locus-tag class description VagYM4_00010 IPR003593 AAA+ ATPase domain VagYM4_00010 IPR020591 Chromosomal replication control, initiator DnaA-like VagYM4_00010 IPR018312 Chromosomal replication control, initiator DnaA, conserved site VagYM4_00010 IPR013317 Chromosomal replication initiator protein DnaA VagYM4_00010 IPR013159 Chromosomal replication initiator, DnaA C-terminal VagYM4_00010 IPR024633 DnaA N-terminal domain VagYM4_00010 IPR038454 DnaA, N-terminal domain superfamily VagYM4_00010 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_00010 IPR001957 Chromosomal replication control, initiator DnaA VagYM4_00010 IPR010921 Trp repressor/replication initiator VagYM4_00020 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal VagYM4_00020 IPR022637 DNA polymerase III, beta sliding clamp, central VagYM4_00020 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal VagYM4_00020 IPR001001 DNA polymerase III, beta sliding clamp VagYM4_00030 IPR018078 DNA-binding, RecF, conserved site VagYM4_00030 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_00030 IPR001238 DNA-binding, RecF VagYM4_00030 IPR042174 DNA-binding RecF, domain 2 VagYM4_00030 IPR003395 RecF/RecN/SMC, N-terminal VagYM4_00040 IPR002288 DNA gyrase B subunit, C-terminal VagYM4_00040 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_00040 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_00040 IPR001241 DNA topoisomerase, type IIA VagYM4_00040 IPR011557 DNA gyrase, subunit B VagYM4_00040 IPR013760 DNA topoisomerase, type IIA-like domain superfamily VagYM4_00040 IPR041423 DNA gyrase subunit B insert domain VagYM4_00040 IPR018522 DNA topoisomerase, type IIA, conserved site VagYM4_00040 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_00040 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal VagYM4_00040 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 VagYM4_00040 IPR034160 DNA gyrase subunit B, TOPRIM domain VagYM4_00040 IPR006171 TOPRIM domain VagYM4_00040 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_00070 IPR008978 HSP20-like chaperone VagYM4_00070 IPR023728 Small heat shock protein IbpA VagYM4_00070 IPR002068 Alpha crystallin/Hsp20 domain VagYM4_00070 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain VagYM4_00080 IPR004839 Aminotransferase, class I/classII VagYM4_00080 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_00080 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_00090 IPR017853 Glycoside hydrolase superfamily VagYM4_00090 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_00090 IPR014635 Alpha-amylase, MalS type VagYM4_00100 IPR008909 DALR anticodon binding VagYM4_00100 IPR006194 Glycine-tRNA synthetase, heterodimeric VagYM4_00100 IPR015944 Glycine-tRNA ligase, beta subunit VagYM4_00110 IPR006194 Glycine-tRNA synthetase, heterodimeric VagYM4_00110 IPR002310 Glycine-tRNA ligase, alpha subunit VagYM4_00120 IPR001727 Gdt1 family VagYM4_00140 IPR022931 Sulfur carrier protein TusA VagYM4_00140 IPR036868 TusA-like domain superfamily VagYM4_00140 IPR001455 TusA-like domain VagYM4_00160 IPR023746 Transcription regulator HTH, YidZ VagYM4_00160 IPR005119 LysR, substrate-binding VagYM4_00160 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_00160 IPR037402 HTH-type transcriptional regulator YidZ, PBP2 domain VagYM4_00160 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_00160 IPR000847 Transcription regulator HTH, LysR VagYM4_00170 IPR014188 Acrylyl-CoA reductase AcuI VagYM4_00170 IPR013149 Alcohol dehydrogenase, C-terminal VagYM4_00170 IPR013154 Alcohol dehydrogenase, N-terminal VagYM4_00170 IPR011032 GroES-like superfamily VagYM4_00170 IPR036291 NAD(P)-binding domain superfamily VagYM4_00170 IPR020843 Polyketide synthase, enoylreductase domain VagYM4_00180 IPR012805 Acetyl-CoA C-acyltransferase FadA VagYM4_00180 IPR020616 Thiolase, N-terminal VagYM4_00180 IPR020613 Thiolase, conserved site VagYM4_00180 IPR020617 Thiolase, C-terminal VagYM4_00180 IPR020615 Thiolase, acyl-enzyme intermediate active site VagYM4_00180 IPR016039 Thiolase-like VagYM4_00180 IPR002155 Thiolase VagYM4_00180 IPR020610 Thiolase, active site VagYM4_00190 IPR036291 NAD(P)-binding domain superfamily VagYM4_00190 IPR012799 Fatty oxidation complex, alpha subunit FadB VagYM4_00190 IPR001753 Enoyl-CoA hydratase/isomerase VagYM4_00190 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_00190 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site VagYM4_00190 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding VagYM4_00190 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal VagYM4_00190 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_00200 IPR035647 EF-G domain III/V-like VagYM4_00200 IPR001498 Impact, N-terminal VagYM4_00200 IPR036956 Impact, N-terminal domain superfamily VagYM4_00200 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site VagYM4_00200 IPR015796 Impact family, bacterial/archaeal VagYM4_00200 IPR023582 Impact family VagYM4_00200 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_00200 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal VagYM4_00210 IPR003445 Cation transporter VagYM4_00210 IPR004772 TrkH potassium transport family VagYM4_00220 IPR008254 Flavodoxin/nitric oxide synthase VagYM4_00220 IPR026816 Flavodoxin domain VagYM4_00220 IPR029039 Flavoprotein-like superfamily VagYM4_00220 IPR001226 Flavodoxin, conserved site VagYM4_00230 IPR005119 LysR, substrate-binding VagYM4_00230 IPR000847 Transcription regulator HTH, LysR VagYM4_00230 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_00230 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_00230 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain VagYM4_00240 IPR013116 Ketol-acid reductoisomerase, N-terminal VagYM4_00240 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_00240 IPR013328 6-phosphogluconate dehydrogenase, domain 2 VagYM4_00240 IPR013023 Ketol-acid reductoisomerase VagYM4_00240 IPR036291 NAD(P)-binding domain superfamily VagYM4_00240 IPR000506 Ketol-acid reductoisomerase, C-terminal VagYM4_00250 IPR007475 Ubiquinone biosynthesis accessory factor UbiK VagYM4_00260 IPR001036 Acriflavin resistance protein VagYM4_00260 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_00270 IPR006143 RND efflux pump, membrane fusion protein VagYM4_00270 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_00280 IPR009057 Homeobox-like domain superfamily VagYM4_00280 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_00280 IPR032551 HTH-type transcriptional repressor, C-terminal VagYM4_00280 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VagYM4_00280 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_00290 IPR005752 ATP-dependent DNA helicase Rep VagYM4_00290 IPR014017 UvrD-like DNA helicase, C-terminal VagYM4_00290 IPR013986 DExx box DNA helicase domain superfamily VagYM4_00290 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_00290 IPR014016 UvrD-like helicase, ATP-binding domain VagYM4_00290 IPR034739 UvrD/AddA helicase, N-terminal VagYM4_00290 IPR000212 DNA helicase, UvrD/REP type VagYM4_00300 IPR036909 Cytochrome c-like domain superfamily VagYM4_00300 IPR009056 Cytochrome c-like domain VagYM4_00300 IPR002323 Cytochrome c, class IE VagYM4_00320 IPR003593 AAA+ ATPase domain VagYM4_00320 IPR003439 ABC transporter-like VagYM4_00320 IPR017871 ABC transporter, conserved site VagYM4_00320 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_00320 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_00330 IPR000914 Solute-binding protein family 5 domain VagYM4_00330 IPR023765 Solute-binding protein family 5, conserved site VagYM4_00330 IPR030678 Peptide/nickel binding protein, MppA-type VagYM4_00330 IPR039424 Solute-binding protein family 5 VagYM4_00350 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_00350 IPR035906 MetI-like superfamily VagYM4_00350 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VagYM4_00420 IPR001761 Periplasmic binding protein/LacI sugar binding domain VagYM4_00420 IPR000843 LacI-type HTH domain VagYM4_00420 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_00420 IPR028082 Periplasmic binding protein-like I VagYM4_00430 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_00430 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_00430 IPR000847 Transcription regulator HTH, LysR VagYM4_00430 IPR005119 LysR, substrate-binding VagYM4_00440 IPR023740 Spermidine export protein MdtJ VagYM4_00440 IPR000390 Small multidrug resistance protein family VagYM4_00450 IPR023737 Spermidine export protein MdtI VagYM4_00450 IPR000390 Small multidrug resistance protein family VagYM4_00460 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site VagYM4_00460 IPR004786 6-phosphogluconate dehydratase VagYM4_00460 IPR037237 IlvD/EDD, N-terminal domain VagYM4_00460 IPR042096 Dihydroxy-acid dehydratase, C-terminal VagYM4_00460 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase VagYM4_00470 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_00470 IPR031322 Shikimate kinase/gluconokinase VagYM4_00470 IPR006001 Carbohydrate kinase, thermoresistant glucokinase VagYM4_00480 IPR003474 Gluconate transporter VagYM4_00490 IPR031338 KDPG/KHG aldolase, active site 2 VagYM4_00490 IPR031337 KDPG/KHG aldolase, active site 1 VagYM4_00490 IPR013785 Aldolase-type TIM barrel VagYM4_00490 IPR000887 KDPG/KHG aldolase VagYM4_00500 IPR035994 Nucleoside phosphorylase superfamily VagYM4_00500 IPR011268 Purine nucleoside phosphorylase VagYM4_00500 IPR010943 Xanthosine phosphorylase VagYM4_00500 IPR018099 Purine phosphorylase, family 2, conserved site VagYM4_00500 IPR000845 Nucleoside phosphorylase domain VagYM4_00510 IPR005119 LysR, substrate-binding VagYM4_00510 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_00510 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_00510 IPR000847 Transcription regulator HTH, LysR VagYM4_00510 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain VagYM4_00520 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site VagYM4_00520 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I VagYM4_00520 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily VagYM4_00520 IPR023753 FAD/NAD(P)-binding domain VagYM4_00520 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_00520 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_00520 IPR006322 Glutathione reductase, eukaryote/bacterial VagYM4_00530 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_00530 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_00530 IPR007473 Ribosomal RNA large subunit methyltransferase J VagYM4_00540 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 VagYM4_00540 IPR001567 Peptidase M3A/M3B catalytic domain VagYM4_00550 IPR019888 Transcription regulator AsnC-type VagYM4_00550 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VagYM4_00550 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_00550 IPR011991 ArsR-like helix-turn-helix domain VagYM4_00550 IPR000485 AsnC-type HTH domain VagYM4_00550 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_00550 IPR011008 Dimeric alpha-beta barrel VagYM4_00550 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VagYM4_00560 IPR001633 EAL domain VagYM4_00560 IPR035919 EAL domain superfamily VagYM4_00560 IPR029787 Nucleotide cyclase VagYM4_00560 IPR000014 PAS domain VagYM4_00560 IPR035965 PAS domain superfamily VagYM4_00560 IPR013656 PAS fold-4 VagYM4_00560 IPR000160 GGDEF domain VagYM4_00570 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_00570 IPR007536 Ribosomal RNA small subunit methyltransferase J VagYM4_00590 IPR004779 Carboxylate/Amino Acid/Amine Transporter VagYM4_00590 IPR000620 EamA domain VagYM4_00600 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_00600 IPR006016 UspA VagYM4_00600 IPR006015 Universal stress protein A family VagYM4_00610 IPR009078 Ferritin-like superfamily VagYM4_00610 IPR009040 Ferritin-like diiron domain VagYM4_00610 IPR012347 Ferritin-like VagYM4_00610 IPR001519 Ferritin VagYM4_00610 IPR041719 Ferritin, prokaryotic-type VagYM4_00610 IPR008331 Ferritin/DPS protein domain VagYM4_00620 IPR019598 Universal stress protein B VagYM4_00630 IPR023166 HI0933-like insert domain superfamily VagYM4_00630 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_00630 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like VagYM4_00640 IPR002197 DNA binding HTH domain, Fis-type VagYM4_00640 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_00640 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_00640 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_00640 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_00640 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_00640 IPR001789 Signal transduction response regulator, receiver domain VagYM4_00640 IPR003593 AAA+ ATPase domain VagYM4_00640 IPR011006 CheY-like superfamily VagYM4_00640 IPR009057 Homeobox-like domain superfamily VagYM4_00690 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily VagYM4_00690 IPR022433 Lipid kinase YegS VagYM4_00690 IPR001206 Diacylglycerol kinase, catalytic domain VagYM4_00690 IPR005218 Diacylglycerol/lipid kinase VagYM4_00690 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal VagYM4_00750 IPR002549 Transmembrane protein TqsA-like VagYM4_00760 IPR029787 Nucleotide cyclase VagYM4_00760 IPR005330 MHYT domain VagYM4_00760 IPR000160 GGDEF domain VagYM4_00760 IPR035919 EAL domain superfamily VagYM4_00760 IPR001633 EAL domain VagYM4_00780 IPR003798 DNA recombination RmuC VagYM4_00790 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_00790 IPR004033 UbiE/COQ5 methyltransferase VagYM4_00790 IPR023576 UbiE/COQ5 methyltransferase, conserved site VagYM4_00800 IPR003033 SCP2 sterol-binding domain VagYM4_00800 IPR036527 SCP2 sterol-binding domain superfamily VagYM4_00800 IPR038989 Ubiquinone biosynthesis protein UbiJ VagYM4_00810 IPR010232 Probable protein kinase UbiB VagYM4_00810 IPR004147 UbiB domain VagYM4_00810 IPR011009 Protein kinase-like domain superfamily VagYM4_00820 IPR006312 Sec-independent protein translocase protein TatA/E VagYM4_00820 IPR003369 Sec-independent protein translocase protein TatA/B/E VagYM4_00830 IPR003369 Sec-independent protein translocase protein TatA/B/E VagYM4_00830 IPR018448 Twin-arginine translocation protein TatB VagYM4_00840 IPR019820 Sec-independent periplasmic protein translocase, conserved site VagYM4_00840 IPR002033 Sec-independent periplasmic protein translocase TatC VagYM4_00850 IPR032466 Metal-dependent hydrolase VagYM4_00850 IPR001130 TatD family VagYM4_00850 IPR018228 Deoxyribonuclease, TatD-related, conserved site VagYM4_00850 IPR015991 Uncharacterised hydrolase TatD-type VagYM4_00860 IPR001731 Delta-aminolevulinic acid dehydratase VagYM4_00860 IPR030656 Delta-aminolevulinic acid dehydratase, active site VagYM4_00860 IPR013785 Aldolase-type TIM barrel VagYM4_00870 IPR016181 Acyl-CoA N-acyltransferase VagYM4_00870 IPR000182 GNAT domain VagYM4_00880 IPR002562 3'-5' exonuclease domain VagYM4_00880 IPR001098 DNA-directed DNA polymerase, family A, palm domain VagYM4_00880 IPR008918 Helix-hairpin-helix motif, class 2 VagYM4_00880 IPR002298 DNA polymerase A VagYM4_00880 IPR029060 PIN-like domain superfamily VagYM4_00880 IPR012337 Ribonuclease H-like superfamily VagYM4_00880 IPR036397 Ribonuclease H superfamily VagYM4_00880 IPR019760 DNA-directed DNA polymerase, family A, conserved site VagYM4_00880 IPR036279 5'-3' exonuclease, C-terminal domain superfamily VagYM4_00880 IPR018320 DNA polymerase 1 VagYM4_00880 IPR002421 5'-3' exonuclease, N-terminal VagYM4_00880 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal VagYM4_00880 IPR020045 DNA polymerase I-like, H3TH domain VagYM4_00890 IPR030393 EngB-type guanine nucleotide-binding (G) domain VagYM4_00890 IPR006073 GTP binding domain VagYM4_00890 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_00890 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC VagYM4_00900 IPR024167 Cytochrome c4-like VagYM4_00900 IPR036909 Cytochrome c-like domain superfamily VagYM4_00900 IPR009056 Cytochrome c-like domain VagYM4_00920 IPR007336 Der GTPase activator VagYM4_00930 IPR019617 Domain of unknown function DUF2489 VagYM4_00940 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN VagYM4_00940 IPR034505 Anaerobic coproporphyrinogen-III oxidase VagYM4_00940 IPR007197 Radical SAM VagYM4_00940 IPR006638 Elp3/MiaB/NifB VagYM4_00940 IPR023404 Radical SAM, alpha/beta horseshoe VagYM4_00940 IPR010723 HemN, C-terminal VagYM4_00950 IPR032466 Metal-dependent hydrolase VagYM4_00950 IPR006330 Adenosine/adenine deaminase VagYM4_00950 IPR001365 Adenosine/AMP deaminase domain VagYM4_00950 IPR028893 Adenosine deaminase VagYM4_00960 IPR001633 EAL domain VagYM4_00960 IPR035919 EAL domain superfamily VagYM4_00960 IPR000160 GGDEF domain VagYM4_00960 IPR005330 MHYT domain VagYM4_00960 IPR029787 Nucleotide cyclase VagYM4_00970 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_00970 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_00970 IPR010114 DNA-binding transcriptional regulator NtrC VagYM4_00970 IPR002197 DNA binding HTH domain, Fis-type VagYM4_00970 IPR001789 Signal transduction response regulator, receiver domain VagYM4_00970 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_00970 IPR009057 Homeobox-like domain superfamily VagYM4_00970 IPR011006 CheY-like superfamily VagYM4_00970 IPR003593 AAA+ ATPase domain VagYM4_00970 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_00970 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_00980 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_00980 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_00980 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_00980 IPR005467 Histidine kinase domain VagYM4_00980 IPR013767 PAS fold VagYM4_00980 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_00980 IPR000014 PAS domain VagYM4_00980 IPR035965 PAS domain superfamily VagYM4_00980 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_01000 IPR008147 Glutamine synthetase, beta-Grasp domain VagYM4_01000 IPR036651 Glutamine synthetase, N-terminal domain superfamily VagYM4_01000 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain VagYM4_01000 IPR008146 Glutamine synthetase, catalytic domain VagYM4_01000 IPR004809 Glutamine synthetase type I VagYM4_01000 IPR001637 Glutamine synthetase class-I, adenylation site VagYM4_01000 IPR027302 Glutamine synthetase, N-terminal conserved site VagYM4_01000 IPR027303 Glutamine synthetase, glycine-rich site VagYM4_01040 IPR017039 Virulence factor BrkB VagYM4_01040 IPR023679 Uncharacterised protein family UPF0761, bacterial VagYM4_01050 IPR003732 D-aminoacyl-tRNA deacylase DTD VagYM4_01050 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily VagYM4_01060 IPR016181 Acyl-CoA N-acyltransferase VagYM4_01060 IPR029069 HotDog domain superfamily VagYM4_01060 IPR012660 Thioesterase, putative VagYM4_01060 IPR000182 GNAT domain VagYM4_01080 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site VagYM4_01080 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal VagYM4_01080 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal VagYM4_01080 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising VagYM4_01090 IPR000397 Heat shock protein Hsp33 VagYM4_01090 IPR016153 Heat shock protein Hsp33, N-terminal VagYM4_01090 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily VagYM4_01090 IPR016154 Heat shock protein Hsp33, C-terminal VagYM4_01100 IPR025708 Heat shock protein 15 VagYM4_01100 IPR002942 RNA-binding S4 domain VagYM4_01100 IPR036986 RNA-binding S4 domain superfamily VagYM4_01110 IPR036034 PDZ superfamily VagYM4_01110 IPR024961 Type II secretion system protein C, N-terminal VagYM4_01110 IPR001639 Type II secretion system protein C VagYM4_01120 IPR005644 NolW-like VagYM4_01120 IPR001775 GspD/PilQ family VagYM4_01120 IPR038591 NolW-like superfamily VagYM4_01120 IPR004845 Type II secretion system GspD, conserved site VagYM4_01120 IPR004846 Type II/III secretion system VagYM4_01120 IPR013356 Type II secretion system GspD VagYM4_01130 IPR013369 Type II secretion system GspE VagYM4_01130 IPR042181 Type II secretion system, protein E, N-terminal VagYM4_01130 IPR003593 AAA+ ATPase domain VagYM4_01130 IPR001482 Type II/IV secretion system protein VagYM4_01130 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_01130 IPR037257 General secretory system II, protein E, N-terminal superfamily VagYM4_01140 IPR042094 Type II secretion system F domain superfamily VagYM4_01140 IPR018076 Type II secretion system F domain VagYM4_01140 IPR001992 Type II secretion system conserved site VagYM4_01140 IPR011850 General secretion pathway protein F VagYM4_01140 IPR003004 GspF/PilC family VagYM4_01150 IPR013545 Type II secretion system protein G VagYM4_01150 IPR012902 Prokaryotic N-terminal methylation site VagYM4_01150 IPR010054 General secretion pathway protein G VagYM4_01150 IPR000983 Bacterial general secretion pathway protein G-type pilin VagYM4_01160 IPR022346 General secretion pathway, GspH VagYM4_01160 IPR012902 Prokaryotic N-terminal methylation site VagYM4_01160 IPR002416 Type II secretion system protein H VagYM4_01170 IPR010052 Type II secretion system protein I VagYM4_01170 IPR003413 Type II secretion system protein I domain VagYM4_01170 IPR012902 Prokaryotic N-terminal methylation site VagYM4_01180 IPR010055 Type II secretion system protein J VagYM4_01180 IPR012902 Prokaryotic N-terminal methylation site VagYM4_01190 IPR038072 GspK, central domain superfamily VagYM4_01190 IPR005628 General secretion pathway protein K VagYM4_01200 IPR024230 GspL, cytoplasmic actin-ATPase-like domain VagYM4_01200 IPR025691 GspL periplasmic domain VagYM4_01200 IPR007812 Type II secretion system protein L VagYM4_01210 IPR023229 Type II secretion system protein M, periplasmic domain superfamily VagYM4_01210 IPR007690 Type II secretion system, protein M VagYM4_01220 IPR022792 Type II secretion system, protein N VagYM4_01220 IPR000645 Type II secretion system protein N, conserved site VagYM4_01230 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ VagYM4_01230 IPR020583 Inositol monophosphatase, metal-binding site VagYM4_01230 IPR000760 Inositol monophosphatase-like VagYM4_01230 IPR020550 Inositol monophosphatase, conserved site VagYM4_01240 IPR015797 NUDIX hydrolase-like domain superfamily VagYM4_01240 IPR020084 NUDIX hydrolase, conserved site VagYM4_01240 IPR000086 NUDIX hydrolase domain VagYM4_01250 IPR017726 Fe/S biogenesis protein NfuA VagYM4_01250 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal VagYM4_01250 IPR034904 Fe-S cluster assembly domain superfamily VagYM4_01250 IPR035903 HesB-like domain superfamily VagYM4_01250 IPR000361 FeS cluster biogenesis VagYM4_01260 IPR029057 Phosphoribosyltransferase-like VagYM4_01260 IPR000836 Phosphoribosyltransferase domain VagYM4_01260 IPR005222 Competence protein ComF VagYM4_01270 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase VagYM4_01270 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_01270 IPR029058 Alpha/Beta hydrolase fold VagYM4_01290 IPR022967 RNA-binding domain, S1 VagYM4_01290 IPR018974 Tex-like protein, N-terminal VagYM4_01290 IPR032639 Tex protein, YqgF-like domain VagYM4_01290 IPR006641 YqgF/RNase H-like domain VagYM4_01290 IPR037027 YqgF/RNase H-like domain superfamily VagYM4_01290 IPR041692 HHH domain 9 VagYM4_01290 IPR023319 Tex-like protein, HTH domain superfamily VagYM4_01290 IPR012340 Nucleic acid-binding, OB-fold VagYM4_01290 IPR023323 Tex-like domain superfamily VagYM4_01290 IPR003029 S1 domain VagYM4_01290 IPR010994 RuvA domain 2-like VagYM4_01290 IPR012337 Ribonuclease H-like superfamily VagYM4_01310 IPR018151 Transcription elongation factor, GreA/GreB, conserved site VagYM4_01310 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily VagYM4_01310 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily VagYM4_01310 IPR028624 Transcription elongation factor GreA/GreB VagYM4_01310 IPR023459 Transcription elongation factor GreA/GreB family VagYM4_01310 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal VagYM4_01310 IPR006358 Transcription elongation factor GreB VagYM4_01310 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal VagYM4_01330 IPR001789 Signal transduction response regulator, receiver domain VagYM4_01330 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_01330 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_01330 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_01330 IPR011006 CheY-like superfamily VagYM4_01330 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_01340 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_01340 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_01340 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_01340 IPR003660 HAMP domain VagYM4_01340 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_01340 IPR005467 Histidine kinase domain VagYM4_01340 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_01350 IPR006042 Xanthine/uracil permease VagYM4_01350 IPR006043 Xanthine/uracil/vitamin C permease VagYM4_01360 IPR004609 ATP-dependent DNA helicase RecG VagYM4_01360 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_01360 IPR012340 Nucleic acid-binding, OB-fold VagYM4_01360 IPR001650 Helicase, C-terminal VagYM4_01360 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_01360 IPR011545 DEAD/DEAH box helicase domain VagYM4_01360 IPR033454 RecG, wedge domain VagYM4_01370 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_01370 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal VagYM4_01370 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase VagYM4_01370 IPR001537 tRNA/rRNA methyltransferase, SpoU type VagYM4_01370 IPR029028 Alpha/beta knot methyltransferases VagYM4_01380 IPR004095 TGS VagYM4_01380 IPR012675 Beta-grasp domain superfamily VagYM4_01380 IPR003607 HD/PDEase domain VagYM4_01380 IPR002912 ACT domain VagYM4_01380 IPR012676 TGS-like VagYM4_01380 IPR033655 RelA, TGS domain VagYM4_01380 IPR007685 RelA/SpoT VagYM4_01380 IPR004811 RelA/SpoT family VagYM4_01390 IPR036161 RPB6/omega subunit-like superfamily VagYM4_01390 IPR003716 DNA-directed RNA polymerase, omega subunit VagYM4_01390 IPR006110 RNA polymerase, subunit omega/K/RPB6 VagYM4_01390 IPR012293 RNA polymerase subunit, RPB6/omega VagYM4_01400 IPR008144 Guanylate kinase-like domain VagYM4_01400 IPR008145 Guanylate kinase/L-type calcium channel beta subunit VagYM4_01400 IPR017665 Guanylate kinase VagYM4_01400 IPR020590 Guanylate kinase, conserved site VagYM4_01400 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_01430 IPR003400 Biopolymer transport protein ExbD/TolR VagYM4_01440 IPR002898 MotA/TolQ/ExbB proton channel VagYM4_01470 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_01470 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_01470 IPR010101 TonB-dependent vitamin B12 transporter BtuB VagYM4_01470 IPR010916 TonB box, conserved site VagYM4_01470 IPR012910 TonB-dependent receptor, plug domain VagYM4_01470 IPR039426 Vitamin B12 transporter BtuB-like VagYM4_01470 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_01470 IPR010917 TonB-dependent receptor, conserved site VagYM4_01480 IPR035906 MetI-like superfamily VagYM4_01480 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_01490 IPR035906 MetI-like superfamily VagYM4_01490 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VagYM4_01490 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_01500 IPR039424 Solute-binding protein family 5 VagYM4_01500 IPR030678 Peptide/nickel binding protein, MppA-type VagYM4_01500 IPR023765 Solute-binding protein family 5, conserved site VagYM4_01500 IPR000914 Solute-binding protein family 5 domain VagYM4_01510 IPR003593 AAA+ ATPase domain VagYM4_01510 IPR003439 ABC transporter-like VagYM4_01510 IPR017871 ABC transporter, conserved site VagYM4_01510 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_01510 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_01520 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_01520 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_01520 IPR003439 ABC transporter-like VagYM4_01520 IPR017871 ABC transporter, conserved site VagYM4_01520 IPR003593 AAA+ ATPase domain VagYM4_01540 IPR013527 YicC-like, N-terminal VagYM4_01540 IPR013551 Domain of unknown function DUF1732 VagYM4_01540 IPR005229 Conserved hypothetical protein CHP00255 VagYM4_01550 IPR027408 PNPase/RNase PH domain superfamily VagYM4_01550 IPR001247 Exoribonuclease, phosphorolytic domain 1 VagYM4_01550 IPR018336 Ribonuclease PH, conserved site VagYM4_01550 IPR002381 Ribonuclease PH, bacterial-type VagYM4_01550 IPR015847 Exoribonuclease, phosphorolytic domain 2 VagYM4_01550 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_01550 IPR036345 Exoribonuclease, PH domain 2 superfamily VagYM4_01570 IPR004960 Bacterial lipid A biosynthesis acyltransferase VagYM4_01570 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase VagYM4_01580 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_01580 IPR009057 Homeobox-like domain superfamily VagYM4_01580 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_01580 IPR023769 Nucleoid occlusion factor SlmA VagYM4_01590 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC VagYM4_01590 IPR003382 Flavoprotein VagYM4_01590 IPR036551 Flavin prenyltransferase-like VagYM4_01590 IPR035929 CoaB-like superfamily VagYM4_01590 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal VagYM4_01600 IPR003660 HAMP domain VagYM4_01600 IPR033480 Single Cache domain 2 VagYM4_01600 IPR000727 Target SNARE coiled-coil homology domain VagYM4_01600 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_01600 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_01610 IPR025657 RadC-like JAB domain VagYM4_01610 IPR037518 MPN domain VagYM4_01610 IPR010994 RuvA domain 2-like VagYM4_01610 IPR001405 Uncharacterised protein family UPF0758 VagYM4_01610 IPR020891 Uncharacterised protein family UPF0758, conserved site VagYM4_01620 IPR026569 Ribosomal protein L28/L24 VagYM4_01620 IPR001383 Ribosomal protein L28 VagYM4_01620 IPR037147 Ribosomal protein L28/L24 superfamily VagYM4_01620 IPR034704 L28p-like VagYM4_01630 IPR018264 Ribosomal protein L33, conserved site VagYM4_01630 IPR001705 Ribosomal protein L33 VagYM4_01630 IPR038584 Ribosomal protein L33 superfamily VagYM4_01630 IPR011332 Zinc-binding ribosomal protein VagYM4_01650 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site VagYM4_01650 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding VagYM4_01650 IPR020629 Formamidopyrimidine-DNA glycosylase VagYM4_01650 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain VagYM4_01650 IPR035937 MutM-like, N-terminal VagYM4_01650 IPR010979 Ribosomal protein S13-like, H2TH VagYM4_01650 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type VagYM4_01650 IPR010663 Zinc finger, FPG/IleRS-type VagYM4_01670 IPR006598 Glycosyl transferase CAP10 domain VagYM4_01680 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_01680 IPR004821 Cytidyltransferase-like domain VagYM4_01680 IPR001980 Phosphopantetheine adenylyltransferase VagYM4_01690 IPR001173 Glycosyltransferase 2-like VagYM4_01690 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_01700 IPR001173 Glycosyltransferase 2-like VagYM4_01700 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_01710 IPR002201 Glycosyl transferase, family 9 VagYM4_01720 IPR000829 DAGK family VagYM4_01720 IPR033718 Diacylglycerol kinase, prokaryotic VagYM4_01720 IPR036945 Diacylglycerol kinase (DAGK) superfamily VagYM4_01730 IPR000719 Protein kinase domain VagYM4_01730 IPR022826 3-deoxy-D-manno-octulosonic acid kinase VagYM4_01730 IPR011009 Protein kinase-like domain superfamily VagYM4_01740 IPR036291 NAD(P)-binding domain superfamily VagYM4_01740 IPR005888 dTDP-glucose 4,6-dehydratase VagYM4_01740 IPR016040 NAD(P)-binding domain VagYM4_01750 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form VagYM4_01750 IPR005835 Nucleotidyl transferase domain VagYM4_01750 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_01770 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_01770 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_01770 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_01770 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE VagYM4_01770 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like VagYM4_01770 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VagYM4_01790 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VagYM4_01790 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_01790 IPR036291 NAD(P)-binding domain superfamily VagYM4_01800 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_01800 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_01800 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_01800 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VagYM4_01810 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain VagYM4_01810 IPR020004 UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing VagYM4_01810 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like VagYM4_01820 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily VagYM4_01820 IPR013132 N-acetylneuraminic acid synthase, N-terminal VagYM4_01820 IPR013785 Aldolase-type TIM barrel VagYM4_01820 IPR020007 N-acetylneuraminate synthase VagYM4_01820 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal VagYM4_01820 IPR013974 SAF domain VagYM4_01840 IPR005835 Nucleotidyl transferase domain VagYM4_01840 IPR037538 UTP--glucose-1-phosphate uridylyltransferase, cyanobacteria VagYM4_01840 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_01850 IPR003329 Acylneuraminate cytidylyltransferase VagYM4_01850 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_01860 IPR012477 Glycosyltransferase family 52 VagYM4_01870 IPR039901 3-deoxy-D-manno-octulosonic acid transferase VagYM4_01870 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily VagYM4_01870 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal VagYM4_01880 IPR011910 ADP-heptose--LPS heptosyltransferase 2 VagYM4_01880 IPR002201 Glycosyl transferase, family 9 VagYM4_01890 IPR004960 Bacterial lipid A biosynthesis acyltransferase VagYM4_01890 IPR011921 Lipid A biosynthesis myristoyltransferase VagYM4_01900 IPR001509 NAD-dependent epimerase/dehydratase VagYM4_01900 IPR036291 NAD(P)-binding domain superfamily VagYM4_01900 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase VagYM4_01910 IPR010344 Exopolysaccharide biosynthesis protein YbjH VagYM4_01930 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB VagYM4_01930 IPR023373 YmcC-like superfamily VagYM4_01960 IPR003715 Polysaccharide export protein VagYM4_01960 IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain VagYM4_01960 IPR019554 Soluble ligand binding domain VagYM4_02030 IPR036291 NAD(P)-binding domain superfamily VagYM4_02030 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain VagYM4_02030 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VagYM4_02040 IPR036291 NAD(P)-binding domain superfamily VagYM4_02040 IPR029903 RmlD-like substrate binding domain VagYM4_02040 IPR005913 dTDP-4-dehydrorhamnose reductase family VagYM4_02050 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain VagYM4_02050 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like VagYM4_02070 IPR000715 Glycosyl transferase, family 4 VagYM4_02070 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase VagYM4_02080 IPR022712 Beta-Casp domain VagYM4_02080 IPR001279 Metallo-beta-lactamase VagYM4_02080 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VagYM4_02080 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain VagYM4_02090 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase VagYM4_02090 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation VagYM4_02090 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily VagYM4_02090 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal VagYM4_02090 IPR017476 UDP-glucose/GDP-mannose dehydrogenase VagYM4_02090 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal VagYM4_02090 IPR036291 NAD(P)-binding domain superfamily VagYM4_02090 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_02110 IPR001509 NAD-dependent epimerase/dehydratase VagYM4_02110 IPR036291 NAD(P)-binding domain superfamily VagYM4_02140 IPR011004 Trimeric LpxA-like superfamily VagYM4_02140 IPR001451 Hexapeptide repeat VagYM4_02140 IPR018357 Hexapeptide transferase, conserved site VagYM4_02140 IPR042122 Serine acetyltransferase, N-terminal domain superfamily VagYM4_02140 IPR005881 Serine O-acetyltransferase VagYM4_02170 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain VagYM4_02170 IPR001296 Glycosyl transferase, family 1 VagYM4_02180 IPR003362 Bacterial sugar transferase VagYM4_02200 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_02200 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_02200 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase VagYM4_02200 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_02210 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain VagYM4_02210 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_02210 IPR036291 NAD(P)-binding domain superfamily VagYM4_02230 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type VagYM4_02230 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation VagYM4_02230 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily VagYM4_02230 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal VagYM4_02230 IPR017476 UDP-glucose/GDP-mannose dehydrogenase VagYM4_02230 IPR036291 NAD(P)-binding domain superfamily VagYM4_02230 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_02230 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal VagYM4_02240 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic VagYM4_02240 IPR020861 Triosephosphate isomerase, active site VagYM4_02240 IPR000652 Triosephosphate isomerase VagYM4_02240 IPR035990 Triosephosphate isomerase superfamily VagYM4_02240 IPR013785 Aldolase-type TIM barrel VagYM4_02280 IPR014036 DeoR C-terminal sensor domain VagYM4_02280 IPR001034 DeoR-type HTH domain VagYM4_02280 IPR037171 NagB/RpiA transferase-like VagYM4_02280 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_02280 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_02280 IPR018356 Transcription regulator, HTH DeoR-type, conserved site VagYM4_02290 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase VagYM4_02300 IPR009252 Cell division protein ZapB VagYM4_02310 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria VagYM4_02310 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily VagYM4_02310 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein VagYM4_02310 IPR010203 Regulator of ribonuclease activity A VagYM4_02320 IPR026046 UbiA prenyltransferase domain containing protein 1 VagYM4_02320 IPR000537 UbiA prenyltransferase family VagYM4_02320 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase VagYM4_02330 IPR004491 Heat shock protein HslU VagYM4_02330 IPR003593 AAA+ ATPase domain VagYM4_02330 IPR019489 Clp ATPase, C-terminal VagYM4_02330 IPR003959 ATPase, AAA-type, core VagYM4_02330 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_02340 IPR022281 ATP-dependent protease, HslV subunit VagYM4_02340 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_02340 IPR001353 Proteasome, subunit alpha/beta VagYM4_02340 IPR023333 Proteasome B-type subunit VagYM4_02370 IPR000843 LacI-type HTH domain VagYM4_02370 IPR028082 Periplasmic binding protein-like I VagYM4_02370 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_02380 IPR041236 Primosomal protein N, C-terminal domain VagYM4_02380 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily VagYM4_02380 IPR011545 DEAD/DEAH box helicase domain VagYM4_02380 IPR001650 Helicase, C-terminal VagYM4_02380 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_02380 IPR041222 Primosomal protein N', 3' DNA-binding domain VagYM4_02380 IPR005259 Primosomal protein N' VagYM4_02380 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain VagYM4_02380 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_02390 IPR027491 Ribosomal protein L31 type A VagYM4_02390 IPR042105 Ribosomal protein L31 superfamily VagYM4_02390 IPR002150 Ribosomal protein L31 VagYM4_02390 IPR034704 L28p-like VagYM4_02400 IPR018268 Ribosomal protein S10, conserved site VagYM4_02400 IPR001848 Ribosomal protein S10 VagYM4_02400 IPR036838 Ribosomal protein S10 domain superfamily VagYM4_02400 IPR027486 Ribosomal protein S10 domain VagYM4_02410 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_02410 IPR000597 Ribosomal protein L3 VagYM4_02410 IPR019927 Ribosomal protein L3, bacterial/organelle-type VagYM4_02410 IPR019926 Ribosomal protein L3, conserved site VagYM4_02420 IPR002136 Ribosomal protein L4/L1e VagYM4_02420 IPR013005 50S ribosomal protein uL4 VagYM4_02420 IPR023574 Ribosomal protein L4 domain superfamily VagYM4_02430 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VagYM4_02430 IPR012678 Ribosomal protein L23/L15e core domain superfamily VagYM4_02430 IPR001014 Ribosomal protein L23/L25, conserved site VagYM4_02430 IPR013025 Ribosomal protein L25/L23 VagYM4_02440 IPR002171 Ribosomal protein L2 VagYM4_02440 IPR012340 Nucleic acid-binding, OB-fold VagYM4_02440 IPR008991 Translation protein SH3-like domain superfamily VagYM4_02440 IPR022669 Ribosomal protein L2, C-terminal VagYM4_02440 IPR022671 Ribosomal protein L2, conserved site VagYM4_02440 IPR014726 Ribosomal protein L2, domain 3 VagYM4_02440 IPR022666 Ribosomal Proteins L2, RNA binding domain VagYM4_02440 IPR005880 Ribosomal protein L2, bacterial/organellar-type VagYM4_02440 IPR014722 Ribosomal protein L2, domain 2 VagYM4_02450 IPR023575 Ribosomal protein S19, superfamily VagYM4_02450 IPR020934 Ribosomal protein S19 conserved site VagYM4_02450 IPR005732 Ribosomal protein S19, bacterial-type VagYM4_02450 IPR002222 Ribosomal protein S19/S15 VagYM4_02460 IPR018260 Ribosomal protein L22/L17, conserved site VagYM4_02460 IPR036394 Ribosomal protein L22/L17 superfamily VagYM4_02460 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type VagYM4_02460 IPR001063 Ribosomal protein L22/L17 VagYM4_02470 IPR005704 Ribosomal protein S3, bacterial-type VagYM4_02470 IPR018280 Ribosomal protein S3, conserved site VagYM4_02470 IPR036419 Ribosomal protein S3, C-terminal domain superfamily VagYM4_02470 IPR001351 Ribosomal protein S3, C-terminal VagYM4_02470 IPR004087 K Homology domain VagYM4_02470 IPR015946 K homology domain-like, alpha/beta VagYM4_02470 IPR004044 K Homology domain, type 2 VagYM4_02470 IPR009019 K homology domain superfamily, prokaryotic type VagYM4_02480 IPR016180 Ribosomal protein L10e/L16 VagYM4_02480 IPR036920 Ribosomal protein L10e/L16 superfamily VagYM4_02480 IPR000114 Ribosomal protein L16 VagYM4_02480 IPR020798 Ribosomal protein L16, conserved site VagYM4_02490 IPR036049 Ribosomal protein L29/L35 superfamily VagYM4_02490 IPR018254 Ribosomal protein L29, conserved site VagYM4_02490 IPR001854 Ribosomal protein L29/L35 VagYM4_02500 IPR012340 Nucleic acid-binding, OB-fold VagYM4_02500 IPR019979 Ribosomal protein S17, conserved site VagYM4_02500 IPR019984 30S ribosomal protein S17 VagYM4_02500 IPR000266 Ribosomal protein S17/S11 VagYM4_02510 IPR019972 Ribosomal protein L14P, conserved site VagYM4_02510 IPR005745 Ribosomal protein L14P, bacterial-type VagYM4_02510 IPR000218 Ribosomal protein L14P VagYM4_02510 IPR036853 Ribosomal protein L14 superfamily VagYM4_02520 IPR008991 Translation protein SH3-like domain superfamily VagYM4_02520 IPR005825 Ribosomal protein L24/L26, conserved site VagYM4_02520 IPR003256 Ribosomal protein L24 VagYM4_02520 IPR014722 Ribosomal protein L2, domain 2 VagYM4_02520 IPR041988 Ribosomal Protein L26/L24, KOW domain VagYM4_02520 IPR005824 KOW VagYM4_02530 IPR022803 Ribosomal protein L5 domain superfamily VagYM4_02530 IPR031309 Ribosomal protein L5, C-terminal VagYM4_02530 IPR031310 Ribosomal protein L5, N-terminal VagYM4_02530 IPR020929 Ribosomal protein L5, conserved site VagYM4_02530 IPR020930 Ribosomal protein L5, bacterial-type VagYM4_02530 IPR002132 Ribosomal protein L5 VagYM4_02540 IPR018271 Ribosomal protein S14, conserved site VagYM4_02540 IPR023036 Ribosomal protein S14, bacterial/plastid VagYM4_02540 IPR001209 Ribosomal protein S14 VagYM4_02550 IPR035987 Ribosomal protein S8 superfamily VagYM4_02550 IPR000630 Ribosomal protein S8 VagYM4_02560 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily VagYM4_02560 IPR002358 Ribosomal protein L6, conserved site VagYM4_02560 IPR020040 Ribosomal protein L6, alpha-beta domain VagYM4_02560 IPR019906 Ribosomal protein L6, bacterial-type VagYM4_02560 IPR000702 Ribosomal protein L6 VagYM4_02570 IPR004389 Ribosomal protein L18, bacterial-type VagYM4_02570 IPR005484 Ribosomal protein L18 VagYM4_02580 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_02580 IPR018192 Ribosomal protein S5, N-terminal, conserved site VagYM4_02580 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_02580 IPR000851 Ribosomal protein S5 VagYM4_02580 IPR005712 Ribosomal protein S5, bacterial-type VagYM4_02580 IPR013810 Ribosomal protein S5, N-terminal VagYM4_02580 IPR005324 Ribosomal protein S5, C-terminal VagYM4_02590 IPR005996 Ribosomal protein L30, bacterial-type VagYM4_02590 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain VagYM4_02590 IPR018038 Ribosomal protein L30, conserved site VagYM4_02590 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily VagYM4_02610 IPR023201 SecY domain superfamily VagYM4_02610 IPR030659 SecY conserved site VagYM4_02610 IPR026593 Protein translocase subunit SecY VagYM4_02610 IPR002208 SecY/SEC61-alpha family VagYM4_02620 IPR000473 Ribosomal protein L36 VagYM4_02620 IPR035977 Ribosomal protein L36 superfamily VagYM4_02630 IPR019980 Ribosomal protein S13, bacterial-type VagYM4_02630 IPR027437 30s ribosomal protein S13, C-terminal VagYM4_02630 IPR001892 Ribosomal protein S13 VagYM4_02630 IPR010979 Ribosomal protein S13-like, H2TH VagYM4_02630 IPR018269 Ribosomal protein S13, conserved site VagYM4_02640 IPR019981 Ribosomal protein S11, bacterial-type VagYM4_02640 IPR001971 Ribosomal protein S11 VagYM4_02640 IPR018102 Ribosomal S11, conserved site VagYM4_02640 IPR036967 Ribosomal protein S11 superfamily VagYM4_02650 IPR001912 Ribosomal protein S4/S9, N-terminal VagYM4_02650 IPR005709 Ribosomal protein S4, bacterial-type VagYM4_02650 IPR018079 Ribosomal protein S4, conserved site VagYM4_02650 IPR022801 Ribosomal protein S4/S9 VagYM4_02650 IPR002942 RNA-binding S4 domain VagYM4_02650 IPR036986 RNA-binding S4 domain superfamily VagYM4_02660 IPR011260 RNA polymerase, alpha subunit, C-terminal VagYM4_02660 IPR036603 RNA polymerase, RBP11-like subunit VagYM4_02660 IPR036643 DNA-directed RNA polymerase, insert domain superfamily VagYM4_02660 IPR011773 DNA-directed RNA polymerase, alpha subunit VagYM4_02660 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type VagYM4_02660 IPR011262 DNA-directed RNA polymerase, insert domain VagYM4_02670 IPR036373 Ribosomal protein L17 superfamily VagYM4_02670 IPR000456 Ribosomal protein L17 VagYM4_02690 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal VagYM4_02690 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VagYM4_02690 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily VagYM4_02710 IPR016181 Acyl-CoA N-acyltransferase VagYM4_02710 IPR000182 GNAT domain VagYM4_02720 IPR028619 ATP-dependent RNA helicase DbpA VagYM4_02720 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_02720 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_02720 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_02720 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain VagYM4_02720 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VagYM4_02720 IPR001650 Helicase, C-terminal VagYM4_02720 IPR011545 DEAD/DEAH box helicase domain VagYM4_02720 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_02740 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type VagYM4_02740 IPR006179 5'-Nucleotidase/apyrase VagYM4_02740 IPR006146 5'-Nucleotidase, conserved site VagYM4_02740 IPR029052 Metallo-dependent phosphatase-like VagYM4_02740 IPR036907 5'-Nucleotidase, C-terminal domain superfamily VagYM4_02740 IPR008334 5'-Nucleotidase, C-terminal VagYM4_02740 IPR041827 CpdB, N-terminal metallophosphatase domain VagYM4_02740 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase VagYM4_02750 IPR000878 Tetrapyrrole methylase VagYM4_02750 IPR014776 Tetrapyrrole methylase, subdomain 2 VagYM4_02750 IPR006366 Uroporphyrin-III C-methyltransferase VagYM4_02750 IPR036291 NAD(P)-binding domain superfamily VagYM4_02750 IPR037115 Sirohaem synthase, dimerisation domain superfamily VagYM4_02750 IPR012409 Sirohaem synthase VagYM4_02750 IPR028281 Siroheme synthase, central domain VagYM4_02750 IPR014777 Tetrapyrrole methylase, subdomain 1 VagYM4_02750 IPR006367 Sirohaem synthase, N-terminal VagYM4_02750 IPR035996 Tetrapyrrole methylase superfamily VagYM4_02750 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site VagYM4_02750 IPR019478 Sirohaem synthase, dimerisation domain VagYM4_02760 IPR011784 Sulphate adenylyltransferase, small subunit VagYM4_02760 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_02760 IPR002500 Phosphoadenosine phosphosulphate reductase VagYM4_02770 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_02770 IPR000795 Transcription factor, GTP-binding domain VagYM4_02770 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VagYM4_02770 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_02770 IPR005225 Small GTP-binding protein domain VagYM4_02770 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain VagYM4_02770 IPR031157 Tr-type G domain, conserved site VagYM4_02770 IPR011779 Sulphate adenylyltransferase, large subunit VagYM4_02780 IPR004680 Citrate transporter-like domain VagYM4_02780 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_02780 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_02780 IPR031312 Sodium/sulphate symporter, conserved site VagYM4_02790 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_02790 IPR002891 Adenylyl-sulfate kinase VagYM4_02840 IPR017871 ABC transporter, conserved site VagYM4_02840 IPR003439 ABC transporter-like VagYM4_02840 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_02840 IPR003593 AAA+ ATPase domain VagYM4_02860 IPR019731 Protein of unknown function DUF2607 VagYM4_02870 IPR006513 Conserved hypothetical protein CHP01626, YtfJ VagYM4_02880 IPR009491 Protein of unknown function DUF1107 VagYM4_02890 IPR002569 Peptide methionine sulphoxide reductase MsrA VagYM4_02890 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily VagYM4_02900 IPR039910 Surface antigen D15-like VagYM4_02900 IPR000184 Bacterial surface antigen (D15) VagYM4_02900 IPR035243 TamA, POTRA domain 1 VagYM4_02910 IPR007452 Translocation and assembly module TamB VagYM4_02920 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like VagYM4_02920 IPR039126 Gamma-glutamylaminecyclotransferase VagYM4_02920 IPR013024 Gamma-glutamyl cyclotransferase-like VagYM4_02920 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily VagYM4_02940 IPR008162 Inorganic pyrophosphatase VagYM4_02940 IPR036649 Inorganic pyrophosphatase superfamily VagYM4_02950 IPR000146 Fructose-1,6-bisphosphatase class 1 VagYM4_02950 IPR020548 Fructose-1,6-bisphosphatase, active site VagYM4_02950 IPR028343 Fructose-1,6-bisphosphatase VagYM4_02950 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal VagYM4_02960 IPR005757 Murein peptide ligase VagYM4_02960 IPR000713 Mur ligase, N-terminal catalytic domain VagYM4_02960 IPR013221 Mur ligase, central VagYM4_02960 IPR004101 Mur ligase, C-terminal VagYM4_02960 IPR036615 Mur ligase, C-terminal domain superfamily VagYM4_02960 IPR036565 Mur-like, catalytic domain superfamily VagYM4_02970 IPR004507 Flavin prenyltransferase UbiX-like VagYM4_02970 IPR003382 Flavoprotein VagYM4_02970 IPR036551 Flavin prenyltransferase-like VagYM4_02980 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter VagYM4_02980 IPR006061 Solute-binding family 1, conserved site VagYM4_02980 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria VagYM4_02990 IPR005947 Thiamine ABC transporter, permease protein VagYM4_02990 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_02990 IPR035906 MetI-like superfamily VagYM4_03000 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ VagYM4_03000 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_03000 IPR017871 ABC transporter, conserved site VagYM4_03000 IPR003439 ABC transporter-like VagYM4_03000 IPR003593 AAA+ ATPase domain VagYM4_03010 IPR005119 LysR, substrate-binding VagYM4_03010 IPR000847 Transcription regulator HTH, LysR VagYM4_03010 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_03010 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_03020 IPR013785 Aldolase-type TIM barrel VagYM4_03020 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal VagYM4_03050 IPR011852 TRAP transporter solute receptor, TAXI family VagYM4_03060 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_03060 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_03060 IPR020900 Arginine repressor, DNA-binding domain VagYM4_03060 IPR001669 Arginine repressor VagYM4_03060 IPR020899 Arginine repressor, C-terminal VagYM4_03060 IPR036251 Arginine repressor, C-terminal domain superfamily VagYM4_03070 IPR023958 Malate dehydrogenase, type 1, bacterial VagYM4_03070 IPR010097 Malate dehydrogenase, type 1 VagYM4_03070 IPR001252 Malate dehydrogenase, active site VagYM4_03070 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal VagYM4_03070 IPR001236 Lactate/malate dehydrogenase, N-terminal VagYM4_03070 IPR022383 Lactate/malate dehydrogenase, C-terminal VagYM4_03070 IPR001557 L-lactate/malate dehydrogenase VagYM4_03070 IPR036291 NAD(P)-binding domain superfamily VagYM4_03090 IPR008949 Isoprenoid synthase domain superfamily VagYM4_03090 IPR000092 Polyprenyl synthetase VagYM4_03090 IPR033749 Polyprenyl synthetase, conserved site VagYM4_03100 IPR018258 Ribosomal protein L21, conserved site VagYM4_03100 IPR001787 Ribosomal protein L21 VagYM4_03100 IPR028909 Ribosomal protein L21-like VagYM4_03100 IPR036164 L21-like superfamily VagYM4_03110 IPR018261 Ribosomal protein L27, conserved site VagYM4_03110 IPR001684 Ribosomal protein L27 VagYM4_03120 IPR006169 GTP1/OBG domain VagYM4_03120 IPR031167 OBG-type guanine nucleotide-binding (G) domain VagYM4_03120 IPR035101 GTP-binding protein, Obg-type VagYM4_03120 IPR014100 GTP-binding protein Obg/CgtA VagYM4_03120 IPR006074 GTP1/OBG, conserved site VagYM4_03120 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_03120 IPR036726 GTP1/OBG domain superfamily VagYM4_03120 IPR006073 GTP binding domain VagYM4_03130 IPR010619 Putative threonine/serine exporter VagYM4_03140 IPR024528 Threonine/Serine exporter, ThrE VagYM4_03140 IPR020914 Uncharacterised protein family UPF0442 VagYM4_03150 IPR024072 Dihydrofolate reductase-like domain superfamily VagYM4_03150 IPR012259 Dihydrofolate reductase VagYM4_03150 IPR001796 Dihydrofolate reductase domain VagYM4_03150 IPR017925 Dihydrofolate reductase conserved site VagYM4_03160 IPR029052 Metallo-dependent phosphatase-like VagYM4_03160 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) VagYM4_03160 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type VagYM4_03170 IPR007474 ApaG domain VagYM4_03170 IPR036767 ApaG domain superfamily VagYM4_03170 IPR023065 Uncharacterised protein family ApaG VagYM4_03180 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm VagYM4_03180 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_03180 IPR011530 Ribosomal RNA adenine dimethylase VagYM4_03180 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal VagYM4_03180 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site VagYM4_03180 IPR023165 rRNA adenine dimethylase-like VagYM4_03190 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase VagYM4_03190 IPR005255 PdxA family VagYM4_03200 IPR023034 Peptidyl-prolyl isomerase SurA VagYM4_03200 IPR015391 SurA N-terminal VagYM4_03200 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type VagYM4_03200 IPR027304 Trigger factor/SurA domain superfamily VagYM4_03210 IPR005653 Organic solvent tolerance-like, N-terminal VagYM4_03210 IPR007543 LptD, C-terminal VagYM4_03210 IPR020889 LPS-assembly protein LptD VagYM4_03220 IPR023749 Co-chaperone DjlA VagYM4_03220 IPR007791 Co-chaperone DjlA, N-terminal VagYM4_03220 IPR029024 TerB-like VagYM4_03220 IPR036869 Chaperone J-domain superfamily VagYM4_03220 IPR001623 DnaJ domain VagYM4_03240 IPR004431 3-isopropylmalate dehydratase, small subunit VagYM4_03240 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel VagYM4_03240 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain VagYM4_03240 IPR033940 3-isopropylmalate dehydratase, swivel domain VagYM4_03250 IPR033941 3-Isopropylmalate dehydratase, catalytic domain VagYM4_03250 IPR036008 Aconitase, iron-sulfur domain VagYM4_03250 IPR004430 3-isopropylmalate dehydratase, large subunit VagYM4_03250 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 VagYM4_03250 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain VagYM4_03250 IPR018136 Aconitase family, 4Fe-4S cluster binding site VagYM4_03260 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site VagYM4_03260 IPR024084 Isopropylmalate dehydrogenase-like domain VagYM4_03260 IPR004429 Isopropylmalate dehydrogenase VagYM4_03270 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site VagYM4_03270 IPR000891 Pyruvate carboxyltransferase VagYM4_03270 IPR005671 2-isopropylmalate synthase, bacterial-type VagYM4_03270 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily VagYM4_03270 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain VagYM4_03270 IPR013785 Aldolase-type TIM barrel VagYM4_03290 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase VagYM4_03290 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily VagYM4_03310 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_03310 IPR005119 LysR, substrate-binding VagYM4_03310 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_03310 IPR000847 Transcription regulator HTH, LysR VagYM4_03320 IPR020845 AMP-binding, conserved site VagYM4_03320 IPR000873 AMP-dependent synthetase/ligase VagYM4_03320 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_03330 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding VagYM4_03330 IPR012846 Acetolactate synthase, large subunit, biosynthetic VagYM4_03330 IPR039368 Acetolactate synthase large subunit, TPP binding domain VagYM4_03330 IPR029035 DHS-like NAD/FAD-binding domain superfamily VagYM4_03330 IPR029061 Thiamin diphosphate-binding fold VagYM4_03330 IPR012000 Thiamine pyrophosphate enzyme, central domain VagYM4_03330 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain VagYM4_03330 IPR000399 TPP-binding enzyme, conserved site VagYM4_03340 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal VagYM4_03340 IPR004789 Acetolactate synthase, small subunit VagYM4_03340 IPR039557 AHAS, ACT domain VagYM4_03340 IPR002912 ACT domain VagYM4_03340 IPR019455 Acetolactate synthase, small subunit, C-terminal VagYM4_03350 IPR029787 Nucleotide cyclase VagYM4_03350 IPR000160 GGDEF domain VagYM4_03350 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region VagYM4_03370 IPR036918 Pyruvate kinase, C-terminal domain superfamily VagYM4_03370 IPR015806 Pyruvate kinase, insert domain superfamily VagYM4_03370 IPR015795 Pyruvate kinase, C-terminal VagYM4_03370 IPR015793 Pyruvate kinase, barrel VagYM4_03370 IPR011037 Pyruvate kinase-like, insert domain superfamily VagYM4_03370 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_03370 IPR018209 Pyruvate kinase, active site VagYM4_03370 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_03370 IPR001697 Pyruvate kinase VagYM4_03380 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_03380 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_03380 IPR014036 DeoR C-terminal sensor domain VagYM4_03380 IPR001034 DeoR-type HTH domain VagYM4_03380 IPR037171 NagB/RpiA transferase-like VagYM4_03380 IPR018356 Transcription regulator, HTH DeoR-type, conserved site VagYM4_03390 IPR035490 GlmS/FrlB, SIS domain 2 VagYM4_03390 IPR017932 Glutamine amidotransferase type 2 domain VagYM4_03390 IPR035466 GlmS/AgaS, SIS domain 1 VagYM4_03390 IPR001347 Sugar isomerase (SIS) VagYM4_03390 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_03390 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising VagYM4_03410 IPR011006 CheY-like superfamily VagYM4_03410 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_03410 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response VagYM4_03410 IPR001789 Signal transduction response regulator, receiver domain VagYM4_03410 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_03410 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_03420 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_03420 IPR005467 Histidine kinase domain VagYM4_03420 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_03420 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_03420 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_03420 IPR003660 HAMP domain VagYM4_03420 IPR006290 Heavy metal sensor kinase VagYM4_03420 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_03430 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA VagYM4_03430 IPR018211 Alcohol dehydrogenase, iron-type, conserved site VagYM4_03430 IPR016205 Glycerol dehydrogenase VagYM4_03440 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 VagYM4_03440 IPR004006 DhaK domain VagYM4_03450 IPR012737 Dihydroxyacetone kinase, subunit L VagYM4_03450 IPR004007 DhaL domain VagYM4_03450 IPR036117 DhaL domain superfamily VagYM4_03460 IPR006318 Phosphotransferase system, enzyme I-like VagYM4_03460 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_03460 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_03460 IPR024692 Phosphotransferase system, enzyme I VagYM4_03460 IPR018274 PEP-utilising enzyme, active site VagYM4_03460 IPR036637 Phosphohistidine domain superfamily VagYM4_03460 IPR023151 PEP-utilising enzyme, conserved site VagYM4_03460 IPR036618 PtsI, HPr-binding domain superfamily VagYM4_03460 IPR008731 Phosphotransferase system, enzyme I N-terminal VagYM4_03460 IPR000121 PEP-utilising enzyme, C-terminal VagYM4_03460 IPR008279 PEP-utilising enzyme, mobile domain VagYM4_03470 IPR035965 PAS domain superfamily VagYM4_03470 IPR029016 GAF-like domain superfamily VagYM4_03470 IPR003593 AAA+ ATPase domain VagYM4_03470 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_03470 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_03470 IPR000014 PAS domain VagYM4_03470 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_03470 IPR013767 PAS fold VagYM4_03470 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_03470 IPR002197 DNA binding HTH domain, Fis-type VagYM4_03470 IPR009057 Homeobox-like domain superfamily VagYM4_03480 IPR007761 Mannitol repressor MtlR-like VagYM4_03480 IPR038026 MtlR-like superfamily VagYM4_03490 IPR023028 Mannitol-1-phosphate 5-dehydrogenase VagYM4_03490 IPR013328 6-phosphogluconate dehydrogenase, domain 2 VagYM4_03490 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_03490 IPR036291 NAD(P)-binding domain superfamily VagYM4_03490 IPR000669 Mannitol dehydrogenase VagYM4_03490 IPR013118 Mannitol dehydrogenase, C-terminal VagYM4_03490 IPR013131 Mannitol dehydrogenase, N-terminal VagYM4_03490 IPR023027 Mannitol dehydrogenase, conserved site VagYM4_03500 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC VagYM4_03500 IPR003501 Phosphotransferase system, EIIB component, type 2/3 VagYM4_03500 IPR016152 Phosphotransferase/anion transporter VagYM4_03500 IPR013014 Phosphotransferase system, EIIC component, type 2 VagYM4_03500 IPR002178 PTS EIIA type-2 domain VagYM4_03500 IPR013011 Phosphotransferase system, EIIB component, type 2 VagYM4_03500 IPR029503 Phosphotransferase system EIIB component, mannitol-specific VagYM4_03500 IPR036095 PTS system IIB component-like superfamily VagYM4_03500 IPR003352 Phosphotransferase system, EIIC VagYM4_03560 IPR004872 Lipoprotein NlpA family VagYM4_03570 IPR014284 RNA polymerase sigma-70 like domain VagYM4_03570 IPR000943 RNA polymerase sigma-70 VagYM4_03570 IPR007631 RNA polymerase sigma factor 70, non-essential domain VagYM4_03570 IPR012760 RNA polymerase sigma factor RpoD, C-terminal VagYM4_03570 IPR009042 RNA polymerase sigma-70 region 1.2 VagYM4_03570 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_03570 IPR007624 RNA polymerase sigma-70 region 3 VagYM4_03570 IPR007630 RNA polymerase sigma-70 region 4 VagYM4_03570 IPR007127 RNA polymerase sigma factor 70, region 1.1 VagYM4_03570 IPR042189 Sigma-70 factor, region 1.1 superfamily VagYM4_03570 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_03570 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_03570 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_03570 IPR028630 RNA polymerase sigma factor RpoD VagYM4_03580 IPR006171 TOPRIM domain VagYM4_03580 IPR034151 Bacterial DnaG primase, TOPRIM domain VagYM4_03580 IPR030846 DNA primase DnaG, bacteria VagYM4_03580 IPR036977 DNA Primase, CHC2-type zinc finger VagYM4_03580 IPR013173 DNA primase DnaG, DnaB-binding domain VagYM4_03580 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily VagYM4_03580 IPR013264 DNA primase, catalytic core, N-terminal VagYM4_03580 IPR006295 DNA primase, DnaG VagYM4_03580 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal VagYM4_03580 IPR019475 DNA primase, DnaB-helicase binding domain VagYM4_03580 IPR002694 Zinc finger, CHC2-type VagYM4_03590 IPR019004 Uncharacterised protein YqeY/Aim41 VagYM4_03590 IPR042184 YqeY/Aim41, N-terminal domain VagYM4_03590 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like VagYM4_03590 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 VagYM4_03600 IPR018278 Ribosomal protein S21, conserved site VagYM4_03600 IPR001911 Ribosomal protein S21 VagYM4_03600 IPR038380 Ribosomal protein S21 superfamily VagYM4_03610 IPR000905 Gcp-like domain VagYM4_03610 IPR017860 Peptidase M22, conserved site VagYM4_03610 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD VagYM4_03610 IPR017861 Kae1/TsaD family VagYM4_03620 IPR019913 Pyrimidine utilisation protein RutD VagYM4_03620 IPR029058 Alpha/Beta hydrolase fold VagYM4_03620 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_03630 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY VagYM4_03640 IPR006156 Dihydroneopterin aldolase VagYM4_03640 IPR006157 Dihydroneopterin aldolase/epimerase domain VagYM4_03650 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK VagYM4_03650 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily VagYM4_03660 IPR003824 Undecaprenyl-diphosphatase UppP VagYM4_03670 IPR012006 tRNA nucleotidyltransferase, proteobacteria VagYM4_03670 IPR002646 Poly A polymerase, head domain VagYM4_03670 IPR006674 HD domain VagYM4_03670 IPR003607 HD/PDEase domain VagYM4_03670 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain VagYM4_03680 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_03680 IPR002477 Peptidoglycan binding-like VagYM4_03680 IPR036365 PGBD-like superfamily VagYM4_03680 IPR003593 AAA+ ATPase domain VagYM4_03680 IPR036366 PGBD superfamily VagYM4_03700 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_03700 IPR000101 Gamma-glutamyltranspeptidase VagYM4_03710 IPR016476 SH3 domain protein VagYM4_03710 IPR003646 SH3-like domain, bacterial-type VagYM4_03720 IPR001204 Phosphate transporter VagYM4_03730 IPR038078 PhoU-like domain superfamily VagYM4_03730 IPR018445 Putative phosphate transport regulator VagYM4_03730 IPR002727 Protein of unknown function DUF47 VagYM4_03740 IPR023577 CYTH domain VagYM4_03740 IPR007899 CHAD domain VagYM4_03740 IPR033469 CYTH-like domain superfamily VagYM4_03740 IPR039013 Inorganic triphosphatase YgiF VagYM4_03760 IPR033479 Double Cache domain 1 VagYM4_03760 IPR003660 HAMP domain VagYM4_03760 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_03760 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_03770 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase VagYM4_03770 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme VagYM4_03770 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain VagYM4_03780 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_03780 IPR029056 Ribokinase-like VagYM4_03780 IPR011914 RfaE bifunctional protein, domain II VagYM4_03780 IPR023030 Bifunctional protein HldE VagYM4_03780 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site VagYM4_03780 IPR004821 Cytidyltransferase-like domain VagYM4_03780 IPR011611 Carbohydrate kinase PfkB VagYM4_03780 IPR011913 RfaE bifunctional protein, domain I VagYM4_03790 IPR003423 Outer membrane efflux protein VagYM4_03790 IPR010130 Type I secretion outer membrane protein, TolC VagYM4_03800 IPR020084 NUDIX hydrolase, conserved site VagYM4_03800 IPR004385 Nucleoside diphosphate pyrophosphatase VagYM4_03800 IPR000086 NUDIX hydrolase domain VagYM4_03800 IPR015797 NUDIX hydrolase-like domain superfamily VagYM4_03810 IPR009659 Protein of unknown function DUF1249 VagYM4_03820 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type VagYM4_03820 IPR029052 Metallo-dependent phosphatase-like VagYM4_03820 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA VagYM4_03830 IPR029058 Alpha/Beta hydrolase fold VagYM4_03830 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA VagYM4_03840 IPR002288 DNA gyrase B subunit, C-terminal VagYM4_03840 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_03840 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_03840 IPR006171 TOPRIM domain VagYM4_03840 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative VagYM4_03840 IPR018522 DNA topoisomerase, type IIA, conserved site VagYM4_03840 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 VagYM4_03840 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_03840 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_03840 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal VagYM4_03840 IPR001241 DNA topoisomerase, type IIA VagYM4_03840 IPR013760 DNA topoisomerase, type IIA-like domain superfamily VagYM4_03850 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta VagYM4_03850 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VagYM4_03850 IPR013760 DNA topoisomerase, type IIA-like domain superfamily VagYM4_03850 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal VagYM4_03850 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat VagYM4_03850 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative VagYM4_03850 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily VagYM4_03860 IPR001478 PDZ domain VagYM4_03860 IPR011783 Peptidase S1C, DegS VagYM4_03860 IPR036034 PDZ superfamily VagYM4_03860 IPR001940 Peptidase S1C VagYM4_03860 IPR009003 Peptidase S1, PA clan VagYM4_03870 IPR036034 PDZ superfamily VagYM4_03870 IPR001940 Peptidase S1C VagYM4_03870 IPR009003 Peptidase S1, PA clan VagYM4_03870 IPR001478 PDZ domain VagYM4_03870 IPR011782 Peptidase S1C, Do VagYM4_03880 IPR009386 Protein of unknown function DUF1043 VagYM4_03890 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_03890 IPR005654 ATPase, AFG1-like VagYM4_03890 IPR030870 Cell division protein ZapE VagYM4_03900 IPR005823 Ribosomal protein L13, bacterial-type VagYM4_03900 IPR023563 Ribosomal protein L13, conserved site VagYM4_03900 IPR036899 Ribosomal protein L13 superfamily VagYM4_03900 IPR005822 Ribosomal protein L13 VagYM4_03910 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_03910 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_03910 IPR000754 Ribosomal protein S9 VagYM4_03910 IPR023035 Ribosomal protein S9, bacterial/plastid VagYM4_03910 IPR020574 Ribosomal protein S9, conserved site VagYM4_03920 IPR017941 Rieske [2Fe-2S] iron-sulphur domain VagYM4_03920 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily VagYM4_03920 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal VagYM4_03920 IPR014349 Rieske iron-sulphur protein VagYM4_03920 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit VagYM4_03920 IPR005805 Rieske iron-sulphur protein, C-terminal VagYM4_03930 IPR016174 Di-haem cytochrome, transmembrane VagYM4_03930 IPR030689 Cytochrome b VagYM4_03930 IPR027387 Cytochrome b/b6-like domain superfamily VagYM4_03930 IPR005797 Cytochrome b/b6, N-terminal VagYM4_03930 IPR036150 Cytochrome b/b6, C-terminal domain superfamily VagYM4_03930 IPR005798 Cytochrome b/b6, C-terminal VagYM4_03940 IPR009056 Cytochrome c-like domain VagYM4_03940 IPR002326 Cytochrome c1 VagYM4_03940 IPR036909 Cytochrome c-like domain superfamily VagYM4_03950 IPR036249 Thioredoxin-like superfamily VagYM4_03950 IPR040079 Glutathione Transferase family VagYM4_03950 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VagYM4_03950 IPR010987 Glutathione S-transferase, C-terminal-like VagYM4_03950 IPR034341 Stringent starvation protein A, N-terminal VagYM4_03950 IPR004045 Glutathione S-transferase, N-terminal VagYM4_03950 IPR004046 Glutathione S-transferase, C-terminal VagYM4_03960 IPR007481 Stringent starvation protein B VagYM4_03960 IPR036760 SspB-like superfamily VagYM4_03970 IPR014004 Transport-associated and nodulation domain, bacteria VagYM4_03970 IPR007055 BON domain VagYM4_03980 IPR035461 GmhA/DiaA VagYM4_03980 IPR023070 DnaA initiator-associating protein VagYM4_03980 IPR001347 Sugar isomerase (SIS) VagYM4_03990 IPR003509 Uncharacterised protein family UPF0102 VagYM4_03990 IPR011856 tRNA endonuclease-like domain superfamily VagYM4_03990 IPR011335 Restriction endonuclease type II-like VagYM4_04000 IPR028082 Periplasmic binding protein-like I VagYM4_04000 IPR007443 Penicillin-binding protein activator LpoA VagYM4_04000 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_04010 IPR000878 Tetrapyrrole methylase VagYM4_04010 IPR018063 SAM-dependent methyltransferase RsmI, conserved site VagYM4_04010 IPR008189 rRNA small subunit methyltransferase I VagYM4_04010 IPR014776 Tetrapyrrole methylase, subdomain 2 VagYM4_04010 IPR014777 Tetrapyrrole methylase, subdomain 1 VagYM4_04010 IPR035996 Tetrapyrrole methylase superfamily VagYM4_04020 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily VagYM4_04020 IPR002903 Ribosomal RNA small subunit methyltransferase H VagYM4_04020 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_04030 IPR011922 Cell division protein FtsL VagYM4_04040 IPR001460 Penicillin-binding protein, transpeptidase VagYM4_04040 IPR036138 Penicillin-binding protein, dimerisation domain superfamily VagYM4_04040 IPR005311 Penicillin-binding protein, dimerisation domain VagYM4_04040 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_04040 IPR037532 Peptidoglycan D,D-transpeptidase FtsI VagYM4_04050 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase VagYM4_04050 IPR000713 Mur ligase, N-terminal catalytic domain VagYM4_04050 IPR013221 Mur ligase, central VagYM4_04050 IPR035911 MurE/MurF, N-terminal VagYM4_04050 IPR036615 Mur ligase, C-terminal domain superfamily VagYM4_04050 IPR004101 Mur ligase, C-terminal VagYM4_04050 IPR036565 Mur-like, catalytic domain superfamily VagYM4_04060 IPR013221 Mur ligase, central VagYM4_04060 IPR000713 Mur ligase, N-terminal catalytic domain VagYM4_04060 IPR036615 Mur ligase, C-terminal domain superfamily VagYM4_04060 IPR004101 Mur ligase, C-terminal VagYM4_04060 IPR036565 Mur-like, catalytic domain superfamily VagYM4_04060 IPR035911 MurE/MurF, N-terminal VagYM4_04060 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase VagYM4_04070 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site VagYM4_04070 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase VagYM4_04070 IPR000715 Glycosyl transferase, family 4 VagYM4_04080 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase VagYM4_04080 IPR036615 Mur ligase, C-terminal domain superfamily VagYM4_04080 IPR004101 Mur ligase, C-terminal VagYM4_04080 IPR013221 Mur ligase, central VagYM4_04080 IPR036565 Mur-like, catalytic domain superfamily VagYM4_04090 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site VagYM4_04090 IPR013437 Probable peptidoglycan glycosyltransferase FtsW VagYM4_04090 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA VagYM4_04100 IPR004276 Glycosyltransferase family 28, N-terminal domain VagYM4_04100 IPR006009 N-acetylglucosaminyltransferase, MurG VagYM4_04100 IPR007235 Glycosyl transferase, family 28, C-terminal VagYM4_04110 IPR013221 Mur ligase, central VagYM4_04110 IPR004101 Mur ligase, C-terminal VagYM4_04110 IPR036615 Mur ligase, C-terminal domain superfamily VagYM4_04110 IPR000713 Mur ligase, N-terminal catalytic domain VagYM4_04110 IPR036565 Mur-like, catalytic domain superfamily VagYM4_04110 IPR005758 UDP-N-acetylmuramate--L-alanine ligase VagYM4_04120 IPR013685 POTRA domain, FtsQ-type VagYM4_04120 IPR005548 Cell division protein FtsQ/DivIB VagYM4_04120 IPR026579 Cell division protein FtsQ VagYM4_04120 IPR034746 POTRA domain VagYM4_04130 IPR003494 SHS2 domain inserted in FtsA VagYM4_04130 IPR020823 Cell division protein FtsA VagYM4_04140 IPR020805 Cell division protein FtsZ, conserved site VagYM4_04140 IPR024757 Cell division protein FtsZ, C-terminal VagYM4_04140 IPR008280 Tubulin/FtsZ, C-terminal VagYM4_04140 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain VagYM4_04140 IPR003008 Tubulin/FtsZ, GTPase domain VagYM4_04140 IPR036525 Tubulin/FtsZ, GTPase domain superfamily VagYM4_04140 IPR000158 Cell division protein FtsZ VagYM4_04150 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase VagYM4_04150 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_04150 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal VagYM4_04150 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal VagYM4_04170 IPR036266 SecA, Wing/Scaffold superfamily VagYM4_04170 IPR011130 SecA, preprotein cross-linking domain VagYM4_04170 IPR011116 SecA Wing/Scaffold VagYM4_04170 IPR014018 SecA motor DEAD VagYM4_04170 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_04170 IPR004027 SEC-C motif VagYM4_04170 IPR000185 Protein translocase subunit SecA VagYM4_04170 IPR020937 SecA conserved site VagYM4_04170 IPR011115 SecA DEAD-like, N-terminal VagYM4_04170 IPR036670 SecA, preprotein cross-linking domain superfamily VagYM4_04180 IPR020476 NUDIX hydrolase VagYM4_04180 IPR015797 NUDIX hydrolase-like domain superfamily VagYM4_04180 IPR020084 NUDIX hydrolase, conserved site VagYM4_04180 IPR000086 NUDIX hydrolase domain VagYM4_04180 IPR003561 Mutator MutT VagYM4_04190 IPR022664 Dihydrodipicolinate reductase, conserved site VagYM4_04190 IPR023940 Dihydrodipicolinate reductase VagYM4_04190 IPR000846 Dihydrodipicolinate reductase, N-terminal VagYM4_04190 IPR036291 NAD(P)-binding domain superfamily VagYM4_04190 IPR022663 Dihydrodipicolinate reductase, C-terminal VagYM4_04210 IPR029062 Class I glutamine amidotransferase-like VagYM4_04210 IPR017926 Glutamine amidotransferase VagYM4_04210 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain VagYM4_04210 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain VagYM4_04210 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily VagYM4_04210 IPR006274 Carbamoyl-phosphate synthase, small subunit VagYM4_04220 IPR011761 ATP-grasp fold VagYM4_04220 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain VagYM4_04220 IPR036914 Methylglyoxal synthase-like domain superfamily VagYM4_04220 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain VagYM4_04220 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain VagYM4_04220 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily VagYM4_04220 IPR006275 Carbamoyl-phosphate synthase, large subunit VagYM4_04220 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_04220 IPR011607 Methylglyoxal synthase-like domain VagYM4_04220 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain VagYM4_04250 IPR002781 Transmembrane protein TauE-like VagYM4_04260 IPR000847 Transcription regulator HTH, LysR VagYM4_04260 IPR005119 LysR, substrate-binding VagYM4_04260 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_04260 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_04270 IPR005115 Uncharacterised domain UPF0126 VagYM4_04280 IPR023544 ABC transporter, vitamin B12-binding protein VagYM4_04280 IPR002491 ABC transporter periplasmic binding domain VagYM4_04290 IPR031347 Protein AmpE VagYM4_04290 IPR004485 Cobalamin biosynthesis CobD/CbiB VagYM4_04300 IPR000845 Nucleoside phosphorylase domain VagYM4_04300 IPR010049 MTA/SAH nucleosidase VagYM4_04300 IPR035994 Nucleoside phosphorylase superfamily VagYM4_04320 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 VagYM4_04320 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_04320 IPR023753 FAD/NAD(P)-binding domain VagYM4_04320 IPR028261 Dihydroprymidine dehydrogenase domain II VagYM4_04320 IPR009051 Alpha-helical ferredoxin VagYM4_04320 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_04330 IPR002932 Glutamate synthase domain VagYM4_04330 IPR002489 Glutamate synthase, alpha subunit, C-terminal VagYM4_04330 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_04330 IPR013785 Aldolase-type TIM barrel VagYM4_04330 IPR006982 Glutamate synthase, central-N VagYM4_04330 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily VagYM4_04330 IPR017932 Glutamine amidotransferase type 2 domain VagYM4_04340 IPR028261 Dihydroprymidine dehydrogenase domain II VagYM4_04340 IPR009051 Alpha-helical ferredoxin VagYM4_04340 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 VagYM4_04340 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_04340 IPR023753 FAD/NAD(P)-binding domain VagYM4_04350 IPR006982 Glutamate synthase, central-N VagYM4_04350 IPR002932 Glutamate synthase domain VagYM4_04350 IPR002489 Glutamate synthase, alpha subunit, C-terminal VagYM4_04350 IPR017932 Glutamine amidotransferase type 2 domain VagYM4_04350 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_04350 IPR013785 Aldolase-type TIM barrel VagYM4_04350 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily VagYM4_04360 IPR005911 Protein YhcC-like VagYM4_04360 IPR023404 Radical SAM, alpha/beta horseshoe VagYM4_04360 IPR007197 Radical SAM VagYM4_04360 IPR032432 Radical SAM, C-terminal extension VagYM4_04360 IPR039661 ELP3/YhcC VagYM4_04360 IPR006638 Elp3/MiaB/NifB VagYM4_04370 IPR013515 Phytochrome, central region VagYM4_04370 IPR000160 GGDEF domain VagYM4_04370 IPR029016 GAF-like domain superfamily VagYM4_04370 IPR035919 EAL domain superfamily VagYM4_04370 IPR001633 EAL domain VagYM4_04370 IPR001294 Phytochrome VagYM4_04370 IPR029787 Nucleotide cyclase VagYM4_04370 IPR016132 Phytochrome chromophore attachment domain VagYM4_04370 IPR003018 GAF domain VagYM4_04380 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily VagYM4_04380 IPR000700 PAS-associated, C-terminal VagYM4_04380 IPR036641 HPT domain superfamily VagYM4_04380 IPR040642 Histidine kinase receptor ArcB, transmembrane domain VagYM4_04380 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_04380 IPR013767 PAS fold VagYM4_04380 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_04380 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_04380 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_04380 IPR005467 Histidine kinase domain VagYM4_04380 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_04380 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_04380 IPR011006 CheY-like superfamily VagYM4_04380 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB VagYM4_04380 IPR001789 Signal transduction response regulator, receiver domain VagYM4_04380 IPR035965 PAS domain superfamily VagYM4_04380 IPR000014 PAS domain VagYM4_04400 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_04400 IPR001789 Signal transduction response regulator, receiver domain VagYM4_04400 IPR011006 CheY-like superfamily VagYM4_04400 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_04400 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_04400 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_04420 IPR010203 Regulator of ribonuclease activity A VagYM4_04420 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily VagYM4_04420 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein VagYM4_04440 IPR001341 Aspartate kinase VagYM4_04440 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_04440 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding VagYM4_04440 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain VagYM4_04440 IPR002912 ACT domain VagYM4_04440 IPR036291 NAD(P)-binding domain superfamily VagYM4_04440 IPR019811 Homoserine dehydrogenase, conserved site VagYM4_04440 IPR001342 Homoserine dehydrogenase, catalytic VagYM4_04440 IPR027795 CASTOR, ACT domain VagYM4_04440 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I VagYM4_04440 IPR018042 Aspartate kinase, conserved site VagYM4_04440 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_04450 IPR000870 Homoserine kinase VagYM4_04450 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_04450 IPR036554 GHMP kinase, C-terminal domain superfamily VagYM4_04450 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_04450 IPR006204 GHMP kinase N-terminal domain VagYM4_04450 IPR006203 GHMP kinase, ATP-binding, conserved site VagYM4_04450 IPR013750 GHMP kinase, C-terminal domain VagYM4_04460 IPR004450 Threonine synthase-like VagYM4_04460 IPR037158 Threonine synthase, N-terminal domain superfamily VagYM4_04460 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VagYM4_04460 IPR029144 Threonine synthase, N-terminal VagYM4_04460 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site VagYM4_04460 IPR001926 Pyridoxal-phosphate dependent enzyme VagYM4_04480 IPR011140 Autonomous glycyl radical cofactor GrcA VagYM4_04480 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VagYM4_04480 IPR001150 Glycine radical domain VagYM4_04490 IPR036237 Xylose isomerase-like superfamily VagYM4_04490 IPR018246 AP endonuclease 2, zinc binding site VagYM4_04490 IPR013022 Xylose isomerase-like, TIM barrel domain VagYM4_04490 IPR001719 AP endonuclease 2 VagYM4_04500 IPR036895 Uracil-DNA glycosylase-like domain superfamily VagYM4_04500 IPR005122 Uracil-DNA glycosylase-like VagYM4_04500 IPR018085 Uracil-DNA glycosylase, active site VagYM4_04500 IPR002043 Uracil-DNA glycosylase family 1 VagYM4_04530 IPR001463 Sodium:alanine symporter VagYM4_04540 IPR005583 Peroxide stress protein YaaA VagYM4_04550 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_04550 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_04550 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_04550 IPR001650 Helicase, C-terminal VagYM4_04550 IPR011545 DEAD/DEAH box helicase domain VagYM4_04550 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_04550 IPR028621 ATP-dependent RNA helicase SrmB VagYM4_04560 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_04560 IPR007848 Methyltransferase small domain VagYM4_04560 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_04560 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase VagYM4_04570 IPR004685 Branched-chain amino acid transport system II carrier protein VagYM4_04580 IPR008254 Flavodoxin/nitric oxide synthase VagYM4_04580 IPR001226 Flavodoxin, conserved site VagYM4_04580 IPR010086 Flavodoxin, long chain VagYM4_04580 IPR029039 Flavoprotein-like superfamily VagYM4_04590 IPR023009 Tyrosine recombinase XerC/XerD VagYM4_04590 IPR011932 Tyrosine recombinase XerD VagYM4_04590 IPR004107 Integrase, SAM-like, N-terminal VagYM4_04590 IPR010998 Integrase/recombinase, N-terminal VagYM4_04590 IPR002104 Integrase, catalytic domain VagYM4_04590 IPR013762 Integrase-like, catalytic domain superfamily VagYM4_04590 IPR011010 DNA breaking-rejoining enzyme, catalytic core VagYM4_04600 IPR036249 Thioredoxin-like superfamily VagYM4_04600 IPR033954 Disulphide bond isomerase, DsbC/G VagYM4_04600 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal VagYM4_04600 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily VagYM4_04600 IPR012336 Thioredoxin-like fold VagYM4_04600 IPR017937 Thioredoxin, conserved site VagYM4_04600 IPR013766 Thioredoxin domain VagYM4_04610 IPR041122 RecJ, OB domain VagYM4_04610 IPR001667 DDH domain VagYM4_04610 IPR038763 DHH phosphoesterase superfamily VagYM4_04610 IPR003156 DHHA1 domain VagYM4_04610 IPR004610 Bacterial RecJ exonuclease VagYM4_04620 IPR005139 Peptide chain release factor VagYM4_04620 IPR004374 Peptide chain release factor 2 VagYM4_04620 IPR000352 Peptide chain release factor class I VagYM4_04630 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal VagYM4_04630 IPR002313 Lysine-tRNA ligase, class II VagYM4_04630 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_04630 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) VagYM4_04630 IPR012340 Nucleic acid-binding, OB-fold VagYM4_04630 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type VagYM4_04640 IPR003593 AAA+ ATPase domain VagYM4_04640 IPR011006 CheY-like superfamily VagYM4_04640 IPR009057 Homeobox-like domain superfamily VagYM4_04640 IPR002197 DNA binding HTH domain, Fis-type VagYM4_04640 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_04640 IPR001789 Signal transduction response regulator, receiver domain VagYM4_04640 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_04640 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_04640 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_04640 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_04670 IPR023210 NADP-dependent oxidoreductase domain VagYM4_04670 IPR020471 Aldo/keto reductase VagYM4_04670 IPR036812 NADP-dependent oxidoreductase domain superfamily VagYM4_04690 IPR011335 Restriction endonuclease type II-like VagYM4_04690 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily VagYM4_04690 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II VagYM4_04690 IPR004230 DNA mismatch repair protein MutH VagYM4_04700 IPR020476 NUDIX hydrolase VagYM4_04700 IPR015797 NUDIX hydrolase-like domain superfamily VagYM4_04700 IPR022927 RNA pyrophosphohydrolase RppH VagYM4_04700 IPR000086 NUDIX hydrolase domain VagYM4_04700 IPR020084 NUDIX hydrolase, conserved site VagYM4_04710 IPR008279 PEP-utilising enzyme, mobile domain VagYM4_04710 IPR018274 PEP-utilising enzyme, active site VagYM4_04710 IPR000121 PEP-utilising enzyme, C-terminal VagYM4_04710 IPR023151 PEP-utilising enzyme, conserved site VagYM4_04710 IPR036637 Phosphohistidine domain superfamily VagYM4_04710 IPR006318 Phosphotransferase system, enzyme I-like VagYM4_04710 IPR008731 Phosphotransferase system, enzyme I N-terminal VagYM4_04710 IPR036618 PtsI, HPr-binding domain superfamily VagYM4_04710 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_04710 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_04710 IPR029016 GAF-like domain superfamily VagYM4_04710 IPR003018 GAF domain VagYM4_04720 IPR002781 Transmembrane protein TauE-like VagYM4_04740 IPR020940 Thymidylate synthase, active site VagYM4_04740 IPR000398 Thymidylate synthase VagYM4_04740 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily VagYM4_04740 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain VagYM4_04760 IPR003841 Sodium-dependent phosphate transport protein VagYM4_04760 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein VagYM4_04770 IPR000847 Transcription regulator HTH, LysR VagYM4_04770 IPR005119 LysR, substrate-binding VagYM4_04770 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_04770 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_04780 IPR001845 HTH ArsR-type DNA-binding domain VagYM4_04780 IPR011991 ArsR-like helix-turn-helix domain VagYM4_04780 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_04780 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_04790 IPR036510 Ribosomal protein S20 superfamily VagYM4_04790 IPR002583 Ribosomal protein S20 VagYM4_04800 IPR004268 Peptidoglycan biosynthesis protein MurJ VagYM4_04810 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_04810 IPR023468 Riboflavin kinase VagYM4_04810 IPR023465 Riboflavin kinase domain superfamily VagYM4_04810 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic VagYM4_04810 IPR015864 FAD synthetase VagYM4_04810 IPR002606 Riboflavin kinase, bacterial VagYM4_04820 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_04820 IPR010663 Zinc finger, FPG/IleRS-type VagYM4_04820 IPR002300 Aminoacyl-tRNA synthetase, class Ia VagYM4_04820 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_04820 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain VagYM4_04820 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain VagYM4_04820 IPR002301 Isoleucine-tRNA ligase VagYM4_04820 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding VagYM4_04820 IPR023585 Isoleucine-tRNA ligase, type 1 VagYM4_04820 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding VagYM4_04830 IPR001872 Peptidase A8, signal peptidase II VagYM4_04840 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VagYM4_04850 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase VagYM4_04860 IPR009057 Homeobox-like domain superfamily VagYM4_04860 IPR002514 Transposase IS3/IS911family VagYM4_04870 IPR036397 Ribonuclease H superfamily VagYM4_04870 IPR012337 Ribonuclease H-like superfamily VagYM4_04870 IPR001584 Integrase, catalytic core VagYM4_04870 IPR038965 Transposase InsF-like VagYM4_04890 IPR007492 LytTR DNA-binding domain VagYM4_04890 