locus-tag class description VAA_00002 PF00196 Bacterial regulatory proteins, luxR family VAA_00002 PF00072 Response regulator receiver domain VAA_00004 PF04245 37-kD nucleoid-associated bacterial protein VAA_00010 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VAA_00015 PF13276 HTH-like domain VAA_00015 PF00665 Integrase core domain VAA_00015 PF13333 Integrase core domain VAA_00021 PF08242 Methyltransferase domain VAA_00035 PF01527 Transposase VAA_00047 PF00485 Phosphoribulokinase / Uridine kinase family VAA_00048 PF08279 HTH domain VAA_00048 PF03099 Biotin/lipoate A/B protein ligase family VAA_00048 PF02237 Biotin protein ligase C terminal domain VAA_00049 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VAA_00049 PF01565 FAD binding domain VAA_00051 PF13091 PLD-like domain VAA_00069 PF01966 HD domain VAA_00069 PF13286 Phosphohydrolase-associated domain VAA_00070 PF13286 Phosphohydrolase-associated domain VAA_00070 PF01966 HD domain VAA_00082 PF09308 LuxQ, periplasmic VAA_00082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00082 PF00512 His Kinase A (phospho-acceptor) domain VAA_00082 PF00072 Response regulator receiver domain VAA_00083 PF06610 L-alanine exporter VAA_00084 PF00589 Phage integrase family VAA_00084 PF13356 Arm DNA-binding domain VAA_00093 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) VAA_00097 PF02195 ParB-like nuclease domain VAA_00097 PF08775 ParB family VAA_00113 PF08331 Domain of unknown function (DUF1730) VAA_00114 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VAA_00115 PF01520 N-acetylmuramoyl-L-alanine amidase VAA_00116 PF08676 MutL C terminal dimerisation domain VAA_00116 PF01119 DNA mismatch repair protein, C-terminal domain VAA_00118 PF17209 Hfq protein VAA_00119 PF16360 GTP-binding GTPase Middle Region VAA_00119 PF13167 GTP-binding GTPase N-terminal VAA_00119 PF01926 50S ribosome-binding GTPase VAA_00120 PF12221 Bacterial membrane protein N terminal VAA_00120 PF01145 SPFH domain / Band 7 family VAA_00121 PF01145 SPFH domain / Band 7 family VAA_00122 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VAA_00123 PF04102 SlyX VAA_00125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_00125 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA_00126 PF13309 HTH domain VAA_00126 PF08348 YheO-like PAS domain VAA_00127 PF02635 DsrE/DsrF-like family VAA_00128 PF02635 DsrE/DsrF-like family VAA_00129 PF04077 DsrH like protein VAA_00130 PF00164 Ribosomal protein S12/S23 VAA_00131 PF00177 Ribosomal protein S7p/S5e VAA_00132 PF00679 Elongation factor G C-terminus VAA_00132 PF14492 Elongation Factor G, domain II VAA_00132 PF03764 Elongation factor G, domain IV VAA_00132 PF00009 Elongation factor Tu GTP binding domain VAA_00132 PF03144 Elongation factor Tu domain 2 VAA_00134 PF00271 Helicase conserved C-terminal domain VAA_00139 PF01381 Helix-turn-helix VAA_00141 PF07804 HipA-like C-terminal domain VAA_00141 PF13657 HipA N-terminal domain VAA_00150 PF00149 Calcineurin-like phosphoesterase VAA_00150 PF02872 5'-nucleotidase, C-terminal domain VAA_00152 PF06945 Protein of unknown function (DUF1289) VAA_00154 PF13416 Bacterial extracellular solute-binding protein VAA_00155 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00156 PF00005 ABC transporter VAA_00157 PF01066 CDP-alcohol phosphatidyltransferase VAA_00173 PF02368 Bacterial Ig-like domain (group 2) VAA_00173 PF11999 Protein of unknown function (DUF3494) VAA_00175 PF01380 SIS domain VAA_00176 PF00455 DeoR C terminal sensor domain VAA_00176 PF08220 DeoR-like helix-turn-helix domain VAA_00177 PF00224 Pyruvate kinase, barrel domain VAA_00177 PF02887 Pyruvate kinase, alpha/beta domain VAA_00179 PF17158 Membrane-associated sensor, integral membrane domain VAA_00179 PF00990 Diguanylate cyclase, GGDEF domain VAA_00181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00181 PF03466 LysR substrate binding domain VAA_00182 PF01810 LysE type translocator VAA_00183 PF00924 Mechanosensitive ion channel VAA_00183 PF05552 Conserved TM helix VAA_00184 PF01116 Fructose-bisphosphate aldolase class-II VAA_00185 PF00162 Phosphoglycerate kinase VAA_00186 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA_00186 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_00188 PF07715 TonB-dependent Receptor Plug Domain VAA_00188 PF00593 TonB dependent receptor VAA_00189 PF03466 LysR substrate binding domain VAA_00189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00190 PF02384 N-6 DNA Methylase VAA_00190 PF12161 HsdM N-terminal domain VAA_00196 PF01555 DNA methylase VAA_00198 PF00271 Helicase conserved C-terminal domain VAA_00198 PF08463 EcoEI R protein C-terminal VAA_00198 PF04851 Type III restriction enzyme, res subunit VAA_00198 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VAA_00203 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VAA_00204 PF01964 Radical SAM ThiC family VAA_00204 PF13667 ThiC-associated domain VAA_00205 PF02581 Thiamine monophosphate synthase VAA_00206 PF00899 ThiF family VAA_00207 PF02597 ThiS family VAA_00208 PF05690 Thiazole biosynthesis protein ThiG VAA_00209 PF06968 Biotin and Thiamin Synthesis associated domain VAA_00209 PF04055 Radical SAM superfamily VAA_00210 PF00557 Metallopeptidase family M24 VAA_00210 PF01321 Creatinase/Prolidase N-terminal domain VAA_00210 PF00557 Metallopeptidase family M24 VAA_00210 PF01321 Creatinase/Prolidase N-terminal domain VAA_00211 PF03466 LysR substrate binding domain VAA_00211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00212 PF07690 Major Facilitator Superfamily VAA_00215 PF08212 Lipocalin-like domain VAA_00238 PF01709 Transcriptional regulator VAA_00239 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VAA_00239 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VAA_00240 PF03222 Tryptophan/tyrosine permease family VAA_00247 PF03466 LysR substrate binding domain VAA_00247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00248 PF13460 NAD(P)H-binding VAA_00250 PF03733 Inner membrane component domain VAA_00253 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VAA_00253 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VAA_00254 PF06029 AlkA N-terminal domain VAA_00254 PF00730 HhH-GPD superfamily base excision DNA repair protein VAA_00256 PF03143 Elongation factor Tu C-terminal domain VAA_00256 PF00009 Elongation factor Tu GTP binding domain VAA_00256 PF03144 Elongation factor Tu domain 2 VAA_00257 PF01250 Ribosomal protein S6 VAA_00258 PF00436 Single-strand binding protein family VAA_00259 PF01084 Ribosomal protein S18 VAA_00260 PF03948 Ribosomal protein L9, C-terminal domain VAA_00260 PF01281 Ribosomal protein L9, N-terminal domain VAA_00262 PF03796 DnaB-like helicase C terminal domain VAA_00262 PF00772 DnaB-like helicase N terminal domain VAA_00263 PF00842 Alanine racemase, C-terminal domain VAA_00263 PF01168 Alanine racemase, N-terminal domain VAA_00264 PF00342 Phosphoglucose isomerase VAA_00266 PF01475 Ferric uptake regulator family VAA_00267 PF01207 Dihydrouridine synthase (Dus) VAA_00271 PF00175 Oxidoreductase NAD-binding domain VAA_00271 PF00258 Flavodoxin VAA_00271 PF00667 FAD binding domain VAA_00272 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VAA_00272 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VAA_00273 PF01507 Phosphoadenosine phosphosulfate reductase family VAA_00278 PF01695 IstB-like ATP binding protein VAA_00279 PF00665 Integrase core domain VAA_00288 PF00239 Resolvase, N terminal domain VAA_00288 PF02796 Helix-turn-helix domain of resolvase VAA_00291 PF01420 Type I restriction modification DNA specificity domain VAA_00292 PF12161 HsdM N-terminal domain VAA_00292 PF02384 N-6 DNA Methylase VAA_00296 PF05638 Type VI secretion system effector, Hcp VAA_00297 PF04717 Type VI secretion system, phage-baseplate injector VAA_00297 PF16671 Actin cross-linking domain VAA_00312 PF13333 Integrase core domain VAA_00312 PF13276 HTH-like domain VAA_00312 PF00665 Integrase core domain VAA_00313 PF01527 Transposase VAA_00325 PF01253 Translation initiation factor SUI1 VAA_00329 PF01820 D-ala D-ala ligase N-terminus VAA_00329 PF07478 D-ala D-ala ligase C-terminus VAA_00331 PF13380 CoA binding domain VAA_00331 PF00583 Acetyltransferase (GNAT) family VAA_00331 PF13607 Succinyl-CoA ligase like flavodoxin domain VAA_00332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00332 PF03466 LysR substrate binding domain VAA_00334 PF00929 Exonuclease VAA_00335 PF03193 RsgA GTPase VAA_00336 PF02666 Phosphatidylserine decarboxylase VAA_00338 PF02080 TrkA-C domain VAA_00338 PF03600 Citrate transporter VAA_00340 PF00672 HAMP domain VAA_00340 PF02743 Cache domain VAA_00340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00342 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VAA_00342 PF01676 Metalloenzyme superfamily VAA_00344 PF01551 Peptidase family M23 VAA_00346 PF08360 QacR-like protein, C-terminal region VAA_00346 PF00440 Bacterial regulatory proteins, tetR family VAA_00347 PF01208 Uroporphyrinogen decarboxylase (URO-D) VAA_00348 PF00293 NUDIX domain VAA_00348 PF09297 NADH pyrophosphatase zinc ribbon domain VAA_00349 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VAA_00350 PF04997 RNA polymerase Rpb1, domain 1 VAA_00350 PF00623 RNA polymerase Rpb1, domain 2 VAA_00350 PF04983 RNA polymerase Rpb1, domain 3 VAA_00350 PF05000 RNA polymerase Rpb1, domain 4 VAA_00350 PF04998 RNA polymerase Rpb1, domain 5 VAA_00351 PF04563 RNA polymerase beta subunit VAA_00351 PF00562 RNA polymerase Rpb2, domain 6 VAA_00351 PF10385 RNA polymerase beta subunit external 1 domain VAA_00351 PF04561 RNA polymerase Rpb2, domain 2 VAA_00351 PF04560 RNA polymerase Rpb2, domain 7 VAA_00351 PF04565 RNA polymerase Rpb2, domain 3 VAA_00352 PF00542 Ribosomal protein L7/L12 C-terminal domain VAA_00352 PF16320 Ribosomal protein L7/L12 dimerisation domain VAA_00353 PF00466 Ribosomal protein L10 VAA_00354 PF00687 Ribosomal protein L1p/L10e family VAA_00355 PF00298 Ribosomal protein L11, RNA binding domain VAA_00355 PF03946 Ribosomal protein L11, N-terminal domain VAA_00356 PF00467 KOW motif VAA_00356 PF02357 Transcription termination factor nusG VAA_00357 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VAA_00361 PF00884 Sulfatase VAA_00361 PF08019 Phosphoethanolamine transferase EptA/EptB VAA_00362 PF01219 Prokaryotic diacylglycerol kinase VAA_00367 PF00303 Thymidylate synthase VAA_00368 PF01790 Prolipoprotein diacylglyceryl transferase VAA_00369 PF01925 Sulfite exporter TauE/SafE VAA_00370 PF02896 PEP-utilising enzyme, TIM barrel domain VAA_00370 PF05524 PEP-utilising enzyme, N-terminal VAA_00370 PF00391 PEP-utilising enzyme, mobile domain VAA_00370 PF01590 GAF domain VAA_00371 PF00293 NUDIX domain VAA_00372 PF02976 DNA mismatch repair enzyme MutH VAA_00374 PF00248 Aldo/keto reductase family VAA_00376 PF02954 Bacterial regulatory protein, Fis family VAA_00376 PF00072 Response regulator receiver domain VAA_00376 PF00158 Sigma-54 interaction domain VAA_00377 PF01336 OB-fold nucleic acid binding domain VAA_00377 PF00152 tRNA synthetases class II (D, K and N) VAA_00378 PF03462 PCRF domain VAA_00378 PF00472 RF-1 domain VAA_00379 PF05525 Branched-chain amino acid transport protein VAA_00380 PF05175 Methyltransferase small domain VAA_00381 PF00270 DEAD/DEAH box helicase VAA_00381 PF00271 Helicase conserved C-terminal domain VAA_00382 PF03144 Elongation factor Tu domain 2 VAA_00382 PF00009 Elongation factor Tu GTP binding domain VAA_00382 PF16658 Class II release factor RF3, C-terminal domain VAA_00383 PF03707 Bacterial signalling protein N terminal repeat VAA_00383 PF00990 Diguanylate cyclase, GGDEF domain VAA_00383 PF00563 EAL domain VAA_00384 PF00583 Acetyltransferase (GNAT) family VAA_00386 PF13508 Acetyltransferase (GNAT) domain VAA_00388 PF15935 RNase LS, bacterial toxin VAA_00389 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA VAA_00390 PF00589 Phage integrase family VAA_00390 PF02899 Phage integrase, N-terminal SAM-like domain VAA_00401 PF00665 Integrase core domain VAA_00403 PF00303 Thymidylate synthase VAA_00405 PF02690 Na+/Pi-cotransporter VAA_00406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00406 PF03466 LysR substrate binding domain VAA_00407 PF01022 Bacterial regulatory protein, arsR family VAA_00408 PF01649 Ribosomal protein S20 VAA_00409 PF03023 Lipid II flippase MurJ VAA_00410 PF01687 Riboflavin kinase VAA_00410 PF06574 FAD synthetase VAA_00411 PF08264 Anticodon-binding domain of tRNA VAA_00411 PF00133 tRNA synthetases class I (I, L, M and V) VAA_00411 PF06827 Zinc finger found in FPG and IleRS VAA_00412 PF01252 Signal peptidase (SPase) II VAA_00414 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_00415 PF02401 LytB protein VAA_00416 PF02554 Carbon starvation protein CstA VAA_00419 PF13580 SIS domain VAA_00420 PF03702 Anhydro-N-acetylmuramic acid kinase VAA_00421 PF00933 Glycosyl hydrolase family 3 N terminal domain VAA_00422 PF00072 Response regulator receiver domain VAA_00422 PF04397 LytTr DNA-binding domain VAA_00423 PF06580 Histidine kinase VAA_00423 PF07694 5TMR of 5TMR-LYT VAA_00424 PF00793 DAHP synthetase I family VAA_00425 PF02153 Prephenate dehydrogenase VAA_00425 PF01817 Chorismate mutase type II VAA_00426 PF07238 PilZ domain VAA_00427 PF00005 ABC transporter VAA_00427 PF12848 ABC transporter VAA_00428 PF01464 Transglycosylase SLT domain VAA_00428 PF14718 Soluble lytic murein transglycosylase L domain VAA_00430 PF01931 Protein of unknown function DUF84 VAA_00431 PF00563 EAL domain VAA_00431 PF00990 Diguanylate cyclase, GGDEF domain VAA_00432 PF13416 Bacterial extracellular solute-binding protein VAA_00433 PF00800 Prephenate dehydratase VAA_00433 PF01817 Chorismate mutase type II VAA_00434 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VAA_00437 PF13525 Outer membrane lipoprotein VAA_00438 PF00849 RNA pseudouridylate synthase VAA_00438 PF01479 S4 domain VAA_00440 PF02861 Clp amino terminal domain, pathogenicity island component VAA_00440 PF17871 AAA lid domain VAA_00440 PF07724 AAA domain (Cdc48 subfamily) VAA_00440 PF00004 ATPase family associated with various cellular activities (AAA) VAA_00440 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_00443 PF13737 Transposase DDE domain VAA_00445 PF01914 MarC family integral membrane protein VAA_00448 PF00448 SRP54-type protein, GTPase domain VAA_00448 PF02881 SRP54-type protein, helical bundle domain VAA_00449 PF00005 ABC transporter VAA_00450 PF18075 FtsX extracellular domain VAA_00451 PF04545 Sigma-70, region 4 VAA_00451 PF04542 Sigma-70 region 2 VAA_00451 PF00140 Sigma-70 factor, region 1.2 VAA_00453 PF00581 Rhodanese-like domain VAA_00454 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VAA_00454 PF01694 Rhomboid family VAA_00455 PF03748 Flagellar basal body-associated protein FliL VAA_00456 PF04345 Chorismate lyase VAA_00457 PF01040 UbiA prenyltransferase family VAA_00458 PF01553 Acyltransferase VAA_00459 PF00717 Peptidase S24-like VAA_00459 PF01726 LexA DNA binding domain VAA_00461 PF01554 MatE VAA_00464 PF00440 Bacterial regulatory proteins, tetR family VAA_00465 PF07226 Protein of unknown function (DUF1422) VAA_00466 PF02837 Glycosyl hydrolases family 2, sugar binding domain VAA_00466 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VAA_00466 PF00703 Glycosyl hydrolases family 2 VAA_00466 PF16353 Domain of unknown function(DUF4981) VAA_00466 PF02929 Beta galactosidase small chain VAA_00469 PF05958 tRNA (Uracil-5-)-methyltransferase VAA_00474 PF00239 Resolvase, N terminal domain VAA_00474 PF02796 Helix-turn-helix domain of resolvase VAA_00481 PF13657 HipA N-terminal domain VAA_00481 PF07804 HipA-like C-terminal domain VAA_00483 PF01381 Helix-turn-helix VAA_00488 PF00593 TonB dependent receptor VAA_00488 PF07715 TonB-dependent Receptor Plug Domain VAA_00490 PF01177 Asp/Glu/Hydantoin racemase VAA_00492 PF02028 BCCT, betaine/carnitine/choline family transporter VAA_00494 PF01266 FAD dependent oxidoreductase VAA_00495 PF01235 Sodium:alanine symporter family VAA_00497 PF01184 GPR1/FUN34/yaaH family VAA_00498 PF06483 Chitinase C VAA_00498 PF00704 Glycosyl hydrolases family 18 VAA_00499 PF08543 Phosphomethylpyrimidine kinase VAA_00500 PF00958 GMP synthase C terminal domain VAA_00500 PF02540 NAD synthase VAA_00500 PF00117 Glutamine amidotransferase class-I VAA_00501 PF00478 IMP dehydrogenase / GMP reductase domain VAA_00501 PF00571 CBS domain VAA_00502 PF02601 Exonuclease VII, large subunit VAA_00502 PF13742 OB-fold nucleic acid binding domain VAA_00504 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VAA_00504 PF01926 50S ribosome-binding GTPase VAA_00505 PF13360 PQQ-like domain VAA_00506 PF09976 Tetratricopeptide repeat-like domain VAA_00507 PF03129 Anticodon binding domain VAA_00507 PF13393 Histidyl-tRNA synthetase VAA_00508 PF04551 GcpE protein VAA_00509 PF13464 Domain of unknown function (DUF4115) VAA_00510 PF04055 Radical SAM superfamily VAA_00511 PF00334 Nucleoside diphosphate kinase VAA_00512 PF12404 Peptidase VAA_00512 PF00883 Cytosol aminopeptidase family, catalytic domain VAA_00513 PF04384 Iron-sulphur cluster assembly VAA_00514 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_00515 PF00012 Hsp70 protein VAA_00516 PF07743 HSCB C-terminal oligomerisation domain VAA_00516 PF00226 DnaJ domain VAA_00517 PF01521 Iron-sulphur cluster biosynthesis VAA_00518 PF01592 NifU-like N terminal domain VAA_00519 PF00266 Aminotransferase class-V VAA_00521 PF00588 SpoU rRNA Methylase family VAA_00522 PF00459 Inositol monophosphatase family VAA_00523 PF02355 Protein export membrane protein VAA_00523 PF07549 SecD/SecF GG Motif VAA_00524 PF13721 SecD export protein N-terminal TM region VAA_00524 PF07549 SecD/SecF GG Motif VAA_00524 PF02355 Protein export membrane protein VAA_00525 PF02699 Preprotein translocase subunit VAA_00526 PF01702 Queuine tRNA-ribosyltransferase VAA_00527 PF02547 Queuosine biosynthesis protein VAA_00528 PF00571 CBS domain VAA_00529 PF00463 Isocitrate lyase family VAA_00531 PF01274 Malate synthase VAA_00532 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00532 PF03466 LysR substrate binding domain VAA_00533 PF10417 C-terminal domain of 1-Cys peroxiredoxin VAA_00533 PF00578 AhpC/TSA family VAA_00534 PF03932 CutC family VAA_00535 PF01895 PhoU domain VAA_00536 PF00005 ABC transporter VAA_00537 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00538 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00539 PF13090 Polyphosphate kinase C-terminal domain 2 VAA_00539 PF17941 Polyphosphate kinase C-terminal domain 1 VAA_00539 PF13089 Polyphosphate kinase N-terminal domain VAA_00539 PF02503 Polyphosphate kinase middle domain VAA_00540 PF02541 Ppx/GppA phosphatase family VAA_00541 PF12849 PBP superfamily domain VAA_00542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00542 PF00512 His Kinase A (phospho-acceptor) domain VAA_00542 PF00989 PAS fold VAA_00542 PF11808 Phosphate regulon sensor protein PhoR VAA_00543 PF00072 Response regulator receiver domain VAA_00543 PF00486 Transcriptional regulatory protein, C terminal VAA_00544 PF04381 Putative exonuclease, RdgC VAA_00546 PF00037 4Fe-4S binding domain VAA_00547 PF00881 Nitroreductase family VAA_00549 PF01037 Lrp/AsnC ligand binding domain VAA_00550 PF04445 Putative SAM-dependent methyltransferase VAA_00552 PF00892 EamA-like transporter family VAA_00553 PF00582 Universal stress protein family VAA_00554 PF00210 Ferritin-like domain VAA_00555 PF10625 Universal stress protein B (UspB) VAA_00558 PF06414 Zeta toxin VAA_00559 PF02653 Branched-chain amino acid transport system / permease component VAA_00560 PF00005 ABC transporter VAA_00561 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA_00563 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VAA_00563 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VAA_00564 PF00596 Class II Aldolase and Adducin N-terminal domain VAA_00565 PF02610 L-arabinose isomerase VAA_00565 PF11762 L-arabinose isomerase C-terminal domain VAA_00567 PF12833 Helix-turn-helix domain VAA_00567 PF02311 AraC-like ligand binding domain VAA_00569 PF02646 RmuC family VAA_00570 PF01209 ubiE/COQ5 methyltransferase family VAA_00571 PF02036 SCP-2 sterol transfer family VAA_00572 PF03109 ABC1 family VAA_00573 PF02416 mttA/Hcf106 family VAA_00574 PF02416 mttA/Hcf106 family VAA_00575 PF00902 Sec-independent protein translocase protein (TatC) VAA_00576 PF01026 TatD related DNase VAA_00577 PF00490 Delta-aminolevulinic acid dehydratase VAA_00578 PF01612 3'-5' exonuclease VAA_00578 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VAA_00578 PF01367 5'-3' exonuclease, C-terminal SAM fold VAA_00578 PF00476 DNA polymerase family A VAA_00579 PF01926 50S ribosome-binding GTPase VAA_00580 PF00034 Cytochrome c VAA_00582 PF04220 Der GTPase activator (YihI) VAA_00583 PF10675 Protein of unknown function (DUF2489) VAA_00584 PF06969 HemN C-terminal domain VAA_00584 PF04055 Radical SAM superfamily VAA_00585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00585 PF03466 LysR substrate binding domain VAA_00586 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VAA_00586 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VAA_00587 PF04380 Membrane fusogenic activity VAA_00588 PF00873 AcrB/AcrD/AcrF family VAA_00589 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA_00590 PF08359 YsiA-like protein, C-terminal region VAA_00590 PF00440 Bacterial regulatory proteins, tetR family VAA_00591 PF00580 UvrD/REP helicase N-terminal domain VAA_00591 PF13361 UvrD-like helicase C-terminal domain VAA_00592 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VAA_00594 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_00594 PF00005 ABC transporter VAA_00595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_00597 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00597 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA_00601 PF00072 Response regulator receiver domain VAA_00609 PF00175 Oxidoreductase NAD-binding domain VAA_00610 PF00175 Oxidoreductase NAD-binding domain VAA_00610 PF00970 Oxidoreductase FAD-binding domain VAA_00610 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_00611 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VAA_00613 PF07497 Rho termination factor, RNA-binding domain VAA_00613 PF07498 Rho termination factor, N-terminal domain VAA_00613 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_00614 PF00085 Thioredoxin VAA_00615 PF00270 DEAD/DEAH box helicase VAA_00615 PF00271 Helicase conserved C-terminal domain VAA_00616 PF02541 Ppx/GppA phosphatase family VAA_00617 PF02592 Putative vitamin uptake transporter VAA_00618 PF00625 Guanylate kinase VAA_00619 PF01192 RNA polymerase Rpb6 VAA_00620 PF02824 TGS domain VAA_00620 PF04607 Region found in RelA / SpoT proteins VAA_00620 PF13291 ACT domain VAA_00621 PF00270 DEAD/DEAH box helicase VAA_00621 PF00271 Helicase conserved C-terminal domain VAA_00621 PF17191 RecG wedge domain VAA_00622 PF00860 Permease family VAA_00623 PF00512 His Kinase A (phospho-acceptor) domain VAA_00623 PF00672 HAMP domain VAA_00623 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00624 PF00486 Transcriptional regulatory protein, C terminal VAA_00624 PF00072 Response regulator receiver domain VAA_00625 PF06483 Chitinase C VAA_00625 PF00704 Glycosyl hydrolases family 18 VAA_00627 PF00881 Nitroreductase family VAA_00629 PF03466 LysR substrate binding domain VAA_00629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00631 PF06942 GlpM protein VAA_00634 PF03449 Transcription elongation factor, N-terminal VAA_00634 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA_00635 PF17674 HHH domain VAA_00635 PF00575 S1 RNA binding domain VAA_00635 PF09371 Tex-like protein N-terminal domain VAA_00635 PF16921 Tex protein YqgF-like domain VAA_00637 PF00561 alpha/beta hydrolase fold VAA_00638 PF00561 alpha/beta hydrolase fold VAA_00639 PF00156 Phosphoribosyl transferase domain VAA_00640 PF01106 NifU-like domain VAA_00640 PF01521 Iron-sulphur cluster biosynthesis VAA_00641 PF00293 NUDIX domain VAA_00642 PF00459 Inositol monophosphatase family VAA_00643 PF01203 Type II secretion system (T2SS), protein N VAA_00644 PF04612 Type II secretion system (T2SS), protein M VAA_00645 PF12693 GspL periplasmic domain VAA_00645 PF05134 Type II