locus-tag class description VagYM4_00010 PF11638 DnaA N-terminal domain VagYM4_00010 PF00308 Bacterial dnaA protein VagYM4_00010 PF08299 Bacterial dnaA protein helix-turn-helix VagYM4_00020 PF02767 DNA polymerase III beta subunit, central domain VagYM4_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain VagYM4_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain VagYM4_00030 PF02463 RecF/RecN/SMC N terminal domain VagYM4_00040 PF00204 DNA gyrase B VagYM4_00040 PF01751 Toprim domain VagYM4_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_00040 PF18053 DNA gyrase B subunit insert domain VagYM4_00040 PF00986 DNA gyrase B subunit, carboxyl terminus VagYM4_00070 PF00011 Hsp20/alpha crystallin family VagYM4_00080 PF00155 Aminotransferase class I and II VagYM4_00090 PF00128 Alpha amylase, catalytic domain VagYM4_00100 PF02092 Glycyl-tRNA synthetase beta subunit VagYM4_00100 PF05746 DALR anticodon binding domain VagYM4_00110 PF02091 Glycyl-tRNA synthetase alpha subunit VagYM4_00120 PF01169 Uncharacterized protein family UPF0016 VagYM4_00140 PF01206 Sulfurtransferase TusA VagYM4_00160 PF03466 LysR substrate binding domain VagYM4_00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_00170 PF00107 Zinc-binding dehydrogenase VagYM4_00170 PF08240 Alcohol dehydrogenase GroES-like domain VagYM4_00180 PF00108 Thiolase, N-terminal domain VagYM4_00180 PF02803 Thiolase, C-terminal domain VagYM4_00190 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VagYM4_00190 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VagYM4_00190 PF00378 Enoyl-CoA hydratase/isomerase VagYM4_00200 PF09186 Domain of unknown function (DUF1949) VagYM4_00200 PF01205 Uncharacterized protein family UPF0029 VagYM4_00210 PF02386 Cation transport protein VagYM4_00220 PF12724 Flavodoxin domain VagYM4_00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_00230 PF03466 LysR substrate binding domain VagYM4_00240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VagYM4_00240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VagYM4_00250 PF04380 Membrane fusogenic activity VagYM4_00260 PF00873 AcrB/AcrD/AcrF family VagYM4_00270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_00280 PF00440 Bacterial regulatory proteins, tetR family VagYM4_00280 PF16295 Tetracyclin repressor-like, C-terminal domain VagYM4_00290 PF00580 UvrD/REP helicase N-terminal domain VagYM4_00290 PF13361 UvrD-like helicase C-terminal domain VagYM4_00300 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VagYM4_00320 PF00005 ABC transporter VagYM4_00320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_00330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_00350 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_00350 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM4_00420 PF00356 Bacterial regulatory proteins, lacI family VagYM4_00420 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VagYM4_00430 PF03466 LysR substrate binding domain VagYM4_00430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_00440 PF00893 Small Multidrug Resistance protein VagYM4_00450 PF00893 Small Multidrug Resistance protein VagYM4_00460 PF00920 Dehydratase family VagYM4_00470 PF01202 Shikimate kinase VagYM4_00480 PF02447 GntP family permease VagYM4_00490 PF01081 KDPG and KHG aldolase VagYM4_00500 PF01048 Phosphorylase superfamily VagYM4_00510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_00510 PF03466 LysR substrate binding domain VagYM4_00520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_00520 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_00530 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VagYM4_00540 PF01432 Peptidase family M3 VagYM4_00550 PF01037 Lrp/AsnC ligand binding domain VagYM4_00560 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_00560 PF08448 PAS fold VagYM4_00560 PF00563 EAL domain VagYM4_00570 PF04445 Putative SAM-dependent methyltransferase VagYM4_00590 PF00892 EamA-like transporter family VagYM4_00600 PF00582 Universal stress protein family VagYM4_00610 PF00210 Ferritin-like domain VagYM4_00620 PF10625 Universal stress protein B (UspB) VagYM4_00640 PF02954 Bacterial regulatory protein, Fis family VagYM4_00640 PF00158 Sigma-54 interaction domain VagYM4_00640 PF00072 Response regulator receiver domain VagYM4_00690 PF00781 Diacylglycerol kinase catalytic domain VagYM4_00750 PF01594 AI-2E family transporter VagYM4_00760 PF03707 Bacterial signalling protein N terminal repeat VagYM4_00760 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_00760 PF00563 EAL domain VagYM4_00780 PF02646 RmuC family VagYM4_00790 PF01209 ubiE/COQ5 methyltransferase family VagYM4_00800 PF02036 SCP-2 sterol transfer family VagYM4_00810 PF03109 ABC1 family VagYM4_00820 PF02416 mttA/Hcf106 family VagYM4_00830 PF02416 mttA/Hcf106 family VagYM4_00840 PF00902 Sec-independent protein translocase protein (TatC) VagYM4_00850 PF01026 TatD related DNase VagYM4_00860 PF00490 Delta-aminolevulinic acid dehydratase VagYM4_00870 PF00583 Acetyltransferase (GNAT) family VagYM4_00880 PF00476 DNA polymerase family A VagYM4_00880 PF01367 5'-3' exonuclease, C-terminal SAM fold VagYM4_00880 PF01612 3'-5' exonuclease VagYM4_00880 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VagYM4_00890 PF01926 50S ribosome-binding GTPase VagYM4_00900 PF00034 Cytochrome c VagYM4_00920 PF04220 Der GTPase activator (YihI) VagYM4_00930 PF10675 Protein of unknown function (DUF2489) VagYM4_00940 PF06969 HemN C-terminal domain VagYM4_00940 PF04055 Radical SAM superfamily VagYM4_00950 PF00962 Adenosine/AMP deaminase VagYM4_00960 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_00960 PF03707 Bacterial signalling protein N terminal repeat VagYM4_00960 PF00563 EAL domain VagYM4_00970 PF00158 Sigma-54 interaction domain VagYM4_00970 PF02954 Bacterial regulatory protein, Fis family VagYM4_00970 PF00072 Response regulator receiver domain VagYM4_00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_00980 PF00989 PAS fold VagYM4_00980 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_01000 PF03951 Glutamine synthetase, beta-Grasp domain VagYM4_01000 PF00120 Glutamine synthetase, catalytic domain VagYM4_01040 PF03631 Virulence factor BrkB VagYM4_01050 PF02580 D-Tyr-tRNA(Tyr) deacylase VagYM4_01060 PF00583 Acetyltransferase (GNAT) family VagYM4_01060 PF09500 Putative thioesterase (yiiD_Cterm) VagYM4_01080 PF01293 Phosphoenolpyruvate carboxykinase VagYM4_01090 PF01430 Hsp33 protein VagYM4_01100 PF01479 S4 domain VagYM4_01110 PF11356 Type II secretion system protein C VagYM4_01120 PF00263 Bacterial type II and III secretion system protein VagYM4_01120 PF03958 Bacterial type II/III secretion system short domain VagYM4_01130 PF00437 Type II/IV secretion system protein VagYM4_01140 PF00482 Type II secretion system (T2SS), protein F VagYM4_01150 PF08334 Type II secretion system (T2SS), protein G VagYM4_01150 PF07963 Prokaryotic N-terminal methylation motif VagYM4_01160 PF12019 Type II transport protein GspH VagYM4_01170 PF02501 Type II secretion system (T2SS), protein I VagYM4_01170 PF07963 Prokaryotic N-terminal methylation motif VagYM4_01180 PF07963 Prokaryotic N-terminal methylation motif VagYM4_01180 PF11612 Type II secretion system (T2SS), protein J VagYM4_01190 PF03934 Type II secretion system (T2SS), protein K VagYM4_01200 PF12693 GspL periplasmic domain VagYM4_01200 PF05134 Type II secretion system (T2SS), protein L VagYM4_01210 PF04612 Type II secretion system (T2SS), protein M VagYM4_01220 PF01203 Type II secretion system (T2SS), protein N VagYM4_01230 PF00459 Inositol monophosphatase family VagYM4_01240 PF00293 NUDIX domain VagYM4_01250 PF01521 Iron-sulphur cluster biosynthesis VagYM4_01250 PF01106 NifU-like domain VagYM4_01260 PF00156 Phosphoribosyl transferase domain VagYM4_01270 PF00561 alpha/beta hydrolase fold VagYM4_01290 PF09371 Tex-like protein N-terminal domain VagYM4_01290 PF17674 HHH domain VagYM4_01290 PF16921 Tex protein YqgF-like domain VagYM4_01290 PF00575 S1 RNA binding domain VagYM4_01310 PF01272 Transcription elongation factor, GreA/GreB, C-term VagYM4_01310 PF03449 Transcription elongation factor, N-terminal VagYM4_01330 PF00486 Transcriptional regulatory protein, C terminal VagYM4_01330 PF00072 Response regulator receiver domain VagYM4_01340 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_01340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_01340 PF00672 HAMP domain VagYM4_01350 PF00860 Permease family VagYM4_01360 PF17191 RecG wedge domain VagYM4_01360 PF00271 Helicase conserved C-terminal domain VagYM4_01360 PF00270 DEAD/DEAH box helicase VagYM4_01370 PF12105 SpoU, rRNA methylase, C-terminal VagYM4_01370 PF00588 SpoU rRNA Methylase family VagYM4_01380 PF02824 TGS domain VagYM4_01380 PF04607 Region found in RelA / SpoT proteins VagYM4_01380 PF13291 ACT domain VagYM4_01390 PF01192 RNA polymerase Rpb6 VagYM4_01400 PF00625 Guanylate kinase VagYM4_01430 PF02472 Biopolymer transport protein ExbD/TolR VagYM4_01440 PF01618 MotA/TolQ/ExbB proton channel family VagYM4_01470 PF00593 TonB dependent receptor VagYM4_01470 PF07715 TonB-dependent Receptor Plug Domain VagYM4_01480 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_01490 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM4_01490 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_01500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_01510 PF00005 ABC transporter VagYM4_01510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_01520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_01520 PF00005 ABC transporter VagYM4_01540 PF08340 Domain of unknown function (DUF1732) VagYM4_01540 PF03755 YicC-like family, N-terminal region VagYM4_01550 PF03725 3' exoribonuclease family, domain 2 VagYM4_01550 PF01138 3' exoribonuclease family, domain 1 VagYM4_01570 PF03279 Bacterial lipid A biosynthesis acyltransferase VagYM4_01580 PF00440 Bacterial regulatory proteins, tetR family VagYM4_01590 PF04127 DNA / pantothenate metabolism flavoprotein VagYM4_01590 PF02441 Flavoprotein VagYM4_01600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_01600 PF00672 HAMP domain VagYM4_01600 PF17200 Single Cache domain 2 VagYM4_01610 PF04002 RadC-like JAB domain VagYM4_01620 PF00830 Ribosomal L28 family VagYM4_01630 PF00471 Ribosomal protein L33 VagYM4_01650 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VagYM4_01650 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VagYM4_01650 PF06827 Zinc finger found in FPG and IleRS VagYM4_01670 PF05686 Glycosyl transferase family 90 VagYM4_01680 PF01467 Cytidylyltransferase-like VagYM4_01690 PF00535 Glycosyl transferase family 2 VagYM4_01700 PF00535 Glycosyl transferase family 2 VagYM4_01710 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VagYM4_01720 PF01219 Prokaryotic diacylglycerol kinase VagYM4_01740 PF16363 GDP-mannose 4,6 dehydratase VagYM4_01750 PF00483 Nucleotidyl transferase VagYM4_01770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VagYM4_01790 PF02719 Polysaccharide biosynthesis protein VagYM4_01800 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VagYM4_01810 PF02350 UDP-N-acetylglucosamine 2-epimerase VagYM4_01820 PF08666 SAF domain VagYM4_01820 PF03102 NeuB family VagYM4_01840 PF00483 Nucleotidyl transferase VagYM4_01850 PF02348 Cytidylyltransferase VagYM4_01860 PF07922 Glycosyltransferase family 52 VagYM4_01870 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VagYM4_01880 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VagYM4_01890 PF03279 Bacterial lipid A biosynthesis acyltransferase VagYM4_01900 PF01370 NAD dependent epimerase/dehydratase family VagYM4_01910 PF06082 Exopolysaccharide biosynthesis protein YbjH VagYM4_01930 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VagYM4_01960 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VagYM4_01960 PF02563 Polysaccharide biosynthesis/export protein VagYM4_01960 PF10531 SLBB domain VagYM4_02030 PF08485 Polysaccharide biosynthesis protein C-terminal VagYM4_02030 PF02719 Polysaccharide biosynthesis protein VagYM4_02040 PF04321 RmlD substrate binding domain VagYM4_02050 PF02350 UDP-N-acetylglucosamine 2-epimerase VagYM4_02070 PF00953 Glycosyl transferase family 4 VagYM4_02080 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VagYM4_02080 PF10996 Beta-Casp domain VagYM4_02080 PF00753 Metallo-beta-lactamase superfamily VagYM4_02090 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VagYM4_02090 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VagYM4_02090 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VagYM4_02110 PF01370 NAD dependent epimerase/dehydratase family VagYM4_02140 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM4_02170 PF00534 Glycosyl transferases group 1 VagYM4_02170 PF13477 Glycosyl transferase 4-like VagYM4_02180 PF02397 Bacterial sugar transferase VagYM4_02200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VagYM4_02210 PF02719 Polysaccharide biosynthesis protein VagYM4_02230 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VagYM4_02230 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VagYM4_02230 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VagYM4_02240 PF00121 Triosephosphate isomerase VagYM4_02280 PF08220 DeoR-like helix-turn-helix domain VagYM4_02280 PF00455 DeoR C terminal sensor domain VagYM4_02290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VagYM4_02300 PF06005 Cell division protein ZapB VagYM4_02310 PF03737 Aldolase/RraA VagYM4_02320 PF01040 UbiA prenyltransferase family VagYM4_02330 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_02330 PF07724 AAA domain (Cdc48 subfamily) VagYM4_02340 PF00227 Proteasome subunit VagYM4_02370 PF00356 Bacterial regulatory proteins, lacI family VagYM4_02380 PF18074 Primosomal protein N C-terminal domain VagYM4_02380 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VagYM4_02380 PF00270 DEAD/DEAH box helicase VagYM4_02380 PF17764 3′ DNA-binding domain (3′BD) VagYM4_02380 PF00271 Helicase conserved C-terminal domain VagYM4_02390 PF01197 Ribosomal protein L31 VagYM4_02400 PF00338 Ribosomal protein S10p/S20e VagYM4_02410 PF00297 Ribosomal protein L3 VagYM4_02420 PF00573 Ribosomal protein L4/L1 family VagYM4_02430 PF00276 Ribosomal protein L23 VagYM4_02440 PF03947 Ribosomal Proteins L2, C-terminal domain VagYM4_02440 PF00181 Ribosomal Proteins L2, RNA binding domain VagYM4_02450 PF00203 Ribosomal protein S19 VagYM4_02460 PF00237 Ribosomal protein L22p/L17e VagYM4_02470 PF07650 KH domain VagYM4_02470 PF00189 Ribosomal protein S3, C-terminal domain VagYM4_02480 PF00252 Ribosomal protein L16p/L10e VagYM4_02490 PF00831 Ribosomal L29 protein VagYM4_02500 PF00366 Ribosomal protein S17 VagYM4_02510 PF00238 Ribosomal protein L14p/L23e VagYM4_02520 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VagYM4_02520 PF00467 KOW motif VagYM4_02530 PF00281 Ribosomal protein L5 VagYM4_02530 PF00673 ribosomal L5P family C-terminus VagYM4_02540 PF00253 Ribosomal protein S14p/S29e VagYM4_02550 PF00410 Ribosomal protein S8 VagYM4_02560 PF00347 Ribosomal protein L6 VagYM4_02570 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VagYM4_02580 PF03719 Ribosomal protein S5, C-terminal domain VagYM4_02580 PF00333 Ribosomal protein S5, N-terminal domain VagYM4_02590 PF00327 Ribosomal protein L30p/L7e VagYM4_02610 PF00344 SecY translocase VagYM4_02620 PF00444 Ribosomal protein L36 VagYM4_02630 PF00416 Ribosomal protein S13/S18 VagYM4_02640 PF00411 Ribosomal protein S11 VagYM4_02650 PF00163 Ribosomal protein S4/S9 N-terminal domain VagYM4_02650 PF01479 S4 domain VagYM4_02660 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VagYM4_02660 PF01000 RNA polymerase Rpb3/RpoA insert domain VagYM4_02660 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VagYM4_02670 PF01196 Ribosomal protein L17 VagYM4_02690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VagYM4_02690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM4_02710 PF13673 Acetyltransferase (GNAT) domain VagYM4_02720 PF00270 DEAD/DEAH box helicase VagYM4_02720 PF00271 Helicase conserved C-terminal domain VagYM4_02720 PF03880 DbpA RNA binding domain VagYM4_02740 PF00149 Calcineurin-like phosphoesterase VagYM4_02740 PF02872 5'-nucleotidase, C-terminal domain VagYM4_02750 PF14824 Sirohaem biosynthesis protein central VagYM4_02750 PF10414 Sirohaem synthase dimerisation region VagYM4_02750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM4_02760 PF01507 Phosphoadenosine phosphosulfate reductase family VagYM4_02770 PF00009 Elongation factor Tu GTP binding domain VagYM4_02780 PF03600 Citrate transporter VagYM4_02780 PF02080 TrkA-C domain VagYM4_02840 PF00005 ABC transporter VagYM4_02860 PF10795 Protein of unknown function (DUF2607) VagYM4_02870 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VagYM4_02880 PF06526 Protein of unknown function (DUF1107) VagYM4_02890 PF01625 Peptide methionine sulfoxide reductase VagYM4_02900 PF01103 Surface antigen VagYM4_02900 PF17243 POTRA domain TamA domain 1 VagYM4_02910 PF04357 TamB, inner membrane protein subunit of TAM complex VagYM4_02920 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VagYM4_02940 PF00719 Inorganic pyrophosphatase VagYM4_02950 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VagYM4_02960 PF08245 Mur ligase middle domain VagYM4_02960 PF01225 Mur ligase family, catalytic domain VagYM4_02960 PF02875 Mur ligase family, glutamate ligase domain VagYM4_02970 PF02441 Flavoprotein VagYM4_02990 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_03000 PF00005 ABC transporter VagYM4_03010 PF03466 LysR substrate binding domain VagYM4_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_03020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM4_03050 PF16868 NMT1-like family VagYM4_03060 PF01316 Arginine repressor, DNA binding domain VagYM4_03060 PF02863 Arginine repressor, C-terminal domain VagYM4_03070 PF00056 lactate/malate dehydrogenase, NAD binding domain VagYM4_03070 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VagYM4_03090 PF00348 Polyprenyl synthetase VagYM4_03100 PF00829 Ribosomal prokaryotic L21 protein VagYM4_03110 PF01016 Ribosomal L27 protein VagYM4_03120 PF01018 GTP1/OBG VagYM4_03120 PF01926 50S ribosome-binding GTPase VagYM4_03130 PF06738 Putative threonine/serine exporter VagYM4_03140 PF12821 Threonine/Serine exporter, ThrE VagYM4_03150 PF00186 Dihydrofolate reductase VagYM4_03160 PF00149 Calcineurin-like phosphoesterase VagYM4_03170 PF04379 ApaG domain VagYM4_03180 PF00398 Ribosomal RNA adenine dimethylase VagYM4_03190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VagYM4_03200 PF09312 SurA N-terminal domain VagYM4_03210 PF04453 LPS transport system D VagYM4_03210 PF03968 OstA-like protein VagYM4_03220 PF05099 Tellurite resistance protein TerB VagYM4_03220 PF00226 DnaJ domain VagYM4_03240 PF00694 Aconitase C-terminal domain VagYM4_03250 PF00330 Aconitase family (aconitate hydratase) VagYM4_03260 PF00180 Isocitrate/isopropylmalate dehydrogenase VagYM4_03270 PF08502 LeuA allosteric (dimerisation) domain VagYM4_03270 PF00682 HMGL-like VagYM4_03290 PF01569 PAP2 superfamily VagYM4_03310 PF03466 LysR substrate binding domain VagYM4_03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_03320 PF00501 AMP-binding enzyme VagYM4_03330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM4_03330 PF00205 Thiamine pyrophosphate enzyme, central domain VagYM4_03330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VagYM4_03340 PF10369 Small subunit of acetolactate synthase VagYM4_03350 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_03350 PF07694 5TMR of 5TMR-LYT VagYM4_03370 PF02887 Pyruvate kinase, alpha/beta domain VagYM4_03370 PF00224 Pyruvate kinase, barrel domain VagYM4_03380 PF08220 DeoR-like helix-turn-helix domain VagYM4_03380 PF00455 DeoR C terminal sensor domain VagYM4_03390 PF01380 SIS domain VagYM4_03410 PF00072 Response regulator receiver domain VagYM4_03410 PF00486 Transcriptional regulatory protein, C terminal VagYM4_03420 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_03420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_03420 PF00672 HAMP domain VagYM4_03430 PF00465 Iron-containing alcohol dehydrogenase VagYM4_03440 PF02733 Dak1 domain VagYM4_03450 PF02734 DAK2 domain VagYM4_03460 PF00391 PEP-utilising enzyme, mobile domain VagYM4_03460 PF02896 PEP-utilising enzyme, TIM barrel domain VagYM4_03460 PF05524 PEP-utilising enzyme, N-terminal VagYM4_03470 PF00989 PAS fold VagYM4_03470 PF02954 Bacterial regulatory protein, Fis family VagYM4_03470 PF00158 Sigma-54 interaction domain VagYM4_03480 PF05068 Mannitol repressor VagYM4_03490 PF01232 Mannitol dehydrogenase Rossmann domain VagYM4_03490 PF08125 Mannitol dehydrogenase C-terminal domain VagYM4_03500 PF02378 Phosphotransferase system, EIIC VagYM4_03500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM4_03500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM4_03560 PF03180 NLPA lipoprotein VagYM4_03570 PF04546 Sigma-70, non-essential region VagYM4_03570 PF04545 Sigma-70, region 4 VagYM4_03570 PF04539 Sigma-70 region 3 VagYM4_03570 PF04542 Sigma-70 region 2 VagYM4_03570 PF00140 Sigma-70 factor, region 1.2 VagYM4_03570 PF03979 Sigma-70 factor, region 1.1 VagYM4_03580 PF10410 DnaB-helicase binding domain of primase VagYM4_03580 PF08278 DNA primase DnaG DnaB-binding VagYM4_03580 PF08275 DNA primase catalytic core, N-terminal domain VagYM4_03580 PF01807 CHC2 zinc finger VagYM4_03590 PF09424 Yqey-like protein VagYM4_03600 PF01165 Ribosomal protein S21 VagYM4_03610 PF00814 Glycoprotease family VagYM4_03620 PF00561 alpha/beta hydrolase fold VagYM4_03630 PF02660 Glycerol-3-phosphate acyltransferase VagYM4_03640 PF02152 Dihydroneopterin aldolase VagYM4_03650 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VagYM4_03660 PF02673 Bacitracin resistance protein BacA VagYM4_03670 PF12627 Probable RNA and SrmB- binding site of polymerase A VagYM4_03670 PF01966 HD domain VagYM4_03670 PF01743 Poly A polymerase head domain VagYM4_03680 PF01471 Putative peptidoglycan binding domain VagYM4_03680 PF13401 AAA domain VagYM4_03710 PF08239 Bacterial SH3 domain VagYM4_03720 PF01384 Phosphate transporter family VagYM4_03730 PF01865 Protein of unknown function DUF47 VagYM4_03740 PF01928 CYTH domain VagYM4_03760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_03760 PF00672 HAMP domain VagYM4_03760 PF02743 Cache domain VagYM4_03770 PF08335 GlnD PII-uridylyltransferase VagYM4_03770 PF03710 Glutamate-ammonia ligase adenylyltransferase VagYM4_03780 PF01467 Cytidylyltransferase-like VagYM4_03780 PF00294 pfkB family carbohydrate kinase VagYM4_03790 PF02321 Outer membrane efflux protein VagYM4_03800 PF00293 NUDIX domain VagYM4_03810 PF06853 Protein of unknown function (DUF1249) VagYM4_03820 PF00149 Calcineurin-like phosphoesterase VagYM4_03830 PF05728 Uncharacterised protein family (UPF0227) VagYM4_03840 PF00204 DNA gyrase B VagYM4_03840 PF00986 DNA gyrase B subunit, carboxyl terminus VagYM4_03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_03840 PF01751 Toprim domain VagYM4_03850 PF03989 DNA gyrase C-terminal domain, beta-propeller VagYM4_03850 PF00521 DNA gyrase/topoisomerase IV, subunit A VagYM4_03860 PF13180 PDZ domain VagYM4_03870 PF00595 PDZ domain VagYM4_03880 PF06295 Protein of unknown function (DUF1043) VagYM4_03890 PF03969 AFG1-like ATPase VagYM4_03900 PF00572 Ribosomal protein L13 VagYM4_03910 PF00380 Ribosomal protein S9/S16 VagYM4_03920 PF00355 Rieske [2Fe-2S] domain VagYM4_03920 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VagYM4_03930 PF00032 Cytochrome b(C-terminal)/b6/petD VagYM4_03930 PF00033 Cytochrome b/b6/petB VagYM4_03940 PF02167 Cytochrome C1 family VagYM4_03950 PF00043 Glutathione S-transferase, C-terminal domain VagYM4_03950 PF02798 Glutathione S-transferase, N-terminal domain VagYM4_03960 PF04386 Stringent starvation protein B VagYM4_03970 PF04972 BON domain VagYM4_03980 PF13580 SIS domain VagYM4_03990 PF02021 Uncharacterised protein family UPF0102 VagYM4_04000 PF04348 LppC putative lipoprotein VagYM4_04010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM4_04020 PF01795 MraW methylase family VagYM4_04030 PF04999 Cell division protein FtsL VagYM4_04040 PF00905 Penicillin binding protein transpeptidase domain VagYM4_04040 PF03717 Penicillin-binding Protein dimerisation domain VagYM4_04050 PF08245 Mur ligase middle domain VagYM4_04050 PF01225 Mur ligase family, catalytic domain VagYM4_04050 PF02875 Mur ligase family, glutamate ligase domain VagYM4_04060 PF02875 Mur ligase family, glutamate ligase domain VagYM4_04060 PF08245 Mur ligase middle domain VagYM4_04060 PF01225 Mur ligase family, catalytic domain VagYM4_04070 PF00953 Glycosyl transferase family 4 VagYM4_04070 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VagYM4_04080 PF08245 Mur ligase middle domain VagYM4_04080 PF02875 Mur ligase family, glutamate ligase domain VagYM4_04090 PF01098 Cell cycle protein VagYM4_04100 PF04101 Glycosyltransferase family 28 C-terminal domain VagYM4_04100 PF03033 Glycosyltransferase family 28 N-terminal domain VagYM4_04110 PF02875 Mur ligase family, glutamate ligase domain VagYM4_04110 PF08245 Mur ligase middle domain VagYM4_04110 PF01225 Mur ligase family, catalytic domain VagYM4_04120 PF03799 Cell division protein FtsQ VagYM4_04120 PF08478 POTRA domain, FtsQ-type VagYM4_04130 PF02491 SHS2 domain inserted in FTSA VagYM4_04140 PF00091 Tubulin/FtsZ family, GTPase domain VagYM4_04140 PF12327 FtsZ family, C-terminal domain VagYM4_04150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VagYM4_04170 PF02810 SEC-C motif VagYM4_04170 PF07516 SecA Wing and Scaffold domain VagYM4_04170 PF07517 SecA DEAD-like domain VagYM4_04170 PF01043 SecA preprotein cross-linking domain VagYM4_04180 PF00293 NUDIX domain VagYM4_04190 PF01113 Dihydrodipicolinate reductase, N-terminus VagYM4_04190 PF05173 Dihydrodipicolinate reductase, C-terminus VagYM4_04210 PF00117 Glutamine amidotransferase class-I VagYM4_04210 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VagYM4_04220 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VagYM4_04220 PF02142 MGS-like domain VagYM4_04220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VagYM4_04250 PF01925 Sulfite exporter TauE/SafE VagYM4_04260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_04260 PF03466 LysR substrate binding domain VagYM4_04270 PF03458 UPF0126 domain VagYM4_04280 PF01497 Periplasmic binding protein VagYM4_04290 PF03186 CobD/Cbib protein VagYM4_04290 PF17113 Regulatory signalling modulator protein AmpE VagYM4_04300 PF01048 Phosphorylase superfamily VagYM4_04320 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_04320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VagYM4_04330 PF01645 Conserved region in glutamate synthase VagYM4_04330 PF04898 Glutamate synthase central domain VagYM4_04330 PF01493 GXGXG motif VagYM4_04330 PF00310 Glutamine amidotransferases class-II VagYM4_04340 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_04340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VagYM4_04350 PF01493 GXGXG motif VagYM4_04350 PF00310 Glutamine amidotransferases class-II VagYM4_04350 PF04898 Glutamate synthase central domain VagYM4_04350 PF01645 Conserved region in glutamate synthase VagYM4_04360 PF16199 Radical_SAM C-terminal domain VagYM4_04360 PF04055 Radical SAM superfamily VagYM4_04370 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_04370 PF00360 Phytochrome region VagYM4_04370 PF00563 EAL domain VagYM4_04370 PF01590 GAF domain VagYM4_04380 PF01627 Hpt domain VagYM4_04380 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_04380 PF00072 Response regulator receiver domain VagYM4_04380 PF18415 Histidine kinase receptor ArcB trans-membrane domain VagYM4_04380 PF00989 PAS fold VagYM4_04400 PF00072 Response regulator receiver domain VagYM4_04400 PF00486 Transcriptional regulatory protein, C terminal VagYM4_04420 PF03737 Aldolase/RraA VagYM4_04440 PF00696 Amino acid kinase family VagYM4_04440 PF01842 ACT domain VagYM4_04440 PF13840 ACT domain VagYM4_04440 PF00742 Homoserine dehydrogenase VagYM4_04440 PF03447 Homoserine dehydrogenase, NAD binding domain VagYM4_04450 PF00288 GHMP kinases N terminal domain VagYM4_04450 PF08544 GHMP kinases C terminal VagYM4_04460 PF14821 Threonine synthase N terminus VagYM4_04460 PF00291 Pyridoxal-phosphate dependent enzyme VagYM4_04480 PF01228 Glycine radical VagYM4_04490 PF01261 Xylose isomerase-like TIM barrel VagYM4_04500 PF03167 Uracil DNA glycosylase superfamily VagYM4_04530 PF01235 Sodium:alanine symporter family VagYM4_04540 PF03883 Peroxide stress protein YaaA VagYM4_04550 PF00270 DEAD/DEAH box helicase VagYM4_04550 PF00271 Helicase conserved C-terminal domain VagYM4_04560 PF05175 Methyltransferase small domain VagYM4_04570 PF05525 Branched-chain amino acid transport protein VagYM4_04580 PF00258 Flavodoxin VagYM4_04590 PF00589 Phage integrase family VagYM4_04590 PF02899 Phage integrase, N-terminal SAM-like domain VagYM4_04600 PF13098 Thioredoxin-like domain VagYM4_04600 PF10411 Disulfide bond isomerase protein N-terminus VagYM4_04610 PF01368 DHH family VagYM4_04610 PF02272 DHHA1 domain VagYM4_04610 PF17768 RecJ OB domain VagYM4_04620 PF00472 RF-1 domain VagYM4_04620 PF03462 PCRF domain VagYM4_04630 PF01336 OB-fold nucleic acid binding domain VagYM4_04630 PF00152 tRNA synthetases class II (D, K and N) VagYM4_04640 PF00072 Response regulator receiver domain VagYM4_04640 PF02954 Bacterial regulatory protein, Fis family VagYM4_04640 PF00158 Sigma-54 interaction domain VagYM4_04670 PF00248 Aldo/keto reductase family VagYM4_04690 PF02976 DNA mismatch repair enzyme MutH VagYM4_04700 PF00293 NUDIX domain VagYM4_04710 PF02896 PEP-utilising enzyme, TIM barrel domain VagYM4_04710 PF00391 PEP-utilising enzyme, mobile domain VagYM4_04710 PF05524 PEP-utilising enzyme, N-terminal VagYM4_04710 PF01590 GAF domain VagYM4_04720 PF01925 Sulfite exporter TauE/SafE VagYM4_04740 PF00303 Thymidylate synthase VagYM4_04760 PF02690 Na+/Pi-cotransporter VagYM4_04770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_04770 PF03466 LysR substrate binding domain VagYM4_04780 PF01022 Bacterial regulatory protein, arsR family VagYM4_04790 PF01649 Ribosomal protein S20 VagYM4_04800 PF03023 Lipid II flippase MurJ VagYM4_04810 PF01687 Riboflavin kinase VagYM4_04810 PF06574 FAD synthetase VagYM4_04820 PF00133 tRNA synthetases class I (I, L, M and V) VagYM4_04820 PF06827 Zinc finger found in FPG and IleRS VagYM4_04820 PF08264 Anticodon-binding domain of tRNA VagYM4_04830 PF01252 Signal peptidase (SPase) II VagYM4_04840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM4_04850 PF02401 LytB protein VagYM4_04860 PF01527 Transposase VagYM4_04870 PF00665 Integrase core domain VagYM4_04890 PF00072 Response regulator receiver domain VagYM4_04890 PF04397 LytTr DNA-binding domain VagYM4_04900 PF07694 5TMR of 5TMR-LYT VagYM4_04900 PF06580 Histidine kinase VagYM4_04910 PF02554 Carbon starvation protein CstA VagYM4_04940 PF01380 SIS domain VagYM4_04950 PF03702 Anhydro-N-acetylmuramic acid kinase