PF04055 Radical SAM superfamily VagYM19_10730 PF11842 Domain of unknown function (DUF3362) VagYM19_10740 PF08448 PAS fold VagYM19_10740 PF08447 PAS fold VagYM19_10740 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_10740 PF00563 EAL domain VagYM19_10770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_10770 PF03466 LysR substrate binding domain VagYM19_10780 PF08267 Cobalamin-independent synthase, N-terminal domain VagYM19_10780 PF01717 Cobalamin-independent synthase, Catalytic domain VagYM19_10800 PF03795 YCII-related domain VagYM19_10810 PF03061 Thioesterase superfamily VagYM19_10820 PF04279 Intracellular septation protein A VagYM19_10840 PF00072 Response regulator receiver domain VagYM19_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_10850 PF17327 Acyl homoserine lactone synthase VagYM19_10860 PF00375 Sodium:dicarboxylate symporter family VagYM19_10870 PF00501 AMP-binding enzyme VagYM19_10870 PF13193 AMP-binding enzyme C-terminal domain VagYM19_10880 PF13545 Crp-like helix-turn-helix domain VagYM19_10880 PF00027 Cyclic nucleotide-binding domain VagYM19_10890 PF00290 Tryptophan synthase alpha chain VagYM19_10900 PF00291 Pyridoxal-phosphate dependent enzyme VagYM19_10910 PF00218 Indole-3-glycerol phosphate synthase VagYM19_10910 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VagYM19_10920 PF00591 Glycosyl transferase family, a/b domain VagYM19_10920 PF02885 Glycosyl transferase family, helical bundle domain VagYM19_10930 PF00117 Glutamine amidotransferase class-I VagYM19_10940 PF04715 Anthranilate synthase component I, N terminal region VagYM19_10940 PF00425 chorismate binding enzyme VagYM19_10950 PF08056 Tryptophan operon leader peptide VagYM19_10960 PF02811 PHP domain VagYM19_10970 PF01300 Telomere recombination VagYM19_11000 PF01479 S4 domain VagYM19_11000 PF00849 RNA pseudouridylate synthase VagYM19_11010 PF04269 Protein of unknown function, DUF440 VagYM19_11020 PF01132 Elongation factor P (EF-P) OB domain VagYM19_11020 PF09285 Elongation factor P, C-terminal VagYM19_11020 PF08207 Elongation factor P (EF-P) KOW-like domain VagYM19_11040 PF00136 DNA polymerase family B VagYM19_11040 PF03104 DNA polymerase family B, exonuclease domain VagYM19_11050 PF00196 Bacterial regulatory proteins, luxR family VagYM19_11050 PF00072 Response regulator receiver domain VagYM19_11060 PF02151 UvrB/uvrC motif VagYM19_11060 PF08459 UvrC Helix-hairpin-helix N-terminal VagYM19_11060 PF01541 GIY-YIG catalytic domain VagYM19_11070 PF01066 CDP-alcohol phosphatidyltransferase VagYM19_11080 PF00202 Aminotransferase class-III VagYM19_11090 PF03435 Saccharopine dehydrogenase NADP binding domain VagYM19_11090 PF16653 Saccharopine dehydrogenase C-terminal domain VagYM19_11100 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VagYM19_11130 PF00994 Probable molybdopterin binding domain VagYM19_11150 PF00268 Ribonucleotide reductase, small chain VagYM19_11160 PF03477 ATP cone domain VagYM19_11160 PF02867 Ribonucleotide reductase, barrel domain VagYM19_11160 PF00317 Ribonucleotide reductase, all-alpha domain VagYM19_11190 PF03989 DNA gyrase C-terminal domain, beta-propeller VagYM19_11190 PF00521 DNA gyrase/topoisomerase IV, subunit A VagYM19_11220 PF02335 Cytochrome c552 VagYM19_11240 PF13247 4Fe-4S dicluster domain VagYM19_11250 PF03916 Polysulphide reductase, NrfD VagYM19_11260 PF01578 Cytochrome C assembly protein VagYM19_11260 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VagYM19_11270 PF08534 Redoxin VagYM19_11280 PF03918 Cytochrome C biogenesis protein VagYM19_11300 PF00925 GTP cyclohydrolase II VagYM19_11350 PF03734 L,D-transpeptidase catalytic domain VagYM19_11350 PF01471 Putative peptidoglycan binding domain VagYM19_11360 PF05951 Bacterial protein of unknown function (DUF882) VagYM19_11370 PF00753 Metallo-beta-lactamase superfamily VagYM19_11400 PF03480 Bacterial extracellular solute-binding protein, family 7 VagYM19_11420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VagYM19_11430 PF17200 Single Cache domain 2 VagYM19_11430 PF07730 Histidine kinase VagYM19_11440 PF00196 Bacterial regulatory proteins, luxR family VagYM19_11440 PF00072 Response regulator receiver domain VagYM19_11460 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM19_11470 PF00672 HAMP domain VagYM19_11470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_11510 PF00155 Aminotransferase class I and II VagYM19_11540 PF00155 Aminotransferase class I and II VagYM19_11540 PF00392 Bacterial regulatory proteins, gntR family VagYM19_11560 PF00152 tRNA synthetases class II (D, K and N) VagYM19_11560 PF01336 OB-fold nucleic acid binding domain VagYM19_11570 PF17200 Single Cache domain 2 VagYM19_11570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_11570 PF00672 HAMP domain VagYM19_11590 PF01242 6-pyruvoyl tetrahydropterin synthase VagYM19_11610 PF04940 Sensors of blue-light using FAD VagYM19_11610 PF00563 EAL domain VagYM19_11620 PF03315 Serine dehydratase beta chain VagYM19_11620 PF03313 Serine dehydratase alpha chain VagYM19_11630 PF03222 Tryptophan/tyrosine permease family VagYM19_11640 PF00293 NUDIX domain VagYM19_11660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_11660 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_11660 PF00072 Response regulator receiver domain VagYM19_11660 PF09308 LuxQ, periplasmic VagYM19_11670 PF00425 chorismate binding enzyme VagYM19_11670 PF04715 Anthranilate synthase component I, N terminal region VagYM19_11700 PF04317 YcjX-like family, DUF463 VagYM19_11710 PF05128 Domain of unknown function (DUF697) VagYM19_11720 PF00158 Sigma-54 interaction domain VagYM19_11720 PF18024 Helix-turn-helix domain VagYM19_11730 PF13302 Acetyltransferase (GNAT) domain VagYM19_11760 PF00589 Phage integrase family VagYM19_11760 PF13495 Phage integrase, N-terminal SAM-like domain VagYM19_12160 PF00665 Integrase core domain VagYM19_12170 PF01527 Transposase VagYM19_12180 PF01103 Surface antigen VagYM19_12180 PF07244 Surface antigen variable number repeat VagYM19_12180 PF17243 POTRA domain TamA domain 1 VagYM19_12190 PF13091 PLD-like domain VagYM19_12200 PF00135 Carboxylesterase family VagYM19_12250 PF13533 Biotin-lipoyl like VagYM19_12270 PF02080 TrkA-C domain VagYM19_12270 PF06826 Predicted Permease Membrane Region VagYM19_12280 PF00155 Aminotransferase class I and II VagYM19_12290 PF08543 Phosphomethylpyrimidine kinase VagYM19_12320 PF03466 LysR substrate binding domain VagYM19_12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_12380 PF12462 DNA helicase IV / RNA helicase N terminal VagYM19_12380 PF13361 UvrD-like helicase C-terminal domain VagYM19_12380 PF00580 UvrD/REP helicase N-terminal domain VagYM19_12390 PF00665 Integrase core domain VagYM19_12410 PF03981 Ubiquinol-cytochrome C chaperone VagYM19_12410 PF13099 Domain of unknown function (DUF3944) VagYM19_12480 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VagYM19_12490 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VagYM19_12560 PF13533 Biotin-lipoyl like VagYM19_12590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_12620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_12620 PF17203 Single cache domain 3 VagYM19_12620 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VagYM19_12620 PF00989 PAS fold VagYM19_12630 PF00072 Response regulator receiver domain VagYM19_12630 PF12431 Transcriptional regulator VagYM19_12640 PF07715 TonB-dependent Receptor Plug Domain VagYM19_12640 PF00593 TonB dependent receptor VagYM19_12650 PF12833 Helix-turn-helix domain VagYM19_12660 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VagYM19_12660 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VagYM19_12670 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VagYM19_12680 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VagYM19_12680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VagYM19_12710 PF02954 Bacterial regulatory protein, Fis family VagYM19_12710 PF01590 GAF domain VagYM19_12710 PF00158 Sigma-54 interaction domain VagYM19_12720 PF00171 Aldehyde dehydrogenase family VagYM19_12760 PF12833 Helix-turn-helix domain VagYM19_12790 PF00263 Bacterial type II and III secretion system protein VagYM19_12790 PF03958 Bacterial type II/III secretion system short domain VagYM19_12800 PF16697 Inner membrane component of T3SS, cytoplasmic domain VagYM19_12800 PF16693 Inner membrane component of T3SS, periplasmic domain VagYM19_12820 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VagYM19_12830 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VagYM19_12850 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VagYM19_12860 PF01514 Secretory protein of YscJ/FliF family VagYM19_12880 PF02108 Flagellar assembly protein FliH VagYM19_12900 PF02661 Fic/DOC family VagYM19_12980 PF13533 Biotin-lipoyl like VagYM19_13000 PF08360 QacR-like protein, C-terminal region VagYM19_13000 PF00440 Bacterial regulatory proteins, tetR family VagYM19_13010 PF01312 FlhB HrpN YscU SpaS Family VagYM19_13020 PF01311 Bacterial export proteins, family 1 VagYM19_13030 PF01313 Bacterial export proteins, family 3 VagYM19_13040 PF00813 FliP family VagYM19_13050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VagYM19_13080 PF18269 T3SS EscN ATPase C-terminal domain VagYM19_13080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM19_13080 PF02874 ATP synthase alpha/beta family, beta-barrel domain VagYM19_13100 PF09059 TyeA VagYM19_13140 PF00771 FHIPEP family VagYM19_13150 PF09621 Type III secretion system regulator (LcrR) VagYM19_13170 PF04792 V antigen (LcrV) protein VagYM19_13180 PF07720 Tetratricopeptide repeat VagYM19_13200 PF05844 YopD protein VagYM19_13220 PF16868 NMT1-like family VagYM19_13230 PF01925 Sulfite exporter TauE/SafE VagYM19_13250 PF01970 Tripartite tricarboxylate transporter TctA family VagYM19_13310 PF00285 Citrate synthase, C-terminal domain VagYM19_13320 PF00330 Aconitase family (aconitate hydratase) VagYM19_13320 PF00694 Aconitase C-terminal domain VagYM19_13330 PF04303 PrpF protein VagYM19_13340 PF16177 Acetyl-coenzyme A synthetase N-terminus VagYM19_13340 PF00501 AMP-binding enzyme VagYM19_13340 PF13193 AMP-binding enzyme C-terminal domain VagYM19_13360 PF00089 Trypsin VagYM19_13390 PF04055 Radical SAM superfamily VagYM19_13400 PF06508 Queuosine biosynthesis protein QueC VagYM19_13410 PF07694 5TMR of 5TMR-LYT VagYM19_13410 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_13430 PF00691 OmpA family VagYM19_13430 PF05736 OprF membrane domain VagYM19_13460 PF00691 OmpA family VagYM19_13460 PF05736 OprF membrane domain VagYM19_13490 PF10672 S-adenosylmethionine-dependent methyltransferase VagYM19_13490 PF17785 PUA-like domain VagYM19_13500 PF00672 HAMP domain VagYM19_13500 PF02743 Cache domain VagYM19_13500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_13510 PF00708 Acylphosphatase VagYM19_13520 PF04358 DsrC like protein VagYM19_13540 PF01027 Inhibitor of apoptosis-promoting Bax1 VagYM19_13550 PF00005 ABC transporter VagYM19_13560 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_13570 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_13580 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_13590 PF14824 Sirohaem biosynthesis protein central VagYM19_13590 PF10414 Sirohaem synthase dimerisation region VagYM19_13590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM19_13600 PF04461 Protein of unknown function (DUF520) VagYM19_13610 PF00793 DAHP synthetase I family VagYM19_13650 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VagYM19_13650 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VagYM19_13650 PF01189 16S rRNA methyltransferase RsmB/F VagYM19_13660 PF02470 MlaD protein VagYM19_13670 PF04403 Paraquat-inducible protein A VagYM19_13680 PF00005 ABC transporter VagYM19_13680 PF00664 ABC transporter transmembrane region VagYM19_13690 PF13185 GAF domain VagYM19_13700 PF04352 ProQ/FINO family VagYM19_13700 PF17516 ProQ C-terminal domain VagYM19_13710 PF03572 Peptidase family S41 VagYM19_13710 PF17804 Tail specific protease N-terminal domain VagYM19_13710 PF11818 C-terminal domain of tail specific protease (DUF3340) VagYM19_13710 PF00595 PDZ domain VagYM19_13730 PF11940 Domain of unknown function (DUF3458) Ig-like fold VagYM19_13730 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VagYM19_13730 PF01433 Peptidase family M1 domain VagYM19_13750 PF05088 Bacterial NAD-glutamate dehydrogenase VagYM19_13760 PF01180 Dihydroorotate dehydrogenase VagYM19_13770 PF07126 Cell-division protein ZapC VagYM19_13780 PF10672 S-adenosylmethionine-dependent methyltransferase VagYM19_13780 PF02926 THUMP domain VagYM19_13780 PF01170 Putative RNA methylase family UPF0020 VagYM19_13820 PF04957 Ribosome modulation factor VagYM19_13830 PF07977 FabA-like domain VagYM19_13840 PF13654 AAA domain VagYM19_13840 PF05362 Lon protease (S16) C-terminal proteolytic domain VagYM19_13850 PF06303 MatP N-terminal domain VagYM19_13850 PF17414 MatP C-terminal ribbon-helix-helix domain VagYM19_13910 PF05840 Bacteriophage replication gene A protein (GPA) VagYM19_14120 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_14120 PF00072 Response regulator receiver domain VagYM19_14120 PF09308 LuxQ, periplasmic VagYM19_14120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_14150 PF00115 Cytochrome C and Quinol oxidase polypeptide I VagYM19_14180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VagYM19_14180 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VagYM19_14200 PF00403 Heavy-metal-associated domain VagYM19_14230 PF00027 Cyclic nucleotide-binding domain VagYM19_14230 PF13545 Crp-like helix-turn-helix domain VagYM19_14240 PF00582 Universal stress protein family VagYM19_14250 PF01171 PP-loop family VagYM19_14290 PF00005 ABC transporter VagYM19_14290 PF08402 TOBE domain VagYM19_14300 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_14310 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_14320 PF13416 Bacterial extracellular solute-binding protein VagYM19_14330 PF13416 Bacterial extracellular solute-binding protein VagYM19_14340 PF02146 Sir2 family VagYM19_14360 PF00909 Ammonium Transporter Family VagYM19_14410 PF13247 4Fe-4S dicluster domain VagYM19_14420 PF01568 Molydopterin dinucleotide binding domain VagYM19_14420 PF00384 Molybdopterin oxidoreductase VagYM19_14420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM19_14440 PF02613 Nitrate reductase delta subunit VagYM19_14480 PF02634 FdhD/NarQ family VagYM19_14500 PF12848 ABC transporter VagYM19_14500 PF00005 ABC transporter VagYM19_14510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_14510 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_14520 PF00072 Response regulator receiver domain VagYM19_14520 PF02954 Bacterial regulatory protein, Fis family VagYM19_14520 PF00158 Sigma-54 interaction domain VagYM19_14530 PF12849 PBP superfamily domain VagYM19_14540 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_14550 PF08402 TOBE domain VagYM19_14550 PF00005 ABC transporter VagYM19_14560 PF12804 MobA-like NTP transferase domain VagYM19_14570 PF03453 MoeA N-terminal region (domain I and II) VagYM19_14570 PF03454 MoeA C-terminal region (domain IV) VagYM19_14570 PF00994 Probable molybdopterin binding domain VagYM19_14590 PF00480 ROK family VagYM19_14650 PF02743 Cache domain VagYM19_14650 PF00672 HAMP domain VagYM19_14650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_14660 PF00877 NlpC/P60 family VagYM19_14680 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_14680 PF05230 MASE2 domain VagYM19_14690 PF01339 CheB methylesterase VagYM19_14690 PF00072 Response regulator receiver domain VagYM19_14700 PF03881 Fructosamine kinase VagYM19_14720 PF00677 Lumazine binding domain VagYM19_14730 PF01554 MatE VagYM19_14750 PF14743 DNA ligase OB-like domain VagYM19_14750 PF01068 ATP dependent DNA ligase domain VagYM19_14760 PF01740 STAS domain VagYM19_14780 PF10531 SLBB domain VagYM19_14780 PF02563 Polysaccharide biosynthesis/export protein VagYM19_14810 PF02954 Bacterial regulatory protein, Fis family VagYM19_14810 PF00072 Response regulator receiver domain VagYM19_14810 PF00158 Sigma-54 interaction domain VagYM19_14820 PF13439 Glycosyltransferase Family 4 VagYM19_14820 PF00534 Glycosyl transferases group 1 VagYM19_14830 PF00534 Glycosyl transferases group 1 VagYM19_14830 PF13439 Glycosyltransferase Family 4 VagYM19_14890 PF00534 Glycosyl transferases group 1 VagYM19_14890 PF13439 Glycosyltransferase Family 4 VagYM19_14910 PF02397 Bacterial sugar transferase VagYM19_14930 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM19_14960 PF11898 Domain of unknown function (DUF3418) VagYM19_14960 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VagYM19_14960 PF00271 Helicase conserved C-terminal domain VagYM19_14960 PF04408 Helicase associated domain (HA2) VagYM19_14960 PF00270 DEAD/DEAH box helicase VagYM19_14970 PF02525 Flavodoxin-like fold VagYM19_15040 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_15060 PF00012 Hsp70 protein VagYM19_15070 PF00012 Hsp70 protein VagYM19_15110 PF14245 Type IV pilin PilA VagYM19_15110 PF07963 Prokaryotic N-terminal methylation motif VagYM19_15120 PF00664 ABC transporter transmembrane region VagYM19_15120 PF00005 ABC transporter VagYM19_15130 PF00664 ABC transporter transmembrane region VagYM19_15130 PF00005 ABC transporter VagYM19_15150 PF07715 TonB-dependent Receptor Plug Domain VagYM19_15150 PF00593 TonB dependent receptor VagYM19_15160 PF07715 TonB-dependent Receptor Plug Domain VagYM19_15160 PF00593 TonB dependent receptor VagYM19_15170 PF01032 FecCD transport family VagYM19_15180 PF01497 Periplasmic binding protein VagYM19_15190 PF00005 ABC transporter VagYM19_15220 PF03222 Tryptophan/tyrosine permease family VagYM19_15230 PF00465 Iron-containing alcohol dehydrogenase VagYM19_15240 PF01966 HD domain VagYM19_15260 PF03741 Integral membrane protein TerC family VagYM19_15280 PF04055 Radical SAM superfamily VagYM19_15290 PF11230 Protein of unknown function (DUF3029) VagYM19_15300 PF01810 LysE type translocator VagYM19_15310 PF11871 Domain of unknown function (DUF3391) VagYM19_15310 PF01966 HD domain VagYM19_15320 PF00563 EAL domain VagYM19_15320 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_15320 PF03707 Bacterial signalling protein N terminal repeat VagYM19_15330 PF02954 Bacterial regulatory protein, Fis family VagYM19_15330 PF00072 Response regulator receiver domain VagYM19_15330 PF00158 Sigma-54 interaction domain VagYM19_15340 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_15340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_15350 PF00939 Sodium:sulfate symporter transmembrane region VagYM19_15390 PF00072 Response regulator receiver domain VagYM19_15390 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_15400 PF03928 Haem-degrading VagYM19_15410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VagYM19_15410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VagYM19_15450 PF04055 Radical SAM superfamily VagYM19_15450 PF13186 Iron-sulfur cluster-binding domain VagYM19_15460 PF03781 Sulfatase-modifying factor enzyme 1 VagYM19_15490 PF00884 Sulfatase VagYM19_15500 PF00696 Amino acid kinase family VagYM19_15500 PF13840 ACT domain VagYM19_15510 PF06339 Ectoine synthase VagYM19_15520 PF00202 Aminotransferase class-III VagYM19_15530 PF00583 Acetyltransferase (GNAT) family VagYM19_15540 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM19_15570 PF00005 ABC transporter VagYM19_15570 PF00571 CBS domain VagYM19_15580 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_15590 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VagYM19_15610 PF00501 AMP-binding enzyme VagYM19_15650 PF00486 Transcriptional regulatory protein, C terminal VagYM19_15650 PF00072 Response regulator receiver domain VagYM19_15660 PF08521 Two-component sensor kinase N-terminal VagYM19_15660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_15660 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_15670 PF00884 Sulfatase VagYM19_15680 PF00665 Integrase core domain VagYM19_15690 PF01527 Transposase VagYM19_15750 PF01235 Sodium:alanine symporter family VagYM19_15770 PF01810 LysE type translocator VagYM19_15780 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VagYM19_15830 PF13411 MerR HTH family regulatory protein VagYM19_15850 PF03193 RsgA GTPase VagYM19_15880 PF00717 Peptidase S24-like VagYM19_15890 PF11799 impB/mucB/samB family C-terminal domain VagYM19_15890 PF11798 IMS family HHH motif VagYM19_15890 PF13438 Domain of unknown function (DUF4113) VagYM19_15890 PF00817 impB/mucB/samB family VagYM19_15900 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VagYM19_15900 PF01926 50S ribosome-binding GTPase VagYM19_15910 PF01926 50S ribosome-binding GTPase VagYM19_15930 PF01926 50S ribosome-binding GTPase VagYM19_15930 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VagYM19_16000 PF13742 OB-fold nucleic acid binding domain VagYM19_16000 PF02601 Exonuclease VII, large subunit VagYM19_16050 PF00005 ABC transporter VagYM19_16100 PF00271 Helicase conserved C-terminal domain VagYM19_16100 PF12419 SNF2 Helicase protein VagYM19_16100 PF00176 SNF2 family N-terminal domain VagYM19_16120 PF02223 Thymidylate kinase VagYM19_16190 PF00239 Resolvase, N terminal domain VagYM19_16190 PF07508 Recombinase VagYM19_16190 PF13408 Recombinase zinc beta ribbon domain VagYM19_16200 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VagYM19_16210 PF03279 Bacterial lipid A biosynthesis acyltransferase VagYM19_16230 PF13520 Amino acid permease VagYM19_16240 PF00893 Small Multidrug Resistance protein VagYM19_16260 PF04204 Homoserine O-succinyltransferase VagYM19_16290 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_16290 PF03707 Bacterial signalling protein N terminal repeat VagYM19_16290 PF00563 EAL domain VagYM19_16300 PF00072 Response regulator receiver domain VagYM19_16300 PF01627 Hpt domain VagYM19_16300 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_16300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_16300 PF00672 HAMP domain VagYM19_16300 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VagYM19_16330 PF12464 Maltose acetyltransferase VagYM19_16330 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM19_16360 PF04237 YjbR VagYM19_16370 PF01047 MarR family VagYM19_16390 PF12792 CSS motif domain associated with EAL VagYM19_16390 PF00563 EAL domain VagYM19_16440 PF02798 Glutathione S-transferase, N-terminal domain VagYM19_16440 PF14497 Glutathione S-transferase, C-terminal domain VagYM19_16460 PF04209 homogentisate 1,2-dioxygenase VagYM19_16470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM19_16480 PF07687 Peptidase dimerisation domain VagYM19_16480 PF01546 Peptidase family M20/M25/M40 VagYM19_16490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_16500 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_16510 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_16510 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM19_16520 PF00005 ABC transporter VagYM19_16520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_16530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_16530 PF00005 ABC transporter VagYM19_16550 PF08453 Peptidase family M9 N-terminal VagYM19_16550 PF01752 