secretion system (T2SS), protein L VAA_00646 PF03934 Type II secretion system (T2SS), protein K VAA_00647 PF07963 Prokaryotic N-terminal methylation motif VAA_00647 PF11612 Type II secretion system (T2SS), protein J VAA_00648 PF02501 Type II secretion system (T2SS), protein I VAA_00648 PF07963 Prokaryotic N-terminal methylation motif VAA_00649 PF12019 Type II transport protein GspH VAA_00650 PF07963 Prokaryotic N-terminal methylation motif VAA_00650 PF08334 Type II secretion system (T2SS), protein G VAA_00651 PF00482 Type II secretion system (T2SS), protein F VAA_00652 PF00437 Type II/IV secretion system protein VAA_00653 PF03958 Bacterial type II/III secretion system short domain VAA_00653 PF00263 Bacterial type II and III secretion system protein VAA_00654 PF11356 Type II secretion system protein C VAA_00655 PF01479 S4 domain VAA_00656 PF01430 Hsp33 protein VAA_00658 PF01293 Phosphoenolpyruvate carboxykinase VAA_00660 PF02580 D-Tyr-tRNA(Tyr) deacylase VAA_00661 PF03631 Virulence factor BrkB VAA_00663 PF03951 Glutamine synthetase, beta-Grasp domain VAA_00663 PF00120 Glutamine synthetase, catalytic domain VAA_00666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00666 PF00512 His Kinase A (phospho-acceptor) domain VAA_00666 PF00989 PAS fold VAA_00669 PF00563 EAL domain VAA_00669 PF00990 Diguanylate cyclase, GGDEF domain VAA_00669 PF03707 Bacterial signalling protein N terminal repeat VAA_00669 PF13188 PAS domain VAA_0067 PF00158 Sigma-54 interaction domain VAA_0067 PF00072 Response regulator receiver domain VAA_0067 PF02954 Bacterial regulatory protein, Fis family VAA_00670 PF00962 Adenosine/AMP deaminase VAA_00671 PF13361 UvrD-like helicase C-terminal domain VAA_00671 PF00580 UvrD/REP helicase N-terminal domain VAA_00675 PF13657 HipA N-terminal domain VAA_00675 PF07804 HipA-like C-terminal domain VAA_00677 PF04546 Sigma-70, non-essential region VAA_00677 PF03979 Sigma-70 factor, region 1.1 VAA_00677 PF04545 Sigma-70, region 4 VAA_00677 PF04542 Sigma-70 region 2 VAA_00677 PF04539 Sigma-70 region 3 VAA_00677 PF00140 Sigma-70 factor, region 1.2 VAA_00678 PF01807 CHC2 zinc finger VAA_00678 PF08275 DNA primase catalytic core, N-terminal domain VAA_00678 PF08278 DNA primase DnaG DnaB-binding VAA_00678 PF10410 DnaB-helicase binding domain of primase VAA_00679 PF09424 Yqey-like protein VAA_00685 PF02660 Glycerol-3-phosphate acyltransferase VAA_00686 PF02152 Dihydroneopterin aldolase VAA_00687 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VAA_00688 PF02673 Bacitracin resistance protein BacA VAA_00689 PF04977 Septum formation initiator VAA_00690 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VAA_00691 PF02542 YgbB family VAA_00692 PF01142 tRNA pseudouridine synthase D (TruD) VAA_00693 PF01975 Survival protein SurE VAA_00695 PF01551 Peptidase family M23 VAA_00695 PF01476 LysM domain VAA_00696 PF04539 Sigma-70 region 3 VAA_00696 PF04542 Sigma-70 region 2 VAA_00696 PF04545 Sigma-70, region 4 VAA_00696 PF00140 Sigma-70 factor, region 1.2 VAA_00697 PF01624 MutS domain I VAA_00697 PF05188 MutS domain II VAA_00697 PF00488 MutS domain V VAA_00697 PF05190 MutS family domain IV VAA_00697 PF05192 MutS domain III VAA_00698 PF00291 Pyridoxal-phosphate dependent enzyme VAA_00700 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00701 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00702 PF12857 TOBE-like domain VAA_00702 PF00005 ABC transporter VAA_00703 PF02464 Competence-damaged protein VAA_00704 PF00154 recA bacterial DNA recombination protein VAA_00705 PF02631 RecX family VAA_00706 PF01411 tRNA synthetases class II (A) VAA_00706 PF02272 DHHA1 domain VAA_00706 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VAA_00707 PF13840 ACT domain VAA_00707 PF01842 ACT domain VAA_00707 PF00696 Amino acid kinase family VAA_00709 PF04277 Oxaloacetate decarboxylase, gamma chain VAA_00710 PF02436 Conserved carboxylase domain VAA_00710 PF00364 Biotin-requiring enzyme VAA_00710 PF00682 HMGL-like VAA_00711 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VAA_00712 PF08240 Alcohol dehydrogenase GroES-like domain VAA_00712 PF00107 Zinc-binding dehydrogenase VAA_00713 PF09335 SNARE associated Golgi protein VAA_00714 PF00675 Insulinase (Peptidase family M16) VAA_00714 PF05193 Peptidase M16 inactive domain VAA_00715 PF04262 Glutamate-cysteine ligase VAA_00718 PF00571 CBS domain VAA_00718 PF03471 Transporter associated domain VAA_00718 PF01595 Cyclin M transmembrane N-terminal domain VAA_00719 PF01578 Cytochrome C assembly protein VAA_00720 PF00448 SRP54-type protein, GTPase domain VAA_00720 PF02978 Signal peptide binding domain VAA_00720 PF02881 SRP54-type protein, helical bundle domain VAA_00723 PF01746 tRNA (Guanine-1)-methyltransferase VAA_00724 PF01245 Ribosomal protein L19 VAA_00725 PF03884 DNA gyrase inhibitor YacG VAA_00726 PF07072 Cell division protein VAA_00727 PF01121 Dephospho-CoA kinase VAA_00728 PF06750 Bacterial Peptidase A24 N-terminal domain VAA_00728 PF01478 Type IV leader peptidase family VAA_00729 PF00482 Type II secretion system (T2SS), protein F VAA_00731 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VAA_00731 PF00437 Type II/IV secretion system protein VAA_00733 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VAA_00733 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VAA_00734 PF01510 N-acetylmuramoyl-L-alanine amidase VAA_00735 PF00258 Flavodoxin VAA_00736 PF00589 Phage integrase family VAA_00736 PF02899 Phage integrase, N-terminal SAM-like domain VAA_00737 PF10411 Disulfide bond isomerase protein N-terminus VAA_00737 PF13098 Thioredoxin-like domain VAA_00738 PF01368 DHH family VAA_00738 PF02272 DHHA1 domain VAA_00738 PF17768 RecJ OB domain VAA_00739 PF00392 Bacterial regulatory proteins, gntR family VAA_00739 PF07729 FCD domain VAA_00740 PF00456 Transketolase, thiamine diphosphate binding domain VAA_00740 PF17831 Pyruvate dehydrogenase E1 component middle domain VAA_00741 PF00364 Biotin-requiring enzyme VAA_00741 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VAA_00741 PF02817 e3 binding domain VAA_00742 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA_00742 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_00743 PF00440 Bacterial regulatory proteins, tetR family VAA_00744 PF00156 Phosphoribosyl transferase domain VAA_00745 PF00484 Carbonic anhydrase VAA_00746 PF01740 STAS domain VAA_00746 PF00916 Sulfate permease family VAA_00747 PF00005 ABC transporter VAA_00748 PF01061 ABC-2 type transporter VAA_00750 PF02569 Pantoate-beta-alanine ligase VAA_00751 PF02548 Ketopantoate hydroxymethyltransferase VAA_00752 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VAA_00753 PF12627 Probable RNA and SrmB- binding site of polymerase A VAA_00753 PF12626 Polymerase A arginine-rich C-terminus VAA_00753 PF01743 Poly A polymerase head domain VAA_00754 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA_00755 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA_00756 PF01258 Prokaryotic dksA/traR C4-type zinc finger VAA_00757 PF03749 Sugar fermentation stimulation protein RE domain VAA_00757 PF17746 SfsA N-terminal OB domain VAA_00758 PF00270 DEAD/DEAH box helicase VAA_00758 PF04408 Helicase associated domain (HA2) VAA_00758 PF00271 Helicase conserved C-terminal domain VAA_00758 PF08482 ATP-dependent helicase C-terminal VAA_00759 PF00905 Penicillin binding protein transpeptidase domain VAA_00759 PF00912 Transglycosylase VAA_00759 PF14814 Bifunctional transglycosylase second domain VAA_00760 PF01734 Patatin-like phospholipase VAA_00761 PF00330 Aconitase family (aconitate hydratase) VAA_00761 PF06434 Aconitate hydratase 2 N-terminus VAA_00761 PF11791 Aconitate B N-terminal domain VAA_00762 PF02595 Glycerate kinase family VAA_00763 PF02447 GntP family permease VAA_00764 PF13556 PucR C-terminal helix-turn-helix domain VAA_00764 PF05651 Putative sugar diacid recognition VAA_00764 PF17853 GGDEF-like domain VAA_00765 PF06062 Uncharacterised protein family (UPF0231) VAA_00766 PF00543 Nitrogen regulatory protein P-II VAA_00767 PF00909 Ammonium Transporter Family VAA_00768 PF13416 Bacterial extracellular solute-binding protein VAA_00770 PF08402 TOBE domain VAA_00770 PF00005 ABC transporter VAA_00771 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA_00771 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA_00771 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA_00772 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VAA_00772 PF06165 Glycosyltransferase family 36 VAA_00773 PF00728 Glycosyl hydrolase family 20, catalytic domain VAA_00773 PF02838 Glycosyl hydrolase family 20, domain 2 VAA_00774 PF01869 BadF/BadG/BcrA/BcrD ATPase family VAA_00776 PF00005 ABC transporter VAA_00776 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_00777 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_00777 PF00005 ABC transporter VAA_00778 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00778 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA_00779 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_00782 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00782 PF00512 His Kinase A (phospho-acceptor) domain VAA_00782 PF00072 Response regulator receiver domain VAA_00782 PF09308 LuxQ, periplasmic VAA_00783 PF08468 Methyltransferase small domain N-terminal VAA_00783 PF05175 Methyltransferase small domain VAA_00784 PF01594 AI-2E family transporter VAA_00785 PF00202 Aminotransferase class-III VAA_00788 PF00873 AcrB/AcrD/AcrF family VAA_00789 PF08525 Opacity-associated protein A N-terminal motif VAA_00789 PF01476 LysM domain VAA_00789 PF01551 Peptidase family M23 VAA_00790 PF01479 S4 domain VAA_00790 PF00579 tRNA synthetases class I (W and Y) VAA_00792 PF01769 Divalent cation transporter VAA_00792 PF00571 CBS domain VAA_00792 PF03448 MgtE intracellular N domain VAA_00793 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VAA_00794 PF13609 Gram-negative porin VAA_00795 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA_00795 PF03449 Transcription elongation factor, N-terminal VAA_00796 PF01985 CRS1 / YhbY (CRM) domain VAA_00797 PF01728 FtsJ-like methyltransferase VAA_00798 PF01434 Peptidase family M41 VAA_00798 PF17862 AAA+ lid domain VAA_00798 PF06480 FtsH Extracellular VAA_00798 PF00004 ATPase family associated with various cellular activities (AAA) VAA_00799 PF00809 Pterin binding enzyme VAA_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA_00801 PF03840 Preprotein translocase SecG subunit VAA_00802 PF17384 RimP C-terminal SH3 domain VAA_00802 PF02576 RimP N-terminal domain VAA_00803 PF13184 NusA-like KH domain VAA_00803 PF08529 NusA N-terminal domain VAA_00803 PF00575 S1 RNA binding domain VAA_00804 PF11987 Translation-initiation factor 2 VAA_00804 PF00009 Elongation factor Tu GTP binding domain VAA_00804 PF08364 Bacterial translation initiation factor IF-2 associated region VAA_00804 PF04760 Translation initiation factor IF-2, N-terminal region VAA_00805 PF02033 Ribosome-binding factor A VAA_00806 PF16198 tRNA pseudouridylate synthase B C-terminal domain VAA_00806 PF01509 TruB family pseudouridylate synthase (N terminal domain) VAA_00806 PF09157 Pseudouridine synthase II TruB, C-terminal VAA_00807 PF00312 Ribosomal protein S15 VAA_00808 PF01138 3' exoribonuclease family, domain 1 VAA_00808 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VAA_00808 PF00575 S1 RNA binding domain VAA_00808 PF00013 KH domain VAA_00808 PF03725 3' exoribonuclease family, domain 2 VAA_00809 PF07719 Tetratricopeptide repeat VAA_00809 PF13181 Tetratricopeptide repeat VAA_00810 PF01047 MarR family VAA_00814 PF00990 Diguanylate cyclase, GGDEF domain VAA_00814 PF03707 Bacterial signalling protein N terminal repeat VAA_00814 PF00563 EAL domain VAA_00815 PF12724 Flavodoxin domain VAA_00816 PF02386 Cation transport protein VAA_00817 PF01205 Uncharacterized protein family UPF0029 VAA_00817 PF09186 Domain of unknown function (DUF1949) VAA_00818 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VAA_00818 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VAA_00818 PF00378 Enoyl-CoA hydratase/isomerase VAA_00819 PF02803 Thiolase, C-terminal domain VAA_00819 PF00108 Thiolase, N-terminal domain VAA_00820 PF03466 LysR substrate binding domain VAA_00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00822 PF07690 Major Facilitator Superfamily VAA_00823 PF12804 MobA-like NTP transferase domain VAA_00823 PF14602 Hexapeptide repeat of succinyl-transferase VAA_00823 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_00824 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VAA_00824 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VAA_00825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_00825 PF02874 ATP synthase alpha/beta family, beta-barrel domain VAA_00826 PF00231 ATP synthase VAA_00827 PF02874 ATP synthase alpha/beta family, beta-barrel domain VAA_00827 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_00827 PF00306 ATP synthase alpha/beta chain, C terminal domain VAA_00828 PF00213 ATP synthase delta (OSCP) subunit VAA_00829 PF00430 ATP synthase B/B' CF(0) VAA_00830 PF00137 ATP synthase subunit C VAA_00831 PF00119 ATP synthase A chain VAA_00832 PF03899 ATP synthase I chain VAA_00833 PF02195 ParB-like nuclease domain VAA_00833 PF17762 HTH domain found in ParB protein VAA_00834 PF13614 AAA domain VAA_00835 PF02527 rRNA small subunit methyltransferase G VAA_00836 PF01134 Glucose inhibited division protein A VAA_00836 PF13932 GidA associated domain VAA_00837 PF00258 Flavodoxin VAA_00838 PF10396 GTP-binding protein TrmE N-terminus VAA_00838 PF12631 MnmE helical domain VAA_00838 PF01926 50S ribosome-binding GTPase VAA_00839 PF02096 60Kd inner membrane protein VAA_00839 PF14849 YidC periplasmic domain VAA_00840 PF01809 Putative membrane protein insertion efficiency factor VAA_00841 PF00825 Ribonuclease P VAA_00842 PF00468 Ribosomal protein L34 VAA_00843 PF00005 ABC transporter VAA_00844 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00845 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_00846 PF00308 Bacterial dnaA protein VAA_00846 PF11638 DnaA N-terminal domain VAA_00846 PF08299 Bacterial dnaA protein helix-turn-helix VAA_00847 PF00712 DNA polymerase III beta subunit, N-terminal domain VAA_00847 PF02767 DNA polymerase III beta subunit, central domain VAA_00847 PF02768 DNA polymerase III beta subunit, C-terminal domain VAA_00848 PF02463 RecF/RecN/SMC N terminal domain VAA_00849 PF18053 DNA gyrase B subunit insert domain VAA_00849 PF00204 DNA gyrase B VAA_00849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00849 PF01751 Toprim domain VAA_00849 PF00986 DNA gyrase B subunit, carboxyl terminus VAA_00852 PF00011 Hsp20/alpha crystallin family VAA_00853 PF00155 Aminotransferase class I and II VAA_00854 PF05746 DALR anticodon binding domain VAA_00854 PF02092 Glycyl-tRNA synthetase beta subunit VAA_00855 PF02091 Glycyl-tRNA synthetase alpha subunit VAA_00857 PF01169 Uncharacterized protein family UPF0016 VAA_00859 PF01206 Sulfurtransferase TusA VAA_00862 PF03466 LysR substrate binding domain VAA_00862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00864 PF00107 Zinc-binding dehydrogenase VAA_00864 PF08240 Alcohol dehydrogenase GroES-like domain VAA_00865 PF00585 C-terminal regulatory domain of Threonine dehydratase VAA_00865 PF00291 Pyridoxal-phosphate dependent enzyme VAA_00866 PF00920 Dehydratase family VAA_00867 PF01063 Amino-transferase class IV VAA_00870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_00870 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_00870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_00872 PF01078 Magnesium chelatase, subunit ChlI VAA_00872 PF13335 Magnesium chelatase, subunit ChlI C-terminal VAA_00886 PF00294 pfkB family carbohydrate kinase VAA_00887 PF00563 EAL domain VAA_00887 PF00990 Diguanylate cyclase, GGDEF domain VAA_00887 PF13188 PAS domain VAA_00887 PF03707 Bacterial signalling protein N terminal repeat VAA_00888 PF00194 Eukaryotic-type carbonic anhydrase VAA_00890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00890 PF02743 Cache domain VAA_00890 PF00672 HAMP domain VAA_00892 PF00491 Arginase family VAA_00893 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VAA_00893 PF17944 Arginine decarboxylase C-terminal helical extension VAA_00893 PF17810 Arginine decarboxylase helical bundle domain VAA_00895 PF00005 ABC transporter VAA_00895 PF00571 CBS domain VAA_00896 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00897 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VAA_00901 PF01769 Divalent cation transporter VAA_00901 PF00571 CBS domain VAA_00901 PF03448 MgtE intracellular N domain VAA_00902 PF13840 ACT domain VAA_00902 PF00696 Amino acid kinase family VAA_00903 PF06339 Ectoine synthase VAA_00904 PF00202 Aminotransferase class-III VAA_00905 PF00583 Acetyltransferase (GNAT) family VAA_00907 PF01467 Cytidylyltransferase-like VAA_00908 PF02540 NAD synthase VAA_00916 PF00672 HAMP domain VAA_00916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00916 PF02743 Cache domain VAA_00917 PF00128 Alpha amylase, catalytic domain VAA_00920 PF02743 Cache domain VAA_00920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00920 PF00672 HAMP domain VAA_00921 PF17863 AAA lid domain VAA_00921 PF07726 ATPase family associated with various cellular activities (AAA) VAA_00922 PF01882 Protein of unknown function DUF58 VAA_00925 PF13519 von Willebrand factor type A domain VAA_00928 PF00990 Diguanylate cyclase, GGDEF domain VAA_00930 PF01844 HNH endonuclease VAA_00931 PF12843 Putative quorum-sensing-regulated virulence factor VAA_00932 PF00884 Sulfatase VAA_00934 PF01219 Prokaryotic diacylglycerol kinase VAA_00935 PF00107 Zinc-binding dehydrogenase VAA_00935 PF08240 Alcohol dehydrogenase GroES-like domain VAA_00936 PF00155 Aminotransferase class I and II VAA_00937 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00937 PF03466 LysR substrate binding domain VAA_00938 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA_00940 PF07690 Major Facilitator Superfamily VAA_00941 PF00072 Response regulator receiver domain VAA_00941 PF00196 Bacterial regulatory proteins, luxR family VAA_00942 PF07730 Histidine kinase VAA_00942 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00942 PF05231 MASE1 VAA_00943 PF07690 Major Facilitator Superfamily VAA_00947 PF04013 Putative SAM-dependent RNA methyltransferase VAA_00950 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA_00950 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_00951 PF01022 Bacterial regulatory protein, arsR family VAA_00952 PF01758 Sodium Bile acid symporter family VAA_00953 PF01022 Bacterial regulatory protein, arsR family VAA_00954 PF01740 STAS domain VAA_00954 PF00916 Sulfate permease family VAA_00955 PF00582 Universal stress protein family VAA_00956 PF17327 Acyl homoserine lactone synthase VAA_00957 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00957 PF00072 Response regulator receiver domain VAA_00958 PF00478 IMP dehydrogenase / GMP reductase domain VAA_00959 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA_00959 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_0096 PF18607 ParA helix turn helix domain VAA_0096 PF13614 AAA domain VAA_00964 PF00313 'Cold-shock' DNA-binding domain VAA_00965 PF07152 YaeQ protein VAA_00966 PF00042 Globin VAA_00966 PF00970 Oxidoreductase FAD-binding domain VAA_00966 PF00175 Oxidoreductase NAD-binding domain VAA_00967 PF00158 Sigma-54 interaction domain VAA_00967 PF01590 GAF domain VAA_00970 PF01773 Na+ dependent nucleoside transporter N-terminus VAA_00970 PF07670 Nucleoside recognition VAA_00970 PF07662 Na+ dependent nucleoside transporter C-terminus VAA_00971 PF03476 MOSC N-terminal beta barrel domain VAA_00971 PF03473 MOSC domain VAA_00971 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_00973 PF05958 tRNA (Uracil-5-)-methyltransferase VAA_00974 PF05661 Protein of unknown function (DUF808) VAA_00982 PF03193 RsgA GTPase VAA_00984 PF08241 Methyltransferase domain VAA_00985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00985 PF00672 HAMP domain VAA_00985 PF12729 Four helix bundle sensory module for signal transduction VAA_00989 PF02525 Flavodoxin-like fold VAA_00990 PF00248 Aldo/keto reductase family VAA_00991 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00991 PF03466 LysR substrate binding domain VAA_00994 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA_00994 PF00529 HlyD membrane-fusion protein of T1SS VAA_00997 PF02347 Glycine cleavage system P-protein VAA_00999 PF00464 Serine hydroxymethyltransferase VAA_01001 PF01571 Aminomethyltransferase folate-binding domain VAA_01001 PF08669 Glycine cleavage T-protein C-terminal barrel domain VAA_01003 PF00675 Insulinase (Peptidase family M16) VAA_01003 PF05193 Peptidase M16 inactive domain VAA_01005 PF02378 Phosphotransferase system, EIIC VAA_01005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_01006 PF00294 pfkB family carbohydrate kinase VAA_01007 PF00381 PTS HPr component phosphorylation site VAA_01007 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_01008 PF00356 Bacterial regulatory proteins, lacI family VAA_01008 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA_01009 PF12320 Type 5 capsule protein repressor C-terminal domain VAA_01009 PF00149 Calcineurin-like phosphoesterase VAA_01010 PF13476 AAA domain VAA_01011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01011 PF00072 Response regulator receiver domain VAA_01012 PF00155 Aminotransferase class I and II VAA_01014 PF00654 Voltage gated chloride channel VAA_01015 PF02492 CobW/HypB/UreG, nucleotide-binding domain VAA_01015 PF07683 Cobalamin synthesis protein cobW C-terminal domain VAA_01016 PF00005 ABC transporter VAA_01017 PF12704 MacB-like periplasmic core domain VAA_01017 PF02687 FtsX-like permease family VAA_01017 PF00005 ABC transporter VAA_01018 PF00005 ABC transporter VAA_01018 PF12704 MacB-like periplasmic core domain VAA_01018 PF02687 FtsX-like permease family VAA_01021 PF01926 50S ribosome-binding GTPase VAA_01028 PF03608 PTS system enzyme II sorbitol-specific factor VAA_01029 PF03612 Sorbitol phosphotransferase enzyme II N-terminus VAA_01029 PF07663 Sorbitol phosphotransferase enzyme II C-terminus VAA_01030 PF03829 PTS system glucitol/sorbitol-specific IIA component VAA_01031 PF00106 short chain dehydrogenase VAA_01032 PF08220 DeoR-like helix-turn-helix domain VAA_01032 PF00455 DeoR C terminal sensor domain VAA_01033 PF03608 PTS system enzyme II sorbitol-specific factor VAA_01034 PF03612 Sorbitol phosphotransferase enzyme II N-terminus VAA_01034 PF07663 Sorbitol phosphotransferase enzyme II C-terminus VAA_01035 PF03829 PTS system glucitol/sorbitol-specific IIA component VAA_01036 PF17912 MalK OB fold domain VAA_01036 PF00005 ABC transporter VAA_01036 PF03459 TOBE domain VAA_01039 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_01039 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VAA_01041 PF13416 Bacterial extracellular solute-binding protein VAA_01042 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01043 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01044 PF16657 Maltogenic Amylase, C-terminal domain VAA_01044 PF02903 Alpha amylase, N-terminal ig-like domain VAA_01044 PF00128 Alpha amylase, catalytic domain VAA_01049 PF13721 SecD export protein N-terminal TM region VAA_01049 PF02355 Protein export membrane protein VAA_01049 PF07549 SecD/SecF GG Motif VAA_01050 PF07549 SecD/SecF GG Motif VAA_01050 PF02355 Protein export membrane protein VAA_01052 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA_01053 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VAA_01054 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VAA_01054 PF00384 Molybdopterin oxidoreductase VAA_01054 PF01568 Molydopterin dinucleotide binding domain VAA_01056 PF13187 4Fe-4S dicluster domain VAA_01056 PF12838 4Fe-4S dicluster domain VAA_01058 PF07730 Histidine kinase VAA_01058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01058 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VAA_01058 PF00672 HAMP domain VAA_01059 PF00196 Bacterial regulatory proteins, luxR family VAA_01059 PF00072 Response regulator receiver domain VAA_01060 PF03606 