VagYM4_04960 PF00933 Glycosyl hydrolase family 3 N terminal domain VagYM4_04970 PF00793 DAHP synthetase I family VagYM4_04980 PF02153 Prephenate dehydrogenase VagYM4_04980 PF01817 Chorismate mutase type II VagYM4_04990 PF01464 Transglycosylase SLT domain VagYM4_04990 PF01551 Peptidase family M23 VagYM4_04990 PF10145 Phage-related minor tail protein VagYM4_05000 PF07238 PilZ domain VagYM4_05010 PF00005 ABC transporter VagYM4_05010 PF12848 ABC transporter VagYM4_05020 PF14718 Soluble lytic murein transglycosylase L domain VagYM4_05020 PF01464 Transglycosylase SLT domain VagYM4_05030 PF01371 Trp repressor protein VagYM4_05040 PF01931 Protein of unknown function DUF84 VagYM4_05050 PF00800 Prephenate dehydratase VagYM4_05050 PF01817 Chorismate mutase type II VagYM4_05060 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VagYM4_05070 PF01464 Transglycosylase SLT domain VagYM4_05070 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_05080 PF13525 Outer membrane lipoprotein VagYM4_05090 PF01479 S4 domain VagYM4_05090 PF00849 RNA pseudouridylate synthase VagYM4_05110 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_05110 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM4_05110 PF17871 AAA lid domain VagYM4_05110 PF07724 AAA domain (Cdc48 subfamily) VagYM4_05110 PF02861 Clp amino terminal domain, pathogenicity island component VagYM4_05130 PF03411 Penicillin-insensitive murein endopeptidase VagYM4_05150 PF00037 4Fe-4S binding domain VagYM4_05170 PF04381 Putative exonuclease, RdgC VagYM4_05180 PF00072 Response regulator receiver domain VagYM4_05180 PF00486 Transcriptional regulatory protein, C terminal VagYM4_05190 PF11808 Phosphate regulon sensor protein PhoR VagYM4_05190 PF00989 PAS fold VagYM4_05190 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_05190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_05200 PF12849 PBP superfamily domain VagYM4_05210 PF02541 Ppx/GppA phosphatase family VagYM4_05220 PF13090 Polyphosphate kinase C-terminal domain 2 VagYM4_05220 PF17941 Polyphosphate kinase C-terminal domain 1 VagYM4_05220 PF02503 Polyphosphate kinase middle domain VagYM4_05220 PF13089 Polyphosphate kinase N-terminal domain VagYM4_05230 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_05240 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_05250 PF00005 ABC transporter VagYM4_05260 PF01895 PhoU domain VagYM4_05270 PF03976 Polyphosphate kinase 2 (PPK2) VagYM4_05280 PF03932 CutC family VagYM4_05290 PF00578 AhpC/TSA family VagYM4_05290 PF10417 C-terminal domain of 1-Cys peroxiredoxin VagYM4_05300 PF03466 LysR substrate binding domain VagYM4_05300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_05310 PF01274 Malate synthase VagYM4_05320 PF00463 Isocitrate lyase family VagYM4_05330 PF00571 CBS domain VagYM4_05350 PF02547 Queuosine biosynthesis protein VagYM4_05360 PF01702 Queuine tRNA-ribosyltransferase VagYM4_05370 PF02699 Preprotein translocase subunit VagYM4_05380 PF07549 SecD/SecF GG Motif VagYM4_05380 PF13721 SecD export protein N-terminal TM region VagYM4_05380 PF02355 Protein export membrane protein VagYM4_05390 PF07549 SecD/SecF GG Motif VagYM4_05390 PF02355 Protein export membrane protein VagYM4_05400 PF00459 Inositol monophosphatase family VagYM4_05410 PF00588 SpoU rRNA Methylase family VagYM4_05420 PF02082 Transcriptional regulator VagYM4_05430 PF00266 Aminotransferase class-V VagYM4_05440 PF01592 NifU-like N terminal domain VagYM4_05450 PF01521 Iron-sulphur cluster biosynthesis VagYM4_05460 PF07743 HSCB C-terminal oligomerisation domain VagYM4_05460 PF00226 DnaJ domain VagYM4_05470 PF00012 Hsp70 protein VagYM4_05480 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM4_05490 PF04384 Iron-sulphur cluster assembly VagYM4_05500 PF12404 Peptidase VagYM4_05500 PF00883 Cytosol aminopeptidase family, catalytic domain VagYM4_05510 PF00334 Nucleoside diphosphate kinase VagYM4_05520 PF04055 Radical SAM superfamily VagYM4_05530 PF13464 Domain of unknown function (DUF4115) VagYM4_05540 PF04551 GcpE protein VagYM4_05550 PF03129 Anticodon binding domain VagYM4_05550 PF13393 Histidyl-tRNA synthetase VagYM4_05560 PF09976 Tetratricopeptide repeat-like domain VagYM4_05570 PF13360 PQQ-like domain VagYM4_05580 PF01926 50S ribosome-binding GTPase VagYM4_05580 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VagYM4_05610 PF02601 Exonuclease VII, large subunit VagYM4_05610 PF13742 OB-fold nucleic acid binding domain VagYM4_05620 PF00478 IMP dehydrogenase / GMP reductase domain VagYM4_05620 PF00571 CBS domain VagYM4_05630 PF00117 Glutamine amidotransferase class-I VagYM4_05630 PF00958 GMP synthase C terminal domain VagYM4_05630 PF02540 NAD synthase VagYM4_05640 PF00589 Phage integrase family VagYM4_05640 PF13356 Arm DNA-binding domain VagYM4_05730 PF18821 Large polyvalent protein-associated domain 7 VagYM4_05730 PF03432 Relaxase/Mobilisation nuclease domain VagYM4_05790 PF02384 N-6 DNA Methylase VagYM4_05810 PF03553 Na+/H+ antiporter family VagYM4_05820 PF00704 Glycosyl hydrolases family 18 VagYM4_05820 PF06483 Chitinase C VagYM4_05830 PF01184 GPR1/FUN34/yaaH family VagYM4_05840 PF01235 Sodium:alanine symporter family VagYM4_05850 PF01266 FAD dependent oxidoreductase VagYM4_05870 PF07969 Amidohydrolase family VagYM4_05880 PF01053 Cys/Met metabolism PLP-dependent enzyme VagYM4_05890 PF00202 Aminotransferase class-III VagYM4_05930 PF00583 Acetyltransferase (GNAT) family VagYM4_05930 PF00795 Carbon-nitrogen hydrolase VagYM4_05940 PF03466 LysR substrate binding domain VagYM4_05940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_05960 PF01668 SmpB protein VagYM4_05970 PF03364 Polyketide cyclase / dehydrase and lipid transport VagYM4_05980 PF03658 RnfH family Ubiquitin VagYM4_05990 PF04355 SmpA / OmlA family VagYM4_06000 PF02463 RecF/RecN/SMC N terminal domain VagYM4_06020 PF01513 ATP-NAD kinase VagYM4_06030 PF01025 GrpE VagYM4_06040 PF00375 Sodium:dicarboxylate symporter family VagYM4_06050 PF00012 Hsp70 protein VagYM4_06060 PF00226 DnaJ domain VagYM4_06060 PF01556 DnaJ C terminal domain VagYM4_06060 PF00684 DnaJ central domain VagYM4_06070 PF00114 Pilin (bacterial filament) VagYM4_06070 PF07963 Prokaryotic N-terminal methylation motif VagYM4_06120 PF03806 AbgT putative transporter family VagYM4_06130 PF14437 MafB19-like deaminase VagYM4_06140 PF01464 Transglycosylase SLT domain VagYM4_06140 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_06150 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VagYM4_06150 PF02769 AIR synthase related protein, C-terminal domain VagYM4_06150 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VagYM4_06180 PF00593 TonB dependent receptor VagYM4_06180 PF07715 TonB-dependent Receptor Plug Domain VagYM4_06210 PF07687 Peptidase dimerisation domain VagYM4_06210 PF01546 Peptidase family M20/M25/M40 VagYM4_06220 PF00860 Permease family VagYM4_06230 PF00156 Phosphoribosyl transferase domain VagYM4_06250 PF07417 Sigma factor-binding transcriptional regulator Crl VagYM4_06260 PF07417 Sigma factor-binding transcriptional regulator Crl VagYM4_06270 PF01472 PUA domain VagYM4_06270 PF00696 Amino acid kinase family VagYM4_06280 PF00171 Aldehyde dehydrogenase family VagYM4_06290 PF03477 ATP cone domain VagYM4_06300 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM4_06300 PF01872 RibD C-terminal domain VagYM4_06310 PF00677 Lumazine binding domain VagYM4_06320 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VagYM4_06320 PF00925 GTP cyclohydrolase II VagYM4_06330 PF00885 6,7-dimethyl-8-ribityllumazine synthase VagYM4_06340 PF01029 NusB family VagYM4_06350 PF00586 AIR synthase related protein, N-terminal domain VagYM4_06350 PF02769 AIR synthase related protein, C-terminal domain VagYM4_06360 PF04608 Phosphatidylglycerophosphatase A VagYM4_06370 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VagYM4_06370 PF02780 Transketolase, C-terminal domain VagYM4_06370 PF02779 Transketolase, pyrimidine binding domain VagYM4_06380 PF00348 Polyprenyl synthetase VagYM4_06390 PF02609 Exonuclease VII small subunit VagYM4_06400 PF01618 MotA/TolQ/ExbB proton channel family VagYM4_06410 PF00691 OmpA family VagYM4_06410 PF13677 Membrane MotB of proton-channel complex MotA/MotB VagYM4_06420 PF02568 Thiamine biosynthesis protein (ThiI) VagYM4_06420 PF02926 THUMP domain VagYM4_06440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_06440 PF03466 LysR substrate binding domain VagYM4_06460 PF04241 Protein of unknown function (DUF423) VagYM4_06470 PF01728 FtsJ-like methyltransferase VagYM4_06470 PF18125 RlmM ferredoxin-like domain VagYM4_06480 PF01367 5'-3' exonuclease, C-terminal SAM fold VagYM4_06480 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VagYM4_06490 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VagYM4_06490 PF11892 Domain of unknown function (DUF3412) VagYM4_06490 PF03641 Possible lysine decarboxylase VagYM4_06500 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_06500 PF00072 Response regulator receiver domain VagYM4_06520 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VagYM4_06520 PF14489 QueF-like protein VagYM4_06530 PF07348 Syd protein (SUKH-2) VagYM4_06540 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VagYM4_06550 PF03180 NLPA lipoprotein VagYM4_06560 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_06570 PF09383 NIL domain VagYM4_06570 PF00005 ABC transporter VagYM4_06590 PF00356 Bacterial regulatory proteins, lacI family VagYM4_06600 PF00367 phosphotransferase system, EIIB VagYM4_06600 PF02378 Phosphotransferase system, EIIC VagYM4_06610 PF00128 Alpha amylase, catalytic domain VagYM4_06610 PF16657 Maltogenic Amylase, C-terminal domain VagYM4_06650 PF00464 Serine hydroxymethyltransferase VagYM4_06660 PF04055 Radical SAM superfamily VagYM4_06660 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VagYM4_06670 PF03099 Biotin/lipoate A/B protein ligase family VagYM4_06680 PF04359 Protein of unknown function (DUF493) VagYM4_06690 PF07943 Penicillin-binding protein 5, C-terminal domain VagYM4_06690 PF00768 D-alanyl-D-alanine carboxypeptidase VagYM4_06700 PF03330 Lytic transglycolase VagYM4_06700 PF05036 Sporulation related domain VagYM4_06710 PF01098 Cell cycle protein VagYM4_06720 PF03717 Penicillin-binding Protein dimerisation domain VagYM4_06720 PF00905 Penicillin binding protein transpeptidase domain VagYM4_06730 PF02590 Predicted SPOUT methyltransferase VagYM4_06750 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VagYM4_06750 PF06144 DNA polymerase III, delta subunit VagYM4_06760 PF04390 Lipopolysaccharide-assembly VagYM4_06770 PF13603 Leucyl-tRNA synthetase, Domain 2 VagYM4_06770 PF08264 Anticodon-binding domain of tRNA VagYM4_06770 PF00133 tRNA synthetases class I (I, L, M and V) VagYM4_06780 PF07295 Zinc-ribbon containing domain VagYM4_06790 PF00795 Carbon-nitrogen hydrolase VagYM4_06800 PF03471 Transporter associated domain VagYM4_06800 PF00571 CBS domain VagYM4_06810 PF02130 Uncharacterized protein family UPF0054 VagYM4_06820 PF02562 PhoH-like protein VagYM4_06830 PF00919 Uncharacterized protein family UPF0004 VagYM4_06830 PF04055 Radical SAM superfamily VagYM4_06830 PF01938 TRAM domain VagYM4_06840 PF01494 FAD binding domain VagYM4_06850 PF01926 50S ribosome-binding GTPase VagYM4_06850 PF06071 Protein of unknown function (DUF933) VagYM4_06860 PF01195 Peptidyl-tRNA hydrolase VagYM4_06870 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VagYM4_06870 PF14572 Phosphoribosyl synthetase-associated domain VagYM4_06880 PF00288 GHMP kinases N terminal domain VagYM4_06880 PF08544 GHMP kinases C terminal VagYM4_06890 PF03550 Outer membrane lipoprotein LolB VagYM4_06900 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VagYM4_06900 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VagYM4_06900 PF01488 Shikimate / quinate 5-dehydrogenase VagYM4_06910 PF00472 RF-1 domain VagYM4_06910 PF03462 PCRF domain VagYM4_06920 PF17827 PrmC N-terminal domain VagYM4_06920 PF13847 Methyltransferase domain VagYM4_06930 PF04247 Invasion gene expression up-regulator, SirB VagYM4_06940 PF13369 Transglutaminase-like superfamily VagYM4_06950 PF00793 DAHP synthetase I family VagYM4_06960 PF00149 Calcineurin-like phosphoesterase VagYM4_06960 PF02872 5'-nucleotidase, C-terminal domain VagYM4_06970 PF04073 Aminoacyl-tRNA editing domain VagYM4_06980 PF00849 RNA pseudouridylate synthase VagYM4_06980 PF01479 S4 domain VagYM4_06990 PF01713 Smr domain VagYM4_07030 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VagYM4_07030 PF02838 Glycosyl hydrolase family 20, domain 2 VagYM4_07030 PF00728 Glycosyl hydrolase family 20, catalytic domain VagYM4_07030 PF03173 Putative carbohydrate binding domain VagYM4_07060 PF00403 Heavy-metal-associated domain VagYM4_07070 PF13609 Gram-negative porin VagYM4_07080 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VagYM4_07090 PF00749 tRNA synthetases class I (E and Q), catalytic domain VagYM4_07100 PF00691 OmpA family VagYM4_07100 PF01389 OmpA-like transmembrane domain VagYM4_07180 PF00072 Response regulator receiver domain VagYM4_07180 PF01584 CheW-like domain VagYM4_07190 PF03705 CheR methyltransferase, all-alpha domain VagYM4_07190 PF01739 CheR methyltransferase, SAM binding domain VagYM4_07200 PF00460 Flagella basal body rod protein VagYM4_07210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_07210 PF00460 Flagella basal body rod protein VagYM4_07220 PF03963 Flagellar hook capping protein - N-terminal region VagYM4_07220 PF13860 FlgD Ig-like domain VagYM4_07220 PF13861 FlgD Tudor-like domain VagYM4_07230 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_07230 PF00460 Flagella basal body rod protein VagYM4_07230 PF07559 Flagellar basal body protein FlaE VagYM4_07240 PF00460 Flagella basal body rod protein VagYM4_07240 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_07250 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_07250 PF00460 Flagella basal body rod protein VagYM4_07260 PF02107 Flagellar L-ring protein VagYM4_07270 PF02119 Flagellar P-ring protein VagYM4_07280 PF10135 Rod binding protein VagYM4_07280 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VagYM4_07290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_07290 PF07196 Flagellin hook IN motif VagYM4_07300 PF00669 Bacterial flagellin N-terminal helical region VagYM4_07320 PF00700 Bacterial flagellin C-terminal helical region VagYM4_07320 PF07196 Flagellin hook IN motif VagYM4_07320 PF00669 Bacterial flagellin N-terminal helical region VagYM4_07330 PF00669 Bacterial flagellin N-terminal helical region VagYM4_07330 PF00700 Bacterial flagellin C-terminal helical region VagYM4_07330 PF07196 Flagellin hook IN motif VagYM4_07340 PF00669 Bacterial flagellin N-terminal helical region VagYM4_07340 PF00700 Bacterial flagellin C-terminal helical region VagYM4_07340 PF07196 Flagellin hook IN motif VagYM4_07350 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VagYM4_07360 PF02896 PEP-utilising enzyme, TIM barrel domain VagYM4_07360 PF00391 PEP-utilising enzyme, mobile domain VagYM4_07360 PF05524 PEP-utilising enzyme, N-terminal VagYM4_07380 PF00381 PTS HPr component phosphorylation site VagYM4_07390 PF00291 Pyridoxal-phosphate dependent enzyme VagYM4_07410 PF04354 ZipA, C-terminal FtsZ-binding domain VagYM4_07420 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VagYM4_07420 PF00533 BRCA1 C Terminus (BRCT) domain VagYM4_07420 PF01653 NAD-dependent DNA ligase adenylation domain VagYM4_07420 PF12826 Helix-hairpin-helix motif VagYM4_07420 PF03120 NAD-dependent DNA ligase OB-fold domain VagYM4_07430 PF03573 outer membrane porin, OprD family VagYM4_07470 PF01145 SPFH domain / Band 7 family VagYM4_07470 PF16200 C-terminal region of band_7 VagYM4_07480 PF00085 Thioredoxin VagYM4_07490 PF00106 short chain dehydrogenase VagYM4_07500 PF01370 NAD dependent epimerase/dehydratase family VagYM4_07500 PF08338 Domain of unknown function (DUF1731) VagYM4_07510 PF07556 Protein of unknown function (DUF1538) VagYM4_07520 PF07556 Protein of unknown function (DUF1538) VagYM4_07560 PF12850 Calcineurin-like phosphoesterase superfamily domain VagYM4_07590 PF17323 Trans-membrane regulatory protein ToxS VagYM4_07600 PF00486 Transcriptional regulatory protein, C terminal VagYM4_07610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_07610 PF00183 Hsp90 protein VagYM4_07620 PF05191 Adenylate kinase, active site lid VagYM4_07630 PF00762 Ferrochelatase VagYM4_07650 PF00854 POT family VagYM4_07660 PF02357 Transcription termination factor nusG VagYM4_07670 PF13537 Glutamine amidotransferase domain VagYM4_07670 PF00733 Asparagine synthase VagYM4_07680 PF02254 TrkA-N domain VagYM4_07680 PF00999 Sodium/hydrogen exchanger family VagYM4_07690 PF00480 ROK family VagYM4_07690 PF01047 MarR family VagYM4_07700 PF01979 Amidohydrolase family VagYM4_07710 PF02378 Phosphotransferase system, EIIC VagYM4_07710 PF00367 phosphotransferase system, EIIB VagYM4_07710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VagYM4_07720 PF00749 tRNA synthetases class I (E and Q), catalytic domain VagYM4_07720 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VagYM4_07730 PF01475 Ferric uptake regulator family VagYM4_07750 PF00258 Flavodoxin VagYM4_07770 PF12697 Alpha/beta hydrolase family VagYM4_07780 PF03925 SeqA protein C-terminal domain VagYM4_07780 PF17206 SeqA protein N-terminal domain VagYM4_07790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VagYM4_07790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VagYM4_07790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VagYM4_07790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VagYM4_07810 PF01784 NIF3 (NGG1p interacting factor 3) VagYM4_07820 PF00285 Citrate synthase, C-terminal domain VagYM4_07830 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VagYM4_07840 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VagYM4_07850 PF00890 FAD binding domain VagYM4_07850 PF02910 Fumarate reductase flavoprotein C-term VagYM4_07860 PF13085 2Fe-2S iron-sulfur cluster binding domain VagYM4_07870 PF02779 Transketolase, pyrimidine binding domain VagYM4_07870 PF00676 Dehydrogenase E1 component VagYM4_07870 PF16078 2-oxoglutarate dehydrogenase N-terminus VagYM4_07870 PF16870 2-oxoglutarate dehydrogenase C-terminal VagYM4_07880 PF02817 e3 binding domain VagYM4_07880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VagYM4_07880 PF00364 Biotin-requiring enzyme VagYM4_07890 PF08442 ATP-grasp domain VagYM4_07890 PF00549 CoA-ligase VagYM4_07900 PF02629 CoA binding domain VagYM4_07900 PF00549 CoA-ligase VagYM4_07910 PF00950 ABC 3 transport family VagYM4_07920 PF00005 ABC transporter VagYM4_07930 PF01297 Zinc-uptake complex component A periplasmic VagYM4_07940 PF02311 AraC-like ligand binding domain VagYM4_07940 PF12833 Helix-turn-helix domain VagYM4_07950 PF04023 FeoA domain VagYM4_07960 PF02421 Ferrous iron transport protein B VagYM4_07960 PF07670 Nucleoside recognition VagYM4_07960 PF07664 Ferrous iron transport protein B C terminus VagYM4_07960 PF17910 FeoB cytosolic helical domain VagYM4_07990 PF05746 DALR anticodon binding domain VagYM4_07990 PF00750 tRNA synthetases class I (R) VagYM4_07990 PF03485 Arginyl tRNA synthetase N terminal domain VagYM4_08000 PF06185 YecM protein VagYM4_08020 PF00089 Trypsin VagYM4_08030 PF01842 ACT domain VagYM4_08030 PF00551 Formyl transferase VagYM4_08040 PF13307 Helicase C-terminal domain VagYM4_08040 PF04851 Type III restriction enzyme, res subunit VagYM4_08050 PF00814 Glycoprotease family VagYM4_08070 PF03843 Outer membrane lipoprotein Slp family VagYM4_08080 PF00561 alpha/beta hydrolase fold VagYM4_08090 PF00501 AMP-binding enzyme VagYM4_08090 PF13193 AMP-binding enzyme C-terminal domain VagYM4_08100 PF01612 3'-5' exonuclease VagYM4_08100 PF00570 HRDC domain VagYM4_08110 PF03776 Septum formation topological specificity factor MinE VagYM4_08120 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VagYM4_08130 PF05209 Septum formation inhibitor MinC, N-terminal domain VagYM4_08130 PF03775 Septum formation inhibitor MinC, C-terminal domain VagYM4_08140 PF05166 YcgL domain VagYM4_08150 PF13406 Transglycosylase SLT domain VagYM4_08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_08160 PF03466 LysR substrate binding domain VagYM4_08170 PF01773 Na+ dependent nucleoside transporter N-terminus VagYM4_08170 PF07670 Nucleoside recognition VagYM4_08170 PF07662 Na+ dependent nucleoside transporter C-terminus VagYM4_08180 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VagYM4_08180 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VagYM4_08190 PF01209 ubiE/COQ5 methyltransferase family VagYM4_08200 PF02801 Beta-ketoacyl synthase, C-terminal domain VagYM4_08200 PF00109 Beta-ketoacyl synthase, N-terminal domain VagYM4_08220 PF07977 FabA-like domain VagYM4_08230 PF02801 Beta-ketoacyl synthase, C-terminal domain VagYM4_08230 PF00109 Beta-ketoacyl synthase, N-terminal domain VagYM4_08280 PF00221 Aromatic amino acid lyase VagYM4_08290 PF00535 Glycosyl transferase family 2 VagYM4_08300 PF07977 FabA-like domain VagYM4_08330 PF00550 Phosphopantetheine attachment site VagYM4_08340 PF00550 Phosphopantetheine attachment site VagYM4_08390 PF04820 Tryptophan halogenase VagYM4_08410 PF01595 Cyclin M transmembrane N-terminal domain VagYM4_08410 PF03471 Transporter associated domain VagYM4_08410 PF00571 CBS domain VagYM4_08420 PF00271 Helicase conserved C-terminal domain VagYM4_08420 PF00270 DEAD/DEAH box helicase VagYM4_08430 PF02254 TrkA-N domain VagYM4_08430 PF02080 TrkA-C domain VagYM4_08440 PF02386 Cation transport protein VagYM4_08470 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VagYM4_08480 PF03480 Bacterial extracellular solute-binding protein, family 7 VagYM4_08490 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VagYM4_08500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VagYM4_08510 PF00072 Response regulator receiver domain VagYM4_08510 PF00158 Sigma-54 interaction domain VagYM4_08510 PF02954 Bacterial regulatory protein, Fis family VagYM4_08520 PF02743 Cache domain VagYM4_08520 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_08520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_08530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM4_08530 PF05697 Bacterial trigger factor protein (TF) VagYM4_08530 PF05698 Bacterial trigger factor protein (TF) C-terminus VagYM4_08540 PF00574 Clp protease VagYM4_08550 PF07724 AAA domain (Cdc48 subfamily) VagYM4_08550 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM4_08550 PF06689 ClpX C4-type zinc finger VagYM4_08560 PF05362 Lon protease (S16) C-terminal proteolytic domain VagYM4_08560 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_08560 PF02190 ATP-dependent protease La (LON) substrate-binding domain VagYM4_08570 PF00216 Bacterial DNA-binding protein VagYM4_08580 PF13145 PPIC-type PPIASE domain VagYM4_08620 PF13286 Phosphohydrolase-associated domain VagYM4_08620 PF01966 HD domain VagYM4_08640 PF00155 Aminotransferase class I and II VagYM4_08650 PF00425 chorismate binding enzyme VagYM4_08660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM4_08660 PF16582 Middle domain of thiamine pyrophosphate VagYM4_08660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VagYM4_08670 PF12697 Alpha/beta hydrolase family VagYM4_08680 PF00378 Enoyl-CoA hydratase/isomerase VagYM4_08690 PF13378 Enolase C-terminal domain-like VagYM4_08700 PF00501 AMP-binding enzyme VagYM4_08700 PF13193 AMP-binding enzyme C-terminal domain VagYM4_08720 PF03601 Conserved hypothetical protein 698 VagYM4_08730 PF07690 Major Facilitator Superfamily VagYM4_08760 PF00529 HlyD membrane-fusion protein of T1SS VagYM4_08760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_08770 PF00873 AcrB/AcrD/AcrF family VagYM4_08810 PF00291 Pyridoxal-phosphate dependent enzyme VagYM4_08820 PF01037 Lrp/AsnC ligand binding domain VagYM4_08820 PF13404 AsnC-type helix-turn-helix domain VagYM4_08850 PF09619 Type III secretion system lipoprotein chaperone (YscW) VagYM4_08860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VagYM4_08880 PF00072 Response regulator receiver domain VagYM4_08880 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_08890 PF01527 Transposase VagYM4_08900 PF00665 Integrase core domain VagYM4_08920 PF03466 LysR substrate binding domain VagYM4_08920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_08960 PF00107 Zinc-binding dehydrogenase VagYM4_08960 PF08240 Alcohol dehydrogenase GroES-like domain VagYM4_08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_08990 PF03466 LysR substrate binding domain VagYM4_09000 PF12706 Beta-lactamase superfamily domain VagYM4_09010 PF12833 Helix-turn-helix domain VagYM4_09010 PF12852 Cupin VagYM4_09020 PF00588 SpoU rRNA Methylase family VagYM4_09020 PF08032 RNA 2'-O ribose methyltransferase substrate binding VagYM4_09030 PF00571 CBS domain VagYM4_09030 PF00478 IMP dehydrogenase / GMP reductase domain VagYM4_09040 PF00403 Heavy-metal-associated domain VagYM4_09050 PF01048 Phosphorylase superfamily VagYM4_09070 PF00672 HAMP domain VagYM4_09070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_09080 PF01230 HIT domain VagYM4_09110 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VagYM4_09110 PF13036 Peptidoglycan-synthase activator LpoB VagYM4_09120 PF01636 Phosphotransferase enzyme family VagYM4_09130 PF05728 Uncharacterised protein family (UPF0227) VagYM4_09140 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_09170 PF03461 TRCF domain VagYM4_09170 PF17757 UvrB interaction domain VagYM4_09170 PF00270 DEAD/DEAH box helicase VagYM4_09170 PF00271 Helicase conserved C-terminal domain VagYM4_09170 PF02559 CarD-like/TRCF domain VagYM4_09190 PF02687 FtsX-like permease family VagYM4_09190 PF12704 MacB-like periplasmic core domain VagYM4_09200 PF00005 ABC transporter VagYM4_09210 PF12704 MacB-like periplasmic core domain VagYM4_09210 PF02687 FtsX-like permease family VagYM4_09230 PF00753 Metallo-beta-lactamase superfamily VagYM4_09230 PF13567 Domain of unknown function (DUF4131) VagYM4_09230 PF03772 Competence protein VagYM4_09240 PF00664 ABC transporter transmembrane region VagYM4_09240 PF00005 ABC transporter VagYM4_09250 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VagYM4_09260 PF03966 Trm112p-like protein VagYM4_09270 PF02348 Cytidylyltransferase VagYM4_09280 PF04293 SpoVR like protein VagYM4_09290 PF04285 Protein of unknown function (DUF444) VagYM4_09300 PF06798 PrkA serine protein kinase C-terminal domain VagYM4_09300 PF08298 PrkA AAA domain VagYM4_09310 PF03887 YfbU domain VagYM4_09330 PF04055 Radical SAM superfamily VagYM4_09350 PF02901 Pyruvate formate lyase-like VagYM4_09350 PF01228 Glycine radical VagYM4_09380 PF00005 ABC transporter VagYM4_09390 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_09400 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_09410 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_09430 PF03372 Endonuclease/Exonuclease/phosphatase family VagYM4_09440 PF10689 Protein of unknown function (DUF2496) VagYM4_09450 PF07445 Primosomal replication protein priC VagYM4_09460 PF01925 Sulfite exporter TauE/SafE VagYM4_09470 PF13307 Helicase C-terminal domain VagYM4_09470 PF06733 DEAD_2 VagYM4_09490 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VagYM4_09500 PF00849 RNA pseudouridylate synthase VagYM4_09510 PF03971 Monomeric isocitrate dehydrogenase VagYM4_09520 PF00313 'Cold-shock' DNA-binding domain VagYM4_09530 PF02617 ATP-dependent Clp protease adaptor protein ClpS VagYM4_09540 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_09540 PF07724 AAA domain (Cdc48 subfamily) VagYM4_09540 PF17871 AAA lid domain VagYM4_09540 PF02861 Clp amino terminal domain, pathogenicity island component VagYM4_09540 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM4_09550 PF01176 Translation initiation factor 1A / IF-1 VagYM4_09560 PF04376 Arginine-tRNA-protein transferase, N terminus VagYM4_09560 PF04377 Arginine-tRNA-protein transferase, C terminus VagYM4_09570 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VagYM4_09590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VagYM4_09600 PF10692 Protein of unknown function (DUF2498) VagYM4_09610 PF08272 Topoisomerase I zinc-ribbon-like VagYM4_09610 PF01131 DNA topoisomerase VagYM4_09610 PF01751 Toprim domain VagYM4_09610 PF01396 Topoisomerase DNA binding C4 zinc finger VagYM4_09620 PF00483 Nucleotidyl transferase VagYM4_09630 PF00534 Glycosyl transferases group 1 VagYM4_09630 PF08323 Starch synthase catalytic domain VagYM4_09670 PF04993 TfoX N-terminal domain VagYM4_09670 PF04994 TfoX C-terminal domain VagYM4_09680 PF00356 Bacterial regulatory proteins, lacI family VagYM4_09690 PF02613 Nitrate reductase delta subunit VagYM4_09700 PF00486 Transcriptional regulatory protein, C terminal VagYM4_09700 PF00072 Response regulator receiver domain VagYM4_09710 PF02698 DUF218 domain VagYM4_09720 PF13847 Methyltransferase domain VagYM4_09730 PF03882 MukF winged-helix domain VagYM4_09730 PF17193 MukF C-terminal domain VagYM4_09730 PF17192 MukF middle domain VagYM4_09740 PF04288 MukE-like family VagYM4_09750 PF16330 MukB hinge domain VagYM4_09750 PF04310 MukB N-terminal VagYM4_09790 PF18030 RimK PreATP-grasp domain VagYM4_09790 PF08443 RimK-like ATP-grasp domain VagYM4_09800 PF08003 Protein of unknown function (DUF1698) VagYM4_09810 PF13649 Methyltransferase domain VagYM4_09820 PF01904 Protein of unknown function DUF72 VagYM4_09830 PF02938 GAD domain VagYM4_09830 PF00152 tRNA synthetases class II (D, K and N) VagYM4_09830 PF01336 OB-fold nucleic acid binding domain VagYM4_09840 PF01709 Transcriptional regulator VagYM4_09850 PF02075 Crossover junction endodeoxyribonuclease RuvC VagYM4_09860 PF01330 RuvA N terminal domain VagYM4_09860 PF07499 RuvA, C-terminal domain VagYM4_09870 PF05491 RuvB C-terminal winged helix domain VagYM4_09870 PF17864 RuvB AAA lid domain VagYM4_09870 PF05496 Holliday junction DNA helicase RuvB P-loop domain VagYM4_09880 PF01654 Cytochrome bd terminal oxidase subunit I VagYM4_09890 PF02322 Cytochrome bd terminal oxidase subunit II VagYM4_09900 PF08173 Membrane bound YbgT-like protein VagYM4_09920 PF03061 Thioesterase superfamily VagYM4_09930 PF01618 MotA/TolQ/ExbB proton channel family VagYM4_09940 PF02472 Biopolymer transport protein ExbD/TolR VagYM4_09960 PF07676 WD40-like Beta Propeller Repeat VagYM4_09960 PF04052 TolB amino-terminal domain VagYM4_09970 PF00691 OmpA family VagYM4_09980 PF13174 Tetratricopeptide repeat VagYM4_09980 PF16331 TolA binding protein trimerisation VagYM4_09990 PF02445 Quinolinate synthetase A protein VagYM4_10010 PF03994 Domain of Unknown Function (DUF350) VagYM4_10030 PF03738 Glutathionylspermidine synthase preATP-grasp VagYM4_10050 PF00072 Response regulator receiver domain VagYM4_10050 PF09308 LuxQ, periplasmic VagYM4_10050 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_10050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_10060 PF06610 L-alanine exporter VagYM4_10070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_10070 PF00672 HAMP domain VagYM4_10080 