VAA_00002 PF00072 Response regulator receiver domain VAA_00002 PF00196 Bacterial regulatory proteins, luxR family VAA_00004 PF04245 VAA_00004 VAA_00007 PF05840 VAA_00007 VAA_00008 PF00805 Pentapeptide repeats (8 copies) VAA_00010 PF05016 Plasmid stabilisation system protein VAA_00011 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VAA_00014 PF01527 Transposase VAA_00015 PF00665 Integrase core domain VAA_00015 PF13276 VAA_00015 VAA_00021 PF13489 Methyltransferase domain VAA_00027 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA_00030 PF04221 RelB antitoxin VAA_00031 PF05016 Plasmid stabilisation system protein VAA_00035 PF01527 Transposase VAA_00036 PF13476 AAA domain VAA_00039 PF03692 VAA_00039 VAA_00041 PF06042 Bacterial protein of unknown function (DUF925) VAA_00047 PF00485 Phosphoribulokinase / Uridine kinase family VAA_00048 PF02237 Biotin protein ligase C terminal domain VAA_00048 PF03099 Biotin/lipoate A/B protein ligase family VAA_00048 PF08279 HTH domain VAA_00049 PF01565 FAD binding domain VAA_00049 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VAA_00050 PF13508 Acetyltransferase (GNAT) domain VAA_00051 PF13091 PLD-like domain VAA_00058 PF02566 OsmC-like protein VAA_00064 PF11730 VAA_00064 VAA_00068 PF13673 Acetyltransferase (GNAT) domain VAA_00069 PF01966 HD domain VAA_00070 PF13286 Phosphohydrolase-associated domain VAA_00072 PF11665 VAA_00072 VAA_00081 PF03695 Uncharacterised protein family (UPF0149) VAA_00082 PF00072 Response regulator receiver domain VAA_00082 PF00512 His Kinase A (phospho-acceptor) domain VAA_00082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00082 PF02743 Cache domain VAA_00083 PF06610 VAA_00083 VAA_00084 PF00589 Phage integrase family VAA_00084 PF13356 Domain of unknown function (DUF4102) VAA_00089 PF08681 Protein of unknown function (DUF1778) VAA_00090 PF13673 Acetyltransferase (GNAT) domain VAA_00093 PF00076 RNA recognition motif VAA_00094 PF11826 VAA_00094 VAA_00097 PF02195 ParB-like nuclease domain VAA_00100 PF13302 Acetyltransferase (GNAT) domain VAA_00103 PF08681 Protein of unknown function (DUF1778) VAA_00104 PF13508 Acetyltransferase (GNAT) domain VAA_00113 PF08331 VAA_00113 VAA_00113 PF13484 VAA_00113 VAA_00114 PF02367 Uncharacterised P-loop hydrolase UPF0079 VAA_00115 PF01476 LysM domain VAA_00115 PF01520 N-acetylmuramoyl-L-alanine amidase VAA_00115 PF11741 AMIN domain VAA_00116 PF01119 DNA mismatch repair protein, C-terminal domain VAA_00116 PF08676 MutL C terminal dimerisation domain VAA_00116 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00117 PF01715 IPP transferase VAA_00118 PF17209 VAA_00118 VAA_00119 PF01926 50S ribosome-binding GTPase VAA_00119 PF13167 VAA_00119 VAA_00119 PF16360 VAA_00119 VAA_00120 PF01145 SPFH domain / Band 7 family VAA_00120 PF12221 VAA_00120 VAA_00121 PF01145 SPFH domain / Band 7 family VAA_00122 PF09838 VAA_00122 VAA_00123 PF04102 SlyX VAA_00124 PF00400 WD domain, G-beta repeat VAA_00125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_00125 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA_00126 PF08348 VAA_00126 VAA_00126 PF13309 VAA_00126 VAA_00127 PF02635 DsrE/DsrF-like family VAA_00128 PF02635 DsrE/DsrF-like family VAA_00129 PF04077 DsrH like protein VAA_00130 PF00164 Ribosomal protein S12/S23 VAA_00131 PF00177 Ribosomal protein S7p/S5e VAA_00132 PF00009 Elongation factor Tu GTP binding domain VAA_00132 PF00679 Elongation factor G C-terminus VAA_00132 PF03144 Elongation factor Tu domain 2 VAA_00132 PF03764 Elongation factor G, domain IV VAA_00132 PF14492 Elongation Factor G, domain II VAA_00133 PF08878 VAA_00133 VAA_00134 PF00270 DEAD/DEAH box helicase VAA_00134 PF00271 Helicase conserved C-terminal domain VAA_00139 PF01381 Helix-turn-helix VAA_00141 PF07804 HipA-like C-terminal domain VAA_00141 PF13657 HipA N-terminal domain VAA_00145 PF07819 PGAP1-like protein VAA_00150 PF00149 Calcineurin-like phosphoesterase VAA_00150 PF02872 5'-nucleotidase, C-terminal domain VAA_00152 PF06945 VAA_00152 VAA_00153 PF03724 META domain VAA_00154 PF13416 Bacterial extracellular solute-binding protein VAA_00156 PF00005 ABC transporter VAA_00157 PF01066 CDP-alcohol phosphatidyltransferase VAA_00169 PF01636 Phosphotransferase enzyme family VAA_00173 PF02368 Bacterial Ig-like domain (group 2) VAA_00175 PF01380 SIS domain VAA_00175 PF13522 Glutamine amidotransferase domain VAA_00176 PF00455 VAA_00176 VAA_00176 PF08220 DeoR-like helix-turn-helix domain VAA_00177 PF00224 Pyruvate kinase, barrel domain VAA_00179 PF00990 GGDEF domain VAA_00179 PF13426 PAS domain VAA_00180 PF04402 Protein of unknown function (DUF541) VAA_00181 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00181 PF03466 LysR substrate binding domain VAA_00182 PF01810 VAA_00182 VAA_00183 PF00924 Mechanosensitive ion channel VAA_00183 PF05552 Conserved TM helix VAA_00184 PF01116 Fructose-bisphosphate aldolase class-II VAA_00185 PF00162 Phosphoglycerate kinase VAA_00186 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_00186 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA_00188 PF00593 TonB dependent receptor VAA_00188 PF07715 TonB-dependent Receptor Plug Domain VAA_00189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00189 PF03466 LysR substrate binding domain VAA_00190 PF02384 N-6 DNA Methylase VAA_00190 PF12161 HsdM N-terminal domain VAA_00193 PF04927 VAA_00193 VAA_00196 PF01555 DNA methylase VAA_00197 PF07751 VAA_00197 VAA_00198 PF00271 Helicase conserved C-terminal domain VAA_00198 PF04851 Type III restriction enzyme, res subunit VAA_00198 PF08463 VAA_00198 VAA_00198 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VAA_00200 PF12728 Helix-turn-helix domain VAA_00201 PF01396 VAA_00201 VAA_00201 PF04471 Restriction endonuclease VAA_00203 PF02537 VAA_00203 VAA_00204 PF01964 ThiC family VAA_00204 PF13667 ThiC-associated domain VAA_00205 PF02581 Thiamine monophosphate synthase/TENI VAA_00206 PF00899 ThiF family VAA_00207 PF02597 ThiS family VAA_00208 PF05690 Thiazole biosynthesis protein ThiG VAA_00209 PF04055 Radical SAM superfamily VAA_00209 PF06968 Biotin and Thiamin Synthesis associated domain VAA_00210 PF00557 Metallopeptidase family M24 VAA_00210 PF01321 Creatinase/Prolidase N-terminal domain VAA_00210 PF16188 VAA_00210 VAA_00210 PF16189 VAA_00210 VAA_00211 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00211 PF03466 LysR substrate binding domain VAA_00212 PF07690 Major Facilitator Superfamily VAA_00214 PF13302 Acetyltransferase (GNAT) domain VAA_00215 PF08212 Lipocalin-like domain VAA_00223 PF06945 VAA_00223 VAA_00224 PF09016 Pas factor saposin fold VAA_00226 PF06042 Bacterial protein of unknown function (DUF925) VAA_00228 PF07653 Variant SH3 domain VAA_00232 PF00882 Zinc dependent phospholipase C VAA_00237 PF11686 VAA_00237 VAA_00238 PF01709 Transcriptional regulator VAA_00239 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VAA_00239 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VAA_00240 PF03222 Tryptophan/tyrosine permease family VAA_00242 PF05791 Bacillus haemolytic enterotoxin (HBL) VAA_00247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00247 PF03466 LysR substrate binding domain VAA_00248 PF13460 NADH(P)-binding VAA_00249 PF01925 VAA_00249 VAA_00250 PF03733 VAA_00250 VAA_00253 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VAA_00253 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VAA_00254 PF06029 AlkA N-terminal domain VAA_00256 PF00009 Elongation factor Tu GTP binding domain VAA_00256 PF03143 Elongation factor Tu C-terminal domain VAA_00256 PF03144 Elongation factor Tu domain 2 VAA_00257 PF01250 Ribosomal protein S6 VAA_00258 PF00436 Single-strand binding protein family VAA_00259 PF01084 Ribosomal protein S18 VAA_00260 PF01281 Ribosomal protein L9, N-terminal domain VAA_00260 PF03948 Ribosomal protein L9, C-terminal domain VAA_00261 PF04338 Protein of unknown function, DUF481 VAA_00262 PF00772 DnaB-like helicase N terminal domain VAA_00262 PF03796 DnaB-like helicase C terminal domain VAA_00263 PF00842 Alanine racemase, C-terminal domain VAA_00263 PF01168 Alanine racemase, N-terminal domain VAA_00264 PF00342 Phosphoglucose isomerase VAA_00265 PF13690 Chemotaxis phosphatase CheX VAA_00266 PF01475 Ferric uptake regulator family VAA_00267 PF01207 Dihydrouridine synthase (Dus) VAA_00268 PF09583 VAA_00268 VAA_00269 PF13505 Outer membrane protein beta-barrel domain VAA_00271 PF00175 Oxidoreductase NAD-binding domain VAA_00271 PF00258 Flavodoxin VAA_00271 PF00667 FAD binding domain VAA_00272 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VAA_00272 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VAA_00273 PF01507 Phosphoadenosine phosphosulfate reductase family VAA_00275 PF00589 Phage integrase family VAA_00275 PF13356 Domain of unknown function (DUF4102) VAA_00276 PF00149 Calcineurin-like phosphoesterase VAA_00278 PF01695 IstB-like ATP binding protein VAA_00278 PF08483 VAA_00278 VAA_00279 PF00665 Integrase core domain VAA_00283 PF13744 Helix-turn-helix domain VAA_00284 PF05973 VAA_00284 VAA_00288 PF00239 Resolvase, N terminal domain VAA_00289 PF06054 VAA_00289 VAA_00291 PF01420 Type I restriction modification DNA specificity domain VAA_00294 PF01553 Acyltransferase VAA_00294 PF13444 Acetyltransferase (GNAT) domain VAA_00296 PF05638 Protein of unknown function (DUF796) VAA_00297 PF05954 Phage late control gene D protein (GPD) VAA_00298 PF13503 VAA_00298 VAA_00301 PF05488 PAAR motif VAA_00302 PF07876 Stress responsive A/B Barrel Domain VAA_00308 PF00476 DNA polymerase family A VAA_00311 PF06476 VAA_00311 VAA_00312 PF00665 Integrase core domain VAA_00312 PF13276 VAA_00312 VAA_00313 PF01527 Transposase VAA_00317 PF00929 Exonuclease VAA_00320 PF01381 Helix-turn-helix VAA_00321 PF05144 VAA_00321 VAA_00321 PF05155 VAA_00321 VAA_00322 PF02303 Helix-destabilising protein VAA_00325 PF01253 Translation initiation factor SUI1 VAA_00326 PF11782 VAA_00326 VAA_00327 PF00589 Phage integrase family VAA_00329 PF01820 D-ala D-ala ligase N-terminus VAA_00329 PF07478 D-ala D-ala ligase C-terminus VAA_00330 PF05036 Sporulation related domain VAA_00331 PF13302 Acetyltransferase (GNAT) domain VAA_00331 PF13380 CoA binding domain VAA_00331 PF13549 ATP-grasp domain VAA_00331 PF13607 Succinyl-CoA ligase like flavodoxin domain VAA_00332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00332 PF03466 LysR substrate binding domain VAA_00334 PF00929 Exonuclease VAA_00335 PF03193 Protein of unknown function, DUF258 VAA_00336 PF02666 VAA_00336 VAA_00338 PF00939 Sodium:sulfate symporter transmembrane region VAA_00340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00340 PF00672 HAMP domain VAA_00340 PF02743 Cache domain VAA_00341 PF00892 EamA-like transporter family VAA_00342 PF01676 Metalloenzyme superfamily VAA_00342 