C4-dicarboxylate anaerobic carrier VAA_01064 PF12849 PBP superfamily domain VAA_01066 PF08206 Ribonuclease B OB domain VAA_01066 PF00575 S1 RNA binding domain VAA_01066 PF00773 RNB domain VAA_01067 PF00270 DEAD/DEAH box helicase VAA_01067 PF03880 DbpA RNA binding domain VAA_01067 PF00271 Helicase conserved C-terminal domain VAA_01068 PF02824 TGS domain VAA_01068 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA_01068 PF03129 Anticodon binding domain VAA_01068 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VAA_01069 PF05198 Translation initiation factor IF-3, N-terminal domain VAA_01069 PF00707 Translation initiation factor IF-3, C-terminal domain VAA_01070 PF01632 Ribosomal protein L35 VAA_01071 PF00453 Ribosomal protein L20 VAA_01072 PF13495 Phage integrase, N-terminal SAM-like domain VAA_01072 PF00589 Phage integrase family VAA_01077 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VAA_01078 PF13609 Gram-negative porin VAA_01080 PF04354 ZipA, C-terminal FtsZ-binding domain VAA_01082 PF00291 Pyridoxal-phosphate dependent enzyme VAA_01083 PF00381 PTS HPr component phosphorylation site VAA_01084 PF05524 PEP-utilising enzyme, N-terminal VAA_01084 PF02896 PEP-utilising enzyme, TIM barrel domain VAA_01084 PF00391 PEP-utilising enzyme, mobile domain VAA_01085 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VAA_01086 PF01494 FAD binding domain VAA_01087 PF00919 Uncharacterized protein family UPF0004 VAA_01087 PF04055 Radical SAM superfamily VAA_01087 PF01938 TRAM domain VAA_01088 PF02562 PhoH-like protein VAA_01090 PF03471 Transporter associated domain VAA_01090 PF00571 CBS domain VAA_01091 PF00795 Carbon-nitrogen hydrolase VAA_01092 PF07295 Zinc-ribbon containing domain VAA_01093 PF00133 tRNA synthetases class I (I, L, M and V) VAA_01093 PF08264 Anticodon-binding domain of tRNA VAA_01093 PF13603 Leucyl-tRNA synthetase, Domain 2 VAA_01094 PF04390 Lipopolysaccharide-assembly VAA_01095 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VAA_01095 PF06144 DNA polymerase III, delta subunit VAA_01097 PF02590 Predicted SPOUT methyltransferase VAA_01098 PF03717 Penicillin-binding Protein dimerisation domain VAA_01098 PF00905 Penicillin binding protein transpeptidase domain VAA_01099 PF01098 Cell cycle protein VAA_01100 PF03330 Lytic transglycolase VAA_01100 PF05036 Sporulation related domain VAA_01101 PF00768 D-alanyl-D-alanine carboxypeptidase VAA_01101 PF07943 Penicillin-binding protein 5, C-terminal domain VAA_01102 PF04359 Protein of unknown function (DUF493) VAA_01103 PF03099 Biotin/lipoate A/B protein ligase family VAA_01106 PF00464 Serine hydroxymethyltransferase VAA_01109 PF02397 Bacterial sugar transferase VAA_01111 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VAA_01111 PF10531 SLBB domain VAA_01111 PF02563 Polysaccharide biosynthesis/export protein VAA_01117 PF12561 ToxR activated gene A lipoprotein domain VAA_01117 PF17945 Beta/Gamma crystallin VAA_01118 PF03808 Glycosyl transferase WecB/TagA/CpsF family VAA_01120 PF06426 Serine acetyltransferase, N-terminal VAA_01120 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_01127 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VAA_01127 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VAA_01127 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VAA_01128 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VAA_01128 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VAA_01128 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VAA_01129 PF02350 UDP-N-acetylglucosamine 2-epimerase VAA_01132 PF01451 Low molecular weight phosphotyrosine protein phosphatase VAA_01133 PF00873 AcrB/AcrD/AcrF family VAA_01135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA_01138 PF00672 HAMP domain VAA_01138 PF00512 His Kinase A (phospho-acceptor) domain VAA_01138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01139 PF00072 Response regulator receiver domain VAA_01139 PF00486 Transcriptional regulatory protein, C terminal VAA_01140 PF00128 Alpha amylase, catalytic domain VAA_01140 PF16657 Maltogenic Amylase, C-terminal domain VAA_01141 PF00128 Alpha amylase, catalytic domain VAA_01141 PF16657 Maltogenic Amylase, C-terminal domain VAA_01142 PF02378 Phosphotransferase system, EIIC VAA_01142 PF00367 phosphotransferase system, EIIB VAA_01143 PF00356 Bacterial regulatory proteins, lacI family VAA_01146 PF00005 ABC transporter VAA_01146 PF09383 NIL domain VAA_01147 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01149 PF03180 NLPA lipoprotein VAA_01150 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VAA_01151 PF07348 Syd protein (SUKH-2) VAA_01152 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VAA_01152 PF14489 QueF-like protein VAA_01154 PF00990 Diguanylate cyclase, GGDEF domain VAA_01155 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VAA_01155 PF11892 Domain of unknown function (DUF3412) VAA_01155 PF03641 Possible lysine decarboxylase VAA_01156 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VAA_01156 PF01367 5'-3' exonuclease, C-terminal SAM fold VAA_01158 PF04241 Protein of unknown function (DUF423) VAA_01159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01159 PF03466 LysR substrate binding domain VAA_01160 PF02926 THUMP domain VAA_01160 PF02568 Thiamine biosynthesis protein (ThiI) VAA_01161 PF00691 OmpA family VAA_01161 PF13677 Membrane MotB of proton-channel complex MotA/MotB VAA_01161 PF00691 OmpA family VAA_01161 PF13677 Membrane MotB of proton-channel complex MotA/MotB VAA_01162 PF01618 MotA/TolQ/ExbB proton channel family VAA_01164 PF02609 Exonuclease VII small subunit VAA_01165 PF00348 Polyprenyl synthetase VAA_01166 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VAA_01166 PF02780 Transketolase, C-terminal domain VAA_01166 PF02779 Transketolase, pyrimidine binding domain VAA_01167 PF00849 RNA pseudouridylate synthase VAA_01168 PF04287 tRNA pseudouridine synthase C VAA_01172 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VAA_01173 PF00444 Ribosomal protein L36 VAA_01174 PF01197 Ribosomal protein L31 VAA_01175 PF01980 tRNA-methyltransferase O VAA_01175 PF18389 TrmO C-terminal domain VAA_01176 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA_01176 PF04073 Aminoacyl-tRNA editing domain VAA_01176 PF03129 Anticodon binding domain VAA_01177 PF04391 Protein of unknown function (DUF533) VAA_01178 PF06786 Uncharacterised protein family (UPF0253) VAA_01182 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VAA_01182 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VAA_01182 PF02769 AIR synthase related protein, C-terminal domain VAA_01183 PF01464 Transglycosylase SLT domain VAA_01183 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01185 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_01187 PF08240 Alcohol dehydrogenase GroES-like domain VAA_01187 PF00107 Zinc-binding dehydrogenase VAA_01188 PF00756 Putative esterase VAA_01190 PF03806 AbgT putative transporter family VAA_01195 PF07963 Prokaryotic N-terminal methylation motif VAA_01195 PF00114 Pilin (bacterial filament) VAA_01196 PF01556 DnaJ C terminal domain VAA_01196 PF00226 DnaJ domain VAA_01196 PF00684 DnaJ central domain VAA_01197 PF00012 Hsp70 protein VAA_01198 PF01025 GrpE VAA_01199 PF01513 ATP-NAD kinase VAA_01201 PF13737 Transposase DDE domain VAA_01202 PF01212 Beta-eliminating lyase VAA_01203 PF02463 RecF/RecN/SMC N terminal domain VAA_01204 PF04355 SmpA / OmlA family VAA_01205 PF03658 RnfH family Ubiquitin VAA_01206 PF03364 Polyketide cyclase / dehydrase and lipid transport VAA_01207 PF01668 SmpB protein VAA_01208 PF00589 Phage integrase family VAA_01208 PF13356 Arm DNA-binding domain VAA_01209 PF02384 N-6 DNA Methylase VAA_01209 PF12161 HsdM N-terminal domain VAA_01212 PF01420 Type I restriction modification DNA specificity domain VAA_01213 PF04851 Type III restriction enzyme, res subunit VAA_01213 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VAA_01213 PF00271 Helicase conserved C-terminal domain VAA_01213 PF08463 EcoEI R protein C-terminal VAA_01214 PF04471 Restriction endonuclease VAA_01214 PF14338 Mrr N-terminal domain VAA_01217 PF04002 RadC-like JAB domain VAA_01243 PF17151 Periplasmic sensor domain VAA_01243 PF00990 Diguanylate cyclase, GGDEF domain VAA_01244 PF00455 DeoR C terminal sensor domain VAA_01244 PF08220 DeoR-like helix-turn-helix domain VAA_01245 PF00196 Bacterial regulatory proteins, luxR family VAA_01245 PF03472 Autoinducer binding domain VAA_01246 PF00765 Autoinducer synthase VAA_01249 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01250 PF14785 Maltose transport system permease protein MalF P2 domain VAA_01250 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01251 PF01547 Bacterial extracellular solute-binding protein VAA_01252 PF08402 TOBE domain VAA_01252 PF00005 ABC transporter VAA_01253 PF00196 Bacterial regulatory proteins, luxR family VAA_01256 PF01584 CheW-like domain VAA_01256 PF00072 Response regulator receiver domain VAA_01257 PF04237 YjbR VAA_01261 PF00563 EAL domain VAA_01261 PF03707 Bacterial signalling protein N terminal repeat VAA_01261 PF00990 Diguanylate cyclase, GGDEF domain VAA_01264 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01264 PF03466 LysR substrate binding domain VAA_01265 PF00563 EAL domain VAA_01265 PF00990 Diguanylate cyclase, GGDEF domain VAA_01267 PF05726 Pirin C-terminal cupin domain VAA_01267 PF02678 Pirin VAA_01269 PF06865 Pyrimidine/purine nucleoside phosphorylase VAA_01271 PF00793 DAHP synthetase I family VAA_01272 PF00005 ABC transporter VAA_01273 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01274 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01275 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01277 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA_01277 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA_01277 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA_01277 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA_01281 PF01557 Fumarylacetoacetate (FAA) hydrolase family VAA_012815 PF00271 Helicase conserved C-terminal domain VAA_012815 PF00270 DEAD/DEAH box helicase VAA_012817 PF13419 Haloacid dehalogenase-like hydrolase VAA_01283 PF00892 EamA-like transporter family VAA_01284 PF00462 Glutaredoxin VAA_01287 PF07690 Major Facilitator Superfamily VAA_01288 PF03466 LysR substrate binding domain VAA_01288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01290 PF08448 PAS fold VAA_01290 PF00990 Diguanylate cyclase, GGDEF domain VAA_01290 PF00563 EAL domain VAA_01290 PF08447 PAS fold VAA_01291 PF08525 Opacity-associated protein A N-terminal motif VAA_01291 PF01476 LysM domain VAA_01291 PF01551 Peptidase family M23 VAA_01293 PF00916 Sulfate permease family VAA_01293 PF01740 STAS domain VAA_01296 PF00990 Diguanylate cyclase, GGDEF domain VAA_01296 PF07694 5TMR of 5TMR-LYT VAA_01297 PF00005 ABC transporter VAA_01298 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01299 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01300 PF12849 PBP superfamily domain VAA_01302 PF00155 Aminotransferase class I and II VAA_01302 PF00392 Bacterial regulatory proteins, gntR family VAA_01303 PF13302 Acetyltransferase (GNAT) domain VAA_01306 PF02868 Thermolysin metallopeptidase, alpha-helical domain VAA_01306 PF04151 Bacterial pre-peptidase C-terminal domain VAA_01306 PF01447 Thermolysin metallopeptidase, catalytic domain VAA_01306 PF03413 Peptidase propeptide and YPEB domain VAA_01306 PF07504 Fungalysin/Thermolysin Propeptide Motif VAA_01309 PF03922 OmpW family VAA_01311 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VAA_01311 PF18416 N-acetylglucosamine binding protein domain 2 VAA_01312 PF07690 Major Facilitator Superfamily VAA_01313 PF03009 Glycerophosphoryl diester phosphodiesterase family VAA_01314 PF03466 LysR substrate binding domain VAA_01314 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01315 PF03306 Alpha-acetolactate decarboxylase VAA_01316 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_01316 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_01316 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_01320 PF03466 LysR substrate binding domain VAA_01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01321 PF02652 L-lactate permease VAA_01322 PF01070 FMN-dependent dehydrogenase VAA_01325 PF01161 Phosphatidylethanolamine-binding protein VAA_01327 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VAA_01330 PF03372 Endonuclease/Exonuclease/phosphatase family VAA_01333 PF08447 PAS fold VAA_01333 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01334 PF14319 Transposase zinc-binding domain VAA_01334 PF04986 Putative transposase VAA_01335 PF00672 HAMP domain VAA_01335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01335 PF02743 Cache domain VAA_01336 PF00356 Bacterial regulatory proteins, lacI family VAA_01337 PF14310 Fibronectin type III-like domain VAA_01337 PF00933 Glycosyl hydrolase family 3 N terminal domain VAA_01337 PF01915 Glycosyl hydrolase family 3 C-terminal domain VAA_01338 PF00005 ABC transporter VAA_01338 PF17912 MalK OB fold domain VAA_01339 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01340 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01342 PF00356 Bacterial regulatory proteins, lacI family VAA_01343 PF02264 LamB porin VAA_01345 PF01554 MatE VAA_01348 PF07690 Major Facilitator Superfamily VAA_01349 PF00672 HAMP domain VAA_01349 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01350 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA_01350 PF13654 AAA domain VAA_01352 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VAA_01352 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VAA_01353 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VAA_01354 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VAA_01354 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VAA_01356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01356 PF03466 LysR substrate binding domain VAA_01361 PF01042 Endoribonuclease L-PSP VAA_01363 PF02322 Cytochrome bd terminal oxidase subunit II VAA_01364 PF01654 Cytochrome bd terminal oxidase subunit I VAA_01367 PF05114 Protein of unknown function (DUF692) VAA_01373 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01373 PF16591 Helical bimodular sensor domain VAA_01373 PF00672 HAMP domain VAA_01374 PF07885 Ion channel VAA_01375 PF12792 CSS motif domain associated with EAL VAA_01375 PF00563 EAL domain VAA_01376 PF00294 pfkB family carbohydrate kinase VAA_01377 PF02378 Phosphotransferase system, EIIC VAA_01377 PF00367 phosphotransferase system, EIIB VAA_01378 PF00356 Bacterial regulatory proteins, lacI family VAA_01379 PF00251 Glycosyl hydrolases family 32 N-terminal domain VAA_01379 PF08244 Glycosyl hydrolases family 32 C terminal VAA_01380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01380 PF00672 HAMP domain VAA_01380 PF02743 Cache domain VAA_01383 PF00005 ABC transporter VAA_01384 PF01032 FecCD transport family VAA_01387 PF02472 Biopolymer transport protein ExbD/TolR VAA_01388 PF01618 MotA/TolQ/ExbB proton channel family VAA_01389 PF03544 Gram-negative bacterial TonB protein C-terminal VAA_01390 PF06228 Haem utilisation ChuX/HutX VAA_01391 PF01243 Pyridoxamine 5'-phosphate oxidase VAA_01392 PF04886 PT repeat VAA_01392 PF07715 TonB-dependent Receptor Plug Domain VAA_01392 PF00593 TonB dependent receptor VAA_01393 PF00480 ROK family VAA_01394 PF00925 GTP cyclohydrolase II VAA_01399 PF01471 Putative peptidoglycan binding domain VAA_01399 PF03734 L,D-transpeptidase catalytic domain VAA_01400 PF05951 Bacterial protein of unknown function (DUF882) VAA_01401 PF00753 Metallo-beta-lactamase superfamily VAA_01404 PF01047 MarR family VAA_01405 PF02028 BCCT, betaine/carnitine/choline family transporter VAA_01406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01406 PF00672 HAMP domain VAA_01406 PF02743 Cache domain VAA_01407 PF00929 Exonuclease VAA_01407 PF02811 PHP domain VAA_01407 PF14579 Helix-hairpin-helix motif VAA_01407 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VAA_01407 PF14480 DNA polymerase III polC-type N-terminus I VAA_01407 PF11490 DNA polymerase III polC-type N-terminus II VAA_01407 PF07733 Bacterial DNA polymerase III alpha NTPase domain VAA_01408 PF00571 CBS domain VAA_01409 PF00155 Aminotransferase class I and II VAA_01410 PF00672 HAMP domain VAA_01410 PF01966 HD domain VAA_01411 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01411 PF00672 HAMP domain VAA_01411 PF12729 Four helix bundle sensory module for signal transduction VAA_01412 PF00072 Response regulator receiver domain VAA_01414 PF01584 CheW-like domain VAA_01414 PF02895 Signal transducing histidine kinase, homodimeric domain VAA_01414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01414 PF01627 Hpt domain VAA_01414 PF09078 CheY binding VAA_01415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01415 PF00672 HAMP domain VAA_01415 PF12729 Four helix bundle sensory module for signal transduction VAA_01416 PF01584 CheW-like domain VAA_01417 PF03705 CheR methyltransferase, all-alpha domain VAA_01417 PF01739 CheR methyltransferase, SAM binding domain VAA_01418 PF03975 CheD chemotactic sensory transduction VAA_01419 PF00072 Response regulator receiver domain VAA_01419 PF01339 CheB methylesterase VAA_01421 PF01336 OB-fold nucleic acid binding domain VAA_01421 PF00152 tRNA synthetases class II (D, K and N) VAA_01422 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01422 PF17200 Single Cache domain 2 VAA_01422 PF00672 HAMP domain VAA_01423 PF01242 6-pyruvoyl tetrahydropterin synthase VAA_01424 PF04231 Endonuclease I VAA_01425 PF00041 Fibronectin type III domain VAA_01425 PF12561 ToxR activated gene A lipoprotein domain VAA_01426 PF03315 Serine dehydratase beta chain VAA_01426 PF03313 Serine dehydratase alpha chain VAA_01427 PF03222 Tryptophan/tyrosine permease family VAA_01428 PF00293 NUDIX domain VAA_01429 PF04715 Anthranilate synthase component I, N terminal region VAA_01429 PF00425 chorismate binding enzyme VAA_01432 PF04317 YcjX-like family, DUF463 VAA_01433 PF05128 Domain of unknown function (DUF697) VAA_01434 PF00158 Sigma-54 interaction domain VAA_01434 PF18024 Helix-turn-helix domain VAA_01435 PF13302 Acetyltransferase (GNAT) domain VAA_01437 PF00990 Diguanylate cyclase, GGDEF domain VAA_01438 PF00892 EamA-like transporter family VAA_01439 PF00842 Alanine racemase, C-terminal domain VAA_01439 PF01168 Alanine racemase, N-terminal domain VAA_01441 PF00939 Sodium:sulfate symporter transmembrane region VAA_01442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01442 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01442 PF00512 His Kinase A (phospho-acceptor) domain VAA_01443 PF02954 Bacterial regulatory protein, Fis family VAA_01443 PF00158 Sigma-54 interaction domain VAA_01443 PF00072 Response regulator receiver domain VAA_01445 PF00313 'Cold-shock' DNA-binding domain VAA_01446 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA_01447 PF18364 Molybdopterin oxidoreductase N-terminal domain VAA_01447 PF00384 Molybdopterin oxidoreductase VAA_01447 PF01568 Molydopterin dinucleotide binding domain VAA_01450 PF00271 Helicase conserved C-terminal domain VAA_01450 PF00270 DEAD/DEAH box helicase VAA_01451 PF00232 Glycosyl hydrolase family 1 VAA_01452 PF00356 Bacterial regulatory proteins, lacI family VAA_01457 PF00465 Iron-containing alcohol dehydrogenase VAA_01458 PF00012 Hsp70 protein VAA_01459 PF00012 Hsp70 protein VAA_01461 PF00563 EAL domain VAA_01461 PF00990 Diguanylate cyclase, GGDEF domain VAA_01461 PF08448 PAS fold VAA_01465 PF00271 Helicase conserved C-terminal domain VAA_01465 PF04408 Helicase associated domain (HA2) VAA_01465 PF11898 Domain of unknown function (DUF3418) VAA_01465 PF00270 DEAD/DEAH box helicase VAA_01465 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VAA_01467 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01467 PF03466 LysR substrate binding domain VAA_01468 PF07690 Major Facilitator Superfamily VAA_01471 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA_01471 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VAA_01472 PF00474 Sodium:solute symporter family VAA_01473 PF01380 SIS domain VAA_01473 PF00571 CBS domain VAA_01474 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VAA_01474 PF02811 PHP domain VAA_01474 PF00929 Exonuclease VAA_01474 PF07733 Bacterial DNA polymerase III alpha NTPase domain VAA_01474 PF14579 Helix-hairpin-helix motif VAA_01477 PF04962 KduI/IolB family VAA_01478 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_01478 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_01478 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_01479 PF00294 pfkB family carbohydrate kinase VAA_01480 PF01261 Xylose isomerase-like TIM barrel VAA_01487 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA_01487 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VAA_01494 PF11849 Domain of unknown function (DUF3369) VAA_01495 PF13419 Haloacid dehalogenase-like hydrolase VAA_01497 PF00684 DnaJ central domain VAA_01497 PF01556 DnaJ C terminal domain VAA_01497 PF00226 DnaJ domain VAA_01499 PF00563 EAL domain VAA_01499 PF00498 FHA domain VAA_01499 PF00990 Diguanylate cyclase, GGDEF domain VAA_01501 PF12241 Trans-2-enoyl-CoA reductase catalytic region VAA_01501 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VAA_01501 PF07055 Enoyl reductase FAD binding domain VAA_01502 PF13472 GDSL-like Lipase/Acylhydrolase family VAA_01503 PF00005 ABC transporter VAA_01506 PF02626 Carboxyltransferase domain, subdomain A and B VAA_01508 PF03746 LamB/YcsF family VAA_01509 PF16363 GDP-mannose 4,6 dehydratase VAA_01510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01510 PF00672 HAMP domain VAA_01511 PF03222 Tryptophan/tyrosine permease family VAA_01512 PF00270 DEAD/DEAH box helicase VAA_01512 PF00271 Helicase conserved C-terminal domain VAA_01514 PF01212 Beta-eliminating lyase VAA_01516 PF07728 AAA domain (dynein-related subfamily) VAA_01516 PF17868 AAA lid domain VAA_01516 PF12592 Protein of unknown function (DUF3763) VAA_01517 PF05762 VWA domain containing CoxE-like protein VAA_01518 PF00571 CBS domain VAA_01518 PF00005 ABC transporter VAA_01519 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01520 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VAA_01521 PF05199 GMC oxidoreductase VAA_01521 PF00732 GMC oxidoreductase VAA_01522 PF00171 Aldehyde dehydrogenase family VAA_01523 PF13977 BetI-type transcriptional repressor, C-terminal VAA_01523 PF00440 Bacterial regulatory proteins, tetR family VAA_01525 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_01525 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VAA_01525 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VAA_01525 PF04324 BFD-like [2Fe-2S] binding domain VAA_01525 PF18267 Rubredoxin NAD+ reductase C-terminal domain VAA_01526 PF13806 Rieske-like [2Fe-2S] domain VAA_01528 PF10414 Sirohaem synthase dimerisation region VAA_01528 PF14824 Sirohaem biosynthesis protein central VAA_01528 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA_01529 PF01513 ATP-NAD kinase VAA_01531 PF11756 Nitrous oxide-stimulated promoter VAA_01532 PF07690 Major Facilitator Superfamily VAA_01533 PF00085 Thioredoxin VAA_01534 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VAA_01534 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VAA_01535 PF13183 4Fe-4S dicluster domain VAA_01535 PF02754 Cysteine-rich domain VAA_01536 PF00890 FAD binding domain VAA_01537 PF01266 FAD dependent oxidoreductase VAA_01537 PF04324 BFD-like [2Fe-2S] binding domain VAA_01538 PF00230 Major intrinsic protein VAA_01539 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VAA_01539 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VAA_01541 PF04363 Protein of unknown function (DUF496) VAA_01544 PF01541 GIY-YIG catalytic domain VAA_01546 PF13407 Periplasmic binding protein domain VAA_01548 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01548 PF09308 LuxQ, periplasmic VAA_01548 PF00072 Response regulator receiver domain VAA_01548 PF00512 His Kinase A (phospho-acceptor) domain VAA_01551 PF01266 FAD dependent oxidoreductase VAA_01551 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VAA_01555 PF12805 FUSC-like inner