PF00529 HlyD membrane-fusion protein of T1SS VagYM4_10080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_10090 PF00873 AcrB/AcrD/AcrF family VagYM4_10120 PF00579 tRNA synthetases class I (W and Y) VagYM4_10140 PF03372 Endonuclease/Exonuclease/phosphatase family VagYM4_10160 PF12729 Four helix bundle sensory module for signal transduction VagYM4_10160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_10160 PF00672 HAMP domain VagYM4_10170 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VagYM4_10190 PF03466 LysR substrate binding domain VagYM4_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_10210 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VagYM4_10210 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VagYM4_10220 PF01037 Lrp/AsnC ligand binding domain VagYM4_10230 PF09397 Ftsk gamma domain VagYM4_10230 PF17854 FtsK alpha domain VagYM4_10230 PF01580 FtsK/SpoIIIE family VagYM4_10230 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VagYM4_10240 PF03548 Outer membrane lipoprotein carrier protein LolA VagYM4_10250 PF16193 AAA C-terminal domain VagYM4_10250 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_10250 PF12002 MgsA AAA+ ATPase C terminal VagYM4_10260 PF02403 Seryl-tRNA synthetase N-terminal domain VagYM4_10260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VagYM4_10290 PF00202 Aminotransferase class-III VagYM4_10300 PF04055 Radical SAM superfamily VagYM4_10300 PF06968 Biotin and Thiamin Synthesis associated domain VagYM4_10310 PF00155 Aminotransferase class I and II VagYM4_10320 PF12697 Alpha/beta hydrolase family VagYM4_10320 PF08241 Methyltransferase domain VagYM4_10350 PF01435 Peptidase family M48 VagYM4_10380 PF00106 short chain dehydrogenase VagYM4_10430 PF16036 Chalcone isomerase-like VagYM4_10450 PF08328 Adenylosuccinate lyase C-terminal VagYM4_10450 PF00206 Lyase VagYM4_10460 PF04356 Protein of unknown function (DUF489) VagYM4_10490 PF00294 pfkB family carbohydrate kinase VagYM4_10500 PF00816 H-NS histone family VagYM4_10510 PF03553 Na+/H+ antiporter family VagYM4_10520 PF00158 Sigma-54 interaction domain VagYM4_10520 PF00072 Response regulator receiver domain VagYM4_10520 PF02954 Bacterial regulatory protein, Fis family VagYM4_10530 PF01634 ATP phosphoribosyltransferase VagYM4_10530 PF08029 HisG, C-terminal domain VagYM4_10540 PF00815 Histidinol dehydrogenase VagYM4_10550 PF00155 Aminotransferase class I and II VagYM4_10560 PF00475 Imidazoleglycerol-phosphate dehydratase VagYM4_10560 PF08645 Polynucleotide kinase 3 phosphatase VagYM4_10570 PF00117 Glutamine amidotransferase class-I VagYM4_10580 PF00977 Histidine biosynthesis protein VagYM4_10590 PF00977 Histidine biosynthesis protein VagYM4_10600 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VagYM4_10600 PF01502 Phosphoribosyl-AMP cyclohydrolase VagYM4_10630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_10630 PF00529 HlyD membrane-fusion protein of T1SS VagYM4_10640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_10640 PF03466 LysR substrate binding domain VagYM4_10680 PF00672 HAMP domain VagYM4_10680 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_10680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_10690 PF00072 Response regulator receiver domain VagYM4_10690 PF00486 Transcriptional regulatory protein, C terminal VagYM4_10700 PF00672 HAMP domain VagYM4_10700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_10730 PF04055 Radical SAM superfamily VagYM4_10730 PF11842 Domain of unknown function (DUF3362) VagYM4_10730 PF08497 Radical SAM N-terminal VagYM4_10740 PF08448 PAS fold VagYM4_10740 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_10740 PF08447 PAS fold VagYM4_10740 PF00563 EAL domain VagYM4_10770 PF03466 LysR substrate binding domain VagYM4_10770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_10780 PF08267 Cobalamin-independent synthase, N-terminal domain VagYM4_10780 PF01717 Cobalamin-independent synthase, Catalytic domain VagYM4_10800 PF03795 YCII-related domain VagYM4_10810 PF03061 Thioesterase superfamily VagYM4_10820 PF04279 Intracellular septation protein A VagYM4_10840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_10840 PF00072 Response regulator receiver domain VagYM4_10850 PF17327 Acyl homoserine lactone synthase VagYM4_10860 PF00375 Sodium:dicarboxylate symporter family VagYM4_10870 PF13193 AMP-binding enzyme C-terminal domain VagYM4_10870 PF00501 AMP-binding enzyme VagYM4_10880 PF00027 Cyclic nucleotide-binding domain VagYM4_10880 PF13545 Crp-like helix-turn-helix domain VagYM4_10890 PF00290 Tryptophan synthase alpha chain VagYM4_10900 PF00291 Pyridoxal-phosphate dependent enzyme VagYM4_10910 PF00218 Indole-3-glycerol phosphate synthase VagYM4_10910 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VagYM4_10920 PF00591 Glycosyl transferase family, a/b domain VagYM4_10920 PF02885 Glycosyl transferase family, helical bundle domain VagYM4_10930 PF00117 Glutamine amidotransferase class-I VagYM4_10940 PF00425 chorismate binding enzyme VagYM4_10940 PF04715 Anthranilate synthase component I, N terminal region VagYM4_10950 PF08056 Tryptophan operon leader peptide VagYM4_10960 PF02811 PHP domain VagYM4_10970 PF01300 Telomere recombination VagYM4_11000 PF00849 RNA pseudouridylate synthase VagYM4_11000 PF01479 S4 domain VagYM4_11010 PF04269 Protein of unknown function, DUF440 VagYM4_11020 PF09285 Elongation factor P, C-terminal VagYM4_11020 PF08207 Elongation factor P (EF-P) KOW-like domain VagYM4_11020 PF01132 Elongation factor P (EF-P) OB domain VagYM4_11040 PF03104 DNA polymerase family B, exonuclease domain VagYM4_11040 PF00136 DNA polymerase family B VagYM4_11050 PF00072 Response regulator receiver domain VagYM4_11050 PF00196 Bacterial regulatory proteins, luxR family VagYM4_11060 PF08459 UvrC Helix-hairpin-helix N-terminal VagYM4_11060 PF02151 UvrB/uvrC motif VagYM4_11060 PF01541 GIY-YIG catalytic domain VagYM4_11070 PF01066 CDP-alcohol phosphatidyltransferase VagYM4_11080 PF00202 Aminotransferase class-III VagYM4_11090 PF03435 Saccharopine dehydrogenase NADP binding domain VagYM4_11090 PF16653 Saccharopine dehydrogenase C-terminal domain VagYM4_11100 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VagYM4_11130 PF00994 Probable molybdopterin binding domain VagYM4_11150 PF00268 Ribonucleotide reductase, small chain VagYM4_11160 PF03477 ATP cone domain VagYM4_11160 PF00317 Ribonucleotide reductase, all-alpha domain VagYM4_11160 PF02867 Ribonucleotide reductase, barrel domain VagYM4_11190 PF00521 DNA gyrase/topoisomerase IV, subunit A VagYM4_11190 PF03989 DNA gyrase C-terminal domain, beta-propeller VagYM4_11220 PF02335 Cytochrome c552 VagYM4_11240 PF13247 4Fe-4S dicluster domain VagYM4_11250 PF03916 Polysulphide reductase, NrfD VagYM4_11260 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VagYM4_11260 PF01578 Cytochrome C assembly protein VagYM4_11270 PF08534 Redoxin VagYM4_11280 PF03918 Cytochrome C biogenesis protein VagYM4_11300 PF00925 GTP cyclohydrolase II VagYM4_11350 PF01471 Putative peptidoglycan binding domain VagYM4_11350 PF03734 L,D-transpeptidase catalytic domain VagYM4_11360 PF05951 Bacterial protein of unknown function (DUF882) VagYM4_11370 PF00753 Metallo-beta-lactamase superfamily VagYM4_11400 PF03480 Bacterial extracellular solute-binding protein, family 7 VagYM4_11420 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VagYM4_11430 PF07730 Histidine kinase VagYM4_11430 PF17200 Single Cache domain 2 VagYM4_11440 PF00196 Bacterial regulatory proteins, luxR family VagYM4_11440 PF00072 Response regulator receiver domain VagYM4_11460 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM4_11470 PF00672 HAMP domain VagYM4_11470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_11510 PF00155 Aminotransferase class I and II VagYM4_11540 PF00392 Bacterial regulatory proteins, gntR family VagYM4_11540 PF00155 Aminotransferase class I and II VagYM4_11560 PF00152 tRNA synthetases class II (D, K and N) VagYM4_11560 PF01336 OB-fold nucleic acid binding domain VagYM4_11570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_11570 PF00672 HAMP domain VagYM4_11570 PF17200 Single Cache domain 2 VagYM4_11590 PF01242 6-pyruvoyl tetrahydropterin synthase VagYM4_11610 PF00563 EAL domain VagYM4_11610 PF04940 Sensors of blue-light using FAD VagYM4_11620 PF03315 Serine dehydratase beta chain VagYM4_11620 PF03313 Serine dehydratase alpha chain VagYM4_11630 PF03222 Tryptophan/tyrosine permease family VagYM4_11640 PF00293 NUDIX domain VagYM4_11660 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_11660 PF09308 LuxQ, periplasmic VagYM4_11660 PF00072 Response regulator receiver domain VagYM4_11660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_11670 PF00425 chorismate binding enzyme VagYM4_11670 PF04715 Anthranilate synthase component I, N terminal region VagYM4_11700 PF04317 YcjX-like family, DUF463 VagYM4_11710 PF05128 Domain of unknown function (DUF697) VagYM4_11720 PF18024 Helix-turn-helix domain VagYM4_11720 PF00158 Sigma-54 interaction domain VagYM4_11730 PF13302 Acetyltransferase (GNAT) domain VagYM4_11760 PF13495 Phage integrase, N-terminal SAM-like domain VagYM4_11760 PF00589 Phage integrase family VagYM4_12160 PF00665 Integrase core domain VagYM4_12170 PF01527 Transposase VagYM4_12180 PF07244 Surface antigen variable number repeat VagYM4_12180 PF01103 Surface antigen VagYM4_12180 PF17243 POTRA domain TamA domain 1 VagYM4_12190 PF13091 PLD-like domain VagYM4_12200 PF00135 Carboxylesterase family VagYM4_12250 PF13533 Biotin-lipoyl like VagYM4_12270 PF02080 TrkA-C domain VagYM4_12270 PF06826 Predicted Permease Membrane Region VagYM4_12280 PF00155 Aminotransferase class I and II VagYM4_12290 PF08543 Phosphomethylpyrimidine kinase VagYM4_12320 PF03466 LysR substrate binding domain VagYM4_12320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_12380 PF12462 DNA helicase IV / RNA helicase N terminal VagYM4_12380 PF00580 UvrD/REP helicase N-terminal domain VagYM4_12380 PF13361 UvrD-like helicase C-terminal domain VagYM4_12390 PF00665 Integrase core domain VagYM4_12410 PF03981 Ubiquinol-cytochrome C chaperone VagYM4_12410 PF13099 Domain of unknown function (DUF3944) VagYM4_12480 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VagYM4_12490 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VagYM4_12560 PF13533 Biotin-lipoyl like VagYM4_12590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_12620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_12620 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VagYM4_12620 PF00989 PAS fold VagYM4_12620 PF17203 Single cache domain 3 VagYM4_12630 PF12431 Transcriptional regulator VagYM4_12630 PF00072 Response regulator receiver domain VagYM4_12640 PF00593 TonB dependent receptor VagYM4_12640 PF07715 TonB-dependent Receptor Plug Domain VagYM4_12650 PF12833 Helix-turn-helix domain VagYM4_12660 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VagYM4_12660 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VagYM4_12670 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VagYM4_12680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VagYM4_12680 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VagYM4_12710 PF02954 Bacterial regulatory protein, Fis family VagYM4_12710 PF00158 Sigma-54 interaction domain VagYM4_12710 PF01590 GAF domain VagYM4_12720 PF00171 Aldehyde dehydrogenase family VagYM4_12760 PF12833 Helix-turn-helix domain VagYM4_12790 PF00263 Bacterial type II and III secretion system protein VagYM4_12790 PF03958 Bacterial type II/III secretion system short domain VagYM4_12800 PF16697 Inner membrane component of T3SS, cytoplasmic domain VagYM4_12800 PF16693 Inner membrane component of T3SS, periplasmic domain VagYM4_12820 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VagYM4_12830 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VagYM4_12850 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VagYM4_12860 PF01514 Secretory protein of YscJ/FliF family VagYM4_12880 PF02108 Flagellar assembly protein FliH VagYM4_12900 PF02661 Fic/DOC family VagYM4_12980 PF13533 Biotin-lipoyl like VagYM4_13000 PF00440 Bacterial regulatory proteins, tetR family VagYM4_13000 PF08360 QacR-like protein, C-terminal region VagYM4_13010 PF01312 FlhB HrpN YscU SpaS Family VagYM4_13020 PF01311 Bacterial export proteins, family 1 VagYM4_13030 PF01313 Bacterial export proteins, family 3 VagYM4_13040 PF00813 FliP family VagYM4_13050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VagYM4_13080 PF02874 ATP synthase alpha/beta family, beta-barrel domain VagYM4_13080 PF18269 T3SS EscN ATPase C-terminal domain VagYM4_13080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM4_13100 PF09059 TyeA VagYM4_13140 PF00771 FHIPEP family VagYM4_13150 PF09621 Type III secretion system regulator (LcrR) VagYM4_13170 PF04792 V antigen (LcrV) protein VagYM4_13180 PF07720 Tetratricopeptide repeat VagYM4_13200 PF05844 YopD protein VagYM4_13220 PF16868 NMT1-like family VagYM4_13230 PF01925 Sulfite exporter TauE/SafE VagYM4_13250 PF01970 Tripartite tricarboxylate transporter TctA family VagYM4_13310 PF00285 Citrate synthase, C-terminal domain VagYM4_13320 PF00330 Aconitase family (aconitate hydratase) VagYM4_13320 PF00694 Aconitase C-terminal domain VagYM4_13330 PF04303 PrpF protein VagYM4_13340 PF13193 AMP-binding enzyme C-terminal domain VagYM4_13340 PF16177 Acetyl-coenzyme A synthetase N-terminus VagYM4_13340 PF00501 AMP-binding enzyme VagYM4_13360 PF00089 Trypsin VagYM4_13390 PF04055 Radical SAM superfamily VagYM4_13400 PF06508 Queuosine biosynthesis protein QueC VagYM4_13410 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_13410 PF07694 5TMR of 5TMR-LYT VagYM4_13430 PF05736 OprF membrane domain VagYM4_13430 PF00691 OmpA family VagYM4_13460 PF00691 OmpA family VagYM4_13460 PF05736 OprF membrane domain VagYM4_13490 PF10672 S-adenosylmethionine-dependent methyltransferase VagYM4_13490 PF17785 PUA-like domain VagYM4_13500 PF00672 HAMP domain VagYM4_13500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_13500 PF02743 Cache domain VagYM4_13510 PF00708 Acylphosphatase VagYM4_13520 PF04358 DsrC like protein VagYM4_13540 PF01027 Inhibitor of apoptosis-promoting Bax1 VagYM4_13550 PF00005 ABC transporter VagYM4_13560 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_13570 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_13580 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_13590 PF10414 Sirohaem synthase dimerisation region VagYM4_13590 PF14824 Sirohaem biosynthesis protein central VagYM4_13590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM4_13600 PF04461 Protein of unknown function (DUF520) VagYM4_13610 PF00793 DAHP synthetase I family VagYM4_13650 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VagYM4_13650 PF01189 16S rRNA methyltransferase RsmB/F VagYM4_13650 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VagYM4_13660 PF02470 MlaD protein VagYM4_13670 PF04403 Paraquat-inducible protein A VagYM4_13680 PF00005 ABC transporter VagYM4_13680 PF00664 ABC transporter transmembrane region VagYM4_13690 PF13185 GAF domain VagYM4_13700 PF04352 ProQ/FINO family VagYM4_13700 PF17516 ProQ C-terminal domain VagYM4_13710 PF11818 C-terminal domain of tail specific protease (DUF3340) VagYM4_13710 PF00595 PDZ domain VagYM4_13710 PF03572 Peptidase family S41 VagYM4_13710 PF17804 Tail specific protease N-terminal domain VagYM4_13730 PF11940 Domain of unknown function (DUF3458) Ig-like fold VagYM4_13730 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VagYM4_13730 PF01433 Peptidase family M1 domain VagYM4_13750 PF05088 Bacterial NAD-glutamate dehydrogenase VagYM4_13760 PF01180 Dihydroorotate dehydrogenase VagYM4_13770 PF07126 Cell-division protein ZapC VagYM4_13780 PF10672 S-adenosylmethionine-dependent methyltransferase VagYM4_13780 PF02926 THUMP domain VagYM4_13780 PF01170 Putative RNA methylase family UPF0020 VagYM4_13820 PF04957 Ribosome modulation factor VagYM4_13830 PF07977 FabA-like domain VagYM4_13840 PF13654 AAA domain VagYM4_13840 PF05362 Lon protease (S16) C-terminal proteolytic domain VagYM4_13850 PF06303 MatP N-terminal domain VagYM4_13850 PF17414 MatP C-terminal ribbon-helix-helix domain VagYM4_13910 PF05840 Bacteriophage replication gene A protein (GPA) VagYM4_14120 PF00072 Response regulator receiver domain VagYM4_14120 PF09308 LuxQ, periplasmic VagYM4_14120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_14120 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_14150 PF00115 Cytochrome C and Quinol oxidase polypeptide I VagYM4_14180 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VagYM4_14180 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VagYM4_14200 PF00403 Heavy-metal-associated domain VagYM4_14230 PF00027 Cyclic nucleotide-binding domain VagYM4_14230 PF13545 Crp-like helix-turn-helix domain VagYM4_14240 PF00582 Universal stress protein family VagYM4_14250 PF01171 PP-loop family VagYM4_14290 PF08402 TOBE domain VagYM4_14290 PF00005 ABC transporter VagYM4_14300 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_14310 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_14320 PF13416 Bacterial extracellular solute-binding protein VagYM4_14330 PF13416 Bacterial extracellular solute-binding protein VagYM4_14340 PF02146 Sir2 family VagYM4_14360 PF00909 Ammonium Transporter Family VagYM4_14410 PF13247 4Fe-4S dicluster domain VagYM4_14420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM4_14420 PF00384 Molybdopterin oxidoreductase VagYM4_14420 PF01568 Molydopterin dinucleotide binding domain VagYM4_14440 PF02613 Nitrate reductase delta subunit VagYM4_14480 PF02634 FdhD/NarQ family VagYM4_14500 PF12848 ABC transporter VagYM4_14500 PF00005 ABC transporter VagYM4_14510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_14510 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_14520 PF02954 Bacterial regulatory protein, Fis family VagYM4_14520 PF00072 Response regulator receiver domain VagYM4_14520 PF00158 Sigma-54 interaction domain VagYM4_14530 PF12849 PBP superfamily domain VagYM4_14540 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_14550 PF08402 TOBE domain VagYM4_14550 PF00005 ABC transporter VagYM4_14560 PF12804 MobA-like NTP transferase domain VagYM4_14570 PF03453 MoeA N-terminal region (domain I and II) VagYM4_14570 PF00994 Probable molybdopterin binding domain VagYM4_14570 PF03454 MoeA C-terminal region (domain IV) VagYM4_14590 PF00480 ROK family VagYM4_14650 PF00672 HAMP domain VagYM4_14650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_14650 PF02743 Cache domain VagYM4_14660 PF00877 NlpC/P60 family VagYM4_14680 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_14680 PF05230 MASE2 domain VagYM4_14690 PF00072 Response regulator receiver domain VagYM4_14690 PF01339 CheB methylesterase VagYM4_14700 PF03881 Fructosamine kinase VagYM4_14720 PF00677 Lumazine binding domain VagYM4_14730 PF01554 MatE VagYM4_14750 PF14743 DNA ligase OB-like domain VagYM4_14750 PF01068 ATP dependent DNA ligase domain VagYM4_14760 PF01740 STAS domain VagYM4_14780 PF02563 Polysaccharide biosynthesis/export protein VagYM4_14780 PF10531 SLBB domain VagYM4_14810 PF02954 Bacterial regulatory protein, Fis family VagYM4_14810 PF00072 Response regulator receiver domain VagYM4_14810 PF00158 Sigma-54 interaction domain VagYM4_14820 PF00534 Glycosyl transferases group 1 VagYM4_14820 PF13439 Glycosyltransferase Family 4 VagYM4_14830 PF13439 Glycosyltransferase Family 4 VagYM4_14830 PF00534 Glycosyl transferases group 1 VagYM4_14890 PF00534 Glycosyl transferases group 1 VagYM4_14890 PF13439 Glycosyltransferase Family 4 VagYM4_14910 PF02397 Bacterial sugar transferase VagYM4_14930 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM4_14960 PF00270 DEAD/DEAH box helicase VagYM4_14960 PF00271 Helicase conserved C-terminal domain VagYM4_14960 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VagYM4_14960 PF04408 Helicase associated domain (HA2) VagYM4_14960 PF11898 Domain of unknown function (DUF3418) VagYM4_14970 PF02525 Flavodoxin-like fold VagYM4_15040 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_15060 PF00012 Hsp70 protein VagYM4_15070 PF00012 Hsp70 protein VagYM4_15110 PF07963 Prokaryotic N-terminal methylation motif VagYM4_15110 PF14245 Type IV pilin PilA VagYM4_15120 PF00005 ABC transporter VagYM4_15120 PF00664 ABC transporter transmembrane region VagYM4_15130 PF00664 ABC transporter transmembrane region VagYM4_15130 PF00005 ABC transporter VagYM4_15150 PF00593 TonB dependent receptor VagYM4_15150 PF07715 TonB-dependent Receptor Plug Domain VagYM4_15160 PF07715 TonB-dependent Receptor Plug Domain VagYM4_15160 PF00593 TonB dependent receptor VagYM4_15170 PF01032 FecCD transport family VagYM4_15180 PF01497 Periplasmic binding protein VagYM4_15190 PF00005 ABC transporter VagYM4_15220 PF03222 Tryptophan/tyrosine permease family VagYM4_15230 PF00465 Iron-containing alcohol dehydrogenase VagYM4_15240 PF01966 HD domain VagYM4_15260 PF03741 Integral membrane protein TerC family VagYM4_15280 PF04055 Radical SAM superfamily VagYM4_15290 PF11230 Protein of unknown function (DUF3029) VagYM4_15300 PF01810 LysE type translocator VagYM4_15310 PF11871 Domain of unknown function (DUF3391) VagYM4_15310 PF01966 HD domain VagYM4_15320 PF00563 EAL domain VagYM4_15320 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_15320 PF03707 Bacterial signalling protein N terminal repeat VagYM4_15330 PF00158 Sigma-54 interaction domain VagYM4_15330 PF00072 Response regulator receiver domain VagYM4_15330 PF02954 Bacterial regulatory protein, Fis family VagYM4_15340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_15340 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_15350 PF00939 Sodium:sulfate symporter transmembrane region VagYM4_15390 PF00072 Response regulator receiver domain VagYM4_15390 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_15400 PF03928 Haem-degrading VagYM4_15410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VagYM4_15410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VagYM4_15450 PF04055 Radical SAM superfamily VagYM4_15450 PF13186 Iron-sulfur cluster-binding domain VagYM4_15460 PF03781 Sulfatase-modifying factor enzyme 1 VagYM4_15490 PF00884 Sulfatase VagYM4_15500 PF13840 ACT domain VagYM4_15500 PF00696 Amino acid kinase family VagYM4_15510 PF06339 Ectoine synthase VagYM4_15520 PF00202 Aminotransferase class-III VagYM4_15530 PF00583 Acetyltransferase (GNAT) family VagYM4_15540 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM4_15570 PF00005 ABC transporter VagYM4_15570 PF00571 CBS domain VagYM4_15580 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_15590 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VagYM4_15610 PF00501 AMP-binding enzyme VagYM4_15650 PF00486 Transcriptional regulatory protein, C terminal VagYM4_15650 PF00072 Response regulator receiver domain VagYM4_15660 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_15660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_15660 PF08521 Two-component sensor kinase N-terminal VagYM4_15670 PF00884 Sulfatase VagYM4_15680 PF00665 Integrase core domain VagYM4_15690 PF01527 Transposase VagYM4_15750 PF01235 Sodium:alanine symporter family VagYM4_15770 PF01810 LysE type translocator VagYM4_15780 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VagYM4_15830 PF13411 MerR HTH family regulatory protein VagYM4_15850 PF03193 RsgA GTPase VagYM4_15880 PF00717 Peptidase S24-like VagYM4_15890 PF11798 IMS family HHH motif VagYM4_15890 PF11799 impB/mucB/samB family C-terminal domain VagYM4_15890 PF00817 impB/mucB/samB family VagYM4_15890 PF13438 Domain of unknown function (DUF4113) VagYM4_15900 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VagYM4_15900 PF01926 50S ribosome-binding GTPase VagYM4_15910 PF01926 50S ribosome-binding GTPase VagYM4_15930 PF01926 50S ribosome-binding GTPase VagYM4_15930 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VagYM4_16000 PF02601 Exonuclease VII, large subunit VagYM4_16000 PF13742 OB-fold nucleic acid binding domain VagYM4_16050 PF00005 ABC transporter VagYM4_16100 PF00271 Helicase conserved C-terminal domain VagYM4_16100 PF00176 SNF2 family N-terminal domain VagYM4_16100 PF12419 SNF2 Helicase protein VagYM4_16120 PF02223 Thymidylate kinase VagYM4_16190 PF13408 Recombinase zinc beta ribbon domain VagYM4_16190 PF00239 Resolvase, N terminal domain VagYM4_16190 PF07508 Recombinase VagYM4_16200 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VagYM4_16210 PF03279 Bacterial lipid A biosynthesis acyltransferase VagYM4_16230 PF13520 Amino acid permease VagYM4_16240 PF00893 Small Multidrug Resistance protein VagYM4_16260 PF04204 Homoserine O-succinyltransferase VagYM4_16290 PF00563 EAL domain VagYM4_16290 PF03707 Bacterial signalling protein N terminal repeat VagYM4_16290 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_16300 PF00672 HAMP domain VagYM4_16300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_16300 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_16300 PF00072 Response regulator receiver domain VagYM4_16300 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VagYM4_16300 PF01627 Hpt domain VagYM4_16330 PF12464 Maltose acetyltransferase VagYM4_16330 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM4_16360 PF04237 YjbR VagYM4_16370 PF01047 MarR family VagYM4_16390 PF00563 EAL domain VagYM4_16390 PF12792 CSS motif domain associated with EAL VagYM4_16440 PF02798 Glutathione S-transferase, N-terminal domain VagYM4_16440 PF14497 Glutathione S-transferase, C-terminal domain VagYM4_16460 PF04209 homogentisate 1,2-dioxygenase VagYM4_16470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM4_16480 PF07687 Peptidase dimerisation domain VagYM4_16480 PF01546 Peptidase family M20/M25/M40 VagYM4_16490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_16500 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_16510 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM4_16510 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_16520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_16520 PF00005 ABC transporter VagYM4_16530 PF00005 ABC transporter VagYM4_16530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_16550 PF01752 Collagenase VagYM4_16550 PF08453 Peptidase family M9 N-terminal VagYM4_16580 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_16590 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_16600 PF08402 TOBE domain VagYM4_16600 PF00005 ABC transporter VagYM4_16610 PF00701 Dihydrodipicolinate synthetase family VagYM4_16620 PF02423 Ornithine cyclodeaminase/mu-crystallin family VagYM4_16640 PF01266 FAD dependent oxidoreductase VagYM4_16640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_16650 PF05544 Proline racemase VagYM4_16660 PF00171 Aldehyde dehydrogenase family VagYM4_16670 PF00392 Bacterial regulatory proteins, gntR family VagYM4_16710 PF05971 RNA methyltransferase VagYM4_16720 PF01863 Protein of unknown function DUF45 VagYM4_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_16740 PF03466 LysR substrate binding domain VagYM4_16780 PF00005 ABC transporter VagYM4_16790 PF01032 FecCD transport family VagYM4_16800 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VagYM4_16830 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VagYM4_16840 PF02654 Cobalamin-5-phosphate synthase VagYM4_16850 PF02277 Phosphoribosyltransferase VagYM4_16860 PF13460 NAD(P)H-binding VagYM4_16880 PF08411 Exonuclease C-terminal VagYM4_16880 PF00929 Exonuclease VagYM4_16890 PF03788 LrgA family VagYM4_16900 PF04172 LrgB-like family VagYM4_16910 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM4_16910 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM4_16920 PF02222 ATP-grasp domain VagYM4_16930 PF05724 Thiopurine S-methyltransferase (TPMT) VagYM4_16950 PF00216 Bacterial DNA-binding protein VagYM4_16970 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VagYM4_16970 PF01588 Putative tRNA binding domain VagYM4_16970 PF03147 Ferredoxin-fold anticodon binding domain VagYM4_16970 PF03484 tRNA synthetase B5 domain VagYM4_16970 PF03483 B3/4 domain VagYM4_16980 PF01409 tRNA synthetases class II core domain (F) VagYM4_16980 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VagYM4_17040 PF01906 Putative heavy-metal-binding VagYM4_17050 PF00453 Ribosomal protein L20 VagYM4_17060 PF01632 Ribosomal protein L35 VagYM4_17070 PF05198 Translation initiation factor IF-3, N-terminal domain VagYM4_17070 PF00707 Translation initiation factor IF-3, C-terminal domain VagYM4_17080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VagYM4_17080 PF02824 TGS domain VagYM4_17080 PF03129 Anticodon binding domain VagYM4_17080 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VagYM4_17110 PF07702 UTRA domain VagYM4_17110 PF00392 Bacterial regulatory proteins, gntR family VagYM4_17120 PF01979 Amidohydrolase family VagYM4_17130 PF00491 Arginase family VagYM4_17140 PF01175 Urocanase Rossmann-like domain VagYM4_17140 PF17391 Urocanase N-terminal domain VagYM4_17140 PF17392 Urocanase C-terminal domain VagYM4_17150 PF00221 Aromatic amino acid lyase VagYM4_17170 PF04191 Phospholipid methyltransferase VagYM4_17180 PF13183 4Fe-4S dicluster domain VagYM4_17180 PF02913 FAD linked oxidases, C-terminal domain VagYM4_17180 PF01565 FAD binding domain VagYM4_17210 PF00691 OmpA family VagYM4_17210 PF05736 OprF membrane domain VagYM4_17250 PF01259 SAICAR synthetase VagYM4_17260 PF09423 PhoD-like phosphatase VagYM4_17260 PF16655 PhoD-like phosphatase, N-terminal domain VagYM4_17280 PF08482 ATP-dependent helicase C-terminal VagYM4_17280 PF04408 Helicase associated domain (HA2) VagYM4_17280 PF00271 Helicase conserved C-terminal domain VagYM4_17280 PF00270 DEAD/DEAH box helicase VagYM4_17290 PF00390 Malic enzyme, N-terminal domain VagYM4_17290 PF03949 Malic enzyme, NAD binding domain VagYM4_17300 PF02698 DUF218 domain VagYM4_17310 PF00939 Sodium:sulfate symporter transmembrane region VagYM4_17320 PF00939 Sodium:sulfate symporter transmembrane region VagYM4_17340 PF00072 Response regulator receiver domain VagYM4_17340 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_17360 PF00266 Aminotransferase class-V VagYM4_17380 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_17390 PF00664 ABC transporter transmembrane region VagYM4_17390 PF00005 ABC transporter VagYM4_17400 PF00664 ABC transporter transmembrane region VagYM4_17400 PF00005 ABC transporter VagYM4_17420 PF00691 OmpA family VagYM4_17450 PF00577 Outer membrane usher protein VagYM4_17450 PF13954 PapC N-terminal domain VagYM4_17450 PF13953 PapC C-terminal domain VagYM4_17460 PF02753 Pili assembly chaperone PapD, C-terminal domain VagYM4_17460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain VagYM4_17470 PF00419 Fimbrial protein VagYM4_17480 PF00266 Aminotransferase class-V VagYM4_17500 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_17500 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_17500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_17540 