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VAA_00344 PF01551 Peptidase family M23 VAA_00346 PF00440 Bacterial regulatory proteins, tetR family VAA_00346 PF13972 Bacterial transcriptional repressor VAA_00347 PF01208 Uroporphyrinogen decarboxylase (URO-D) VAA_00348 PF00293 NUDIX domain VAA_00348 PF09297 NADH pyrophosphatase zinc ribbon domain VAA_00349 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VAA_00350 PF00623 RNA polymerase Rpb1, domain 2 VAA_00350 PF04983 RNA polymerase Rpb1, domain 3 VAA_00350 PF04997 RNA polymerase Rpb1, domain 1 VAA_00350 PF04998 RNA polymerase Rpb1, domain 5 VAA_00350 PF05000 RNA polymerase Rpb1, domain 4 VAA_00351 PF00562 RNA polymerase Rpb2, domain 6 VAA_00351 PF04560 RNA polymerase Rpb2, domain 7 VAA_00351 PF04561 RNA polymerase Rpb2, domain 2 VAA_00351 PF04563 RNA polymerase beta subunit VAA_00351 PF04565 RNA polymerase Rpb2, domain 3 VAA_00351 PF10385 RNA polymerase beta subunit external 1 domain VAA_00352 PF00542 Ribosomal protein L7/L12 C-terminal domain VAA_00352 PF16320 VAA_00352 VAA_00353 PF00466 Ribosomal protein L10 VAA_00354 PF00687 Ribosomal protein L1p/L10e family VAA_00355 PF00298 Ribosomal protein L11, RNA binding domain VAA_00355 PF03946 Ribosomal protein L11, N-terminal domain VAA_00356 PF00467 KOW motif VAA_00356 PF02357 Transcription termination factor nusG VAA_00357 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VAA_00360 PF01292 Prokaryotic cytochrome b561 VAA_00361 PF00884 Sulfatase VAA_00361 PF08019 VAA_00361 VAA_00362 PF01219 Prokaryotic diacylglycerol kinase VAA_00363 PF00589 Phage integrase family VAA_00367 PF00303 Thymidylate synthase VAA_00368 PF01790 VAA_00368 VAA_00369 PF01925 VAA_00369 VAA_00370 PF00391 PEP-utilising enzyme, mobile domain VAA_00370 PF01590 GAF domain VAA_00370 PF02896 PEP-utilising enzyme, TIM barrel domain VAA_00370 PF05524 PEP-utilising enzyme, N-terminal VAA_00371 PF00293 NUDIX domain VAA_00372 PF02976 DNA mismatch repair enzyme MutH VAA_00374 PF00248 Aldo/keto reductase family VAA_00376 PF00158 Sigma-54 interaction domain VAA_00376 PF02954 Bacterial regulatory protein, Fis family VAA_00377 PF00152 tRNA synthetases class II (D, K and N) VAA_00377 PF01336 OB-fold nucleic acid binding domain VAA_00378 PF00472 RF-1 domain VAA_00378 PF03462 PCRF domain VAA_00379 PF05525 VAA_00379 VAA_00380 PF05175 Methyltransferase small domain VAA_00381 PF00270 DEAD/DEAH box helicase VAA_00381 PF00271 Helicase conserved C-terminal domain VAA_00382 PF00009 Elongation factor Tu GTP binding domain VAA_00382 PF03144 Elongation factor Tu domain 2 VAA_00382 PF16658 VAA_00382 VAA_00383 PF00563 EAL domain VAA_00383 PF00990 GGDEF domain VAA_00384 PF00583 Acetyltransferase (GNAT) family VAA_00385 PF03603 DNA polymerase III psi subunit VAA_00386 PF13527 Acetyltransferase (GNAT) domain VAA_00387 PF02036 SCP-2 sterol transfer family VAA_00388 PF15935 VAA_00388 VAA_00389 PF15933 VAA_00389 VAA_00390 PF00589 Phage integrase family VAA_00390 PF13356 Domain of unknown function (DUF4102) VAA_00396 PF01381 Helix-turn-helix VAA_00396 PF06114 Domain of unknown function (DUF955) VAA_00401 PF00665 Integrase core domain VAA_00401 PF13276 VAA_00401 VAA_00403 PF00303 Thymidylate synthase VAA_00404 PF00303 Thymidylate synthase VAA_00405 PF02690 VAA_00405 VAA_00406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00406 PF03466 LysR substrate binding domain VAA_00407 PF01022 Bacterial regulatory protein, arsR family VAA_00408 PF01649 Ribosomal protein S20 VAA_00409 PF03023 VAA_00409 VAA_00410 PF01687 Riboflavin kinase VAA_00410 PF06574 FAD synthetase VAA_00411 PF00133 tRNA synthetases class I (I, L, M and V) VAA_00411 PF06827 Zinc finger found in FPG and IleRS VAA_00411 PF08264 Anticodon-binding domain of tRNA VAA_00412 PF01252 VAA_00412 VAA_00414 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_00415 PF02401 LytB protein VAA_00416 PF02554 VAA_00416 VAA_00416 PF13722 VAA_00416 VAA_00417 PF10973 VAA_00417 VAA_00418 PF00999 Sodium/hydrogen exchanger family VAA_00418 PF02254 TrkA-N domain VAA_00419 PF01380 SIS domain VAA_00420 PF03702 Uncharacterised protein family (UPF0075) VAA_00421 PF00933 Glycosyl hydrolase family 3 N terminal domain VAA_00422 PF00072 Response regulator receiver domain VAA_00423 PF06580 VAA_00423 VAA_00423 PF07694 5TMR of 5TMR-LYT VAA_00423 PF13492 GAF domain VAA_00424 PF00793 DAHP synthetase I family VAA_00425 PF01817 Chorismate mutase type II VAA_00425 PF02153 Prephenate dehydrogenase VAA_00426 PF07238 PilZ domain VAA_00427 PF00005 ABC transporter VAA_00427 PF12848 ABC transporter VAA_00428 PF01464 Transglycosylase SLT domain VAA_00428 PF14718 Soluble lytic murein transglycosylase L domain VAA_00429 PF01371 Trp repressor protein VAA_00430 PF01931 Protein of unknown function DUF84 VAA_00431 PF00563 EAL domain VAA_00431 PF00990 GGDEF domain VAA_00432 PF13416 Bacterial extracellular solute-binding protein VAA_00433 PF00800 Prephenate dehydratase VAA_00433 PF01817 Chorismate mutase type II VAA_00434 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VAA_00437 PF13525 Outer membrane lipoprotein VAA_00438 PF00849 RNA pseudouridylate synthase VAA_00438 PF01479 S4 domain VAA_00439 PF02578 Multi-copper polyphenol oxidoreductase laccase VAA_00440 PF00004 ATPase family associated with various cellular activities (AAA) VAA_00440 PF02861 Clp amino terminal domain VAA_00440 PF07724 AAA domain (Cdc48 subfamily) VAA_00440 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_00441 PF14882 VAA_00441 VAA_00442 PF00589 Phage integrase family VAA_00443 PF13737 VAA_00443 VAA_00445 PF01914 VAA_00445 VAA_00446 PF06611 VAA_00446 VAA_00447 PF03602 Conserved hypothetical protein 95 VAA_00448 PF00448 SRP54-type protein, GTPase domain VAA_00448 PF02881 SRP54-type protein, helical bundle domain VAA_00449 PF00005 ABC transporter VAA_00451 PF00140 Sigma-70 factor, region 1 VAA_00451 PF04542 Sigma-70 region 2 VAA_00451 PF04545 Sigma-70, region 4 VAA_00453 PF00581 Rhodanese-like domain VAA_00454 PF01694 Rhomboid family VAA_00454 PF12122 Protein of unknown function (DUF3582) VAA_00455 PF03748 VAA_00455 VAA_00456 PF04345 Chorismate lyase VAA_00457 PF01040 UbiA prenyltransferase family VAA_00458 PF01553 Acyltransferase VAA_00459 PF00717 Peptidase S24-like VAA_00459 PF01726 LexA DNA binding domain VAA_00460 PF04072 Leucine carboxyl methyltransferase VAA_00461 PF01554 MatE VAA_00462 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_00464 PF00440 Bacterial regulatory proteins, tetR family VAA_00465 PF07226 VAA_00465 VAA_00466 PF00703 Glycosyl hydrolases family 2 VAA_00466 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VAA_00466 PF02837 Glycosyl hydrolases family 2, sugar binding domain VAA_00466 PF02929 Beta galactosidase small chain VAA_00466 PF16353 VAA_00466 VAA_00469 PF05958 tRNA (Uracil-5-)-methyltransferase VAA_00470 PF00589 Phage integrase family VAA_00474 PF00239 Resolvase, N terminal domain VAA_00475 PF10008 VAA_00475 VAA_00477 PF06958 S-type Pyocin VAA_00481 PF07804 HipA-like C-terminal domain VAA_00481 PF13657 HipA N-terminal domain VAA_00483 PF01381 Helix-turn-helix VAA_00485 PF06114 Domain of unknown function (DUF955) VAA_00486 PF14350 VAA_00486 VAA_00488 PF00593 TonB dependent receptor VAA_00488 PF07715 TonB-dependent Receptor Plug Domain VAA_00489 PF01902 ATP-binding region VAA_00490 PF01177 Asp/Glu/Hydantoin racemase VAA_00492 PF02028 BCCT family transporter VAA_00494 PF01266 FAD dependent oxidoreductase VAA_00495 PF01235 VAA_00495 VAA_00497 PF01184 VAA_00497 VAA_00498 PF00182 Chitinase class I VAA_00499 PF08543 Phosphomethylpyrimidine kinase VAA_00500 PF00117 Glutamine amidotransferase class-I VAA_00500 PF00958 GMP synthase C terminal domain VAA_00500 PF02540 NAD synthase VAA_00501 PF00478 IMP dehydrogenase / GMP reductase domain VAA_00501 PF00571 CBS domain VAA_00502 PF02601 VAA_00502 VAA_00502 PF13742 VAA_00502 VAA_00503 PF07191 zinc-ribbons VAA_00504 PF01926 50S ribosome-binding GTPase VAA_00504 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VAA_00505 PF13360 PQQ-like domain VAA_00506 PF09976 Tetratricopeptide repeat VAA_00507 PF03129 Anticodon binding domain VAA_00507 PF13393 Histidyl-tRNA synthetase VAA_00508 PF04551 GcpE protein VAA_00509 PF13413 Helix-turn-helix domain VAA_00509 PF13464 VAA_00509 VAA_00510 PF04055 Radical SAM superfamily VAA_00511 PF00334 Nucleoside diphosphate kinase VAA_00512 PF00883 Cytosol aminopeptidase family, catalytic domain VAA_00512 PF12404 VAA_00512 VAA_00513 PF04384 Iron-sulphur cluster assembly VAA_00514 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_00515 PF00012 Hsp70 protein VAA_00516 PF07743 HSCB C-terminal oligomerisation domain VAA_00517 PF01521 Iron-sulphur cluster biosynthesis VAA_00518 PF01592 NifU-like N terminal domain VAA_00519 PF00266 Aminotransferase class-V VAA_00521 PF00588 SpoU rRNA Methylase family VAA_00522 PF00459 Inositol monophosphatase family VAA_00523 PF02355 Protein export membrane protein VAA_00523 PF07549 SecD/SecF GG Motif VAA_00524 PF02355 Protein export membrane protein VAA_00524 PF07549 SecD/SecF GG Motif VAA_00524 PF13721 SecD export protein N-terminal TM region VAA_00525 PF02699 Preprotein translocase subunit VAA_00526 PF01702 Queuine tRNA-ribosyltransferase VAA_00527 PF02547 Queuosine biosynthesis protein VAA_00528 PF00571 CBS domain VAA_00529 PF00463 Isocitrate lyase family VAA_00531 PF01274 Malate synthase VAA_00532 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00532 PF03466 LysR substrate binding domain VAA_00533 PF00578 AhpC/TSA family VAA_00533 PF10417 C-terminal domain of 1-Cys peroxiredoxin VAA_00534 PF03932 CutC family VAA_00535 PF01895 PhoU domain VAA_00536 PF00005 ABC transporter VAA_00537 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00538 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00539 PF02503 Polyphosphate kinase middle domain VAA_00539 PF13089 Polyphosphate kinase N-terminal domain VAA_00539 PF13090 Polyphosphate kinase C-terminal domain VAA_00540 PF02541 Ppx/GppA phosphatase family VAA_00541 PF12849 PBP superfamily domain VAA_00542 PF00512 His Kinase A (phospho-acceptor) domain VAA_00542 PF00989 PAS fold VAA_00542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00542 PF11808 VAA_00542 VAA_00543 PF00072 Response regulator receiver domain VAA_00543 PF00486 Transcriptional regulatory protein, C terminal VAA_00544 PF04381 Putative exonuclease, RdgC VAA_00545 PF01136 VAA_00545 VAA_00545 PF16325 VAA_00545 VAA_00546 PF00037 4Fe-4S binding domain VAA_00547 PF00881 Nitroreductase family VAA_00549 PF01037 AsnC family VAA_00549 PF13404 AsnC-type helix-turn-helix domain VAA_00550 PF04445 Putative SAM-dependent methyltransferase VAA_00552 PF00892 EamA-like transporter family VAA_00553 PF00582 Universal stress protein family VAA_00554 PF00210 Ferritin-like domain