membrane protein yccS VAA_01556 PF12462 DNA helicase IV / RNA helicase N terminal VAA_01556 PF00580 UvrD/REP helicase N-terminal domain VAA_01556 PF13361 UvrD-like helicase C-terminal domain VAA_01557 PF02142 MGS-like domain VAA_01558 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA_01560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01560 PF00512 His Kinase A (phospho-acceptor) domain VAA_01560 PF00672 HAMP domain VAA_01560 PF01627 Hpt domain VAA_01560 PF00072 Response regulator receiver domain VAA_01561 PF02887 Pyruvate kinase, alpha/beta domain VAA_01561 PF00224 Pyruvate kinase, barrel domain VAA_01562 PF07690 Major Facilitator Superfamily VAA_01565 PF00672 HAMP domain VAA_01565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01565 PF00512 His Kinase A (phospho-acceptor) domain VAA_01566 PF00072 Response regulator receiver domain VAA_01566 PF02954 Bacterial regulatory protein, Fis family VAA_01566 PF14532 Sigma-54 interaction domain VAA_01567 PF00465 Iron-containing alcohol dehydrogenase VAA_01568 PF12833 Helix-turn-helix domain VAA_01568 PF06719 AraC-type transcriptional regulator N-terminus VAA_01569 PF06483 Chitinase C VAA_01569 PF00704 Glycosyl hydrolases family 18 VAA_01570 PF00483 Nucleotidyl transferase VAA_01571 PF13426 PAS domain VAA_01571 PF08448 PAS fold VAA_01571 PF00563 EAL domain VAA_01571 PF08447 PAS fold VAA_01571 PF00990 Diguanylate cyclase, GGDEF domain VAA_01571 PF05231 MASE1 VAA_01573 PF04076 Bacterial OB fold (BOF) protein VAA_01574 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VAA_01574 PF07685 CobB/CobQ-like glutamine amidotransferase domain VAA_01576 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01577 PF03459 TOBE domain VAA_01577 PF00005 ABC transporter VAA_01579 PF00360 Phytochrome region VAA_01579 PF00563 EAL domain VAA_01579 PF01590 GAF domain VAA_01579 PF00990 Diguanylate cyclase, GGDEF domain VAA_01582 PF00072 Response regulator receiver domain VAA_01584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01584 PF00512 His Kinase A (phospho-acceptor) domain VAA_01584 PF00989 PAS fold VAA_01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01585 PF00512 His Kinase A (phospho-acceptor) domain VAA_01586 PF00563 EAL domain VAA_01586 PF00990 Diguanylate cyclase, GGDEF domain VAA_01586 PF03707 Bacterial signalling protein N terminal repeat VAA_01586 PF13188 PAS domain VAA_01587 PF00158 Sigma-54 interaction domain VAA_01587 PF02954 Bacterial regulatory protein, Fis family VAA_01587 PF00072 Response regulator receiver domain VAA_01589 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA_01589 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_01592 PF04143 Sulphur transport VAA_01594 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA_01594 PF00529 HlyD membrane-fusion protein of T1SS VAA_01595 PF00873 AcrB/AcrD/AcrF family VAA_01596 PF07694 5TMR of 5TMR-LYT VAA_01596 PF00990 Diguanylate cyclase, GGDEF domain VAA_01597 PF13597 Anaerobic ribonucleoside-triphosphate reductase VAA_01597 PF03477 ATP cone domain VAA_01599 PF00155 Aminotransferase class I and II VAA_01601 PF18030 RimK PreATP-grasp domain VAA_01601 PF08443 RimK-like ATP-grasp domain VAA_01603 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_01604 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01605 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA_01605 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01606 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_01606 PF00005 ABC transporter VAA_01607 PF00360 Phytochrome region VAA_01607 PF00990 Diguanylate cyclase, GGDEF domain VAA_01607 PF01590 GAF domain VAA_01607 PF00563 EAL domain VAA_01610 PF01292 Prokaryotic cytochrome b561 VAA_01611 PF04264 YceI-like domain VAA_01612 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01612 PF00672 HAMP domain VAA_01612 PF12729 Four helix bundle sensory module for signal transduction VAA_01613 PF13419 Haloacid dehalogenase-like hydrolase VAA_01614 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA_01614 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_01618 PF02780 Transketolase, C-terminal domain VAA_01618 PF00456 Transketolase, thiamine diphosphate binding domain VAA_01618 PF02779 Transketolase, pyrimidine binding domain VAA_01620 PF00923 Transaldolase/Fructose-6-phosphate aldolase VAA_01623 PF00704 Glycosyl hydrolases family 18 VAA_01623 PF08329 Chitinase A, N-terminal domain VAA_01624 PF00581 Rhodanese-like domain VAA_01625 PF00899 ThiF family VAA_01626 PF03454 MoeA C-terminal region (domain IV) VAA_01626 PF00994 Probable molybdopterin binding domain VAA_01626 PF03453 MoeA N-terminal region (domain I and II) VAA_01627 PF01227 GTP cyclohydrolase I VAA_01628 PF01641 SelR domain VAA_01628 PF01625 Peptide methionine sulfoxide reductase VAA_01629 PF01268 Formate--tetrahydrofolate ligase VAA_01631 PF00588 SpoU rRNA Methylase family VAA_01631 PF08032 RNA 2'-O ribose methyltransferase substrate binding VAA_01632 PF11953 Domain of unknown function (DUF3470) VAA_01632 PF00037 4Fe-4S binding domain VAA_01634 PF13419 Haloacid dehalogenase-like hydrolase VAA_01635 PF14760 Rnk N-terminus VAA_01635 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA_01636 PF00392 Bacterial regulatory proteins, gntR family VAA_01636 PF07702 UTRA domain VAA_01638 PF00854 POT family VAA_01640 PF01226 Formate/nitrite transporter VAA_01641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01641 PF03466 LysR substrate binding domain VAA_01642 PF06496 Protein of unknown function (DUF1097) VAA_01643 PF11398 Protein of unknown function (DUF2813) VAA_01644 PF02872 5'-nucleotidase, C-terminal domain VAA_01644 PF00149 Calcineurin-like phosphoesterase VAA_01646 PF03741 Integral membrane protein TerC family VAA_01648 PF02772 S-adenosylmethionine synthetase, central domain VAA_01648 PF00438 S-adenosylmethionine synthetase, N-terminal domain VAA_01648 PF02773 S-adenosylmethionine synthetase, C-terminal domain VAA_01649 PF17283 SprT-like zinc ribbon domain VAA_01649 PF10263 SprT-like family VAA_01650 PF04231 Endonuclease I VAA_01651 PF04452 RNA methyltransferase VAA_01652 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VAA_01652 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VAA_01653 PF02622 Uncharacterized ACR, COG1678 VAA_01654 PF03652 Holliday junction resolvase VAA_01655 PF00437 Type II/IV secretion system protein VAA_01656 PF00437 Type II/IV secretion system protein VAA_01657 PF01168 Alanine racemase, N-terminal domain VAA_01658 PF14748 Pyrroline-5-carboxylate reductase dimerisation VAA_01658 PF03807 NADP oxidoreductase coenzyme F420-dependent VAA_01659 PF02325 YGGT family VAA_01660 PF02594 Uncharacterised ACR, YggU family COG1872 VAA_01662 PF01725 Ham1 family VAA_01663 PF06969 HemN C-terminal domain VAA_01663 PF04055 Radical SAM superfamily VAA_01664 PF04960 Glutaminase VAA_01665 PF02390 Putative methyltransferase VAA_01666 PF14815 NUDIX domain VAA_01666 PF00730 HhH-GPD superfamily base excision DNA repair protein VAA_01666 PF00633 Helix-hairpin-helix motif VAA_01667 PF04362 Bacterial Fe(2+) trafficking VAA_01668 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VAA_01668 PF01464 Transglycosylase SLT domain VAA_01669 PF00226 DnaJ domain VAA_01669 PF05099 Tellurite resistance protein TerB VAA_01670 PF03968 OstA-like protein VAA_01670 PF04453 LPS transport system D VAA_01672 PF09312 SurA N-terminal domain VAA_01673 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VAA_01674 PF00398 Ribosomal RNA adenine dimethylase VAA_01675 PF04379 ApaG domain VAA_01676 PF00149 Calcineurin-like phosphoesterase VAA_01677 PF00186 Dihydrofolate reductase VAA_01678 PF12821 Threonine/Serine exporter, ThrE VAA_01679 PF06738 Putative threonine/serine exporter VAA_01680 PF01018 GTP1/OBG VAA_01680 PF01926 50S ribosome-binding GTPase VAA_01681 PF01016 Ribosomal L27 protein VAA_01683 PF00348 Polyprenyl synthetase VAA_01684 PF13520 Amino acid permease VAA_01685 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VAA_01685 PF00056 lactate/malate dehydrogenase, NAD binding domain VAA_01688 PF16868 NMT1-like family VAA_01690 PF00582 Universal stress protein family VAA_01696 PF07804 HipA-like C-terminal domain VAA_01696 PF13657 HipA N-terminal domain VAA_01699 PF02384 N-6 DNA Methylase VAA_01701 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VAA_01701 PF11867 Domain of unknown function (DUF3387) VAA_01701 PF18766 SWI2/SNF2 ATPase VAA_01703 PF04245 37-kD nucleoid-associated bacterial protein VAA_01709 PF06877 Regulator of ribonuclease activity B VAA_01712 PF01523 Putative modulator of DNA gyrase VAA_01713 PF00795 Carbon-nitrogen hydrolase VAA_01714 PF13116 Protein of unknown function VAA_01714 PF13502 AsmA-like C-terminal region VAA_01715 PF10150 Ribonuclease E/G family VAA_01715 PF00575 S1 RNA binding domain VAA_01717 PF02545 Maf-like protein VAA_01718 PF04093 rod shape-determining protein MreD VAA_01719 PF04085 rod shape-determining protein MreC VAA_01727 PF00114 Pilin (bacterial filament) VAA_01727 PF07963 Prokaryotic N-terminal methylation motif VAA_01729 PF00482 Type II secretion system (T2SS), protein F VAA_01730 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VAA_01730 PF00437 Type II/IV secretion system protein VAA_01732 PF13401 AAA domain VAA_01732 PF01471 Putative peptidoglycan binding domain VAA_01733 PF03958 Bacterial type II/III secretion system short domain VAA_01733 PF00263 Bacterial type II and III secretion system protein VAA_01738 PF17157 Gammaproteobacterial periplasmic sensor domain VAA_01738 PF00563 EAL domain VAA_01738 PF00990 Diguanylate cyclase, GGDEF domain VAA_01739 PF00436 Single-strand binding protein family VAA_01740 PF00196 Bacterial regulatory proteins, luxR family VAA_01741 PF00483 Nucleotidyl transferase VAA_01742 PF17760 UvrA interaction domain VAA_01742 PF00005 ABC transporter VAA_01742 PF17755 UvrA DNA-binding domain VAA_01744 PF00571 CBS domain VAA_01744 PF03448 MgtE intracellular N domain VAA_01744 PF01769 Divalent cation transporter VAA_01746 PF00266 Aminotransferase class-V VAA_01747 PF00696 Amino acid kinase family VAA_01747 PF01842 ACT domain VAA_01748 PF02965 Vitamin B12 dependent methionine synthase, activation domain VAA_01748 PF02310 B12 binding domain VAA_01748 PF02574 Homocysteine S-methyltransferase VAA_01748 PF00809 Pterin binding enzyme VAA_01748 PF02607 B12 binding domain VAA_01749 PF00999 Sodium/hydrogen exchanger family VAA_01756 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_01757 PF07369 Protein of unknown function (DUF1488) VAA_01758 PF01488 Shikimate / quinate 5-dehydrogenase VAA_01758 PF08501 Shikimate dehydrogenase substrate binding domain VAA_01758 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VAA_01759 PF01218 Coproporphyrinogen III oxidase VAA_01760 PF01300 Telomere recombination VAA_01761 PF00731 AIR carboxylase VAA_01762 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VAA_01762 PF02222 ATP-grasp domain VAA_01764 PF01396 Topoisomerase DNA binding C4 zinc finger VAA_01765 PF04361 Protein of unknown function (DUF494) VAA_01766 PF17782 DprA winged helix domain VAA_01766 PF02481 DNA recombination-mediator protein A VAA_01767 PF02481 DNA recombination-mediator protein A VAA_01767 PF17782 DprA winged helix domain VAA_01768 PF01476 LysM domain VAA_01769 PF01327 Polypeptide deformylase VAA_01770 PF00551 Formyl transferase VAA_01770 PF02911 Formyl transferase, C-terminal domain VAA_01771 PF01029 NusB family VAA_01771 PF01189 16S rRNA methyltransferase RsmB/F VAA_01772 PF02080 TrkA-C domain VAA_01772 PF02254 TrkA-N domain VAA_01773 PF02386 Cation transport protein VAA_01775 PF03006 Haemolysin-III related VAA_01778 PF06288 Protein of unknown function (DUF1040) VAA_01779 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VAA_01779 PF13746 4Fe-4S dicluster domain VAA_01779 PF12801 4Fe-4S binding domain VAA_01780 PF01636 Phosphotransferase enzyme family VAA_01781 PF01323 DSBA-like thioredoxin domain VAA_01785 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VAA_01786 PF01810 LysE type translocator VAA_01787 PF01235 Sodium:alanine symporter family VAA_01790 PF01546 Peptidase family M20/M25/M40 VAA_01790 PF07687 Peptidase dimerisation domain VAA_01791 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA_01792 PF04209 homogentisate 1,2-dioxygenase VAA_01794 PF14497 Glutathione S-transferase, C-terminal domain VAA_01794 PF02798 Glutathione S-transferase, N-terminal domain VAA_01795 PF04151 Bacterial pre-peptidase C-terminal domain VAA_01795 PF04389 Peptidase family M28 VAA_01800 PF01618 MotA/TolQ/ExbB proton channel family VAA_01801 PF01618 MotA/TolQ/ExbB proton channel family VAA_01802 PF02472 Biopolymer transport protein ExbD/TolR VAA_01805 PF01734 Patatin-like phospholipase VAA_01807 PF01554 MatE VAA_01811 PF00877 NlpC/P60 family VAA_01812 PF12729 Four helix bundle sensory module for signal transduction VAA_01812 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01812 PF00672 HAMP domain VAA_01815 PF00480 ROK family VAA_01817 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VAA_01818 PF12804 MobA-like NTP transferase domain VAA_01820 PF00005 ABC transporter VAA_01820 PF08402 TOBE domain VAA_01822 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01824 PF07690 Major Facilitator Superfamily VAA_01825 PF07730 Histidine kinase VAA_01825 PF05231 MASE1 VAA_01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01826 PF00196 Bacterial regulatory proteins, luxR family VAA_01826 PF00072 Response regulator receiver domain VAA_01828 PF00005 ABC transporter VAA_01828 PF12848 ABC transporter VAA_01829 PF00909 Ammonium Transporter Family VAA_01830 PF02146 Sir2 family VAA_01831 PF13416 Bacterial extracellular solute-binding protein VAA_01832 PF13416 Bacterial extracellular solute-binding protein VAA_01833 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01834 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01835 PF08402 TOBE domain VAA_01835 PF00005 ABC transporter VAA_01839 PF01171 PP-loop family VAA_01840 PF00582 Universal stress protein family VAA_01841 PF13545 Crp-like helix-turn-helix domain VAA_01841 PF00027 Cyclic nucleotide-binding domain VAA_01845 PF00403 Heavy-metal-associated domain VAA_01847 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VAA_01847 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VAA_01850 PF00115 Cytochrome C and Quinol oxidase polypeptide I VAA_01855 PF17414 MatP C-terminal ribbon-helix-helix domain VAA_01855 PF06303 MatP N-terminal domain VAA_01857 PF07977 FabA-like domain VAA_01862 PF10672 S-adenosylmethionine-dependent methyltransferase VAA_01862 PF01170 Putative RNA methylase family UPF0020 VAA_01862 PF02926 THUMP domain VAA_01863 PF07126 Cell-division protein ZapC VAA_01864 PF01180 Dihydroorotate dehydrogenase VAA_01865 PF05088 Bacterial NAD-glutamate dehydrogenase VAA_01868 PF11940 Domain of unknown function (DUF3458) Ig-like fold VAA_01868 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VAA_01868 PF01433 Peptidase family M1 domain VAA_01871 PF11818 C-terminal domain of tail specific protease (DUF3340) VAA_01871 PF00595 PDZ domain VAA_01871 PF03572 Peptidase family S41 VAA_01871 PF17804 Tail specific protease N-terminal domain VAA_01873 PF13185 GAF domain VAA_01874 PF00664 ABC transporter transmembrane region VAA_01874 PF00005 ABC transporter VAA_01875 PF04403 Paraquat-inducible protein A VAA_01876 PF02470 MlaD protein VAA_01877 PF02470 MlaD protein VAA_01878 PF01189 16S rRNA methyltransferase RsmB/F VAA_01878 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VAA_01878 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VAA_01879 PF13509 S1 domain VAA_01879 PF17783 CvfB-like winged helix domain VAA_01882 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VAA_01882 PF00391 PEP-utilising enzyme, mobile domain VAA_01882 PF02896 PEP-utilising enzyme, TIM barrel domain VAA_01883 PF00793 DAHP synthetase I family VAA_01884 PF04461 Protein of unknown function (DUF520) VAA_01887 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA_01887 PF14824 Sirohaem biosynthesis protein central VAA_01887 PF10414 Sirohaem synthase dimerisation region VAA_01888 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01889 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01890 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01891 PF00005 ABC transporter VAA_01892 PF01027 Inhibitor of apoptosis-promoting Bax1 VAA_01893 PF04358 DsrC like protein VAA_01894 PF00708 Acylphosphatase VAA_01895 PF10672 S-adenosylmethionine-dependent methyltransferase VAA_01895 PF17785 PUA-like domain VAA_01896 PF14319 Transposase zinc-binding domain VAA_01896 PF04986 Putative transposase VAA_01898 PF13416 Bacterial extracellular solute-binding protein VAA_01899 PF13718 GNAT acetyltransferase 2 VAA_01899 PF05127 Helicase VAA_01901 PF00072 Response regulator receiver domain VAA_01901 PF00486 Transcriptional regulatory protein, C terminal VAA_01902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01902 PF02895 Signal transducing histidine kinase, homodimeric domain VAA_01902 PF01627 Hpt domain VAA_01902 PF01584 CheW-like domain VAA_01902 PF09078 CheY binding VAA_01903 PF01584 CheW-like domain VAA_01904 PF01584 CheW-like domain VAA_01905 PF02203 Tar ligand binding domain homologue VAA_01905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01905 PF00672 HAMP domain VAA_01906 PF01739 CheR methyltransferase, SAM binding domain VAA_01906 PF03705 CheR methyltransferase, all-alpha domain VAA_01907 PF03975 CheD chemotactic sensory transduction VAA_01908 PF00072 Response regulator receiver domain VAA_01908 PF01339 CheB methylesterase VAA_01909 PF00672 HAMP domain VAA_01909 PF02743 Cache domain VAA_01909 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01912 PF00072 Response regulator receiver domain VAA_01912 PF00990 Diguanylate cyclase, GGDEF domain VAA_01914 PF00005 ABC transporter VAA_01914 PF03412 Peptidase C39 family VAA_01914 PF00664 ABC transporter transmembrane region VAA_01917 PF00529 HlyD membrane-fusion protein of T1SS VAA_01918 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VAA_01918 PF01243 Pyridoxamine 5'-phosphate oxidase VAA_01920 PF03781 Sulfatase-modifying factor enzyme 1 VAA_01922 PF12833 Helix-turn-helix domain VAA_01923 PF14850 DNA-binding domain of Proline dehydrogenase VAA_01923 PF00171 Aldehyde dehydrogenase family VAA_01923 PF01619 Proline dehydrogenase VAA_01923 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VAA_01925 PF00474 Sodium:solute symporter family VAA_01927 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01927 PF00672 HAMP domain VAA_01927 PF17200 Single Cache domain 2 VAA_01928 PF01037 Lrp/AsnC ligand binding domain VAA_01929 PF00171 Aldehyde dehydrogenase family VAA_01933 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VAA_01934 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01934 PF00672 HAMP domain VAA_01934 PF02743 Cache domain VAA_01936 PF00672 HAMP domain VAA_01936 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01936 PF17200 Single Cache domain 2 VAA_01937 PF10928 Protein of unknown function (DUF2810) VAA_01938 PF00196 Bacterial regulatory proteins, luxR family VAA_01938 PF17874 MalT-like TPR region VAA_01939 PF00343 Carbohydrate phosphorylase VAA_01940 PF02446 4-alpha-glucanotransferase VAA_01941 PF00128 Alpha amylase, catalytic domain VAA_01941 PF02806 Alpha amylase, C-terminal all-beta domain VAA_01941 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA_01943 PF05638 Type VI secretion system effector, Hcp VAA_01944 PF16671 Actin cross-linking domain VAA_01944 PF04717 Type VI secretion system, phage-baseplate injector VAA_01948 PF07219 HemY protein N-terminus VAA_01949 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VAA_01950 PF02602 Uroporphyrinogen-III synthase HemD VAA_01951 PF03900 Porphobilinogen deaminase, C-terminal domain VAA_01951 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VAA_01952 PF12633 Adenylate cyclase NT domain VAA_01952 PF01295 Adenylate cyclase, class-I VAA_01953 PF01491 Frataxin-like domain VAA_01955 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VAA_01955 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VAA_01956 PF01678 Diaminopimelate epimerase VAA_01958 PF02899 Phage integrase, N-terminal SAM-like domain VAA_01958 PF00589 Phage integrase family VAA_01959 PF13419 Haloacid dehalogenase-like hydrolase VAA_01963 PF12146 Serine aminopeptidase, S33 VAA_01964 PF01810 LysE type translocator VAA_01965 PF08668 HDOD domain VAA_01965 PF00563 EAL domain VAA_01966 PF00210 Ferritin-like domain VAA_01973 PF01914 MarC family integral membrane protein VAA_01974 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01974 PF00672 HAMP domain VAA_01974 PF12729 Four helix bundle sensory module for signal transduction VAA_01975 PF03989 DNA gyrase C-terminal domain, beta-propeller VAA_01975 PF00521 DNA gyrase/topoisomerase IV, subunit A VAA_01977 PF03477 ATP cone domain VAA_01977 PF02867 Ribonucleotide reductase, barrel domain VAA_01977 PF00317 Ribonucleotide reductase, all-alpha domain VAA_01979 PF00268 Ribonucleotide reductase, small chain VAA_01980 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_01980 PF00970 Oxidoreductase FAD-binding domain VAA_01980 PF00175 Oxidoreductase NAD-binding domain VAA_01982 PF00994 Probable molybdopterin binding domain VAA_01987 PF00672 HAMP domain VAA_01987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01989 PF16653 Saccharopine dehydrogenase C-terminal domain VAA_01989 PF03435 Saccharopine dehydrogenase NADP binding domain VAA_01990 PF00202 Aminotransferase class-III VAA_01991 PF06965 Na+/H+ antiporter 1 VAA_01994 PF00005 ABC transporter VAA_01995 PF01554 MatE VAA_01996 PF11066 Protein of unknown function (DUF2867) VAA_01996 PF13460 NAD(P)H-binding VAA_01998 PF07690 Major Facilitator Superfamily VAA_01999 PF00849 RNA pseudouridylate synthase VAA_01999 PF01479 S4 domain VAA_02000 PF04851 Type III restriction enzyme, res subunit VAA_02000 PF00271 Helicase conserved C-terminal domain VAA_02002 PF00486 Transcriptional regulatory protein, C terminal VAA_02002 PF00072 Response regulator receiver domain VAA_02003 PF00672 HAMP domain VAA_02003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02003 PF00512 His Kinase A (phospho-acceptor) domain VAA_02007 PF00270 DEAD/DEAH box helicase VAA_02007 PF00271 Helicase conserved C-terminal domain VAA_02010 PF13737 Transposase DDE domain VAA_02011 PF00672 HAMP domain VAA_02011 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02011 PF12729 Four helix bundle sensory module for signal transduction VAA_02015 PF01970 Tripartite tricarboxylate transporter TctA family VAA_02016 PF08218 Citrate lyase ligase C-terminal domain VAA_02017 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VAA_02020 PF02436 Conserved carboxylase domain VAA_02020 PF00682 HMGL-like VAA_02020 PF00364 Biotin-requiring enzyme VAA_02021 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VAA_02022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02022 PF17203 Single cache domain 3 VAA_02023 PF00072 Response regulator receiver domain VAA_02023 PF12431 Transcriptional regulator VAA_02025 PF06857 Malonate decarboxylase delta subunit (MdcD) VAA_02026 PF03328 HpcH/HpaI aldolase/citrate lyase family VAA_02027 PF04223 Citrate lyase, alpha subunit (CitF) VAA_02028 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VAA_02029 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VAA_02033 PF01238 Phosphomannose isomerase type I VAA_02034 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02034 PF02378 Phosphotransferase system, EIIC VAA_02034 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_02035 PF12833 Helix-turn-helix domain VAA_02037 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_02039 PF02001 Protein of unknown function DUF134 VAA_02042 PF13407 Periplasmic binding protein domain VAA_02043 PF00005 ABC transporter VAA_02044 PF02653 Branched-chain amino acid transport system / permease component VAA_02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02045 PF03466 LysR substrate binding domain VAA_02046 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VAA_02047 PF01219 Prokaryotic diacylglycerol kinase VAA_02048 PF00672 HAMP domain VAA_02048 