PF04994 TfoX C-terminal domain VagYM4_17540 PF04993 TfoX N-terminal domain VagYM4_17560 PF03956 Lysine exporter LysO VagYM4_17580 PF00282 Pyridoxal-dependent decarboxylase conserved domain VagYM4_17590 PF01380 SIS domain VagYM4_17590 PF01418 Helix-turn-helix domain, rpiR family VagYM4_17600 PF00465 Iron-containing alcohol dehydrogenase VagYM4_17610 PF00462 Glutaredoxin VagYM4_17620 PF02080 TrkA-C domain VagYM4_17620 PF06826 Predicted Permease Membrane Region VagYM4_17630 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VagYM4_17630 PF12241 Trans-2-enoyl-CoA reductase catalytic region VagYM4_17630 PF07055 Enoyl reductase FAD binding domain VagYM4_17640 PF09317 Domain of unknown function (DUF1974) VagYM4_17640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM4_17640 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM4_17640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM4_17650 PF16295 Tetracyclin repressor-like, C-terminal domain VagYM4_17650 PF00440 Bacterial regulatory proteins, tetR family VagYM4_17660 PF06965 Na+/H+ antiporter 1 VagYM4_17690 PF00005 ABC transporter VagYM4_17700 PF01554 MatE VagYM4_17710 PF11066 Protein of unknown function (DUF2867) VagYM4_17710 PF13460 NAD(P)H-binding VagYM4_17720 PF03264 NapC/NirT cytochrome c family, N-terminal region VagYM4_17750 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VagYM4_17780 PF07690 Major Facilitator Superfamily VagYM4_17790 PF00849 RNA pseudouridylate synthase VagYM4_17790 PF01479 S4 domain VagYM4_17800 PF00271 Helicase conserved C-terminal domain VagYM4_17800 PF04851 Type III restriction enzyme, res subunit VagYM4_17820 PF00486 Transcriptional regulatory protein, C terminal VagYM4_17820 PF00072 Response regulator receiver domain VagYM4_17830 PF00672 HAMP domain VagYM4_17830 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_17830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_17840 PF01386 Ribosomal L25p family VagYM4_17850 PF00583 Acetyltransferase (GNAT) family VagYM4_17860 PF00149 Calcineurin-like phosphoesterase VagYM4_17860 PF02872 5'-nucleotidase, C-terminal domain VagYM4_17890 PF13416 Bacterial extracellular solute-binding protein VagYM4_17900 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_17910 PF00005 ABC transporter VagYM4_17920 PF01066 CDP-alcohol phosphatidyltransferase VagYM4_17940 PF00158 Sigma-54 interaction domain VagYM4_17940 PF01590 GAF domain VagYM4_17950 PF03063 Prismane/CO dehydrogenase family VagYM4_17960 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM4_17960 PF00970 Oxidoreductase FAD-binding domain VagYM4_17960 PF00175 Oxidoreductase NAD-binding domain VagYM4_17980 PF00849 RNA pseudouridylate synthase VagYM4_17990 PF00209 Sodium:neurotransmitter symporter family VagYM4_18000 PF00209 Sodium:neurotransmitter symporter family VagYM4_18010 PF13091 PLD-like domain VagYM4_18010 PF13396 Phospholipase_D-nuclease N-terminal VagYM4_18020 PF01053 Cys/Met metabolism PLP-dependent enzyme VagYM4_18030 PF00561 alpha/beta hydrolase fold VagYM4_18040 PF03280 Proteobacterial lipase chaperone protein VagYM4_18050 PF03352 Methyladenine glycosylase VagYM4_18060 PF00873 AcrB/AcrD/AcrF family VagYM4_18070 PF13533 Biotin-lipoyl like VagYM4_18090 PF04024 PspC domain VagYM4_18100 PF06667 Phage shock protein B VagYM4_18110 PF04012 PspA/IM30 family VagYM4_18120 PF00158 Sigma-54 interaction domain VagYM4_18120 PF02954 Bacterial regulatory protein, Fis family VagYM4_18130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_18140 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_18150 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_18150 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM4_18160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_18160 PF00005 ABC transporter VagYM4_18170 PF00005 ABC transporter VagYM4_18190 PF02833 DHHA2 domain VagYM4_18190 PF01368 DHH family VagYM4_18210 PF16874 Glycosyl hydrolase family 36 C-terminal domain VagYM4_18210 PF16875 Glycosyl hydrolase family 36 N-terminal domain VagYM4_18220 PF01568 Molydopterin dinucleotide binding domain VagYM4_18220 PF18364 Molybdopterin oxidoreductase N-terminal domain VagYM4_18220 PF00384 Molybdopterin oxidoreductase VagYM4_18230 PF03264 NapC/NirT cytochrome c family, N-terminal region VagYM4_18240 PF06796 Periplasmic nitrate reductase protein NapE VagYM4_18250 PF03649 Uncharacterised protein family (UPF0014) VagYM4_18270 PF01226 Formate/nitrite transporter VagYM4_18320 PF02698 DUF218 domain VagYM4_18330 PF00265 Thymidine kinase VagYM4_18340 PF09190 DALR domain VagYM4_18340 PF01406 tRNA synthetases class I (C) catalytic domain VagYM4_18350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VagYM4_18360 PF00149 Calcineurin-like phosphoesterase VagYM4_18370 PF00563 EAL domain VagYM4_18370 PF08668 HDOD domain VagYM4_18380 PF02810 SEC-C motif VagYM4_18400 PF08267 Cobalamin-independent synthase, N-terminal domain VagYM4_18400 PF01717 Cobalamin-independent synthase, Catalytic domain VagYM4_18440 PF00005 ABC transporter VagYM4_18440 PF12704 MacB-like periplasmic core domain VagYM4_18440 PF02687 FtsX-like permease family VagYM4_18450 PF12704 MacB-like periplasmic core domain VagYM4_18450 PF02687 FtsX-like permease family VagYM4_18450 PF00005 ABC transporter VagYM4_18460 PF00005 ABC transporter VagYM4_18460 PF02687 FtsX-like permease family VagYM4_18460 PF12704 MacB-like periplasmic core domain VagYM4_18480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_18510 PF01938 TRAM domain VagYM4_18510 PF05958 tRNA (Uracil-5-)-methyltransferase VagYM4_18530 PF00085 Thioredoxin VagYM4_18540 PF11412 Disulphide bond corrector protein DsbC VagYM4_18540 PF02683 Cytochrome C biogenesis protein transmembrane region VagYM4_18560 PF00072 Response regulator receiver domain VagYM4_18560 PF00196 Bacterial regulatory proteins, luxR family VagYM4_18570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_18570 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_18580 PF13247 4Fe-4S dicluster domain VagYM4_18590 PF03916 Polysulphide reductase, NrfD VagYM4_18600 PF00384 Molybdopterin oxidoreductase VagYM4_18600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM4_18600 PF01568 Molydopterin dinucleotide binding domain VagYM4_18610 PF00034 Cytochrome c VagYM4_18620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VagYM4_18630 PF04403 Paraquat-inducible protein A VagYM4_18640 PF02470 MlaD protein VagYM4_18670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_18680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VagYM4_18690 PF18073 Rubredoxin metal binding domain VagYM4_18700 PF06305 Lipopolysaccharide assembly protein A domain VagYM4_18710 PF00216 Bacterial DNA-binding protein VagYM4_18720 PF00575 S1 RNA binding domain VagYM4_18730 PF02224 Cytidylate kinase VagYM4_18740 PF08496 Peptidase family S49 N-terminal VagYM4_18740 PF01343 Peptidase family S49 VagYM4_18750 PF00106 short chain dehydrogenase VagYM4_18780 PF02811 PHP domain VagYM4_18780 PF14579 Helix-hairpin-helix motif VagYM4_18780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VagYM4_18780 PF07733 Bacterial DNA polymerase III alpha NTPase domain VagYM4_18780 PF01336 OB-fold nucleic acid binding domain VagYM4_18790 PF00072 Response regulator receiver domain VagYM4_18790 PF01584 CheW-like domain VagYM4_18800 PF00480 ROK family VagYM4_18810 PF02887 Pyruvate kinase, alpha/beta domain VagYM4_18810 PF00224 Pyruvate kinase, barrel domain VagYM4_18820 PF01734 Patatin-like phospholipase VagYM4_18850 PF00209 Sodium:neurotransmitter symporter family VagYM4_18880 PF02378 Phosphotransferase system, EIIC VagYM4_18880 PF00367 phosphotransferase system, EIIB VagYM4_18890 PF01026 TatD related DNase VagYM4_18900 PF09115 DNA polymerase III, delta subunit, C terminal VagYM4_18910 PF02223 Thymidylate kinase VagYM4_18920 PF02618 YceG-like family VagYM4_18930 PF01063 Amino-transferase class IV VagYM4_18940 PF02801 Beta-ketoacyl synthase, C-terminal domain VagYM4_18940 PF00109 Beta-ketoacyl synthase, N-terminal domain VagYM4_18950 PF00550 Phosphopantetheine attachment site VagYM4_18970 PF00698 Acyl transferase domain VagYM4_18980 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VagYM4_18980 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM4_18990 PF02504 Fatty acid synthesis protein VagYM4_19000 PF01783 Ribosomal L32p protein family VagYM4_19010 PF02620 Large ribosomal RNA subunit accumulation protein YceD VagYM4_19020 PF02545 Maf-like protein VagYM4_19030 PF00849 RNA pseudouridylate synthase VagYM4_19030 PF01479 S4 domain VagYM4_19040 PF10150 Ribonuclease E/G family VagYM4_19040 PF12111 Polyribonucleotide phosphorylase C terminal VagYM4_19040 PF00575 S1 RNA binding domain VagYM4_19050 PF01740 STAS domain VagYM4_19050 PF00916 Sulfate permease family VagYM4_19060 PF01451 Low molecular weight phosphotyrosine protein phosphatase VagYM4_19070 PF12557 Cob(I)alamin adenosyltransferase N terminal VagYM4_19070 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VagYM4_19090 PF00485 Phosphoribulokinase / Uridine kinase family VagYM4_19100 PF10609 NUBPL iron-transfer P-loop NTPase VagYM4_19110 PF09334 tRNA synthetases class I (M) VagYM4_19110 PF01588 Putative tRNA binding domain VagYM4_19140 PF00392 Bacterial regulatory proteins, gntR family VagYM4_19140 PF07840 FadR C-terminal domain VagYM4_19150 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VagYM4_19160 PF02600 Disulfide bond formation protein DsbB VagYM4_19170 PF07516 SecA Wing and Scaffold domain VagYM4_19170 PF01043 SecA preprotein cross-linking domain VagYM4_19170 PF07517 SecA DEAD-like domain VagYM4_19170 PF02810 SEC-C motif VagYM4_19180 PF01207 Dihydrouridine synthase (Dus) VagYM4_19190 PF17158 Membrane-associated sensor, integral membrane domain VagYM4_19190 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_19200 PF02903 Alpha amylase, N-terminal ig-like domain VagYM4_19200 PF00128 Alpha amylase, catalytic domain VagYM4_19210 PF00005 ABC transporter VagYM4_19220 PF02653 Branched-chain amino acid transport system / permease component VagYM4_19240 PF04217 Protein of unknown function, DUF412 VagYM4_19250 PF00871 Acetokinase family VagYM4_19260 PF01515 Phosphate acetyl/butaryl transferase VagYM4_19260 PF07085 DRTGG domain VagYM4_19270 PF13194 Domain of unknown function (DUF4010) VagYM4_19290 PF13409 Glutathione S-transferase, N-terminal domain VagYM4_19300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_19300 PF00005 ABC transporter VagYM4_19310 PF00005 ABC transporter VagYM4_19310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_19320 PF12911 N-terminal TM domain of oligopeptide transport permease C VagYM4_19320 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_19330 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_19340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_19350 PF02391 MoaE protein VagYM4_19360 PF02597 ThiS family VagYM4_19370 PF01967 MoaC family VagYM4_19380 PF00994 Probable molybdopterin binding domain VagYM4_19390 PF06463 Molybdenum Cofactor Synthesis C VagYM4_19390 PF04055 Radical SAM superfamily VagYM4_19400 PF01933 Uncharacterised protein family UPF0052 VagYM4_19410 PF01627 Hpt domain VagYM4_19420 PF02954 Bacterial regulatory protein, Fis family VagYM4_19420 PF00072 Response regulator receiver domain VagYM4_19420 PF00158 Sigma-54 interaction domain VagYM4_19430 PF00271 Helicase conserved C-terminal domain VagYM4_19430 PF02151 UvrB/uvrC motif VagYM4_19430 PF12344 Ultra-violet resistance protein B VagYM4_19430 PF17757 UvrB interaction domain VagYM4_19430 PF04851 Type III restriction enzyme, res subunit VagYM4_19440 PF02508 Rnf-Nqr subunit, membrane protein VagYM4_19450 PF04060 Putative Fe-S cluster VagYM4_19460 PF13375 RnfC Barrel sandwich hybrid domain VagYM4_19460 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VagYM4_19460 PF10531 SLBB domain VagYM4_19460 PF12838 4Fe-4S dicluster domain VagYM4_19470 PF03116 NQR2, RnfD, RnfE family VagYM4_19480 PF04205 FMN-binding domain VagYM4_19490 PF02508 Rnf-Nqr subunit, membrane protein VagYM4_19500 PF10576 Iron-sulfur binding domain of endonuclease III VagYM4_19500 PF00633 Helix-hairpin-helix motif VagYM4_19500 PF00730 HhH-GPD superfamily base excision DNA repair protein VagYM4_19510 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM4_19520 PF10952 Protein of unknown function (DUF2753) VagYM4_19530 PF18393 MotY N-terminal domain VagYM4_19530 PF00691 OmpA family VagYM4_19550 PF00929 Exonuclease VagYM4_19560 PF13726 Na+-H+ antiporter family VagYM4_19560 PF03553 Na+/H+ antiporter family VagYM4_19580 PF00462 Glutaredoxin VagYM4_19590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VagYM4_19590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VagYM4_19620 PF00171 Aldehyde dehydrogenase family VagYM4_19620 PF00465 Iron-containing alcohol dehydrogenase VagYM4_19630 PF01914 MarC family integral membrane protein VagYM4_19640 PF00520 Ion transport protein VagYM4_19640 PF00027 Cyclic nucleotide-binding domain VagYM4_19650 PF01118 Semialdehyde dehydrogenase, NAD binding domain VagYM4_19650 PF02774 Semialdehyde dehydrogenase, dimerisation domain VagYM4_19660 PF03553 Na+/H+ antiporter family VagYM4_19690 PF04245 37-kD nucleoid-associated bacterial protein VagYM4_19700 PF07208 Protein of unknown function (DUF1414) VagYM4_19710 PF00884 Sulfatase VagYM4_19710 PF11893 Domain of unknown function (DUF3413) VagYM4_19720 PF00850 Histone deacetylase domain VagYM4_19730 PF00106 short chain dehydrogenase VagYM4_19750 PF01131 DNA topoisomerase VagYM4_19750 PF01751 Toprim domain VagYM4_19760 PF00881 Nitroreductase family VagYM4_19780 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_19780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM4_19790 PF01343 Peptidase family S49 VagYM4_19800 PF17763 Glutaminase/Asparaginase C-terminal domain VagYM4_19800 PF00710 Asparaginase, N-terminal VagYM4_19810 PF07023 Protein of unknown function (DUF1315) VagYM4_19830 PF01641 SelR domain VagYM4_19840 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VagYM4_19840 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VagYM4_19850 PF01263 Aldose 1-epimerase VagYM4_19860 PF02743 Cache domain VagYM4_19860 PF00672 HAMP domain VagYM4_19860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_19870 PF13847 Methyltransferase domain VagYM4_19900 PF00245 Alkaline phosphatase VagYM4_19920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM4_19930 PF03992 Antibiotic biosynthesis monooxygenase VagYM4_19940 PF00924 Mechanosensitive ion channel VagYM4_19940 PF05552 Conserved TM helix VagYM4_19950 PF03692 Putative zinc- or iron-chelating domain VagYM4_19960 PF04226 Transglycosylase associated protein VagYM4_19970 PF03692 Putative zinc- or iron-chelating domain VagYM4_19990 PF03313 Serine dehydratase alpha chain VagYM4_20000 PF01042 Endoribonuclease L-PSP VagYM4_20020 PF00230 Major intrinsic protein VagYM4_20030 PF02132 RecR protein VagYM4_20030 PF13662 Toprim domain VagYM4_20040 PF02575 YbaB/EbfC DNA-binding family VagYM4_20050 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VagYM4_20050 PF12170 DNA polymerase III tau subunit V interacting with alpha VagYM4_20050 PF12169 DNA polymerase III subunits gamma and tau domain III VagYM4_20060 PF00156 Phosphoribosyl transferase domain VagYM4_20070 PF04304 Protein of unknown function (DUF454) VagYM4_20090 PF00072 Response regulator receiver domain VagYM4_20100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_20100 PF03466 LysR substrate binding domain VagYM4_20110 PF00156 Phosphoribosyl transferase domain VagYM4_20120 PF02674 Colicin V production protein VagYM4_20130 PF05036 Sporulation related domain VagYM4_20140 PF08245 Mur ligase middle domain VagYM4_20140 PF02875 Mur ligase family, glutamate ligase domain VagYM4_20150 PF17848 Acetyl-coA carboxylase zinc finger domain VagYM4_20150 PF01039 Carboxyl transferase domain VagYM4_20160 PF01416 tRNA pseudouridine synthase VagYM4_20180 PF02774 Semialdehyde dehydrogenase, dimerisation domain VagYM4_20180 PF01118 Semialdehyde dehydrogenase, NAD binding domain VagYM4_20190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM4_20190 PF11890 Domain of unknown function (DUF3410) VagYM4_20190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM4_20200 PF02801 Beta-ketoacyl synthase, C-terminal domain VagYM4_20200 PF00109 Beta-ketoacyl synthase, N-terminal domain VagYM4_20210 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VagYM4_20210 PF01266 FAD dependent oxidoreductase VagYM4_20220 PF03358 NADPH-dependent FMN reductase VagYM4_20230 PF08891 YfcL protein VagYM4_20240 PF04315 Elongation factor P hydroxylase VagYM4_20250 PF03458 UPF0126 domain VagYM4_20260 PF01264 Chorismate synthase VagYM4_20270 PF05175 Methyltransferase small domain VagYM4_20280 PF01713 Smr domain VagYM4_20290 PF00300 Histidine phosphatase superfamily (branch 1) VagYM4_20300 PF16187 Middle or third domain of peptidase_M16 VagYM4_20300 PF00675 Insulinase (Peptidase family M16) VagYM4_20300 PF05193 Peptidase M16 inactive domain VagYM4_20320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VagYM4_20320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VagYM4_20320 PF00378 Enoyl-CoA hydratase/isomerase VagYM4_20330 PF02803 Thiolase, C-terminal domain VagYM4_20330 PF00108 Thiolase, N-terminal domain VagYM4_20340 PF08281 Sigma-70, region 4 VagYM4_20340 PF04542 Sigma-70 region 2 VagYM4_20360 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_20370 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_20380 PF04333 MlaA lipoprotein VagYM4_20390 PF03918 Cytochrome C biogenesis protein VagYM4_20400 PF03918 Cytochrome C biogenesis protein VagYM4_20410 PF08534 Redoxin VagYM4_20420 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VagYM4_20420 PF01578 Cytochrome C assembly protein VagYM4_20430 PF03100 CcmE VagYM4_20440 PF04995 Heme exporter protein D (CcmD) VagYM4_20450 PF01578 Cytochrome C assembly protein VagYM4_20460 PF03379 CcmB protein VagYM4_20470 PF00005 ABC transporter VagYM4_20490 PF01584 CheW-like domain VagYM4_20510 PF13614 AAA domain VagYM4_20520 PF00072 Response regulator receiver domain VagYM4_20520 PF01339 CheB methylesterase VagYM4_20530 PF01584 CheW-like domain VagYM4_20530 PF02895 Signal transducing histidine kinase, homodimeric domain VagYM4_20530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_20530 PF01627 Hpt domain VagYM4_20530 PF00072 Response regulator receiver domain VagYM4_20540 PF04344 Chemotaxis phosphatase, CheZ VagYM4_20550 PF00072 Response regulator receiver domain VagYM4_20560 PF04542 Sigma-70 region 2 VagYM4_20560 PF04539 Sigma-70 region 3 VagYM4_20560 PF04545 Sigma-70, region 4 VagYM4_20570 PF10609 NUBPL iron-transfer P-loop NTPase VagYM4_20580 PF00448 SRP54-type protein, GTPase domain VagYM4_20590 PF00771 FHIPEP family VagYM4_20600 PF01312 FlhB HrpN YscU SpaS Family VagYM4_20610 PF01311 Bacterial export proteins, family 1 VagYM4_20620 PF01313 Bacterial export proteins, family 3 VagYM4_20630 PF00813 FliP family VagYM4_20640 PF04347 Flagellar biosynthesis protein, FliO VagYM4_20650 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VagYM4_20660 PF02154 Flagellar motor switch protein FliM VagYM4_20660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VagYM4_20700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM4_20700 PF18269 T3SS EscN ATPase C-terminal domain VagYM4_20720 PF01706 FliG C-terminal domain VagYM4_20720 PF14842 FliG N-terminal domain VagYM4_20720 PF14841 FliG middle domain VagYM4_20730 PF08345 Flagellar M-ring protein C-terminal VagYM4_20730 PF01514 Secretory protein of YscJ/FliF family VagYM4_20740 PF02049 Flagellar hook-basal body complex protein FliE VagYM4_20750 PF00158 Sigma-54 interaction domain VagYM4_20750 PF00072 Response regulator receiver domain VagYM4_20750 PF02954 Bacterial regulatory protein, Fis family VagYM4_20760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_20760 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_20770 PF00158 Sigma-54 interaction domain VagYM4_20770 PF06490 Flagellar regulatory protein FleQ VagYM4_20770 PF02954 Bacterial regulatory protein, Fis family VagYM4_20780 PF02561 Flagellar protein FliS VagYM4_20800 PF02465 Flagellar hook-associated protein 2 N-terminus VagYM4_20800 PF07195 Flagellar hook-associated protein 2 C-terminus VagYM4_20800 PF07196 Flagellin hook IN motif VagYM4_20810 PF03646 FlaG protein VagYM4_20820 PF00700 Bacterial flagellin C-terminal helical region VagYM4_20820 PF07196 Flagellin hook IN motif VagYM4_20820 PF00669 Bacterial flagellin N-terminal helical region VagYM4_20830 PF00700 Bacterial flagellin C-terminal helical region VagYM4_20830 PF07196 Flagellin hook IN motif VagYM4_20830 PF00669 Bacterial flagellin N-terminal helical region VagYM4_20840 PF00669 Bacterial flagellin N-terminal helical region VagYM4_20840 PF07196 Flagellin hook IN motif VagYM4_20840 PF00700 Bacterial flagellin C-terminal helical region VagYM4_20850 PF04261 Dyp-type peroxidase family VagYM4_20860 PF11143 Protein of unknown function (DUF2919) VagYM4_20900 PF03960 ArsC family VagYM4_20910 PF01546 Peptidase family M20/M25/M40 VagYM4_20910 PF07687 Peptidase dimerisation domain VagYM4_20950 PF00701 Dihydrodipicolinate synthetase family VagYM4_20970 PF00578 AhpC/TSA family VagYM4_20980 PF01594 AI-2E family transporter VagYM4_21000 PF13181 Tetratricopeptide repeat VagYM4_21000 PF01435 Peptidase family M48 VagYM4_21010 PF03960 ArsC family VagYM4_21020 PF03358 NADPH-dependent FMN reductase VagYM4_21050 PF00860 Permease family VagYM4_21070 PF02769 AIR synthase related protein, C-terminal domain VagYM4_21070 PF00586 AIR synthase related protein, N-terminal domain VagYM4_21080 PF00551 Formyl transferase VagYM4_21090 PF13230 Glutamine amidotransferases class-II VagYM4_21100 PF13580 SIS domain VagYM4_21110 PF09317 Domain of unknown function (DUF1974) VagYM4_21110 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM4_21110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM4_21110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM4_21120 PF00916 Sulfate permease family VagYM4_21120 PF01740 STAS domain VagYM4_21170 PF00929 Exonuclease VagYM4_21180 PF00075 RNase H VagYM4_21190 PF08241 Methyltransferase domain VagYM4_21200 PF16123 Hydroxyacylglutathione hydrolase C-terminus VagYM4_21200 PF00753 Metallo-beta-lactamase superfamily VagYM4_21210 PF01476 LysM domain VagYM4_21210 PF01464 Transglycosylase SLT domain VagYM4_21230 PF03372 Endonuclease/Exonuclease/phosphatase family VagYM4_21240 PF00543 Nitrogen regulatory protein P-II VagYM4_21250 PF00034 Cytochrome c VagYM4_21260 PF09179 TilS substrate binding domain VagYM4_21260 PF01171 PP-loop family VagYM4_21260 PF11734 TilS substrate C-terminal domain VagYM4_21270 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VagYM4_21280 PF02811 PHP domain VagYM4_21280 PF07733 Bacterial DNA polymerase III alpha NTPase domain VagYM4_21280 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VagYM4_21280 PF01336 OB-fold nucleic acid binding domain VagYM4_21280 PF14579 Helix-hairpin-helix motif VagYM4_21290 PF01351 Ribonuclease HII VagYM4_21300 PF02684 Lipid-A-disaccharide synthetase VagYM4_21310 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM4_21310 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VagYM4_21320 PF07977 FabA-like domain VagYM4_21330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VagYM4_21330 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM4_21340 PF03938 Outer membrane protein (OmpH-like) VagYM4_21350 PF01103 Surface antigen VagYM4_21350 PF07244 Surface antigen variable number repeat VagYM4_21360 PF02163 Peptidase family M50 VagYM4_21360 PF17820 PDZ domain VagYM4_21370 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VagYM4_21370 PF13288 DXP reductoisomerase C-terminal domain VagYM4_21370 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VagYM4_21390 PF01255 Putative undecaprenyl diphosphate synthase VagYM4_21400 PF01765 Ribosome recycling factor VagYM4_21410 PF00696 Amino acid kinase family VagYM4_21420 PF00889 Elongation factor TS VagYM4_21430 PF00318 Ribosomal protein S2 VagYM4_21440 PF00557 Metallopeptidase family M24 VagYM4_21450 PF01842 ACT domain VagYM4_21450 PF08335 GlnD PII-uridylyltransferase VagYM4_21450 PF01966 HD domain VagYM4_21450 PF01909 Nucleotidyltransferase domain VagYM4_21460 PF11944 Protein of unknown function (DUF3461) VagYM4_21470 PF00849 RNA pseudouridylate synthase VagYM4_21480 PF00849 RNA pseudouridylate synthase VagYM4_21480 PF04287 tRNA pseudouridine synthase C VagYM4_21530 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VagYM4_21540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VagYM4_21540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM4_21550 PF01370 NAD dependent epimerase/dehydratase family VagYM4_21600 PF03806 AbgT putative transporter family VagYM4_21610 PF01197 Ribosomal protein L31 VagYM4_21620 PF18389 TrmO C-terminal domain VagYM4_21620 PF01980 tRNA-methyltransferase O VagYM4_21630 PF04073 Aminoacyl-tRNA editing domain VagYM4_21630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VagYM4_21630 PF03129 Anticodon binding domain VagYM4_21650 PF06786 Uncharacterised protein family (UPF0253) VagYM4_21670 PF00209 Sodium:neurotransmitter symporter family VagYM4_21680 PF00041 Fibronectin type III domain VagYM4_21680 PF02018 Carbohydrate binding domain VagYM4_21680 PF00704 Glycosyl hydrolases family 18 VagYM4_21700 PF01272 Transcription elongation factor, GreA/GreB, C-term VagYM4_21700 PF03449 Transcription elongation factor, N-terminal VagYM4_21710 PF00570 HRDC domain VagYM4_21710 PF09382 RQC domain VagYM4_21710 PF00271 Helicase conserved C-terminal domain VagYM4_21710 PF16124 RecQ zinc-binding VagYM4_21710 PF00270 DEAD/DEAH box helicase VagYM4_21720 PF00817 impB/mucB/samB family VagYM4_21720 PF11799 impB/mucB/samB family C-terminal domain VagYM4_21720 PF11798 IMS family HHH motif VagYM4_21750 PF02424 ApbE family VagYM4_21760 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM4_21760 PF00175 Oxidoreductase NAD-binding domain VagYM4_21760 PF00970 Oxidoreductase FAD-binding domain VagYM4_21770 PF02508 Rnf-Nqr subunit, membrane protein VagYM4_21780 PF02508 Rnf-Nqr subunit, membrane protein VagYM4_21790 PF04205 FMN-binding domain VagYM4_21800 PF03116 NQR2, RnfD, RnfE family VagYM4_21810 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VagYM4_21810 PF11973 NQRA C-terminal domain VagYM4_21820 PF01722 BolA-like protein VagYM4_21830 PF05175 Methyltransferase small domain VagYM4_21840 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VagYM4_21840 PF03923 Uncharacterized lipoprotein VagYM4_21850 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VagYM4_21860 PF07690 Major Facilitator Superfamily VagYM4_21880 PF04545 Sigma-70, region 4 VagYM4_21880 PF04542 Sigma-70 region 2 VagYM4_21910 PF03502 Nucleoside-specific channel-forming protein, Tsx VagYM4_21920 PF08546 Ketopantoate reductase PanE/ApbA C terminal VagYM4_21920 PF02558 Ketopantoate reductase PanE/ApbA VagYM4_21930 PF01965 DJ-1/PfpI family VagYM4_21940 PF00266 Aminotransferase class-V VagYM4_21950 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_21950 PF17158 Membrane-associated sensor, integral membrane domain VagYM4_21970 PF02657 Fe-S metabolism associated domain VagYM4_21980 PF00899 ThiF family VagYM4_21990 PF03562 MltA specific insert domain VagYM4_21990 PF06725 3D domain VagYM4_22010 PF00583 Acetyltransferase (GNAT) family VagYM4_22010 PF00696 Amino acid kinase family VagYM4_22050 PF13538 UvrD-like helicase C-terminal domain VagYM4_22060 PF13361 UvrD-like helicase C-terminal domain VagYM4_22060 PF00580 UvrD/REP helicase N-terminal domain VagYM4_22060 PF12705 PD-(D/E)XK nuclease superfamily VagYM4_22070 PF17946 RecC C-terminal domain VagYM4_22080 PF11893 Domain of unknown function (DUF3413) VagYM4_22080 PF00884 Sulfatase VagYM4_22100 PF03466 LysR substrate binding domain VagYM4_22100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_22110 PF07130 YebG protein VagYM4_22120 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VagYM4_22120 PF14602 Hexapeptide repeat of succinyl-transferase VagYM4_22130 PF03009 Glycerophosphoryl diester phosphodiesterase family VagYM4_22140 PF07690 Major Facilitator Superfamily VagYM4_22150 PF00230 Major intrinsic protein VagYM4_22160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VagYM4_22160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VagYM4_22170 PF08220 DeoR-like helix-turn-helix domain VagYM4_22170 PF00455 DeoR C terminal sensor domain VagYM4_22180 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VagYM4_22180 PF01266 FAD dependent oxidoreductase VagYM4_22190 PF01544 CorA-like Mg2+ transporter protein VagYM4_22220 PF01588 Putative tRNA binding domain VagYM4_22230 PF00356 Bacterial regulatory proteins, lacI family VagYM4_22260 PF00356 Bacterial regulatory proteins, lacI family VagYM4_22270 PF01263 Aldose 1-epimerase VagYM4_22280 PF08544 GHMP kinases C terminal VagYM4_22280 PF10509 Galactokinase galactose-binding signature VagYM4_22280 PF00288 GHMP kinases N terminal domain VagYM4_22290 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VagYM4_22290 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VagYM4_22300 PF16363 GDP-mannose 4,6 dehydratase VagYM4_22310 PF00356 Bacterial regulatory proteins, lacI family VagYM4_22320 PF02929 Beta galactosidase small chain VagYM4_22320 PF16353 Domain of unknown function(DUF4981) VagYM4_22320 PF00703 Glycosyl hydrolases family 2 VagYM4_22320 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VagYM4_22320 PF02837 Glycosyl hydrolases family 2, sugar binding domain VagYM4_22330 PF04074 YhcH/YjgK/YiaL VagYM4_22340 PF13520 Amino acid permease VagYM4_22350 PF03466 LysR substrate binding domain VagYM4_22350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_22410 PF00437 Type II/IV secretion system protein VagYM4_22470 PF13629 Pilus formation protein N terminal region VagYM4_22470 PF00263 Bacterial type II and III secretion system protein VagYM4_22470 PF04972 BON domain VagYM4_22520 PF12833 Helix-turn-helix domain VagYM4_22520 PF02805 Metal binding domain of Ada VagYM4_22530 PF00501 AMP-binding enzyme VagYM4_22550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_22550 PF03466 LysR substrate binding domain VagYM4_22560 PF14492 Elongation Factor G, domain II VagYM4_22560 PF03764 Elongation factor G, domain IV VagYM4_22560 PF00009 Elongation factor Tu GTP binding domain VagYM4_22560 PF03144 Elongation factor Tu domain 2 VagYM4_22560 PF00679 Elongation factor G C-terminus VagYM4_22570 PF18073 Rubredoxin metal binding domain VagYM4_22590 PF18429 Domain of unknown function (DUF5609) VagYM4_22610 PF01048 Phosphorylase superfamily VagYM4_22620 PF01676 Metalloenzyme superfamily VagYM4_22630 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VagYM4_22630 PF00591 Glycosyl transferase family, a/b domain VagYM4_22630 PF02885 Glycosyl transferase family, helical bundle domain VagYM4_22640 PF01791 DeoC/LacD family aldolase VagYM4_22650 PF07670 Nucleoside