Collagenase VagYM19_16580 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_16590 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_16600 PF08402 TOBE domain VagYM19_16600 PF00005 ABC transporter VagYM19_16610 PF00701 Dihydrodipicolinate synthetase family VagYM19_16620 PF02423 Ornithine cyclodeaminase/mu-crystallin family VagYM19_16640 PF01266 FAD dependent oxidoreductase VagYM19_16640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VagYM19_16650 PF05544 Proline racemase VagYM19_16660 PF00171 Aldehyde dehydrogenase family VagYM19_16670 PF00392 Bacterial regulatory proteins, gntR family VagYM19_16710 PF05971 RNA methyltransferase VagYM19_16720 PF01863 Protein of unknown function DUF45 VagYM19_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_16740 PF03466 LysR substrate binding domain VagYM19_16780 PF00005 ABC transporter VagYM19_16790 PF01032 FecCD transport family VagYM19_16800 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VagYM19_16830 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VagYM19_16840 PF02654 Cobalamin-5-phosphate synthase VagYM19_16850 PF02277 Phosphoribosyltransferase VagYM19_16860 PF13460 NAD(P)H-binding VagYM19_16880 PF08411 Exonuclease C-terminal VagYM19_16880 PF00929 Exonuclease VagYM19_16890 PF03788 LrgA family VagYM19_16900 PF04172 LrgB-like family VagYM19_16910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM19_16910 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM19_16920 PF02222 ATP-grasp domain VagYM19_16930 PF05724 Thiopurine S-methyltransferase (TPMT) VagYM19_16950 PF00216 Bacterial DNA-binding protein VagYM19_16970 PF03484 tRNA synthetase B5 domain VagYM19_16970 PF03147 Ferredoxin-fold anticodon binding domain VagYM19_16970 PF03483 B3/4 domain VagYM19_16970 PF01588 Putative tRNA binding domain VagYM19_16970 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VagYM19_16980 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VagYM19_16980 PF01409 tRNA synthetases class II core domain (F) VagYM19_17040 PF01906 Putative heavy-metal-binding VagYM19_17050 PF00453 Ribosomal protein L20 VagYM19_17060 PF01632 Ribosomal protein L35 VagYM19_17070 PF05198 Translation initiation factor IF-3, N-terminal domain VagYM19_17070 PF00707 Translation initiation factor IF-3, C-terminal domain VagYM19_17080 PF03129 Anticodon binding domain VagYM19_17080 PF02824 TGS domain VagYM19_17080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VagYM19_17080 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VagYM19_17110 PF00392 Bacterial regulatory proteins, gntR family VagYM19_17110 PF07702 UTRA domain VagYM19_17120 PF01979 Amidohydrolase family VagYM19_17130 PF00491 Arginase family VagYM19_17140 PF01175 Urocanase Rossmann-like domain VagYM19_17140 PF17392 Urocanase C-terminal domain VagYM19_17140 PF17391 Urocanase N-terminal domain VagYM19_17150 PF00221 Aromatic amino acid lyase VagYM19_17170 PF04191 Phospholipid methyltransferase VagYM19_17180 PF02913 FAD linked oxidases, C-terminal domain VagYM19_17180 PF01565 FAD binding domain VagYM19_17180 PF13183 4Fe-4S dicluster domain VagYM19_17210 PF00691 OmpA family VagYM19_17210 PF05736 OprF membrane domain VagYM19_17250 PF01259 SAICAR synthetase VagYM19_17260 PF09423 PhoD-like phosphatase VagYM19_17260 PF16655 PhoD-like phosphatase, N-terminal domain VagYM19_17280 PF08482 ATP-dependent helicase C-terminal VagYM19_17280 PF00271 Helicase conserved C-terminal domain VagYM19_17280 PF04408 Helicase associated domain (HA2) VagYM19_17280 PF00270 DEAD/DEAH box helicase VagYM19_17290 PF00390 Malic enzyme, N-terminal domain VagYM19_17290 PF03949 Malic enzyme, NAD binding domain VagYM19_17300 PF02698 DUF218 domain VagYM19_17310 PF00939 Sodium:sulfate symporter transmembrane region VagYM19_17320 PF00939 Sodium:sulfate symporter transmembrane region VagYM19_17340 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_17340 PF00072 Response regulator receiver domain VagYM19_17360 PF00266 Aminotransferase class-V VagYM19_17380 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_17390 PF00664 ABC transporter transmembrane region VagYM19_17390 PF00005 ABC transporter VagYM19_17400 PF00664 ABC transporter transmembrane region VagYM19_17400 PF00005 ABC transporter VagYM19_17420 PF00691 OmpA family VagYM19_17450 PF13953 PapC C-terminal domain VagYM19_17450 PF13954 PapC N-terminal domain VagYM19_17450 PF00577 Outer membrane usher protein VagYM19_17460 PF02753 Pili assembly chaperone PapD, C-terminal domain VagYM19_17460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain VagYM19_17470 PF00419 Fimbrial protein VagYM19_17480 PF00266 Aminotransferase class-V VagYM19_17500 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_17500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_17500 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_17540 PF04993 TfoX N-terminal domain VagYM19_17540 PF04994 TfoX C-terminal domain VagYM19_17560 PF03956 Lysine exporter LysO VagYM19_17580 PF00282 Pyridoxal-dependent decarboxylase conserved domain VagYM19_17590 PF01380 SIS domain VagYM19_17590 PF01418 Helix-turn-helix domain, rpiR family VagYM19_17600 PF00465 Iron-containing alcohol dehydrogenase VagYM19_17610 PF00462 Glutaredoxin VagYM19_17620 PF06826 Predicted Permease Membrane Region VagYM19_17620 PF02080 TrkA-C domain VagYM19_17630 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VagYM19_17630 PF07055 Enoyl reductase FAD binding domain VagYM19_17630 PF12241 Trans-2-enoyl-CoA reductase catalytic region VagYM19_17640 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM19_17640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM19_17640 PF09317 Domain of unknown function (DUF1974) VagYM19_17640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM19_17650 PF00440 Bacterial regulatory proteins, tetR family VagYM19_17650 PF16295 Tetracyclin repressor-like, C-terminal domain VagYM19_17660 PF06965 Na+/H+ antiporter 1 VagYM19_17690 PF00005 ABC transporter VagYM19_17700 PF01554 MatE VagYM19_17710 PF11066 Protein of unknown function (DUF2867) VagYM19_17710 PF13460 NAD(P)H-binding VagYM19_17720 PF03264 NapC/NirT cytochrome c family, N-terminal region VagYM19_17750 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VagYM19_17780 PF07690 Major Facilitator Superfamily VagYM19_17790 PF01479 S4 domain VagYM19_17790 PF00849 RNA pseudouridylate synthase VagYM19_17800 PF00271 Helicase conserved C-terminal domain VagYM19_17800 PF04851 Type III restriction enzyme, res subunit VagYM19_17820 PF00486 Transcriptional regulatory protein, C terminal VagYM19_17820 PF00072 Response regulator receiver domain VagYM19_17830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_17830 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_17830 PF00672 HAMP domain VagYM19_17840 PF01386 Ribosomal L25p family VagYM19_17850 PF00583 Acetyltransferase (GNAT) family VagYM19_17860 PF00149 Calcineurin-like phosphoesterase VagYM19_17860 PF02872 5'-nucleotidase, C-terminal domain VagYM19_17890 PF13416 Bacterial extracellular solute-binding protein VagYM19_17900 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_17910 PF00005 ABC transporter VagYM19_17920 PF01066 CDP-alcohol phosphatidyltransferase VagYM19_17940 PF01590 GAF domain VagYM19_17940 PF00158 Sigma-54 interaction domain VagYM19_17950 PF03063 Prismane/CO dehydrogenase family VagYM19_17960 PF00970 Oxidoreductase FAD-binding domain VagYM19_17960 PF00175 Oxidoreductase NAD-binding domain VagYM19_17960 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM19_17980 PF00849 RNA pseudouridylate synthase VagYM19_17990 PF00209 Sodium:neurotransmitter symporter family VagYM19_18000 PF00209 Sodium:neurotransmitter symporter family VagYM19_18010 PF13091 PLD-like domain VagYM19_18010 PF13396 Phospholipase_D-nuclease N-terminal VagYM19_18020 PF01053 Cys/Met metabolism PLP-dependent enzyme VagYM19_18030 PF00561 alpha/beta hydrolase fold VagYM19_18040 PF03280 Proteobacterial lipase chaperone protein VagYM19_18050 PF03352 Methyladenine glycosylase VagYM19_18060 PF00873 AcrB/AcrD/AcrF family VagYM19_18070 PF13533 Biotin-lipoyl like VagYM19_18090 PF04024 PspC domain VagYM19_18100 PF06667 Phage shock protein B VagYM19_18110 PF04012 PspA/IM30 family VagYM19_18120 PF00158 Sigma-54 interaction domain VagYM19_18120 PF02954 Bacterial regulatory protein, Fis family VagYM19_18130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_18140 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_18150 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM19_18150 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_18160 PF00005 ABC transporter VagYM19_18160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_18170 PF00005 ABC transporter VagYM19_18190 PF01368 DHH family VagYM19_18190 PF02833 DHHA2 domain VagYM19_18210 PF16875 Glycosyl hydrolase family 36 N-terminal domain VagYM19_18210 PF16874 Glycosyl hydrolase family 36 C-terminal domain VagYM19_18220 PF01568 Molydopterin dinucleotide binding domain VagYM19_18220 PF18364 Molybdopterin oxidoreductase N-terminal domain VagYM19_18220 PF00384 Molybdopterin oxidoreductase VagYM19_18230 PF03264 NapC/NirT cytochrome c family, N-terminal region VagYM19_18240 PF06796 Periplasmic nitrate reductase protein NapE VagYM19_18250 PF03649 Uncharacterised protein family (UPF0014) VagYM19_18270 PF01226 Formate/nitrite transporter VagYM19_18320 PF02698 DUF218 domain VagYM19_18330 PF00265 Thymidine kinase VagYM19_18340 PF01406 tRNA synthetases class I (C) catalytic domain VagYM19_18340 PF09190 DALR domain VagYM19_18350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VagYM19_18360 PF00149 Calcineurin-like phosphoesterase VagYM19_18370 PF08668 HDOD domain VagYM19_18370 PF00563 EAL domain VagYM19_18380 PF02810 SEC-C motif VagYM19_18400 PF08267 Cobalamin-independent synthase, N-terminal domain VagYM19_18400 PF01717 Cobalamin-independent synthase, Catalytic domain VagYM19_18440 PF02687 FtsX-like permease family VagYM19_18440 PF00005 ABC transporter VagYM19_18440 PF12704 MacB-like periplasmic core domain VagYM19_18450 PF12704 MacB-like periplasmic core domain VagYM19_18450 PF02687 FtsX-like permease family VagYM19_18450 PF00005 ABC transporter VagYM19_18460 PF02687 FtsX-like permease family VagYM19_18460 PF00005 ABC transporter VagYM19_18460 PF12704 MacB-like periplasmic core domain VagYM19_18480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_18510 PF01938 TRAM domain VagYM19_18510 PF05958 tRNA (Uracil-5-)-methyltransferase VagYM19_18530 PF00085 Thioredoxin VagYM19_18540 PF02683 Cytochrome C biogenesis protein transmembrane region VagYM19_18540 PF11412 Disulphide bond corrector protein DsbC VagYM19_18560 PF00072 Response regulator receiver domain VagYM19_18560 PF00196 Bacterial regulatory proteins, luxR family VagYM19_18570 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_18570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_18580 PF13247 4Fe-4S dicluster domain VagYM19_18590 PF03916 Polysulphide reductase, NrfD VagYM19_18600 PF00384 Molybdopterin oxidoreductase VagYM19_18600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM19_18600 PF01568 Molydopterin dinucleotide binding domain VagYM19_18610 PF00034 Cytochrome c VagYM19_18620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VagYM19_18630 PF04403 Paraquat-inducible protein A VagYM19_18640 PF02470 MlaD protein VagYM19_18670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_18680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VagYM19_18690 PF18073 Rubredoxin metal binding domain VagYM19_18700 PF06305 Lipopolysaccharide assembly protein A domain VagYM19_18710 PF00216 Bacterial DNA-binding protein VagYM19_18720 PF00575 S1 RNA binding domain VagYM19_18730 PF02224 Cytidylate kinase VagYM19_18740 PF01343 Peptidase family S49 VagYM19_18740 PF08496 Peptidase family S49 N-terminal VagYM19_18750 PF00106 short chain dehydrogenase VagYM19_18780 PF14579 Helix-hairpin-helix motif VagYM19_18780 PF02811 PHP domain VagYM19_18780 PF01336 OB-fold nucleic acid binding domain VagYM19_18780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VagYM19_18780 PF07733 Bacterial DNA polymerase III alpha NTPase domain VagYM19_18790 PF00072 Response regulator receiver domain VagYM19_18790 PF01584 CheW-like domain VagYM19_18800 PF00480 ROK family VagYM19_18810 PF00224 Pyruvate kinase, barrel domain VagYM19_18810 PF02887 Pyruvate kinase, alpha/beta domain VagYM19_18820 PF01734 Patatin-like phospholipase VagYM19_18850 PF00209 Sodium:neurotransmitter symporter family VagYM19_18880 PF00367 phosphotransferase system, EIIB VagYM19_18880 PF02378 Phosphotransferase system, EIIC VagYM19_18890 PF01026 TatD related DNase VagYM19_18900 PF09115 DNA polymerase III, delta subunit, C terminal VagYM19_18910 PF02223 Thymidylate kinase VagYM19_18920 PF02618 YceG-like family VagYM19_18930 PF01063 Amino-transferase class IV VagYM19_18940 PF00109 Beta-ketoacyl synthase, N-terminal domain VagYM19_18940 PF02801 Beta-ketoacyl synthase, C-terminal domain VagYM19_18950 PF00550 Phosphopantetheine attachment site VagYM19_18970 PF00698 Acyl transferase domain VagYM19_18980 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VagYM19_18980 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM19_18990 PF02504 Fatty acid synthesis protein VagYM19_19000 PF01783 Ribosomal L32p protein family VagYM19_19010 PF02620 Large ribosomal RNA subunit accumulation protein YceD VagYM19_19020 PF02545 Maf-like protein VagYM19_19030 PF01479 S4 domain VagYM19_19030 PF00849 RNA pseudouridylate synthase VagYM19_19040 PF12111 Polyribonucleotide phosphorylase C terminal VagYM19_19040 PF10150 Ribonuclease E/G family VagYM19_19040 PF00575 S1 RNA binding domain VagYM19_19050 PF00916 Sulfate permease family VagYM19_19050 PF01740 STAS domain VagYM19_19060 PF01451 Low molecular weight phosphotyrosine protein phosphatase VagYM19_19070 PF12557 Cob(I)alamin adenosyltransferase N terminal VagYM19_19070 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VagYM19_19090 PF00485 Phosphoribulokinase / Uridine kinase family VagYM19_19100 PF10609 NUBPL iron-transfer P-loop NTPase VagYM19_19110 PF09334 tRNA synthetases class I (M) VagYM19_19110 PF01588 Putative tRNA binding domain VagYM19_19140 PF00392 Bacterial regulatory proteins, gntR family VagYM19_19140 PF07840 FadR C-terminal domain VagYM19_19150 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VagYM19_19160 PF02600 Disulfide bond formation protein DsbB VagYM19_19170 PF01043 SecA preprotein cross-linking domain VagYM19_19170 PF07516 SecA Wing and Scaffold domain VagYM19_19170 PF02810 SEC-C motif VagYM19_19170 PF07517 SecA DEAD-like domain VagYM19_19180 PF01207 Dihydrouridine synthase (Dus) VagYM19_19190 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_19190 PF17158 Membrane-associated sensor, integral membrane domain VagYM19_19200 PF02903 Alpha amylase, N-terminal ig-like domain VagYM19_19200 PF00128 Alpha amylase, catalytic domain VagYM19_19210 PF00005 ABC transporter VagYM19_19220 PF02653 Branched-chain amino acid transport system / permease component VagYM19_19240 PF04217 Protein of unknown function, DUF412 VagYM19_19250 PF00871 Acetokinase family VagYM19_19260 PF07085 DRTGG domain VagYM19_19260 PF01515 Phosphate acetyl/butaryl transferase VagYM19_19270 PF13194 Domain of unknown function (DUF4010) VagYM19_19290 PF13409 Glutathione S-transferase, N-terminal domain VagYM19_19300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_19300 PF00005 ABC transporter VagYM19_19310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_19310 PF00005 ABC transporter VagYM19_19320 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM19_19320 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_19330 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_19340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_19350 PF02391 MoaE protein VagYM19_19360 PF02597 ThiS family VagYM19_19370 PF01967 MoaC family VagYM19_19380 PF00994 Probable molybdopterin binding domain VagYM19_19390 PF06463 Molybdenum Cofactor Synthesis C VagYM19_19390 PF04055 Radical SAM superfamily VagYM19_19400 PF01933 Uncharacterised protein family UPF0052 VagYM19_19410 PF01627 Hpt domain VagYM19_19420 PF00072 Response regulator receiver domain VagYM19_19420 PF02954 Bacterial regulatory protein, Fis family VagYM19_19420 PF00158 Sigma-54 interaction domain VagYM19_19430 PF00271 Helicase conserved C-terminal domain VagYM19_19430 PF04851 Type III restriction enzyme, res subunit VagYM19_19430 PF02151 UvrB/uvrC motif VagYM19_19430 PF12344 Ultra-violet resistance protein B VagYM19_19430 PF17757 UvrB interaction domain VagYM19_19440 PF02508 Rnf-Nqr subunit, membrane protein VagYM19_19450 PF04060 Putative Fe-S cluster VagYM19_19460 PF10531 SLBB domain VagYM19_19460 PF12838 4Fe-4S dicluster domain VagYM19_19460 PF13375 RnfC Barrel sandwich hybrid domain VagYM19_19460 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VagYM19_19470 PF03116 NQR2, RnfD, RnfE family VagYM19_19480 PF04205 FMN-binding domain VagYM19_19490 PF02508 Rnf-Nqr subunit, membrane protein VagYM19_19500 PF00730 HhH-GPD superfamily base excision DNA repair protein VagYM19_19500 PF10576 Iron-sulfur binding domain of endonuclease III VagYM19_19500 PF00633 Helix-hairpin-helix motif VagYM19_19510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM19_19520 PF10952 Protein of unknown function (DUF2753) VagYM19_19530 PF00691 OmpA family VagYM19_19530 PF18393 MotY N-terminal domain VagYM19_19550 PF00929 Exonuclease VagYM19_19560 PF13726 Na+-H+ antiporter family VagYM19_19560 PF03553 Na+/H+ antiporter family VagYM19_19580 PF00462 Glutaredoxin VagYM19_19590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VagYM19_19590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VagYM19_19620 PF00465 Iron-containing alcohol dehydrogenase VagYM19_19620 PF00171 Aldehyde dehydrogenase family VagYM19_19630 PF01914 MarC family integral membrane protein VagYM19_19640 PF00027 Cyclic nucleotide-binding domain VagYM19_19640 PF00520 Ion transport protein VagYM19_19650 PF02774 Semialdehyde dehydrogenase, dimerisation domain VagYM19_19650 PF01118 Semialdehyde dehydrogenase, NAD binding domain VagYM19_19660 PF03553 Na+/H+ antiporter family VagYM19_19690 PF04245 37-kD nucleoid-associated bacterial protein VagYM19_19700 PF07208 Protein of unknown function (DUF1414) VagYM19_19710 PF00884 Sulfatase VagYM19_19710 PF11893 Domain of unknown function (DUF3413) VagYM19_19720 PF00850 Histone deacetylase domain VagYM19_19730 PF00106 short chain dehydrogenase VagYM19_19750 PF01751 Toprim domain VagYM19_19750 PF01131 DNA topoisomerase VagYM19_19760 PF00881 Nitroreductase family VagYM19_19780 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_19780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM19_19790 PF01343 Peptidase family S49 VagYM19_19800 PF17763 Glutaminase/Asparaginase C-terminal domain VagYM19_19800 PF00710 Asparaginase, N-terminal VagYM19_19810 PF07023 Protein of unknown function (DUF1315) VagYM19_19830 PF01641 SelR domain VagYM19_19840 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VagYM19_19840 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VagYM19_19850 PF01263 Aldose 1-epimerase VagYM19_19860 PF02743 Cache domain VagYM19_19860 PF00672 HAMP domain VagYM19_19860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_19870 PF13847 Methyltransferase domain VagYM19_19900 PF00245 Alkaline phosphatase VagYM19_19920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM19_19930 PF03992 Antibiotic biosynthesis monooxygenase VagYM19_19940 PF05552 Conserved TM helix VagYM19_19940 PF00924 Mechanosensitive ion channel VagYM19_19950 PF03692 Putative zinc- or iron-chelating domain VagYM19_19960 PF04226 Transglycosylase associated protein VagYM19_19970 PF03692 Putative zinc- or iron-chelating domain VagYM19_19990 PF03313 Serine dehydratase alpha chain VagYM19_20000 PF01042 Endoribonuclease L-PSP VagYM19_20020 PF00230 Major intrinsic protein VagYM19_20030 PF02132 RecR protein VagYM19_20030 PF13662 Toprim domain VagYM19_20040 PF02575 YbaB/EbfC DNA-binding family VagYM19_20050 PF12170 DNA polymerase III tau subunit V interacting with alpha VagYM19_20050 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VagYM19_20050 PF12169 DNA polymerase III subunits gamma and tau domain III VagYM19_20060 PF00156 Phosphoribosyl transferase domain VagYM19_20070 PF04304 Protein of unknown function (DUF454) VagYM19_20090 PF00072 Response regulator receiver domain VagYM19_20100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_20100 PF03466 LysR substrate binding domain VagYM19_20110 PF00156 Phosphoribosyl transferase domain VagYM19_20120 PF02674 Colicin V production protein VagYM19_20130 PF05036 Sporulation related domain VagYM19_20140 PF02875 Mur ligase family, glutamate ligase domain VagYM19_20140 PF08245 Mur ligase middle domain VagYM19_20150 PF17848 Acetyl-coA carboxylase zinc finger domain VagYM19_20150 PF01039 Carboxyl transferase domain VagYM19_20160 PF01416 tRNA pseudouridine synthase VagYM19_20180 PF02774 Semialdehyde dehydrogenase, dimerisation domain VagYM19_20180 PF01118 Semialdehyde dehydrogenase, NAD binding domain VagYM19_20190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM19_20190 PF11890 Domain of unknown function (DUF3410) VagYM19_20190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM19_20200 PF00109 Beta-ketoacyl synthase, N-terminal domain VagYM19_20200 PF02801 Beta-ketoacyl synthase, C-terminal domain VagYM19_20210 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VagYM19_20210 PF01266 FAD dependent oxidoreductase VagYM19_20220 PF03358 NADPH-dependent FMN reductase VagYM19_20230 PF08891 YfcL protein VagYM19_20240 PF04315 Elongation factor P hydroxylase VagYM19_20250 PF03458 UPF0126 domain VagYM19_20260 PF01264 Chorismate synthase VagYM19_20270 PF05175 Methyltransferase small domain VagYM19_20280 PF01713 Smr domain VagYM19_20290 PF00300 Histidine phosphatase superfamily (branch 1) VagYM19_20300 PF00675 Insulinase (Peptidase family M16) VagYM19_20300 PF16187 Middle or third domain of peptidase_M16 VagYM19_20300 PF05193 Peptidase M16 inactive domain VagYM19_20320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VagYM19_20320 PF00378 Enoyl-CoA hydratase/isomerase VagYM19_20320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VagYM19_20330 PF00108 Thiolase, N-terminal domain VagYM19_20330 PF02803 Thiolase, C-terminal domain VagYM19_20340 PF04542 Sigma-70 region 2 VagYM19_20340 PF08281 Sigma-70, region 4 VagYM19_20360 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM19_20370 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM19_20380 PF04333 MlaA lipoprotein VagYM19_20390 PF03918 Cytochrome C biogenesis protein VagYM19_20400 PF03918 Cytochrome C biogenesis protein VagYM19_20410 PF08534 Redoxin VagYM19_20420 PF01578 Cytochrome C assembly protein VagYM19_20420 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VagYM19_20430 PF03100 CcmE VagYM19_20440 PF04995 Heme exporter protein D (CcmD) VagYM19_20450 PF01578 Cytochrome C assembly protein VagYM19_20460 PF03379 CcmB protein VagYM19_20470 PF00005 ABC transporter VagYM19_20490 PF01584 CheW-like domain VagYM19_20510 PF13614 AAA domain VagYM19_20520 PF01339 CheB methylesterase VagYM19_20520 