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02048 PF00512 His Kinase A (phospho-acceptor) domain VAA_02049 PF00072 Response regulator receiver domain VAA_02049 PF00486 Transcriptional regulatory protein, C terminal VAA_02058 PF00285 Citrate synthase, C-terminal domain VAA_02060 PF00694 Aconitase C-terminal domain VAA_02060 PF00330 Aconitase family (aconitate hydratase) VAA_02061 PF04303 PrpF protein VAA_02062 PF16177 Acetyl-coenzyme A synthetase N-terminus VAA_02062 PF13193 AMP-binding enzyme C-terminal domain VAA_02062 PF00501 AMP-binding enzyme VAA_02066 PF04055 Radical SAM superfamily VAA_02067 PF06508 Queuosine biosynthesis protein QueC VAA_02072 PF17785 PUA-like domain VAA_02072 PF10672 S-adenosylmethionine-dependent methyltransferase VAA_02076 PF13193 AMP-binding enzyme C-terminal domain VAA_02076 PF00975 Thioesterase domain VAA_02076 PF00501 AMP-binding enzyme VAA_02076 PF00668 Condensation domain VAA_02076 PF00550 Phosphopantetheine attachment site VAA_02078 PF11806 Domain of unknown function (DUF3327) VAA_02078 PF00756 Putative esterase VAA_02079 PF07715 TonB-dependent Receptor Plug Domain VAA_02080 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VAA_02080 PF01648 4'-phosphopantetheinyl transferase superfamily VAA_02081 PF02508 Rnf-Nqr subunit, membrane protein VAA_02082 PF04060 Putative Fe-S cluster VAA_02083 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VAA_02083 PF12838 4Fe-4S dicluster domain VAA_02083 PF13375 RnfC Barrel sandwich hybrid domain VAA_02083 PF10531 SLBB domain VAA_02084 PF03116 NQR2, RnfD, RnfE family VAA_02087 PF10576 Iron-sulfur binding domain of endonuclease III VAA_02087 PF00730 HhH-GPD superfamily base excision DNA repair protein VAA_02087 PF00633 Helix-hairpin-helix motif VAA_02088 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA_02089 PF18393 MotY N-terminal domain VAA_02089 PF00691 OmpA family VAA_02090 PF00929 Exonuclease VAA_02091 PF03553 Na+/H+ antiporter family VAA_02091 PF13726 Na+-H+ antiporter family VAA_02092 PF00156 Phosphoribosyl transferase domain VAA_02093 PF02674 Colicin V production protein VAA_02094 PF05036 Sporulation related domain VAA_02095 PF02875 Mur ligase family, glutamate ligase domain VAA_02095 PF08245 Mur ligase middle domain VAA_02096 PF01039 Carboxyl transferase domain VAA_02096 PF17848 Acetyl-coA carboxylase zinc finger domain VAA_02099 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA_02099 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VAA_02100 PF02378 Phosphotransferase system, EIIC VAA_02100 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VAA_02100 PF00367 phosphotransferase system, EIIB VAA_02102 PF01979 Amidohydrolase family VAA_02103 PF00480 ROK family VAA_02103 PF01047 MarR family VAA_02104 PF02254 TrkA-N domain VAA_02104 PF00999 Sodium/hydrogen exchanger family VAA_02105 PF00733 Asparagine synthase VAA_02105 PF13537 Glutamine amidotransferase domain VAA_02106 PF02357 Transcription termination factor nusG VAA_02107 PF00854 POT family VAA_02108 PF00762 Ferrochelatase VAA_02109 PF05191 Adenylate kinase, active site lid VAA_02110 PF00183 Hsp90 protein VAA_02110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02111 PF00486 Transcriptional regulatory protein, C terminal VAA_02112 PF17323 Trans-membrane regulatory protein ToxS VAA_02114 PF12850 Calcineurin-like phosphoesterase superfamily domain VAA_02115 PF01370 NAD dependent epimerase/dehydratase family VAA_02115 PF08338 Domain of unknown function (DUF1731) VAA_02116 PF00085 Thioredoxin VAA_02118 PF16200 C-terminal region of band_7 VAA_02118 PF01145 SPFH domain / Band 7 family VAA_02120 PF13411 MerR HTH family regulatory protein VAA_02125 PF00849 RNA pseudouridylate synthase VAA_02126 PF00209 Sodium:neurotransmitter symporter family VAA_02127 PF13091 PLD-like domain VAA_02127 PF13396 Phospholipase_D-nuclease N-terminal VAA_02128 PF01053 Cys/Met metabolism PLP-dependent enzyme VAA_02129 PF00958 GMP synthase C terminal domain VAA_02129 PF13302 Acetyltransferase (GNAT) domain VAA_02129 PF13673 Acetyltransferase (GNAT) domain VAA_02129 PF00117 Glutamine amidotransferase class-I VAA_02129 PF03352 Methyladenine glycosylase VAA_02131 PF06667 Phage shock protein B VAA_02132 PF04012 PspA/IM30 family VAA_02133 PF02954 Bacterial regulatory protein, Fis family VAA_02133 PF00158 Sigma-54 interaction domain VAA_02134 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_02135 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02136 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02136 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA_02138 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_02138 PF00005 ABC transporter VAA_02139 PF00005 ABC transporter VAA_02142 PF01368 DHH family VAA_02142 PF02833 DHHA2 domain VAA_02145 PF18364 Molybdopterin oxidoreductase N-terminal domain VAA_02145 PF00384 Molybdopterin oxidoreductase VAA_02145 PF01568 Molydopterin dinucleotide binding domain VAA_02146 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA_02147 PF06796 Periplasmic nitrate reductase protein NapE VAA_02148 PF01226 Formate/nitrite transporter VAA_02151 PF03466 LysR substrate binding domain VAA_02151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02153 PF02698 DUF218 domain VAA_02154 PF00265 Thymidine kinase VAA_02155 PF00152 tRNA synthetases class II (D, K and N) VAA_02155 PF02938 GAD domain VAA_02155 PF01336 OB-fold nucleic acid binding domain VAA_02156 PF01904 Protein of unknown function DUF72 VAA_02157 PF05925 Enterobacterial virulence protein IpgD VAA_02159 PF13649 Methyltransferase domain VAA_02161 PF08443 RimK-like ATP-grasp domain VAA_02161 PF18030 RimK PreATP-grasp domain VAA_02164 PF16330 MukB hinge domain VAA_02164 PF04310 MukB N-terminal VAA_02165 PF04288 MukE-like family VAA_02166 PF03882 MukF winged-helix domain VAA_02166 PF17193 MukF C-terminal domain VAA_02166 PF17192 MukF middle domain VAA_02168 PF02698 DUF218 domain VAA_02169 PF00072 Response regulator receiver domain VAA_02169 PF00486 Transcriptional regulatory protein, C terminal VAA_02170 PF02613 Nitrate reductase delta subunit VAA_02171 PF00356 Bacterial regulatory proteins, lacI family VAA_02172 PF04994 TfoX C-terminal domain VAA_02172 PF04993 TfoX N-terminal domain VAA_02176 PF08323 Starch synthase catalytic domain VAA_02176 PF00534 Glycosyl transferases group 1 VAA_02177 PF00483 Nucleotidyl transferase VAA_02178 PF01396 Topoisomerase DNA binding C4 zinc finger VAA_02178 PF01131 DNA topoisomerase VAA_02178 PF08272 Topoisomerase I zinc-ribbon-like VAA_02178 PF01751 Toprim domain VAA_02181 PF10692 Protein of unknown function (DUF2498) VAA_02182 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VAA_02183 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VAA_02184 PF04377 Arginine-tRNA-protein transferase, C terminus VAA_02184 PF04376 Arginine-tRNA-protein transferase, N terminus VAA_02185 PF01176 Translation initiation factor 1A / IF-1 VAA_02186 PF02861 Clp amino terminal domain, pathogenicity island component VAA_02186 PF07724 AAA domain (Cdc48 subfamily) VAA_02186 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_02186 PF00004 ATPase family associated with various cellular activities (AAA) VAA_02186 PF17871 AAA lid domain VAA_02187 PF02617 ATP-dependent Clp protease adaptor protein ClpS VAA_02189 PF00313 'Cold-shock' DNA-binding domain VAA_02190 PF03971 Monomeric isocitrate dehydrogenase VAA_02191 PF00849 RNA pseudouridylate synthase VAA_02192 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VAA_02192 PF01502 Phosphoribosyl-AMP cyclohydrolase VAA_02193 PF00977 Histidine biosynthesis protein VAA_02194 PF00977 Histidine biosynthesis protein VAA_02195 PF00117 Glutamine amidotransferase class-I VAA_02196 PF00475 Imidazoleglycerol-phosphate dehydratase VAA_02196 PF08645 Polynucleotide kinase 3 phosphatase VAA_02198 PF00155 Aminotransferase class I and II VAA_02199 PF00815 Histidinol dehydrogenase VAA_02200 PF08029 HisG, C-terminal domain VAA_02200 PF01634 ATP phosphoribosyltransferase VAA_02202 PF03553 Na+/H+ antiporter family VAA_02203 PF00816 H-NS histone family VAA_02204 PF00294 pfkB family carbohydrate kinase VAA_02207 PF04356 Protein of unknown function (DUF489) VAA_02208 PF08328 Adenylosuccinate lyase C-terminal VAA_02208 PF00206 Lyase VAA_02209 PF00266 Aminotransferase class-V VAA_02211 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_02211 PF00512 His Kinase A (phospho-acceptor) domain VAA_02211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02214 PF04994 TfoX C-terminal domain VAA_02214 PF04993 TfoX N-terminal domain VAA_02216 PF03956 Lysine exporter LysO VAA_02218 PF00282 Pyridoxal-dependent decarboxylase conserved domain VAA_02219 PF01380 SIS domain VAA_02219 PF01418 Helix-turn-helix domain, rpiR family VAA_02220 PF00465 Iron-containing alcohol dehydrogenase VAA_02221 PF00462 Glutaredoxin VAA_02222 PF06826 Predicted Permease Membrane Region VAA_02222 PF02080 TrkA-C domain VAA_02224 PF01259 SAICAR synthetase VAA_02226 PF00390 Malic enzyme, N-terminal domain VAA_02226 PF03949 Malic enzyme, NAD binding domain VAA_02228 PF02698 DUF218 domain VAA_02229 PF00266 Aminotransferase class-V VAA_02231 PF00072 Response regulator receiver domain VAA_02231 PF00990 Diguanylate cyclase, GGDEF domain VAA_02232 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_02233 PF00664 ABC transporter transmembrane region VAA_02233 PF00005 ABC transporter VAA_02234 PF00005 ABC transporter VAA_02234 PF00664 ABC transporter transmembrane region VAA_02239 PF04542 Sigma-70 region 2 VAA_02239 PF08281 Sigma-70, region 4 VAA_02241 PF00563 EAL domain VAA_02241 PF03707 Bacterial signalling protein N terminal repeat VAA_02241 PF00990 Diguanylate cyclase, GGDEF domain VAA_02242 PF00849 RNA pseudouridylate synthase VAA_02242 PF01479 S4 domain VAA_02243 PF01300 Telomere recombination VAA_02244 PF02811 PHP domain VAA_02246 PF08056 Tryptophan operon leader peptide VAA_02247 PF04715 Anthranilate synthase component I, N terminal region VAA_02247 PF00425 chorismate binding enzyme VAA_02248 PF00117 Glutamine amidotransferase class-I VAA_02249 PF00591 Glycosyl transferase family, a/b domain VAA_02249 PF02885 Glycosyl transferase family, helical bundle domain VAA_02250 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VAA_02250 PF00218 Indole-3-glycerol phosphate synthase VAA_02251 PF00291 Pyridoxal-phosphate dependent enzyme VAA_02253 PF00375 Sodium:dicarboxylate symporter family VAA_02256 PF04279 Intracellular septation protein A VAA_02258 PF03061 Thioesterase superfamily VAA_02259 PF03795 YCII-related domain VAA_02261 PF01717 Cobalamin-independent synthase, Catalytic domain VAA_02261 PF08267 Cobalamin-independent synthase, N-terminal domain VAA_02262 PF03466 LysR substrate binding domain VAA_02262 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02265 PF00563 EAL domain VAA_02265 PF00990 Diguanylate cyclase, GGDEF domain VAA_02265 PF01590 GAF domain VAA_02265 PF00989 PAS fold VAA_02267 PF11842 Domain of unknown function (DUF3362) VAA_02267 PF04055 Radical SAM superfamily VAA_02267 PF08497 Radical SAM N-terminal VAA_02269 PF16036 Chalcone isomerase-like VAA_02274 PF00106 short chain dehydrogenase VAA_02276 PF01435 Peptidase family M48 VAA_02278 PF01580 FtsK/SpoIIIE family VAA_02278 PF09397 Ftsk gamma domain VAA_02278 PF17854 FtsK alpha domain VAA_02278 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VAA_02280 PF01037 Lrp/AsnC ligand binding domain VAA_02281 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VAA_02281 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VAA_02285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA_02286 PF18073 Rubredoxin metal binding domain VAA_02287 PF06305 Lipopolysaccharide assembly protein A domain VAA_02289 PF00575 S1 RNA binding domain VAA_02290 PF02224 Cytidylate kinase VAA_02293 PF13145 PPIC-type PPIASE domain VAA_02294 PF00216 Bacterial DNA-binding protein VAA_02295 PF00004 ATPase family associated with various cellular activities (AAA) VAA_02295 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA_02295 PF02190 ATP-dependent protease La (LON) substrate-binding domain VAA_02296 PF07724 AAA domain (Cdc48 subfamily) VAA_02296 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_02296 PF06689 ClpX C4-type zinc finger VAA_02297 PF00574 Clp protease VAA_02298 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_02298 PF05698 Bacterial trigger factor protein (TF) C-terminus VAA_02298 PF05697 Bacterial trigger factor protein (TF) VAA_02300 PF00512 His Kinase A (phospho-acceptor) domain VAA_02300 PF02743 Cache domain VAA_02300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02301 PF00072 Response regulator receiver domain VAA_02301 PF00158 Sigma-54 interaction domain VAA_02301 PF02954 Bacterial regulatory protein, Fis family VAA_02302 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VAA_02303 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VAA_02305 PF01547 Bacterial extracellular solute-binding protein VAA_02306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02306 PF00512 His Kinase A (phospho-acceptor) domain VAA_02306 PF00672 HAMP domain VAA_02307 PF00072 Response regulator receiver domain VAA_02307 PF00486 Transcriptional regulatory protein, C terminal VAA_02308 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VAA_02309 PF03315 Serine dehydratase beta chain VAA_02309 PF03313 Serine dehydratase alpha chain VAA_02311 PF00271 Helicase conserved C-terminal domain VAA_02311 PF00270 DEAD/DEAH box helicase VAA_02312 PF16657 Maltogenic Amylase, C-terminal domain VAA_02312 PF02903 Alpha amylase, N-terminal ig-like domain VAA_02312 PF00128 Alpha amylase, catalytic domain VAA_02313 PF02028 BCCT, betaine/carnitine/choline family transporter VAA_02314 PF00809 Pterin binding enzyme VAA_02314 PF02574 Homocysteine S-methyltransferase VAA_02314 PF02965 Vitamin B12 dependent methionine synthase, activation domain VAA_02314 PF02310 B12 binding domain VAA_02314 PF02607 B12 binding domain VAA_02316 PF09905 DNA-binding protein VF530 VAA_02320 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VAA_02320 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VAA_02321 PF06483 Chitinase C VAA_02321 PF00704 Glycosyl hydrolases family 18 VAA_02322 PF07662 Na+ dependent nucleoside transporter C-terminus VAA_02322 PF07670 Nucleoside recognition VAA_02322 PF01773 Na+ dependent nucleoside transporter N-terminus VAA_02323 PF03466 LysR substrate binding domain VAA_02323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02324 PF13406 Transglycosylase SLT domain VAA_02325 PF05166 YcgL domain VAA_02326 PF05209 Septum formation inhibitor MinC, N-terminal domain VAA_02326 PF03775 Septum formation inhibitor MinC, C-terminal domain VAA_02327 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VAA_02328 PF03776 Septum formation topological specificity factor MinE VAA_02329 PF00570 HRDC domain VAA_02329 PF01612 3'-5' exonuclease VAA_02330 PF00501 AMP-binding enzyme VAA_02330 PF13193 AMP-binding enzyme C-terminal domain VAA_02331 PF00561 alpha/beta hydrolase fold VAA_02334 PF00814 Glycoprotease family VAA_02335 PF13307 Helicase C-terminal domain VAA_02335 PF04851 Type III restriction enzyme, res subunit VAA_02337 PF00551 Formyl transferase VAA_02337 PF01842 ACT domain VAA_02338 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_02338 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VAA_02339 PF01343 Peptidase family S49 VAA_02340 PF00710 Asparaginase, N-terminal VAA_02340 PF17763 Glutaminase/Asparaginase C-terminal domain VAA_02341 PF07023 Protein of unknown function (DUF1315) VAA_02343 PF01641 SelR domain VAA_02344 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_02344 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA_02345 PF01263 Aldose 1-epimerase VAA_02346 PF13847 Methyltransferase domain VAA_02350 PF03692 Putative zinc- or iron-chelating domain VAA_02352 PF02575 YbaB/EbfC DNA-binding family VAA_02353 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VAA_02353 PF12170 DNA polymerase III tau subunit V interacting with alpha VAA_02353 PF12169 DNA polymerase III subunits gamma and tau domain III VAA_02354 PF00156 Phosphoribosyl transferase domain VAA_02355 PF04304 Protein of unknown function (DUF454) VAA_02357 PF00072 Response regulator receiver domain VAA_02358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02358 PF03466 LysR substrate binding domain VAA_02359 PF00881 Nitroreductase family VAA_02360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VAA_02360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VAA_02360 PF00378 Enoyl-CoA hydratase/isomerase VAA_02362 PF00108 Thiolase, N-terminal domain VAA_02362 PF02803 Thiolase, C-terminal domain VAA_02363 PF04542 Sigma-70 region 2 VAA_02363 PF08281 Sigma-70, region 4 VAA_02365 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA_02366 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA_02367 PF12557 Cob(I)alamin adenosyltransferase N terminal VAA_02367 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VAA_02369 PF00485 Phosphoribulokinase / Uridine kinase family VAA_02370 PF10609 NUBPL iron-transfer P-loop NTPase VAA_02371 PF01588 Putative tRNA binding domain VAA_02371 PF09334 tRNA synthetases class I (M) VAA_02373 PF01048 Phosphorylase superfamily VAA_02375 PF00403 Heavy-metal-associated domain VAA_02376 PF03061 Thioesterase superfamily VAA_02376 PF00571 CBS domain VAA_02376 PF07085 DRTGG domain VAA_02376 PF00392 Bacterial regulatory proteins, gntR family VAA_02377 PF07694 5TMR of 5TMR-LYT VAA_02377 PF00990 Diguanylate cyclase, GGDEF domain VAA_02378 PF02391 MoaE protein VAA_02379 PF02597 ThiS family VAA_02380 PF01967 MoaC family VAA_02381 PF00994 Probable molybdopterin binding domain VAA_02382 PF06463 Molybdenum Cofactor Synthesis C VAA_02382 PF04055 Radical SAM superfamily VAA_02383 PF01933 Uncharacterised protein family UPF0052 VAA_02384 PF01627 Hpt domain VAA_02385 PF00158 Sigma-54 interaction domain VAA_02385 PF00072 Response regulator receiver domain VAA_02385 PF02954 Bacterial regulatory protein, Fis family VAA_02386 PF04851 Type III restriction enzyme, res subunit VAA_02386 PF00271 Helicase conserved C-terminal domain VAA_02386 PF02151 UvrB/uvrC motif VAA_02386 PF12344 Ultra-violet resistance protein B VAA_02386 PF17757 UvrB interaction domain VAA_02387 PF02927 Cellulase N-terminal ig-like domain VAA_02387 PF02018 Carbohydrate binding domain VAA_02387 PF00759 Glycosyl hydrolase family 9 VAA_02390 PF00793 DAHP synthetase I family VAA_02393 PF00425 chorismate binding enzyme VAA_02394 PF00501 AMP-binding enzyme VAA_02394 PF13193 AMP-binding enzyme C-terminal domain VAA_02395 PF00857 Isochorismatase family VAA_02395 PF00550 Phosphopantetheine attachment site VAA_02396 PF05977 Transmembrane secretion effector VAA_02398 PF00550 Phosphopantetheine attachment site VAA_02398 PF00668 Condensation domain VAA_02398 PF13193 AMP-binding enzyme C-terminal domain VAA_02398 PF00501 AMP-binding enzyme VAA_02401 PF07693 KAP family P-loop domain VAA_02408 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA_02408 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_02410 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VAA_02411 PF01432 Peptidase family M3 VAA_02412 PF00580 UvrD/REP helicase N-terminal domain VAA_02412 PF13361 UvrD-like helicase C-terminal domain VAA_02413 PF01810 LysE type translocator VAA_02415 PF00892 EamA-like transporter family VAA_02416 PF09382 RQC domain VAA_02416 PF16124 RecQ zinc-binding VAA_02416 PF00570 HRDC domain VAA_02416 PF00271 Helicase conserved C-terminal domain VAA_02416 PF00270 DEAD/DEAH box helicase VAA_02419 PF01418 Helix-turn-helix domain, rpiR family VAA_02419 PF01380 SIS domain VAA_02420 PF01380 SIS domain VAA_02421 PF00367 phosphotransferase system, EIIB VAA_02421 PF02378 Phosphotransferase system, EIIC VAA_02422 PF00005 ABC transporter VAA_02422 PF00664 ABC transporter transmembrane region VAA_02423 PF00593 TonB dependent receptor VAA_02423 PF07715 TonB-dependent Receptor Plug Domain VAA_02424 PF00005 ABC transporter VAA_02425 PF01497 Periplasmic binding protein VAA_02426 PF01032 FecCD transport family VAA_02427 PF03350 Uncharacterized protein family, UPF0114 VAA_02430 PF05193 Peptidase M16 inactive domain VAA_02430 PF00675 Insulinase (Peptidase family M16) VAA_02437 PF01555 DNA methylase VAA_02445 PF01381 Helix-turn-helix VAA_02448 PF03755 YicC-like family, N-terminal region VAA_02448 PF08340 Domain of unknown function (DUF1732) VAA_02449 PF01138 3' exoribonuclease family, domain 1 VAA_02449 PF03725 3' exoribonuclease family, domain 2 VAA_02451 PF03279 Bacterial lipid A biosynthesis acyltransferase VAA_02453 PF00440 Bacterial regulatory proteins, tetR family VAA_02454 PF04127 DNA / pantothenate metabolism flavoprotein VAA_02454 PF02441 Flavoprotein VAA_02455 PF04002 RadC-like JAB domain VAA_02457 PF00471 Ribosomal protein L33 VAA_02459 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VAA_02459 PF06827 Zinc finger found in FPG and IleRS VAA_02459 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VAA_02460 PF01467 Cytidylyltransferase-like VAA_02462 PF00535 Glycosyl transferase family 2 VAA_02463 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VAA_02467 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VAA_02468 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_02469 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VAA_02470 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VAA_02472 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VAA_02473 PF04932 O-Antigen ligase VAA_02475 PF01370 NAD dependent epimerase/dehydratase family VAA_02476 PF16363 GDP-mannose 4,6 dehydratase VAA_02477 PF00483 Nucleotidyl transferase VAA_02478 PF04321 RmlD substrate binding domain VAA_02479 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VAA_02480 PF01061 ABC-2 type transporter VAA_02481 PF00005 ABC transporter VAA_02483 PF01609 Transposase DDE domain VAA_02483 PF13808 DDE_Tnp_1-associated VAA_02487 PF00175 Oxidoreductase NAD-binding domain VAA_02487 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_02487 PF00970 Oxidoreductase FAD-binding domain VAA_02488 PF00483 Nucleotidyl transferase VAA_02489 PF16363 GDP-mannose 4,6 dehydratase VAA_02490 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VAA_02491 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_02491 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_02491 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_02496 PF00535 Glycosyl transferase family 2 VAA_02498 PF05523 WxcM-like, C-terminal VAA_02500 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VAA_02501 PF00535 Glycosyl transferase family 2 VAA_02502 PF00535 Glycosyl transferase family 2 VAA_02504 PF02719 Polysaccharide biosynthesis protein VAA_02505 PF01370 NAD dependent epimerase/dehydratase family VAA_02506 PF02397 Bacterial sugar transferase VAA_02508 PF06082 Exopolysaccharide biosynthesis protein YbjH VAA_02510 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VAA_02512 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VAA_02512 PF02563 Polysaccharide biosynthesis/export protein VAA_02512 PF10531 SLBB domain VAA_02513 PF01451 Low molecular weight phosphotyrosine protein phosphatase VAA_02514 PF13807 G-rich domain on putative tyrosine kinase VAA_02514 PF13614 AAA domain VAA_02514 PF02706 Chain length determinant protein VAA_02520 PF00534 Glycosyl transferases group 1 VAA_02520 PF13439 Glycosyltransferase Family 4 VAA_02521 PF01370 NAD dependent epimerase/dehydratase family VAA_02522 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VAA_02522 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VAA_02522 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VAA_02523 PF00953 Glycosyl transferase family 4 VAA_02524 PF10996 Beta-Casp domain VAA_02524 PF00753 Metallo-beta-lactamase superfamily VAA_02524 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VAA_02525 PF00672 HAMP domain VAA_02525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02526 PF00924 Mechanosensitive ion channel VAA_02527 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_02528 PF04222 Protein of unknown function (DUF416) VAA_02529 PF04480 Protein of unknown function (DUF559) VAA_02530 PF01595 