recognition VagYM4_22650 PF07662 Na+ dependent nucleoside transporter C-terminus VagYM4_22650 PF01773 Na+ dependent nucleoside transporter N-terminus VagYM4_22660 PF01026 TatD related DNase VagYM4_22680 PF16658 Class II release factor RF3, C-terminal domain VagYM4_22680 PF03144 Elongation factor Tu domain 2 VagYM4_22680 PF00009 Elongation factor Tu GTP binding domain VagYM4_22690 PF00717 Peptidase S24-like VagYM4_22690 PF01381 Helix-turn-helix VagYM4_22780 PF06122 Conjugative relaxosome accessory transposon protein VagYM4_22820 PF00072 Response regulator receiver domain VagYM4_22820 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_22830 PF01116 Fructose-bisphosphate aldolase class-II VagYM4_22870 PF13340 Putative transposase of IS4/5 family (DUF4096) VagYM4_22880 PF01435 Peptidase family M48 VagYM4_22900 PF01556 DnaJ C terminal domain VagYM4_22900 PF00226 DnaJ domain VagYM4_22910 PF07724 AAA domain (Cdc48 subfamily) VagYM4_22910 PF17871 AAA lid domain VagYM4_22910 PF02861 Clp amino terminal domain, pathogenicity island component VagYM4_22910 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_22910 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM4_22940 PF00012 Hsp70 protein VagYM4_22950 PF01025 GrpE VagYM4_22970 PF00999 Sodium/hydrogen exchanger family VagYM4_22970 PF02080 TrkA-C domain VagYM4_22970 PF02254 TrkA-N domain VagYM4_22980 PF00011 Hsp20/alpha crystallin family VagYM4_22990 PF00011 Hsp20/alpha crystallin family VagYM4_23010 PF00158 Sigma-54 interaction domain VagYM4_23010 PF00072 Response regulator receiver domain VagYM4_23010 PF02954 Bacterial regulatory protein, Fis family VagYM4_23110 PF04002 RadC-like JAB domain VagYM4_23120 PF00092 von Willebrand factor type A domain VagYM4_23160 PF07728 AAA domain (dynein-related subfamily) VagYM4_23160 PF08406 CbbQ/NirQ/NorQ C-terminal VagYM4_23200 PF00436 Single-strand binding protein family VagYM4_23230 PF01609 Transposase DDE domain VagYM4_23230 PF13006 Insertion element 4 transposase N-terminal VagYM4_23240 PF13006 Insertion element 4 transposase N-terminal VagYM4_23240 PF01609 Transposase DDE domain VagYM4_23260 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VagYM4_23280 PF01699 Sodium/calcium exchanger protein VagYM4_23290 PF05552 Conserved TM helix VagYM4_23290 PF00924 Mechanosensitive ion channel VagYM4_23300 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM4_23360 PF06986 Type-1V conjugative transfer system mating pair stabilisation VagYM4_23370 PF06834 TraU protein VagYM4_23390 PF10502 Signal peptidase, peptidase S26 VagYM4_23420 PF13098 Thioredoxin-like domain VagYM4_23420 PF10411 Disulfide bond isomerase protein N-terminus VagYM4_23590 PF18766 SWI2/SNF2 ATPase VagYM4_23590 PF12008 Type I restriction and modification enzyme - subunit R C terminal VagYM4_23590 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VagYM4_23610 PF01420 Type I restriction modification DNA specificity domain VagYM4_23620 PF02384 N-6 DNA Methylase VagYM4_23620 PF12161 HsdM N-terminal domain VagYM4_23650 PF07733 Bacterial DNA polymerase III alpha NTPase domain VagYM4_23650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VagYM4_23650 PF11490 DNA polymerase III polC-type N-terminus II VagYM4_23650 PF02811 PHP domain VagYM4_23650 PF14579 Helix-hairpin-helix motif VagYM4_23650 PF00929 Exonuclease VagYM4_23660 PF00717 Peptidase S24-like VagYM4_23670 PF00817 impB/mucB/samB family VagYM4_23670 PF13438 Domain of unknown function (DUF4113) VagYM4_23670 PF11799 impB/mucB/samB family C-terminal domain VagYM4_23680 PF13438 Domain of unknown function (DUF4113) VagYM4_23680 PF00817 impB/mucB/samB family VagYM4_23680 PF11799 impB/mucB/samB family C-terminal domain VagYM4_23780 PF13508 Acetyltransferase (GNAT) domain VagYM4_23790 PF02036 SCP-2 sterol transfer family VagYM4_23800 PF03707 Bacterial signalling protein N terminal repeat VagYM4_23800 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_23800 PF00563 EAL domain VagYM4_23810 PF01136 Peptidase family U32 VagYM4_23820 PF01136 Peptidase family U32 VagYM4_23830 PF01554 MatE VagYM4_23850 PF13181 Tetratricopeptide repeat VagYM4_23850 PF07719 Tetratricopeptide repeat VagYM4_23860 PF01138 3' exoribonuclease family, domain 1 VagYM4_23860 PF00013 KH domain VagYM4_23860 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VagYM4_23860 PF03725 3' exoribonuclease family, domain 2 VagYM4_23860 PF00575 S1 RNA binding domain VagYM4_23870 PF00312 Ribosomal protein S15 VagYM4_23880 PF09157 Pseudouridine synthase II TruB, C-terminal VagYM4_23880 PF16198 tRNA pseudouridylate synthase B C-terminal domain VagYM4_23880 PF01509 TruB family pseudouridylate synthase (N terminal domain) VagYM4_23890 PF02033 Ribosome-binding factor A VagYM4_23900 PF04760 Translation initiation factor IF-2, N-terminal region VagYM4_23900 PF11987 Translation-initiation factor 2 VagYM4_23900 PF08364 Bacterial translation initiation factor IF-2 associated region VagYM4_23900 PF00009 Elongation factor Tu GTP binding domain VagYM4_23910 PF00575 S1 RNA binding domain VagYM4_23910 PF08529 NusA N-terminal domain VagYM4_23910 PF13184 NusA-like KH domain VagYM4_23920 PF17384 RimP C-terminal SH3 domain VagYM4_23920 PF02576 RimP N-terminal domain VagYM4_23930 PF03840 Preprotein translocase SecG subunit VagYM4_23940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VagYM4_23940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VagYM4_23940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VagYM4_23940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VagYM4_23950 PF00809 Pterin binding enzyme VagYM4_23960 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_23960 PF17862 AAA+ lid domain VagYM4_23960 PF06480 FtsH Extracellular VagYM4_23960 PF01434 Peptidase family M41 VagYM4_23970 PF01728 FtsJ-like methyltransferase VagYM4_23980 PF01985 CRS1 / YhbY (CRM) domain VagYM4_23990 PF03449 Transcription elongation factor, N-terminal VagYM4_23990 PF01272 Transcription elongation factor, GreA/GreB, C-term VagYM4_24000 PF13609 Gram-negative porin VagYM4_24010 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VagYM4_24030 PF00579 tRNA synthetases class I (W and Y) VagYM4_24040 PF08525 Opacity-associated protein A N-terminal motif VagYM4_24040 PF01551 Peptidase family M23 VagYM4_24040 PF01476 LysM domain VagYM4_24050 PF00873 AcrB/AcrD/AcrF family VagYM4_24070 PF01521 Iron-sulphur cluster biosynthesis VagYM4_24080 PF00202 Aminotransferase class-III VagYM4_24090 PF01594 AI-2E family transporter VagYM4_24100 PF05175 Methyltransferase small domain VagYM4_24100 PF08468 Methyltransferase small domain N-terminal VagYM4_24110 PF00072 Response regulator receiver domain VagYM4_24110 PF09308 LuxQ, periplasmic VagYM4_24110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_24110 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_24120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_24130 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_24150 PF00005 ABC transporter VagYM4_24150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_24160 PF00005 ABC transporter VagYM4_24160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_24180 PF01869 BadF/BadG/BcrA/BcrD ATPase family VagYM4_24190 PF02838 Glycosyl hydrolase family 20, domain 2 VagYM4_24190 PF00728 Glycosyl hydrolase family 20, catalytic domain VagYM4_24200 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VagYM4_24200 PF06165 Glycosyltransferase family 36 VagYM4_24210 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VagYM4_24210 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VagYM4_24210 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VagYM4_24210 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VagYM4_24220 PF00005 ABC transporter VagYM4_24220 PF08402 TOBE domain VagYM4_24240 PF13416 Bacterial extracellular solute-binding protein VagYM4_24250 PF00909 Ammonium Transporter Family VagYM4_24260 PF00543 Nitrogen regulatory protein P-II VagYM4_24270 PF06062 Uncharacterised protein family (UPF0231) VagYM4_24280 PF00330 Aconitase family (aconitate hydratase) VagYM4_24280 PF06434 Aconitate hydratase 2 N-terminus VagYM4_24280 PF11791 Aconitate B N-terminal domain VagYM4_24290 PF01734 Patatin-like phospholipase VagYM4_24300 PF14814 Bifunctional transglycosylase second domain VagYM4_24300 PF00905 Penicillin binding protein transpeptidase domain VagYM4_24300 PF00912 Transglycosylase VagYM4_24310 PF00270 DEAD/DEAH box helicase VagYM4_24310 PF00271 Helicase conserved C-terminal domain VagYM4_24310 PF04408 Helicase associated domain (HA2) VagYM4_24310 PF08482 ATP-dependent helicase C-terminal VagYM4_24320 PF03749 Sugar fermentation stimulation protein RE domain VagYM4_24320 PF17746 SfsA N-terminal OB domain VagYM4_24330 PF01258 Prokaryotic dksA/traR C4-type zinc finger VagYM4_24340 PF00749 tRNA synthetases class I (E and Q), catalytic domain VagYM4_24350 PF12626 Polymerase A arginine-rich C-terminus VagYM4_24350 PF12627 Probable RNA and SrmB- binding site of polymerase A VagYM4_24350 PF01743 Poly A polymerase head domain VagYM4_24360 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VagYM4_24370 PF02548 Ketopantoate hydroxymethyltransferase VagYM4_24380 PF02569 Pantoate-beta-alanine ligase VagYM4_24390 PF03279 Bacterial lipid A biosynthesis acyltransferase VagYM4_24400 PF01061 ABC-2 type transporter VagYM4_24410 PF00005 ABC transporter VagYM4_24420 PF00916 Sulfate permease family VagYM4_24420 PF01740 STAS domain VagYM4_24430 PF00484 Carbonic anhydrase VagYM4_24440 PF00156 Phosphoribosyl transferase domain VagYM4_24450 PF00440 Bacterial regulatory proteins, tetR family VagYM4_24460 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_24460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_24470 PF02817 e3 binding domain VagYM4_24470 PF00364 Biotin-requiring enzyme VagYM4_24470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VagYM4_24480 PF17831 Pyruvate dehydrogenase E1 component middle domain VagYM4_24480 PF00456 Transketolase, thiamine diphosphate binding domain VagYM4_24490 PF07729 FCD domain VagYM4_24490 PF00392 Bacterial regulatory proteins, gntR family VagYM4_24500 PF01510 N-acetylmuramoyl-L-alanine amidase VagYM4_24510 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VagYM4_24510 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VagYM4_24530 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VagYM4_24530 PF00437 Type II/IV secretion system protein VagYM4_24540 PF00482 Type II secretion system (T2SS), protein F VagYM4_24550 PF01478 Type IV leader peptidase family VagYM4_24550 PF06750 Bacterial Peptidase A24 N-terminal domain VagYM4_24560 PF01121 Dephospho-CoA kinase VagYM4_24570 PF07072 Cell division protein VagYM4_24580 PF03884 DNA gyrase inhibitor YacG VagYM4_24590 PF01245 Ribosomal protein L19 VagYM4_24600 PF01746 tRNA (Guanine-1)-methyltransferase VagYM4_24610 PF05239 PRC-barrel domain VagYM4_24610 PF01782 RimM N-terminal domain VagYM4_24620 PF00886 Ribosomal protein S16 VagYM4_24630 PF02978 Signal peptide binding domain VagYM4_24630 PF02881 SRP54-type protein, helical bundle domain VagYM4_24630 PF00448 SRP54-type protein, GTPase domain VagYM4_24640 PF01578 Cytochrome C assembly protein VagYM4_24650 PF01595 Cyclin M transmembrane N-terminal domain VagYM4_24650 PF03471 Transporter associated domain VagYM4_24650 PF00571 CBS domain VagYM4_24660 PF02664 S-Ribosylhomocysteinase (LuxS) VagYM4_24680 PF04262 Glutamate-cysteine ligase VagYM4_24690 PF05193 Peptidase M16 inactive domain VagYM4_24690 PF00675 Insulinase (Peptidase family M16) VagYM4_24700 PF09335 SNARE associated Golgi protein VagYM4_24720 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VagYM4_24730 PF00682 HMGL-like VagYM4_24730 PF02436 Conserved carboxylase domain VagYM4_24730 PF00364 Biotin-requiring enzyme VagYM4_24740 PF04277 Oxaloacetate decarboxylase, gamma chain VagYM4_24750 PF02599 Global regulator protein family VagYM4_24760 PF13840 ACT domain VagYM4_24760 PF01842 ACT domain VagYM4_24760 PF00696 Amino acid kinase family VagYM4_24770 PF02272 DHHA1 domain VagYM4_24770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VagYM4_24770 PF01411 tRNA synthetases class II (A) VagYM4_24780 PF02631 RecX family VagYM4_24790 PF00154 recA bacterial DNA recombination protein VagYM4_24800 PF02464 Competence-damaged protein VagYM4_24810 PF01624 MutS domain I VagYM4_24810 PF05192 MutS domain III VagYM4_24810 PF05190 MutS family domain IV VagYM4_24810 PF00488 MutS domain V VagYM4_24810 PF05188 MutS domain II VagYM4_24820 PF00140 Sigma-70 factor, region 1.2 VagYM4_24820 PF04542 Sigma-70 region 2 VagYM4_24820 PF04539 Sigma-70 region 3 VagYM4_24820 PF04545 Sigma-70, region 4 VagYM4_24830 PF01551 Peptidase family M23 VagYM4_24830 PF01476 LysM domain VagYM4_24850 PF01975 Survival protein SurE VagYM4_24860 PF01142 tRNA pseudouridine synthase D (TruD) VagYM4_24870 PF02542 YgbB family VagYM4_24880 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VagYM4_24890 PF04977 Septum formation initiator VagYM4_24900 PF03952 Enolase, N-terminal domain VagYM4_24900 PF00113 Enolase, C-terminal TIM barrel domain VagYM4_24910 PF06418 CTP synthase N-terminus VagYM4_24910 PF00117 Glutamine amidotransferase class-I VagYM4_24920 PF03819 MazG nucleotide pyrophosphohydrolase domain VagYM4_24930 PF13291 ACT domain VagYM4_24930 PF04607 Region found in RelA / SpoT proteins VagYM4_24930 PF02824 TGS domain VagYM4_24940 PF05958 tRNA (Uracil-5-)-methyltransferase VagYM4_24940 PF01938 TRAM domain VagYM4_24950 PF00672 HAMP domain VagYM4_24950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_24950 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_24950 PF01627 Hpt domain VagYM4_24950 PF00072 Response regulator receiver domain VagYM4_24950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VagYM4_24960 PF01648 4'-phosphopantetheinyl transferase superfamily VagYM4_24970 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VagYM4_24980 PF11967 Recombination protein O N terminal VagYM4_24980 PF02565 Recombination protein O C terminal VagYM4_24990 PF07650 KH domain VagYM4_24990 PF01926 50S ribosome-binding GTPase VagYM4_25000 PF14622 Ribonuclease-III-like VagYM4_25000 PF00035 Double-stranded RNA binding motif VagYM4_25010 PF10502 Signal peptidase, peptidase S26 VagYM4_25020 PF03144 Elongation factor Tu domain 2 VagYM4_25020 PF06421 GTP-binding protein LepA C-terminus VagYM4_25020 PF00009 Elongation factor Tu GTP binding domain VagYM4_25020 PF00679 Elongation factor G C-terminus VagYM4_25040 PF17188 MucB/RseB C-terminal domain VagYM4_25040 PF03888 MucB/RseB N-terminal domain VagYM4_25050 PF03872 Anti sigma-E protein RseA, N-terminal domain VagYM4_25050 PF03873 Anti sigma-E protein RseA, C-terminal domain VagYM4_25060 PF04542 Sigma-70 region 2 VagYM4_25060 PF08281 Sigma-70, region 4 VagYM4_25070 PF00890 FAD binding domain VagYM4_25070 PF02910 Fumarate reductase flavoprotein C-term VagYM4_25090 PF03937 Flavinator of succinate dehydrogenase VagYM4_25100 PF01571 Aminomethyltransferase folate-binding domain VagYM4_25130 PF01494 FAD binding domain VagYM4_25140 PF01494 FAD binding domain VagYM4_25150 PF03695 Uncharacterised protein family (UPF0149) VagYM4_25160 PF05164 Cell division protein ZapA VagYM4_25170 PF01812 5-formyltetrahydrofolate cyclo-ligase family VagYM4_25180 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VagYM4_25190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM4_25190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM4_25190 PF01842 ACT domain VagYM4_25200 PF04402 Protein of unknown function (DUF541) VagYM4_25210 PF03466 LysR substrate binding domain VagYM4_25210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_25220 PF01810 LysE type translocator VagYM4_25240 PF05552 Conserved TM helix VagYM4_25240 PF00924 Mechanosensitive ion channel VagYM4_25250 PF01116 Fructose-bisphosphate aldolase class-II VagYM4_25260 PF00162 Phosphoglycerate kinase VagYM4_25270 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VagYM4_25270 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VagYM4_25280 PF00593 TonB dependent receptor VagYM4_25280 PF07715 TonB-dependent Receptor Plug Domain VagYM4_25290 PF03466 LysR substrate binding domain VagYM4_25290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_25300 PF02780 Transketolase, C-terminal domain VagYM4_25300 PF02779 Transketolase, pyrimidine binding domain VagYM4_25300 PF00456 Transketolase, thiamine diphosphate binding domain VagYM4_25310 PF02773 S-adenosylmethionine synthetase, C-terminal domain VagYM4_25310 PF00438 S-adenosylmethionine synthetase, N-terminal domain VagYM4_25310 PF02772 S-adenosylmethionine synthetase, central domain VagYM4_25330 PF10263 SprT-like family VagYM4_25330 PF17283 SprT-like zinc ribbon domain VagYM4_25340 PF04231 Endonuclease I VagYM4_25350 PF04452 RNA methyltransferase VagYM4_25360 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VagYM4_25360 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VagYM4_25370 PF02622 Uncharacterized ACR, COG1678 VagYM4_25380 PF03652 Holliday junction resolvase VagYM4_25390 PF00437 Type II/IV secretion system protein VagYM4_25400 PF00437 Type II/IV secretion system protein VagYM4_25410 PF01168 Alanine racemase, N-terminal domain VagYM4_25420 PF14748 Pyrroline-5-carboxylate reductase dimerisation VagYM4_25420 PF03807 NADP oxidoreductase coenzyme F420-dependent VagYM4_25430 PF02325 YGGT family VagYM4_25440 PF02594 Uncharacterised ACR, YggU family COG1872 VagYM4_25460 PF01725 Ham1 family VagYM4_25470 PF04055 Radical SAM superfamily VagYM4_25470 PF06969 HemN C-terminal domain VagYM4_25480 PF04960 Glutaminase VagYM4_25490 PF02086 D12 class N6 adenine-specific DNA methyltransferase VagYM4_25500 PF02390 Putative methyltransferase VagYM4_25510 PF00633 Helix-hairpin-helix motif VagYM4_25510 PF00730 HhH-GPD superfamily base excision DNA repair protein VagYM4_25510 PF14815 NUDIX domain VagYM4_25520 PF04362 Bacterial Fe(2+) trafficking VagYM4_25530 PF01464 Transglycosylase SLT domain VagYM4_25530 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VagYM4_25540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_25540 PF00672 HAMP domain VagYM4_25540 PF17200 Single Cache domain 2 VagYM4_25550 PF00171 Aldehyde dehydrogenase family VagYM4_25570 PF00356 Bacterial regulatory proteins, lacI family VagYM4_25570 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VagYM4_25580 PF04794 YdjC-like protein VagYM4_25590 PF11975 Family 4 glycosyl hydrolase C-terminal domain VagYM4_25590 PF02056 Family 4 glycosyl hydrolase VagYM4_25600 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VagYM4_25610 PF02378 Phosphotransferase system, EIIC VagYM4_25620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM4_25630 PF01522 Polysaccharide deacetylase VagYM4_25640 PF08448 PAS fold VagYM4_25640 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_25650 PF01548 Transposase VagYM4_25650 PF02371 Transposase IS116/IS110/IS902 family VagYM4_25660 PF02371 Transposase IS116/IS110/IS902 family VagYM4_25660 PF01548 Transposase VagYM4_25680 PF13737 Transposase DDE domain VagYM4_25700 PF00483 Nucleotidyl transferase VagYM4_25780 PF00072 Response regulator receiver domain VagYM4_25780 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_25950 PF10011 Predicted membrane protein (DUF2254) VagYM4_25970 PF03739 Lipopolysaccharide export system permease LptF/LptG VagYM4_25980 PF03739 Lipopolysaccharide export system permease LptF/LptG VagYM4_25990 PF02789 Cytosol aminopeptidase family, N-terminal domain VagYM4_25990 PF00883 Cytosol aminopeptidase family, catalytic domain VagYM4_26000 PF04364 DNA polymerase III chi subunit, HolC VagYM4_26010 PF08264 Anticodon-binding domain of tRNA VagYM4_26010 PF00133 tRNA synthetases class I (I, L, M and V) VagYM4_26010 PF10458 Valyl tRNA synthetase tRNA binding arm VagYM4_26030 PF00583 Acetyltransferase (GNAT) family VagYM4_26050 PF06877 Regulator of ribonuclease activity B VagYM4_26070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VagYM4_26070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VagYM4_26090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VagYM4_26090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VagYM4_26100 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VagYM4_26100 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VagYM4_26110 PF01042 Endoribonuclease L-PSP VagYM4_26120 PF01553 Acyltransferase VagYM4_26130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VagYM4_26140 PF01722 BolA-like protein VagYM4_26160 PF05494 MlaC protein VagYM4_26170 PF02470 MlaD protein VagYM4_26180 PF02405 Permease MlaE VagYM4_26190 PF00005 ABC transporter VagYM4_26200 PF01699 Sodium/calcium exchanger protein VagYM4_26210 PF01380 SIS domain VagYM4_26210 PF00571 CBS domain VagYM4_26230 PF03968 OstA-like protein VagYM4_26240 PF12399 Branched-chain amino acid ATP-binding cassette transporter VagYM4_26240 PF00005 ABC transporter VagYM4_26250 PF04552 Sigma-54, DNA binding domain VagYM4_26250 PF04963 Sigma-54 factor, core binding domain VagYM4_26250 PF00309 Sigma-54 factor, Activator interacting domain (AID) VagYM4_26260 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VagYM4_26270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM4_26280 PF03668 P-loop ATPase protein family VagYM4_26290 PF00381 PTS HPr component phosphorylation site VagYM4_26300 PF03448 MgtE intracellular N domain VagYM4_26300 PF00571 CBS domain VagYM4_26300 PF01769 Divalent cation transporter VagYM4_26310 PF01523 Putative modulator of DNA gyrase VagYM4_26320 PF04751 Protein of unknown function (DUF615) VagYM4_26330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM4_26330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM4_26340 PF00849 RNA pseudouridylate synthase VagYM4_26360 PF12137 RNA polymerase recycling family C-terminal VagYM4_26360 PF18337 RapA N-terminal Tudor like domain VagYM4_26360 PF18339 RapA N-terminal Tudor like domain 1 VagYM4_26360 PF00271 Helicase conserved C-terminal domain VagYM4_26360 PF00176 SNF2 family N-terminal domain VagYM4_26370 PF02562 PhoH-like protein VagYM4_26370 PF13638 PIN domain VagYM4_26380 PF01523 Putative modulator of DNA gyrase VagYM4_26390 PF00795 Carbon-nitrogen hydrolase VagYM4_26400 PF13502 AsmA-like C-terminal region VagYM4_26400 PF13116 Protein of unknown function VagYM4_26410 PF10150 Ribonuclease E/G family VagYM4_26410 PF00575 S1 RNA binding domain VagYM4_26420 PF02545 Maf-like protein VagYM4_26430 PF04093 rod shape-determining protein MreD VagYM4_26440 PF04085 rod shape-determining protein MreC VagYM4_26520 PF07963 Prokaryotic N-terminal methylation motif VagYM4_26520 PF00114 Pilin (bacterial filament) VagYM4_26540 PF00482 Type II secretion system (T2SS), protein F VagYM4_26550 PF00437 Type II/IV secretion system protein VagYM4_26550 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VagYM4_26570 PF01471 Putative peptidoglycan binding domain VagYM4_26570 PF13401 AAA domain VagYM4_26580 PF03958 Bacterial type II/III secretion system short domain VagYM4_26580 PF00263 Bacterial type II and III secretion system protein VagYM4_26620 PF17157 Gammaproteobacterial periplasmic sensor domain VagYM4_26620 PF00563 EAL domain VagYM4_26620 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_26630 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VagYM4_26630 PF01348 Type II intron maturase VagYM4_26640 PF00436 Single-strand binding protein family VagYM4_26650 PF00196 Bacterial regulatory proteins, luxR family VagYM4_26660 PF00483 Nucleotidyl transferase VagYM4_26670 PF17755 UvrA DNA-binding domain VagYM4_26670 PF17760 UvrA interaction domain VagYM4_26670 PF00005 ABC transporter VagYM4_26690 PF00266 Aminotransferase class-V VagYM4_26700 PF01842 ACT domain VagYM4_26700 PF00696 Amino acid kinase family VagYM4_26710 PF02965 Vitamin B12 dependent methionine synthase, activation domain VagYM4_26710 PF02310 B12 binding domain VagYM4_26710 PF02607 B12 binding domain VagYM4_26710 PF02574 Homocysteine S-methyltransferase VagYM4_26710 PF00809 Pterin binding enzyme VagYM4_26720 PF00999 Sodium/hydrogen exchanger family VagYM4_26730 PF00665 Integrase core domain VagYM4_26740 PF01527 Transposase VagYM4_26750 PF01507 Phosphoadenosine phosphosulfate reductase family VagYM4_26760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VagYM4_26760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VagYM4_26770 PF00175 Oxidoreductase NAD-binding domain VagYM4_26770 PF00667 FAD binding domain VagYM4_26770 PF00258 Flavodoxin VagYM4_26810 PF01207 Dihydrouridine synthase (Dus) VagYM4_26840 PF01810 LysE type translocator VagYM4_26860 PF13183 4Fe-4S dicluster domain VagYM4_26860 PF02754 Cysteine-rich domain VagYM4_26870 PF00890 FAD binding domain VagYM4_26880 PF01266 FAD dependent oxidoreductase VagYM4_26880 PF04324 BFD-like [2Fe-2S] binding domain VagYM4_26890 PF13737 Transposase DDE domain VagYM4_27020 PF01475 Ferric uptake regulator family VagYM4_27040 PF00342 Phosphoglucose isomerase VagYM4_27060 PF01894 Uncharacterised protein family UPF0047 VagYM4_27070 PF01168 Alanine racemase, N-terminal domain VagYM4_27070 PF00842 Alanine racemase, C-terminal domain VagYM4_27080 PF03796 DnaB-like helicase C terminal domain VagYM4_27080 PF00772 DnaB-like helicase N terminal domain VagYM4_27100 PF01281 Ribosomal protein L9, N-terminal domain VagYM4_27100 PF03948 Ribosomal protein L9, C-terminal domain VagYM4_27110 PF01084 Ribosomal protein S18 VagYM4_27120 PF00436 Single-strand binding protein family VagYM4_27130 PF01250 Ribosomal protein S6 VagYM4_27140 PF00834 Ribulose-phosphate 3 epimerase family VagYM4_27150 PF02086 D12 class N6 adenine-specific DNA methyltransferase VagYM4_27170 PF01761 3-dehydroquinate synthase VagYM4_27180 PF01202 Shikimate kinase VagYM4_27190 PF11741 AMIN domain VagYM4_27190 PF00263 Bacterial type II and III secretion system protein VagYM4_27190 PF07660 Secretin and TonB N terminus short domain VagYM4_27190 PF03958 Bacterial type II/III secretion system short domain VagYM4_27240 PF00905 Penicillin binding protein transpeptidase domain VagYM4_27240 PF00912 Transglycosylase VagYM4_27240 PF17092 Penicillin-binding protein OB-like domain VagYM4_27250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_27250 PF03466 LysR substrate binding domain VagYM4_27260 PF00462 Glutaredoxin VagYM4_27260 PF08534 Redoxin VagYM4_27270 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_27270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_27300 PF14698 Argininosuccinate lyase C-terminal VagYM4_27300 PF00206 Lyase VagYM4_27300 PF00583 Acetyltransferase (GNAT) family VagYM4_27310 PF00764 Arginosuccinate synthase VagYM4_27320 PF00696 Amino acid kinase family VagYM4_27330 PF01118 Semialdehyde dehydrogenase, NAD binding domain VagYM4_27330 PF02774 Semialdehyde dehydrogenase, dimerisation domain VagYM4_27340 PF07687 Peptidase dimerisation domain VagYM4_27340 PF01546 Peptidase family M20/M25/M40 VagYM4_27350 PF00311 Phosphoenolpyruvate carboxylase VagYM4_27370 PF02219 Methylenetetrahydrofolate reductase VagYM4_27380 PF00742 Homoserine dehydrogenase VagYM4_27380 PF03447 Homoserine dehydrogenase, NAD binding domain VagYM4_27380 PF00696 Amino acid kinase family VagYM4_27390 PF01053 Cys/Met metabolism PLP-dependent enzyme VagYM4_27410 PF03949 Malic enzyme, NAD binding domain VagYM4_27410 PF00390 Malic enzyme, N-terminal domain VagYM4_27420 PF00210 Ferritin-like domain VagYM4_27430 PF04324 BFD-like [2Fe-2S] binding domain VagYM4_27440 PF03143 Elongation factor Tu C-terminal domain VagYM4_27440 PF00009 Elongation factor Tu GTP binding domain VagYM4_27440 PF03144 Elongation factor Tu domain 2 VagYM4_27450 PF00009 Elongation factor Tu GTP binding domain VagYM4_27450 PF03144 Elongation factor Tu domain 2 VagYM4_27450 PF03764 Elongation factor G, domain IV VagYM4_27450 PF00679 Elongation factor G C-terminus VagYM4_27450 PF14492 Elongation Factor G, domain II VagYM4_27460 PF00177 Ribosomal protein S7p/S5e VagYM4_27470 PF00164 Ribosomal protein S12/S23 VagYM4_27480 PF04077 DsrH like protein VagYM4_27490 PF02635 DsrE/DsrF-like family VagYM4_27500 PF02635 DsrE/DsrF-like family VagYM4_27510 PF13309 HTH domain VagYM4_27510 PF08348 YheO-like PAS domain VagYM4_27520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM4_27520 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VagYM4_27540 PF04102 SlyX VagYM4_27550 PF01112 Asparaginase VagYM4_27560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM4_27580 PF02254 TrkA-N domain VagYM4_27580 PF00999 Sodium/hydrogen exchanger family VagYM4_27590 PF02525 Flavodoxin-like fold VagYM4_27600 PF12848 ABC transporter VagYM4_27600 PF00005 ABC transporter VagYM4_27620 PF00561 alpha/beta hydrolase fold VagYM4_27630 PF06794 Uncharacterised protein family (UPF0270) VagYM4_27640 PF00485 Phosphoribulokinase / Uridine kinase family VagYM4_27650 PF00027 Cyclic nucleotide-binding domain VagYM4_27650 PF13545 Crp-like helix-turn-helix domain VagYM4_27670 PF00171 Aldehyde dehydrogenase family VagYM4_27680 PF04958 Arginine N-succinyltransferase beta subunit VagYM4_27690 PF00202 Aminotransferase class-III VagYM4_27700 PF00117 Glutamine amidotransferase class-I VagYM4_27730 PF00579 tRNA synthetases class I (W and Y) VagYM4_27740 PF13419 Haloacid dehalogenase-like hydrolase VagYM4_27750 PF00588 SpoU rRNA Methylase family VagYM4_27750 PF08032 RNA 2'-O ribose methyltransferase substrate binding VagYM4_27760 PF00575 S1 RNA binding domain VagYM4_27760 PF17876 Cold shock domain VagYM4_27760 PF08461 Ribonuclease R winged-helix domain VagYM4_27760 PF08206 Ribonuclease B OB domain VagYM4_27760 PF00773 RNB domain VagYM4_27770 PF02082 Transcriptional regulator VagYM4_27780 PF00970 Oxidoreductase FAD-binding domain VagYM4_27780 PF00042 Globin VagYM4_27780 PF00175 Oxidoreductase NAD-binding domain VagYM4_27790 PF08238 Sel1 repeat VagYM4_27800 PF00709 Adenylosuccinate synthetase VagYM4_27810 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VagYM4_27820 PF01145 SPFH domain / Band 7 family VagYM4_27830 PF12221 Bacterial membrane protein N terminal VagYM4_27830 PF01145 SPFH domain / Band 7 family VagYM4_27840 PF13167 GTP-binding GTPase N-terminal VagYM4_27840 PF16360 GTP-binding GTPase Middle Region VagYM4_27840 PF01926 50S ribosome-binding GTPase VagYM4_27850 PF17209 Hfq protein VagYM4_27870 PF01119 DNA mismatch repair protein, C-terminal domain VagYM4_27870 PF08676 MutL C terminal dimerisation domain VagYM4_27880 PF01520 N-acetylmuramoyl-L-alanine amidase VagYM4_27890 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VagYM4_27900 PF08331 Domain of unknown function (DUF1730) VagYM4_27910 PF00929 Exonuclease VagYM4_27920 PF03193 RsgA GTPase VagYM4_27930 PF02666 Phosphatidylserine decarboxylase VagYM4_27940 PF03600 Citrate transporter VagYM4_27940 PF02080 TrkA-C domain VagYM4_27960 PF01676 Metalloenzyme superfamily VagYM4_27960 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VagYM4_27970 PF00581 Rhodanese-like domain VagYM4_27980 PF02556 Preprotein translocase subunit SecB VagYM4_27990 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VagYM4_27990 