PF00072 Response regulator receiver domain VagYM19_20530 PF01584 CheW-like domain VagYM19_20530 PF01627 Hpt domain VagYM19_20530 PF02895 Signal transducing histidine kinase, homodimeric domain VagYM19_20530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_20530 PF00072 Response regulator receiver domain VagYM19_20540 PF04344 Chemotaxis phosphatase, CheZ VagYM19_20550 PF00072 Response regulator receiver domain VagYM19_20560 PF04545 Sigma-70, region 4 VagYM19_20560 PF04539 Sigma-70 region 3 VagYM19_20560 PF04542 Sigma-70 region 2 VagYM19_20570 PF10609 NUBPL iron-transfer P-loop NTPase VagYM19_20580 PF00448 SRP54-type protein, GTPase domain VagYM19_20590 PF00771 FHIPEP family VagYM19_20600 PF00771 FHIPEP family VagYM19_20610 PF01312 FlhB HrpN YscU SpaS Family VagYM19_20620 PF01311 Bacterial export proteins, family 1 VagYM19_20630 PF01313 Bacterial export proteins, family 3 VagYM19_20640 PF00813 FliP family VagYM19_20650 PF04347 Flagellar biosynthesis protein, FliO VagYM19_20660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VagYM19_20670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VagYM19_20670 PF02154 Flagellar motor switch protein FliM VagYM19_20710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM19_20710 PF18269 T3SS EscN ATPase C-terminal domain VagYM19_20730 PF14841 FliG middle domain VagYM19_20730 PF01706 FliG C-terminal domain VagYM19_20730 PF14842 FliG N-terminal domain VagYM19_20740 PF08345 Flagellar M-ring protein C-terminal VagYM19_20740 PF01514 Secretory protein of YscJ/FliF family VagYM19_20750 PF02049 Flagellar hook-basal body complex protein FliE VagYM19_20760 PF00158 Sigma-54 interaction domain VagYM19_20760 PF00072 Response regulator receiver domain VagYM19_20760 PF02954 Bacterial regulatory protein, Fis family VagYM19_20770 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_20770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_20780 PF02954 Bacterial regulatory protein, Fis family VagYM19_20780 PF00158 Sigma-54 interaction domain VagYM19_20780 PF06490 Flagellar regulatory protein FleQ VagYM19_20790 PF02561 Flagellar protein FliS VagYM19_20810 PF07195 Flagellar hook-associated protein 2 C-terminus VagYM19_20810 PF07196 Flagellin hook IN motif VagYM19_20810 PF02465 Flagellar hook-associated protein 2 N-terminus VagYM19_20820 PF03646 FlaG protein VagYM19_20830 PF00700 Bacterial flagellin C-terminal helical region VagYM19_20830 PF00669 Bacterial flagellin N-terminal helical region VagYM19_20830 PF07196 Flagellin hook IN motif VagYM19_20840 PF00700 Bacterial flagellin C-terminal helical region VagYM19_20840 PF07196 Flagellin hook IN motif VagYM19_20840 PF00669 Bacterial flagellin N-terminal helical region VagYM19_20850 PF00700 Bacterial flagellin C-terminal helical region VagYM19_20850 PF00669 Bacterial flagellin N-terminal helical region VagYM19_20850 PF07196 Flagellin hook IN motif VagYM19_20860 PF04261 Dyp-type peroxidase family VagYM19_20870 PF11143 Protein of unknown function (DUF2919) VagYM19_20910 PF03960 ArsC family VagYM19_20920 PF07687 Peptidase dimerisation domain VagYM19_20920 PF01546 Peptidase family M20/M25/M40 VagYM19_20960 PF00701 Dihydrodipicolinate synthetase family VagYM19_20980 PF00578 AhpC/TSA family VagYM19_20990 PF01594 AI-2E family transporter VagYM19_21010 PF01435 Peptidase family M48 VagYM19_21010 PF13181 Tetratricopeptide repeat VagYM19_21020 PF03960 ArsC family VagYM19_21030 PF03358 NADPH-dependent FMN reductase VagYM19_21060 PF00860 Permease family VagYM19_21080 PF02769 AIR synthase related protein, C-terminal domain VagYM19_21080 PF00586 AIR synthase related protein, N-terminal domain VagYM19_21090 PF00551 Formyl transferase VagYM19_21100 PF13230 Glutamine amidotransferases class-II VagYM19_21110 PF13580 SIS domain VagYM19_21120 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM19_21120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM19_21120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM19_21120 PF09317 Domain of unknown function (DUF1974) VagYM19_21130 PF01740 STAS domain VagYM19_21130 PF00916 Sulfate permease family VagYM19_21180 PF00929 Exonuclease VagYM19_21190 PF00075 RNase H VagYM19_21200 PF08241 Methyltransferase domain VagYM19_21210 PF16123 Hydroxyacylglutathione hydrolase C-terminus VagYM19_21210 PF00753 Metallo-beta-lactamase superfamily VagYM19_21220 PF01464 Transglycosylase SLT domain VagYM19_21220 PF01476 LysM domain VagYM19_21240 PF03372 Endonuclease/Exonuclease/phosphatase family VagYM19_21250 PF00543 Nitrogen regulatory protein P-II VagYM19_21260 PF00034 Cytochrome c VagYM19_21270 PF11734 TilS substrate C-terminal domain VagYM19_21270 PF09179 TilS substrate binding domain VagYM19_21270 PF01171 PP-loop family VagYM19_21280 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VagYM19_21290 PF01336 OB-fold nucleic acid binding domain VagYM19_21290 PF07733 Bacterial DNA polymerase III alpha NTPase domain VagYM19_21290 PF14579 Helix-hairpin-helix motif VagYM19_21290 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VagYM19_21290 PF02811 PHP domain VagYM19_21300 PF01351 Ribonuclease HII VagYM19_21310 PF02684 Lipid-A-disaccharide synthetase VagYM19_21320 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VagYM19_21320 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM19_21330 PF07977 FabA-like domain VagYM19_21340 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM19_21340 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VagYM19_21350 PF03938 Outer membrane protein (OmpH-like) VagYM19_21360 PF01103 Surface antigen VagYM19_21360 PF07244 Surface antigen variable number repeat VagYM19_21370 PF17820 PDZ domain VagYM19_21370 PF02163 Peptidase family M50 VagYM19_21380 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VagYM19_21380 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VagYM19_21380 PF13288 DXP reductoisomerase C-terminal domain VagYM19_21400 PF01255 Putative undecaprenyl diphosphate synthase VagYM19_21410 PF01765 Ribosome recycling factor VagYM19_21420 PF00696 Amino acid kinase family VagYM19_21430 PF00889 Elongation factor TS VagYM19_21440 PF00318 Ribosomal protein S2 VagYM19_21450 PF00557 Metallopeptidase family M24 VagYM19_21460 PF01842 ACT domain VagYM19_21460 PF01966 HD domain VagYM19_21460 PF01909 Nucleotidyltransferase domain VagYM19_21460 PF08335 GlnD PII-uridylyltransferase VagYM19_21470 PF11944 Protein of unknown function (DUF3461) VagYM19_21480 PF00849 RNA pseudouridylate synthase VagYM19_21490 PF04287 tRNA pseudouridine synthase C VagYM19_21490 PF00849 RNA pseudouridylate synthase VagYM19_21540 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VagYM19_21550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM19_21550 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VagYM19_21560 PF01370 NAD dependent epimerase/dehydratase family VagYM19_21610 PF03806 AbgT putative transporter family VagYM19_21620 PF01197 Ribosomal protein L31 VagYM19_21630 PF01980 tRNA-methyltransferase O VagYM19_21630 PF18389 TrmO C-terminal domain VagYM19_21640 PF04073 Aminoacyl-tRNA editing domain VagYM19_21640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VagYM19_21640 PF03129 Anticodon binding domain VagYM19_21660 PF06786 Uncharacterised protein family (UPF0253) VagYM19_21680 PF00209 Sodium:neurotransmitter symporter family VagYM19_21690 PF00704 Glycosyl hydrolases family 18 VagYM19_21690 PF02018 Carbohydrate binding domain VagYM19_21690 PF00041 Fibronectin type III domain VagYM19_21710 PF03449 Transcription elongation factor, N-terminal VagYM19_21710 PF01272 Transcription elongation factor, GreA/GreB, C-term VagYM19_21720 PF09382 RQC domain VagYM19_21720 PF00271 Helicase conserved C-terminal domain VagYM19_21720 PF00570 HRDC domain VagYM19_21720 PF00270 DEAD/DEAH box helicase VagYM19_21720 PF16124 RecQ zinc-binding VagYM19_21730 PF11799 impB/mucB/samB family C-terminal domain VagYM19_21730 PF11798 IMS family HHH motif VagYM19_21730 PF00817 impB/mucB/samB family VagYM19_21760 PF02424 ApbE family VagYM19_21770 PF00970 Oxidoreductase FAD-binding domain VagYM19_21770 PF00175 Oxidoreductase NAD-binding domain VagYM19_21770 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM19_21780 PF02508 Rnf-Nqr subunit, membrane protein VagYM19_21790 PF02508 Rnf-Nqr subunit, membrane protein VagYM19_21800 PF04205 FMN-binding domain VagYM19_21810 PF03116 NQR2, RnfD, RnfE family VagYM19_21820 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VagYM19_21820 PF11973 NQRA C-terminal domain VagYM19_21830 PF01722 BolA-like protein VagYM19_21840 PF05175 Methyltransferase small domain VagYM19_21850 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VagYM19_21850 PF03923 Uncharacterized lipoprotein VagYM19_21860 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VagYM19_21870 PF07690 Major Facilitator Superfamily VagYM19_21890 PF04545 Sigma-70, region 4 VagYM19_21890 PF04542 Sigma-70 region 2 VagYM19_21920 PF03502 Nucleoside-specific channel-forming protein, Tsx VagYM19_21930 PF08546 Ketopantoate reductase PanE/ApbA C terminal VagYM19_21930 PF02558 Ketopantoate reductase PanE/ApbA VagYM19_21940 PF01965 DJ-1/PfpI family VagYM19_21950 PF00266 Aminotransferase class-V VagYM19_21960 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_21960 PF17158 Membrane-associated sensor, integral membrane domain VagYM19_21980 PF02657 Fe-S metabolism associated domain VagYM19_21990 PF00899 ThiF family VagYM19_22000 PF03562 MltA specific insert domain VagYM19_22000 PF06725 3D domain VagYM19_22020 PF00696 Amino acid kinase family VagYM19_22020 PF00583 Acetyltransferase (GNAT) family VagYM19_22060 PF13538 UvrD-like helicase C-terminal domain VagYM19_22070 PF13361 UvrD-like helicase C-terminal domain VagYM19_22070 PF00580 UvrD/REP helicase N-terminal domain VagYM19_22070 PF12705 PD-(D/E)XK nuclease superfamily VagYM19_22080 PF17946 RecC C-terminal domain VagYM19_22090 PF00884 Sulfatase VagYM19_22090 PF11893 Domain of unknown function (DUF3413) VagYM19_22110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_22110 PF03466 LysR substrate binding domain VagYM19_22120 PF07130 YebG protein VagYM19_22130 PF14602 Hexapeptide repeat of succinyl-transferase VagYM19_22130 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VagYM19_22140 PF03009 Glycerophosphoryl diester phosphodiesterase family VagYM19_22150 PF07690 Major Facilitator Superfamily VagYM19_22160 PF00230 Major intrinsic protein VagYM19_22170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VagYM19_22170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VagYM19_22180 PF08220 DeoR-like helix-turn-helix domain VagYM19_22180 PF00455 DeoR C terminal sensor domain VagYM19_22190 PF01266 FAD dependent oxidoreductase VagYM19_22190 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VagYM19_22200 PF01544 CorA-like Mg2+ transporter protein VagYM19_22230 PF01588 Putative tRNA binding domain VagYM19_22240 PF00356 Bacterial regulatory proteins, lacI family VagYM19_22270 PF00356 Bacterial regulatory proteins, lacI family VagYM19_22280 PF01263 Aldose 1-epimerase VagYM19_22290 PF00288 GHMP kinases N terminal domain VagYM19_22290 PF10509 Galactokinase galactose-binding signature VagYM19_22290 PF08544 GHMP kinases C terminal VagYM19_22300 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VagYM19_22300 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VagYM19_22310 PF16363 GDP-mannose 4,6 dehydratase VagYM19_22320 PF00356 Bacterial regulatory proteins, lacI family VagYM19_22330 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VagYM19_22330 PF16353 Domain of unknown function(DUF4981) VagYM19_22330 PF02929 Beta galactosidase small chain VagYM19_22330 PF00703 Glycosyl hydrolases family 2 VagYM19_22330 PF02837 Glycosyl hydrolases family 2, sugar binding domain VagYM19_22340 PF04074 YhcH/YjgK/YiaL VagYM19_22350 PF13520 Amino acid permease VagYM19_22360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_22360 PF03466 LysR substrate binding domain VagYM19_22420 PF00437 Type II/IV secretion system protein VagYM19_22480 PF04972 BON domain VagYM19_22480 PF13629 Pilus formation protein N terminal region VagYM19_22480 PF00263 Bacterial type II and III secretion system protein VagYM19_22530 PF02805 Metal binding domain of Ada VagYM19_22530 PF12833 Helix-turn-helix domain VagYM19_22540 PF00501 AMP-binding enzyme VagYM19_22560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_22560 PF03466 LysR substrate binding domain VagYM19_22570 PF03764 Elongation factor G, domain IV VagYM19_22570 PF14492 Elongation Factor G, domain II VagYM19_22570 PF00679 Elongation factor G C-terminus VagYM19_22570 PF00009 Elongation factor Tu GTP binding domain VagYM19_22570 PF03144 Elongation factor Tu domain 2 VagYM19_22580 PF18073 Rubredoxin metal binding domain VagYM19_22600 PF18429 Domain of unknown function (DUF5609) VagYM19_22620 PF01048 Phosphorylase superfamily VagYM19_22630 PF01676 Metalloenzyme superfamily VagYM19_22640 PF02885 Glycosyl transferase family, helical bundle domain VagYM19_22640 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VagYM19_22640 PF00591 Glycosyl transferase family, a/b domain VagYM19_22650 PF01791 DeoC/LacD family aldolase VagYM19_22660 PF07670 Nucleoside recognition VagYM19_22660 PF01773 Na+ dependent nucleoside transporter N-terminus VagYM19_22660 PF07662 Na+ dependent nucleoside transporter C-terminus VagYM19_22670 PF01026 TatD related DNase VagYM19_22690 PF03144 Elongation factor Tu domain 2 VagYM19_22690 PF16658 Class II release factor RF3, C-terminal domain VagYM19_22690 PF00009 Elongation factor Tu GTP binding domain VagYM19_22700 PF00717 Peptidase S24-like VagYM19_22700 PF01381 Helix-turn-helix VagYM19_22790 PF06122 Conjugative relaxosome accessory transposon protein VagYM19_22830 PF00072 Response regulator receiver domain VagYM19_22830 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_22840 PF01116 Fructose-bisphosphate aldolase class-II VagYM19_22880 PF13340 Putative transposase of IS4/5 family (DUF4096) VagYM19_22890 PF01435 Peptidase family M48 VagYM19_22910 PF01556 DnaJ C terminal domain VagYM19_22910 PF00226 DnaJ domain VagYM19_22920 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_22920 PF02861 Clp amino terminal domain, pathogenicity island component VagYM19_22920 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM19_22920 PF17871 AAA lid domain VagYM19_22920 PF07724 AAA domain (Cdc48 subfamily) VagYM19_22950 PF00012 Hsp70 protein VagYM19_22960 PF01025 GrpE VagYM19_22980 PF00999 Sodium/hydrogen exchanger family VagYM19_22980 PF02254 TrkA-N domain VagYM19_22980 PF02080 TrkA-C domain VagYM19_22990 PF00011 Hsp20/alpha crystallin family VagYM19_23000 PF00011 Hsp20/alpha crystallin family VagYM19_23020 PF02954 Bacterial regulatory protein, Fis family VagYM19_23020 PF00158 Sigma-54 interaction domain VagYM19_23020 PF00072 Response regulator receiver domain VagYM19_23120 PF04002 RadC-like JAB domain VagYM19_23130 PF00092 von Willebrand factor type A domain VagYM19_23170 PF07728 AAA domain (dynein-related subfamily) VagYM19_23170 PF08406 CbbQ/NirQ/NorQ C-terminal VagYM19_23210 PF00436 Single-strand binding protein family VagYM19_23240 PF13006 Insertion element 4 transposase N-terminal VagYM19_23240 PF01609 Transposase DDE domain VagYM19_23250 PF13006 Insertion element 4 transposase N-terminal VagYM19_23250 PF01609 Transposase DDE domain VagYM19_23270 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VagYM19_23290 PF01699 Sodium/calcium exchanger protein VagYM19_23300 PF00924 Mechanosensitive ion channel VagYM19_23300 PF05552 Conserved TM helix VagYM19_23310 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM19_23370 PF06986 Type-1V conjugative transfer system mating pair stabilisation VagYM19_23380 PF06834 TraU protein VagYM19_23400 PF10502 Signal peptidase, peptidase S26 VagYM19_23430 PF10411 Disulfide bond isomerase protein N-terminus VagYM19_23430 PF13098 Thioredoxin-like domain VagYM19_23600 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VagYM19_23600 PF12008 Type I restriction and modification enzyme - subunit R C terminal VagYM19_23600 PF18766 SWI2/SNF2 ATPase VagYM19_23620 PF01420 Type I restriction modification DNA specificity domain VagYM19_23630 PF02384 N-6 DNA Methylase VagYM19_23630 PF12161 HsdM N-terminal domain VagYM19_23660 PF00929 Exonuclease VagYM19_23660 PF02811 PHP domain VagYM19_23660 PF14579 Helix-hairpin-helix motif VagYM19_23660 PF07733 Bacterial DNA polymerase III alpha NTPase domain VagYM19_23660 PF11490 DNA polymerase III polC-type N-terminus II VagYM19_23660 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VagYM19_23670 PF00717 Peptidase S24-like VagYM19_23680 PF00817 impB/mucB/samB family VagYM19_23680 PF11799 impB/mucB/samB family C-terminal domain VagYM19_23680 PF13438 Domain of unknown function (DUF4113) VagYM19_23690 PF13438 Domain of unknown function (DUF4113) VagYM19_23690 PF00817 impB/mucB/samB family VagYM19_23690 PF11799 impB/mucB/samB family C-terminal domain VagYM19_23790 PF13508 Acetyltransferase (GNAT) domain VagYM19_23800 PF02036 SCP-2 sterol transfer family VagYM19_23810 PF03707 Bacterial signalling protein N terminal repeat VagYM19_23810 PF00563 EAL domain VagYM19_23810 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_23820 PF01136 Peptidase family U32 VagYM19_23830 PF01136 Peptidase family U32 VagYM19_23840 PF01554 MatE VagYM19_23860 PF07719 Tetratricopeptide repeat VagYM19_23860 PF13181 Tetratricopeptide repeat VagYM19_23870 PF00575 S1 RNA binding domain VagYM19_23870 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VagYM19_23870 PF03725 3' exoribonuclease family, domain 2 VagYM19_23870 PF01138 3' exoribonuclease family, domain 1 VagYM19_23870 PF00013 KH domain VagYM19_23880 PF00312 Ribosomal protein S15 VagYM19_23890 PF09157 Pseudouridine synthase II TruB, C-terminal VagYM19_23890 PF01509 TruB family pseudouridylate synthase (N terminal domain) VagYM19_23890 PF16198 tRNA pseudouridylate synthase B C-terminal domain VagYM19_23900 PF02033 Ribosome-binding factor A VagYM19_23910 PF04760 Translation initiation factor IF-2, N-terminal region VagYM19_23910 PF00009 Elongation factor Tu GTP binding domain VagYM19_23910 PF08364 Bacterial translation initiation factor IF-2 associated region VagYM19_23910 PF11987 Translation-initiation factor 2 VagYM19_23920 PF13184 NusA-like KH domain VagYM19_23920 PF08529 NusA N-terminal domain VagYM19_23920 PF00575 S1 RNA binding domain VagYM19_23930 PF17384 RimP C-terminal SH3 domain VagYM19_23930 PF02576 RimP N-terminal domain VagYM19_23940 PF03840 Preprotein translocase SecG subunit VagYM19_23950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VagYM19_23950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VagYM19_23950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VagYM19_23950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VagYM19_23960 PF00809 Pterin binding enzyme VagYM19_23970 PF17862 AAA+ lid domain VagYM19_23970 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_23970 PF06480 FtsH Extracellular VagYM19_23970 PF01434 Peptidase family M41 VagYM19_23980 PF01728 FtsJ-like methyltransferase VagYM19_23990 PF01985 CRS1 / YhbY (CRM) domain VagYM19_24000 PF01272 Transcription elongation factor, GreA/GreB, C-term VagYM19_24000 PF03449 Transcription elongation factor, N-terminal VagYM19_24010 PF13609 Gram-negative porin VagYM19_24020 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VagYM19_24040 PF00579 tRNA synthetases class I (W and Y) VagYM19_24050 PF01476 LysM domain VagYM19_24050 PF01551 Peptidase family M23 VagYM19_24050 PF08525 Opacity-associated protein A N-terminal motif VagYM19_24060 PF00873 AcrB/AcrD/AcrF family VagYM19_24080 PF01521 Iron-sulphur cluster biosynthesis VagYM19_24090 PF00202 Aminotransferase class-III VagYM19_24100 PF01594 AI-2E family transporter VagYM19_24110 PF08468 Methyltransferase small domain N-terminal VagYM19_24110 PF05175 Methyltransferase small domain VagYM19_24120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_24120 PF09308 LuxQ, periplasmic VagYM19_24120 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_24120 PF00072 Response regulator receiver domain VagYM19_24130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_24140 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_24160 PF00005 ABC transporter VagYM19_24160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_24170 PF00005 ABC transporter VagYM19_24170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_24190 PF01869 BadF/BadG/BcrA/BcrD ATPase family VagYM19_24200 PF02838 Glycosyl hydrolase family 20, domain 2 VagYM19_24200 PF00728 Glycosyl hydrolase family 20, catalytic domain VagYM19_24210 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VagYM19_24210 PF06165 Glycosyltransferase family 36 VagYM19_24220 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VagYM19_24220 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VagYM19_24220 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VagYM19_24220 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VagYM19_24230 PF08402 TOBE domain VagYM19_24230 PF00005 ABC transporter VagYM19_24250 PF13416 Bacterial extracellular solute-binding protein VagYM19_24260 PF00909 Ammonium Transporter Family VagYM19_24270 PF00543 Nitrogen regulatory protein P-II VagYM19_24280 PF06062 Uncharacterised protein family (UPF0231) VagYM19_24290 PF11791 Aconitate B N-terminal domain VagYM19_24290 PF06434 Aconitate hydratase 2 N-terminus VagYM19_24290 PF00330 Aconitase family (aconitate hydratase) VagYM19_24300 PF01734 Patatin-like phospholipase VagYM19_24310 PF14814 Bifunctional transglycosylase second domain VagYM19_24310 PF00905 Penicillin binding protein transpeptidase domain VagYM19_24310 PF00912 Transglycosylase VagYM19_24320 PF04408 Helicase associated domain (HA2) VagYM19_24320 PF08482 ATP-dependent helicase C-terminal VagYM19_24320 PF00271 Helicase conserved C-terminal domain VagYM19_24320 PF00270 DEAD/DEAH box helicase VagYM19_24330 PF03749 Sugar fermentation stimulation protein RE domain VagYM19_24330 PF17746 SfsA N-terminal OB domain VagYM19_24340 PF01258 Prokaryotic dksA/traR C4-type zinc finger VagYM19_24350 PF00749 tRNA synthetases class I (E and Q), catalytic domain VagYM19_24360 PF01743 Poly A polymerase head domain VagYM19_24360 PF12627 Probable RNA and SrmB- binding site of polymerase A VagYM19_24360 PF12626 Polymerase A arginine-rich C-terminus VagYM19_24370 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VagYM19_24380 PF02548 Ketopantoate hydroxymethyltransferase VagYM19_24390 PF02569 Pantoate-beta-alanine ligase VagYM19_24400 PF03279 Bacterial lipid A biosynthesis acyltransferase VagYM19_24410 PF01061 ABC-2 type transporter VagYM19_24420 PF00005 ABC transporter VagYM19_24430 PF01740 STAS domain VagYM19_24430 PF00916 Sulfate permease family VagYM19_24440 PF00484 Carbonic anhydrase VagYM19_24450 PF00156 Phosphoribosyl transferase domain VagYM19_24460 PF00440 Bacterial regulatory proteins, tetR family VagYM19_24470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM19_24470 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_24480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VagYM19_24480 PF00364 Biotin-requiring enzyme VagYM19_24480 PF02817 e3 binding