Cyclin M transmembrane N-terminal domain VAA_02530 PF00571 CBS domain VAA_02532 PF00216 Bacterial DNA-binding protein VAA_02534 PF02843 Phosphoribosylglycinamide synthetase, C domain VAA_02534 PF02844 Phosphoribosylglycinamide synthetase, N domain VAA_02534 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VAA_02535 PF02142 MGS-like domain VAA_02535 PF01808 AICARFT/IMPCHase bienzyme VAA_02537 PF13411 MerR HTH family regulatory protein VAA_02538 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02538 PF00672 HAMP domain VAA_02538 PF13426 PAS domain VAA_02540 PF02954 Bacterial regulatory protein, Fis family VAA_02541 PF01207 Dihydrouridine synthase (Dus) VAA_02544 PF00289 Biotin carboxylase, N-terminal domain VAA_02544 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VAA_02544 PF02785 Biotin carboxylase C-terminal domain VAA_02545 PF00364 Biotin-requiring enzyme VAA_02546 PF01220 Dehydroquinase class II VAA_02547 PF00501 AMP-binding enzyme VAA_02547 PF16177 Acetyl-coenzyme A synthetase N-terminus VAA_02547 PF13193 AMP-binding enzyme C-terminal domain VAA_02550 PF12832 MFS_1 like family VAA_02551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02551 PF00512 His Kinase A (phospho-acceptor) domain VAA_02551 PF01627 Hpt domain VAA_02551 PF00072 Response regulator receiver domain VAA_02551 PF00672 HAMP domain VAA_02552 PF00474 Sodium:solute symporter family VAA_02554 PF03471 Transporter associated domain VAA_02554 PF02080 TrkA-C domain VAA_02554 PF00999 Sodium/hydrogen exchanger family VAA_02555 PF00196 Bacterial regulatory proteins, luxR family VAA_02555 PF00072 Response regulator receiver domain VAA_02556 PF11412 Disulphide bond corrector protein DsbC VAA_02556 PF02683 Cytochrome C biogenesis protein transmembrane region VAA_02557 PF01316 Arginine repressor, DNA binding domain VAA_02557 PF02863 Arginine repressor, C-terminal domain VAA_02559 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VAA_02559 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VAA_02560 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA_02560 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA_02561 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA_02561 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA_02562 PF00696 Amino acid kinase family VAA_02565 PF03606 C4-dicarboxylate anaerobic carrier VAA_02566 PF03605 Anaerobic c4-dicarboxylate membrane transporter VAA_02568 PF10415 Fumarase C C-terminus VAA_02568 PF00206 Lyase VAA_02569 PF04186 FxsA cytoplasmic membrane protein VAA_02570 PF00313 'Cold-shock' DNA-binding domain VAA_02571 PF00588 SpoU rRNA Methylase family VAA_02572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02572 PF16527 Two-component sensor protein CpxA, periplasmic domain VAA_02572 PF00512 His Kinase A (phospho-acceptor) domain VAA_02572 PF00672 HAMP domain VAA_02573 PF00072 Response regulator receiver domain VAA_02573 PF00486 Transcriptional regulatory protein, C terminal VAA_02575 PF16916 Dimerisation domain of Zinc Transporter VAA_02575 PF01545 Cation efflux family VAA_02577 PF00365 Phosphofructokinase VAA_02578 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VAA_02580 PF02219 Methylenetetrahydrofolate reductase VAA_02581 PF00696 Amino acid kinase family VAA_02581 PF00742 Homoserine dehydrogenase VAA_02581 PF03447 Homoserine dehydrogenase, NAD binding domain VAA_02582 PF01053 Cys/Met metabolism PLP-dependent enzyme VAA_02583 PF01340 Met Apo-repressor, MetJ VAA_02584 PF03949 Malic enzyme, NAD binding domain VAA_02584 PF00390 Malic enzyme, N-terminal domain VAA_02585 PF01197 Ribosomal protein L31 VAA_02586 PF17764 3′ DNA-binding domain (3′BD) VAA_02586 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VAA_02586 PF00270 DEAD/DEAH box helicase VAA_02586 PF00271 Helicase conserved C-terminal domain VAA_02586 PF18074 Primosomal protein N C-terminal domain VAA_02587 PF00356 Bacterial regulatory proteins, lacI family VAA_02589 PF00227 Proteasome subunit VAA_02590 PF00004 ATPase family associated with various cellular activities (AAA) VAA_02590 PF07724 AAA domain (Cdc48 subfamily) VAA_02590 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_02591 PF01040 UbiA prenyltransferase family VAA_02592 PF03737 Aldolase/RraA VAA_02593 PF01554 MatE VAA_02595 PF00121 Triosephosphate isomerase VAA_02600 PF00166 Chaperonin 10 Kd subunit VAA_02601 PF00118 TCP-1/cpn60 chaperonin family VAA_02603 PF02308 MgtC family VAA_02604 PF04055 Radical SAM superfamily VAA_02605 PF09285 Elongation factor P, C-terminal VAA_02605 PF01132 Elongation factor P (EF-P) OB domain VAA_02605 PF08207 Elongation factor P (EF-P) KOW-like domain VAA_02606 PF02313 Fumarate reductase subunit D VAA_02607 PF02300 Fumarate reductase subunit C VAA_02608 PF13085 2Fe-2S iron-sulfur cluster binding domain VAA_02608 PF13183 4Fe-4S dicluster domain VAA_02609 PF00890 FAD binding domain VAA_02609 PF02910 Fumarate reductase flavoprotein C-term VAA_02610 PF00152 tRNA synthetases class II (D, K and N) VAA_02611 PF00581 Rhodanese-like domain VAA_02612 PF02556 Preprotein translocase subunit SecB VAA_02613 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VAA_02613 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VAA_02614 PF06426 Serine acetyltransferase, N-terminal VAA_02614 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_02618 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA_02618 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA_02619 PF00696 Amino acid kinase family VAA_02620 PF00764 Arginosuccinate synthase VAA_02622 PF14698 Argininosuccinate lyase C-terminal VAA_02622 PF00206 Lyase VAA_02622 PF00583 Acetyltransferase (GNAT) family VAA_02624 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA_02624 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_02625 PF08534 Redoxin VAA_02625 PF00462 Glutaredoxin VAA_02626 PF03466 LysR substrate binding domain VAA_02626 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02627 PF00912 Transglycosylase VAA_02627 PF17092 Penicillin-binding protein OB-like domain VAA_02627 PF00905 Penicillin binding protein transpeptidase domain VAA_02632 PF11741 AMIN domain VAA_02632 PF07660 Secretin and TonB N terminus short domain VAA_02632 PF03958 Bacterial type II/III secretion system short domain VAA_02632 PF00263 Bacterial type II and III secretion system protein VAA_02633 PF01202 Shikimate kinase VAA_02636 PF02086 D12 class N6 adenine-specific DNA methyltransferase VAA_02637 PF00834 Ribulose-phosphate 3 epimerase family VAA_02638 PF13419 Haloacid dehalogenase-like hydrolase VAA_02639 PF00579 tRNA synthetases class I (W and Y) VAA_02642 PF03466 LysR substrate binding domain VAA_02642 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02644 PF01494 FAD binding domain VAA_02646 PF00117 Glutamine amidotransferase class-I VAA_02647 PF00202 Aminotransferase class-III VAA_02648 PF04958 Arginine N-succinyltransferase beta subunit VAA_02651 PF00027 Cyclic nucleotide-binding domain VAA_02651 PF13545 Crp-like helix-turn-helix domain VAA_02652 PF00485 Phosphoribulokinase / Uridine kinase family VAA_02653 PF06794 Uncharacterised protein family (UPF0270) VAA_02654 PF00561 alpha/beta hydrolase fold VAA_02656 PF00005 ABC transporter VAA_02656 PF12848 ABC transporter VAA_02657 PF02525 Flavodoxin-like fold VAA_02658 PF02254 TrkA-N domain VAA_02658 PF00999 Sodium/hydrogen exchanger family VAA_02659 PF09526 Probable metal-binding protein (DUF2387) VAA_02660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_02662 PF01112 Asparaginase VAA_02663 PF00709 Adenylosuccinate synthetase VAA_02665 PF08238 Sel1 repeat VAA_02666 PF00575 S1 RNA binding domain VAA_02666 PF00773 RNB domain VAA_02666 PF08206 Ribonuclease B OB domain VAA_02666 PF08461 Ribonuclease R winged-helix domain VAA_02666 PF17876 Cold shock domain VAA_02667 PF08032 RNA 2'-O ribose methyltransferase substrate binding VAA_02667 PF00588 SpoU rRNA Methylase family VAA_02669 PF00338 Ribosomal protein S10p/S20e VAA_02672 PF00276 Ribosomal protein L23 VAA_02673 PF03947 Ribosomal Proteins L2, C-terminal domain VAA_02673 PF00181 Ribosomal Proteins L2, RNA binding domain VAA_02674 PF00203 Ribosomal protein S19 VAA_02675 PF00237 Ribosomal protein L22p/L17e VAA_02676 PF00189 Ribosomal protein S3, C-terminal domain VAA_02676 PF07650 KH domain VAA_02677 PF00252 Ribosomal protein L16p/L10e VAA_02678 PF00831 Ribosomal L29 protein VAA_02679 PF00366 Ribosomal protein S17 VAA_02680 PF00238 Ribosomal protein L14p/L23e VAA_02682 PF00673 ribosomal L5P family C-terminus VAA_02682 PF00281 Ribosomal protein L5 VAA_02683 PF00253 Ribosomal protein S14p/S29e VAA_02684 PF00410 Ribosomal protein S8 VAA_02685 PF00347 Ribosomal protein L6 VAA_02686 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VAA_02688 PF00327 Ribosomal protein L30p/L7e VAA_02689 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VAA_02690 PF00344 SecY translocase VAA_02691 PF00444 Ribosomal protein L36 VAA_02692 PF00416 Ribosomal protein S13/S18 VAA_02693 PF00411 Ribosomal protein S11 VAA_02694 PF01479 S4 domain VAA_02694 PF00163 Ribosomal protein S4/S9 N-terminal domain VAA_02696 PF01196 Ribosomal protein L17 VAA_02697 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA_02697 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_02698 PF04225 Opacity-associated protein A LysM-like domain VAA_02698 PF08525 Opacity-associated protein A N-terminal motif VAA_02699 PF13673 Acetyltransferase (GNAT) domain VAA_02700 PF00271 Helicase conserved C-terminal domain VAA_02700 PF03880 DbpA RNA binding domain VAA_02700 PF00270 DEAD/DEAH box helicase VAA_02706 PF04262 Glutamate-cysteine ligase VAA_02706 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VAA_02706 PF18419 ATP-grasp-like domain VAA_02709 PF00149 Calcineurin-like phosphoesterase VAA_02709 PF02872 5'-nucleotidase, C-terminal domain VAA_02710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA_02710 PF10414 Sirohaem synthase dimerisation region VAA_02710 PF14824 Sirohaem biosynthesis protein central VAA_02711 PF01507 Phosphoadenosine phosphosulfate reductase family VAA_02712 PF00009 Elongation factor Tu GTP binding domain VAA_02717 PF00005 ABC transporter VAA_02720 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VAA_02721 PF01625 Peptide methionine sulfoxide reductase VAA_02722 PF17243 POTRA domain TamA domain 1 VAA_02722 PF01103 Surface antigen VAA_02722 PF07244 Surface antigen variable number repeat VAA_02723 PF04357 TamB, inner membrane protein subunit of TAM complex VAA_02724 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VAA_02725 PF00719 Inorganic pyrophosphatase VAA_02726 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VAA_02727 PF02875 Mur ligase family, glutamate ligase domain VAA_02727 PF01225 Mur ligase family, catalytic domain VAA_02727 PF08245 Mur ligase middle domain VAA_02728 PF02441 Flavoprotein VAA_02730 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02731 PF00005 ABC transporter VAA_02732 PF04751 Protein of unknown function (DUF615) VAA_02733 PF01523 Putative modulator of DNA gyrase VAA_02734 PF00571 CBS domain VAA_02734 PF03448 MgtE intracellular N domain VAA_02734 PF01769 Divalent cation transporter VAA_02735 PF00381 PTS HPr component phosphorylation site VAA_02736 PF03668 P-loop ATPase protein family VAA_02737 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02738 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VAA_02739 PF04963 Sigma-54 factor, core binding domain VAA_02739 PF04552 Sigma-54, DNA binding domain VAA_02739 PF00309 Sigma-54 factor, Activator interacting domain (AID) VAA_02740 PF00005 ABC transporter VAA_02740 PF12399 Branched-chain amino acid ATP-binding cassette transporter VAA_02741 PF03968 OstA-like protein VAA_02744 PF01380 SIS domain VAA_02744 PF00571 CBS domain VAA_02745 PF01699 Sodium/calcium exchanger protein VAA_02746 PF01699 Sodium/calcium exchanger protein VAA_02748 PF00005 ABC transporter VAA_02749 PF02405 Permease MlaE VAA_02750 PF02470 MlaD protein VAA_02751 PF05494 MlaC protein VAA_02753 PF01722 BolA-like protein VAA_02754 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VAA_02755 PF01553 Acyltransferase VAA_02756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02756 PF13188 PAS domain VAA_02756 PF00072 Response regulator receiver domain VAA_02756 PF00512 His Kinase A (phospho-acceptor) domain VAA_02756 PF08448 PAS fold VAA_02758 PF01042 Endoribonuclease L-PSP VAA_02759 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VAA_02759 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VAA_02760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA_02760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA_02763 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA_02763 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA_02764 PF13638 PIN domain VAA_02764 PF02562 PhoH-like protein VAA_02765 PF00271 Helicase conserved C-terminal domain VAA_02765 PF00176 SNF2 family N-terminal domain VAA_02765 PF18339 RapA N-terminal Tudor like domain 1 VAA_02765 PF18337 RapA N-terminal Tudor like domain VAA_02765 PF12137 RNA polymerase recycling family C-terminal VAA_02768 PF00849 RNA pseudouridylate synthase VAA_02769 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_02769 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA_02770 PF10458 Valyl tRNA synthetase tRNA binding arm VAA_02770 PF08264 Anticodon-binding domain of tRNA VAA_02770 PF00133 tRNA synthetases class I (I, L, M and V) VAA_02771 PF04364 DNA polymerase III chi subunit, HolC VAA_02772 PF02789 Cytosol aminopeptidase family, N-terminal domain VAA_02772 PF00883 Cytosol aminopeptidase family, catalytic domain VAA_02773 PF03739 Lipopolysaccharide export system permease LptF/LptG VAA_02774 PF03739 Lipopolysaccharide export system permease LptF/LptG VAA_02784 PF03466 LysR substrate binding domain VAA_02784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02787 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VAA_02788 PF01551 Peptidase family M23 VAA_02788 PF04225 Opacity-associated protein A LysM-like domain VAA_02789 PF02378 Phosphotransferase system, EIIC VAA_02789 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_02789 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02790 PF08125 Mannitol dehydrogenase C-terminal domain VAA_02790 PF01232 Mannitol dehydrogenase Rossmann domain VAA_02791 PF05068 Mannitol repressor VAA_02792 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA_02793 PF03600 Citrate transporter VAA_02794 PF00375 Sodium:dicarboxylate symporter family VAA_02795 PF07681 DoxX VAA_02799 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA_02799 PF00529 HlyD membrane-fusion protein of T1SS VAA_02800 PF01047 MarR family VAA_02801 PF04393 Protein of unknown function (DUF535) VAA_02802 PF00563 EAL domain VAA_02802 PF12792 CSS motif domain associated with EAL VAA_02803 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VAA_02804 PF00581 Rhodanese-like domain VAA_02806 PF00005 ABC transporter VAA_02809 PF08402 TOBE domain VAA_02809 PF00005 ABC transporter VAA_02811 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02814 PF00392 Bacterial regulatory proteins, gntR family VAA_02814 PF07702 UTRA domain VAA_02816 PF01042 Endoribonuclease L-PSP VAA_02819 PF04055 Radical SAM superfamily VAA_02820 PF11230 Protein of unknown function (DUF3029) VAA_02822 PF00107 Zinc-binding dehydrogenase VAA_02822 PF16884 N-terminal domain of oxidoreductase VAA_02823 PF00440 Bacterial regulatory proteins, tetR family VAA_02823 PF16925 Tetracyclin repressor-like, C-terminal domain VAA_02826 PF00072 Response regulator receiver domain VAA_02826 PF00486 Transcriptional regulatory protein, C terminal VAA_02828 PF00849 RNA pseudouridylate synthase VAA_02832 PF13737 Transposase DDE domain VAA_02843 PF17871 AAA lid domain VAA_02843 PF07724 AAA domain (Cdc48 subfamily) VAA_02843 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_02843 PF00004 ATPase family associated with various cellular activities (AAA) VAA_02849 PF04717 Type VI secretion system, phage-baseplate injector VAA_02849 PF16671 Actin cross-linking domain VAA_02860 PF00939 Sodium:sulfate symporter transmembrane region VAA_02861 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VAA_02862 PF08329 Chitinase A, N-terminal domain VAA_02862 PF00704 Glycosyl hydrolases family 18 VAA_02863 PF00392 Bacterial regulatory proteins, gntR family VAA_02863 PF07702 UTRA domain VAA_02864 PF00005 ABC transporter VAA_02866 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02866 PF00672 HAMP domain VAA_02869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02869 PF00672 HAMP domain VAA_02869 PF02743 Cache domain VAA_02872 PF01569 PAP2 superfamily VAA_02873 PF04286 Protein of unknown function (DUF445) VAA_02874 PF00664 ABC transporter transmembrane region VAA_02874 PF00005 ABC transporter VAA_02878 PF00990 Diguanylate cyclase, GGDEF domain VAA_02878 PF08448 PAS fold VAA_02878 PF08447 PAS fold VAA_02878 PF00563 EAL domain VAA_02881 PF01261 Xylose isomerase-like TIM barrel VAA_02882 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA_02884 PF00596 Class II Aldolase and Adducin N-terminal domain VAA_02885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02886 PF03611 PTS system sugar-specific permease component VAA_02888 PF08220 DeoR-like helix-turn-helix domain VAA_02888 PF00455 DeoR C terminal sensor domain VAA_02890 PF00128 Alpha amylase, catalytic domain VAA_02890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA_02891 PF02264 LamB porin VAA_02894 PF01547 Bacterial extracellular solute-binding protein VAA_02895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02895 PF03466 LysR substrate binding domain VAA_02898 PF00375 Sodium:dicarboxylate symporter family VAA_02900 PF02630 SCO1/SenC VAA_02903 PF03616 Sodium/glutamate symporter VAA_02904 PF07238 PilZ domain VAA_02904 PF12945 Flagellar protein YcgR VAA_02908 PF00529 HlyD membrane-fusion protein of T1SS VAA_02908 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA_02909 PF11742 Protein of unknown function (DUF3302) VAA_02910 PF00990 Diguanylate cyclase, GGDEF domain VAA_02913 PF01048 Phosphorylase superfamily VAA_02914 PF08349 Protein of unknown function (DUF1722) VAA_02915 PF13411 MerR HTH family regulatory protein VAA_02916 PF03441 FAD binding domain of DNA photolyase VAA_02916 PF00875 DNA photolyase VAA_02917 PF17969 L,D-transpeptidase C-terminal domain VAA_02917 PF03734 L,D-transpeptidase catalytic domain VAA_02917 PF01476 LysM domain VAA_02919 PF00270 DEAD/DEAH box helicase VAA_02919 PF00271 Helicase conserved C-terminal domain VAA_02920 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VAA_02920 PF00326 Prolyl oligopeptidase family VAA_02922 PF07715 TonB-dependent Receptor Plug Domain VAA_02922 PF00593 TonB dependent receptor VAA_02927 PF01676 Metalloenzyme superfamily VAA_02928 PF01168 Alanine racemase, N-terminal domain VAA_02929 PF10797 Protein of unknown function VAA_02930 PF10941 Protein of unknown function DUF2620 VAA_02931 PF02126 Phosphotriesterase family VAA_02933 PF14503 YhfZ C-terminal domain VAA_02933 PF14502 Helix-turn-helix domain VAA_02934 PF12262 Bacterial virulence factor lipase N-terminal VAA_02936 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA_02937 PF00128 Alpha amylase, catalytic domain VAA_02939 PF00248 Aldo/keto reductase family VAA_02942 PF12704 MacB-like periplasmic core domain VAA_02942 PF02687 FtsX-like permease family VAA_02942 PF00005 ABC transporter VAA_02943 PF02687 FtsX-like permease family VAA_02943 PF12704 MacB-like periplasmic core domain VAA_02946 PF06580 Histidine kinase VAA_02946 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02947 PF00072 Response regulator receiver domain VAA_02947 PF04397 LytTr DNA-binding domain VAA_02948 PF00360 Phytochrome region VAA_02948 PF00990 Diguanylate cyclase, GGDEF domain VAA_02948 PF01590 GAF domain VAA_02948 PF00563 EAL domain VAA_02950 PF03605 Anaerobic c4-dicarboxylate membrane transporter VAA_02952 PF00072 Response regulator receiver domain VAA_02953 PF00512 His Kinase A (phospho-acceptor) domain VAA_02953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02953 PF01627 Hpt domain VAA_02953 PF00072 Response regulator receiver domain VAA_02953 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VAA_02953 PF00672 HAMP domain VAA_02954 PF00672 HAMP domain VAA_02954 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02955 PF13520 Amino acid permease VAA_02960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_02960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA_02961 PF00072 Response regulator receiver domain VAA_02961 PF00672 HAMP domain VAA_02961 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02961 PF00512 His Kinase A (phospho-acceptor) domain VAA_02961 PF01627 Hpt domain VAA_02961 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VAA_02964 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA_02965 PF00873 AcrB/AcrD/AcrF family VAA_02967 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_02968 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA_02969 PF02566 OsmC-like protein VAA_02970 PF14602 Hexapeptide repeat of succinyl-transferase VAA_02970 PF12464 Maltose acetyltransferase VAA_02971 PF00892 EamA-like transporter family VAA_02973 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02973 PF03466 LysR substrate binding domain VAA_02975 PF03466 LysR substrate binding domain VAA_02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02976 PF00501 AMP-binding enzyme VAA_02976 PF13193 AMP-binding enzyme C-terminal domain VAA_02977 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VAA_02978 PF01329 Pterin 4 alpha carbinolamine dehydratase VAA_02980 PF00672 HAMP domain VAA_02980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02980 PF02743 Cache domain VAA_02981 PF01554 MatE VAA_02982 PF02311 AraC-like ligand binding domain VAA_02982 PF12833 Helix-turn-helix domain VAA_02984 PF11849 Domain of unknown function (DUF3369) VAA_02985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02985 PF00512 His Kinase A (phospho-acceptor) domain VAA_02985 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_02987 PF07690 Major Facilitator Superfamily VAA_02988 PF00012 Hsp70 protein VAA_02990 PF01037 Lrp/AsnC ligand binding domain VAA_02991 PF00657 GDSL-like Lipase/Acylhydrolase VAA_02992 PF16458 Beta-prism lectin VAA_02992 PF07968 Leukocidin/Hemolysin toxin family VAA_02992 PF12563 Hemolytic toxin N terminal VAA_02993 PF00561 alpha/beta hydrolase fold VAA_02994 PF03280 Proteobacterial lipase chaperone protein VAA_02995 PF00801 PKD domain VAA_02995 PF05547 Immune inhibitor A peptidase M6 VAA_02998 PF04151 Bacterial pre-peptidase C-terminal domain VAA_02998 PF08453 Peptidase family M9 N-terminal VAA_02998 PF01752 Collagenase VAA_03000 PF01497 Periplasmic binding protein VAA_03001 PF01032 FecCD transport family VAA_03002 PF01032 FecCD transport family VAA_03003 PF00005 ABC transporter VAA_03004 PF00871 Acetokinase family VAA_03005 PF00579 tRNA synthetases class I (W and Y) VAA_03006 PF00196 Bacterial regulatory proteins, luxR family VAA_03011 PF13007 Transposase C of IS166 homeodomain VAA_03011 PF03050 Transposase IS66 family VAA_03011 PF13005 zinc-finger binding domain of transposase IS66 VAA_03011 PF13817 IS66 C-terminal element VAA_03012 PF13333 Integrase core domain VAA_03012 PF13276 HTH-like domain VAA_03012 PF00665 Integrase core domain VAA_03015 PF00486 Transcriptional regulatory protein, C terminal VAA_03018 PF00665 Integrase core domain VAA_03019 PF01527 Transposase VAA_03021 PF08239 Bacterial SH3 domain VAA_03021 PF00069 Protein kinase domain VAA_03026 PF16697 Inner membrane component of T3SS, cytoplasmic domain VAA_03030 PF07478 D-ala D-ala ligase C-terminus VAA_03031 PF07724 AAA domain (Cdc48 subfamily) VAA_03031 PF17871 AAA lid domain VAA_03031 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_03031 PF00004 ATPase family associated with various cellular activities (AAA) VAA_03042 PF16671 Actin cross-linking domain VAA_03042 PF04717 Type VI secretion system, phage-baseplate injector VAA_03048 PF00589 Phage integrase family VAA_03048 PF02899 Phage integrase, N-terminal SAM-like domain VAA_03051 PF00990 Diguanylate cyclase, GGDEF domain VAA_03051 PF00072 