VAA_00555 PF10625 VAA_00555 VAA_00556 PF08668 HDOD domain VAA_00557 PF03486 HI0933-like protein VAA_00558 PF06414 Zeta toxin VAA_00559 PF02653 VAA_00559 VAA_00560 PF00005 ABC transporter VAA_00561 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA_00563 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VAA_00563 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VAA_00564 PF00596 Class II Aldolase and Adducin N-terminal domain VAA_00565 PF02610 L-arabinose isomerase VAA_00565 PF11762 L-arabinose isomerase C-terminal domain VAA_00567 PF02311 AraC-like ligand binding domain VAA_00567 PF12833 Helix-turn-helix domain VAA_00568 PF00892 EamA-like transporter family VAA_00569 PF02646 VAA_00569 VAA_00570 PF01209 ubiE/COQ5 methyltransferase family VAA_00571 PF02036 SCP-2 sterol transfer family VAA_00572 PF03109 VAA_00572 VAA_00573 PF02416 mttA/Hcf106 family VAA_00574 PF02416 mttA/Hcf106 family VAA_00575 PF00902 Sec-independent protein translocase protein (TatC) VAA_00576 PF01026 TatD related DNase VAA_00577 PF00490 Delta-aminolevulinic acid dehydratase VAA_00578 PF00476 DNA polymerase family A VAA_00578 PF01367 5'-3' exonuclease, C-terminal SAM fold VAA_00578 PF01612 3'-5' exonuclease VAA_00578 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VAA_00579 PF01926 50S ribosome-binding GTPase VAA_00580 PF00034 Cytochrome c VAA_00581 PF13489 Methyltransferase domain VAA_00582 PF04220 VAA_00582 VAA_00583 PF10675 VAA_00583 VAA_00584 PF04055 Radical SAM superfamily VAA_00584 PF06969 HemN C-terminal domain VAA_00585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00585 PF03466 LysR substrate binding domain VAA_00586 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VAA_00586 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain VAA_00587 PF04380 VAA_00587 VAA_00588 PF00873 AcrB/AcrD/AcrF family VAA_00589 PF00529 HlyD family secretion protein VAA_00589 PF16576 VAA_00589 VAA_00590 PF00440 Bacterial regulatory proteins, tetR family VAA_00590 PF16295 VAA_00590 VAA_00591 PF00580 UvrD/REP helicase N-terminal domain VAA_00591 PF13361 UvrD-like helicase C-terminal domain VAA_00592 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VAA_00594 PF00005 ABC transporter VAA_00594 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_00595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_00596 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00597 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00597 PF12911 VAA_00597 VAA_00599 PF05036 Sporulation related domain VAA_00601 PF00072 Response regulator receiver domain VAA_00602 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_00603 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_00604 PF12844 Helix-turn-helix domain VAA_00606 PF00271 Helicase conserved C-terminal domain VAA_00606 PF04851 Type III restriction enzyme, res subunit VAA_00609 PF00175 Oxidoreductase NAD-binding domain VAA_00609 PF00970 Oxidoreductase FAD-binding domain VAA_00610 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_00611 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VAA_00613 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_00613 PF07497 Rho termination factor, RNA-binding domain VAA_00613 PF07498 Rho termination factor, N-terminal domain VAA_00614 PF00085 Thioredoxin VAA_00615 PF00270 DEAD/DEAH box helicase VAA_00615 PF00271 Helicase conserved C-terminal domain VAA_00616 PF02541 Ppx/GppA phosphatase family VAA_00617 PF02592 VAA_00617 VAA_00618 PF00625 Guanylate kinase VAA_00619 PF01192 RNA polymerase Rpb6 VAA_00620 PF02824 TGS domain VAA_00620 PF04607 Region found in RelA / SpoT proteins VAA_00620 PF13291 ACT domain VAA_00620 PF13328 HD domain VAA_00621 PF00270 DEAD/DEAH box helicase VAA_00621 PF00271 Helicase conserved C-terminal domain VAA_00621 PF17191 VAA_00621 VAA_00622 PF00860 Permease family VAA_00623 PF00512 His Kinase A (phospho-acceptor) domain VAA_00623 PF00672 HAMP domain VAA_00623 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00624 PF00072 Response regulator receiver domain VAA_00624 PF00486 Transcriptional regulatory protein, C terminal VAA_00625 PF14600 Cellulose-binding domain VAA_00626 PF11383 VAA_00626 VAA_00627 PF00881 Nitroreductase family VAA_00628 PF03992 Antibiotic biosynthesis monooxygenase VAA_00629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00629 PF03466 LysR substrate binding domain VAA_00630 PF12847 Methyltransferase domain VAA_00631 PF06942 VAA_00631 VAA_00632 PF05145 VAA_00632 VAA_00634 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA_00634 PF03449 Transcription elongation factor, N-terminal VAA_00635 PF00575 S1 RNA binding domain VAA_00635 PF09371 Tex-like protein N-terminal domain VAA_00635 PF12836 Helix-hairpin-helix motif VAA_00635 PF16921 VAA_00635 VAA_00638 PF00561 alpha/beta hydrolase fold VAA_00639 PF00156 Phosphoribosyl transferase domain VAA_00640 PF01106 NifU-like domain VAA_00640 PF01521 Iron-sulphur cluster biosynthesis VAA_00641 PF00293 NUDIX domain VAA_00642 PF00459 Inositol monophosphatase family VAA_00643 PF01203 VAA_00643 VAA_00644 PF04612 Type II secretion system (T2SS), protein M VAA_00645 PF05134 Type II secretion system (T2SS), protein L VAA_00645 PF12693 GspL periplasmic domain VAA_00646 PF03934 Type II secretion system (T2SS), protein K VAA_00647 PF07963 Prokaryotic N-terminal methylation motif VAA_00647 PF11612 Type II secretion system (T2SS), protein J VAA_00648 PF02501 Type II secretion system (T2SS), protein I VAA_00648 PF07963 Prokaryotic N-terminal methylation motif VAA_00649 PF07963 Prokaryotic N-terminal methylation motif VAA_00649 PF12019 Type II transport protein GspH VAA_00650 PF07963 Prokaryotic N-terminal methylation motif VAA_00650 PF08334 Type II secretion system (T2SS), protein G VAA_00651 PF00482 Type II secretion system (T2SS), protein F VAA_00652 PF00437 Type II/IV secretion system protein VAA_00653 PF00263 VAA_00653 VAA_00653 PF03958 Bacterial type II/III secretion system short domain VAA_00654 PF11356 Type IV pilus biogenesis VAA_00655 PF01479 S4 domain VAA_00656 PF01430 Hsp33 protein VAA_00658 PF01293 Phosphoenolpyruvate carboxykinase VAA_00659 PF05170 VAA_00659 VAA_00660 PF02580 D-Tyr-tRNA(Tyr) deacylase VAA_00661 PF03631 VAA_00661 VAA_00662 PF00009 Elongation factor Tu GTP binding domain VAA_00662 PF00679 Elongation factor G C-terminus VAA_00662 PF03144 Elongation factor Tu domain 2 VAA_00663 PF00120 Glutamine synthetase, catalytic domain VAA_00663 PF03951 Glutamine synthetase, beta-Grasp domain VAA_00664 PF13511 VAA_00664 VAA_00666 PF00512 His Kinase A (phospho-acceptor) domain VAA_00666 PF00989 PAS fold VAA_00666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00669 PF00563 EAL domain VAA_00669 PF00990 GGDEF domain VAA_00669 PF02743 Cache domain VAA_0067 PF00072 Response regulator receiver domain VAA_0067 PF00158 Sigma-54 interaction domain VAA_0067 PF02954 Bacterial regulatory protein, Fis family VAA_00670 PF00962 Adenosine/AMP deaminase VAA_00671 PF13245 Part of AAA domain VAA_00671 PF13361 UvrD-like helicase C-terminal domain VAA_00673 PF14350 VAA_00673 VAA_00675 PF07804 HipA-like C-terminal domain VAA_00675 PF13657 HipA N-terminal domain VAA_00676 PF01381 Helix-turn-helix VAA_00677 PF00140 Sigma-70 factor, region 1 VAA_00677 PF03979 Sigma-70 factor, region 1 VAA_00677 PF04539 Sigma-70 region 3 VAA_00677 PF04542 Sigma-70 region 2 VAA_00677 PF04545 Sigma-70, region 4 VAA_00677 PF04546 Sigma-70, non-essential region VAA_00678 PF01807 CHC2 zinc finger VAA_00678 PF08275 DNA primase catalytic core, N-terminal domain VAA_00678 PF08278 DNA primase DnaG DnaB-binding VAA_00678 PF10410 DnaB-helicase binding domain of primase VAA_00678 PF13155 Toprim-like VAA_00679 PF09424 Yqey-like protein VAA_00680 PF01165 Ribosomal protein S21 VAA_00682 PF00814 Glycoprotease family VAA_00684 PF00561 alpha/beta hydrolase fold VAA_00685 PF02660 VAA_00685 VAA_00686 PF02152 Dihydroneopterin aldolase VAA_00687 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VAA_00688 PF02673 VAA_00688 VAA_00689 PF04977 Septum formation initiator VAA_00690 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VAA_00691 PF02542 YgbB family VAA_00692 PF01142 tRNA pseudouridine synthase D (TruD) VAA_00693 PF01975 Survival protein SurE VAA_00694 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) VAA_00695 PF01476 LysM domain VAA_00695 PF01551 Peptidase family M23 VAA_00696 PF00140 Sigma-70 factor, region 1 VAA_00696 PF04539 Sigma-70 region 3 VAA_00696 PF04542 Sigma-70 region 2 VAA_00696 PF04545 Sigma-70, region 4 VAA_00697 PF00488 MutS domain V VAA_00697 PF01624 MutS domain I VAA_00697 PF05188 MutS domain II VAA_00697 PF05190 MutS family domain IV VAA_00697 PF05192 MutS domain III VAA_00698 PF00291 Pyridoxal-phosphate dependent enzyme VAA_00699 PF13531 Bacterial extracellular solute-binding protein VAA_00700 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00701 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00702 PF00005 ABC transporter VAA_00702 PF12857 VAA_00702 VAA_00703 PF02464 Competence-damaged protein VAA_00704 PF00154 recA bacterial DNA recombination protein VAA_00705 PF02631 RecX family VAA_00706 PF01411 tRNA synthetases class II (A) VAA_00706 PF02272 DHHA1 domain VAA_00706 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VAA_00707 PF00696 Amino acid kinase family VAA_00708 PF02599 Global regulator protein family VAA_00709 PF04277 VAA_00709 VAA_00710 PF00364 Biotin-requiring enzyme VAA_00710 PF00682 HMGL-like VAA_00710 PF02436 Conserved carboxylase domain VAA_00711 PF03977 VAA_00711 VAA_00712 PF08240 Alcohol dehydrogenase GroES-like domain VAA_00712 PF13602 Zinc-binding dehydrogenase VAA_00713 PF09335 VAA_00713 VAA_00714 PF00675 Insulinase (Peptidase family M16) VAA_00714 PF05193 Peptidase M16 inactive domain VAA_00715 PF04262 Glutamate-cysteine ligase VAA_00716 PF02664 S-Ribosylhomocysteinase (LuxS) VAA_00718 PF01595 VAA_00718 VAA_00719 PF01578 VAA_00719 VAA_00720 PF00448 SRP54-type protein, GTPase domain VAA_00720 PF02881 SRP54-type protein, helical bundle domain VAA_00720 PF02978 Signal peptide binding domain VAA_00721 PF00886 Ribosomal protein S16 VAA_00722 PF01782 RimM N-terminal domain VAA_00722 PF05239 PRC-barrel domain VAA_00723 PF01746 tRNA (Guanine-1)-methyltransferase VAA_00724 PF01245 Ribosomal protein L19 VAA_00725 PF03884 Domain of unknown function (DUF329) VAA_00726 PF07072 Protein of unknown function (DUF1342) VAA_00727 PF01121 Dephospho-CoA kinase VAA_00728 PF01478 Type IV leader peptidase family VAA_00728 PF06750 VAA_00728 VAA_00729 PF00482 Type II secretion system (T2SS), protein F VAA_00731 PF00437 Type II/IV secretion system protein VAA_00731 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VAA_00732 PF00114 Pilin (bacterial filament) VAA_00732 PF07963 Prokaryotic N-terminal