domain VagYM19_24490 PF00456 Transketolase, thiamine diphosphate binding domain VagYM19_24490 PF17831 Pyruvate dehydrogenase E1 component middle domain VagYM19_24500 PF00392 Bacterial regulatory proteins, gntR family VagYM19_24500 PF07729 FCD domain VagYM19_24510 PF01510 N-acetylmuramoyl-L-alanine amidase VagYM19_24520 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VagYM19_24520 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VagYM19_24540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VagYM19_24540 PF00437 Type II/IV secretion system protein VagYM19_24550 PF00482 Type II secretion system (T2SS), protein F VagYM19_24560 PF06750 Bacterial Peptidase A24 N-terminal domain VagYM19_24560 PF01478 Type IV leader peptidase family VagYM19_24570 PF01121 Dephospho-CoA kinase VagYM19_24580 PF07072 Cell division protein VagYM19_24590 PF03884 DNA gyrase inhibitor YacG VagYM19_24600 PF01245 Ribosomal protein L19 VagYM19_24610 PF01746 tRNA (Guanine-1)-methyltransferase VagYM19_24620 PF05239 PRC-barrel domain VagYM19_24620 PF01782 RimM N-terminal domain VagYM19_24630 PF00886 Ribosomal protein S16 VagYM19_24640 PF00448 SRP54-type protein, GTPase domain VagYM19_24640 PF02978 Signal peptide binding domain VagYM19_24640 PF02881 SRP54-type protein, helical bundle domain VagYM19_24650 PF01578 Cytochrome C assembly protein VagYM19_24660 PF00571 CBS domain VagYM19_24660 PF01595 Cyclin M transmembrane N-terminal domain VagYM19_24660 PF03471 Transporter associated domain VagYM19_24670 PF02664 S-Ribosylhomocysteinase (LuxS) VagYM19_24690 PF04262 Glutamate-cysteine ligase VagYM19_24700 PF00675 Insulinase (Peptidase family M16) VagYM19_24700 PF05193 Peptidase M16 inactive domain VagYM19_24710 PF09335 SNARE associated Golgi protein VagYM19_24730 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VagYM19_24740 PF02436 Conserved carboxylase domain VagYM19_24740 PF00682 HMGL-like VagYM19_24740 PF00364 Biotin-requiring enzyme VagYM19_24750 PF04277 Oxaloacetate decarboxylase, gamma chain VagYM19_24760 PF02599 Global regulator protein family VagYM19_24770 PF00696 Amino acid kinase family VagYM19_24770 PF01842 ACT domain VagYM19_24770 PF13840 ACT domain VagYM19_24780 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VagYM19_24780 PF01411 tRNA synthetases class II (A) VagYM19_24780 PF02272 DHHA1 domain VagYM19_24790 PF02631 RecX family VagYM19_24800 PF00154 recA bacterial DNA recombination protein VagYM19_24810 PF02464 Competence-damaged protein VagYM19_24820 PF05192 MutS domain III VagYM19_24820 PF00488 MutS domain V VagYM19_24820 PF01624 MutS domain I VagYM19_24820 PF05188 MutS domain II VagYM19_24820 PF05190 MutS family domain IV VagYM19_24830 PF04539 Sigma-70 region 3 VagYM19_24830 PF04542 Sigma-70 region 2 VagYM19_24830 PF00140 Sigma-70 factor, region 1.2 VagYM19_24830 PF04545 Sigma-70, region 4 VagYM19_24840 PF01551 Peptidase family M23 VagYM19_24840 PF01476 LysM domain VagYM19_24860 PF01975 Survival protein SurE VagYM19_24870 PF01142 tRNA pseudouridine synthase D (TruD) VagYM19_24880 PF02542 YgbB family VagYM19_24890 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VagYM19_24900 PF04977 Septum formation initiator VagYM19_24910 PF03952 Enolase, N-terminal domain VagYM19_24910 PF00113 Enolase, C-terminal TIM barrel domain VagYM19_24920 PF00117 Glutamine amidotransferase class-I VagYM19_24920 PF06418 CTP synthase N-terminus VagYM19_24930 PF03819 MazG nucleotide pyrophosphohydrolase domain VagYM19_24940 PF04607 Region found in RelA / SpoT proteins VagYM19_24940 PF13291 ACT domain VagYM19_24940 PF02824 TGS domain VagYM19_24950 PF05958 tRNA (Uracil-5-)-methyltransferase VagYM19_24950 PF01938 TRAM domain VagYM19_24960 PF00672 HAMP domain VagYM19_24960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_24960 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_24960 PF01627 Hpt domain VagYM19_24960 PF00072 Response regulator receiver domain VagYM19_24960 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VagYM19_24970 PF01648 4'-phosphopantetheinyl transferase superfamily VagYM19_24980 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VagYM19_24990 PF02565 Recombination protein O C terminal VagYM19_24990 PF11967 Recombination protein O N terminal VagYM19_25000 PF01926 50S ribosome-binding GTPase VagYM19_25000 PF07650 KH domain VagYM19_25010 PF14622 Ribonuclease-III-like VagYM19_25010 PF00035 Double-stranded RNA binding motif VagYM19_25020 PF10502 Signal peptidase, peptidase S26 VagYM19_25030 PF00679 Elongation factor G C-terminus VagYM19_25030 PF00009 Elongation factor Tu GTP binding domain VagYM19_25030 PF03144 Elongation factor Tu domain 2 VagYM19_25030 PF06421 GTP-binding protein LepA C-terminus VagYM19_25050 PF17188 MucB/RseB C-terminal domain VagYM19_25050 PF03888 MucB/RseB N-terminal domain VagYM19_25060 PF03873 Anti sigma-E protein RseA, C-terminal domain VagYM19_25060 PF03872 Anti sigma-E protein RseA, N-terminal domain VagYM19_25070 PF04542 Sigma-70 region 2 VagYM19_25070 PF08281 Sigma-70, region 4 VagYM19_25080 PF02910 Fumarate reductase flavoprotein C-term VagYM19_25080 PF00890 FAD binding domain VagYM19_25100 PF03937 Flavinator of succinate dehydrogenase VagYM19_25110 PF01571 Aminomethyltransferase folate-binding domain VagYM19_25140 PF01494 FAD binding domain VagYM19_25150 PF01494 FAD binding domain VagYM19_25160 PF03695 Uncharacterised protein family (UPF0149) VagYM19_25170 PF05164 Cell division protein ZapA VagYM19_25180 PF01812 5-formyltetrahydrofolate cyclo-ligase family VagYM19_25190 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VagYM19_25200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM19_25200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM19_25200 PF01842 ACT domain VagYM19_25210 PF04402 Protein of unknown function (DUF541) VagYM19_25220 PF03466 LysR substrate binding domain VagYM19_25220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_25230 PF01810 LysE type translocator VagYM19_25250 PF00924 Mechanosensitive ion channel VagYM19_25250 PF05552 Conserved TM helix VagYM19_25260 PF01116 Fructose-bisphosphate aldolase class-II VagYM19_25270 PF00162 Phosphoglycerate kinase VagYM19_25280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VagYM19_25280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VagYM19_25290 PF07715 TonB-dependent Receptor Plug Domain VagYM19_25290 PF00593 TonB dependent receptor VagYM19_25300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_25300 PF03466 LysR substrate binding domain VagYM19_25310 PF02779 Transketolase, pyrimidine binding domain VagYM19_25310 PF00456 Transketolase, thiamine diphosphate binding domain VagYM19_25310 PF02780 Transketolase, C-terminal domain VagYM19_25320 PF02772 S-adenosylmethionine synthetase, central domain VagYM19_25320 PF02773 S-adenosylmethionine synthetase, C-terminal domain VagYM19_25320 PF00438 S-adenosylmethionine synthetase, N-terminal domain VagYM19_25340 PF17283 SprT-like zinc ribbon domain VagYM19_25340 PF10263 SprT-like family VagYM19_25350 PF04231 Endonuclease I VagYM19_25360 PF04452 RNA methyltransferase VagYM19_25370 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VagYM19_25370 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VagYM19_25380 PF02622 Uncharacterized ACR, COG1678 VagYM19_25390 PF03652 Holliday junction resolvase VagYM19_25400 PF00437 Type II/IV secretion system protein VagYM19_25410 PF00437 Type II/IV secretion system protein VagYM19_25420 PF01168 Alanine racemase, N-terminal domain VagYM19_25430 PF14748 Pyrroline-5-carboxylate reductase dimerisation VagYM19_25430 PF03807 NADP oxidoreductase coenzyme F420-dependent VagYM19_25440 PF02325 YGGT family VagYM19_25450 PF02594 Uncharacterised ACR, YggU family COG1872 VagYM19_25470 PF01725 Ham1 family VagYM19_25480 PF04055 Radical SAM superfamily VagYM19_25480 PF06969 HemN C-terminal domain VagYM19_25490 PF04960 Glutaminase VagYM19_25500 PF02086 D12 class N6 adenine-specific DNA methyltransferase VagYM19_25510 PF02390 Putative methyltransferase VagYM19_25520 PF14815 NUDIX domain VagYM19_25520 PF00730 HhH-GPD superfamily base excision DNA repair protein VagYM19_25520 PF00633 Helix-hairpin-helix motif VagYM19_25530 PF04362 Bacterial Fe(2+) trafficking VagYM19_25540 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VagYM19_25540 PF01464 Transglycosylase SLT domain VagYM19_25550 PF17200 Single Cache domain 2 VagYM19_25550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_25550 PF00672 HAMP domain VagYM19_25560 PF00171 Aldehyde dehydrogenase family VagYM19_25580 PF00356 Bacterial regulatory proteins, lacI family VagYM19_25580 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VagYM19_25590 PF04794 YdjC-like protein VagYM19_25600 PF11975 Family 4 glycosyl hydrolase C-terminal domain VagYM19_25600 PF02056 Family 4 glycosyl hydrolase VagYM19_25610 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VagYM19_25620 PF02378 Phosphotransferase system, EIIC VagYM19_25630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM19_25640 PF01522 Polysaccharide deacetylase VagYM19_25650 PF08448 PAS fold VagYM19_25650 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_25660 PF02371 Transposase IS116/IS110/IS902 family VagYM19_25660 PF01548 Transposase VagYM19_25670 PF02371 Transposase IS116/IS110/IS902 family VagYM19_25670 PF01548 Transposase VagYM19_25690 PF13737 Transposase DDE domain VagYM19_25710 PF00483 Nucleotidyl transferase VagYM19_25790 PF00072 Response regulator receiver domain VagYM19_25790 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_25960 PF10011 Predicted membrane protein (DUF2254) VagYM19_25980 PF03739 Lipopolysaccharide export system permease LptF/LptG VagYM19_25990 PF03739 Lipopolysaccharide export system permease LptF/LptG VagYM19_26000 PF02789 Cytosol aminopeptidase family, N-terminal domain VagYM19_26000 PF00883 Cytosol aminopeptidase family, catalytic domain VagYM19_26010 PF04364 DNA polymerase III chi subunit, HolC VagYM19_26020 PF10458 Valyl tRNA synthetase tRNA binding arm VagYM19_26020 PF00133 tRNA synthetases class I (I, L, M and V) VagYM19_26020 PF08264 Anticodon-binding domain of tRNA VagYM19_26040 PF00583 Acetyltransferase (GNAT) family VagYM19_26060 PF06877 Regulator of ribonuclease activity B VagYM19_26080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VagYM19_26080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VagYM19_26100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VagYM19_26100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VagYM19_26110 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VagYM19_26110 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VagYM19_26120 PF01042 Endoribonuclease L-PSP VagYM19_26130 PF01553 Acyltransferase VagYM19_26140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VagYM19_26150 PF01722 BolA-like protein VagYM19_26170 PF05494 MlaC protein VagYM19_26180 PF02470 MlaD protein VagYM19_26190 PF02405 Permease MlaE VagYM19_26200 PF00005 ABC transporter VagYM19_26210 PF01699 Sodium/calcium exchanger protein VagYM19_26220 PF01380 SIS domain VagYM19_26220 PF00571 CBS domain VagYM19_26240 PF03968 OstA-like protein VagYM19_26250 PF12399 Branched-chain amino acid ATP-binding cassette transporter VagYM19_26250 PF00005 ABC transporter VagYM19_26260 PF04552 Sigma-54, DNA binding domain VagYM19_26260 PF04963 Sigma-54 factor, core binding domain VagYM19_26260 PF00309 Sigma-54 factor, Activator interacting domain (AID) VagYM19_26270 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VagYM19_26280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM19_26290 PF03668 P-loop ATPase protein family VagYM19_26300 PF00381 PTS HPr component phosphorylation site VagYM19_26310 PF03448 MgtE intracellular N domain VagYM19_26310 PF01769 Divalent cation transporter VagYM19_26310 PF00571 CBS domain VagYM19_26320 PF01523 Putative modulator of DNA gyrase VagYM19_26330 PF04751 Protein of unknown function (DUF615) VagYM19_26340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM19_26340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM19_26350 PF00849 RNA pseudouridylate synthase VagYM19_26370 PF18339 RapA N-terminal Tudor like domain 1 VagYM19_26370 PF00176 SNF2 family N-terminal domain VagYM19_26370 PF12137 RNA polymerase recycling family C-terminal VagYM19_26370 PF18337 RapA N-terminal Tudor like domain VagYM19_26370 PF00271 Helicase conserved C-terminal domain VagYM19_26380 PF02562 PhoH-like protein VagYM19_26380 PF13638 PIN domain VagYM19_26390 PF01523 Putative modulator of DNA gyrase VagYM19_26400 PF00795 Carbon-nitrogen hydrolase VagYM19_26410 PF13502 AsmA-like C-terminal region VagYM19_26410 PF13116 Protein of unknown function VagYM19_26420 PF00575 S1 RNA binding domain VagYM19_26420 PF10150 Ribonuclease E/G family VagYM19_26430 PF02545 Maf-like protein VagYM19_26440 PF04093 rod shape-determining protein MreD VagYM19_26450 PF04085 rod shape-determining protein MreC VagYM19_26530 PF07963 Prokaryotic N-terminal methylation motif VagYM19_26530 PF00114 Pilin (bacterial filament) VagYM19_26550 PF00482 Type II secretion system (T2SS), protein F VagYM19_26560 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VagYM19_26560 PF00437 Type II/IV secretion system protein VagYM19_26580 PF13401 AAA domain VagYM19_26580 PF01471 Putative peptidoglycan binding domain VagYM19_26590 PF03958 Bacterial type II/III secretion system short domain VagYM19_26590 PF00263 Bacterial type II and III secretion system protein VagYM19_26630 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_26630 PF00563 EAL domain VagYM19_26630 PF17157 Gammaproteobacterial periplasmic sensor domain VagYM19_26640 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VagYM19_26640 PF01348 Type II intron maturase VagYM19_26650 PF00436 Single-strand binding protein family VagYM19_26660 PF00196 Bacterial regulatory proteins, luxR family VagYM19_26670 PF00483 Nucleotidyl transferase VagYM19_26680 PF17760 UvrA interaction domain VagYM19_26680 PF00005 ABC transporter VagYM19_26680 PF17755 UvrA DNA-binding domain VagYM19_26700 PF00266 Aminotransferase class-V VagYM19_26710 PF01842 ACT domain VagYM19_26710 PF00696 Amino acid kinase family VagYM19_26720 PF02310 B12 binding domain VagYM19_26720 PF00809 Pterin binding enzyme VagYM19_26720 PF02965 Vitamin B12 dependent methionine synthase, activation domain VagYM19_26720 PF02574 Homocysteine S-methyltransferase VagYM19_26720 PF02607 B12 binding domain VagYM19_26730 PF00999 Sodium/hydrogen exchanger family VagYM19_26740 PF00665 Integrase core domain VagYM19_26750 PF01527 Transposase VagYM19_26760 PF01507 Phosphoadenosine phosphosulfate reductase family VagYM19_26770 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VagYM19_26770 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VagYM19_26780 PF00175 Oxidoreductase NAD-binding domain VagYM19_26780 PF00667 FAD binding domain VagYM19_26780 PF00258 Flavodoxin VagYM19_26820 PF01207 Dihydrouridine synthase (Dus) VagYM19_26850 PF01810 LysE type translocator VagYM19_26870 PF02754 Cysteine-rich domain VagYM19_26870 PF13183 4Fe-4S dicluster domain VagYM19_26880 PF00890 FAD binding domain VagYM19_26890 PF04324 BFD-like [2Fe-2S] binding domain VagYM19_26890 PF01266 FAD dependent oxidoreductase VagYM19_26900 PF13737 Transposase DDE domain VagYM19_27030 PF01475 Ferric uptake regulator family VagYM19_27050 PF00342 Phosphoglucose isomerase VagYM19_27070 PF01894 Uncharacterised protein family UPF0047 VagYM19_27080 PF01168 Alanine racemase, N-terminal domain VagYM19_27080 PF00842 Alanine racemase, C-terminal domain VagYM19_27090 PF00772 DnaB-like helicase N terminal domain VagYM19_27090 PF03796 DnaB-like helicase C terminal domain VagYM19_27110 PF01281 Ribosomal protein L9, N-terminal domain VagYM19_27110 PF03948 Ribosomal protein L9, C-terminal domain VagYM19_27120 PF01084 Ribosomal protein S18 VagYM19_27130 PF00436 Single-strand binding protein family VagYM19_27140 PF01250 Ribosomal protein S6 VagYM19_27150 PF00834 Ribulose-phosphate 3 epimerase family VagYM19_27160 PF02086 D12 class N6 adenine-specific DNA methyltransferase VagYM19_27180 PF01761 3-dehydroquinate synthase VagYM19_27190 PF01202 Shikimate kinase VagYM19_27200 PF00263 Bacterial type II and III secretion system protein VagYM19_27200 PF03958 Bacterial type II/III secretion system short domain VagYM19_27200 PF07660 Secretin and TonB N terminus short domain VagYM19_27200 PF11741 AMIN domain VagYM19_27250 PF00912 Transglycosylase VagYM19_27250 PF00905 Penicillin binding protein transpeptidase domain VagYM19_27250 PF17092 Penicillin-binding protein OB-like domain VagYM19_27260 PF03466 LysR substrate binding domain VagYM19_27260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_27270 PF00462 Glutaredoxin VagYM19_27270 PF08534 Redoxin VagYM19_27280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM19_27280 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_27310 PF00583 Acetyltransferase (GNAT) family VagYM19_27310 PF14698 Argininosuccinate lyase C-terminal VagYM19_27310 PF00206 Lyase VagYM19_27320 PF00764 Arginosuccinate synthase VagYM19_27330 PF00696 Amino acid kinase family VagYM19_27340 PF01118 Semialdehyde dehydrogenase, NAD binding domain VagYM19_27340 PF02774 Semialdehyde dehydrogenase, dimerisation domain VagYM19_27350 PF01546 Peptidase family M20/M25/M40 VagYM19_27350 PF07687 Peptidase dimerisation domain VagYM19_27360 PF00311 Phosphoenolpyruvate carboxylase VagYM19_27380 PF02219 Methylenetetrahydrofolate reductase VagYM19_27390 PF00742 Homoserine dehydrogenase VagYM19_27390 PF03447 Homoserine dehydrogenase, NAD binding domain VagYM19_27390 PF00696 Amino acid kinase family VagYM19_27400 PF01053 Cys/Met metabolism PLP-dependent enzyme VagYM19_27420 PF00390 Malic enzyme, N-terminal domain VagYM19_27420 PF03949 Malic enzyme, NAD binding domain VagYM19_27430 PF00210 Ferritin-like domain VagYM19_27440 PF04324 BFD-like [2Fe-2S] binding domain VagYM19_27450 PF03144 Elongation factor Tu domain 2 VagYM19_27450 PF03143 Elongation factor Tu C-terminal domain VagYM19_27450 PF00009 Elongation factor Tu GTP binding domain VagYM19_27460 PF00679 Elongation factor G C-terminus VagYM19_27460 PF03144 Elongation factor Tu domain 2 VagYM19_27460 PF00009 Elongation factor Tu GTP binding domain VagYM19_27460 PF14492 Elongation Factor G, domain II VagYM19_27460 PF03764 Elongation factor G, domain IV VagYM19_27470 PF00177 Ribosomal protein S7p/S5e VagYM19_27480 PF00164 Ribosomal protein S12/S23 VagYM19_27490 PF04077 DsrH like protein VagYM19_27500 PF02635 DsrE/DsrF-like family VagYM19_27510 PF02635 DsrE/DsrF-like family VagYM19_27520 PF08348 YheO-like PAS domain VagYM19_27520 PF13309 HTH domain VagYM19_27530 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VagYM19_27530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM19_27550 PF04102 SlyX VagYM19_27560 PF01112 Asparaginase VagYM19_27570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM19_27590 PF00999 Sodium/hydrogen exchanger family VagYM19_27590 PF02254 TrkA-N domain VagYM19_27600 PF02525 Flavodoxin-like fold VagYM19_27610 PF00005 ABC transporter VagYM19_27610 PF12848 ABC transporter VagYM19_27630 PF00561 alpha/beta hydrolase fold VagYM19_27640 PF06794 Uncharacterised protein family (UPF0270) VagYM19_27650 PF00485 Phosphoribulokinase / Uridine kinase family VagYM19_27660 PF13545 Crp-like helix-turn-helix domain VagYM19_27660 PF00027 Cyclic nucleotide-binding domain VagYM19_27680 PF00171 Aldehyde dehydrogenase family VagYM19_27690 PF04958 Arginine N-succinyltransferase beta subunit VagYM19_27700 PF00202 Aminotransferase class-III VagYM19_27710 PF00117 Glutamine amidotransferase class-I VagYM19_27740 PF00579 tRNA synthetases class I (W and Y) VagYM19_27750 PF13419 Haloacid dehalogenase-like hydrolase VagYM19_27760 PF00588 SpoU rRNA Methylase family VagYM19_27760 PF08032 RNA 2'-O ribose methyltransferase substrate binding VagYM19_27770 PF08206 Ribonuclease B OB domain VagYM19_27770 PF00773 RNB domain VagYM19_27770 PF00575 S1 RNA binding domain VagYM19_27770 PF08461 Ribonuclease R winged-helix domain VagYM19_27770 PF17876 Cold shock domain VagYM19_27780 PF02082 Transcriptional regulator VagYM19_27790 PF00175 Oxidoreductase NAD-binding domain VagYM19_27790 PF00042 Globin VagYM19_27790 PF00970 Oxidoreductase FAD-binding domain VagYM19_27800 PF08238 Sel1 repeat VagYM19_27810 PF00709 Adenylosuccinate synthetase VagYM19_27820 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VagYM19_27830 PF01145 SPFH domain / Band 7 family VagYM19_27840 PF01145 SPFH domain / Band 7 family VagYM19_27840 PF12221 Bacterial membrane protein N terminal VagYM19_27850 PF16360 GTP-binding GTPase Middle Region VagYM19_27850 PF01926 50S ribosome-binding GTPase VagYM19_27850 PF13167 GTP-binding GTPase N-terminal VagYM19_27860 PF17209 Hfq protein VagYM19_27880 PF01119 DNA mismatch repair protein, C-terminal domain VagYM19_27880 PF08676 MutL C terminal dimerisation domain VagYM19_27890 PF01520 N-acetylmuramoyl-L-alanine amidase VagYM19_27900 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VagYM19_27910 PF08331 Domain of unknown function (DUF1730) VagYM19_27920 PF00929 Exonuclease VagYM19_27930 PF03193 RsgA GTPase VagYM19_27940 PF02666 Phosphatidylserine decarboxylase VagYM19_27950 PF03600 Citrate transporter VagYM19_27950 PF02080 TrkA-C domain VagYM19_27970 PF01676 Metalloenzyme superfamily VagYM19_27970 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VagYM19_27980 PF00581 Rhodanese-like domain VagYM19_27990 PF02556 Preprotein translocase subunit SecB VagYM19_28000 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VagYM19_28000 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VagYM19_28010 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM19_28010 PF06426 Serine acetyltransferase, N-terminal VagYM19_28020 PF01551 Peptidase family M23 VagYM19_28040 PF00440 Bacterial regulatory proteins, tetR family VagYM19_28040 PF08360 QacR-like protein, C-terminal region VagYM19_28060 PF00152 tRNA synthetases class II (D, K and N) VagYM19_28070 PF02910 Fumarate reductase flavoprotein C-term VagYM19_28070 PF00890 FAD binding domain VagYM19_28080 PF13085 2Fe-2S iron-sulfur cluster binding domain VagYM19_28080 PF13183 4Fe-4S dicluster domain VagYM19_28090 PF02300 Fumarate reductase subunit C VagYM19_28100 PF02313 Fumarate reductase subunit D VagYM19_28120 PF01132 Elongation factor P (EF-P) OB domain VagYM19_28120 PF09285 Elongation factor P, C-terminal VagYM19_28120 PF08207 Elongation factor P (EF-P) KOW-like domain VagYM19_28130 PF04055 Radical SAM superfamily VagYM19_28140 PF02308 MgtC family VagYM19_28160 PF00118 TCP-1/cpn60 chaperonin family VagYM19_28170 PF00166 Chaperonin 10 Kd subunit VagYM19_28180 PF01554 MatE VagYM19_28190 PF00365 Phosphofructokinase VagYM19_28200 PF16916 Dimerisation domain of Zinc Transporter VagYM19_28200 PF01545 Cation efflux family VagYM19_28220 PF00486 Transcriptional regulatory protein, C terminal VagYM19_28220 PF00072 Response regulator receiver domain VagYM19_28230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_28230 PF00672 HAMP domain VagYM19_28230 PF16527 Two-component sensor protein CpxA, periplasmic domain VagYM19_28230 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_28240 