Response regulator receiver domain VAA_03053 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA_03053 PF03714 Bacterial pullanase-associated domain VAA_03053 PF18494 Pullulanase Ins domain VAA_03053 PF17967 Pullulanase N2 domain VAA_03053 PF11852 Domain of unknown function (DUF3372) VAA_03054 PF01584 CheW-like domain VAA_03054 PF00072 Response regulator receiver domain VAA_03056 PF00072 Response regulator receiver domain VAA_03056 PF12431 Transcriptional regulator VAA_03057 PF17203 Single cache domain 3 VAA_03057 PF00989 PAS fold VAA_03057 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VAA_03057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03062 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA_03066 PF04204 Homoserine O-succinyltransferase VAA_03070 PF05971 RNA methyltransferase VAA_03071 PF01863 Protein of unknown function DUF45 VAA_03074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03074 PF03466 LysR substrate binding domain VAA_03079 PF01032 FecCD transport family VAA_03080 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VAA_03082 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VAA_03083 PF02654 Cobalamin-5-phosphate synthase VAA_03085 PF12146 Serine aminopeptidase, S33 VAA_03085 PF11713 Peptidase C80 family VAA_03085 PF07634 RtxA repeat VAA_03085 PF16671 Actin cross-linking domain VAA_03085 PF11647 Membrane Localization Domain VAA_03087 PF02794 RTX toxin acyltransferase family VAA_03089 PF03412 Peptidase C39 family VAA_03089 PF00005 ABC transporter VAA_03089 PF00664 ABC transporter transmembrane region VAA_03091 PF03412 Peptidase C39 family VAA_03091 PF00005 ABC transporter VAA_03091 PF00664 ABC transporter transmembrane region VAA_03092 PF02743 Cache domain VAA_03092 PF00672 HAMP domain VAA_03092 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03094 PF13460 NAD(P)H-binding VAA_03096 PF00929 Exonuclease VAA_03096 PF08411 Exonuclease C-terminal VAA_03097 PF03788 LrgA family VAA_03098 PF04172 LrgB-like family VAA_03099 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_03099 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_03100 PF08447 PAS fold VAA_03100 PF08448 PAS fold VAA_03100 PF00563 EAL domain VAA_03100 PF00990 Diguanylate cyclase, GGDEF domain VAA_03101 PF02222 ATP-grasp domain VAA_03102 PF13426 PAS domain VAA_03102 PF08447 PAS fold VAA_03102 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03104 PF05724 Thiopurine S-methyltransferase (TPMT) VAA_03107 PF03483 B3/4 domain VAA_03107 PF03484 tRNA synthetase B5 domain VAA_03107 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VAA_03107 PF01588 Putative tRNA binding domain VAA_03107 PF03147 Ferredoxin-fold anticodon binding domain VAA_03108 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VAA_03108 PF01409 tRNA synthetases class II core domain (F) VAA_03109 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VAA_03109 PF01409 tRNA synthetases class II core domain (F) VAA_03114 PF01066 CDP-alcohol phosphatidyltransferase VAA_03115 PF01541 GIY-YIG catalytic domain VAA_03115 PF08459 UvrC Helix-hairpin-helix N-terminal VAA_03115 PF02151 UvrB/uvrC motif VAA_03116 PF00072 Response regulator receiver domain VAA_03116 PF00196 Bacterial regulatory proteins, luxR family VAA_03117 PF00136 DNA polymerase family B VAA_03117 PF03104 DNA polymerase family B, exonuclease domain VAA_03119 PF09285 Elongation factor P, C-terminal VAA_03119 PF08207 Elongation factor P (EF-P) KOW-like domain VAA_03119 PF01132 Elongation factor P (EF-P) OB domain VAA_03120 PF04269 Protein of unknown function, DUF440 VAA_03123 PF00392 Bacterial regulatory proteins, gntR family VAA_03123 PF07702 UTRA domain VAA_03124 PF01979 Amidohydrolase family VAA_03125 PF00491 Arginase family VAA_03126 PF17391 Urocanase N-terminal domain VAA_03126 PF17392 Urocanase C-terminal domain VAA_03126 PF01175 Urocanase Rossmann-like domain VAA_03127 PF00221 Aromatic amino acid lyase VAA_03130 PF02913 FAD linked oxidases, C-terminal domain VAA_03130 PF01565 FAD binding domain VAA_03130 PF13183 4Fe-4S dicluster domain VAA_03137 PF09317 Domain of unknown function (DUF1974) VAA_03137 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VAA_03137 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VAA_03137 PF02770 Acyl-CoA dehydrogenase, middle domain VAA_03138 PF16295 Tetracyclin repressor-like, C-terminal domain VAA_03138 PF00440 Bacterial regulatory proteins, tetR family VAA_03141 PF00171 Aldehyde dehydrogenase family VAA_03142 PF00563 EAL domain VAA_03142 PF13188 PAS domain VAA_03142 PF03707 Bacterial signalling protein N terminal repeat VAA_03142 PF00990 Diguanylate cyclase, GGDEF domain VAA_03144 PF01966 HD domain VAA_03144 PF13286 Phosphohydrolase-associated domain VAA_03146 PF07728 AAA domain (dynein-related subfamily) VAA_03146 PF12102 Domain of unknown function (DUF3578) VAA_03151 PF16331 TolA binding protein trimerisation VAA_03151 PF13525 Outer membrane lipoprotein VAA_03152 PF00691 OmpA family VAA_03155 PF02472 Biopolymer transport protein ExbD/TolR VAA_03156 PF01618 MotA/TolQ/ExbB proton channel family VAA_03157 PF03061 Thioesterase superfamily VAA_03158 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) VAA_03159 PF08173 Membrane bound YbgT-like protein VAA_03160 PF02322 Cytochrome bd terminal oxidase subunit II VAA_03161 PF01654 Cytochrome bd terminal oxidase subunit I VAA_03163 PF05496 Holliday junction DNA helicase RuvB P-loop domain VAA_03163 PF05491 RuvB C-terminal winged helix domain VAA_03163 PF17864 RuvB AAA lid domain VAA_03164 PF07499 RuvA, C-terminal domain VAA_03164 PF01330 RuvA N terminal domain VAA_03165 PF02075 Crossover junction endodeoxyribonuclease RuvC VAA_03166 PF09190 DALR domain VAA_03166 PF01406 tRNA synthetases class I (C) catalytic domain VAA_03167 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VAA_03168 PF00149 Calcineurin-like phosphoesterase VAA_03170 PF00563 EAL domain VAA_03170 PF08668 HDOD domain VAA_03173 PF06733 DEAD_2 VAA_03173 PF13307 Helicase C-terminal domain VAA_03174 PF01925 Sulfite exporter TauE/SafE VAA_03175 PF07445 Primosomal replication protein priC VAA_03176 PF10689 Protein of unknown function (DUF2496) VAA_03177 PF00672 HAMP domain VAA_03177 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03178 PF03372 Endonuclease/Exonuclease/phosphatase family VAA_03179 PF00528 Binding-protein-dependent transport system inner membrane component VAA_03180 PF00528 Binding-protein-dependent transport system inner membrane component VAA_03181 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_03182 PF00005 ABC transporter VAA_03184 PF01228 Glycine radical VAA_03184 PF02901 Pyruvate formate lyase-like VAA_03188 PF00672 HAMP domain VAA_03188 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03189 PF04055 Radical SAM superfamily VAA_03192 PF06798 PrkA serine protein kinase C-terminal domain VAA_03192 PF08298 PrkA AAA domain VAA_03194 PF04285 Protein of unknown function (DUF444) VAA_03195 PF04293 SpoVR like protein VAA_03197 PF02348 Cytidylyltransferase VAA_03198 PF03966 Trm112p-like protein VAA_03199 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VAA_03200 PF00005 ABC transporter VAA_03200 PF00664 ABC transporter transmembrane region VAA_03201 PF00753 Metallo-beta-lactamase superfamily VAA_03201 PF03772 Competence protein VAA_03201 PF13567 Domain of unknown function (DUF4131) VAA_03203 PF02687 FtsX-like permease family VAA_03203 PF12704 MacB-like periplasmic core domain VAA_03204 PF00005 ABC transporter VAA_03205 PF02687 FtsX-like permease family VAA_03205 PF12704 MacB-like periplasmic core domain VAA_03207 PF17757 UvrB interaction domain VAA_03207 PF00270 DEAD/DEAH box helicase VAA_03207 PF02559 CarD-like/TRCF domain VAA_03207 PF00271 Helicase conserved C-terminal domain VAA_03207 PF03461 TRCF domain VAA_03209 PF12563 Hemolytic toxin N terminal VAA_03209 PF16458 Beta-prism lectin VAA_03209 PF07968 Leukocidin/Hemolysin toxin family VAA_0321 PF00392 Bacterial regulatory proteins, gntR family VAA_0321 PF07840 FadR C-terminal domain VAA_03211 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_03214 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VAA_03214 PF13036 Peptidoglycan-synthase activator LpoB VAA_03218 PF01230 HIT domain VAA_03219 PF00672 HAMP domain VAA_03219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03224 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VAA_03225 PF02600 Disulfide bond formation protein DsbB VAA_03227 PF08241 Methyltransferase domain VAA_03228 PF00005 ABC transporter VAA_03229 PF00155 Aminotransferase class I and II VAA_03230 PF04055 Radical SAM superfamily VAA_03230 PF06968 Biotin and Thiamin Synthesis associated domain VAA_03231 PF00202 Aminotransferase class-III VAA_03232 PF02403 Seryl-tRNA synthetase N-terminal domain VAA_03232 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA_03233 PF00004 ATPase family associated with various cellular activities (AAA) VAA_03233 PF12002 MgsA AAA+ ATPase C terminal VAA_03233 PF16193 AAA C-terminal domain VAA_03234 PF03548 Outer membrane lipoprotein carrier protein LolA VAA_03236 PF07516 SecA Wing and Scaffold domain VAA_03236 PF02810 SEC-C motif VAA_03236 PF07517 SecA DEAD-like domain VAA_03236 PF01043 SecA preprotein cross-linking domain VAA_03237 PF01207 Dihydrouridine synthase (Dus) VAA_03239 PF02653 Branched-chain amino acid transport system / permease component VAA_03241 PF04217 Protein of unknown function, DUF412 VAA_03242 PF00871 Acetokinase family VAA_03243 PF01515 Phosphate acetyl/butaryl transferase VAA_03243 PF07085 DRTGG domain VAA_03244 PF13409 Glutathione S-transferase, N-terminal domain VAA_03245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_03245 PF00005 ABC transporter VAA_03246 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_03246 PF00005 ABC transporter VAA_03247 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA_03247 PF00528 Binding-protein-dependent transport system inner membrane component VAA_03248 PF00528 Binding-protein-dependent transport system inner membrane component VAA_03250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_03252 PF00563 EAL domain VAA_03252 PF00990 Diguanylate cyclase, GGDEF domain VAA_03252 PF03707 Bacterial signalling protein N terminal repeat VAA_03253 PF00512 His Kinase A (phospho-acceptor) domain VAA_03253 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03253 PF09308 LuxQ, periplasmic VAA_03253 PF00072 Response regulator receiver domain VAA_03254 PF04820 Tryptophan halogenase VAA_03259 PF00550 Phosphopantetheine attachment site VAA_03260 PF00550 Phosphopantetheine attachment site VAA_03262 PF00501 AMP-binding enzyme VAA_03262 PF13193 AMP-binding enzyme C-terminal domain VAA_03264 PF00535 Glycosyl transferase family 2 VAA_03265 PF00221 Aromatic amino acid lyase VAA_03270 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA_03270 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA_03271 PF07977 FabA-like domain VAA_03273 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA_03273 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA_03274 PF06629 MltA-interacting protein MipA VAA_03277 PF01081 KDPG and KHG aldolase VAA_03278 PF02447 GntP family permease VAA_03279 PF01202 Shikimate kinase VAA_03280 PF00920 Dehydratase family VAA_03281 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA_03281 PF00356 Bacterial regulatory proteins, lacI family VAA_03285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03285 PF00672 HAMP domain VAA_03285 PF00512 His Kinase A (phospho-acceptor) domain VAA_03286 PF00486 Transcriptional regulatory protein, C terminal VAA_03286 PF00072 Response regulator receiver domain VAA_03287 PF02080 TrkA-C domain VAA_03287 PF06826 Predicted Permease Membrane Region VAA_03288 PF01810 LysE type translocator VAA_03290 PF01037 Lrp/AsnC ligand binding domain VAA_03291 PF08019 Phosphoethanolamine transferase EptA/EptB VAA_03291 PF00884 Sulfatase VAA_03292 PF00512 His Kinase A (phospho-acceptor) domain VAA_03292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03292 PF08521 Two-component sensor kinase N-terminal VAA_03293 PF00072 Response regulator receiver domain VAA_03293 PF00486 Transcriptional regulatory protein, C terminal VAA_03295 PF00106 short chain dehydrogenase VAA_03297 PF00501 AMP-binding enzyme VAA_03300 PF03466 LysR substrate binding domain VAA_03300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03301 PF00990 Diguanylate cyclase, GGDEF domain VAA_03303 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VAA_03304 PF09619 Type III secretion system lipoprotein chaperone (YscW) VAA_03306 PF13404 AsnC-type helix-turn-helix domain VAA_03306 PF01037 Lrp/AsnC ligand binding domain VAA_03307 PF00291 Pyridoxal-phosphate dependent enzyme VAA_03310 PF07690 Major Facilitator Superfamily VAA_03313 PF13193 AMP-binding enzyme C-terminal domain VAA_03313 PF00501 AMP-binding enzyme VAA_03314 PF13378 Enolase C-terminal domain-like VAA_03315 PF00378 Enoyl-CoA hydratase/isomerase VAA_03316 PF12697 Alpha/beta hydrolase family VAA_03317 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_03317 PF16582 Middle domain of thiamine pyrophosphate VAA_03317 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_03318 PF00425 chorismate binding enzyme VAA_03319 PF00155 Aminotransferase class I and II VAA_03321 PF01966 HD domain VAA_03321 PF13286 Phosphohydrolase-associated domain VAA_03324 PF01343 Peptidase family S49 VAA_03324 PF08496 Peptidase family S49 N-terminal VAA_03325 PF00106 short chain dehydrogenase VAA_03326 PF01584 CheW-like domain VAA_03326 PF00072 Response regulator receiver domain VAA_03327 PF00480 ROK family VAA_03328 PF02887 Pyruvate kinase, alpha/beta domain VAA_03328 PF00224 Pyruvate kinase, barrel domain VAA_03329 PF01734 Patatin-like phospholipase VAA_03332 PF00209 Sodium:neurotransmitter symporter family VAA_03335 PF00367 phosphotransferase system, EIIB VAA_03335 PF02378 Phosphotransferase system, EIIC VAA_03336 PF01026 TatD related DNase VAA_03337 PF09115 DNA polymerase III, delta subunit, C terminal VAA_03338 PF02223 Thymidylate kinase VAA_03339 PF02618 YceG-like family VAA_03340 PF01063 Amino-transferase class IV VAA_03341 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA_03341 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA_03342 PF00550 Phosphopantetheine attachment site VAA_03344 PF00698 Acyl transferase domain VAA_03345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VAA_03345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VAA_03346 PF02504 Fatty acid synthesis protein VAA_03347 PF01783 Ribosomal L32p protein family VAA_03348 PF02620 Large ribosomal RNA subunit accumulation protein YceD VAA_03349 PF02545 Maf-like protein VAA_03350 PF00849 RNA pseudouridylate synthase VAA_03350 PF01479 S4 domain VAA_03351 PF00575 S1 RNA binding domain VAA_03351 PF10150 Ribonuclease E/G family VAA_03351 PF12111 Polyribonucleotide phosphorylase C terminal VAA_03354 PF00465 Iron-containing alcohol dehydrogenase VAA_03354 PF00171 Aldehyde dehydrogenase family VAA_03355 PF01914 MarC family integral membrane protein VAA_03356 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA_03356 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA_03357 PF03553 Na+/H+ antiporter family VAA_03359 PF04245 37-kD nucleoid-associated bacterial protein VAA_03360 PF07208 Protein of unknown function (DUF1414) VAA_03361 PF11893 Domain of unknown function (DUF3413) VAA_03361 PF00884 Sulfatase VAA_03362 PF00384 Molybdopterin oxidoreductase VAA_03363 PF02634 FdhD/NarQ family VAA_03366 PF01131 DNA topoisomerase VAA_03366 PF01751 Toprim domain VAA_03367 PF00462 Glutaredoxin VAA_03368 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VAA_03368 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VAA_03371 PF04333 MlaA lipoprotein VAA_03373 PF03918 Cytochrome C biogenesis protein VAA_03374 PF08534 Redoxin VAA_03375 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VAA_03375 PF01578 Cytochrome C assembly protein VAA_03376 PF03100 CcmE VAA_03378 PF01578 Cytochrome C assembly protein VAA_03379 PF03379 CcmB protein VAA_03380 PF00005 ABC transporter VAA_03382 PF01584 CheW-like domain VAA_03384 PF13614 AAA domain VAA_03385 PF00072 Response regulator receiver domain VAA_03385 PF01339 CheB methylesterase VAA_03386 PF07194 P2 response regulator binding domain VAA_03386 PF01627 Hpt domain VAA_03386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03386 PF02895 Signal transducing histidine kinase, homodimeric domain VAA_03386 PF01584 CheW-like domain VAA_03387 PF04344 Chemotaxis phosphatase, CheZ VAA_03388 PF00072 Response regulator receiver domain VAA_03389 PF04539 Sigma-70 region 3 VAA_03389 PF04545 Sigma-70, region 4 VAA_03389 PF04542 Sigma-70 region 2 VAA_03390 PF10609 NUBPL iron-transfer P-loop NTPase VAA_03391 PF00448 SRP54-type protein, GTPase domain VAA_03392 PF00771 FHIPEP family VAA_03393 PF00300 Histidine phosphatase superfamily (branch 1) VAA_03394 PF00675 Insulinase (Peptidase family M16) VAA_03394 PF05193 Peptidase M16 inactive domain VAA_03395 PF06185 YecM protein VAA_03396 PF00750 tRNA synthetases class I (R) VAA_03396 PF03485 Arginyl tRNA synthetase N terminal domain VAA_03396 PF05746 DALR anticodon binding domain VAA_03399 PF07670 Nucleoside recognition VAA_03399 PF02421 Ferrous iron transport protein B VAA_03399 PF07664 Ferrous iron transport protein B C terminus VAA_03400 PF04023 FeoA domain VAA_03402 PF12833 Helix-turn-helix domain VAA_03402 PF02311 AraC-like ligand binding domain VAA_03405 PF00005 ABC transporter VAA_03406 PF00950 ABC 3 transport family VAA_03407 PF00549 CoA-ligase VAA_03407 PF02629 CoA binding domain VAA_03408 PF08442 ATP-grasp domain VAA_03408 PF00549 CoA-ligase VAA_03409 PF02817 e3 binding domain VAA_03409 PF00364 Biotin-requiring enzyme VAA_03409 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VAA_03410 PF16078 2-oxoglutarate dehydrogenase N-terminus VAA_03410 PF00676 Dehydrogenase E1 component VAA_03410 PF16870 2-oxoglutarate dehydrogenase C-terminal VAA_03410 PF02779 Transketolase, pyrimidine binding domain VAA_03412 PF13085 2Fe-2S iron-sulfur cluster binding domain VAA_03413 PF02910 Fumarate reductase flavoprotein C-term VAA_03413 PF00890 FAD binding domain VAA_03414 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VAA_03415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VAA_03416 PF00285 Citrate synthase, C-terminal domain VAA_03418 PF01784 NIF3 (NGG1p interacting factor 3) VAA_03420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA_03420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA_03420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA_03420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA_03421 PF03925 SeqA protein C-terminal domain VAA_03421 PF17206 SeqA protein N-terminal domain VAA_03422 PF12697 Alpha/beta hydrolase family VAA_03424 PF00258 Flavodoxin VAA_03425 PF04172 LrgB-like family VAA_03426 PF03788 LrgA family VAA_03427 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03427 PF03466 LysR substrate binding domain VAA_03429 PF01475 Ferric uptake regulator family VAA_03430 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA_03430 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA_03431 PF11890 Domain of unknown function (DUF3410) VAA_03431 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_03431 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA_03432 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA_03432 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA_03433 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VAA_03433 PF01266 FAD dependent oxidoreductase VAA_03434 PF03358 NADPH-dependent FMN reductase VAA_03436 PF08891 YfcL protein VAA_03437 PF04315 Elongation factor P hydroxylase VAA_03438 PF03458 UPF0126 domain VAA_03439 PF01264 Chorismate synthase VAA_03441 PF05175 Methyltransferase small domain VAA_03442 PF01713 Smr domain VAA_03443 PF01312 FlhB HrpN YscU SpaS Family VAA_03444 PF01311 Bacterial export proteins, family 1 VAA_03445 PF01313 Bacterial export proteins, family 3 VAA_03446 PF00813 FliP family VAA_03447 PF04347 Flagellar biosynthesis protein, FliO VAA_03448 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VAA_03449 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VAA_03449 PF02154 Flagellar motor switch protein FliM VAA_03456 PF14842 FliG N-terminal domain VAA_03456 PF14841 FliG middle domain VAA_03456 PF01706 FliG C-terminal domain VAA_03458 PF01514 Secretory protein of YscJ/FliF family VAA_03458 PF08345 Flagellar M-ring protein C-terminal VAA_03459 PF02049 Flagellar hook-basal body complex protein FliE VAA_03460 PF00158 Sigma-54 interaction domain VAA_03460 PF00072 Response regulator receiver domain VAA_03460 PF02954 Bacterial regulatory protein, Fis family VAA_03461 PF00512 His Kinase A (phospho-acceptor) domain VAA_03461 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03462 PF02954 Bacterial regulatory protein, Fis family VAA_03462 PF00158 Sigma-54 interaction domain VAA_03462 PF00072 Response regulator receiver domain VAA_03463 PF02561 Flagellar protein FliS VAA_03465 PF07196 Flagellin hook IN motif VAA_03465 PF02465 Flagellar hook-associated protein 2 N-terminus VAA_03465 PF07195 Flagellar hook-associated protein 2 C-terminus VAA_03466 PF03646 FlaG protein VAA_03467 PF00669 Bacterial flagellin N-terminal helical region VAA_03467 PF07196 Flagellin hook IN motif VAA_03467 PF00700 Bacterial flagellin C-terminal helical region VAA_03469 PF07196 Flagellin hook IN motif VAA_03469 PF00700 Bacterial flagellin C-terminal helical region VAA_03469 PF00669 Bacterial flagellin N-terminal helical region VAA_03470 PF00669 Bacterial flagellin N-terminal helical region VAA_03470 PF00700 Bacterial flagellin C-terminal helical region VAA_03470 PF07196 Flagellin hook IN motif VAA_03472 PF04261 Dyp-type peroxidase family VAA_03473 PF11143 Protein of unknown function (DUF2919) VAA_03477 PF03960 ArsC family VAA_03478 PF01546 Peptidase family M20/M25/M40 VAA_03478 PF07687 Peptidase dimerisation domain VAA_03482 PF00701 Dihydrodipicolinate synthetase family VAA_03485 PF00578 AhpC/TSA family VAA_03486 PF02743 Cache domain VAA_03486 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03486 PF00672 HAMP domain VAA_03487 PF01594 AI-2E family transporter VAA_03490 PF01435 Peptidase family M48 VAA_03490 PF13181 Tetratricopeptide repeat VAA_03491 PF03960 ArsC family VAA_03492 PF03358 NADPH-dependent FMN reductase VAA_03495 PF00860 Permease family VAA_03496 PF04073 Aminoacyl-tRNA editing domain VAA_03497 PF00149 Calcineurin-like phosphoesterase VAA_03497 PF02872 5'-nucleotidase, C-terminal domain VAA_03498 PF00793 DAHP synthetase I family VAA_03499 PF13369 Transglutaminase-like superfamily VAA_03500 PF04247 Invasion gene expression up-regulator, SirB VAA_03501 PF13847 Methyltransferase domain VAA_03501 PF17827 PrmC N-terminal domain VAA_03502 PF00472 RF-1 domain VAA_03502 PF03462 PCRF domain VAA_03503 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VAA_03503 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VAA_03503 PF01488 Shikimate / quinate 5-dehydrogenase VAA_03504 PF03550 Outer membrane lipoprotein LolB VAA_03506 PF00288 GHMP kinases N terminal domain VAA_03506 PF08544 GHMP kinases C terminal VAA_03507 PF14572 Phosphoribosyl synthetase-associated domain VAA_03507 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VAA_03508 PF01195 Peptidyl-tRNA hydrolase VAA_03510 PF07196 Flagellin hook IN motif VAA_03510 PF00700 Bacterial flagellin C-terminal helical region VAA_03510 PF00669 Bacterial flagellin N-terminal helical region VAA_03511 PF07196 Flagellin hook IN motif VAA_03511 PF00669 Bacterial flagellin N-terminal helical region VAA_03511 PF00700 Bacterial flagellin C-terminal helical region VAA_03512 PF00669 Bacterial flagellin N-terminal helical region VAA_03513 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03513 PF07196 Flagellin hook IN motif VAA_03514 PF10135 Rod binding protein VAA_03514 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VAA_03515 PF02119 Flagellar P-ring protein VAA_03516 PF02107 Flagellar L-ring protein VAA_03517 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03517 PF00460 Flagella basal body rod protein VAA_03518 