IPR001789 Signal transduction response regulator, receiver domain VagYM4_04890 IPR011006 CheY-like superfamily VagYM4_04900 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region VagYM4_04900 IPR010559 Signal transduction histidine kinase, internal region VagYM4_04900 IPR003018 GAF domain VagYM4_04900 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_04910 IPR003706 CstA, N-terminal domain VagYM4_04940 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein VagYM4_04940 IPR001347 Sugar isomerase (SIS) VagYM4_04940 IPR005486 Glucokinase regulatory protein, conserved site VagYM4_04940 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ VagYM4_04950 IPR005338 Anhydro-N-acetylmuramic acid kinase VagYM4_04960 IPR017853 Glycoside hydrolase superfamily VagYM4_04960 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily VagYM4_04960 IPR001764 Glycoside hydrolase, family 3, N-terminal VagYM4_04960 IPR019800 Glycoside hydrolase, family 3, active site VagYM4_04960 IPR022956 Beta-hexosaminidase, bacterial VagYM4_04970 IPR006219 DHAP synthase, class 1 VagYM4_04970 IPR006218 DAHP synthetase I/KDSA VagYM4_04970 IPR013785 Aldolase-type TIM barrel VagYM4_04980 IPR036291 NAD(P)-binding domain superfamily VagYM4_04980 IPR036979 Chorismate mutase domain superfamily VagYM4_04980 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_04980 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein VagYM4_04980 IPR002701 Chorismate mutase II, prokaryotic-type VagYM4_04980 IPR011277 Chorismate mutase, T-protein VagYM4_04980 IPR036263 Chorismate mutase type II superfamily VagYM4_04980 IPR003099 Prephenate dehydrogenase VagYM4_04990 IPR010090 Phage tail tape measure protein VagYM4_04990 IPR016047 Peptidase M23 VagYM4_04990 IPR011055 Duplicated hybrid motif VagYM4_04990 IPR023346 Lysozyme-like domain superfamily VagYM4_04990 IPR000189 Prokaryotic transglycosylase, active site VagYM4_04990 IPR008258 Transglycosylase SLT domain 1 VagYM4_05000 IPR009875 PilZ domain VagYM4_05000 IPR027021 Cyclic di-GMP binding protein, PA4608 type VagYM4_05010 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_05010 IPR003593 AAA+ ATPase domain VagYM4_05010 IPR017871 ABC transporter, conserved site VagYM4_05010 IPR022374 Energy-dependent translational throttle protein EttA VagYM4_05010 IPR003439 ABC transporter-like VagYM4_05010 IPR032781 ABC-transporter extension domain VagYM4_05020 IPR012289 Lytic transglycosylase, superhelical linker VagYM4_05020 IPR008939 Lytic transglycosylase, superhelical U-shaped VagYM4_05020 IPR008258 Transglycosylase SLT domain 1 VagYM4_05020 IPR000189 Prokaryotic transglycosylase, active site VagYM4_05020 IPR023346 Lysozyme-like domain superfamily VagYM4_05020 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily VagYM4_05030 IPR013335 Trp repressor, bacterial VagYM4_05030 IPR038116 TrpR-like superfamily VagYM4_05030 IPR000831 Trp repressor VagYM4_05030 IPR010921 Trp repressor/replication initiator VagYM4_05040 IPR002786 Inosine/xanthosine triphosphatase VagYM4_05040 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 VagYM4_05040 IPR029001 Inosine triphosphate pyrophosphatase-like VagYM4_05050 IPR002912 ACT domain VagYM4_05050 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase VagYM4_05050 IPR036263 Chorismate mutase type II superfamily VagYM4_05050 IPR018528 Prephenate dehydratase, conserved site VagYM4_05050 IPR001086 Prephenate dehydratase VagYM4_05050 IPR010952 Chorismate mutase, gammaproteobacteria VagYM4_05050 IPR002701 Chorismate mutase II, prokaryotic-type VagYM4_05050 IPR036979 Chorismate mutase domain superfamily VagYM4_05060 IPR036567 Ribosome hibernation promotion factor-like VagYM4_05060 IPR003489 Ribosome hibernation promoting factor/RaiA VagYM4_05070 IPR023346 Lysozyme-like domain superfamily VagYM4_05070 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_05070 IPR008258 Transglycosylase SLT domain 1 VagYM4_05070 IPR023703 Membrane-bound lytic murein transglycosylase F VagYM4_05070 IPR000189 Prokaryotic transglycosylase, active site VagYM4_05080 IPR017689 Outer membrane protein assembly factor BamD VagYM4_05080 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_05080 IPR039565 Outer membrane lipoprotein BamD-like VagYM4_05090 IPR036986 RNA-binding S4 domain superfamily VagYM4_05090 IPR002942 RNA-binding S4 domain VagYM4_05090 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_05090 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_05090 IPR006225 Pseudouridine synthase, RluC/RluD VagYM4_05090 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site VagYM4_05110 IPR028299 ClpA/B, conserved site 2 VagYM4_05110 IPR003593 AAA+ ATPase domain VagYM4_05110 IPR018368 ClpA/B, conserved site 1 VagYM4_05110 IPR003959 ATPase, AAA-type, core VagYM4_05110 IPR017730 Chaperonin ClpB VagYM4_05110 IPR019489 Clp ATPase, C-terminal VagYM4_05110 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_05110 IPR036628 Clp, N-terminal domain superfamily VagYM4_05110 IPR004176 Clp, N-terminal VagYM4_05110 IPR001270 ClpA/B family VagYM4_05110 IPR041546 ClpA/ClpB, AAA lid domain VagYM4_05130 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily VagYM4_05130 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase VagYM4_05150 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_05150 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_05170 IPR007476 Putative exonuclease, RdgC VagYM4_05180 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_05180 IPR011006 CheY-like superfamily VagYM4_05180 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_05180 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_05180 IPR001789 Signal transduction response regulator, receiver domain VagYM4_05180 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB VagYM4_05190 IPR035965 PAS domain superfamily VagYM4_05190 IPR013767 PAS fold VagYM4_05190 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_05190 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_05190 IPR005467 Histidine kinase domain VagYM4_05190 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_05190 IPR021766 Phosphate regulon sensor protein PhoR VagYM4_05190 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_05190 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR VagYM4_05190 IPR000014 PAS domain VagYM4_05190 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_05200 IPR011862 Phosphate binding protein VagYM4_05200 IPR024370 PBP domain VagYM4_05210 IPR003695 Ppx/GppA phosphatase VagYM4_05210 IPR030673 Pyrophosphatase, GppA/Ppx-type VagYM4_05210 IPR022371 Exopolyphosphatase VagYM4_05220 IPR025198 Polyphosphate kinase N-terminal domain VagYM4_05220 IPR024953 Polyphosphate kinase middle domain VagYM4_05220 IPR001736 Phospholipase D/Transphosphatidylase VagYM4_05220 IPR036830 Polyphosphate kinase middle domain superfamily VagYM4_05220 IPR025200 Polyphosphate kinase C-terminal domain 2 VagYM4_05220 IPR041108 Polyphosphate kinase, C-terminal domain 1 VagYM4_05220 IPR036832 Polyphosphate kinase N-terminal domain superfamily VagYM4_05220 IPR003414 Polyphosphate kinase VagYM4_05230 IPR035906 MetI-like superfamily VagYM4_05230 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_05230 IPR011864 Phosphate ABC transporter, permease protein PstC VagYM4_05240 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_05240 IPR035906 MetI-like superfamily VagYM4_05240 IPR005672 Phosphate transport system permease protein PstA VagYM4_05250 IPR003593 AAA+ ATPase domain VagYM4_05250 IPR003439 ABC transporter-like VagYM4_05250 IPR017871 ABC transporter, conserved site VagYM4_05250 IPR015850 ABC transporter, phosphate import, PstB VagYM4_05250 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_05250 IPR005670 Phosphate transport system permease protein 1 VagYM4_05260 IPR026022 PhoU domain VagYM4_05260 IPR038078 PhoU-like domain superfamily VagYM4_05260 IPR028366 Phosphate transport system protein PhoU VagYM4_05270 IPR016898 Polyphosphate kinase 2 VagYM4_05270 IPR022488 Polyphosphate kinase-2-related VagYM4_05270 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_05270 IPR022486 Polyphosphate kinase 2, PA0141 VagYM4_05280 IPR023648 Copper homeostasis CutC domain VagYM4_05280 IPR005627 Copper homeostasis protein CutC VagYM4_05280 IPR036822 Copper homeostasis (CutC) domain superfamily VagYM4_05290 IPR024706 Peroxiredoxin, AhpC-type VagYM4_05290 IPR019479 Peroxiredoxin, C-terminal VagYM4_05290 IPR013766 Thioredoxin domain VagYM4_05290 IPR036249 Thioredoxin-like superfamily VagYM4_05290 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant VagYM4_05300 IPR000847 Transcription regulator HTH, LysR VagYM4_05300 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_05300 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_05300 IPR005119 LysR, substrate-binding VagYM4_05310 IPR019830 Malate synthase, conserved site VagYM4_05310 IPR006252 Malate synthase A VagYM4_05310 IPR001465 Malate synthase VagYM4_05310 IPR011076 Malate synthase-like superfamily VagYM4_05320 IPR006254 Isocitrate lyase VagYM4_05320 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site VagYM4_05320 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_05320 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_05320 IPR039556 ICL/PEPM domain VagYM4_05330 IPR000644 CBS domain VagYM4_05350 IPR042119 QueA, domain 2 VagYM4_05350 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily VagYM4_05350 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA VagYM4_05350 IPR042118 QueA, domain 1 VagYM4_05360 IPR002616 tRNA-guanine(15) transglycosylase-like VagYM4_05360 IPR036511 Queuine tRNA-ribosyltransferase-like VagYM4_05360 IPR004803 tRNA-guanine transglycosylase VagYM4_05370 IPR003849 Preprotein translocase YajC VagYM4_05380 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VagYM4_05380 IPR001036 Acriflavin resistance protein VagYM4_05380 IPR005791 Protein translocase subunit SecD VagYM4_05380 IPR027398 SecD export protein N-terminal TM domain VagYM4_05380 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VagYM4_05380 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VagYM4_05390 IPR005665 Protein-export membrane protein SecF, bacterial VagYM4_05390 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VagYM4_05390 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VagYM4_05390 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VagYM4_05400 IPR020550 Inositol monophosphatase, conserved site VagYM4_05400 IPR000760 Inositol monophosphatase-like VagYM4_05400 IPR033942 Inositol monophosphatase VagYM4_05400 IPR022337 Inositol monophosphatase, SuhB VagYM4_05400 IPR020583 Inositol monophosphatase, metal-binding site VagYM4_05410 IPR029028 Alpha/beta knot methyltransferases VagYM4_05410 IPR004384 RNA methyltransferase TrmJ/LasT VagYM4_05410 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_05410 IPR001537 tRNA/rRNA methyltransferase, SpoU type VagYM4_05420 IPR030489 Transcription regulator Rrf2-type, conserved site VagYM4_05420 IPR000944 Transcription regulator Rrf2-type VagYM4_05420 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_05420 IPR010242 Transcription factor HTH, IscR VagYM4_05420 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_05430 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_05430 IPR016454 Cysteine desulfurase VagYM4_05430 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_05430 IPR010240 Cysteine desulfurase IscS VagYM4_05430 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VagYM4_05430 IPR000192 Aminotransferase class V domain VagYM4_05430 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_05440 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal VagYM4_05440 IPR011339 ISC system FeS cluster assembly, IscU scaffold VagYM4_05450 IPR011302 Iron-binding protein IscA, proteobacteria VagYM4_05450 IPR016092 FeS cluster insertion protein VagYM4_05450 IPR017870 FeS cluster insertion, C-terminal, conserved site VagYM4_05450 IPR000361 FeS cluster biogenesis VagYM4_05450 IPR035903 HesB-like domain superfamily VagYM4_05460 IPR004640 Co-chaperone Hsc20 VagYM4_05460 IPR036869 Chaperone J-domain superfamily VagYM4_05460 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain VagYM4_05460 IPR036386 HscB, C-terminal domain superfamily VagYM4_05460 IPR001623 DnaJ domain VagYM4_05470 IPR018181 Heat shock protein 70, conserved site VagYM4_05470 IPR010236 ISC system FeS cluster assembly, HscA chaperone VagYM4_05470 IPR013126 Heat shock protein 70 family VagYM4_05470 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily VagYM4_05470 IPR042039 HscA chaperone, nucleotide-binding domain VagYM4_05470 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily VagYM4_05480 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria VagYM4_05480 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_05480 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_05480 IPR018298 Adrenodoxin, iron-sulphur binding site VagYM4_05480 IPR001055 Adrenodoxin VagYM4_05480 IPR012675 Beta-grasp domain superfamily VagYM4_05490 IPR007479 ISC system FeS cluster assembly, IscX VagYM4_05490 IPR036762 IscX-like superfamily VagYM4_05500 IPR001346 Interferon regulatory factor DNA-binding domain VagYM4_05500 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B VagYM4_05500 IPR008330 Peptidase M17, peptidase B VagYM4_05500 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal VagYM4_05510 IPR001564 Nucleoside diphosphate kinase VagYM4_05510 IPR023005 Nucleoside diphosphate kinase, active site VagYM4_05510 IPR036850 Nucleoside diphosphate kinase-like domain superfamily VagYM4_05510 IPR034907 Nucleoside diphosphate kinase-like domain VagYM4_05520 IPR013785 Aldolase-type TIM barrel VagYM4_05520 IPR040072 Methyltransferase (Class A) VagYM4_05520 IPR027492 Dual-specificity RNA methyltransferase RlmN VagYM4_05520 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr VagYM4_05520 IPR007197 Radical SAM VagYM4_05530 IPR023690 Cytoskeleton protein RodZ VagYM4_05530 IPR001387 Cro/C1-type helix-turn-helix domain VagYM4_05530 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_05530 IPR025194 Domain of unknown function DUF4115 VagYM4_05540 IPR011005 Dihydropteroate synthase-like VagYM4_05540 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial VagYM4_05540 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type VagYM4_05550 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain VagYM4_05550 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit VagYM4_05550 IPR036621 Anticodon-binding domain superfamily VagYM4_05550 IPR004154 Anticodon-binding VagYM4_05550 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_05550 IPR033656 Histidyl-anticodon-binding VagYM4_05550 IPR015807 Histidine-tRNA ligase VagYM4_05560 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_05560 IPR018704 Tetratricopeptide repeat-like domain VagYM4_05560 IPR026039 Uncharacterised protein family UPF0070 VagYM4_05570 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily VagYM4_05570 IPR015943 WD40/YVTN repeat-like-containing domain superfamily VagYM4_05570 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat VagYM4_05570 IPR017687 Outer membrane protein assembly factor BamB VagYM4_05570 IPR002372 Pyrrolo-quinoline quinone repeat VagYM4_05580 IPR005225 Small GTP-binding protein domain VagYM4_05580 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_05580 IPR015946 K homology domain-like, alpha/beta VagYM4_05580 IPR032859 GTPase Der, C-terminal KH-domain-like VagYM4_05580 IPR006073 GTP binding domain VagYM4_05580 IPR016484 GTP-binding protein EngA VagYM4_05580 IPR031166 EngA-type guanine nucleotide-binding (G) domain VagYM4_05580 IPR003593 AAA+ ATPase domain VagYM4_05610 IPR003753 Exonuclease VII, large subunit VagYM4_05610 IPR020579 Exonuclease VII, large subunit, C-terminal VagYM4_05610 IPR025824 OB-fold nucleic acid binding domain VagYM4_05620 IPR013785 Aldolase-type TIM barrel VagYM4_05620 IPR015875 IMP dehydrogenase / GMP reductase, conserved site VagYM4_05620 IPR001093 IMP dehydrogenase/GMP reductase VagYM4_05620 IPR005990 Inosine-5'-monophosphate dehydrogenase VagYM4_05620 IPR000644 CBS domain VagYM4_05630 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_05630 IPR022310 NAD/GMP synthase VagYM4_05630 IPR025777 GMP synthetase ATP pyrophosphatase domain VagYM4_05630 IPR022955 GMP synthase VagYM4_05630 IPR004739 GMP synthase, glutamine amidotransferase VagYM4_05630 IPR001674 GMP synthase, C-terminal VagYM4_05630 IPR017926 Glutamine amidotransferase VagYM4_05630 IPR029062 Class I glutamine amidotransferase-like VagYM4_05640 IPR010998 Integrase/recombinase, N-terminal VagYM4_05640 IPR025166 Integrase, DNA-binding domain VagYM4_05640 IPR013762 Integrase-like, catalytic domain superfamily VagYM4_05640 IPR038488 Integrase, DNA-binding domain superfamily VagYM4_05640 IPR002104 Integrase, catalytic domain VagYM4_05640 IPR011010 DNA breaking-rejoining enzyme, catalytic core VagYM4_05730 IPR005094 Endonuclease relaxase, MobA/VirD2 VagYM4_05730 IPR040677 Large polyvalent protein-associated domain 7 VagYM4_05790 IPR003356 DNA methylase, adenine-specific VagYM4_05790 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_05790 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_05810 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal VagYM4_05820 IPR013783 Immunoglobulin-like fold VagYM4_05820 IPR017853 Glycoside hydrolase superfamily VagYM4_05820 IPR001223 Glycoside hydrolase family 18, catalytic domain VagYM4_05820 IPR029070 Chitinase insertion domain superfamily VagYM4_05820 IPR011583 Chitinase II VagYM4_05820 IPR009470 Chitinase, C-terminal VagYM4_05820 IPR036573 Carbohydrate-binding module superfamily 5/12 VagYM4_05820 IPR003610 Carbohydrate-binding module family 5/12 VagYM4_05830 IPR000791 Acetate transporter GPR1/FUN34/SatP family VagYM4_05840 IPR001463 Sodium:alanine symporter VagYM4_05850 IPR023080 D-amino acid dehydrogenase DadA VagYM4_05850 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_05850 IPR006076 FAD dependent oxidoreductase VagYM4_05870 IPR013108 Amidohydrolase 3 VagYM4_05870 IPR011059 Metal-dependent hydrolase, composite domain superfamily VagYM4_05870 IPR032466 Metal-dependent hydrolase VagYM4_05880 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_05880 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_05880 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase VagYM4_05880 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme VagYM4_05880 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_05890 IPR005814 Aminotransferase class-III VagYM4_05890 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_05890 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_05890 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_05930 IPR016181 Acyl-CoA N-acyltransferase VagYM4_05930 IPR036526 Carbon-nitrogen hydrolase superfamily VagYM4_05930 IPR001110 Uncharacterised protein family UPF0012, conserved site VagYM4_05930 IPR000182 GNAT domain VagYM4_05930 IPR003010 Carbon-nitrogen hydrolase VagYM4_05940 IPR005119 LysR, substrate-binding VagYM4_05940 IPR000847 Transcription regulator HTH, LysR VagYM4_05940 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_05940 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_05960 IPR000037 SsrA-binding protein VagYM4_05960 IPR023620 Small protein B VagYM4_05960 IPR020081 SsrA-binding protein, conserved site VagYM4_05970 IPR023393 START-like domain superfamily VagYM4_05970 IPR005031 Coenzyme Q-binding protein COQ10, START domain VagYM4_05980 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VagYM4_05980 IPR005346 RnfH protein VagYM4_05980 IPR037021 RnfH superfamily VagYM4_05990 IPR026592 Outer membrane protein assembly factor BamE VagYM4_05990 IPR037873 BamE-like VagYM4_05990 IPR007450 Lipoprotein SmpA/OmlA VagYM4_06000 IPR004604 DNA recombination/repair protein RecN VagYM4_06000 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_06000 IPR003395 RecF/RecN/SMC, N-terminal VagYM4_06020 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal VagYM4_06020 IPR002504 NAD kinase VagYM4_06020 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily VagYM4_06020 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal VagYM4_06030 IPR000740 GrpE nucleotide exchange factor VagYM4_06030 IPR013805 GrpE nucleotide exchange factor, coiled-coil VagYM4_06030 IPR009012 GrpE nucleotide exchange factor, head VagYM4_06040 IPR018107 Sodium:dicarboxylate symporter, conserved site VagYM4_06040 IPR023954 C4-dicarboxylate transport protein VagYM4_06040 IPR001991 Sodium:dicarboxylate symporter VagYM4_06040 IPR036458 Sodium:dicarboxylate symporter superfamily VagYM4_06050 IPR012725 Chaperone DnaK VagYM4_06050 IPR018181 Heat shock protein 70, conserved site VagYM4_06050 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily VagYM4_06050 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily VagYM4_06050 IPR013126 Heat shock protein 70 family VagYM4_06060 IPR018253 DnaJ domain, conserved site VagYM4_06060 IPR008971 HSP40/DnaJ peptide-binding VagYM4_06060 IPR012724 Chaperone DnaJ VagYM4_06060 IPR002939 Chaperone DnaJ, C-terminal VagYM4_06060 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily VagYM4_06060 IPR036869 Chaperone J-domain superfamily VagYM4_06060 IPR001623 DnaJ domain VagYM4_06060 IPR001305 Heat shock protein DnaJ, cysteine-rich domain VagYM4_06070 IPR012902 Prokaryotic N-terminal methylation site VagYM4_06070 IPR001082 Fimbrial protein pilin VagYM4_06120 IPR011540 AbgT, Proteobacteria VagYM4_06120 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT VagYM4_06130 IPR016192 APOBEC/CMP deaminase, zinc-binding VagYM4_06130 IPR002125 Cytidine and deoxycytidylate deaminase domain VagYM4_06130 IPR016193 Cytidine deaminase-like VagYM4_06130 IPR028883 tRNA-specific adenosine deaminase VagYM4_06140 IPR023703 Membrane-bound lytic murein transglycosylase F VagYM4_06140 IPR023346 Lysozyme-like domain superfamily VagYM4_06140 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_06140 IPR000189 Prokaryotic transglycosylase, active site VagYM4_06140 IPR008258 Transglycosylase SLT domain 1 VagYM4_06150 IPR010918 PurM-like, C-terminal domain VagYM4_06150 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain VagYM4_06150 IPR010073 Phosphoribosylformylglycinamidine synthase PurL VagYM4_06150 IPR036921 PurM-like, N-terminal domain superfamily VagYM4_06150 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily VagYM4_06150 IPR017926 Glutamine amidotransferase VagYM4_06150 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal VagYM4_06150 IPR029062 Class I glutamine amidotransferase-like VagYM4_06150 IPR036676 PurM-like, C-terminal domain superfamily VagYM4_06180 IPR010917 TonB-dependent receptor, conserved site VagYM4_06180 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_06180 IPR039426 Vitamin B12 transporter BtuB-like VagYM4_06180 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_06180 IPR011276 TonB-dependent haem/haemoglobin receptor VagYM4_06180 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor VagYM4_06180 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_06180 IPR012910 TonB-dependent receptor, plug domain VagYM4_06210 IPR002933 Peptidase M20 VagYM4_06210 IPR011650 Peptidase M20, dimerisation domain VagYM4_06210 IPR001160 Peptidase M20C, Xaa-His dipeptidase VagYM4_06220 IPR026033 Azaguanine-like transporters VagYM4_06220 IPR006043 Xanthine/uracil/vitamin C permease VagYM4_06230 IPR000836 Phosphoribosyltransferase domain VagYM4_06230 IPR029057 Phosphoribosyltransferase-like VagYM4_06230 IPR023747 Xanthine-guanine phosphoribosyltransferase VagYM4_06250 IPR038208 Sigma factor-binding protein Crl superfamily VagYM4_06250 IPR009986 Sigma factor-binding transcriptional regulator Crl VagYM4_06260 IPR009986 Sigma factor-binding transcriptional regulator Crl VagYM4_06260 IPR038208 Sigma factor-binding protein Crl superfamily VagYM4_06270 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase VagYM4_06270 IPR015947 PUA-like superfamily VagYM4_06270 IPR036974 PUA domain superfamily VagYM4_06270 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_06270 IPR019797 Glutamate 5-kinase, conserved site VagYM4_06270 IPR002478 PUA domain VagYM4_06270 IPR011529 Glutamate 5-kinase VagYM4_06270 IPR001057 Glutamate/acetylglutamate kinase VagYM4_06270 IPR041739 Glutamate-5-kinase domain VagYM4_06270 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_06280 IPR015590 Aldehyde dehydrogenase domain VagYM4_06280 IPR000965 GPR domain VagYM4_06280 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_06280 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site VagYM4_06280 IPR012134 Glutamate-5-semialdehyde dehydrogenase VagYM4_06280 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_06280 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_06290 IPR003796 Ribonucleotide reductase regulator NrdR-like VagYM4_06290 IPR005144 ATP-cone domain VagYM4_06300 IPR024072 Dihydrofolate reductase-like domain superfamily VagYM4_06300 IPR016193 Cytidine deaminase-like VagYM4_06300 IPR002125 Cytidine and deoxycytidylate deaminase domain VagYM4_06300 IPR016192 APOBEC/CMP deaminase, zinc-binding VagYM4_06300 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal VagYM4_06300 IPR004794 Riboflavin biosynthesis protein RibD VagYM4_06300 IPR011549 Riboflavin-specific deaminase, C-terminal VagYM4_06310 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_06310 IPR026017 Lumazine-binding domain VagYM4_06310 IPR001783 Lumazine-binding protein VagYM4_06310 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily VagYM4_06320 IPR036144 RibA-like superfamily VagYM4_06320 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB VagYM4_06320 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VagYM4_06320 IPR032677 GTP cyclohydrolase II VagYM4_06330 IPR002180 Lumazine/riboflavin synthase VagYM4_06330 IPR036467 Lumazine/riboflavin synthase superfamily VagYM4_06330 IPR034964 Lumazine synthase VagYM4_06340 IPR035926 NusB-like superfamily VagYM4_06340 IPR011605 NusB antitermination factor VagYM4_06340 IPR006027 NusB/RsmB/TIM44 VagYM4_06350 IPR036921 PurM-like, N-terminal domain superfamily VagYM4_06350 IPR036676 PurM-like, C-terminal domain superfamily VagYM4_06350 IPR016188 PurM-like, N-terminal domain VagYM4_06350 IPR006283 Thiamine-monophosphate kinase VagYM4_06350 IPR010918 PurM-like, C-terminal domain VagYM4_06360 IPR036681 PgpA-like superfamily VagYM4_06360 IPR026037 Phosphatidylglycerophosphatase A VagYM4_06360 IPR007686 YutG/PgpA domain VagYM4_06370 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II VagYM4_06370 IPR005477 Deoxyxylulose-5-phosphate synthase VagYM4_06370 IPR029061 Thiamin diphosphate-binding fold VagYM4_06370 IPR005475 Transketolase-like, pyrimidine-binding domain VagYM4_06370 IPR020826 Transketolase binding site VagYM4_06370 IPR033248 Transketolase, C-terminal domain VagYM4_06370 IPR005474 Transketolase, N-terminal VagYM4_06380 IPR008949 Isoprenoid synthase domain superfamily VagYM4_06380 IPR000092 Polyprenyl synthetase VagYM4_06380 IPR033749 Polyprenyl synthetase, conserved site VagYM4_06390 IPR003761 Exonuclease VII, small subunit VagYM4_06390 IPR037004 Exonuclease VII, small subunit superfamily VagYM4_06400 IPR000540 Flagellar motor protein MotA, conserved site VagYM4_06400 IPR002898 MotA/TolQ/ExbB proton channel VagYM4_06410 IPR025713 Motility protein B, N-terminal domain VagYM4_06410 IPR006665 OmpA-like domain VagYM4_06410 IPR036737 OmpA-like domain superfamily VagYM4_06420 IPR001763 Rhodanese-like domain VagYM4_06420 IPR036873 Rhodanese-like domain superfamily VagYM4_06420 IPR026340 Thiazole biosynthesis domain VagYM4_06420 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_06420 IPR020536 Thil, AANH domain VagYM4_06420 IPR004114 THUMP domain VagYM4_06420 IPR003720 tRNA sulfurtransferase ThiI VagYM4_06440 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_06440 IPR005119 LysR, substrate-binding VagYM4_06440 IPR000847 Transcription regulator HTH, LysR VagYM4_06440 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_06460 IPR006696 Protein of unknown function DUF423 VagYM4_06470 IPR002877 Ribosomal RNA methyltransferase FtsJ domain VagYM4_06470 IPR011224 Ribosomal RNA large subunit methyltransferase M VagYM4_06470 IPR040739 RlmM ferredoxin-like domain VagYM4_06470 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_06480 IPR020045 DNA polymerase I-like, H3TH domain VagYM4_06480 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal VagYM4_06480 IPR022895 Flap endonuclease Xni VagYM4_06480 IPR038969 Flap endonuclease VagYM4_06480 IPR036279 5'-3' exonuclease, C-terminal domain superfamily VagYM4_06480 IPR029060 PIN-like domain superfamily VagYM4_06480 IPR008918 Helix-hairpin-helix motif, class 2 VagYM4_06480 IPR002421 5'-3' exonuclease, N-terminal VagYM4_06490 IPR031100 LOG family VagYM4_06490 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal VagYM4_06490 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily VagYM4_06490 IPR021826 Domain of unknown function DUF3412 VagYM4_06500 IPR000160 GGDEF domain VagYM4_06500 IPR011006 CheY-like superfamily VagYM4_06500 IPR001789 Signal transduction response regulator, receiver domain VagYM4_06500 IPR029787 Nucleotide cyclase VagYM4_06520 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF VagYM4_06520 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 VagYM4_06520 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal VagYM4_06530 IPR009948 Syd VagYM4_06530 IPR038228 Syd superfamily VagYM4_06540 IPR016908 Uncharacterised conserved protein UCP029037 VagYM4_06550 IPR004872 Lipoprotein NlpA family VagYM4_06560 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_06560 IPR035906 MetI-like superfamily VagYM4_06570 IPR017871 ABC transporter, conserved site VagYM4_06570 IPR003593 AAA+ ATPase domain VagYM4_06570 IPR026253 Methionine import ATP-binding protein MetN VagYM4_06570 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_06570 IPR003439 ABC transporter-like VagYM4_06570 IPR018449 NIL domain VagYM4_06570 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain VagYM4_06570 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal VagYM4_06570 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria VagYM4_06580 IPR006549 HAD-superfamily hydrolase,subfamily IIIA VagYM4_06580 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase VagYM4_06580 IPR006543 Histidinol-phosphate phosphatase VagYM4_06580 IPR036412 HAD-like superfamily VagYM4_06580 IPR023214 HAD superfamily VagYM4_06590 IPR000843 LacI-type HTH domain VagYM4_06590 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_06590 IPR028082 Periplasmic binding protein-like I VagYM4_06590 IPR012771 Trehalose operon repressor VagYM4_06600 IPR036878 Glucose permease domain IIB VagYM4_06600 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component VagYM4_06600 IPR013013 Phosphotransferase system, EIIC component, type 1 VagYM4_06600 IPR011296 Phosphotransferase system, trehalose-specific IIBC component VagYM4_06600 IPR001996 Phosphotransferase system, IIB component, type 1 VagYM4_06600 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site VagYM4_06600 IPR003352 Phosphotransferase system, EIIC VagYM4_06610 IPR017853 Glycoside hydrolase superfamily VagYM4_06610 IPR013780 Glycosyl hydrolase, all-beta VagYM4_06610 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_06610 IPR032091 Maltogenic Amylase, C-terminal VagYM4_06610 IPR012769 Trehalose-6-phosphate hydrolase VagYM4_06650 IPR039429 Serine hydroxymethyltransferase-like domain VagYM4_06650 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site VagYM4_06650 IPR001085 Serine hydroxymethyltransferase VagYM4_06650 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_06650 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_06650 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_06660 IPR007197 Radical SAM VagYM4_06660 IPR006638 Elp3/MiaB/NifB VagYM4_06660 IPR013785 Aldolase-type TIM barrel VagYM4_06660 IPR031691 Lipoyl synthase, N-terminal VagYM4_06660 IPR003698 Lipoyl synthase VagYM4_06670 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain VagYM4_06670 IPR000544 Octanoyltransferase VagYM4_06670 IPR020605 Octanoyltransferase, conserved site VagYM4_06680 IPR007454 Uncharacterised protein family UPF0250 VagYM4_06680 IPR027471 YbeD-like domain superfamily VagYM4_06690 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_06690 IPR015956 Penicillin-binding protein, C-terminal domain superfamily VagYM4_06690 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal VagYM4_06690 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily VagYM4_06690 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal VagYM4_06690 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A VagYM4_06700 IPR012997 Rare lipoprotein A VagYM4_06700 IPR007730 Sporulation-like domain VagYM4_06700 IPR036680 Sporulation-like domain superfamily VagYM4_06700 IPR034718 Endolytic peptidoglycan transglycosylase RlpA VagYM4_06700 IPR036908 RlpA-like domain superfamily VagYM4_06700 IPR009009 RlpA-like protein, double-psi beta-barrel domain VagYM4_06710 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB VagYM4_06710 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site VagYM4_06710 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA VagYM4_06720 IPR005311 Penicillin-binding protein, dimerisation domain VagYM4_06720 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_06720 IPR036138 Penicillin-binding protein, dimerisation domain superfamily VagYM4_06720 IPR001460 Penicillin-binding protein, transpeptidase VagYM4_06720 IPR017790 Penicillin-binding protein 2 VagYM4_06730 IPR029028 Alpha/beta knot methyltransferases VagYM4_06730 IPR003742 RNA methyltransferase RlmH VagYM4_06730 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_06740 IPR004394 Protein Iojap/ribosomal silencing factor RsfS VagYM4_06750 IPR010372 DNA polymerase III delta, N-terminal VagYM4_06750 IPR005790 DNA polymerase III, delta subunit VagYM4_06750 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal VagYM4_06750 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_06750 IPR032780 DNA polymerase III subunit delta, C-terminal VagYM4_06760 IPR007485 LPS-assembly lipoprotein LptE VagYM4_06770 IPR025709 Leucyl-tRNA synthetase, editing domain VagYM4_06770 IPR002300 Aminoacyl-tRNA synthetase, class Ia VagYM4_06770 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding VagYM4_06770 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_06770 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding VagYM4_06770 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_06770 IPR002302 Leucine-tRNA ligase VagYM4_06770 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain VagYM4_06780 IPR009912 Zinc-ribbon containing domain VagYM4_06790 IPR004563 Apolipoprotein N-acyltransferase VagYM4_06790 IPR036526 Carbon-nitrogen hydrolase superfamily VagYM4_06790 IPR003010 Carbon-nitrogen hydrolase VagYM4_06800 IPR000644 CBS domain VagYM4_06800 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_06800 IPR016169 FAD-binding, type PCMH, subdomain 2 VagYM4_06800 IPR005170 Transporter-associated domain VagYM4_06810 IPR020549 Endoribonuclease YbeY, conserved site VagYM4_06810 IPR002036 Endoribonuclease YbeY VagYM4_06810 IPR023091 Metalloprotease catalytic domain superfamily, predicted VagYM4_06820 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_06820 IPR003714 PhoH-like protein VagYM4_06830 IPR007197 Radical SAM VagYM4_06830 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB VagYM4_06830 IPR006638 Elp3/MiaB/NifB VagYM4_06830 IPR005839 Methylthiotransferase VagYM4_06830 IPR002792 TRAM domain VagYM4_06830 IPR023404 Radical SAM, alpha/beta horseshoe VagYM4_06830 IPR020612 Methylthiotransferase, conserved site VagYM4_06830 IPR013848 Methylthiotransferase, N-terminal VagYM4_06830 IPR038135 Methylthiotransferase, N-terminal domain superfamily VagYM4_06840 IPR002938 FAD-binding domain VagYM4_06840 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_06840 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site VagYM4_06840 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 VagYM4_06850 IPR013029 YchF, C-terminal domain VagYM4_06850 IPR012676 TGS-like VagYM4_06850 IPR041706 YchF, N-terminal VagYM4_06850 IPR023192 TGS-like domain superfamily VagYM4_06850 IPR004095 TGS VagYM4_06850 IPR031167 OBG-type guanine nucleotide-binding (G) domain VagYM4_06850 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_06850 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 VagYM4_06850 IPR012675 Beta-grasp domain superfamily VagYM4_06850 IPR006073 GTP binding domain VagYM4_06860 IPR036416 Peptidyl-tRNA hydrolase superfamily VagYM4_06860 IPR001328 Peptidyl-tRNA hydrolase VagYM4_06860 IPR018171 Peptidyl-tRNA hydrolase, conserved site VagYM4_06870 IPR029057 Phosphoribosyltransferase-like VagYM4_06870 IPR005946 Ribose-phosphate pyrophosphokinase VagYM4_06870 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site VagYM4_06870 IPR000836 Phosphoribosyltransferase domain VagYM4_06870 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type VagYM4_06870 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain VagYM4_06880 IPR006204 GHMP kinase N-terminal domain VagYM4_06880 IPR036554 GHMP kinase, C-terminal domain superfamily VagYM4_06880 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase VagYM4_06880 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_06880 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_06880 IPR013750 GHMP kinase, C-terminal domain VagYM4_06890 IPR029046 Lipoprotein localisation LolA/LolB/LppX VagYM4_06890 IPR004565 Outer membrane lipoprotein LolB VagYM4_06900 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily VagYM4_06900 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain VagYM4_06900 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase VagYM4_06900 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase VagYM4_06900 IPR036291 NAD(P)-binding domain superfamily VagYM4_06900 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily VagYM4_06900 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal VagYM4_06900 IPR018214 Glutamyl-tRNA reductase, conserved site VagYM4_06910 IPR005139 Peptide chain release factor VagYM4_06910 IPR000352 Peptide chain release factor class I VagYM4_06910 IPR004373 Peptide chain release factor 1 VagYM4_06920 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_06920 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific VagYM4_06920 IPR040758 Release factor glutamine methyltransferase, N-terminal domain VagYM4_06920 IPR004556 Methyltransferase HemK-like VagYM4_06920 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_06920 IPR025714 Methyltransferase domain VagYM4_06930 IPR007360 Invasion gene expression up-regulator, SirB VagYM4_06940 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_06940 IPR032698 Protein SirB1, N-terminal VagYM4_06950 IPR013785 Aldolase-type TIM barrel VagYM4_06950 IPR006218 DAHP synthetase I/KDSA VagYM4_06950 IPR006269 3-deoxy-8-phosphooctulonate synthase VagYM4_06960 IPR006179 5'-Nucleotidase/apyrase VagYM4_06960 IPR008334 5'-Nucleotidase, C-terminal VagYM4_06960 IPR036907 5'-Nucleotidase, C-terminal domain superfamily VagYM4_06960 IPR006146 5'-Nucleotidase, conserved site VagYM4_06960 IPR029052 Metallo-dependent phosphatase-like VagYM4_06960 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type VagYM4_06970 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain VagYM4_06970 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC VagYM4_06970 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily VagYM4_06980 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F VagYM4_06980 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site VagYM4_06980 IPR002942 RNA-binding S4 domain VagYM4_06980 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_06980 IPR036986 RNA-binding S4 domain superfamily VagYM4_06980 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain VagYM4_06980 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_06990 IPR002625 Smr domain VagYM4_06990 IPR036063 Smr domain superfamily VagYM4_07030 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VagYM4_07030 IPR013783 Immunoglobulin-like fold VagYM4_07030 IPR015883 Glycoside hydrolase family 20, catalytic domain VagYM4_07030 IPR029018 Beta-hexosaminidase-like, domain 2 VagYM4_07030 IPR014756 Immunoglobulin E-set VagYM4_07030 IPR017853 Glycoside hydrolase superfamily VagYM4_07030 IPR004867 Chitobiase C-terminal domain VagYM4_07030 IPR025705 Beta-hexosaminidase VagYM4_07030 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily VagYM4_07030 IPR012291 CBM2, carbohydrate-binding domain superfamily VagYM4_07030 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain VagYM4_07060 IPR023214 HAD superfamily VagYM4_07060 IPR023298 P-type ATPase, transmembrane domain superfamily VagYM4_07060 IPR001757 P-type ATPase VagYM4_07060 IPR018303 P-type ATPase, phosphorylation site VagYM4_07060 IPR008250 P-type ATPase, A domain superfamily VagYM4_07060 IPR027256 P-type ATPase, subfamily IB VagYM4_07060 IPR036163 Heavy metal-associated domain superfamily VagYM4_07060 IPR006121 Heavy metal-associated domain, HMA VagYM4_07060 IPR017969 Heavy-metal-associated, conserved site VagYM4_07060 IPR036412 HAD-like superfamily VagYM4_07060 IPR023299 P-type ATPase, cytoplasmic domain N VagYM4_07070 IPR002299 Porin, Neisseria sp. type VagYM4_07070 IPR001702 Porin, Gram-negative type VagYM4_07070 IPR023614 Porin domain superfamily VagYM4_07070 IPR033900 Porin domain, Gram-negative type VagYM4_07080 IPR018635 Uncharacterised protein family UPF0319 VagYM4_07090 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial VagYM4_07090 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding VagYM4_07090 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 VagYM4_07090 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_07090 IPR000924 Glutamyl/glutaminyl-tRNA synthetase VagYM4_07090 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_07090 IPR033910 Glutamyl-tRNA synthetase VagYM4_07090 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain VagYM4_07100 IPR000498 Outer membrane protein OmpA-like, transmembrane domain VagYM4_07100 IPR036737 OmpA-like domain superfamily VagYM4_07100 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VagYM4_07100 IPR006664 Outer membrane protein, bacterial VagYM4_07100 IPR002368 Outer membrane protein, OmpA VagYM4_07100 IPR006665 OmpA-like domain VagYM4_07100 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_07180 IPR011006 CheY-like superfamily VagYM4_07180 IPR001789 Signal transduction response regulator, receiver domain VagYM4_07180 IPR024181 Chemotaxis response regulator CheV VagYM4_07180 IPR002545 CheW-like domain VagYM4_07180 IPR036061 CheW-like domain superfamily VagYM4_07190 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal VagYM4_07190 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_07190 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal VagYM4_07190 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily VagYM4_07190 IPR000780 MCP methyltransferase, CheR-type VagYM4_07200 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_07200 IPR006300 Flagellar basal-body rod protein FlgB VagYM4_07200 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_07210 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_07210 IPR006299 Flagellar basal-body rod protein FlgC VagYM4_07210 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_07210 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_07220 IPR025963 FlgD Tudor-like domain VagYM4_07220 IPR025965 FlgD Ig-like domain VagYM4_07220 IPR005648 Flagellar hook capping protein VagYM4_07230 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_07230 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VagYM4_07230 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_07230 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_07230 IPR011491 Flagellar hook protein FlgE VagYM4_07230 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VagYM4_07230 IPR037058 Flagellar hook protein FlgE superfamily VagYM4_07240 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VagYM4_07240 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_07240 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VagYM4_07240 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_07240 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_07250 IPR012834 Flagellar basal-body rod FlgG VagYM4_07250 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_07250 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_07250 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VagYM4_07250 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_07250 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VagYM4_07260 IPR000527 Flagellar L-ring protein VagYM4_07270 IPR001782 Flagellar P-ring protein VagYM4_07280 IPR013377 Peptidoglycan hydrolase FlgJ VagYM4_07280 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain VagYM4_07280 IPR019301 Flagellar protein FlgJ, N-terminal VagYM4_07290 IPR010810 Flagellin hook, IN motif VagYM4_07290 IPR002371 Flagellar hook-associated protein 1 VagYM4_07290 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_07300 IPR001029 Flagellin, D0/D1 domain VagYM4_07300 IPR013384 Flagellar hook-associated protein 3 VagYM4_07320 IPR001029 Flagellin, D0/D1 domain VagYM4_07320 IPR010810 Flagellin hook, IN motif VagYM4_07320 IPR001492 Flagellin VagYM4_07320 IPR042187 Flagellin, C-terminal domain, subdomain 2 VagYM4_07330 IPR010810 Flagellin hook, IN motif VagYM4_07330 IPR001029 Flagellin, D0/D1 domain VagYM4_07330 IPR042187 Flagellin, C-terminal domain, subdomain 2 VagYM4_07330 IPR001492 Flagellin VagYM4_07340 IPR001492 Flagellin VagYM4_07340 IPR001029 Flagellin, D0/D1 domain VagYM4_07340 IPR010810 Flagellin hook, IN motif VagYM4_07350 IPR011055 Duplicated hybrid motif VagYM4_07350 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 VagYM4_07360 IPR006318 Phosphotransferase system, enzyme I-like VagYM4_07360 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_07360 IPR008731 Phosphotransferase system, enzyme I N-terminal VagYM4_07360 IPR024692 Phosphotransferase system, enzyme I VagYM4_07360 IPR023151 PEP-utilising enzyme, conserved site VagYM4_07360 IPR036637 Phosphohistidine domain superfamily VagYM4_07360 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_07360 IPR036618 PtsI, HPr-binding domain superfamily VagYM4_07360 IPR008279 PEP-utilising enzyme, mobile domain VagYM4_07360 IPR018274 PEP-utilising enzyme, active site VagYM4_07360 IPR000121 PEP-utilising enzyme, C-terminal VagYM4_07380 IPR000032 Phosphocarrier protein HPr-like VagYM4_07380 IPR002114 Phosphotransferase system, HPr serine phosphorylation site VagYM4_07380 IPR035895 HPr-like superfamily VagYM4_07380 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VagYM4_07390 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site VagYM4_07390 IPR001926 Pyridoxal-phosphate dependent enzyme VagYM4_07390 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VagYM4_07390 IPR005856 Cysteine synthase VagYM4_07390 IPR005859 Cysteine synthase CysK VagYM4_07400 IPR022985 Sulfate transporter CysZ VagYM4_07410 IPR007449 ZipA, C-terminal FtsZ-binding domain VagYM4_07410 IPR011919 Cell division protein ZipA VagYM4_07410 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily VagYM4_07420 IPR041663 DisA/LigA, helix-hairpin-helix motif VagYM4_07420 IPR001357 BRCT domain VagYM4_07420 IPR036420 BRCT domain superfamily VagYM4_07420 IPR018239 NAD-dependent DNA ligase, active site VagYM4_07420 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 VagYM4_07420 IPR001679 NAD-dependent DNA ligase VagYM4_07420 IPR013839 NAD-dependent DNA ligase, adenylation VagYM4_07420 IPR013840 NAD-dependent DNA ligase, N-terminal VagYM4_07420 IPR012340 Nucleic acid-binding, OB-fold VagYM4_07420 IPR004150 NAD-dependent DNA ligase, OB-fold VagYM4_07420 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type VagYM4_07420 IPR033136 NAD-dependent DNA ligase, conserved site VagYM4_07420 IPR010994 RuvA domain 2-like VagYM4_07430 IPR023614 Porin domain superfamily VagYM4_07430 IPR005318 Outer membrane porin, bacterial VagYM4_07470 IPR001972 Stomatin family VagYM4_07470 IPR032435 Band 7, C-terminal extension VagYM4_07470 IPR018080 Band 7/stomatin-like, conserved site VagYM4_07470 IPR001107 Band 7 domain VagYM4_07470 IPR036013 Band 7/SPFH domain superfamily VagYM4_07480 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_07480 IPR036249 Thioredoxin-like superfamily VagYM4_07480 IPR013766 Thioredoxin domain VagYM4_07490 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_07490 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_07490 IPR036291 NAD(P)-binding domain superfamily VagYM4_07500 IPR010099 Epimerase family protein SDR39U1 VagYM4_07500 IPR013549 Domain of unknown function DUF1731 VagYM4_07500 IPR001509 NAD-dependent epimerase/dehydratase VagYM4_07500 IPR036291 NAD(P)-binding domain superfamily VagYM4_07510 IPR011435 Na(+), Li(+), K(+)/H(+) antiporter subunit A/B VagYM4_07520 IPR011435 Na(+), Li(+), K(+)/H(+) antiporter subunit A/B VagYM4_07560 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type VagYM4_07560 IPR029052 Metallo-dependent phosphatase-like VagYM4_07560 IPR000979 Phosphodiesterase MJ0936/Vps29 VagYM4_07560 IPR041802 YfcE-like, metallophosphatase domain VagYM4_07560 IPR020935 Phosphodiesterase YfcE, conserved site VagYM4_07590 IPR035288 Trans-membrane regulatory protein ToxS VagYM4_07600 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_07600 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_07600 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_07600 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_07610 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_07610 IPR020575 Heat shock protein Hsp90, N-terminal VagYM4_07610 IPR019805 Heat shock protein Hsp90, conserved site VagYM4_07610 IPR001404 Heat shock protein Hsp90 family VagYM4_07610 IPR037196 HSP90, C-terminal domain VagYM4_07610 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_07610 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_07620 IPR033690 Adenylate kinase, conserved site VagYM4_07620 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_07620 IPR007862 Adenylate kinase, active site lid domain VagYM4_07620 IPR000850 Adenylate kinase/UMP-CMP kinase VagYM4_07620 IPR006259 Adenylate kinase subfamily VagYM4_07630 IPR019772 Ferrochelatase, active site VagYM4_07630 IPR033644 Ferrochelatase, C-terminal VagYM4_07630 IPR033659 Ferrochelatase, N-terminal VagYM4_07630 IPR001015 Ferrochelatase VagYM4_07650 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site VagYM4_07650 IPR000109 Proton-dependent oligopeptide transporter family VagYM4_07650 IPR036259 MFS transporter superfamily VagYM4_07650 IPR020846 Major facilitator superfamily domain VagYM4_07650 IPR005279 Dipeptide/tripeptide permease VagYM4_07660 IPR036735 NusG, N-terminal domain superfamily VagYM4_07660 IPR006645 NusG, N-terminal VagYM4_07660 IPR010215 Transcription antitermination protein RfaH VagYM4_07670 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_07670 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_07670 IPR017932 Glutamine amidotransferase type 2 domain VagYM4_07670 IPR033738 Asparagine synthase, N-terminal domain VagYM4_07670 IPR001962 Asparagine synthase VagYM4_07670 IPR006426 Asparagine synthase, glutamine-hydrolyzing VagYM4_07680 IPR004771 K+/H+ exchanger VagYM4_07680 IPR036291 NAD(P)-binding domain superfamily VagYM4_07680 IPR003148 Regulator of K+ conductance, N-terminal VagYM4_07680 IPR006153 Cation/H+ exchanger VagYM4_07680 IPR038770 Sodium/solute symporter superfamily VagYM4_07690 IPR000835 MarR-type HTH domain VagYM4_07690 IPR000600 ROK family VagYM4_07690 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_07690 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_07700 IPR032466 Metal-dependent hydrolase VagYM4_07700 IPR006680 Amidohydrolase-related VagYM4_07700 IPR003764 N-acetylglucosamine-6-phosphate deacetylase VagYM4_07700 IPR011059 Metal-dependent hydrolase, composite domain superfamily VagYM4_07710 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 VagYM4_07710 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site VagYM4_07710 IPR036878 Glucose permease domain IIB VagYM4_07710 IPR011055 Duplicated hybrid motif VagYM4_07710 IPR001996 Phosphotransferase system, IIB component, type 1 VagYM4_07710 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component VagYM4_07710 IPR013013 Phosphotransferase system, EIIC component, type 1 VagYM4_07710 IPR003352 Phosphotransferase system, EIIC VagYM4_07720 IPR000924 Glutamyl/glutaminyl-tRNA synthetase VagYM4_07720 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily VagYM4_07720 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_07720 IPR022861 Glutamine-tRNA ligase, bacterial VagYM4_07720 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_07720 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal VagYM4_07720 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain VagYM4_07720 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain VagYM4_07720 IPR004514 Glutamine-tRNA synthetase VagYM4_07720 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily VagYM4_07730 IPR002481 Ferric-uptake regulator VagYM4_07730 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_07730 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_07750 IPR008254 Flavodoxin/nitric oxide synthase VagYM4_07750 IPR010086 Flavodoxin, long chain VagYM4_07750 IPR029039 Flavoprotein-like superfamily VagYM4_07750 IPR001226 Flavodoxin, conserved site VagYM4_07770 IPR029058 Alpha/Beta hydrolase fold VagYM4_07770 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_07780 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily VagYM4_07780 IPR013321 Arc-type ribbon-helix-helix VagYM4_07780 IPR010985 Ribbon-helix-helix VagYM4_07780 IPR005621 Negative modulator of initiation of replication SeqA VagYM4_07780 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain VagYM4_07780 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal VagYM4_07790 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily VagYM4_07790 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III VagYM4_07790 IPR005843 Alpha-D-phosphohexomutase, C-terminal VagYM4_07790 IPR016066 Alpha-D-phosphohexomutase, conserved site VagYM4_07790 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II VagYM4_07790 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III VagYM4_07790 IPR005852 Phosphoglucomutase, alpha-D-glucose specific VagYM4_07790 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I VagYM4_07810 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily VagYM4_07810 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 VagYM4_07820 IPR016143 Citrate synthase-like, small alpha subdomain VagYM4_07820 IPR010953 Citrate synthase, type I VagYM4_07820 IPR036969 Citrate synthase superfamily VagYM4_07820 IPR016142 Citrate synthase-like, large alpha subdomain VagYM4_07820 IPR002020 Citrate synthase VagYM4_07820 IPR024176 Citrate synthase, bacterial-type VagYM4_07820 IPR019810 Citrate synthase active site VagYM4_07830 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit VagYM4_07830 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit VagYM4_07830 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit VagYM4_07830 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site VagYM4_07840 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit VagYM4_07840 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit VagYM4_07840 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor VagYM4_07850 IPR011281 Succinate dehydrogenase, flavoprotein subunit VagYM4_07850 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit VagYM4_07850 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal VagYM4_07850 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily VagYM4_07850 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site VagYM4_07850 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_07850 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain VagYM4_07850 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily VagYM4_07860 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_07860 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_07860 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_07860 IPR012675 Beta-grasp domain superfamily VagYM4_07860 IPR009051 Alpha-helical ferredoxin VagYM4_07860 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein VagYM4_07860 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal VagYM4_07860 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_07870 IPR005475 Transketolase-like, pyrimidine-binding domain VagYM4_07870 IPR029061 Thiamin diphosphate-binding fold VagYM4_07870 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily VagYM4_07870 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain VagYM4_07870 IPR001017 Dehydrogenase, E1 component VagYM4_07870 IPR011603 2-oxoglutarate dehydrogenase E1 component VagYM4_07870 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal VagYM4_07880 IPR000089 Biotin/lipoyl attachment VagYM4_07880 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily VagYM4_07880 IPR036625 E3-binding domain superfamily VagYM4_07880 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain VagYM4_07880 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site VagYM4_07880 IPR004167 Peripheral subunit-binding domain VagYM4_07880 IPR011053 Single hybrid motif VagYM4_07880 IPR006255 Dihydrolipoamide succinyltransferase VagYM4_07890 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site VagYM4_07890 IPR005811 ATP-citrate lyase/succinyl-CoA ligase VagYM4_07890 IPR005809 Succinate--CoA synthetase, beta subunit VagYM4_07890 IPR016102 Succinyl-CoA synthetase-like VagYM4_07890 IPR011761 ATP-grasp fold VagYM4_07890 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_07890 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type VagYM4_07900 IPR005811 ATP-citrate lyase/succinyl-CoA ligase VagYM4_07900 IPR003781 CoA-binding VagYM4_07900 IPR005810 Succinyl-CoA ligase, alpha subunit VagYM4_07900 IPR036291 NAD(P)-binding domain superfamily VagYM4_07900 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site VagYM4_07900 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site VagYM4_07900 IPR016102 Succinyl-CoA synthetase-like VagYM4_07910 IPR001626 ABC transporter, TroCD-like VagYM4_07910 IPR037294 ABC transporter, BtuC-like VagYM4_07920 IPR017882 Zinc import ATP-binding protein ZnuC VagYM4_07920 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_07920 IPR003439 ABC transporter-like VagYM4_07920 IPR003593 AAA+ ATPase domain VagYM4_07930 IPR006127 Periplasmic solute binding protein, ZnuA-like VagYM4_07930 IPR006128 Adhesion lipoprotein VagYM4_07930 IPR035520 High-affinity zinc uptake system protein ZnuA VagYM4_07940 IPR020449 Transcription regulator HTH, AraC- type VagYM4_07940 IPR014710 RmlC-like jelly roll fold VagYM4_07940 IPR023609 Transcription regulator HTH, RhaS VagYM4_07940 IPR009057 Homeobox-like domain superfamily VagYM4_07940 IPR003313 AraC-type arabinose-binding/dimerisation domain VagYM4_07940 IPR011051 RmlC-like cupin domain superfamily VagYM4_07940 IPR018060 DNA binding HTH domain, AraC-type VagYM4_07950 IPR008988 Transcriptional repressor, C-terminal VagYM4_07950 IPR038157 Ferrous iron transporter, core domain VagYM4_07950 IPR007167 Ferrous iron transporter FeoA domain VagYM4_07960 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain VagYM4_07960 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_07960 IPR005225 Small GTP-binding protein domain VagYM4_07960 IPR003373 Ferrous iron transport protein B VagYM4_07960 IPR011640 Ferrous iron transport protein B, C-terminal VagYM4_07960 IPR041069 FeoB, cytosolic helical domain VagYM4_07960 IPR030389 FeoB-type guanine nucleotide-binding (G) domain VagYM4_07990 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_07990 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding VagYM4_07990 IPR035684 Arginyl-tRNA synthetase, catalytic core domain VagYM4_07990 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily VagYM4_07990 IPR008909 DALR anticodon binding VagYM4_07990 IPR005148 Arginyl tRNA synthetase N-terminal domain VagYM4_07990 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_07990 IPR001278 Arginine-tRNA ligase VagYM4_08000 IPR010393 Protein of unknown function DUF991 VagYM4_08000 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_08020 IPR033116 Serine proteases, trypsin family, serine active site VagYM4_08020 IPR018114 Serine proteases, trypsin family, histidine active site VagYM4_08020 IPR001254 Serine proteases, trypsin domain VagYM4_08020 IPR009003 Peptidase S1, PA clan VagYM4_08020 IPR001314 Peptidase S1A, chymotrypsin family VagYM4_08030 IPR004810 Formyltetrahydrofolate deformylase VagYM4_08030 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain VagYM4_08030 IPR002912 ACT domain VagYM4_08030 IPR002376 Formyl transferase, N-terminal VagYM4_08030 IPR036477 Formyl transferase, N-terminal domain superfamily VagYM4_08040 IPR006555 ATP-dependent helicase, C-terminal VagYM4_08040 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_08040 IPR006935 Helicase/UvrB, N-terminal VagYM4_08040 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type VagYM4_08040 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_08050 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB VagYM4_08050 IPR000905 Gcp-like domain VagYM4_08070 IPR004658 Outer membrane lipoprotein Slp VagYM4_08080 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_08080 IPR029058 Alpha/Beta hydrolase fold VagYM4_08080 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase VagYM4_08090 IPR025110 AMP-binding enzyme, C-terminal domain VagYM4_08090 IPR000873 AMP-dependent synthetase/ligase VagYM4_08090 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_08090 IPR020845 AMP-binding, conserved site VagYM4_08100 IPR036397 Ribonuclease H superfamily VagYM4_08100 IPR012337 Ribonuclease H-like superfamily VagYM4_08100 IPR006292 Ribonuclease D VagYM4_08100 IPR002121 HRDC domain VagYM4_08100 IPR010997 HRDC-like superfamily VagYM4_08100 IPR002562 3'-5' exonuclease domain VagYM4_08110 IPR005527 Cell division topological specificity factor MinE VagYM4_08110 IPR036707 Cell division topological specificity factor MinE superfamily VagYM4_08120 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_08120 IPR025501 ATP binding protein MinD VagYM4_08120 IPR010223 ATP binding protein MinD, bacterial-type VagYM4_08120 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain VagYM4_08130 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily VagYM4_08130 IPR005526 Septum formation inhibitor MinC, C-terminal VagYM4_08130 IPR013033 Septum formation inhibitor MinC VagYM4_08130 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal VagYM4_08130 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily VagYM4_08130 IPR007874 Septum formation inhibitor MinC, N-terminal VagYM4_08140 IPR038068 YcgL-like superfamily VagYM4_08140 IPR027354 YcgL domain VagYM4_08150 IPR023346 Lysozyme-like domain superfamily VagYM4_08150 IPR011757 Lytic transglycosylase MltB VagYM4_08150 IPR031304 Transglycosylase SLT domain 2 VagYM4_08160 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_08160 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_08160 IPR000847 Transcription regulator HTH, LysR VagYM4_08160 IPR005119 LysR, substrate-binding VagYM4_08170 IPR002668 Concentrative nucleoside transporter N-terminal domain VagYM4_08170 IPR011657 Concentrative nucleoside transporter C-terminal domain VagYM4_08170 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial VagYM4_08170 IPR008276 Concentrative nucleoside transporter VagYM4_08170 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain VagYM4_08180 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VagYM4_08180 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase VagYM4_08180 IPR036291 NAD(P)-binding domain superfamily VagYM4_08180 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VagYM4_08180 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site VagYM4_08190 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_08190 IPR004033 UbiE/COQ5 methyltransferase VagYM4_08190 IPR023576 UbiE/COQ5 methyltransferase, conserved site VagYM4_08200 IPR000794 Beta-ketoacyl synthase VagYM4_08200 IPR014030 Beta-ketoacyl synthase, N-terminal VagYM4_08200 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VagYM4_08200 IPR018201 Beta-ketoacyl synthase, active site VagYM4_08200 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 VagYM4_08200 IPR016039 Thiolase-like VagYM4_08200 IPR014031 Beta-ketoacyl synthase, C-terminal VagYM4_08210 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_08210 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative VagYM4_08210 IPR036291 NAD(P)-binding domain superfamily VagYM4_08220 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ VagYM4_08220 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ VagYM4_08220 IPR029069 HotDog domain superfamily VagYM4_08230 IPR018201 Beta-ketoacyl synthase, active site VagYM4_08230 IPR014031 Beta-ketoacyl synthase, C-terminal VagYM4_08230 IPR014030 Beta-ketoacyl synthase, N-terminal VagYM4_08230 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VagYM4_08230 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 VagYM4_08230 IPR000794 Beta-ketoacyl synthase VagYM4_08230 IPR016039 Thiolase-like VagYM4_08280 IPR001106 Aromatic amino acid lyase VagYM4_08280 IPR024083 Fumarase/histidase, N-terminal VagYM4_08280 IPR005921 Histidine ammonia-lyase VagYM4_08280 IPR008948 L-Aspartase-like VagYM4_08280 IPR022313 Phenylalanine/histidine ammonia-lyases, active site VagYM4_08290 IPR039528 DPM1-like VagYM4_08290 IPR001173 Glycosyltransferase 2-like VagYM4_08290 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_08300 IPR029069 HotDog domain superfamily VagYM4_08300 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ VagYM4_08300 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ VagYM4_08330 IPR036736 ACP-like superfamily VagYM4_08330 IPR003231 Acyl carrier protein (ACP) VagYM4_08330 IPR009081 Phosphopantetheine binding ACP domain VagYM4_08340 IPR006162 Phosphopantetheine attachment site VagYM4_08340 IPR009081 Phosphopantetheine binding ACP domain VagYM4_08340 IPR003231 Acyl carrier protein (ACP) VagYM4_08340 IPR036736 ACP-like superfamily VagYM4_08390 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_08390 IPR006905 Flavin-dependent halogenase VagYM4_08410 IPR005170 Transporter-associated domain VagYM4_08410 IPR016169 FAD-binding, type PCMH, subdomain 2 VagYM4_08410 IPR000644 CBS domain VagYM4_08410 IPR002550 CNNM, transmembrane domain VagYM4_08410 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_08420 IPR011545 DEAD/DEAH box helicase domain VagYM4_08420 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_08420 IPR001650 Helicase, C-terminal VagYM4_08420 IPR028622 ATP-dependent RNA helicase RhlE VagYM4_08420 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_08420 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_08420 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_08430 IPR036291 NAD(P)-binding domain superfamily VagYM4_08430 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_08430 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_08430 IPR003148 Regulator of K+ conductance, N-terminal VagYM4_08440 IPR004772 TrkH potassium transport family VagYM4_08440 IPR003445 Cation transporter VagYM4_08470 IPR003846 Protein adenylyltransferase SelO VagYM4_08480 IPR004682 TRAP transporter solute receptor, DctP family VagYM4_08480 IPR038404 TRAP transporter solute receptor DctP superfamily VagYM4_08480 IPR018389 TRAP transporter solute receptor DctP/TeaA VagYM4_08490 IPR007387 TRAP transporter, small membrane protein DctQ VagYM4_08500 IPR004681 TRAP transporter large membrane protein DctM VagYM4_08500 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VagYM4_08510 IPR003593 AAA+ ATPase domain VagYM4_08510 IPR011006 CheY-like superfamily VagYM4_08510 IPR009057 Homeobox-like domain superfamily VagYM4_08510 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_08510 IPR002197 DNA binding HTH domain, Fis-type VagYM4_08510 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_08510 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_08510 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_08510 IPR001789 Signal transduction response regulator, receiver domain VagYM4_08510 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_08520 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) VagYM4_08520 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_08520 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_08520 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_08520 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_08520 IPR005467 Histidine kinase domain VagYM4_08520 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_08520 IPR033479 Double Cache domain 1 VagYM4_08520 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_08530 IPR036611 Trigger factor ribosome-binding domain superfamily VagYM4_08530 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VagYM4_08530 IPR005215 Trigger factor VagYM4_08530 IPR027304 Trigger factor/SurA domain superfamily VagYM4_08530 IPR008880 Trigger factor, C-terminal VagYM4_08530 IPR037041 Trigger factor, C-terminal domain superfamily VagYM4_08530 IPR008881 Trigger factor, ribosome-binding, bacterial VagYM4_08540 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA VagYM4_08540 IPR018215 ClpP, Ser active site VagYM4_08540 IPR033135 ClpP, histidine active site VagYM4_08540 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_08540 IPR001907 ATP-dependent Clp protease proteolytic subunit VagYM4_08550 IPR003593 AAA+ ATPase domain VagYM4_08550 IPR038366 Zinc finger, ClpX C4-type superfamily VagYM4_08550 IPR010603 Zinc finger, ClpX C4-type VagYM4_08550 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_08550 IPR004487 Clp protease, ATP-binding subunit ClpX VagYM4_08550 IPR019489 Clp ATPase, C-terminal VagYM4_08550 IPR003959 ATPase, AAA-type, core VagYM4_08560 IPR003111 Lon, substrate-binding domain VagYM4_08560 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_08560 IPR027065 Lon protease VagYM4_08560 IPR015947 PUA-like superfamily VagYM4_08560 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_08560 IPR008269 Peptidase S16, Lon proteolytic domain VagYM4_08560 IPR004815 Lon protease, bacterial/eukaryotic-type VagYM4_08560 IPR003593 AAA+ ATPase domain VagYM4_08560 IPR003959 ATPase, AAA-type, core VagYM4_08560 IPR027543 Lon protease, bacterial VagYM4_08560 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_08570 IPR000119 Histone-like DNA-binding protein VagYM4_08570 IPR020816 Histone-like DNA-binding protein, conserved site VagYM4_08570 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily VagYM4_08580 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type VagYM4_08580 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site VagYM4_08580 IPR027304 Trigger factor/SurA domain superfamily VagYM4_08590 IPR004509 Competence protein ComEA, helix-hairpin-helix domain VagYM4_08590 IPR010994 RuvA domain 2-like VagYM4_08620 IPR003607 HD/PDEase domain VagYM4_08620 IPR006261 dNTP triphosphohydrolase VagYM4_08620 IPR023023 dNTP triphosphohydrolase, type 2 VagYM4_08620 IPR026875 Phosphohydrolase-associated domain VagYM4_08620 IPR006674 HD domain VagYM4_08630 IPR003607 HD/PDEase domain VagYM4_08630 IPR022971 5'-deoxynucleotidase YfbR VagYM4_08630 IPR039356 Metal-dependent nucleoside 5'-monophosphatase VagYM4_08640 IPR004839 Aminotransferase, class I/classII VagYM4_08640 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_08640 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_08640 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_08650 IPR005801 ADC synthase VagYM4_08650 IPR015890 Chorismate-utilising enzyme, C-terminal VagYM4_08650 IPR004561 Isochorismate synthase VagYM4_08650 IPR034681 Isochorismate synthase MenF VagYM4_08660 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding VagYM4_08660 IPR029061 Thiamin diphosphate-binding fold VagYM4_08660 IPR032264 Menaquinone biosynthesis protein MenD, middle domain VagYM4_08660 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase VagYM4_08660 IPR029035 DHS-like NAD/FAD-binding domain superfamily VagYM4_08660 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain VagYM4_08670 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_08670 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase VagYM4_08670 IPR029058 Alpha/Beta hydrolase fold VagYM4_08680 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site VagYM4_08680 IPR014748 Enoyl-CoA hydratase, C-terminal VagYM4_08680 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB VagYM4_08680 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_08680 IPR001753 Enoyl-CoA hydratase/isomerase VagYM4_08690 IPR029017 Enolase-like, N-terminal VagYM4_08690 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal VagYM4_08690 IPR036849 Enolase-like, C-terminal domain superfamily VagYM4_08690 IPR010196 o-Succinylbenzoate synthase, MenC type1 VagYM4_08690 IPR029065 Enolase C-terminal domain-like VagYM4_08700 IPR000873 AMP-dependent synthetase/ligase VagYM4_08700 IPR020845 AMP-binding, conserved site VagYM4_08700 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_08700 IPR025110 AMP-binding enzyme, C-terminal domain VagYM4_08700 IPR010192 2-succinylbenzoate--CoA ligase VagYM4_08720 IPR018383 Uncharacterised protein family UPF0324, prokaryote VagYM4_08730 IPR023727 Lysophospholipid transporter LplT VagYM4_08730 IPR011701 Major facilitator superfamily VagYM4_08730 IPR036259 MFS transporter superfamily VagYM4_08760 IPR006143 RND efflux pump, membrane fusion protein VagYM4_08760 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_08770 IPR001036 Acriflavin resistance protein VagYM4_08770 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_08810 IPR005856 Cysteine synthase VagYM4_08810 IPR005858 Cysteine synthase CysM VagYM4_08810 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site VagYM4_08810 IPR001926 Pyridoxal-phosphate dependent enzyme VagYM4_08810 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VagYM4_08820 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VagYM4_08820 IPR011991 ArsR-like helix-turn-helix domain VagYM4_08820 IPR011008 Dimeric alpha-beta barrel VagYM4_08820 IPR000485 AsnC-type HTH domain VagYM4_08820 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VagYM4_08820 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_08820 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_08820 IPR019888 Transcription regulator AsnC-type VagYM4_08840 IPR003703 Acyl-CoA thioesterase VagYM4_08840 IPR029069 HotDog domain superfamily VagYM4_08850 IPR039366 YscW/ExsB VagYM4_08860 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_08860 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain VagYM4_08860 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding VagYM4_08880 IPR011006 CheY-like superfamily VagYM4_08880 IPR000160 GGDEF domain VagYM4_08880 IPR029787 Nucleotide cyclase VagYM4_08880 IPR001789 Signal transduction response regulator, receiver domain VagYM4_08890 IPR002514 Transposase IS3/IS911family VagYM4_08890 IPR009057 Homeobox-like domain superfamily VagYM4_08900 IPR038965 Transposase InsF-like VagYM4_08900 IPR001584 Integrase, catalytic core VagYM4_08900 IPR012337 Ribonuclease H-like superfamily VagYM4_08900 IPR036397 Ribonuclease H superfamily VagYM4_08920 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_08920 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_08920 IPR037420 HTH-type transcriptional activator AmpR, PBP2 VagYM4_08920 IPR005119 LysR, substrate-binding VagYM4_08920 IPR000847 Transcription regulator HTH, LysR VagYM4_08960 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site VagYM4_08960 IPR020843 Polyketide synthase, enoylreductase domain VagYM4_08960 IPR013149 Alcohol dehydrogenase, C-terminal VagYM4_08960 IPR011032 GroES-like superfamily VagYM4_08960 IPR013154 Alcohol dehydrogenase, N-terminal VagYM4_08960 IPR036291 NAD(P)-binding domain superfamily VagYM4_08990 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_08990 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_08990 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain VagYM4_08990 IPR005119 LysR, substrate-binding VagYM4_08990 IPR000847 Transcription regulator HTH, LysR VagYM4_09000 IPR001279 Metallo-beta-lactamase VagYM4_09000 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VagYM4_09010 IPR009057 Homeobox-like domain superfamily VagYM4_09010 IPR020449 Transcription regulator HTH, AraC- type VagYM4_09010 IPR011051 RmlC-like cupin domain superfamily VagYM4_09010 IPR014710 RmlC-like jelly roll fold VagYM4_09010 IPR018062 HTH domain AraC-type, conserved site VagYM4_09010 IPR018060 DNA binding HTH domain, AraC-type VagYM4_09010 IPR032783 AraC-type transcription regulator, ligand-binding domain VagYM4_09020 IPR029028 Alpha/beta knot methyltransferases VagYM4_09020 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_09020 IPR013123 RNA 2-O ribose methyltransferase, substrate binding VagYM4_09020 IPR001537 tRNA/rRNA methyltransferase, SpoU type VagYM4_09020 IPR029064 50S ribosomal protein L30e-like VagYM4_09030 IPR015875 IMP dehydrogenase / GMP reductase, conserved site VagYM4_09030 IPR001093 IMP dehydrogenase/GMP reductase VagYM4_09030 IPR000644 CBS domain VagYM4_09030 IPR005990 Inosine-5'-monophosphate dehydrogenase VagYM4_09030 IPR013785 Aldolase-type TIM barrel VagYM4_09040 IPR006121 Heavy metal-associated domain, HMA VagYM4_09040 IPR036163 Heavy metal-associated domain superfamily VagYM4_09040 IPR027256 P-type ATPase, subfamily IB VagYM4_09040 IPR001757 P-type ATPase VagYM4_09040 IPR023299 P-type ATPase, cytoplasmic domain N VagYM4_09040 IPR018303 P-type ATPase, phosphorylation site VagYM4_09040 IPR017969 Heavy-metal-associated, conserved site VagYM4_09040 IPR023214 HAD superfamily VagYM4_09040 IPR036412 HAD-like superfamily VagYM4_09040 IPR008250 P-type ATPase, A domain superfamily VagYM4_09040 IPR023298 P-type ATPase, transmembrane domain superfamily VagYM4_09050 IPR000845 Nucleoside phosphorylase domain VagYM4_09050 IPR018016 Nucleoside phosphorylase, conserved site VagYM4_09050 IPR010058 Uridine phosphorylase VagYM4_09050 IPR035994 Nucleoside phosphorylase superfamily VagYM4_09070 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_09070 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_09070 IPR003660 HAMP domain VagYM4_09080 IPR011146 HIT-like domain VagYM4_09080 IPR001310 Histidine triad (HIT) protein VagYM4_09080 IPR036265 HIT-like superfamily VagYM4_09080 IPR019808 Histidine triad, conserved site VagYM4_09110 IPR014094 Penicillin-binding protein activator LpoB VagYM4_09110 IPR012640 Membrane lipoprotein, lipid attachment site VagYM4_09120 IPR002575 Aminoglycoside phosphotransferase VagYM4_09120 IPR011009 Protein kinase-like domain superfamily VagYM4_09120 IPR014093 Thiamine kinase VagYM4_09130 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA VagYM4_09130 IPR022987 Uncharacterised protein family UPF0227 VagYM4_09130 IPR029058 Alpha/Beta hydrolase fold VagYM4_09140 IPR023753 FAD/NAD(P)-binding domain VagYM4_09140 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_09170 IPR036101 CarD-like/TRCF domain superfamily VagYM4_09170 IPR003711 CarD-like/TRCF domain VagYM4_09170 IPR011545 DEAD/DEAH box helicase domain VagYM4_09170 IPR005118 Transcription-repair-coupling factor, C-terminal domain VagYM4_09170 IPR001650 Helicase, C-terminal VagYM4_09170 IPR004576 Transcription-repair coupling factor VagYM4_09170 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09170 IPR041471 UvrB, interaction domain VagYM4_09170 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_09170 IPR037235 TRCF-like, C-terminal domain VagYM4_09190 IPR003838 ABC transporter permease protein domain VagYM4_09190 IPR025857 MacB-like periplasmic core domain VagYM4_09190 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E VagYM4_09200 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09200 IPR011924 Lipoprotein releasing system, ATP-binding protein VagYM4_09200 IPR015854 ABC transporter, lipoprotein release, LolD VagYM4_09200 IPR017871 ABC transporter, conserved site VagYM4_09200 IPR003593 AAA+ ATPase domain VagYM4_09200 IPR003439 ABC transporter-like VagYM4_09210 IPR025857 MacB-like periplasmic core domain VagYM4_09210 IPR011926 Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria type VagYM4_09210 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E VagYM4_09210 IPR003838 ABC transporter permease protein domain VagYM4_09230 IPR001279 Metallo-beta-lactamase VagYM4_09230 IPR025405 Domain of unknown function DUF4131 VagYM4_09230 IPR004797 Competence protein ComEC/Rec2 VagYM4_09230 IPR035681 ComA-like, MBL domain VagYM4_09230 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VagYM4_09230 IPR004477 ComEC/Rec2-related protein VagYM4_09240 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_09240 IPR003439 ABC transporter-like VagYM4_09240 IPR017871 ABC transporter, conserved site VagYM4_09240 IPR011917 ABC transporter, lipid A export, MsbA VagYM4_09240 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09240 IPR039421 Type I protein exporter VagYM4_09240 IPR003593 AAA+ ATPase domain VagYM4_09240 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_09250 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09250 IPR003758 Tetraacyldisaccharide 4'-kinase VagYM4_09260 IPR005651 Trm112-like VagYM4_09270 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase VagYM4_09270 IPR003329 Acylneuraminate cytidylyltransferase VagYM4_09270 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_09280 IPR007390 Sporulation stage V, protein R VagYM4_09290 IPR006698 Uncharacterised protein family UPF0229 VagYM4_09300 IPR016230 Serine-protein kinase, PrkA VagYM4_09300 IPR010650 PrkA C-terminal domain VagYM4_09300 IPR013153 PrkA AAA domain VagYM4_09300 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09310 IPR023146 YfbU, alpha-helical bundle domain superfamily VagYM4_09310 IPR005587 Uncharacterised protein family UPF0304, YfbU VagYM4_09310 IPR023145 YfbU, helix-hairpin domain superfamily VagYM4_09330 IPR001989 Radical-activating enzyme, conserved site VagYM4_09330 IPR034457 Organic radical-activating enzymes VagYM4_09330 IPR012838 Pyruvate formate-lyase 1 activating enzyme VagYM4_09330 IPR034465 Pyruvate formate-lyase activase VagYM4_09330 IPR013785 Aldolase-type TIM barrel VagYM4_09330 IPR012839 Organic radical enzyme activase VagYM4_09330 IPR007197 Radical SAM VagYM4_09350 IPR005949 Formate acetyltransferase VagYM4_09350 IPR001150 Glycine radical domain VagYM4_09350 IPR004184 Pyruvate formate lyase domain VagYM4_09350 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VagYM4_09380 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09380 IPR017871 ABC transporter, conserved site VagYM4_09380 IPR003439 ABC transporter-like VagYM4_09380 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type VagYM4_09380 IPR003593 AAA+ ATPase domain VagYM4_09390 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_09390 IPR018313 Solute-binding protein family 3, conserved site VagYM4_09390 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter VagYM4_09400 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_09400 IPR030199 Histidine transport system permease protein HisQ VagYM4_09400 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain VagYM4_09400 IPR035906 MetI-like superfamily VagYM4_09410 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain VagYM4_09410 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_09410 IPR035906 MetI-like superfamily VagYM4_09430 IPR005135 Endonuclease/exonuclease/phosphatase VagYM4_09430 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VagYM4_09430 IPR004808 AP endonuclease 1 VagYM4_09430 IPR020847 AP endonuclease 1, binding site VagYM4_09430 IPR020848 AP endonuclease 1, conserved site VagYM4_09430 IPR037493 Exodeoxyribonuclease III-like VagYM4_09440 IPR019630 Protein of unknown function DUF2496, YbaM-related VagYM4_09450 IPR010890 Primosomal replication PriB/PriC VagYM4_09450 IPR038338 PriB/PriC superfamily VagYM4_09460 IPR002781 Transmembrane protein TauE-like VagYM4_09470 IPR006555 ATP-dependent helicase, C-terminal VagYM4_09470 IPR001650 Helicase, C-terminal VagYM4_09470 IPR010614 DEAD2 VagYM4_09470 IPR039000 ATP-dependent DNA helicase DinG VagYM4_09470 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09470 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type VagYM4_09490 IPR018635 Uncharacterised protein family UPF0319 VagYM4_09500 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site VagYM4_09500 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F VagYM4_09500 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_09500 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_09500 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain VagYM4_09510 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric VagYM4_09520 IPR011129 Cold shock domain VagYM4_09520 IPR019844 Cold-shock (CSD) domain VagYM4_09520 IPR012751 CspD, cold shock VagYM4_09520 IPR002059 Cold-shock protein, DNA-binding VagYM4_09520 IPR012340 Nucleic acid-binding, OB-fold VagYM4_09520 IPR012156 Cold shock, CspA VagYM4_09530 IPR022935 ATP-dependent Clp protease adaptor protein ClpS VagYM4_09530 IPR003769 Adaptor protein ClpS, core VagYM4_09530 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VagYM4_09540 IPR001270 ClpA/B family VagYM4_09540 IPR004176 Clp, N-terminal VagYM4_09540 IPR028299 ClpA/B, conserved site 2 VagYM4_09540 IPR003593 AAA+ ATPase domain VagYM4_09540 IPR041546 ClpA/ClpB, AAA lid domain VagYM4_09540 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09540 IPR018368 ClpA/B, conserved site 1 VagYM4_09540 IPR019489 Clp ATPase, C-terminal VagYM4_09540 IPR036628 Clp, N-terminal domain superfamily VagYM4_09540 IPR003959 ATPase, AAA-type, core VagYM4_09540 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA VagYM4_09550 IPR004368 Translation initiation factor IF-1 VagYM4_09550 IPR022967 RNA-binding domain, S1 VagYM4_09550 IPR006196 RNA-binding domain, S1, IF1 type VagYM4_09550 IPR012340 Nucleic acid-binding, OB-fold VagYM4_09560 IPR007472 N-end rule aminoacyl transferase, C-terminal VagYM4_09560 IPR016181 Acyl-CoA N-acyltransferase VagYM4_09560 IPR007471 N-end aminoacyl transferase, N-terminal VagYM4_09560 IPR030700 N-end rule aminoacyl transferase VagYM4_09560 IPR017138 Aspartate/glutamate leucyltransferase VagYM4_09570 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal VagYM4_09570 IPR016181 Acyl-CoA N-acyltransferase VagYM4_09570 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase VagYM4_09590 IPR001986 Enolpyruvate transferase domain VagYM4_09590 IPR036968 Enolpyruvate transferase domain superfamily VagYM4_09590 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site VagYM4_09590 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta VagYM4_09590 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase VagYM4_09600 IPR019633 Protein of unknown function DUF2498 VagYM4_09600 IPR038191 YciN superfamily VagYM4_09610 IPR000380 DNA topoisomerase, type IA VagYM4_09610 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VagYM4_09610 IPR006171 TOPRIM domain VagYM4_09610 IPR034149 DNA topoisomerase 1, TOPRIM domain VagYM4_09610 IPR005733 DNA topoisomerase I, bacterial-type VagYM4_09610 IPR013498 DNA topoisomerase, type IA, zn finger VagYM4_09610 IPR003602 DNA topoisomerase, type IA, DNA-binding domain VagYM4_09610 IPR023405 DNA topoisomerase, type IA, core domain VagYM4_09610 IPR028612 DNA topoisomerase I, type IA VagYM4_09610 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VagYM4_09610 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type VagYM4_09610 IPR013497 DNA topoisomerase, type IA, central VagYM4_09610 IPR023406 DNA topoisomerase, type IA, active site VagYM4_09610 IPR003601 DNA topoisomerase, type IA, domain 2 VagYM4_09610 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VagYM4_09620 IPR011831 Glucose-1-phosphate adenylyltransferase VagYM4_09620 IPR005836 ADP-glucose pyrophosphorylase, conserved site VagYM4_09620 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial VagYM4_09620 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_09620 IPR011004 Trimeric LpxA-like superfamily VagYM4_09620 IPR005835 Nucleotidyl transferase domain VagYM4_09630 IPR001296 Glycosyl transferase, family 1 VagYM4_09630 IPR011835 Bacterial/plant glycogen synthase VagYM4_09630 IPR013534 Starch synthase, catalytic domain VagYM4_09670 IPR007077 TfoX, C-terminal VagYM4_09670 IPR007076 TfoX, N-terminal VagYM4_09670 IPR026256 Transcriptional regulator, TfoX/Sxy-type VagYM4_09680 IPR023588 Transcription regulator HTH, PurR VagYM4_09680 IPR028082 Periplasmic binding protein-like I VagYM4_09680 IPR000843 LacI-type HTH domain VagYM4_09680 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_09690 IPR036411 TorD-like superfamily VagYM4_09690 IPR036386 HscB, C-terminal domain superfamily VagYM4_09690 IPR020945 DMSO/Nitrate reductase chaperone VagYM4_09690 IPR023069 Chaperone TorD VagYM4_09700 IPR001789 Signal transduction response regulator, receiver domain VagYM4_09700 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_09700 IPR011006 CheY-like superfamily VagYM4_09700 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_09700 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_09710 IPR003848 Domain of unknown function DUF218 VagYM4_09720 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase VagYM4_09720 IPR025714 Methyltransferase domain VagYM4_09720 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_09730 IPR033439 Chromosome partition protein MukF, winged-helix domain VagYM4_09730 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_09730 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_09730 IPR033441 Chromosome partition protein MukF, C-terminal domain VagYM4_09730 IPR036141 MukF, middle domain superfamily VagYM4_09730 IPR038198 MukF, C-terminal domain superfamily VagYM4_09730 IPR033440 Chromosome partition protein MukF, middle domain VagYM4_09730 IPR005582 Chromosome partition protein MukF VagYM4_09740 IPR042037 MukE, C-terminal domain VagYM4_09740 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE VagYM4_09740 IPR042038 MukE, N-terminal domain VagYM4_09750 IPR007406 MukB, N-terminal domain VagYM4_09750 IPR032520 MukB, hinge domain VagYM4_09750 IPR012090 Chromosome partition protein MukB VagYM4_09750 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09790 IPR013651 ATP-grasp fold, RimK-type VagYM4_09790 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_09790 IPR021109 Aspartic peptidase domain superfamily VagYM4_09790 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX VagYM4_09790 IPR011761 ATP-grasp fold VagYM4_09790 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK VagYM4_09790 IPR041107 RimK, PreATP-grasp domain VagYM4_09800 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_09800 IPR010017 tRNA U34 carboxymethyltransferase VagYM4_09800 IPR027555 tRNA (mo5U34)-methyltransferase-like VagYM4_09810 IPR005271 Carboxy-S-adenosyl-L-methionine synthase VagYM4_09810 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_09810 IPR041698 Methyltransferase domain 25 VagYM4_09820 IPR002763 Protein of unknown function DUF72 VagYM4_09820 IPR036520 UPF0759 superfamily VagYM4_09830 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type VagYM4_09830 IPR004524 Aspartate-tRNA ligase, type 1 VagYM4_09830 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_09830 IPR012340 Nucleic acid-binding, OB-fold VagYM4_09830 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb VagYM4_09830 IPR004115 GAD-like domain superfamily VagYM4_09830 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) VagYM4_09830 IPR029351 GAD domain VagYM4_09840 IPR026564 Transcriptional regulator TACO1-like, domain 3 VagYM4_09840 IPR002876 Transcriptional regulator TACO1-like VagYM4_09840 IPR017856 Integrase-like, N-terminal VagYM4_09840 IPR029072 YebC-like VagYM4_09850 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site VagYM4_09850 IPR036397 Ribonuclease H superfamily VagYM4_09850 IPR012337 Ribonuclease H-like superfamily VagYM4_09850 IPR002176 Crossover junction endodeoxyribonuclease RuvC VagYM4_09860 IPR012340 Nucleic acid-binding, OB-fold VagYM4_09860 IPR000085 Bacterial DNA recombination protein RuvA VagYM4_09860 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial VagYM4_09860 IPR010994 RuvA domain 2-like VagYM4_09860 IPR011114 Holliday junction DNA helicase RuvA, C-terminal VagYM4_09860 IPR036267 RuvA, C-terminal domain superfamily VagYM4_09860 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 VagYM4_09870 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_09870 