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VagYM19_28240 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VagYM19_28250 PF00588 SpoU rRNA Methylase family VagYM19_28260 PF04186 FxsA cytoplasmic membrane protein VagYM19_28270 PF00206 Lyase VagYM19_28270 PF10415 Fumarase C C-terminus VagYM19_28280 PF03605 Anaerobic c4-dicarboxylate membrane transporter VagYM19_28290 PF11412 Disulphide bond corrector protein DsbC VagYM19_28290 PF02683 Cytochrome C biogenesis protein transmembrane region VagYM19_28300 PF00196 Bacterial regulatory proteins, luxR family VagYM19_28300 PF00072 Response regulator receiver domain VagYM19_28310 PF00999 Sodium/hydrogen exchanger family VagYM19_28310 PF02080 TrkA-C domain VagYM19_28310 PF03471 Transporter associated domain VagYM19_28330 PF00474 Sodium:solute symporter family VagYM19_28360 PF10415 Fumarase C C-terminus VagYM19_28360 PF00206 Lyase VagYM19_28370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_28370 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_28370 PF09308 LuxQ, periplasmic VagYM19_28370 PF00072 Response regulator receiver domain VagYM19_28380 PF12832 MFS_1 like family VagYM19_28410 PF00501 AMP-binding enzyme VagYM19_28410 PF13193 AMP-binding enzyme C-terminal domain VagYM19_28410 PF16177 Acetyl-coenzyme A synthetase N-terminus VagYM19_28420 PF01220 Dehydroquinase class II VagYM19_28430 PF00364 Biotin-requiring enzyme VagYM19_28440 PF02785 Biotin carboxylase C-terminal domain VagYM19_28440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VagYM19_28440 PF00289 Biotin carboxylase, N-terminal domain VagYM19_28460 PF01207 Dihydrouridine synthase (Dus) VagYM19_28470 PF02954 Bacterial regulatory protein, Fis family VagYM19_28490 PF00005 ABC transporter VagYM19_28490 PF12848 ABC transporter VagYM19_28500 PF01276 Orn/Lys/Arg decarboxylase, major domain VagYM19_28500 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VagYM19_28500 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VagYM19_28510 PF13520 Amino acid permease VagYM19_28530 PF18500 CadC C-terminal domain 1 VagYM19_28530 PF00486 Transcriptional regulatory protein, C terminal VagYM19_28540 PF13411 MerR HTH family regulatory protein VagYM19_28550 PF01808 AICARFT/IMPCHase bienzyme VagYM19_28550 PF02142 MGS-like domain VagYM19_28560 PF02844 Phosphoribosylglycinamide synthetase, N domain VagYM19_28560 PF02843 Phosphoribosylglycinamide synthetase, C domain VagYM19_28560 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VagYM19_28580 PF00216 Bacterial DNA-binding protein VagYM19_28590 PF01595 Cyclin M transmembrane N-terminal domain VagYM19_28590 PF00571 CBS domain VagYM19_28600 PF04222 Protein of unknown function (DUF416) VagYM19_28610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM19_28620 PF03167 Uracil DNA glycosylase superfamily VagYM19_28630 PF01208 Uroporphyrinogen decarboxylase (URO-D) VagYM19_28640 PF09297 NADH pyrophosphatase zinc ribbon domain VagYM19_28640 PF00293 NUDIX domain VagYM19_28650 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VagYM19_28660 PF04997 RNA polymerase Rpb1, domain 1 VagYM19_28660 PF04998 RNA polymerase Rpb1, domain 5 VagYM19_28660 PF00623 RNA polymerase Rpb1, domain 2 VagYM19_28660 PF04983 RNA polymerase Rpb1, domain 3 VagYM19_28660 PF05000 RNA polymerase Rpb1, domain 4 VagYM19_28670 PF00562 RNA polymerase Rpb2, domain 6 VagYM19_28670 PF04560 RNA polymerase Rpb2, domain 7 VagYM19_28670 PF10385 RNA polymerase beta subunit external 1 domain VagYM19_28670 PF04565 RNA polymerase Rpb2, domain 3 VagYM19_28670 PF04561 RNA polymerase Rpb2, domain 2 VagYM19_28670 PF04563 RNA polymerase beta subunit VagYM19_28680 PF16320 Ribosomal protein L7/L12 dimerisation domain VagYM19_28680 PF00542 Ribosomal protein L7/L12 C-terminal domain VagYM19_28690 PF00466 Ribosomal protein L10 VagYM19_28700 PF00687 Ribosomal protein L1p/L10e family VagYM19_28710 PF00298 Ribosomal protein L11, RNA binding domain VagYM19_28710 PF03946 Ribosomal protein L11, N-terminal domain VagYM19_28720 PF00467 KOW motif VagYM19_28720 PF02357 Transcription termination factor nusG VagYM19_28730 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VagYM19_28740 PF03143 Elongation factor Tu C-terminal domain VagYM19_28740 PF03144 Elongation factor Tu domain 2 VagYM19_28740 PF00009 Elongation factor Tu GTP binding domain VagYM19_28750 PF00485 Phosphoribulokinase / Uridine kinase family VagYM19_28760 PF02237 Biotin protein ligase C terminal domain VagYM19_28760 PF08279 HTH domain VagYM19_28760 PF03099 Biotin/lipoate A/B protein ligase family VagYM19_28770 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VagYM19_28770 PF01565 FAD binding domain VagYM19_28790 PF13091 PLD-like domain VagYM19_28810 PF01177 Asp/Glu/Hydantoin racemase VagYM19_28830 PF07715 TonB-dependent Receptor Plug Domain VagYM19_28830 PF00593 TonB dependent receptor VagYM19_28840 PF05958 tRNA (Uracil-5-)-methyltransferase VagYM19_28860 PF00440 Bacterial regulatory proteins, tetR family VagYM19_28870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM19_28870 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_28880 PF01554 MatE VagYM19_28890 PF04072 Leucine carboxyl methyltransferase VagYM19_28900 PF00717 Peptidase S24-like VagYM19_28900 PF01726 LexA DNA binding domain VagYM19_28910 PF01553 Acyltransferase VagYM19_28920 PF01040 UbiA prenyltransferase family VagYM19_28930 PF04345 Chorismate lyase VagYM19_28940 PF03748 Flagellar basal body-associated protein FliL VagYM19_28950 PF01694 Rhomboid family VagYM19_28950 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VagYM19_28960 PF00581 Rhodanese-like domain VagYM19_28970 PF04542 Sigma-70 region 2 VagYM19_28970 PF04545 Sigma-70, region 4 VagYM19_28970 PF00140 Sigma-70 factor, region 1.2 VagYM19_28980 PF18075 FtsX extracellular domain VagYM19_28990 PF00005 ABC transporter VagYM19_29000 PF00448 SRP54-type protein, GTPase domain VagYM19_29000 PF02881 SRP54-type protein, helical bundle domain VagYM19_29030 PF01914 MarC family integral membrane protein VagYM19_29080 PF10694 Protein of unknown function (DUF2500) VagYM19_29120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VagYM19_29120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VagYM19_29130 PF01022 Bacterial regulatory protein, arsR family VagYM19_29140 PF00563 EAL domain VagYM19_29140 PF08668 HDOD domain VagYM19_29150 PF01810 LysE type translocator VagYM19_29160 PF12146 Serine aminopeptidase, S33 VagYM19_29210 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_29210 PF08495 FIST N domain VagYM19_29210 PF10442 FIST C domain VagYM19_29210 PF00563 EAL domain VagYM19_29220 PF13419 Haloacid dehalogenase-like hydrolase VagYM19_29230 PF02899 Phage integrase, N-terminal SAM-like domain VagYM19_29230 PF00589 Phage integrase family VagYM19_29250 PF01678 Diaminopimelate epimerase VagYM19_29260 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VagYM19_29260 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VagYM19_29270 PF01491 Frataxin-like domain VagYM19_29290 PF01295 Adenylate cyclase, class-I VagYM19_29290 PF12633 Adenylate cyclase NT domain VagYM19_29300 PF03900 Porphobilinogen deaminase, C-terminal domain VagYM19_29300 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VagYM19_29310 PF02602 Uroporphyrinogen-III synthase HemD VagYM19_29320 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VagYM19_29330 PF07219 HemY protein N-terminus VagYM19_29340 PF00175 Oxidoreductase NAD-binding domain VagYM19_29350 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM19_29360 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VagYM19_29380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM19_29380 PF07497 Rho termination factor, RNA-binding domain VagYM19_29380 PF07498 Rho termination factor, N-terminal domain VagYM19_29390 PF00085 Thioredoxin VagYM19_29400 PF00271 Helicase conserved C-terminal domain VagYM19_29400 PF00270 DEAD/DEAH box helicase VagYM19_29410 PF02541 Ppx/GppA phosphatase family VagYM19_29420 PF02592 Putative vitamin uptake transporter VagYM19_29440 PF00570 HRDC domain VagYM19_29440 PF00270 DEAD/DEAH box helicase VagYM19_29440 PF16124 RecQ zinc-binding VagYM19_29440 PF00271 Helicase conserved C-terminal domain VagYM19_29440 PF09382 RQC domain VagYM19_29450 PF00892 EamA-like transporter family VagYM19_29470 PF01810 LysE type translocator VagYM19_29500 PF13361 UvrD-like helicase C-terminal domain VagYM19_29500 PF00580 UvrD/REP helicase N-terminal domain VagYM19_29520 PF05114 Protein of unknown function (DUF692) VagYM19_29560 PF07690 Major Facilitator Superfamily VagYM19_29570 PF03466 LysR substrate binding domain VagYM19_29570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_29580 PF01321 Creatinase/Prolidase N-terminal domain VagYM19_29580 PF00557 Metallopeptidase family M24 VagYM19_29580 PF01321 Creatinase/Prolidase N-terminal domain VagYM19_29580 PF00557 Metallopeptidase family M24 VagYM19_29590 PF06968 Biotin and Thiamin Synthesis associated domain VagYM19_29590 PF04055 Radical SAM superfamily VagYM19_29600 PF05690 Thiazole biosynthesis protein ThiG VagYM19_29620 PF00899 ThiF family VagYM19_29630 PF02581 Thiamine monophosphate synthase VagYM19_29640 PF13667 ThiC-associated domain VagYM19_29640 PF01964 Radical SAM ThiC family VagYM19_29650 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VagYM19_29660 PF00394 Multicopper oxidase VagYM19_29660 PF07732 Multicopper oxidase VagYM19_29660 PF07731 Multicopper oxidase VagYM19_29670 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM19_29680 PF07369 Protein of unknown function (DUF1488) VagYM19_29690 PF08501 Shikimate dehydrogenase substrate binding domain VagYM19_29690 PF01488 Shikimate / quinate 5-dehydrogenase VagYM19_29690 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VagYM19_29700 PF01218 Coproporphyrinogen III oxidase VagYM19_29710 PF01300 Telomere recombination VagYM19_29720 PF00731 AIR carboxylase VagYM19_29730 PF02222 ATP-grasp domain VagYM19_29730 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VagYM19_29740 PF01396 Topoisomerase DNA binding C4 zinc finger VagYM19_29750 PF04361 Protein of unknown function (DUF494) VagYM19_29760 PF17782 DprA winged helix domain VagYM19_29760 PF02481 DNA recombination-mediator protein A VagYM19_29780 PF01327 Polypeptide deformylase VagYM19_29790 PF02911 Formyl transferase, C-terminal domain VagYM19_29790 PF00551 Formyl transferase VagYM19_29800 PF01189 16S rRNA methyltransferase RsmB/F VagYM19_29800 PF01029 NusB family VagYM19_29810 PF01029 NusB family VagYM19_29810 PF01189 16S rRNA methyltransferase RsmB/F VagYM19_29820 PF02254 TrkA-N domain VagYM19_29820 PF02080 TrkA-C domain VagYM19_29830 PF02386 Cation transport protein VagYM19_29850 PF03006 Haemolysin-III related VagYM19_29860 PF07070 SpoOM protein VagYM19_29880 PF06288 Protein of unknown function (DUF1040) VagYM19_29890 PF13746 4Fe-4S dicluster domain VagYM19_29890 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VagYM19_29890 PF12801 4Fe-4S binding domain VagYM19_29900 PF01636 Phosphotransferase enzyme family VagYM19_29910 PF01323 DSBA-like thioredoxin domain VagYM19_29920 PF01553 Acyltransferase VagYM19_29940 PF13335 Magnesium chelatase, subunit ChlI C-terminal VagYM19_29940 PF01078 Magnesium chelatase, subunit ChlI VagYM19_29950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM19_29950 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VagYM19_29950 PF00205 Thiamine pyrophosphate enzyme, central domain VagYM19_29970 PF01063 Amino-transferase class IV VagYM19_29980 PF00920 Dehydratase family VagYM19_29990 PF00585 C-terminal regulatory domain of Threonine dehydratase VagYM19_29990 PF00291 Pyridoxal-phosphate dependent enzyme VagYM19_30000 PF03466 LysR substrate binding domain VagYM19_30000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_30010 PF07690 Major Facilitator Superfamily VagYM19_30020 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_30030 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_30040 PF12804 MobA-like NTP transferase domain VagYM19_30040 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM19_30050 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VagYM19_30050 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VagYM19_30060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM19_30060 PF02874 ATP synthase alpha/beta family, beta-barrel domain VagYM19_30070 PF00231 ATP synthase VagYM19_30080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM19_30080 PF02874 ATP synthase alpha/beta family, beta-barrel domain VagYM19_30080 PF00306 ATP synthase alpha/beta chain, C terminal domain VagYM19_30090 PF00213 ATP synthase delta (OSCP) subunit VagYM19_30100 PF00430 ATP synthase B/B' CF(0) VagYM19_30110 PF00137 ATP synthase subunit C VagYM19_30120 PF00119 ATP synthase A chain VagYM19_30130 PF03899 ATP synthase I chain VagYM19_30140 PF17762 HTH domain found in ParB protein VagYM19_30140 PF02195 ParB-like nuclease domain VagYM19_30150 PF13614 AAA domain VagYM19_30160 PF02527 rRNA small subunit methyltransferase G VagYM19_30170 PF13932 GidA associated domain VagYM19_30170 PF01134 Glucose inhibited division protein A VagYM19_30180 PF00258 Flavodoxin VagYM19_30200 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_30200 PF08448 PAS fold VagYM19_30210 PF10509 Galactokinase galactose-binding signature VagYM19_30210 PF00288 GHMP kinases N terminal domain VagYM19_30210 PF08544 GHMP kinases C terminal VagYM19_30220 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VagYM19_30220 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VagYM19_30230 PF16363 GDP-mannose 4,6 dehydratase VagYM19_30240 PF00474 Sodium:solute symporter family VagYM19_30250 PF16874 Glycosyl hydrolase family 36 C-terminal domain VagYM19_30250 PF16875 Glycosyl hydrolase family 36 N-terminal domain VagYM19_30260 PF00356 Bacterial regulatory proteins, lacI family VagYM19_30470 PF02899 Phage integrase, N-terminal SAM-like domain VagYM19_30470 PF00589 Phage integrase family VagYM19_30480 PF10396 GTP-binding protein TrmE N-terminus VagYM19_30480 PF12631 MnmE helical domain VagYM19_30480 PF01926 50S ribosome-binding GTPase VagYM19_30490 PF02096 60Kd inner membrane protein VagYM19_30490 PF14849 YidC periplasmic domain VagYM19_30500 PF00825 Ribonuclease P VagYM19_30510 PF00468 Ribosomal protein L34 VagYM19_30520 PF00005 ABC transporter VagYM19_30530 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_30540 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_30570 PF00005 ABC transporter VagYM19_30570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_30580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_30580 PF00005 ABC transporter VagYM19_30600 PF00925 GTP cyclohydrolase II VagYM19_30600 PF08719 Domain of unknown function (DUF1768) VagYM19_30620 PF00672 HAMP domain VagYM19_30620 PF00072 Response regulator receiver domain VagYM19_30620 PF01627 Hpt domain VagYM19_30620 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_30620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_30620 PF17149 Periplasmic sensor domain found in signal transduction proteins VagYM19_30640 PF01709 Transcriptional regulator VagYM19_30650 PF01098 Cell cycle protein VagYM19_30670 PF00005 ABC transporter VagYM19_30710 PF13492 GAF domain VagYM19_30710 PF06580 Histidine kinase VagYM19_30710 PF07694 5TMR of 5TMR-LYT VagYM19_30710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_30720 PF00072 Response regulator receiver domain VagYM19_30720 PF04397 LytTr DNA-binding domain VagYM19_30740 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VagYM19_30750 PF17200 Single Cache domain 2 VagYM19_30750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_30750 PF00672 HAMP domain VagYM19_30780 PF03616 Sodium/glutamate symporter VagYM19_30800 PF00005 ABC transporter VagYM19_30810 PF00392 Bacterial regulatory proteins, gntR family VagYM19_30810 PF00155 Aminotransferase class I and II VagYM19_30820 PF03616 Sodium/glutamate symporter VagYM19_30840 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VagYM19_30870 PF03466 LysR substrate binding domain VagYM19_30870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_30880 PF02678 Pirin VagYM19_30880 PF17954 Quercetinase C-terminal cupin domain VagYM19_30890 PF07681 DoxX VagYM19_30910 PF00730 HhH-GPD superfamily base excision DNA repair protein VagYM19_30910 PF06029 AlkA N-terminal domain VagYM19_30920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VagYM19_30920 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VagYM19_30940 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VagYM19_30960 PF03600 Citrate transporter VagYM19_31000 PF12697 Alpha/beta hydrolase family VagYM19_31010 PF00704 Glycosyl hydrolases family 18 VagYM19_31010 PF08329 Chitinase A, N-terminal domain VagYM19_31030 PF06865 Pyrimidine/purine nucleoside phosphorylase VagYM19_31050 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_31050 PF03707 Bacterial signalling protein N terminal repeat VagYM19_31050 PF00563 EAL domain VagYM19_31060 PF01554 MatE VagYM19_31070 PF00849 RNA pseudouridylate synthase VagYM19_31100 PF03466 LysR substrate binding domain VagYM19_31100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_31130 PF17152 Periplasmic sensor domain VagYM19_31130 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_31150 PF00756 Putative esterase VagYM19_31160 PF08240 Alcohol dehydrogenase GroES-like domain VagYM19_31160 PF00107 Zinc-binding dehydrogenase VagYM19_31170 PF00797 N-acetyltransferase VagYM19_31180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_31180 PF03466 LysR substrate binding domain VagYM19_31190 PF08021 Siderophore-interacting FAD-binding domain VagYM19_31190 PF04954 Siderophore-interacting protein VagYM19_31200 PF00326 Prolyl oligopeptidase family VagYM19_31210 PF01810 LysE type translocator VagYM19_31220 PF01037 Lrp/AsnC ligand binding domain VagYM19_31230 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VagYM19_31230 PF18416 N-acetylglucosamine binding protein domain 2 VagYM19_31260 PF13599 Pentapeptide repeats (9 copies) VagYM19_31270 PF03922 OmpW family VagYM19_31280 PF13533 Biotin-lipoyl like VagYM19_31290 PF07690 Major Facilitator Superfamily VagYM19_31310 PF12706 Beta-lactamase superfamily domain VagYM19_31330 PF01204 Trehalase VagYM19_31340 PF01661 Macro domain VagYM19_31350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM19_31360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_31360 PF03466 LysR substrate binding domain VagYM19_31380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_31380 PF03466 LysR substrate binding domain VagYM19_31410 PF13419 Haloacid dehalogenase-like hydrolase VagYM19_31460 PF05651 Putative sugar diacid recognition VagYM19_31460 PF17853 GGDEF-like domain VagYM19_31460 PF13556 PucR C-terminal helix-turn-helix domain VagYM19_31470 PF02447 GntP family permease VagYM19_31480 PF02595 Glycerate kinase family VagYM19_31490 PF00155 Aminotransferase class I and II VagYM19_31490 PF00392 Bacterial regulatory proteins, gntR family VagYM19_31530 PF00583 Acetyltransferase (GNAT) family VagYM19_31570 PF13302 Acetyltransferase (GNAT) domain VagYM19_31580 PF03264 NapC/NirT cytochrome c family, N-terminal region VagYM19_31590 PF01568 Molydopterin dinucleotide binding domain VagYM19_31590 PF18364 Molybdopterin oxidoreductase N-terminal domain VagYM19_31590 PF00384 Molybdopterin oxidoreductase VagYM19_31610 PF02581 Thiamine monophosphate synthase VagYM19_31620 PF02110 Hydroxyethylthiazole kinase family VagYM19_31630 PF03070 TENA/THI-4/PQQC family VagYM19_31640 PF09084 NMT1/THI5 like VagYM19_31650 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_31660 PF00005 ABC transporter VagYM19_31670 PF08543 Phosphomethylpyrimidine kinase VagYM19_31680 PF01523 Putative modulator of DNA gyrase VagYM19_31690 PF01523 Putative modulator of DNA gyrase VagYM19_31700 PF04013 Putative SAM-dependent RNA methyltransferase VagYM19_31740 PF10928 Protein of unknown function (DUF2810) VagYM19_31750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM19_31750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM19_31770 PF03009 Glycerophosphoryl diester phosphodiesterase family VagYM19_31780 PF00056 lactate/malate dehydrogenase, NAD binding domain VagYM19_31780 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VagYM19_31790 PF00486 Transcriptional regulatory protein, C terminal VagYM19_31790 PF00072 Response regulator receiver domain VagYM19_31800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_31800 PF16750 Sensor domain of 2-component histidine kinase VagYM19_31800 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_31800 PF00672 HAMP domain VagYM19_31810 PF07715 TonB-dependent Receptor Plug Domain VagYM19_31810 PF00593 TonB dependent receptor VagYM19_31830 PF01618 MotA/TolQ/ExbB proton channel family VagYM19_31840 PF01618 MotA/TolQ/ExbB proton channel family VagYM19_31850 PF02472 Biopolymer transport protein ExbD/TolR VagYM19_31940 PF01297 Zinc-uptake complex component A periplasmic VagYM19_31950 PF00005 ABC transporter VagYM19_31960 PF00950 ABC 3 transport family VagYM19_31990 PF00326 Prolyl oligopeptidase family VagYM19_31990 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VagYM19_32000 PF07690 Major Facilitator Superfamily VagYM19_32010 PF00491 Arginase family VagYM19_32020 PF17944 Arginine decarboxylase C-terminal helical extension VagYM19_32020 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VagYM19_32020 PF17810 Arginine decarboxylase helical bundle domain VagYM19_32030 PF00753 Metallo-beta-lactamase superfamily VagYM19_32040 PF08443 RimK-like ATP-grasp domain VagYM19_32040 PF18030 RimK PreATP-grasp domain VagYM19_32050 PF18030 RimK PreATP-grasp domain VagYM19_32050 PF08443 RimK-like ATP-grasp domain VagYM19_32060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_32060 PF03466 LysR substrate binding domain VagYM19_32110 PF00232 Glycosyl hydrolase family 1 VagYM19_32130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_32130 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_32140 PF00072 Response regulator receiver domain VagYM19_32140 PF00158 Sigma-54 interaction domain VagYM19_32140 PF02954 Bacterial regulatory protein, Fis family VagYM19_32150 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_32160 PF05525 Branched-chain amino acid transport protein VagYM19_32190 PF01266 FAD dependent oxidoreductase VagYM19_32210 PF02322 Cytochrome bd terminal oxidase subunit II VagYM19_32220 PF01654 Cytochrome bd terminal oxidase subunit I VagYM19_32230 PF03116 NQR2, RnfD, RnfE family VagYM19_32240 PF01212 Beta-eliminating lyase VagYM19_32260 PF01773 Na+ dependent nucleoside transporter N-terminus VagYM19_32260 PF07662 Na+ dependent nucleoside transporter C-terminus VagYM19_32260 PF07670 Nucleoside recognition VagYM19_32290 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_32290 PF05230 MASE2 domain VagYM19_32320 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_32330 PF03441 FAD binding domain of DNA photolyase VagYM19_32330 PF00875 DNA photolyase VagYM19_32340 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VagYM19_32360 PF01641 SelR domain VagYM19_32360 PF01625 Peptide methionine sulfoxide reductase VagYM19_32370 PF02566 OsmC-like protein VagYM19_32380 