methylation motif VAA_00733 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VAA_00733 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VAA_00734 PF01510 N-acetylmuramoyl-L-alanine amidase VAA_00735 PF00258 Flavodoxin VAA_00736 PF00589 Phage integrase family VAA_00736 PF02899 Phage integrase, N-terminal SAM-like domain VAA_00737 PF10411 Disulfide bond isomerase protein N-terminus VAA_00737 PF13098 Thioredoxin-like domain VAA_00738 PF01368 DHH family VAA_00738 PF02272 DHHA1 domain VAA_00739 PF00392 Bacterial regulatory proteins, gntR family VAA_00739 PF07729 FCD domain VAA_00740 PF00456 Transketolase, thiamine diphosphate binding domain VAA_00741 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VAA_00741 PF00364 Biotin-requiring enzyme VAA_00741 PF02817 e3 binding domain VAA_00742 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA_00742 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_00743 PF00440 Bacterial regulatory proteins, tetR family VAA_00744 PF00156 Phosphoribosyl transferase domain VAA_00745 PF00484 Carbonic anhydrase VAA_00746 PF00916 VAA_00746 VAA_00746 PF01740 STAS domain VAA_00747 PF00005 ABC transporter VAA_00748 PF01061 VAA_00748 VAA_00749 PF13505 Outer membrane protein beta-barrel domain VAA_00750 PF02569 Pantoate-beta-alanine ligase VAA_00751 PF02548 Ketopantoate hydroxymethyltransferase VAA_00752 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VAA_00753 PF01743 Poly A polymerase head domain VAA_00753 PF12626 Polymerase A arginine-rich C-terminus VAA_00753 PF12627 Probable RNA and SrmB- binding site of polymerase A VAA_00755 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA_00756 PF01258 Prokaryotic dksA/traR C4-type zinc finger VAA_00757 PF03749 Sugar fermentation stimulation protein VAA_00758 PF00270 DEAD/DEAH box helicase VAA_00758 PF00271 Helicase conserved C-terminal domain VAA_00758 PF04408 Helicase associated domain (HA2) VAA_00758 PF08482 VAA_00758 VAA_00759 PF00905 Penicillin binding protein transpeptidase domain VAA_00759 PF00912 Transglycosylase VAA_00759 PF14814 Bifunctional transglycosylase second domain VAA_00760 PF01734 Patatin-like phospholipase VAA_00760 PF07244 Surface antigen variable number repeat VAA_00761 PF00330 Aconitase family (aconitate hydratase) VAA_00761 PF06434 Aconitate hydratase 2 N-terminus VAA_00761 PF11791 Aconitate B N-terminal domain VAA_00762 PF02595 Glycerate kinase family VAA_00763 PF02447 VAA_00763 VAA_00764 PF05651 VAA_00764 VAA_00764 PF13556 PucR C-terminal helix-turn-helix domain VAA_00765 PF06062 VAA_00765 VAA_00766 PF00543 Nitrogen regulatory protein P-II VAA_00767 PF00909 Ammonium Transporter Family VAA_00768 PF13343 Bacterial extracellular solute-binding protein VAA_00769 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00770 PF00005 ABC transporter VAA_00770 PF08402 TOBE domain VAA_00771 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA_00771 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA_00771 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA_00771 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA_00772 PF06165 Glycosyltransferase family 36 VAA_00772 PF17167 VAA_00772 VAA_00773 PF00728 Glycosyl hydrolase family 20, catalytic domain VAA_00773 PF02838 Glycosyl hydrolase family 20, domain 2 VAA_00774 PF01869 BadF/BadG/BcrA/BcrD ATPase family VAA_00775 PF00759 Glycosyl hydrolase family 9 VAA_00775 PF02927 N-terminal ig-like domain of cellulase VAA_00776 PF00005 ABC transporter VAA_00776 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_00777 PF00005 ABC transporter VAA_00777 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_00778 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00778 PF12911 VAA_00778 VAA_00779 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_00782 PF00072 Response regulator receiver domain VAA_00782 PF00512 His Kinase A (phospho-acceptor) domain VAA_00782 PF00672 HAMP domain VAA_00782 PF00989 PAS fold VAA_00782 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00783 PF05175 Methyltransferase small domain VAA_00783 PF08468 Methyltransferase small domain N-terminal VAA_00784 PF01594 VAA_00784 VAA_00785 PF00202 Aminotransferase class-III VAA_00786 PF01521 Iron-sulphur cluster biosynthesis VAA_00787 PF16576 VAA_00787 VAA_00788 PF00873 AcrB/AcrD/AcrF family VAA_00789 PF01551 Peptidase family M23 VAA_00789 PF04225 Opacity-associated protein A LysM-like domain VAA_00789 PF08525 VAA_00789 VAA_00790 PF00579 tRNA synthetases class I (W and Y) VAA_00792 PF01769 Divalent cation transporter VAA_00793 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VAA_00794 PF13609 Gram-negative porin VAA_00795 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA_00795 PF03449 Transcription elongation factor, N-terminal VAA_00796 PF01985 CRS1 / YhbY (CRM) domain VAA_00797 PF01728 FtsJ-like methyltransferase VAA_00798 PF00004 ATPase family associated with various cellular activities (AAA) VAA_00798 PF01434 Peptidase family M41 VAA_00798 PF06480 FtsH Extracellular VAA_00799 PF00809 Pterin binding enzyme VAA_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA_00801 PF03840 Preprotein translocase SecG subunit VAA_00802 PF02576 Uncharacterised BCR, YhbC family COG0779 VAA_00802 PF17384 VAA_00802 VAA_00803 PF08529 NusA N-terminal domain VAA_00803 PF13184 NusA-like KH domain VAA_00803 PF14520 Helix-hairpin-helix domain VAA_00804 PF00009 Elongation factor Tu GTP binding domain VAA_00804 PF03144 Elongation factor Tu domain 2 VAA_00804 PF04760 Translation initiation factor IF-2, N-terminal region VAA_00804 PF08364 VAA_00804 VAA_00804 PF11987 Translation-initiation factor 2 VAA_00805 PF02033 Ribosome-binding factor A VAA_00806 PF01509 TruB family pseudouridylate synthase (N terminal domain) VAA_00806 PF09157 Pseudouridine synthase II TruB, C-terminal VAA_00806 PF16198 VAA_00806 VAA_00807 PF00312 Ribosomal protein S15 VAA_00808 PF00013 KH domain VAA_00808 PF00575 S1 RNA binding domain VAA_00808 PF01138 3' exoribonuclease family, domain 1 VAA_00808 PF03725 3' exoribonuclease family, domain 2 VAA_00808 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VAA_00810 PF12802 MarR family VAA_00811 PF01554 MatE VAA_00812 PF01136 VAA_00812 VAA_00813 PF01136 VAA_00813 VAA_00814 PF00563 EAL domain VAA_00814 PF00990 GGDEF domain VAA_00814 PF08448 PAS fold VAA_00814 PF13188 PAS domain VAA_00815 PF12724 Flavodoxin domain VAA_00816 PF02386 Cation transport protein VAA_00817 PF01205 Uncharacterized protein family UPF0029 VAA_00817 PF09186 Domain of unknown function (DUF1949) VAA_00818 PF00378 Enoyl-CoA hydratase/isomerase family VAA_00818 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VAA_00818 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VAA_00819 PF00108 Thiolase, N-terminal domain VAA_00819 PF02803 Thiolase, C-terminal domain VAA_00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00822 PF07690 Major Facilitator Superfamily VAA_00823 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_00823 PF12804 MobA-like NTP transferase domain VAA_00824 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VAA_00824 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VAA_00825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_00826 PF00231 ATP synthase VAA_00827 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_00827 PF00306 ATP synthase alpha/beta chain, C terminal domain VAA_00827 PF02874 ATP synthase alpha/beta family, beta-barrel domain VAA_00828 PF00213 ATP synthase delta (OSCP) subunit VAA_00829 PF00430 ATP synthase B/B' CF(0) VAA_00830 PF00137 ATP synthase subunit C VAA_00831 PF00119 ATP synthase A chain VAA_00832 PF03899 VAA_00832 VAA_00833 PF02195 ParB-like nuclease domain VAA_00834 PF13614 AAA domain VAA_00835 PF02527 rRNA small subunit methyltransferase G VAA_00836 PF01134 Glucose inhibited division protein A VAA_00836 PF13932 GidA associated domain 3 VAA_00837 PF00258 Flavodoxin VAA_00838 PF01926 50S ribosome-binding GTPase VAA_00838 PF10396 GTP-binding protein TrmE N-terminus VAA_00838 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE VAA_00839 PF02096 60Kd inner membrane protein VAA_00839 PF14849 YidC periplasmic domain VAA_00840 PF01809 VAA_00840 VAA_00841 PF00825 Ribonuclease P VAA_00842 PF00468 Ribosomal protein L34 VAA_00843 PF00005 ABC transporter VAA_00844 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00845 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_00846 PF00308 Bacterial dnaA protein VAA_00846 PF08299 Bacterial dnaA protein helix-turn-helix VAA_00846 PF11638 DnaA N-terminal domain VAA_00847 PF00712 DNA polymerase III beta subunit, N-terminal domain VAA_00847 PF02767 DNA polymerase III beta subunit, central domain VAA_00847 PF02768 DNA polymerase III beta subunit, C-terminal domain VAA_00848 PF02463 RecF/RecN/SMC N terminal domain VAA_00849 PF00204 DNA gyrase B VAA_00849 PF00986 DNA gyrase B subunit, carboxyl terminus VAA_00849 PF01751 Toprim domain VAA_00849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00850 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA_00852 PF00011 Hsp20/alpha crystallin family VAA_00853 PF00155 Aminotransferase class I and II VAA_00854 PF02092 VAA_00854 VAA_00854 PF05746 DALR anticodon binding domain VAA_00855 PF02091 Glycyl-tRNA synthetase alpha subunit VAA_00857 PF01169 VAA_00857 VAA_00859 PF01206 Sulfurtransferase TusA VAA_00862 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00862 PF03466 LysR substrate binding domain VAA_00864 PF08240 Alcohol dehydrogenase GroES-like domain VAA_00865 PF00291 Pyridoxal-phosphate dependent enzyme VAA_00865 PF00585 C-terminal regulatory domain of Threonine dehydratase VAA_00866 PF00920 Dehydratase family VAA_00867 PF01063 Aminotransferase class IV VAA_00869 PF13710 ACT domain VAA_00870 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_00870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_00870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_00872 PF01078 Magnesium chelatase, subunit ChlI VAA_00872 PF13541 Subunit ChlI of Mg-chelatase VAA_00876 PF00589 Phage integrase family VAA_00880 PF00899 ThiF family VAA_00885 PF05981 VAA_00885 VAA_00886 PF00294 pfkB family carbohydrate kinase VAA_00887 PF00563 EAL domain VAA_00887 PF00990 GGDEF domain VAA_00887 PF08447 PAS fold VAA_00888 PF00194 Eukaryotic-type carbonic anhydrase VAA_00889 PF00282 Pyridoxal-dependent decarboxylase conserved domain VAA_00890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00890 PF00672 HAMP domain VAA_00890 PF02743 Cache domain VAA_00892 PF00491 Arginase family VAA_00893 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VAA_00895 PF00005 ABC transporter VAA_00895 PF00571 CBS domain VAA_00896 PF00528 Binding-protein-dependent transport system inner membrane component VAA_00897 