IPR003593 AAA+ ATPase domain VagYM4_09870 IPR008823 RuvB C-terminal winged helix domain VagYM4_09870 IPR004605 DNA helicase, Holliday junction RuvB-type VagYM4_09870 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_09870 IPR008824 RuvB-like P-loop domain VagYM4_09870 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_09870 IPR041445 RuvB, AAA lid domain VagYM4_09880 IPR002585 Cytochrome ubiquinol oxidase subunit 1 VagYM4_09890 IPR003317 Cytochrome ubiquinol oxidase subunit 2 VagYM4_09900 IPR011724 Cyd operon protein YbgT VagYM4_09900 IPR012994 Membrane bound YbgT-like VagYM4_09920 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family VagYM4_09920 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase VagYM4_09920 IPR006683 Thioesterase domain VagYM4_09920 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site VagYM4_09920 IPR029069 HotDog domain superfamily VagYM4_09930 IPR014163 Tol-Pal system, TolQ VagYM4_09930 IPR002898 MotA/TolQ/ExbB proton channel VagYM4_09940 IPR003400 Biopolymer transport protein ExbD/TolR VagYM4_09940 IPR014168 Tol-Pal system protein TolR VagYM4_09960 IPR011659 WD40-like Beta Propeller VagYM4_09960 IPR007195 TolB, N-terminal VagYM4_09960 IPR036752 TolB, N-terminal domain superfamily VagYM4_09960 IPR011042 Six-bladed beta-propeller, TolB-like VagYM4_09960 IPR014167 Tol-Pal system protein TolB VagYM4_09970 IPR006664 Outer membrane protein, bacterial VagYM4_09970 IPR036737 OmpA-like domain superfamily VagYM4_09970 IPR039001 Peptidoglycan-associated lipoprotein VagYM4_09970 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal VagYM4_09970 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_09970 IPR006665 OmpA-like domain VagYM4_09980 IPR019734 Tetratricopeptide repeat VagYM4_09980 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_09980 IPR014162 Cell division coordinator CpoB, C-terminal VagYM4_09980 IPR034706 Cell division coordinator CpoB VagYM4_09980 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_09980 IPR032519 YbgF, trimerisation domain VagYM4_09990 IPR023513 Quinolinate synthase A, type 1 VagYM4_09990 IPR036094 Quinolinate synthetase A superfamily VagYM4_09990 IPR003473 Quinolinate synthetase A VagYM4_10010 IPR007140 Protein of unknown function DUF350 VagYM4_10030 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_10030 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain VagYM4_10050 IPR015387 LuxQ, periplasmic VagYM4_10050 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_10050 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_10050 IPR005467 Histidine kinase domain VagYM4_10050 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_10050 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_10050 IPR011006 CheY-like superfamily VagYM4_10050 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_10050 IPR001789 Signal transduction response regulator, receiver domain VagYM4_10050 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_10060 IPR010574 L-alanine exporter AlaE VagYM4_10070 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_10070 IPR003660 HAMP domain VagYM4_10080 IPR006143 RND efflux pump, membrane fusion protein VagYM4_10080 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_10090 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_10090 IPR001036 Acriflavin resistance protein VagYM4_10090 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 VagYM4_10120 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_10120 IPR002305 Aminoacyl-tRNA synthetase, class Ic VagYM4_10120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_10120 IPR002306 Tryptophan-tRNA ligase VagYM4_10120 IPR024109 Tryptophan-tRNA ligase, bacterial-type VagYM4_10140 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VagYM4_10140 IPR017766 Sphingomyelinase C/phospholipase C VagYM4_10140 IPR005135 Endonuclease/exonuclease/phosphatase VagYM4_10160 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_10160 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_10160 IPR003660 HAMP domain VagYM4_10160 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VagYM4_10170 IPR010386 tRNA-hydroxylase MiaE VagYM4_10170 IPR009078 Ferritin-like superfamily VagYM4_10170 IPR012347 Ferritin-like VagYM4_10190 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_10190 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_10190 IPR005119 LysR, substrate-binding VagYM4_10190 IPR000847 Transcription regulator HTH, LysR VagYM4_10210 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VagYM4_10210 IPR008141 Alanine dehydrogenase VagYM4_10210 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VagYM4_10210 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 VagYM4_10210 IPR036291 NAD(P)-binding domain superfamily VagYM4_10220 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_10220 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_10220 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VagYM4_10220 IPR011991 ArsR-like helix-turn-helix domain VagYM4_10220 IPR019888 Transcription regulator AsnC-type VagYM4_10220 IPR011008 Dimeric alpha-beta barrel VagYM4_10220 IPR000485 AsnC-type HTH domain VagYM4_10220 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VagYM4_10230 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_10230 IPR041027 FtsK alpha domain VagYM4_10230 IPR002543 FtsK domain VagYM4_10230 IPR018541 FtsK gamma domain VagYM4_10230 IPR025199 DNA translocase FtsK, 4TM region VagYM4_10230 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_10230 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_10240 IPR004564 Outer membrane lipoprotein carrier protein LolA-like VagYM4_10240 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria VagYM4_10240 IPR029046 Lipoprotein localisation LolA/LolB/LppX VagYM4_10250 IPR003959 ATPase, AAA-type, core VagYM4_10250 IPR032423 AAA C-terminal domain VagYM4_10250 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal VagYM4_10250 IPR003593 AAA+ ATPase domain VagYM4_10250 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_10250 IPR021886 MgsA AAA+ ATPase C-terminal VagYM4_10260 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) VagYM4_10260 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_10260 IPR002317 Serine-tRNA ligase, type1 VagYM4_10260 IPR015866 Serine-tRNA synthetase, type1, N-terminal VagYM4_10260 IPR033729 Serine-tRNA ligase catalytic core domain VagYM4_10260 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm VagYM4_10260 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily VagYM4_10290 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_10290 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_10290 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_10290 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA VagYM4_10290 IPR005814 Aminotransferase class-III VagYM4_10300 IPR006638 Elp3/MiaB/NifB VagYM4_10300 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB VagYM4_10300 IPR013785 Aldolase-type TIM barrel VagYM4_10300 IPR010722 Biotin and thiamin synthesis-associated domain VagYM4_10300 IPR007197 Radical SAM VagYM4_10300 IPR024177 Biotin synthase VagYM4_10310 IPR004839 Aminotransferase, class I/classII VagYM4_10310 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_10310 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_10310 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_10310 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria VagYM4_10310 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type VagYM4_10310 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site VagYM4_10320 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_10320 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_10320 IPR029058 Alpha/Beta hydrolase fold VagYM4_10320 IPR013216 Methyltransferase type 11 VagYM4_10320 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC VagYM4_10330 IPR004472 Dethiobiotin synthase BioD VagYM4_10330 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_10350 IPR001915 Peptidase M48 VagYM4_10350 IPR022919 Peptidase M48, protease HtpX, putative VagYM4_10380 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_10380 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_10380 IPR036291 NAD(P)-binding domain superfamily VagYM4_10410 IPR003333 Mycolic acid cyclopropane synthase VagYM4_10410 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_10430 IPR016087 Chalcone isomerase VagYM4_10450 IPR000362 Fumarate lyase family VagYM4_10450 IPR004769 Adenylosuccinate lyase VagYM4_10450 IPR024083 Fumarase/histidase, N-terminal VagYM4_10450 IPR020557 Fumarate lyase, conserved site VagYM4_10450 IPR013539 Adenylosuccinate lyase PurB, C-terminal VagYM4_10450 IPR022761 Fumarate lyase, N-terminal VagYM4_10450 IPR008948 L-Aspartase-like VagYM4_10460 IPR035932 HflD-like superfamily VagYM4_10460 IPR007451 High frequency lysogenization protein HflD VagYM4_10470 IPR004506 tRNA-specific 2-thiouridylase VagYM4_10470 IPR023382 Adenine nucleotide alpha hydrolase-like domains VagYM4_10470 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_10490 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site VagYM4_10490 IPR029056 Ribokinase-like VagYM4_10490 IPR011611 Carbohydrate kinase PfkB VagYM4_10500 IPR027444 Histone-like protein H-NS, C-terminal domain VagYM4_10500 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily VagYM4_10500 IPR001801 Histone-like protein H-NS VagYM4_10500 IPR027454 Histone-like protein H-NS, N-terminal VagYM4_10510 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal VagYM4_10520 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_10520 IPR011006 CheY-like superfamily VagYM4_10520 IPR009057 Homeobox-like domain superfamily VagYM4_10520 IPR002197 DNA binding HTH domain, Fis-type VagYM4_10520 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_10520 IPR001789 Signal transduction response regulator, receiver domain VagYM4_10520 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_10520 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_10520 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_10520 IPR003593 AAA+ ATPase domain VagYM4_10530 IPR001348 ATP phosphoribosyltransferase HisG VagYM4_10530 IPR018198 ATP phosphoribosyltransferase, conserved site VagYM4_10530 IPR011322 Nitrogen regulatory PII-like, alpha/beta VagYM4_10530 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VagYM4_10530 IPR013115 Histidine biosynthesis HisG, C-terminal VagYM4_10530 IPR020621 ATP phosphoribosyltransferase HisG, long form VagYM4_10530 IPR013820 ATP phosphoribosyltransferase, catalytic domain VagYM4_10540 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_10540 IPR001692 Histidinol dehydrogenase, conserved site VagYM4_10540 IPR012131 Histidinol dehydrogenase VagYM4_10540 IPR022695 Histidinol dehydrogenase, monofunctional VagYM4_10550 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site VagYM4_10550 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_10550 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_10550 IPR005861 Histidinol-phosphate aminotransferase family VagYM4_10550 IPR004839 Aminotransferase, class I/classII VagYM4_10550 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_10560 IPR006549 HAD-superfamily hydrolase,subfamily IIIA VagYM4_10560 IPR023214 HAD superfamily VagYM4_10560 IPR020566 Histidine biosynthesis bifunctional protein HisB VagYM4_10560 IPR036412 HAD-like superfamily VagYM4_10560 IPR006543 Histidinol-phosphate phosphatase VagYM4_10560 IPR005954 Histidinol-phosphatase VagYM4_10560 IPR013954 Polynucleotide kinase 3 phosphatase VagYM4_10560 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_10560 IPR000807 Imidazoleglycerol-phosphate dehydratase VagYM4_10560 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily VagYM4_10560 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site VagYM4_10570 IPR010139 Imidazole glycerol phosphate synthase, subunit H VagYM4_10570 IPR017926 Glutamine amidotransferase VagYM4_10570 IPR029062 Class I glutamine amidotransferase-like VagYM4_10580 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase VagYM4_10580 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA VagYM4_10580 IPR006062 Histidine biosynthesis VagYM4_10580 IPR013785 Aldolase-type TIM barrel VagYM4_10580 IPR011060 Ribulose-phosphate binding barrel VagYM4_10590 IPR013785 Aldolase-type TIM barrel VagYM4_10590 IPR006062 Histidine biosynthesis VagYM4_10590 IPR011060 Ribulose-phosphate binding barrel VagYM4_10590 IPR004651 Histidine biosynthesis, HisF VagYM4_10600 IPR023019 Histidine biosynthesis bifunctional protein HisIE VagYM4_10600 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase VagYM4_10600 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like VagYM4_10600 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain VagYM4_10600 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily VagYM4_10630 IPR005694 Efflux pump membrane protein VagYM4_10630 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_10630 IPR030196 Multidrug resistance protein MdtN VagYM4_10640 IPR005119 LysR, substrate-binding VagYM4_10640 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_10640 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_10640 IPR000847 Transcription regulator HTH, LysR VagYM4_10680 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_10680 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_10680 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_10680 IPR005467 Histidine kinase domain VagYM4_10680 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_10680 IPR003660 HAMP domain VagYM4_10680 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_10690 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_10690 IPR001789 Signal transduction response regulator, receiver domain VagYM4_10690 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_10690 IPR011006 CheY-like superfamily VagYM4_10690 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_10700 IPR003660 HAMP domain VagYM4_10700 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_10730 IPR020612 Methylthiotransferase, conserved site VagYM4_10730 IPR007197 Radical SAM VagYM4_10730 IPR023404 Radical SAM, alpha/beta horseshoe VagYM4_10730 IPR022946 Uncharacterised protein family UPF0313 VagYM4_10730 IPR024560 Uncharacterised protein family UPF0313, C-terminal VagYM4_10730 IPR013704 Uncharacterised protein family UPF0313, N-terminal VagYM4_10730 IPR006638 Elp3/MiaB/NifB VagYM4_10740 IPR001633 EAL domain VagYM4_10740 IPR029787 Nucleotide cyclase VagYM4_10740 IPR000160 GGDEF domain VagYM4_10740 IPR000700 PAS-associated, C-terminal VagYM4_10740 IPR013655 PAS fold-3 VagYM4_10740 IPR013656 PAS fold-4 VagYM4_10740 IPR035965 PAS domain superfamily VagYM4_10740 IPR001610 PAC motif VagYM4_10740 IPR000014 PAS domain VagYM4_10740 IPR035919 EAL domain superfamily VagYM4_10770 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain VagYM4_10770 IPR000847 Transcription regulator HTH, LysR VagYM4_10770 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_10770 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_10770 IPR005119 LysR, substrate-binding VagYM4_10780 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal VagYM4_10780 IPR006276 Cobalamin-independent methionine synthase VagYM4_10780 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal VagYM4_10780 IPR038071 UROD/MetE-like superfamily VagYM4_10800 IPR005545 YCII-related VagYM4_10800 IPR011008 Dimeric alpha-beta barrel VagYM4_10810 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain VagYM4_10810 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase VagYM4_10810 IPR029069 HotDog domain superfamily VagYM4_10810 IPR006683 Thioesterase domain VagYM4_10820 IPR006008 Intracellular septation protein A VagYM4_10840 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_10840 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_10840 IPR011006 CheY-like superfamily VagYM4_10840 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_10840 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_10840 IPR005467 Histidine kinase domain VagYM4_10840 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_10840 IPR001789 Signal transduction response regulator, receiver domain VagYM4_10850 IPR035304 Acyl homoserine lactone synthase VagYM4_10860 IPR036458 Sodium:dicarboxylate symporter superfamily VagYM4_10860 IPR018107 Sodium:dicarboxylate symporter, conserved site VagYM4_10860 IPR023954 C4-dicarboxylate transport protein VagYM4_10860 IPR001991 Sodium:dicarboxylate symporter VagYM4_10870 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_10870 IPR025110 AMP-binding enzyme, C-terminal domain VagYM4_10870 IPR020459 AMP-binding VagYM4_10870 IPR020845 AMP-binding, conserved site VagYM4_10870 IPR000873 AMP-dependent synthetase/ligase VagYM4_10880 IPR018490 Cyclic nucleotide-binding-like VagYM4_10880 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_10880 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_10880 IPR018335 Transcription regulator HTH, Crp-type, conserved site VagYM4_10880 IPR014710 RmlC-like jelly roll fold VagYM4_10880 IPR000595 Cyclic nucleotide-binding domain VagYM4_10880 IPR012318 Crp-type HTH domain VagYM4_10890 IPR011060 Ribulose-phosphate binding barrel VagYM4_10890 IPR013785 Aldolase-type TIM barrel VagYM4_10890 IPR018204 Tryptophan synthase, alpha chain, active site VagYM4_10890 IPR002028 Tryptophan synthase, alpha chain VagYM4_10900 IPR023026 Tryptophan synthase beta chain/beta chain-like VagYM4_10900 IPR001926 Pyridoxal-phosphate dependent enzyme VagYM4_10900 IPR006653 Tryptophan synthase, beta chain, conserved site VagYM4_10900 IPR006654 Tryptophan synthase, beta chain VagYM4_10900 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VagYM4_10910 IPR013785 Aldolase-type TIM barrel VagYM4_10910 IPR013798 Indole-3-glycerol phosphate synthase VagYM4_10910 IPR011060 Ribulose-phosphate binding barrel VagYM4_10910 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) VagYM4_10910 IPR001468 Indole-3-glycerol phosphate synthase, conserved site VagYM4_10920 IPR017459 Glycosyl transferase family 3, N-terminal domain VagYM4_10920 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily VagYM4_10920 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily VagYM4_10920 IPR000312 Glycosyl transferase, family 3 VagYM4_10920 IPR005940 Anthranilate phosphoribosyl transferase VagYM4_10930 IPR017926 Glutamine amidotransferase VagYM4_10930 IPR029062 Class I glutamine amidotransferase-like VagYM4_10930 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain VagYM4_10940 IPR005801 ADC synthase VagYM4_10940 IPR015890 Chorismate-utilising enzyme, C-terminal VagYM4_10940 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial VagYM4_10940 IPR006805 Anthranilate synthase component I, N-terminal VagYM4_10940 IPR019999 Anthranilate synthase component I-like VagYM4_10950 IPR012639 Tryptophan operon leader peptide VagYM4_10960 IPR016195 Polymerase/histidinol phosphatase-like VagYM4_10960 IPR004013 PHP domain VagYM4_10960 IPR003141 Polymerase/histidinol phosphatase, N-terminal VagYM4_10970 IPR006070 YrdC-like domain VagYM4_10970 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VagYM4_11000 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain VagYM4_11000 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_11000 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_11000 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F VagYM4_11000 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site VagYM4_11000 IPR002942 RNA-binding S4 domain VagYM4_11000 IPR036986 RNA-binding S4 domain superfamily VagYM4_11010 IPR007376 dsDNA mimic, putative VagYM4_11010 IPR036763 Putative dsDNA mimic superfamily VagYM4_11020 IPR008991 Translation protein SH3-like domain superfamily VagYM4_11020 IPR013852 Translation elongation factor P/YeiP, conserved site VagYM4_11020 IPR001059 Translation elongation factor P/YeiP, central VagYM4_11020 IPR011897 Translation elongation factor P-like, YeiP VagYM4_11020 IPR013185 Translation elongation factor, KOW-like VagYM4_11020 IPR020599 Translation elongation factor P/YeiP VagYM4_11020 IPR014722 Ribosomal protein L2, domain 2 VagYM4_11020 IPR012340 Nucleic acid-binding, OB-fold VagYM4_11020 IPR015365 Elongation factor P, C-terminal VagYM4_11040 IPR017964 DNA-directed DNA polymerase, family B, conserved site VagYM4_11040 IPR036397 Ribonuclease H superfamily VagYM4_11040 IPR012337 Ribonuclease H-like superfamily VagYM4_11040 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain VagYM4_11040 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain VagYM4_11040 IPR006172 DNA-directed DNA polymerase, family B VagYM4_11040 IPR042087 DNA polymerase family B, C-terminal domain VagYM4_11040 IPR023211 DNA polymerase, palm domain superfamily VagYM4_11050 IPR011006 CheY-like superfamily VagYM4_11050 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_11050 IPR001789 Signal transduction response regulator, receiver domain VagYM4_11050 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_11060 IPR001162 UvrC family homology region VagYM4_11060 IPR001943 UVR domain VagYM4_11060 IPR004791 UvrABC system, subunit C VagYM4_11060 IPR036876 UVR domain superfamily VagYM4_11060 IPR038476 UvrC homology region 2 superfamily VagYM4_11060 IPR000305 GIY-YIG endonuclease VagYM4_11060 IPR035901 GIY-YIG endonuclease superfamily VagYM4_11060 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 VagYM4_11060 IPR010994 RuvA domain 2-like VagYM4_11070 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase VagYM4_11070 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial VagYM4_11070 IPR000462 CDP-alcohol phosphatidyltransferase VagYM4_11080 IPR004637 2,4-diaminobutyrate 4-transaminase VagYM4_11080 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_11080 IPR005814 Aminotransferase class-III VagYM4_11080 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_11080 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_11090 IPR032095 Saccharopine dehydrogenase, C-terminal VagYM4_11090 IPR005097 Saccharopine dehydrogenase, NADP binding domain VagYM4_11090 IPR036291 NAD(P)-binding domain superfamily VagYM4_11100 IPR029066 PLP-binding barrel VagYM4_11100 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal VagYM4_11100 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal VagYM4_11100 IPR005730 Carboxynorspermidine decarboxylase VagYM4_11130 IPR036425 MoaB/Mog-like domain superfamily VagYM4_11130 IPR001453 MoaB/Mog domain VagYM4_11130 IPR008135 Competence-induced protein CinA VagYM4_11130 IPR036653 CinA-like, C-terminal VagYM4_11150 IPR030475 Ribonucleotide reductase small subunit, acitve site VagYM4_11150 IPR009078 Ferritin-like superfamily VagYM4_11150 IPR000358 Ribonucleotide reductase small subunit family VagYM4_11150 IPR012348 Ribonucleotide reductase-like VagYM4_11150 IPR033909 Ribonucleotide reductase small subunit VagYM4_11160 IPR039718 Ribonucleoside-diphosphate reductase large subunit VagYM4_11160 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal VagYM4_11160 IPR013509 Ribonucleotide reductase large subunit, N-terminal VagYM4_11160 IPR000788 Ribonucleotide reductase large subunit, C-terminal VagYM4_11160 IPR013346 Ribonucleotide reductase, class I , alpha subunit VagYM4_11160 IPR005144 ATP-cone domain VagYM4_11170 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_11170 IPR010233 Ubiquinone biosynthesis O-methyltransferase VagYM4_11190 IPR005743 DNA gyrase, subunit A VagYM4_11190 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat VagYM4_11190 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal VagYM4_11190 IPR013760 DNA topoisomerase, type IIA-like domain superfamily VagYM4_11190 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal VagYM4_11190 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta VagYM4_11190 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily VagYM4_11220 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit VagYM4_11220 IPR003321 Cytochrome c552 VagYM4_11220 IPR011031 Multihaem cytochrome VagYM4_11220 IPR036280 Multiheme cytochrome superfamily VagYM4_11240 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_11240 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_11240 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_11240 IPR017567 Cytochrome c nitrite reductase, Fe-S protein VagYM4_11250 IPR005614 NrfD family VagYM4_11250 IPR017566 NrfD VagYM4_11260 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal VagYM4_11260 IPR003570 Cytochrome c-type biogenesis protein NrfE VagYM4_11260 IPR003567 Cytochrome c-type biogenesis protein VagYM4_11260 IPR003568 Cytochrome c-type biogenesis protein CcmF VagYM4_11260 IPR017563 Cytochrome c nitrate reductase biogenesis protein NrfE VagYM4_11260 IPR002541 Cytochrome c assembly protein VagYM4_11270 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE VagYM4_11270 IPR013740 Redoxin VagYM4_11270 IPR036249 Thioredoxin-like superfamily VagYM4_11270 IPR013766 Thioredoxin domain VagYM4_11270 IPR017937 Thioredoxin, conserved site VagYM4_11280 IPR005616 CcmH/CycL/Ccl2/NrfF family VagYM4_11280 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_11280 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF VagYM4_11280 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_11280 IPR019734 Tetratricopeptide repeat VagYM4_11280 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily VagYM4_11300 IPR036144 RibA-like superfamily VagYM4_11300 IPR000926 GTP cyclohydrolase II, RibA VagYM4_11300 IPR032677 GTP cyclohydrolase II VagYM4_11350 IPR038063 L,D-transpeptidase catalytic domain-like VagYM4_11350 IPR002477 Peptidoglycan binding-like VagYM4_11350 IPR005490 L,D-transpeptidase catalytic domain VagYM4_11350 IPR036365 PGBD-like superfamily VagYM4_11360 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_11360 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily VagYM4_11360 IPR010275 Protein of unknown function DUF882 VagYM4_11370 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VagYM4_11370 IPR001279 Metallo-beta-lactamase VagYM4_11400 IPR026289 Solute binding protein, TakP-like VagYM4_11400 IPR038404 TRAP transporter solute receptor DctP superfamily VagYM4_11400 IPR041722 Alpha-keto acid binding periplasmic protein VagYM4_11400 IPR018389 TRAP transporter solute receptor DctP/TeaA VagYM4_11420 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VagYM4_11420 IPR004681 TRAP transporter large membrane protein DctM VagYM4_11430 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_11430 IPR017171 Signal transduction histidine kinase, MctS VagYM4_11430 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain VagYM4_11430 IPR033480 Single Cache domain 2 VagYM4_11430 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_11440 IPR011006 CheY-like superfamily VagYM4_11440 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_11440 IPR001789 Signal transduction response regulator, receiver domain VagYM4_11440 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_11460 IPR018093 BCCT transporter, conserved site VagYM4_11460 IPR000060 BCCT transporter family VagYM4_11470 IPR003660 HAMP domain VagYM4_11470 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_11510 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site VagYM4_11510 IPR000796 Aspartate/other aminotransferase VagYM4_11510 IPR004839 Aminotransferase, class I/classII VagYM4_11510 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_11510 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_11510 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_11540 IPR000524 Transcription regulator HTH, GntR VagYM4_11540 IPR004839 Aminotransferase, class I/classII VagYM4_11540 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_11540 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_11540 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_11540 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_11540 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_11560 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb VagYM4_11560 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_11560 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) VagYM4_11560 IPR012340 Nucleic acid-binding, OB-fold VagYM4_11560 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type VagYM4_11560 IPR004522 Asparagine-tRNA ligase VagYM4_11570 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_11570 IPR003660 HAMP domain VagYM4_11570 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_11570 IPR033480 Single Cache domain 2 VagYM4_11590 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family VagYM4_11590 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily VagYM4_11610 IPR007024 BLUF domain VagYM4_11610 IPR036046 Acylphosphatase-like domain superfamily VagYM4_11610 IPR001633 EAL domain VagYM4_11610 IPR035919 EAL domain superfamily VagYM4_11620 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form VagYM4_11620 IPR005131 Serine dehydratase beta chain VagYM4_11620 IPR029009 Allosteric substrate binding domain superfamily VagYM4_11620 IPR005130 Serine dehydratase-like, alpha subunit VagYM4_11630 IPR018227 Amino acid/polyamine transporter 2 VagYM4_11630 IPR004694 Hydroxy amino acid transporter VagYM4_11640 IPR000059 NUDIX hydrolase, NudL, conserved site VagYM4_11640 IPR000086 NUDIX hydrolase domain VagYM4_11640 IPR015797 NUDIX hydrolase-like domain superfamily VagYM4_11640 IPR023735 Uncharacterised nudix hydrolase NudL VagYM4_11660 IPR011006 CheY-like superfamily VagYM4_11660 IPR005467 Histidine kinase domain VagYM4_11660 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_11660 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_11660 IPR001789 Signal transduction response regulator, receiver domain VagYM4_11660 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_11660 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_11660 IPR035965 PAS domain superfamily VagYM4_11660 IPR015387 LuxQ, periplasmic VagYM4_11660 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_11660 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_11670 IPR005801 ADC synthase VagYM4_11670 IPR006805 Anthranilate synthase component I, N-terminal VagYM4_11670 IPR015890 Chorismate-utilising enzyme, C-terminal VagYM4_11670 IPR005802 Aminodeoxychorismate synthase, component I VagYM4_11670 IPR019999 Anthranilate synthase component I-like VagYM4_11700 IPR007413 Protein of unknown function DUF463, YcjX-like protein VagYM4_11710 IPR006507 Uncharacterised protein family UPF0283 VagYM4_11710 IPR021147 Protein of unknown function DUF697 VagYM4_11720 IPR002912 ACT domain VagYM4_11720 IPR030828 TyrR family, helix-turn-helix domain VagYM4_11720 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_11720 IPR009057 Homeobox-like domain superfamily VagYM4_11720 IPR003593 AAA+ ATPase domain VagYM4_11720 IPR000014 PAS domain VagYM4_11720 IPR035965 PAS domain superfamily VagYM4_11720 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_11720 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_11720 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_11720 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_11730 IPR016181 Acyl-CoA N-acyltransferase VagYM4_11730 IPR000182 GNAT domain VagYM4_11760 IPR010998 Integrase/recombinase, N-terminal VagYM4_11760 IPR011946 Integrase, integron-type VagYM4_11760 IPR002104 Integrase, catalytic domain VagYM4_11760 IPR013762 Integrase-like, catalytic domain superfamily VagYM4_11760 IPR011010 DNA breaking-rejoining enzyme, catalytic core VagYM4_11760 IPR004107 Integrase, SAM-like, N-terminal VagYM4_12160 IPR001584 Integrase, catalytic core VagYM4_12160 IPR038965 Transposase InsF-like VagYM4_12160 IPR036397 Ribonuclease H superfamily VagYM4_12160 IPR012337 Ribonuclease H-like superfamily VagYM4_12170 IPR009057 Homeobox-like domain superfamily VagYM4_12170 IPR002514 Transposase IS3/IS911family VagYM4_12180 IPR034746 POTRA domain VagYM4_12180 IPR000184 Bacterial surface antigen (D15) VagYM4_12180 IPR010827 POTRA domain, BamA/TamA-like VagYM4_12180 IPR039910 Surface antigen D15-like VagYM4_12180 IPR035243 TamA, POTRA domain 1 VagYM4_12190 IPR030871 Cardiolipin synthase C VagYM4_12190 IPR001736 Phospholipase D/Transphosphatidylase VagYM4_12190 IPR025202 Phospholipase D-like domain VagYM4_12200 IPR002018 Carboxylesterase, type B VagYM4_12200 IPR019826 Carboxylesterase type B, active site VagYM4_12200 IPR019819 Carboxylesterase type B, conserved site VagYM4_12200 IPR029058 Alpha/Beta hydrolase fold VagYM4_12200 IPR000997 Cholinesterase VagYM4_12250 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VagYM4_12250 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA VagYM4_12250 IPR006143 RND efflux pump, membrane fusion protein VagYM4_12270 IPR006512 YidE/YbjL duplication VagYM4_12270 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_12270 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_12270 IPR022457 Aspartate-alanine antiporter VagYM4_12280 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site VagYM4_12280 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_12280 IPR004839 Aminotransferase, class I/classII VagYM4_12280 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_12280 IPR022518 Aspartate 4-decarboxylase VagYM4_12280 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_12290 IPR023685 Pyridoxal kinase PdxY VagYM4_12290 IPR004625 Pyridoxine kinase VagYM4_12290 IPR029056 Ribokinase-like VagYM4_12290 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase VagYM4_12320 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_12320 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_12320 IPR000847 Transcription regulator HTH, LysR VagYM4_12320 IPR005119 LysR, substrate-binding VagYM4_12380 IPR022161 DNA helicase IV, N-terminal domain VagYM4_12380 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_12380 IPR034739 UvrD/AddA helicase, N-terminal VagYM4_12380 IPR014017 UvrD-like DNA helicase, C-terminal VagYM4_12380 IPR000212 DNA helicase, UvrD/REP type VagYM4_12380 IPR014016 UvrD-like helicase, ATP-binding domain VagYM4_12390 IPR038965 Transposase InsF-like VagYM4_12390 IPR001584 Integrase, catalytic core VagYM4_12390 IPR012337 Ribonuclease H-like superfamily VagYM4_12390 IPR036397 Ribonuclease H superfamily VagYM4_12410 IPR025217 Domain of unknown function DUF3944 VagYM4_12410 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 VagYM4_12480 IPR009387 Toxin HigB-2 VagYM4_12490 IPR032758 Antitoxin MqsA/HigA-2 VagYM4_12490 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_12490 IPR001387 Cro/C1-type helix-turn-helix domain VagYM4_12560 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VagYM4_12560 IPR006143 RND efflux pump, membrane fusion protein VagYM4_12560 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA VagYM4_12590 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_12620 IPR039506 SpoOB, alpha-helical domain VagYM4_12620 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB VagYM4_12620 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_12620 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_12620 IPR033463 Single cache domain 3 VagYM4_12620 IPR013767 PAS fold VagYM4_12620 IPR000014 PAS domain VagYM4_12620 IPR005467 Histidine kinase domain VagYM4_12620 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_12620 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_12620 IPR035965 PAS domain superfamily VagYM4_12630 IPR011006 CheY-like superfamily VagYM4_12630 IPR024187 Signal transduction response regulator, citrate/malate metabolism VagYM4_12630 IPR001789 Signal transduction response regulator, receiver domain VagYM4_12630 IPR028141 Transcriptional regulator VagYM4_12640 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_12640 IPR039423 TonB-dependent receptor-like VagYM4_12640 IPR012910 TonB-dependent receptor, plug domain VagYM4_12640 IPR010105 TonB-dependent siderophore receptor VagYM4_12640 IPR010917 TonB-dependent receptor, conserved site VagYM4_12640 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_12640 IPR010916 TonB box, conserved site VagYM4_12640 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_12650 IPR018062 HTH domain AraC-type, conserved site VagYM4_12650 IPR009057 Homeobox-like domain superfamily VagYM4_12650 IPR018060 DNA binding HTH domain, AraC-type VagYM4_12660 IPR036291 NAD(P)-binding domain superfamily VagYM4_12660 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding VagYM4_12660 IPR019796 Glucose-6-phosphate dehydrogenase, active site VagYM4_12660 IPR001282 Glucose-6-phosphate dehydrogenase VagYM4_12660 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal VagYM4_12670 IPR005900 6-phosphogluconolactonase, DevB-type VagYM4_12670 IPR037171 NagB/RpiA transferase-like VagYM4_12670 IPR039104 6-Phosphogluconolactonase VagYM4_12670 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase VagYM4_12680 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_12680 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding VagYM4_12680 IPR006114 6-phosphogluconate dehydrogenase, C-terminal VagYM4_12680 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating VagYM4_12680 IPR006184 6-phosphogluconate-binding site VagYM4_12680 IPR036291 NAD(P)-binding domain superfamily VagYM4_12680 IPR006183 6-phosphogluconate dehydrogenase VagYM4_12680 IPR013328 6-phosphogluconate dehydrogenase, domain 2 VagYM4_12710 IPR002197 DNA binding HTH domain, Fis-type VagYM4_12710 IPR009057 Homeobox-like domain superfamily VagYM4_12710 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_12710 IPR003593 AAA+ ATPase domain VagYM4_12710 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_12710 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_12710 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_12710 IPR003018 GAF domain VagYM4_12710 IPR029016 GAF-like domain superfamily VagYM4_12710 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_12720 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_12720 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_12720 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_12720 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_12720 IPR015590 Aldehyde dehydrogenase domain VagYM4_12720 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_12760 IPR014710 RmlC-like jelly roll fold VagYM4_12760 IPR009057 Homeobox-like domain superfamily VagYM4_12760 IPR018060 DNA binding HTH domain, AraC-type VagYM4_12760 IPR018062 HTH domain AraC-type, conserved site VagYM4_12760 IPR020449 Transcription regulator HTH, AraC- type VagYM4_12790 IPR003522 Type III secretion system outer membrane pore YscC/HrcC VagYM4_12790 IPR004846 Type II/III secretion system VagYM4_12790 IPR004845 Type II secretion system GspD, conserved site VagYM4_12790 IPR005644 NolW-like VagYM4_12790 IPR038591 NolW-like superfamily VagYM4_12800 IPR012843 Type III secretion system YscD/HrpQ VagYM4_12800 IPR008984 SMAD/FHA domain superfamily VagYM4_12800 IPR000253 Forkhead-associated (FHA) domain VagYM4_12800 IPR032034 Yop protein translocation protein D, periplasmic domain VagYM4_12800 IPR032030 YscD, cytoplasmic domain VagYM4_12820 IPR021123 Type III secretion, needle-protein-like VagYM4_12820 IPR037203 Type III secretion, needle-protein-like superfamily VagYM4_12820 IPR011841 Type III secretion system, needle protein VagYM4_12830 IPR013348 Type III secretion system YscG VagYM4_12830 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_12850 IPR012670 Type III secretion system, YscI/HrpB VagYM4_12860 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ VagYM4_12860 IPR006182 Secretory protein YscJ/FliF VagYM4_12880 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE VagYM4_12880 IPR012842 Type III secretion system HrpE/YscL VagYM4_12900 IPR003812 Fido domain VagYM4_12900 IPR036597 Fido-like domain superfamily VagYM4_12960 IPR036291 NAD(P)-binding domain superfamily VagYM4_12960 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_12960 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_12980 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VagYM4_13000 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VagYM4_13000 IPR009057 Homeobox-like domain superfamily VagYM4_13000 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_13000 IPR013571 Transcription regulator QacR, C-terminal VagYM4_13000 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_13010 IPR029025 Type III secretion system substrate exporter, C-terminal VagYM4_13010 IPR006135 Type III secretion system substrate exporter VagYM4_13010 IPR006307 Type III exporter system, secretion apparatus protein BsaZ VagYM4_13020 IPR002010 Type III secretion system inner membrane R protein VagYM4_13020 IPR006304 Type III secretion protein SpaR/YscT VagYM4_13030 IPR002191 Bacterial export protein family 3 VagYM4_13030 IPR006306 Type III secretion protein HrpO VagYM4_13040 IPR005838 Type III secretion system inner membrane P protein VagYM4_13040 IPR005773 Yop virulence translocation protein R VagYM4_13050 IPR013385 Type III secretion system apparatus protein YscQ/HrcQ/SpaO VagYM4_13050 IPR003283 Type III secretion system outer membrane, SpaO VagYM4_13050 IPR001543 Surface presentation of antigen (SpoA) VagYM4_13050 IPR036429 SpoA-like superfamily VagYM4_13080 IPR013380 ATPase, type III secretion system, H+-transporting VagYM4_13080 IPR040627 T3SS EscN ATPase, C-terminal VagYM4_13080 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_13080 IPR003593 AAA+ ATPase domain VagYM4_13080 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain VagYM4_13080 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain VagYM4_13080 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site VagYM4_13080 IPR005714 ATPase, type III secretion system, FliI/YscN VagYM4_13100 IPR015144 Type III secretion system effector delivery regulator TyeA VagYM4_13100 IPR038347 TyeA superfamily VagYM4_13100 IPR013351 Type III secretion system effector delivery regulator TyeA-related VagYM4_13140 IPR001712 Type III secretion system FHIPEP VagYM4_13140 IPR025505 FHIPEP conserved site VagYM4_13140 IPR042196 FHIPEP, domain 4 VagYM4_13140 IPR042193 FHIPEP, domain 3 VagYM4_13140 IPR042194 FHIPEP, domain 1 VagYM4_13140 IPR006302 Type III secretion protein HrcV VagYM4_13150 IPR013405 Type III secretion system regulator, LcrR VagYM4_13150 IPR022797 Type III secretion system regulator LcrR/Chaperone CesD2 VagYM4_13170 IPR036139 Virulence-associated V antigen superfamily VagYM4_13170 IPR005413 Low calcium response V antigen VagYM4_13180 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD VagYM4_13180 IPR011716 Tetratricopeptide TPR-3 VagYM4_13180 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_13180 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_13180 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup VagYM4_13200 IPR008898 YopD-like VagYM4_13220 IPR011852 TRAP transporter solute receptor, TAXI family VagYM4_13230 IPR002781 Transmembrane protein TauE-like VagYM4_13250 IPR002823 Protein of unknown function DUF112, transmembrane VagYM4_13300 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_13300 IPR012695 2-methylisocitrate lyase VagYM4_13300 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site VagYM4_13300 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_13300 IPR039556 ICL/PEPM domain VagYM4_13310 IPR036969 Citrate synthase superfamily VagYM4_13310 IPR024176 Citrate synthase, bacterial-type VagYM4_13310 IPR011278 2-methylcitrate synthase/citrate synthase type I VagYM4_13310 IPR016142 Citrate synthase-like, large alpha subdomain VagYM4_13310 IPR016143 Citrate synthase-like, small alpha subdomain VagYM4_13310 IPR019810 Citrate synthase active site VagYM4_13310 IPR002020 Citrate synthase VagYM4_13320 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent VagYM4_13320 IPR006249 Aconitase/Iron-responsive element-binding protein 2 VagYM4_13320 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain VagYM4_13320 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 VagYM4_13320 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel VagYM4_13320 IPR036008 Aconitase, iron-sulfur domain VagYM4_13320 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain VagYM4_13330 IPR012709 2-methyl-aconitate isomerase PrpF VagYM4_13330 IPR007400 PrpF protein VagYM4_13340 IPR020845 AMP-binding, conserved site VagYM4_13340 IPR000873 AMP-dependent synthetase/ligase VagYM4_13340 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_13340 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain VagYM4_13340 IPR025110 AMP-binding enzyme, C-terminal domain VagYM4_13360 IPR033116 Serine proteases, trypsin family, serine active site VagYM4_13360 IPR001254 Serine proteases, trypsin domain VagYM4_13360 IPR001314 Peptidase S1A, chymotrypsin family VagYM4_13360 IPR009003 Peptidase S1, PA clan VagYM4_13360 IPR018114 Serine proteases, trypsin family, histidine active site VagYM4_13380 IPR023214 HAD superfamily VagYM4_13380 IPR006379 HAD-superfamily hydrolase, subfamily IIB VagYM4_13380 IPR036412 HAD-like superfamily VagYM4_13380 IPR000150 Cof family VagYM4_13390 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria VagYM4_13390 IPR024924 7-carboxy-7-deazaguanine synthase-like VagYM4_13390 IPR013785 Aldolase-type TIM barrel VagYM4_13390 IPR007197 Radical SAM VagYM4_13400 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_13400 IPR018317 Queuosine biosynthesis protein QueC VagYM4_13410 IPR000160 GGDEF domain VagYM4_13410 IPR029787 Nucleotide cyclase VagYM4_13410 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region VagYM4_13430 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VagYM4_13430 IPR006664 Outer membrane protein, bacterial VagYM4_13430 IPR006665 OmpA-like domain VagYM4_13430 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_13430 IPR036737 OmpA-like domain superfamily VagYM4_13430 IPR008722 Outer membrane porin F, N-terminal VagYM4_13430 IPR028974 TSP type-3 repeat VagYM4_13460 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VagYM4_13460 IPR006664 Outer membrane protein, bacterial VagYM4_13460 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_13460 IPR006665 OmpA-like domain VagYM4_13460 IPR008722 Outer membrane porin F, N-terminal VagYM4_13460 IPR028974 TSP type-3 repeat VagYM4_13460 IPR036737 OmpA-like domain superfamily VagYM4_13490 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_13490 IPR019614 S-adenosylmethionine-dependent methyltransferase VagYM4_13490 IPR023542 rRNA large subunit methyltransferase I VagYM4_13490 IPR041532 RlmI, PUA-like domain VagYM4_13490 IPR036974 PUA domain superfamily VagYM4_13490 IPR015947 PUA-like superfamily VagYM4_13490 IPR002478 PUA domain VagYM4_13500 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_13500 IPR000727 Target SNARE coiled-coil homology domain VagYM4_13500 IPR003660 HAMP domain VagYM4_13500 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_13500 IPR033479 Double Cache domain 1 VagYM4_13510 IPR001792 Acylphosphatase-like domain VagYM4_13510 IPR020456 Acylphosphatase VagYM4_13510 IPR036046 Acylphosphatase-like domain superfamily VagYM4_13510 IPR017968 Acylphosphatase, conserved site VagYM4_13520 IPR007453 Sulphur transfer protein DsrC/TusE VagYM4_13520 IPR025526 DsrC-like domain superfamily VagYM4_13520 IPR042072 DsrC-like protein, C-terminal domain VagYM4_13540 IPR006214 Bax inhibitor 1-related VagYM4_13540 IPR006213 Bax inhibitor 1, conserved site VagYM4_13550 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type VagYM4_13550 IPR003439 ABC transporter-like VagYM4_13550 IPR017871 ABC transporter, conserved site VagYM4_13550 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_13550 IPR003593 AAA+ ATPase domain VagYM4_13560 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain VagYM4_13560 IPR035906 MetI-like superfamily VagYM4_13560 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_13570 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_13570 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain VagYM4_13570 IPR035906 MetI-like superfamily VagYM4_13580 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_13580 IPR018313 Solute-binding protein family 3, conserved site VagYM4_13580 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter VagYM4_13590 IPR014776 Tetrapyrrole methylase, subdomain 2 VagYM4_13590 IPR006366 Uroporphyrin-III C-methyltransferase VagYM4_13590 IPR014777 Tetrapyrrole methylase, subdomain 1 VagYM4_13590 IPR000878 Tetrapyrrole methylase VagYM4_13590 IPR028281 Siroheme synthase, central domain VagYM4_13590 IPR019478 Sirohaem synthase, dimerisation domain VagYM4_13590 IPR037115 Sirohaem synthase, dimerisation domain superfamily VagYM4_13590 IPR036291 NAD(P)-binding domain superfamily VagYM4_13590 IPR006367 Sirohaem synthase, N-terminal VagYM4_13590 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site VagYM4_13590 IPR035996 Tetrapyrrole methylase superfamily VagYM4_13590 IPR012409 Sirohaem synthase VagYM4_13600 IPR036183 YajQ-like superfamily VagYM4_13600 IPR035570 UPF0234, N-terminal VagYM4_13600 IPR035571 UPF0234-like, C-terminal VagYM4_13600 IPR007551 Protein of unknown function DUF520 VagYM4_13610 IPR013785 Aldolase-type TIM barrel VagYM4_13610 IPR006218 DAHP synthetase I/KDSA VagYM4_13610 IPR006219 DHAP synthase, class 1 VagYM4_13650 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain VagYM4_13650 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type VagYM4_13650 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_13650 IPR023545 rRNA small subunit methyltransferase F VagYM4_13650 IPR011023 Nop2p VagYM4_13650 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal VagYM4_13650 IPR023267 RNA (C5-cytosine) methyltransferase VagYM4_13650 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site VagYM4_13660 IPR003399 Mce/MlaD VagYM4_13670 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type VagYM4_13670 IPR007498 Intermembrane transport protein PqiA-like VagYM4_13670 IPR011031 Multihaem cytochrome VagYM4_13680 IPR003593 AAA+ ATPase domain VagYM4_13680 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_13680 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_13680 IPR039421 Type I protein exporter VagYM4_13680 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_13680 IPR011917 ABC transporter, lipid A export, MsbA VagYM4_13680 IPR003439 ABC transporter-like VagYM4_13680 IPR017871 ABC transporter, conserved site VagYM4_13690 IPR029016 GAF-like domain superfamily VagYM4_13690 IPR003018 GAF domain VagYM4_13690 IPR000614 Free Met sulfoxide reductase conserved site VagYM4_13700 IPR023529 RNA chaperone ProQ VagYM4_13700 IPR036442 ProQ/FinO domain superfamily VagYM4_13700 IPR016103 ProQ/FinO domain VagYM4_13700 IPR035236 RNA chaperone ProQ, C-terminal VagYM4_13710 IPR001478 PDZ domain VagYM4_13710 IPR036034 PDZ superfamily VagYM4_13710 IPR004447 C-terminal-processing peptidase S41A VagYM4_13710 IPR005151 Tail specific protease VagYM4_13710 IPR020992 Tail specific protease, C-terminal VagYM4_13710 IPR040573 Tail specific protease, N-terminal domain VagYM4_13710 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_13730 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily VagYM4_13730 IPR042097 Aminopeptidase N-like , N-terminal VagYM4_13730 IPR014782 Peptidase M1, membrane alanine aminopeptidase VagYM4_13730 IPR012779 Peptidase M1, alanyl aminopeptidase VagYM4_13730 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal VagYM4_13730 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily VagYM4_13730 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold VagYM4_13730 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase VagYM4_13730 IPR027268 Peptidase M4/M1, CTD superfamily VagYM4_13750 IPR007780 NAD-glutamate dehydrogenase, bacteria VagYM4_13750 IPR028971 NAD-glutamate dehydrogenase VagYM4_13750 IPR036291 NAD(P)-binding domain superfamily VagYM4_13760 IPR005720 Dihydroorotate dehydrogenase domain VagYM4_13760 IPR013785 Aldolase-type TIM barrel VagYM4_13760 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 VagYM4_13760 IPR005719 Dihydroorotate dehydrogenase, class 2 VagYM4_13760 IPR001295 Dihydroorotate dehydrogenase, conserved site VagYM4_13770 IPR009809 Cell division protein ZapC VagYM4_13780 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_13780 IPR004114 THUMP domain VagYM4_13780 IPR000241 Putative RNA methylase domain VagYM4_13780 IPR019614 S-adenosylmethionine-dependent methyltransferase VagYM4_13780 IPR017244 Ribosomal RNA large subunit methyltransferase K/L VagYM4_13780 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_13820 IPR007040 Ribosome modulation factor VagYM4_13820 IPR023200 Ribosome modulation factor domain superfamily VagYM4_13830 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ VagYM4_13830 IPR029069 HotDog domain superfamily VagYM4_13830 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA VagYM4_13840 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_13840 IPR027065 Lon protease VagYM4_13840 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_13840 IPR041699 Lon protease, AAA domain VagYM4_13840 IPR008269 Peptidase S16, Lon proteolytic domain VagYM4_13850 IPR013321 Arc-type ribbon-helix-helix VagYM4_13850 IPR035375 MatP, C-terminal ribbon-helix-helix domain VagYM4_13850 IPR009390 Macrodomain Ter protein, MatP VagYM4_13850 IPR038339 MatP, N-terminal domain superfamily VagYM4_13850 IPR035087 MatP, N-terminal VagYM4_13910 IPR008766 Replication gene A protein VagYM4_14120 IPR015387 LuxQ, periplasmic VagYM4_14120 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_14120 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_14120 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_14120 IPR005467 Histidine kinase domain VagYM4_14120 IPR035965 PAS domain superfamily VagYM4_14120 IPR011006 CheY-like superfamily VagYM4_14120 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_14120 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_14120 IPR001789 Signal transduction response regulator, receiver domain VagYM4_14120 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_14150 IPR023616 Cytochrome c oxidase-like, subunit I domain VagYM4_14150 IPR036927 Cytochrome c oxidase-like, subunit I superfamily VagYM4_14150 IPR000883 Cytochrome c oxidase subunit I VagYM4_14150 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site VagYM4_14150 IPR004677 Cytochrome c oxidase cbb3-type, subunit I VagYM4_14180 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal VagYM4_14180 IPR038414 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal domain superfamily VagYM4_14180 IPR009056 Cytochrome c-like domain VagYM4_14180 IPR036909 Cytochrome c-like domain superfamily VagYM4_14180 IPR008168 Cytochrome c, class IC VagYM4_14180 IPR004678 Cytochrome c oxidase cbb3-type, subunit III VagYM4_14200 IPR027256 P-type ATPase, subfamily IB VagYM4_14200 IPR023298 P-type ATPase, transmembrane domain superfamily VagYM4_14200 IPR023214 HAD superfamily VagYM4_14200 IPR036412 HAD-like superfamily VagYM4_14200 IPR036163 Heavy metal-associated domain superfamily VagYM4_14200 IPR006121 Heavy metal-associated domain, HMA VagYM4_14200 IPR001757 P-type ATPase VagYM4_14200 IPR008250 P-type ATPase, A domain superfamily VagYM4_14200 IPR023299 P-type ATPase, cytoplasmic domain N VagYM4_14200 IPR017969 Heavy-metal-associated, conserved site VagYM4_14200 IPR018303 P-type ATPase, phosphorylation site VagYM4_14230 IPR014710 RmlC-like jelly roll fold VagYM4_14230 IPR012318 Crp-type HTH domain VagYM4_14230 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_14230 IPR018335 Transcription regulator HTH, Crp-type, conserved site VagYM4_14230 IPR000595 Cyclic nucleotide-binding domain VagYM4_14230 IPR018490 Cyclic nucleotide-binding-like VagYM4_14230 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_14240 IPR006016 UspA VagYM4_14250 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_14250 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal VagYM4_14250 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type VagYM4_14250 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase VagYM4_14290 IPR008995 Molybdate/tungstate binding, C-terminal VagYM4_14290 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_14290 IPR003439 ABC transporter-like VagYM4_14290 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA VagYM4_14290 IPR003593 AAA+ ATPase domain VagYM4_14290 IPR013611 Transport-associated OB, type 2 VagYM4_14290 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit VagYM4_14290 IPR017871 ABC transporter, conserved site VagYM4_14300 IPR035906 MetI-like superfamily VagYM4_14300 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_14310 IPR035906 MetI-like superfamily VagYM4_14310 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_14320 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein VagYM4_14320 IPR006059 Bacterial extracellular solute-binding protein VagYM4_14330 IPR006059 Bacterial extracellular solute-binding protein VagYM4_14330 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein VagYM4_14340 IPR027546 Sirtuin, class III VagYM4_14340 IPR026591 Sirtuin, catalytic core small domain superfamily VagYM4_14340 IPR026590 Sirtuin family, catalytic core domain VagYM4_14340 IPR029035 DHS-like NAD/FAD-binding domain superfamily VagYM4_14340 IPR003000 Sirtuin family VagYM4_14360 IPR018047 Ammonium transporter, conserved site VagYM4_14360 IPR029020 Ammonium/urea transporter VagYM4_14360 IPR024041 Ammonium transporter AmtB-like domain VagYM4_14360 IPR001905 Ammonium transporter VagYM4_14410 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_14410 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_14410 IPR000813 7Fe ferredoxin VagYM4_14420 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site VagYM4_14420 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site VagYM4_14420 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_14420 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain VagYM4_14420 IPR009010 Aspartate decarboxylase-like domain superfamily VagYM4_14420 IPR006656 Molybdopterin oxidoreductase VagYM4_14420 IPR006657 Molybdopterin dinucleotide-binding domain VagYM4_14420 IPR006443 Formate dehydrogenase-N, alpha subunit VagYM4_14440 IPR036386 HscB, C-terminal domain superfamily VagYM4_14440 IPR023069 Chaperone TorD VagYM4_14440 IPR020945 DMSO/Nitrate reductase chaperone VagYM4_14440 IPR036411 TorD-like superfamily VagYM4_14480 IPR016193 Cytidine deaminase-like VagYM4_14480 IPR003786 Sulfur carrier protein FdhD VagYM4_14500 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_14500 IPR003593 AAA+ ATPase domain VagYM4_14500 IPR003439 ABC transporter-like VagYM4_14500 IPR032781 ABC-transporter extension domain VagYM4_14510 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_14510 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_14510 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_14510 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_14510 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_14510 IPR005467 Histidine kinase domain VagYM4_14510 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_14520 IPR011006 CheY-like superfamily VagYM4_14520 IPR001789 Signal transduction response regulator, receiver domain VagYM4_14520 IPR002197 DNA binding HTH domain, Fis-type VagYM4_14520 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_14520 IPR003593 AAA+ ATPase domain VagYM4_14520 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_14520 IPR009057 Homeobox-like domain superfamily VagYM4_14520 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_14520 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_14520 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_14530 IPR024370 PBP domain VagYM4_14540 IPR035906 MetI-like superfamily VagYM4_14540 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_14550 IPR013611 Transport-associated OB, type 2 VagYM4_14550 IPR008995 Molybdate/tungstate binding, C-terminal VagYM4_14550 IPR003439 ABC transporter-like VagYM4_14550 IPR017871 ABC transporter, conserved site VagYM4_14550 IPR015853 ABC transporter, ferric cation import, FbpC VagYM4_14550 IPR003593 AAA+ ATPase domain VagYM4_14550 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_14560 IPR025877 MobA-like NTP transferase VagYM4_14560 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_14560 IPR013482 Molybdenum cofactor guanylyltransferase VagYM4_14570 IPR005111 MoeA, C-terminal, domain IV VagYM4_14570 IPR005110 MoeA, N-terminal and linker domain VagYM4_14570 IPR038987 Molybdopterin biosynthesis protein MoeA-like VagYM4_14570 IPR001453 MoaB/Mog domain VagYM4_14570 IPR036425 MoaB/Mog-like domain superfamily VagYM4_14570 IPR036135 MoeA, N-terminal and linker domain superfamily VagYM4_14570 IPR008284 Molybdenum cofactor biosynthesis, conserved site VagYM4_14570 IPR036688 MoeA, C-terminal, domain IV superfamily VagYM4_14590 IPR000600 ROK family VagYM4_14590 IPR023505 N-acetyl-D-glucosamine kinase VagYM4_14650 IPR033479 Double Cache domain 1 VagYM4_14650 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_14650 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_14650 IPR003660 HAMP domain VagYM4_14660 IPR000064 Endopeptidase, NLPC/P60 domain VagYM4_14660 IPR038765 Papain-like cysteine peptidase superfamily VagYM4_14680 IPR000160 GGDEF domain VagYM4_14680 IPR029787 Nucleotide cyclase VagYM4_14680 IPR007894 MASE2 VagYM4_14690 IPR011006 CheY-like superfamily VagYM4_14690 IPR035909 Methylesterase CheB, C-terminal VagYM4_14690 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type VagYM4_14690 IPR001789 Signal transduction response regulator, receiver domain VagYM4_14690 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase VagYM4_14700 IPR011009 Protein kinase-like domain superfamily VagYM4_14700 IPR016477 Fructosamine/Ketosamine-3-kinase VagYM4_14720 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_14720 IPR001783 Lumazine-binding protein VagYM4_14720 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily VagYM4_14720 IPR026017 Lumazine-binding domain VagYM4_14730 IPR002528 Multi antimicrobial extrusion protein VagYM4_14750 IPR012310 DNA ligase, ATP-dependent, central VagYM4_14750 IPR016059 DNA ligase, ATP-dependent, conserved site VagYM4_14750 IPR029319 DNA ligase, OB-like domain VagYM4_14750 IPR012340 Nucleic acid-binding, OB-fold VagYM4_14760 IPR036513 STAS domain superfamily VagYM4_14760 IPR003658 Anti-sigma factor antagonist VagYM4_14760 IPR014237 Anti-sigma F factor antagonist VagYM4_14760 IPR002645 STAS domain VagYM4_14780 IPR003715 Polysaccharide export protein VagYM4_14780 IPR019554 Soluble ligand binding domain VagYM4_14810 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_14810 IPR003593 AAA+ ATPase domain VagYM4_14810 IPR011006 CheY-like superfamily VagYM4_14810 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_14810 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_14810 IPR002197 DNA binding HTH domain, Fis-type VagYM4_14810 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_14810 IPR001789 Signal transduction response regulator, receiver domain VagYM4_14810 IPR009057 Homeobox-like domain superfamily VagYM4_14820 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain VagYM4_14820 IPR001296 Glycosyl transferase, family 1 VagYM4_14830 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain VagYM4_14830 IPR001296 Glycosyl transferase, family 1 VagYM4_14890 IPR001296 Glycosyl transferase, family 1 VagYM4_14890 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain VagYM4_14890 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA VagYM4_14900 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_14910 IPR003362 Bacterial sugar transferase VagYM4_14910 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase VagYM4_14930 IPR000060 BCCT transporter family VagYM4_14930 IPR018093 BCCT transporter, conserved site VagYM4_14960 IPR001650 Helicase, C-terminal VagYM4_14960 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_14960 IPR007502 Helicase-associated domain VagYM4_14960 IPR011709 Domain of unknown function DUF1605 VagYM4_14960 IPR010222 RNA helicase HrpA VagYM4_14960 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_14960 IPR024590 RNA helicase HrpA, C-terminal VagYM4_14960 IPR011545 DEAD/DEAH box helicase domain VagYM4_14960 IPR003593 AAA+ ATPase domain VagYM4_14970 IPR029039 Flavoprotein-like superfamily VagYM4_14970 IPR003680 Flavodoxin-like fold VagYM4_14970 IPR023048 NADH-azoreductase, FMN-dependent VagYM4_15040 IPR000160 GGDEF domain VagYM4_15040 IPR029787 Nucleotide cyclase VagYM4_15060 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily VagYM4_15060 IPR013126 Heat shock protein 70 family VagYM4_15060 IPR018181 Heat shock protein 70, conserved site VagYM4_15060 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily VagYM4_15060 IPR012725 Chaperone DnaK VagYM4_15070 IPR013126 Heat shock protein 70 family VagYM4_15070 IPR018181 Heat shock protein 70, conserved site VagYM4_15070 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily VagYM4_15070 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily VagYM4_15070 IPR012725 Chaperone DnaK VagYM4_15110 IPR028188 Type IV pilin PilA VagYM4_15110 IPR012902 Prokaryotic N-terminal methylation site VagYM4_15120 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_15120 IPR003593 AAA+ ATPase domain VagYM4_15120 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_15120 IPR003439 ABC transporter-like VagYM4_15120 IPR017871 ABC transporter, conserved site VagYM4_15120 IPR039421 Type I protein exporter VagYM4_15120 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15130 IPR003593 AAA+ ATPase domain VagYM4_15130 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_15130 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_15130 IPR003439 ABC transporter-like VagYM4_15130 IPR017871 ABC transporter, conserved site VagYM4_15130 IPR039421 Type I protein exporter VagYM4_15130 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15150 IPR012910 TonB-dependent receptor, plug domain VagYM4_15150 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_15150 IPR039423 TonB-dependent receptor-like VagYM4_15150 IPR010916 TonB box, conserved site VagYM4_15150 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_15150 IPR010917 TonB-dependent receptor, conserved site VagYM4_15150 IPR010105 TonB-dependent siderophore receptor VagYM4_15150 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_15160 IPR010105 TonB-dependent siderophore receptor VagYM4_15160 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_15160 IPR010916 TonB box, conserved site VagYM4_15160 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_15160 IPR039423 TonB-dependent receptor-like VagYM4_15160 IPR012910 TonB-dependent receptor, plug domain VagYM4_15160 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_15170 IPR000522 ABC transporter, permease protein, BtuC-like VagYM4_15170 IPR037294 ABC transporter, BtuC-like VagYM4_15180 IPR002491 ABC transporter periplasmic binding domain VagYM4_15190 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15190 IPR003593 AAA+ ATPase domain VagYM4_15190 IPR003439 ABC transporter-like VagYM4_15190 IPR017871 ABC transporter, conserved site VagYM4_15210 IPR003607 HD/PDEase domain VagYM4_15210 IPR037522 HD-GYP domain VagYM4_15220 IPR018227 Amino acid/polyamine transporter 2 VagYM4_15220 IPR013059 Tryptophan/tyrosine transporter VagYM4_15220 IPR013061 Tryptophan/tryrosine permease, conserved site VagYM4_15230 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA VagYM4_15230 IPR018211 Alcohol dehydrogenase, iron-type, conserved site VagYM4_15230 IPR039697 Iron-type alcohol dehydrogenase-like VagYM4_15240 IPR037522 HD-GYP domain VagYM4_15240 IPR006674 HD domain VagYM4_15240 IPR003607 HD/PDEase domain VagYM4_15240 IPR006675 HDIG domain VagYM4_15260 IPR005496 Integral membrane protein TerC VagYM4_15280 IPR001989 Radical-activating enzyme, conserved site VagYM4_15280 IPR012839 Organic radical enzyme activase VagYM4_15280 IPR034457 Organic radical-activating enzymes VagYM4_15280 IPR013785 Aldolase-type TIM barrel VagYM4_15280 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_15280 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW VagYM4_15280 IPR007197 Radical SAM VagYM4_15280 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_15290 IPR016905 Glycyl radical enzyme, HI0521, predicted VagYM4_15300 IPR004778 Homoserine/Threonine efflux protein VagYM4_15300 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_15310 IPR006674 HD domain VagYM4_15310 IPR037522 HD-GYP domain VagYM4_15310 IPR021812 Protein of unknown function DUF3391 VagYM4_15310 IPR006675 HDIG domain VagYM4_15310 IPR003607 HD/PDEase domain VagYM4_15320 IPR029787 Nucleotide cyclase VagYM4_15320 IPR000160 GGDEF domain VagYM4_15320 IPR035965 PAS domain superfamily VagYM4_15320 IPR005330 MHYT domain VagYM4_15320 IPR035919 EAL domain superfamily VagYM4_15320 IPR001633 EAL domain VagYM4_15330 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_15330 IPR001789 Signal transduction response regulator, receiver domain VagYM4_15330 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15330 IPR002197 DNA binding HTH domain, Fis-type VagYM4_15330 IPR009057 Homeobox-like domain superfamily VagYM4_15330 IPR011006 CheY-like superfamily VagYM4_15330 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_15340 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_15340 IPR005467 Histidine kinase domain VagYM4_15340 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_15340 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) VagYM4_15340 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_15340 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_15340 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_15340 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_15350 IPR001898 Solute carrier family 13 VagYM4_15350 IPR031312 Sodium/sulphate symporter, conserved site VagYM4_15390 IPR029787 Nucleotide cyclase VagYM4_15390 IPR000160 GGDEF domain VagYM4_15390 IPR011006 CheY-like superfamily VagYM4_15390 IPR001789 Signal transduction response regulator, receiver domain VagYM4_15400 IPR010371 Uncharacterised protein family UPF0303 VagYM4_15400 IPR038084 GlcG-like domain superfamily VagYM4_15400 IPR005624 Haem-degrading VagYM4_15410 IPR004104 Oxidoreductase, C-terminal VagYM4_15410 IPR000683 Oxidoreductase, N-terminal VagYM4_15410 IPR036291 NAD(P)-binding domain superfamily VagYM4_15450 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme VagYM4_15450 IPR013785 Aldolase-type TIM barrel VagYM4_15450 IPR007197 Radical SAM VagYM4_15450 IPR023885 4Fe4S-binding SPASM domain VagYM4_15460 IPR042095 Sulfatase-modifying factor enzyme superfamily VagYM4_15460 IPR005532 Sulfatase-modifying factor enzyme VagYM4_15460 IPR016187 C-type lectin fold VagYM4_15490 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_15490 IPR024607 Sulfatase, conserved site VagYM4_15490 IPR000917 Sulfatase, N-terminal VagYM4_15500 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_15500 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_15500 IPR027795 CASTOR, ACT domain VagYM4_15510 IPR011051 RmlC-like cupin domain superfamily VagYM4_15510 IPR014710 RmlC-like jelly roll fold VagYM4_15510 IPR010462 Ectoine synthase VagYM4_15520 IPR012773 Ectoine biosynthetic protein VagYM4_15520 IPR005814 Aminotransferase class-III VagYM4_15520 IPR004637 2,4-diaminobutyrate 4-transaminase VagYM4_15520 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_15520 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_15520 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_15530 IPR000182 GNAT domain VagYM4_15530 IPR012772 L-2,4-diaminobutyric acid acetyltransferase VagYM4_15530 IPR016181 Acyl-CoA N-acyltransferase VagYM4_15540 IPR000060 BCCT transporter family VagYM4_15570 IPR005892 Glycine betaine transport ATP-binding subunit VagYM4_15570 IPR000644 CBS domain VagYM4_15570 IPR017871 ABC transporter, conserved site VagYM4_15570 IPR003439 ABC transporter-like VagYM4_15570 IPR003593 AAA+ ATPase domain VagYM4_15570 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15580 IPR035906 MetI-like superfamily VagYM4_15580 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_15590 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain VagYM4_15610 IPR020845 AMP-binding, conserved site VagYM4_15610 IPR000873 AMP-dependent synthetase/ligase VagYM4_15610 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_15630 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_15630 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_15630 IPR036291 NAD(P)-binding domain superfamily VagYM4_15630 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase VagYM4_15650 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_15650 IPR011006 CheY-like superfamily VagYM4_15650 IPR001789 Signal transduction response regulator, receiver domain VagYM4_15650 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_15650 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_15660 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_15660 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_15660 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_15660 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_15660 IPR005467 Histidine kinase domain VagYM4_15660 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_15660 IPR013727 Two-component sensor kinase, N-terminal VagYM4_15670 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_15670 IPR000917 Sulfatase, N-terminal VagYM4_15670 IPR012160 Lipoteichoic acid synthase-like VagYM4_15680 IPR038965 Transposase InsF-like VagYM4_15680 IPR001584 Integrase, catalytic core VagYM4_15680 IPR036397 Ribonuclease H superfamily VagYM4_15680 IPR012337 Ribonuclease H-like superfamily VagYM4_15690 IPR002514 Transposase IS3/IS911family VagYM4_15690 IPR009057 Homeobox-like domain superfamily VagYM4_15750 IPR001463 Sodium:alanine symporter VagYM4_15770 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_15780 IPR001333 Peptidase M32, carboxypeptidase Taq VagYM4_15830 IPR009061 Putative DNA-binding domain superfamily VagYM4_15830 IPR000551 MerR-type HTH domain VagYM4_15830 IPR011794 Hg(II)-responsive transcriptional regulator VagYM4_15850 IPR010914 RsgA GTPase domain VagYM4_15850 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15850 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain VagYM4_15850 IPR004881 Ribosome biogenesis GTPase RsgA VagYM4_15880 IPR015927 Peptidase S24/S26A/S26B/S26C VagYM4_15880 IPR036286 LexA/Signal peptidase-like superfamily VagYM4_15880 IPR006197 Peptidase S24, LexA-like VagYM4_15880 IPR039418 LexA-like VagYM4_15890 IPR036775 DNA polymerase, Y-family, little finger domain superfamily VagYM4_15890 IPR025188 Domain of unknown function DUF4113 VagYM4_15890 IPR001126 UmuC domain VagYM4_15890 IPR024728 DNA polymerase type-Y, HhH motif VagYM4_15890 IPR017961 DNA polymerase, Y-family, little finger domain VagYM4_15900 IPR005225 Small GTP-binding protein domain VagYM4_15900 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15900 IPR015946 K homology domain-like, alpha/beta VagYM4_15900 IPR032859 GTPase Der, C-terminal KH-domain-like VagYM4_15900 IPR031166 EngA-type guanine nucleotide-binding (G) domain VagYM4_15900 IPR016484 GTP-binding protein EngA VagYM4_15900 IPR006073 GTP binding domain VagYM4_15910 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15910 IPR006073 GTP binding domain VagYM4_15930 IPR003593 AAA+ ATPase domain VagYM4_15930 IPR016484 GTP-binding protein EngA VagYM4_15930 IPR032859 GTPase Der, C-terminal KH-domain-like VagYM4_15930 IPR015946 K homology domain-like, alpha/beta VagYM4_15930 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_15930 IPR005225 Small GTP-binding protein domain VagYM4_15930 IPR031166 EngA-type guanine nucleotide-binding (G) domain VagYM4_15930 IPR006073 GTP binding domain VagYM4_16000 IPR003753 Exonuclease VII, large subunit VagYM4_16000 IPR020579 Exonuclease VII, large subunit, C-terminal VagYM4_16000 IPR025824 OB-fold nucleic acid binding domain VagYM4_16050 IPR017882 Zinc import ATP-binding protein ZnuC VagYM4_16050 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_16050 IPR003439 ABC transporter-like VagYM4_16050 IPR003593 AAA+ ATPase domain VagYM4_16100 IPR038718 SNF2-like, N-terminal domain superfamily VagYM4_16100 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_16100 IPR001650 Helicase, C-terminal VagYM4_16100 IPR022138 Helicase SWF/SNF-related VagYM4_16100 IPR000330 SNF2-related, N-terminal domain VagYM4_16100 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_16120 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_16120 IPR018094 Thymidylate kinase VagYM4_16120 IPR039430 Thymidylate kinase-like domain VagYM4_16120 IPR018095 Thymidylate kinase, conserved site VagYM4_16190 IPR025827 Recombinase zinc beta ribbon domain VagYM4_16190 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily VagYM4_16190 IPR006119 Resolvase, N-terminal catalytic domain VagYM4_16190 IPR011109 DNA-binding recombinase domain VagYM4_16190 IPR038109 DNA-binding recombinase domain superfamily VagYM4_16200 IPR001333 Peptidase M32, carboxypeptidase Taq VagYM4_16210 IPR004960 Bacterial lipid A biosynthesis acyltransferase VagYM4_16210 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase VagYM4_16230 IPR002293 Amino acid/polyamine transporter I VagYM4_16240 IPR000390 Small multidrug resistance protein family VagYM4_16260 IPR033752 MetA family VagYM4_16260 IPR005697 Homoserine O-succinyltransferase MetA VagYM4_16260 IPR029062 Class I glutamine amidotransferase-like VagYM4_16270 IPR013360 Pilus biogenesis/stability type IV, PilW VagYM4_16270 IPR019734 Tetratricopeptide repeat VagYM4_16270 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_16270 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_16290 IPR001633 EAL domain VagYM4_16290 IPR005330 MHYT domain VagYM4_16290 IPR029787 Nucleotide cyclase VagYM4_16290 IPR035919 EAL domain superfamily VagYM4_16290 IPR000160 GGDEF domain VagYM4_16300 IPR001789 Signal transduction response regulator, receiver domain VagYM4_16300 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_16300 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_16300 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_16300 IPR036641 HPT domain superfamily VagYM4_16300 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_16300 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_16300 IPR003660 HAMP domain VagYM4_16300 IPR019247 Histidine kinase BarA, N-terminal VagYM4_16300 IPR011006 CheY-like superfamily VagYM4_16300 IPR005467 Histidine kinase domain VagYM4_16300 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_16330 IPR018357 Hexapeptide transferase, conserved site VagYM4_16330 IPR001451 Hexapeptide repeat VagYM4_16330 IPR039369 Galactoside O-acetyltransferase LacA-like VagYM4_16330 IPR011004 Trimeric LpxA-like superfamily VagYM4_16330 IPR024688 Maltose/galactoside acetyltransferase VagYM4_16360 IPR007351 Uncharacterised protein YjbR VagYM4_16360 IPR038056 YjbR-like superfamily VagYM4_16370 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_16370 IPR023187 Transcriptional regulator MarR-type, conserved site VagYM4_16370 IPR000835 MarR-type HTH domain VagYM4_16370 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_16390 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain VagYM4_16390 IPR001633 EAL domain VagYM4_16390 IPR035919 EAL domain superfamily VagYM4_16440 IPR036249 Thioredoxin-like superfamily VagYM4_16440 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VagYM4_16440 IPR004045 Glutathione S-transferase, N-terminal VagYM4_16440 IPR004046 Glutathione S-transferase, C-terminal VagYM4_16440 IPR034330 Glutathione S-transferases, class Zeta , C-terminal VagYM4_16440 IPR034333 Glutathione S-transferases, class Zeta , N-terminal VagYM4_16440 IPR010987 Glutathione S-transferase, C-terminal-like VagYM4_16440 IPR005955 Glutathione S-transferases, class Zeta VagYM4_16440 IPR040079 Glutathione Transferase family VagYM4_16460 IPR011051 RmlC-like cupin domain superfamily VagYM4_16460 IPR005708 Homogentisate 1,2-dioxygenase VagYM4_16460 IPR014710 RmlC-like jelly roll fold VagYM4_16470 IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal VagYM4_16470 IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal VagYM4_16470 IPR005956 4-hydroxyphenylpyruvate dioxygenase VagYM4_16470 IPR037523 Vicinal oxygen chelate (VOC) domain VagYM4_16470 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VagYM4_16470 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_16480 IPR036264 Bacterial exopeptidase dimerisation domain VagYM4_16480 IPR008007 Peptidase M42 VagYM4_16480 IPR011650 Peptidase M20, dimerisation domain VagYM4_16480 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site VagYM4_16480 IPR002933 Peptidase M20 VagYM4_16480 IPR010162 Peptidase M20B, peptidase T-like VagYM4_16490 IPR030678 Peptide/nickel binding protein, MppA-type VagYM4_16490 IPR023765 Solute-binding protein family 5, conserved site VagYM4_16490 IPR039424 Solute-binding protein family 5 VagYM4_16490 IPR000914 Solute-binding protein family 5 domain VagYM4_16500 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_16500 IPR035906 MetI-like superfamily VagYM4_16510 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VagYM4_16510 IPR035906 MetI-like superfamily VagYM4_16510 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_16520 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_16520 IPR003439 ABC transporter-like VagYM4_16520 IPR003593 AAA+ ATPase domain VagYM4_16520 IPR017871 ABC transporter, conserved site VagYM4_16520 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_16530 IPR003439 ABC transporter-like VagYM4_16530 IPR017871 ABC transporter, conserved site VagYM4_16530 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_16530 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_16530 IPR003593 AAA+ ATPase domain VagYM4_16550 IPR000601 PKD domain VagYM4_16550 IPR013783 Immunoglobulin-like fold VagYM4_16550 IPR035986 PKD domain superfamily VagYM4_16550 IPR022409 PKD/Chitinase domain VagYM4_16550 IPR013661 Peptidase M9, collagenase, N-terminal domain VagYM4_16550 IPR002169 Peptidase M9A/M9B, collagenase, bacterial VagYM4_16580 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_16580 IPR035906 MetI-like superfamily VagYM4_16590 IPR035906 MetI-like superfamily VagYM4_16590 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_16600 IPR008995 Molybdate/tungstate binding, C-terminal VagYM4_16600 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_16600 IPR017871 ABC transporter, conserved site VagYM4_16600 IPR003439 ABC transporter-like VagYM4_16600 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA VagYM4_16600 IPR003593 AAA+ ATPase domain VagYM4_16600 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit VagYM4_16600 IPR013611 Transport-associated OB, type 2 VagYM4_16610 IPR013785 Aldolase-type TIM barrel VagYM4_16610 IPR020624 Schiff base-forming aldolase, conserved site VagYM4_16610 IPR020625 Schiff base-forming aldolase, active site VagYM4_16610 IPR002220 DapA-like VagYM4_16610 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA VagYM4_16620 IPR023401 Ornithine cyclodeaminase, N-terminal VagYM4_16620 IPR003462 Ornithine cyclodeaminase/mu-crystallin VagYM4_16620 IPR036291 NAD(P)-binding domain superfamily VagYM4_16640 IPR006076 FAD dependent oxidoreductase VagYM4_16640 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_16640 IPR008471 MnmC-like methyltransferase VagYM4_16640 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC VagYM4_16640 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal VagYM4_16650 IPR008794 Proline racemase family VagYM4_16660 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_16660 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_16660 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_16660 IPR015590 Aldehyde dehydrogenase domain VagYM4_16670 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_16670 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_16670 IPR000524 Transcription regulator HTH, GntR VagYM4_16670 IPR008920 Transcription regulator FadR/GntR, C-terminal VagYM4_16710 IPR010286 METTL16/RlmF family VagYM4_16710 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_16710 IPR016909 Ribosomal RNA large subunit methyltransferase F VagYM4_16720 IPR002725 Protein of unknown function DUF45 VagYM4_16740 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_16740 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_16740 IPR000847 Transcription regulator HTH, LysR VagYM4_16740 IPR005119 LysR, substrate-binding VagYM4_16780 IPR003439 ABC transporter-like VagYM4_16780 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_16780 IPR003593 AAA+ ATPase domain VagYM4_16780 IPR023693 ABC transporter, vitamin B12, BtuD VagYM4_16790 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC VagYM4_16790 IPR037294 ABC transporter, BtuC-like VagYM4_16790 IPR000522 ABC transporter, permease protein, BtuC-like VagYM4_16800 IPR007036 Succinylglutamate desuccinylase/aspartoacylase VagYM4_16800 IPR016681 Succinylglutamate desuccinylase VagYM4_16830 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_16830 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase VagYM4_16840 IPR003805 Adenosylcobinamide-GDP ribazoletransferase VagYM4_16850 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like VagYM4_16850 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily VagYM4_16850 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal VagYM4_16850 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic VagYM4_16860 IPR016040 NAD(P)-binding domain VagYM4_16860 IPR000534 Semialdehyde dehydrogenase, NAD-binding VagYM4_16860 IPR036291 NAD(P)-binding domain superfamily VagYM4_16880 IPR038649 Exonuclease I, SH3-like domain superfamily VagYM4_16880 IPR013620 Exodeoxyribonuclease I, C-terminal VagYM4_16880 IPR034747 Exonuclease I, SH3-like domain VagYM4_16880 IPR034748 Exonuclease I, C-terminal alpha-helical domain VagYM4_16880 IPR023607 Exodeoxyribonuclease I VagYM4_16880 IPR036397 Ribonuclease H superfamily VagYM4_16880 IPR012337 Ribonuclease H-like superfamily VagYM4_16880 IPR013520 Exonuclease, RNase T/DNA polymerase III VagYM4_16890 IPR022957 Uncharacterised protein family UPF0299 VagYM4_16890 IPR005538 LrgA/CidA family VagYM4_16900 IPR005261 Conserved hypothetical protein CHP00659 VagYM4_16900 IPR007300 CidB/LrgB family VagYM4_16910 IPR020797 Cytidine deaminase, bacteria VagYM4_16910 IPR016193 Cytidine deaminase-like VagYM4_16910 IPR006263 Cytidine deaminase, homodimeric VagYM4_16910 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain VagYM4_16910 IPR016192 APOBEC/CMP deaminase, zinc-binding VagYM4_16910 IPR002125 Cytidine and deoxycytidylate deaminase domain VagYM4_16920 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type VagYM4_16920 IPR011761 ATP-grasp fold VagYM4_16920 IPR011054 Rudiment single hybrid motif VagYM4_16920 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase VagYM4_16920 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_16920 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_16930 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification VagYM4_16930 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_16930 IPR025835 Thiopurine S-methyltransferase VagYM4_16930 IPR008854 TPMT family VagYM4_16950 IPR005684 Integration host factor, alpha subunit VagYM4_16950 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily VagYM4_16950 IPR020816 Histone-like DNA-binding protein, conserved site VagYM4_16950 IPR000119 Histone-like DNA-binding protein VagYM4_16970 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain VagYM4_16970 IPR005146 B3/B4 tRNA-binding domain VagYM4_16970 IPR009061 Putative DNA-binding domain superfamily VagYM4_16970 IPR005121 Ferrodoxin-fold anticodon-binding domain VagYM4_16970 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain VagYM4_16970 IPR002547 tRNA-binding domain VagYM4_16970 IPR012340 Nucleic acid-binding, OB-fold VagYM4_16970 IPR005147 tRNA synthetase, B5-domain VagYM4_16970 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit VagYM4_16970 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily VagYM4_16970 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 VagYM4_16980 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_16980 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm VagYM4_16980 IPR002319 Phenylalanyl-tRNA synthetase VagYM4_16980 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial VagYM4_16980 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal VagYM4_16980 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit VagYM4_17040 IPR002765 Uncharacterised protein family UPF0145 VagYM4_17040 IPR035439 UPF0145 domain superfamily VagYM4_17050 IPR035566 Ribosomal protein L20, C-terminal VagYM4_17050 IPR005813 Ribosomal protein L20 VagYM4_17060 IPR037229 Ribosomal protein L35 superfamily VagYM4_17060 IPR001706 Ribosomal protein L35, non-mitochondrial VagYM4_17060 IPR018265 Ribosomal protein L35, conserved site VagYM4_17060 IPR021137 Ribosomal protein L35 VagYM4_17070 IPR019815 Translation initiation factor 3, C-terminal VagYM4_17070 IPR019814 Translation initiation factor 3, N-terminal VagYM4_17070 IPR001288 Translation initiation factor 3 VagYM4_17070 IPR019813 Translation initiation factor 3, conserved site VagYM4_17070 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily VagYM4_17070 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily VagYM4_17080 IPR036621 Anticodon-binding domain superfamily VagYM4_17080 IPR012675 Beta-grasp domain superfamily VagYM4_17080 IPR004095 TGS VagYM4_17080 IPR012676 TGS-like VagYM4_17080 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily VagYM4_17080 IPR002320 Threonine-tRNA ligase, class IIa VagYM4_17080 IPR012947 Threonyl/alanyl tRNA synthetase, SAD VagYM4_17080 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) VagYM4_17080 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_17080 IPR004154 Anticodon-binding VagYM4_17080 IPR033728 Threonine-tRNA ligase catalytic core domain VagYM4_17110 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_17110 IPR010248 Histidine utilization repressor VagYM4_17110 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VagYM4_17110 IPR000524 Transcription regulator HTH, GntR VagYM4_17110 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_17110 IPR011663 UbiC transcription regulator-associated VagYM4_17120 IPR032466 Metal-dependent hydrolase VagYM4_17120 IPR011059 Metal-dependent hydrolase, composite domain superfamily VagYM4_17120 IPR005920 Imidazolonepropionase VagYM4_17120 IPR006680 Amidohydrolase-related VagYM4_17130 IPR006035 Ureohydrolase VagYM4_17130 IPR005923 Formiminoglutamase VagYM4_17130 IPR020855 Ureohydrolase, manganese-binding site VagYM4_17130 IPR023696 Ureohydrolase domain superfamily VagYM4_17140 IPR023637 Urocanase VagYM4_17140 IPR035401 Urocanase, C-terminal domain VagYM4_17140 IPR038364 Urocanase, central domain superfamily VagYM4_17140 IPR023636 Urocanase conserved site VagYM4_17140 IPR035400 Urocanase, N-terminal domain VagYM4_17140 IPR035085 Urocanase, Rossmann-like domain VagYM4_17140 IPR036190 Urocanase superfamily VagYM4_17150 IPR008948 L-Aspartase-like VagYM4_17150 IPR005921 Histidine ammonia-lyase VagYM4_17150 IPR001106 Aromatic amino acid lyase VagYM4_17150 IPR024083 Fumarase/histidase, N-terminal VagYM4_17150 IPR022313 Phenylalanine/histidine ammonia-lyases, active site VagYM4_17170 IPR007318 Phospholipid methyltransferase VagYM4_17180 IPR004113 FAD-linked oxidase, C-terminal VagYM4_17180 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_17180 IPR009051 Alpha-helical ferredoxin VagYM4_17180 IPR016164 FAD-linked oxidase-like, C-terminal VagYM4_17180 IPR016166 FAD-binding domain, PCMH-type VagYM4_17180 IPR006094 FAD linked oxidase, N-terminal VagYM4_17180 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_17180 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_17210 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_17210 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VagYM4_17210 IPR006664 Outer membrane protein, bacterial VagYM4_17210 IPR006665 OmpA-like domain VagYM4_17210 IPR028974 TSP type-3 repeat VagYM4_17210 IPR008722 Outer membrane porin F, N-terminal VagYM4_17210 IPR036737 OmpA-like domain superfamily VagYM4_17250 IPR028923 SAICAR synthetase/ADE2, N-terminal VagYM4_17250 IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type VagYM4_17250 IPR018236 SAICAR synthetase, conserved site VagYM4_17260 IPR018946 Alkaline phosphatase D-related VagYM4_17260 IPR038607 PhoD-like superfamily VagYM4_17260 IPR032093 Phospholipase D, N-terminal VagYM4_17260 IPR008963 Purple acid phosphatase-like, N-terminal VagYM4_17260 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_17280 IPR001650 Helicase, C-terminal VagYM4_17280 IPR011545 DEAD/DEAH box helicase domain VagYM4_17280 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal VagYM4_17280 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_17280 IPR010225 ATP-dependent helicase HrpB VagYM4_17280 