PF12464 Maltose acetyltransferase VagYM19_32380 PF14602 Hexapeptide repeat of succinyl-transferase VagYM19_32450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_32450 PF03466 LysR substrate binding domain VagYM19_32460 PF13419 Haloacid dehalogenase-like hydrolase VagYM19_32490 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VagYM19_32500 PF00194 Eukaryotic-type carbonic anhydrase VagYM19_32510 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM19_32520 PF00657 GDSL-like Lipase/Acylhydrolase VagYM19_32530 PF00082 Subtilase family VagYM19_32530 PF05922 Peptidase inhibitor I9 VagYM19_32550 PF03611 PTS system sugar-specific permease component VagYM19_32570 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM19_32580 PF00356 Bacterial regulatory proteins, lacI family VagYM19_32590 PF13419 Haloacid dehalogenase-like hydrolase VagYM19_32610 PF00266 Aminotransferase class-V VagYM19_32630 PF00005 ABC transporter VagYM19_32640 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_32650 PF00392 Bacterial regulatory proteins, gntR family VagYM19_32650 PF07702 UTRA domain VagYM19_32680 PF04393 Protein of unknown function (DUF535) VagYM19_32700 PF01266 FAD dependent oxidoreductase VagYM19_32710 PF00246 Zinc carboxypeptidase VagYM19_32710 PF18027 Cytosolic carboxypeptidase N-terminal domain VagYM19_32720 PF01389 OmpA-like transmembrane domain VagYM19_32720 PF00691 OmpA family VagYM19_32730 PF03466 LysR substrate binding domain VagYM19_32730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_32750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_32750 PF03466 LysR substrate binding domain VagYM19_32770 PF00854 POT family VagYM19_32780 PF03315 Serine dehydratase beta chain VagYM19_32780 PF03313 Serine dehydratase alpha chain VagYM19_32820 PF00133 tRNA synthetases class I (I, L, M and V) VagYM19_32820 PF08264 Anticodon-binding domain of tRNA VagYM19_32830 PF01464 Transglycosylase SLT domain VagYM19_32870 PF00460 Flagella basal body rod protein VagYM19_32880 PF00460 Flagella basal body rod protein VagYM19_32880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_32890 PF13861 FlgD Tudor-like domain VagYM19_32890 PF13860 FlgD Ig-like domain VagYM19_32890 PF03963 Flagellar hook capping protein - N-terminal region VagYM19_32900 PF07559 Flagellar basal body protein FlaE VagYM19_32900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_32900 PF00460 Flagella basal body rod protein VagYM19_32910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_32910 PF00460 Flagella basal body rod protein VagYM19_32920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_32920 PF00460 Flagella basal body rod protein VagYM19_32930 PF02107 Flagellar L-ring protein VagYM19_32940 PF02119 Flagellar P-ring protein VagYM19_32950 PF10135 Rod binding protein VagYM19_32950 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VagYM19_32960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM19_32960 PF00460 Flagella basal body rod protein VagYM19_32970 PF00669 Bacterial flagellin N-terminal helical region VagYM19_33010 PF01070 FMN-dependent dehydrogenase VagYM19_33040 PF00581 Rhodanese-like domain VagYM19_33050 PF00166 Chaperonin 10 Kd subunit VagYM19_33060 PF00118 TCP-1/cpn60 chaperonin family VagYM19_33090 PF01810 LysE type translocator VagYM19_33100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_33100 PF03466 LysR substrate binding domain VagYM19_33130 PF00440 Bacterial regulatory proteins, tetR family VagYM19_33130 PF08359 YsiA-like protein, C-terminal region VagYM19_33140 PF12833 Helix-turn-helix domain VagYM19_33150 PF06751 Ethanolamine ammonia lyase large subunit (EutB) VagYM19_33160 PF05985 Ethanolamine ammonia-lyase light chain (EutC) VagYM19_33170 PF13520 Amino acid permease VagYM19_33180 PF03060 Nitronate monooxygenase VagYM19_33190 PF17678 Glycosyl hydrolase family 92 N-terminal domain VagYM19_33190 PF07971 Glycosyl hydrolase family 92 VagYM19_33200 PF17678 Glycosyl hydrolase family 92 N-terminal domain VagYM19_33200 PF07971 Glycosyl hydrolase family 92 VagYM19_33220 PF17678 Glycosyl hydrolase family 92 N-terminal domain VagYM19_33220 PF07971 Glycosyl hydrolase family 92 VagYM19_33230 PF07971 Glycosyl hydrolase family 92 VagYM19_33230 PF17678 Glycosyl hydrolase family 92 N-terminal domain VagYM19_33260 PF01625 Peptide methionine sulfoxide reductase VagYM19_33260 PF01641 SelR domain VagYM19_33270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM19_33280 PF00455 DeoR C terminal sensor domain VagYM19_33280 PF08220 DeoR-like helix-turn-helix domain VagYM19_33300 PF00857 Isochorismatase family VagYM19_33320 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VagYM19_33320 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VagYM19_33370 PF03466 LysR substrate binding domain VagYM19_33370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_33400 PF06629 MltA-interacting protein MipA VagYM19_33410 PF17185 NlpE C-terminal OB domain VagYM19_33410 PF04170 NlpE N-terminal domain VagYM19_33420 PF00005 ABC transporter VagYM19_33420 PF00571 CBS domain VagYM19_33430 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_33440 PF02001 Protein of unknown function DUF134 VagYM19_33490 PF14492 Elongation Factor G, domain II VagYM19_33490 PF00679 Elongation factor G C-terminus VagYM19_33490 PF03764 Elongation factor G, domain IV VagYM19_33490 PF00009 Elongation factor Tu GTP binding domain VagYM19_33490 PF03144 Elongation factor Tu domain 2 VagYM19_33500 PF13378 Enolase C-terminal domain-like VagYM19_33500 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VagYM19_33520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_33520 PF03466 LysR substrate binding domain VagYM19_33540 PF09278 MerR, DNA binding VagYM19_33540 PF00376 MerR family regulatory protein VagYM19_33590 PF13091 PLD-like domain VagYM19_33610 PF00873 AcrB/AcrD/AcrF family VagYM19_33660 PF08402 TOBE domain VagYM19_33660 PF00005 ABC transporter VagYM19_33710 PF07702 UTRA domain VagYM19_33710 PF00392 Bacterial regulatory proteins, gntR family VagYM19_33720 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM19_33740 PF02837 Glycosyl hydrolases family 2, sugar binding domain VagYM19_33740 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VagYM19_33740 PF00703 Glycosyl hydrolases family 2 VagYM19_33740 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VagYM19_33770 PF00873 AcrB/AcrD/AcrF family VagYM19_33780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_33790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_33790 PF03466 LysR substrate binding domain VagYM19_33810 PF00579 tRNA synthetases class I (W and Y) VagYM19_33820 PF00072 Response regulator receiver domain VagYM19_33820 PF00196 Bacterial regulatory proteins, luxR family VagYM19_33840 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VagYM19_33840 PF02896 PEP-utilising enzyme, TIM barrel domain VagYM19_33840 PF00391 PEP-utilising enzyme, mobile domain VagYM19_33850 PF03618 Kinase/pyrophosphorylase VagYM19_33860 PF00710 Asparaginase, N-terminal VagYM19_33860 PF17763 Glutaminase/Asparaginase C-terminal domain VagYM19_33880 PF03466 LysR substrate binding domain VagYM19_33880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_33900 PF01810 LysE type translocator VagYM19_33910 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VagYM19_33930 PF02423 Ornithine cyclodeaminase/mu-crystallin family VagYM19_33940 PF00291 Pyridoxal-phosphate dependent enzyme VagYM19_33950 PF00202 Aminotransferase class-III VagYM19_33960 PF00171 Aldehyde dehydrogenase family VagYM19_33970 PF01037 Lrp/AsnC ligand binding domain VagYM19_33980 PF03480 Bacterial extracellular solute-binding protein, family 7 VagYM19_33990 PF03480 Bacterial extracellular solute-binding protein, family 7 VagYM19_34000 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VagYM19_34010 PF00557 Metallopeptidase family M24 VagYM19_34010 PF01321 Creatinase/Prolidase N-terminal domain VagYM19_34020 PF00392 Bacterial regulatory proteins, gntR family VagYM19_34020 PF00155 Aminotransferase class I and II VagYM19_34030 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VagYM19_34040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VagYM19_34050 PF12833 Helix-turn-helix domain VagYM19_34080 PF00107 Zinc-binding dehydrogenase VagYM19_34080 PF08240 Alcohol dehydrogenase GroES-like domain VagYM19_34090 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM19_34110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_34110 PF03466 LysR substrate binding domain VagYM19_34120 PF03466 LysR substrate binding domain VagYM19_34120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_34140 PF00270 DEAD/DEAH box helicase VagYM19_34140 PF00271 Helicase conserved C-terminal domain VagYM19_34180 PF00155 Aminotransferase class I and II VagYM19_34190 PF01497 Periplasmic binding protein VagYM19_34190 PF12833 Helix-turn-helix domain VagYM19_34310 PF02264 LamB porin VagYM19_34310 PF11471 Maltoporin periplasmic N-terminal extension VagYM19_34320 PF00356 Bacterial regulatory proteins, lacI family VagYM19_34330 PF02378 Phosphotransferase system, EIIC VagYM19_34330 PF00367 phosphotransferase system, EIIB VagYM19_34340 PF00294 pfkB family carbohydrate kinase VagYM19_34350 PF00251 Glycosyl hydrolases family 32 N-terminal domain VagYM19_34350 PF08244 Glycosyl hydrolases family 32 C terminal VagYM19_34360 PF02798 Glutathione S-transferase, N-terminal domain VagYM19_34380 PF07943 Penicillin-binding protein 5, C-terminal domain VagYM19_34380 PF00768 D-alanyl-D-alanine carboxypeptidase VagYM19_34410 PF08534 Redoxin VagYM19_34410 PF00462 Glutaredoxin VagYM19_34420 PF00962 Adenosine/AMP deaminase VagYM19_34430 PF00962 Adenosine/AMP deaminase VagYM19_34460 PF00313 'Cold-shock' DNA-binding domain VagYM19_34470 PF05726 Pirin C-terminal cupin domain VagYM19_34470 PF02678 Pirin VagYM19_34480 PF01734 Patatin-like phospholipase VagYM19_34520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VagYM19_34530 PF08019 Phosphoethanolamine transferase EptA/EptB VagYM19_34530 PF00884 Sulfatase VagYM19_34540 PF01219 Prokaryotic diacylglycerol kinase VagYM19_34560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_34560 PF16527 Two-component sensor protein CpxA, periplasmic domain VagYM19_34560 PF00672 HAMP domain VagYM19_34560 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_34570 PF00486 Transcriptional regulatory protein, C terminal VagYM19_34570 PF00072 Response regulator receiver domain VagYM19_34600 PF01323 DSBA-like thioredoxin domain VagYM19_34630 PF00255 Glutathione peroxidase VagYM19_34640 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VagYM19_34660 PF07690 Major Facilitator Superfamily VagYM19_34680 PF01966 HD domain VagYM19_34690 PF07969 Amidohydrolase family VagYM19_34700 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VagYM19_34710 PF00571 CBS domain VagYM19_34710 PF03448 MgtE intracellular N domain VagYM19_34710 PF01769 Divalent cation transporter VagYM19_34720 PF03109 ABC1 family VagYM19_34730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_34730 PF00529 HlyD membrane-fusion protein of T1SS VagYM19_34780 PF00486 Transcriptional regulatory protein, C terminal VagYM19_34780 PF00072 Response regulator receiver domain VagYM19_34790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_34790 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_34790 PF00672 HAMP domain VagYM19_34790 PF16527 Two-component sensor protein CpxA, periplasmic domain VagYM19_34810 PF00392 Bacterial regulatory proteins, gntR family VagYM19_34810 PF00155 Aminotransferase class I and II VagYM19_34820 PF13520 Amino acid permease VagYM19_34840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_34840 PF03466 LysR substrate binding domain VagYM19_34880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VagYM19_34880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VagYM19_34890 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VagYM19_34890 PF00072 Response regulator receiver domain VagYM19_34890 PF01627 Hpt domain VagYM19_34890 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_34890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_34890 PF00672 HAMP domain VagYM19_34900 PF01554 MatE VagYM19_34910 PF04363 Protein of unknown function (DUF496) VagYM19_34930 PF04337 Protein of unknown function, DUF480 VagYM19_34940 PF01541 GIY-YIG catalytic domain VagYM19_34950 PF13407 Periplasmic binding protein domain VagYM19_34960 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_34960 PF09308 LuxQ, periplasmic VagYM19_34960 PF00072 Response regulator receiver domain VagYM19_34960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_34980 PF00529 HlyD membrane-fusion protein of T1SS VagYM19_34980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_35020 PF01037 Lrp/AsnC ligand binding domain VagYM19_35070 PF07549 SecD/SecF GG Motif VagYM19_35070 PF02355 Protein export membrane protein VagYM19_35070 PF13721 SecD export protein N-terminal TM region VagYM19_35080 PF02355 Protein export membrane protein VagYM19_35080 PF07549 SecD/SecF GG Motif VagYM19_35100 PF01810 LysE type translocator VagYM19_35110 PF00106 short chain dehydrogenase VagYM19_35120 PF00108 Thiolase, N-terminal domain VagYM19_35120 PF02803 Thiolase, C-terminal domain VagYM19_35140 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VagYM19_35160 PF03264 NapC/NirT cytochrome c family, N-terminal region VagYM19_35170 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VagYM19_35180 PF00384 Molybdopterin oxidoreductase VagYM19_35180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM19_35180 PF01568 Molydopterin dinucleotide binding domain VagYM19_35200 PF13187 4Fe-4S dicluster domain VagYM19_35200 PF12838 4Fe-4S dicluster domain VagYM19_35210 PF00672 HAMP domain VagYM19_35210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_35210 PF07730 Histidine kinase VagYM19_35210 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VagYM19_35220 PF00196 Bacterial regulatory proteins, luxR family VagYM19_35220 PF00072 Response regulator receiver domain VagYM19_35250 PF01546 Peptidase family M20/M25/M40 VagYM19_35250 PF07687 Peptidase dimerisation domain VagYM19_35260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM19_35270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_35280 PF00873 AcrB/AcrD/AcrF family VagYM19_35290 PF00672 HAMP domain VagYM19_35290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_35290 PF17200 Single Cache domain 2 VagYM19_35300 PF00472 RF-1 domain VagYM19_35310 PF13419 Haloacid dehalogenase-like hydrolase VagYM19_35320 PF01389 OmpA-like transmembrane domain VagYM19_35320 PF00691 OmpA family VagYM19_35330 PF00793 DAHP synthetase I family VagYM19_35340 PF07690 Major Facilitator Superfamily VagYM19_35350 PF08447 PAS fold VagYM19_35350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_35360 PF00456 Transketolase, thiamine diphosphate binding domain VagYM19_35360 PF02780 Transketolase, C-terminal domain VagYM19_35360 PF02779 Transketolase, pyrimidine binding domain VagYM19_35370 PF00923 Transaldolase/Fructose-6-phosphate aldolase VagYM19_35390 PF08329 Chitinase A, N-terminal domain VagYM19_35390 PF00704 Glycosyl hydrolases family 18 VagYM19_35400 PF03707 Bacterial signalling protein N terminal repeat VagYM19_35400 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_35400 PF00563 EAL domain VagYM19_35410 PF00581 Rhodanese-like domain VagYM19_35450 PF00899 ThiF family VagYM19_35460 PF03453 MoeA N-terminal region (domain I and II) VagYM19_35460 PF00994 Probable molybdopterin binding domain VagYM19_35460 PF03454 MoeA C-terminal region (domain IV) VagYM19_35470 PF01227 GTP cyclohydrolase I VagYM19_35480 PF01566 Natural resistance-associated macrophage protein VagYM19_35500 PF00654 Voltage gated chloride channel VagYM19_35530 PF00248 Aldo/keto reductase family VagYM19_35540 PF00072 Response regulator receiver domain VagYM19_35560 PF01256 Carbohydrate kinase VagYM19_35560 PF03853 YjeF-related protein N-terminus VagYM19_35570 PF00478 IMP dehydrogenase / GMP reductase domain VagYM19_35580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM19_35590 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VagYM19_35590 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VagYM19_35590 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VagYM19_35600 PF03466 LysR substrate binding domain VagYM19_35600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_35610 PF01551 Peptidase family M23 VagYM19_35610 PF01476 LysM domain VagYM19_35610 PF08525 Opacity-associated protein A N-terminal motif VagYM19_35670 PF00158 Sigma-54 interaction domain VagYM19_35670 PF02954 Bacterial regulatory protein, Fis family VagYM19_35670 PF00072 Response regulator receiver domain VagYM19_35680 PF07724 AAA domain (Cdc48 subfamily) VagYM19_35680 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM19_35680 PF17871 AAA lid domain VagYM19_35680 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_35690 PF05638 Type VI secretion system effector, Hcp VagYM19_35700 PF04717 Type VI secretion system, phage-baseplate injector VagYM19_35750 PF00069 Protein kinase domain VagYM19_35820 PF01037 Lrp/AsnC ligand binding domain VagYM19_35950 PF02129 X-Pro dipeptidyl-peptidase (S15 family) VagYM19_35960 PF07690 Major Facilitator Superfamily VagYM19_35980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_35980 PF03466 LysR substrate binding domain VagYM19_35990 PF00106 short chain dehydrogenase VagYM19_36000 PF00582 Universal stress protein family VagYM19_36020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VagYM19_36020 PF00361 Proton-conducting membrane transporter VagYM19_36020 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter VagYM19_36020 PF13244 Domain of unknown function (DUF4040) VagYM19_36060 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VagYM19_36070 PF03334 Na+/H+ antiporter subunit VagYM19_36080 PF13193 AMP-binding enzyme C-terminal domain VagYM19_36080 PF00501 AMP-binding enzyme VagYM19_36090 PF01012 Electron transfer flavoprotein domain VagYM19_36090 PF00766 Electron transfer flavoprotein FAD-binding domain VagYM19_36100 PF01012 Electron transfer flavoprotein domain VagYM19_36120 PF01348 Type II intron maturase VagYM19_36120 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VagYM19_36130 PF12399 Branched-chain amino acid ATP-binding cassette transporter VagYM19_36130 PF00005 ABC transporter VagYM19_36180 PF00005 ABC transporter VagYM19_36190 PF14535 AMP-binding enzyme C-terminal domain VagYM19_36190 PF00501 AMP-binding enzyme VagYM19_36210 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM19_36220 PF00106 short chain dehydrogenase VagYM19_36230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VagYM19_36230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM19_36230 PF00205 Thiamine pyrophosphate enzyme, central domain VagYM19_36240 PF03306 Alpha-acetolactate decarboxylase VagYM19_36250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_36250 PF03466 LysR substrate binding domain VagYM19_36280 PF13195 Protein of unknown function (DUF4011) VagYM19_36280 PF13086 AAA domain VagYM19_36280 PF13087 AAA domain VagYM19_36280 PF13087 AAA domain VagYM19_36280 PF13195 Protein of unknown function (DUF4011) VagYM19_36280 PF13086 AAA domain VagYM19_36300 PF02567 Phenazine biosynthesis-like protein VagYM19_36320 PF02322 Cytochrome bd terminal oxidase subunit II VagYM19_36330 PF01654 Cytochrome bd terminal oxidase subunit I VagYM19_36340 PF00155 Aminotransferase class I and II VagYM19_36340 PF00392 Bacterial regulatory proteins, gntR family VagYM19_36380 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_36380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_36380 PF01627 Hpt domain VagYM19_36380 PF00072 Response regulator receiver domain VagYM19_36380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VagYM19_36380 PF00672 HAMP domain VagYM19_36390 PF00682 HMGL-like VagYM19_36400 PF18140 Propionyl-coenzyme A carboxylase BT domain VagYM19_36400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VagYM19_36400 PF02785 Biotin carboxylase C-terminal domain VagYM19_36400 PF00289 Biotin carboxylase, N-terminal domain VagYM19_36400 PF00364 Biotin-requiring enzyme VagYM19_36410 PF00378 Enoyl-CoA hydratase/isomerase VagYM19_36420 PF01039 Carboxyl transferase domain VagYM19_36430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM19_36430 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM19_36430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM19_36440 PF00376 MerR family regulatory protein VagYM19_36440 PF09278 MerR, DNA binding VagYM19_36450 PF00108 Thiolase, N-terminal domain VagYM19_36450 PF02803 Thiolase, C-terminal domain VagYM19_36460 PF00171 Aldehyde dehydrogenase family VagYM19_36470 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM19_36470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM19_36470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM19_36480 PF00378 Enoyl-CoA hydratase/isomerase VagYM19_36500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VagYM19_36500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VagYM19_36520 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_36520 PF00072 Response regulator receiver domain VagYM19_36530 PF13977 BetI-type transcriptional repressor, C-terminal VagYM19_36530 PF00440 Bacterial regulatory proteins, tetR family VagYM19_36540 PF00171 Aldehyde dehydrogenase family VagYM19_36550 PF05199 GMC oxidoreductase VagYM19_36550 PF00732 GMC oxidoreductase VagYM19_36560 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VagYM19_36570 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_36580 PF00005 ABC transporter VagYM19_36580 PF00571 CBS domain VagYM19_36590 PF00881 Nitroreductase family VagYM19_36610 PF01145 SPFH domain / Band 7 family VagYM19_36610 PF16200 C-terminal region of band_7 VagYM19_36640 PF00563 EAL domain VagYM19_36640 PF03707 Bacterial signalling protein N terminal repeat VagYM19_36640 PF13188 PAS domain VagYM19_36640 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_36660 PF00034 Cytochrome c VagYM19_36660 PF03150 Di-haem cytochrome c peroxidase VagYM19_36670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_36670 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_36670 PF00072 Response regulator receiver domain VagYM19_36670 PF09308 LuxQ, periplasmic VagYM19_36690 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VagYM19_36690 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain VagYM19_36710 PF04116 Fatty acid hydroxylase superfamily VagYM19_36780 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_36780 PF00563 EAL domain VagYM19_36790 PF05025 RbsD / FucU transport protein family VagYM19_36800 PF00005 ABC transporter VagYM19_36810 PF02653 Branched-chain amino acid transport system / permease component VagYM19_36820 PF13407 Periplasmic binding protein domain VagYM19_36830 PF00294 pfkB family carbohydrate kinase VagYM19_36840 PF00356 Bacterial regulatory proteins, lacI family VagYM19_36860 PF04973 Nicotinamide mononucleotide transporter VagYM19_36870 PF01048 Phosphorylase superfamily VagYM19_36890 PF01497 Periplasmic binding protein VagYM19_36900 PF01032 FecCD transport family