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VAA_00898 PF01047 MarR family VAA_00900 PF00924 Mechanosensitive ion channel VAA_00901 PF01769 Divalent cation transporter VAA_00901 PF03448 MgtE intracellular N domain VAA_00902 PF00696 Amino acid kinase family VAA_00903 PF06339 VAA_00903 VAA_00904 PF00202 Aminotransferase class-III VAA_00905 PF00583 Acetyltransferase (GNAT) family VAA_00907 PF01467 Cytidylyltransferase VAA_00908 PF02540 NAD synthase VAA_00909 PF00440 Bacterial regulatory proteins, tetR family VAA_00911 PF04175 Protein of unknown function (DUF406) VAA_00914 PF01553 Acyltransferase VAA_00916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00916 PF00672 HAMP domain VAA_00916 PF02743 Cache domain VAA_00917 PF00128 Alpha amylase, catalytic domain VAA_00918 PF01323 DSBA-like thioredoxin domain VAA_00920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00920 PF00672 HAMP domain VAA_00921 PF07726 ATPase family associated with various cellular activities (AAA) VAA_00922 PF01882 VAA_00922 VAA_00923 PF14316 VAA_00923 VAA_00924 PF00092 von Willebrand factor type A domain VAA_00925 PF00515 Tetratricopeptide repeat VAA_00925 PF13519 von Willebrand factor type A domain VAA_00926 PF13584 VAA_00926 VAA_00927 PF04402 Protein of unknown function (DUF541) VAA_00928 PF00990 GGDEF domain VAA_00929 PF03734 L,D-transpeptidase catalytic domain VAA_00930 PF01844 HNH endonuclease VAA_00931 PF12843 VAA_00931 VAA_00932 PF00884 Sulfatase VAA_00933 PF01292 Prokaryotic cytochrome b561 VAA_00934 PF01219 Prokaryotic diacylglycerol kinase VAA_00935 PF00107 Zinc-binding dehydrogenase VAA_00935 PF08240 Alcohol dehydrogenase GroES-like domain VAA_00936 PF00155 Aminotransferase class I and II VAA_00937 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00937 PF03466 LysR substrate binding domain VAA_00938 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA_00940 PF07690 Major Facilitator Superfamily VAA_00941 PF00072 Response regulator receiver domain VAA_00941 PF00196 Bacterial regulatory proteins, luxR family VAA_00942 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00942 PF05231 VAA_00942 VAA_00942 PF07730 Histidine kinase VAA_00943 PF07690 Major Facilitator Superfamily VAA_00944 PF07361 Cytochrome b562 VAA_00946 PF13487 HD domain VAA_00947 PF04013 Putative SAM-dependent RNA methyltransferase VAA_00948 PF07690 Major Facilitator Superfamily VAA_00949 PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) VAA_00950 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_00950 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA_00951 PF01022 Bacterial regulatory protein, arsR family VAA_00952 PF01758 Sodium Bile acid symporter family VAA_00953 PF01022 Bacterial regulatory protein, arsR family VAA_00954 PF00916 VAA_00954 VAA_00954 PF01740 STAS domain VAA_00955 PF00582 Universal stress protein family VAA_00956 PF17327 VAA_00956 VAA_00957 PF00072 Response regulator receiver domain VAA_00957 PF00512 His Kinase A (phospho-acceptor) domain VAA_00957 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_00958 PF00478 IMP dehydrogenase / GMP reductase domain VAA_00959 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA_00959 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_0096 PF13614 AAA domain VAA_00961 PF00072 Response regulator receiver domain VAA_00964 PF00313 'Cold-shock' DNA-binding domain VAA_00965 PF07152 YaeQ protein VAA_00966 PF00042 Globin VAA_00966 PF00175 Oxidoreductase NAD-binding domain VAA_00966 PF00970 Oxidoreductase FAD-binding domain VAA_00967 PF00158 Sigma-54 interaction domain VAA_00967 PF01590 GAF domain VAA_00968 PF00924 Mechanosensitive ion channel VAA_00969 PF01546 Peptidase family M20/M25/M40 VAA_00969 PF07687 Peptidase dimerisation domain VAA_00970 PF01773 Na+ dependent nucleoside transporter N-terminus VAA_00970 PF07662 Na+ dependent nucleoside transporter C-terminus VAA_00970 PF07670 Nucleoside recognition VAA_00971 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_00971 PF00175 Oxidoreductase NAD-binding domain VAA_00971 PF00970 Oxidoreductase FAD-binding domain VAA_00971 PF03473 MOSC domain VAA_00971 PF03476 MOSC N-terminal beta barrel domain VAA_00972 PF01979 Amidohydrolase family VAA_00973 PF05958 tRNA (Uracil-5-)-methyltransferase VAA_00974 PF05661 VAA_00974 VAA_00976 PF13487 HD domain VAA_00978 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VAA_00981 PF13817 VAA_00981 VAA_00982 PF03193 Protein of unknown function, DUF258 VAA_00984 PF13411 MerR HTH family regulatory protein VAA_00984 PF13649 Methyltransferase domain VAA_00985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_00985 PF00672 HAMP domain VAA_00987 PF08857 Putative ParB-like nuclease VAA_00989 PF02525 Flavodoxin-like fold VAA_00990 PF00248 Aldo/keto reductase family VAA_00991 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_00991 PF03466 LysR substrate binding domain VAA_00992 PF09952 VAA_00992 VAA_00993 PF11168 VAA_00993 VAA_00994 PF16576 VAA_00994 VAA_00996 PF07885 Ion channel VAA_00997 PF02347 Glycine cleavage system P-protein VAA_00998 PF01597 Glycine cleavage H-protein VAA_00999 PF00464 Serine hydroxymethyltransferase VAA_01000 PF01381 Helix-turn-helix VAA_01000 PF07883 Cupin domain VAA_01001 PF01571 Aminomethyltransferase folate-binding domain VAA_01001 PF08669 Glycine cleavage T-protein C-terminal barrel domain VAA_01002 PF00089 Trypsin VAA_01003 PF00675 Insulinase (Peptidase family M16) VAA_01003 PF05193 Peptidase M16 inactive domain VAA_01004 PF09335 VAA_01004 VAA_01005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_01005 PF02378 Phosphotransferase system, EIIC VAA_01006 PF00294 pfkB family carbohydrate kinase VAA_01007 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_01007 PF00381 PTS HPr component phosphorylation site VAA_01008 PF00356 Bacterial regulatory proteins, lacI family VAA_01008 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA_01009 PF00149 Calcineurin-like phosphoesterase VAA_01009 PF12320 Type 5 capsule protein repressor C-terminal domain VAA_01010 PF13476 AAA domain VAA_01010 PF13558 Putative exonuclease SbcCD, C subunit VAA_01011 PF00072 Response regulator receiver domain VAA_01011 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01012 PF00155 Aminotransferase class I and II VAA_01013 PF03595 Voltage-dependent anion channel VAA_01014 PF00654 Voltage gated chloride channel VAA_01015 PF02492 CobW/HypB/UreG, nucleotide-binding domain VAA_01016 PF00005 ABC transporter VAA_01017 PF02687 VAA_01017 VAA_01017 PF12704 MacB-like periplasmic core domain VAA_01018 PF02687 VAA_01018 VAA_01018 PF12704 MacB-like periplasmic core domain VAA_01019 PF02321 Outer membrane efflux protein VAA_01020 PF16576 VAA_01020 VAA_01021 PF01926 50S ribosome-binding GTPase VAA_01023 PF13503 VAA_01023 VAA_01024 PF01764 Lipase (class 3) VAA_01028 PF03608 VAA_01028 VAA_01029 PF03612 VAA_01029 VAA_01029 PF07663 VAA_01029 VAA_01030 PF03829 PTS system glucitol/sorbitol-specific IIA component VAA_01031 PF00106 short chain dehydrogenase VAA_01032 PF00455 VAA_01032 VAA_01032 PF08220 DeoR-like helix-turn-helix domain VAA_01033 PF03608 VAA_01033 VAA_01034 PF03612 VAA_01034 VAA_01034 PF07663 VAA_01034 VAA_01035 PF03829 PTS system glucitol/sorbitol-specific IIA component VAA_01036 PF00005 ABC transporter VAA_01036 PF08402 TOBE domain VAA_01039 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_01040 PF16941 VAA_01040 VAA_01041 PF13416 Bacterial extracellular solute-binding protein VAA_01042 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01043 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01044 PF02903 Alpha amylase, N-terminal ig-like domain VAA_01046 PF01978 Sugar-specific transcriptional regulator TrmB VAA_01046 PF11495 Archaeal transcriptional regulator TrmB VAA_01049 PF02355 Protein export membrane protein VAA_01049 PF07549 SecD/SecF GG Motif VAA_01049 PF13721 SecD export protein N-terminal TM region VAA_01050 PF02355 Protein export membrane protein VAA_01050 PF07549 SecD/SecF GG Motif VAA_01051 PF09574 VAA_01051 VAA_01052 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA_01053 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VAA_01054 PF00384 Molybdopterin oxidoreductase VAA_01054 PF01568 Molydopterin dinucleotide binding domain VAA_01054 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VAA_01055 PF03927 NapD protein VAA_01056 PF12838 4Fe-4S dicluster domain VAA_01058 PF00672 HAMP domain VAA_01058 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01058 PF07730 Histidine kinase VAA_01058 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VAA_01059 PF00072 Response regulator receiver domain VAA_01059 PF00196 Bacterial regulatory proteins, luxR family VAA_01060 PF03606 VAA_01060 VAA_01061 PF00487 VAA_01061 VAA_01062 PF00583 Acetyltransferase (GNAT) family VAA_01063 PF01575 MaoC like domain VAA_01064 PF12727 PBP superfamily domain VAA_01065 PF11225 VAA_01065 VAA_01066 PF00575 S1 RNA binding domain VAA_01066 PF00773 RNB domain VAA_01066 PF08206 Ribonuclease B OB domain VAA_01067 PF00270 DEAD/DEAH box helicase VAA_01067 PF00271 Helicase conserved C-terminal domain VAA_01067 PF03880 DbpA RNA binding domain VAA_01068 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA_01068 PF02824 TGS domain VAA_01068 PF03129 Anticodon binding domain VAA_01068 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VAA_01069 PF00707 Translation initiation factor IF-3, C-terminal domain VAA_01069 PF05198 Translation initiation factor IF-3, N-terminal domain VAA_01070 PF01632 Ribosomal protein L35 VAA_01071 PF00453 Ribosomal protein L20 VAA_01072 PF00589 Phage integrase family VAA_01077 PF09829 VAA_01077 VAA_01078 PF00267 Gram-negative porin VAA_01079 PF00533 BRCA1 C Terminus (BRCT) domain VAA_01079 PF01653 NAD-dependent DNA ligase adenylation domain VAA_01079 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VAA_01079 PF03120 NAD-dependent DNA ligase OB-fold domain VAA_01079 PF12826 Helix-hairpin-helix motif VAA_01079 PF14520 Helix-hairpin-helix domain VAA_01080 PF04354 ZipA, C-terminal FtsZ-binding domain VAA_01081 PF07264 Etoposide-induced protein 2 VAA_01082 PF00291 Pyridoxal-phosphate dependent enzyme VAA_01083 PF00381 PTS HPr component phosphorylation site VAA_01084 PF00391 PEP-utilising enzyme, mobile domain VAA_01084 PF02896 PEP-utilising enzyme, TIM barrel domain VAA_01084 PF05524 PEP-utilising enzyme, N-terminal VAA_01085 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VAA_01086 PF01494 FAD binding domain VAA_01087 PF00919 Uncharacterized protein family UPF0004 VAA_01087 PF01938 TRAM domain VAA_01087 PF04055 Radical SAM superfamily VAA_01088 PF02562 PhoH-like protein VAA_01089 PF02130 Uncharacterized protein family UPF0054 VAA_01090 PF00571 CBS domain VAA_01090 PF03471 Transporter associated domain VAA_01091 