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03518 PF00460 Flagella basal body rod protein VAA_03520 PF07559 Flagellar basal body protein FlaE VAA_03520 PF00460 Flagella basal body rod protein VAA_03520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03521 PF13860 FlgD Ig-like domain VAA_03521 PF03963 Flagellar hook capping protein - N-terminal region VAA_03521 PF13861 FlgD Tudor-like domain VAA_03522 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03522 PF00460 Flagella basal body rod protein VAA_03523 PF00460 Flagella basal body rod protein VAA_03524 PF01739 CheR methyltransferase, SAM binding domain VAA_03524 PF03705 CheR methyltransferase, all-alpha domain VAA_03525 PF01584 CheW-like domain VAA_03525 PF00072 Response regulator receiver domain VAA_03527 PF04316 Anti-sigma-28 factor, FlgM VAA_03534 PF01389 OmpA-like transmembrane domain VAA_03534 PF00691 OmpA family VAA_03535 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA_03537 PF00403 Heavy-metal-associated domain VAA_03539 PF03173 Putative carbohydrate binding domain VAA_03539 PF02838 Glycosyl hydrolase family 20, domain 2 VAA_03539 PF00728 Glycosyl hydrolase family 20, catalytic domain VAA_03539 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VAA_03541 PF00849 RNA pseudouridylate synthase VAA_03541 PF01479 S4 domain VAA_03543 PF02769 AIR synthase related protein, C-terminal domain VAA_03543 PF00586 AIR synthase related protein, N-terminal domain VAA_03544 PF00551 Formyl transferase VAA_03546 PF13230 Glutamine amidotransferases class-II VAA_03547 PF13580 SIS domain VAA_03548 PF09317 Domain of unknown function (DUF1974) VAA_03548 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VAA_03548 PF02770 Acyl-CoA dehydrogenase, middle domain VAA_03548 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VAA_03550 PF00929 Exonuclease VAA_03551 PF00075 RNase H VAA_03552 PF08241 Methyltransferase domain VAA_03553 PF00753 Metallo-beta-lactamase superfamily VAA_03553 PF16123 Hydroxyacylglutathione hydrolase C-terminus VAA_03554 PF01476 LysM domain VAA_03554 PF01464 Transglycosylase SLT domain VAA_03556 PF03372 Endonuclease/Exonuclease/phosphatase family VAA_03557 PF00543 Nitrogen regulatory protein P-II VAA_03558 PF00034 Cytochrome c VAA_03559 PF11734 TilS substrate C-terminal domain VAA_03559 PF09179 TilS substrate binding domain VAA_03559 PF01171 PP-loop family VAA_03561 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VAA_03562 PF07733 Bacterial DNA polymerase III alpha NTPase domain VAA_03562 PF14579 Helix-hairpin-helix motif VAA_03562 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VAA_03562 PF02811 PHP domain VAA_03562 PF01336 OB-fold nucleic acid binding domain VAA_03563 PF01351 Ribonuclease HII VAA_03564 PF02684 Lipid-A-disaccharide synthetase VAA_03565 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_03565 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VAA_03566 PF07977 FabA-like domain VAA_03567 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VAA_03567 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_03568 PF03938 Outer membrane protein (OmpH-like) VAA_03569 PF01103 Surface antigen VAA_03569 PF07244 Surface antigen variable number repeat VAA_03570 PF17820 PDZ domain VAA_03570 PF02163 Peptidase family M50 VAA_03571 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VAA_03571 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VAA_03571 PF13288 DXP reductoisomerase C-terminal domain VAA_03573 PF01255 Putative undecaprenyl diphosphate synthase VAA_03574 PF01765 Ribosome recycling factor VAA_03575 PF00696 Amino acid kinase family VAA_03576 PF00889 Elongation factor TS VAA_03577 PF00318 Ribosomal protein S2 VAA_03578 PF00557 Metallopeptidase family M24 VAA_03580 PF11944 Protein of unknown function (DUF3461) VAA_03582 PF04608 Phosphatidylglycerophosphatase A VAA_03583 PF00586 AIR synthase related protein, N-terminal domain VAA_03583 PF02769 AIR synthase related protein, C-terminal domain VAA_03586 PF00885 6,7-dimethyl-8-ribityllumazine synthase VAA_03588 PF00677 Lumazine binding domain VAA_03589 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_03589 PF01872 RibD C-terminal domain VAA_03590 PF03477 ATP cone domain VAA_03592 PF00171 Aldehyde dehydrogenase family VAA_03593 PF00696 Amino acid kinase family VAA_03593 PF01472 PUA domain VAA_03594 PF07417 Sigma factor-binding transcriptional regulator Crl VAA_03597 PF00860 Permease family VAA_03599 PF01546 Peptidase family M20/M25/M40 VAA_03599 PF07687 Peptidase dimerisation domain VAA_03600 PF08443 RimK-like ATP-grasp domain VAA_03600 PF18030 RimK PreATP-grasp domain VAA_03601 PF18030 RimK PreATP-grasp domain VAA_03601 PF08443 RimK-like ATP-grasp domain VAA_03603 PF00209 Sodium:neurotransmitter symporter family VAA_03605 PF00360 Phytochrome region VAA_03605 PF00563 EAL domain VAA_03605 PF01590 GAF domain VAA_03605 PF00990 Diguanylate cyclase, GGDEF domain VAA_03607 PF00817 impB/mucB/samB family VAA_03607 PF11798 IMS family HHH motif VAA_03607 PF11799 impB/mucB/samB family C-terminal domain VAA_03609 PF02424 ApbE family VAA_03611 PF00970 Oxidoreductase FAD-binding domain VAA_03611 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_03611 PF00175 Oxidoreductase NAD-binding domain VAA_03612 PF02508 Rnf-Nqr subunit, membrane protein VAA_03613 PF02508 Rnf-Nqr subunit, membrane protein VAA_03614 PF04205 FMN-binding domain VAA_03615 PF03116 NQR2, RnfD, RnfE family VAA_03616 PF11973 NQRA C-terminal domain VAA_03616 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VAA_03617 PF01722 BolA-like protein VAA_03618 PF05175 Methyltransferase small domain VAA_03620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VAA_03621 PF07690 Major Facilitator Superfamily VAA_03623 PF04542 Sigma-70 region 2 VAA_03623 PF04545 Sigma-70, region 4 VAA_03625 PF03502 Nucleoside-specific channel-forming protein, Tsx VAA_03626 PF02558 Ketopantoate reductase PanE/ApbA VAA_03626 PF08546 Ketopantoate reductase PanE/ApbA C terminal VAA_03627 PF01965 DJ-1/PfpI family VAA_03628 PF00266 Aminotransferase class-V VAA_03629 PF02657 Fe-S metabolism associated domain VAA_03630 PF00899 ThiF family VAA_03631 PF06725 3D domain VAA_03631 PF03562 MltA specific insert domain VAA_03633 PF00696 Amino acid kinase family VAA_03633 PF00583 Acetyltransferase (GNAT) family VAA_03635 PF13538 UvrD-like helicase C-terminal domain VAA_03636 PF13361 UvrD-like helicase C-terminal domain VAA_03636 PF00580 UvrD/REP helicase N-terminal domain VAA_03636 PF12705 PD-(D/E)XK nuclease superfamily VAA_03637 PF17946 RecC C-terminal domain VAA_03640 PF07130 YebG protein VAA_03641 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VAA_03641 PF14602 Hexapeptide repeat of succinyl-transferase VAA_03643 PF00583 Acetyltransferase (GNAT) family VAA_03646 PF01544 CorA-like Mg2+ transporter protein VAA_03648 PF00356 Bacterial regulatory proteins, lacI family VAA_03650 PF10509 Galactokinase galactose-binding signature VAA_03650 PF08544 GHMP kinases C terminal VAA_03650 PF00288 GHMP kinases N terminal domain VAA_03651 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VAA_03651 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VAA_03652 PF16363 GDP-mannose 4,6 dehydratase VAA_03655 PF01554 MatE VAA_03658 PF11849 Domain of unknown function (DUF3369) VAA_03659 PF00501 AMP-binding enzyme VAA_03660 PF09905 DNA-binding protein VF530 VAA_03662 PF03144 Elongation factor Tu domain 2 VAA_03662 PF00009 Elongation factor Tu GTP binding domain VAA_03662 PF03764 Elongation factor G, domain IV VAA_03662 PF14492 Elongation Factor G, domain II VAA_03662 PF00679 Elongation factor G C-terminus VAA_03663 PF18073 Rubredoxin metal binding domain VAA_03666 PF18429 Domain of unknown function (DUF5609) VAA_03668 PF01048 Phosphorylase superfamily VAA_03669 PF01676 Metalloenzyme superfamily VAA_03670 PF00591 Glycosyl transferase family, a/b domain VAA_03670 PF02885 Glycosyl transferase family, helical bundle domain VAA_03670 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VAA_03671 PF01791 DeoC/LacD family aldolase VAA_03672 PF07670 Nucleoside recognition VAA_03672 PF07662 Na+ dependent nucleoside transporter C-terminus VAA_03672 PF01773 Na+ dependent nucleoside transporter N-terminus VAA_03673 PF01026 TatD related DNase VAA_03676 PF01235 Sodium:alanine symporter family VAA_03679 PF03167 Uracil DNA glycosylase superfamily VAA_03680 PF01261 Xylose isomerase-like TIM barrel VAA_03681 PF01228 Glycine radical VAA_03682 PF00291 Pyridoxal-phosphate dependent enzyme VAA_03682 PF14821 Threonine synthase N terminus VAA_03683 PF00288 GHMP kinases N terminal domain VAA_03683 PF08544 GHMP kinases C terminal VAA_03684 PF00696 Amino acid kinase family VAA_03684 PF01842 ACT domain VAA_03684 PF13840 ACT domain VAA_03684 PF00742 Homoserine dehydrogenase VAA_03684 PF03447 Homoserine dehydrogenase, NAD binding domain VAA_03686 PF03737 Aldolase/RraA VAA_03687 PF00072 Response regulator receiver domain VAA_03687 PF00486 Transcriptional regulatory protein, C terminal VAA_03689 PF00072 Response regulator receiver domain VAA_03689 PF00512 His Kinase A (phospho-acceptor) domain VAA_03689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03689 PF01627 Hpt domain VAA_03689 PF18415 Histidine kinase receptor ArcB trans-membrane domain VAA_03689 PF00989 PAS fold VAA_03690 PF16199 Radical_SAM C-terminal domain VAA_03690 PF04055 Radical SAM superfamily VAA_03691 PF01645 Conserved region in glutamate synthase VAA_03691 PF04898 Glutamate synthase central domain VAA_03691 PF01493 GXGXG motif VAA_03691 PF00310 Glutamine amidotransferases class-II VAA_03692 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VAA_03692 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_03693 PF04898 Glutamate synthase central domain VAA_03693 PF01645 Conserved region in glutamate synthase VAA_03693 PF01493 GXGXG motif VAA_03693 PF00310 Glutamine amidotransferases class-II VAA_03694 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_03694 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VAA_03699 PF01497 Periplasmic binding protein VAA_03700 PF03458 UPF0126 domain VAA_03701 PF01925 Sulfite exporter TauE/SafE VAA_03703 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VAA_03703 PF02142 MGS-like domain VAA_03703 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VAA_03704 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VAA_03704 PF00117 Glutamine amidotransferase class-I VAA_03707 PF00293 NUDIX domain VAA_03708 PF02810 SEC-C motif VAA_03708 PF07517 SecA DEAD-like domain VAA_03708 PF01043 SecA preprotein cross-linking domain VAA_03708 PF07516 SecA Wing and Scaffold domain VAA_03710 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VAA_03711 PF12327 FtsZ family, C-terminal domain VAA_03711 PF00091 Tubulin/FtsZ family, GTPase domain VAA_03712 PF02491 SHS2 domain inserted in FTSA VAA_03713 PF03799 Cell division protein FtsQ VAA_03713 PF08478 POTRA domain, FtsQ-type VAA_03715 PF08245 Mur ligase middle domain VAA_03715 PF02875 Mur ligase family, glutamate ligase domain VAA_03715 PF01225 Mur ligase family, catalytic domain VAA_03716 PF04101 Glycosyltransferase family 28 C-terminal domain VAA_03716 PF03033 Glycosyltransferase family 28 N-terminal domain VAA_03717 PF01098 Cell cycle protein VAA_03718 PF02875 Mur ligase family, glutamate ligase domain VAA_03718 PF08245 Mur ligase middle domain VAA_03719 PF00953 Glycosyl transferase family 4 VAA_03719 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VAA_03720 PF01225 Mur ligase family, catalytic domain VAA_03720 PF08245 Mur ligase middle domain VAA_03720 PF02875 Mur ligase family, glutamate ligase domain VAA_03721 PF08245 Mur ligase middle domain VAA_03721 PF02875 Mur ligase family, glutamate ligase domain VAA_03721 PF01225 Mur ligase family, catalytic domain VAA_03722 PF00905 Penicillin binding protein transpeptidase domain VAA_03722 PF03717 Penicillin-binding Protein dimerisation domain VAA_03723 PF04999 Cell division protein FtsL VAA_03724 PF01795 MraW methylase family VAA_03726 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA_03728 PF04348 LppC putative lipoprotein VAA_03729 PF02021 Uncharacterised protein family UPF0102 VAA_03730 PF13580 SIS domain VAA_03731 PF04972 BON domain VAA_03732 PF04386 Stringent starvation protein B VAA_03733 PF02798 Glutathione S-transferase, N-terminal domain VAA_03733 PF00043 Glutathione S-transferase, C-terminal domain VAA_03734 PF02167 Cytochrome C1 family VAA_03735 PF00033 Cytochrome b/b6/petB VAA_03735 PF00032 Cytochrome b(C-terminal)/b6/petD VAA_03736 PF00355 Rieske [2Fe-2S] domain VAA_03736 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VAA_03737 PF00380 Ribosomal protein S9/S16 VAA_03738 PF00572 Ribosomal protein L13 VAA_03739 PF03969 AFG1-like ATPase VAA_03740 PF06295 Protein of unknown function (DUF1043) VAA_03741 PF00595 PDZ domain VAA_03742 PF13180 PDZ domain VAA_03743 PF03989 DNA gyrase C-terminal domain, beta-propeller VAA_03743 PF00521 DNA gyrase/topoisomerase IV, subunit A VAA_03744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03744 PF00986 DNA gyrase B subunit, carboxyl terminus VAA_03744 PF00204 DNA gyrase B VAA_03744 PF01751 Toprim domain VAA_03745 PF05728 Uncharacterised protein family (UPF0227) VAA_03746 PF00149 Calcineurin-like phosphoesterase VAA_03747 PF06853 Protein of unknown function (DUF1249) VAA_03748 PF00293 NUDIX domain VAA_03750 PF02321 Outer membrane efflux protein VAA_03751 PF00294 pfkB family carbohydrate kinase VAA_03751 PF01467 Cytidylyltransferase-like VAA_03752 PF08335 GlnD PII-uridylyltransferase VAA_03752 PF03710 Glutamate-ammonia ligase adenylyltransferase VAA_03753 PF08335 GlnD PII-uridylyltransferase VAA_03753 PF03710 Glutamate-ammonia ligase adenylyltransferase VAA_03754 PF00672 HAMP domain VAA_03754 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03756 PF01928 CYTH domain VAA_03758 PF01865 Protein of unknown function DUF47 VAA_03759 PF01384 Phosphate transporter family VAA_03760 PF08239 Bacterial SH3 domain VAA_03762 PF01471 Putative peptidoglycan binding domain VAA_03762 PF13401 AAA domain VAA_03763 PF01966 HD domain VAA_03763 PF01743 Poly A polymerase head domain VAA_03763 PF12627 Probable RNA and SrmB- binding site of polymerase A VAA_03764 PF00113 Enolase, C-terminal TIM barrel domain VAA_03764 PF03952 Enolase, N-terminal domain VAA_03765 PF06418 CTP synthase N-terminus VAA_03765 PF00117 Glutamine amidotransferase class-I VAA_03766 PF03819 MazG nucleotide pyrophosphohydrolase domain VAA_03767 PF13291 ACT domain VAA_03767 PF04607 Region found in RelA / SpoT proteins VAA_03767 PF02824 TGS domain VAA_03768 PF05958 tRNA (Uracil-5-)-methyltransferase VAA_03768 PF01938 TRAM domain VAA_03770 PF00512 His Kinase A (phospho-acceptor) domain VAA_03770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03770 PF00072 Response regulator receiver domain VAA_03770 PF00672 HAMP domain VAA_03770 PF01627 Hpt domain VAA_03770 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VAA_03771 PF01648 4'-phosphopantetheinyl transferase superfamily VAA_03772 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VAA_03774 PF01926 50S ribosome-binding GTPase VAA_03774 PF07650 KH domain VAA_03776 PF10502 Signal peptidase, peptidase S26 VAA_03777 PF00009 Elongation factor Tu GTP binding domain VAA_03777 PF06421 GTP-binding protein LepA C-terminus VAA_03777 PF00679 Elongation factor G C-terminus VAA_03777 PF03144 Elongation factor Tu domain 2 VAA_03779 PF03888 MucB/RseB N-terminal domain VAA_03779 PF17188 MucB/RseB C-terminal domain VAA_03780 PF03873 Anti sigma-E protein RseA, C-terminal domain VAA_03780 PF03872 Anti sigma-E protein RseA, N-terminal domain VAA_03781 PF04542 Sigma-70 region 2 VAA_03781 PF08281 Sigma-70, region 4 VAA_03782 PF00890 FAD binding domain VAA_03782 PF02910 Fumarate reductase flavoprotein C-term VAA_03784 PF03937 Flavinator of succinate dehydrogenase VAA_03788 PF01494 FAD binding domain VAA_03789 PF01494 FAD binding domain VAA_03791 PF05164 Cell division protein ZapA VAA_03792 PF01812 5-formyltetrahydrofolate cyclo-ligase family VAA_03793 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VAA_03794 PF01842 ACT domain VAA_03794 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_03794 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA_03795 PF10369 Small subunit of acetolactate synthase VAA_03796 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_03796 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_03796 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_03797 PF00501 AMP-binding enzyme VAA_03798 PF03466 LysR substrate binding domain VAA_03798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03800 PF01569 PAP2 superfamily VAA_03801 PF00682 HMGL-like VAA_03801 PF08502 LeuA allosteric (dimerisation) domain VAA_03802 PF00180 Isocitrate/isopropylmalate dehydrogenase VAA_03803 PF00330 Aconitase family (aconitate hydratase) VAA_03804 PF00694 Aconitase C-terminal domain VAA_03857 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VAA_03857 PF00925 GTP cyclohydrolase II VAA_03885 PF05045 Rhamnan synthesis protein F VAA_03891 PF13007 Transposase C of IS166 homeodomain VAA_03891 PF13817 IS66 C-terminal element VAA_03891 PF03050 Transposase IS66 family VAA_03891 PF13005 zinc-finger binding domain of transposase IS66 VAA_03903 PF13737 Transposase DDE domain VAA_03904 PF04986 Putative transposase VAA_03904 PF14319 Transposase zinc-binding domain VAA_03906 PF13737 Transposase DDE domain VAA_03908 PF03480 Bacterial extracellular solute-binding protein, family 7 VAA_03912 PF04986 Putative transposase VAA_03912 PF14319 Transposase zinc-binding domain VAA_03919 PF13005 zinc-finger binding domain of transposase IS66 VAA_03919 PF13007 Transposase C of IS166 homeodomain VAA_03919 PF03050 Transposase IS66 family VAA_03919 PF13817 IS66 C-terminal element VAA_03922 PF06923 Glucitol operon activator protein (GutM) VAA_03931 PF04986 Putative transposase VAA_03931 PF14319 Transposase zinc-binding domain VAA_03934 PF04986 Putative transposase VAA_03934 PF14319 Transposase zinc-binding domain VAA_03936 PF14319 Transposase zinc-binding domain VAA_03936 PF04986 Putative transposase VAA_03938 PF00665 Integrase core domain VAA_03941 PF13276 HTH-like domain VAA_03941 PF00665 Integrase core domain VAA_03941 PF13333 Integrase core domain VAA_03946 PF13005 zinc-finger binding domain of transposase IS66 VAA_03946 PF13817 IS66 C-terminal element VAA_03946 PF13007 Transposase C of IS166 homeodomain VAA_03946 PF03050 Transposase IS66 family VAA_03949 PF13817 IS66 C-terminal element VAA_03949 PF03050 Transposase IS66 family VAA_03949 PF13005 zinc-finger binding domain of transposase IS66 VAA_03949 PF13007 Transposase C of IS166 homeodomain VAA_03956 PF13737 Transposase DDE domain VAA_03964 PF13737 Transposase DDE domain VAA_03967 PF03050 Transposase IS66 family VAA_03967 PF13817 IS66 C-terminal element VAA_03967 PF13005 zinc-finger binding domain of transposase IS66 VAA_03967 PF13007 Transposase C of IS166 homeodomain VAA_03969 PF13737 Transposase DDE domain VAA_03971 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_03971 PF02874 ATP synthase alpha/beta family, beta-barrel domain VAA_03982 PF02780 Transketolase, C-terminal domain VAA_03982 PF02779 Transketolase, pyrimidine binding domain VAA_03982 PF00456 Transketolase, thiamine diphosphate binding domain VAA_03991 PF13737 Transposase DDE domain VAA_03992 PF01212 Beta-eliminating lyase VAA_04002 PF13737 Transposase DDE domain VAA_04013 PF04986 Putative transposase VAA_04013 PF14319 Transposase zinc-binding domain VAA_04030 PF01527 Transposase VAA_04033 PF13005 zinc-finger binding domain of transposase IS66 VAA_04033 PF03050 Transposase IS66 family VAA_04033 PF13817 IS66 C-terminal element VAA_04033 PF13007 Transposase C of IS166 homeodomain VAA_04035 PF03462 PCRF domain VAA_04035 PF00472 RF-1 domain VAA_04042 PF14319 Transposase zinc-binding domain VAA_04042 PF04986 Putative transposase VAA_04051 PF13005 zinc-finger binding domain of transposase IS66 VAA_04051 PF13007 Transposase C of IS166 homeodomain VAA_04051 PF13817 IS66 C-terminal element VAA_04051 PF03050 Transposase IS66 family VAA_04058 PF13737 Transposase DDE domain VAA_04059 PF13737 Transposase DDE domain VAA_04060 PF13005 zinc-finger binding domain of transposase IS66 VAA_04060 PF13007 Transposase C of IS166 homeodomain VAA_04060 PF03050 Transposase IS66 family VAA_04060 PF13817 IS66 C-terminal element VAA_04065 PF13817 IS66 C-terminal element VAA_04065 PF13005 zinc-finger binding domain of transposase IS66 VAA_04065 PF13007 Transposase C of IS166 homeodomain VAA_04065 PF03050 Transposase IS66 family VAA_04068 PF07411 Domain of unknown function (DUF1508) VAA_04071 PF13005 zinc-finger binding domain of transposase IS66 VAA_04071 PF03050 Transposase IS66 family VAA_04071 PF13817 IS66 C-terminal element VAA_04071 PF13007 Transposase C of IS166 homeodomain VAA_04075 PF02631 RecX family VAA_04081 PF13737 Transposase DDE domain VAA_04240 PF13737 Transposase DDE domain VAA_04257 PF13007 Transposase C of IS166 homeodomain VAA_04257 PF13005 zinc-finger binding domain of transposase IS66 VAA_04257 PF13817 IS66 C-terminal element VAA_04257 PF03050 Transposase IS66 family VAA_04277 PF03143 Elongation factor Tu C-terminal domain VAA_04277 PF03144 Elongation factor Tu domain 2 VAA_04277 PF00009 Elongation factor Tu GTP binding domain VAA_04285 PF03701 Uncharacterised protein family (UPF0181) VAA_04288 PF00486 Transcriptional regulatory protein, C terminal VAA_04288 PF00072 Response regulator receiver domain VAA_04290 PF02233 NAD(P) transhydrogenase beta subunit VAA_04291 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VAA_04291 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VAA_04291 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VAA_04294 PF00990 Diguanylate cyclase, GGDEF domain VAA_04295 PF00313 'Cold-shock' DNA-binding domain VAA_04296 PF17200 Single Cache domain 2 VAA_04296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_04296 PF00672 HAMP domain VAA_04300 PF02798 Glutathione S-transferase, N-terminal domain VAA_04300 PF00043 Glutathione S-transferase, C-terminal domain VAA_04303 PF03479 Plants and Prokaryotes Conserved (PCC) domain VAA_04303 PF12804 MobA-like NTP transferase domain VAA_04303 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_04304 PF12848 ABC transporter VAA_04304 PF00005 ABC transporter VAA_04305 PF12793 Sugar transport-related sRNA regulator N-term VAA_04305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_04307 PF03061 Thioesterase superfamily VAA_04309 PF03831 PhnA domain VAA_04309 PF08274 PhnA Zinc-Ribbon VAA_04312 PF00356 Bacterial regulatory proteins, lacI family VAA_04313 PF00294 pfkB family carbohydrate kinase VAA_04314 PF13407 Periplasmic binding protein domain VAA_04315 PF02653 Branched-chain amino acid transport system / permease component VAA_04316 PF00005 ABC transporter VAA_04317 PF05025 RbsD / FucU transport protein family VAA_04320 PF13005 zinc-finger binding domain of transposase IS66 VAA_04320 PF13007 Transposase C of IS166 homeodomain VAA_04320 PF13817 IS66 C-terminal element VAA_04320 PF03050 Transposase IS66 family VAA_04322 PF00849 RNA pseudouridylate synthase VAA_04322 PF01479 S4 domain VAA_04454 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_04454 PF18269 T3SS EscN ATPase C-terminal domain VAA_0493 PF03466 LysR substrate binding domain VAA_0493 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_0520 PF02082 Transcriptional regulator VAA_0986 PF03741 Integral membrane protein TerC family VAA_1440 PF00672 HAMP domain VAA_1440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_1482 PF00171 Aldehyde dehydrogenase family VAA_1488 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VAA_1806 PF01068 ATP dependent DNA ligase domain VAA_1806 PF14743 DNA ligase OB-like domain VAA_1856 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA_1856 PF13654 AAA domain VAA_1858 PF04957 Ribosome modulation factor VAA_3129 PF04191 Phospholipid methyltransferase VAA_3150 PF02445 Quinolinate synthetase A protein VAA_3171 PF02810 SEC-C motif VAA_3196 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VAA_3196 PF12241 Trans-2-enoyl-CoA reductase catalytic region VAA_3196 PF07055 Enoyl reductase FAD binding domain