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_17280 IPR007502 Helicase-associated domain VagYM4_17290 IPR036291 NAD(P)-binding domain superfamily VagYM4_17290 IPR012302 Malic enzyme, NAD-binding VagYM4_17290 IPR001891 Malic oxidoreductase VagYM4_17290 IPR037062 Malic enzyme, N-terminal domain superfamily VagYM4_17290 IPR015884 Malic enzyme, conserved site VagYM4_17290 IPR012301 Malic enzyme, N-terminal domain VagYM4_17290 IPR023667 NAD-dependent malic enzyme, proteobacteria VagYM4_17300 IPR023604 Uncharacterised protein family SanA VagYM4_17300 IPR003848 Domain of unknown function DUF218 VagYM4_17310 IPR001898 Solute carrier family 13 VagYM4_17310 IPR031312 Sodium/sulphate symporter, conserved site VagYM4_17320 IPR001898 Solute carrier family 13 VagYM4_17320 IPR031312 Sodium/sulphate symporter, conserved site VagYM4_17340 IPR000160 GGDEF domain VagYM4_17340 IPR029787 Nucleotide cyclase VagYM4_17340 IPR001789 Signal transduction response regulator, receiver domain VagYM4_17340 IPR011006 CheY-like superfamily VagYM4_17360 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_17360 IPR010970 Cysteine desulfurase, SufS VagYM4_17360 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_17360 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_17360 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VagYM4_17360 IPR000192 Aminotransferase class V domain VagYM4_17380 IPR023753 FAD/NAD(P)-binding domain VagYM4_17380 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site VagYM4_17380 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_17380 IPR005982 Thioredoxin reductase VagYM4_17390 IPR003593 AAA+ ATPase domain VagYM4_17390 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_17390 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD VagYM4_17390 IPR039421 Type I protein exporter VagYM4_17390 IPR003439 ABC transporter-like VagYM4_17390 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_17390 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_17390 IPR017871 ABC transporter, conserved site VagYM4_17400 IPR003439 ABC transporter-like VagYM4_17400 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC VagYM4_17400 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_17400 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_17400 IPR017871 ABC transporter, conserved site VagYM4_17400 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_17400 IPR003593 AAA+ ATPase domain VagYM4_17420 IPR039001 Peptidoglycan-associated lipoprotein VagYM4_17420 IPR036737 OmpA-like domain superfamily VagYM4_17420 IPR006665 OmpA-like domain VagYM4_17420 IPR006664 Outer membrane protein, bacterial VagYM4_17420 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal VagYM4_17420 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_17450 IPR000015 Outer membrane usher protein VagYM4_17450 IPR042186 Outer membrane usher protein FimD, plug domain VagYM4_17450 IPR037224 PapC, N-terminal domain superfamily VagYM4_17450 IPR018030 Fimbrial membrane usher, conserved site VagYM4_17450 IPR025885 PapC, N-terminal domain VagYM4_17450 IPR025949 PapC-like, C-terminal domain VagYM4_17460 IPR008962 PapD-like superfamily VagYM4_17460 IPR016148 Pili assembly chaperone, C-terminal VagYM4_17460 IPR001829 Pili assembly chaperone, bacterial VagYM4_17460 IPR036316 Pili assembly chaperone, C-terminal domain superfamily VagYM4_17460 IPR013783 Immunoglobulin-like fold VagYM4_17460 IPR016147 Pili assembly chaperone, N-terminal VagYM4_17460 IPR018046 Pili assembly chaperone, conserved site VagYM4_17470 IPR000259 Fimbrial-type adhesion domain VagYM4_17470 IPR008966 Adhesion domain superfamily VagYM4_17470 IPR036937 Fimbrial-type adhesion domain superfamily VagYM4_17480 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VagYM4_17480 IPR022278 Phosphoserine aminotransferase VagYM4_17480 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_17480 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_17480 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_17480 IPR000192 Aminotransferase class V domain VagYM4_17500 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_17500 IPR005467 Histidine kinase domain VagYM4_17500 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_17500 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_17500 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_17500 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_17500 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_17540 IPR007077 TfoX, C-terminal VagYM4_17540 IPR007076 TfoX, N-terminal VagYM4_17540 IPR026256 Transcriptional regulator, TfoX/Sxy-type VagYM4_17560 IPR005642 Lysine exporter LysO VagYM4_17580 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_17580 IPR002129 Pyridoxal phosphate-dependent decarboxylase VagYM4_17580 IPR022517 Aspartate 1-decarboxylase, pyridoxal-dependent VagYM4_17580 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_17590 IPR035472 RpiR-like, SIS domain VagYM4_17590 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_17590 IPR000281 Helix-turn-helix protein RpiR VagYM4_17590 IPR009057 Homeobox-like domain superfamily VagYM4_17590 IPR001347 Sugar isomerase (SIS) VagYM4_17600 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA VagYM4_17600 IPR039697 Iron-type alcohol dehydrogenase-like VagYM4_17600 IPR018211 Alcohol dehydrogenase, iron-type, conserved site VagYM4_17610 IPR036249 Thioredoxin-like superfamily VagYM4_17610 IPR011902 Glutaredoxin, GrxA VagYM4_17610 IPR002109 Glutaredoxin VagYM4_17610 IPR014025 Glutaredoxin subgroup VagYM4_17620 IPR023017 Transport protein YbjL, putative VagYM4_17620 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_17620 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_17620 IPR006512 YidE/YbjL duplication VagYM4_17630 IPR024906 Enoyl reductase FAD binding domain VagYM4_17630 IPR010758 Trans-2-enoyl-CoA reductase VagYM4_17630 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative VagYM4_17640 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type VagYM4_17640 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal VagYM4_17640 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal VagYM4_17640 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily VagYM4_17640 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain VagYM4_17640 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily VagYM4_17640 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal VagYM4_17650 IPR032551 HTH-type transcriptional repressor, C-terminal VagYM4_17650 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VagYM4_17650 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_17650 IPR009057 Homeobox-like domain superfamily VagYM4_17650 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_17660 IPR004670 Na+/H+ antiporter NhaA VagYM4_17660 IPR023171 Na/H antiporter domain superfamily VagYM4_17690 IPR003593 AAA+ ATPase domain VagYM4_17690 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_17690 IPR003439 ABC transporter-like VagYM4_17690 IPR017871 ABC transporter, conserved site VagYM4_17700 IPR002528 Multi antimicrobial extrusion protein VagYM4_17710 IPR021295 Protein of unknown function DUF2867 VagYM4_17710 IPR036291 NAD(P)-binding domain superfamily VagYM4_17710 IPR016040 NAD(P)-binding domain VagYM4_17720 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK VagYM4_17720 IPR005126 NapC/NirT cytochrome c, N-terminal VagYM4_17720 IPR036280 Multiheme cytochrome superfamily VagYM4_17720 IPR011031 Multihaem cytochrome VagYM4_17720 IPR038266 NapC/NirT cytochrome c superfamily VagYM4_17750 IPR020015 Decaheme cytochrome, c-type, DmsE VagYM4_17750 IPR011031 Multihaem cytochrome VagYM4_17750 IPR010177 Doubled CXXCH motif VagYM4_17750 IPR036280 Multiheme cytochrome superfamily VagYM4_17780 IPR011701 Major facilitator superfamily VagYM4_17780 IPR004734 Multidrug resistance protein VagYM4_17780 IPR036259 MFS transporter superfamily VagYM4_17780 IPR004812 Drug resistance transporter Bcr/CmlA subfamily VagYM4_17780 IPR020846 Major facilitator superfamily domain VagYM4_17790 IPR002942 RNA-binding S4 domain VagYM4_17790 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site VagYM4_17790 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F VagYM4_17790 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_17790 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_17790 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain VagYM4_17790 IPR036986 RNA-binding S4 domain superfamily VagYM4_17800 IPR006935 Helicase/UvrB, N-terminal VagYM4_17800 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_17800 IPR001650 Helicase, C-terminal VagYM4_17800 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_17800 IPR011332 Zinc-binding ribosomal protein VagYM4_17820 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_17820 IPR001789 Signal transduction response regulator, receiver domain VagYM4_17820 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_17820 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_17820 IPR011006 CheY-like superfamily VagYM4_17830 IPR003660 HAMP domain VagYM4_17830 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_17830 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_17830 IPR005467 Histidine kinase domain VagYM4_17830 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_17830 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_17830 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_17840 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily VagYM4_17840 IPR029751 Ribosomal protein L25 VagYM4_17840 IPR020055 Ribosomal protein L25, short-form VagYM4_17840 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal VagYM4_17850 IPR012772 L-2,4-diaminobutyric acid acetyltransferase VagYM4_17850 IPR000182 GNAT domain VagYM4_17850 IPR016181 Acyl-CoA N-acyltransferase VagYM4_17860 IPR008334 5'-Nucleotidase, C-terminal VagYM4_17860 IPR036907 5'-Nucleotidase, C-terminal domain superfamily VagYM4_17860 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type VagYM4_17860 IPR006146 5'-Nucleotidase, conserved site VagYM4_17860 IPR029052 Metallo-dependent phosphatase-like VagYM4_17860 IPR006179 5'-Nucleotidase/apyrase VagYM4_17890 IPR006059 Bacterial extracellular solute-binding protein VagYM4_17890 IPR027020 Protein ynjB VagYM4_17900 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_17900 IPR035906 MetI-like superfamily VagYM4_17910 IPR003439 ABC transporter-like VagYM4_17910 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_17910 IPR003593 AAA+ ATPase domain VagYM4_17910 IPR017871 ABC transporter, conserved site VagYM4_17920 IPR000462 CDP-alcohol phosphatidyltransferase VagYM4_17940 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_17940 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_17940 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_17940 IPR003593 AAA+ ATPase domain VagYM4_17940 IPR003018 GAF domain VagYM4_17940 IPR029016 GAF-like domain superfamily VagYM4_17940 IPR009057 Homeobox-like domain superfamily VagYM4_17940 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_17940 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_17950 IPR016099 Prismane-like, alpha/beta-sandwich VagYM4_17950 IPR016100 Prismane, alpha-bundle VagYM4_17950 IPR010048 Hydroxylamine reductase VagYM4_17950 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase VagYM4_17950 IPR011254 Prismane-like superfamily VagYM4_17960 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_17960 IPR000951 Phthalate dioxygenase reductase VagYM4_17960 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_17960 IPR001433 Oxidoreductase FAD/NAD(P)-binding VagYM4_17960 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VagYM4_17960 IPR017927 FAD-binding domain, ferredoxin reductase-type VagYM4_17960 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain VagYM4_17960 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_17960 IPR012675 Beta-grasp domain superfamily VagYM4_17980 IPR006508 Pseudouridine synthase, RluA-like VagYM4_17980 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_17980 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_17980 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site VagYM4_17990 IPR037272 Sodium:neurotransmitter symporter superfamily VagYM4_17990 IPR000175 Sodium:neurotransmitter symporter VagYM4_18000 IPR000175 Sodium:neurotransmitter symporter VagYM4_18000 IPR037272 Sodium:neurotransmitter symporter superfamily VagYM4_18010 IPR022924 Cardiolipin synthase VagYM4_18010 IPR027379 Cardiolipin synthase N-terminal VagYM4_18010 IPR030840 Cardiolipin synthase A VagYM4_18010 IPR001736 Phospholipase D/Transphosphatidylase VagYM4_18010 IPR025202 Phospholipase D-like domain VagYM4_18020 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme VagYM4_18020 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_18020 IPR006233 Cystathionine beta-lyase, bacterial VagYM4_18020 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_18020 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_18030 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_18030 IPR029058 Alpha/Beta hydrolase fold VagYM4_18040 IPR004961 Lipase chaperone VagYM4_18050 IPR011257 DNA glycosylase VagYM4_18050 IPR004597 DNA-3-methyladenine glycosylase I VagYM4_18050 IPR005019 Methyladenine glycosylase VagYM4_18060 IPR001036 Acriflavin resistance protein VagYM4_18060 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_18070 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VagYM4_18070 IPR022824 Multidrug resistance protein MdtA VagYM4_18070 IPR006143 RND efflux pump, membrane fusion protein VagYM4_18090 IPR014320 Phage shock protein, PspC VagYM4_18090 IPR007168 Phage shock protein, PspC, N-terminal VagYM4_18100 IPR009554 Phage shock protein B VagYM4_18110 IPR014319 Phage shock protein, PspA VagYM4_18110 IPR007157 PspA/IM30 VagYM4_18120 IPR009057 Homeobox-like domain superfamily VagYM4_18120 IPR014317 Transcription activator PspF VagYM4_18120 IPR002197 DNA binding HTH domain, Fis-type VagYM4_18120 IPR003593 AAA+ ATPase domain VagYM4_18120 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18120 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_18120 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_18120 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_18130 IPR000914 Solute-binding protein family 5 domain VagYM4_18130 IPR023765 Solute-binding protein family 5, conserved site VagYM4_18130 IPR039424 Solute-binding protein family 5 VagYM4_18130 IPR030678 Peptide/nickel binding protein, MppA-type VagYM4_18140 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_18140 IPR035906 MetI-like superfamily VagYM4_18150 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VagYM4_18150 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_18150 IPR035906 MetI-like superfamily VagYM4_18160 IPR003593 AAA+ ATPase domain VagYM4_18160 IPR003439 ABC transporter-like VagYM4_18160 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_18160 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18170 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18170 IPR003593 AAA+ ATPase domain VagYM4_18170 IPR003439 ABC transporter-like VagYM4_18170 IPR017871 ABC transporter, conserved site VagYM4_18190 IPR001667 DDH domain VagYM4_18190 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable VagYM4_18190 IPR038222 DHHA2 domain superfamily VagYM4_18190 IPR038763 DHH phosphoesterase superfamily VagYM4_18190 IPR004097 DHHA2 domain VagYM4_18210 IPR013785 Aldolase-type TIM barrel VagYM4_18210 IPR038417 Alpha-galactosidase, N-terminal domain superfamily VagYM4_18210 IPR000111 Glycoside hydrolase family 27/36, conserved site VagYM4_18210 IPR002252 Glycoside hydrolase family 36 VagYM4_18210 IPR031705 Glycosyl hydrolase family 36, C-terminal VagYM4_18210 IPR017853 Glycoside hydrolase superfamily VagYM4_18210 IPR031704 Glycosyl hydrolase family 36, N-terminal VagYM4_18220 IPR041954 Trimethylamine-N-oxide reductase-like, molybdopterin-binding domain VagYM4_18220 IPR041460 Molybdopterin oxidoreductase, N-terminal VagYM4_18220 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VagYM4_18220 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_18220 IPR009010 Aspartate decarboxylase-like domain superfamily VagYM4_18220 IPR011887 Trimethylamine-N-oxide reductase TorA VagYM4_18220 IPR006657 Molybdopterin dinucleotide-binding domain VagYM4_18220 IPR006656 Molybdopterin oxidoreductase VagYM4_18220 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site VagYM4_18230 IPR011031 Multihaem cytochrome VagYM4_18230 IPR024717 Denitrification system component NapC/NirT/NrfH VagYM4_18230 IPR036280 Multiheme cytochrome superfamily VagYM4_18230 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT VagYM4_18230 IPR038266 NapC/NirT cytochrome c superfamily VagYM4_18230 IPR005126 NapC/NirT cytochrome c, N-terminal VagYM4_18240 IPR004448 Nitrate reductas, NapE, periplasmic VagYM4_18240 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE VagYM4_18250 IPR005226 UPF0014 family VagYM4_18270 IPR023999 Formate transporter FocA, putative VagYM4_18270 IPR024002 Formate/nitrite transporter, conserved site VagYM4_18270 IPR023271 Aquaporin-like VagYM4_18270 IPR000292 Formate/nitrite transporter VagYM4_18320 IPR003848 Domain of unknown function DUF218 VagYM4_18320 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_18330 IPR020633 Thymidine kinase, conserved site VagYM4_18330 IPR001267 Thymidine kinase VagYM4_18330 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18340 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding VagYM4_18340 IPR032678 tRNA synthetases class I, catalytic domain VagYM4_18340 IPR015803 Cysteine-tRNA ligase VagYM4_18340 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR VagYM4_18340 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase VagYM4_18340 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_18350 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site VagYM4_18350 IPR029000 Cyclophilin-like domain superfamily VagYM4_18350 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase VagYM4_18350 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain VagYM4_18360 IPR029052 Metallo-dependent phosphatase-like VagYM4_18360 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type VagYM4_18360 IPR010138 UDP-2,3-diacylglucosamine hydrolase VagYM4_18370 IPR013976 Metal-dependent hydrolase HDOD VagYM4_18370 IPR001633 EAL domain VagYM4_18370 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing VagYM4_18370 IPR035919 EAL domain superfamily VagYM4_18380 IPR023006 Uncharacterised protein family UPF0225 VagYM4_18380 IPR004027 SEC-C motif VagYM4_18380 IPR032710 NTF2-like domain superfamily VagYM4_18400 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal VagYM4_18400 IPR038071 UROD/MetE-like superfamily VagYM4_18400 IPR006276 Cobalamin-independent methionine synthase VagYM4_18400 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal VagYM4_18440 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18440 IPR025857 MacB-like periplasmic core domain VagYM4_18440 IPR003439 ABC transporter-like VagYM4_18440 IPR017911 ABC transporter, macrolide export, ATP-binding domain VagYM4_18440 IPR017871 ABC transporter, conserved site VagYM4_18440 IPR003593 AAA+ ATPase domain VagYM4_18440 IPR003838 ABC transporter permease protein domain VagYM4_18450 IPR017871 ABC transporter, conserved site VagYM4_18450 IPR017911 ABC transporter, macrolide export, ATP-binding domain VagYM4_18450 IPR003439 ABC transporter-like VagYM4_18450 IPR003838 ABC transporter permease protein domain VagYM4_18450 IPR025857 MacB-like periplasmic core domain VagYM4_18450 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18450 IPR003593 AAA+ ATPase domain VagYM4_18460 IPR003439 ABC transporter-like VagYM4_18460 IPR003838 ABC transporter permease protein domain VagYM4_18460 IPR003593 AAA+ ATPase domain VagYM4_18460 IPR017871 ABC transporter, conserved site VagYM4_18460 IPR025857 MacB-like periplasmic core domain VagYM4_18460 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18460 IPR017911 ABC transporter, macrolide export, ATP-binding domain VagYM4_18480 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_18480 IPR006143 RND efflux pump, membrane fusion protein VagYM4_18480 IPR030190 Macrolide export protein MacA VagYM4_18510 IPR010280 (Uracil-5)-methyltransferase family VagYM4_18510 IPR002792 TRAM domain VagYM4_18510 IPR012340 Nucleic acid-binding, OB-fold VagYM4_18510 IPR030390 RNA methyltransferase TrmA, active site VagYM4_18510 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_18510 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD VagYM4_18530 IPR005746 Thioredoxin VagYM4_18530 IPR017937 Thioredoxin, conserved site VagYM4_18530 IPR013766 Thioredoxin domain VagYM4_18530 IPR036249 Thioredoxin-like superfamily VagYM4_18540 IPR003834 Cytochrome C biogenesis protein, transmembrane domain VagYM4_18540 IPR035671 DsbD gamma VagYM4_18540 IPR013766 Thioredoxin domain VagYM4_18540 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily VagYM4_18540 IPR022910 Thiol:disulphide interchange protein DsbD VagYM4_18540 IPR036249 Thioredoxin-like superfamily VagYM4_18540 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain VagYM4_18540 IPR017937 Thioredoxin, conserved site VagYM4_18560 IPR011006 CheY-like superfamily VagYM4_18560 IPR001789 Signal transduction response regulator, receiver domain VagYM4_18560 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_18560 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_18570 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_18570 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_18570 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_18570 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_18570 IPR005467 Histidine kinase domain VagYM4_18570 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_18580 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_18580 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_18580 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_18590 IPR005614 NrfD family VagYM4_18600 IPR037946 Tetrathionate reductase subunit A, MopB domain VagYM4_18600 IPR006656 Molybdopterin oxidoreductase VagYM4_18600 IPR009010 Aspartate decarboxylase-like domain superfamily VagYM4_18600 IPR006657 Molybdopterin dinucleotide-binding domain VagYM4_18600 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain VagYM4_18600 IPR041929 Tetrathionate reductase subunit A, N-terminal VagYM4_18610 IPR009056 Cytochrome c-like domain VagYM4_18610 IPR036909 Cytochrome c-like domain superfamily VagYM4_18610 IPR024167 Cytochrome c4-like VagYM4_18620 IPR009056 Cytochrome c-like domain VagYM4_18620 IPR036909 Cytochrome c-like domain superfamily VagYM4_18630 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type VagYM4_18630 IPR007498 Intermembrane transport protein PqiA-like VagYM4_18640 IPR003399 Mce/MlaD VagYM4_18670 IPR000914 Solute-binding protein family 5 domain VagYM4_18670 IPR030678 Peptide/nickel binding protein, MppA-type VagYM4_18670 IPR039424 Solute-binding protein family 5 VagYM4_18670 IPR023765 Solute-binding protein family 5, conserved site VagYM4_18680 IPR014732 Orotidine 5'-phosphate decarboxylase VagYM4_18680 IPR013785 Aldolase-type TIM barrel VagYM4_18680 IPR001754 Orotidine 5'-phosphate decarboxylase domain VagYM4_18680 IPR011060 Ribulose-phosphate binding barrel VagYM4_18680 IPR018089 Orotidine 5'-phosphate decarboxylase, active site VagYM4_18690 IPR030865 Lipopolysaccharide assembly protein B VagYM4_18690 IPR019734 Tetratricopeptide repeat VagYM4_18690 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_18690 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_18690 IPR041166 LapB, rubredoxin metal binding domain VagYM4_18700 IPR032906 Lipopolysaccharide assembly protein A VagYM4_18700 IPR010445 Lipopolysaccharide assembly protein A domain VagYM4_18710 IPR000119 Histone-like DNA-binding protein VagYM4_18710 IPR020816 Histone-like DNA-binding protein, conserved site VagYM4_18710 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily VagYM4_18710 IPR005685 Integration host factor, beta subunit VagYM4_18720 IPR022967 RNA-binding domain, S1 VagYM4_18720 IPR012340 Nucleic acid-binding, OB-fold VagYM4_18720 IPR000110 Ribosomal protein S1 VagYM4_18720 IPR003029 S1 domain VagYM4_18730 IPR003136 Cytidylate kinase VagYM4_18730 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18730 IPR011994 Cytidylate kinase domain VagYM4_18740 IPR002142 Peptidase S49 VagYM4_18740 IPR013703 Peptidase S49, N-terminal proteobacteria VagYM4_18740 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_18750 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_18750 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_18750 IPR036291 NAD(P)-binding domain superfamily VagYM4_18780 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain VagYM4_18780 IPR040982 DNA polymerase III alpha subunit finger domain VagYM4_18780 IPR023073 DNA polymerase, error-prone VagYM4_18780 IPR029460 DNA polymerase, helix-hairpin-helix motif VagYM4_18780 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type VagYM4_18780 IPR004013 PHP domain VagYM4_18780 IPR003141 Polymerase/histidinol phosphatase, N-terminal VagYM4_18780 IPR004805 DNA polymerase III, alpha subunit VagYM4_18790 IPR036061 CheW-like domain superfamily VagYM4_18790 IPR001789 Signal transduction response regulator, receiver domain VagYM4_18790 IPR024181 Chemotaxis response regulator CheV VagYM4_18790 IPR002545 CheW-like domain VagYM4_18790 IPR011006 CheY-like superfamily VagYM4_18800 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_18800 IPR000600 ROK family VagYM4_18800 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_18810 IPR011037 Pyruvate kinase-like, insert domain superfamily VagYM4_18810 IPR036918 Pyruvate kinase, C-terminal domain superfamily VagYM4_18810 IPR015795 Pyruvate kinase, C-terminal VagYM4_18810 IPR015793 Pyruvate kinase, barrel VagYM4_18810 IPR018209 Pyruvate kinase, active site VagYM4_18810 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_18810 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_18810 IPR001697 Pyruvate kinase VagYM4_18810 IPR015806 Pyruvate kinase, insert domain superfamily VagYM4_18820 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VagYM4_18820 IPR037483 YjjU-like VagYM4_18820 IPR002641 Patatin-like phospholipase domain VagYM4_18850 IPR000175 Sodium:neurotransmitter symporter VagYM4_18850 IPR037272 Sodium:neurotransmitter symporter superfamily VagYM4_18880 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component VagYM4_18880 IPR011299 PTS system glucose-specific IIBC component VagYM4_18880 IPR001996 Phosphotransferase system, IIB component, type 1 VagYM4_18880 IPR013013 Phosphotransferase system, EIIC component, type 1 VagYM4_18880 IPR003352 Phosphotransferase system, EIIC VagYM4_18880 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site VagYM4_18880 IPR036878 Glucose permease domain IIB VagYM4_18890 IPR015991 Uncharacterised hydrolase TatD-type VagYM4_18890 IPR018228 Deoxyribonuclease, TatD-related, conserved site VagYM4_18890 IPR001130 TatD family VagYM4_18890 IPR032466 Metal-dependent hydrolase VagYM4_18900 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18900 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal VagYM4_18900 IPR015199 DNA polymerase III, delta subunit, C-terminal VagYM4_18910 IPR018095 Thymidylate kinase, conserved site VagYM4_18910 IPR018094 Thymidylate kinase VagYM4_18910 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_18910 IPR039430 Thymidylate kinase-like domain VagYM4_18920 IPR003770 Endolytic murein transglycosylase VagYM4_18930 IPR018300 Aminotransferase, class IV, conserved site VagYM4_18930 IPR017824 Aminodeoxychorismate lyase, class IV VagYM4_18930 IPR001544 Aminotransferase class IV VagYM4_18930 IPR036038 Aminotransferase-like, PLP-dependent enzymes VagYM4_18940 IPR016039 Thiolase-like VagYM4_18940 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VagYM4_18940 IPR014030 Beta-ketoacyl synthase, N-terminal VagYM4_18940 IPR014031 Beta-ketoacyl synthase, C-terminal VagYM4_18940 IPR018201 Beta-ketoacyl synthase, active site VagYM4_18940 IPR000794 Beta-ketoacyl synthase VagYM4_18940 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 VagYM4_18950 IPR006162 Phosphopantetheine attachment site VagYM4_18950 IPR009081 Phosphopantetheine binding ACP domain VagYM4_18950 IPR003231 Acyl carrier protein (ACP) VagYM4_18950 IPR036736 ACP-like superfamily VagYM4_18960 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase VagYM4_18960 IPR036291 NAD(P)-binding domain superfamily VagYM4_18960 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_18960 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_18970 IPR024925 Malonyl CoA-acyl carrier protein transacylase VagYM4_18970 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VagYM4_18970 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type VagYM4_18970 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding VagYM4_18970 IPR001227 Acyl transferase domain superfamily VagYM4_18970 IPR014043 Acyl transferase VagYM4_18980 IPR016039 Thiolase-like VagYM4_18980 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 VagYM4_18980 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM4_18980 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal VagYM4_18990 IPR012281 Phospholipid biosynthesis protein, PlsX-like VagYM4_18990 IPR003664 Fatty acid synthesis PlsX protein VagYM4_19000 IPR002677 Ribosomal protein L32p VagYM4_19000 IPR011332 Zinc-binding ribosomal protein VagYM4_19010 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria VagYM4_19010 IPR003772 Large ribosomal RNA subunit accumulation protein YceD VagYM4_19020 IPR029001 Inosine triphosphate pyrophosphatase-like VagYM4_19020 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein VagYM4_19030 IPR036986 RNA-binding S4 domain superfamily VagYM4_19030 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_19030 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site VagYM4_19030 IPR006225 Pseudouridine synthase, RluC/RluD VagYM4_19030 IPR002942 RNA-binding S4 domain VagYM4_19030 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_19040 IPR003029 S1 domain VagYM4_19040 IPR022967 RNA-binding domain, S1 VagYM4_19040 IPR004659 Ribonuclease E/G VagYM4_19040 IPR028878 Ribonuclease E VagYM4_19040 IPR021968 Polyribonucleotide phosphorylase C-terminal VagYM4_19040 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G VagYM4_19040 IPR012340 Nucleic acid-binding, OB-fold VagYM4_19050 IPR011547 SLC26A/SulP transporter domain VagYM4_19050 IPR001902 SLC26A/SulP transporter VagYM4_19050 IPR002645 STAS domain VagYM4_19050 IPR036513 STAS domain superfamily VagYM4_19050 IPR018045 Sulphate anion transporter, conserved site VagYM4_19060 IPR017867 Protein-tyrosine phosphatase, low molecular weight VagYM4_19060 IPR036196 Phosphotyrosine protein phosphatase I superfamily VagYM4_19060 IPR023485 Phosphotyrosine protein phosphatase I VagYM4_19070 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR VagYM4_19070 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain VagYM4_19070 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19090 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19090 IPR006083 Phosphoribulokinase/uridine kinase VagYM4_19090 IPR026008 Uridine kinase VagYM4_19090 IPR000764 Uridine kinase-like VagYM4_19100 IPR000808 Mrp, conserved site VagYM4_19100 IPR019591 Mrp/NBP35 ATP-binding protein VagYM4_19100 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VagYM4_19100 IPR034904 Fe-S cluster assembly domain superfamily VagYM4_19100 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19110 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_19110 IPR033911 Methioninyl-tRNA synthetase core domain VagYM4_19110 IPR014758 Methionyl-tRNA synthetase VagYM4_19110 IPR023458 Methionine-tRNA ligase, type 1 VagYM4_19110 IPR029038 Methionyl-tRNA synthetase, Zn-domain VagYM4_19110 IPR012340 Nucleic acid-binding, OB-fold VagYM4_19110 IPR015413 Methionyl/Leucyl tRNA synthetase VagYM4_19110 IPR002547 tRNA-binding domain VagYM4_19110 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding VagYM4_19110 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal VagYM4_19110 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain VagYM4_19110 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_19140 IPR000524 Transcription regulator HTH, GntR VagYM4_19140 IPR008920 Transcription regulator FadR/GntR, C-terminal VagYM4_19140 IPR028374 FadR, C-terminal domain VagYM4_19140 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_19140 IPR014178 Fatty acid response transcription factor FadR VagYM4_19140 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_19150 IPR004671 Na+/H+ antiporter NhaB VagYM4_19160 IPR022920 Disulphide bond formation protein DsbB VagYM4_19160 IPR023380 DsbB-like superfamily VagYM4_19160 IPR003752 Disulphide bond formation protein DsbB/BdbC VagYM4_19170 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19170 IPR004027 SEC-C motif VagYM4_19170 IPR000185 Protein translocase subunit SecA VagYM4_19170 IPR011115 SecA DEAD-like, N-terminal VagYM4_19170 IPR014018 SecA motor DEAD VagYM4_19170 IPR036266 SecA, Wing/Scaffold superfamily VagYM4_19170 IPR011116 SecA Wing/Scaffold VagYM4_19170 IPR011130 SecA, preprotein cross-linking domain VagYM4_19170 IPR036670 SecA, preprotein cross-linking domain superfamily VagYM4_19180 IPR013785 Aldolase-type TIM barrel VagYM4_19180 IPR032886 tRNA-dihydrouridine(16) synthase VagYM4_19180 IPR035587 DUS-like, FMN-binding domain VagYM4_19180 IPR018517 tRNA-dihydrouridine synthase, conserved site VagYM4_19180 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal VagYM4_19180 IPR001269 tRNA-dihydrouridine synthase VagYM4_19190 IPR029787 Nucleotide cyclase VagYM4_19190 IPR033424 Membrane-associated sensor domain VagYM4_19190 IPR000160 GGDEF domain VagYM4_19200 IPR017853 Glycoside hydrolase superfamily VagYM4_19200 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_19200 IPR017069 Maltodextrin glucosidase VagYM4_19200 IPR014756 Immunoglobulin E-set VagYM4_19200 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain VagYM4_19200 IPR013780 Glycosyl hydrolase, all-beta VagYM4_19210 IPR015856 ABC transporter, CbiO/EcfA subunit VagYM4_19210 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19210 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 VagYM4_19210 IPR003439 ABC transporter-like VagYM4_19210 IPR017871 ABC transporter, conserved site VagYM4_19210 IPR003593 AAA+ ATPase domain VagYM4_19220 IPR001851 ABC transporter, permease VagYM4_19240 IPR007334 Uncharacterised protein family UPF0208 VagYM4_19250 IPR023865 Aliphatic acid kinase, short-chain, conserved site VagYM4_19250 IPR000890 Aliphatic acid kinase, short-chain VagYM4_19250 IPR004372 Acetate/propionate kinase VagYM4_19260 IPR002505 Phosphate acetyl/butaryl transferase VagYM4_19260 IPR010766 DRTGG VagYM4_19260 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily VagYM4_19260 IPR004614 Phosphate acetyltransferase VagYM4_19260 IPR016475 Phosphate acetyltransferase, bacteria VagYM4_19260 IPR042113 Phosphate acetyltransferase, domain 1 VagYM4_19260 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19260 IPR042112 Phosphate acetyltransferase, domain 2 VagYM4_19270 IPR025105 Domain of unknown function DUF4010 VagYM4_19290 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VagYM4_19290 IPR010987 Glutathione S-transferase, C-terminal-like VagYM4_19290 IPR016639 Glutathione S-transferase Omega/GSH VagYM4_19290 IPR004045 Glutathione S-transferase, N-terminal VagYM4_19290 IPR040079 Glutathione Transferase family VagYM4_19290 IPR036249 Thioredoxin-like superfamily VagYM4_19300 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19300 IPR003439 ABC transporter-like VagYM4_19300 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_19300 IPR003593 AAA+ ATPase domain VagYM4_19300 IPR017871 ABC transporter, conserved site VagYM4_19310 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_19310 IPR017871 ABC transporter, conserved site VagYM4_19310 IPR003439 ABC transporter-like VagYM4_19310 IPR003593 AAA+ ATPase domain VagYM4_19310 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19320 IPR035906 MetI-like superfamily VagYM4_19320 IPR025966 Oligopeptide transport permease C-like, N-terminal domain VagYM4_19320 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_19330 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_19330 IPR035906 MetI-like superfamily VagYM4_19340 IPR039424 Solute-binding protein family 5 VagYM4_19340 IPR030678 Peptide/nickel binding protein, MppA-type VagYM4_19340 IPR023765 Solute-binding protein family 5, conserved site VagYM4_19340 IPR000914 Solute-binding protein family 5 domain VagYM4_19350 IPR003448 Molybdopterin biosynthesis MoaE VagYM4_19350 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily VagYM4_19360 IPR003749 Sulfur carrier ThiS/MoaD-like VagYM4_19360 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp VagYM4_19360 IPR012675 Beta-grasp domain superfamily VagYM4_19370 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily VagYM4_19370 IPR023045 Molybdenum cofactor biosynthesis C VagYM4_19370 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain VagYM4_19380 IPR001453 MoaB/Mog domain VagYM4_19380 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria VagYM4_19380 IPR036425 MoaB/Mog-like domain superfamily VagYM4_19380 IPR012245 Molybdenum cofactor biosynthesis protein MoaB VagYM4_19380 IPR008284 Molybdenum cofactor biosynthesis, conserved site VagYM4_19390 IPR007197 Radical SAM VagYM4_19390 IPR013483 Molybdenum cofactor biosynthesis protein A VagYM4_19390 IPR010505 Molybdenum cofactor synthesis C-terminal VagYM4_19390 IPR013785 Aldolase-type TIM barrel VagYM4_19390 IPR006638 Elp3/MiaB/NifB VagYM4_19400 IPR038136 Gluconeogenesis factor superfamily VagYM4_19400 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 VagYM4_19400 IPR010119 Gluconeogenesis factor VagYM4_19410 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_19410 IPR036641 HPT domain superfamily VagYM4_19420 IPR003593 AAA+ ATPase domain VagYM4_19420 IPR001789 Signal transduction response regulator, receiver domain VagYM4_19420 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19420 IPR011006 CheY-like superfamily VagYM4_19420 IPR009057 Homeobox-like domain superfamily VagYM4_19420 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_19420 IPR002197 DNA binding HTH domain, Fis-type VagYM4_19420 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_19420 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_19430 IPR004807 UvrABC system, subunit B VagYM4_19430 IPR041471 UvrB, interaction domain VagYM4_19430 IPR024759 UvrB, YAD/RRR-motif-containing domain VagYM4_19430 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_19430 IPR036876 UVR domain superfamily VagYM4_19430 IPR001943 UVR domain VagYM4_19430 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_19430 IPR001650 Helicase, C-terminal VagYM4_19430 IPR006935 Helicase/UvrB, N-terminal VagYM4_19440 IPR003667 NqrDE/RnfAE VagYM4_19440 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA VagYM4_19450 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria VagYM4_19450 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_19450 IPR007202 4Fe-4S domain VagYM4_19450 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_19450 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB VagYM4_19460 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain VagYM4_19460 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC VagYM4_19460 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily VagYM4_19460 IPR026902 RnfC Barrel sandwich hybrid domain VagYM4_19460 IPR009051 Alpha-helical ferredoxin VagYM4_19460 IPR019554 Soluble ligand binding domain VagYM4_19460 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_19460 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_19470 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD VagYM4_19470 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D VagYM4_19480 IPR007329 FMN-binding VagYM4_19480 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG VagYM4_19490 IPR010968 Ion-translocating oxidoreductase complex subunit E VagYM4_19490 IPR003667 NqrDE/RnfAE VagYM4_19500 IPR004035 Endonuclease III, iron-sulphur binding site VagYM4_19500 IPR005759 Endonuclease III VagYM4_19500 IPR003265 HhH-GPD domain VagYM4_19500 IPR011257 DNA glycosylase VagYM4_19500 IPR004036 Endonuclease III-like, conserved site-2 VagYM4_19500 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif VagYM4_19500 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal VagYM4_19500 IPR000445 Helix-hairpin-helix motif VagYM4_19510 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_19510 IPR018146 Glyoxalase I, conserved site VagYM4_19510 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VagYM4_19510 IPR004361 Glyoxalase I VagYM4_19510 IPR037523 Vicinal oxygen chelate (VOC) domain VagYM4_19520 IPR020206 Uncharacterised protein family, VP2110 VagYM4_19530 IPR041544 MotY N-terminal domain VagYM4_19530 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_19530 IPR006665 OmpA-like domain VagYM4_19530 IPR036737 OmpA-like domain superfamily VagYM4_19550 IPR036397 Ribonuclease H superfamily VagYM4_19550 IPR005987 Ribonuclease T VagYM4_19550 IPR012337 Ribonuclease H-like superfamily VagYM4_19550 IPR013520 Exonuclease, RNase T/DNA polymerase III VagYM4_19560 IPR032813 Putative Na+/H+ antiporter, N-terminal VagYM4_19560 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal VagYM4_19580 IPR036249 Thioredoxin-like superfamily VagYM4_19580 IPR014434 Monothiol glutaredoxin VagYM4_19580 IPR004480 Monothiol glutaredoxin-related VagYM4_19580 IPR002109 Glutaredoxin VagYM4_19580 IPR033658 Glutaredoxin, PICOT-like VagYM4_19590 IPR019833 Manganese/iron superoxide dismutase, binding site VagYM4_19590 IPR001189 Manganese/iron superoxide dismutase VagYM4_19590 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily VagYM4_19590 IPR019831 Manganese/iron superoxide dismutase, N-terminal VagYM4_19590 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily VagYM4_19590 IPR019832 Manganese/iron superoxide dismutase, C-terminal VagYM4_19620 IPR018211 Alcohol dehydrogenase, iron-type, conserved site VagYM4_19620 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase VagYM4_19620 IPR015590 Aldehyde dehydrogenase domain VagYM4_19620 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain VagYM4_19620 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_19620 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA VagYM4_19620 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_19620 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_19620 IPR039697 Iron-type alcohol dehydrogenase-like VagYM4_19630 IPR002771 Multiple antibiotic resistance (MarC)-related VagYM4_19640 IPR014710 RmlC-like jelly roll fold VagYM4_19640 IPR028325 Voltage-gated potassium channel VagYM4_19640 IPR005821 Ion transport domain VagYM4_19640 IPR000595 Cyclic nucleotide-binding domain VagYM4_19640 IPR018488 Cyclic nucleotide-binding, conserved site VagYM4_19640 IPR018490 Cyclic nucleotide-binding-like VagYM4_19650 IPR012080 Aspartate-semialdehyde dehydrogenase VagYM4_19650 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site VagYM4_19650 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type VagYM4_19650 IPR036291 NAD(P)-binding domain superfamily VagYM4_19650 IPR000534 Semialdehyde dehydrogenase, NAD-binding VagYM4_19650 IPR012280 Semialdehyde dehydrogenase, dimerisation domain VagYM4_19660 IPR004770 Na+/H+ antiporter NhaC VagYM4_19660 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal VagYM4_19690 IPR007358 Nucleoid-associated protein NdpA VagYM4_19700 IPR023202 YejL-like superfamily VagYM4_19700 IPR009857 Uncharacterised protein family UPF0352 VagYM4_19710 IPR024588 Inner membrane protein YejM, N-terminal VagYM4_19710 IPR012159 Inner membrane protein YejM VagYM4_19710 IPR000917 Sulfatase, N-terminal VagYM4_19710 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_19720 IPR000286 Histone deacetylase family VagYM4_19720 IPR023801 Histone deacetylase domain VagYM4_19720 IPR037138 Histone deacetylase domain superfamily VagYM4_19720 IPR023696 Ureohydrolase domain superfamily VagYM4_19730 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_19730 IPR036291 NAD(P)-binding domain superfamily VagYM4_19750 IPR005738 DNA topoisomerase III VagYM4_19750 IPR006171 TOPRIM domain VagYM4_19750 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 VagYM4_19750 IPR000380 DNA topoisomerase, type IA VagYM4_19750 IPR003601 DNA topoisomerase, type IA, domain 2 VagYM4_19750 IPR003602 DNA topoisomerase, type IA, DNA-binding domain VagYM4_19750 IPR023405 DNA topoisomerase, type IA, core domain VagYM4_19750 IPR023406 DNA topoisomerase, type IA, active site VagYM4_19750 IPR034144 DNA topoisomerase 3-like, TOPRIM domain VagYM4_19750 IPR013497 DNA topoisomerase, type IA, central VagYM4_19750 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 VagYM4_19750 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 VagYM4_19760 IPR026021 Putative NAD(P)H nitroreductase YdjA-like VagYM4_19760 IPR000415 Nitroreductase-like VagYM4_19760 IPR029479 Nitroreductase VagYM4_19780 IPR013785 Aldolase-type TIM barrel VagYM4_19780 IPR023753 FAD/NAD(P)-binding domain VagYM4_19780 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_19780 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal VagYM4_19790 IPR033854 Signal peptide peptidase A VagYM4_19790 IPR002142 Peptidase S49 VagYM4_19790 IPR004635 Peptidase S49, SppA VagYM4_19790 IPR004634 Peptidase S49, protease IV VagYM4_19790 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_19800 IPR006033 Type I L-asparaginase family VagYM4_19800 IPR036152 Asparaginase/glutaminase-like superfamily VagYM4_19800 IPR027475 Asparaginase/glutaminase, active site 2 VagYM4_19800 IPR040919 Asparaginase/glutaminase, C-terminal VagYM4_19800 IPR006034 Asparaginase/glutaminase-like VagYM4_19800 IPR037152 L-asparaginase, N-terminal domain superfamily VagYM4_19800 IPR027474 L-asparaginase, N-terminal VagYM4_19800 IPR041725 Type I (cytosolic) L-asparaginase VagYM4_19800 IPR027473 L-asparaginase, C-terminal VagYM4_19800 IPR020827 Asparaginase/glutaminase, active site 1 VagYM4_19810 IPR009749 Protein of unknown function DUF1315 VagYM4_19830 IPR011057 Mss4-like superfamily VagYM4_19830 IPR002579 Peptide methionine sulphoxide reductase MrsB VagYM4_19830 IPR028427 Peptide methionine sulfoxide reductase VagYM4_19840 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family VagYM4_19840 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain VagYM4_19840 IPR036291 NAD(P)-binding domain superfamily VagYM4_19840 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I VagYM4_19840 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain VagYM4_19840 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site VagYM4_19850 IPR014718 Glycoside hydrolase-type carbohydrate-binding VagYM4_19850 IPR025532 Glucose-6-phosphate 1-epimerase VagYM4_19850 IPR011013 Galactose mutarotase-like domain superfamily VagYM4_19850 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase VagYM4_19860 IPR033479 Double Cache domain 1 VagYM4_19860 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_19860 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_19860 IPR000727 Target SNARE coiled-coil homology domain VagYM4_19860 IPR003660 HAMP domain VagYM4_19870 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted VagYM4_19870 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_19870 IPR025714 Methyltransferase domain VagYM4_19900 IPR001952 Alkaline phosphatase VagYM4_19900 IPR018299 Alkaline phosphatase, active site VagYM4_19900 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_19920 IPR037523 Vicinal oxygen chelate (VOC) domain VagYM4_19920 IPR018146 Glyoxalase I, conserved site VagYM4_19920 IPR004361 Glyoxalase I VagYM4_19920 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VagYM4_19920 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_19930 IPR007138 Antibiotic biosynthesis monooxygenase domain VagYM4_19930 IPR011008 Dimeric alpha-beta barrel VagYM4_19940 IPR006685 Mechanosensitive ion channel MscS VagYM4_19940 IPR008910 Conserved TM helix VagYM4_19940 IPR023408 Mechanosensitive ion channel MscS domain superfamily VagYM4_19940 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 VagYM4_19940 IPR006686 Mechanosensitive ion channel MscS, conserved site VagYM4_19940 IPR011066 Mechanosensitive ion channel MscS, C-terminal VagYM4_19940 IPR010920 LSM domain superfamily VagYM4_19950 IPR005358 Putative zinc- or iron-chelating domain containing protein VagYM4_19950 IPR008228 Uncharacterised conserved protein UCP006173 VagYM4_19960 IPR007341 Transglycosylase-associated protein VagYM4_19970 IPR005358 Putative zinc- or iron-chelating domain containing protein VagYM4_19990 IPR005130 Serine dehydratase-like, alpha subunit VagYM4_19990 IPR021144 Uncharacterised protein family UPF0597 VagYM4_20000 IPR035959 RutC-like superfamily VagYM4_20000 IPR006056 RidA family VagYM4_20000 IPR019897 RidA, conserved site VagYM4_20000 IPR006175 YjgF/YER057c/UK114 family VagYM4_20020 IPR023271 Aquaporin-like VagYM4_20020 IPR022357 Major intrinsic protein, conserved site VagYM4_20020 IPR000425 Major intrinsic protein VagYM4_20020 IPR023743 Aquaporin Z VagYM4_20020 IPR034294 Aquaporin transporter VagYM4_20030 IPR034137 RecR, TOPRIM domain VagYM4_20030 IPR006171 TOPRIM domain VagYM4_20030 IPR000093 DNA recombination protein RecR VagYM4_20030 IPR015967 Recombination protein RecR, conserved site VagYM4_20030 IPR023628 Recombination protein RecR, C4-type zinc finger VagYM4_20030 IPR023627 Recombination protein RecR VagYM4_20040 IPR004401 Nucleoid-associated protein YbaB/EbfC family VagYM4_20040 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily VagYM4_20050 IPR003593 AAA+ ATPase domain VagYM4_20050 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal VagYM4_20050 IPR001270 ClpA/B family VagYM4_20050 IPR012763 DNA polymerase III, subunit gamma/ tau VagYM4_20050 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV VagYM4_20050 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily VagYM4_20050 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_20050 IPR021029 DNA polymerase III, tau subunit, domain V VagYM4_20050 IPR022754 DNA polymerase III, gamma subunit, domain III VagYM4_20060 IPR029057 Phosphoribosyltransferase-like VagYM4_20060 IPR000836 Phosphoribosyltransferase domain VagYM4_20060 IPR005764 Adenine phosphoribosyl transferase VagYM4_20070 IPR007401 Protein of unknown function DUF454 VagYM4_20090 IPR011006 CheY-like superfamily VagYM4_20090 IPR036457 PPM-type phosphatase domain superfamily VagYM4_20090 IPR001789 Signal transduction response regulator, receiver domain VagYM4_20090 IPR028616 Regulator of RpoS VagYM4_20090 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_20100 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_20100 IPR005119 LysR, substrate-binding VagYM4_20100 IPR000847 Transcription regulator HTH, LysR VagYM4_20100 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_20110 IPR029057 Phosphoribosyltransferase-like VagYM4_20110 IPR005854 Amidophosphoribosyltransferase VagYM4_20110 IPR035584 Amidophosphoribosyltransferase, N-terminal VagYM4_20110 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_20110 IPR017932 Glutamine amidotransferase type 2 domain VagYM4_20110 IPR000836 Phosphoribosyltransferase domain VagYM4_20120 IPR003825 Colicin V production, CvpA VagYM4_20130 IPR007730 Sporulation-like domain VagYM4_20130 IPR032898 Cell division protein DedD VagYM4_20130 IPR036680 Sporulation-like domain superfamily VagYM4_20140 IPR001645 Folylpolyglutamate synthetase VagYM4_20140 IPR018109 Folylpolyglutamate synthetase, conserved site VagYM4_20140 IPR013221 Mur ligase, central VagYM4_20140 IPR036565 Mur-like, catalytic domain superfamily VagYM4_20140 IPR036615 Mur ligase, C-terminal domain superfamily VagYM4_20140 IPR004101 Mur ligase, C-terminal VagYM4_20150 IPR034733 Acetyl-CoA carboxylase VagYM4_20150 IPR041010 Acetyl-coA carboxylase zinc finger domain VagYM4_20150 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal VagYM4_20150 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_20150 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit VagYM4_20160 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_20160 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain VagYM4_20160 IPR020095 Pseudouridine synthase I, TruA, C-terminal VagYM4_20160 IPR001406 Pseudouridine synthase I, TruA VagYM4_20180 IPR036291 NAD(P)-binding domain superfamily VagYM4_20180 IPR012280 Semialdehyde dehydrogenase, dimerisation domain VagYM4_20180 IPR012080 Aspartate-semialdehyde dehydrogenase VagYM4_20180 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type VagYM4_20180 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site VagYM4_20180 IPR000534 Semialdehyde dehydrogenase, NAD-binding VagYM4_20190 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VagYM4_20190 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain VagYM4_20190 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain VagYM4_20190 IPR036291 NAD(P)-binding domain superfamily VagYM4_20190 IPR020921 Erythronate-4-phosphate dehydrogenase VagYM4_20190 IPR038251 PdxB, dimerisation domain superfamily VagYM4_20190 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM4_20200 IPR016039 Thiolase-like VagYM4_20200 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain VagYM4_20200 IPR014030 Beta-ketoacyl synthase, N-terminal VagYM4_20200 IPR014031 Beta-ketoacyl synthase, C-terminal VagYM4_20200 IPR018201 Beta-ketoacyl synthase, active site VagYM4_20200 IPR000794 Beta-ketoacyl synthase VagYM4_20210 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC VagYM4_20210 IPR008471 MnmC-like methyltransferase VagYM4_20210 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_20210 IPR006076 FAD dependent oxidoreductase VagYM4_20210 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal VagYM4_20220 IPR005025 NADPH-dependent FMN reductase-like VagYM4_20220 IPR029039 Flavoprotein-like superfamily VagYM4_20230 IPR014987 Uncharacterised protein family YfcL VagYM4_20240 IPR007411 Elongation factor P hydroxylase VagYM4_20250 IPR005115 Uncharacterised domain UPF0126 VagYM4_20260 IPR000453 Chorismate synthase VagYM4_20260 IPR035904 Chorismate synthase AroC superfamily VagYM4_20260 IPR020541 Chorismate synthase, conserved site VagYM4_20270 IPR007848 Methyltransferase small domain VagYM4_20270 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_20270 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase VagYM4_20270 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific VagYM4_20270 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_20270 IPR004556 Methyltransferase HemK-like VagYM4_20280 IPR002625 Smr domain VagYM4_20280 IPR036063 Smr domain superfamily VagYM4_20280 IPR022990 Uncharacterised protein family UPF0115 VagYM4_20290 IPR029033 Histidine phosphatase superfamily VagYM4_20290 IPR004449 Phosphohistidine phosphatase SixA VagYM4_20290 IPR013078 Histidine phosphatase superfamily, clade-1 VagYM4_20300 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like VagYM4_20300 IPR011765 Peptidase M16, N-terminal VagYM4_20300 IPR001431 Peptidase M16, zinc-binding site VagYM4_20300 IPR007863 Peptidase M16, C-terminal VagYM4_20300 IPR032632 Peptidase M16, middle/third domain VagYM4_20320 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding VagYM4_20320 IPR001753 Enoyl-CoA hydratase/isomerase VagYM4_20320 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site VagYM4_20320 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal VagYM4_20320 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_20320 IPR012802 Fatty oxidation complex, alpha subunit FadJ VagYM4_20320 IPR036291 NAD(P)-binding domain superfamily VagYM4_20320 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_20320 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site VagYM4_20330 IPR002155 Thiolase VagYM4_20330 IPR020617 Thiolase, C-terminal VagYM4_20330 IPR016039 Thiolase-like VagYM4_20330 IPR020613 Thiolase, conserved site VagYM4_20330 IPR020616 Thiolase, N-terminal VagYM4_20330 IPR012806 Acetyl-CoA C-acyltransferase FadI VagYM4_20340 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 VagYM4_20340 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_20340 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site VagYM4_20340 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_20340 IPR039425 RNA polymerase sigma-70 like VagYM4_20340 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_20340 IPR014284 RNA polymerase sigma-70 like domain VagYM4_20340 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_20360 IPR042117 OMPP1/FadL/TodX superfamily VagYM4_20360 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_20370 IPR042117 OMPP1/FadL/TodX superfamily VagYM4_20370 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_20380 IPR007428 MlaA lipoprotein VagYM4_20390 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_20390 IPR019734 Tetratricopeptide repeat VagYM4_20390 IPR005616 CcmH/CycL/Ccl2/NrfF family VagYM4_20390 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_20390 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily VagYM4_20400 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_20400 IPR019734 Tetratricopeptide repeat VagYM4_20400 IPR005616 CcmH/CycL/Ccl2/NrfF family VagYM4_20400 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_20400 IPR017560 Cytochrome c-type biogenesis protein CcmI VagYM4_20400 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily VagYM4_20410 IPR013766 Thioredoxin domain VagYM4_20410 IPR017937 Thioredoxin, conserved site VagYM4_20410 IPR036249 Thioredoxin-like superfamily VagYM4_20410 IPR013740 Redoxin VagYM4_20410 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE VagYM4_20420 IPR003568 Cytochrome c-type biogenesis protein CcmF VagYM4_20420 IPR003567 Cytochrome c-type biogenesis protein VagYM4_20420 IPR002541 Cytochrome c assembly protein VagYM4_20420 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal VagYM4_20430 IPR004329 CcmE/CycJ protein VagYM4_20430 IPR036127 CcmE-like superfamily VagYM4_20440 IPR007078 Haem exporter protein D (CcmD) VagYM4_20450 IPR002541 Cytochrome c assembly protein VagYM4_20450 IPR003557 Cytochrome c-type biogenesis protein CcmC VagYM4_20460 IPR003544 Cytochrome c-type biogenesis protein CcmB VagYM4_20460 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria VagYM4_20470 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_20470 IPR005895 ABC transporter, haem export, CcmA VagYM4_20470 IPR003439 ABC transporter-like VagYM4_20470 IPR003593 AAA+ ATPase domain VagYM4_20470 IPR017871 ABC transporter, conserved site VagYM4_20490 IPR036061 CheW-like domain superfamily VagYM4_20490 IPR039315 Chemotaxis protein CheW VagYM4_20490 IPR002545 CheW-like domain VagYM4_20510 IPR025669 AAA domain VagYM4_20510 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_20520 IPR011006 CheY-like superfamily VagYM4_20520 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type VagYM4_20520 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase VagYM4_20520 IPR001789 Signal transduction response regulator, receiver domain VagYM4_20520 IPR035909 Methylesterase CheB, C-terminal VagYM4_20530 IPR004105 Histidine kinase CheA-like, homodimeric domain VagYM4_20530 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily VagYM4_20530 IPR036061 CheW-like domain superfamily VagYM4_20530 IPR002545 CheW-like domain VagYM4_20530 IPR036641 HPT domain superfamily VagYM4_20530 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_20530 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_20530 IPR001789 Signal transduction response regulator, receiver domain VagYM4_20530 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_20530 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_20530 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_20530 IPR011006 CheY-like superfamily VagYM4_20530 IPR005467 Histidine kinase domain VagYM4_20540 IPR007439 Chemotaxis phosphatase, CheZ VagYM4_20550 IPR001789 Signal transduction response regulator, receiver domain VagYM4_20550 IPR011006 CheY-like superfamily VagYM4_20560 IPR007624 RNA polymerase sigma-70 region 3 VagYM4_20560 IPR028617 RNA polymerase sigma factor FliA VagYM4_20560 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_20560 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_20560 IPR012845 RNA polymerase sigma factor, FliA/WhiG VagYM4_20560 IPR007630 RNA polymerase sigma-70 region 4 VagYM4_20560 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_20560 IPR000943 RNA polymerase sigma-70 VagYM4_20560 IPR014284 RNA polymerase sigma-70 like domain VagYM4_20570 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_20570 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 VagYM4_20570 IPR025501 ATP binding protein MinD VagYM4_20580 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_20580 IPR003593 AAA+ ATPase domain VagYM4_20580 IPR020006 Flagellar biosynthesis protein FlhF VagYM4_20580 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain VagYM4_20590 IPR001712 Type III secretion system FHIPEP VagYM4_20590 IPR025505 FHIPEP conserved site VagYM4_20590 IPR042196 FHIPEP, domain 4 VagYM4_20590 IPR042193 FHIPEP, domain 3 VagYM4_20590 IPR042194 FHIPEP, domain 1 VagYM4_20590 IPR006301 Flagellar biosynthesis protein FlhA VagYM4_20600 IPR006135 Type III secretion system substrate exporter VagYM4_20600 IPR006136 Flagellar biosynthetic protein FlhB VagYM4_20600 IPR029025 Type III secretion system substrate exporter, C-terminal VagYM4_20610 IPR002010 Type III secretion system inner membrane R protein VagYM4_20610 IPR006303 Flagellar biosynthesis protein FliR VagYM4_20620 IPR006305 Flagellar biosynthesis protein FliQ VagYM4_20620 IPR002191 Bacterial export protein family 3 VagYM4_20630 IPR005838 Type III secretion system inner membrane P protein VagYM4_20630 IPR005837 Flagellar transport protein FliP VagYM4_20640 IPR022781 Flagellar biosynthesis protein, FliO VagYM4_20650 IPR001543 Surface presentation of antigen (SpoA) VagYM4_20650 IPR036429 SpoA-like superfamily VagYM4_20650 IPR012826 Flagellar motor switch FliN VagYM4_20650 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb VagYM4_20660 IPR001689 Flagellar motor switch protein FliM VagYM4_20660 IPR001543 Surface presentation of antigen (SpoA) VagYM4_20660 IPR036429 SpoA-like superfamily VagYM4_20660 IPR028976 CheC-like superfamily VagYM4_20700 IPR005714 ATPase, type III secretion system, FliI/YscN VagYM4_20700 IPR020005 Flagellar export ATPase FliI, clade 1 VagYM4_20700 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_20700 IPR040627 T3SS EscN ATPase, C-terminal VagYM4_20700 IPR032463 ATPase, type III secretion system, FliI VagYM4_20700 IPR003593 AAA+ ATPase domain VagYM4_20700 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site VagYM4_20700 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain VagYM4_20720 IPR011002 Flagellar motor switch protein FliG, alpha-helical VagYM4_20720 IPR000090 Flagellar motor switch protein FliG VagYM4_20720 IPR028263 Flagellar motor switch protein FliG, N-terminal domain VagYM4_20720 IPR023087 Flagellar motor switch protein FliG, C-terminal VagYM4_20720 IPR032779 Flagellar motor switch protein FliG, middle domain VagYM4_20730 IPR006182 Secretory protein YscJ/FliF VagYM4_20730 IPR000067 Flagellar M-ring protein FliF VagYM4_20730 IPR013556 Flagellar M-ring C-terminal VagYM4_20740 IPR001624 Flagellar hook-basal body complex protein FliE VagYM4_20750 IPR002197 DNA binding HTH domain, Fis-type VagYM4_20750 IPR009057 Homeobox-like domain superfamily VagYM4_20750 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_20750 IPR001789 Signal transduction response regulator, receiver domain VagYM4_20750 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_20750 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_20750 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_20750 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_20750 IPR029995 Transcriptional activator SfnR/FlbD VagYM4_20750 IPR011006 CheY-like superfamily VagYM4_20750 IPR003593 AAA+ ATPase domain VagYM4_20760 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_20760 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_20760 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_20760 IPR005467 Histidine kinase domain VagYM4_20760 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_20760 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_20760 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_20770 IPR002197 DNA binding HTH domain, Fis-type VagYM4_20770 IPR009057 Homeobox-like domain superfamily VagYM4_20770 IPR010518 Flagellar regulatory FleQ VagYM4_20770 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_20770 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_20770 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_20770 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_20770 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_20770 IPR003593 AAA+ ATPase domain VagYM4_20770 IPR011006 CheY-like superfamily VagYM4_20780 IPR003713 Flagellar protein FliS VagYM4_20780 IPR036584 Flagellar protein FliS superfamily VagYM4_20800 IPR010809 Flagellar hook-associated protein 2, C-terminal VagYM4_20800 IPR010810 Flagellin hook, IN motif VagYM4_20800 IPR040026 Flagellar hook-associated protein 2 VagYM4_20800 IPR003481 Flagellar hook-associated protein 2, N-terminal VagYM4_20810 IPR005186 FlaG protein VagYM4_20810 IPR035924 FlaG-like superfamily VagYM4_20820 IPR001029 Flagellin, D0/D1 domain VagYM4_20820 IPR042187 Flagellin, C-terminal domain, subdomain 2 VagYM4_20820 IPR010810 Flagellin hook, IN motif VagYM4_20820 IPR001492 Flagellin VagYM4_20830 IPR010810 Flagellin hook, IN motif VagYM4_20830 IPR001029 Flagellin, D0/D1 domain VagYM4_20830 IPR042187 Flagellin, C-terminal domain, subdomain 2 VagYM4_20830 IPR001492 Flagellin VagYM4_20840 IPR001492 Flagellin VagYM4_20840 IPR042187 Flagellin, C-terminal domain, subdomain 2 VagYM4_20840 IPR010810 Flagellin hook, IN motif VagYM4_20840 IPR001029 Flagellin, D0/D1 domain VagYM4_20850 IPR011008 Dimeric alpha-beta barrel VagYM4_20850 IPR006314 Dyp-type peroxidase VagYM4_20860 IPR021318 Protein of unknown function DUF2919 VagYM4_20900 IPR006660 Arsenate reductase-like VagYM4_20900 IPR006504 Transcriptional regulator Spx/MgsR VagYM4_20900 IPR036249 Thioredoxin-like superfamily VagYM4_20910 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site VagYM4_20910 IPR002933 Peptidase M20 VagYM4_20910 IPR011650 Peptidase M20, dimerisation domain VagYM4_20910 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria VagYM4_20910 IPR036264 Bacterial exopeptidase dimerisation domain VagYM4_20950 IPR002220 DapA-like VagYM4_20950 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA VagYM4_20950 IPR020624 Schiff base-forming aldolase, conserved site VagYM4_20950 IPR020625 Schiff base-forming aldolase, active site VagYM4_20950 IPR013785 Aldolase-type TIM barrel VagYM4_20970 IPR013766 Thioredoxin domain VagYM4_20970 IPR036249 Thioredoxin-like superfamily VagYM4_20970 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant VagYM4_20980 IPR002549 Transmembrane protein TqsA-like VagYM4_21000 IPR001915 Peptidase M48 VagYM4_21000 IPR019734 Tetratricopeptide repeat VagYM4_21000 IPR030873 Beta-barrel assembly-enhancing protease VagYM4_21000 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_21000 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_21010 IPR006659 Arsenate reductase VagYM4_21010 IPR006660 Arsenate reductase-like VagYM4_21010 IPR036249 Thioredoxin-like superfamily VagYM4_21020 IPR005025 NADPH-dependent FMN reductase-like VagYM4_21020 IPR010089 Flavoprotein WrbA-like VagYM4_21020 IPR001226 Flavodoxin, conserved site VagYM4_21020 IPR008254 Flavodoxin/nitric oxide synthase VagYM4_21020 IPR029039 Flavoprotein-like superfamily VagYM4_21050 IPR029935 Uracil permease VagYM4_21050 IPR006042 Xanthine/uracil permease VagYM4_21050 IPR006043 Xanthine/uracil/vitamin C permease VagYM4_21060 IPR029057 Phosphoribosyltransferase-like VagYM4_21060 IPR005765 Uracil phosphoribosyl transferase VagYM4_21060 IPR034332 Uracil phosphoribosyltransferase, bacterial-type VagYM4_21060 IPR000836 Phosphoribosyltransferase domain VagYM4_21070 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase VagYM4_21070 IPR036921 PurM-like, N-terminal domain superfamily VagYM4_21070 IPR016188 PurM-like, N-terminal domain VagYM4_21070 IPR010918 PurM-like, C-terminal domain VagYM4_21070 IPR036676 PurM-like, C-terminal domain superfamily VagYM4_21080 IPR001555 Phosphoribosylglycinamide formyltransferase, active site VagYM4_21080 IPR002376 Formyl transferase, N-terminal VagYM4_21080 IPR036477 Formyl transferase, N-terminal domain superfamily VagYM4_21080 IPR004607 Phosphoribosylglycinamide formyltransferase VagYM4_21090 IPR017932 Glutamine amidotransferase type 2 domain VagYM4_21090 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_21090 IPR026869 Putative glutamine amidotransferase type 2 VagYM4_21100 IPR004515 Phosphoheptose isomerase VagYM4_21100 IPR001347 Sugar isomerase (SIS) VagYM4_21100 IPR035461 GmhA/DiaA VagYM4_21110 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal VagYM4_21110 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type VagYM4_21110 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily VagYM4_21110 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal VagYM4_21110 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal VagYM4_21110 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain VagYM4_21110 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily VagYM4_21120 IPR011547 SLC26A/SulP transporter domain VagYM4_21120 IPR036513 STAS domain superfamily VagYM4_21120 IPR001902 SLC26A/SulP transporter VagYM4_21120 IPR002645 STAS domain VagYM4_21170 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain VagYM4_21170 IPR006309 DNA polymerase 3, epsilon subunit VagYM4_21170 IPR013520 Exonuclease, RNase T/DNA polymerase III VagYM4_21170 IPR012337 Ribonuclease H-like superfamily VagYM4_21170 IPR036397 Ribonuclease H superfamily VagYM4_21180 IPR022892 Ribonuclease HI VagYM4_21180 IPR036397 Ribonuclease H superfamily VagYM4_21180 IPR002156 Ribonuclease H domain VagYM4_21180 IPR012337 Ribonuclease H-like superfamily VagYM4_21190 IPR013216 Methyltransferase type 11 VagYM4_21190 IPR026669 Arsenite methyltransferase-like VagYM4_21190 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_21200 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain VagYM4_21200 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain VagYM4_21200 IPR017782 Hydroxyacylglutathione hydrolase VagYM4_21200 IPR001279 Metallo-beta-lactamase VagYM4_21200 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VagYM4_21210 IPR018392 LysM domain VagYM4_21210 IPR008258 Transglycosylase SLT domain 1 VagYM4_21210 IPR000189 Prokaryotic transglycosylase, active site VagYM4_21210 IPR023346 Lysozyme-like domain superfamily VagYM4_21210 IPR036779 LysM domain superfamily VagYM4_21230 IPR036691 Endonuclease/exonuclease/phosphatase superfamily VagYM4_21230 IPR005135 Endonuclease/exonuclease/phosphatase VagYM4_21230 IPR022958 Uncharacterised protein family UPF0294 VagYM4_21240 IPR002332 Nitrogen regulatory protein P-II, urydylation site VagYM4_21240 IPR002187 Nitrogen regulatory protein PII VagYM4_21240 IPR017918 Nitrogen regulatory protein PII, conserved site VagYM4_21240 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VagYM4_21240 IPR011322 Nitrogen regulatory PII-like, alpha/beta VagYM4_21250 IPR036909 Cytochrome c-like domain superfamily VagYM4_21250 IPR009056 Cytochrome c-like domain VagYM4_21260 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal VagYM4_21260 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal VagYM4_21260 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain VagYM4_21260 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal VagYM4_21260 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_21260 IPR012094 tRNA(Ile)-lysidine synthase VagYM4_21270 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal VagYM4_21270 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_21270 IPR001095 Acetyl-CoA carboxylase, alpha subunit VagYM4_21280 IPR016195 Polymerase/histidinol phosphatase-like VagYM4_21280 IPR004013 PHP domain VagYM4_21280 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain VagYM4_21280 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type VagYM4_21280 IPR004805 DNA polymerase III, alpha subunit VagYM4_21280 IPR029460 DNA polymerase, helix-hairpin-helix motif VagYM4_21280 IPR040982 DNA polymerase III alpha subunit finger domain VagYM4_21280 IPR003141 Polymerase/histidinol phosphatase, N-terminal VagYM4_21280 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain VagYM4_21290 IPR024567 Ribonuclease HII/HIII domain VagYM4_21290 IPR012337 Ribonuclease H-like superfamily VagYM4_21290 IPR036397 Ribonuclease H superfamily VagYM4_21290 IPR001352 Ribonuclease HII/HIII VagYM4_21290 IPR022898 Ribonuclease HII VagYM4_21300 IPR003835 Glycosyl transferase, family 19 VagYM4_21310 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal VagYM4_21310 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily VagYM4_21310 IPR001451 Hexapeptide repeat VagYM4_21310 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase VagYM4_21310 IPR011004 Trimeric LpxA-like superfamily VagYM4_21320 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ VagYM4_21320 IPR029069 HotDog domain superfamily VagYM4_21320 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ VagYM4_21330 IPR001451 Hexapeptide repeat VagYM4_21330 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD VagYM4_21330 IPR011004 Trimeric LpxA-like superfamily VagYM4_21330 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region VagYM4_21340 IPR005632 Chaperone protein Skp VagYM4_21340 IPR024930 Skp domain superfamily VagYM4_21350 IPR000184 Bacterial surface antigen (D15) VagYM4_21350 IPR010827 POTRA domain, BamA/TamA-like VagYM4_21350 IPR039910 Surface antigen D15-like VagYM4_21350 IPR023707 Outer membrane protein assembly factor BamA VagYM4_21350 IPR034746 POTRA domain VagYM4_21360 IPR001478 PDZ domain VagYM4_21360 IPR041489 PDZ domain 6 VagYM4_21360 IPR008915 Peptidase M50 VagYM4_21360 IPR036034 PDZ superfamily VagYM4_21360 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase VagYM4_21370 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal VagYM4_21370 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase VagYM4_21370 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal VagYM4_21370 IPR026877 DXP reductoisomerase C-terminal domain VagYM4_21370 IPR036291 NAD(P)-binding domain superfamily VagYM4_21370 IPR036169 DXP reductoisomerase, C-terminal domain superfamily VagYM4_21380 IPR000374 Phosphatidate cytidylyltransferase VagYM4_21390 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site VagYM4_21390 IPR001441 Decaprenyl diphosphate synthase-like VagYM4_21390 IPR036424 Decaprenyl diphosphate synthase-like superfamily VagYM4_21400 IPR002661 Ribosome recycling factor VagYM4_21400 IPR023584 Ribosome recycling factor domain VagYM4_21400 IPR036191 RRF superfamily VagYM4_21410 IPR015963 Uridylate kinase, bacteria VagYM4_21410 IPR011817 Uridylate kinase VagYM4_21410 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_21410 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_21420 IPR036402 Elongation factor Ts, dimerisation domain superfamily VagYM4_21420 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation VagYM4_21420 IPR018101 Translation elongation factor Ts, conserved site VagYM4_21420 IPR009060 UBA-like superfamily VagYM4_21420 IPR001816 Translation elongation factor EFTs/EF1B VagYM4_21430 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily VagYM4_21430 IPR001865 Ribosomal protein S2 VagYM4_21430 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid VagYM4_21430 IPR018130 Ribosomal protein S2, conserved site VagYM4_21440 IPR000994 Peptidase M24 VagYM4_21440 IPR001714 Peptidase M24, methionine aminopeptidase VagYM4_21440 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 VagYM4_21440 IPR036005 Creatinase/aminopeptidase-like VagYM4_21450 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme VagYM4_21450 IPR002912 ACT domain VagYM4_21450 IPR003607 HD/PDEase domain VagYM4_21450 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase VagYM4_21450 IPR006674 HD domain VagYM4_21450 IPR002934 Polymerase, nucleotidyl transferase domain VagYM4_21460 IPR020911 Uncharacterised protein family UPF0325 VagYM4_21470 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_21470 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site VagYM4_21470 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_21480 IPR023376 YqcC-like domain VagYM4_21480 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_21480 IPR036814 YqcC-like superfamily VagYM4_21480 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site VagYM4_21480 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_21530 IPR003791 Protein of unknown function UPF0178 VagYM4_21540 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM4_21540 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal VagYM4_21540 IPR016039 Thiolase-like VagYM4_21540 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 VagYM4_21550 IPR036291 NAD(P)-binding domain superfamily VagYM4_21550 IPR001509 NAD-dependent epimerase/dehydratase VagYM4_21600 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT VagYM4_21600 IPR011540 AbgT, Proteobacteria VagYM4_21610 IPR034704 L28p-like VagYM4_21610 IPR002150 Ribosomal protein L31 VagYM4_21610 IPR027493 Ribosomal protein L31 type B VagYM4_21610 IPR042105 Ribosomal protein L31 superfamily VagYM4_21620 IPR040372 YaeB-like VagYM4_21620 IPR036413 YaeB-like superfamily VagYM4_21620 IPR041369 TrmO, C-terminal VagYM4_21620 IPR036414 YaeB, N-terminal domain superfamily VagYM4_21620 IPR023370 TrmO-like, N-terminal domain VagYM4_21620 IPR023368 Uncharacterised protein family UPF0066, conserved site VagYM4_21630 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily VagYM4_21630 IPR033730 Prokaryote proline-tRNA ligase core domain VagYM4_21630 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 VagYM4_21630 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type VagYM4_21630 IPR002316 Proline-tRNA ligase, class IIa VagYM4_21630 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain VagYM4_21630 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_21630 IPR004154 Anticodon-binding VagYM4_21630 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) VagYM4_21630 IPR036621 Anticodon-binding domain superfamily VagYM4_21650 IPR009624 Uncharacterised protein family UPF0253 VagYM4_21670 IPR037272 Sodium:neurotransmitter symporter superfamily VagYM4_21670 IPR000175 Sodium:neurotransmitter symporter VagYM4_21680 IPR013783 Immunoglobulin-like fold VagYM4_21680 IPR017853 Glycoside hydrolase superfamily VagYM4_21680 IPR001579 Glycoside hydrolase, chitinase active site VagYM4_21680 IPR008979 Galactose-binding-like domain superfamily VagYM4_21680 IPR036116 Fibronectin type III superfamily VagYM4_21680 IPR001223 Glycoside hydrolase family 18, catalytic domain VagYM4_21680 IPR011583 Chitinase II VagYM4_21680 IPR003305 Carbohydrate-binding, CenC-like VagYM4_21680 IPR003961 Fibronectin type III VagYM4_21700 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily VagYM4_21700 IPR023459 Transcription elongation factor GreA/GreB family VagYM4_21700 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal VagYM4_21700 IPR028624 Transcription elongation factor GreA/GreB VagYM4_21700 IPR018151 Transcription elongation factor, GreA/GreB, conserved site VagYM4_21700 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily VagYM4_21700 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal VagYM4_21700 IPR006359 Transcription elongation factor GreA VagYM4_21710 IPR010997 HRDC-like superfamily VagYM4_21710 IPR001650 Helicase, C-terminal VagYM4_21710 IPR002121 HRDC domain VagYM4_21710 IPR018982 RQC domain VagYM4_21710 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_21710 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial VagYM4_21710 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_21710 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain VagYM4_21710 IPR004589 DNA helicase, ATP-dependent, RecQ type VagYM4_21710 IPR011545 DEAD/DEAH box helicase domain VagYM4_21710 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_21720 IPR036775 DNA polymerase, Y-family, little finger domain superfamily VagYM4_21720 IPR017961 DNA polymerase, Y-family, little finger domain VagYM4_21720 IPR022880 DNA polymerase IV VagYM4_21720 IPR024728 DNA polymerase type-Y, HhH motif VagYM4_21720 IPR001126 UmuC domain VagYM4_21750 IPR003374 ApbE-like superfamily VagYM4_21750 IPR024932 Flavin transferase ApbE VagYM4_21750 IPR042159 Flavin-trafficking protein ApbE VagYM4_21760 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VagYM4_21760 IPR012675 Beta-grasp domain superfamily VagYM4_21760 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain VagYM4_21760 IPR001433 Oxidoreductase FAD/NAD(P)-binding VagYM4_21760 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_21760 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_21760 IPR017927 FAD-binding domain, ferredoxin reductase-type VagYM4_21760 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase VagYM4_21760 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F VagYM4_21760 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_21770 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E VagYM4_21770 IPR003667 NqrDE/RnfAE VagYM4_21780 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D VagYM4_21780 IPR003667 NqrDE/RnfAE VagYM4_21790 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C VagYM4_21790 IPR007329 FMN-binding VagYM4_21800 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B VagYM4_21800 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD VagYM4_21810 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain VagYM4_21810 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A VagYM4_21820 IPR002634 BolA protein VagYM4_21820 IPR036065 BolA-like superfamily VagYM4_21830 IPR007848 Methyltransferase small domain VagYM4_21830 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_21830 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD VagYM4_21840 IPR012640 Membrane lipoprotein, lipid attachment site VagYM4_21840 IPR005619 Uncharacterised protein family, YajG VagYM4_21850 IPR029000 Cyclophilin-like domain superfamily VagYM4_21850 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain VagYM4_21850 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site VagYM4_21860 IPR036259 MFS transporter superfamily VagYM4_21860 IPR020846 Major facilitator superfamily domain VagYM4_21860 IPR011701 Major facilitator superfamily VagYM4_21860 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 VagYM4_21880 IPR039425 RNA polymerase sigma-70 like VagYM4_21880 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_21880 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_21880 IPR007630 RNA polymerase sigma-70 region 4 VagYM4_21880 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_21880 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_21880 IPR014284 RNA polymerase sigma-70 like domain VagYM4_21910 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like VagYM4_21910 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily VagYM4_21920 IPR013332 Ketopantoate reductase, N-terminal domain VagYM4_21920 IPR013752 Ketopantoate reductase, C-terminal domain VagYM4_21920 IPR003710 Ketopantoate reductase ApbA/PanE VagYM4_21920 IPR013328 6-phosphogluconate dehydrogenase, domain 2 VagYM4_21920 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_21920 IPR036291 NAD(P)-binding domain superfamily VagYM4_21930 IPR029062 Class I glutamine amidotransferase-like VagYM4_21930 IPR002818 DJ-1/PfpI VagYM4_21930 IPR006287 Protein/nucleic acid deglycase DJ-1 VagYM4_21940 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_21940 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_21940 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_21940 IPR016454 Cysteine desulfurase VagYM4_21940 IPR010970 Cysteine desulfurase, SufS VagYM4_21940 IPR000192 Aminotransferase class V domain VagYM4_21940 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA VagYM4_21950 IPR000160 GGDEF domain VagYM4_21950 IPR029787 Nucleotide cyclase VagYM4_21950 IPR033424 Membrane-associated sensor domain VagYM4_21970 IPR003808 Fe-S metabolism associated domain, SufE-like VagYM4_21970 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE VagYM4_21980 IPR035985 Ubiquitin-activating enzyme VagYM4_21980 IPR000594 THIF-type NAD/FAD binding fold VagYM4_21990 IPR034654 MltA, 3D domain VagYM4_21990 IPR026044 Membrane-bound lytic murein transglycosylase A VagYM4_21990 IPR010611 3D domain VagYM4_21990 IPR005300 Lytic transglycosylase MltA, domain B VagYM4_21990 IPR036908 RlpA-like domain superfamily VagYM4_22010 IPR010167 Amino-acid N-acetyltransferase VagYM4_22010 IPR033719 N-acetylglutamate synthase, kinase-like domain VagYM4_22010 IPR000182 GNAT domain VagYM4_22010 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_22010 IPR016181 Acyl-CoA N-acyltransferase VagYM4_22010 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_22050 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain VagYM4_22050 IPR006344 RecBCD enzyme subunit RecD VagYM4_22050 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_22050 IPR003593 AAA+ ATPase domain VagYM4_22050 IPR027785 UvrD-like helicase C-terminal domain VagYM4_22060 IPR011335 Restriction endonuclease type II-like VagYM4_22060 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type VagYM4_22060 IPR034739 UvrD/AddA helicase, N-terminal VagYM4_22060 IPR004586 RecBCD enzyme subunit RecB VagYM4_22060 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_22060 IPR011604 Exonuclease, phage-type/RecB, C-terminal VagYM4_22060 IPR000212 DNA helicase, UvrD/REP type VagYM4_22060 IPR014017 UvrD-like DNA helicase, C-terminal VagYM4_22060 IPR014016 UvrD-like helicase, ATP-binding domain VagYM4_22070 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_22070 IPR006697 RecBCD enzyme subunit RecC VagYM4_22070 IPR041500 RecC, C-terminal VagYM4_22070 IPR011335 Restriction endonuclease type II-like VagYM4_22070 IPR013986 DExx box DNA helicase domain superfamily VagYM4_22080 IPR024588 Inner membrane protein YejM, N-terminal VagYM4_22080 IPR012159 Inner membrane protein YejM VagYM4_22080 IPR000917 Sulfatase, N-terminal VagYM4_22080 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_22100 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_22100 IPR000847 Transcription regulator HTH, LysR VagYM4_22100 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_22100 IPR005119 LysR, substrate-binding VagYM4_22110 IPR038627 YebG-like superfamily VagYM4_22110 IPR009813 Uncharacterised protein family YebG VagYM4_22120 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain VagYM4_22120 IPR038361 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain superfamily VagYM4_22120 IPR011004 Trimeric LpxA-like superfamily VagYM4_22120 IPR001451 Hexapeptide repeat VagYM4_22120 IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria VagYM4_22120 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family VagYM4_22130 IPR030395 Glycerophosphodiester phosphodiesterase domain VagYM4_22130 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily VagYM4_22140 IPR000849 Sugar phosphate transporter VagYM4_22140 IPR036259 MFS transporter superfamily VagYM4_22140 IPR021159 Glycerate/sugar phosphate transporter, conserved site VagYM4_22140 IPR011701 Major facilitator superfamily VagYM4_22140 IPR005267 Glycerol-3-phosphate transporter VagYM4_22140 IPR020846 Major facilitator superfamily domain VagYM4_22150 IPR022357 Major intrinsic protein, conserved site VagYM4_22150 IPR000425 Major intrinsic protein VagYM4_22150 IPR023271 Aquaporin-like VagYM4_22160 IPR018484 Carbohydrate kinase, FGGY, N-terminal VagYM4_22160 IPR005999 Glycerol kinase VagYM4_22160 IPR018485 Carbohydrate kinase, FGGY, C-terminal VagYM4_22160 IPR000577 Carbohydrate kinase, FGGY VagYM4_22160 IPR018483 Carbohydrate kinase, FGGY, conserved site VagYM4_22170 IPR037171 NagB/RpiA transferase-like VagYM4_22170 IPR018356 Transcription regulator, HTH DeoR-type, conserved site VagYM4_22170 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_22170 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_22170 IPR014036 DeoR C-terminal sensor domain VagYM4_22170 IPR001034 DeoR-type HTH domain VagYM4_22180 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_22180 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase VagYM4_22180 IPR006076 FAD dependent oxidoreductase VagYM4_22180 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily VagYM4_22180 IPR031656 Alpha-glycerophosphate oxidase, C-terminal VagYM4_22190 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB VagYM4_22190 IPR023714 Zinc transport protein ZntB VagYM4_22220 IPR012340 Nucleic acid-binding, OB-fold VagYM4_22220 IPR002547 tRNA-binding domain VagYM4_22230 IPR028082 Periplasmic binding protein-like I VagYM4_22230 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_22230 IPR000843 LacI-type HTH domain VagYM4_22240 IPR020846 Major facilitator superfamily domain VagYM4_22240 IPR039672 Lactose permease-like VagYM4_22240 IPR018043 Sodium:galactoside symporter, conserved site VagYM4_22240 IPR001927 Sodium:galactoside symporter VagYM4_22240 IPR036259 MFS transporter superfamily VagYM4_22260 IPR000843 LacI-type HTH domain VagYM4_22260 IPR023588 Transcription regulator HTH, PurR VagYM4_22260 IPR028082 Periplasmic binding protein-like I VagYM4_22260 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_22270 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase VagYM4_22270 IPR011013 Galactose mutarotase-like domain superfamily VagYM4_22270 IPR018052 Aldose 1-epimerase, conserved site VagYM4_22270 IPR013458 Aldose 1-epimerase, bacterial VagYM4_22270 IPR015443 Aldose 1-epimerase VagYM4_22270 IPR014718 Glycoside hydrolase-type carbohydrate-binding VagYM4_22280 IPR022963 Galactokinase, bacterial VagYM4_22280 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_22280 IPR006206 Mevalonate/galactokinase VagYM4_22280 IPR006203 GHMP kinase, ATP-binding, conserved site VagYM4_22280 IPR006204 GHMP kinase N-terminal domain VagYM4_22280 IPR036554 GHMP kinase, C-terminal domain superfamily VagYM4_22280 IPR019539 Galactokinase galactose-binding domain VagYM4_22280 IPR019741 Galactokinase, conserved site VagYM4_22280 IPR000705 Galactokinase VagYM4_22280 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_22280 IPR013750 GHMP kinase, C-terminal domain VagYM4_22290 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal VagYM4_22290 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal VagYM4_22290 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site VagYM4_22290 IPR001937 Galactose-1-phosphate uridyl transferase, class I VagYM4_22290 IPR036265 HIT-like superfamily VagYM4_22300 IPR016040 NAD(P)-binding domain VagYM4_22300 IPR036291 NAD(P)-binding domain superfamily VagYM4_22300 IPR005886 UDP-glucose 4-epimerase VagYM4_22310 IPR028082 Periplasmic binding protein-like I VagYM4_22310 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_22310 IPR000843 LacI-type HTH domain VagYM4_22320 IPR004199 Beta galactosidase small chain/ domain 5 VagYM4_22320 IPR011013 Galactose mutarotase-like domain superfamily VagYM4_22320 IPR008979 Galactose-binding-like domain superfamily VagYM4_22320 IPR014718 Glycoside hydrolase-type carbohydrate-binding VagYM4_22320 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VagYM4_22320 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase VagYM4_22320 IPR006103 Glycoside hydrolase family 2, catalytic domain VagYM4_22320 IPR023230 Glycoside hydrolase, family 2, conserved site VagYM4_22320 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich VagYM4_22320 IPR006104 Glycosyl hydrolases family 2, sugar binding domain VagYM4_22320 IPR017853 Glycoside hydrolase superfamily VagYM4_22320 IPR013783 Immunoglobulin-like fold VagYM4_22320 IPR032312 Beta-galactosidase, domain 4 VagYM4_22320 IPR006101 Glycoside hydrolase, family 2 VagYM4_22320 IPR023232 Glycoside hydrolase, family 2, active site VagYM4_22330 IPR037012 YhcH/YjgK/YiaL superfamily VagYM4_22330 IPR004375 YhcH/YjgK/YiaL family VagYM4_22340 IPR002293 Amino acid/polyamine transporter I VagYM4_22350 IPR005119 LysR, substrate-binding VagYM4_22350 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_22350 IPR000847 Transcription regulator HTH, LysR VagYM4_22350 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_22410 IPR001482 Type II/IV secretion system protein