PF00795 Carbon-nitrogen hydrolase VAA_01092 PF07295 VAA_01092 VAA_01093 PF00133 tRNA synthetases class I (I, L, M and V) VAA_01093 PF08264 Anticodon-binding domain of tRNA VAA_01093 PF13603 Leucyl-tRNA synthetase, Domain 2 VAA_01094 PF04390 Lipopolysaccharide-assembly VAA_01095 PF06144 DNA polymerase III, delta subunit VAA_01095 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VAA_01096 PF02410 Oligomerisation domain VAA_01097 PF02590 Predicted SPOUT methyltransferase VAA_01098 PF00905 Penicillin binding protein transpeptidase domain VAA_01098 PF03717 Penicillin-binding Protein dimerisation domain VAA_01099 PF01098 VAA_01099 VAA_01100 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel VAA_01100 PF05036 Sporulation related domain VAA_01101 PF00768 D-alanyl-D-alanine carboxypeptidase VAA_01101 PF07943 Penicillin-binding protein 5, C-terminal domain VAA_01102 PF04359 Protein of unknown function (DUF493) VAA_01103 PF03099 Biotin/lipoate A/B protein ligase family VAA_01104 PF04055 Radical SAM superfamily VAA_01104 PF16881 VAA_01104 VAA_01106 PF00464 Serine hydroxymethyltransferase VAA_01108 PF02588 VAA_01108 VAA_01109 PF02397 VAA_01109 VAA_01109 PF13727 CoA-binding domain VAA_01110 PF10082 VAA_01110 VAA_01111 PF02563 Polysaccharide biosynthesis/export protein VAA_01116 PF04932 VAA_01116 VAA_01117 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella VAA_01117 PF16458 VAA_01117 VAA_01118 PF03808 VAA_01118 VAA_01120 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_01123 PF00534 Glycosyl transferases group 1 VAA_01123 PF13439 Glycosyltransferase Family 4 VAA_01126 PF00535 Glycosyl transferase family 2 VAA_01127 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VAA_01127 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VAA_01127 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VAA_01128 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VAA_01128 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VAA_01128 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VAA_01129 PF02350 UDP-N-acetylglucosamine 2-epimerase VAA_01132 PF01451 Low molecular weight phosphotyrosine protein phosphatase VAA_01133 PF00873 AcrB/AcrD/AcrF family VAA_01135 PF16576 VAA_01135 VAA_01138 PF00512 His Kinase A (phospho-acceptor) domain VAA_01138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01139 PF00072 Response regulator receiver domain VAA_01139 PF00486 Transcriptional regulatory protein, C terminal VAA_01140 PF00128 Alpha amylase, catalytic domain VAA_01141 PF00128 Alpha amylase, catalytic domain VAA_01142 PF00367 phosphotransferase system, EIIB VAA_01142 PF02378 Phosphotransferase system, EIIC VAA_01143 PF00356 Bacterial regulatory proteins, lacI family VAA_01143 PF13377 Periplasmic binding protein-like domain VAA_01144 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme VAA_01145 PF13242 HAD-hyrolase-like VAA_01146 PF00005 ABC transporter VAA_01146 PF09383 NIL domain VAA_01147 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01149 PF03180 NLPA lipoprotein VAA_01150 PF10071 VAA_01150 VAA_01151 PF07348 Syd protein (SUKH-2) VAA_01152 PF14489 QueF-like protein VAA_01152 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VAA_01154 PF00990 GGDEF domain VAA_01155 PF03641 Possible lysine decarboxylase VAA_01155 PF11892 Domain of unknown function (DUF3412) VAA_01155 PF14793 Domain of unknown function (DUF4478) VAA_01156 PF01367 5'-3' exonuclease, C-terminal SAM fold VAA_01156 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VAA_01157 PF01728 FtsJ-like methyltransferase VAA_01158 PF04241 VAA_01158 VAA_01159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01159 PF03466 LysR substrate binding domain VAA_01160 PF02568 Thiamine biosynthesis protein (ThiI) VAA_01160 PF02926 THUMP domain VAA_01161 PF00691 OmpA family VAA_01161 PF13677 VAA_01161 VAA_01162 PF01618 VAA_01162 VAA_01164 PF02609 Exonuclease VII small subunit VAA_01165 PF00348 Polyprenyl synthetase VAA_01166 PF02779 Transketolase, pyrimidine binding domain VAA_01166 PF02780 Transketolase, C-terminal domain VAA_01166 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VAA_01167 PF00849 RNA pseudouridylate synthase VAA_01168 PF04287 tRNA pseudouridine synthase C VAA_01169 PF12069 VAA_01169 VAA_01170 PF13302 Acetyltransferase (GNAT) domain VAA_01172 PF02639 VAA_01172 VAA_01173 PF00444 Ribosomal protein L36 VAA_01174 PF01197 Ribosomal protein L31 VAA_01175 PF01980 Uncharacterised protein family UPF0066 VAA_01176 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA_01176 PF03129 Anticodon binding domain VAA_01176 PF04073 Aminoacyl-tRNA editing domain VAA_01177 PF04391 VAA_01177 VAA_01178 PF06786 VAA_01178 VAA_01179 PF14056 VAA_01179 VAA_01180 PF12286 VAA_01180 VAA_01182 PF02769 AIR synthase related protein, C-terminal domain VAA_01182 PF13507 CobB/CobQ-like glutamine amidotransferase domain VAA_01183 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01183 PF01464 Transglycosylase SLT domain VAA_01185 PF14437 VAA_01185 VAA_01187 PF00107 Zinc-binding dehydrogenase VAA_01187 PF08240 Alcohol dehydrogenase GroES-like domain VAA_01188 PF00756 Putative esterase VAA_01189 PF03806 VAA_01189 VAA_01190 PF03806 VAA_01190 VAA_01191 PF07963 Prokaryotic N-terminal methylation motif VAA_01194 PF07963 Prokaryotic N-terminal methylation motif VAA_01194 PF12019 Type II transport protein GspH VAA_01195 PF07963 Prokaryotic N-terminal methylation motif VAA_01195 PF16732 VAA_01195 VAA_01196 PF00226 DnaJ domain VAA_01196 PF00684 DnaJ central domain VAA_01196 PF01556 DnaJ C terminal domain VAA_01197 PF00012 Hsp70 protein VAA_01198 PF01025 GrpE VAA_01199 PF01513 ATP-NAD kinase VAA_01201 PF13737 VAA_01201 VAA_01202 PF01212 Beta-eliminating lyase VAA_01203 PF02463 RecF/RecN/SMC N terminal domain VAA_01204 PF04355 SmpA / OmlA family VAA_01205 PF03658 RnfH family Ubiquitin VAA_01206 PF03364 Polyketide cyclase / dehydrase and lipid transport VAA_01207 PF01668 SmpB protein VAA_01208 PF00589 Phage integrase family VAA_01208 PF13356 Domain of unknown function (DUF4102) VAA_01209 PF02384 N-6 DNA Methylase VAA_01209 PF12161 HsdM N-terminal domain VAA_01211 PF13175 AAA ATPase domain VAA_01211 PF13304 AAA domain VAA_01212 PF01420 Type I restriction modification DNA specificity domain VAA_01213 PF04851 Type III restriction enzyme, res subunit VAA_01213 PF08463 VAA_01213 VAA_01214 PF04471 Restriction endonuclease VAA_01214 PF14338 VAA_01214 VAA_01215 PF12728 Helix-turn-helix domain VAA_01217 PF04002 RadC-like JAB domain VAA_01218 PF10980 Protein of unknown function (DUF2787) VAA_01219 PF10980 Protein of unknown function (DUF2787) VAA_01228 PF05930 Prophage CP4-57 regulatory protein (AlpA) VAA_01229 PF11726 VAA_01229 VAA_01230 PF11726 VAA_01230 VAA_01231 PF11726 VAA_01231 VAA_01237 PF13649 Methyltransferase domain VAA_01238 PF04851 Type III restriction enzyme, res subunit VAA_01241 PF12833 Helix-turn-helix domain VAA_01242 PF00892 EamA-like transporter family VAA_01243 PF00990 GGDEF domain VAA_01243 PF08448 PAS fold VAA_01244 PF00455 VAA_01244 VAA_01244 PF08220 DeoR-like helix-turn-helix domain VAA_01245 PF00196 Bacterial regulatory proteins, luxR family VAA_01245 PF03472 Autoinducer binding domain VAA_01246 PF00765 Autoinducer synthetase VAA_01247 PF03061 Thioesterase superfamily VAA_01249 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01250 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01250 PF14785 Maltose transport system permease protein MalF P2 domain VAA_01251 PF13416 Bacterial extracellular solute-binding protein VAA_01252 PF00005 ABC transporter VAA_01252 PF08402 TOBE domain VAA_01253 PF00196 Bacterial regulatory proteins, luxR family VAA_01254 PF13616 PPIC-type PPIASE domain VAA_01256 PF00072 Response regulator receiver domain VAA_01256 PF01584 CheW-like domain VAA_01257 PF04237 YjbR VAA_01260 PF01381 Helix-turn-helix VAA_01260 PF12268 VAA_01260 VAA_01261 PF00990 GGDEF domain VAA_01261 PF03924 CHASE domain VAA_01262 PF12060 VAA_01262 VAA_01263 PF00892 EamA-like transporter family VAA_01264 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01264 PF03466 LysR substrate binding domain VAA_01265 PF00990 GGDEF domain VAA_01267 PF02678 Pirin VAA_01267 PF05726 Pirin C-terminal cupin domain VAA_01268 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01269 PF06865 Protein of unknown function (DUF1255) VAA_01270 PF11012 VAA_01270 VAA_01271 PF00793 DAHP synthetase I family VAA_01272 PF00005 ABC transporter VAA_01273 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01274 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01275 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01277 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA_01277 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA_01277 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA_01277 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA_01278 PF02311 AraC-like ligand binding domain VAA_01279 PF03591 VAA_01279 VAA_01280 PF05437 VAA_01280 VAA_01281 PF01557 Fumarylacetoacetate (FAA) hydrolase family VAA_012815 PF00270 DEAD/DEAH box helicase VAA_012815 PF00271 Helicase conserved C-terminal domain VAA_012817 PF13419 Haloacid dehalogenase-like hydrolase VAA_01282 PF13609 Gram-negative porin VAA_01283 PF00892 EamA-like transporter family VAA_01284 PF00462 Glutaredoxin VAA_01287 PF07690 Major Facilitator Superfamily VAA_01288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01288 PF03466 LysR substrate binding domain VAA_01290 PF00563 EAL domain VAA_01290 PF00990 GGDEF domain VAA_01291 PF01551 Peptidase family M23 VAA_01291 PF04225 Opacity-associated protein A LysM-like domain VAA_01293 PF00916 VAA_01293 VAA_01293 PF01740 STAS domain VAA_01294 PF07670 Nucleoside recognition VAA_01295 PF00174 Oxidoreductase molybdopterin binding domain VAA_01296 PF00990 GGDEF domain VAA_01297 PF00005 ABC transporter VAA_01298 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01299 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01300 PF12849 PBP superfamily domain VAA_01301 PF00892 EamA-like transporter family VAA_01302 PF00155 Aminotransferase class I and II VAA_01302 PF00392 Bacterial regulatory proteins, gntR family VAA_01303 PF13302 Acetyltransferase (GNAT) domain VAA_01304 PF07073 Modulator of Rho-dependent transcription termination (ROF) VAA_01305 PF13640 2OG-Fe(II) oxygenase superfamily VAA_01306 PF01447 Thermolysin metallopeptidase, catalytic domain VAA_01306 PF02868 Thermolysin metallopeptidase, alpha-helical domain VAA_01306 PF03413 Peptidase propeptide and YPEB domain VAA_01306 PF04151 Bacterial pre-peptidase C-terminal domain VAA_01306 PF07504 Fungalysin/Thermolysin Propeptide Motif VAA_01309 PF03922 OmpW family VAA_01310 PF00031 Cystatin domain VAA_01311 PF03067 Chitin binding domain VAA_01312 PF07690 