VagYM19_36910 PF01032 FecCD transport family VagYM19_36920 PF00005 ABC transporter VagYM19_36930 PF13411 MerR HTH family regulatory protein VagYM19_36940 PF12833 Helix-turn-helix domain VagYM19_36950 PF07715 TonB-dependent Receptor Plug Domain VagYM19_36950 PF00593 TonB dependent receptor VagYM19_37010 PF12805 FUSC-like inner membrane protein yccS VagYM19_37020 PF00580 UvrD/REP helicase N-terminal domain VagYM19_37020 PF12462 DNA helicase IV / RNA helicase N terminal VagYM19_37020 PF13361 UvrD-like helicase C-terminal domain VagYM19_37030 PF02142 MGS-like domain VagYM19_37040 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VagYM19_37050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_37050 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_37050 PF01627 Hpt domain VagYM19_37050 PF00072 Response regulator receiver domain VagYM19_37050 PF00672 HAMP domain VagYM19_37080 PF00072 Response regulator receiver domain VagYM19_37080 PF00486 Transcriptional regulatory protein, C terminal VagYM19_37090 PF00884 Sulfatase VagYM19_37100 PF03466 LysR substrate binding domain VagYM19_37100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_37110 PF00884 Sulfatase VagYM19_37110 PF16385 Domain of unknown function VagYM19_37120 PF04055 Radical SAM superfamily VagYM19_37120 PF13186 Iron-sulfur cluster-binding domain VagYM19_37130 PF17863 AAA lid domain VagYM19_37130 PF07726 ATPase family associated with various cellular activities (AAA) VagYM19_37160 PF00092 von Willebrand factor type A domain VagYM19_37190 PF01872 RibD C-terminal domain VagYM19_37190 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM19_37200 PF03466 LysR substrate binding domain VagYM19_37200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_37210 PF00781 Diacylglycerol kinase catalytic domain VagYM19_37220 PF04076 Bacterial OB fold (BOF) protein VagYM19_37240 PF18081 Fanconi anemia-associated nuclease SAP domain VagYM19_37240 PF08774 VRR-NUC domain VagYM19_37280 PF01435 Peptidase family M48 VagYM19_37290 PF04011 LemA family VagYM19_37300 PF03606 C4-dicarboxylate anaerobic carrier VagYM19_37320 PF00814 Glycoprotease family VagYM19_37320 PF00583 Acetyltransferase (GNAT) family VagYM19_37340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_37340 PF00072 Response regulator receiver domain VagYM19_37350 PF00155 Aminotransferase class I and II VagYM19_37360 PF01926 50S ribosome-binding GTPase VagYM19_37370 PF03707 Bacterial signalling protein N terminal repeat VagYM19_37370 PF00563 EAL domain VagYM19_37370 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_37380 PF08448 PAS fold VagYM19_37380 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_37400 PF00072 Response regulator receiver domain VagYM19_37400 PF00196 Bacterial regulatory proteins, luxR family VagYM19_37410 PF01584 CheW-like domain VagYM19_37410 PF00072 Response regulator receiver domain VagYM19_37440 PF00892 EamA-like transporter family VagYM19_37480 PF01447 Thermolysin metallopeptidase, catalytic domain VagYM19_37480 PF02868 Thermolysin metallopeptidase, alpha-helical domain VagYM19_37480 PF03413 Peptidase propeptide and YPEB domain VagYM19_37480 PF04151 Bacterial pre-peptidase C-terminal domain VagYM19_37480 PF07504 Fungalysin/Thermolysin Propeptide Motif VagYM19_37490 PF00893 Small Multidrug Resistance protein VagYM19_37500 PF00892 EamA-like transporter family VagYM19_37530 PF00171 Aldehyde dehydrogenase family VagYM19_37540 PF00939 Sodium:sulfate symporter transmembrane region VagYM19_37550 PF17203 Single cache domain 3 VagYM19_37550 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VagYM19_37550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_37550 PF00989 PAS fold VagYM19_37560 PF12431 Transcriptional regulator VagYM19_37560 PF00072 Response regulator receiver domain VagYM19_37580 PF13187 4Fe-4S dicluster domain VagYM19_37580 PF01645 Conserved region in glutamate synthase VagYM19_37590 PF00141 Peroxidase VagYM19_37600 PF09722 Protein of unknown function (DUF2384) VagYM19_37620 PF01757 Acyltransferase family VagYM19_37640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM19_37650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM19_37690 PF00571 CBS domain VagYM19_37690 PF01769 Divalent cation transporter VagYM19_37690 PF03448 MgtE intracellular N domain VagYM19_37730 PF01327 Polypeptide deformylase VagYM19_37740 PF00376 MerR family regulatory protein VagYM19_37740 PF09278 MerR, DNA binding VagYM19_37760 PF02253 Phospholipase A1 VagYM19_37800 PF00005 ABC transporter VagYM19_37800 PF00664 ABC transporter transmembrane region VagYM19_37810 PF02811 PHP domain VagYM19_37810 PF00929 Exonuclease VagYM19_37810 PF07733 Bacterial DNA polymerase III alpha NTPase domain VagYM19_37810 PF14579 Helix-hairpin-helix motif VagYM19_37810 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VagYM19_37810 PF11490 DNA polymerase III polC-type N-terminus II VagYM19_37860 PF12833 Helix-turn-helix domain VagYM19_37870 PF02627 Carboxymuconolactone decarboxylase family VagYM19_37880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM19_37890 PF00665 Integrase core domain VagYM19_37900 PF01527 Transposase VagYM19_37920 PF00672 HAMP domain VagYM19_37920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_37920 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_37930 PF14532 Sigma-54 interaction domain VagYM19_37930 PF00072 Response regulator receiver domain VagYM19_37930 PF02954 Bacterial regulatory protein, Fis family VagYM19_37950 PF00465 Iron-containing alcohol dehydrogenase VagYM19_37960 PF12833 Helix-turn-helix domain VagYM19_37960 PF06719 AraC-type transcriptional regulator N-terminus VagYM19_37970 PF06483 Chitinase C VagYM19_37970 PF00704 Glycosyl hydrolases family 18 VagYM19_37980 PF00483 Nucleotidyl transferase VagYM19_37990 PF01268 Formate--tetrahydrofolate ligase VagYM19_38000 PF00294 pfkB family carbohydrate kinase VagYM19_38040 PF13419 Haloacid dehalogenase-like hydrolase VagYM19_38050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_38070 PF04336 Acyl carrier protein phosphodiesterase VagYM19_38080 PF00271 Helicase conserved C-terminal domain VagYM19_38080 PF00270 DEAD/DEAH box helicase VagYM19_38090 PF00563 EAL domain VagYM19_38090 PF12792 CSS motif domain associated with EAL VagYM19_38120 PF01292 Prokaryotic cytochrome b561 VagYM19_38130 PF04264 YceI-like domain VagYM19_38140 PF01226 Formate/nitrite transporter VagYM19_38150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_38150 PF03466 LysR substrate binding domain VagYM19_38160 PF06496 Protein of unknown function (DUF1097) VagYM19_38170 PF11398 Protein of unknown function (DUF2813) VagYM19_38180 PF00149 Calcineurin-like phosphoesterase VagYM19_38180 PF02872 5'-nucleotidase, C-terminal domain VagYM19_38200 PF03741 Integral membrane protein TerC family VagYM19_38240 PF12262 Bacterial virulence factor lipase N-terminal VagYM19_38250 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM19_38280 PF03061 Thioesterase superfamily VagYM19_38300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_38300 PF12793 Sugar transport-related sRNA regulator N-term VagYM19_38350 PF01556 DnaJ C terminal domain VagYM19_38350 PF00226 DnaJ domain VagYM19_38350 PF00684 DnaJ central domain VagYM19_38370 PF00563 EAL domain VagYM19_38370 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_38370 PF00498 FHA domain VagYM19_38380 PF12241 Trans-2-enoyl-CoA reductase catalytic region VagYM19_38380 PF07055 Enoyl reductase FAD binding domain VagYM19_38380 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VagYM19_38390 PF13472 GDSL-like Lipase/Acylhydrolase family VagYM19_38400 PF00005 ABC transporter VagYM19_38430 PF02626 Carboxyltransferase domain, subdomain A and B VagYM19_38440 PF02682 Carboxyltransferase domain, subdomain C and D VagYM19_38450 PF03746 LamB/YcsF family VagYM19_38460 PF00563 EAL domain VagYM19_38460 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_38460 PF05231 MASE1 VagYM19_38460 PF08447 PAS fold VagYM19_38460 PF08448 PAS fold VagYM19_38460 PF13426 PAS domain VagYM19_38470 PF16363 GDP-mannose 4,6 dehydratase VagYM19_38480 PF04886 PT repeat VagYM19_38480 PF00593 TonB dependent receptor VagYM19_38480 PF07715 TonB-dependent Receptor Plug Domain VagYM19_38490 PF03466 LysR substrate binding domain VagYM19_38490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_38500 PF00583 Acetyltransferase (GNAT) family VagYM19_38500 PF13607 Succinyl-CoA ligase like flavodoxin domain VagYM19_38500 PF13380 CoA binding domain VagYM19_38510 PF05036 Sporulation related domain VagYM19_38520 PF01820 D-ala D-ala ligase N-terminus VagYM19_38520 PF07478 D-ala D-ala ligase C-terminus VagYM19_38540 PF01253 Translation initiation factor SUI1 VagYM19_38560 PF05707 Zonular occludens toxin (Zot) VagYM19_38660 PF05707 Zonular occludens toxin (Zot) VagYM19_38780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_38780 PF03466 LysR substrate binding domain VagYM19_38800 PF00582 Universal stress protein family VagYM19_38810 PF03701 Uncharacterised protein family (UPF0181) VagYM19_38840 PF00486 Transcriptional regulatory protein, C terminal VagYM19_38840 PF00072 Response regulator receiver domain VagYM19_38860 PF02233 NAD(P) transhydrogenase beta subunit VagYM19_38870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VagYM19_38870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VagYM19_38870 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VagYM19_38900 PF00072 Response regulator receiver domain VagYM19_38900 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_38920 PF00360 Phytochrome region VagYM19_38920 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_38920 PF01590 GAF domain VagYM19_38920 PF00563 EAL domain VagYM19_38940 PF03459 TOBE domain VagYM19_38940 PF00005 ABC transporter VagYM19_38950 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_38970 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VagYM19_38970 PF07685 CobB/CobQ-like glutamine amidotransferase domain VagYM19_39000 PF18030 RimK PreATP-grasp domain VagYM19_39000 PF08443 RimK-like ATP-grasp domain VagYM19_39010 PF00155 Aminotransferase class I and II VagYM19_39020 PF12852 Cupin VagYM19_39020 PF12833 Helix-turn-helix domain VagYM19_39030 PF01554 MatE VagYM19_39050 PF13597 Anaerobic ribonucleoside-triphosphate reductase VagYM19_39050 PF03477 ATP cone domain VagYM19_39070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_39080 PF00873 AcrB/AcrD/AcrF family VagYM19_39100 PF04143 Sulphur transport VagYM19_39130 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_39130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM19_39140 PF01177 Asp/Glu/Hydantoin racemase VagYM19_39150 PF02567 Phenazine biosynthesis-like protein VagYM19_39170 PF00384 Molybdopterin oxidoreductase VagYM19_39180 PF03466 LysR substrate binding domain VagYM19_39180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_39190 PF02634 FdhD/NarQ family VagYM19_39200 PF07690 Major Facilitator Superfamily VagYM19_39210 PF00072 Response regulator receiver domain VagYM19_39210 PF00196 Bacterial regulatory proteins, luxR family VagYM19_39220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_39220 PF07730 Histidine kinase VagYM19_39220 PF05231 MASE1 VagYM19_39230 PF07690 Major Facilitator Superfamily VagYM19_39240 PF01238 Phosphomannose isomerase type I VagYM19_39280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VagYM19_39280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM19_39290 PF00085 Thioredoxin VagYM19_39300 PF07690 Major Facilitator Superfamily VagYM19_39310 PF11756 Nitrous oxide-stimulated promoter VagYM19_39340 PF07715 TonB-dependent Receptor Plug Domain VagYM19_39340 PF00593 TonB dependent receptor VagYM19_39360 PF03605 Anaerobic c4-dicarboxylate membrane transporter VagYM19_39390 PF10414 Sirohaem synthase dimerisation region VagYM19_39390 PF14824 Sirohaem biosynthesis protein central VagYM19_39390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM19_39400 PF01226 Formate/nitrite transporter VagYM19_39410 PF13806 Rieske-like [2Fe-2S] domain VagYM19_39420 PF04324 BFD-like [2Fe-2S] binding domain VagYM19_39420 PF18267 Rubredoxin NAD+ reductase C-terminal domain VagYM19_39420 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_39420 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VagYM19_39420 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VagYM19_39430 PF01272 Transcription elongation factor, GreA/GreB, C-term VagYM19_39430 PF14760 Rnk N-terminus VagYM19_39440 PF00563 EAL domain VagYM19_39440 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_39440 PF13426 PAS domain VagYM19_39520 PF09154 Domain of unknown function (DUF1939) VagYM19_39520 PF00128 Alpha amylase, catalytic domain VagYM19_39530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_39530 PF00672 HAMP domain VagYM19_39540 PF01168 Alanine racemase, N-terminal domain VagYM19_39540 PF00842 Alanine racemase, C-terminal domain VagYM19_39570 PF03466 LysR substrate binding domain VagYM19_39570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_39580 PF01168 Alanine racemase, N-terminal domain VagYM19_39580 PF14031 Putative serine dehydratase domain VagYM19_39590 PF02423 Ornithine cyclodeaminase/mu-crystallin family VagYM19_39610 PF01565 FAD binding domain VagYM19_39610 PF09330 D-lactate dehydrogenase, membrane binding VagYM19_39620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_39620 PF03466 LysR substrate binding domain VagYM19_39630 PF05762 VWA domain containing CoxE-like protein VagYM19_39640 PF12592 Protein of unknown function (DUF3763) VagYM19_39640 PF17868 AAA lid domain VagYM19_39640 PF07728 AAA domain (dynein-related subfamily) VagYM19_39660 PF01212 Beta-eliminating lyase VagYM19_39670 PF00034 Cytochrome c VagYM19_39680 PF03606 C4-dicarboxylate anaerobic carrier VagYM19_39700 PF08212 Lipocalin-like domain VagYM19_39720 PF13476 AAA domain VagYM19_39730 PF00149 Calcineurin-like phosphoesterase VagYM19_39730 PF12320 Type 5 capsule protein repressor C-terminal domain VagYM19_39760 PF16671 Actin cross-linking domain VagYM19_39760 PF04717 Type VI secretion system, phage-baseplate injector VagYM19_39780 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM19_39780 PF17871 AAA lid domain VagYM19_39780 PF07724 AAA domain (Cdc48 subfamily) VagYM19_39780 PF00004 ATPase family associated with various cellular activities (AAA) VagYM19_39900 PF13677 Membrane MotB of proton-channel complex MotA/MotB VagYM19_39900 PF00691 OmpA family VagYM19_39940 PF00069 Protein kinase domain VagYM19_39940 PF03793 PASTA domain VagYM19_39980 PF00486 Transcriptional regulatory protein, C terminal VagYM19_39980 PF00072 Response regulator receiver domain VagYM19_40000 PF13417 Glutathione S-transferase, N-terminal domain VagYM19_40000 PF00043 Glutathione S-transferase, C-terminal domain VagYM19_40010 PF08361 MAATS-type transcriptional repressor, C-terminal region VagYM19_40010 PF00440 Bacterial regulatory proteins, tetR family VagYM19_40040 PF04324 BFD-like [2Fe-2S] binding domain VagYM19_40040 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VagYM19_40040 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_40040 PF13806 Rieske-like [2Fe-2S] domain VagYM19_40040 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VagYM19_40040 PF18267 Rubredoxin NAD+ reductase C-terminal domain VagYM19_40050 PF00005 ABC transporter VagYM19_40060 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_40070 PF00005 ABC transporter VagYM19_40080 PF00072 Response regulator receiver domain VagYM19_40080 PF03861 ANTAR domain VagYM19_40090 PF01738 Dienelactone hydrolase family VagYM19_40100 PF02885 Glycosyl transferase family, helical bundle domain VagYM19_40100 PF00591 Glycosyl transferase family, a/b domain VagYM19_40110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM19_40110 PF14824 Sirohaem biosynthesis protein central VagYM19_40110 PF10414 Sirohaem synthase dimerisation region VagYM19_40120 PF00384 Molybdopterin oxidoreductase VagYM19_40120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM19_40120 PF01568 Molydopterin dinucleotide binding domain VagYM19_40140 PF03222 Tryptophan/tyrosine permease family VagYM19_40160 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_40160 PF07694 5TMR of 5TMR-LYT VagYM19_40180 PF00082 Subtilase family VagYM19_40180 PF01483 Proprotein convertase P-domain VagYM19_40220 PF00072 Response regulator receiver domain VagYM19_40220 PF00486 Transcriptional regulatory protein, C terminal VagYM19_40260 PF04314 Copper chaperone PCu(A)C VagYM19_40270 PF00012 Hsp70 protein VagYM19_40300 PF00676 Dehydrogenase E1 component VagYM19_40310 PF02780 Transketolase, C-terminal domain VagYM19_40310 PF02779 Transketolase, pyrimidine binding domain VagYM19_40320 PF02817 e3 binding domain VagYM19_40320 PF00364 Biotin-requiring enzyme VagYM19_40320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VagYM19_40330 PF01012 Electron transfer flavoprotein domain VagYM19_40330 PF00766 Electron transfer flavoprotein FAD-binding domain VagYM19_40370 PF01389 OmpA-like transmembrane domain VagYM19_40370 PF00691 OmpA family VagYM19_40400 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_40410 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_40420 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_40430 PF00005 ABC transporter VagYM19_40490 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM19_40510 PF00171 Aldehyde dehydrogenase family VagYM19_40540 PF08031 Berberine and berberine like VagYM19_40540 PF01565 FAD binding domain VagYM19_40550 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_40550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM19_40570 PF01040 UbiA prenyltransferase family VagYM19_40590 PF00510 Cytochrome c oxidase subunit III VagYM19_40600 PF00115 Cytochrome C and Quinol oxidase polypeptide I VagYM19_40610 PF06481 COX Aromatic Rich Motif VagYM19_40610 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VagYM19_40630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VagYM19_40630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VagYM19_40640 PF00378 Enoyl-CoA hydratase/isomerase VagYM19_40650 PF00378 Enoyl-CoA hydratase/isomerase VagYM19_40660 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM19_40660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM19_40660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM19_40670 PF00171 Aldehyde dehydrogenase family VagYM19_40680 PF00108 Thiolase, N-terminal domain VagYM19_40680 PF02803 Thiolase, C-terminal domain VagYM19_40690 PF09278 MerR, DNA binding VagYM19_40690 PF00376 MerR family regulatory protein VagYM19_40700 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM19_40700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM19_40700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM19_40710 PF01039 Carboxyl transferase domain VagYM19_40720 PF00378 Enoyl-CoA hydratase/isomerase VagYM19_40730 PF00682 HMGL-like VagYM19_40740 PF10063 Uncharacterized integral membrane protein (DUF2301) VagYM19_40760 PF13183 4Fe-4S dicluster domain VagYM19_40760 PF02913 FAD linked oxidases, C-terminal domain VagYM19_40760 PF01565 FAD binding domain VagYM19_40770 PF04909 Amidohydrolase VagYM19_40780 PF00561 alpha/beta hydrolase fold VagYM19_40790 PF12833 Helix-turn-helix domain VagYM19_40790 PF01965 DJ-1/PfpI family VagYM19_40820 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VagYM19_40830 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_40840 PF00571 CBS domain VagYM19_40840 PF00005 ABC transporter VagYM19_40850 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_40860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_40860 PF13426 PAS domain VagYM19_40860 PF08447 PAS fold VagYM19_40870 PF00871 Acetokinase family VagYM19_40880 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_40880 PF03707 Bacterial signalling protein N terminal repeat VagYM19_40880 PF00563 EAL domain VagYM19_40890 PF00271 Helicase conserved C-terminal domain VagYM19_40890 PF00270 DEAD/DEAH box helicase VagYM19_40890 PF03880 DbpA RNA binding domain VagYM19_40900 PF08206 Ribonuclease B OB domain VagYM19_40900 PF00575 S1 RNA binding domain VagYM19_40900 PF00773 RNB domain VagYM19_40910 PF12833 Helix-turn-helix domain VagYM19_40930 PF12849 PBP superfamily domain VagYM19_40940 PF01575 MaoC like domain VagYM19_40950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_40950 PF08447 PAS fold VagYM19_40960 PF00005 ABC transporter VagYM19_40970 PF12792 CSS motif domain associated with EAL VagYM19_40970 PF00563 EAL domain VagYM19_41020 PF00271 Helicase conserved C-terminal domain VagYM19_41020 PF00270 DEAD/DEAH box helicase VagYM19_41030 PF02492 CobW/HypB/UreG, nucleotide-binding domain VagYM19_41030 PF07683 Cobalamin synthesis protein cobW C-terminal domain VagYM19_41050 PF01470 Pyroglutamyl peptidase VagYM19_41070 PF00313 'Cold-shock' DNA-binding domain VagYM19_41080 PF17876 Cold shock domain VagYM19_41080 PF08206 Ribonuclease B OB domain VagYM19_41080 PF00773 RNB domain VagYM19_41080 PF00575 S1 RNA binding domain VagYM19_41080 PF08461 Ribonuclease R winged-helix domain VagYM19_41090 PF00291 Pyridoxal-phosphate dependent enzyme VagYM19_41110 PF09905 DNA-binding protein VF530 VagYM19_41120 PF00270 DEAD/DEAH box helicase VagYM19_41120 PF00271 Helicase conserved C-terminal domain VagYM19_41140 PF01925 Sulfite exporter TauE/SafE VagYM19_41160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_41160 PF03466 LysR substrate binding domain VagYM19_41170 PF00892 EamA-like transporter family VagYM19_41180 PF01276 Orn/Lys/Arg decarboxylase, major domain VagYM19_41180 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VagYM19_41190 PF00857 Isochorismatase family VagYM19_41210 PF00082 Subtilase family VagYM19_41210 PF04151 Bacterial pre-peptidase C-terminal domain VagYM19_41210 PF05922 Peptidase inhibitor I9 VagYM19_41240 PF12843 Putative quorum-sensing-regulated virulence factor VagYM19_41280 PF01329 Pterin 4 alpha carbinolamine dehydratase VagYM19_41290 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VagYM19_41300 PF00501 AMP-binding enzyme VagYM19_41300 PF13193 AMP-binding enzyme C-terminal domain VagYM19_41320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_41320 PF03466 LysR substrate binding domain VagYM19_41340 PF00892 EamA-like transporter family VagYM19_41370 PF00465 Iron-containing alcohol dehydrogenase VagYM19_41380 PF07995 Glucose / Sorbosone dehydrogenase VagYM19_41400 PF00210 Ferritin-like domain VagYM19_41410 PF17200 Single Cache domain 2 VagYM19_41410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_41410 PF00672 HAMP domain VagYM19_41430 PF02687 FtsX-like permease family VagYM19_41430 PF00005 ABC transporter VagYM19_41430 PF12704 MacB-like periplasmic core domain VagYM19_41440 PF00005 ABC transporter VagYM19_41440 PF12704 MacB-like periplasmic core domain VagYM19_41440 PF02687 FtsX-like permease family VagYM19_41470 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_41480 PF03889 Alternative ribosome-rescue factor A VagYM19_41490 PF00313 'Cold-shock' DNA-binding domain VagYM19_41530 PF13488 Glycine zipper VagYM19_41530 PF00691 OmpA family VagYM19_41550 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VagYM19_41550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM19_41560 