VagYM4_22410 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_22410 IPR022399 Helicase/secretion neighbourhood ATPase VagYM4_22470 IPR004846 Type II/III secretion system VagYM4_22470 IPR001775 GspD/PilQ family VagYM4_22470 IPR007055 BON domain VagYM4_22470 IPR032789 Pilus formation protein, N-terminal VagYM4_22470 IPR014004 Transport-associated and nodulation domain, bacteria VagYM4_22520 IPR018060 DNA binding HTH domain, AraC-type VagYM4_22520 IPR004026 Ada DNA repair, metal-binding VagYM4_22520 IPR018062 HTH domain AraC-type, conserved site VagYM4_22520 IPR035451 Ada-like domain superfamily VagYM4_22520 IPR016220 Methylphosphotriester-DNA alkyltransferase, AdaA VagYM4_22520 IPR009057 Homeobox-like domain superfamily VagYM4_22530 IPR000873 AMP-dependent synthetase/ligase VagYM4_22530 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_22530 IPR020845 AMP-binding, conserved site VagYM4_22550 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_22550 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_22550 IPR000847 Transcription regulator HTH, LysR VagYM4_22550 IPR005119 LysR, substrate-binding VagYM4_22560 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_22560 IPR041095 Elongation Factor G, domain II VagYM4_22560 IPR035647 EF-G domain III/V-like VagYM4_22560 IPR035649 EFG, domain V VagYM4_22560 IPR009022 Elongation factor G, domain III VagYM4_22560 IPR000640 Elongation factor EFG, domain V-like VagYM4_22560 IPR031157 Tr-type G domain, conserved site VagYM4_22560 IPR005517 Translation elongation factor EFG/EF2, domain IV VagYM4_22560 IPR004540 Translation elongation factor EFG/EF2 VagYM4_22560 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_22560 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_22560 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_22560 IPR000795 Transcription factor, GTP-binding domain VagYM4_22560 IPR004161 Translation elongation factor EFTu-like, domain 2 VagYM4_22560 IPR005225 Small GTP-binding protein domain VagYM4_22570 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_22570 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_22570 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain VagYM4_22570 IPR041166 LapB, rubredoxin metal binding domain VagYM4_22570 IPR004504 DNA repair protein RadA VagYM4_22570 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_22570 IPR003593 AAA+ ATPase domain VagYM4_22590 IPR036412 HAD-like superfamily VagYM4_22590 IPR041449 Phosphoserine phosphatase, N-terminal VagYM4_22590 IPR023190 Phosphoserine phosphatase, domain 2 VagYM4_22590 IPR023214 HAD superfamily VagYM4_22610 IPR018016 Nucleoside phosphorylase, conserved site VagYM4_22610 IPR000845 Nucleoside phosphorylase domain VagYM4_22610 IPR035994 Nucleoside phosphorylase superfamily VagYM4_22610 IPR004402 Purine nucleoside phosphorylase DeoD-type VagYM4_22620 IPR006124 Metalloenzyme VagYM4_22620 IPR024052 Phosphopentomutase DeoB cap domain superfamily VagYM4_22620 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_22620 IPR010045 Phosphopentomutase VagYM4_22630 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic VagYM4_22630 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site VagYM4_22630 IPR000312 Glycosyl transferase, family 3 VagYM4_22630 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily VagYM4_22630 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal VagYM4_22630 IPR013465 Thymidine phosphorylase VagYM4_22630 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase VagYM4_22630 IPR017459 Glycosyl transferase family 3, N-terminal domain VagYM4_22630 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily VagYM4_22630 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily VagYM4_22640 IPR023649 Deoxyribose-phosphate aldolase type II VagYM4_22640 IPR002915 DeoC/FbaB/ lacD aldolase VagYM4_22640 IPR011343 Deoxyribose-phosphate aldolase VagYM4_22640 IPR013785 Aldolase-type TIM barrel VagYM4_22650 IPR011657 Concentrative nucleoside transporter C-terminal domain VagYM4_22650 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial VagYM4_22650 IPR002668 Concentrative nucleoside transporter N-terminal domain VagYM4_22650 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain VagYM4_22650 IPR008276 Concentrative nucleoside transporter VagYM4_22660 IPR001130 TatD family VagYM4_22660 IPR018228 Deoxyribonuclease, TatD-related, conserved site VagYM4_22660 IPR032466 Metal-dependent hydrolase VagYM4_22680 IPR005225 Small GTP-binding protein domain VagYM4_22680 IPR041732 Peptide chain release factor 3, GTP-binding domain VagYM4_22680 IPR000795 Transcription factor, GTP-binding domain VagYM4_22680 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_22680 IPR035647 EF-G domain III/V-like VagYM4_22680 IPR004161 Translation elongation factor EFTu-like, domain 2 VagYM4_22680 IPR031157 Tr-type G domain, conserved site VagYM4_22680 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_22680 IPR004548 Peptide chain release factor 3 VagYM4_22680 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily VagYM4_22680 IPR032090 Peptide chain release factor 3, C-terminal VagYM4_22690 IPR015927 Peptidase S24/S26A/S26B/S26C VagYM4_22690 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_22690 IPR039418 LexA-like VagYM4_22690 IPR036286 LexA/Signal peptidase-like superfamily VagYM4_22690 IPR001387 Cro/C1-type helix-turn-helix domain VagYM4_22780 IPR010927 Type IV conjugative transfer system protein TraH VagYM4_22800 IPR009057 Homeobox-like domain superfamily VagYM4_22800 IPR001598 Transposase, IS30, conserved site VagYM4_22800 IPR001584 Integrase, catalytic core VagYM4_22800 IPR036397 Ribonuclease H superfamily VagYM4_22800 IPR012337 Ribonuclease H-like superfamily VagYM4_22820 IPR001789 Signal transduction response regulator, receiver domain VagYM4_22820 IPR029787 Nucleotide cyclase VagYM4_22820 IPR000160 GGDEF domain VagYM4_22820 IPR011006 CheY-like superfamily VagYM4_22830 IPR013785 Aldolase-type TIM barrel VagYM4_22830 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype VagYM4_22830 IPR000771 Fructose-bisphosphate aldolase, class-II VagYM4_22870 IPR025161 Putative transposase IS4/IS5 family VagYM4_22880 IPR001915 Peptidase M48 VagYM4_22880 IPR022919 Peptidase M48, protease HtpX, putative VagYM4_22890 IPR022835 Chaperone modulatory protein CbpM VagYM4_22900 IPR036869 Chaperone J-domain superfamily VagYM4_22900 IPR002939 Chaperone DnaJ, C-terminal VagYM4_22900 IPR023859 DNA-binding protein, curved-DNA VagYM4_22900 IPR001623 DnaJ domain VagYM4_22900 IPR008971 HSP40/DnaJ peptide-binding VagYM4_22900 IPR018253 DnaJ domain, conserved site VagYM4_22910 IPR003593 AAA+ ATPase domain VagYM4_22910 IPR003959 ATPase, AAA-type, core VagYM4_22910 IPR017730 Chaperonin ClpB VagYM4_22910 IPR019489 Clp ATPase, C-terminal VagYM4_22910 IPR036628 Clp, N-terminal domain superfamily VagYM4_22910 IPR001270 ClpA/B family VagYM4_22910 IPR018368 ClpA/B, conserved site 1 VagYM4_22910 IPR004176 Clp, N-terminal VagYM4_22910 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_22910 IPR028299 ClpA/B, conserved site 2 VagYM4_22910 IPR041546 ClpA/ClpB, AAA lid domain VagYM4_22940 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily VagYM4_22940 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily VagYM4_22940 IPR013126 Heat shock protein 70 family VagYM4_22940 IPR018181 Heat shock protein 70, conserved site VagYM4_22940 IPR012725 Chaperone DnaK VagYM4_22950 IPR009012 GrpE nucleotide exchange factor, head VagYM4_22950 IPR000740 GrpE nucleotide exchange factor VagYM4_22950 IPR013805 GrpE nucleotide exchange factor, coiled-coil VagYM4_22970 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_22970 IPR006153 Cation/H+ exchanger VagYM4_22970 IPR038770 Sodium/solute symporter superfamily VagYM4_22970 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_22970 IPR003148 Regulator of K+ conductance, N-terminal VagYM4_22970 IPR036291 NAD(P)-binding domain superfamily VagYM4_22980 IPR031107 Small heat shock protein HSP20 VagYM4_22980 IPR002068 Alpha crystallin/Hsp20 domain VagYM4_22980 IPR008978 HSP20-like chaperone VagYM4_22990 IPR002068 Alpha crystallin/Hsp20 domain VagYM4_22990 IPR008978 HSP20-like chaperone VagYM4_23010 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_23010 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_23010 IPR001789 Signal transduction response regulator, receiver domain VagYM4_23010 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_23010 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_23010 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_23010 IPR009057 Homeobox-like domain superfamily VagYM4_23010 IPR002197 DNA binding HTH domain, Fis-type VagYM4_23010 IPR003593 AAA+ ATPase domain VagYM4_23010 IPR011006 CheY-like superfamily VagYM4_23110 IPR020891 Uncharacterised protein family UPF0758, conserved site VagYM4_23110 IPR001405 Uncharacterised protein family UPF0758 VagYM4_23110 IPR025657 RadC-like JAB domain VagYM4_23110 IPR037518 MPN domain VagYM4_23120 IPR036465 von Willebrand factor A-like domain superfamily VagYM4_23120 IPR002035 von Willebrand factor, type A VagYM4_23160 IPR001270 ClpA/B family VagYM4_23160 IPR003593 AAA+ ATPase domain VagYM4_23160 IPR013615 CbbQ/NirQ/NorQ, C-terminal VagYM4_23160 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_23160 IPR011704 ATPase, dynein-related, AAA domain VagYM4_23200 IPR012340 Nucleic acid-binding, OB-fold VagYM4_23200 IPR011344 Single-stranded DNA-binding protein VagYM4_23200 IPR000424 Primosome PriB/single-strand DNA-binding VagYM4_23230 IPR012337 Ribonuclease H-like superfamily VagYM4_23230 IPR024473 Transposase, IS4, N-terminal VagYM4_23230 IPR002559 Transposase, IS4-like VagYM4_23240 IPR024473 Transposase, IS4, N-terminal VagYM4_23240 IPR002559 Transposase, IS4-like VagYM4_23240 IPR012337 Ribonuclease H-like superfamily VagYM4_23260 IPR000477 Reverse transcriptase domain VagYM4_23280 IPR004837 Sodium/calcium exchanger membrane region VagYM4_23280 IPR004481 Sodium/potassium/calcium exchanger VagYM4_23290 IPR006686 Mechanosensitive ion channel MscS, conserved site VagYM4_23290 IPR006685 Mechanosensitive ion channel MscS VagYM4_23290 IPR010920 LSM domain superfamily VagYM4_23290 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 VagYM4_23290 IPR008910 Conserved TM helix VagYM4_23290 IPR023408 Mechanosensitive ion channel MscS domain superfamily VagYM4_23290 IPR011066 Mechanosensitive ion channel MscS, C-terminal VagYM4_23300 IPR000060 BCCT transporter family VagYM4_23360 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN VagYM4_23370 IPR009649 TraU VagYM4_23390 IPR000223 Peptidase S26A, signal peptidase I VagYM4_23390 IPR019758 Peptidase S26A, signal peptidase I, conserved site VagYM4_23390 IPR036286 LexA/Signal peptidase-like superfamily VagYM4_23390 IPR019757 Peptidase S26A, signal peptidase I, lysine active site VagYM4_23390 IPR019533 Peptidase S26 VagYM4_23390 IPR019756 Peptidase S26A, signal peptidase I, serine active site VagYM4_23420 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily VagYM4_23420 IPR033954 Disulphide bond isomerase, DsbC/G VagYM4_23420 IPR012336 Thioredoxin-like fold VagYM4_23420 IPR036249 Thioredoxin-like superfamily VagYM4_23420 IPR017937 Thioredoxin, conserved site VagYM4_23420 IPR013766 Thioredoxin domain VagYM4_23420 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal VagYM4_23590 IPR040980 SWI2/SNF2 ATPase VagYM4_23590 IPR022625 Type-1 restriction enzyme R protein, C-terminal VagYM4_23590 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal VagYM4_23590 IPR004473 Restriction endonuclease, type I, HsdR VagYM4_23590 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_23590 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_23600 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_23610 IPR000055 Restriction endonuclease, type I, HsdS VagYM4_23620 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_23620 IPR004546 Restriction endonuclease, type I, HsdM VagYM4_23620 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_23620 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily VagYM4_23620 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain VagYM4_23620 IPR003356 DNA methylase, adenine-specific VagYM4_23650 IPR012337 Ribonuclease H-like superfamily VagYM4_23650 IPR013520 Exonuclease, RNase T/DNA polymerase III VagYM4_23650 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain VagYM4_23650 IPR029460 DNA polymerase, helix-hairpin-helix motif VagYM4_23650 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type VagYM4_23650 IPR024754 DNA polymerase III polC-like, N-terminal domain II VagYM4_23650 IPR004013 PHP domain VagYM4_23650 IPR003141 Polymerase/histidinol phosphatase, N-terminal VagYM4_23650 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain VagYM4_23650 IPR036397 Ribonuclease H superfamily VagYM4_23650 IPR040982 DNA polymerase III alpha subunit finger domain VagYM4_23660 IPR015927 Peptidase S24/S26A/S26B/S26C VagYM4_23660 IPR006197 Peptidase S24, LexA-like VagYM4_23660 IPR036286 LexA/Signal peptidase-like superfamily VagYM4_23660 IPR039418 LexA-like VagYM4_23670 IPR025188 Domain of unknown function DUF4113 VagYM4_23670 IPR001126 UmuC domain VagYM4_23670 IPR017961 DNA polymerase, Y-family, little finger domain VagYM4_23670 IPR036775 DNA polymerase, Y-family, little finger domain superfamily VagYM4_23680 IPR036775 DNA polymerase, Y-family, little finger domain superfamily VagYM4_23680 IPR017961 DNA polymerase, Y-family, little finger domain VagYM4_23680 IPR001126 UmuC domain VagYM4_23680 IPR025188 Domain of unknown function DUF4113 VagYM4_23780 IPR000182 GNAT domain VagYM4_23780 IPR016181 Acyl-CoA N-acyltransferase VagYM4_23790 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT VagYM4_23790 IPR036527 SCP2 sterol-binding domain superfamily VagYM4_23790 IPR003033 SCP2 sterol-binding domain VagYM4_23790 IPR039543 Lipid-binding protein POX18/YhbT/NSL-TP1 VagYM4_23800 IPR001633 EAL domain VagYM4_23800 IPR000160 GGDEF domain VagYM4_23800 IPR005330 MHYT domain VagYM4_23800 IPR035919 EAL domain superfamily VagYM4_23800 IPR029787 Nucleotide cyclase VagYM4_23810 IPR001539 Peptidase U32 VagYM4_23810 IPR036206 Thiamin phosphate synthase superfamily VagYM4_23820 IPR001539 Peptidase U32 VagYM4_23830 IPR002528 Multi antimicrobial extrusion protein VagYM4_23850 IPR019734 Tetratricopeptide repeat VagYM4_23850 IPR013105 Tetratricopeptide repeat 2 VagYM4_23850 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_23850 IPR013026 Tetratricopeptide repeat-containing domain VagYM4_23850 IPR023605 Lipoprotein NlpI VagYM4_23860 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_23860 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain VagYM4_23860 IPR001247 Exoribonuclease, phosphorolytic domain 1 VagYM4_23860 IPR012162 Polyribonucleotide nucleotidyltransferase VagYM4_23860 IPR012340 Nucleic acid-binding, OB-fold VagYM4_23860 IPR036612 K Homology domain, type 1 superfamily VagYM4_23860 IPR004088 K Homology domain, type 1 VagYM4_23860 IPR004087 K Homology domain VagYM4_23860 IPR036345 Exoribonuclease, PH domain 2 superfamily VagYM4_23860 IPR015847 Exoribonuclease, phosphorolytic domain 2 VagYM4_23860 IPR022967 RNA-binding domain, S1 VagYM4_23860 IPR027408 PNPase/RNase PH domain superfamily VagYM4_23860 IPR003029 S1 domain VagYM4_23870 IPR009068 S15/NS1, RNA-binding VagYM4_23870 IPR005290 Ribosomal protein S15, bacterial-type VagYM4_23870 IPR000589 Ribosomal protein S15 VagYM4_23880 IPR015947 PUA-like superfamily VagYM4_23880 IPR036974 PUA domain superfamily VagYM4_23880 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_23880 IPR032819 tRNA pseudouridylate synthase B, C-terminal VagYM4_23880 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal VagYM4_23880 IPR002501 Pseudouridine synthase II, N-terminal VagYM4_23880 IPR014780 tRNA pseudouridine synthase II, TruB VagYM4_23890 IPR020053 Ribosome-binding factor A, conserved site VagYM4_23890 IPR000238 Ribosome-binding factor A VagYM4_23890 IPR015946 K homology domain-like, alpha/beta VagYM4_23890 IPR023799 Ribosome-binding factor A domain superfamily VagYM4_23900 IPR015760 Translation initiation factor IF- 2 VagYM4_23900 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_23900 IPR000178 Translation initiation factor aIF-2, bacterial-like VagYM4_23900 IPR000795 Transcription factor, GTP-binding domain VagYM4_23900 IPR006847 Translation initiation factor IF-2, N-terminal VagYM4_23900 IPR023115 Translation initiation factor IF- 2, domain 3 VagYM4_23900 IPR036925 Translation initiation factor IF-2, domain 3 superfamily VagYM4_23900 IPR005225 Small GTP-binding protein domain VagYM4_23900 IPR009061 Putative DNA-binding domain superfamily VagYM4_23900 IPR013575 Initiation factor 2 associated domain, bacterial VagYM4_23900 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_23910 IPR010213 Transcription termination factor NusA VagYM4_23910 IPR010214 Transcription termination factor NusA, C-terminal duplication VagYM4_23910 IPR013735 Transcription factor NusA, N-terminal VagYM4_23910 IPR003029 S1 domain VagYM4_23910 IPR022967 RNA-binding domain, S1 VagYM4_23910 IPR036555 NusA, N-terminal domain superfamily VagYM4_23910 IPR030842 Transcription termination/antitermination protein NusA, bacterial VagYM4_23910 IPR012340 Nucleic acid-binding, OB-fold VagYM4_23910 IPR009019 K homology domain superfamily, prokaryotic type VagYM4_23910 IPR025249 KH domain, NusA-like VagYM4_23910 IPR015946 K homology domain-like, alpha/beta VagYM4_23910 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical VagYM4_23920 IPR028998 Ribosome maturation factor RimP, C-terminal VagYM4_23920 IPR003728 Ribosome maturation factor RimP VagYM4_23920 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily VagYM4_23920 IPR028989 Ribosome maturation factor RimP, N-terminal VagYM4_23920 IPR035956 RimP, N-terminal domain superfamily VagYM4_23930 IPR004692 Preprotein translocase SecG subunit VagYM4_23940 IPR005841 Alpha-D-phosphohexomutase superfamily VagYM4_23940 IPR016066 Alpha-D-phosphohexomutase, conserved site VagYM4_23940 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily VagYM4_23940 IPR005843 Alpha-D-phosphohexomutase, C-terminal VagYM4_23940 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III VagYM4_23940 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II VagYM4_23940 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III VagYM4_23940 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I VagYM4_23940 IPR006352 Phosphoglucosamine mutase, bacterial type VagYM4_23950 IPR011005 Dihydropteroate synthase-like VagYM4_23950 IPR000489 Pterin-binding domain VagYM4_23950 IPR006390 Dihydropteroate synthase VagYM4_23960 IPR011546 Peptidase M41, FtsH extracellular VagYM4_23960 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_23960 IPR005936 Peptidase, FtsH VagYM4_23960 IPR003960 ATPase, AAA-type, conserved site VagYM4_23960 IPR041569 AAA ATPase, AAA+ lid domain VagYM4_23960 IPR003593 AAA+ ATPase domain VagYM4_23960 IPR037219 Peptidase M41-like VagYM4_23960 IPR000642 Peptidase M41 VagYM4_23960 IPR003959 ATPase, AAA-type, core VagYM4_23970 IPR002877 Ribosomal RNA methyltransferase FtsJ domain VagYM4_23970 IPR015507 Ribosomal RNA large subunit methyltransferase E VagYM4_23970 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_23980 IPR001890 RNA-binding, CRM domain VagYM4_23980 IPR017924 RNA-binding protein YhbY VagYM4_23980 IPR035920 YhbY-like superfamily VagYM4_23990 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily VagYM4_23990 IPR018151 Transcription elongation factor, GreA/GreB, conserved site VagYM4_23990 IPR006359 Transcription elongation factor GreA VagYM4_23990 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily VagYM4_23990 IPR028624 Transcription elongation factor GreA/GreB VagYM4_23990 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal VagYM4_23990 IPR023459 Transcription elongation factor GreA/GreB family VagYM4_23990 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal VagYM4_24000 IPR033900 Porin domain, Gram-negative type VagYM4_24000 IPR023614 Porin domain superfamily VagYM4_24010 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_24010 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C VagYM4_24030 IPR002942 RNA-binding S4 domain VagYM4_24030 IPR036986 RNA-binding S4 domain superfamily VagYM4_24030 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 VagYM4_24030 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_24030 IPR002305 Aminoacyl-tRNA synthetase, class Ic VagYM4_24030 IPR024088 Tyrosine-tRNA ligase, bacterial-type VagYM4_24030 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_24030 IPR002307 Tyrosine-tRNA ligase VagYM4_24040 IPR011055 Duplicated hybrid motif VagYM4_24040 IPR018392 LysM domain VagYM4_24040 IPR013731 Opacity-associated protein A, N-terminal VagYM4_24040 IPR016047 Peptidase M23 VagYM4_24050 IPR022831 Multidrug resistance protein MdtB VagYM4_24050 IPR001036 Acriflavin resistance protein VagYM4_24050 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_24070 IPR016092 FeS cluster insertion protein VagYM4_24070 IPR017870 FeS cluster insertion, C-terminal, conserved site VagYM4_24070 IPR000361 FeS cluster biogenesis VagYM4_24070 IPR035903 HesB-like domain superfamily VagYM4_24070 IPR023063 FeS cluster insertion protein ErpA VagYM4_24080 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_24080 IPR005814 Aminotransferase class-III VagYM4_24080 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_24080 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_24080 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase VagYM4_24090 IPR002549 Transmembrane protein TqsA-like VagYM4_24100 IPR013675 Methyltransferase small, N-terminal VagYM4_24100 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_24100 IPR023543 rRNA small subunit methyltransferase C VagYM4_24100 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_24100 IPR007848 Methyltransferase small domain VagYM4_24110 IPR005467 Histidine kinase domain VagYM4_24110 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_24110 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_24110 IPR015387 LuxQ, periplasmic VagYM4_24110 IPR035965 PAS domain superfamily VagYM4_24110 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_24110 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_24110 IPR001789 Signal transduction response regulator, receiver domain VagYM4_24110 IPR011006 CheY-like superfamily VagYM4_24110 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_24110 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_24120 IPR023765 Solute-binding protein family 5, conserved site VagYM4_24120 IPR030678 Peptide/nickel binding protein, MppA-type VagYM4_24120 IPR000914 Solute-binding protein family 5 domain VagYM4_24120 IPR039424 Solute-binding protein family 5 VagYM4_24130 IPR035906 MetI-like superfamily VagYM4_24130 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_24150 IPR017871 ABC transporter, conserved site VagYM4_24150 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24150 IPR003593 AAA+ ATPase domain VagYM4_24150 IPR003439 ABC transporter-like VagYM4_24150 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_24160 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_24160 IPR017871 ABC transporter, conserved site VagYM4_24160 IPR003439 ABC transporter-like VagYM4_24160 IPR003593 AAA+ ATPase domain VagYM4_24160 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24180 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type VagYM4_24190 IPR029018 Beta-hexosaminidase-like, domain 2 VagYM4_24190 IPR015883 Glycoside hydrolase family 20, catalytic domain VagYM4_24190 IPR017853 Glycoside hydrolase superfamily VagYM4_24190 IPR015882 Beta-hexosaminidase, bacterial type, N-terminal VagYM4_24190 IPR025705 Beta-hexosaminidase VagYM4_24200 IPR009342 Putative carbohydrate binding domain VagYM4_24200 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily VagYM4_24200 IPR033432 Glycosyl hydrolase 36, catalytic domain VagYM4_24200 IPR037828 N,N'-diacetylchitobiose phosphorylase, N-terminal VagYM4_24200 IPR010383 Glycosyl hydrolase 94 VagYM4_24200 IPR008928 Six-hairpin glycosidase superfamily VagYM4_24200 IPR012341 Six-hairpin glycosidase-like superfamily VagYM4_24200 IPR011013 Galactose mutarotase-like domain superfamily VagYM4_24210 IPR005843 Alpha-D-phosphohexomutase, C-terminal VagYM4_24210 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily VagYM4_24210 IPR005841 Alpha-D-phosphohexomutase superfamily VagYM4_24210 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III VagYM4_24210 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II VagYM4_24210 IPR016066 Alpha-D-phosphohexomutase, conserved site VagYM4_24210 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I VagYM4_24210 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III VagYM4_24220 IPR003593 AAA+ ATPase domain VagYM4_24220 IPR017871 ABC transporter, conserved site VagYM4_24220 IPR015853 ABC transporter, ferric cation import, FbpC VagYM4_24220 IPR008995 Molybdate/tungstate binding, C-terminal VagYM4_24220 IPR013611 Transport-associated OB, type 2 VagYM4_24220 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24220 IPR003439 ABC transporter-like VagYM4_24240 IPR026045 Ferric binding protein VagYM4_24240 IPR006059 Bacterial extracellular solute-binding protein VagYM4_24250 IPR024041 Ammonium transporter AmtB-like domain VagYM4_24250 IPR018047 Ammonium transporter, conserved site VagYM4_24250 IPR001905 Ammonium transporter VagYM4_24250 IPR029020 Ammonium/urea transporter VagYM4_24260 IPR017918 Nitrogen regulatory protein PII, conserved site VagYM4_24260 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal VagYM4_24260 IPR002332 Nitrogen regulatory protein P-II, urydylation site VagYM4_24260 IPR011322 Nitrogen regulatory PII-like, alpha/beta VagYM4_24260 IPR002187 Nitrogen regulatory protein PII VagYM4_24270 IPR008249 Uncharacterised protein family UPF0231 VagYM4_24280 IPR015932 Aconitase, domain 2 VagYM4_24280 IPR015929 Aconitase B, swivel VagYM4_24280 IPR036288 Aconitase B, HEAT-like domain superfamily VagYM4_24280 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel VagYM4_24280 IPR015933 Aconitase B, HEAT-like domain VagYM4_24280 IPR004406 Aconitase B VagYM4_24280 IPR018136 Aconitase family, 4Fe-4S cluster binding site VagYM4_24280 IPR036008 Aconitase, iron-sulfur domain VagYM4_24280 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain VagYM4_24280 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 VagYM4_24290 IPR001423 Lysophospholipase patatin, conserved site VagYM4_24290 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VagYM4_24290 IPR002641 Patatin-like phospholipase domain VagYM4_24300 IPR036950 Penicillin binding protein transglycosylase domain VagYM4_24300 IPR001460 Penicillin-binding protein, transpeptidase VagYM4_24300 IPR028166 Bifunctional transglycosylase second domain VagYM4_24300 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_24300 IPR023346 Lysozyme-like domain superfamily VagYM4_24300 IPR011813 Penicillin-binding protein 1B VagYM4_24300 IPR001264 Glycosyl transferase, family 51 VagYM4_24310 IPR011545 DEAD/DEAH box helicase domain VagYM4_24310 IPR007502 Helicase-associated domain VagYM4_24310 IPR010225 ATP-dependent helicase HrpB VagYM4_24310 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal VagYM4_24310 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24310 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_24310 IPR001650 Helicase, C-terminal VagYM4_24320 IPR041465 SfsA, N-terminal OB domain VagYM4_24320 IPR040452 Sugar fermentation stimulation protein, C-terminal VagYM4_24320 IPR005224 Sugar fermentation stimulation protein VagYM4_24330 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria VagYM4_24330 IPR020458 Zinc finger, DksA/TraR C4-type conserved site VagYM4_24330 IPR000962 Zinc finger, DksA/TraR C4-type VagYM4_24330 IPR037187 DksA, N-terminal domain superfamily VagYM4_24330 IPR012784 RNA polymerase-binding transcription factor DksA VagYM4_24340 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_24340 IPR022380 Glutamyl-Q tRNA(Asp) synthetase VagYM4_24340 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain VagYM4_24340 IPR000924 Glutamyl/glutaminyl-tRNA synthetase VagYM4_24350 IPR010206 Poly(A) polymerase I VagYM4_24350 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain VagYM4_24350 IPR025866 Polymerase A arginine-rich C-terminal domain VagYM4_24350 IPR002646 Poly A polymerase, head domain VagYM4_24360 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily VagYM4_24360 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK VagYM4_24370 IPR003700 Ketopantoate hydroxymethyltransferase VagYM4_24370 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_24370 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_24380 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain VagYM4_24380 IPR003721 Pantoate-beta-alanine ligase VagYM4_24380 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_24380 IPR004821 Cytidyltransferase-like domain VagYM4_24390 IPR004960 Bacterial lipid A biosynthesis acyltransferase VagYM4_24390 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase VagYM4_24400 IPR013525 ABC-2 type transporter VagYM4_24400 IPR000412 ABC-2 transporter VagYM4_24410 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24410 IPR017871 ABC transporter, conserved site VagYM4_24410 IPR003593 AAA+ ATPase domain VagYM4_24410 IPR003439 ABC transporter-like VagYM4_24420 IPR001902 SLC26A/SulP transporter VagYM4_24420 IPR011547 SLC26A/SulP transporter domain VagYM4_24420 IPR036513 STAS domain superfamily VagYM4_24420 IPR002645 STAS domain VagYM4_24430 IPR001765 Carbonic anhydrase VagYM4_24430 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site VagYM4_24430 IPR036874 Carbonic anhydrase superfamily VagYM4_24440 IPR005904 Hypoxanthine phosphoribosyl transferase VagYM4_24440 IPR000836 Phosphoribosyltransferase domain VagYM4_24440 IPR029057 Phosphoribosyltransferase-like VagYM4_24450 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_24450 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_24450 IPR009057 Homeobox-like domain superfamily VagYM4_24460 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_24460 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site VagYM4_24460 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I VagYM4_24460 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_24460 IPR023753 FAD/NAD(P)-binding domain VagYM4_24460 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily VagYM4_24460 IPR006258 Dihydrolipoamide dehydrogenase VagYM4_24470 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily VagYM4_24470 IPR011053 Single hybrid motif VagYM4_24470 IPR036625 E3-binding domain superfamily VagYM4_24470 IPR000089 Biotin/lipoyl attachment VagYM4_24470 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain VagYM4_24470 IPR004167 Peripheral subunit-binding domain VagYM4_24470 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site VagYM4_24470 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex VagYM4_24480 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal VagYM4_24480 IPR005474 Transketolase, N-terminal VagYM4_24480 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II VagYM4_24480 IPR029061 Thiamin diphosphate-binding fold VagYM4_24480 IPR004660 Pyruvate dehydrogenase E1 component VagYM4_24480 IPR041621 Pyruvate dehydrogenase E1 component, middle domain VagYM4_24490 IPR008920 Transcription regulator FadR/GntR, C-terminal VagYM4_24490 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_24490 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_24490 IPR000524 Transcription regulator HTH, GntR VagYM4_24490 IPR011711 GntR, C-terminal VagYM4_24500 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily VagYM4_24500 IPR002502 N-acetylmuramoyl-L-alanine amidase domain VagYM4_24510 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal VagYM4_24510 IPR013785 Aldolase-type TIM barrel VagYM4_24510 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal VagYM4_24510 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal VagYM4_24510 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD VagYM4_24510 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily VagYM4_24510 IPR004393 Nicotinate-nucleotide pyrophosphorylase VagYM4_24530 IPR013374 ATPase, type IV, pilus assembly, PilB VagYM4_24530 IPR042181 Type II secretion system, protein E, N-terminal VagYM4_24530 IPR001482 Type II/IV secretion system protein VagYM4_24530 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24530 IPR007831 General secretory system II, protein E, N-terminal VagYM4_24530 IPR037257 General secretory system II, protein E, N-terminal superfamily VagYM4_24540 IPR018076 Type II secretion system F domain VagYM4_24540 IPR003004 GspF/PilC family VagYM4_24540 IPR001992 Type II secretion system conserved site VagYM4_24540 IPR042094 Type II secretion system F domain superfamily VagYM4_24550 IPR010627 Peptidase A24A, N-terminal VagYM4_24550 IPR014032 Peptidase A24A, prepilin type IV, bacterial VagYM4_24550 IPR000045 Prepilin type IV endopeptidase, peptidase domain VagYM4_24560 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24560 IPR001977 Dephospho-CoA kinase VagYM4_24570 IPR036268 ZapD domain superfamily VagYM4_24570 IPR027462 Z ring-associated protein D, C-terminal VagYM4_24570 IPR009777 Cell division protein ZapD VagYM4_24580 IPR005584 DNA gyrase inhibitor YacG VagYM4_24580 IPR013088 Zinc finger, NHR/GATA-type VagYM4_24590 IPR001857 Ribosomal protein L19 VagYM4_24590 IPR008991 Translation protein SH3-like domain superfamily VagYM4_24590 IPR038657 Ribosomal protein L19 superfamily VagYM4_24590 IPR018257 Ribosomal protein L19, conserved site VagYM4_24600 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal VagYM4_24600 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_24600 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria VagYM4_24600 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain VagYM4_24600 IPR029028 Alpha/beta knot methyltransferases VagYM4_24610 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_24610 IPR011961 16S rRNA processing protein RimM VagYM4_24610 IPR027275 PRC-barrel domain VagYM4_24610 IPR036976 RimM, N-terminal domain superfamily VagYM4_24610 IPR002676 RimM, N-terminal VagYM4_24610 IPR011033 PRC-barrel-like superfamily VagYM4_24620 IPR023803 Ribosomal protein S16 domain superfamily VagYM4_24620 IPR020592 Ribosomal protein S16, conserved site VagYM4_24620 IPR000307 Ribosomal protein S16 VagYM4_24630 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24630 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily VagYM4_24630 IPR004125 Signal recognition particle, SRP54 subunit, M-domain VagYM4_24630 IPR013822 Signal recognition particle SRP54, helical bundle VagYM4_24630 IPR022941 Signal recognition particle, SRP54 subunit VagYM4_24630 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain VagYM4_24630 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily VagYM4_24630 IPR004780 Signal recognition particle protein VagYM4_24630 IPR003593 AAA+ ATPase domain VagYM4_24640 IPR002541 Cytochrome c assembly protein VagYM4_24650 IPR000644 CBS domain VagYM4_24650 IPR016169 FAD-binding, type PCMH, subdomain 2 VagYM4_24650 IPR005170 Transporter-associated domain VagYM4_24650 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_24650 IPR002550 CNNM, transmembrane domain VagYM4_24660 IPR003815 S-ribosylhomocysteinase (LuxS) VagYM4_24660 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like VagYM4_24660 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily VagYM4_24680 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain VagYM4_24680 IPR007370 Glutamate--cysteine ligase VagYM4_24680 IPR006334 Glutamate--cysteine ligase, monofunctional VagYM4_24690 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like VagYM4_24690 IPR007863 Peptidase M16, C-terminal VagYM4_24690 IPR011765 Peptidase M16, N-terminal VagYM4_24690 IPR001431 Peptidase M16, zinc-binding site VagYM4_24700 IPR032816 SNARE associated Golgi protein VagYM4_24720 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit VagYM4_24730 IPR001882 Biotin-binding site VagYM4_24730 IPR000089 Biotin/lipoyl attachment VagYM4_24730 IPR011053 Single hybrid motif VagYM4_24730 IPR000891 Pyruvate carboxyltransferase VagYM4_24730 IPR005776 Oxaloacetate decarboxylase, alpha subunit VagYM4_24730 IPR003379 Carboxylase, conserved domain VagYM4_24730 IPR013785 Aldolase-type TIM barrel VagYM4_24740 IPR023424 Oxaloacetate decarboxylase gamma chain, probable VagYM4_24740 IPR005899 Sodium ion-translocating decarboxylase VagYM4_24750 IPR003751 Translational regulator CsrA VagYM4_24750 IPR036107 Carbon storage regulator superfamily VagYM4_24760 IPR018042 Aspartate kinase, conserved site VagYM4_24760 IPR001341 Aspartate kinase VagYM4_24760 IPR005260 Aspartate kinase, monofunctional class VagYM4_24760 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_24760 IPR041740 Aspartokinase catalytic domain VagYM4_24760 IPR002912 ACT domain VagYM4_24760 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_24760 IPR027795 CASTOR, ACT domain VagYM4_24770 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria VagYM4_24770 IPR012947 Threonyl/alanyl tRNA synthetase, SAD VagYM4_24770 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain VagYM4_24770 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily VagYM4_24770 IPR003156 DHHA1 domain VagYM4_24770 IPR002318 Alanine-tRNA ligase, class IIc VagYM4_24770 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal VagYM4_24770 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily VagYM4_24770 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_24780 IPR003783 Regulatory protein RecX VagYM4_24780 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_24790 IPR020584 DNA recombination/repair protein RecA, conserved site VagYM4_24790 IPR003593 AAA+ ATPase domain VagYM4_24790 IPR013765 DNA recombination and repair protein RecA VagYM4_24790 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface VagYM4_24790 IPR023400 DNA recombination and repair protein RecA, C-terminal VagYM4_24790 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain VagYM4_24790 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24800 IPR008136 CinA, C-terminal VagYM4_24800 IPR036653 CinA-like, C-terminal VagYM4_24810 IPR036678 MutS, connector domain superfamily VagYM4_24810 IPR005748 DNA mismatch repair protein MutS VagYM4_24810 IPR007860 DNA mismatch repair protein MutS, connector domain VagYM4_24810 IPR007695 DNA mismatch repair protein MutS-like, N-terminal VagYM4_24810 IPR016151 DNA mismatch repair protein MutS, N-terminal VagYM4_24810 IPR007696 DNA mismatch repair protein MutS, core VagYM4_24810 IPR017261 DNA mismatch repair protein MutS/MSH VagYM4_24810 IPR036187 DNA mismatch repair protein MutS, core domain superfamily VagYM4_24810 IPR007861 DNA mismatch repair protein MutS, clamp VagYM4_24810 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24810 IPR000432 DNA mismatch repair protein MutS, C-terminal VagYM4_24820 IPR014284 RNA polymerase sigma-70 like domain VagYM4_24820 IPR000943 RNA polymerase sigma-70 VagYM4_24820 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_24820 IPR007630 RNA polymerase sigma-70 region 4 VagYM4_24820 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_24820 IPR012761 RNA polymerase sigma factor RpoS VagYM4_24820 IPR007624 RNA polymerase sigma-70 region 3 VagYM4_24820 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_24820 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_24820 IPR009042 RNA polymerase sigma-70 region 1.2 VagYM4_24830 IPR016047 Peptidase M23 VagYM4_24830 IPR036779 LysM domain superfamily VagYM4_24830 IPR018392 LysM domain VagYM4_24830 IPR011055 Duplicated hybrid motif VagYM4_24840 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase VagYM4_24840 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_24850 IPR030048 Survival protein SurE VagYM4_24850 IPR002828 Survival protein SurE-like phosphatase/nucleotidase VagYM4_24850 IPR036523 SurE-like phosphatase/nucleotidase superfamily VagYM4_24860 IPR011760 Pseudouridine synthase, TruD, insertion domain VagYM4_24860 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_24860 IPR042214 Pseudouridine synthase, TruD, catalytic domain VagYM4_24860 IPR001656 Pseudouridine synthase, TruD VagYM4_24860 IPR020119 Pseudouridine synthase TruD, conserved site VagYM4_24870 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase VagYM4_24870 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site VagYM4_24870 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily VagYM4_24880 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VagYM4_24880 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site VagYM4_24880 IPR034683 Cytidylyltransferase IspD/TarI VagYM4_24880 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_24890 IPR007060 Septum formation initiator FtsL/DivIC VagYM4_24890 IPR023081 Cell division protein FtsB VagYM4_24900 IPR036849 Enolase-like, C-terminal domain superfamily VagYM4_24900 IPR029017 Enolase-like, N-terminal VagYM4_24900 IPR020810 Enolase, C-terminal TIM barrel domain VagYM4_24900 IPR000941 Enolase VagYM4_24900 IPR020811 Enolase, N-terminal VagYM4_24900 IPR020809 Enolase, conserved site VagYM4_24910 IPR017926 Glutamine amidotransferase VagYM4_24910 IPR017456 CTP synthase, N-terminal VagYM4_24910 IPR004468 CTP synthase VagYM4_24910 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24910 IPR029062 Class I glutamine amidotransferase-like VagYM4_24910 IPR033828 CTP synthase GATase domain VagYM4_24920 IPR011551 NTP pyrophosphohydrolase MazG VagYM4_24920 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core VagYM4_24930 IPR004811 RelA/SpoT family VagYM4_24930 IPR012675 Beta-grasp domain superfamily VagYM4_24930 IPR003607 HD/PDEase domain VagYM4_24930 IPR007685 RelA/SpoT VagYM4_24930 IPR004095 TGS VagYM4_24930 IPR012676 TGS-like VagYM4_24930 IPR002912 ACT domain VagYM4_24930 IPR033655 RelA, TGS domain VagYM4_24940 IPR010280 (Uracil-5)-methyltransferase family VagYM4_24940 IPR002792 TRAM domain VagYM4_24940 IPR012340 Nucleic acid-binding, OB-fold VagYM4_24940 IPR030391 RNA methyltransferase TrmA, conserved site VagYM4_24940 IPR030390 RNA methyltransferase TrmA, active site VagYM4_24940 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD VagYM4_24940 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_24950 IPR001789 Signal transduction response regulator, receiver domain VagYM4_24950 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_24950 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_24950 IPR036641 HPT domain superfamily VagYM4_24950 IPR019247 Histidine kinase BarA, N-terminal VagYM4_24950 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_24950 IPR005467 Histidine kinase domain VagYM4_24950 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_24950 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_24950 IPR003660 HAMP domain VagYM4_24950 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_24950 IPR011006 CheY-like superfamily VagYM4_24960 IPR004568 Phosphopantetheine-protein transferase domain VagYM4_24960 IPR008278 4'-phosphopantetheinyl transferase domain VagYM4_24960 IPR002582 Holo-[acyl carrier protein] synthase VagYM4_24960 IPR037143 4'-phosphopantetheinyl transferase domain superfamily VagYM4_24970 IPR036130 Pyridoxine 5'-phosphate synthase VagYM4_24970 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ VagYM4_24970 IPR013785 Aldolase-type TIM barrel VagYM4_24980 IPR037278 ARFGAP/RecO-like zinc finger VagYM4_24980 IPR022572 DNA replication/recombination mediator RecO, N-terminal VagYM4_24980 IPR012340 Nucleic acid-binding, OB-fold VagYM4_24980 IPR003717 Recombination protein O, RecO VagYM4_24990 IPR015946 K homology domain-like, alpha/beta VagYM4_24990 IPR005662 GTP-binding protein Era VagYM4_24990 IPR005225 Small GTP-binding protein domain VagYM4_24990 IPR030388 Era-type guanine nucleotide-binding (G) domain VagYM4_24990 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_24990 IPR009019 K homology domain superfamily, prokaryotic type VagYM4_24990 IPR004044 K Homology domain, type 2 VagYM4_24990 IPR006073 GTP binding domain VagYM4_25000 IPR000999 Ribonuclease III domain VagYM4_25000 IPR036389 Ribonuclease III, endonuclease domain superfamily VagYM4_25000 IPR011907 Ribonuclease III VagYM4_25000 IPR014720 Double-stranded RNA-binding domain VagYM4_25010 IPR000223 Peptidase S26A, signal peptidase I VagYM4_25010 IPR036286 LexA/Signal peptidase-like superfamily VagYM4_25010 IPR019757 Peptidase S26A, signal peptidase I, lysine active site VagYM4_25010 IPR019756 Peptidase S26A, signal peptidase I, serine active site VagYM4_25010 IPR019758 Peptidase S26A, signal peptidase I, conserved site VagYM4_25010 IPR019533 Peptidase S26 VagYM4_25020 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_25020 IPR035654 Elongation factor 4, domain IV VagYM4_25020 IPR013842 GTP-binding protein LepA, C-terminal VagYM4_25020 IPR000795 Transcription factor, GTP-binding domain VagYM4_25020 IPR038363 LepA, C-terminal domain superfamily VagYM4_25020 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_25020 IPR004161 Translation elongation factor EFTu-like, domain 2 VagYM4_25020 IPR000640 Elongation factor EFG, domain V-like VagYM4_25020 IPR035647 EF-G domain III/V-like VagYM4_25020 IPR005225 Small GTP-binding protein domain VagYM4_25020 IPR006297 Elongation factor 4 VagYM4_25020 IPR031157 Tr-type G domain, conserved site VagYM4_25030 IPR007359 Positive regulator of sigma(E), RseC/MucC VagYM4_25030 IPR026268 Protein RseC VagYM4_25040 IPR033436 MucB/RseB, C-terminal VagYM4_25040 IPR038484 MucB/RseB, C-terminal domain superfamily VagYM4_25040 IPR005588 MucB/RseB VagYM4_25040 IPR033434 MucB/RseB, N-terminal VagYM4_25050 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily VagYM4_25050 IPR026279 Sigma-E factor negative regulatory protein RseA VagYM4_25050 IPR005572 Anti sigma-E protein RseA, N-terminal VagYM4_25050 IPR005573 Anti sigma-E protein RseA, C-terminal VagYM4_25060 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 VagYM4_25060 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site VagYM4_25060 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_25060 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_25060 IPR014284 RNA polymerase sigma-70 like domain VagYM4_25060 IPR039425 RNA polymerase sigma-70 like VagYM4_25060 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_25060 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_25060 IPR014286 RNA polymerase sigma-70 RpoE type VagYM4_25070 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain VagYM4_25070 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_25070 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily VagYM4_25070 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal VagYM4_25070 IPR005288 L-aspartate oxidase VagYM4_25070 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily VagYM4_25090 IPR036714 Flavinator of succinate dehydrogenase superfamily VagYM4_25090 IPR005631 Flavinator of succinate dehydrogenase VagYM4_25100 IPR006222 Aminomethyltransferase, folate-binding domain VagYM4_25100 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal VagYM4_25100 IPR017703 YgfZ/GcvT conserved site VagYM4_25100 IPR023758 tRNA-modifying protein YgfZ VagYM4_25130 IPR002938 FAD-binding domain VagYM4_25130 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_25130 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 VagYM4_25130 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site VagYM4_25140 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 VagYM4_25140 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_25140 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site VagYM4_25140 IPR002938 FAD-binding domain VagYM4_25140 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase VagYM4_25150 IPR036255 YgfB-like superfamily VagYM4_25150 IPR011978 Uncharacterised protein family UPF0149 VagYM4_25160 IPR007838 Cell division protein ZapA-like VagYM4_25160 IPR036192 Cell division protein ZapA-like superfamily VagYM4_25160 IPR023771 Cell division protein ZapA, eubacteria VagYM4_25170 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily VagYM4_25170 IPR002698 5-formyltetrahydrofolate cyclo-ligase VagYM4_25170 IPR037171 NagB/RpiA transferase-like VagYM4_25180 IPR004788 Ribose 5-phosphate isomerase, type A VagYM4_25180 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup VagYM4_25180 IPR037171 NagB/RpiA transferase-like VagYM4_25190 IPR002912 ACT domain VagYM4_25190 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM4_25190 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 VagYM4_25190 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VagYM4_25190 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain VagYM4_25190 IPR036291 NAD(P)-binding domain superfamily VagYM4_25200 IPR007497 Protein of unknown function DUF541 VagYM4_25210 IPR005119 LysR, substrate-binding VagYM4_25210 IPR000847 Transcription regulator HTH, LysR VagYM4_25210 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_25210 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_25210 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria VagYM4_25210 IPR017685 HTH-type transcriptional regulator ArgP VagYM4_25220 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_25220 IPR004777 L-lysine exporter/arginine exporter VagYM4_25220 IPR023445 Arginine exporter protein ArgO, enterobacteria VagYM4_25240 IPR010920 LSM domain superfamily VagYM4_25240 IPR006685 Mechanosensitive ion channel MscS VagYM4_25240 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 VagYM4_25240 IPR011066 Mechanosensitive ion channel MscS, C-terminal VagYM4_25240 IPR023408 Mechanosensitive ion channel MscS domain superfamily VagYM4_25240 IPR008910 Conserved TM helix VagYM4_25240 IPR006686 Mechanosensitive ion channel MscS, conserved site VagYM4_25250 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype VagYM4_25250 IPR013785 Aldolase-type TIM barrel VagYM4_25250 IPR000771 Fructose-bisphosphate aldolase, class-II VagYM4_25260 IPR001576 Phosphoglycerate kinase VagYM4_25260 IPR036043 Phosphoglycerate kinase superfamily VagYM4_25260 IPR015824 Phosphoglycerate kinase, N-terminal VagYM4_25260 IPR015911 Phosphoglycerate kinase, conserved site VagYM4_25270 IPR036291 NAD(P)-binding domain superfamily VagYM4_25270 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain VagYM4_25270 IPR006422 D-erythrose-4-phosphate dehydrogenase VagYM4_25270 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain VagYM4_25270 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family VagYM4_25280 IPR012910 TonB-dependent receptor, plug domain VagYM4_25280 IPR039426 Vitamin B12 transporter BtuB-like VagYM4_25280 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_25280 IPR010917 TonB-dependent receptor, conserved site VagYM4_25280 IPR010916 TonB box, conserved site VagYM4_25280 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_25280 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_25290 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_25290 IPR000847 Transcription regulator HTH, LysR VagYM4_25290 IPR005119 LysR, substrate-binding VagYM4_25290 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_25300 IPR033247 Transketolase family VagYM4_25300 IPR005474 Transketolase, N-terminal VagYM4_25300 IPR029061 Thiamin diphosphate-binding fold VagYM4_25300 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II VagYM4_25300 IPR005475 Transketolase-like, pyrimidine-binding domain VagYM4_25300 IPR005478 Transketolase, bacterial-like VagYM4_25300 IPR020826 Transketolase binding site VagYM4_25300 IPR033248 Transketolase, C-terminal domain VagYM4_25310 IPR022630 S-adenosylmethionine synthetase, C-terminal VagYM4_25310 IPR002133 S-adenosylmethionine synthetase VagYM4_25310 IPR022628 S-adenosylmethionine synthetase, N-terminal VagYM4_25310 IPR022629 S-adenosylmethionine synthetase, central domain VagYM4_25310 IPR022636 S-adenosylmethionine synthetase superfamily VagYM4_25310 IPR022631 S-adenosylmethionine synthetase, conserved site VagYM4_25330 IPR035240 SprT-like, zinc ribbon domain VagYM4_25330 IPR006640 SprT-like VagYM4_25330 IPR023483 Uncharacterised protein family SprT VagYM4_25340 IPR007346 Endonuclease I VagYM4_25350 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_25350 IPR006700 Ribosomal RNA small subunit methyltransferase E VagYM4_25350 IPR015947 PUA-like superfamily VagYM4_25350 IPR029028 Alpha/beta knot methyltransferases VagYM4_25360 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_25360 IPR004215 Prokaryotic glutathione synthetase, N-terminal VagYM4_25360 IPR004218 Prokaryotic glutathione synthetase, ATP-binding VagYM4_25360 IPR006284 Glutathione synthetase, prokaryotic VagYM4_25360 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_25360 IPR011761 ATP-grasp fold VagYM4_25370 IPR003774 Protein of unknown function UPF0301 VagYM4_25380 IPR012337 Ribonuclease H-like superfamily VagYM4_25380 IPR037027 YqgF/RNase H-like domain superfamily VagYM4_25380 IPR006641 YqgF/RNase H-like domain VagYM4_25380 IPR005227 Putative pre-16S rRNA nuclease VagYM4_25390 IPR006321 Pilus retraction protein PilT VagYM4_25390 IPR001482 Type II/IV secretion system protein VagYM4_25390 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_25390 IPR003593 AAA+ ATPase domain VagYM4_25400 IPR006321 Pilus retraction protein PilT VagYM4_25400 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_25400 IPR003593 AAA+ ATPase domain VagYM4_25400 IPR001482 Type II/IV secretion system protein VagYM4_25410 IPR001608 Alanine racemase, N-terminal VagYM4_25410 IPR029066 PLP-binding barrel VagYM4_25410 IPR011078 Pyridoxal phosphate homeostasis protein VagYM4_25420 IPR000304 Pyrroline-5-carboxylate reductase VagYM4_25420 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain VagYM4_25420 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal VagYM4_25420 IPR036291 NAD(P)-binding domain superfamily VagYM4_25420 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_25430 IPR003425 CCB3/YggT VagYM4_25440 IPR005228 Conserved hypothetical protein CHP00251 VagYM4_25440 IPR036591 YggU-like superfamily VagYM4_25440 IPR003746 Protein of unknown function DUF167 VagYM4_25460 IPR029001 Inosine triphosphate pyrophosphatase-like VagYM4_25460 IPR002637 Ham1-like protein VagYM4_25460 IPR020922 dITP/XTP pyrophosphatase VagYM4_25470 IPR010723 HemN, C-terminal VagYM4_25470 IPR004559 Heme chaperone HemW-like VagYM4_25470 IPR006638 Elp3/MiaB/NifB VagYM4_25470 IPR023404 Radical SAM, alpha/beta horseshoe VagYM4_25470 IPR007197 Radical SAM VagYM4_25470 IPR034505 Anaerobic coproporphyrinogen-III oxidase VagYM4_25480 IPR015868 Glutaminase VagYM4_25480 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_25490 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_25490 IPR012327 D12 class N6 adenine-specific DNA methyltransferase VagYM4_25490 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site VagYM4_25500 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_25500 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type VagYM4_25510 IPR005760 A/G-specific adenine glycosylase MutY VagYM4_25510 IPR011257 DNA glycosylase VagYM4_25510 IPR004036 Endonuclease III-like, conserved site-2 VagYM4_25510 IPR029119 MutY, C-terminal VagYM4_25510 IPR015797 NUDIX hydrolase-like domain superfamily VagYM4_25510 IPR004035 Endonuclease III, iron-sulphur binding site VagYM4_25510 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal VagYM4_25510 IPR000445 Helix-hairpin-helix motif VagYM4_25510 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif VagYM4_25510 IPR003265 HhH-GPD domain VagYM4_25520 IPR007457 Fe(II) trafficking protein YggX VagYM4_25520 IPR036766 Fe(II) trafficking protein YggX superfamily VagYM4_25530 IPR024570 Murein transglycosylase-C, N-terminal VagYM4_25530 IPR008258 Transglycosylase SLT domain 1 VagYM4_25530 IPR023664 Murein transglycosylase-C VagYM4_25530 IPR000189 Prokaryotic transglycosylase, active site VagYM4_25530 IPR023346 Lysozyme-like domain superfamily VagYM4_25540 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_25540 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_25540 IPR033480 Single Cache domain 2 VagYM4_25540 IPR000727 Target SNARE coiled-coil homology domain VagYM4_25540 IPR003660 HAMP domain VagYM4_25550 IPR015590 Aldehyde dehydrogenase domain VagYM4_25550 IPR010102 Succinate semialdehyde dehydrogenase VagYM4_25550 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_25550 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_25550 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_25550 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_25550 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_25560 IPR037522 HD-GYP domain VagYM4_25560 IPR003607 HD/PDEase domain VagYM4_25570 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_25570 IPR001761 Periplasmic binding protein/LacI sugar binding domain VagYM4_25570 IPR028082 Periplasmic binding protein-like I VagYM4_25570 IPR000843 LacI-type HTH domain VagYM4_25570 IPR023588 Transcription regulator HTH, PurR VagYM4_25580 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel VagYM4_25580 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria VagYM4_25580 IPR006879 Carbohydrate deacetylase YdjC-like VagYM4_25590 IPR019802 Glycoside hydrolase, family 4, conserved site VagYM4_25590 IPR001088 Glycoside hydrolase, family 4 VagYM4_25590 IPR022616 Glycosyl hydrolase, family 4, C-terminal VagYM4_25590 IPR036291 NAD(P)-binding domain superfamily VagYM4_25590 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal VagYM4_25600 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily VagYM4_25600 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit VagYM4_25610 IPR003352 Phosphotransferase system, EIIC VagYM4_25610 IPR004501 Phosphotransferase system, EIIC component, type 3 VagYM4_25610 IPR004796 Phosphotransferase system, cellobiose-type IIC component VagYM4_25620 IPR013012 Phosphotransferase system, EIIB component, type 3 VagYM4_25620 IPR003501 Phosphotransferase system, EIIB component, type 2/3 VagYM4_25620 IPR036095 PTS system IIB component-like superfamily VagYM4_25630 IPR002509 NodB homology domain VagYM4_25630 IPR036573 Carbohydrate-binding module superfamily 5/12 VagYM4_25630 IPR003610 Carbohydrate-binding module family 5/12 VagYM4_25630 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel VagYM4_25640 IPR029787 Nucleotide cyclase VagYM4_25640 IPR000160 GGDEF domain VagYM4_25640 IPR035965 PAS domain superfamily VagYM4_25640 IPR013656 PAS fold-4 VagYM4_25640 IPR000700 PAS-associated, C-terminal VagYM4_25640 IPR000014 PAS domain VagYM4_25650 IPR003346 Transposase, IS116/IS110/IS902 VagYM4_25650 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal VagYM4_25660 IPR003346 Transposase, IS116/IS110/IS902 VagYM4_25660 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal VagYM4_25680 IPR025668 Transposase DDE domain VagYM4_25700 IPR005835 Nucleotidyl transferase domain VagYM4_25700 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial VagYM4_25700 IPR005836 ADP-glucose pyrophosphorylase, conserved site VagYM4_25700 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_25700 IPR011831 Glucose-1-phosphate adenylyltransferase VagYM4_25700 IPR011004 Trimeric LpxA-like superfamily VagYM4_25780 IPR011006 CheY-like superfamily VagYM4_25780 IPR029787 Nucleotide cyclase VagYM4_25780 IPR000160 GGDEF domain VagYM4_25780 IPR001789 Signal transduction response regulator, receiver domain VagYM4_25940 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_25940 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_25940 IPR036291 NAD(P)-binding domain superfamily VagYM4_25950 IPR018723 Protein of unknown function DUF2254, membrane VagYM4_25970 IPR030923 LPS export ABC transporter permease LptG VagYM4_25970 IPR005495 Permease LptG/LptF-related VagYM4_25980 IPR005495 Permease LptG/LptF-related VagYM4_25980 IPR030922 LPS export ABC transporter permease LptF VagYM4_25990 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B VagYM4_25990 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal VagYM4_25990 IPR023042 Peptidase M17, leucine aminopeptidase VagYM4_25990 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal VagYM4_26000 IPR007459 DNA polymerase III chi subunit, HolC VagYM4_26000 IPR036768 DNA polymerase III subunit chi superfamily VagYM4_26010 IPR002300 Aminoacyl-tRNA synthetase, class Ia VagYM4_26010 IPR002303 Valine-tRNA ligase VagYM4_26010 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm VagYM4_26010 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain VagYM4_26010 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily VagYM4_26010 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_26010 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding VagYM4_26010 IPR033705 Valyl tRNA synthetase, anticodon-binding domain VagYM4_26010 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm VagYM4_26010 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_26010 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding VagYM4_26030 IPR000182 GNAT domain VagYM4_26030 IPR016181 Acyl-CoA N-acyltransferase VagYM4_26050 IPR036701 RraB-like superfamily VagYM4_26050 IPR016716 Regulator of ribonuclease activity B VagYM4_26050 IPR009671 Regulator of ribonuclease activity B domain VagYM4_26060 IPR003876 Arginine deiminase VagYM4_26070 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding VagYM4_26070 IPR024904 Ornithine carbamoyltransferase VagYM4_26070 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain VagYM4_26070 IPR002292 Ornithine/putrescine carbamoyltransferase VagYM4_26070 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily VagYM4_26070 IPR006130 Aspartate/ornithine carbamoyltransferase VagYM4_26090 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding VagYM4_26090 IPR006130 Aspartate/ornithine carbamoyltransferase VagYM4_26090 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain VagYM4_26090 IPR002082 Aspartate carbamoyltransferase VagYM4_26090 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily VagYM4_26100 IPR002801 Aspartate transcarbamylase regulatory subunit VagYM4_26100 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal VagYM4_26100 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal VagYM4_26100 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily VagYM4_26100 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily VagYM4_26110 IPR006056 RidA family VagYM4_26110 IPR006175 YjgF/YER057c/UK114 family VagYM4_26110 IPR019897 RidA, conserved site VagYM4_26110 IPR035959 RutC-like superfamily VagYM4_26120 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase VagYM4_26120 IPR002123 Phospholipid/glycerol acyltransferase VagYM4_26130 IPR001986 Enolpyruvate transferase domain VagYM4_26130 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase VagYM4_26130 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta VagYM4_26130 IPR036968 Enolpyruvate transferase domain superfamily VagYM4_26140 IPR002634 BolA protein VagYM4_26140 IPR036065 BolA-like superfamily VagYM4_26160 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC VagYM4_26160 IPR042245 Tgt2/MlaC superfamily VagYM4_26170 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD VagYM4_26170 IPR003399 Mce/MlaD VagYM4_26180 IPR003453 ABC transport permease subunit MlaE, Proteobacteria VagYM4_26180 IPR030802 ABC transporter permease MalE VagYM4_26190 IPR003593 AAA+ ATPase domain VagYM4_26190 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_26190 IPR017871 ABC transporter, conserved site VagYM4_26190 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl VagYM4_26190 IPR003439 ABC transporter-like VagYM4_26200 IPR004837 Sodium/calcium exchanger membrane region VagYM4_26200 IPR004481 Sodium/potassium/calcium exchanger VagYM4_26210 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type VagYM4_26210 IPR001347 Sugar isomerase (SIS) VagYM4_26210 IPR000644 CBS domain VagYM4_26210 IPR035474 KpsF-like, SIS domain VagYM4_26230 IPR014340 Lipopolysaccharide export system protein LptA VagYM4_26230 IPR005653 Organic solvent tolerance-like, N-terminal VagYM4_26240 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_26240 IPR030921 LPS export ABC transporter, ATP-binding protein LptB VagYM4_26240 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal VagYM4_26240 IPR017871 ABC transporter, conserved site VagYM4_26240 IPR003439 ABC transporter-like VagYM4_26240 IPR003593 AAA+ ATPase domain VagYM4_26250 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily VagYM4_26250 IPR007634 RNA polymerase sigma factor 54, DNA-binding VagYM4_26250 IPR007046 RNA polymerase sigma factor 54, core-binding domain VagYM4_26250 IPR000394 RNA polymerase sigma factor 54 VagYM4_26260 IPR003489 Ribosome hibernation promoting factor/RaiA VagYM4_26260 IPR036567 Ribosome hibernation promotion factor-like VagYM4_26270 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN VagYM4_26270 IPR016152 Phosphotransferase/anion transporter VagYM4_26270 IPR002178 PTS EIIA type-2 domain VagYM4_26280 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_26280 IPR005337 RapZ-like family VagYM4_26290 IPR002114 Phosphotransferase system, HPr serine phosphorylation site VagYM4_26290 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site VagYM4_26290 IPR000032 Phosphocarrier protein HPr-like VagYM4_26290 IPR035895 HPr-like superfamily VagYM4_26300 IPR000644 CBS domain VagYM4_26300 IPR006668 Magnesium transporter, MgtE intracellular domain VagYM4_26300 IPR038076 MgtE, N-terminal domain superfamily VagYM4_26300 IPR038048 Magnesium transporter MgtE, transmembrane domain VagYM4_26300 IPR006669 Magnesium transporter MgtE VagYM4_26300 IPR006667 SLC41 divalent cation transporters, integral membrane domain VagYM4_26300 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily VagYM4_26310 IPR036059 Metalloprotease TldD/PmbA superfamily VagYM4_26310 IPR035068 Metalloprotease TldD/PmbA, N-terminal VagYM4_26310 IPR002510 Metalloprotease TldD/PmbA VagYM4_26320 IPR023153 PSPTO4464-like domain superfamily VagYM4_26320 IPR006839 Ribosome-associated, YjgA VagYM4_26330 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM4_26330 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VagYM4_26330 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain VagYM4_26330 IPR036291 NAD(P)-binding domain superfamily VagYM4_26340 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_26340 IPR006225 Pseudouridine synthase, RluC/RluD VagYM4_26340 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site VagYM4_26340 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_26360 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_26360 IPR022737 RNA polymerase recycling, bacterial, C-terminal VagYM4_26360 IPR040766 RapA, N-terminal Tudor-like domain 2 VagYM4_26360 IPR038718 SNF2-like, N-terminal domain superfamily VagYM4_26360 IPR000330 SNF2-related, N-terminal domain VagYM4_26360 IPR040765 RapA, N-terminal Tudor like domain 1 VagYM4_26360 IPR023949 RNA polymerase-associated protein RapA VagYM4_26360 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_26360 IPR001650 Helicase, C-terminal VagYM4_26370 IPR002716 PIN domain VagYM4_26370 IPR003714 PhoH-like protein VagYM4_26370 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_26370 IPR029060 PIN-like domain superfamily VagYM4_26380 IPR036059 Metalloprotease TldD/PmbA superfamily VagYM4_26380 IPR035068 Metalloprotease TldD/PmbA, N-terminal VagYM4_26380 IPR002510 Metalloprotease TldD/PmbA VagYM4_26380 IPR025502 TldD VagYM4_26390 IPR001110 Uncharacterised protein family UPF0012, conserved site VagYM4_26390 IPR003010 Carbon-nitrogen hydrolase VagYM4_26390 IPR036526 Carbon-nitrogen hydrolase superfamily VagYM4_26400 IPR011836 Conserved hypothetical protein CHP02099 VagYM4_26400 IPR025263 Domain of unknown function DUF3971 VagYM4_26400 IPR032712 AsmA-like, C-terminal VagYM4_26410 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G VagYM4_26410 IPR012340 Nucleic acid-binding, OB-fold VagYM4_26410 IPR022967 RNA-binding domain, S1 VagYM4_26410 IPR004659 Ribonuclease E/G VagYM4_26410 IPR003029 S1 domain VagYM4_26420 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein VagYM4_26420 IPR029001 Inosine triphosphate pyrophosphatase-like VagYM4_26430 IPR007227 Cell shape-determining protein MreD VagYM4_26430 IPR026034 Cell shape-determining protein MreD, proteobacterial type VagYM4_26440 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 VagYM4_26440 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 VagYM4_26440 IPR007221 Rod shape-determining protein MreC VagYM4_26450 IPR004753 Cell shape determining protein MreB VagYM4_26520 IPR001082 Fimbrial protein pilin VagYM4_26520 IPR012902 Prokaryotic N-terminal methylation site VagYM4_26520 IPR000983 Bacterial general secretion pathway protein G-type pilin VagYM4_26540 IPR001992 Type II secretion system conserved site VagYM4_26540 IPR018076 Type II secretion system F domain VagYM4_26540 IPR042094 Type II secretion system F domain superfamily VagYM4_26540 IPR011850 General secretion pathway protein F VagYM4_26540 IPR003004 GspF/PilC family VagYM4_26550 IPR013374 ATPase, type IV, pilus assembly, PilB VagYM4_26550 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_26550 IPR042181 Type II secretion system, protein E, N-terminal VagYM4_26550 IPR001482 Type II/IV secretion system protein VagYM4_26550 IPR037257 General secretory system II, protein E, N-terminal superfamily VagYM4_26550 IPR007831 General secretory system II, protein E, N-terminal VagYM4_26570 IPR036365 PGBD-like superfamily VagYM4_26570 IPR003593 AAA+ ATPase domain VagYM4_26570 IPR036366 PGBD superfamily VagYM4_26570 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_26570 IPR002477 Peptidoglycan binding-like VagYM4_26580 IPR001775 GspD/PilQ family VagYM4_26580 IPR038591 NolW-like superfamily VagYM4_26580 IPR013356 Type II secretion system GspD VagYM4_26580 IPR004845 Type II secretion system GspD, conserved site VagYM4_26580 IPR004846 Type II/III secretion system VagYM4_26580 IPR005644 NolW-like VagYM4_26620 IPR029787 Nucleotide cyclase VagYM4_26620 IPR000160 GGDEF domain VagYM4_26620 IPR035919 EAL domain superfamily VagYM4_26620 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 VagYM4_26620 IPR001633 EAL domain VagYM4_26630 IPR000477 Reverse transcriptase domain VagYM4_26630 IPR024937 Domain X VagYM4_26640 IPR011344 Single-stranded DNA-binding protein VagYM4_26640 IPR000424 Primosome PriB/single-strand DNA-binding VagYM4_26640 IPR012340 Nucleic acid-binding, OB-fold VagYM4_26650 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_26650 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_26650 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_26660 IPR005835 Nucleotidyl transferase domain VagYM4_26660 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type VagYM4_26660 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_26670 IPR041102 UvrA, interaction domain VagYM4_26670 IPR041552 UvrA DNA-binding domain VagYM4_26670 IPR004602 UvrABC system subunit A VagYM4_26670 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_26670 IPR017871 ABC transporter, conserved site VagYM4_26670 IPR003439 ABC transporter-like VagYM4_26690 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site VagYM4_26690 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_26690 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_26690 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase VagYM4_26690 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_26690 IPR000192 Aminotransferase class V domain VagYM4_26700 IPR002912 ACT domain VagYM4_26700 IPR005260 Aspartate kinase, monofunctional class VagYM4_26700 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_26700 IPR001341 Aspartate kinase VagYM4_26700 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain VagYM4_26700 IPR018042 Aspartate kinase, conserved site VagYM4_26700 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_26710 IPR033706 Methionine synthase, B12-binding domain VagYM4_26710 IPR036589 Homocysteine-binding domain superfamily VagYM4_26710 IPR003726 Homocysteine-binding domain VagYM4_26710 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily VagYM4_26710 IPR004223 Vitamin B12-dependent methionine synthase, activation domain VagYM4_26710 IPR006158 Cobalamin (vitamin B12)-binding domain VagYM4_26710 IPR036594 Methionine synthase domain VagYM4_26710 IPR011005 Dihydropteroate synthase-like VagYM4_26710 IPR036724 Cobalamin-binding domain superfamily VagYM4_26710 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain VagYM4_26710 IPR011822 Cobalamin-dependent methionine synthase VagYM4_26710 IPR000489 Pterin-binding domain VagYM4_26720 IPR006153 Cation/H+ exchanger VagYM4_26720 IPR018422 Cation/H+ exchanger, CPA1 family VagYM4_26720 IPR038770 Sodium/solute symporter superfamily VagYM4_26730 IPR038965 Transposase InsF-like VagYM4_26730 IPR001584 Integrase, catalytic core VagYM4_26730 IPR012337 Ribonuclease H-like superfamily VagYM4_26730 IPR036397 Ribonuclease H superfamily VagYM4_26740 IPR009057 Homeobox-like domain superfamily VagYM4_26740 IPR002514 Transposase IS3/IS911family VagYM4_26750 IPR002500 Phosphoadenosine phosphosulphate reductase VagYM4_26750 IPR011800 Phosphoadenosine phosphosulphate reductase CysH VagYM4_26750 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_26750 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase VagYM4_26760 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site VagYM4_26760 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit VagYM4_26760 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain VagYM4_26760 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain VagYM4_26760 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily VagYM4_26770 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_26770 IPR001433 Oxidoreductase FAD/NAD(P)-binding VagYM4_26770 IPR008254 Flavodoxin/nitric oxide synthase VagYM4_26770 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase VagYM4_26770 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily VagYM4_26770 IPR029039 Flavoprotein-like superfamily VagYM4_26770 IPR017927 FAD-binding domain, ferredoxin reductase-type VagYM4_26770 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria VagYM4_26770 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding VagYM4_26770 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VagYM4_26770 IPR001094 Flavodoxin-like VagYM4_26770 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain VagYM4_26810 IPR013785 Aldolase-type TIM barrel VagYM4_26810 IPR035587 DUS-like, FMN-binding domain VagYM4_26810 IPR004653 tRNA-dihydrouridine(20/20a) synthase VagYM4_26810 IPR001269 tRNA-dihydrouridine synthase VagYM4_26810 IPR018517 tRNA-dihydrouridine synthase, conserved site VagYM4_26840 IPR023445 Arginine exporter protein ArgO, enterobacteria VagYM4_26840 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_26840 IPR004777 L-lysine exporter/arginine exporter VagYM4_26860 IPR004017 Cysteine-rich domain VagYM4_26860 IPR009051 Alpha-helical ferredoxin VagYM4_26860 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit VagYM4_26860 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_26860 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_26870 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit VagYM4_26870 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_26870 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain VagYM4_26880 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase VagYM4_26880 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit VagYM4_26880 IPR007419 BFD-like [2Fe-2S]-binding domain VagYM4_26880 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_26880 IPR006076 FAD dependent oxidoreductase VagYM4_26880 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily VagYM4_26890 IPR025668 Transposase DDE domain VagYM4_27020 IPR002481 Ferric-uptake regulator VagYM4_27020 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_27020 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_27040 IPR035482 Phosphoglucose isomerase, SIS domain 2 VagYM4_27040 IPR001672 Phosphoglucose isomerase (PGI) VagYM4_27040 IPR035476 Phosphoglucose isomerase, SIS domain 1 VagYM4_27040 IPR023096 Phosphoglucose isomerase, C-terminal VagYM4_27040 IPR018189 Phosphoglucose isomerase, conserved site VagYM4_27060 IPR035917 YjbQ-like superfamily VagYM4_27060 IPR001602 Uncharacterised protein family UPF0047 VagYM4_27070 IPR029066 PLP-binding barrel VagYM4_27070 IPR000821 Alanine racemase VagYM4_27070 IPR001608 Alanine racemase, N-terminal VagYM4_27070 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal VagYM4_27070 IPR011079 Alanine racemase, C-terminal VagYM4_27070 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site VagYM4_27080 IPR003593 AAA+ ATPase domain VagYM4_27080 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27080 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal VagYM4_27080 IPR007693 DNA helicase, DnaB-like, N-terminal VagYM4_27080 IPR007694 DNA helicase, DnaB-like, C-terminal VagYM4_27080 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily VagYM4_27080 IPR007692 DNA helicase, DnaB type VagYM4_27100 IPR020070 Ribosomal protein L9, N-terminal VagYM4_27100 IPR036791 Ribosomal protein L9, C-terminal domain superfamily VagYM4_27100 IPR036935 Ribosomal protein L9, N-terminal domain superfamily VagYM4_27100 IPR020069 Ribosomal protein L9, C-terminal VagYM4_27100 IPR020594 Ribosomal protein L9, bacteria/chloroplast VagYM4_27100 IPR009027 Ribosomal protein L9/RNase H1, N-terminal VagYM4_27100 IPR000244 Ribosomal protein L9 VagYM4_27110 IPR001648 Ribosomal protein S18 VagYM4_27110 IPR018275 Ribosomal protein S18, conserved site VagYM4_27110 IPR036870 Ribosomal protein S18 superfamily VagYM4_27120 IPR023646 Primosomal replication protein PriB VagYM4_27120 IPR012340 Nucleic acid-binding, OB-fold VagYM4_27120 IPR000424 Primosome PriB/single-strand DNA-binding VagYM4_27130 IPR035980 Ribosomal protein S6 superfamily VagYM4_27130 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 VagYM4_27130 IPR020814 Ribosomal protein S6, plastid/chloroplast VagYM4_27130 IPR020815 Ribosomal protein S6, conserved site VagYM4_27130 IPR000529 Ribosomal protein S6 VagYM4_27140 IPR013785 Aldolase-type TIM barrel VagYM4_27140 IPR000056 Ribulose-phosphate 3-epimerase-like VagYM4_27140 IPR026019 Ribulose-phosphate 3-epimerase VagYM4_27140 IPR011060 Ribulose-phosphate binding barrel VagYM4_27150 IPR012327 D12 class N6 adenine-specific DNA methyltransferase VagYM4_27150 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_27150 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_27150 IPR023095 Adenine-specific methyltransferase, domain 2 VagYM4_27150 IPR012263 Adenine modification methylase, M.EcoRV-type VagYM4_27170 IPR030960 3-dehydroquinate synthase domain VagYM4_27170 IPR030963 3-dehydroquinate synthase family VagYM4_27170 IPR016037 3-dehydroquinate synthase AroB VagYM4_27180 IPR023000 Shikimate kinase, conserved site VagYM4_27180 IPR031322 Shikimate kinase/gluconokinase VagYM4_27180 IPR000623 Shikimate kinase/Threonine synthase-like 1 VagYM4_27180 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27190 IPR004845 Type II secretion system GspD, conserved site VagYM4_27190 IPR001775 GspD/PilQ family VagYM4_27190 IPR004846 Type II/III secretion system VagYM4_27190 IPR011662 Secretin/TonB, short N-terminal domain VagYM4_27190 IPR021731 AMIN domain VagYM4_27190 IPR005644 NolW-like VagYM4_27190 IPR013355 Type IV pilus secretin PilQ VagYM4_27190 IPR038591 NolW-like superfamily VagYM4_27240 IPR031376 Penicillin-binding protein, OB-like domain VagYM4_27240 IPR023346 Lysozyme-like domain superfamily VagYM4_27240 IPR036950 Penicillin binding protein transglycosylase domain VagYM4_27240 IPR001460 Penicillin-binding protein, transpeptidase VagYM4_27240 IPR001264 Glycosyl transferase, family 51 VagYM4_27240 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_27250 IPR000847 Transcription regulator HTH, LysR VagYM4_27250 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_27250 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_27250 IPR005119 LysR, substrate-binding VagYM4_27260 IPR013740 Redoxin VagYM4_27260 IPR037944 Peroxiredoxin-5-like VagYM4_27260 IPR014025 Glutaredoxin subgroup VagYM4_27260 IPR011906 Glutaredoxin domain VagYM4_27260 IPR002109 Glutaredoxin VagYM4_27260 IPR011767 Glutaredoxin active site VagYM4_27260 IPR036249 Thioredoxin-like superfamily VagYM4_27270 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site VagYM4_27270 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I VagYM4_27270 IPR006258 Dihydrolipoamide dehydrogenase VagYM4_27270 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_27270 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_27270 IPR023753 FAD/NAD(P)-binding domain VagYM4_27270 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily VagYM4_27300 IPR016181 Acyl-CoA N-acyltransferase VagYM4_27300 IPR029419 Argininosuccinate lyase, C-terminal VagYM4_27300 IPR024083 Fumarase/histidase, N-terminal VagYM4_27300 IPR009049 Argininosuccinate lyase VagYM4_27300 IPR011244 Bifunctional argininosuccinate lyase/acetyltransferase VagYM4_27300 IPR000182 GNAT domain VagYM4_27300 IPR022761 Fumarate lyase, N-terminal VagYM4_27300 IPR000362 Fumarate lyase family VagYM4_27300 IPR020557 Fumarate lyase, conserved site VagYM4_27300 IPR008948 L-Aspartase-like VagYM4_27310 IPR001518 Argininosuccinate synthase VagYM4_27310 IPR018223 Argininosuccinate synthase, conserved site VagYM4_27310 IPR023434 Argininosuccinate synthase, type 1 subfamily VagYM4_27310 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body VagYM4_27310 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_27320 IPR041731 N-Acetyl-L-glutamate kinase, noncyclic VagYM4_27320 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_27320 IPR037528 Acetylglutamate kinase ArgB VagYM4_27320 IPR004662 Acetylglutamate kinase family VagYM4_27320 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_27330 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 VagYM4_27330 IPR036291 NAD(P)-binding domain superfamily VagYM4_27330 IPR000534 Semialdehyde dehydrogenase, NAD-binding VagYM4_27330 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site VagYM4_27330 IPR012280 Semialdehyde dehydrogenase, dimerisation domain VagYM4_27340 IPR010169 Acetylornithine deacetylase ArgE VagYM4_27340 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site VagYM4_27340 IPR036264 Bacterial exopeptidase dimerisation domain VagYM4_27340 IPR002933 Peptidase M20 VagYM4_27340 IPR011650 Peptidase M20, dimerisation domain VagYM4_27350 IPR021135 Phosphoenolpyruvate carboxylase VagYM4_27350 IPR033129 Phosphoenolpyruvate carboxylase, His active site VagYM4_27350 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_27350 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type VagYM4_27350 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site VagYM4_27370 IPR029041 FAD-linked oxidoreductase-like VagYM4_27370 IPR003171 Methylenetetrahydrofolate reductase VagYM4_27370 IPR004620 5,10-methylenetetrahydrofolate reductase VagYM4_27380 IPR036393 Acetylglutamate kinase-like superfamily VagYM4_27380 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain VagYM4_27380 IPR001048 Aspartate/glutamate/uridylate kinase VagYM4_27380 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding VagYM4_27380 IPR001341 Aspartate kinase VagYM4_27380 IPR018042 Aspartate kinase, conserved site VagYM4_27380 IPR001342 Homoserine dehydrogenase, catalytic VagYM4_27380 IPR019811 Homoserine dehydrogenase, conserved site VagYM4_27380 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I VagYM4_27380 IPR036291 NAD(P)-binding domain superfamily VagYM4_27390 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_27390 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_27390 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme VagYM4_27390 IPR011821 O-succinylhomoserine (thiol)-lyase VagYM4_27390 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_27410 IPR012302 Malic enzyme, NAD-binding VagYM4_27410 IPR015884 Malic enzyme, conserved site VagYM4_27410 IPR036291 NAD(P)-binding domain superfamily VagYM4_27410 IPR001891 Malic oxidoreductase VagYM4_27410 IPR012301 Malic enzyme, N-terminal domain VagYM4_27410 IPR037062 Malic enzyme, N-terminal domain superfamily VagYM4_27420 IPR002024 Bacterioferritin VagYM4_27420 IPR008331 Ferritin/DPS protein domain VagYM4_27420 IPR009078 Ferritin-like superfamily VagYM4_27420 IPR009040 Ferritin-like diiron domain VagYM4_27420 IPR012347 Ferritin-like VagYM4_27430 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily VagYM4_27430 IPR007419 BFD-like [2Fe-2S]-binding domain VagYM4_27440 IPR033720 Elongation factor Tu, domain 2 VagYM4_27440 IPR004161 Translation elongation factor EFTu-like, domain 2 VagYM4_27440 IPR031157 Tr-type G domain, conserved site VagYM4_27440 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain VagYM4_27440 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27440 IPR005225 Small GTP-binding protein domain VagYM4_27440 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle VagYM4_27440 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_27440 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VagYM4_27440 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal VagYM4_27440 IPR000795 Transcription factor, GTP-binding domain VagYM4_27450 IPR041095 Elongation Factor G, domain II VagYM4_27450 IPR009022 Elongation factor G, domain III VagYM4_27450 IPR035647 EF-G domain III/V-like VagYM4_27450 IPR035649 EFG, domain V VagYM4_27450 IPR000640 Elongation factor EFG, domain V-like VagYM4_27450 IPR004161 Translation elongation factor EFTu-like, domain 2 VagYM4_27450 IPR031157 Tr-type G domain, conserved site VagYM4_27450 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27450 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_27450 IPR005225 Small GTP-binding protein domain VagYM4_27450 IPR000795 Transcription factor, GTP-binding domain VagYM4_27450 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_27450 IPR004540 Translation elongation factor EFG/EF2 VagYM4_27450 IPR005517 Translation elongation factor EFG/EF2, domain IV VagYM4_27450 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_27460 IPR020606 Ribosomal protein S7, conserved site VagYM4_27460 IPR023798 Ribosomal protein S7 domain VagYM4_27460 IPR036823 Ribosomal protein S7 domain superfamily VagYM4_27460 IPR005717 Ribosomal protein S7, bacterial/organellar-type VagYM4_27460 IPR000235 Ribosomal protein S5/S7 VagYM4_27470 IPR006032 Ribosomal protein S12/S23 VagYM4_27470 IPR012340 Nucleic acid-binding, OB-fold VagYM4_27470 IPR005679 Ribosomal protein S12, bacterial-type VagYM4_27480 IPR007215 Sulphur relay, TusB/DsrH VagYM4_27480 IPR023526 Sulphur relay, TusB VagYM4_27480 IPR027396 DsrEFH-like VagYM4_27490 IPR027396 DsrEFH-like VagYM4_27490 IPR003787 Sulphur relay, DsrE/F-like protein VagYM4_27490 IPR017462 Sulphur relay, TusC/DsrF VagYM4_27500 IPR017463 Sulphur relay, TusD/DsrE VagYM4_27500 IPR003787 Sulphur relay, DsrE/F-like protein VagYM4_27500 IPR027396 DsrEFH-like VagYM4_27510 IPR039445 Transcriptional regulator DauR-like, HTH domain VagYM4_27510 IPR013559 YheO-like VagYM4_27510 IPR039446 Transcriptional regulator DauR-like VagYM4_27520 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal VagYM4_27520 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VagYM4_27520 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily VagYM4_27540 IPR007236 SlyX VagYM4_27550 IPR000246 Peptidase T2, asparaginase 2 VagYM4_27550 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_27560 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VagYM4_27580 IPR003148 Regulator of K+ conductance, N-terminal VagYM4_27580 IPR038770 Sodium/solute symporter superfamily VagYM4_27580 IPR020884 Glutathione-regulated potassium-efflux system protein KefB VagYM4_27580 IPR004771 K+/H+ exchanger VagYM4_27580 IPR006153 Cation/H+ exchanger VagYM4_27580 IPR036291 NAD(P)-binding domain superfamily VagYM4_27590 IPR003680 Flavodoxin-like fold VagYM4_27590 IPR029039 Flavoprotein-like superfamily VagYM4_27590 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG VagYM4_27600 IPR003439 ABC transporter-like VagYM4_27600 IPR003593 AAA+ ATPase domain VagYM4_27600 IPR017871 ABC transporter, conserved site VagYM4_27600 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27600 IPR032781 ABC-transporter extension domain VagYM4_27620 IPR012020 AB hydrolase 4 family VagYM4_27620 IPR000952 AB hydrolase 4, conserved site VagYM4_27620 IPR029058 Alpha/Beta hydrolase fold VagYM4_27620 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_27630 IPR010648 Uncharacterised protein family UPF0270 VagYM4_27630 IPR036685 YehU-like superfamily VagYM4_27640 IPR006083 Phosphoribulokinase/uridine kinase VagYM4_27640 IPR006082 Phosphoribulokinase VagYM4_27640 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27650 IPR018488 Cyclic nucleotide-binding, conserved site VagYM4_27650 IPR018490 Cyclic nucleotide-binding-like VagYM4_27650 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_27650 IPR000595 Cyclic nucleotide-binding domain VagYM4_27650 IPR012318 Crp-type HTH domain VagYM4_27650 IPR014710 RmlC-like jelly roll fold VagYM4_27650 IPR018335 Transcription regulator HTH, Crp-type, conserved site VagYM4_27650 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_27670 IPR017649 Succinylglutamate-semialdehyde dehydrogenase VagYM4_27670 IPR015590 Aldehyde dehydrogenase domain VagYM4_27670 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_27670 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_27670 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_27670 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_27670 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_27680 IPR016181 Acyl-CoA N-acyltransferase VagYM4_27680 IPR007041 Arginine N-succinyltransferase AstA/AruG VagYM4_27680 IPR017650 Arginine N-succinyltransferase VagYM4_27690 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_27690 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_27690 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria VagYM4_27690 IPR004636 Acetylornithine/Succinylornithine transaminase family VagYM4_27690 IPR005814 Aminotransferase class-III VagYM4_27690 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_27700 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain VagYM4_27700 IPR017926 Glutamine amidotransferase VagYM4_27700 IPR029062 Class I glutamine amidotransferase-like VagYM4_27730 IPR002305 Aminoacyl-tRNA synthetase, class Ic VagYM4_27730 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_27730 IPR002306 Tryptophan-tRNA ligase VagYM4_27730 IPR024109 Tryptophan-tRNA ligase, bacterial-type VagYM4_27740 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VagYM4_27740 IPR036412 HAD-like superfamily VagYM4_27740 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic VagYM4_27740 IPR023214 HAD superfamily VagYM4_27740 IPR041492 Haloacid dehalogenase-like hydrolase VagYM4_27740 IPR006549 HAD-superfamily hydrolase,subfamily IIIA VagYM4_27740 IPR006439 HAD hydrolase, subfamily IA VagYM4_27740 IPR037512 Phosphoglycolate phosphatase, prokaryotic VagYM4_27750 IPR029064 50S ribosomal protein L30e-like VagYM4_27750 IPR013123 RNA 2-O ribose methyltransferase, substrate binding VagYM4_27750 IPR029028 Alpha/beta knot methyltransferases VagYM4_27750 IPR004441 RNA methyltransferase TrmH family VagYM4_27750 IPR001537 tRNA/rRNA methyltransferase, SpoU type VagYM4_27750 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB VagYM4_27750 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_27760 IPR013668 Ribonuclease R winged-helix domain VagYM4_27760 IPR011129 Cold shock domain VagYM4_27760 IPR040476 RNase II/RNase R, cold shock domain VagYM4_27760 IPR022967 RNA-binding domain, S1 VagYM4_27760 IPR003029 S1 domain VagYM4_27760 IPR011805 Ribonuclease R VagYM4_27760 IPR004476 Ribonuclease II/ribonuclease R VagYM4_27760 IPR022966 Ribonuclease II/R, conserved site VagYM4_27760 IPR001900 Ribonuclease II/R VagYM4_27760 IPR013223 Ribonuclease B, N-terminal OB domain VagYM4_27760 IPR012340 Nucleic acid-binding, OB-fold VagYM4_27770 IPR000944 Transcription regulator Rrf2-type VagYM4_27770 IPR023761 Transcriptional repressor HTH, NsrR VagYM4_27770 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_27770 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_27770 IPR030489 Transcription regulator Rrf2-type, conserved site VagYM4_27780 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_27780 IPR001433 Oxidoreductase FAD/NAD(P)-binding VagYM4_27780 IPR023950 Flavohemoprotein VagYM4_27780 IPR009050 Globin-like superfamily VagYM4_27780 IPR000971 Globin VagYM4_27780 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VagYM4_27780 