Major Facilitator Superfamily VAA_01313 PF03009 Glycerophosphoryl diester phosphodiesterase family VAA_01314 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01314 PF03466 LysR substrate binding domain VAA_01315 PF03306 Alpha-acetolactate decarboxylase VAA_01316 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_01316 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_01316 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_01317 PF13561 Enoyl-(Acyl carrier protein) reductase VAA_01319 PF13304 AAA domain VAA_01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01320 PF03466 LysR substrate binding domain VAA_01321 PF02652 VAA_01321 VAA_01322 PF01070 FMN-dependent dehydrogenase VAA_01323 PF01565 FAD binding domain VAA_01323 PF02754 VAA_01323 VAA_01323 PF02913 FAD linked oxidases, C-terminal domain VAA_01323 PF13183 4Fe-4S dicluster domain VAA_01324 PF12833 Helix-turn-helix domain VAA_01325 PF01161 Phosphatidylethanolamine-binding protein VAA_01327 PF09831 VAA_01327 VAA_01330 PF03372 Endonuclease/Exonuclease/phosphatase family VAA_01331 PF00588 SpoU rRNA Methylase family VAA_01332 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VAA_01333 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01333 PF08447 PAS fold VAA_01334 PF04986 VAA_01334 VAA_01334 PF14319 VAA_01334 VAA_01336 PF00356 Bacterial regulatory proteins, lacI family VAA_01336 PF13377 Periplasmic binding protein-like domain VAA_01337 PF00933 Glycosyl hydrolase family 3 N terminal domain VAA_01337 PF01915 Glycosyl hydrolase family 3 C-terminal domain VAA_01338 PF00005 ABC transporter VAA_01339 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01340 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01341 PF13416 Bacterial extracellular solute-binding protein VAA_01342 PF00356 Bacterial regulatory proteins, lacI family VAA_01342 PF13377 Periplasmic binding protein-like domain VAA_01343 PF02264 LamB porin VAA_01345 PF01554 MatE VAA_01347 PF00753 Metallo-beta-lactamase superfamily VAA_01348 PF07690 Major Facilitator Superfamily VAA_01349 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01349 PF00672 HAMP domain VAA_01350 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA_01350 PF13654 AAA domain VAA_01352 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VAA_01352 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VAA_01353 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VAA_01354 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VAA_01354 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VAA_01356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01356 PF03466 LysR substrate binding domain VAA_01358 PF00753 Metallo-beta-lactamase superfamily VAA_01359 PF01323 DSBA-like thioredoxin domain VAA_01360 PF10282 Lactonase, 7-bladed beta-propeller VAA_01361 PF01042 Endoribonuclease L-PSP VAA_01362 PF08173 VAA_01362 VAA_01363 PF02322 VAA_01363 VAA_01364 PF01654 VAA_01364 VAA_01365 PF07681 VAA_01365 VAA_01366 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) VAA_01367 PF05114 Protein of unknown function (DUF692) VAA_01369 PF12706 Beta-lactamase superfamily domain VAA_01373 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01373 PF12729 VAA_01373 VAA_01374 PF07885 Ion channel VAA_01375 PF00563 EAL domain VAA_01375 PF12792 VAA_01375 VAA_01376 PF00294 pfkB family carbohydrate kinase VAA_01377 PF00367 phosphotransferase system, EIIB VAA_01377 PF02378 Phosphotransferase system, EIIC VAA_01378 PF00356 Bacterial regulatory proteins, lacI family VAA_01378 PF13377 Periplasmic binding protein-like domain VAA_01379 PF00251 Glycosyl hydrolases family 32 N-terminal domain VAA_01379 PF08244 Glycosyl hydrolases family 32 C terminal VAA_01380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01381 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01382 PF00581 Rhodanese-like domain VAA_01383 PF00005 ABC transporter VAA_01384 PF01032 FecCD transport family VAA_01385 PF01497 Periplasmic binding protein VAA_01387 PF02472 Biopolymer transport protein ExbD/TolR VAA_01388 PF01618 VAA_01388 VAA_01389 PF03544 Gram-negative bacterial TonB protein C-terminal VAA_01390 PF06228 Haem utilisation ChuX/HutX VAA_01391 PF01243 Pyridoxamine 5'-phosphate oxidase VAA_01392 PF00593 TonB dependent receptor VAA_01392 PF07715 TonB-dependent Receptor Plug Domain VAA_01393 PF00480 ROK family VAA_01394 PF00925 GTP cyclohydrolase II VAA_01395 PF09375 Imelysin VAA_01396 PF06537 VAA_01396 VAA_01397 PF09375 Imelysin VAA_01398 PF07433 VAA_01398 VAA_01399 PF01471 Putative peptidoglycan binding domain VAA_01399 PF03734 L,D-transpeptidase catalytic domain VAA_01400 PF05951 VAA_01400 VAA_01401 PF00753 Metallo-beta-lactamase superfamily VAA_01402 PF11201 VAA_01402 VAA_01404 PF01047 MarR family VAA_01405 PF02028 BCCT family transporter VAA_01406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01406 PF00672 HAMP domain VAA_01406 PF02743 Cache domain VAA_01407 PF00929 Exonuclease VAA_01408 PF00027 Cyclic nucleotide-binding domain VAA_01408 PF00571 CBS domain VAA_01408 PF03445 VAA_01408 VAA_01408 PF10335 VAA_01408 VAA_01409 PF00155 Aminotransferase class I and II VAA_01410 PF13487 HD domain VAA_01411 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01412 PF00072 Response regulator receiver domain VAA_01413 PF13466 STAS domain VAA_01414 PF01584 CheW-like domain VAA_01414 PF01627 Hpt domain VAA_01414 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01414 PF02895 Signal transducing histidine kinase, homodimeric domain VAA_01415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01415 PF02203 Tar ligand binding domain homologue VAA_01416 PF01584 CheW-like domain VAA_01417 PF01739 CheR methyltransferase, SAM binding domain VAA_01417 PF03705 CheR methyltransferase, all-alpha domain VAA_01418 PF03975 CheD chemotactic sensory transduction VAA_01419 PF00072 Response regulator receiver domain VAA_01419 PF01339 CheB methylesterase VAA_01421 PF00152 tRNA synthetases class II (D, K and N) VAA_01421 PF01336 OB-fold nucleic acid binding domain VAA_01422 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01423 PF01242 6-pyruvoyl tetrahydropterin synthase VAA_01424 PF04231 Endonuclease I VAA_01425 PF10462 Peptidase M66 VAA_01425 PF12561 VAA_01425 VAA_01426 PF03313 VAA_01426 VAA_01426 PF03315 Serine dehydratase beta chain VAA_01427 PF03222 Tryptophan/tyrosine permease family VAA_01428 PF00293 NUDIX domain VAA_01429 PF00425 chorismate binding enzyme VAA_01429 PF04715 Anthranilate synthase component I, N terminal region VAA_01430 PF05681 VAA_01430 VAA_01430 PF05683 Fumarase C-terminus VAA_01432 PF04317 VAA_01432 VAA_01433 PF05128 VAA_01433 VAA_01434 PF00158 Sigma-54 interaction domain VAA_01434 PF00989 PAS fold VAA_01435 PF13302 Acetyltransferase (GNAT) domain VAA_01436 PF11163 VAA_01436 VAA_01437 PF00990 GGDEF domain VAA_01438 PF00892 EamA-like transporter family VAA_01439 PF00842 Alanine racemase, C-terminal domain VAA_01439 PF01168 Alanine racemase, N-terminal domain VAA_01441 PF00939 Sodium:sulfate symporter transmembrane region VAA_01442 PF00027 Cyclic nucleotide-binding domain VAA_01442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01443 PF00072 Response regulator receiver domain VAA_01445 PF00313 'Cold-shock' DNA-binding domain VAA_01446 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA_01447 PF01568 Molydopterin dinucleotide binding domain VAA_01450 PF00270 DEAD/DEAH box helicase VAA_01450 PF00271 Helicase conserved C-terminal domain VAA_01451 PF00232 Glycosyl hydrolase family 1 VAA_01452 PF00356 Bacterial regulatory proteins, lacI family VAA_01452 PF13377 Periplasmic binding protein-like domain VAA_01454 PF00703 Glycosyl hydrolases family 2 VAA_01455 PF04320 VAA_01455 VAA_01457 PF00465 Iron-containing alcohol dehydrogenase VAA_01458 PF00012 Hsp70 protein VAA_01458 PF12531 VAA_01458 VAA_01459 PF00012 Hsp70 protein VAA_01460 PF10816 VAA_01460 VAA_01461 PF00990 GGDEF domain VAA_01461 PF03924 CHASE domain VAA_01462 PF00929 Exonuclease VAA_01463 PF05099 Tellurite resistance protein TerB VAA_01465 PF00270 DEAD/DEAH box helicase VAA_01465 PF00271 Helicase conserved C-terminal domain VAA_01465 PF04408 Helicase associated domain (HA2) VAA_01465 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VAA_01465 PF11898 VAA_01465 VAA_01466 PF13505 Outer membrane protein beta-barrel domain VAA_01467 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01467 PF03466 LysR substrate binding domain VAA_01468 PF07690 Major Facilitator Superfamily VAA_01471 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA_01471 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VAA_01472 PF00474 Sodium:solute symporter family VAA_01473 PF00027 Cyclic nucleotide-binding domain VAA_01473 PF00571 CBS domain VAA_01473 PF03445 VAA_01473 VAA_01473 PF10335 VAA_01473 VAA_01474 PF00929 Exonuclease VAA_01475 PF01380 SIS domain VAA_01475 PF01418 Helix-turn-helix domain, rpiR family VAA_01477 PF04962 KduI/IolB family VAA_01478 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_01478 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_01478 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_01479 PF00294 pfkB family carbohydrate kinase VAA_01479 PF09863 Uncharacterized protein conserved in bacteria (DUF2090) VAA_01480 PF01261 Xylose isomerase-like TIM barrel VAA_01487 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA_01487 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VAA_01489 PF00239 Resolvase, N terminal domain VAA_01489 PF07508 Recombinase VAA_01495 PF13419 Haloacid dehalogenase-like hydrolase VAA_01496 PF09997 VAA_01496 VAA_01497 PF00226 DnaJ domain VAA_01497 PF12339 VAA_01497 VAA_01498 PF09818 Predicted ATPase of the ABC class VAA_01499 PF00563 EAL domain VAA_01499 PF00990 GGDEF domain VAA_01499 PF01590 GAF domain VAA_01501 PF07055 Enoyl reductase FAD binding domain VAA_01501 PF12241 Trans-2-enoyl-CoA reductase catalytic region VAA_01502 PF13472 GDSL-like Lipase/Acylhydrolase family VAA_01503 PF00005 ABC transporter VAA_01504 PF02687 VAA_01504 VAA_01505 PF01266 FAD dependent oxidoreductase VAA_01506 PF02626 Allophanate hydrolase subunit 2 VAA_01507 PF02682 Allophanate hydrolase subunit 1 VAA_01508 PF03746 LamB/YcsF family VAA_01509 PF16363 VAA_01509 VAA_01510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01511 PF03222 Tryptophan/tyrosine permease family VAA_01512 PF00270 DEAD/DEAH box helicase VAA_01512 PF00271 Helicase conserved C-terminal domain VAA_01513 PF00440 Bacterial regulatory proteins, tetR family VAA_01514 PF01212 Beta-eliminating lyase VAA_01515 PF00293 NUDIX domain VAA_01516 PF07728 AAA domain (dynein-related subfamily) VAA_01516 PF12592 Protein of unknown function (DUF3763) VAA_01517 PF05762 VWA domain containing CoxE-like protein VAA_01518 PF00005 ABC transporter