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VagYM4_28000 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM4_28000 PF06426 Serine acetyltransferase, N-terminal VagYM4_28010 PF01551 Peptidase family M23 VagYM4_28030 PF00440 Bacterial regulatory proteins, tetR family VagYM4_28030 PF08360 QacR-like protein, C-terminal region VagYM4_28050 PF00152 tRNA synthetases class II (D, K and N) VagYM4_28060 PF02910 Fumarate reductase flavoprotein C-term VagYM4_28060 PF00890 FAD binding domain VagYM4_28070 PF13183 4Fe-4S dicluster domain VagYM4_28070 PF13085 2Fe-2S iron-sulfur cluster binding domain VagYM4_28080 PF02300 Fumarate reductase subunit C VagYM4_28090 PF02313 Fumarate reductase subunit D VagYM4_28110 PF01132 Elongation factor P (EF-P) OB domain VagYM4_28110 PF08207 Elongation factor P (EF-P) KOW-like domain VagYM4_28110 PF09285 Elongation factor P, C-terminal VagYM4_28120 PF04055 Radical SAM superfamily VagYM4_28130 PF02308 MgtC family VagYM4_28150 PF00118 TCP-1/cpn60 chaperonin family VagYM4_28160 PF00166 Chaperonin 10 Kd subunit VagYM4_28170 PF01554 MatE VagYM4_28180 PF00365 Phosphofructokinase VagYM4_28190 PF01545 Cation efflux family VagYM4_28190 PF16916 Dimerisation domain of Zinc Transporter VagYM4_28210 PF00072 Response regulator receiver domain VagYM4_28210 PF00486 Transcriptional regulatory protein, C terminal VagYM4_28220 PF00672 HAMP domain VagYM4_28220 PF16527 Two-component sensor protein CpxA, periplasmic domain VagYM4_28220 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_28220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_28230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VagYM4_28230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VagYM4_28240 PF00588 SpoU rRNA Methylase family VagYM4_28250 PF04186 FxsA cytoplasmic membrane protein VagYM4_28260 PF00206 Lyase VagYM4_28260 PF10415 Fumarase C C-terminus VagYM4_28270 PF03605 Anaerobic c4-dicarboxylate membrane transporter VagYM4_28280 PF02683 Cytochrome C biogenesis protein transmembrane region VagYM4_28280 PF11412 Disulphide bond corrector protein DsbC VagYM4_28290 PF00196 Bacterial regulatory proteins, luxR family VagYM4_28290 PF00072 Response regulator receiver domain VagYM4_28300 PF03471 Transporter associated domain VagYM4_28300 PF00999 Sodium/hydrogen exchanger family VagYM4_28300 PF02080 TrkA-C domain VagYM4_28320 PF00474 Sodium:solute symporter family VagYM4_28350 PF00206 Lyase VagYM4_28350 PF10415 Fumarase C C-terminus VagYM4_28360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_28360 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_28360 PF00072 Response regulator receiver domain VagYM4_28360 PF09308 LuxQ, periplasmic VagYM4_28370 PF12832 MFS_1 like family VagYM4_28400 PF00501 AMP-binding enzyme VagYM4_28400 PF13193 AMP-binding enzyme C-terminal domain VagYM4_28400 PF16177 Acetyl-coenzyme A synthetase N-terminus VagYM4_28410 PF01220 Dehydroquinase class II VagYM4_28420 PF00364 Biotin-requiring enzyme VagYM4_28430 PF00289 Biotin carboxylase, N-terminal domain VagYM4_28430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VagYM4_28430 PF02785 Biotin carboxylase C-terminal domain VagYM4_28450 PF01207 Dihydrouridine synthase (Dus) VagYM4_28460 PF02954 Bacterial regulatory protein, Fis family VagYM4_28480 PF12848 ABC transporter VagYM4_28480 PF00005 ABC transporter VagYM4_28490 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VagYM4_28490 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VagYM4_28490 PF01276 Orn/Lys/Arg decarboxylase, major domain VagYM4_28500 PF13520 Amino acid permease VagYM4_28520 PF18500 CadC C-terminal domain 1 VagYM4_28520 PF00486 Transcriptional regulatory protein, C terminal VagYM4_28530 PF13411 MerR HTH family regulatory protein VagYM4_28540 PF02142 MGS-like domain VagYM4_28540 PF01808 AICARFT/IMPCHase bienzyme VagYM4_28550 PF02844 Phosphoribosylglycinamide synthetase, N domain VagYM4_28550 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VagYM4_28550 PF02843 Phosphoribosylglycinamide synthetase, C domain VagYM4_28570 PF00216 Bacterial DNA-binding protein VagYM4_28580 PF01595 Cyclin M transmembrane N-terminal domain VagYM4_28580 PF00571 CBS domain VagYM4_28590 PF04222 Protein of unknown function (DUF416) VagYM4_28600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM4_28610 PF03167 Uracil DNA glycosylase superfamily VagYM4_28620 PF01208 Uroporphyrinogen decarboxylase (URO-D) VagYM4_28630 PF09297 NADH pyrophosphatase zinc ribbon domain VagYM4_28630 PF00293 NUDIX domain VagYM4_28640 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VagYM4_28650 PF04997 RNA polymerase Rpb1, domain 1 VagYM4_28650 PF04998 RNA polymerase Rpb1, domain 5 VagYM4_28650 PF00623 RNA polymerase Rpb1, domain 2 VagYM4_28650 PF04983 RNA polymerase Rpb1, domain 3 VagYM4_28650 PF05000 RNA polymerase Rpb1, domain 4 VagYM4_28660 PF04560 RNA polymerase Rpb2, domain 7 VagYM4_28660 PF04565 RNA polymerase Rpb2, domain 3 VagYM4_28660 PF04563 RNA polymerase beta subunit VagYM4_28660 PF04561 RNA polymerase Rpb2, domain 2 VagYM4_28660 PF00562 RNA polymerase Rpb2, domain 6 VagYM4_28660 PF10385 RNA polymerase beta subunit external 1 domain VagYM4_28670 PF16320 Ribosomal protein L7/L12 dimerisation domain VagYM4_28670 PF00542 Ribosomal protein L7/L12 C-terminal domain VagYM4_28680 PF00466 Ribosomal protein L10 VagYM4_28690 PF00687 Ribosomal protein L1p/L10e family VagYM4_28700 PF00298 Ribosomal protein L11, RNA binding domain VagYM4_28700 PF03946 Ribosomal protein L11, N-terminal domain VagYM4_28710 PF00467 KOW motif VagYM4_28710 PF02357 Transcription termination factor nusG VagYM4_28720 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VagYM4_28730 PF03143 Elongation factor Tu C-terminal domain VagYM4_28730 PF03144 Elongation factor Tu domain 2 VagYM4_28730 PF00009 Elongation factor Tu GTP binding domain VagYM4_28740 PF00485 Phosphoribulokinase / Uridine kinase family VagYM4_28750 PF08279 HTH domain VagYM4_28750 PF03099 Biotin/lipoate A/B protein ligase family VagYM4_28750 PF02237 Biotin protein ligase C terminal domain VagYM4_28760 PF01565 FAD binding domain VagYM4_28760 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VagYM4_28780 PF13091 PLD-like domain VagYM4_28800 PF01177 Asp/Glu/Hydantoin racemase VagYM4_28820 PF00593 TonB dependent receptor VagYM4_28820 PF07715 TonB-dependent Receptor Plug Domain VagYM4_28830 PF05958 tRNA (Uracil-5-)-methyltransferase VagYM4_28850 PF00440 Bacterial regulatory proteins, tetR family VagYM4_28860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_28860 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_28870 PF01554 MatE VagYM4_28880 PF04072 Leucine carboxyl methyltransferase VagYM4_28890 PF00717 Peptidase S24-like VagYM4_28890 PF01726 LexA DNA binding domain VagYM4_28900 PF01553 Acyltransferase VagYM4_28910 PF01040 UbiA prenyltransferase family VagYM4_28920 PF04345 Chorismate lyase VagYM4_28930 PF03748 Flagellar basal body-associated protein FliL VagYM4_28940 PF01694 Rhomboid family VagYM4_28940 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VagYM4_28950 PF00581 Rhodanese-like domain VagYM4_28960 PF00140 Sigma-70 factor, region 1.2 VagYM4_28960 PF04542 Sigma-70 region 2 VagYM4_28960 PF04545 Sigma-70, region 4 VagYM4_28970 PF18075 FtsX extracellular domain VagYM4_28980 PF00005 ABC transporter VagYM4_28990 PF00448 SRP54-type protein, GTPase domain VagYM4_28990 PF02881 SRP54-type protein, helical bundle domain VagYM4_29020 PF01914 MarC family integral membrane protein VagYM4_29070 PF10694 Protein of unknown function (DUF2500) VagYM4_29110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VagYM4_29110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VagYM4_29120 PF01022 Bacterial regulatory protein, arsR family VagYM4_29130 PF00563 EAL domain VagYM4_29130 PF08668 HDOD domain VagYM4_29140 PF01810 LysE type translocator VagYM4_29150 PF12146 Serine aminopeptidase, S33 VagYM4_29200 PF10442 FIST C domain VagYM4_29200 PF08495 FIST N domain VagYM4_29200 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_29200 PF00563 EAL domain VagYM4_29210 PF13419 Haloacid dehalogenase-like hydrolase VagYM4_29220 PF02899 Phage integrase, N-terminal SAM-like domain VagYM4_29220 PF00589 Phage integrase family VagYM4_29240 PF01678 Diaminopimelate epimerase VagYM4_29250 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VagYM4_29250 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VagYM4_29260 PF01491 Frataxin-like domain VagYM4_29280 PF12633 Adenylate cyclase NT domain VagYM4_29280 PF01295 Adenylate cyclase, class-I VagYM4_29290 PF03900 Porphobilinogen deaminase, C-terminal domain VagYM4_29290 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VagYM4_29300 PF02602 Uroporphyrinogen-III synthase HemD VagYM4_29310 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VagYM4_29320 PF07219 HemY protein N-terminus VagYM4_29330 PF00175 Oxidoreductase NAD-binding domain VagYM4_29340 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM4_29350 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VagYM4_29370 PF07497 Rho termination factor, RNA-binding domain VagYM4_29370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM4_29370 PF07498 Rho termination factor, N-terminal domain VagYM4_29380 PF00085 Thioredoxin VagYM4_29390 PF00271 Helicase conserved C-terminal domain VagYM4_29390 PF00270 DEAD/DEAH box helicase VagYM4_29400 PF02541 Ppx/GppA phosphatase family VagYM4_29410 PF02592 Putative vitamin uptake transporter VagYM4_29430 PF00271 Helicase conserved C-terminal domain VagYM4_29430 PF00270 DEAD/DEAH box helicase VagYM4_29430 PF00570 HRDC domain VagYM4_29430 PF09382 RQC domain VagYM4_29430 PF16124 RecQ zinc-binding VagYM4_29440 PF00892 EamA-like transporter family VagYM4_29460 PF01810 LysE type translocator VagYM4_29490 PF13361 UvrD-like helicase C-terminal domain VagYM4_29490 PF00580 UvrD/REP helicase N-terminal domain VagYM4_29510 PF05114 Protein of unknown function (DUF692) VagYM4_29550 PF07690 Major Facilitator Superfamily VagYM4_29560 PF03466 LysR substrate binding domain VagYM4_29560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_29570 PF00557 Metallopeptidase family M24 VagYM4_29570 PF01321 Creatinase/Prolidase N-terminal domain VagYM4_29570 PF00557 Metallopeptidase family M24 VagYM4_29570 PF01321 Creatinase/Prolidase N-terminal domain VagYM4_29580 PF04055 Radical SAM superfamily VagYM4_29580 PF06968 Biotin and Thiamin Synthesis associated domain VagYM4_29590 PF05690 Thiazole biosynthesis protein ThiG VagYM4_29610 PF00899 ThiF family VagYM4_29620 PF02581 Thiamine monophosphate synthase VagYM4_29630 PF13667 ThiC-associated domain VagYM4_29630 PF01964 Radical SAM ThiC family VagYM4_29640 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VagYM4_29650 PF07732 Multicopper oxidase VagYM4_29650 PF07731 Multicopper oxidase VagYM4_29650 PF00394 Multicopper oxidase VagYM4_29660 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM4_29670 PF07369 Protein of unknown function (DUF1488) VagYM4_29680 PF08501 Shikimate dehydrogenase substrate binding domain VagYM4_29680 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VagYM4_29680 PF01488 Shikimate / quinate 5-dehydrogenase VagYM4_29690 PF01218 Coproporphyrinogen III oxidase VagYM4_29700 PF01300 Telomere recombination VagYM4_29710 PF00731 AIR carboxylase VagYM4_29720 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VagYM4_29720 PF02222 ATP-grasp domain VagYM4_29730 PF01396 Topoisomerase DNA binding C4 zinc finger VagYM4_29740 PF04361 Protein of unknown function (DUF494) VagYM4_29750 PF17782 DprA winged helix domain VagYM4_29750 PF02481 DNA recombination-mediator protein A VagYM4_29770 PF01327 Polypeptide deformylase VagYM4_29780 PF00551 Formyl transferase VagYM4_29780 PF02911 Formyl transferase, C-terminal domain VagYM4_29790 PF01189 16S rRNA methyltransferase RsmB/F VagYM4_29790 PF01029 NusB family VagYM4_29800 PF01189 16S rRNA methyltransferase RsmB/F VagYM4_29800 PF01029 NusB family VagYM4_29810 PF02080 TrkA-C domain VagYM4_29810 PF02254 TrkA-N domain VagYM4_29820 PF02386 Cation transport protein VagYM4_29840 PF03006 Haemolysin-III related VagYM4_29850 PF07070 SpoOM protein VagYM4_29870 PF06288 Protein of unknown function (DUF1040) VagYM4_29880 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VagYM4_29880 PF12801 4Fe-4S binding domain VagYM4_29880 PF13746 4Fe-4S dicluster domain VagYM4_29890 PF01636 Phosphotransferase enzyme family VagYM4_29900 PF01323 DSBA-like thioredoxin domain VagYM4_29910 PF01553 Acyltransferase VagYM4_29930 PF01078 Magnesium chelatase, subunit ChlI VagYM4_29930 PF13335 Magnesium chelatase, subunit ChlI C-terminal VagYM4_29940 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VagYM4_29940 PF00205 Thiamine pyrophosphate enzyme, central domain VagYM4_29940 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM4_29960 PF01063 Amino-transferase class IV VagYM4_29970 PF00920 Dehydratase family VagYM4_29980 PF00585 C-terminal regulatory domain of Threonine dehydratase VagYM4_29980 PF00291 Pyridoxal-phosphate dependent enzyme VagYM4_29990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_29990 PF03466 LysR substrate binding domain VagYM4_30000 PF07690 Major Facilitator Superfamily VagYM4_30010 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_30020 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_30030 PF12804 MobA-like NTP transferase domain VagYM4_30030 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM4_30040 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VagYM4_30040 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VagYM4_30050 PF02874 ATP synthase alpha/beta family, beta-barrel domain VagYM4_30050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM4_30060 PF00231 ATP synthase VagYM4_30070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM4_30070 PF00306 ATP synthase alpha/beta chain, C terminal domain VagYM4_30070 PF02874 ATP synthase alpha/beta family, beta-barrel domain VagYM4_30080 PF00213 ATP synthase delta (OSCP) subunit VagYM4_30090 PF00430 ATP synthase B/B' CF(0) VagYM4_30100 PF00137 ATP synthase subunit C VagYM4_30110 PF00119 ATP synthase A chain VagYM4_30120 PF03899 ATP synthase I chain VagYM4_30130 PF02195 ParB-like nuclease domain VagYM4_30130 PF17762 HTH domain found in ParB protein VagYM4_30140 PF13614 AAA domain VagYM4_30150 PF02527 rRNA small subunit methyltransferase G VagYM4_30160 PF13932 GidA associated domain VagYM4_30160 PF01134 Glucose inhibited division protein A VagYM4_30170 PF00258 Flavodoxin VagYM4_30190 PF08448 PAS fold VagYM4_30190 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_30200 PF10509 Galactokinase galactose-binding signature VagYM4_30200 PF00288 GHMP kinases N terminal domain VagYM4_30200 PF08544 GHMP kinases C terminal VagYM4_30210 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VagYM4_30210 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VagYM4_30220 PF16363 GDP-mannose 4,6 dehydratase VagYM4_30230 PF00474 Sodium:solute symporter family VagYM4_30240 PF16874 Glycosyl hydrolase family 36 C-terminal domain VagYM4_30240 PF16875 Glycosyl hydrolase family 36 N-terminal domain VagYM4_30250 PF00356 Bacterial regulatory proteins, lacI family VagYM4_30460 PF02899 Phage integrase, N-terminal SAM-like domain VagYM4_30460 PF00589 Phage integrase family VagYM4_30470 PF12631 MnmE helical domain VagYM4_30470 PF01926 50S ribosome-binding GTPase VagYM4_30470 PF10396 GTP-binding protein TrmE N-terminus VagYM4_30480 PF14849 YidC periplasmic domain VagYM4_30480 PF02096 60Kd inner membrane protein VagYM4_30490 PF00825 Ribonuclease P VagYM4_30500 PF00468 Ribosomal protein L34 VagYM4_30510 PF00005 ABC transporter VagYM4_30520 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_30530 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_30560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_30560 PF00005 ABC transporter VagYM4_30570 PF00005 ABC transporter VagYM4_30570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_30590 PF08719 Domain of unknown function (DUF1768) VagYM4_30590 PF00925 GTP cyclohydrolase II VagYM4_30610 PF17149 Periplasmic sensor domain found in signal transduction proteins VagYM4_30610 PF00672 HAMP domain VagYM4_30610 PF00072 Response regulator receiver domain VagYM4_30610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_30610 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_30610 PF01627 Hpt domain VagYM4_30630 PF01709 Transcriptional regulator VagYM4_30640 PF01098 Cell cycle protein VagYM4_30660 PF00005 ABC transporter VagYM4_30700 PF07694 5TMR of 5TMR-LYT VagYM4_30700 PF06580 Histidine kinase VagYM4_30700 PF13492 GAF domain VagYM4_30700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_30710 PF00072 Response regulator receiver domain VagYM4_30710 PF04397 LytTr DNA-binding domain VagYM4_30730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VagYM4_30740 PF17200 Single Cache domain 2 VagYM4_30740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_30740 PF00672 HAMP domain VagYM4_30770 PF03616 Sodium/glutamate symporter VagYM4_30790 PF00005 ABC transporter VagYM4_30800 PF00392 Bacterial regulatory proteins, gntR family VagYM4_30800 PF00155 Aminotransferase class I and II VagYM4_30810 PF03616 Sodium/glutamate symporter VagYM4_30830 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VagYM4_30860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_30860 PF03466 LysR substrate binding domain VagYM4_30870 PF17954 Quercetinase C-terminal cupin domain VagYM4_30870 PF02678 Pirin VagYM4_30880 PF07681 DoxX VagYM4_30900 PF00730 HhH-GPD superfamily base excision DNA repair protein VagYM4_30900 PF06029 AlkA N-terminal domain VagYM4_30910 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VagYM4_30910 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VagYM4_30930 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VagYM4_30950 PF03600 Citrate transporter VagYM4_30990 PF12697 Alpha/beta hydrolase family VagYM4_31000 PF08329 Chitinase A, N-terminal domain VagYM4_31000 PF00704 Glycosyl hydrolases family 18 VagYM4_31020 PF06865 Pyrimidine/purine nucleoside phosphorylase VagYM4_31040 PF03707 Bacterial signalling protein N terminal repeat VagYM4_31040 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_31040 PF00563 EAL domain VagYM4_31050 PF01554 MatE VagYM4_31060 PF00849 RNA pseudouridylate synthase VagYM4_31090 PF03466 LysR substrate binding domain VagYM4_31090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_31120 PF17152 Periplasmic sensor domain VagYM4_31120 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_31140 PF00756 Putative esterase VagYM4_31150 PF08240 Alcohol dehydrogenase GroES-like domain VagYM4_31150 PF00107 Zinc-binding dehydrogenase VagYM4_31160 PF00797 N-acetyltransferase VagYM4_31170 PF03466 LysR substrate binding domain VagYM4_31170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_31180 PF08021 Siderophore-interacting FAD-binding domain VagYM4_31180 PF04954 Siderophore-interacting protein VagYM4_31190 PF00326 Prolyl oligopeptidase family VagYM4_31200 PF01810 LysE type translocator VagYM4_31210 PF01037 Lrp/AsnC ligand binding domain VagYM4_31220 PF18416 N-acetylglucosamine binding protein domain 2 VagYM4_31220 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VagYM4_31250 PF13599 Pentapeptide repeats (9 copies) VagYM4_31260 PF03922 OmpW family VagYM4_31270 PF13533 Biotin-lipoyl like VagYM4_31280 PF07690 Major Facilitator Superfamily VagYM4_31300 PF12706 Beta-lactamase superfamily domain VagYM4_31320 PF01204 Trehalase VagYM4_31330 PF01661 Macro domain VagYM4_31340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM4_31350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_31350 PF03466 LysR substrate binding domain VagYM4_31370 PF03466 LysR substrate binding domain VagYM4_31370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_31400 PF13419 Haloacid dehalogenase-like hydrolase VagYM4_31450 PF05651 Putative sugar diacid recognition VagYM4_31450 PF17853 GGDEF-like domain VagYM4_31450 PF13556 PucR C-terminal helix-turn-helix domain VagYM4_31460 PF02447 GntP family permease VagYM4_31470 PF02595 Glycerate kinase family VagYM4_31480 PF00392 Bacterial regulatory proteins, gntR family VagYM4_31480 PF00155 Aminotransferase class I and II VagYM4_31520 PF00583 Acetyltransferase (GNAT) family VagYM4_31560 PF13302 Acetyltransferase (GNAT) domain VagYM4_31570 PF03264 NapC/NirT cytochrome c family, N-terminal region VagYM4_31580 PF01568 Molydopterin dinucleotide binding domain VagYM4_31580 PF18364 Molybdopterin oxidoreductase N-terminal domain VagYM4_31580 PF00384 Molybdopterin oxidoreductase VagYM4_31600 PF02581 Thiamine monophosphate synthase VagYM4_31610 PF02110 Hydroxyethylthiazole kinase family VagYM4_31620 PF03070 TENA/THI-4/PQQC family VagYM4_31630 PF09084 NMT1/THI5 like VagYM4_31640 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_31650 PF00005 ABC transporter VagYM4_31660 PF08543 Phosphomethylpyrimidine kinase VagYM4_31670 PF01523 Putative modulator of DNA gyrase VagYM4_31680 PF01523 Putative modulator of DNA gyrase VagYM4_31690 PF04013 Putative SAM-dependent RNA methyltransferase VagYM4_31730 PF10928 Protein of unknown function (DUF2810) VagYM4_31740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VagYM4_31740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VagYM4_31760 PF03009 Glycerophosphoryl diester phosphodiesterase family VagYM4_31770 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VagYM4_31770 PF00056 lactate/malate dehydrogenase, NAD binding domain VagYM4_31780 PF00486 Transcriptional regulatory protein, C terminal VagYM4_31780 PF00072 Response regulator receiver domain VagYM4_31790 PF16750 Sensor domain of 2-component histidine kinase VagYM4_31790 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_31790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_31790 PF00672 HAMP domain VagYM4_31800 PF00593 TonB dependent receptor VagYM4_31800 PF07715 TonB-dependent Receptor Plug Domain VagYM4_31820 PF01618 MotA/TolQ/ExbB proton channel family VagYM4_31830 PF01618 MotA/TolQ/ExbB proton channel family VagYM4_31840 PF02472 Biopolymer transport protein ExbD/TolR VagYM4_31930 PF01297 Zinc-uptake complex component A periplasmic VagYM4_31940 PF00005 ABC transporter VagYM4_31950 PF00950 ABC 3 transport family VagYM4_31980 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VagYM4_31980 PF00326 Prolyl oligopeptidase family VagYM4_31990 PF07690 Major Facilitator Superfamily VagYM4_32000 PF00491 Arginase family VagYM4_32010 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VagYM4_32010 PF17810 Arginine decarboxylase helical bundle domain VagYM4_32010 PF17944 Arginine decarboxylase C-terminal helical extension VagYM4_32020 PF00753 Metallo-beta-lactamase superfamily VagYM4_32030 PF08443 RimK-like ATP-grasp domain VagYM4_32030 PF18030 RimK PreATP-grasp domain VagYM4_32040 PF08443 RimK-like ATP-grasp domain VagYM4_32040 PF18030 RimK PreATP-grasp domain VagYM4_32050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_32050 PF03466 LysR substrate binding domain VagYM4_32100 PF00232 Glycosyl hydrolase family 1 VagYM4_32120 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_32120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_32130 PF02954 Bacterial regulatory protein, Fis family VagYM4_32130 PF00072 Response regulator receiver domain VagYM4_32130 PF00158 Sigma-54 interaction domain VagYM4_32140 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_32150 PF05525 Branched-chain amino acid transport protein VagYM4_32180 PF01266 FAD dependent oxidoreductase VagYM4_32200 PF02322 Cytochrome bd terminal oxidase subunit II VagYM4_32210 PF01654 Cytochrome bd terminal oxidase subunit I VagYM4_32220 PF03116 NQR2, RnfD, RnfE family VagYM4_32230 PF01212 Beta-eliminating lyase VagYM4_32250 PF01773 Na+ dependent nucleoside transporter N-terminus VagYM4_32250 PF07670 Nucleoside recognition VagYM4_32250 PF07662 Na+ dependent nucleoside transporter C-terminus VagYM4_32280 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_32280 PF05230 MASE2 domain VagYM4_32310 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_32320 PF03441 FAD binding domain of DNA photolyase VagYM4_32320 PF00875 DNA photolyase VagYM4_32330 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VagYM4_32350 PF01641 SelR domain VagYM4_32350 PF01625 Peptide methionine sulfoxide reductase VagYM4_32360 PF02566 OsmC-like protein VagYM4_32370 PF12464 Maltose acetyltransferase VagYM4_32370 PF14602 Hexapeptide repeat of succinyl-transferase VagYM4_32440 PF03466 LysR substrate binding domain VagYM4_32440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_32450 PF13419 Haloacid dehalogenase-like hydrolase VagYM4_32480 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VagYM4_32490 PF00194 Eukaryotic-type carbonic anhydrase VagYM4_32500 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_32510 PF00657 GDSL-like Lipase/Acylhydrolase VagYM4_32520 PF00082 Subtilase family VagYM4_32520 PF05922 Peptidase inhibitor I9 VagYM4_32540 PF03611 PTS system sugar-specific permease component VagYM4_32560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM4_32570 PF00356 Bacterial regulatory proteins, lacI family VagYM4_32580 PF13419 Haloacid dehalogenase-like hydrolase VagYM4_32600 PF00266 Aminotransferase class-V VagYM4_32620 PF00005 ABC transporter VagYM4_32630 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_32640 PF00392 Bacterial regulatory proteins, gntR family VagYM4_32640 PF07702 UTRA domain VagYM4_32670 PF04393 Protein of unknown function (DUF535) VagYM4_32690 PF01266 FAD dependent oxidoreductase VagYM4_32700 PF00246 Zinc carboxypeptidase VagYM4_32700 PF18027 Cytosolic carboxypeptidase N-terminal domain VagYM4_32710 PF00691 OmpA family VagYM4_32710 PF01389 OmpA-like transmembrane domain VagYM4_32720 PF03466 LysR substrate binding domain VagYM4_32720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_32740 PF03466 LysR substrate binding domain VagYM4_32740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_32760 PF00854 POT family VagYM4_32770 PF03313 Serine dehydratase alpha chain VagYM4_32770 PF03315 Serine dehydratase beta chain VagYM4_32810 PF08264 Anticodon-binding domain of tRNA VagYM4_32810 PF00133 tRNA synthetases class I (I, L, M and V) VagYM4_32820 PF01464 Transglycosylase SLT domain VagYM4_32860 PF00460 Flagella basal body rod protein VagYM4_32870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_32870 PF00460 Flagella basal body rod protein VagYM4_32880 PF13860 FlgD Ig-like domain VagYM4_32880 PF03963 Flagellar hook capping protein - N-terminal region VagYM4_32880 PF13861 FlgD Tudor-like domain VagYM4_32890 PF07559 Flagellar basal body protein FlaE VagYM4_32890 PF00460 Flagella basal body rod protein VagYM4_32890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_32900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_32900 PF00460 Flagella basal body rod protein VagYM4_32910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_32910 PF00460 Flagella basal body rod protein VagYM4_32920 PF02107 Flagellar L-ring protein VagYM4_32930 PF02119 Flagellar P-ring protein VagYM4_32940 PF10135 Rod binding protein VagYM4_32940 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VagYM4_32950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VagYM4_32950 PF00460 Flagella basal body rod protein VagYM4_32960 PF00669 Bacterial flagellin N-terminal helical region VagYM4_33000 PF01070 FMN-dependent dehydrogenase VagYM4_33030 PF00581 Rhodanese-like domain VagYM4_33040 PF00166 Chaperonin 10 Kd subunit VagYM4_33050 PF00118 TCP-1/cpn60 chaperonin family VagYM4_33080 PF01810 LysE type translocator VagYM4_33090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_33090 PF03466 LysR substrate binding domain VagYM4_33120 PF08359 YsiA-like protein, C-terminal region VagYM4_33120 PF00440 Bacterial regulatory proteins, tetR family VagYM4_33130 PF12833 Helix-turn-helix domain VagYM4_33140 PF06751 Ethanolamine ammonia lyase large subunit (EutB) VagYM4_33150 PF05985 Ethanolamine ammonia-lyase light chain (EutC) VagYM4_33160 PF13520 Amino acid permease VagYM4_33170 PF03060 Nitronate monooxygenase VagYM4_33180 PF07971 Glycosyl hydrolase family 92 VagYM4_33180 PF17678 Glycosyl hydrolase family 92 N-terminal domain VagYM4_33190 PF17678 Glycosyl hydrolase family 92 N-terminal domain VagYM4_33190 PF07971 Glycosyl hydrolase family 92 VagYM4_33210 PF07971 Glycosyl hydrolase family 92 VagYM4_33210 PF17678 Glycosyl hydrolase family 92 N-terminal domain VagYM4_33220 PF17678 Glycosyl hydrolase family 92 N-terminal domain VagYM4_33220 PF07971 Glycosyl hydrolase family 92 VagYM4_33250 PF01625 Peptide methionine sulfoxide reductase VagYM4_33250 PF01641 SelR domain VagYM4_33260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM4_33270 PF08220 DeoR-like helix-turn-helix domain VagYM4_33270 PF00455 DeoR C terminal sensor domain VagYM4_33290 PF00857 Isochorismatase family VagYM4_33310 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VagYM4_33310 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VagYM4_33360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_33360 PF03466 LysR substrate binding domain VagYM4_33390 PF06629 MltA-interacting protein MipA VagYM4_33400 PF04170 NlpE N-terminal domain VagYM4_33400 PF17185 NlpE C-terminal OB domain VagYM4_33410 PF00005 ABC transporter VagYM4_33410 PF00571 CBS domain VagYM4_33420 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_33430 PF02001 Protein of unknown function DUF134 VagYM4_33480 PF14492 Elongation Factor G, domain II VagYM4_33480 PF00679 Elongation factor G C-terminus VagYM4_33480 PF00009 Elongation factor Tu GTP binding domain VagYM4_33480 PF03144 Elongation factor Tu domain 2 VagYM4_33480 PF03764 Elongation factor G, domain IV VagYM4_33490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VagYM4_33490 PF13378 Enolase C-terminal domain-like VagYM4_33510 PF03466 LysR substrate binding domain VagYM4_33510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_33530 PF09278 MerR, DNA binding VagYM4_33530 PF00376 MerR family regulatory protein VagYM4_33580 PF13091 PLD-like domain VagYM4_33600 PF00873 AcrB/AcrD/AcrF family VagYM4_33650 PF00005 ABC transporter VagYM4_33650 PF08402 TOBE domain VagYM4_33700 PF07702 UTRA domain VagYM4_33700 PF00392 Bacterial regulatory proteins, gntR family VagYM4_33710 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM4_33730 PF00703 Glycosyl hydrolases family 2 VagYM4_33730 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VagYM4_33730 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VagYM4_33730 PF02837 Glycosyl hydrolases family 2, sugar binding domain VagYM4_33760 PF00873 AcrB/AcrD/AcrF family VagYM4_33770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_33780 PF03466 LysR substrate binding domain VagYM4_33780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_33800 PF00579 tRNA synthetases class I (W and Y) VagYM4_33810 PF00072 Response regulator receiver domain