PF01040 UbiA prenyltransferase family VagYM19_41570 PF02628 Cytochrome oxidase assembly protein VagYM19_41600 PF00510 Cytochrome c oxidase subunit III VagYM19_41610 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VagYM19_41620 PF00115 Cytochrome C and Quinol oxidase polypeptide I VagYM19_41630 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VagYM19_41630 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VagYM19_41640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VagYM19_41640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VagYM19_41640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VagYM19_41640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VagYM19_41660 PF01810 LysE type translocator VagYM19_41670 PF12833 Helix-turn-helix domain VagYM19_41700 PF01557 Fumarylacetoacetate (FAA) hydrolase family VagYM19_41740 PF00892 EamA-like transporter family VagYM19_41750 PF00462 Glutaredoxin VagYM19_41780 PF07690 Major Facilitator Superfamily VagYM19_41790 PF03466 LysR substrate binding domain VagYM19_41790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_41800 PF08447 PAS fold VagYM19_41800 PF00563 EAL domain VagYM19_41800 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_41800 PF08448 PAS fold VagYM19_41810 PF01551 Peptidase family M23 VagYM19_41810 PF01476 LysM domain VagYM19_41810 PF08525 Opacity-associated protein A N-terminal motif VagYM19_41870 PF02743 Cache domain VagYM19_41870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_41870 PF00672 HAMP domain VagYM19_41890 PF03222 Tryptophan/tyrosine permease family VagYM19_41950 PF00107 Zinc-binding dehydrogenase VagYM19_41950 PF08240 Alcohol dehydrogenase GroES-like domain VagYM19_41960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM19_41960 PF02378 Phosphotransferase system, EIIC VagYM19_41970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM19_42000 PF01758 Sodium Bile acid symporter family VagYM19_42020 PF01161 Phosphatidylethanolamine-binding protein VagYM19_42030 PF02567 Phenazine biosynthesis-like protein VagYM19_42040 PF10282 Lactonase, 7-bladed beta-propeller VagYM19_42060 PF00005 ABC transporter VagYM19_42100 PF12838 4Fe-4S dicluster domain VagYM19_42100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM19_42100 PF00384 Molybdopterin oxidoreductase VagYM19_42100 PF01568 Molydopterin dinucleotide binding domain VagYM19_42100 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VagYM19_42140 PF00873 AcrB/AcrD/AcrF family VagYM19_42180 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_42180 PF17151 Periplasmic sensor domain VagYM19_42200 PF13302 Acetyltransferase (GNAT) domain VagYM19_42220 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM19_42230 PF00873 AcrB/AcrD/AcrF family VagYM19_42240 PF13533 Biotin-lipoyl like VagYM19_42270 PF00326 Prolyl oligopeptidase family VagYM19_42270 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VagYM19_42280 PF16326 ABC transporter C-terminal domain VagYM19_42280 PF00005 ABC transporter VagYM19_42280 PF12848 ABC transporter VagYM19_42290 PF00582 Universal stress protein family VagYM19_42300 PF02525 Flavodoxin-like fold VagYM19_42310 PF02254 TrkA-N domain VagYM19_42310 PF00999 Sodium/hydrogen exchanger family VagYM19_42340 PF00128 Alpha amylase, catalytic domain VagYM19_42350 PF13411 MerR HTH family regulatory protein VagYM19_42360 PF02627 Carboxymuconolactone decarboxylase family VagYM19_42380 PF04151 Bacterial pre-peptidase C-terminal domain VagYM19_42380 PF08453 Peptidase family M9 N-terminal VagYM19_42380 PF01752 Collagenase VagYM19_42400 PF17848 Acetyl-coA carboxylase zinc finger domain VagYM19_42400 PF01039 Carboxyl transferase domain VagYM19_42410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_42410 PF03466 LysR substrate binding domain VagYM19_42420 PF02743 Cache domain VagYM19_42420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_42420 PF00672 HAMP domain VagYM19_42440 PF03824 High-affinity nickel-transport protein VagYM19_42450 PF02583 Metal-sensitive transcriptional repressor VagYM19_42490 PF00072 Response regulator receiver domain VagYM19_42490 PF01584 CheW-like domain VagYM19_42510 PF01243 Pyridoxamine 5'-phosphate oxidase VagYM19_42520 PF06228 Haem utilisation ChuX/HutX VagYM19_42530 PF04055 Radical SAM superfamily VagYM19_42540 PF03544 Gram-negative bacterial TonB protein C-terminal VagYM19_42550 PF01618 MotA/TolQ/ExbB proton channel family VagYM19_42560 PF02472 Biopolymer transport protein ExbD/TolR VagYM19_42580 PF01032 FecCD transport family VagYM19_42590 PF00005 ABC transporter VagYM19_42680 PF01467 Cytidylyltransferase-like VagYM19_42690 PF02540 NAD synthase VagYM19_42700 PF03476 MOSC N-terminal beta barrel domain VagYM19_42700 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM19_42700 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM19_42700 PF03476 MOSC N-terminal beta barrel domain VagYM19_42700 PF03473 MOSC domain VagYM19_42700 PF03473 MOSC domain VagYM19_42710 PF01679 Proteolipid membrane potential modulator VagYM19_42720 PF01979 Amidohydrolase family VagYM19_42730 PF05661 Protein of unknown function (DUF808) VagYM19_42790 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_42800 PF14785 Maltose transport system permease protein MalF P2 domain VagYM19_42800 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_42810 PF01547 Bacterial extracellular solute-binding protein VagYM19_42820 PF08402 TOBE domain VagYM19_42820 PF00005 ABC transporter VagYM19_42830 PF02397 Bacterial sugar transferase VagYM19_42860 PF13614 AAA domain VagYM19_42860 PF02706 Chain length determinant protein VagYM19_42860 PF13807 G-rich domain on putative tyrosine kinase VagYM19_42880 PF00534 Glycosyl transferases group 1 VagYM19_42880 PF13439 Glycosyltransferase Family 4 VagYM19_42950 PF00440 Bacterial regulatory proteins, tetR family VagYM19_42950 PF16925 Tetracyclin repressor-like, C-terminal domain VagYM19_42960 PF16884 N-terminal domain of oxidoreductase VagYM19_42960 PF00107 Zinc-binding dehydrogenase VagYM19_42970 PF13417 Glutathione S-transferase, N-terminal domain VagYM19_42980 PF00199 Catalase VagYM19_42980 PF06628 Catalase-related immune-responsive VagYM19_42990 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VagYM19_42990 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VagYM19_43010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM19_43030 PF12833 Helix-turn-helix domain VagYM19_43040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM19_43040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM19_43050 PF01238 Phosphomannose isomerase type I VagYM19_43070 PF13419 Haloacid dehalogenase-like hydrolase VagYM19_43080 PF00127 Copper binding proteins, plastocyanin/azurin family VagYM19_43090 PF02378 Phosphotransferase system, EIIC VagYM19_43110 PF01266 FAD dependent oxidoreductase VagYM19_43120 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_43120 PF18113 Rubredoxin binding C-terminal domain VagYM19_43130 PF00171 Aldehyde dehydrogenase family VagYM19_43140 PF00355 Rieske [2Fe-2S] domain VagYM19_43140 PF00848 Ring hydroxylating alpha subunit (catalytic domain) VagYM19_43150 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM19_43160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_43160 PF03466 LysR substrate binding domain VagYM19_43170 PF02386 Cation transport protein VagYM19_43180 PF02080 TrkA-C domain VagYM19_43180 PF02254 TrkA-N domain VagYM19_43190 PF00072 Response regulator receiver domain VagYM19_43190 PF00486 Transcriptional regulatory protein, C terminal VagYM19_43200 PF13493 Domain of unknown function (DUF4118) VagYM19_43200 PF13493 Domain of unknown function (DUF4118) VagYM19_43200 PF02702 Osmosensitive K+ channel His kinase sensor domain VagYM19_43200 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_43200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_43200 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_43200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_43200 PF02702 Osmosensitive K+ channel His kinase sensor domain VagYM19_43210 PF00005 ABC transporter VagYM19_43210 PF00664 ABC transporter transmembrane region VagYM19_43220 PF07715 TonB-dependent Receptor Plug Domain VagYM19_43220 PF00593 TonB dependent receptor VagYM19_43230 PF00005 ABC transporter VagYM19_43240 PF01497 Periplasmic binding protein VagYM19_43250 PF01032 FecCD transport family VagYM19_43270 PF00529 HlyD membrane-fusion protein of T1SS VagYM19_43280 PF00005 ABC transporter VagYM19_43280 PF00664 ABC transporter transmembrane region VagYM19_43300 PF00196 Bacterial regulatory proteins, luxR family VagYM19_43310 PF00196 Bacterial regulatory proteins, luxR family VagYM19_43330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_43330 PF00672 HAMP domain VagYM19_43330 PF02743 Cache domain VagYM19_43340 PF07726 ATPase family associated with various cellular activities (AAA) VagYM19_43340 PF17863 AAA lid domain VagYM19_43350 PF01882 Protein of unknown function DUF58 VagYM19_43370 PF13519 von Willebrand factor type A domain VagYM19_43380 PF13519 von Willebrand factor type A domain VagYM19_43410 PF00005 ABC transporter VagYM19_43420 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_43430 PF00528 Binding-protein-dependent transport system inner membrane component VagYM19_43440 PF12849 PBP superfamily domain VagYM19_43450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_43450 PF00672 HAMP domain VagYM19_43450 PF12729 Four helix bundle sensory module for signal transduction VagYM19_43490 PF00593 TonB dependent receptor VagYM19_43490 PF07715 TonB-dependent Receptor Plug Domain VagYM19_43500 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VagYM19_43500 PF00326 Prolyl oligopeptidase family VagYM19_43510 PF00270 DEAD/DEAH box helicase VagYM19_43510 PF00271 Helicase conserved C-terminal domain VagYM19_43530 PF01476 LysM domain VagYM19_43530 PF17969 L,D-transpeptidase C-terminal domain VagYM19_43530 PF03734 L,D-transpeptidase catalytic domain VagYM19_43540 PF00875 DNA photolyase VagYM19_43540 PF03441 FAD binding domain of DNA photolyase VagYM19_43550 PF13411 MerR HTH family regulatory protein VagYM19_43560 PF08349 Protein of unknown function (DUF1722) VagYM19_43570 PF01048 Phosphorylase superfamily VagYM19_43600 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_43610 PF11742 Protein of unknown function (DUF3302) VagYM19_43620 PF00529 HlyD membrane-fusion protein of T1SS VagYM19_43620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM19_43630 PF07155 ECF-type riboflavin transporter, S component VagYM19_43640 PF00005 ABC transporter VagYM19_43640 PF12558 ATP-binding cassette cobalt transporter VagYM19_43680 PF13237 4Fe-4S dicluster domain VagYM19_43680 PF12801 4Fe-4S binding domain VagYM19_43690 PF12800 4Fe-4S binding domain VagYM19_43690 PF12838 4Fe-4S dicluster domain VagYM19_43700 PF00583 Acetyltransferase (GNAT) family VagYM19_43730 PF07238 PilZ domain VagYM19_43730 PF12945 Flagellar protein YcgR VagYM19_43740 PF13609 Gram-negative porin VagYM19_43750 PF00672 HAMP domain VagYM19_43750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_43750 PF17200 Single Cache domain 2 VagYM19_43760 PF13654 AAA domain VagYM19_43760 PF05362 Lon protease (S16) C-terminal proteolytic domain VagYM19_43780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM19_43780 PF00005 ABC transporter VagYM19_43790 PF00326 Prolyl oligopeptidase family VagYM19_43790 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VagYM19_43800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_43800 PF03466 LysR substrate binding domain VagYM19_43810 PF02652 L-lactate permease VagYM19_43820 PF01070 FMN-dependent dehydrogenase VagYM19_43840 PF00924 Mechanosensitive ion channel VagYM19_43850 PF00194 Eukaryotic-type carbonic anhydrase VagYM19_43860 PF08240 Alcohol dehydrogenase GroES-like domain VagYM19_43860 PF00107 Zinc-binding dehydrogenase VagYM19_43870 PF00155 Aminotransferase class I and II VagYM19_43880 PF13188 PAS domain VagYM19_43880 PF03707 Bacterial signalling protein N terminal repeat VagYM19_43880 PF00990 Diguanylate cyclase, GGDEF domain VagYM19_43880 PF00563 EAL domain VagYM19_43890 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM19_43910 PF00080 Copper/zinc superoxide dismutase (SODC) VagYM19_43920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_43920 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_43930 PF00486 Transcriptional regulatory protein, C terminal VagYM19_43930 PF00072 Response regulator receiver domain VagYM19_43970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_43970 PF03466 LysR substrate binding domain VagYM19_43980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM19_44040 PF03466 LysR substrate binding domain VagYM19_44040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_44070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM19_44070 PF18269 T3SS EscN ATPase C-terminal domain VagYM19_44090 PF14842 FliG N-terminal domain VagYM19_44090 PF14841 FliG middle domain VagYM19_44090 PF01706 FliG C-terminal domain VagYM19_44100 PF08345 Flagellar M-ring protein C-terminal VagYM19_44100 PF01514 Secretory protein of YscJ/FliF family VagYM19_44110 PF02049 Flagellar hook-basal body complex protein FliE VagYM19_44120 PF00158 Sigma-54 interaction domain VagYM19_44120 PF00072 Response regulator receiver domain VagYM19_44120 PF02954 Bacterial regulatory protein, Fis family VagYM19_44150 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VagYM19_44160 PF00813 FliP family VagYM19_44170 PF01313 Bacterial export proteins, family 3 VagYM19_44180 PF01311 Bacterial export proteins, family 1 VagYM19_44190 PF01312 FlhB HrpN YscU SpaS Family VagYM19_44200 PF00771 FHIPEP family VagYM19_44220 PF00669 Bacterial flagellin N-terminal helical region VagYM19_44220 PF00700 Bacterial flagellin C-terminal helical region VagYM19_44260 PF07195 Flagellar hook-associated protein 2 C-terminus VagYM19_44260 PF02465 Flagellar hook-associated protein 2 N-terminus VagYM19_44260 PF07196 Flagellin hook IN motif VagYM19_44270 PF02561 Flagellar protein FliS VagYM19_44300 PF03748 Flagellar basal body-associated protein FliL VagYM19_44310 PF04542 Sigma-70 region 2 VagYM19_44310 PF04545 Sigma-70, region 4 VagYM19_44320 PF01618 MotA/TolQ/ExbB proton channel family VagYM19_44330 PF13677 Membrane MotB of proton-channel complex MotA/MotB VagYM19_44330 PF00691 OmpA family VagYM19_44360 PF08000 Bacterial PH domain VagYM19_44430 PF02901 Pyruvate formate lyase-like VagYM19_44430 PF01228 Glycine radical VagYM19_44440 PF04055 Radical SAM superfamily VagYM19_44450 PF00923 Transaldolase/Fructose-6-phosphate aldolase VagYM19_44470 PF00583 Acetyltransferase (GNAT) family VagYM19_44490 PF07690 Major Facilitator Superfamily VagYM19_44500 PF03466 LysR substrate binding domain VagYM19_44500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_44510 PF00892 EamA-like transporter family VagYM19_44550 PF13533 Biotin-lipoyl like VagYM19_44570 PF01594 AI-2E family transporter VagYM19_44580 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VagYM19_44590 PF00175 Oxidoreductase NAD-binding domain VagYM19_44590 PF00970 Oxidoreductase FAD-binding domain VagYM19_44610 PF09905 DNA-binding protein VF530 VagYM19_44620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_44620 PF03466 LysR substrate binding domain VagYM19_44640 PF00881 Nitroreductase family VagYM19_44650 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VagYM19_44650 PF12833 Helix-turn-helix domain VagYM19_44660 PF00128 Alpha amylase, catalytic domain VagYM19_44660 PF00686 Starch binding domain VagYM19_44670 PF07943 Penicillin-binding protein 5, C-terminal domain VagYM19_44670 PF00768 D-alanyl-D-alanine carboxypeptidase VagYM19_44680 PF00561 alpha/beta hydrolase fold VagYM19_44720 PF00875 DNA photolyase VagYM19_44720 PF03441 FAD binding domain of DNA photolyase VagYM19_44730 PF02469 Fasciclin domain VagYM19_44740 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VagYM19_44740 PF18416 N-acetylglucosamine binding protein domain 2 VagYM19_44750 PF01734 Patatin-like phospholipase VagYM19_44760 PF01914 MarC family integral membrane protein VagYM19_44770 PF00881 Nitroreductase family VagYM19_44790 PF10531 SLBB domain VagYM19_44790 PF02563 Polysaccharide biosynthesis/export protein VagYM19_44790 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VagYM19_44800 PF01451 Low molecular weight phosphotyrosine protein phosphatase VagYM19_44810 PF02706 Chain length determinant protein VagYM19_44810 PF13614 AAA domain VagYM19_44810 PF13807 G-rich domain on putative tyrosine kinase VagYM19_44830 PF00375 Sodium:dicarboxylate symporter family VagYM19_44840 PF06803 Protein of unknown function (DUF1232) VagYM19_44850 PF07687 Peptidase dimerisation domain VagYM19_44850 PF01546 Peptidase family M20/M25/M40 VagYM19_44860 PF07670 Nucleoside recognition VagYM19_44870 PF07670 Nucleoside recognition VagYM19_44890 PF00128 Alpha amylase, catalytic domain VagYM19_44900 PF00912 Transglycosylase VagYM19_44910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VagYM19_44910 PF00128 Alpha amylase, catalytic domain VagYM19_44910 PF02806 Alpha amylase, C-terminal all-beta domain VagYM19_44920 PF02446 4-alpha-glucanotransferase VagYM19_44930 PF00343 Carbohydrate phosphorylase VagYM19_44940 PF00196 Bacterial regulatory proteins, luxR family VagYM19_44940 PF17874 MalT-like TPR region VagYM19_44970 PF02630 SCO1/SenC VagYM19_44980 PF02378 Phosphotransferase system, EIIC VagYM19_44980 PF00367 phosphotransferase system, EIIB VagYM19_44990 PF03193 RsgA GTPase VagYM19_45000 PF00375 Sodium:dicarboxylate symporter family VagYM19_45010 PF08543 Phosphomethylpyrimidine kinase VagYM19_45030 PF13520 Amino acid permease VagYM19_45040 PF01276 Orn/Lys/Arg decarboxylase, major domain VagYM19_45040 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VagYM19_45040 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VagYM19_45070 PF11852 Domain of unknown function (DUF3372) VagYM19_45070 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VagYM19_45070 PF18494 Pullulanase Ins domain VagYM19_45070 PF03714 Bacterial pullanase-associated domain VagYM19_45070 PF17967 Pullulanase N2 domain VagYM19_45080 PF04231 Endonuclease I VagYM19_45090 PF16657 Maltogenic Amylase, C-terminal domain VagYM19_45090 PF02903 Alpha amylase, N-terminal ig-like domain VagYM19_45090 PF00128 Alpha amylase, catalytic domain VagYM19_45120 PF02264 LamB porin VagYM19_45130 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VagYM19_45130 PF00128 Alpha amylase, catalytic domain VagYM19_45150 PF07690 Major Facilitator Superfamily VagYM19_45200 PF04225 Opacity-associated protein A LysM-like domain VagYM19_45200 PF01551 Peptidase family M23 VagYM19_45210 PF00675 Insulinase (Peptidase family M16) VagYM19_45210 PF05193 Peptidase M16 inactive domain VagYM19_45220 PF00672 HAMP domain VagYM19_45220 PF17200 Single Cache domain 2 VagYM19_45220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM19_45230 PF00005 ABC transporter VagYM19_45240 PF01032 FecCD transport family VagYM19_45250 PF01032 FecCD transport family VagYM19_45260 PF01497 Periplasmic binding protein VagYM19_45270 PF00593 TonB dependent receptor VagYM19_45270 PF07660 Secretin and TonB N terminus short domain VagYM19_45270 PF07715 TonB-dependent Receptor Plug Domain VagYM19_45280 PF07715 TonB-dependent Receptor Plug Domain VagYM19_45280 PF00593 TonB dependent receptor VagYM19_45290 PF00206 Lyase VagYM19_45290 PF02655 ATP-grasp domain VagYM19_45300 PF06276 Ferric iron reductase FhuF-like transporter VagYM19_45300 PF04183 IucA / IucC family VagYM19_45320 PF06276 Ferric iron reductase FhuF-like transporter VagYM19_45320 PF04183 IucA / IucC family VagYM19_45330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VagYM19_45330 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VagYM19_45340 PF01547 Bacterial extracellular solute-binding protein VagYM19_45350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_45350 PF08521 Two-component sensor kinase N-terminal VagYM19_45350 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_45360 PF00072 Response regulator receiver domain VagYM19_45360 PF00486 Transcriptional regulatory protein, C terminal VagYM19_45370 PF02378 Phosphotransferase system, EIIC VagYM19_45370 PF00367 phosphotransferase system, EIIB VagYM19_45410 PF08241 Methyltransferase domain VagYM19_45430 PF00535 Glycosyl transferase family 2 VagYM19_45460 PF00005 ABC transporter VagYM19_45500 PF02566 OsmC-like protein VagYM19_45510 PF01047 MarR family VagYM19_45520 PF00578 AhpC/TSA family VagYM19_45520 PF10417 C-terminal domain of 1-Cys peroxiredoxin VagYM19_45530 PF13192 Thioredoxin domain VagYM19_45530 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM19_45560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM19_45560 PF03466 LysR substrate binding domain VagYM19_45570 PF01965 DJ-1/PfpI family VagYM19_45570 PF12833 Helix-turn-helix domain VagYM19_45580 PF08281 Sigma-70, region 4 VagYM19_45580 PF04542 Sigma-70 region 2 VagYM19_45620 PF03475 3-alpha domain VagYM19_45620 PF03473 MOSC domain VagYM19_45670 PF06719 AraC-type transcriptional regulator N-terminus VagYM19_45670 PF12833 Helix-turn-helix domain VagYM19_45690 PF00664 ABC transporter transmembrane region VagYM19_45690 PF00005 ABC transporter VagYM19_45710 PF01037 Lrp/AsnC ligand binding domain VagYM19_45740 PF13302 Acetyltransferase (GNAT) domain VagYM19_45770 PF00474 Sodium:solute symporter family VagYM19_45780 PF00474 Sodium:solute symporter family VagYM19_45800 PF14850 DNA-binding domain of Proline dehydrogenase VagYM19_45800 PF00171 Aldehyde dehydrogenase family VagYM19_45800 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VagYM19_45800 PF01619 Proline dehydrogenase VagYM19_45810 PF12833 Helix-turn-helix domain VagYM19_45830 PF01243 Pyridoxamine 5'-phosphate oxidase VagYM19_45830 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VagYM19_45840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM19_45840 PF02743 Cache domain VagYM19_45840 PF00512 His Kinase A (phospho-acceptor) domain VagYM19_45850 PF00072 Response regulator receiver domain VagYM19_45850 PF02954 Bacterial regulatory protein, Fis family VagYM19_45850 PF00158 Sigma-54 interaction domain VagYM19_45860 PF00529 HlyD membrane-fusion protein of T1SS VagYM19_45890 PF00005 ABC transporter VagYM19_45890 PF03412 Peptidase C39 family VagYM19_45890 PF00664 ABC transporter transmembrane region VagYM19_45920 PF03358 NADPH-dependent FMN reductase VagYM19_45930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM19_45940 PF00246 Zinc carboxypeptidase VagYM19_45950 PF01418 Helix-turn-helix domain, rpiR family VagYM19_45950 PF01380 SIS domain VagYM19_45960 PF01380 SIS domain VagYM19_45970 PF00367 phosphotransferase system, EIIB VagYM19_45970 PF02378 Phosphotransferase system, EIIC VagYM19_45980 PF00267 Gram-negative porin VagYM19_46000 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM19_46020 PF13718 GNAT acetyltransferase 2 VagYM19_46020 PF05127 Helicase VagYM19_46030 PF02195 ParB-like nuclease domain VagYM19_46030 PF08775 ParB family VagYM19_46040 PF18607 ParA helix turn helix domain VagYM19_46040 PF13614 AAA domain