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase VagYM4_27780 IPR017927 FAD-binding domain, ferredoxin reductase-type VagYM4_27780 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain VagYM4_27780 IPR012292 Globin/Protoglobin VagYM4_27790 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_27790 IPR006597 Sel1-like repeat VagYM4_27800 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27800 IPR042111 Adenylosuccinate synthetase, domain 3 VagYM4_27800 IPR042110 Adenylosuccinate synthetase, domain 2 VagYM4_27800 IPR001114 Adenylosuccinate synthetase VagYM4_27800 IPR033128 Adenylosuccinate synthase, active site VagYM4_27800 IPR018220 Adenylosuccinate synthase, GTP-binding site VagYM4_27800 IPR042109 Adenylosuccinate synthetase, domain 1 VagYM4_27810 IPR019201 Protein of unknown function DUF2065 VagYM4_27820 IPR010200 HflC VagYM4_27820 IPR001107 Band 7 domain VagYM4_27820 IPR036013 Band 7/SPFH domain superfamily VagYM4_27830 IPR036013 Band 7/SPFH domain superfamily VagYM4_27830 IPR020980 Menbrane protein HflK, N-terminal VagYM4_27830 IPR001107 Band 7 domain VagYM4_27830 IPR001972 Stomatin family VagYM4_27830 IPR010201 HflK VagYM4_27840 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27840 IPR042108 GTPase HflX, N-terminal domain superfamily VagYM4_27840 IPR025121 GTPase HflX, N-terminal VagYM4_27840 IPR006073 GTP binding domain VagYM4_27840 IPR032305 GTP-binding protein, middle domain VagYM4_27840 IPR035647 EF-G domain III/V-like VagYM4_27840 IPR030394 HflX-type guanine nucleotide-binding (G) domain VagYM4_27840 IPR016496 GTPase HflX VagYM4_27850 IPR010920 LSM domain superfamily VagYM4_27850 IPR005001 RNA-binding protein Hfq VagYM4_27860 IPR039657 Dimethylallyltransferase VagYM4_27860 IPR018022 IPP transferase VagYM4_27860 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27870 IPR042121 MutL, C-terminal domain, regulatory subdomain VagYM4_27870 IPR014762 DNA mismatch repair, conserved site VagYM4_27870 IPR042120 MutL, C-terminal domain, dimerisation subdomain VagYM4_27870 IPR037198 MutL, C-terminal domain superfamily VagYM4_27870 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_27870 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_27870 IPR014790 MutL, C-terminal, dimerisation VagYM4_27870 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_27870 IPR013507 DNA mismatch repair protein, S5 domain 2-like VagYM4_27870 IPR002099 DNA mismatch repair protein family, N-terminal VagYM4_27870 IPR020667 DNA mismatch repair protein, MutL VagYM4_27870 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms VagYM4_27880 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain VagYM4_27890 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE VagYM4_27890 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27900 IPR004453 Epoxyqueuosine reductase QueG VagYM4_27900 IPR013542 Domain of unknown function DUF1730 VagYM4_27900 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_27900 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_27910 IPR013520 Exonuclease, RNase T/DNA polymerase III VagYM4_27910 IPR012337 Ribonuclease H-like superfamily VagYM4_27910 IPR036397 Ribonuclease H superfamily VagYM4_27910 IPR022894 Oligoribonuclease VagYM4_27920 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain VagYM4_27920 IPR004881 Ribosome biogenesis GTPase RsgA VagYM4_27920 IPR010914 RsgA GTPase domain VagYM4_27920 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_27930 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 VagYM4_27930 IPR033177 Phosphatidylserine decarboxylase VagYM4_27930 IPR003817 Phosphatidylserine decarboxylase-related VagYM4_27940 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_27940 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_27940 IPR031312 Sodium/sulphate symporter, conserved site VagYM4_27940 IPR004680 Citrate transporter-like domain VagYM4_27960 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent VagYM4_27960 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_27960 IPR011258 BPG-independent PGAM, N-terminal VagYM4_27960 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily VagYM4_27960 IPR006124 Metalloenzyme VagYM4_27970 IPR036873 Rhodanese-like domain superfamily VagYM4_27970 IPR001763 Rhodanese-like domain VagYM4_27980 IPR035958 SecB-like superfamily VagYM4_27980 IPR003708 Bacterial protein export chaperone SecB VagYM4_27990 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal VagYM4_27990 IPR036291 NAD(P)-binding domain superfamily VagYM4_27990 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent VagYM4_27990 IPR013328 6-phosphogluconate dehydrogenase, domain 2 VagYM4_27990 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_27990 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal VagYM4_28000 IPR042122 Serine acetyltransferase, N-terminal domain superfamily VagYM4_28000 IPR005881 Serine O-acetyltransferase VagYM4_28000 IPR018357 Hexapeptide transferase, conserved site VagYM4_28000 IPR001451 Hexapeptide repeat VagYM4_28000 IPR010493 Serine acetyltransferase, N-terminal VagYM4_28000 IPR011004 Trimeric LpxA-like superfamily VagYM4_28010 IPR011055 Duplicated hybrid motif VagYM4_28010 IPR016047 Peptidase M23 VagYM4_28030 IPR009057 Homeobox-like domain superfamily VagYM4_28030 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VagYM4_28030 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_28030 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_28030 IPR013571 Transcription regulator QacR, C-terminal VagYM4_28050 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) VagYM4_28050 IPR004525 Elongation factor P--(R)-beta-lysine ligase VagYM4_28050 IPR006195 Aminoacyl-tRNA synthetase, class II VagYM4_28060 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily VagYM4_28060 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_28060 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site VagYM4_28060 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily VagYM4_28060 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal VagYM4_28060 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain VagYM4_28060 IPR005884 Fumarate reductase, flavoprotein subunit VagYM4_28060 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit VagYM4_28070 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site VagYM4_28070 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_28070 IPR012675 Beta-grasp domain superfamily VagYM4_28070 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_28070 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal VagYM4_28070 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_28070 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein VagYM4_28070 IPR009051 Alpha-helical ferredoxin VagYM4_28070 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_28080 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit VagYM4_28080 IPR003510 Fumarate reductase, subunit C VagYM4_28090 IPR003418 Fumarate reductase, subunit D VagYM4_28090 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit VagYM4_28110 IPR020599 Translation elongation factor P/YeiP VagYM4_28110 IPR012340 Nucleic acid-binding, OB-fold VagYM4_28110 IPR001059 Translation elongation factor P/YeiP, central VagYM4_28110 IPR013852 Translation elongation factor P/YeiP, conserved site VagYM4_28110 IPR013185 Translation elongation factor, KOW-like VagYM4_28110 IPR011768 Translation elongation factor P VagYM4_28110 IPR008991 Translation protein SH3-like domain superfamily VagYM4_28110 IPR014722 Ribosomal protein L2, domain 2 VagYM4_28110 IPR015365 Elongation factor P, C-terminal VagYM4_28120 IPR013785 Aldolase-type TIM barrel VagYM4_28120 IPR022462 Lysine-2,3-aminomutase-like VagYM4_28120 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase VagYM4_28120 IPR007197 Radical SAM VagYM4_28130 IPR003416 MgtC/SapB/SrpB/YhiD family VagYM4_28150 IPR001844 Chaperonin Cpn60 VagYM4_28150 IPR002423 Chaperonin Cpn60/TCP-1 family VagYM4_28150 IPR027409 GroEL-like apical domain superfamily VagYM4_28150 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VagYM4_28150 IPR018370 Chaperonin Cpn60, conserved site VagYM4_28150 IPR027413 GroEL-like equatorial domain superfamily VagYM4_28160 IPR037124 GroES chaperonin superfamily VagYM4_28160 IPR020818 GroES chaperonin family VagYM4_28160 IPR018369 Chaperonin GroES, conserved site VagYM4_28160 IPR011032 GroES-like superfamily VagYM4_28170 IPR002528 Multi antimicrobial extrusion protein VagYM4_28180 IPR000023 Phosphofructokinase domain VagYM4_28180 IPR022953 ATP-dependent 6-phosphofructokinase VagYM4_28180 IPR035966 Phosphofructokinase superfamily VagYM4_28180 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type VagYM4_28180 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic VagYM4_28180 IPR015912 Phosphofructokinase, conserved site VagYM4_28190 IPR027469 Cation efflux transmembrane domain superfamily VagYM4_28190 IPR036837 Cation efflux protein, cytoplasmic domain superfamily VagYM4_28190 IPR002524 Cation efflux protein VagYM4_28190 IPR027470 Cation efflux protein, cytoplasmic domain VagYM4_28190 IPR023783 Cation efflux pump FieF VagYM4_28210 IPR011006 CheY-like superfamily VagYM4_28210 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_28210 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_28210 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_28210 IPR001789 Signal transduction response regulator, receiver domain VagYM4_28220 IPR003660 HAMP domain VagYM4_28220 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_28220 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_28220 IPR038515 CpxA, periplasmic domain superfamily VagYM4_28220 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_28220 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_28220 IPR032404 Two-component sensor protein CpxA, periplasmic domain VagYM4_28220 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_28220 IPR005467 Histidine kinase domain VagYM4_28230 IPR001189 Manganese/iron superoxide dismutase VagYM4_28230 IPR019833 Manganese/iron superoxide dismutase, binding site VagYM4_28230 IPR019832 Manganese/iron superoxide dismutase, C-terminal VagYM4_28230 IPR019831 Manganese/iron superoxide dismutase, N-terminal VagYM4_28230 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily VagYM4_28230 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily VagYM4_28240 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_28240 IPR029028 Alpha/beta knot methyltransferases VagYM4_28240 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase VagYM4_28240 IPR001537 tRNA/rRNA methyltransferase, SpoU type VagYM4_28250 IPR007313 FxsA cytoplasmic membrane protein VagYM4_28260 IPR020557 Fumarate lyase, conserved site VagYM4_28260 IPR024083 Fumarase/histidase, N-terminal VagYM4_28260 IPR008948 L-Aspartase-like VagYM4_28260 IPR022761 Fumarate lyase, N-terminal VagYM4_28260 IPR018951 Fumarase C, C-terminal VagYM4_28260 IPR000362 Fumarate lyase family VagYM4_28260 IPR004708 Aspartate ammonia-lyase VagYM4_28270 IPR004668 Anaerobic c4-dicarboxylate membrane transporter VagYM4_28280 IPR035671 DsbD gamma VagYM4_28280 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain VagYM4_28280 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily VagYM4_28280 IPR022910 Thiol:disulphide interchange protein DsbD VagYM4_28280 IPR036249 Thioredoxin-like superfamily VagYM4_28280 IPR017937 Thioredoxin, conserved site VagYM4_28280 IPR013766 Thioredoxin domain VagYM4_28280 IPR003834 Cytochrome C biogenesis protein, transmembrane domain VagYM4_28290 IPR001789 Signal transduction response regulator, receiver domain VagYM4_28290 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_28290 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_28290 IPR011006 CheY-like superfamily VagYM4_28300 IPR005170 Transporter-associated domain VagYM4_28300 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_28300 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_28300 IPR023729 K(+)/H(+) antiporter NhaP2 VagYM4_28300 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_28300 IPR038770 Sodium/solute symporter superfamily VagYM4_28300 IPR016169 FAD-binding, type PCMH, subdomain 2 VagYM4_28300 IPR006153 Cation/H+ exchanger VagYM4_28300 IPR030151 K(+)/H(+) antiporter NhaP VagYM4_28320 IPR038377 Sodium/glucose symporter superfamily VagYM4_28320 IPR001734 Sodium/solute symporter VagYM4_28320 IPR019899 Sodium/solute symporter, VC2705 subfamily VagYM4_28350 IPR005677 Fumarate hydratase, class II VagYM4_28350 IPR024083 Fumarase/histidase, N-terminal VagYM4_28350 IPR008948 L-Aspartase-like VagYM4_28350 IPR018951 Fumarase C, C-terminal VagYM4_28350 IPR020557 Fumarate lyase, conserved site VagYM4_28350 IPR000362 Fumarate lyase family VagYM4_28350 IPR022761 Fumarate lyase, N-terminal VagYM4_28360 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_28360 IPR015387 LuxQ, periplasmic VagYM4_28360 IPR001789 Signal transduction response regulator, receiver domain VagYM4_28360 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_28360 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_28360 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_28360 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_28360 IPR005467 Histidine kinase domain VagYM4_28360 IPR011006 CheY-like superfamily VagYM4_28360 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_28370 IPR036259 MFS transporter superfamily VagYM4_28370 IPR024989 Major facilitator superfamily associated domain VagYM4_28370 IPR026032 Probable 3-phenylpropionic acid transporter VagYM4_28400 IPR011904 Acetate-CoA ligase VagYM4_28400 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain VagYM4_28400 IPR025110 AMP-binding enzyme, C-terminal domain VagYM4_28400 IPR020845 AMP-binding, conserved site VagYM4_28400 IPR000873 AMP-dependent synthetase/ligase VagYM4_28400 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_28410 IPR036441 Dehydroquinase, class II superfamily VagYM4_28410 IPR018509 Dehydroquinase, class II, conserved site VagYM4_28410 IPR001874 Dehydroquinase, class II VagYM4_28420 IPR000089 Biotin/lipoyl attachment VagYM4_28420 IPR001882 Biotin-binding site VagYM4_28420 IPR001249 Acetyl-CoA biotin carboxyl carrier VagYM4_28420 IPR011053 Single hybrid motif VagYM4_28430 IPR011764 Biotin carboxylation domain VagYM4_28430 IPR011054 Rudiment single hybrid motif VagYM4_28430 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain VagYM4_28430 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_28430 IPR005482 Biotin carboxylase, C-terminal VagYM4_28430 IPR005481 Biotin carboxylase-like, N-terminal domain VagYM4_28430 IPR011761 ATP-grasp fold VagYM4_28430 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase VagYM4_28430 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_28440 IPR004498 Ribosomal protein L11 methyltransferase VagYM4_28440 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_28450 IPR018517 tRNA-dihydrouridine synthase, conserved site VagYM4_28450 IPR001269 tRNA-dihydrouridine synthase VagYM4_28450 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal VagYM4_28450 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 VagYM4_28450 IPR032887 tRNA-dihydrouridine synthase B VagYM4_28450 IPR035587 DUS-like, FMN-binding domain VagYM4_28450 IPR013785 Aldolase-type TIM barrel VagYM4_28460 IPR002197 DNA binding HTH domain, Fis-type VagYM4_28460 IPR005412 DNA-binding protein Fis VagYM4_28460 IPR009057 Homeobox-like domain superfamily VagYM4_28480 IPR032781 ABC-transporter extension domain VagYM4_28480 IPR017871 ABC transporter, conserved site VagYM4_28480 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_28480 IPR003593 AAA+ ATPase domain VagYM4_28480 IPR003439 ABC transporter-like VagYM4_28490 IPR000310 Orn/Lys/Arg decarboxylase, major domain VagYM4_28490 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal VagYM4_28490 IPR011193 Ornithine/lysine/arginine decarboxylase VagYM4_28490 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal VagYM4_28490 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_28490 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily VagYM4_28490 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_28490 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_28500 IPR004754 Amino acid antiporter VagYM4_28500 IPR002293 Amino acid/polyamine transporter I VagYM4_28520 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_28520 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_28520 IPR040970 CadC C-terminal domain 1 VagYM4_28520 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_28520 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_28520 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_28530 IPR009061 Putative DNA-binding domain superfamily VagYM4_28530 IPR000551 MerR-type HTH domain VagYM4_28530 IPR011788 Zn(II)-responsive transcriptional regulator VagYM4_28540 IPR011607 Methylglyoxal synthase-like domain VagYM4_28540 IPR016193 Cytidine deaminase-like VagYM4_28540 IPR036914 Methylglyoxal synthase-like domain superfamily VagYM4_28540 IPR002695 Bifunctional purine biosynthesis protein PurH-like VagYM4_28540 IPR024051 AICAR transformylase, duplicated domain superfamily VagYM4_28550 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_28550 IPR011761 ATP-grasp fold VagYM4_28550 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VagYM4_28550 IPR000115 Phosphoribosylglycinamide synthetase VagYM4_28550 IPR011054 Rudiment single hybrid motif VagYM4_28550 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal VagYM4_28550 IPR020560 Phosphoribosylglycinamide synthetase, C-domain VagYM4_28550 IPR020559 Phosphoribosylglycinamide synthetase, conserved site VagYM4_28550 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily VagYM4_28550 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_28570 IPR000119 Histone-like DNA-binding protein VagYM4_28570 IPR020816 Histone-like DNA-binding protein, conserved site VagYM4_28570 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily VagYM4_28580 IPR002550 CNNM, transmembrane domain VagYM4_28580 IPR000644 CBS domain VagYM4_28590 IPR023381 YP001051499.1-like domain superfamily VagYM4_28590 IPR007338 Protein of unknown function DUF416 VagYM4_28600 IPR023514 Glyoxylate/hydroxypyruvate reductase A VagYM4_28600 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain VagYM4_28600 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VagYM4_28600 IPR036291 NAD(P)-binding domain superfamily VagYM4_28610 IPR036895 Uracil-DNA glycosylase-like domain superfamily VagYM4_28610 IPR005122 Uracil-DNA glycosylase-like VagYM4_28620 IPR000257 Uroporphyrinogen decarboxylase (URO-D) VagYM4_28620 IPR038071 UROD/MetE-like superfamily VagYM4_28620 IPR006361 Uroporphyrinogen decarboxylase HemE VagYM4_28630 IPR020084 NUDIX hydrolase, conserved site VagYM4_28630 IPR015376 Zinc ribbon, NADH pyrophosphatase VagYM4_28630 IPR000086 NUDIX hydrolase domain VagYM4_28630 IPR015797 NUDIX hydrolase-like domain superfamily VagYM4_28630 IPR022925 NADH pyrophosphatase NudC VagYM4_28640 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd VagYM4_28640 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VagYM4_28640 IPR038309 Rsd/AlgQ superfamily VagYM4_28650 IPR007066 RNA polymerase Rpb1, domain 3 VagYM4_28650 IPR007081 RNA polymerase Rpb1, domain 5 VagYM4_28650 IPR007080 RNA polymerase Rpb1, domain 1 VagYM4_28650 IPR038120 RNA polymerase Rpb1, funnel domain superfamily VagYM4_28650 IPR006592 RNA polymerase, N-terminal VagYM4_28650 IPR007083 RNA polymerase Rpb1, domain 4 VagYM4_28650 IPR012754 DNA-directed RNA polymerase, subunit beta-prime VagYM4_28650 IPR000722 RNA polymerase, alpha subunit VagYM4_28650 IPR042102 RNA polymerase Rpb1, domain 3 superfamily VagYM4_28660 IPR007641 RNA polymerase Rpb2, domain 7 VagYM4_28660 IPR007642 RNA polymerase Rpb2, domain 2 VagYM4_28660 IPR037034 RNA polymerase Rpb2, domain 2 superfamily VagYM4_28660 IPR007645 RNA polymerase Rpb2, domain 3 VagYM4_28660 IPR007121 RNA polymerase, beta subunit, conserved site VagYM4_28660 IPR015712 DNA-directed RNA polymerase, subunit 2 VagYM4_28660 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain VagYM4_28660 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily VagYM4_28660 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type VagYM4_28660 IPR014724 RNA polymerase Rpb2, OB-fold VagYM4_28660 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain VagYM4_28660 IPR007644 RNA polymerase, beta subunit, protrusion VagYM4_28670 IPR000206 Ribosomal protein L7/L12 VagYM4_28670 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like VagYM4_28670 IPR013823 Ribosomal protein L7/L12, C-terminal VagYM4_28670 IPR008932 Ribosomal protein L7/L12, oligomerisation VagYM4_28670 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily VagYM4_28680 IPR022973 Ribosomal protein L10 VagYM4_28680 IPR001790 Ribosomal protein L10P VagYM4_28690 IPR023673 Ribosomal protein L1, conserved site VagYM4_28690 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich VagYM4_28690 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein VagYM4_28690 IPR023674 Ribosomal protein L1-like VagYM4_28690 IPR002143 Ribosomal protein L1 VagYM4_28690 IPR005878 Ribosomal protein L1, bacterial-type VagYM4_28700 IPR020785 Ribosomal protein L11, conserved site VagYM4_28700 IPR020784 Ribosomal protein L11, N-terminal VagYM4_28700 IPR020783 Ribosomal protein L11, C-terminal VagYM4_28700 IPR036769 Ribosomal protein L11, C-terminal domain superfamily VagYM4_28700 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily VagYM4_28700 IPR006519 Ribosomal protein L11, bacterial-type VagYM4_28700 IPR000911 Ribosomal protein L11/L12 VagYM4_28710 IPR008991 Translation protein SH3-like domain superfamily VagYM4_28710 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site VagYM4_28710 IPR001062 Transcription antitermination protein, NusG VagYM4_28710 IPR014722 Ribosomal protein L2, domain 2 VagYM4_28710 IPR036735 NusG, N-terminal domain superfamily VagYM4_28710 IPR006645 NusG, N-terminal VagYM4_28710 IPR005824 KOW VagYM4_28720 IPR005807 SecE subunit of protein translocation complex, bacterial-like VagYM4_28720 IPR038379 SecE superfamily VagYM4_28720 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit VagYM4_28730 IPR031157 Tr-type G domain, conserved site VagYM4_28730 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_28730 IPR005225 Small GTP-binding protein domain VagYM4_28730 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle VagYM4_28730 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain VagYM4_28730 IPR000795 Transcription factor, GTP-binding domain VagYM4_28730 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_28730 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal VagYM4_28730 IPR033720 Elongation factor Tu, domain 2 VagYM4_28730 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal VagYM4_28730 IPR004161 Translation elongation factor EFTu-like, domain 2 VagYM4_28740 IPR004566 Pantothenate kinase VagYM4_28740 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_28740 IPR006083 Phosphoribulokinase/uridine kinase VagYM4_28750 IPR013196 Helix-turn-helix, type 11 VagYM4_28750 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_28750 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_28750 IPR004409 Biotin operon repressor, helix-turn-helix domain VagYM4_28750 IPR030855 Bifunctional ligase/repressor BirA VagYM4_28750 IPR004408 Biotin--acetyl-CoA-carboxylase ligase VagYM4_28750 IPR003142 Biotin protein ligase, C-terminal VagYM4_28750 IPR008988 Transcriptional repressor, C-terminal VagYM4_28750 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain VagYM4_28760 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily VagYM4_28760 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_28760 IPR016166 FAD-binding domain, PCMH-type VagYM4_28760 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal VagYM4_28760 IPR006094 FAD linked oxidase, N-terminal VagYM4_28760 IPR016167 FAD-binding, type PCMH, subdomain 1 VagYM4_28760 IPR016169 FAD-binding, type PCMH, subdomain 2 VagYM4_28760 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase VagYM4_28780 IPR025202 Phospholipase D-like domain VagYM4_28780 IPR016270 CDP-alcohol phosphatidyltransferase class-II family VagYM4_28780 IPR001736 Phospholipase D/Transphosphatidylase VagYM4_28800 IPR018187 Asp/Glu racemase, active site 1 VagYM4_28800 IPR004391 Glutamate racemase VagYM4_28800 IPR015942 Asp/Glu/hydantoin racemase VagYM4_28800 IPR001920 Asp/Glu racemase VagYM4_28820 IPR010916 TonB box, conserved site VagYM4_28820 IPR039426 Vitamin B12 transporter BtuB-like VagYM4_28820 IPR012910 TonB-dependent receptor, plug domain VagYM4_28820 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_28820 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_28820 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_28820 IPR010101 TonB-dependent vitamin B12 transporter BtuB VagYM4_28820 IPR010917 TonB-dependent receptor, conserved site VagYM4_28830 IPR030391 RNA methyltransferase TrmA, conserved site VagYM4_28830 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA VagYM4_28830 IPR030390 RNA methyltransferase TrmA, active site VagYM4_28830 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_28830 IPR010280 (Uracil-5)-methyltransferase family VagYM4_28850 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_28850 IPR009057 Homeobox-like domain superfamily VagYM4_28850 IPR023764 Transcriptional repressor HTH, FabR VagYM4_28860 IPR022962 Soluble pyridine nucleotide transhydrogenase VagYM4_28860 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_28860 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_28860 IPR023753 FAD/NAD(P)-binding domain VagYM4_28860 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily VagYM4_28860 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I VagYM4_28870 IPR002528 Multi antimicrobial extrusion protein VagYM4_28880 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp VagYM4_28880 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_28880 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP VagYM4_28890 IPR006197 Peptidase S24, LexA-like VagYM4_28890 IPR039418 LexA-like VagYM4_28890 IPR036286 LexA/Signal peptidase-like superfamily VagYM4_28890 IPR006199 LexA repressor, DNA-binding domain VagYM4_28890 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_28890 IPR006200 Transcription regulator LexA VagYM4_28890 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_28890 IPR015927 Peptidase S24/S26A/S26B/S26C VagYM4_28900 IPR002123 Phospholipid/glycerol acyltransferase VagYM4_28900 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB VagYM4_28900 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase VagYM4_28900 IPR041728 GPAT/DHAPAT, acyltransferase domain VagYM4_28910 IPR006370 4-hydroxybenzoate polyprenyltransferase-like VagYM4_28910 IPR039653 Prenyltransferase VagYM4_28910 IPR000537 UbiA prenyltransferase family VagYM4_28920 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VagYM4_28920 IPR007440 Chorismate--pyruvate lyase VagYM4_28930 IPR005503 Flagellar basal body-associated protein FliL VagYM4_28940 IPR023662 Rhomboid protease GlpG VagYM4_28940 IPR038236 GlpG peptidase, N-terminal domain superfamily VagYM4_28940 IPR022732 Peptidase S54, GlpG peptidase, N-terminal VagYM4_28940 IPR022764 Peptidase S54, rhomboid domain VagYM4_28940 IPR035952 Rhomboid-like superfamily VagYM4_28950 IPR023695 Thiosulfate sulfurtransferase, bacterial VagYM4_28950 IPR001763 Rhodanese-like domain VagYM4_28950 IPR036873 Rhodanese-like domain superfamily VagYM4_28960 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_28960 IPR007630 RNA polymerase sigma-70 region 4 VagYM4_28960 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_28960 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_28960 IPR000943 RNA polymerase sigma-70 VagYM4_28960 IPR014284 RNA polymerase sigma-70 like domain VagYM4_28960 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria VagYM4_28960 IPR009042 RNA polymerase sigma-70 region 1.2 VagYM4_28970 IPR004513 Cell division protein FtsX VagYM4_28970 IPR040690 FtsX, extracellular domain VagYM4_28980 IPR005286 Cell division protein FtsE, ATP-binding VagYM4_28980 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_28980 IPR003439 ABC transporter-like VagYM4_28980 IPR003593 AAA+ ATPase domain VagYM4_28980 IPR017871 ABC transporter, conserved site VagYM4_28990 IPR013822 Signal recognition particle SRP54, helical bundle VagYM4_28990 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_28990 IPR003593 AAA+ ATPase domain VagYM4_28990 IPR004390 Signal-recognition particle receptor FtsY VagYM4_28990 IPR036225 SRP/SRP receptor, N-terminal VagYM4_28990 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain VagYM4_28990 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily VagYM4_29000 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_29000 IPR004398 RNA methyltransferase, RsmD VagYM4_29000 IPR002052 DNA methylase, N-6 adenine-specific, conserved site VagYM4_29020 IPR002771 Multiple antibiotic resistance (MarC)-related VagYM4_29070 IPR019635 Protein of unknown function DUF2500 VagYM4_29110 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain VagYM4_29110 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family VagYM4_29110 IPR036291 NAD(P)-binding domain superfamily VagYM4_29110 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I VagYM4_29110 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain VagYM4_29110 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site VagYM4_29120 IPR001845 HTH ArsR-type DNA-binding domain VagYM4_29120 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_29120 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_29120 IPR011991 ArsR-like helix-turn-helix domain VagYM4_29130 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing VagYM4_29130 IPR001633 EAL domain VagYM4_29130 IPR035919 EAL domain superfamily VagYM4_29130 IPR013976 Metal-dependent hydrolase HDOD VagYM4_29140 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_29150 IPR022742 Serine aminopeptidase, S33 VagYM4_29150 IPR029058 Alpha/Beta hydrolase fold VagYM4_29160 IPR023214 HAD superfamily VagYM4_29160 IPR006379 HAD-superfamily hydrolase, subfamily IIB VagYM4_29160 IPR036412 HAD-like superfamily VagYM4_29160 IPR000150 Cof family VagYM4_29200 IPR013702 FIST domain, N-terminal VagYM4_29200 IPR001633 EAL domain VagYM4_29200 IPR019494 FIST, C-domain VagYM4_29200 IPR000160 GGDEF domain VagYM4_29200 IPR029787 Nucleotide cyclase VagYM4_29200 IPR035919 EAL domain superfamily VagYM4_29210 IPR023214 HAD superfamily VagYM4_29210 IPR041492 Haloacid dehalogenase-like hydrolase VagYM4_29210 IPR006439 HAD hydrolase, subfamily IA VagYM4_29210 IPR036412 HAD-like superfamily VagYM4_29220 IPR011010 DNA breaking-rejoining enzyme, catalytic core VagYM4_29220 IPR013762 Integrase-like, catalytic domain superfamily VagYM4_29220 IPR002104 Integrase, catalytic domain VagYM4_29220 IPR004107 Integrase, SAM-like, N-terminal VagYM4_29220 IPR011931 Tyrosine recombinase XerC VagYM4_29220 IPR023009 Tyrosine recombinase XerC/XerD VagYM4_29220 IPR010998 Integrase/recombinase, N-terminal VagYM4_29240 IPR001653 Diaminopimelate epimerase, DapF VagYM4_29240 IPR018510 Diaminopimelate epimerase, active site VagYM4_29250 IPR029066 PLP-binding barrel VagYM4_29250 IPR000183 Ornithine/DAP/Arg decarboxylase VagYM4_29250 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site VagYM4_29250 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal VagYM4_29250 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site VagYM4_29250 IPR002986 Diaminopimelate decarboxylase, LysA VagYM4_29250 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal VagYM4_29250 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal VagYM4_29260 IPR002908 Frataxin/CyaY VagYM4_29260 IPR036524 Frataxin/CyaY superfamily VagYM4_29260 IPR020895 Frataxin conserved site VagYM4_29280 IPR000274 Adenylate cyclase, class-I VagYM4_29280 IPR024686 Adenylate cyclase class-I, conserved site VagYM4_29280 IPR024685 Adenylate cyclase class-I, N-terminal domain VagYM4_29290 IPR022418 Porphobilinogen deaminase, C-terminal VagYM4_29290 IPR000860 Porphobilinogen deaminase VagYM4_29290 IPR022417 Porphobilinogen deaminase, N-terminal VagYM4_29290 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site VagYM4_29290 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily VagYM4_29300 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase VagYM4_29300 IPR039793 Uroporphyrinogen-III synthase VagYM4_29300 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily VagYM4_29310 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX VagYM4_29320 IPR005254 Heme biosynthesis-associated TPR protein VagYM4_29320 IPR010817 HemY, N-terminal VagYM4_29320 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_29330 IPR001433 Oxidoreductase FAD/NAD(P)-binding VagYM4_29330 IPR017927 FAD-binding domain, ferredoxin reductase-type VagYM4_29330 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VagYM4_29330 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_29340 IPR018298 Adrenodoxin, iron-sulphur binding site VagYM4_29340 IPR001055 Adrenodoxin VagYM4_29340 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_29340 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_29340 IPR012675 Beta-grasp domain superfamily VagYM4_29340 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria VagYM4_29350 IPR002830 UbiD decarboxylyase family VagYM4_29370 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_29370 IPR012340 Nucleic acid-binding, OB-fold VagYM4_29370 IPR011129 Cold shock domain VagYM4_29370 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain VagYM4_29370 IPR003593 AAA+ ATPase domain VagYM4_29370 IPR011112 Rho termination factor, N-terminal VagYM4_29370 IPR036269 Rho termination factor, N-terminal domain superfamily VagYM4_29370 IPR011113 Rho termination factor, RNA-binding domain VagYM4_29370 IPR004665 Transcription termination factor Rho VagYM4_29370 IPR041703 Transcription termination factor Rho, ATP binding domain VagYM4_29380 IPR036249 Thioredoxin-like superfamily VagYM4_29380 IPR017937 Thioredoxin, conserved site VagYM4_29380 IPR013766 Thioredoxin domain VagYM4_29380 IPR005746 Thioredoxin VagYM4_29390 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_29390 IPR011545 DEAD/DEAH box helicase domain VagYM4_29390 IPR001650 Helicase, C-terminal VagYM4_29390 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_29390 IPR023554 ATP-dependent RNA helicase RhlB type VagYM4_29390 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_29390 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_29400 IPR030673 Pyrophosphatase, GppA/Ppx-type VagYM4_29400 IPR003695 Ppx/GppA phosphatase VagYM4_29400 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase VagYM4_29410 IPR003744 Queuosine precursor transporter VagYM4_29430 IPR002121 HRDC domain VagYM4_29430 IPR004589 DNA helicase, ATP-dependent, RecQ type VagYM4_29430 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_29430 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial VagYM4_29430 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_29430 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_29430 IPR018982 RQC domain VagYM4_29430 IPR001650 Helicase, C-terminal VagYM4_29430 IPR010997 HRDC-like superfamily VagYM4_29430 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain VagYM4_29430 IPR011545 DEAD/DEAH box helicase domain VagYM4_29440 IPR000620 EamA domain VagYM4_29440 IPR004626 RarD protein VagYM4_29460 IPR004778 Homoserine/Threonine efflux protein VagYM4_29460 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_29470 IPR000101 Gamma-glutamyltranspeptidase VagYM4_29470 IPR029055 Nucleophile aminohydrolases, N-terminal VagYM4_29490 IPR013986 DExx box DNA helicase domain superfamily VagYM4_29490 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_29490 IPR000212 DNA helicase, UvrD/REP type VagYM4_29490 IPR014016 UvrD-like helicase, ATP-binding domain VagYM4_29490 IPR034739 UvrD/AddA helicase, N-terminal VagYM4_29490 IPR014017 UvrD-like DNA helicase, C-terminal VagYM4_29490 IPR005753 DNA helicase, ATP-dependent, UvrD type VagYM4_29510 IPR036237 Xylose isomerase-like superfamily VagYM4_29510 IPR007801 Uncharacterised protein family UPF0276 VagYM4_29550 IPR020846 Major facilitator superfamily domain VagYM4_29550 IPR036259 MFS transporter superfamily VagYM4_29550 IPR023697 Multidrug resistance protein MdtL VagYM4_29550 IPR011701 Major facilitator superfamily VagYM4_29560 IPR037402 HTH-type transcriptional regulator YidZ, PBP2 domain VagYM4_29560 IPR005119 LysR, substrate-binding VagYM4_29560 IPR000847 Transcription regulator HTH, LysR VagYM4_29560 IPR023746 Transcription regulator HTH, YidZ VagYM4_29560 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_29560 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_29570 IPR000587 Creatinase, N-terminal VagYM4_29570 IPR000994 Peptidase M24 VagYM4_29570 IPR001714 Peptidase M24, methionine aminopeptidase VagYM4_29570 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site VagYM4_29570 IPR000587 Creatinase, N-terminal VagYM4_29570 IPR036005 Creatinase/aminopeptidase-like VagYM4_29570 IPR036005 Creatinase/aminopeptidase-like VagYM4_29570 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VagYM4_29570 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VagYM4_29570 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site VagYM4_29570 IPR000994 Peptidase M24 VagYM4_29570 IPR001714 Peptidase M24, methionine aminopeptidase VagYM4_29580 IPR012726 Thiazole biosynthesis ThiH VagYM4_29580 IPR034428 ThiH/NocL/HydG-like VagYM4_29580 IPR010722 Biotin and thiamin synthesis-associated domain VagYM4_29580 IPR013785 Aldolase-type TIM barrel VagYM4_29580 IPR007197 Radical SAM VagYM4_29590 IPR008867 Thiazole synthase VagYM4_29590 IPR033983 Thiazole synthase ThiG VagYM4_29590 IPR013785 Aldolase-type TIM barrel VagYM4_29610 IPR035985 Ubiquitin-activating enzyme VagYM4_29610 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF VagYM4_29610 IPR000594 THIF-type NAD/FAD binding fold VagYM4_29620 IPR013785 Aldolase-type TIM barrel VagYM4_29620 IPR036206 Thiamin phosphate synthase superfamily VagYM4_29620 IPR034291 Thiamine phosphate synthase VagYM4_29620 IPR022998 Thiamine phosphate synthase/TenI VagYM4_29630 IPR037509 Phosphomethylpyrimidine synthase VagYM4_29630 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B VagYM4_29630 IPR025747 ThiC-associated domain VagYM4_29630 IPR038521 ThiC/Bza superfamily VagYM4_29640 IPR003691 Putative fluoride ion transporter CrcB VagYM4_29650 IPR001117 Multicopper oxidase, type 1 VagYM4_29650 IPR034282 Copper resistance protein CopA, second cupredoxin domain VagYM4_29650 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VagYM4_29650 IPR011706 Multicopper oxidase, type 2 VagYM4_29650 IPR006376 Copper-resistance protein CopA VagYM4_29650 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_29650 IPR002355 Multicopper oxidase, copper-binding site VagYM4_29650 IPR011707 Multicopper oxidase, type 3 VagYM4_29650 IPR034284 Copper resistance protein, first cupredoxin domain VagYM4_29650 IPR008972 Cupredoxin VagYM4_29650 IPR033138 Multicopper oxidases, conserved site VagYM4_29650 IPR034279 Copper resistance protein, third cupredoxin domain VagYM4_29660 IPR011004 Trimeric LpxA-like superfamily VagYM4_29660 IPR001451 Hexapeptide repeat VagYM4_29670 IPR036692 Shew3726-like superfamily VagYM4_29670 IPR009962 Protein of unknown function DUF1488 VagYM4_29680 IPR041121 SDH, C-terminal VagYM4_29680 IPR011342 Shikimate dehydrogenase VagYM4_29680 IPR022893 Shikimate dehydrogenase family VagYM4_29680 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal VagYM4_29680 IPR036291 NAD(P)-binding domain superfamily VagYM4_29680 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase VagYM4_29690 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily VagYM4_29690 IPR001260 Coproporphyrinogen III oxidase, aerobic VagYM4_29690 IPR018375 Coproporphyrinogen III oxidase, conserved site VagYM4_29700 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VagYM4_29700 IPR023535 Threonylcarbamoyl-AMP synthase VagYM4_29700 IPR006070 YrdC-like domain VagYM4_29710 IPR035893 PurE domain superfamily VagYM4_29710 IPR033747 Class I PurE VagYM4_29710 IPR024694 PurE, prokaryotic type VagYM4_29710 IPR000031 PurE domain VagYM4_29720 IPR011054 Rudiment single hybrid motif VagYM4_29720 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_29720 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_29720 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit VagYM4_29720 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain VagYM4_29720 IPR011761 ATP-grasp fold VagYM4_29720 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type VagYM4_29730 IPR000380 DNA topoisomerase, type IA VagYM4_29730 IPR013498 DNA topoisomerase, type IA, zn finger VagYM4_29740 IPR007456 Smg VagYM4_29750 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_29750 IPR041614 DprA, winged helix domain VagYM4_29750 IPR003488 DNA recombination-mediator protein A VagYM4_29770 IPR023635 Peptide deformylase VagYM4_29770 IPR036821 Peptide deformylase superfamily VagYM4_29780 IPR011034 Formyl transferase-like, C-terminal domain superfamily VagYM4_29780 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain VagYM4_29780 IPR036477 Formyl transferase, N-terminal domain superfamily VagYM4_29780 IPR002376 Formyl transferase, N-terminal VagYM4_29780 IPR037022 Formyl transferase, C-terminal domain superfamily VagYM4_29780 IPR005793 Formyl transferase, C-terminal VagYM4_29780 IPR005794 Methionyl-tRNA formyltransferase VagYM4_29780 IPR001555 Phosphoribosylglycinamide formyltransferase, active site VagYM4_29790 IPR004573 rRNA small subunit methyltransferase B VagYM4_29790 IPR023267 RNA (C5-cytosine) methyltransferase VagYM4_29790 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_29790 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site VagYM4_29790 IPR006027 NusB/RsmB/TIM44 VagYM4_29790 IPR035926 NusB-like superfamily VagYM4_29790 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type VagYM4_29800 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type VagYM4_29800 IPR004573 rRNA small subunit methyltransferase B VagYM4_29800 IPR023267 RNA (C5-cytosine) methyltransferase VagYM4_29800 IPR006027 NusB/RsmB/TIM44 VagYM4_29800 IPR035926 NusB-like superfamily VagYM4_29800 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_29800 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site VagYM4_29810 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_29810 IPR006036 Potassium uptake protein TrkA VagYM4_29810 IPR003148 Regulator of K+ conductance, N-terminal VagYM4_29810 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_29810 IPR036291 NAD(P)-binding domain superfamily VagYM4_29820 IPR003445 Cation transporter VagYM4_29820 IPR004772 TrkH potassium transport family VagYM4_29840 IPR005744 Hly-III VagYM4_29840 IPR004254 AdipoR/Haemolysin-III-related VagYM4_29850 IPR009776 Sporulation stage 0, protein M VagYM4_29850 IPR014752 Arrestin, C-terminal VagYM4_29850 IPR014756 Immunoglobulin E-set VagYM4_29870 IPR009383 Protein of unknown function DUF1040 VagYM4_29870 IPR038134 YihD-like superfamily VagYM4_29880 IPR013783 Immunoglobulin-like fold VagYM4_29880 IPR032879 FixG, C-terminal immunoglobulin-like domain VagYM4_29880 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG VagYM4_29880 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_29880 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_29890 IPR032882 SrkA/RdoA protein kinase VagYM4_29890 IPR011009 Protein kinase-like domain superfamily VagYM4_29890 IPR002575 Aminoglycoside phosphotransferase VagYM4_29900 IPR001853 DSBA-like thioredoxin domain VagYM4_29900 IPR013766 Thioredoxin domain VagYM4_29900 IPR036249 Thioredoxin-like superfamily VagYM4_29900 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL VagYM4_29910 IPR002123 Phospholipid/glycerol acyltransferase VagYM4_29930 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_29930 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_29930 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_29930 IPR000523 Magnesium chelatase ChlI domain VagYM4_29930 IPR003593 AAA+ ATPase domain VagYM4_29930 IPR001208 MCM domain VagYM4_29930 IPR025158 Mg chelatase-related protein, C-terminal domain VagYM4_29930 IPR004482 Mg chelatase-related protein VagYM4_29940 IPR029035 DHS-like NAD/FAD-binding domain superfamily VagYM4_29940 IPR012000 Thiamine pyrophosphate enzyme, central domain VagYM4_29940 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding VagYM4_29940 IPR000399 TPP-binding enzyme, conserved site VagYM4_29940 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain VagYM4_29940 IPR012846 Acetolactate synthase, large subunit, biosynthetic VagYM4_29940 IPR039368 Acetolactate synthase large subunit, TPP binding domain VagYM4_29940 IPR029061 Thiamin diphosphate-binding fold VagYM4_29950 IPR002912 ACT domain VagYM4_29960 IPR036038 Aminotransferase-like, PLP-dependent enzymes VagYM4_29960 IPR001544 Aminotransferase class IV VagYM4_29960 IPR018300 Aminotransferase, class IV, conserved site VagYM4_29960 IPR005785 Branched-chain amino acid aminotransferase I VagYM4_29960 IPR033939 Branched-chain aminotransferase VagYM4_29970 IPR004404 Dihydroxy-acid dehydratase VagYM4_29970 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase VagYM4_29970 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site VagYM4_29970 IPR037237 IlvD/EDD, N-terminal domain VagYM4_29970 IPR042096 Dihydroxy-acid dehydratase, C-terminal VagYM4_29980 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VagYM4_29980 IPR005787 Threonine dehydratase, biosynthetic VagYM4_29980 IPR038110 Threonine dehydratase, ACT-like domain superfamily VagYM4_29980 IPR001721 Threonine dehydratase, ACT-like domain VagYM4_29980 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site VagYM4_29980 IPR001926 Pyridoxal-phosphate dependent enzyme VagYM4_29990 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_29990 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_29990 IPR000847 Transcription regulator HTH, LysR VagYM4_29990 IPR005119 LysR, substrate-binding VagYM4_30000 IPR036259 MFS transporter superfamily VagYM4_30000 IPR011701 Major facilitator superfamily VagYM4_30000 IPR004812 Drug resistance transporter Bcr/CmlA subfamily VagYM4_30000 IPR020846 Major facilitator superfamily domain VagYM4_30010 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_30010 IPR018313 Solute-binding protein family 3, conserved site VagYM4_30010 IPR037298 Cyclohexadienyl dehydratase pheC VagYM4_30020 IPR035906 MetI-like superfamily VagYM4_30020 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_30020 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain VagYM4_30030 IPR011004 Trimeric LpxA-like superfamily VagYM4_30030 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_30030 IPR025877 MobA-like NTP transferase VagYM4_30030 IPR018357 Hexapeptide transferase, conserved site VagYM4_30030 IPR038009 GlmU, C-terminal LbH domain VagYM4_30030 IPR001451 Hexapeptide repeat VagYM4_30030 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase VagYM4_30040 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain VagYM4_30040 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal VagYM4_30040 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit VagYM4_30040 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily VagYM4_30040 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal VagYM4_30050 IPR003593 AAA+ ATPase domain VagYM4_30050 IPR005722 ATP synthase, F1 complex, beta subunit VagYM4_30050 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site VagYM4_30050 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain VagYM4_30050 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily VagYM4_30050 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain VagYM4_30050 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal VagYM4_30050 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30060 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily VagYM4_30060 IPR000131 ATP synthase, F1 complex, gamma subunit VagYM4_30060 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site VagYM4_30070 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily VagYM4_30070 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30070 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain VagYM4_30070 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily VagYM4_30070 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily VagYM4_30070 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain VagYM4_30070 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site VagYM4_30070 IPR005294 ATP synthase, F1 complex, alpha subunit VagYM4_30070 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain VagYM4_30070 IPR000793 ATP synthase, alpha subunit, C-terminal VagYM4_30080 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily VagYM4_30080 IPR020781 ATPase, OSCP/delta subunit, conserved site VagYM4_30080 IPR000711 ATPase, OSCP/delta subunit VagYM4_30090 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily VagYM4_30090 IPR005864 ATP synthase, F0 complex, subunit b, bacterial VagYM4_30090 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast VagYM4_30100 IPR035921 F/V-ATP synthase subunit C superfamily VagYM4_30100 IPR002379 V-ATPase proteolipid subunit C-like domain VagYM4_30100 IPR038662 F1F0 ATP synthase subunit C superfamily VagYM4_30100 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site VagYM4_30100 IPR000454 ATP synthase, F0 complex, subunit C VagYM4_30100 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast VagYM4_30110 IPR000568 ATP synthase, F0 complex, subunit A VagYM4_30110 IPR023011 ATP synthase, F0 complex, subunit A, active site VagYM4_30110 IPR035908 ATP synthase, F0 complex, subunit A superfamily VagYM4_30120 IPR005598 ATP synthase protein I VagYM4_30130 IPR041468 ParB/Spo0J, HTH domain VagYM4_30130 IPR036086 ParB/Sulfiredoxin superfamily VagYM4_30130 IPR003115 ParB/Sulfiredoxin VagYM4_30130 IPR004437 ParB/RepB/Spo0J partition protein VagYM4_30140 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30140 IPR025669 AAA domain VagYM4_30150 IPR003682 rRNA small subunit methyltransferase G VagYM4_30150 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_30160 IPR020595 MnmG-related, conserved site VagYM4_30160 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related VagYM4_30160 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG VagYM4_30160 IPR026904 GidA associated domain 3 VagYM4_30160 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_30170 IPR008254 Flavodoxin/nitric oxide synthase VagYM4_30170 IPR029039 Flavoprotein-like superfamily VagYM4_30190 IPR029787 Nucleotide cyclase VagYM4_30190 IPR000014 PAS domain VagYM4_30190 IPR000700 PAS-associated, C-terminal VagYM4_30190 IPR035965 PAS domain superfamily VagYM4_30190 IPR000160 GGDEF domain VagYM4_30190 IPR013656 PAS fold-4 VagYM4_30200 IPR000705 Galactokinase VagYM4_30200 IPR006204 GHMP kinase N-terminal domain VagYM4_30200 IPR006203 GHMP kinase, ATP-binding, conserved site VagYM4_30200 IPR006206 Mevalonate/galactokinase VagYM4_30200 IPR013750 GHMP kinase, C-terminal domain VagYM4_30200 IPR036554 GHMP kinase, C-terminal domain superfamily VagYM4_30200 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_30200 IPR019539 Galactokinase galactose-binding domain VagYM4_30200 IPR019741 Galactokinase, conserved site VagYM4_30200 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_30200 IPR022963 Galactokinase, bacterial VagYM4_30210 IPR001937 Galactose-1-phosphate uridyl transferase, class I VagYM4_30210 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal VagYM4_30210 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal VagYM4_30210 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site VagYM4_30210 IPR036265 HIT-like superfamily VagYM4_30220 IPR005886 UDP-glucose 4-epimerase VagYM4_30220 IPR036291 NAD(P)-binding domain superfamily VagYM4_30220 IPR016040 NAD(P)-binding domain VagYM4_30230 IPR001734 Sodium/solute symporter VagYM4_30230 IPR018212 Sodium/solute symporter, conserved site VagYM4_30230 IPR038377 Sodium/glucose symporter superfamily VagYM4_30240 IPR013785 Aldolase-type TIM barrel VagYM4_30240 IPR038417 Alpha-galactosidase, N-terminal domain superfamily VagYM4_30240 IPR000111 Glycoside hydrolase family 27/36, conserved site VagYM4_30240 IPR002252 Glycoside hydrolase family 36 VagYM4_30240 IPR017853 Glycoside hydrolase superfamily VagYM4_30240 IPR031704 Glycosyl hydrolase family 36, N-terminal VagYM4_30240 IPR031705 Glycosyl hydrolase family 36, C-terminal VagYM4_30250 IPR000843 LacI-type HTH domain VagYM4_30250 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_30250 IPR028082 Periplasmic binding protein-like I VagYM4_30460 IPR011010 DNA breaking-rejoining enzyme, catalytic core VagYM4_30460 IPR010998 Integrase/recombinase, N-terminal VagYM4_30460 IPR002104 Integrase, catalytic domain VagYM4_30460 IPR013762 Integrase-like, catalytic domain superfamily VagYM4_30460 IPR011932 Tyrosine recombinase XerD VagYM4_30460 IPR023009 Tyrosine recombinase XerC/XerD VagYM4_30460 IPR004107 Integrase, SAM-like, N-terminal VagYM4_30470 IPR006073 GTP binding domain VagYM4_30470 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 VagYM4_30470 IPR005225 Small GTP-binding protein domain VagYM4_30470 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30470 IPR025867 MnmE, helical domain VagYM4_30470 IPR031168 TrmE-type guanine nucleotide-binding domain VagYM4_30470 IPR018948 GTP-binding protein TrmE, N-terminal VagYM4_30470 IPR004520 tRNA modification GTPase MnmE VagYM4_30470 IPR027368 tRNA modification GTPase MnmE domain 2 VagYM4_30480 IPR038221 YidC, periplasmic domain superfamily VagYM4_30480 IPR028053 Membrane insertase YidC, N-terminal VagYM4_30480 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 VagYM4_30480 IPR038210 Membrane insertase YidC, periplasmic domain VagYM4_30480 IPR019998 Membrane insertase YidC VagYM4_30480 IPR028055 Membrane insertase YidC/Oxa1, C-terminal VagYM4_30490 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_30490 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_30490 IPR000100 Ribonuclease P VagYM4_30490 IPR020539 Ribonuclease P, conserved site VagYM4_30500 IPR000271 Ribosomal protein L34 VagYM4_30500 IPR020939 Ribosomal protein L34, conserved site VagYM4_30510 IPR003439 ABC transporter-like VagYM4_30510 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30510 IPR017871 ABC transporter, conserved site VagYM4_30510 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type VagYM4_30510 IPR003593 AAA+ ATPase domain VagYM4_30520 IPR035906 MetI-like superfamily VagYM4_30520 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_30520 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain VagYM4_30530 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_30530 IPR001320 Ionotropic glutamate receptor VagYM4_30530 IPR018313 Solute-binding protein family 3, conserved site VagYM4_30560 IPR003593 AAA+ ATPase domain VagYM4_30560 IPR003439 ABC transporter-like VagYM4_30560 IPR017871 ABC transporter, conserved site VagYM4_30560 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_30560 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30570 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_30570 IPR003593 AAA+ ATPase domain VagYM4_30570 IPR003439 ABC transporter-like VagYM4_30570 IPR017871 ABC transporter, conserved site VagYM4_30570 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30590 IPR012816 NADAR VagYM4_30590 IPR000926 GTP cyclohydrolase II, RibA VagYM4_30590 IPR032677 GTP cyclohydrolase II VagYM4_30590 IPR036144 RibA-like superfamily VagYM4_30590 IPR037238 YbiA-like superfamily VagYM4_30610 IPR003660 HAMP domain VagYM4_30610 IPR011006 CheY-like superfamily VagYM4_30610 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_30610 IPR036641 HPT domain superfamily VagYM4_30610 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_30610 IPR005467 Histidine kinase domain VagYM4_30610 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_30610 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_30610 IPR033414 Periplasmic sensor domain VagYM4_30610 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_30610 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_30610 IPR001789 Signal transduction response regulator, receiver domain VagYM4_30630 IPR002876 Transcriptional regulator TACO1-like VagYM4_30630 IPR029072 YebC-like VagYM4_30630 IPR026564 Transcriptional regulator TACO1-like, domain 3 VagYM4_30630 IPR017856 Integrase-like, N-terminal VagYM4_30640 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site VagYM4_30640 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB VagYM4_30640 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA VagYM4_30660 IPR015854 ABC transporter, lipoprotein release, LolD VagYM4_30660 IPR011924 Lipoprotein releasing system, ATP-binding protein VagYM4_30660 IPR017871 ABC transporter, conserved site VagYM4_30660 IPR003439 ABC transporter-like VagYM4_30660 IPR003593 AAA+ ATPase domain VagYM4_30660 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30700 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_30700 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region VagYM4_30700 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_30700 IPR010559 Signal transduction histidine kinase, internal region VagYM4_30700 IPR003018 GAF domain VagYM4_30710 IPR007492 LytTR DNA-binding domain VagYM4_30710 IPR011006 CheY-like superfamily VagYM4_30710 IPR001789 Signal transduction response regulator, receiver domain VagYM4_30730 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase VagYM4_30730 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site VagYM4_30730 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain VagYM4_30730 IPR029000 Cyclophilin-like domain superfamily VagYM4_30740 IPR003660 HAMP domain VagYM4_30740 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_30740 IPR033480 Single Cache domain 2 VagYM4_30740 IPR000727 Target SNARE coiled-coil homology domain VagYM4_30740 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_30770 IPR004445 Sodium/glutamate symport carrier protein GltS VagYM4_30790 IPR003593 AAA+ ATPase domain VagYM4_30790 IPR003439 ABC transporter-like VagYM4_30790 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_30800 IPR004839 Aminotransferase, class I/classII VagYM4_30800 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_30800 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_30800 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_30800 IPR000524 Transcription regulator HTH, GntR VagYM4_30800 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_30800 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_30810 IPR004445 Sodium/glutamate symport carrier protein GltS VagYM4_30830 IPR018321 Glucosamine-6-phosphate isomerase, conserved site VagYM4_30830 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase VagYM4_30830 IPR037171 NagB/RpiA transferase-like VagYM4_30830 IPR004547 Glucosamine-6-phosphate isomerase VagYM4_30860 IPR020890 Transcription regulator HTH, HdfR VagYM4_30860 IPR000847 Transcription regulator HTH, LysR VagYM4_30860 IPR005119 LysR, substrate-binding VagYM4_30860 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_30860 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_30870 IPR011051 RmlC-like cupin domain superfamily VagYM4_30870 IPR014710 RmlC-like jelly roll fold VagYM4_30870 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain VagYM4_30870 IPR003829 Pirin, N-terminal domain VagYM4_30870 IPR012093 Pirin VagYM4_30880 IPR032808 DoxX family VagYM4_30900 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily VagYM4_30900 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal VagYM4_30900 IPR011257 DNA glycosylase VagYM4_30900 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal VagYM4_30900 IPR003265 HhH-GPD domain VagYM4_30900 IPR000035 Alkylbase DNA glycosidase, conserved site VagYM4_30910 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_30910 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily VagYM4_30910 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain VagYM4_30910 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain VagYM4_30910 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding VagYM4_30910 IPR023546 Methylated-DNA--protein-cysteine methyltransferase VagYM4_30910 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site VagYM4_30930 IPR003740 Uncharacterised membrane protein YitT VagYM4_30950 IPR004672 Na+/H+ antiporter NhaD VagYM4_30950 IPR004680 Citrate transporter-like domain VagYM4_30990 IPR029058 Alpha/Beta hydrolase fold VagYM4_30990 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase VagYM4_30990 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_31000 IPR013540 Chitinase A N-terminal VagYM4_31000 IPR001579 Glycoside hydrolase, chitinase active site VagYM4_31000 IPR001223 Glycoside hydrolase family 18, catalytic domain VagYM4_31000 IPR003610 Carbohydrate-binding module family 5/12 VagYM4_31000 IPR029070 Chitinase insertion domain superfamily VagYM4_31000 IPR036573 Carbohydrate-binding module superfamily 5/12 VagYM4_31000 IPR013783 Immunoglobulin-like fold VagYM4_31000 IPR002126 Cadherin-like VagYM4_31000 IPR014756 Immunoglobulin E-set VagYM4_31000 IPR022409 PKD/Chitinase domain VagYM4_31000 IPR011583 Chitinase II VagYM4_31000 IPR017853 Glycoside hydrolase superfamily VagYM4_31020 IPR011051 RmlC-like cupin domain superfamily VagYM4_31020 IPR014710 RmlC-like jelly roll fold VagYM4_31020 IPR009664 Pyrimidine/purine nucleoside phosphorylase VagYM4_31040 IPR000160 GGDEF domain VagYM4_31040 IPR035919 EAL domain superfamily VagYM4_31040 IPR001633 EAL domain VagYM4_31040 IPR005330 MHYT domain VagYM4_31040 IPR029787 Nucleotide cyclase VagYM4_31050 IPR002528 Multi antimicrobial extrusion protein VagYM4_31060 IPR006225 Pseudouridine synthase, RluC/RluD VagYM4_31060 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site VagYM4_31060 IPR020103 Pseudouridine synthase, catalytic domain superfamily VagYM4_31060 IPR006145 Pseudouridine synthase, RsuA/RluA VagYM4_31090 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_31090 IPR005119 LysR, substrate-binding VagYM4_31090 IPR000847 Transcription regulator HTH, LysR VagYM4_31090 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_31100 IPR006379 HAD-superfamily hydrolase, subfamily IIB VagYM4_31100 IPR023214 HAD superfamily VagYM4_31100 IPR036412 HAD-like superfamily VagYM4_31100 IPR000150 Cof family VagYM4_31120 IPR029787 Nucleotide cyclase VagYM4_31120 IPR003660 HAMP domain VagYM4_31120 IPR000160 GGDEF domain VagYM4_31120 IPR033417 Periplasmic sensor domain CHASE8 VagYM4_31140 IPR014186 S-formylglutathione hydrolase VagYM4_31140 IPR000801 Putative esterase VagYM4_31140 IPR029058 Alpha/Beta hydrolase fold VagYM4_31150 IPR020843 Polyketide synthase, enoylreductase domain VagYM4_31150 IPR036291 NAD(P)-binding domain superfamily VagYM4_31150 IPR011032 GroES-like superfamily VagYM4_31150 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site VagYM4_31150 IPR013154 Alcohol dehydrogenase, N-terminal VagYM4_31150 IPR013149 Alcohol dehydrogenase, C-terminal VagYM4_31150 IPR014183 Alcohol dehydrogenase class III VagYM4_31160 IPR038765 Papain-like cysteine peptidase superfamily VagYM4_31160 IPR001447 Arylamine N-acetyltransferase VagYM4_31170 IPR000847 Transcription regulator HTH, LysR VagYM4_31170 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_31170 IPR005119 LysR, substrate-binding VagYM4_31170 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_31180 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VagYM4_31180 IPR013113 FAD-binding 9, siderophore-interacting VagYM4_31180 IPR007037 Siderophore-interacting protein, C-terminal domain VagYM4_31180 IPR039374 Siderophore-interacting protein VagYM4_31180 IPR017927 FAD-binding domain, ferredoxin reductase-type VagYM4_31180 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_31190 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain VagYM4_31190 IPR029058 Alpha/Beta hydrolase fold VagYM4_31190 IPR011042 Six-bladed beta-propeller, TolB-like VagYM4_31200 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_31210 IPR011991 ArsR-like helix-turn-helix domain VagYM4_31210 IPR000485 AsnC-type HTH domain VagYM4_31210 IPR011008 Dimeric alpha-beta barrel VagYM4_31210 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VagYM4_31210 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VagYM4_31210 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_31210 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_31210 IPR019888 Transcription regulator AsnC-type VagYM4_31220 IPR014756 Immunoglobulin E-set VagYM4_31220 IPR041029 N-acetylglucosamine binding protein A domain 2 VagYM4_31220 IPR004302 Cellulose/chitin-binding protein, N-terminal VagYM4_31250 IPR001646 Pentapeptide repeat VagYM4_31260 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VagYM4_31260 IPR005618 Outer membrane protein, OmpW VagYM4_31270 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VagYM4_31280 IPR020846 Major facilitator superfamily domain VagYM4_31280 IPR011701 Major facilitator superfamily VagYM4_31280 IPR004638 Drug resistance transporter EmrB-like VagYM4_31280 IPR036259 MFS transporter superfamily VagYM4_31300 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VagYM4_31300 IPR001279 Metallo-beta-lactamase VagYM4_31300 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D VagYM4_31320 IPR001661 Glycoside hydrolase, family 37 VagYM4_31320 IPR012341 Six-hairpin glycosidase-like superfamily VagYM4_31320 IPR008928 Six-hairpin glycosidase superfamily VagYM4_31330 IPR002589 Macro domain VagYM4_31340 IPR037523 Vicinal oxygen chelate (VOC) domain VagYM4_31340 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_31340 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VagYM4_31350 IPR037416 Nodulation protein D, PBP2 VagYM4_31350 IPR005119 LysR, substrate-binding VagYM4_31350 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_31350 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_31350 IPR000847 Transcription regulator HTH, LysR VagYM4_31370 IPR000847 Transcription regulator HTH, LysR VagYM4_31370 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_31370 IPR005119 LysR, substrate-binding VagYM4_31370 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_31400 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VagYM4_31400 IPR041492 Haloacid dehalogenase-like hydrolase VagYM4_31400 IPR006439 HAD hydrolase, subfamily IA VagYM4_31400 IPR036412 HAD-like superfamily VagYM4_31400 IPR023214 HAD superfamily VagYM4_31450 IPR041522 CdaR, GGDEF-like domain VagYM4_31450 IPR025736 PucR C-terminal helix-turn-helix domain VagYM4_31450 IPR008599 Putative sugar diacid recognition VagYM4_31450 IPR042070 PucR C-terminal helix-turn-helix domain superfamily VagYM4_31460 IPR003474 Gluconate transporter VagYM4_31470 IPR004381 Glycerate kinase VagYM4_31470 IPR018193 Glycerate kinase, flavodoxin-like fold VagYM4_31470 IPR036129 Glycerate kinase superfamily VagYM4_31470 IPR018197 Glycerate kinase, restriction-enzyme-like fold VagYM4_31480 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_31480 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_31480 IPR004839 Aminotransferase, class I/classII VagYM4_31480 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_31480 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_31480 IPR000524 Transcription regulator HTH, GntR VagYM4_31480 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_31520 IPR000182 GNAT domain VagYM4_31520 IPR027455 Spermine/spermidine acetyltransferase, N-terminal VagYM4_31520 IPR016181 Acyl-CoA N-acyltransferase VagYM4_31550 IPR036291 NAD(P)-binding domain superfamily VagYM4_31550 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_31550 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_31560 IPR000182 GNAT domain VagYM4_31560 IPR016181 Acyl-CoA N-acyltransferase VagYM4_31570 IPR011031 Multihaem cytochrome VagYM4_31570 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK VagYM4_31570 IPR038266 NapC/NirT cytochrome c superfamily VagYM4_31570 IPR005126 NapC/NirT cytochrome c, N-terminal VagYM4_31570 IPR036280 Multiheme cytochrome superfamily VagYM4_31580 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site VagYM4_31580 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VagYM4_31580 IPR006656 Molybdopterin oxidoreductase VagYM4_31580 IPR041954 Trimethylamine-N-oxide reductase-like, molybdopterin-binding domain VagYM4_31580 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase VagYM4_31580 IPR009010 Aspartate decarboxylase-like domain superfamily VagYM4_31580 IPR006657 Molybdopterin dinucleotide-binding domain VagYM4_31580 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_31580 IPR041460 Molybdopterin oxidoreductase, N-terminal VagYM4_31600 IPR013785 Aldolase-type TIM barrel VagYM4_31600 IPR022998 Thiamine phosphate synthase/TenI VagYM4_31600 IPR034291 Thiamine phosphate synthase VagYM4_31600 IPR036206 Thiamin phosphate synthase superfamily VagYM4_31610 IPR000417 Hydroxyethylthiazole kinase VagYM4_31610 IPR029056 Ribokinase-like VagYM4_31620 IPR027574 Thiaminase II VagYM4_31620 IPR004305 Thiaminase-2/PQQC VagYM4_31620 IPR016084 Haem oxygenase-like, multi-helical VagYM4_31630 IPR027939 NMT1/THI5 family VagYM4_31630 IPR015168 SsuA/THI5-like VagYM4_31640 IPR035906 MetI-like superfamily VagYM4_31640 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_31650 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_31650 IPR017871 ABC transporter, conserved site VagYM4_31650 IPR003593 AAA+ ATPase domain VagYM4_31650 IPR003439 ABC transporter-like VagYM4_31660 IPR029056 Ribokinase-like VagYM4_31660 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase VagYM4_31660 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase VagYM4_31670 IPR002510 Metalloprotease TldD/PmbA VagYM4_31670 IPR036059 Metalloprotease TldD/PmbA superfamily VagYM4_31670 IPR035068 Metalloprotease TldD/PmbA, N-terminal VagYM4_31680 IPR025502 TldD VagYM4_31680 IPR036059 Metalloprotease TldD/PmbA superfamily VagYM4_31680 IPR035068 Metalloprotease TldD/PmbA, N-terminal VagYM4_31680 IPR002510 Metalloprotease TldD/PmbA VagYM4_31690 IPR029028 Alpha/beta knot methyltransferases VagYM4_31690 IPR007158 tRNA (pseudouridine(54)-N(1))-methyltransferase, TrmY VagYM4_31690 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal VagYM4_31730 IPR021230 Protein of unknown function DUF2810 VagYM4_31740 IPR036291 NAD(P)-binding domain superfamily VagYM4_31740 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain VagYM4_31740 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM4_31740 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site VagYM4_31740 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 VagYM4_31760 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily VagYM4_31760 IPR030395 Glycerophosphodiester phosphodiesterase domain VagYM4_31770 IPR018177 L-lactate dehydrogenase, active site VagYM4_31770 IPR022383 Lactate/malate dehydrogenase, C-terminal VagYM4_31770 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal VagYM4_31770 IPR036291 NAD(P)-binding domain superfamily VagYM4_31770 IPR011304 L-lactate dehydrogenase VagYM4_31770 IPR001236 Lactate/malate dehydrogenase, N-terminal VagYM4_31770 IPR001557 L-lactate/malate dehydrogenase VagYM4_31780 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_31780 IPR011006 CheY-like superfamily VagYM4_31780 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_31780 IPR001789 Signal transduction response regulator, receiver domain VagYM4_31780 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_31780 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_31790 IPR003660 HAMP domain VagYM4_31790 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_31790 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_31790 IPR005467 Histidine kinase domain VagYM4_31790 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_31790 IPR031930 2-component histidine kinase, sensor domain VagYM4_31790 IPR038428 2-component histidine kinase, sensor domain superfamily VagYM4_31790 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_31790 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_31800 IPR039423 TonB-dependent receptor-like VagYM4_31800 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_31800 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_31800 IPR010105 TonB-dependent siderophore receptor VagYM4_31800 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_31800 IPR012910 TonB-dependent receptor, plug domain VagYM4_31820 IPR002898 MotA/TolQ/ExbB proton channel VagYM4_31830 IPR002898 MotA/TolQ/ExbB proton channel VagYM4_31840 IPR003400 Biopolymer transport protein ExbD/TolR VagYM4_31930 IPR006129 Adhesin B VagYM4_31930 IPR006127 Periplasmic solute binding protein, ZnuA-like VagYM4_31930 IPR006128 Adhesion lipoprotein VagYM4_31940 IPR003439 ABC transporter-like VagYM4_31940 IPR017871 ABC transporter, conserved site VagYM4_31940 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_31940 IPR003593 AAA+ ATPase domain VagYM4_31950 IPR001626 ABC transporter, TroCD-like VagYM4_31950 IPR037294 ABC transporter, BtuC-like VagYM4_31980 IPR002471 Peptidase S9, serine active site VagYM4_31980 IPR029058 Alpha/Beta hydrolase fold VagYM4_31980 IPR023302 Peptidase S9A, N-terminal domain VagYM4_31980 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain VagYM4_31980 IPR002470 Peptidase S9A, prolyl oligopeptidase VagYM4_31990 IPR020846 Major facilitator superfamily domain VagYM4_31990 IPR011701 Major facilitator superfamily VagYM4_31990 IPR036259 MFS transporter superfamily VagYM4_31990 IPR004734 Multidrug resistance protein VagYM4_32000 IPR006035 Ureohydrolase VagYM4_32000 IPR020855 Ureohydrolase, manganese-binding site VagYM4_32000 IPR023694 Agmatinase VagYM4_32000 IPR005925 Agmatinase-related VagYM4_32000 IPR023696 Ureohydrolase domain superfamily VagYM4_32010 IPR000183 Ornithine/DAP/Arg decarboxylase VagYM4_32010 IPR041128 Arginine decarboxylase, C-terminal helical VagYM4_32010 IPR002985 Arginine decarboxylase VagYM4_32010 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal VagYM4_32010 IPR040634 Arginine decarboxylase, helical bundle domain VagYM4_32010 IPR029066 PLP-binding barrel VagYM4_32010 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal VagYM4_32020 IPR001018 Beta-lactamase, class-B, conserved site VagYM4_32020 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like VagYM4_32020 IPR001279 Metallo-beta-lactamase VagYM4_32030 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK VagYM4_32030 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX VagYM4_32030 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_32030 IPR013651 ATP-grasp fold, RimK-type VagYM4_32030 IPR011761 ATP-grasp fold VagYM4_32030 IPR021109 Aspartic peptidase domain superfamily VagYM4_32030 IPR041107 RimK, PreATP-grasp domain VagYM4_32040 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX VagYM4_32040 IPR013651 ATP-grasp fold, RimK-type VagYM4_32040 IPR011761 ATP-grasp fold VagYM4_32040 IPR041107 RimK, PreATP-grasp domain VagYM4_32040 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK VagYM4_32040 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_32050 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_32050 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_32050 IPR005119 LysR, substrate-binding VagYM4_32050 IPR000847 Transcription regulator HTH, LysR VagYM4_32100 IPR017853 Glycoside hydrolase superfamily VagYM4_32100 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site VagYM4_32100 IPR018120 Glycoside hydrolase family 1, active site VagYM4_32100 IPR001360 Glycoside hydrolase family 1 VagYM4_32120 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_32120 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_32120 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) VagYM4_32120 IPR005467 Histidine kinase domain VagYM4_32120 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_32120 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_32120 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_32120 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_32130 IPR011006 CheY-like superfamily VagYM4_32130 IPR009057 Homeobox-like domain superfamily VagYM4_32130 IPR002197 DNA binding HTH domain, Fis-type VagYM4_32130 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_32130 IPR001789 Signal transduction response regulator, receiver domain VagYM4_32130 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_32130 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_32130 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_32130 IPR003593 AAA+ ATPase domain VagYM4_32130 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_32140 IPR000160 GGDEF domain VagYM4_32140 IPR029787 Nucleotide cyclase VagYM4_32150 IPR004685 Branched-chain amino acid transport system II carrier protein VagYM4_32180 IPR030862 L-2-hydroxyglutarate dehydrogenase VagYM4_32180 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_32180 IPR006076 FAD dependent oxidoreductase VagYM4_32200 IPR003317 Cytochrome ubiquinol oxidase subunit 2 VagYM4_32210 IPR002585 Cytochrome ubiquinol oxidase subunit 1 VagYM4_32220 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B VagYM4_32220 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD VagYM4_32230 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase VagYM4_32230 IPR013440 Tryptophanase VagYM4_32230 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_32230 IPR018176 Tryptophanase, conserved site VagYM4_32230 IPR011166 Beta-eliminating lyase family VagYM4_32230 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_32230 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_32250 IPR002668 Concentrative nucleoside transporter N-terminal domain VagYM4_32250 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial VagYM4_32250 IPR008276 Concentrative nucleoside transporter VagYM4_32250 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain VagYM4_32250 IPR011657 Concentrative nucleoside transporter C-terminal domain VagYM4_32280 IPR000160 GGDEF domain VagYM4_32280 IPR007894 MASE2 VagYM4_32280 IPR029787 Nucleotide cyclase VagYM4_32310 IPR029787 Nucleotide cyclase VagYM4_32310 IPR000160 GGDEF domain VagYM4_32320 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily VagYM4_32320 IPR006050 DNA photolyase, N-terminal VagYM4_32320 IPR002081 Cryptochrome/DNA photolyase class 1 VagYM4_32320 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain VagYM4_32320 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily VagYM4_32320 IPR014133 Cryptochrome DASH VagYM4_32320 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_32330 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_32330 IPR007357 Deoxyribodipyrimidine photolyase-related protein VagYM4_32330 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily VagYM4_32350 IPR002579 Peptide methionine sulphoxide reductase MrsB VagYM4_32350 IPR028427 Peptide methionine sulfoxide reductase VagYM4_32350 IPR002569 Peptide methionine sulphoxide reductase MsrA VagYM4_32350 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily VagYM4_32350 IPR011057 Mss4-like superfamily VagYM4_32360 IPR036102 OsmC/Ohr superfamily VagYM4_32360 IPR003718 OsmC/Ohr family VagYM4_32360 IPR015946 K homology domain-like, alpha/beta VagYM4_32370 IPR001451 Hexapeptide repeat VagYM4_32370 IPR011004 Trimeric LpxA-like superfamily VagYM4_32370 IPR024688 Maltose/galactoside acetyltransferase VagYM4_32370 IPR018357 Hexapeptide transferase, conserved site VagYM4_32440 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_32440 IPR005119 LysR, substrate-binding VagYM4_32440 IPR000847 Transcription regulator HTH, LysR VagYM4_32440 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_32450 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VagYM4_32450 IPR036412 HAD-like superfamily VagYM4_32450 IPR041492 Haloacid dehalogenase-like hydrolase VagYM4_32450 IPR006439 HAD hydrolase, subfamily IA VagYM4_32450 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB VagYM4_32450 IPR023214 HAD superfamily VagYM4_32480 IPR006513 Conserved hypothetical protein CHP01626, YtfJ VagYM4_32490 IPR018338 Carbonic anhydrase, alpha-class, conserved site VagYM4_32490 IPR041891 Carbonic anhydrase, prokaryotic-like VagYM4_32490 IPR023561 Carbonic anhydrase, alpha-class VagYM4_32490 IPR036398 Alpha carbonic anhydrase domain superfamily VagYM4_32490 IPR001148 Alpha carbonic anhydrase domain VagYM4_32500 IPR042117 OMPP1/FadL/TodX superfamily VagYM4_32500 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_32510 IPR008265 Lipase, GDSL, active site VagYM4_32510 IPR036514 SGNH hydrolase superfamily VagYM4_32510 IPR001087 GDSL lipase/esterase VagYM4_32520 IPR034202 Subtilisin Carlsberg-like catalytic domain VagYM4_32520 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily VagYM4_32520 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 VagYM4_32520 IPR023828 Peptidase S8, subtilisin, Ser-active site VagYM4_32520 IPR015500 Peptidase S8, subtilisin-related VagYM4_32520 IPR036852 Peptidase S8/S53 domain superfamily VagYM4_32520 IPR000209 Peptidase S8/S53 domain VagYM4_32520 IPR022398 Peptidase S8, subtilisin, His-active site VagYM4_32520 IPR023827 Peptidase S8, subtilisin, Asp-active site VagYM4_32540 IPR004703 Phosphotransferase system, sugar-specific permease component VagYM4_32560 IPR016152 Phosphotransferase/anion transporter VagYM4_32560 IPR002178 PTS EIIA type-2 domain VagYM4_32570 IPR000843 LacI-type HTH domain VagYM4_32570 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_32570 IPR028082 Periplasmic binding protein-like I VagYM4_32580 IPR041492 Haloacid dehalogenase-like hydrolase VagYM4_32580 IPR006439 HAD hydrolase, subfamily IA VagYM4_32580 IPR023214 HAD superfamily VagYM4_32580 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VagYM4_32580 IPR036412 HAD-like superfamily VagYM4_32580 IPR006323 Phosphonoacetaldehyde hydrolase VagYM4_32600 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_32600 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_32600 IPR012703 2-aminoethylphosphonate--pyruvate transaminase VagYM4_32600 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase VagYM4_32600 IPR000192 Aminotransferase class V domain VagYM4_32600 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_32610 IPR026045 Ferric binding protein VagYM4_32620 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_32620 IPR003593 AAA+ ATPase domain VagYM4_32620 IPR015853 ABC transporter, ferric cation import, FbpC VagYM4_32620 IPR017871 ABC transporter, conserved site VagYM4_32620 IPR003439 ABC transporter-like VagYM4_32620 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 VagYM4_32620 IPR008995 Molybdate/tungstate binding, C-terminal VagYM4_32630 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_32630 IPR035906 MetI-like superfamily VagYM4_32640 IPR000524 Transcription regulator HTH, GntR VagYM4_32640 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VagYM4_32640 IPR011663 UbiC transcription regulator-associated VagYM4_32640 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_32640 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_32640 IPR017722 Phosphonate utilization transcriptional regulator PhnR VagYM4_32670 IPR007488 Protein of unknown function DUF535 VagYM4_32690 IPR006076 FAD dependent oxidoreductase VagYM4_32690 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_32700 IPR000834 Peptidase M14, carboxypeptidase A VagYM4_32700 IPR040626 Cytosolic carboxypeptidase, N-terminal VagYM4_32710 IPR006664 Outer membrane protein, bacterial VagYM4_32710 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VagYM4_32710 IPR002368 Outer membrane protein, OmpA VagYM4_32710 IPR006665 OmpA-like domain VagYM4_32710 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_32710 IPR000498 Outer membrane protein OmpA-like, transmembrane domain VagYM4_32710 IPR036737 OmpA-like domain superfamily VagYM4_32720 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_32720 IPR000847 Transcription regulator HTH, LysR VagYM4_32720 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_32720 IPR005119 LysR, substrate-binding VagYM4_32740 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_32740 IPR000847 Transcription regulator HTH, LysR VagYM4_32740 IPR005119 LysR, substrate-binding VagYM4_32740 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_32760 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site VagYM4_32760 IPR020846 Major facilitator superfamily domain VagYM4_32760 IPR036259 MFS transporter superfamily VagYM4_32760 IPR000109 Proton-dependent oligopeptide transporter family VagYM4_32760 IPR005279 Dipeptide/tripeptide permease VagYM4_32770 IPR005130 Serine dehydratase-like, alpha subunit VagYM4_32770 IPR005131 Serine dehydratase beta chain VagYM4_32770 IPR029009 Allosteric substrate binding domain superfamily VagYM4_32770 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form VagYM4_32810 IPR033709 Isoleucyl tRNA synthetase type 2, anticodon-binding domain VagYM4_32810 IPR002300 Aminoacyl-tRNA synthetase, class Ia VagYM4_32810 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_32810 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding VagYM4_32810 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_32810 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding VagYM4_32810 IPR023586 Isoleucine-tRNA ligase, type 2 VagYM4_32810 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain VagYM4_32810 IPR002301 Isoleucine-tRNA ligase VagYM4_32820 IPR023346 Lysozyme-like domain superfamily VagYM4_32820 IPR008258 Transglycosylase SLT domain 1 VagYM4_32820 IPR000189 Prokaryotic transglycosylase, active site VagYM4_32860 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_32860 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_32860 IPR006300 Flagellar basal-body rod protein FlgB VagYM4_32870 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_32870 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_32870 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_32870 IPR006299 Flagellar basal-body rod protein FlgC VagYM4_32880 IPR025965 FlgD Ig-like domain VagYM4_32880 IPR005648 Flagellar hook capping protein VagYM4_32880 IPR025963 FlgD Tudor-like domain VagYM4_32890 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_32890 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_32890 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VagYM4_32890 IPR037058 Flagellar hook protein FlgE superfamily VagYM4_32890 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VagYM4_32890 IPR011491 Flagellar hook protein FlgE VagYM4_32890 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_32900 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VagYM4_32900 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_32900 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VagYM4_32900 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_32900 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_32910 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_32910 IPR020013 Flagellar hook-basal body protein, FlgE/F/G VagYM4_32910 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_32910 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_32910 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like VagYM4_32910 IPR012834 Flagellar basal-body rod FlgG VagYM4_32920 IPR000527 Flagellar L-ring protein VagYM4_32930 IPR001782 Flagellar P-ring protein VagYM4_32940 IPR019301 Flagellar protein FlgJ, N-terminal VagYM4_32940 IPR013377 Peptidoglycan hydrolase FlgJ VagYM4_32940 IPR023346 Lysozyme-like domain superfamily VagYM4_32940 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain VagYM4_32950 IPR001444 Flagellar basal body rod protein, N-terminal VagYM4_32950 IPR002371 Flagellar hook-associated protein 1 VagYM4_32950 IPR010930 Flagellar basal-body/hook protein, C-terminal domain VagYM4_32950 IPR019776 Flagellar basal body rod protein, conserved site VagYM4_32960 IPR001029 Flagellin, D0/D1 domain VagYM4_32960 IPR013384 Flagellar hook-associated protein 3 VagYM4_33000 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent VagYM4_33000 IPR000262 FMN-dependent dehydrogenase VagYM4_33000 IPR013785 Aldolase-type TIM barrel VagYM4_33030 IPR001763 Rhodanese-like domain VagYM4_33030 IPR036873 Rhodanese-like domain superfamily VagYM4_33030 IPR023695 Thiosulfate sulfurtransferase, bacterial VagYM4_33040 IPR037124 GroES chaperonin superfamily VagYM4_33040 IPR020818 GroES chaperonin family VagYM4_33040 IPR018369 Chaperonin GroES, conserved site VagYM4_33040 IPR011032 GroES-like superfamily VagYM4_33050 IPR027409 GroEL-like apical domain superfamily VagYM4_33050 IPR027410 TCP-1-like chaperonin intermediate domain superfamily VagYM4_33050 IPR002423 Chaperonin Cpn60/TCP-1 family VagYM4_33050 IPR001844 Chaperonin Cpn60 VagYM4_33050 IPR018370 Chaperonin Cpn60, conserved site VagYM4_33050 IPR027413 GroEL-like equatorial domain superfamily VagYM4_33080 IPR004778 Homoserine/Threonine efflux protein VagYM4_33080 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_33090 IPR000847 Transcription regulator HTH, LysR VagYM4_33090 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33090 IPR037418 HTH-type transcriptional regulator TrpI, PBP2 VagYM4_33090 IPR005119 LysR, substrate-binding VagYM4_33090 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_33120 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_33120 IPR009057 Homeobox-like domain superfamily VagYM4_33120 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_33120 IPR013570 Transcription regulator YsiA, C-terminal VagYM4_33130 IPR018060 DNA binding HTH domain, AraC-type VagYM4_33130 IPR009057 Homeobox-like domain superfamily VagYM4_33130 IPR018062 HTH domain AraC-type, conserved site VagYM4_33140 IPR013785 Aldolase-type TIM barrel VagYM4_33140 IPR010628 Ethanolamine ammonia lyase large subunit VagYM4_33150 IPR009246 Ethanolamine ammonia-lyase light chain VagYM4_33150 IPR042251 Ethanolamine ammonia-lyase light chain, C-terminal VagYM4_33150 IPR042255 Ethanolamine ammonia-lyase light chain, N-terminal VagYM4_33160 IPR004758 Amino acid transporter VagYM4_33160 IPR002293 Amino acid/polyamine transporter I VagYM4_33170 IPR013785 Aldolase-type TIM barrel VagYM4_33170 IPR004136 Nitronate monooxygenase VagYM4_33180 IPR041371 Glycosyl hydrolase family 92 N-terminal domain VagYM4_33180 IPR005887 Alpha-1,2-mannosidase, putative VagYM4_33180 IPR014718 Glycoside hydrolase-type carbohydrate-binding VagYM4_33180 IPR012939 Glycosyl hydrolase family 92 VagYM4_33180 IPR008928 Six-hairpin glycosidase superfamily VagYM4_33190 IPR041371 Glycosyl hydrolase family 92 N-terminal domain VagYM4_33190 IPR012939 Glycosyl hydrolase family 92 VagYM4_33190 IPR014718 Glycoside hydrolase-type carbohydrate-binding VagYM4_33190 IPR005887 Alpha-1,2-mannosidase, putative VagYM4_33190 IPR008928 Six-hairpin glycosidase superfamily VagYM4_33210 IPR014718 Glycoside hydrolase-type carbohydrate-binding VagYM4_33210 IPR041371 Glycosyl hydrolase family 92 N-terminal domain VagYM4_33210 IPR012939 Glycosyl hydrolase family 92 VagYM4_33210 IPR005887 Alpha-1,2-mannosidase, putative VagYM4_33210 IPR008928 Six-hairpin glycosidase superfamily VagYM4_33220 IPR012939 Glycosyl hydrolase family 92 VagYM4_33220 IPR041371 Glycosyl hydrolase family 92 N-terminal domain VagYM4_33220 IPR005887 Alpha-1,2-mannosidase, putative VagYM4_33220 IPR008928 Six-hairpin glycosidase superfamily VagYM4_33220 IPR014718 Glycoside hydrolase-type carbohydrate-binding VagYM4_33230 IPR013014 Phosphotransferase system, EIIC component, type 2 VagYM4_33230 IPR006327 Phosphotransferase system, fructose IIC component VagYM4_33250 IPR028427 Peptide methionine sulfoxide reductase VagYM4_33250 IPR011057 Mss4-like superfamily VagYM4_33250 IPR002569 Peptide methionine sulphoxide reductase MsrA VagYM4_33250 IPR002579 Peptide methionine sulphoxide reductase MrsB VagYM4_33250 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily VagYM4_33260 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_33260 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VagYM4_33260 IPR037523 Vicinal oxygen chelate (VOC) domain VagYM4_33270 IPR018356 Transcription regulator, HTH DeoR-type, conserved site VagYM4_33270 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_33270 IPR001034 DeoR-type HTH domain VagYM4_33270 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33270 IPR014036 DeoR C-terminal sensor domain VagYM4_33270 IPR037171 NagB/RpiA transferase-like VagYM4_33290 IPR036380 Isochorismatase-like superfamily VagYM4_33290 IPR000868 Isochorismatase-like VagYM4_33310 IPR006406 Nicotinate phosphoribosyltransferase VagYM4_33310 IPR007229 Nicotinate phosphoribosyltransferase family VagYM4_33310 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase VagYM4_33310 