VagYM4_33810 PF00196 Bacterial regulatory proteins, luxR family VagYM4_33830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VagYM4_33830 PF02896 PEP-utilising enzyme, TIM barrel domain VagYM4_33830 PF00391 PEP-utilising enzyme, mobile domain VagYM4_33840 PF03618 Kinase/pyrophosphorylase VagYM4_33850 PF00710 Asparaginase, N-terminal VagYM4_33850 PF17763 Glutaminase/Asparaginase C-terminal domain VagYM4_33870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_33870 PF03466 LysR substrate binding domain VagYM4_33890 PF01810 LysE type translocator VagYM4_33900 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VagYM4_33920 PF02423 Ornithine cyclodeaminase/mu-crystallin family VagYM4_33930 PF00291 Pyridoxal-phosphate dependent enzyme VagYM4_33940 PF00202 Aminotransferase class-III VagYM4_33950 PF00171 Aldehyde dehydrogenase family VagYM4_33960 PF01037 Lrp/AsnC ligand binding domain VagYM4_33970 PF03480 Bacterial extracellular solute-binding protein, family 7 VagYM4_33980 PF03480 Bacterial extracellular solute-binding protein, family 7 VagYM4_33990 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VagYM4_34000 PF01321 Creatinase/Prolidase N-terminal domain VagYM4_34000 PF00557 Metallopeptidase family M24 VagYM4_34010 PF00155 Aminotransferase class I and II VagYM4_34010 PF00392 Bacterial regulatory proteins, gntR family VagYM4_34020 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VagYM4_34030 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VagYM4_34040 PF12833 Helix-turn-helix domain VagYM4_34070 PF00107 Zinc-binding dehydrogenase VagYM4_34070 PF08240 Alcohol dehydrogenase GroES-like domain VagYM4_34080 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM4_34100 PF03466 LysR substrate binding domain VagYM4_34100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_34110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_34110 PF03466 LysR substrate binding domain VagYM4_34130 PF00271 Helicase conserved C-terminal domain VagYM4_34130 PF00270 DEAD/DEAH box helicase VagYM4_34170 PF00155 Aminotransferase class I and II VagYM4_34180 PF12833 Helix-turn-helix domain VagYM4_34180 PF01497 Periplasmic binding protein VagYM4_34300 PF11471 Maltoporin periplasmic N-terminal extension VagYM4_34300 PF02264 LamB porin VagYM4_34310 PF00356 Bacterial regulatory proteins, lacI family VagYM4_34320 PF00367 phosphotransferase system, EIIB VagYM4_34320 PF02378 Phosphotransferase system, EIIC VagYM4_34330 PF00294 pfkB family carbohydrate kinase VagYM4_34340 PF08244 Glycosyl hydrolases family 32 C terminal VagYM4_34340 PF00251 Glycosyl hydrolases family 32 N-terminal domain VagYM4_34350 PF02798 Glutathione S-transferase, N-terminal domain VagYM4_34370 PF07943 Penicillin-binding protein 5, C-terminal domain VagYM4_34370 PF00768 D-alanyl-D-alanine carboxypeptidase VagYM4_34400 PF00462 Glutaredoxin VagYM4_34400 PF08534 Redoxin VagYM4_34410 PF00962 Adenosine/AMP deaminase VagYM4_34420 PF00962 Adenosine/AMP deaminase VagYM4_34450 PF00313 'Cold-shock' DNA-binding domain VagYM4_34460 PF05726 Pirin C-terminal cupin domain VagYM4_34460 PF02678 Pirin VagYM4_34470 PF01734 Patatin-like phospholipase VagYM4_34510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VagYM4_34520 PF00884 Sulfatase VagYM4_34520 PF08019 Phosphoethanolamine transferase EptA/EptB VagYM4_34530 PF01219 Prokaryotic diacylglycerol kinase VagYM4_34550 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_34550 PF00672 HAMP domain VagYM4_34550 PF16527 Two-component sensor protein CpxA, periplasmic domain VagYM4_34550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_34560 PF00072 Response regulator receiver domain VagYM4_34560 PF00486 Transcriptional regulatory protein, C terminal VagYM4_34590 PF01323 DSBA-like thioredoxin domain VagYM4_34620 PF00255 Glutathione peroxidase VagYM4_34630 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VagYM4_34650 PF07690 Major Facilitator Superfamily VagYM4_34670 PF01966 HD domain VagYM4_34680 PF07969 Amidohydrolase family VagYM4_34690 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VagYM4_34700 PF01769 Divalent cation transporter VagYM4_34700 PF00571 CBS domain VagYM4_34700 PF03448 MgtE intracellular N domain VagYM4_34710 PF03109 ABC1 family VagYM4_34720 PF00529 HlyD membrane-fusion protein of T1SS VagYM4_34720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_34770 PF00072 Response regulator receiver domain VagYM4_34770 PF00486 Transcriptional regulatory protein, C terminal VagYM4_34780 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_34780 PF00672 HAMP domain VagYM4_34780 PF16527 Two-component sensor protein CpxA, periplasmic domain VagYM4_34780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_34800 PF00155 Aminotransferase class I and II VagYM4_34800 PF00392 Bacterial regulatory proteins, gntR family VagYM4_34810 PF13520 Amino acid permease VagYM4_34830 PF03466 LysR substrate binding domain VagYM4_34830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_34870 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VagYM4_34870 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VagYM4_34880 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_34880 PF00672 HAMP domain VagYM4_34880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VagYM4_34880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_34880 PF00072 Response regulator receiver domain VagYM4_34880 PF01627 Hpt domain VagYM4_34890 PF01554 MatE VagYM4_34900 PF04363 Protein of unknown function (DUF496) VagYM4_34920 PF04337 Protein of unknown function, DUF480 VagYM4_34930 PF01541 GIY-YIG catalytic domain VagYM4_34940 PF13407 Periplasmic binding protein domain VagYM4_34950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_34950 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_34950 PF09308 LuxQ, periplasmic VagYM4_34950 PF00072 Response regulator receiver domain VagYM4_34970 PF00529 HlyD membrane-fusion protein of T1SS VagYM4_34970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_35010 PF01037 Lrp/AsnC ligand binding domain VagYM4_35060 PF07549 SecD/SecF GG Motif VagYM4_35060 PF13721 SecD export protein N-terminal TM region VagYM4_35060 PF02355 Protein export membrane protein VagYM4_35070 PF02355 Protein export membrane protein VagYM4_35070 PF07549 SecD/SecF GG Motif VagYM4_35090 PF01810 LysE type translocator VagYM4_35100 PF00106 short chain dehydrogenase VagYM4_35110 PF02803 Thiolase, C-terminal domain VagYM4_35110 PF00108 Thiolase, N-terminal domain VagYM4_35130 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VagYM4_35150 PF03264 NapC/NirT cytochrome c family, N-terminal region VagYM4_35160 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VagYM4_35170 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM4_35170 PF01568 Molydopterin dinucleotide binding domain VagYM4_35170 PF00384 Molybdopterin oxidoreductase VagYM4_35190 PF13187 4Fe-4S dicluster domain VagYM4_35190 PF12838 4Fe-4S dicluster domain VagYM4_35200 PF00672 HAMP domain VagYM4_35200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_35200 PF07730 Histidine kinase VagYM4_35200 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VagYM4_35210 PF00072 Response regulator receiver domain VagYM4_35210 PF00196 Bacterial regulatory proteins, luxR family VagYM4_35240 PF01546 Peptidase family M20/M25/M40 VagYM4_35240 PF07687 Peptidase dimerisation domain VagYM4_35250 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM4_35260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_35270 PF00873 AcrB/AcrD/AcrF family VagYM4_35280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_35280 PF00672 HAMP domain VagYM4_35280 PF17200 Single Cache domain 2 VagYM4_35290 PF00472 RF-1 domain VagYM4_35300 PF13419 Haloacid dehalogenase-like hydrolase VagYM4_35310 PF01389 OmpA-like transmembrane domain VagYM4_35310 PF00691 OmpA family VagYM4_35320 PF00793 DAHP synthetase I family VagYM4_35330 PF07690 Major Facilitator Superfamily VagYM4_35340 PF08447 PAS fold VagYM4_35340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_35350 PF02779 Transketolase, pyrimidine binding domain VagYM4_35350 PF00456 Transketolase, thiamine diphosphate binding domain VagYM4_35350 PF02780 Transketolase, C-terminal domain VagYM4_35360 PF00923 Transaldolase/Fructose-6-phosphate aldolase VagYM4_35380 PF08329 Chitinase A, N-terminal domain VagYM4_35380 PF00704 Glycosyl hydrolases family 18 VagYM4_35390 PF00563 EAL domain VagYM4_35390 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_35390 PF03707 Bacterial signalling protein N terminal repeat VagYM4_35400 PF00581 Rhodanese-like domain VagYM4_35440 PF00899 ThiF family VagYM4_35450 PF03453 MoeA N-terminal region (domain I and II) VagYM4_35450 PF03454 MoeA C-terminal region (domain IV) VagYM4_35450 PF00994 Probable molybdopterin binding domain VagYM4_35460 PF01227 GTP cyclohydrolase I VagYM4_35470 PF01566 Natural resistance-associated macrophage protein VagYM4_35490 PF00654 Voltage gated chloride channel VagYM4_35520 PF00248 Aldo/keto reductase family VagYM4_35530 PF00072 Response regulator receiver domain VagYM4_35550 PF01256 Carbohydrate kinase VagYM4_35550 PF03853 YjeF-related protein N-terminus VagYM4_35560 PF00478 IMP dehydrogenase / GMP reductase domain VagYM4_35570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM4_35580 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VagYM4_35580 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VagYM4_35580 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VagYM4_35590 PF03466 LysR substrate binding domain VagYM4_35590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_35600 PF01551 Peptidase family M23 VagYM4_35600 PF01476 LysM domain VagYM4_35600 PF08525 Opacity-associated protein A N-terminal motif VagYM4_35660 PF00158 Sigma-54 interaction domain VagYM4_35660 PF00072 Response regulator receiver domain VagYM4_35660 PF02954 Bacterial regulatory protein, Fis family VagYM4_35670 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_35670 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM4_35670 PF17871 AAA lid domain VagYM4_35670 PF07724 AAA domain (Cdc48 subfamily) VagYM4_35680 PF05638 Type VI secretion system effector, Hcp VagYM4_35690 PF04717 Type VI secretion system, phage-baseplate injector VagYM4_35740 PF00069 Protein kinase domain VagYM4_35810 PF01037 Lrp/AsnC ligand binding domain VagYM4_35940 PF02129 X-Pro dipeptidyl-peptidase (S15 family) VagYM4_35950 PF07690 Major Facilitator Superfamily VagYM4_35970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_35970 PF03466 LysR substrate binding domain VagYM4_35980 PF00106 short chain dehydrogenase VagYM4_35990 PF00582 Universal stress protein family VagYM4_36010 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VagYM4_36010 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter VagYM4_36010 PF00361 Proton-conducting membrane transporter VagYM4_36010 PF13244 Domain of unknown function (DUF4040) VagYM4_36050 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VagYM4_36060 PF03334 Na+/H+ antiporter subunit VagYM4_36070 PF00501 AMP-binding enzyme VagYM4_36070 PF13193 AMP-binding enzyme C-terminal domain VagYM4_36080 PF01012 Electron transfer flavoprotein domain VagYM4_36080 PF00766 Electron transfer flavoprotein FAD-binding domain VagYM4_36090 PF01012 Electron transfer flavoprotein domain VagYM4_36110 PF01348 Type II intron maturase VagYM4_36110 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VagYM4_36120 PF00005 ABC transporter VagYM4_36120 PF12399 Branched-chain amino acid ATP-binding cassette transporter VagYM4_36170 PF00005 ABC transporter VagYM4_36180 PF00501 AMP-binding enzyme VagYM4_36180 PF14535 AMP-binding enzyme C-terminal domain VagYM4_36200 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM4_36210 PF00106 short chain dehydrogenase VagYM4_36220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VagYM4_36220 PF00205 Thiamine pyrophosphate enzyme, central domain VagYM4_36220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VagYM4_36230 PF03306 Alpha-acetolactate decarboxylase VagYM4_36240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_36240 PF03466 LysR substrate binding domain VagYM4_36270 PF13195 Protein of unknown function (DUF4011) VagYM4_36270 PF13086 AAA domain VagYM4_36270 PF13086 AAA domain VagYM4_36270 PF13195 Protein of unknown function (DUF4011) VagYM4_36270 PF13087 AAA domain VagYM4_36270 PF13087 AAA domain VagYM4_36290 PF02567 Phenazine biosynthesis-like protein VagYM4_36310 PF02322 Cytochrome bd terminal oxidase subunit II VagYM4_36320 PF01654 Cytochrome bd terminal oxidase subunit I VagYM4_36330 PF00392 Bacterial regulatory proteins, gntR family VagYM4_36330 PF00155 Aminotransferase class I and II VagYM4_36370 PF00672 HAMP domain VagYM4_36370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VagYM4_36370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_36370 PF01627 Hpt domain VagYM4_36370 PF00072 Response regulator receiver domain VagYM4_36370 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_36380 PF00682 HMGL-like VagYM4_36390 PF18140 Propionyl-coenzyme A carboxylase BT domain VagYM4_36390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VagYM4_36390 PF00289 Biotin carboxylase, N-terminal domain VagYM4_36390 PF00364 Biotin-requiring enzyme VagYM4_36390 PF02785 Biotin carboxylase C-terminal domain VagYM4_36400 PF00378 Enoyl-CoA hydratase/isomerase VagYM4_36410 PF01039 Carboxyl transferase domain VagYM4_36420 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM4_36420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM4_36420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM4_36430 PF00376 MerR family regulatory protein VagYM4_36430 PF09278 MerR, DNA binding VagYM4_36440 PF02803 Thiolase, C-terminal domain VagYM4_36440 PF00108 Thiolase, N-terminal domain VagYM4_36450 PF00171 Aldehyde dehydrogenase family VagYM4_36460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM4_36460 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM4_36460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM4_36470 PF00378 Enoyl-CoA hydratase/isomerase VagYM4_36490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VagYM4_36490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VagYM4_36510 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_36510 PF00072 Response regulator receiver domain VagYM4_36520 PF13977 BetI-type transcriptional repressor, C-terminal VagYM4_36520 PF00440 Bacterial regulatory proteins, tetR family VagYM4_36530 PF00171 Aldehyde dehydrogenase family VagYM4_36540 PF00732 GMC oxidoreductase VagYM4_36540 PF05199 GMC oxidoreductase VagYM4_36550 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VagYM4_36560 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_36570 PF00571 CBS domain VagYM4_36570 PF00005 ABC transporter VagYM4_36580 PF00881 Nitroreductase family VagYM4_36600 PF01145 SPFH domain / Band 7 family VagYM4_36600 PF16200 C-terminal region of band_7 VagYM4_36630 PF03707 Bacterial signalling protein N terminal repeat VagYM4_36630 PF00563 EAL domain VagYM4_36630 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_36630 PF13188 PAS domain VagYM4_36650 PF03150 Di-haem cytochrome c peroxidase VagYM4_36650 PF00034 Cytochrome c VagYM4_36660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_36660 PF00072 Response regulator receiver domain VagYM4_36660 PF09308 LuxQ, periplasmic VagYM4_36660 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_36680 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VagYM4_36680 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain VagYM4_36700 PF04116 Fatty acid hydroxylase superfamily VagYM4_36770 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_36770 PF00563 EAL domain VagYM4_36780 PF05025 RbsD / FucU transport protein family VagYM4_36790 PF00005 ABC transporter VagYM4_36800 PF02653 Branched-chain amino acid transport system / permease component VagYM4_36810 PF13407 Periplasmic binding protein domain VagYM4_36820 PF00294 pfkB family carbohydrate kinase VagYM4_36830 PF00356 Bacterial regulatory proteins, lacI family VagYM4_36850 PF04973 Nicotinamide mononucleotide transporter VagYM4_36860 PF01048 Phosphorylase superfamily VagYM4_36880 PF01497 Periplasmic binding protein VagYM4_36890 PF01032 FecCD transport family VagYM4_36900 PF01032 FecCD transport family VagYM4_36910 PF00005 ABC transporter VagYM4_36920 PF13411 MerR HTH family regulatory protein VagYM4_36930 PF12833 Helix-turn-helix domain VagYM4_36940 PF00593 TonB dependent receptor VagYM4_36940 PF07715 TonB-dependent Receptor Plug Domain VagYM4_37000 PF12805 FUSC-like inner membrane protein yccS VagYM4_37010 PF00580 UvrD/REP helicase N-terminal domain VagYM4_37010 PF13361 UvrD-like helicase C-terminal domain VagYM4_37010 PF12462 DNA helicase IV / RNA helicase N terminal VagYM4_37020 PF02142 MGS-like domain VagYM4_37030 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VagYM4_37040 PF00072 Response regulator receiver domain VagYM4_37040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_37040 PF01627 Hpt domain VagYM4_37040 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_37040 PF00672 HAMP domain VagYM4_37070 PF00072 Response regulator receiver domain VagYM4_37070 PF00486 Transcriptional regulatory protein, C terminal VagYM4_37080 PF00884 Sulfatase VagYM4_37090 PF03466 LysR substrate binding domain VagYM4_37090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_37100 PF00884 Sulfatase VagYM4_37100 PF16385 Domain of unknown function VagYM4_37110 PF04055 Radical SAM superfamily VagYM4_37110 PF13186 Iron-sulfur cluster-binding domain VagYM4_37120 PF17863 AAA lid domain VagYM4_37120 PF07726 ATPase family associated with various cellular activities (AAA) VagYM4_37150 PF00092 von Willebrand factor type A domain VagYM4_37180 PF01872 RibD C-terminal domain VagYM4_37180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VagYM4_37190 PF03466 LysR substrate binding domain VagYM4_37190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_37200 PF00781 Diacylglycerol kinase catalytic domain VagYM4_37210 PF04076 Bacterial OB fold (BOF) protein VagYM4_37230 PF08774 VRR-NUC domain VagYM4_37230 PF18081 Fanconi anemia-associated nuclease SAP domain VagYM4_37270 PF01435 Peptidase family M48 VagYM4_37280 PF04011 LemA family VagYM4_37290 PF03606 C4-dicarboxylate anaerobic carrier VagYM4_37310 PF00814 Glycoprotease family VagYM4_37310 PF00583 Acetyltransferase (GNAT) family VagYM4_37330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_37330 PF00072 Response regulator receiver domain VagYM4_37340 PF00155 Aminotransferase class I and II VagYM4_37350 PF01926 50S ribosome-binding GTPase VagYM4_37360 PF03707 Bacterial signalling protein N terminal repeat VagYM4_37360 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_37360 PF00563 EAL domain VagYM4_37370 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_37370 PF08448 PAS fold VagYM4_37390 PF00072 Response regulator receiver domain VagYM4_37390 PF00196 Bacterial regulatory proteins, luxR family VagYM4_37400 PF01584 CheW-like domain VagYM4_37400 PF00072 Response regulator receiver domain VagYM4_37430 PF00892 EamA-like transporter family VagYM4_37470 PF02868 Thermolysin metallopeptidase, alpha-helical domain VagYM4_37470 PF01447 Thermolysin metallopeptidase, catalytic domain VagYM4_37470 PF03413 Peptidase propeptide and YPEB domain VagYM4_37470 PF07504 Fungalysin/Thermolysin Propeptide Motif VagYM4_37470 PF04151 Bacterial pre-peptidase C-terminal domain VagYM4_37480 PF00893 Small Multidrug Resistance protein VagYM4_37490 PF00892 EamA-like transporter family VagYM4_37520 PF00171 Aldehyde dehydrogenase family VagYM4_37530 PF00939 Sodium:sulfate symporter transmembrane region VagYM4_37540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_37540 PF00989 PAS fold VagYM4_37540 PF17203 Single cache domain 3 VagYM4_37540 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VagYM4_37550 PF12431 Transcriptional regulator VagYM4_37550 PF00072 Response regulator receiver domain VagYM4_37570 PF13187 4Fe-4S dicluster domain VagYM4_37570 PF01645 Conserved region in glutamate synthase VagYM4_37580 PF00141 Peroxidase VagYM4_37590 PF09722 Protein of unknown function (DUF2384) VagYM4_37610 PF01757 Acyltransferase family VagYM4_37630 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM4_37640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM4_37680 PF00571 CBS domain VagYM4_37680 PF03448 MgtE intracellular N domain VagYM4_37680 PF01769 Divalent cation transporter VagYM4_37720 PF01327 Polypeptide deformylase VagYM4_37730 PF00376 MerR family regulatory protein VagYM4_37730 PF09278 MerR, DNA binding VagYM4_37750 PF02253 Phospholipase A1 VagYM4_37790 PF00005 ABC transporter VagYM4_37790 PF00664 ABC transporter transmembrane region VagYM4_37800 PF00929 Exonuclease VagYM4_37800 PF02811 PHP domain VagYM4_37800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VagYM4_37800 PF14579 Helix-hairpin-helix motif VagYM4_37800 PF11490 DNA polymerase III polC-type N-terminus II VagYM4_37800 PF07733 Bacterial DNA polymerase III alpha NTPase domain VagYM4_37850 PF12833 Helix-turn-helix domain VagYM4_37860 PF02627 Carboxymuconolactone decarboxylase family VagYM4_37870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM4_37880 PF00665 Integrase core domain VagYM4_37890 PF01527 Transposase VagYM4_37910 PF00672 HAMP domain VagYM4_37910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_37910 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_37920 PF14532 Sigma-54 interaction domain VagYM4_37920 PF02954 Bacterial regulatory protein, Fis family VagYM4_37920 PF00072 Response regulator receiver domain VagYM4_37940 PF00465 Iron-containing alcohol dehydrogenase VagYM4_37950 PF12833 Helix-turn-helix domain VagYM4_37950 PF06719 AraC-type transcriptional regulator N-terminus VagYM4_37960 PF00704 Glycosyl hydrolases family 18 VagYM4_37960 PF06483 Chitinase C VagYM4_37970 PF00483 Nucleotidyl transferase VagYM4_37980 PF01268 Formate--tetrahydrofolate ligase VagYM4_37990 PF00294 pfkB family carbohydrate kinase VagYM4_38030 PF13419 Haloacid dehalogenase-like hydrolase VagYM4_38040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_38060 PF04336 Acyl carrier protein phosphodiesterase VagYM4_38070 PF00270 DEAD/DEAH box helicase VagYM4_38070 PF00271 Helicase conserved C-terminal domain VagYM4_38080 PF00563 EAL domain VagYM4_38080 PF12792 CSS motif domain associated with EAL VagYM4_38110 PF01292 Prokaryotic cytochrome b561 VagYM4_38120 PF04264 YceI-like domain VagYM4_38130 PF01226 Formate/nitrite transporter VagYM4_38140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_38140 PF03466 LysR substrate binding domain VagYM4_38150 PF06496 Protein of unknown function (DUF1097) VagYM4_38160 PF11398 Protein of unknown function (DUF2813) VagYM4_38170 PF02872 5'-nucleotidase, C-terminal domain VagYM4_38170 PF00149 Calcineurin-like phosphoesterase VagYM4_38190 PF03741 Integral membrane protein TerC family VagYM4_38230 PF12262 Bacterial virulence factor lipase N-terminal VagYM4_38240 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_38270 PF03061 Thioesterase superfamily VagYM4_38290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_38290 PF12793 Sugar transport-related sRNA regulator N-term VagYM4_38340 PF00684 DnaJ central domain VagYM4_38340 PF00226 DnaJ domain VagYM4_38340 PF01556 DnaJ C terminal domain VagYM4_38360 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_38360 PF00563 EAL domain VagYM4_38360 PF00498 FHA domain VagYM4_38370 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VagYM4_38370 PF12241 Trans-2-enoyl-CoA reductase catalytic region VagYM4_38370 PF07055 Enoyl reductase FAD binding domain VagYM4_38380 PF13472 GDSL-like Lipase/Acylhydrolase family VagYM4_38390 PF00005 ABC transporter VagYM4_38420 PF02626 Carboxyltransferase domain, subdomain A and B VagYM4_38430 PF02682 Carboxyltransferase domain, subdomain C and D VagYM4_38440 PF03746 LamB/YcsF family VagYM4_38450 PF08447 PAS fold VagYM4_38450 PF13426 PAS domain VagYM4_38450 PF08448 PAS fold VagYM4_38450 PF05231 MASE1 VagYM4_38450 PF00563 EAL domain VagYM4_38450 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_38460 PF16363 GDP-mannose 4,6 dehydratase VagYM4_38470 PF07715 TonB-dependent Receptor Plug Domain VagYM4_38470 PF04886 PT repeat VagYM4_38470 PF00593 TonB dependent receptor VagYM4_38480 PF03466 LysR substrate binding domain VagYM4_38480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_38490 PF13380 CoA binding domain VagYM4_38490 PF00583 Acetyltransferase (GNAT) family VagYM4_38490 PF13607 Succinyl-CoA ligase like flavodoxin domain VagYM4_38500 PF05036 Sporulation related domain VagYM4_38510 PF01820 D-ala D-ala ligase N-terminus VagYM4_38510 PF07478 D-ala D-ala ligase C-terminus VagYM4_38530 PF01253 Translation initiation factor SUI1 VagYM4_38550 PF05707 Zonular occludens toxin (Zot) VagYM4_38650 PF05707 Zonular occludens toxin (Zot) VagYM4_38770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_38770 PF03466 LysR substrate binding domain VagYM4_38790 PF00582 Universal stress protein family VagYM4_38800 PF03701 Uncharacterised protein family (UPF0181) VagYM4_38830 PF00072 Response regulator receiver domain VagYM4_38830 PF00486 Transcriptional regulatory protein, C terminal VagYM4_38850 PF02233 NAD(P) transhydrogenase beta subunit VagYM4_38860 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VagYM4_38860 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VagYM4_38860 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VagYM4_38890 PF00072 Response regulator receiver domain VagYM4_38890 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_38910 PF01590 GAF domain VagYM4_38910 PF00360 Phytochrome region VagYM4_38910 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_38910 PF00563 EAL domain VagYM4_38930 PF00005 ABC transporter VagYM4_38930 PF03459 TOBE domain VagYM4_38940 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_38960 PF07685 CobB/CobQ-like glutamine amidotransferase domain VagYM4_38960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VagYM4_38990 PF18030 RimK PreATP-grasp domain VagYM4_38990 PF08443 RimK-like ATP-grasp domain VagYM4_39000 PF00155 Aminotransferase class I and II VagYM4_39010 PF12852 Cupin VagYM4_39010 PF12833 Helix-turn-helix domain VagYM4_39020 PF01554 MatE VagYM4_39040 PF13597 Anaerobic ribonucleoside-triphosphate reductase VagYM4_39040 PF03477 ATP cone domain VagYM4_39060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_39070 PF00873 AcrB/AcrD/AcrF family VagYM4_39090 PF04143 Sulphur transport VagYM4_39120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VagYM4_39120 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_39130 PF01177 Asp/Glu/Hydantoin racemase VagYM4_39140 PF02567 Phenazine biosynthesis-like protein VagYM4_39160 PF00384 Molybdopterin oxidoreductase VagYM4_39170 PF03466 LysR substrate binding domain VagYM4_39170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_39180 PF02634 FdhD/NarQ family VagYM4_39190 PF07690 Major Facilitator Superfamily VagYM4_39200 PF00072 Response regulator receiver domain VagYM4_39200 PF00196 Bacterial regulatory proteins, luxR family VagYM4_39210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_39210 PF07730 Histidine kinase VagYM4_39210 PF05231 MASE1 VagYM4_39220 PF07690 Major Facilitator Superfamily VagYM4_39230 PF01238 Phosphomannose isomerase type I VagYM4_39270 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VagYM4_39270 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VagYM4_39280 PF00085 Thioredoxin VagYM4_39290 PF07690 Major Facilitator Superfamily VagYM4_39300 PF11756 Nitrous oxide-stimulated promoter VagYM4_39330 PF07715 TonB-dependent Receptor Plug Domain VagYM4_39330 PF00593 TonB dependent receptor VagYM4_39350 PF03605 Anaerobic c4-dicarboxylate membrane transporter VagYM4_39380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM4_39380 PF14824 Sirohaem biosynthesis protein central VagYM4_39380 PF10414 Sirohaem synthase dimerisation region VagYM4_39390 PF01226 Formate/nitrite transporter VagYM4_39400 PF13806 Rieske-like [2Fe-2S] domain VagYM4_39410 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VagYM4_39410 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_39410 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VagYM4_39410 PF04324 BFD-like [2Fe-2S] binding domain VagYM4_39410 PF18267 Rubredoxin NAD+ reductase C-terminal domain VagYM4_39420 PF01272 Transcription elongation factor, GreA/GreB, C-term VagYM4_39420 PF14760 Rnk N-terminus VagYM4_39430 PF00563 EAL domain VagYM4_39430 PF13426 PAS domain VagYM4_39430 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_39510 PF00128 Alpha amylase, catalytic domain VagYM4_39510 PF09154 Domain of unknown function (DUF1939) VagYM4_39520 PF00672 HAMP domain VagYM4_39520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_39530 PF00842 Alanine racemase, C-terminal domain VagYM4_39530 PF01168 Alanine racemase, N-terminal domain VagYM4_39560 PF03466 LysR substrate binding domain VagYM4_39560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_39570 PF14031 Putative serine dehydratase domain VagYM4_39570 PF01168 Alanine racemase, N-terminal domain VagYM4_39580 PF02423 Ornithine cyclodeaminase/mu-crystallin family VagYM4_39600 PF09330 D-lactate dehydrogenase, membrane binding VagYM4_39600 PF01565 FAD binding domain VagYM4_39610 PF03466 LysR substrate binding domain VagYM4_39610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_39620 PF05762 VWA domain containing CoxE-like protein VagYM4_39630 PF17868 AAA lid domain VagYM4_39630 PF12592 Protein of unknown function (DUF3763) VagYM4_39630 PF07728 AAA domain (dynein-related subfamily) VagYM4_39650 PF01212 Beta-eliminating lyase VagYM4_39660 PF00034 Cytochrome c VagYM4_39670 PF03606 C4-dicarboxylate anaerobic carrier VagYM4_39690 PF08212 Lipocalin-like domain VagYM4_39710 PF13476 AAA domain VagYM4_39720 PF00149 Calcineurin-like phosphoesterase VagYM4_39720 PF12320 Type 5 capsule protein repressor C-terminal domain VagYM4_39750 PF16671 Actin cross-linking domain VagYM4_39750 PF04717 Type VI secretion system, phage-baseplate injector VagYM4_39770 PF00004 ATPase family associated with various cellular activities (AAA) VagYM4_39770 PF07724 AAA domain (Cdc48 subfamily) VagYM4_39770 PF17871 AAA lid domain VagYM4_39770 PF10431 C-terminal, D2-small domain, of ClpB protein VagYM4_39890 PF13677 Membrane MotB of proton-channel complex MotA/MotB VagYM4_39890 PF00691 OmpA family VagYM4_39930 PF00069 Protein kinase domain VagYM4_39930 PF03793 PASTA domain VagYM4_39970 PF00486 Transcriptional regulatory protein, C terminal VagYM4_39970 PF00072 Response regulator receiver domain VagYM4_39990 PF00043 Glutathione S-transferase, C-terminal domain VagYM4_39990 PF13417 Glutathione S-transferase, N-terminal domain VagYM4_40000 PF00440 Bacterial regulatory proteins, tetR family VagYM4_40000 PF08361 MAATS-type transcriptional repressor, C-terminal region VagYM4_40030 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VagYM4_40030 PF18267 Rubredoxin NAD+ reductase C-terminal domain VagYM4_40030 PF13806 Rieske-like [2Fe-2S] domain VagYM4_40030 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VagYM4_40030 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_40030 PF04324 BFD-like [2Fe-2S] binding domain VagYM4_40040 PF00005 ABC transporter VagYM4_40050 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_40060 PF00005 ABC transporter VagYM4_40070 PF00072 Response regulator receiver domain VagYM4_40070 PF03861 ANTAR domain VagYM4_40080 PF01738 Dienelactone hydrolase family VagYM4_40090 PF02885 Glycosyl transferase family, helical bundle domain VagYM4_40090 PF00591 Glycosyl transferase family, a/b domain VagYM4_40100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VagYM4_40100 PF14824 Sirohaem biosynthesis protein central VagYM4_40100 PF10414 Sirohaem synthase dimerisation region VagYM4_40110 PF01568 Molydopterin dinucleotide binding domain VagYM4_40110 PF00384 Molybdopterin oxidoreductase VagYM4_40110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM4_40130 PF03222 Tryptophan/tyrosine permease family VagYM4_40150 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_40150 PF07694 5TMR of 5TMR-LYT VagYM4_40170 PF01483 Proprotein convertase P-domain VagYM4_40170 PF00082 Subtilase family VagYM4_40210 PF00072 Response regulator receiver domain VagYM4_40210 PF00486 Transcriptional regulatory protein, C terminal VagYM4_40250 PF04314 Copper chaperone PCu(A)C VagYM4_40260 PF00012 Hsp70 protein VagYM4_40290 PF00676 Dehydrogenase E1 component VagYM4_40300 PF02780 Transketolase, C-terminal domain VagYM4_40300 PF02779 Transketolase, pyrimidine binding domain VagYM4_40310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VagYM4_40310 PF00364 Biotin-requiring enzyme VagYM4_40310 PF02817 e3 binding domain VagYM4_40320 PF00766 Electron transfer flavoprotein FAD-binding domain VagYM4_40320 PF01012 Electron transfer flavoprotein domain VagYM4_40360 PF01389 OmpA-like transmembrane domain VagYM4_40360 PF00691 OmpA family VagYM4_40390 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_40400 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_40410 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_40420 PF00005 ABC transporter VagYM4_40480 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM4_40500 PF00171 Aldehyde dehydrogenase family VagYM4_40530 PF08031 Berberine and berberine like VagYM4_40530 PF01565 FAD binding domain VagYM4_40540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VagYM4_40540 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_40560 PF01040 UbiA prenyltransferase family VagYM4_40580 PF00510 Cytochrome c oxidase subunit III VagYM4_40590 PF00115 Cytochrome C and Quinol oxidase polypeptide I VagYM4_40600 PF06481 COX Aromatic Rich Motif VagYM4_40600 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VagYM4_40620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VagYM4_40620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VagYM4_40630 PF00378 Enoyl-CoA hydratase/isomerase VagYM4_40640 PF00378 Enoyl-CoA hydratase/isomerase VagYM4_40650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM4_40650 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM4_40650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM4_40660 PF00171 Aldehyde dehydrogenase family VagYM4_40670 PF02803 Thiolase, C-terminal domain VagYM4_40670 PF00108 Thiolase, N-terminal domain VagYM4_40680 PF00376 MerR family regulatory protein VagYM4_40680 PF09278 MerR, DNA binding VagYM4_40690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VagYM4_40690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VagYM4_40690 PF02770 Acyl-CoA dehydrogenase, middle domain VagYM4_40700 PF01039 Carboxyl transferase domain VagYM4_40710 PF00378 Enoyl-CoA hydratase/isomerase VagYM4_40720 PF00682 HMGL-like VagYM4_40730 PF10063 Uncharacterized integral membrane protein (DUF2301) VagYM4_40750 PF13183 4Fe-4S dicluster domain VagYM4_40750 PF01565 FAD binding domain VagYM4_40750 PF02913 FAD linked oxidases, C-terminal domain VagYM4_40760 PF04909 Amidohydrolase VagYM4_40770 PF00561 alpha/beta hydrolase fold VagYM4_40780 PF01965 DJ-1/PfpI family VagYM4_40780 PF12833 Helix-turn-helix domain VagYM4_40810 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VagYM4_40820 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_40830 PF00571 CBS domain VagYM4_40830 PF00005 ABC transporter VagYM4_40840 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_40850 PF08447 PAS fold VagYM4_40850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_40850 PF13426 PAS domain VagYM4_40860 PF00871 Acetokinase family VagYM4_40870 PF03707 Bacterial signalling protein N terminal repeat VagYM4_40870 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_40870 PF00563 EAL domain VagYM4_40880 PF00271 Helicase conserved C-terminal domain VagYM4_40880 PF00270 DEAD/DEAH box helicase VagYM4_40880 PF03880 DbpA RNA binding domain VagYM4_40890 PF08206 Ribonuclease B OB domain VagYM4_40890 PF00773 RNB domain VagYM4_40890 PF00575 S1 RNA binding domain VagYM4_40900 PF12833 Helix-turn-helix domain VagYM4_40920 PF12849 PBP superfamily domain VagYM4_40930 PF01575 MaoC like domain VagYM4_40940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_40940 PF08447 PAS fold VagYM4_40950 PF00005 ABC transporter VagYM4_40960 PF12792 CSS motif domain associated with EAL VagYM4_40960 PF00563 EAL domain VagYM4_41010 PF00270 DEAD/DEAH box helicase VagYM4_41010 PF00271 Helicase conserved C-terminal domain VagYM4_41020 PF07683 Cobalamin synthesis protein cobW C-terminal domain VagYM4_41020 PF02492 CobW/HypB/UreG, nucleotide-binding domain VagYM4_41040 PF01470 Pyroglutamyl peptidase VagYM4_41060 PF00313 'Cold-shock' DNA-binding domain VagYM4_41070 PF08461 Ribonuclease R winged-helix domain VagYM4_41070 PF17876 Cold shock domain VagYM4_41070 PF08206 Ribonuclease B OB domain VagYM4_41070 PF00773 RNB domain VagYM4_41070 PF00575 S1 RNA binding domain VagYM4_41080 PF00291 Pyridoxal-phosphate dependent enzyme VagYM4_41100 PF09905 DNA-binding protein VF530 VagYM4_41110 PF00271 Helicase conserved C-terminal domain VagYM4_41110 PF00270 DEAD/DEAH box helicase VagYM4_41130 PF01925 Sulfite exporter TauE/SafE VagYM4_41150 PF03466 LysR substrate binding domain VagYM4_41150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_41160 PF00892 EamA-like transporter family VagYM4_41170 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VagYM4_41170 PF01276 Orn/Lys/Arg decarboxylase, major domain VagYM4_41180 PF00857 Isochorismatase family VagYM4_41200 PF00082 Subtilase family VagYM4_41200 PF05922 Peptidase inhibitor I9 VagYM4_41200 PF04151 Bacterial pre-peptidase C-terminal domain VagYM4_41230 PF12843 Putative quorum-sensing-regulated virulence factor VagYM4_41270 PF01329 Pterin 4 alpha carbinolamine dehydratase VagYM4_41280 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VagYM4_41290 PF00501 AMP-binding enzyme VagYM4_41290 PF13193 AMP-binding enzyme C-terminal domain VagYM4_41310 PF03466 LysR substrate binding domain VagYM4_41310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_41330 PF00892 EamA-like transporter family VagYM4_41360 PF00465 Iron-containing alcohol dehydrogenase VagYM4_41370 PF07995 Glucose / Sorbosone dehydrogenase VagYM4_41390 PF00210 Ferritin-like domain VagYM4_41400 PF17200 Single Cache domain 2 VagYM4_41400 PF00672 HAMP domain VagYM4_41400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_41420 PF12704 MacB-like periplasmic core domain VagYM4_41420 PF00005 ABC transporter VagYM4_41420 PF02687 FtsX-like permease family VagYM4_41430 PF02687 FtsX-like permease family VagYM4_41430 PF00005 ABC transporter VagYM4_41430 PF12704 MacB-like periplasmic core domain VagYM4_41460 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_41470 PF03889 Alternative ribosome-rescue factor A VagYM4_41480 PF00313 'Cold-shock' DNA-binding domain VagYM4_41520 PF00691 OmpA family VagYM4_41520 PF13488 Glycine zipper VagYM4_41540 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VagYM4_41540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VagYM4_41550 PF01040 UbiA prenyltransferase family VagYM4_41560 PF02628 Cytochrome oxidase assembly protein VagYM4_41590 PF00510 Cytochrome c oxidase subunit III VagYM4_41600 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VagYM4_41610 PF00115 Cytochrome C and Quinol oxidase polypeptide I VagYM4_41620 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VagYM4_41620 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VagYM4_41630 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VagYM4_41630 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VagYM4_41630 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VagYM4_41630 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VagYM4_41650 PF01810 LysE type translocator VagYM4_41660 PF12833 Helix-turn-helix domain VagYM4_41690 PF01557 Fumarylacetoacetate (FAA) hydrolase family VagYM4_41730 PF00892 EamA-like transporter family VagYM4_41740 PF00462 Glutaredoxin VagYM4_41770 PF07690 Major Facilitator Superfamily VagYM4_41780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_41780 PF03466 LysR substrate binding domain VagYM4_41790 PF00563 EAL domain VagYM4_41790 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_41790 PF08447 PAS fold VagYM4_41790 PF08448 PAS fold VagYM4_41800 PF01476 LysM domain VagYM4_41800 PF01551 Peptidase family M23 VagYM4_41800 PF08525 Opacity-associated protein A N-terminal motif VagYM4_41860 PF02743 Cache domain VagYM4_41860 PF00672 HAMP domain VagYM4_41860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_41880 PF03222 Tryptophan/tyrosine permease family VagYM4_41940 PF08240 Alcohol dehydrogenase GroES-like domain VagYM4_41940 PF00107 Zinc-binding dehydrogenase VagYM4_41950 PF02378 Phosphotransferase system, EIIC VagYM4_41950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM4_41960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM4_41990 PF01758 Sodium Bile acid symporter family VagYM4_42010 PF01161 Phosphatidylethanolamine-binding protein VagYM4_42020 PF02567 Phenazine biosynthesis-like protein VagYM4_42030 PF10282 Lactonase, 7-bladed beta-propeller VagYM4_42050 PF00005 ABC transporter VagYM4_42090 PF12838 4Fe-4S dicluster domain VagYM4_42090 PF01568 Molydopterin dinucleotide binding domain VagYM4_42090 PF00384 Molybdopterin oxidoreductase VagYM4_42090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VagYM4_42090 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VagYM4_42130 PF00873 AcrB/AcrD/AcrF family VagYM4_42170 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_42170 PF17151 Periplasmic sensor domain VagYM4_42190 PF13302 Acetyltransferase (GNAT) domain VagYM4_42210 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VagYM4_42220 PF00873 AcrB/AcrD/AcrF family VagYM4_42230 PF13533 Biotin-lipoyl like VagYM4_42260 PF00326 Prolyl oligopeptidase family VagYM4_42260 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VagYM4_42270 PF12848 ABC transporter VagYM4_42270 PF16326 ABC transporter C-terminal domain VagYM4_42270 PF00005 ABC transporter VagYM4_42280 PF00582 Universal stress protein family VagYM4_42290 PF02525 Flavodoxin-like fold VagYM4_42300 PF02254 TrkA-N domain VagYM4_42300 PF00999 Sodium/hydrogen exchanger family VagYM4_42330 PF00128 Alpha amylase, catalytic domain VagYM4_42340 PF13411 MerR HTH family regulatory protein VagYM4_42350 PF02627 Carboxymuconolactone decarboxylase family VagYM4_42370 PF08453 Peptidase family M9 N-terminal VagYM4_42370 PF04151 Bacterial pre-peptidase C-terminal domain VagYM4_42370 PF01752 Collagenase VagYM4_42390 PF17848 Acetyl-coA carboxylase zinc finger domain VagYM4_42390 PF01039 Carboxyl transferase domain VagYM4_42400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_42400 PF03466 LysR substrate binding domain VagYM4_42410 PF00672 HAMP domain VagYM4_42410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_42410 PF02743 Cache domain VagYM4_42430 PF03824 High-affinity nickel-transport protein VagYM4_42440 PF02583 Metal-sensitive transcriptional repressor VagYM4_42480 PF01584 CheW-like domain VagYM4_42480 PF00072 Response regulator receiver domain VagYM4_42500 PF01243 Pyridoxamine 5'-phosphate oxidase VagYM4_42510 PF06228 Haem utilisation ChuX/HutX VagYM4_42520 PF04055 Radical SAM superfamily VagYM4_42530 PF03544 Gram-negative bacterial TonB protein C-terminal VagYM4_42540 PF01618 MotA/TolQ/ExbB proton channel family VagYM4_42550 PF02472 Biopolymer transport protein ExbD/TolR VagYM4_42570 PF01032 FecCD transport family VagYM4_42580 PF00005 ABC transporter VagYM4_42670 PF01467 Cytidylyltransferase-like VagYM4_42680 PF02540 NAD synthase VagYM4_42690 PF03473 MOSC domain VagYM4_42690 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM4_42690 PF03476 MOSC N-terminal beta barrel domain VagYM4_42690 PF03473 MOSC domain VagYM4_42690 PF00111 2Fe-2S iron-sulfur cluster binding domain VagYM4_42690 PF03476 MOSC N-terminal beta barrel domain VagYM4_42700 PF01679 Proteolipid membrane potential modulator VagYM4_42710 PF01979 Amidohydrolase family VagYM4_42720 PF05661 Protein of unknown function (DUF808) VagYM4_42780 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_42790 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_42790 PF14785 Maltose transport system permease protein MalF P2 domain VagYM4_42800 PF01547 Bacterial extracellular solute-binding protein VagYM4_42810 PF08402 TOBE domain VagYM4_42810 PF00005 ABC transporter VagYM4_42820 PF02397 Bacterial sugar transferase VagYM4_42850 PF13807 G-rich domain on putative tyrosine kinase VagYM4_42850 PF02706 Chain length determinant protein VagYM4_42850 PF13614 AAA domain VagYM4_42870 PF13439 Glycosyltransferase Family 4 VagYM4_42870 PF00534 Glycosyl transferases group 1 VagYM4_42940 PF16925 Tetracyclin repressor-like, C-terminal domain VagYM4_42940 PF00440 Bacterial regulatory proteins, tetR family VagYM4_42950 PF16884 N-terminal domain of oxidoreductase VagYM4_42950 PF00107 Zinc-binding dehydrogenase VagYM4_42960 PF13417 Glutathione S-transferase, N-terminal domain VagYM4_42970 PF00199 Catalase VagYM4_42970 PF06628 Catalase-related immune-responsive VagYM4_42980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VagYM4_42980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VagYM4_43000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM4_43020 PF12833 Helix-turn-helix domain VagYM4_43030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VagYM4_43030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VagYM4_43040 PF01238 Phosphomannose isomerase type I VagYM4_43060 PF13419 Haloacid dehalogenase-like hydrolase VagYM4_43070 PF00127 Copper binding proteins, plastocyanin/azurin family VagYM4_43080 PF02378 Phosphotransferase system, EIIC VagYM4_43100 PF01266 FAD dependent oxidoreductase VagYM4_43110 PF18113 Rubredoxin binding C-terminal domain VagYM4_43110 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_43120 PF00171 Aldehyde dehydrogenase family VagYM4_43130 PF00355 Rieske [2Fe-2S] domain VagYM4_43130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) VagYM4_43140 PF02028 BCCT, betaine/carnitine/choline family transporter VagYM4_43150 PF03466 LysR substrate binding domain VagYM4_43150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_43160 PF02386 Cation transport protein VagYM4_43170 PF02254 TrkA-N domain VagYM4_43170 PF02080 TrkA-C domain VagYM4_43180 PF00486 Transcriptional regulatory protein, C terminal VagYM4_43180 PF00072 Response regulator receiver domain VagYM4_43190 PF13493 Domain of unknown function (DUF4118) VagYM4_43190 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_43190 PF02702 Osmosensitive K+ channel His kinase sensor domain VagYM4_43190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_43190 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_43190 PF02702 Osmosensitive K+ channel His kinase sensor domain VagYM4_43190 PF13493 Domain of unknown function (DUF4118) VagYM4_43190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_43200 PF00664 ABC transporter transmembrane region VagYM4_43200 PF00005 ABC transporter VagYM4_43210 PF07715 TonB-dependent Receptor Plug Domain VagYM4_43210 PF00593 TonB dependent receptor VagYM4_43220 PF00005 ABC transporter VagYM4_43230 PF01497 Periplasmic binding protein VagYM4_43240 PF01032 FecCD transport family VagYM4_43260 PF00529 HlyD membrane-fusion protein of T1SS VagYM4_43270 PF00664 ABC transporter transmembrane region VagYM4_43270 PF00005 ABC transporter VagYM4_43290 PF00196 Bacterial regulatory proteins, luxR family VagYM4_43300 PF00196 Bacterial regulatory proteins, luxR family VagYM4_43320 PF02743 Cache domain VagYM4_43320 PF00672 HAMP domain VagYM4_43320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_43330 PF07726 ATPase family associated with various cellular activities (AAA) VagYM4_43330 PF17863 AAA lid domain VagYM4_43340 PF01882 Protein of unknown function DUF58 VagYM4_43360 PF13519 von Willebrand factor type A domain VagYM4_43370 PF13519 von Willebrand factor type A domain VagYM4_43400 PF00005 ABC transporter VagYM4_43410 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_43420 PF00528 Binding-protein-dependent transport system inner membrane component VagYM4_43430 PF12849 PBP superfamily domain VagYM4_43440 PF12729 Four helix bundle sensory module for signal transduction VagYM4_43440 PF00672 HAMP domain VagYM4_43440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_43480 PF07715 TonB-dependent Receptor Plug Domain VagYM4_43480 PF00593 TonB dependent receptor VagYM4_43490 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VagYM4_43490 PF00326 Prolyl oligopeptidase family VagYM4_43500 PF00270 DEAD/DEAH box helicase VagYM4_43500 PF00271 Helicase conserved C-terminal domain VagYM4_43520 PF17969 L,D-transpeptidase C-terminal domain VagYM4_43520 PF01476 LysM domain VagYM4_43520 PF03734 L,D-transpeptidase catalytic domain VagYM4_43530 PF00875 DNA photolyase VagYM4_43530 PF03441 FAD binding domain of DNA photolyase VagYM4_43540 PF13411 MerR HTH family regulatory protein VagYM4_43550 PF08349 Protein of unknown function (DUF1722) VagYM4_43560 PF01048 Phosphorylase superfamily VagYM4_43590 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_43600 PF11742 Protein of unknown function (DUF3302) VagYM4_43610 PF00529 HlyD membrane-fusion protein of T1SS VagYM4_43610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VagYM4_43620 PF07155 ECF-type riboflavin transporter, S component VagYM4_43630 PF12558 ATP-binding cassette cobalt transporter VagYM4_43630 PF00005 ABC transporter VagYM4_43670 PF13237 4Fe-4S dicluster domain VagYM4_43670 PF12801 4Fe-4S binding domain VagYM4_43680 PF12800 4Fe-4S binding domain VagYM4_43680 PF12838 4Fe-4S dicluster domain VagYM4_43690 PF00583 Acetyltransferase (GNAT) family VagYM4_43720 PF12945 Flagellar protein YcgR VagYM4_43720 PF07238 PilZ domain VagYM4_43730 PF13609 Gram-negative porin VagYM4_43740 PF17200 Single Cache domain 2 VagYM4_43740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_43740 PF00672 HAMP domain VagYM4_43750 PF13654 AAA domain VagYM4_43750 PF05362 Lon protease (S16) C-terminal proteolytic domain VagYM4_43770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VagYM4_43770 PF00005 ABC transporter VagYM4_43780 PF00326 Prolyl oligopeptidase family VagYM4_43780 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VagYM4_43790 PF03466 LysR substrate binding domain VagYM4_43790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_43800 PF02652 L-lactate permease VagYM4_43810 PF01070 FMN-dependent dehydrogenase VagYM4_43830 PF00924 Mechanosensitive ion channel VagYM4_43840 PF00194 Eukaryotic-type carbonic anhydrase VagYM4_43850 PF00107 Zinc-binding dehydrogenase VagYM4_43850 PF08240 Alcohol dehydrogenase GroES-like domain VagYM4_43860 PF00155 Aminotransferase class I and II VagYM4_43870 PF00563 EAL domain VagYM4_43870 PF13188 PAS domain VagYM4_43870 PF03707 Bacterial signalling protein N terminal repeat VagYM4_43870 PF00990 Diguanylate cyclase, GGDEF domain VagYM4_43880 PF00497 Bacterial extracellular solute-binding proteins, family 3 VagYM4_43900 PF00080 Copper/zinc superoxide dismutase (SODC) VagYM4_43910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_43910 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_43920 PF00072 Response regulator receiver domain VagYM4_43920 PF00486 Transcriptional regulatory protein, C terminal VagYM4_43960 PF03466 LysR substrate binding domain VagYM4_43960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_43970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VagYM4_44030 PF03466 LysR substrate binding domain VagYM4_44030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_44060 PF18269 T3SS EscN ATPase C-terminal domain VagYM4_44060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VagYM4_44080 PF01706 FliG C-terminal domain VagYM4_44080 PF14842 FliG N-terminal domain VagYM4_44080 PF14841 FliG middle domain VagYM4_44090 PF08345 Flagellar M-ring protein C-terminal VagYM4_44090 PF01514 Secretory protein of YscJ/FliF family VagYM4_44100 PF02049 Flagellar hook-basal body complex protein FliE VagYM4_44110 PF02954 Bacterial regulatory protein, Fis family VagYM4_44110 PF00072 Response regulator receiver domain VagYM4_44110 PF00158 Sigma-54 interaction domain VagYM4_44140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VagYM4_44150 PF00813 FliP family VagYM4_44160 PF01313 Bacterial export proteins, family 3 VagYM4_44170 PF01311 Bacterial export proteins, family 1 VagYM4_44180 PF01312 FlhB HrpN YscU SpaS Family VagYM4_44190 PF00771 FHIPEP family VagYM4_44210 PF00700 Bacterial flagellin C-terminal helical region VagYM4_44210 PF00669 Bacterial flagellin N-terminal helical region VagYM4_44250 PF02465 Flagellar hook-associated protein 2 N-terminus VagYM4_44250 PF07195 Flagellar hook-associated protein 2 C-terminus VagYM4_44250 PF07196 Flagellin hook IN motif VagYM4_44260 PF02561 Flagellar protein FliS VagYM4_44290 PF03748 Flagellar basal body-associated protein FliL VagYM4_44300 PF04542 Sigma-70 region 2 VagYM4_44300 PF04545 Sigma-70, region 4 VagYM4_44310 PF01618 MotA/TolQ/ExbB proton channel family VagYM4_44320 PF00691 OmpA family VagYM4_44320 PF13677 Membrane MotB of proton-channel complex MotA/MotB VagYM4_44350 PF08000 Bacterial PH domain VagYM4_44420 PF02901 Pyruvate formate lyase-like VagYM4_44420 PF01228 Glycine radical VagYM4_44430 PF04055 Radical SAM superfamily VagYM4_44440 PF00923 Transaldolase/Fructose-6-phosphate aldolase VagYM4_44460 PF00583 Acetyltransferase (GNAT) family VagYM4_44480 PF07690 Major Facilitator Superfamily VagYM4_44490 PF03466 LysR substrate binding domain VagYM4_44490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_44500 PF00892 EamA-like transporter family VagYM4_44540 PF13533 Biotin-lipoyl like VagYM4_44560 PF01594 AI-2E family transporter VagYM4_44570 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VagYM4_44580 PF00970 Oxidoreductase FAD-binding domain VagYM4_44580 PF00175 Oxidoreductase NAD-binding domain VagYM4_44600 PF09905 DNA-binding protein VF530 VagYM4_44610 PF03466 LysR substrate binding domain VagYM4_44610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_44630 PF00881 Nitroreductase family VagYM4_44640 PF12833 Helix-turn-helix domain VagYM4_44640 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VagYM4_44650 PF00686 Starch binding domain VagYM4_44650 PF00128 Alpha amylase, catalytic domain VagYM4_44660 PF00768 D-alanyl-D-alanine carboxypeptidase VagYM4_44660 PF07943 Penicillin-binding protein 5, C-terminal domain VagYM4_44670 PF00561 alpha/beta hydrolase fold VagYM4_44710 PF03441 FAD binding domain of DNA photolyase VagYM4_44710 PF00875 DNA photolyase VagYM4_44720 PF02469 Fasciclin domain VagYM4_44730 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VagYM4_44730 PF18416 N-acetylglucosamine binding protein domain 2 VagYM4_44740 PF01734 Patatin-like phospholipase VagYM4_44750 PF01914 MarC family integral membrane protein VagYM4_44760 PF00881 Nitroreductase family VagYM4_44780 PF02563 Polysaccharide biosynthesis/export protein VagYM4_44780 PF10531 SLBB domain VagYM4_44780 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VagYM4_44790 PF01451 Low molecular weight phosphotyrosine protein phosphatase VagYM4_44800 PF02706 Chain length determinant protein VagYM4_44800 PF13807 G-rich domain on putative tyrosine kinase VagYM4_44800 PF13614 AAA domain VagYM4_44820 PF00375 Sodium:dicarboxylate symporter family VagYM4_44830 PF06803 Protein of unknown function (DUF1232) VagYM4_44840 PF07687 Peptidase dimerisation domain VagYM4_44840 PF01546 Peptidase family M20/M25/M40 VagYM4_44850 PF07670 Nucleoside recognition VagYM4_44860 PF07670 Nucleoside recognition VagYM4_44880 PF00128 Alpha amylase, catalytic domain VagYM4_44890 PF00912 Transglycosylase VagYM4_44900 PF00128 Alpha amylase, catalytic domain VagYM4_44900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VagYM4_44900 PF02806 Alpha amylase, C-terminal all-beta domain VagYM4_44910 PF02446 4-alpha-glucanotransferase VagYM4_44920 PF00343 Carbohydrate phosphorylase VagYM4_44930 PF17874 MalT-like TPR region VagYM4_44930 PF00196 Bacterial regulatory proteins, luxR family VagYM4_44960 PF02630 SCO1/SenC VagYM4_44970 PF02378 Phosphotransferase system, EIIC VagYM4_44970 PF00367 phosphotransferase system, EIIB VagYM4_44980 PF03193 RsgA GTPase VagYM4_44990 PF00375 Sodium:dicarboxylate symporter family VagYM4_45000 PF08543 Phosphomethylpyrimidine kinase VagYM4_45020 PF13520 Amino acid permease VagYM4_45030 PF01276 Orn/Lys/Arg decarboxylase, major domain VagYM4_45030 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VagYM4_45030 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VagYM4_45060 PF03714 Bacterial pullanase-associated domain VagYM4_45060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VagYM4_45060 PF11852 Domain of unknown function (DUF3372) VagYM4_45060 PF18494 Pullulanase Ins domain VagYM4_45060 PF17967 Pullulanase N2 domain VagYM4_45070 PF04231 Endonuclease I VagYM4_45080 PF16657 Maltogenic Amylase, C-terminal domain VagYM4_45080 PF02903 Alpha amylase, N-terminal ig-like domain VagYM4_45080 PF00128 Alpha amylase, catalytic domain VagYM4_45110 PF02264 LamB porin VagYM4_45120 PF00128 Alpha amylase, catalytic domain VagYM4_45120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VagYM4_45140 PF07690 Major Facilitator Superfamily VagYM4_45190 PF01551 Peptidase family M23 VagYM4_45190 PF04225 Opacity-associated protein A LysM-like domain VagYM4_45200 PF00675 Insulinase (Peptidase family M16) VagYM4_45200 PF05193 Peptidase M16 inactive domain VagYM4_45210 PF17200 Single Cache domain 2 VagYM4_45210 PF00672 HAMP domain VagYM4_45210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VagYM4_45220 PF00005 ABC transporter VagYM4_45230 PF01032 FecCD transport family VagYM4_45240 PF01032 FecCD transport family VagYM4_45250 PF01497 Periplasmic binding protein VagYM4_45260 PF07715 TonB-dependent Receptor Plug Domain VagYM4_45260 PF00593 TonB dependent receptor VagYM4_45260 PF07660 Secretin and TonB N terminus short domain VagYM4_45270 PF00593 TonB dependent receptor VagYM4_45270 PF07715 TonB-dependent Receptor Plug Domain VagYM4_45280 PF02655 ATP-grasp domain VagYM4_45280 PF00206 Lyase VagYM4_45290 PF04183 IucA / IucC family VagYM4_45290 PF06276 Ferric iron reductase FhuF-like transporter VagYM4_45310 PF04183 IucA / IucC family VagYM4_45310 PF06276 Ferric iron reductase FhuF-like transporter VagYM4_45320 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VagYM4_45320 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VagYM4_45330 PF01547 Bacterial extracellular solute-binding protein VagYM4_45340 PF08521 Two-component sensor kinase N-terminal VagYM4_45340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_45340 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_45350 PF00486 Transcriptional regulatory protein, C terminal VagYM4_45350 PF00072 Response regulator receiver domain VagYM4_45360 PF00367 phosphotransferase system, EIIB VagYM4_45360 PF02378 Phosphotransferase system, EIIC VagYM4_45400 PF08241 Methyltransferase domain VagYM4_45420 PF00535 Glycosyl transferase family 2 VagYM4_45450 PF00005 ABC transporter VagYM4_45490 PF02566 OsmC-like protein VagYM4_45500 PF01047 MarR family VagYM4_45510 PF10417 C-terminal domain of 1-Cys peroxiredoxin VagYM4_45510 PF00578 AhpC/TSA family VagYM4_45520 PF07992 Pyridine nucleotide-disulphide oxidoreductase VagYM4_45520 PF13192 Thioredoxin domain VagYM4_45550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VagYM4_45550 PF03466 LysR substrate binding domain VagYM4_45560 PF01965 DJ-1/PfpI family VagYM4_45560 PF12833 Helix-turn-helix domain VagYM4_45570 PF08281 Sigma-70, region 4 VagYM4_45570 PF04542 Sigma-70 region 2 VagYM4_45610 PF03475 3-alpha domain VagYM4_45610 PF03473 MOSC domain VagYM4_45660 PF12833 Helix-turn-helix domain VagYM4_45660 PF06719 AraC-type transcriptional regulator N-terminus VagYM4_45680 PF00664 ABC transporter transmembrane region VagYM4_45680 PF00005 ABC transporter VagYM4_45700 PF01037 Lrp/AsnC ligand binding domain VagYM4_45730 PF13302 Acetyltransferase (GNAT) domain VagYM4_45760 PF00474 Sodium:solute symporter family VagYM4_45770 PF00474 Sodium:solute symporter family VagYM4_45790 PF00171 Aldehyde dehydrogenase family VagYM4_45790 PF14850 DNA-binding domain of Proline dehydrogenase VagYM4_45790 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VagYM4_45790 PF01619 Proline dehydrogenase VagYM4_45800 PF12833 Helix-turn-helix domain VagYM4_45820 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VagYM4_45820 PF01243 Pyridoxamine 5'-phosphate oxidase VagYM4_45830 PF00512 His Kinase A (phospho-acceptor) domain VagYM4_45830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VagYM4_45830 PF02743 Cache domain VagYM4_45840 PF02954 Bacterial regulatory protein, Fis family VagYM4_45840 PF00072 Response regulator receiver domain VagYM4_45840 PF00158 Sigma-54 interaction domain VagYM4_45850 PF00529 HlyD membrane-fusion protein of T1SS VagYM4_45880 PF00005 ABC transporter VagYM4_45880 PF00664 ABC transporter transmembrane region VagYM4_45880 PF03412 Peptidase C39 family VagYM4_45910 PF03358 NADPH-dependent FMN reductase VagYM4_45920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VagYM4_45930 PF00246 Zinc carboxypeptidase VagYM4_45940 PF01380 SIS domain VagYM4_45940 PF01418 Helix-turn-helix domain, rpiR family VagYM4_45950 PF01380 SIS domain VagYM4_45960 PF02378 Phosphotransferase system, EIIC VagYM4_45960 PF00367 phosphotransferase system, EIIB VagYM4_45970 PF00267 Gram-negative porin VagYM4_45990 PF00132 Bacterial transferase hexapeptide (six repeats) VagYM4_46010 PF05127 Helicase VagYM4_46010 PF13718 GNAT acetyltransferase 2 VagYM4_46020 PF08775 ParB family VagYM4_46020 PF02195 ParB-like nuclease domain VagYM4_46030 PF18607 ParA helix turn helix domain VagYM4_46030 PF13614 AAA domain