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal VagYM4_33310 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain VagYM4_33360 IPR005119 LysR, substrate-binding VagYM4_33360 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_33360 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33360 IPR000847 Transcription regulator HTH, LysR VagYM4_33390 IPR010583 MltA-interacting MipA VagYM4_33400 IPR038139 NlpE, C-terminal domain superfamily VagYM4_33400 IPR033450 NlpE, C-terminal OB domain VagYM4_33400 IPR007298 Copper resistance lipoprotein NlpE VagYM4_33410 IPR005892 Glycine betaine transport ATP-binding subunit VagYM4_33410 IPR017871 ABC transporter, conserved site VagYM4_33410 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_33410 IPR003593 AAA+ ATPase domain VagYM4_33410 IPR000644 CBS domain VagYM4_33410 IPR003439 ABC transporter-like VagYM4_33420 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_33420 IPR035906 MetI-like superfamily VagYM4_33430 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_33430 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33430 IPR002852 Uncharacterised protein family UPF0251 VagYM4_33480 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_33480 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_33480 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_33480 IPR004540 Translation elongation factor EFG/EF2 VagYM4_33480 IPR031157 Tr-type G domain, conserved site VagYM4_33480 IPR004161 Translation elongation factor EFTu-like, domain 2 VagYM4_33480 IPR009022 Elongation factor G, domain III VagYM4_33480 IPR035647 EF-G domain III/V-like VagYM4_33480 IPR035649 EFG, domain V VagYM4_33480 IPR000640 Elongation factor EFG, domain V-like VagYM4_33480 IPR009000 Translation protein, beta-barrel domain superfamily VagYM4_33480 IPR005517 Translation elongation factor EFG/EF2, domain IV VagYM4_33480 IPR005225 Small GTP-binding protein domain VagYM4_33480 IPR041095 Elongation Factor G, domain II VagYM4_33480 IPR000795 Transcription factor, GTP-binding domain VagYM4_33490 IPR029017 Enolase-like, N-terminal VagYM4_33490 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain VagYM4_33490 IPR029065 Enolase C-terminal domain-like VagYM4_33490 IPR036849 Enolase-like, C-terminal domain superfamily VagYM4_33490 IPR034603 Dipeptide epimerase VagYM4_33490 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site VagYM4_33490 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal VagYM4_33510 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33510 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_33510 IPR000847 Transcription regulator HTH, LysR VagYM4_33510 IPR005119 LysR, substrate-binding VagYM4_33510 IPR037414 Transcriptional activator protein LysR, PBP2 domain VagYM4_33530 IPR009061 Putative DNA-binding domain superfamily VagYM4_33530 IPR010211 Redox-sensitive transcriptional activator SoxR VagYM4_33530 IPR015358 Transcription regulator MerR, DNA binding VagYM4_33530 IPR000551 MerR-type HTH domain VagYM4_33580 IPR030871 Cardiolipin synthase C VagYM4_33580 IPR025202 Phospholipase D-like domain VagYM4_33580 IPR001736 Phospholipase D/Transphosphatidylase VagYM4_33600 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_33600 IPR001036 Acriflavin resistance protein VagYM4_33650 IPR008995 Molybdate/tungstate binding, C-terminal VagYM4_33650 IPR017871 ABC transporter, conserved site VagYM4_33650 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_33650 IPR003593 AAA+ ATPase domain VagYM4_33650 IPR003439 ABC transporter-like VagYM4_33650 IPR013611 Transport-associated OB, type 2 VagYM4_33650 IPR015853 ABC transporter, ferric cation import, FbpC VagYM4_33700 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_33700 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily VagYM4_33700 IPR017722 Phosphonate utilization transcriptional regulator PhnR VagYM4_33700 IPR011663 UbiC transcription regulator-associated VagYM4_33700 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33700 IPR000524 Transcription regulator HTH, GntR VagYM4_33710 IPR000060 BCCT transporter family VagYM4_33730 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich VagYM4_33730 IPR006103 Glycoside hydrolase family 2, catalytic domain VagYM4_33730 IPR023232 Glycoside hydrolase, family 2, active site VagYM4_33730 IPR006101 Glycoside hydrolase, family 2 VagYM4_33730 IPR040605 Glycoside hydrolase family 2, domain 5 VagYM4_33730 IPR023230 Glycoside hydrolase, family 2, conserved site VagYM4_33730 IPR008979 Galactose-binding-like domain superfamily VagYM4_33730 IPR006104 Glycosyl hydrolases family 2, sugar binding domain VagYM4_33730 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily VagYM4_33730 IPR017853 Glycoside hydrolase superfamily VagYM4_33730 IPR013783 Immunoglobulin-like fold VagYM4_33760 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA VagYM4_33760 IPR001036 Acriflavin resistance protein VagYM4_33760 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_33770 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_33780 IPR005119 LysR, substrate-binding VagYM4_33780 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_33780 IPR000847 Transcription regulator HTH, LysR VagYM4_33780 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33800 IPR024088 Tyrosine-tRNA ligase, bacterial-type VagYM4_33800 IPR002307 Tyrosine-tRNA ligase VagYM4_33800 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 VagYM4_33800 IPR036986 RNA-binding S4 domain superfamily VagYM4_33800 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_33800 IPR002305 Aminoacyl-tRNA synthetase, class Ic VagYM4_33800 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site VagYM4_33800 IPR002942 RNA-binding S4 domain VagYM4_33810 IPR001789 Signal transduction response regulator, receiver domain VagYM4_33810 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_33810 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_33810 IPR011006 CheY-like superfamily VagYM4_33830 IPR008279 PEP-utilising enzyme, mobile domain VagYM4_33830 IPR006319 Phosphoenolpyruvate synthase VagYM4_33830 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_33830 IPR040442 Pyruvate kinase-like domain superfamily VagYM4_33830 IPR000121 PEP-utilising enzyme, C-terminal VagYM4_33830 IPR023151 PEP-utilising enzyme, conserved site VagYM4_33830 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily VagYM4_33830 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding VagYM4_33830 IPR036637 Phosphohistidine domain superfamily VagYM4_33830 IPR018274 PEP-utilising enzyme, active site VagYM4_33840 IPR005177 Bifunctional kinase-pyrophosphorylase VagYM4_33840 IPR026530 Phosphoenolpyruvate synthase regulatory protein VagYM4_33850 IPR020827 Asparaginase/glutaminase, active site 1 VagYM4_33850 IPR027473 L-asparaginase, C-terminal VagYM4_33850 IPR027474 L-asparaginase, N-terminal VagYM4_33850 IPR037152 L-asparaginase, N-terminal domain superfamily VagYM4_33850 IPR004550 L-asparaginase, type II VagYM4_33850 IPR006034 Asparaginase/glutaminase-like VagYM4_33850 IPR036152 Asparaginase/glutaminase-like superfamily VagYM4_33850 IPR040919 Asparaginase/glutaminase, C-terminal VagYM4_33850 IPR027475 Asparaginase/glutaminase, active site 2 VagYM4_33870 IPR000847 Transcription regulator HTH, LysR VagYM4_33870 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33870 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_33870 IPR005119 LysR, substrate-binding VagYM4_33890 IPR004778 Homoserine/Threonine efflux protein VagYM4_33890 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_33900 IPR018636 Protein of unknown function DUF2058 VagYM4_33920 IPR014334 Ectoine utilization protein EutC VagYM4_33920 IPR036291 NAD(P)-binding domain superfamily VagYM4_33920 IPR003462 Ornithine cyclodeaminase/mu-crystallin VagYM4_33920 IPR023401 Ornithine cyclodeaminase, N-terminal VagYM4_33930 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site VagYM4_33930 IPR001926 Pyridoxal-phosphate dependent enzyme VagYM4_33930 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VagYM4_33930 IPR014333 Ectoine utilization protein EutB VagYM4_33940 IPR005814 Aminotransferase class-III VagYM4_33940 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_33940 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_33940 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_33950 IPR015590 Aldehyde dehydrogenase domain VagYM4_33950 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_33950 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_33950 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_33950 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_33950 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_33960 IPR011008 Dimeric alpha-beta barrel VagYM4_33960 IPR000485 AsnC-type HTH domain VagYM4_33960 IPR019888 Transcription regulator AsnC-type VagYM4_33960 IPR011991 ArsR-like helix-turn-helix domain VagYM4_33960 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VagYM4_33960 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_33960 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_33970 IPR038404 TRAP transporter solute receptor DctP superfamily VagYM4_33970 IPR018389 TRAP transporter solute receptor DctP/TeaA VagYM4_33980 IPR018389 TRAP transporter solute receptor DctP/TeaA VagYM4_33980 IPR038404 TRAP transporter solute receptor DctP superfamily VagYM4_33990 IPR007036 Succinylglutamate desuccinylase/aspartoacylase VagYM4_33990 IPR014336 N-alpha-acetyl diaminobutyrate deacetylase DoeB VagYM4_34000 IPR014335 Ectoine utilization protein EutD VagYM4_34000 IPR000994 Peptidase M24 VagYM4_34000 IPR036005 Creatinase/aminopeptidase-like VagYM4_34000 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal VagYM4_34000 IPR000587 Creatinase, N-terminal VagYM4_34010 IPR000524 Transcription regulator HTH, GntR VagYM4_34010 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_34010 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_34010 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_34010 IPR004839 Aminotransferase, class I/classII VagYM4_34010 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_34010 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_34020 IPR007387 TRAP transporter, small membrane protein DctQ VagYM4_34030 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit VagYM4_34030 IPR004681 TRAP transporter large membrane protein DctM VagYM4_34040 IPR018060 DNA binding HTH domain, AraC-type VagYM4_34040 IPR009057 Homeobox-like domain superfamily VagYM4_34040 IPR018062 HTH domain AraC-type, conserved site VagYM4_34040 IPR020449 Transcription regulator HTH, AraC- type VagYM4_34050 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase VagYM4_34050 IPR036291 NAD(P)-binding domain superfamily VagYM4_34050 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_34050 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_34070 IPR013149 Alcohol dehydrogenase, C-terminal VagYM4_34070 IPR013154 Alcohol dehydrogenase, N-terminal VagYM4_34070 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site VagYM4_34070 IPR011032 GroES-like superfamily VagYM4_34070 IPR020843 Polyketide synthase, enoylreductase domain VagYM4_34070 IPR036291 NAD(P)-binding domain superfamily VagYM4_34070 IPR004627 L-threonine 3-dehydrogenase VagYM4_34080 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal VagYM4_34080 IPR013785 Aldolase-type TIM barrel VagYM4_34100 IPR005119 LysR, substrate-binding VagYM4_34100 IPR000847 Transcription regulator HTH, LysR VagYM4_34100 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_34100 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_34110 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_34110 IPR005119 LysR, substrate-binding VagYM4_34110 IPR000847 Transcription regulator HTH, LysR VagYM4_34110 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_34130 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_34130 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_34130 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_34130 IPR001650 Helicase, C-terminal VagYM4_34130 IPR028622 ATP-dependent RNA helicase RhlE VagYM4_34130 IPR011545 DEAD/DEAH box helicase domain VagYM4_34130 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_34170 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_34170 IPR004839 Aminotransferase, class I/classII VagYM4_34170 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_34170 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_34180 IPR020449 Transcription regulator HTH, AraC- type VagYM4_34180 IPR018062 HTH domain AraC-type, conserved site VagYM4_34180 IPR018060 DNA binding HTH domain, AraC-type VagYM4_34180 IPR009057 Homeobox-like domain superfamily VagYM4_34180 IPR002491 ABC transporter periplasmic binding domain VagYM4_34260 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase VagYM4_34260 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_34260 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_34260 IPR036291 NAD(P)-binding domain superfamily VagYM4_34300 IPR003192 Porin, LamB-type VagYM4_34300 IPR021570 LamB-type porin N-terminal domain VagYM4_34300 IPR036998 Porin, LamB-type superfamily VagYM4_34310 IPR028082 Periplasmic binding protein-like I VagYM4_34310 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_34310 IPR000843 LacI-type HTH domain VagYM4_34320 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site VagYM4_34320 IPR036878 Glucose permease domain IIB VagYM4_34320 IPR001996 Phosphotransferase system, IIB component, type 1 VagYM4_34320 IPR010973 Phosphotransferase system, sucrose-specific IIBC component VagYM4_34320 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component VagYM4_34320 IPR003352 Phosphotransferase system, EIIC VagYM4_34320 IPR013013 Phosphotransferase system, EIIC component, type 1 VagYM4_34330 IPR029056 Ribokinase-like VagYM4_34330 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site VagYM4_34330 IPR011611 Carbohydrate kinase PfkB VagYM4_34330 IPR002139 Ribokinase/fructokinase VagYM4_34340 IPR013148 Glycosyl hydrolase family 32, N-terminal VagYM4_34340 IPR013189 Glycosyl hydrolase family 32, C-terminal VagYM4_34340 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily VagYM4_34340 IPR001362 Glycoside hydrolase, family 32 VagYM4_34340 IPR006232 Sucrose-6-phosphate hydrolase VagYM4_34340 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily VagYM4_34340 IPR018053 Glycoside hydrolase, family 32, active site VagYM4_34350 IPR010987 Glutathione S-transferase, C-terminal-like VagYM4_34350 IPR004045 Glutathione S-transferase, N-terminal VagYM4_34350 IPR036249 Thioredoxin-like superfamily VagYM4_34350 IPR040079 Glutathione Transferase family VagYM4_34350 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VagYM4_34370 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A VagYM4_34370 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily VagYM4_34370 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_34370 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal VagYM4_34370 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal VagYM4_34370 IPR015956 Penicillin-binding protein, C-terminal domain superfamily VagYM4_34400 IPR013740 Redoxin VagYM4_34400 IPR037944 Peroxiredoxin-5-like VagYM4_34400 IPR014025 Glutaredoxin subgroup VagYM4_34400 IPR002109 Glutaredoxin VagYM4_34400 IPR036249 Thioredoxin-like superfamily VagYM4_34400 IPR011767 Glutaredoxin active site VagYM4_34400 IPR011906 Glutaredoxin domain VagYM4_34410 IPR001365 Adenosine/AMP deaminase domain VagYM4_34410 IPR032466 Metal-dependent hydrolase VagYM4_34410 IPR028892 Adenine deaminase type 2 VagYM4_34410 IPR006330 Adenosine/adenine deaminase VagYM4_34420 IPR001365 Adenosine/AMP deaminase domain VagYM4_34420 IPR028892 Adenine deaminase type 2 VagYM4_34420 IPR006330 Adenosine/adenine deaminase VagYM4_34420 IPR032466 Metal-dependent hydrolase VagYM4_34450 IPR012156 Cold shock, CspA VagYM4_34450 IPR012340 Nucleic acid-binding, OB-fold VagYM4_34450 IPR002059 Cold-shock protein, DNA-binding VagYM4_34450 IPR019844 Cold-shock (CSD) domain VagYM4_34450 IPR011129 Cold shock domain VagYM4_34460 IPR014710 RmlC-like jelly roll fold VagYM4_34460 IPR012093 Pirin VagYM4_34460 IPR011051 RmlC-like cupin domain superfamily VagYM4_34460 IPR003829 Pirin, N-terminal domain VagYM4_34460 IPR008778 Pirin, C-terminal domain VagYM4_34470 IPR037483 YjjU-like VagYM4_34470 IPR002641 Patatin-like phospholipase domain VagYM4_34470 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VagYM4_34510 IPR000683 Oxidoreductase, N-terminal VagYM4_34510 IPR036291 NAD(P)-binding domain superfamily VagYM4_34520 IPR040423 Phosphoethanolamine transferase VagYM4_34520 IPR012549 Phosphoethanolamine transferase, N-terminal VagYM4_34520 IPR000917 Sulfatase, N-terminal VagYM4_34520 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_34530 IPR000829 DAGK family VagYM4_34530 IPR033718 Diacylglycerol kinase, prokaryotic VagYM4_34530 IPR036945 Diacylglycerol kinase (DAGK) superfamily VagYM4_34550 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_34550 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_34550 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_34550 IPR038515 CpxA, periplasmic domain superfamily VagYM4_34550 IPR005467 Histidine kinase domain VagYM4_34550 IPR032404 Two-component sensor protein CpxA, periplasmic domain VagYM4_34550 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_34550 IPR003660 HAMP domain VagYM4_34550 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_34560 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_34560 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_34560 IPR011006 CheY-like superfamily VagYM4_34560 IPR001789 Signal transduction response regulator, receiver domain VagYM4_34560 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_34560 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_34590 IPR013766 Thioredoxin domain VagYM4_34590 IPR036249 Thioredoxin-like superfamily VagYM4_34590 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL VagYM4_34590 IPR001853 DSBA-like thioredoxin domain VagYM4_34620 IPR029759 Glutathione peroxidase active site VagYM4_34620 IPR036249 Thioredoxin-like superfamily VagYM4_34620 IPR000889 Glutathione peroxidase VagYM4_34630 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB VagYM4_34630 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily VagYM4_34650 IPR036259 MFS transporter superfamily VagYM4_34650 IPR011701 Major facilitator superfamily VagYM4_34650 IPR023727 Lysophospholipid transporter LplT VagYM4_34670 IPR006674 HD domain VagYM4_34670 IPR003607 HD/PDEase domain VagYM4_34680 IPR011059 Metal-dependent hydrolase, composite domain superfamily VagYM4_34680 IPR013108 Amidohydrolase 3 VagYM4_34680 IPR032466 Metal-dependent hydrolase VagYM4_34690 IPR001248 Purine-cytosine permease VagYM4_34690 IPR038271 Purine-cytosine permease superfamily VagYM4_34690 IPR030191 Cytosine permease VagYM4_34700 IPR000644 CBS domain VagYM4_34700 IPR038076 MgtE, N-terminal domain superfamily VagYM4_34700 IPR006668 Magnesium transporter, MgtE intracellular domain VagYM4_34700 IPR006669 Magnesium transporter MgtE VagYM4_34700 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily VagYM4_34700 IPR006667 SLC41 divalent cation transporters, integral membrane domain VagYM4_34700 IPR038048 Magnesium transporter MgtE, transmembrane domain VagYM4_34710 IPR000719 Protein kinase domain VagYM4_34710 IPR011009 Protein kinase-like domain superfamily VagYM4_34710 IPR010232 Probable protein kinase UbiB VagYM4_34710 IPR004147 UbiB domain VagYM4_34720 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_34770 IPR001789 Signal transduction response regulator, receiver domain VagYM4_34770 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_34770 IPR011006 CheY-like superfamily VagYM4_34770 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_34770 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_34770 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_34780 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_34780 IPR032404 Two-component sensor protein CpxA, periplasmic domain VagYM4_34780 IPR038515 CpxA, periplasmic domain superfamily VagYM4_34780 IPR003660 HAMP domain VagYM4_34780 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_34780 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_34780 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_34780 IPR005467 Histidine kinase domain VagYM4_34780 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_34800 IPR000524 Transcription regulator HTH, GntR VagYM4_34800 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_34800 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_34800 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_34800 IPR004839 Aminotransferase, class I/classII VagYM4_34800 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_34810 IPR002293 Amino acid/polyamine transporter I VagYM4_34830 IPR005119 LysR, substrate-binding VagYM4_34830 IPR000847 Transcription regulator HTH, LysR VagYM4_34830 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_34830 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_34870 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain VagYM4_34870 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I VagYM4_34870 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family VagYM4_34870 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain VagYM4_34870 IPR036291 NAD(P)-binding domain superfamily VagYM4_34870 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site VagYM4_34880 IPR011006 CheY-like superfamily VagYM4_34880 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_34880 IPR036641 HPT domain superfamily VagYM4_34880 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_34880 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_34880 IPR001789 Signal transduction response regulator, receiver domain VagYM4_34880 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_34880 IPR005467 Histidine kinase domain VagYM4_34880 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_34880 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_34880 IPR003660 HAMP domain VagYM4_34880 IPR019247 Histidine kinase BarA, N-terminal VagYM4_34890 IPR002528 Multi antimicrobial extrusion protein VagYM4_34900 IPR007458 Protein of unknown function DUF496 VagYM4_34920 IPR007432 Protein of unknown function DUF480 VagYM4_34920 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_34920 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_34930 IPR000305 GIY-YIG endonuclease VagYM4_34930 IPR035901 GIY-YIG endonuclease superfamily VagYM4_34940 IPR028082 Periplasmic binding protein-like I VagYM4_34940 IPR025997 Periplasmic binding protein VagYM4_34950 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_34950 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_34950 IPR005467 Histidine kinase domain VagYM4_34950 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_34950 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_34950 IPR011006 CheY-like superfamily VagYM4_34950 IPR001789 Signal transduction response regulator, receiver domain VagYM4_34950 IPR035965 PAS domain superfamily VagYM4_34950 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_34950 IPR015387 LuxQ, periplasmic VagYM4_34950 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_34970 IPR030196 Multidrug resistance protein MdtN VagYM4_34970 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_34970 IPR005694 Efflux pump membrane protein VagYM4_35010 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_35010 IPR011991 ArsR-like helix-turn-helix domain VagYM4_35010 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VagYM4_35010 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VagYM4_35010 IPR019888 Transcription regulator AsnC-type VagYM4_35010 IPR011008 Dimeric alpha-beta barrel VagYM4_35010 IPR000485 AsnC-type HTH domain VagYM4_35010 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_35060 IPR005791 Protein translocase subunit SecD VagYM4_35060 IPR027398 SecD export protein N-terminal TM domain VagYM4_35060 IPR001036 Acriflavin resistance protein VagYM4_35060 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VagYM4_35060 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VagYM4_35060 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VagYM4_35070 IPR022645 Protein-export membrane protein SecD/SecF, bacterial VagYM4_35070 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site VagYM4_35070 IPR005665 Protein-export membrane protein SecF, bacterial VagYM4_35070 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial VagYM4_35090 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_35100 IPR011283 Acetoacetyl-CoA reductase VagYM4_35100 IPR036291 NAD(P)-binding domain superfamily VagYM4_35100 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_35100 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_35110 IPR020615 Thiolase, acyl-enzyme intermediate active site VagYM4_35110 IPR002155 Thiolase VagYM4_35110 IPR020616 Thiolase, N-terminal VagYM4_35110 IPR020610 Thiolase, active site VagYM4_35110 IPR020617 Thiolase, C-terminal VagYM4_35110 IPR020613 Thiolase, conserved site VagYM4_35110 IPR016039 Thiolase-like VagYM4_35130 IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I VagYM4_35130 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain VagYM4_35130 IPR029058 Alpha/Beta hydrolase fold VagYM4_35150 IPR024717 Denitrification system component NapC/NirT/NrfH VagYM4_35150 IPR005126 NapC/NirT cytochrome c, N-terminal VagYM4_35150 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT VagYM4_35150 IPR038266 NapC/NirT cytochrome c superfamily VagYM4_35150 IPR011031 Multihaem cytochrome VagYM4_35150 IPR036280 Multiheme cytochrome superfamily VagYM4_35160 IPR036280 Multiheme cytochrome superfamily VagYM4_35160 IPR011031 Multihaem cytochrome VagYM4_35160 IPR005591 Nitrate reductase cytochrome c-type subunit NapB VagYM4_35170 IPR006656 Molybdopterin oxidoreductase VagYM4_35170 IPR006657 Molybdopterin dinucleotide-binding domain VagYM4_35170 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site VagYM4_35170 IPR010051 Periplasmic nitrate reductase, large subunit VagYM4_35170 IPR009010 Aspartate decarboxylase-like domain superfamily VagYM4_35170 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain VagYM4_35170 IPR006311 Twin-arginine translocation pathway, signal sequence VagYM4_35170 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain VagYM4_35190 IPR004496 Ferredoxin-type protein NapF VagYM4_35190 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_35190 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_35200 IPR003660 HAMP domain VagYM4_35200 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing VagYM4_35200 IPR005467 Histidine kinase domain VagYM4_35200 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain VagYM4_35200 IPR029095 NarX-like, N-terminal VagYM4_35200 IPR042295 NarX-like, N-terminal domain superfamily VagYM4_35200 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_35200 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_35210 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_35210 IPR011006 CheY-like superfamily VagYM4_35210 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_35210 IPR001789 Signal transduction response regulator, receiver domain VagYM4_35240 IPR036264 Bacterial exopeptidase dimerisation domain VagYM4_35240 IPR002933 Peptidase M20 VagYM4_35240 IPR011650 Peptidase M20, dimerisation domain VagYM4_35240 IPR010161 Peptidase M20B, tripeptide aminopeptidase VagYM4_35240 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site VagYM4_35250 IPR035105 Deoxycytidylate deaminase domain VagYM4_35250 IPR015517 Deoxycytidylate deaminase-related VagYM4_35250 IPR016473 Deoxycytidylate deaminase VagYM4_35250 IPR016193 Cytidine deaminase-like VagYM4_35250 IPR002125 Cytidine and deoxycytidylate deaminase domain VagYM4_35250 IPR016192 APOBEC/CMP deaminase, zinc-binding VagYM4_35260 IPR006143 RND efflux pump, membrane fusion protein VagYM4_35260 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_35270 IPR001036 Acriflavin resistance protein VagYM4_35270 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 VagYM4_35270 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_35280 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_35280 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_35280 IPR003660 HAMP domain VagYM4_35280 IPR033480 Single Cache domain 2 VagYM4_35290 IPR000352 Peptide chain release factor class I VagYM4_35300 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VagYM4_35300 IPR010976 Beta-phosphoglucomutase hydrolase VagYM4_35300 IPR023214 HAD superfamily VagYM4_35300 IPR006439 HAD hydrolase, subfamily IA VagYM4_35300 IPR036412 HAD-like superfamily VagYM4_35300 IPR041492 Haloacid dehalogenase-like hydrolase VagYM4_35310 IPR002368 Outer membrane protein, OmpA VagYM4_35310 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VagYM4_35310 IPR006664 Outer membrane protein, bacterial VagYM4_35310 IPR006665 OmpA-like domain VagYM4_35310 IPR000498 Outer membrane protein OmpA-like, transmembrane domain VagYM4_35310 IPR036737 OmpA-like domain superfamily VagYM4_35310 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_35320 IPR006219 DHAP synthase, class 1 VagYM4_35320 IPR006218 DAHP synthetase I/KDSA VagYM4_35320 IPR013785 Aldolase-type TIM barrel VagYM4_35330 IPR020846 Major facilitator superfamily domain VagYM4_35330 IPR036259 MFS transporter superfamily VagYM4_35330 IPR011701 Major facilitator superfamily VagYM4_35340 IPR013655 PAS fold-3 VagYM4_35340 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_35340 IPR001610 PAC motif VagYM4_35340 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_35340 IPR003660 HAMP domain VagYM4_35340 IPR000014 PAS domain VagYM4_35340 IPR035965 PAS domain superfamily VagYM4_35350 IPR005475 Transketolase-like, pyrimidine-binding domain VagYM4_35350 IPR033247 Transketolase family VagYM4_35350 IPR005478 Transketolase, bacterial-like VagYM4_35350 IPR033248 Transketolase, C-terminal domain VagYM4_35350 IPR020826 Transketolase binding site VagYM4_35350 IPR005474 Transketolase, N-terminal VagYM4_35350 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II VagYM4_35350 IPR029061 Thiamin diphosphate-binding fold VagYM4_35360 IPR018225 Transaldolase, active site VagYM4_35360 IPR013785 Aldolase-type TIM barrel VagYM4_35360 IPR004730 Transaldolase type 1 VagYM4_35360 IPR001585 Transaldolase/Fructose-6-phosphate aldolase VagYM4_35380 IPR001223 Glycoside hydrolase family 18, catalytic domain VagYM4_35380 IPR029070 Chitinase insertion domain superfamily VagYM4_35380 IPR017853 Glycoside hydrolase superfamily VagYM4_35380 IPR013540 Chitinase A N-terminal VagYM4_35380 IPR014756 Immunoglobulin E-set VagYM4_35380 IPR013783 Immunoglobulin-like fold VagYM4_35380 IPR011583 Chitinase II VagYM4_35380 IPR036573 Carbohydrate-binding module superfamily 5/12 VagYM4_35380 IPR003610 Carbohydrate-binding module family 5/12 VagYM4_35380 IPR001579 Glycoside hydrolase, chitinase active site VagYM4_35380 IPR002126 Cadherin-like VagYM4_35380 IPR022409 PKD/Chitinase domain VagYM4_35390 IPR029787 Nucleotide cyclase VagYM4_35390 IPR000160 GGDEF domain VagYM4_35390 IPR001633 EAL domain VagYM4_35390 IPR005330 MHYT domain VagYM4_35390 IPR035919 EAL domain superfamily VagYM4_35400 IPR001307 Thiosulphate sulfurtransferase, conserved site VagYM4_35400 IPR001763 Rhodanese-like domain VagYM4_35400 IPR036873 Rhodanese-like domain superfamily VagYM4_35440 IPR012730 Molybdopterin synthase sulfurylase MoeB VagYM4_35440 IPR035985 Ubiquitin-activating enzyme VagYM4_35440 IPR000594 THIF-type NAD/FAD binding fold VagYM4_35450 IPR036135 MoeA, N-terminal and linker domain superfamily VagYM4_35450 IPR036425 MoaB/Mog-like domain superfamily VagYM4_35450 IPR036688 MoeA, C-terminal, domain IV superfamily VagYM4_35450 IPR005111 MoeA, C-terminal, domain IV VagYM4_35450 IPR038987 Molybdopterin biosynthesis protein MoeA-like VagYM4_35450 IPR008284 Molybdenum cofactor biosynthesis, conserved site VagYM4_35450 IPR001453 MoaB/Mog domain VagYM4_35450 IPR005110 MoeA, N-terminal and linker domain VagYM4_35460 IPR020602 GTP cyclohydrolase I domain VagYM4_35460 IPR001474 GTP cyclohydrolase I VagYM4_35460 IPR018234 GTP cyclohydrolase I, conserved site VagYM4_35470 IPR001046 NRAMP family VagYM4_35490 IPR014743 Chloride channel, core VagYM4_35490 IPR001807 Chloride channel, voltage gated VagYM4_35490 IPR023861 Chloride channel, ClcA VagYM4_35520 IPR036812 NADP-dependent oxidoreductase domain superfamily VagYM4_35520 IPR023210 NADP-dependent oxidoreductase domain VagYM4_35520 IPR020471 Aldo/keto reductase VagYM4_35530 IPR001789 Signal transduction response regulator, receiver domain VagYM4_35530 IPR011006 CheY-like superfamily VagYM4_35550 IPR017953 Carbohydrate kinase, predicted, conserved site VagYM4_35550 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr VagYM4_35550 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase VagYM4_35550 IPR036652 YjeF N-terminal domain superfamily VagYM4_35550 IPR004443 YjeF N-terminal domain VagYM4_35550 IPR029056 Ribokinase-like VagYM4_35560 IPR013785 Aldolase-type TIM barrel VagYM4_35560 IPR005993 GMP reductase VagYM4_35560 IPR015875 IMP dehydrogenase / GMP reductase, conserved site VagYM4_35560 IPR001093 IMP dehydrogenase/GMP reductase VagYM4_35570 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding VagYM4_35570 IPR029061 Thiamin diphosphate-binding fold VagYM4_35580 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain VagYM4_35580 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal VagYM4_35580 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit VagYM4_35580 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain VagYM4_35580 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II VagYM4_35580 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II VagYM4_35580 IPR029061 Thiamin diphosphate-binding fold VagYM4_35590 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_35590 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_35590 IPR000847 Transcription regulator HTH, LysR VagYM4_35590 IPR005119 LysR, substrate-binding VagYM4_35600 IPR011055 Duplicated hybrid motif VagYM4_35600 IPR013731 Opacity-associated protein A, N-terminal VagYM4_35600 IPR018392 LysM domain VagYM4_35600 IPR016047 Peptidase M23 VagYM4_35660 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_35660 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_35660 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_35660 IPR002197 DNA binding HTH domain, Fis-type VagYM4_35660 IPR003593 AAA+ ATPase domain VagYM4_35660 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_35660 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_35660 IPR001789 Signal transduction response regulator, receiver domain VagYM4_35660 IPR009057 Homeobox-like domain superfamily VagYM4_35660 IPR011006 CheY-like superfamily VagYM4_35670 IPR036628 Clp, N-terminal domain superfamily VagYM4_35670 IPR004176 Clp, N-terminal VagYM4_35670 IPR018368 ClpA/B, conserved site 1 VagYM4_35670 IPR041546 ClpA/ClpB, AAA lid domain VagYM4_35670 IPR019489 Clp ATPase, C-terminal VagYM4_35670 IPR017729 Type VI secretion system, ATPase ClpV1 VagYM4_35670 IPR003959 ATPase, AAA-type, core VagYM4_35670 IPR003593 AAA+ ATPase domain VagYM4_35670 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_35670 IPR001270 ClpA/B family VagYM4_35680 IPR036624 Hcp1-like superfamily VagYM4_35680 IPR008514 Type VI secretion system effector, Hcp VagYM4_35690 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset VagYM4_35690 IPR037026 Vgr protein, OB-fold domain superfamily VagYM4_35690 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein VagYM4_35690 IPR006531 Gp5 N-terminal VagYM4_35740 IPR017441 Protein kinase, ATP binding site VagYM4_35740 IPR008271 Serine/threonine-protein kinase, active site VagYM4_35740 IPR023507 Serine/threonine protein kinase PknD VagYM4_35740 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_35740 IPR011009 Protein kinase-like domain superfamily VagYM4_35740 IPR000719 Protein kinase domain VagYM4_35810 IPR011008 Dimeric alpha-beta barrel VagYM4_35810 IPR011991 ArsR-like helix-turn-helix domain VagYM4_35810 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_35810 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VagYM4_35810 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VagYM4_35810 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_35810 IPR019888 Transcription regulator AsnC-type VagYM4_35810 IPR000485 AsnC-type HTH domain VagYM4_35940 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain VagYM4_35940 IPR029058 Alpha/Beta hydrolase fold VagYM4_35950 IPR005829 Sugar transporter, conserved site VagYM4_35950 IPR020846 Major facilitator superfamily domain VagYM4_35950 IPR004812 Drug resistance transporter Bcr/CmlA subfamily VagYM4_35950 IPR036259 MFS transporter superfamily VagYM4_35950 IPR011701 Major facilitator superfamily VagYM4_35970 IPR005119 LysR, substrate-binding VagYM4_35970 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_35970 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_35970 IPR000847 Transcription regulator HTH, LysR VagYM4_35980 IPR036291 NAD(P)-binding domain superfamily VagYM4_35980 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_35980 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_35990 IPR006016 UspA VagYM4_36010 IPR025383 Domain of unknown function DUF4040 VagYM4_36010 IPR005281 Monovalent cation:proton antiporter, subunit B VagYM4_36010 IPR007182 Na+/H+ antiporter MnhB subunit-related protein VagYM4_36010 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal VagYM4_36010 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit VagYM4_36010 IPR005663 Monovalent cation proton antiporter subunit A VagYM4_36050 IPR007208 Na(+)/H(+) antiporter subunit F-like VagYM4_36060 IPR005133 Na+/H+ antiporter subunit G VagYM4_36070 IPR000873 AMP-dependent synthetase/ligase VagYM4_36070 IPR005914 Acetoacetyl-CoA synthase VagYM4_36070 IPR020845 AMP-binding, conserved site VagYM4_36070 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_36070 IPR025110 AMP-binding enzyme, C-terminal domain VagYM4_36080 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_36080 IPR029035 DHS-like NAD/FAD-binding domain superfamily VagYM4_36080 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site VagYM4_36080 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal VagYM4_36080 IPR001308 Electron transfer flavoprotein alpha subunit/FixB VagYM4_36080 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal VagYM4_36080 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal VagYM4_36090 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_36090 IPR012255 Electron transfer flavoprotein, beta subunit VagYM4_36090 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal VagYM4_36090 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site VagYM4_36090 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal VagYM4_36100 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase VagYM4_36100 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_36100 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_36110 IPR024937 Domain X VagYM4_36110 IPR000477 Reverse transcriptase domain VagYM4_36120 IPR017871 ABC transporter, conserved site VagYM4_36120 IPR003593 AAA+ ATPase domain VagYM4_36120 IPR003439 ABC transporter-like VagYM4_36120 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal VagYM4_36120 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_36170 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein VagYM4_36170 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_36170 IPR003593 AAA+ ATPase domain VagYM4_36170 IPR003439 ABC transporter-like VagYM4_36170 IPR017871 ABC transporter, conserved site VagYM4_36180 IPR000873 AMP-dependent synthetase/ligase VagYM4_36180 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_36180 IPR011880 Phenylacetate-CoA ligase VagYM4_36180 IPR028154 AMP-dependent ligase, C-terminal VagYM4_36200 IPR000060 BCCT transporter family VagYM4_36200 IPR018093 BCCT transporter, conserved site VagYM4_36210 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_36210 IPR036291 NAD(P)-binding domain superfamily VagYM4_36210 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_36220 IPR029035 DHS-like NAD/FAD-binding domain superfamily VagYM4_36220 IPR012782 Acetolactate synthase, catabolic VagYM4_36220 IPR029061 Thiamin diphosphate-binding fold VagYM4_36220 IPR000399 TPP-binding enzyme, conserved site VagYM4_36220 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding VagYM4_36220 IPR012000 Thiamine pyrophosphate enzyme, central domain VagYM4_36220 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain VagYM4_36230 IPR005128 Alpha-acetolactate decarboxylase VagYM4_36240 IPR000847 Transcription regulator HTH, LysR VagYM4_36240 IPR005119 LysR, substrate-binding VagYM4_36240 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_36240 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_36240 IPR037410 HTH-type transcriptional regulator BudR, PBP2 domain VagYM4_36270 IPR041679 DNA2/NAM7 helicase-like, AAA domain VagYM4_36270 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_36270 IPR025103 Protein of unknown function DUF4011 VagYM4_36270 IPR041679 DNA2/NAM7 helicase-like, AAA domain VagYM4_36270 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_36270 IPR025103 Protein of unknown function DUF4011 VagYM4_36270 IPR041677 DNA2/NAM7 helicase, AAA domain VagYM4_36270 IPR041677 DNA2/NAM7 helicase, AAA domain VagYM4_36290 IPR003719 Phenazine biosynthesis PhzF protein VagYM4_36310 IPR003317 Cytochrome ubiquinol oxidase subunit 2 VagYM4_36320 IPR002585 Cytochrome ubiquinol oxidase subunit 1 VagYM4_36330 IPR004839 Aminotransferase, class I/classII VagYM4_36330 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_36330 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_36330 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_36330 IPR000524 Transcription regulator HTH, GntR VagYM4_36330 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_36330 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_36370 IPR001789 Signal transduction response regulator, receiver domain VagYM4_36370 IPR005467 Histidine kinase domain VagYM4_36370 IPR003660 HAMP domain VagYM4_36370 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_36370 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_36370 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_36370 IPR011006 CheY-like superfamily VagYM4_36370 IPR036641 HPT domain superfamily VagYM4_36370 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_36370 IPR019247 Histidine kinase BarA, N-terminal VagYM4_36370 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_36370 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_36380 IPR013785 Aldolase-type TIM barrel VagYM4_36380 IPR000891 Pyruvate carboxyltransferase VagYM4_36380 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site VagYM4_36390 IPR011761 ATP-grasp fold VagYM4_36390 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_36390 IPR011764 Biotin carboxylation domain VagYM4_36390 IPR001882 Biotin-binding site VagYM4_36390 IPR041265 Propionyl-coenzyme A carboxylase, BT domain VagYM4_36390 IPR005482 Biotin carboxylase, C-terminal VagYM4_36390 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain VagYM4_36390 IPR000089 Biotin/lipoyl attachment VagYM4_36390 IPR011053 Single hybrid motif VagYM4_36390 IPR011054 Rudiment single hybrid motif VagYM4_36390 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_36390 IPR005481 Biotin carboxylase-like, N-terminal domain VagYM4_36400 IPR014748 Enoyl-CoA hydratase, C-terminal VagYM4_36400 IPR001753 Enoyl-CoA hydratase/isomerase VagYM4_36400 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site VagYM4_36400 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB VagYM4_36400 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_36410 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_36410 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal VagYM4_36410 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal VagYM4_36410 IPR034733 Acetyl-CoA carboxylase VagYM4_36420 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain VagYM4_36420 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal VagYM4_36420 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal VagYM4_36420 IPR006089 Acyl-CoA dehydrogenase, conserved site VagYM4_36420 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily VagYM4_36420 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily VagYM4_36420 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal VagYM4_36430 IPR015358 Transcription regulator MerR, DNA binding VagYM4_36430 IPR000551 MerR-type HTH domain VagYM4_36430 IPR009061 Putative DNA-binding domain superfamily VagYM4_36430 IPR011789 Cu(I)-responsive transcriptional regulator VagYM4_36440 IPR020616 Thiolase, N-terminal VagYM4_36440 IPR020615 Thiolase, acyl-enzyme intermediate active site VagYM4_36440 IPR020613 Thiolase, conserved site VagYM4_36440 IPR016039 Thiolase-like VagYM4_36440 IPR020617 Thiolase, C-terminal VagYM4_36440 IPR020610 Thiolase, active site VagYM4_36440 IPR002155 Thiolase VagYM4_36450 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_36450 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_36450 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_36450 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_36450 IPR015590 Aldehyde dehydrogenase domain VagYM4_36450 IPR010061 Methylmalonate-semialdehyde dehydrogenase VagYM4_36460 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily VagYM4_36460 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily VagYM4_36460 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal VagYM4_36460 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal VagYM4_36460 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain VagYM4_36460 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal VagYM4_36460 IPR006089 Acyl-CoA dehydrogenase, conserved site VagYM4_36470 IPR014748 Enoyl-CoA hydratase, C-terminal VagYM4_36470 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_36470 IPR001753 Enoyl-CoA hydratase/isomerase VagYM4_36470 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site VagYM4_36490 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_36490 IPR013328 6-phosphogluconate dehydrogenase, domain 2 VagYM4_36490 IPR036291 NAD(P)-binding domain superfamily VagYM4_36490 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain VagYM4_36490 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding VagYM4_36490 IPR011548 3-hydroxyisobutyrate dehydrogenase VagYM4_36490 IPR015815 3-hydroxyisobutyrate dehydrogenase-related VagYM4_36490 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site VagYM4_36500 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_36500 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_36500 IPR036291 NAD(P)-binding domain superfamily VagYM4_36500 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase VagYM4_36510 IPR029787 Nucleotide cyclase VagYM4_36510 IPR011006 CheY-like superfamily VagYM4_36510 IPR001789 Signal transduction response regulator, receiver domain VagYM4_36510 IPR000160 GGDEF domain VagYM4_36520 IPR039538 BetI-type transcriptional repressor, C-terminal VagYM4_36520 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_36520 IPR017757 Transcriptional repressor BetI VagYM4_36520 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_36520 IPR009057 Homeobox-like domain superfamily VagYM4_36520 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VagYM4_36530 IPR015590 Aldehyde dehydrogenase domain VagYM4_36530 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_36530 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_36530 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_36530 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_36530 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_36530 IPR011264 Betaine aldehyde dehydrogenase VagYM4_36540 IPR027424 Glucose Oxidase, domain 2 VagYM4_36540 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_36540 IPR012132 Glucose-methanol-choline oxidoreductase VagYM4_36540 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal VagYM4_36540 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal VagYM4_36540 IPR011533 Oxygen-dependent choline dehydrogenase VagYM4_36550 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain VagYM4_36560 IPR035906 MetI-like superfamily VagYM4_36560 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_36570 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_36570 IPR005892 Glycine betaine transport ATP-binding subunit VagYM4_36570 IPR000644 CBS domain VagYM4_36570 IPR017871 ABC transporter, conserved site VagYM4_36570 IPR003439 ABC transporter-like VagYM4_36570 IPR003593 AAA+ ATPase domain VagYM4_36580 IPR029479 Nitroreductase VagYM4_36580 IPR000415 Nitroreductase-like VagYM4_36580 IPR033878 Nitroreductase NfsB-like VagYM4_36600 IPR018080 Band 7/stomatin-like, conserved site VagYM4_36600 IPR001972 Stomatin family VagYM4_36600 IPR032435 Band 7, C-terminal extension VagYM4_36600 IPR036013 Band 7/SPFH domain superfamily VagYM4_36600 IPR001107 Band 7 domain VagYM4_36630 IPR001633 EAL domain VagYM4_36630 IPR035919 EAL domain superfamily VagYM4_36630 IPR000160 GGDEF domain VagYM4_36630 IPR005330 MHYT domain VagYM4_36630 IPR029787 Nucleotide cyclase VagYM4_36630 IPR000014 PAS domain VagYM4_36630 IPR035965 PAS domain superfamily VagYM4_36650 IPR036909 Cytochrome c-like domain superfamily VagYM4_36650 IPR004852 Di-haem cytochrome c peroxidase VagYM4_36650 IPR026259 Di-c-type haem protein, MauG/cytochrome c peroxidase VagYM4_36650 IPR009056 Cytochrome c-like domain VagYM4_36660 IPR015387 LuxQ, periplasmic VagYM4_36660 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_36660 IPR011006 CheY-like superfamily VagYM4_36660 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_36660 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_36660 IPR005467 Histidine kinase domain VagYM4_36660 IPR001789 Signal transduction response regulator, receiver domain VagYM4_36660 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_36660 IPR035965 PAS domain superfamily VagYM4_36660 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_36660 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_36680 IPR033524 Leu/Phe/Val dehydrogenases active site VagYM4_36680 IPR033922 NAD(P) binding domain of glutamate dehydrogenase VagYM4_36680 IPR036291 NAD(P)-binding domain superfamily VagYM4_36680 IPR014362 Glutamate dehydrogenase VagYM4_36680 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain VagYM4_36680 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal VagYM4_36680 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase VagYM4_36700 IPR006694 Fatty acid hydroxylase VagYM4_36770 IPR035919 EAL domain superfamily VagYM4_36770 IPR001633 EAL domain VagYM4_36770 IPR029787 Nucleotide cyclase VagYM4_36770 IPR000160 GGDEF domain VagYM4_36770 IPR003660 HAMP domain VagYM4_36780 IPR023750 RbsD-like superfamily VagYM4_36780 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU VagYM4_36780 IPR023064 D-ribose pyranase VagYM4_36790 IPR003593 AAA+ ATPase domain VagYM4_36790 IPR003439 ABC transporter-like VagYM4_36790 IPR017871 ABC transporter, conserved site VagYM4_36790 IPR015861 ABC transporter, ribose import, RbsA VagYM4_36790 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_36800 IPR001851 ABC transporter, permease VagYM4_36810 IPR025997 Periplasmic binding protein VagYM4_36810 IPR028082 Periplasmic binding protein-like I VagYM4_36820 IPR029056 Ribokinase-like VagYM4_36820 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site VagYM4_36820 IPR011877 Ribokinase VagYM4_36820 IPR011611 Carbohydrate kinase PfkB VagYM4_36820 IPR002139 Ribokinase/fructokinase VagYM4_36830 IPR028082 Periplasmic binding protein-like I VagYM4_36830 IPR000843 LacI-type HTH domain VagYM4_36830 IPR010982 Lambda repressor-like, DNA-binding domain superfamily VagYM4_36850 IPR006419 Nicotinamide mononucleotide transporter PnuC VagYM4_36860 IPR018016 Nucleoside phosphorylase, conserved site VagYM4_36860 IPR000845 Nucleoside phosphorylase domain VagYM4_36860 IPR035994 Nucleoside phosphorylase superfamily VagYM4_36860 IPR010058 Uridine phosphorylase VagYM4_36880 IPR002491 ABC transporter periplasmic binding domain VagYM4_36880 IPR033870 FatB domain VagYM4_36890 IPR037294 ABC transporter, BtuC-like VagYM4_36890 IPR000522 ABC transporter, permease protein, BtuC-like VagYM4_36900 IPR000522 ABC transporter, permease protein, BtuC-like VagYM4_36900 IPR037294 ABC transporter, BtuC-like VagYM4_36910 IPR003593 AAA+ ATPase domain VagYM4_36910 IPR003439 ABC transporter-like VagYM4_36910 IPR017871 ABC transporter, conserved site VagYM4_36910 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_36920 IPR011789 Cu(I)-responsive transcriptional regulator VagYM4_36920 IPR000551 MerR-type HTH domain VagYM4_36920 IPR009061 Putative DNA-binding domain superfamily VagYM4_36930 IPR009057 Homeobox-like domain superfamily VagYM4_36930 IPR018060 DNA binding HTH domain, AraC-type VagYM4_36930 IPR020449 Transcription regulator HTH, AraC- type VagYM4_36930 IPR018062 HTH domain AraC-type, conserved site VagYM4_36940 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_36940 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor VagYM4_36940 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_36940 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_36940 IPR012910 TonB-dependent receptor, plug domain VagYM4_36940 IPR039426 Vitamin B12 transporter BtuB-like VagYM4_37000 IPR010020 Integral membrane protein, YccS/YhfK VagYM4_37000 IPR010019 Integral membrane protein, YccS VagYM4_37000 IPR032692 Integral membrane protein YccS, N-terminal VagYM4_37010 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_37010 IPR022161 DNA helicase IV, N-terminal domain VagYM4_37010 IPR000212 DNA helicase, UvrD/REP type VagYM4_37010 IPR014016 UvrD-like helicase, ATP-binding domain VagYM4_37010 IPR014017 UvrD-like DNA helicase, C-terminal VagYM4_37010 IPR034739 UvrD/AddA helicase, N-terminal VagYM4_37020 IPR036914 Methylglyoxal synthase-like domain superfamily VagYM4_37020 IPR018148 Methylglyoxal synthase, active site VagYM4_37020 IPR004363 Methylglyoxal synthase VagYM4_37020 IPR011607 Methylglyoxal synthase-like domain VagYM4_37030 IPR014301 TMAO reductase system, periplasmic protein TorT VagYM4_37030 IPR001761 Periplasmic binding protein/LacI sugar binding domain VagYM4_37030 IPR028082 Periplasmic binding protein-like I VagYM4_37040 IPR005467 Histidine kinase domain VagYM4_37040 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_37040 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_37040 IPR037952 Sensor histidine kinase TorS, sensor domain VagYM4_37040 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_37040 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_37040 IPR036641 HPT domain superfamily VagYM4_37040 IPR011006 CheY-like superfamily VagYM4_37040 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_37040 IPR003660 HAMP domain VagYM4_37040 IPR038188 TorS, sensor domain superfamily VagYM4_37040 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain VagYM4_37040 IPR001789 Signal transduction response regulator, receiver domain VagYM4_37070 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_37070 IPR011006 CheY-like superfamily VagYM4_37070 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_37070 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_37070 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_37070 IPR001789 Signal transduction response regulator, receiver domain VagYM4_37080 IPR024607 Sulfatase, conserved site VagYM4_37080 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_37080 IPR000917 Sulfatase, N-terminal VagYM4_37090 IPR005119 LysR, substrate-binding VagYM4_37090 IPR000847 Transcription regulator HTH, LysR VagYM4_37090 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_37090 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_37100 IPR032158 Domain of unknown function DUF4994 VagYM4_37100 IPR024607 Sulfatase, conserved site VagYM4_37100 IPR017850 Alkaline-phosphatase-like, core domain superfamily VagYM4_37100 IPR000917 Sulfatase, N-terminal VagYM4_37110 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme VagYM4_37110 IPR007197 Radical SAM VagYM4_37110 IPR023885 4Fe4S-binding SPASM domain VagYM4_37110 IPR013785 Aldolase-type TIM barrel VagYM4_37120 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_37120 IPR011703 ATPase, AAA-3 VagYM4_37120 IPR041628 ChlI/MoxR, AAA lid domain VagYM4_37150 IPR036465 von Willebrand factor A-like domain superfamily VagYM4_37150 IPR033881 von Willebrand factor domain BatA-type VagYM4_37150 IPR002035 von Willebrand factor, type A VagYM4_37180 IPR004794 Riboflavin biosynthesis protein RibD VagYM4_37180 IPR024072 Dihydrofolate reductase-like domain superfamily VagYM4_37180 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal VagYM4_37180 IPR016193 Cytidine deaminase-like VagYM4_37180 IPR011549 Riboflavin-specific deaminase, C-terminal VagYM4_37180 IPR002125 Cytidine and deoxycytidylate deaminase domain VagYM4_37180 IPR016192 APOBEC/CMP deaminase, zinc-binding VagYM4_37190 IPR005119 LysR, substrate-binding VagYM4_37190 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_37190 IPR000847 Transcription regulator HTH, LysR VagYM4_37190 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_37200 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily VagYM4_37200 IPR022433 Lipid kinase YegS VagYM4_37200 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal VagYM4_37200 IPR005218 Diacylglycerol/lipid kinase VagYM4_37200 IPR001206 Diacylglycerol kinase, catalytic domain VagYM4_37210 IPR016052 Bacteriophage 933W, L0136 VagYM4_37210 IPR036700 Bacterial OB-fold superfamily VagYM4_37210 IPR005220 Bacterial OB-fold VagYM4_37230 IPR014883 VRR-NUC domain VagYM4_37230 IPR033315 Fanconi-associated nuclease 1-like VagYM4_37230 IPR040603 Fanconi-associated nuclease 1, SAP domain VagYM4_37230 IPR011856 tRNA endonuclease-like domain superfamily VagYM4_37270 IPR022919 Peptidase M48, protease HtpX, putative VagYM4_37270 IPR001915 Peptidase M48 VagYM4_37280 IPR023353 LemA-like domain superfamily VagYM4_37280 IPR007156 LemA VagYM4_37290 IPR018385 C4-dicarboxylate anaerobic carrier-like VagYM4_37290 IPR004669 C4-dicarboxylate anaerobic carrier VagYM4_37310 IPR006464 N-acetyltransferase RimI/Ard1 VagYM4_37310 IPR016181 Acyl-CoA N-acyltransferase VagYM4_37310 IPR000905 Gcp-like domain VagYM4_37310 IPR000182 GNAT domain VagYM4_37310 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB VagYM4_37330 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_37330 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_37330 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_37330 IPR005467 Histidine kinase domain VagYM4_37330 IPR001789 Signal transduction response regulator, receiver domain VagYM4_37330 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_37330 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_37330 IPR011006 CheY-like superfamily VagYM4_37340 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_37340 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_37340 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_37340 IPR004839 Aminotransferase, class I/classII VagYM4_37350 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain VagYM4_37350 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily VagYM4_37350 IPR019991 GTP-binding protein, ribosome biogenesis VagYM4_37350 IPR006073 GTP binding domain VagYM4_37350 IPR016478 GTPase, MTG1 VagYM4_37350 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_37360 IPR035919 EAL domain superfamily VagYM4_37360 IPR029787 Nucleotide cyclase VagYM4_37360 IPR001633 EAL domain VagYM4_37360 IPR005330 MHYT domain VagYM4_37360 IPR000160 GGDEF domain VagYM4_37370 IPR000700 PAS-associated, C-terminal VagYM4_37370 IPR035965 PAS domain superfamily VagYM4_37370 IPR029787 Nucleotide cyclase VagYM4_37370 IPR013656 PAS fold-4 VagYM4_37370 IPR000160 GGDEF domain VagYM4_37370 IPR000014 PAS domain VagYM4_37390 IPR011006 CheY-like superfamily VagYM4_37390 IPR001789 Signal transduction response regulator, receiver domain VagYM4_37390 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_37400 IPR011006 CheY-like superfamily VagYM4_37400 IPR002545 CheW-like domain VagYM4_37400 IPR036061 CheW-like domain superfamily VagYM4_37400 IPR024181 Chemotaxis response regulator CheV VagYM4_37400 IPR001789 Signal transduction response regulator, receiver domain VagYM4_37430 IPR000620 EamA domain VagYM4_37430 IPR004626 RarD protein VagYM4_37470 IPR023612 Peptidase M4 VagYM4_37470 IPR011096 FTP domain VagYM4_37470 IPR025711 PepSY domain VagYM4_37470 IPR007280 Peptidase, C-terminal, archaeal/bacterial VagYM4_37470 IPR013856 Peptidase M4 domain VagYM4_37470 IPR001570 Peptidase M4, C-terminal VagYM4_37470 IPR027268 Peptidase M4/M1, CTD superfamily VagYM4_37480 IPR000390 Small multidrug resistance protein family VagYM4_37490 IPR000620 EamA domain VagYM4_37520 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_37520 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_37520 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent VagYM4_37520 IPR015590 Aldehyde dehydrogenase domain VagYM4_37520 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_37520 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_37530 IPR030676 Citrate carrier CitT-related VagYM4_37530 IPR001898 Solute carrier family 13 VagYM4_37540 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB VagYM4_37540 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_37540 IPR005467 Histidine kinase domain VagYM4_37540 IPR000014 PAS domain VagYM4_37540 IPR035965 PAS domain superfamily VagYM4_37540 IPR013767 PAS fold VagYM4_37540 IPR039506 SpoOB, alpha-helical domain VagYM4_37540 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_37540 IPR033463 Single cache domain 3 VagYM4_37540 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_37540 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_37550 IPR011006 CheY-like superfamily VagYM4_37550 IPR028141 Transcriptional regulator VagYM4_37550 IPR024187 Signal transduction response regulator, citrate/malate metabolism VagYM4_37550 IPR001789 Signal transduction response regulator, receiver domain VagYM4_37570 IPR024188 Glutamate synthase large subunit-like protein VagYM4_37570 IPR002932 Glutamate synthase domain VagYM4_37570 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_37570 IPR013785 Aldolase-type TIM barrel VagYM4_37570 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_37580 IPR019794 Peroxidase, active site VagYM4_37580 IPR000763 Catalase-peroxidase haem VagYM4_37580 IPR010255 Haem peroxidase superfamily VagYM4_37580 IPR002016 Haem peroxidase VagYM4_37590 IPR024467 Domain of unknown function DUF2384 VagYM4_37590 IPR011979 Conserved hypothetical protein CHP02293 VagYM4_37610 IPR036514 SGNH hydrolase superfamily VagYM4_37610 IPR002656 Acyltransferase 3 VagYM4_37630 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal VagYM4_37630 IPR013785 Aldolase-type TIM barrel VagYM4_37640 IPR018146 Glyoxalase I, conserved site VagYM4_37640 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_37640 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VagYM4_37640 IPR004361 Glyoxalase I VagYM4_37640 IPR037523 Vicinal oxygen chelate (VOC) domain VagYM4_37680 IPR000644 CBS domain VagYM4_37680 IPR038076 MgtE, N-terminal domain superfamily VagYM4_37680 IPR038048 Magnesium transporter MgtE, transmembrane domain VagYM4_37680 IPR006669 Magnesium transporter MgtE VagYM4_37680 IPR006667 SLC41 divalent cation transporters, integral membrane domain VagYM4_37680 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily VagYM4_37680 IPR006668 Magnesium transporter, MgtE intracellular domain VagYM4_37720 IPR036821 Peptide deformylase superfamily VagYM4_37720 IPR023635 Peptide deformylase VagYM4_37730 IPR011789 Cu(I)-responsive transcriptional regulator VagYM4_37730 IPR009061 Putative DNA-binding domain superfamily VagYM4_37730 IPR015358 Transcription regulator MerR, DNA binding VagYM4_37730 IPR000551 MerR-type HTH domain VagYM4_37750 IPR036541 Phospholipase A1 superfamily VagYM4_37750 IPR003187 Phospholipase A1 VagYM4_37790 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_37790 IPR017871 ABC transporter, conserved site VagYM4_37790 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_37790 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_37790 IPR003593 AAA+ ATPase domain VagYM4_37790 IPR003439 ABC transporter-like VagYM4_37800 IPR036397 Ribonuclease H superfamily VagYM4_37800 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type VagYM4_37800 IPR003141 Polymerase/histidinol phosphatase, N-terminal VagYM4_37800 IPR012340 Nucleic acid-binding, OB-fold VagYM4_37800 IPR012337 Ribonuclease H-like superfamily VagYM4_37800 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain VagYM4_37800 IPR029460 DNA polymerase, helix-hairpin-helix motif VagYM4_37800 IPR024754 DNA polymerase III polC-like, N-terminal domain II VagYM4_37800 IPR040982 DNA polymerase III alpha subunit finger domain VagYM4_37800 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain VagYM4_37800 IPR013520 Exonuclease, RNase T/DNA polymerase III VagYM4_37800 IPR004013 PHP domain VagYM4_37850 IPR020449 Transcription regulator HTH, AraC- type VagYM4_37850 IPR017853 Glycoside hydrolase superfamily VagYM4_37850 IPR009057 Homeobox-like domain superfamily VagYM4_37850 IPR037923 Transcription regulator HTH-like VagYM4_37850 IPR018060 DNA binding HTH domain, AraC-type VagYM4_37860 IPR029032 AhpD-like VagYM4_37860 IPR004675 Alkylhydroperoxidase AhpD core VagYM4_37860 IPR003779 Carboxymuconolactone decarboxylase-like VagYM4_37870 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_37870 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VagYM4_37870 IPR037523 Vicinal oxygen chelate (VOC) domain VagYM4_37880 IPR036397 Ribonuclease H superfamily VagYM4_37880 IPR038965 Transposase InsF-like VagYM4_37880 IPR001584 Integrase, catalytic core VagYM4_37880 IPR012337 Ribonuclease H-like superfamily VagYM4_37890 IPR002514 Transposase IS3/IS911family VagYM4_37890 IPR009057 Homeobox-like domain superfamily VagYM4_37910 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_37910 IPR017116 Signal transduction histidine kinase, PgtB VagYM4_37910 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_37910 IPR005467 Histidine kinase domain VagYM4_37910 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_37910 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_37910 IPR003660 HAMP domain VagYM4_37920 IPR002197 DNA binding HTH domain, Fis-type VagYM4_37920 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_37920 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_37920 IPR009057 Homeobox-like domain superfamily VagYM4_37920 IPR011006 CheY-like superfamily VagYM4_37920 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_37920 IPR001789 Signal transduction response regulator, receiver domain VagYM4_37940 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA VagYM4_37940 IPR018211 Alcohol dehydrogenase, iron-type, conserved site VagYM4_37950 IPR018060 DNA binding HTH domain, AraC-type VagYM4_37950 IPR009594 Transcription regulator HTH, AraC, N-terminal VagYM4_37950 IPR009057 Homeobox-like domain superfamily VagYM4_37960 IPR017853 Glycoside hydrolase superfamily VagYM4_37960 IPR001223 Glycoside hydrolase family 18, catalytic domain VagYM4_37960 IPR029070 Chitinase insertion domain superfamily VagYM4_37960 IPR011583 Chitinase II VagYM4_37960 IPR009470 Chitinase, C-terminal VagYM4_37960 IPR036573 Carbohydrate-binding module superfamily 5/12 VagYM4_37960 IPR003610 Carbohydrate-binding module family 5/12 VagYM4_37960 IPR013783 Immunoglobulin-like fold VagYM4_37970 IPR011004 Trimeric LpxA-like superfamily VagYM4_37970 IPR011831 Glucose-1-phosphate adenylyltransferase VagYM4_37970 IPR005836 ADP-glucose pyrophosphorylase, conserved site VagYM4_37970 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial VagYM4_37970 IPR005835 Nucleotidyl transferase domain VagYM4_37970 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_37980 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_37980 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site VagYM4_37980 IPR000559 Formate-tetrahydrofolate ligase, FTHFS VagYM4_37990 IPR029056 Ribokinase-like VagYM4_37990 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site VagYM4_37990 IPR011611 Carbohydrate kinase PfkB VagYM4_38030 IPR036412 HAD-like superfamily VagYM4_38030 IPR041492 Haloacid dehalogenase-like hydrolase VagYM4_38030 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VagYM4_38030 IPR037512 Phosphoglycolate phosphatase, prokaryotic VagYM4_38030 IPR006439 HAD hydrolase, subfamily IA VagYM4_38030 IPR023214 HAD superfamily VagYM4_38040 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_38040 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_38060 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria VagYM4_38060 IPR007431 Acyl carrier protein phosphodiesterase VagYM4_38070 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_38070 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_38070 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_38070 IPR001650 Helicase, C-terminal VagYM4_38070 IPR011545 DEAD/DEAH box helicase domain VagYM4_38070 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_38070 IPR028622 ATP-dependent RNA helicase RhlE VagYM4_38080 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain VagYM4_38080 IPR001633 EAL domain VagYM4_38080 IPR035919 EAL domain superfamily VagYM4_38110 IPR016174 Di-haem cytochrome, transmembrane VagYM4_38110 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase VagYM4_38120 IPR023480 Uncharacterised protein family UPF0312/YceI VagYM4_38120 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily VagYM4_38120 IPR007372 Lipid/polyisoprenoid-binding, YceI-like VagYM4_38130 IPR023271 Aquaporin-like VagYM4_38130 IPR000292 Formate/nitrite transporter VagYM4_38130 IPR024002 Formate/nitrite transporter, conserved site VagYM4_38130 IPR023999 Formate transporter FocA, putative VagYM4_38140 IPR000847 Transcription regulator HTH, LysR VagYM4_38140 IPR005119 LysR, substrate-binding VagYM4_38140 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_38140 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_38150 IPR009476 Protein of unknown function DUF1097 VagYM4_38160 IPR022602 Protein of unknown function DUF2813 VagYM4_38160 IPR034139 OLD protein-like, TOPRIM domain VagYM4_38160 IPR006171 TOPRIM domain VagYM4_38160 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_38170 IPR008334 5'-Nucleotidase, C-terminal VagYM4_38170 IPR006146 5'-Nucleotidase, conserved site VagYM4_38170 IPR006179 5'-Nucleotidase/apyrase VagYM4_38170 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type VagYM4_38170 IPR029052 Metallo-dependent phosphatase-like VagYM4_38170 IPR006420 NAD pyrophosphatase/5-nucleotidase NadN VagYM4_38170 IPR036907 5'-Nucleotidase, C-terminal domain superfamily VagYM4_38190 IPR022369 Integral membrane protein TerC, riboswitch-linked VagYM4_38190 IPR005496 Integral membrane protein TerC VagYM4_38230 IPR025920 Bacterial virulence factor lipase, N-terminal domain VagYM4_38230 IPR020009 Extracellular lipase, Pla-1/cef family VagYM4_38230 IPR029058 Alpha/Beta hydrolase fold VagYM4_38240 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_38240 IPR042117 OMPP1/FadL/TodX superfamily VagYM4_38270 IPR029069 HotDog domain superfamily VagYM4_38270 IPR003736 Phenylacetic acid degradation-related domain VagYM4_38270 IPR006683 Thioesterase domain VagYM4_38290 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain VagYM4_38290 IPR000914 Solute-binding protein family 5 domain VagYM4_38290 IPR039424 Solute-binding protein family 5 VagYM4_38290 IPR023767 Transcriptional regulator SgrR VagYM4_38340 IPR008971 HSP40/DnaJ peptide-binding VagYM4_38340 IPR018253 DnaJ domain, conserved site VagYM4_38340 IPR001623 DnaJ domain VagYM4_38340 IPR036869 Chaperone J-domain superfamily VagYM4_38340 IPR012724 Chaperone DnaJ VagYM4_38340 IPR002939 Chaperone DnaJ, C-terminal VagYM4_38340 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily VagYM4_38340 IPR001305 Heat shock protein DnaJ, cysteine-rich domain VagYM4_38360 IPR001633 EAL domain VagYM4_38360 IPR008984 SMAD/FHA domain superfamily VagYM4_38360 IPR035919 EAL domain superfamily VagYM4_38360 IPR000253 Forkhead-associated (FHA) domain VagYM4_38360 IPR000160 GGDEF domain VagYM4_38360 IPR029787 Nucleotide cyclase VagYM4_38370 IPR010758 Trans-2-enoyl-CoA reductase VagYM4_38370 IPR036291 NAD(P)-binding domain superfamily VagYM4_38370 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative VagYM4_38370 IPR024906 Enoyl reductase FAD binding domain VagYM4_38380 IPR013830 SGNH hydrolase-type esterase domain VagYM4_38380 IPR036514 SGNH hydrolase superfamily VagYM4_38380 IPR008265 Lipase, GDSL, active site VagYM4_38390 IPR003593 AAA+ ATPase domain VagYM4_38390 IPR017871 ABC transporter, conserved site VagYM4_38390 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_38390 IPR003439 ABC transporter-like VagYM4_38400 IPR038766 Membrane component of ABC transporter, predicted VagYM4_38420 IPR003778 Carboxyltransferase domain, subdomain A and B VagYM4_38420 IPR029000 Cyclophilin-like domain superfamily VagYM4_38430 IPR003833 Carboxyltransferase domain, subdomain C and D VagYM4_38430 IPR010016 KipI family VagYM4_38430 IPR029000 Cyclophilin-like domain superfamily VagYM4_38440 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel VagYM4_38440 IPR005501 LamB/YcsF/PxpA-like VagYM4_38450 IPR013655 PAS fold-3 VagYM4_38450 IPR029787 Nucleotide cyclase VagYM4_38450 IPR013656 PAS fold-4 VagYM4_38450 IPR035965 PAS domain superfamily VagYM4_38450 IPR000700 PAS-associated, C-terminal VagYM4_38450 IPR000014 PAS domain VagYM4_38450 IPR001610 PAC motif VagYM4_38450 IPR007895 MASE1 VagYM4_38450 IPR000160 GGDEF domain VagYM4_38450 IPR035919 EAL domain superfamily VagYM4_38450 IPR001633 EAL domain VagYM4_38460 IPR005886 UDP-glucose 4-epimerase VagYM4_38460 IPR016040 NAD(P)-binding domain VagYM4_38460 IPR036291 NAD(P)-binding domain superfamily VagYM4_38470 IPR010917 TonB-dependent receptor, conserved site VagYM4_38470 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor VagYM4_38470 IPR039426 Vitamin B12 transporter BtuB-like VagYM4_38470 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_38470 IPR012910 TonB-dependent receptor, plug domain VagYM4_38470 IPR006970 PT repeat VagYM4_38470 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_38470 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_38480 IPR005119 LysR, substrate-binding VagYM4_38480 IPR000847 Transcription regulator HTH, LysR VagYM4_38480 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_38480 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_38490 IPR000182 GNAT domain VagYM4_38490 IPR016181 Acyl-CoA N-acyltransferase VagYM4_38490 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain VagYM4_38490 IPR036291 NAD(P)-binding domain superfamily VagYM4_38490 IPR011761 ATP-grasp fold VagYM4_38490 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_38490 IPR003781 CoA-binding VagYM4_38490 IPR016102 Succinyl-CoA synthetase-like VagYM4_38500 IPR036680 Sporulation-like domain superfamily VagYM4_38500 IPR007730 Sporulation-like domain VagYM4_38510 IPR011761 ATP-grasp fold VagYM4_38510 IPR011095 D-alanine--D-alanine ligase, C-terminal VagYM4_38510 IPR005905 D-alanine--D-alanine ligase VagYM4_38510 IPR011127 D-alanine--D-alanine ligase, N-terminal domain VagYM4_38510 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site VagYM4_38510 IPR016185 Pre-ATP-grasp domain superfamily VagYM4_38510 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_38530 IPR036877 SUI1 domain superfamily VagYM4_38530 IPR005872 Archaeal/bacterial translation initiation factor SUI1 VagYM4_38530 IPR001950 SUI1 domain VagYM4_38550 IPR008900 Zona occludens toxin, N-terminal VagYM4_38650 IPR008900 Zona occludens toxin, N-terminal VagYM4_38770 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_38770 IPR000847 Transcription regulator HTH, LysR VagYM4_38770 IPR005119 LysR, substrate-binding VagYM4_38770 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_38790 IPR006016 UspA VagYM4_38790 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_38790 IPR006015 Universal stress protein A family VagYM4_38800 IPR005371 Uncharacterised protein family UPF0181 VagYM4_38830 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_38830 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_38830 IPR001789 Signal transduction response regulator, receiver domain VagYM4_38830 IPR011006 CheY-like superfamily VagYM4_38830 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_38850 IPR034300 NADP transhydrogenase beta-like domain VagYM4_38850 IPR012136 NADP transhydrogenase, beta subunit VagYM4_38850 IPR029035 DHS-like NAD/FAD-binding domain superfamily VagYM4_38860 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal VagYM4_38860 IPR026255 NAD(P) transhydrogenase, alpha subunit VagYM4_38860 IPR036291 NAD(P)-binding domain superfamily VagYM4_38860 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain VagYM4_38860 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 VagYM4_38860 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 VagYM4_38860 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal VagYM4_38890 IPR011006 CheY-like superfamily VagYM4_38890 IPR000160 GGDEF domain VagYM4_38890 IPR029787 Nucleotide cyclase VagYM4_38890 IPR001789 Signal transduction response regulator, receiver domain VagYM4_38910 IPR000160 GGDEF domain VagYM4_38910 IPR016132 Phytochrome chromophore attachment domain VagYM4_38910 IPR001294 Phytochrome VagYM4_38910 IPR013515 Phytochrome, central region VagYM4_38910 IPR001633 EAL domain VagYM4_38910 IPR029016 GAF-like domain superfamily VagYM4_38910 IPR003018 GAF domain VagYM4_38910 IPR035919 EAL domain superfamily VagYM4_38910 IPR029787 Nucleotide cyclase VagYM4_38930 IPR003439 ABC transporter-like VagYM4_38930 IPR004606 Molybdenum-pterin binding VagYM4_38930 IPR011868 Molybdate ABC transporter, ATP-binding protein VagYM4_38930 IPR008995 Molybdate/tungstate binding, C-terminal VagYM4_38930 IPR015852 ABC transporter, molybdenum import, ModC VagYM4_38930 IPR017871 ABC transporter, conserved site VagYM4_38930 IPR005116 Transport-associated OB, type 1 VagYM4_38930 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_38930 IPR003593 AAA+ ATPase domain VagYM4_38940 IPR011867 Molybdate ABC transporter, permease protein VagYM4_38940 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_38940 IPR035906 MetI-like superfamily VagYM4_38950 IPR005950 Molybdate ABC transporter, substrate-binding protein VagYM4_38960 IPR004459 Cobyric acid synthase CobQ VagYM4_38960 IPR029062 Class I glutamine amidotransferase-like VagYM4_38960 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_38960 IPR033949 Cobyric acid synthase, glutamine amidotransferase type 1 VagYM4_38960 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain VagYM4_38960 IPR017929 CobB/CobQ glutamine amidotransferase VagYM4_38960 IPR011698 CobB/CobQ-like glutamine amidotransferase VagYM4_38990 IPR021109 Aspartic peptidase domain superfamily VagYM4_38990 IPR011761 ATP-grasp fold VagYM4_38990 IPR013651 ATP-grasp fold, RimK-type VagYM4_38990 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX VagYM4_38990 IPR013815 ATP-grasp fold, subdomain 1 VagYM4_38990 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK VagYM4_38990 IPR041107 RimK, PreATP-grasp domain VagYM4_39000 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_39000 IPR000796 Aspartate/other aminotransferase VagYM4_39000 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_39000 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_39000 IPR004839 Aminotransferase, class I/classII VagYM4_39010 IPR020449 Transcription regulator HTH, AraC- type VagYM4_39010 IPR032783 AraC-type transcription regulator, ligand-binding domain VagYM4_39010 IPR011051 RmlC-like cupin domain superfamily VagYM4_39010 IPR018060 DNA binding HTH domain, AraC-type VagYM4_39010 IPR009057 Homeobox-like domain superfamily VagYM4_39020 IPR002528 Multi antimicrobial extrusion protein VagYM4_39030 IPR001989 Radical-activating enzyme, conserved site VagYM4_39030 IPR034457 Organic radical-activating enzymes VagYM4_39030 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic VagYM4_39030 IPR013785 Aldolase-type TIM barrel VagYM4_39030 IPR007197 Radical SAM VagYM4_39040 IPR005144 ATP-cone domain VagYM4_39040 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VagYM4_39040 IPR001150 Glycine radical domain VagYM4_39040 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic VagYM4_39060 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_39060 IPR006143 RND efflux pump, membrane fusion protein VagYM4_39070 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_39070 IPR001036 Acriflavin resistance protein VagYM4_39070 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 VagYM4_39090 IPR007272 Sulphur transport domain VagYM4_39120 IPR023536 Coenzyme A disulphide reductase, staphyolococci VagYM4_39120 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_39120 IPR023753 FAD/NAD(P)-binding domain VagYM4_39120 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily VagYM4_39120 IPR017758 Coenzyme A disulphide reductase VagYM4_39120 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_39130 IPR015942 Asp/Glu/hydantoin racemase VagYM4_39130 IPR018187 Asp/Glu racemase, active site 1 VagYM4_39130 IPR001920 Asp/Glu racemase VagYM4_39130 IPR033134 Asp/Glu racemase, active site 2 VagYM4_39130 IPR004380 Aspartate racemase VagYM4_39140 IPR003719 Phenazine biosynthesis PhzF protein VagYM4_39160 IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain VagYM4_39160 IPR010046 Oxidoreductase alpha (molybdopterin) subunit VagYM4_39160 IPR006656 Molybdopterin oxidoreductase VagYM4_39160 IPR037951 YdeP-like, MopB domain VagYM4_39160 IPR009010 Aspartate decarboxylase-like domain superfamily VagYM4_39170 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_39170 IPR005119 LysR, substrate-binding VagYM4_39170 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_39170 IPR000847 Transcription regulator HTH, LysR VagYM4_39180 IPR016193 Cytidine deaminase-like VagYM4_39180 IPR003786 Sulfur carrier protein FdhD VagYM4_39190 IPR011701 Major facilitator superfamily VagYM4_39190 IPR020846 Major facilitator superfamily domain VagYM4_39190 IPR036259 MFS transporter superfamily VagYM4_39190 IPR000849 Sugar phosphate transporter VagYM4_39190 IPR021159 Glycerate/sugar phosphate transporter, conserved site VagYM4_39200 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_39200 IPR001789 Signal transduction response regulator, receiver domain VagYM4_39200 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_39200 IPR011006 CheY-like superfamily VagYM4_39210 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain VagYM4_39210 IPR007895 MASE1 VagYM4_39210 IPR005467 Histidine kinase domain VagYM4_39210 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_39210 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_39220 IPR000849 Sugar phosphate transporter VagYM4_39220 IPR021159 Glycerate/sugar phosphate transporter, conserved site VagYM4_39220 IPR036259 MFS transporter superfamily VagYM4_39220 IPR020846 Major facilitator superfamily domain VagYM4_39220 IPR011701 Major facilitator superfamily VagYM4_39230 IPR001250 Mannose-6-phosphate isomerase, type I VagYM4_39230 IPR018050 Phosphomannose isomerase, type I, conserved site VagYM4_39230 IPR014710 RmlC-like jelly roll fold VagYM4_39230 IPR011051 RmlC-like cupin domain superfamily VagYM4_39230 IPR016305 Mannose-6-phosphate isomerase VagYM4_39270 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM4_39270 IPR016039 Thiolase-like VagYM4_39270 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 VagYM4_39270 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal VagYM4_39280 IPR036249 Thioredoxin-like superfamily VagYM4_39280 IPR013766 Thioredoxin domain VagYM4_39280 IPR017937 Thioredoxin, conserved site VagYM4_39280 IPR005746 Thioredoxin VagYM4_39290 IPR036259 MFS transporter superfamily VagYM4_39290 IPR023745 MSF-type transporter, YcaD VagYM4_39290 IPR020846 Major facilitator superfamily domain VagYM4_39290 IPR011701 Major facilitator superfamily VagYM4_39300 IPR020483 Uncharacterised protein family YgbA VagYM4_39330 IPR012910 TonB-dependent receptor, plug domain VagYM4_39330 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_39330 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_39330 IPR010917 TonB-dependent receptor, conserved site VagYM4_39330 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_39330 IPR039426 Vitamin B12 transporter BtuB-like VagYM4_39330 IPR010916 TonB box, conserved site VagYM4_39330 IPR010105 TonB-dependent siderophore receptor VagYM4_39350 IPR004668 Anaerobic c4-dicarboxylate membrane transporter VagYM4_39380 IPR036291 NAD(P)-binding domain superfamily VagYM4_39380 IPR006366 Uroporphyrin-III C-methyltransferase VagYM4_39380 IPR035996 Tetrapyrrole methylase superfamily VagYM4_39380 IPR014776 Tetrapyrrole methylase, subdomain 2 VagYM4_39380 IPR014777 Tetrapyrrole methylase, subdomain 1 VagYM4_39380 IPR012409 Sirohaem synthase VagYM4_39380 IPR037115 Sirohaem synthase, dimerisation domain superfamily VagYM4_39380 IPR000878 Tetrapyrrole methylase VagYM4_39380 IPR028281 Siroheme synthase, central domain VagYM4_39380 IPR019478 Sirohaem synthase, dimerisation domain VagYM4_39380 IPR006367 Sirohaem synthase, N-terminal VagYM4_39380 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site VagYM4_39390 IPR023999 Formate transporter FocA, putative VagYM4_39390 IPR024002 Formate/nitrite transporter, conserved site VagYM4_39390 IPR000292 Formate/nitrite transporter VagYM4_39390 IPR023271 Aquaporin-like VagYM4_39400 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type VagYM4_39400 IPR017881 Nitrite reductase (NADH) small subunit VagYM4_39400 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily VagYM4_39410 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily VagYM4_39410 IPR023753 FAD/NAD(P)-binding domain VagYM4_39410 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain VagYM4_39410 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily VagYM4_39410 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB VagYM4_39410 IPR007419 BFD-like [2Fe-2S]-binding domain VagYM4_39410 IPR017121 Nitrite reductase [NAD(P)H], large subunit VagYM4_39410 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_39410 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain VagYM4_39410 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site VagYM4_39410 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal VagYM4_39420 IPR028625 Regulator of nucleoside diphosphate kinase VagYM4_39420 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal VagYM4_39420 IPR023459 Transcription elongation factor GreA/GreB family VagYM4_39420 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain VagYM4_39420 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily VagYM4_39430 IPR000160 GGDEF domain VagYM4_39430 IPR035965 PAS domain superfamily VagYM4_39430 IPR035919 EAL domain superfamily VagYM4_39430 IPR001633 EAL domain VagYM4_39430 IPR000014 PAS domain VagYM4_39430 IPR029787 Nucleotide cyclase VagYM4_39510 IPR013776 Alpha-amylase, thermostable VagYM4_39510 IPR015237 Alpha-amylase C-terminal, prokaryotic VagYM4_39510 IPR013780 Glycosyl hydrolase, all-beta VagYM4_39510 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_39510 IPR017853 Glycoside hydrolase superfamily VagYM4_39520 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_39520 IPR003660 HAMP domain VagYM4_39520 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_39530 IPR029066 PLP-binding barrel VagYM4_39530 IPR000821 Alanine racemase VagYM4_39530 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal VagYM4_39530 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site VagYM4_39530 IPR011079 Alanine racemase, C-terminal VagYM4_39530 IPR001608 Alanine racemase, N-terminal VagYM4_39560 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_39560 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_39560 IPR005119 LysR, substrate-binding VagYM4_39560 IPR000847 Transcription regulator HTH, LysR VagYM4_39570 IPR026956 D-serine dehydratase-like domain VagYM4_39570 IPR042208 D-serine dehydratase-like domain superfamily VagYM4_39570 IPR001608 Alanine racemase, N-terminal VagYM4_39570 IPR029066 PLP-binding barrel VagYM4_39580 IPR036291 NAD(P)-binding domain superfamily VagYM4_39580 IPR023401 Ornithine cyclodeaminase, N-terminal VagYM4_39580 IPR003462 Ornithine cyclodeaminase/mu-crystallin VagYM4_39600 IPR006094 FAD linked oxidase, N-terminal VagYM4_39600 IPR016164 FAD-linked oxidase-like, C-terminal VagYM4_39600 IPR016169 FAD-binding, type PCMH, subdomain 2 VagYM4_39600 IPR016167 FAD-binding, type PCMH, subdomain 1 VagYM4_39600 IPR016166 FAD-binding domain, PCMH-type VagYM4_39600 IPR012256 D-lactate dehydrogenase VagYM4_39600 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 VagYM4_39600 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 VagYM4_39600 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal VagYM4_39600 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_39610 IPR005119 LysR, substrate-binding VagYM4_39610 IPR000847 Transcription regulator HTH, LysR VagYM4_39610 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_39610 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_39620 IPR002035 von Willebrand factor, type A VagYM4_39620 IPR036465 von Willebrand factor A-like domain superfamily VagYM4_39620 IPR023481 Uncharacterised protein family ViaA VagYM4_39620 IPR008912 Uncharacterised protein family CoxE-like VagYM4_39630 IPR041538 ATPase RavA-like, AAA lid domain VagYM4_39630 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_39630 IPR022547 ATPase, RavA, C-terminal VagYM4_39630 IPR023671 ATPase RavA VagYM4_39630 IPR011704 ATPase, dynein-related, AAA domain VagYM4_39630 IPR003593 AAA+ ATPase domain VagYM4_39650 IPR023603 Threonine aldolase VagYM4_39650 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_39650 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase VagYM4_39650 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_39650 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_39660 IPR024167 Cytochrome c4-like VagYM4_39660 IPR009056 Cytochrome c-like domain VagYM4_39660 IPR036909 Cytochrome c-like domain superfamily VagYM4_39670 IPR018385 C4-dicarboxylate anaerobic carrier-like VagYM4_39690 IPR022271 Lipocalin, ApoD type VagYM4_39690 IPR000566 Lipocalin/cytosolic fatty-acid binding domain VagYM4_39690 IPR012674 Calycin VagYM4_39690 IPR002446 Lipocalin, bacterial VagYM4_39690 IPR022272 Lipocalin family conserved site VagYM4_39710 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_39710 IPR038729 Rad50/SbcC-type AAA domain VagYM4_39720 IPR029052 Metallo-dependent phosphatase-like VagYM4_39720 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type VagYM4_39720 IPR026843 Nuclease SbcCD subunit D, C-terminal domain VagYM4_39720 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain VagYM4_39720 IPR004593 Nuclease SbcCD subunit D VagYM4_39750 IPR037026 Vgr protein, OB-fold domain superfamily VagYM4_39750 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein VagYM4_39750 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset VagYM4_39750 IPR006531 Gp5 N-terminal VagYM4_39750 IPR032074 Actin cross-linking domain VagYM4_39770 IPR019489 Clp ATPase, C-terminal VagYM4_39770 IPR041546 ClpA/ClpB, AAA lid domain VagYM4_39770 IPR018368 ClpA/B, conserved site 1 VagYM4_39770 IPR001270 ClpA/B family VagYM4_39770 IPR004176 Clp, N-terminal VagYM4_39770 IPR036628 Clp, N-terminal domain superfamily VagYM4_39770 IPR017729 Type VI secretion system, ATPase ClpV1 VagYM4_39770 IPR003959 ATPase, AAA-type, core VagYM4_39770 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_39770 IPR003593 AAA+ ATPase domain VagYM4_39860 IPR015655 Protein phosphatase 2C family VagYM4_39860 IPR001932 PPM-type phosphatase domain VagYM4_39860 IPR036457 PPM-type phosphatase domain superfamily VagYM4_39890 IPR025713 Motility protein B, N-terminal domain VagYM4_39890 IPR006665 OmpA-like domain VagYM4_39890 IPR036737 OmpA-like domain superfamily VagYM4_39930 IPR008271 Serine/threonine-protein kinase, active site VagYM4_39930 IPR017441 Protein kinase, ATP binding site VagYM4_39930 IPR000719 Protein kinase domain VagYM4_39930 IPR011009 Protein kinase-like domain superfamily VagYM4_39930 IPR005543 PASTA domain VagYM4_39970 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_39970 IPR011006 CheY-like superfamily VagYM4_39970 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_39970 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_39970 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_39970 IPR001789 Signal transduction response regulator, receiver domain VagYM4_39990 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VagYM4_39990 IPR004045 Glutathione S-transferase, N-terminal VagYM4_39990 IPR004046 Glutathione S-transferase, C-terminal VagYM4_39990 IPR036249 Thioredoxin-like superfamily VagYM4_39990 IPR010987 Glutathione S-transferase, C-terminal-like VagYM4_40000 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_40000 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_40000 IPR009057 Homeobox-like domain superfamily VagYM4_40000 IPR023772 DNA-binding HTH domain, TetR-type, conserved site VagYM4_40000 IPR013572 Transcription regulator MAATS, C-terminal VagYM4_40030 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_40030 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal VagYM4_40030 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily VagYM4_40030 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily VagYM4_40030 IPR007419 BFD-like [2Fe-2S]-binding domain VagYM4_40030 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain VagYM4_40030 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site VagYM4_40030 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type VagYM4_40030 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily VagYM4_40030 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain VagYM4_40030 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB VagYM4_40030 IPR023753 FAD/NAD(P)-binding domain VagYM4_40040 IPR005890 Nitrate transport ATP-binding subunit C/D VagYM4_40040 IPR017871 ABC transporter, conserved site VagYM4_40040 IPR003439 ABC transporter-like VagYM4_40040 IPR003593 AAA+ ATPase domain VagYM4_40040 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_40050 IPR005889 Nitrate transport permease VagYM4_40050 IPR035906 MetI-like superfamily VagYM4_40050 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_40060 IPR017871 ABC transporter, conserved site VagYM4_40060 IPR005890 Nitrate transport ATP-binding subunit C/D VagYM4_40060 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_40060 IPR003439 ABC transporter-like VagYM4_40060 IPR003593 AAA+ ATPase domain VagYM4_40070 IPR005561 ANTAR domain VagYM4_40070 IPR011006 CheY-like superfamily VagYM4_40070 IPR008327 Signal transduction response regulator, antiterminator VagYM4_40070 IPR001789 Signal transduction response regulator, receiver domain VagYM4_40070 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_40080 IPR029058 Alpha/Beta hydrolase fold VagYM4_40080 IPR002925 Dienelactone hydrolase VagYM4_40090 IPR005940 Anthranilate phosphoribosyl transferase VagYM4_40090 IPR000312 Glycosyl transferase, family 3 VagYM4_40090 IPR017459 Glycosyl transferase family 3, N-terminal domain VagYM4_40090 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily VagYM4_40090 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily VagYM4_40100 IPR035996 Tetrapyrrole methylase superfamily VagYM4_40100 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site VagYM4_40100 IPR006367 Sirohaem synthase, N-terminal VagYM4_40100 IPR019478 Sirohaem synthase, dimerisation domain VagYM4_40100 IPR012409 Sirohaem synthase VagYM4_40100 IPR014777 Tetrapyrrole methylase, subdomain 1 VagYM4_40100 IPR014776 Tetrapyrrole methylase, subdomain 2 VagYM4_40100 IPR006366 Uroporphyrin-III C-methyltransferase VagYM4_40100 IPR036291 NAD(P)-binding domain superfamily VagYM4_40100 IPR000878 Tetrapyrrole methylase VagYM4_40100 IPR037115 Sirohaem synthase, dimerisation domain superfamily VagYM4_40100 IPR028281 Siroheme synthase, central domain VagYM4_40110 IPR009010 Aspartate decarboxylase-like domain superfamily VagYM4_40110 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site VagYM4_40110 IPR006657 Molybdopterin dinucleotide-binding domain VagYM4_40110 IPR006656 Molybdopterin oxidoreductase VagYM4_40110 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain VagYM4_40130 IPR004694 Hydroxy amino acid transporter VagYM4_40130 IPR018227 Amino acid/polyamine transporter 2 VagYM4_40150 IPR029787 Nucleotide cyclase VagYM4_40150 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region VagYM4_40150 IPR000160 GGDEF domain VagYM4_40170 IPR015500 Peptidase S8, subtilisin-related VagYM4_40170 IPR023828 Peptidase S8, subtilisin, Ser-active site VagYM4_40170 IPR023827 Peptidase S8, subtilisin, Asp-active site VagYM4_40170 IPR000209 Peptidase S8/S53 domain VagYM4_40170 IPR002884 P domain VagYM4_40170 IPR008979 Galactose-binding-like domain superfamily VagYM4_40170 IPR036852 Peptidase S8/S53 domain superfamily VagYM4_40210 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_40210 IPR001789 Signal transduction response regulator, receiver domain VagYM4_40210 IPR011006 CheY-like superfamily VagYM4_40210 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_40210 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_40210 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_40250 IPR007410 Copper chaperone PCuAC VagYM4_40250 IPR036182 Copper chaperone PCuAC superfamily VagYM4_40260 IPR042054 YegD-like VagYM4_40260 IPR013126 Heat shock protein 70 family VagYM4_40260 IPR018181 Heat shock protein 70, conserved site VagYM4_40290 IPR029061 Thiamin diphosphate-binding fold VagYM4_40290 IPR001017 Dehydrogenase, E1 component VagYM4_40290 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha VagYM4_40300 IPR033248 Transketolase, C-terminal domain VagYM4_40300 IPR029061 Thiamin diphosphate-binding fold VagYM4_40300 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II VagYM4_40300 IPR005475 Transketolase-like, pyrimidine-binding domain VagYM4_40310 IPR011053 Single hybrid motif VagYM4_40310 IPR004167 Peripheral subunit-binding domain VagYM4_40310 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily VagYM4_40310 IPR036625 E3-binding domain superfamily VagYM4_40310 IPR000089 Biotin/lipoyl attachment VagYM4_40310 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain VagYM4_40310 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site VagYM4_40320 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_40320 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site VagYM4_40320 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal VagYM4_40320 IPR001308 Electron transfer flavoprotein alpha subunit/FixB VagYM4_40320 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal VagYM4_40320 IPR029035 DHS-like NAD/FAD-binding domain superfamily VagYM4_40320 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal VagYM4_40330 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_40330 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_40330 IPR040156 Electron transfer flavoprotein-ubiquinone oxidoreductase VagYM4_40360 IPR006665 OmpA-like domain VagYM4_40360 IPR002368 Outer membrane protein, OmpA VagYM4_40360 IPR006664 Outer membrane protein, bacterial VagYM4_40360 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel VagYM4_40360 IPR000498 Outer membrane protein OmpA-like, transmembrane domain VagYM4_40360 IPR036737 OmpA-like domain superfamily VagYM4_40360 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_40390 IPR035906 MetI-like superfamily VagYM4_40390 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_40390 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain VagYM4_40400 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain VagYM4_40400 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_40400 IPR035906 MetI-like superfamily VagYM4_40410 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter VagYM4_40410 IPR018313 Solute-binding protein family 3, conserved site VagYM4_40410 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_40410 IPR001320 Ionotropic glutamate receptor VagYM4_40420 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_40420 IPR017871 ABC transporter, conserved site VagYM4_40420 IPR003439 ABC transporter-like VagYM4_40420 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type VagYM4_40420 IPR003593 AAA+ ATPase domain VagYM4_40480 IPR000060 BCCT transporter family VagYM4_40500 IPR015590 Aldehyde dehydrogenase domain VagYM4_40500 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_40500 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_40500 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_40500 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_40500 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_40530 IPR016167 FAD-binding, type PCMH, subdomain 1 VagYM4_40530 IPR016169 FAD-binding, type PCMH, subdomain 2 VagYM4_40530 IPR012951 Berberine/berberine-like VagYM4_40530 IPR016166 FAD-binding domain, PCMH-type VagYM4_40530 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_40530 IPR006093 Oxygen oxidoreductase covalent FAD-binding site VagYM4_40530 IPR016164 FAD-linked oxidase-like, C-terminal VagYM4_40530 IPR006094 FAD linked oxidase, N-terminal VagYM4_40540 IPR023753 FAD/NAD(P)-binding domain VagYM4_40540 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_40540 IPR013785 Aldolase-type TIM barrel VagYM4_40540 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal VagYM4_40560 IPR006369 Protohaem IX farnesyltransferase VagYM4_40560 IPR030470 UbiA prenyltransferase conserved site VagYM4_40560 IPR000537 UbiA prenyltransferase family VagYM4_40580 IPR035973 Cytochrome c oxidase subunit III-like superfamily VagYM4_40580 IPR033946 Ubiquinol oxidase subunit III domain VagYM4_40580 IPR014206 Cytochrome o ubiquinol oxidase, subunit III VagYM4_40580 IPR000298 Cytochrome c oxidase subunit III-like VagYM4_40580 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle VagYM4_40580 IPR024791 Cytochrome c oxidase subunit III VagYM4_40590 IPR014207 Cytochrome o ubiquinol oxidase, subunit I VagYM4_40590 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site VagYM4_40590 IPR000883 Cytochrome c oxidase subunit I VagYM4_40590 IPR036927 Cytochrome c oxidase-like, subunit I superfamily VagYM4_40590 IPR023616 Cytochrome c oxidase-like, subunit I domain VagYM4_40600 IPR008972 Cupredoxin VagYM4_40600 IPR010514 COX aromatic rich motif VagYM4_40600 IPR002429 Cytochrome c oxidase subunit II-like C-terminal VagYM4_40600 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain VagYM4_40600 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain VagYM4_40600 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily VagYM4_40600 IPR006333 Cytochrome o ubiquinol oxidase subunit II VagYM4_40610 IPR002347 Short-chain dehydrogenase/reductase SDR VagYM4_40610 IPR036291 NAD(P)-binding domain superfamily VagYM4_40610 IPR020904 Short-chain dehydrogenase/reductase, conserved site VagYM4_40610 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase VagYM4_40620 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_40620 IPR036291 NAD(P)-binding domain superfamily VagYM4_40620 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain VagYM4_40620 IPR015815 3-hydroxyisobutyrate dehydrogenase-related VagYM4_40620 IPR011548 3-hydroxyisobutyrate dehydrogenase VagYM4_40620 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site VagYM4_40620 IPR013328 6-phosphogluconate dehydrogenase, domain 2 VagYM4_40620 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding VagYM4_40630 IPR014748 Enoyl-CoA hydratase, C-terminal VagYM4_40630 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_40630 IPR001753 Enoyl-CoA hydratase/isomerase VagYM4_40630 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site VagYM4_40640 IPR001753 Enoyl-CoA hydratase/isomerase VagYM4_40640 IPR014748 Enoyl-CoA hydratase, C-terminal VagYM4_40640 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_40640 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site VagYM4_40650 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain VagYM4_40650 IPR006089 Acyl-CoA dehydrogenase, conserved site VagYM4_40650 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily VagYM4_40650 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily VagYM4_40650 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal VagYM4_40650 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal VagYM4_40650 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal VagYM4_40660 IPR010061 Methylmalonate-semialdehyde dehydrogenase VagYM4_40660 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_40660 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_40660 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_40660 IPR015590 Aldehyde dehydrogenase domain VagYM4_40660 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_40670 IPR020617 Thiolase, C-terminal VagYM4_40670 IPR020613 Thiolase, conserved site VagYM4_40670 IPR016039 Thiolase-like VagYM4_40670 IPR020610 Thiolase, active site VagYM4_40670 IPR002155 Thiolase VagYM4_40670 IPR020616 Thiolase, N-terminal VagYM4_40670 IPR020615 Thiolase, acyl-enzyme intermediate active site VagYM4_40680 IPR011789 Cu(I)-responsive transcriptional regulator VagYM4_40680 IPR015358 Transcription regulator MerR, DNA binding VagYM4_40680 IPR000551 MerR-type HTH domain VagYM4_40680 IPR009061 Putative DNA-binding domain superfamily VagYM4_40690 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily VagYM4_40690 IPR006089 Acyl-CoA dehydrogenase, conserved site VagYM4_40690 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal VagYM4_40690 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily VagYM4_40690 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal VagYM4_40690 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal VagYM4_40690 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain VagYM4_40700 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal VagYM4_40700 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal VagYM4_40700 IPR034733 Acetyl-CoA carboxylase VagYM4_40700 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_40710 IPR001753 Enoyl-CoA hydratase/isomerase VagYM4_40710 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_40710 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site VagYM4_40710 IPR014748 Enoyl-CoA hydratase, C-terminal VagYM4_40720 IPR000891 Pyruvate carboxyltransferase VagYM4_40720 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site VagYM4_40720 IPR013785 Aldolase-type TIM barrel VagYM4_40730 IPR019275 Protein of unknown function DUF2301 VagYM4_40750 IPR006094 FAD linked oxidase, N-terminal VagYM4_40750 IPR036318 FAD-binding, type PCMH-like superfamily VagYM4_40750 IPR004113 FAD-linked oxidase, C-terminal VagYM4_40750 IPR016164 FAD-linked oxidase-like, C-terminal VagYM4_40750 IPR016166 FAD-binding domain, PCMH-type VagYM4_40750 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_40750 IPR009051 Alpha-helical ferredoxin VagYM4_40750 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_40760 IPR032466 Metal-dependent hydrolase VagYM4_40760 IPR006680 Amidohydrolase-related VagYM4_40770 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_40770 IPR029058 Alpha/Beta hydrolase fold VagYM4_40780 IPR002818 DJ-1/PfpI VagYM4_40780 IPR029062 Class I glutamine amidotransferase-like VagYM4_40780 IPR009057 Homeobox-like domain superfamily VagYM4_40780 IPR018060 DNA binding HTH domain, AraC-type VagYM4_40780 IPR018062 HTH domain AraC-type, conserved site VagYM4_40810 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain VagYM4_40820 IPR035906 MetI-like superfamily VagYM4_40820 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_40830 IPR003439 ABC transporter-like VagYM4_40830 IPR017871 ABC transporter, conserved site VagYM4_40830 IPR003593 AAA+ ATPase domain VagYM4_40830 IPR000644 CBS domain VagYM4_40830 IPR005892 Glycine betaine transport ATP-binding subunit VagYM4_40830 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_40840 IPR035906 MetI-like superfamily VagYM4_40840 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_40850 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_40850 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_40850 IPR001610 PAC motif VagYM4_40850 IPR000014 PAS domain VagYM4_40850 IPR000700 PAS-associated, C-terminal VagYM4_40850 IPR035965 PAS domain superfamily VagYM4_40850 IPR013655 PAS fold-3 VagYM4_40860 IPR000890 Aliphatic acid kinase, short-chain VagYM4_40860 IPR023865 Aliphatic acid kinase, short-chain, conserved site VagYM4_40860 IPR004372 Acetate/propionate kinase VagYM4_40870 IPR029787 Nucleotide cyclase VagYM4_40870 IPR001633 EAL domain VagYM4_40870 IPR000160 GGDEF domain VagYM4_40870 IPR005330 MHYT domain VagYM4_40870 IPR035919 EAL domain superfamily VagYM4_40880 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_40880 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_40880 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_40880 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain VagYM4_40880 IPR011545 DEAD/DEAH box helicase domain VagYM4_40880 IPR028618 ATP-dependent RNA helicase DeaD VagYM4_40880 IPR034415 CsdA, RNA recognition motif VagYM4_40880 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_40880 IPR001650 Helicase, C-terminal VagYM4_40880 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily VagYM4_40890 IPR004476 Ribonuclease II/ribonuclease R VagYM4_40890 IPR001900 Ribonuclease II/R VagYM4_40890 IPR011804 Ribonuclease II VagYM4_40890 IPR013223 Ribonuclease B, N-terminal OB domain VagYM4_40890 IPR012340 Nucleic acid-binding, OB-fold VagYM4_40890 IPR011129 Cold shock domain VagYM4_40890 IPR003029 S1 domain VagYM4_40890 IPR022966 Ribonuclease II/R, conserved site VagYM4_40900 IPR037923 Transcription regulator HTH-like VagYM4_40900 IPR020449 Transcription regulator HTH, AraC- type VagYM4_40900 IPR017853 Glycoside hydrolase superfamily VagYM4_40900 IPR009057 Homeobox-like domain superfamily VagYM4_40900 IPR018060 DNA binding HTH domain, AraC-type VagYM4_40920 IPR024370 PBP domain VagYM4_40920 IPR011862 Phosphate binding protein VagYM4_40930 IPR002539 MaoC-like dehydratase domain VagYM4_40930 IPR029069 HotDog domain superfamily VagYM4_40930 IPR039375 Nodulation protein N-like VagYM4_40940 IPR013655 PAS fold-3 VagYM4_40940 IPR000014 PAS domain VagYM4_40940 IPR001610 PAC motif VagYM4_40940 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_40940 IPR003660 HAMP domain VagYM4_40940 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_40940 IPR035965 PAS domain superfamily VagYM4_40950 IPR003439 ABC transporter-like VagYM4_40950 IPR003593 AAA+ ATPase domain VagYM4_40950 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_40960 IPR035919 EAL domain superfamily VagYM4_40960 IPR001633 EAL domain VagYM4_40960 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain VagYM4_41010 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_41010 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_41010 IPR001650 Helicase, C-terminal VagYM4_41010 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_41010 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_41010 IPR028622 ATP-dependent RNA helicase RhlE VagYM4_41010 IPR011545 DEAD/DEAH box helicase domain VagYM4_41020 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal VagYM4_41020 IPR003495 CobW/HypB/UreG, nucleotide-binding domain VagYM4_41020 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_41040 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like VagYM4_41040 IPR033694 Pyroglutamyl peptidase I, Cys active site VagYM4_41040 IPR029762 Pyroglutamyl peptidase I, bacterial-type VagYM4_41040 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily VagYM4_41040 IPR033693 Pyroglutamyl peptidase I, Glu active site VagYM4_41040 IPR000816 Peptidase C15, pyroglutamyl peptidase I VagYM4_41060 IPR002059 Cold-shock protein, DNA-binding VagYM4_41060 IPR019844 Cold-shock (CSD) domain VagYM4_41060 IPR012156 Cold shock, CspA VagYM4_41060 IPR012340 Nucleic acid-binding, OB-fold VagYM4_41060 IPR011129 Cold shock domain VagYM4_41070 IPR040476 RNase II/RNase R, cold shock domain VagYM4_41070 IPR011129 Cold shock domain VagYM4_41070 IPR004476 Ribonuclease II/ribonuclease R VagYM4_41070 IPR003029 S1 domain VagYM4_41070 IPR012340 Nucleic acid-binding, OB-fold VagYM4_41070 IPR022967 RNA-binding domain, S1 VagYM4_41070 IPR013668 Ribonuclease R winged-helix domain VagYM4_41070 IPR013223 Ribonuclease B, N-terminal OB domain VagYM4_41070 IPR001900 Ribonuclease II/R VagYM4_41070 IPR022966 Ribonuclease II/R, conserved site VagYM4_41070 IPR011805 Ribonuclease R VagYM4_41080 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme VagYM4_41080 IPR001926 Pyridoxal-phosphate dependent enzyme VagYM4_41080 IPR006653 Tryptophan synthase, beta chain, conserved site VagYM4_41080 IPR023026 Tryptophan synthase beta chain/beta chain-like VagYM4_41080 IPR006654 Tryptophan synthase, beta chain VagYM4_41100 IPR036361 SAP domain superfamily VagYM4_41100 IPR018668 DNA-binding protein VF530-like VagYM4_41110 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_41110 IPR001650 Helicase, C-terminal VagYM4_41110 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_41110 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_41110 IPR028622 ATP-dependent RNA helicase RhlE VagYM4_41110 IPR011545 DEAD/DEAH box helicase domain VagYM4_41110 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_41130 IPR002781 Transmembrane protein TauE-like VagYM4_41150 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_41150 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_41150 IPR005119 LysR, substrate-binding VagYM4_41150 IPR000847 Transcription regulator HTH, LysR VagYM4_41160 IPR000620 EamA domain VagYM4_41170 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_41170 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily VagYM4_41170 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal VagYM4_41170 IPR000310 Orn/Lys/Arg decarboxylase, major domain VagYM4_41170 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_41170 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_41180 IPR036380 Isochorismatase-like superfamily VagYM4_41180 IPR000868 Isochorismatase-like VagYM4_41200 IPR034193 Proteinase K-like catalytic domain VagYM4_41200 IPR007280 Peptidase, C-terminal, archaeal/bacterial VagYM4_41200 IPR000209 Peptidase S8/S53 domain VagYM4_41200 IPR036852 Peptidase S8/S53 domain superfamily VagYM4_41200 IPR023827 Peptidase S8, subtilisin, Asp-active site VagYM4_41200 IPR022398 Peptidase S8, subtilisin, His-active site VagYM4_41200 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily VagYM4_41200 IPR015500 Peptidase S8, subtilisin-related VagYM4_41200 IPR023828 Peptidase S8, subtilisin, Ser-active site VagYM4_41200 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 VagYM4_41230 IPR024530 Putative quorum-sensing-regulated virulence factor VagYM4_41270 IPR001533 Pterin 4 alpha carbinolamine dehydratase VagYM4_41270 IPR036428 Pterin 4 alpha carbinolamine dehydratase superfamily VagYM4_41280 IPR005960 Phenylalanine-4-hydroxylase, monomeric form VagYM4_41280 IPR019774 Aromatic amino acid hydroxylase, C-terminal VagYM4_41280 IPR036951 Aromatic amino acid hydroxylase superfamily VagYM4_41280 IPR001273 Aromatic amino acid hydroxylase VagYM4_41280 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site VagYM4_41280 IPR036329 Aromatic amino acid monoxygenase, C-terminal domain superfamily VagYM4_41290 IPR020845 AMP-binding, conserved site VagYM4_41290 IPR005914 Acetoacetyl-CoA synthase VagYM4_41290 IPR000873 AMP-dependent synthetase/ligase VagYM4_41290 IPR042099 AMP-dependent synthetase-like superfamily VagYM4_41290 IPR025110 AMP-binding enzyme, C-terminal domain VagYM4_41300 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_41300 IPR010233 Ubiquinone biosynthesis O-methyltransferase VagYM4_41310 IPR000847 Transcription regulator HTH, LysR VagYM4_41310 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_41310 IPR005119 LysR, substrate-binding VagYM4_41310 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_41330 IPR000620 EamA domain VagYM4_41350 IPR029062 Class I glutamine amidotransferase-like VagYM4_41350 IPR026041 Glyoxalase ElbB VagYM4_41360 IPR039697 Iron-type alcohol dehydrogenase-like VagYM4_41360 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA VagYM4_41360 IPR018211 Alcohol dehydrogenase, iron-type, conserved site VagYM4_41370 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase VagYM4_41370 IPR012938 Glucose/Sorbosone dehydrogenase VagYM4_41370 IPR011042 Six-bladed beta-propeller, TolB-like VagYM4_41390 IPR002177 DNA-binding protein Dps VagYM4_41390 IPR008331 Ferritin/DPS protein domain VagYM4_41390 IPR023188 DNA-binding protein Dps, conserved site VagYM4_41390 IPR009078 Ferritin-like superfamily VagYM4_41390 IPR012347 Ferritin-like VagYM4_41400 IPR033480 Single Cache domain 2 VagYM4_41400 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_41400 IPR003660 HAMP domain VagYM4_41400 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_41420 IPR003593 AAA+ ATPase domain VagYM4_41420 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_41420 IPR003838 ABC transporter permease protein domain VagYM4_41420 IPR003439 ABC transporter-like VagYM4_41420 IPR017871 ABC transporter, conserved site VagYM4_41420 IPR025857 MacB-like periplasmic core domain VagYM4_41420 IPR017911 ABC transporter, macrolide export, ATP-binding domain VagYM4_41430 IPR003593 AAA+ ATPase domain VagYM4_41430 IPR003838 ABC transporter permease protein domain VagYM4_41430 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_41430 IPR025857 MacB-like periplasmic core domain VagYM4_41430 IPR017911 ABC transporter, macrolide export, ATP-binding domain VagYM4_41430 IPR017871 ABC transporter, conserved site VagYM4_41430 IPR003439 ABC transporter-like VagYM4_41460 IPR000160 GGDEF domain VagYM4_41460 IPR029787 Nucleotide cyclase VagYM4_41470 IPR005589 Alternative ribosome-rescue factor A VagYM4_41480 IPR011129 Cold shock domain VagYM4_41480 IPR012156 Cold shock, CspA VagYM4_41480 IPR012340 Nucleic acid-binding, OB-fold VagYM4_41480 IPR002059 Cold-shock protein, DNA-binding VagYM4_41480 IPR019844 Cold-shock (CSD) domain VagYM4_41520 IPR039567 Glycine zipper domain VagYM4_41520 IPR006690 Outer membrane protein, OmpA-like, conserved site VagYM4_41520 IPR006665 OmpA-like domain VagYM4_41520 IPR006664 Outer membrane protein, bacterial VagYM4_41520 IPR036737 OmpA-like domain superfamily VagYM4_41540 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal VagYM4_41540 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily VagYM4_41540 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain VagYM4_41550 IPR030470 UbiA prenyltransferase conserved site VagYM4_41550 IPR000537 UbiA prenyltransferase family VagYM4_41550 IPR006369 Protohaem IX farnesyltransferase VagYM4_41560 IPR003780 COX15/CtaA family VagYM4_41560 IPR023754 Heme A synthase, type 2 VagYM4_41590 IPR024791 Cytochrome c oxidase subunit III VagYM4_41590 IPR033945 Cytochrome c oxidase subunit III domain VagYM4_41590 IPR000298 Cytochrome c oxidase subunit III-like VagYM4_41590 IPR035973 Cytochrome c oxidase subunit III-like superfamily VagYM4_41590 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle VagYM4_41600 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain superfamily VagYM4_41600 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 VagYM4_41610 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site VagYM4_41610 IPR000883 Cytochrome c oxidase subunit I VagYM4_41610 IPR036927 Cytochrome c oxidase-like, subunit I superfamily VagYM4_41610 IPR023616 Cytochrome c oxidase-like, subunit I domain VagYM4_41610 IPR033944 Cytochrome c oxidase subunit I domain VagYM4_41610 IPR014241 Cytochrome c oxidase, subunit I bacterial type VagYM4_41620 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain VagYM4_41620 IPR014222 Cytochrome c oxidase, subunit II VagYM4_41620 IPR008972 Cupredoxin VagYM4_41620 IPR001505 Copper centre Cu(A) VagYM4_41620 IPR034210 Cytochrome c oxidase subunit 2, C-terminal VagYM4_41620 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily VagYM4_41620 IPR002429 Cytochrome c oxidase subunit II-like C-terminal VagYM4_41630 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily VagYM4_41630 IPR005843 Alpha-D-phosphohexomutase, C-terminal VagYM4_41630 IPR005841 Alpha-D-phosphohexomutase superfamily VagYM4_41630 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II VagYM4_41630 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III VagYM4_41630 IPR016066 Alpha-D-phosphohexomutase, conserved site VagYM4_41630 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I VagYM4_41630 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III VagYM4_41650 IPR001123 Amino acid exporter protein, LeuE-type VagYM4_41650 IPR004778 Homoserine/Threonine efflux protein VagYM4_41660 IPR018060 DNA binding HTH domain, AraC-type VagYM4_41660 IPR009057 Homeobox-like domain superfamily VagYM4_41660 IPR020449 Transcription regulator HTH, AraC- type VagYM4_41690 IPR011234 Fumarylacetoacetase-like, C-terminal VagYM4_41690 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily VagYM4_41730 IPR000620 EamA domain VagYM4_41740 IPR036249 Thioredoxin-like superfamily VagYM4_41740 IPR011900 Glutaredoxin, GrxC VagYM4_41740 IPR014025 Glutaredoxin subgroup VagYM4_41740 IPR002109 Glutaredoxin VagYM4_41740 IPR011767 Glutaredoxin active site VagYM4_41770 IPR020846 Major facilitator superfamily domain VagYM4_41770 IPR036259 MFS transporter superfamily VagYM4_41770 IPR004734 Multidrug resistance protein VagYM4_41770 IPR011701 Major facilitator superfamily VagYM4_41780 IPR000847 Transcription regulator HTH, LysR VagYM4_41780 IPR005119 LysR, substrate-binding VagYM4_41780 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_41780 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_41790 IPR001633 EAL domain VagYM4_41790 IPR013655 PAS fold-3 VagYM4_41790 IPR013656 PAS fold-4 VagYM4_41790 IPR000700 PAS-associated, C-terminal VagYM4_41790 IPR035965 PAS domain superfamily VagYM4_41790 IPR035919 EAL domain superfamily VagYM4_41790 IPR000014 PAS domain VagYM4_41790 IPR001610 PAC motif VagYM4_41790 IPR029787 Nucleotide cyclase VagYM4_41790 IPR000160 GGDEF domain VagYM4_41800 IPR011055 Duplicated hybrid motif VagYM4_41800 IPR013731 Opacity-associated protein A, N-terminal VagYM4_41800 IPR016047 Peptidase M23 VagYM4_41800 IPR018392 LysM domain VagYM4_41860 IPR003660 HAMP domain VagYM4_41860 IPR033479 Double Cache domain 1 VagYM4_41860 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_41860 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_41880 IPR018227 Amino acid/polyamine transporter 2 VagYM4_41880 IPR013059 Tryptophan/tyrosine transporter VagYM4_41910 IPR023710 Probable phosphatase YcdX VagYM4_41910 IPR003141 Polymerase/histidinol phosphatase, N-terminal VagYM4_41910 IPR016195 Polymerase/histidinol phosphatase-like VagYM4_41920 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_41940 IPR013149 Alcohol dehydrogenase, C-terminal VagYM4_41940 IPR013154 Alcohol dehydrogenase, N-terminal VagYM4_41940 IPR036291 NAD(P)-binding domain superfamily VagYM4_41940 IPR011032 GroES-like superfamily VagYM4_41950 IPR013011 Phosphotransferase system, EIIB component, type 2 VagYM4_41950 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC VagYM4_41950 IPR013014 Phosphotransferase system, EIIC component, type 2 VagYM4_41950 IPR003352 Phosphotransferase system, EIIC VagYM4_41950 IPR029503 Phosphotransferase system EIIB component, mannitol-specific VagYM4_41950 IPR003501 Phosphotransferase system, EIIB component, type 2/3 VagYM4_41950 IPR036095 PTS system IIB component-like superfamily VagYM4_41960 IPR002178 PTS EIIA type-2 domain VagYM4_41960 IPR016152 Phosphotransferase/anion transporter VagYM4_41990 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 VagYM4_41990 IPR004706 Arsenical-resistance protein Acr3 VagYM4_41990 IPR038770 Sodium/solute symporter superfamily VagYM4_42010 IPR036610 PEBP-like superfamily VagYM4_42010 IPR005247 YbhB/YbcL VagYM4_42010 IPR008914 Phosphatidylethanolamine-binding protein VagYM4_42020 IPR003719 Phenazine biosynthesis PhzF protein VagYM4_42030 IPR015943 WD40/YVTN repeat-like-containing domain superfamily VagYM4_42030 IPR019405 Lactonase, 7-bladed beta propeller VagYM4_42030 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily VagYM4_42050 IPR003593 AAA+ ATPase domain VagYM4_42050 IPR003439 ABC transporter-like VagYM4_42050 IPR017871 ABC transporter, conserved site VagYM4_42050 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_42060 IPR000412 ABC-2 transporter VagYM4_42090 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_42090 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_42090 IPR009010 Aspartate decarboxylase-like domain superfamily VagYM4_42090 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_42090 IPR006657 Molybdopterin dinucleotide-binding domain VagYM4_42090 IPR006478 Formate dehydrogenase, alpha subunit VagYM4_42090 IPR006656 Molybdopterin oxidoreductase VagYM4_42090 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain VagYM4_42090 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding VagYM4_42090 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_42090 IPR041924 Formate dehydrogenase H, N-terminal VagYM4_42130 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA VagYM4_42130 IPR001036 Acriflavin resistance protein VagYM4_42130 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_42160 IPR000871 Beta-lactamase, class-A VagYM4_42160 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_42160 IPR023650 Beta-lactamase, class-A active site VagYM4_42170 IPR000160 GGDEF domain VagYM4_42170 IPR033416 Periplasmic sensor domain CHASE7 VagYM4_42170 IPR029787 Nucleotide cyclase VagYM4_42190 IPR000182 GNAT domain VagYM4_42190 IPR016181 Acyl-CoA N-acyltransferase VagYM4_42210 IPR042117 OMPP1/FadL/TodX superfamily VagYM4_42210 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_42220 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains VagYM4_42220 IPR001036 Acriflavin resistance protein VagYM4_42220 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 VagYM4_42230 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VagYM4_42230 IPR022824 Multidrug resistance protein MdtA VagYM4_42230 IPR006143 RND efflux pump, membrane fusion protein VagYM4_42260 IPR029058 Alpha/Beta hydrolase fold VagYM4_42260 IPR002471 Peptidase S9, serine active site VagYM4_42260 IPR023302 Peptidase S9A, N-terminal domain VagYM4_42260 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain VagYM4_42260 IPR002470 Peptidase S9A, prolyl oligopeptidase VagYM4_42270 IPR032781 ABC-transporter extension domain VagYM4_42270 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily VagYM4_42270 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_42270 IPR017871 ABC transporter, conserved site VagYM4_42270 IPR003439 ABC transporter-like VagYM4_42270 IPR032524 ABC transporter Uup, C-terminal VagYM4_42270 IPR003593 AAA+ ATPase domain VagYM4_42280 IPR006015 Universal stress protein A family VagYM4_42280 IPR006016 UspA VagYM4_42280 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_42290 IPR029039 Flavoprotein-like superfamily VagYM4_42290 IPR003680 Flavodoxin-like fold VagYM4_42300 IPR004771 K+/H+ exchanger VagYM4_42300 IPR006036 Potassium uptake protein TrkA VagYM4_42300 IPR023941 Glutathione-regulated potassium-efflux system protein KefC VagYM4_42300 IPR006153 Cation/H+ exchanger VagYM4_42300 IPR036291 NAD(P)-binding domain superfamily VagYM4_42300 IPR003148 Regulator of K+ conductance, N-terminal VagYM4_42300 IPR038770 Sodium/solute symporter superfamily VagYM4_42330 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_42330 IPR017853 Glycoside hydrolase superfamily VagYM4_42330 IPR006046 Alpha amylase VagYM4_42340 IPR009061 Putative DNA-binding domain superfamily VagYM4_42340 IPR000551 MerR-type HTH domain VagYM4_42350 IPR003779 Carboxymuconolactone decarboxylase-like VagYM4_42350 IPR029032 AhpD-like VagYM4_42370 IPR007280 Peptidase, C-terminal, archaeal/bacterial VagYM4_42370 IPR013661 Peptidase M9, collagenase, N-terminal domain VagYM4_42370 IPR002169 Peptidase M9A/M9B, collagenase, bacterial VagYM4_42390 IPR041010 Acetyl-coA carboxylase zinc finger domain VagYM4_42390 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal VagYM4_42390 IPR029045 ClpP/crotonase-like domain superfamily VagYM4_42390 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit VagYM4_42390 IPR034733 Acetyl-CoA carboxylase VagYM4_42400 IPR000847 Transcription regulator HTH, LysR VagYM4_42400 IPR005119 LysR, substrate-binding VagYM4_42400 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_42400 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_42410 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_42410 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_42410 IPR003660 HAMP domain VagYM4_42410 IPR000727 Target SNARE coiled-coil homology domain VagYM4_42410 IPR033479 Double Cache domain 1 VagYM4_42410 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_42430 IPR011541 Nickel/cobalt transporter, high-affinity VagYM4_42440 IPR038390 Metal-sensitive transcriptional repressor superfamily VagYM4_42440 IPR003735 Metal-sensitive transcriptional repressor VagYM4_42470 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site VagYM4_42470 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type VagYM4_42480 IPR001789 Signal transduction response regulator, receiver domain VagYM4_42480 IPR024181 Chemotaxis response regulator CheV VagYM4_42480 IPR036061 CheW-like domain superfamily VagYM4_42480 IPR011006 CheY-like superfamily VagYM4_42480 IPR002545 CheW-like domain VagYM4_42500 IPR014419 Heme utilization protein HutZ VagYM4_42500 IPR012349 FMN-binding split barrel VagYM4_42500 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative VagYM4_42510 IPR010413 Intracellular heme transport protein HutX-like VagYM4_42520 IPR007197 Radical SAM VagYM4_42520 IPR034505 Anaerobic coproporphyrinogen-III oxidase VagYM4_42520 IPR023404 Radical SAM, alpha/beta horseshoe VagYM4_42520 IPR026332 Anaerobilin synthase HutW VagYM4_42520 IPR006638 Elp3/MiaB/NifB VagYM4_42530 IPR003538 Gram-negative bacterial TonB protein VagYM4_42530 IPR006260 TonB/TolA, C-terminal VagYM4_42530 IPR037682 TonB, C-terminal VagYM4_42540 IPR002898 MotA/TolQ/ExbB proton channel VagYM4_42550 IPR003400 Biopolymer transport protein ExbD/TolR VagYM4_42570 IPR037294 ABC transporter, BtuC-like VagYM4_42570 IPR000522 ABC transporter, permease protein, BtuC-like VagYM4_42580 IPR003439 ABC transporter-like VagYM4_42580 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_42580 IPR015863 ABC transporter, hemin import, HmuV VagYM4_42580 IPR003593 AAA+ ATPase domain VagYM4_42670 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_42670 IPR004821 Cytidyltransferase-like domain VagYM4_42670 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase VagYM4_42680 IPR022926 NH(3)-dependent NAD(+) synthetase VagYM4_42680 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_42680 IPR003694 NAD(+) synthetase VagYM4_42680 IPR022310 NAD/GMP synthase VagYM4_42690 IPR011037 Pyruvate kinase-like, insert domain superfamily VagYM4_42690 IPR005302 Molybdenum cofactor sulfurase, C-terminal VagYM4_42690 IPR012675 Beta-grasp domain superfamily VagYM4_42690 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site VagYM4_42690 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_42690 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_42690 IPR012675 Beta-grasp domain superfamily VagYM4_42690 IPR036010 2Fe-2S ferredoxin-like superfamily VagYM4_42690 IPR005303 MOSC, N-terminal beta barrel VagYM4_42690 IPR011037 Pyruvate kinase-like, insert domain superfamily VagYM4_42690 IPR005303 MOSC, N-terminal beta barrel VagYM4_42690 IPR005302 Molybdenum cofactor sulfurase, C-terminal VagYM4_42690 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain VagYM4_42690 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site VagYM4_42700 IPR000612 Proteolipid membrane potential modulator VagYM4_42710 IPR004721 Dihydroorotase homodimeric type VagYM4_42710 IPR002195 Dihydroorotase, conserved site VagYM4_42710 IPR032466 Metal-dependent hydrolase VagYM4_42710 IPR006680 Amidohydrolase-related VagYM4_42720 IPR008526 Inner membrane protein YedI VagYM4_42780 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_42780 IPR035906 MetI-like superfamily VagYM4_42790 IPR035277 MalF, N-terminal VagYM4_42790 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like VagYM4_42790 IPR029345 Maltose transport system permease protein MalF, P2 domain VagYM4_42790 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_42790 IPR035906 MetI-like superfamily VagYM4_42800 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein VagYM4_42800 IPR006059 Bacterial extracellular solute-binding protein VagYM4_42800 IPR006061 Solute-binding family 1, conserved site VagYM4_42810 IPR013611 Transport-associated OB, type 2 VagYM4_42810 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_42810 IPR008995 Molybdate/tungstate binding, C-terminal VagYM4_42810 IPR015855 ABC transporter, maltose/maltodextrin import, MalK VagYM4_42810 IPR017871 ABC transporter, conserved site VagYM4_42810 IPR003439 ABC transporter-like VagYM4_42810 IPR003593 AAA+ ATPase domain VagYM4_42820 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase VagYM4_42820 IPR003362 Bacterial sugar transferase VagYM4_42820 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ VagYM4_42850 IPR025669 AAA domain VagYM4_42850 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_42850 IPR005702 Exopolysaccharide synthesis protein VagYM4_42850 IPR003856 Polysaccharide chain length determinant N-terminal domain VagYM4_42850 IPR032807 Tyrosine kinase, G-rich domain VagYM4_42870 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain VagYM4_42870 IPR001296 Glycosyl transferase, family 1 VagYM4_42940 IPR001647 DNA-binding HTH domain, TetR-type VagYM4_42940 IPR009057 Homeobox-like domain superfamily VagYM4_42940 IPR011075 Tetracyclin repressor-like, C-terminal domain VagYM4_42940 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily VagYM4_42950 IPR041694 Oxidoreductase, N-terminal domain VagYM4_42950 IPR011032 GroES-like superfamily VagYM4_42950 IPR020843 Polyketide synthase, enoylreductase domain VagYM4_42950 IPR013149 Alcohol dehydrogenase, C-terminal VagYM4_42950 IPR036291 NAD(P)-binding domain superfamily VagYM4_42960 IPR036282 Glutathione S-transferase, C-terminal domain superfamily VagYM4_42960 IPR010987 Glutathione S-transferase, C-terminal-like VagYM4_42960 IPR040079 Glutathione Transferase family VagYM4_42960 IPR004045 Glutathione S-transferase, N-terminal VagYM4_42960 IPR034330 Glutathione S-transferases, class Zeta , C-terminal VagYM4_42960 IPR034333 Glutathione S-transferases, class Zeta , N-terminal VagYM4_42960 IPR036249 Thioredoxin-like superfamily VagYM4_42960 IPR005955 Glutathione S-transferases, class Zeta VagYM4_42970 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 VagYM4_42970 IPR040333 Catalase, clade 3 VagYM4_42970 IPR018028 Catalase, mono-functional, haem-containing VagYM4_42970 IPR024708 Catalase active site VagYM4_42970 IPR010582 Catalase immune-responsive domain VagYM4_42970 IPR037060 Catalase core domain superfamily VagYM4_42970 IPR002226 Catalase haem-binding site VagYM4_42970 IPR020835 Catalase superfamily VagYM4_42970 IPR011614 Catalase core domain VagYM4_42980 IPR013328 6-phosphogluconate dehydrogenase, domain 2 VagYM4_42980 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily VagYM4_42980 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site VagYM4_42980 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain VagYM4_42980 IPR036291 NAD(P)-binding domain superfamily VagYM4_42980 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding VagYM4_42980 IPR015815 3-hydroxyisobutyrate dehydrogenase-related VagYM4_42990 IPR013014 Phosphotransferase system, EIIC component, type 2 VagYM4_42990 IPR006327 Phosphotransferase system, fructose IIC component VagYM4_43000 IPR003353 Phosphotransferase system, fructose-specific IIB subunit VagYM4_43000 IPR003501 Phosphotransferase system, EIIB component, type 2/3 VagYM4_43000 IPR013011 Phosphotransferase system, EIIB component, type 2 VagYM4_43000 IPR036095 PTS system IIB component-like superfamily VagYM4_43020 IPR018062 HTH domain AraC-type, conserved site VagYM4_43020 IPR009057 Homeobox-like domain superfamily VagYM4_43020 IPR018060 DNA binding HTH domain, AraC-type VagYM4_43020 IPR020449 Transcription regulator HTH, AraC- type VagYM4_43030 IPR013011 Phosphotransferase system, EIIB component, type 2 VagYM4_43030 IPR036095 PTS system IIB component-like superfamily VagYM4_43030 IPR003353 Phosphotransferase system, fructose-specific IIB subunit VagYM4_43030 IPR006327 Phosphotransferase system, fructose IIC component VagYM4_43030 IPR002178 PTS EIIA type-2 domain VagYM4_43030 IPR016152 Phosphotransferase/anion transporter VagYM4_43030 IPR003501 Phosphotransferase system, EIIB component, type 2/3 VagYM4_43030 IPR013014 Phosphotransferase system, EIIC component, type 2 VagYM4_43030 IPR004715 Phosphotransferase system, IIA component fructose subfamily VagYM4_43040 IPR014710 RmlC-like jelly roll fold VagYM4_43040 IPR001250 Mannose-6-phosphate isomerase, type I VagYM4_43040 IPR018050 Phosphomannose isomerase, type I, conserved site VagYM4_43040 IPR011051 RmlC-like cupin domain superfamily VagYM4_43040 IPR016305 Mannose-6-phosphate isomerase VagYM4_43060 IPR006439 HAD hydrolase, subfamily IA VagYM4_43060 IPR023214 HAD superfamily VagYM4_43060 IPR036412 HAD-like superfamily VagYM4_43060 IPR023198 Phosphoglycolate phosphatase-like, domain 2 VagYM4_43060 IPR041492 Haloacid dehalogenase-like hydrolase VagYM4_43070 IPR014068 Azurin VagYM4_43070 IPR000923 Blue (type 1) copper domain VagYM4_43070 IPR028871 Blue (type 1) copper protein, binding site VagYM4_43070 IPR008972 Cupredoxin VagYM4_43080 IPR003352 Phosphotransferase system, EIIC VagYM4_43080 IPR004796 Phosphotransferase system, cellobiose-type IIC component VagYM4_43080 IPR004501 Phosphotransferase system, EIIC component, type 3 VagYM4_43100 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_43100 IPR006076 FAD dependent oxidoreductase VagYM4_43110 IPR041364 Rubredoxin binding domain VagYM4_43110 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_43110 IPR023753 FAD/NAD(P)-binding domain VagYM4_43120 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_43120 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_43120 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_43120 IPR015590 Aldehyde dehydrogenase domain VagYM4_43120 IPR011264 Betaine aldehyde dehydrogenase VagYM4_43120 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_43120 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_43130 IPR039004 Carnitine monooxygenase oxygenase subunit VagYM4_43130 IPR017941 Rieske [2Fe-2S] iron-sulphur domain VagYM4_43130 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily VagYM4_43130 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site VagYM4_43130 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit VagYM4_43130 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain VagYM4_43140 IPR000060 BCCT transporter family VagYM4_43140 IPR018093 BCCT transporter, conserved site VagYM4_43150 IPR005119 LysR, substrate-binding VagYM4_43150 IPR000847 Transcription regulator HTH, LysR VagYM4_43150 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_43150 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_43160 IPR004772 TrkH potassium transport family VagYM4_43160 IPR003445 Cation transporter VagYM4_43170 IPR003148 Regulator of K+ conductance, N-terminal VagYM4_43170 IPR006037 Regulator of K+ conductance, C-terminal VagYM4_43170 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily VagYM4_43170 IPR036291 NAD(P)-binding domain superfamily VagYM4_43180 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_43180 IPR001789 Signal transduction response regulator, receiver domain VagYM4_43180 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_43180 IPR011006 CheY-like superfamily VagYM4_43180 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_43190 IPR029016 GAF-like domain superfamily VagYM4_43190 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_43190 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal VagYM4_43190 IPR005467 Histidine kinase domain VagYM4_43190 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_43190 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_43190 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_43190 IPR038318 KdpD, transmembrane domain superfamily VagYM4_43190 IPR025201 Sensor protein KdpD, transmembrane domain VagYM4_43190 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_43190 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_43190 IPR025201 Sensor protein KdpD, transmembrane domain VagYM4_43190 IPR029016 GAF-like domain superfamily VagYM4_43190 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_43190 IPR038318 KdpD, transmembrane domain superfamily VagYM4_43190 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_43190 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_43190 IPR005467 Histidine kinase domain VagYM4_43190 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_43190 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal VagYM4_43200 IPR003593 AAA+ ATPase domain VagYM4_43200 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_43200 IPR003439 ABC transporter-like VagYM4_43200 IPR017871 ABC transporter, conserved site VagYM4_43200 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_43200 IPR039421 Type I protein exporter VagYM4_43200 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_43210 IPR012910 TonB-dependent receptor, plug domain VagYM4_43210 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_43210 IPR010105 TonB-dependent siderophore receptor VagYM4_43210 IPR010917 TonB-dependent receptor, conserved site VagYM4_43210 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_43210 IPR039423 TonB-dependent receptor-like VagYM4_43210 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_43220 IPR003593 AAA+ ATPase domain VagYM4_43220 IPR017871 ABC transporter, conserved site VagYM4_43220 IPR003439 ABC transporter-like VagYM4_43220 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_43230 IPR002491 ABC transporter periplasmic binding domain VagYM4_43240 IPR037294 ABC transporter, BtuC-like VagYM4_43240 IPR000522 ABC transporter, permease protein, BtuC-like VagYM4_43260 IPR010129 Type I secretion membrane fusion protein, HlyD family VagYM4_43260 IPR006144 Secretion protein HlyD, conserved site VagYM4_43270 IPR010128 ATPase, type I secretion system, PrtD VagYM4_43270 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_43270 IPR003439 ABC transporter-like VagYM4_43270 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_43270 IPR017871 ABC transporter, conserved site VagYM4_43270 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_43270 IPR003593 AAA+ ATPase domain VagYM4_43290 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_43290 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_43290 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_43300 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_43300 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_43300 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_43320 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_43320 IPR003660 HAMP domain VagYM4_43320 IPR033479 Double Cache domain 1 VagYM4_43330 IPR011703 ATPase, AAA-3 VagYM4_43330 IPR041628 ChlI/MoxR, AAA lid domain VagYM4_43330 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_43340 IPR002881 Domain of unknown function DUF58 VagYM4_43340 IPR036465 von Willebrand factor A-like domain superfamily VagYM4_43360 IPR036465 von Willebrand factor A-like domain superfamily VagYM4_43360 IPR002035 von Willebrand factor, type A VagYM4_43360 IPR022933 Uncharacterised protein family UPF0353 VagYM4_43370 IPR036465 von Willebrand factor A-like domain superfamily VagYM4_43370 IPR002035 von Willebrand factor, type A VagYM4_43370 IPR022933 Uncharacterised protein family UPF0353 VagYM4_43400 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_43400 IPR017871 ABC transporter, conserved site VagYM4_43400 IPR015850 ABC transporter, phosphate import, PstB VagYM4_43400 IPR003593 AAA+ ATPase domain VagYM4_43400 IPR005670 Phosphate transport system permease protein 1 VagYM4_43400 IPR003439 ABC transporter-like VagYM4_43410 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_43410 IPR035906 MetI-like superfamily VagYM4_43410 IPR005672 Phosphate transport system permease protein PstA VagYM4_43420 IPR035906 MetI-like superfamily VagYM4_43420 IPR011864 Phosphate ABC transporter, permease protein PstC VagYM4_43420 IPR000515 ABC transporter type 1, transmembrane domain MetI-like VagYM4_43430 IPR024370 PBP domain VagYM4_43440 IPR000727 Target SNARE coiled-coil homology domain VagYM4_43440 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_43440 IPR003660 HAMP domain VagYM4_43440 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_43440 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain VagYM4_43480 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_43480 IPR010917 TonB-dependent receptor, conserved site VagYM4_43480 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_43480 IPR039426 Vitamin B12 transporter BtuB-like VagYM4_43480 IPR010916 TonB box, conserved site VagYM4_43480 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_43480 IPR012910 TonB-dependent receptor, plug domain VagYM4_43490 IPR029058 Alpha/Beta hydrolase fold VagYM4_43490 IPR023302 Peptidase S9A, N-terminal domain VagYM4_43490 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain VagYM4_43490 IPR002470 Peptidase S9A, prolyl oligopeptidase VagYM4_43490 IPR002471 Peptidase S9, serine active site VagYM4_43500 IPR014014 RNA helicase, DEAD-box type, Q motif VagYM4_43500 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site VagYM4_43500 IPR011545 DEAD/DEAH box helicase domain VagYM4_43500 IPR028621 ATP-dependent RNA helicase SrmB VagYM4_43500 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_43500 IPR001650 Helicase, C-terminal VagYM4_43500 IPR014001 Helicase superfamily 1/2, ATP-binding domain VagYM4_43520 IPR038063 L,D-transpeptidase catalytic domain-like VagYM4_43520 IPR018392 LysM domain VagYM4_43520 IPR041597 L,D-transpeptidase C-terminal domain VagYM4_43520 IPR005490 L,D-transpeptidase catalytic domain VagYM4_43530 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily VagYM4_43530 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily VagYM4_43530 IPR002081 Cryptochrome/DNA photolyase class 1 VagYM4_43530 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal VagYM4_43530 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_43530 IPR006050 DNA photolyase, N-terminal VagYM4_43530 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain VagYM4_43540 IPR000551 MerR-type HTH domain VagYM4_43540 IPR009061 Putative DNA-binding domain superfamily VagYM4_43550 IPR013560 Domain of unknown function DUF1722 VagYM4_43560 IPR000845 Nucleoside phosphorylase domain VagYM4_43560 IPR035994 Nucleoside phosphorylase superfamily VagYM4_43560 IPR004402 Purine nucleoside phosphorylase DeoD-type VagYM4_43590 IPR000160 GGDEF domain VagYM4_43590 IPR029787 Nucleotide cyclase VagYM4_43600 IPR011223 Uncharacterised conserved protein UCP028770 VagYM4_43610 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain VagYM4_43620 IPR022914 Protein of unknown function UPF0397 VagYM4_43620 IPR009825 ECF transporter, substrate-specific component-like VagYM4_43630 IPR017871 ABC transporter, conserved site VagYM4_43630 IPR003439 ABC transporter-like VagYM4_43630 IPR022216 Putative ABC cobalt transporter VagYM4_43630 IPR003593 AAA+ ATPase domain VagYM4_43630 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_43670 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_43670 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_43670 IPR011886 Ferredoxin-type protein, NapH/MauN family VagYM4_43680 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal VagYM4_43680 IPR004494 MauM/NapG ferredoxin-type protein VagYM4_43680 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain VagYM4_43680 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site VagYM4_43690 IPR016181 Acyl-CoA N-acyltransferase VagYM4_43690 IPR000182 GNAT domain VagYM4_43720 IPR012349 FMN-binding split barrel VagYM4_43720 IPR009875 PilZ domain VagYM4_43720 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal VagYM4_43730 IPR023614 Porin domain superfamily VagYM4_43730 IPR033900 Porin domain, Gram-negative type VagYM4_43740 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_43740 IPR033480 Single Cache domain 2 VagYM4_43740 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_43740 IPR003660 HAMP domain VagYM4_43750 IPR041699 Lon protease, AAA domain VagYM4_43750 IPR020568 Ribosomal protein S5 domain 2-type fold VagYM4_43750 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup VagYM4_43750 IPR027065 Lon protease VagYM4_43750 IPR008269 Peptidase S16, Lon proteolytic domain VagYM4_43770 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal VagYM4_43770 IPR017871 ABC transporter, conserved site VagYM4_43770 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_43770 IPR003593 AAA+ ATPase domain VagYM4_43770 IPR003439 ABC transporter-like VagYM4_43780 IPR029058 Alpha/Beta hydrolase fold VagYM4_43780 IPR002470 Peptidase S9A, prolyl oligopeptidase VagYM4_43780 IPR002471 Peptidase S9, serine active site VagYM4_43780 IPR023302 Peptidase S9A, N-terminal domain VagYM4_43780 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain VagYM4_43790 IPR005119 LysR, substrate-binding VagYM4_43790 IPR000847 Transcription regulator HTH, LysR VagYM4_43790 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_43790 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_43800 IPR003804 L-lactate permease VagYM4_43810 IPR000262 FMN-dependent dehydrogenase VagYM4_43810 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site VagYM4_43810 IPR037396 FMN hydroxy acid dehydrogenase domain VagYM4_43810 IPR013785 Aldolase-type TIM barrel VagYM4_43810 IPR020920 L-lactate dehydrogenase, bacterial VagYM4_43810 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent VagYM4_43830 IPR006685 Mechanosensitive ion channel MscS VagYM4_43830 IPR010920 LSM domain superfamily VagYM4_43830 IPR011066 Mechanosensitive ion channel MscS, C-terminal VagYM4_43830 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 VagYM4_43830 IPR023408 Mechanosensitive ion channel MscS domain superfamily VagYM4_43830 IPR006686 Mechanosensitive ion channel MscS, conserved site VagYM4_43840 IPR036398 Alpha carbonic anhydrase domain superfamily VagYM4_43840 IPR018338 Carbonic anhydrase, alpha-class, conserved site VagYM4_43840 IPR023561 Carbonic anhydrase, alpha-class VagYM4_43840 IPR041891 Carbonic anhydrase, prokaryotic-like VagYM4_43840 IPR001148 Alpha carbonic anhydrase domain VagYM4_43850 IPR011032 GroES-like superfamily VagYM4_43850 IPR013154 Alcohol dehydrogenase, N-terminal VagYM4_43850 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site VagYM4_43850 IPR004627 L-threonine 3-dehydrogenase VagYM4_43850 IPR036291 NAD(P)-binding domain superfamily VagYM4_43850 IPR020843 Polyketide synthase, enoylreductase domain VagYM4_43850 IPR013149 Alcohol dehydrogenase, C-terminal VagYM4_43860 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase VagYM4_43860 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site VagYM4_43860 IPR004839 Aminotransferase, class I/classII VagYM4_43860 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_43860 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_43860 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_43870 IPR000160 GGDEF domain VagYM4_43870 IPR001633 EAL domain VagYM4_43870 IPR000014 PAS domain VagYM4_43870 IPR029787 Nucleotide cyclase VagYM4_43870 IPR005330 MHYT domain VagYM4_43870 IPR035919 EAL domain superfamily VagYM4_43870 IPR035965 PAS domain superfamily VagYM4_43880 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF VagYM4_43880 IPR018313 Solute-binding protein family 3, conserved site VagYM4_43880 IPR001320 Ionotropic glutamate receptor VagYM4_43900 IPR018152 Superoxide dismutase, copper/zinc, binding site VagYM4_43900 IPR001424 Superoxide dismutase, copper/zinc binding domain VagYM4_43900 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily VagYM4_43900 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone VagYM4_43910 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_43910 IPR005467 Histidine kinase domain VagYM4_43910 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_43910 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_43910 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_43910 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_43910 IPR003660 HAMP domain VagYM4_43920 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_43920 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_43920 IPR001789 Signal transduction response regulator, receiver domain VagYM4_43920 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_43920 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_43920 IPR011006 CheY-like superfamily VagYM4_43960 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_43960 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_43960 IPR000847 Transcription regulator HTH, LysR VagYM4_43960 IPR005119 LysR, substrate-binding VagYM4_43970 IPR037478 YwkD-like domain VagYM4_43970 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase VagYM4_43970 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain VagYM4_43970 IPR037523 Vicinal oxygen chelate (VOC) domain VagYM4_44000 IPR023710 Probable phosphatase YcdX VagYM4_44000 IPR003141 Polymerase/histidinol phosphatase, N-terminal VagYM4_44000 IPR016195 Polymerase/histidinol phosphatase-like VagYM4_44030 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_44030 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_44030 IPR000847 Transcription regulator HTH, LysR VagYM4_44030 IPR005119 LysR, substrate-binding VagYM4_44060 IPR040627 T3SS EscN ATPase, C-terminal VagYM4_44060 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_44060 IPR005714 ATPase, type III secretion system, FliI/YscN VagYM4_44060 IPR032463 ATPase, type III secretion system, FliI VagYM4_44060 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain VagYM4_44060 IPR020005 Flagellar export ATPase FliI, clade 1 VagYM4_44060 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site VagYM4_44060 IPR003593 AAA+ ATPase domain VagYM4_44080 IPR011002 Flagellar motor switch protein FliG, alpha-helical VagYM4_44080 IPR028263 Flagellar motor switch protein FliG, N-terminal domain VagYM4_44080 IPR032779 Flagellar motor switch protein FliG, middle domain VagYM4_44080 IPR000090 Flagellar motor switch protein FliG VagYM4_44080 IPR023087 Flagellar motor switch protein FliG, C-terminal VagYM4_44090 IPR006182 Secretory protein YscJ/FliF VagYM4_44090 IPR000067 Flagellar M-ring protein FliF VagYM4_44090 IPR013556 Flagellar M-ring C-terminal VagYM4_44100 IPR001624 Flagellar hook-basal body complex protein FliE VagYM4_44110 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_44110 IPR029995 Transcriptional activator SfnR/FlbD VagYM4_44110 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_44110 IPR001789 Signal transduction response regulator, receiver domain VagYM4_44110 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_44110 IPR002197 DNA binding HTH domain, Fis-type VagYM4_44110 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_44110 IPR009057 Homeobox-like domain superfamily VagYM4_44110 IPR011006 CheY-like superfamily VagYM4_44110 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_44110 IPR003593 AAA+ ATPase domain VagYM4_44140 IPR001543 Surface presentation of antigen (SpoA) VagYM4_44140 IPR012826 Flagellar motor switch FliN VagYM4_44140 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb VagYM4_44140 IPR036429 SpoA-like superfamily VagYM4_44150 IPR005837 Flagellar transport protein FliP VagYM4_44150 IPR005838 Type III secretion system inner membrane P protein VagYM4_44160 IPR006305 Flagellar biosynthesis protein FliQ VagYM4_44160 IPR002191 Bacterial export protein family 3 VagYM4_44170 IPR006303 Flagellar biosynthesis protein FliR VagYM4_44170 IPR002010 Type III secretion system inner membrane R protein VagYM4_44180 IPR006136 Flagellar biosynthetic protein FlhB VagYM4_44180 IPR029025 Type III secretion system substrate exporter, C-terminal VagYM4_44180 IPR006135 Type III secretion system substrate exporter VagYM4_44190 IPR025505 FHIPEP conserved site VagYM4_44190 IPR042193 FHIPEP, domain 3 VagYM4_44190 IPR042196 FHIPEP, domain 4 VagYM4_44190 IPR006301 Flagellar biosynthesis protein FlhA VagYM4_44190 IPR001712 Type III secretion system FHIPEP VagYM4_44190 IPR042194 FHIPEP, domain 1 VagYM4_44210 IPR001492 Flagellin VagYM4_44210 IPR001029 Flagellin, D0/D1 domain VagYM4_44210 IPR042187 Flagellin, C-terminal domain, subdomain 2 VagYM4_44250 IPR003481 Flagellar hook-associated protein 2, N-terminal VagYM4_44250 IPR010809 Flagellar hook-associated protein 2, C-terminal VagYM4_44250 IPR040026 Flagellar hook-associated protein 2 VagYM4_44250 IPR010810 Flagellin hook, IN motif VagYM4_44260 IPR036584 Flagellar protein FliS superfamily VagYM4_44260 IPR003713 Flagellar protein FliS VagYM4_44290 IPR005503 Flagellar basal body-associated protein FliL VagYM4_44300 IPR014284 RNA polymerase sigma-70 like domain VagYM4_44300 IPR000943 RNA polymerase sigma-70 VagYM4_44300 IPR007630 RNA polymerase sigma-70 region 4 VagYM4_44300 IPR012845 RNA polymerase sigma factor, FliA/WhiG VagYM4_44300 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_44300 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_44300 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_44310 IPR002898 MotA/TolQ/ExbB proton channel VagYM4_44310 IPR000540 Flagellar motor protein MotA, conserved site VagYM4_44310 IPR022522 Flagellar motor stator, MotA VagYM4_44320 IPR025713 Motility protein B, N-terminal domain VagYM4_44320 IPR006665 OmpA-like domain VagYM4_44320 IPR036737 OmpA-like domain superfamily VagYM4_44350 IPR037063 Bacterial Pleckstrin homology domain superfamily VagYM4_44350 IPR012544 Bacterial Pleckstrin homology domain VagYM4_44420 IPR019777 Formate C-acetyltransferase glycine radical, conserved site VagYM4_44420 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family VagYM4_44420 IPR001150 Glycine radical domain VagYM4_44420 IPR004184 Pyruvate formate lyase domain VagYM4_44430 IPR007197 Radical SAM VagYM4_44430 IPR001989 Radical-activating enzyme, conserved site VagYM4_44430 IPR034465 Pyruvate formate-lyase activase VagYM4_44430 IPR012839 Organic radical enzyme activase VagYM4_44430 IPR034457 Organic radical-activating enzymes VagYM4_44430 IPR013785 Aldolase-type TIM barrel VagYM4_44440 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase VagYM4_44440 IPR001585 Transaldolase/Fructose-6-phosphate aldolase VagYM4_44440 IPR023001 Fructose-6-phosphate aldolase VagYM4_44440 IPR013785 Aldolase-type TIM barrel VagYM4_44440 IPR018225 Transaldolase, active site VagYM4_44440 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial VagYM4_44460 IPR016181 Acyl-CoA N-acyltransferase VagYM4_44460 IPR000182 GNAT domain VagYM4_44480 IPR011701 Major facilitator superfamily VagYM4_44480 IPR023697 Multidrug resistance protein MdtL VagYM4_44480 IPR020846 Major facilitator superfamily domain VagYM4_44480 IPR036259 MFS transporter superfamily VagYM4_44480 IPR005829 Sugar transporter, conserved site VagYM4_44490 IPR037402 HTH-type transcriptional regulator YidZ, PBP2 domain VagYM4_44490 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_44490 IPR023746 Transcription regulator HTH, YidZ VagYM4_44490 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_44490 IPR000847 Transcription regulator HTH, LysR VagYM4_44490 IPR005119 LysR, substrate-binding VagYM4_44500 IPR000620 EamA domain VagYM4_44540 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA VagYM4_44540 IPR006143 RND efflux pump, membrane fusion protein VagYM4_44540 IPR039562 Membrane fusion protein, biotin-lipoyl like domain VagYM4_44560 IPR002549 Transmembrane protein TqsA-like VagYM4_44570 IPR018635 Uncharacterised protein family UPF0319 VagYM4_44580 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain VagYM4_44580 IPR017927 FAD-binding domain, ferredoxin reductase-type VagYM4_44580 IPR033892 Ferredoxin--NADP reductase, bacteria VagYM4_44580 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain VagYM4_44580 IPR001433 Oxidoreductase FAD/NAD(P)-binding VagYM4_44580 IPR017938 Riboflavin synthase-like beta-barrel VagYM4_44600 IPR036361 SAP domain superfamily VagYM4_44600 IPR018668 DNA-binding protein VF530-like VagYM4_44610 IPR000847 Transcription regulator HTH, LysR VagYM4_44610 IPR005119 LysR, substrate-binding VagYM4_44610 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_44610 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_44630 IPR029479 Nitroreductase VagYM4_44630 IPR033878 Nitroreductase NfsB-like VagYM4_44630 IPR000415 Nitroreductase-like VagYM4_44640 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal VagYM4_44640 IPR009057 Homeobox-like domain superfamily VagYM4_44640 IPR018060 DNA binding HTH domain, AraC-type VagYM4_44640 IPR020449 Transcription regulator HTH, AraC- type VagYM4_44650 IPR013780 Glycosyl hydrolase, all-beta VagYM4_44650 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_44650 IPR002044 Carbohydrate binding module family 20 VagYM4_44650 IPR013784 Carbohydrate-binding-like fold VagYM4_44650 IPR031319 Alpha-amylase, C-terminal domain VagYM4_44650 IPR017853 Glycoside hydrolase superfamily VagYM4_44650 IPR013783 Immunoglobulin-like fold VagYM4_44660 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal VagYM4_44660 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal VagYM4_44660 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A VagYM4_44660 IPR012338 Beta-lactamase/transpeptidase-like VagYM4_44660 IPR015956 Penicillin-binding protein, C-terminal domain superfamily VagYM4_44660 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily VagYM4_44670 IPR002410 Peptidase S33 VagYM4_44670 IPR029058 Alpha/Beta hydrolase fold VagYM4_44670 IPR000073 Alpha/beta hydrolase fold-1 VagYM4_44710 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal VagYM4_44710 IPR006050 DNA photolyase, N-terminal VagYM4_44710 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold VagYM4_44710 IPR002081 Cryptochrome/DNA photolyase class 1 VagYM4_44710 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily VagYM4_44710 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily VagYM4_44710 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain VagYM4_44720 IPR036378 FAS1 domain superfamily VagYM4_44720 IPR000782 FAS1 domain VagYM4_44730 IPR004302 Cellulose/chitin-binding protein, N-terminal VagYM4_44730 IPR014756 Immunoglobulin E-set VagYM4_44730 IPR020879 N-acetylglucosamine-binding protein A VagYM4_44730 IPR041029 N-acetylglucosamine binding protein A domain 2 VagYM4_44740 IPR037483 YjjU-like VagYM4_44740 IPR002641 Patatin-like phospholipase domain VagYM4_44740 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase VagYM4_44750 IPR002771 Multiple antibiotic resistance (MarC)-related VagYM4_44760 IPR016446 Flavin oxidoreductase Frp family VagYM4_44760 IPR029479 Nitroreductase VagYM4_44760 IPR000415 Nitroreductase-like VagYM4_44780 IPR003715 Polysaccharide export protein VagYM4_44780 IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain VagYM4_44780 IPR019554 Soluble ligand binding domain VagYM4_44790 IPR036196 Phosphotyrosine protein phosphatase I superfamily VagYM4_44790 IPR017867 Protein-tyrosine phosphatase, low molecular weight VagYM4_44790 IPR023485 Phosphotyrosine protein phosphatase I VagYM4_44800 IPR025669 AAA domain VagYM4_44800 IPR005702 Exopolysaccharide synthesis protein VagYM4_44800 IPR032807 Tyrosine kinase, G-rich domain VagYM4_44800 IPR003856 Polysaccharide chain length determinant N-terminal domain VagYM4_44800 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_44820 IPR033380 Glutamate-aspartate symport protein GltP/GltT VagYM4_44820 IPR034703 Proton/glutamate-aspartate symporter GltP VagYM4_44820 IPR036458 Sodium:dicarboxylate symporter superfamily VagYM4_44820 IPR018107 Sodium:dicarboxylate symporter, conserved site VagYM4_44820 IPR001991 Sodium:dicarboxylate symporter VagYM4_44830 IPR010652 Domain of unknown function DUF1232 VagYM4_44840 IPR033845 p-Aminobenzoyl-glutamate hydrolase subunit A VagYM4_44840 IPR036264 Bacterial exopeptidase dimerisation domain VagYM4_44840 IPR017439 Amidohydrolase VagYM4_44840 IPR002933 Peptidase M20 VagYM4_44840 IPR011650 Peptidase M20, dimerisation domain VagYM4_44850 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain VagYM4_44860 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain VagYM4_44880 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_44880 IPR017853 Glycoside hydrolase superfamily VagYM4_44880 IPR014635 Alpha-amylase, MalS type VagYM4_44890 IPR001264 Glycosyl transferase, family 51 VagYM4_44890 IPR023346 Lysozyme-like domain superfamily VagYM4_44890 IPR036950 Penicillin binding protein transglycosylase domain VagYM4_44890 IPR011812 Biosynthetic peptidoglycan transglycosylase VagYM4_44900 IPR037439 1,4-alpha-glucan-branching enzyme VagYM4_44900 IPR014756 Immunoglobulin E-set VagYM4_44900 IPR017853 Glycoside hydrolase superfamily VagYM4_44900 IPR013780 Glycosyl hydrolase, all-beta VagYM4_44900 IPR004193 Glycoside hydrolase, family 13, N-terminal VagYM4_44900 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_44900 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB VagYM4_44900 IPR013783 Immunoglobulin-like fold VagYM4_44900 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta VagYM4_44910 IPR017853 Glycoside hydrolase superfamily VagYM4_44910 IPR003385 Glycoside hydrolase, family 77 VagYM4_44920 IPR035090 Phosphorylase pyridoxal-phosphate attachment site VagYM4_44920 IPR000811 Glycosyl transferase, family 35 VagYM4_44920 IPR011833 Glycogen/starch/alpha-glucan phosphorylase VagYM4_44930 IPR011990 Tetratricopeptide-like helical domain superfamily VagYM4_44930 IPR041617 MalT-like TPR region VagYM4_44930 IPR000792 Transcription regulator LuxR, C-terminal VagYM4_44930 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_44930 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_44930 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_44930 IPR023768 Transcriptional regulator HTH-type, MalT VagYM4_44960 IPR003782 Copper chaperone SCO1/SenC VagYM4_44960 IPR036249 Thioredoxin-like superfamily VagYM4_44970 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component VagYM4_44970 IPR001996 Phosphotransferase system, IIB component, type 1 VagYM4_44970 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site VagYM4_44970 IPR003352 Phosphotransferase system, EIIC VagYM4_44970 IPR036878 Glucose permease domain IIB VagYM4_44970 IPR013013 Phosphotransferase system, EIIC component, type 1 VagYM4_44980 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain VagYM4_44980 IPR004881 Ribosome biogenesis GTPase RsgA VagYM4_44980 IPR010914 RsgA GTPase domain VagYM4_44980 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_44990 IPR036458 Sodium:dicarboxylate symporter superfamily VagYM4_44990 IPR001991 Sodium:dicarboxylate symporter VagYM4_44990 IPR023025 Serine/threonine transporter SstT VagYM4_45000 IPR029056 Ribokinase-like VagYM4_45000 IPR004625 Pyridoxine kinase VagYM4_45000 IPR023685 Pyridoxal kinase PdxY VagYM4_45000 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase VagYM4_45020 IPR027566 Putrescine transporter PotE VagYM4_45020 IPR004754 Amino acid antiporter VagYM4_45020 IPR002293 Amino acid/polyamine transporter I VagYM4_45030 IPR015421 Pyridoxal phosphate-dependent transferase, major domain VagYM4_45030 IPR015424 Pyridoxal phosphate-dependent transferase VagYM4_45030 IPR011006 CheY-like superfamily VagYM4_45030 IPR027568 Ornithine decarboxylase SpeF VagYM4_45030 IPR011193 Ornithine/lysine/arginine decarboxylase VagYM4_45030 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily VagYM4_45030 IPR027464 Ornithine decarboxylase, N-terminal VagYM4_45030 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal VagYM4_45030 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 VagYM4_45030 IPR000310 Orn/Lys/Arg decarboxylase, major domain VagYM4_45030 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal VagYM4_45060 IPR041111 Pullulanase, Ins domain VagYM4_45060 IPR013784 Carbohydrate-binding-like fold VagYM4_45060 IPR013780 Glycosyl hydrolase, all-beta VagYM4_45060 IPR017853 Glycoside hydrolase superfamily VagYM4_45060 IPR004193 Glycoside hydrolase, family 13, N-terminal VagYM4_45060 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_45060 IPR013783 Immunoglobulin-like fold VagYM4_45060 IPR014756 Immunoglobulin E-set VagYM4_45060 IPR011839 Alpha-1,6-glucosidases, pullulanase-type VagYM4_45060 IPR005323 Pullulanase, carbohydrate-binding module 41 VagYM4_45060 IPR040671 Pullulanase, N2 domain VagYM4_45060 IPR024561 Alpha-1,6-glucosidases, pullulanase-type, C-terminal VagYM4_45070 IPR007346 Endonuclease I VagYM4_45080 IPR013780 Glycosyl hydrolase, all-beta VagYM4_45080 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_45080 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain VagYM4_45080 IPR017853 Glycoside hydrolase superfamily VagYM4_45080 IPR013783 Immunoglobulin-like fold VagYM4_45080 IPR032091 Maltogenic Amylase, C-terminal VagYM4_45110 IPR003192 Porin, LamB-type VagYM4_45110 IPR036998 Porin, LamB-type superfamily VagYM4_45110 IPR023738 Maltoporin VagYM4_45120 IPR017853 Glycoside hydrolase superfamily VagYM4_45120 IPR013783 Immunoglobulin-like fold VagYM4_45120 IPR014756 Immunoglobulin E-set VagYM4_45120 IPR011837 Glycogen debranching enzyme, GlgX type VagYM4_45120 IPR013780 Glycosyl hydrolase, all-beta VagYM4_45120 IPR006047 Glycosyl hydrolase, family 13, catalytic domain VagYM4_45120 IPR004193 Glycoside hydrolase, family 13, N-terminal VagYM4_45140 IPR011701 Major facilitator superfamily VagYM4_45140 IPR020846 Major facilitator superfamily domain VagYM4_45140 IPR036259 MFS transporter superfamily VagYM4_45140 IPR023697 Multidrug resistance protein MdtL VagYM4_45190 IPR007340 Opacity-associated protein A VagYM4_45190 IPR016047 Peptidase M23 VagYM4_45190 IPR011055 Duplicated hybrid motif VagYM4_45200 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like VagYM4_45200 IPR011765 Peptidase M16, N-terminal VagYM4_45200 IPR001431 Peptidase M16, zinc-binding site VagYM4_45200 IPR007863 Peptidase M16, C-terminal VagYM4_45210 IPR004090 Chemotaxis methyl-accepting receptor VagYM4_45210 IPR003660 HAMP domain VagYM4_45210 IPR033480 Single Cache domain 2 VagYM4_45210 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_45220 IPR003439 ABC transporter-like VagYM4_45220 IPR017871 ABC transporter, conserved site VagYM4_45220 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_45220 IPR003593 AAA+ ATPase domain VagYM4_45230 IPR000522 ABC transporter, permease protein, BtuC-like VagYM4_45230 IPR037294 ABC transporter, BtuC-like VagYM4_45240 IPR000522 ABC transporter, permease protein, BtuC-like VagYM4_45240 IPR037294 ABC transporter, BtuC-like VagYM4_45250 IPR002491 ABC transporter periplasmic binding domain VagYM4_45260 IPR010105 TonB-dependent siderophore receptor VagYM4_45260 IPR010916 TonB box, conserved site VagYM4_45260 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_45260 IPR012910 TonB-dependent receptor, plug domain VagYM4_45260 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_45260 IPR011662 Secretin/TonB, short N-terminal domain VagYM4_45260 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_45260 IPR010917 TonB-dependent receptor, conserved site VagYM4_45270 IPR000531 TonB-dependent receptor-like, beta-barrel VagYM4_45270 IPR037066 TonB-dependent receptor, plug domain superfamily VagYM4_45270 IPR039423 TonB-dependent receptor-like VagYM4_45270 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily VagYM4_45270 IPR010105 TonB-dependent siderophore receptor VagYM4_45270 IPR012910 TonB-dependent receptor, plug domain VagYM4_45280 IPR008948 L-Aspartase-like VagYM4_45280 IPR022761 Fumarate lyase, N-terminal VagYM4_45280 IPR000362 Fumarate lyase family VagYM4_45280 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain VagYM4_45280 IPR003806 ATP-grasp fold, PylC-type VagYM4_45280 IPR024083 Fumarase/histidase, N-terminal VagYM4_45280 IPR009049 Argininosuccinate lyase VagYM4_45280 IPR011761 ATP-grasp fold VagYM4_45290 IPR022770 Ferric iron reductase FhuF domain VagYM4_45290 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal VagYM4_45290 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like VagYM4_45310 IPR037455 Aerobactin siderophore biosynthesis, IucA/IucC-like VagYM4_45310 IPR022770 Ferric iron reductase FhuF domain VagYM4_45310 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal VagYM4_45320 IPR029066 PLP-binding barrel VagYM4_45320 IPR002433 Ornithine decarboxylase VagYM4_45320 IPR000183 Ornithine/DAP/Arg decarboxylase VagYM4_45320 IPR022272 Lipocalin family conserved site VagYM4_45320 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal VagYM4_45320 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal VagYM4_45320 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal VagYM4_45330 IPR006059 Bacterial extracellular solute-binding protein VagYM4_45340 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_45340 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_45340 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_45340 IPR005467 Histidine kinase domain VagYM4_45340 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_45340 IPR013727 Two-component sensor kinase, N-terminal VagYM4_45340 IPR003660 HAMP domain VagYM4_45340 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_45350 IPR039420 Transcriptional regulatory protein WalR-like VagYM4_45350 IPR001867 OmpR/PhoB-type DNA-binding domain VagYM4_45350 IPR016032 Signal transduction response regulator, C-terminal effector VagYM4_45350 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_45350 IPR001789 Signal transduction response regulator, receiver domain VagYM4_45350 IPR011006 CheY-like superfamily VagYM4_45360 IPR001996 Phosphotransferase system, IIB component, type 1 VagYM4_45360 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component VagYM4_45360 IPR013013 Phosphotransferase system, EIIC component, type 1 VagYM4_45360 IPR011299 PTS system glucose-specific IIBC component VagYM4_45360 IPR003352 Phosphotransferase system, EIIC VagYM4_45360 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site VagYM4_45360 IPR036878 Glucose permease domain IIB VagYM4_45400 IPR013216 Methyltransferase type 11 VagYM4_45400 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC VagYM4_45400 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_45420 IPR001173 Glycosyltransferase 2-like VagYM4_45420 IPR029044 Nucleotide-diphospho-sugar transferases VagYM4_45450 IPR003593 AAA+ ATPase domain VagYM4_45450 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_45450 IPR003439 ABC transporter-like VagYM4_45450 IPR017871 ABC transporter, conserved site VagYM4_45490 IPR036102 OsmC/Ohr superfamily VagYM4_45490 IPR003718 OsmC/Ohr family VagYM4_45490 IPR019953 Organic hydroperoxide resistance protein famiy VagYM4_45490 IPR015946 K homology domain-like, alpha/beta VagYM4_45500 IPR000835 MarR-type HTH domain VagYM4_45500 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_45500 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_45510 IPR017559 Alkyl hydroperoxide reductase subunit C VagYM4_45510 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant VagYM4_45510 IPR024706 Peroxiredoxin, AhpC-type VagYM4_45510 IPR036249 Thioredoxin-like superfamily VagYM4_45510 IPR019479 Peroxiredoxin, C-terminal VagYM4_45510 IPR013766 Thioredoxin domain VagYM4_45520 IPR012081 Alkyl hydroperoxide reductase subunit F VagYM4_45520 IPR023753 FAD/NAD(P)-binding domain VagYM4_45520 IPR036249 Thioredoxin-like superfamily VagYM4_45520 IPR002109 Glutaredoxin VagYM4_45520 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site VagYM4_45520 IPR012336 Thioredoxin-like fold VagYM4_45520 IPR036188 FAD/NAD(P)-binding domain superfamily VagYM4_45550 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_45550 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_45550 IPR000847 Transcription regulator HTH, LysR VagYM4_45550 IPR005119 LysR, substrate-binding VagYM4_45560 IPR029062 Class I glutamine amidotransferase-like VagYM4_45560 IPR002818 DJ-1/PfpI VagYM4_45560 IPR009057 Homeobox-like domain superfamily VagYM4_45560 IPR018060 DNA binding HTH domain, AraC-type VagYM4_45560 IPR018062 HTH domain AraC-type, conserved site VagYM4_45570 IPR013324 RNA polymerase sigma factor, region 3/4-like VagYM4_45570 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 VagYM4_45570 IPR007627 RNA polymerase sigma-70 region 2 VagYM4_45570 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site VagYM4_45570 IPR014296 RNA polymerase sigma-M, bacillaceae VagYM4_45570 IPR014284 RNA polymerase sigma-70 like domain VagYM4_45570 IPR039425 RNA polymerase sigma-70 like VagYM4_45570 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_45570 IPR013325 RNA polymerase sigma factor, region 2 VagYM4_45610 IPR005302 Molybdenum cofactor sulfurase, C-terminal VagYM4_45610 IPR011037 Pyruvate kinase-like, insert domain superfamily VagYM4_45610 IPR005163 3-alpha domain VagYM4_45660 IPR009594 Transcription regulator HTH, AraC, N-terminal VagYM4_45660 IPR009057 Homeobox-like domain superfamily VagYM4_45660 IPR018060 DNA binding HTH domain, AraC-type VagYM4_45680 IPR039421 Type I protein exporter VagYM4_45680 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_45680 IPR017871 ABC transporter, conserved site VagYM4_45680 IPR003593 AAA+ ATPase domain VagYM4_45680 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_45680 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_45680 IPR003439 ABC transporter-like VagYM4_45700 IPR011991 ArsR-like helix-turn-helix domain VagYM4_45700 IPR000485 AsnC-type HTH domain VagYM4_45700 IPR011008 Dimeric alpha-beta barrel VagYM4_45700 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain VagYM4_45700 IPR019888 Transcription regulator AsnC-type VagYM4_45700 IPR036390 Winged helix DNA-binding domain superfamily VagYM4_45700 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_45700 IPR019885 Transcription regulator HTH, AsnC-type, conserved site VagYM4_45730 IPR016181 Acyl-CoA N-acyltransferase VagYM4_45730 IPR000182 GNAT domain VagYM4_45760 IPR018212 Sodium/solute symporter, conserved site VagYM4_45760 IPR011851 Sodium/proline symporter VagYM4_45760 IPR038377 Sodium/glucose symporter superfamily VagYM4_45760 IPR001734 Sodium/solute symporter VagYM4_45770 IPR038377 Sodium/glucose symporter superfamily VagYM4_45770 IPR018212 Sodium/solute symporter, conserved site VagYM4_45770 IPR001734 Sodium/solute symporter VagYM4_45770 IPR011851 Sodium/proline symporter VagYM4_45790 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 VagYM4_45790 IPR016163 Aldehyde dehydrogenase, C-terminal VagYM4_45790 IPR016161 Aldehyde/histidinol dehydrogenase VagYM4_45790 IPR016160 Aldehyde dehydrogenase, cysteine active site VagYM4_45790 IPR029510 Aldehyde dehydrogenase, glutamic acid active site VagYM4_45790 IPR016162 Aldehyde dehydrogenase, N-terminal VagYM4_45790 IPR013321 Arc-type ribbon-helix-helix VagYM4_45790 IPR025703 Bifunctional protein PutA VagYM4_45790 IPR029041 FAD-linked oxidoreductase-like VagYM4_45790 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain VagYM4_45790 IPR024090 Proline dehydrogenase PutA, domain I VagYM4_45790 IPR024089 Proline dehydrogenase PutA, domain I/II VagYM4_45790 IPR024082 Proline dehydrogenase PutA, domain II VagYM4_45790 IPR002872 Proline dehydrogenase domain VagYM4_45790 IPR010985 Ribbon-helix-helix VagYM4_45790 IPR015590 Aldehyde dehydrogenase domain VagYM4_45800 IPR020449 Transcription regulator HTH, AraC- type VagYM4_45800 IPR011051 RmlC-like cupin domain superfamily VagYM4_45800 IPR014710 RmlC-like jelly roll fold VagYM4_45800 IPR018062 HTH domain AraC-type, conserved site VagYM4_45800 IPR018060 DNA binding HTH domain, AraC-type VagYM4_45800 IPR009057 Homeobox-like domain superfamily VagYM4_45820 IPR012349 FMN-binding split barrel VagYM4_45820 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal VagYM4_45820 IPR000659 Pyridoxamine 5'-phosphate oxidase VagYM4_45820 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site VagYM4_45820 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative VagYM4_45830 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) VagYM4_45830 IPR004358 Signal transduction histidine kinase-related protein, C-terminal VagYM4_45830 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily VagYM4_45830 IPR033479 Double Cache domain 1 VagYM4_45830 IPR003594 Histidine kinase/HSP90-like ATPase VagYM4_45830 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain VagYM4_45830 IPR029151 Periplasmic sensor-like domain superfamily VagYM4_45830 IPR005467 Histidine kinase domain VagYM4_45830 IPR036890 Histidine kinase/HSP90-like ATPase superfamily VagYM4_45840 IPR025944 Sigma-54 interaction domain, conserved site VagYM4_45840 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 VagYM4_45840 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 VagYM4_45840 IPR001789 Signal transduction response regulator, receiver domain VagYM4_45840 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_45840 IPR002197 DNA binding HTH domain, Fis-type VagYM4_45840 IPR009057 Homeobox-like domain superfamily VagYM4_45840 IPR011006 CheY-like superfamily VagYM4_45840 IPR002078 RNA polymerase sigma factor 54 interaction domain VagYM4_45840 IPR003593 AAA+ ATPase domain VagYM4_45850 IPR006144 Secretion protein HlyD, conserved site VagYM4_45850 IPR010129 Type I secretion membrane fusion protein, HlyD family VagYM4_45880 IPR005074 Peptidase C39, bacteriocin processing VagYM4_45880 IPR003593 AAA+ ATPase domain VagYM4_45880 IPR011527 ABC transporter type 1, transmembrane domain VagYM4_45880 IPR039395 Peptidase C39-like A VagYM4_45880 IPR017871 ABC transporter, conserved site VagYM4_45880 IPR003439 ABC transporter-like VagYM4_45880 IPR010132 ATPase, type I secretion system, HlyB VagYM4_45880 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_45880 IPR039421 Type I protein exporter VagYM4_45880 IPR036640 ABC transporter type 1, transmembrane domain superfamily VagYM4_45910 IPR005025 NADPH-dependent FMN reductase-like VagYM4_45910 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic VagYM4_45910 IPR010089 Flavoprotein WrbA-like VagYM4_45910 IPR029039 Flavoprotein-like superfamily VagYM4_45910 IPR008254 Flavodoxin/nitric oxide synthase VagYM4_45920 IPR000914 Solute-binding protein family 5 domain VagYM4_45920 IPR030678 Peptide/nickel binding protein, MppA-type VagYM4_45920 IPR023765 Solute-binding protein family 5, conserved site VagYM4_45920 IPR039424 Solute-binding protein family 5 VagYM4_45930 IPR000834 Peptidase M14, carboxypeptidase A VagYM4_45940 IPR001347 Sugar isomerase (SIS) VagYM4_45940 IPR022821 Transcription regulator HTH, MurR VagYM4_45940 IPR035472 RpiR-like, SIS domain VagYM4_45940 IPR000281 Helix-turn-helix protein RpiR VagYM4_45940 IPR009057 Homeobox-like domain superfamily VagYM4_45940 IPR036388 Winged helix-like DNA-binding domain superfamily VagYM4_45950 IPR005486 Glucokinase regulatory protein, conserved site VagYM4_45950 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein VagYM4_45950 IPR001347 Sugar isomerase (SIS) VagYM4_45950 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ VagYM4_45960 IPR001996 Phosphotransferase system, IIB component, type 1 VagYM4_45960 IPR013013 Phosphotransferase system, EIIC component, type 1 VagYM4_45960 IPR003352 Phosphotransferase system, EIIC VagYM4_45960 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site VagYM4_45960 IPR036878 Glucose permease domain IIB VagYM4_45970 IPR033900 Porin domain, Gram-negative type VagYM4_45970 IPR023614 Porin domain superfamily VagYM4_45970 IPR001897 Porin, gammaproteobacterial VagYM4_45970 IPR001702 Porin, Gram-negative type VagYM4_45990 IPR018357 Hexapeptide transferase, conserved site VagYM4_45990 IPR011004 Trimeric LpxA-like superfamily VagYM4_45990 IPR001451 Hexapeptide repeat VagYM4_46010 IPR032672 TmcA/NAT10/Kre33 VagYM4_46010 IPR027417 P-loop containing nucleoside triphosphate hydrolase VagYM4_46010 IPR007807 Helicase domain VagYM4_46010 IPR000182 GNAT domain VagYM4_46010 IPR016181 Acyl-CoA N-acyltransferase VagYM4_46010 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA VagYM4_46020 IPR004437 ParB/RepB/Spo0J partition protein VagYM4_46020 IPR014884 ParB protein family, C-terminal VagYM4_46020 IPR003115 ParB/Sulfiredoxin VagYM4_46030 IPR025669 AAA domain VagYM4_46030 IPR041250 ParA helix turn helix domain VagYM4_46030 IPR027417 P-loop containing nucleoside triphosphate hydrolase