VAA_01519 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01520 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VAA_01521 PF00732 GMC oxidoreductase VAA_01521 PF05199 GMC oxidoreductase VAA_01522 PF00171 Aldehyde dehydrogenase family VAA_01523 PF00440 Bacterial regulatory proteins, tetR family VAA_01523 PF13977 Bacterial transcriptional repressor VAA_01524 PF01764 Lipase (class 3) VAA_01525 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VAA_01525 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VAA_01525 PF04324 BFD-like [2Fe-2S] binding domain VAA_01525 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_01526 PF13806 Rieske-like [2Fe-2S] domain VAA_01527 PF01226 Formate/nitrite transporter VAA_01528 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA_01529 PF01936 NYN domain VAA_01530 PF11661 VAA_01530 VAA_01531 PF11756 VAA_01531 VAA_01532 PF07690 Major Facilitator Superfamily VAA_01533 PF00085 Thioredoxin VAA_01534 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VAA_01534 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VAA_01535 PF02754 VAA_01535 VAA_01535 PF13183 4Fe-4S dicluster domain VAA_01536 PF00890 FAD binding domain VAA_01537 PF01266 FAD dependent oxidoreductase VAA_01537 PF04324 BFD-like [2Fe-2S] binding domain VAA_01538 PF00230 Major intrinsic protein VAA_01539 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VAA_01539 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VAA_01540 PF10688 VAA_01540 VAA_01541 PF04363 VAA_01541 VAA_01543 PF04337 Protein of unknown function, DUF480 VAA_01544 PF01541 GIY-YIG catalytic domain VAA_01545 PF13729 VAA_01545 VAA_01546 PF13407 Periplasmic binding protein domain VAA_01548 PF00072 Response regulator receiver domain VAA_01548 PF00512 His Kinase A (phospho-acceptor) domain VAA_01548 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01548 PF09308 LuxQ, periplasmic VAA_01549 PF07238 PilZ domain VAA_01551 PF16901 VAA_01551 VAA_01552 PF00368 Hydroxymethylglutaryl-coenzyme A reductase VAA_01555 PF12805 VAA_01555 VAA_01555 PF13515 VAA_01555 VAA_01556 PF00580 UvrD/REP helicase N-terminal domain VAA_01556 PF12462 VAA_01556 VAA_01556 PF13361 UvrD-like helicase C-terminal domain VAA_01557 PF02142 MGS-like domain VAA_01558 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA_01560 PF00072 Response regulator receiver domain VAA_01560 PF00512 His Kinase A (phospho-acceptor) domain VAA_01560 PF01627 Hpt domain VAA_01560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01561 PF00224 Pyruvate kinase, barrel domain VAA_01561 PF02887 Pyruvate kinase, alpha/beta domain VAA_01562 PF07690 Major Facilitator Superfamily VAA_01564 PF13343 Bacterial extracellular solute-binding protein VAA_01565 PF00512 His Kinase A (phospho-acceptor) domain VAA_01565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01566 PF00072 Response regulator receiver domain VAA_01566 PF02954 Bacterial regulatory protein, Fis family VAA_01566 PF14532 Sigma-54 interaction domain VAA_01567 PF00465 Iron-containing alcohol dehydrogenase VAA_01568 PF06719 VAA_01568 VAA_01568 PF12833 Helix-turn-helix domain VAA_01569 PF00704 Glycosyl hydrolases family 18 VAA_01569 PF06483 VAA_01569 VAA_01570 PF00483 Nucleotidyl transferase VAA_01571 PF00990 GGDEF domain VAA_01571 PF13426 PAS domain VAA_01573 PF04076 Bacterial OB fold (BOF) protein VAA_01574 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VAA_01574 PF07685 CobB/CobQ-like glutamine amidotransferase domain VAA_01575 PF13531 Bacterial extracellular solute-binding protein VAA_01576 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01577 PF00005 ABC transporter VAA_01577 PF03459 TOBE domain VAA_01578 PF11269 Protein of unknown function (DUF3069) VAA_01579 PF00072 Response regulator receiver domain VAA_01579 PF00990 GGDEF domain VAA_01581 PF00072 Response regulator receiver domain VAA_01581 PF08668 HDOD domain VAA_01582 PF00072 Response regulator receiver domain VAA_01583 PF04509 CheC-like family VAA_01584 PF00512 His Kinase A (phospho-acceptor) domain VAA_01584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01584 PF08448 PAS fold VAA_01585 PF00512 His Kinase A (phospho-acceptor) domain VAA_01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01586 PF00072 Response regulator receiver domain VAA_01586 PF00563 EAL domain VAA_01586 PF00990 GGDEF domain VAA_01587 PF00072 Response regulator receiver domain VAA_01587 PF13487 HD domain VAA_01589 PF00581 Rhodanese-like domain VAA_01589 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA_01589 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_01590 PF11127 Protein of unknown function (DUF2892) VAA_01591 PF01022 Bacterial regulatory protein, arsR family VAA_01592 PF04143 VAA_01592 VAA_01594 PF16576 VAA_01594 VAA_01595 PF00873 AcrB/AcrD/AcrF family VAA_01596 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01596 PF00990 GGDEF domain VAA_01597 PF03477 ATP cone domain VAA_01597 PF13597 Anaerobic ribonucleoside-triphosphate reductase VAA_01598 PF13353 4Fe-4S single cluster domain VAA_01599 PF00155 Aminotransferase class I and II VAA_01601 PF05618 Putative ATP-dependant zinc protease VAA_01603 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_01604 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01605 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01605 PF12911 VAA_01605 VAA_01606 PF00005 ABC transporter VAA_01606 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_01607 PF00563 EAL domain VAA_01610 PF01292 Prokaryotic cytochrome b561 VAA_01611 PF04264 YceI-like domain VAA_01612 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01613 PF13419 Haloacid dehalogenase-like hydrolase VAA_01614 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_01614 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA_01615 PF13462 Thioredoxin VAA_01616 PF00691 OmpA family VAA_01618 PF00456 Transketolase, thiamine diphosphate binding domain VAA_01618 PF02779 Transketolase, pyrimidine binding domain VAA_01618 PF02780 Transketolase, C-terminal domain VAA_01620 PF00923 Transaldolase VAA_01621 PF04198 Putative sugar-binding domain VAA_01623 PF00704 Glycosyl hydrolases family 18 VAA_01624 PF00581 Rhodanese-like domain VAA_01625 PF00899 ThiF family VAA_01626 PF00994 Probable molybdopterin binding domain VAA_01626 PF03453 MoeA N-terminal region (domain I and II) VAA_01626 PF03454 MoeA C-terminal region (domain IV) VAA_01627 PF01227 GTP cyclohydrolase I VAA_01628 PF01625 Peptide methionine sulfoxide reductase VAA_01628 PF01641 SelR domain VAA_01629 PF01268 Formate--tetrahydrofolate ligase VAA_01631 PF00588 SpoU rRNA Methylase family VAA_01632 PF11953 Domain of unknown function (DUF3470) VAA_01632 PF13187 4Fe-4S dicluster domain VAA_01633 PF01593 Flavin containing amine oxidoreductase VAA_01634 PF13419 Haloacid dehalogenase-like hydrolase VAA_01635 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA_01635 PF14760 Rnk N-terminus VAA_01636 PF00392 Bacterial regulatory proteins, gntR family VAA_01636 PF07702 UTRA domain VAA_01637 PF04954 Siderophore-interacting protein VAA_01637 PF08021 Siderophore-interacting FAD-binding domain VAA_01638 PF07690 Major Facilitator Superfamily VAA_01639 PF02698 DUF218 domain VAA_01640 PF00571 CBS domain VAA_01640 PF01226 Formate/nitrite transporter VAA_01641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_01641 PF03466 LysR substrate binding domain VAA_01642 PF06496 VAA_01642 VAA_01643 PF11398 Protein of unknown function (DUF2813) VAA_01644 PF00149 Calcineurin-like phosphoesterase VAA_01644 PF02872 5'-nucleotidase, C-terminal domain VAA_01646 PF03741 VAA_01646 VAA_01648 PF00438 S-adenosylmethionine synthetase, N-terminal domain VAA_01648 PF02772 S-adenosylmethionine synthetase, central domain VAA_01648 PF02773 S-adenosylmethionine synthetase, C-terminal domain VAA_01649 PF10263 VAA_01649 VAA_01649 PF17283 VAA_01649 VAA_01650 PF04231 Endonuclease I VAA_01651 PF04452 RNA methyltransferase VAA_01652 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VAA_01652 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VAA_01653 PF02622 Uncharacterized ACR, COG1678 VAA_01654 PF03652 Uncharacterised protein family (UPF0081) VAA_01655 PF00437 Type II/IV secretion system protein VAA_01656 PF00437 Type II/IV secretion system protein VAA_01657 PF01168 Alanine racemase, N-terminal domain VAA_01658 PF03807 NADP oxidoreductase coenzyme F420-dependent VAA_01658 PF14748 Pyrroline-5-carboxylate reductase dimerisation VAA_01659 PF02325 VAA_01659 VAA_01660 PF02594 Uncharacterised ACR, YggU family COG1872 VAA_01661 PF14467 Domain of unknown function (DUF4426) VAA_01662 PF01725 Ham1 family VAA_01663 PF04055 Radical SAM superfamily VAA_01663 PF06969 HemN C-terminal domain VAA_01664 PF04960 Glutaminase VAA_01665 PF02390 Putative methyltransferase VAA_01666 PF00633 Helix-hairpin-helix motif VAA_01666 PF00730 HhH-GPD superfamily base excision DNA repair protein VAA_01666 PF14815 NUDIX domain VAA_01667 PF04362 Bacterial Fe(2+) trafficking VAA_01668 PF01464 Transglycosylase SLT domain VAA_01668 PF11873 Domain of unknown function (DUF3393) VAA_01669 PF05099 Tellurite resistance protein TerB VAA_01670 PF03968 OstA-like protein VAA_01670 PF04453 Organic solvent tolerance protein VAA_01672 PF00639 PPIC-type PPIASE domain VAA_01672 PF09312 SurA N-terminal domain VAA_01672 PF13616 PPIC-type PPIASE domain VAA_01673 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VAA_01674 PF00398 Ribosomal RNA adenine dimethylase VAA_01675 PF04379 Protein of unknown function (DUF525) VAA_01676 PF00149 Calcineurin-like phosphoesterase VAA_01677 PF00186 Dihydrofolate reductase VAA_01678 PF12821 VAA_01678 VAA_01679 PF06738 VAA_01679 VAA_01680 PF01018 GTP1/OBG VAA_01680 PF01926 50S ribosome-binding GTPase VAA_01681 PF01016 Ribosomal L27 protein VAA_01682 PF00829 Ribosomal prokaryotic L21 protein VAA_01683 PF00348 Polyprenyl synthetase VAA_01684 PF13520 Amino acid permease VAA_01685 PF00056 lactate/malate dehydrogenase, NAD binding domain VAA_01685 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VAA_01687 PF01316 Arginine repressor, DNA binding domain VAA_01687 PF02863 Arginine repressor, C-terminal domain VAA_01688 PF16868 VAA_01688 VAA_01689 PF06808 VAA_01689 VAA_01689 PF11874 VAA_01689 VAA_01690 PF00582 Universal stress protein family VAA_01691 PF09834 VAA_01691 VAA_01696 PF07804 HipA-like C-terminal domain VAA_01696 PF13657 HipA N-terminal domain VAA_01698 PF01381 Helix-turn-helix VAA_01699 PF02384 N-6 DNA Methylase VAA_01699 PF12161 HsdM N-terminal domain VAA_01701 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VAA_01701 PF04851 Type III restriction enzyme, res subunit VAA_01701 PF11867 VAA_01701 VAA_01703 PF04245 VAA_01703 VAA_01708 PF00589 Phage integrase family VAA_01709 PF06877 Regulator of ribonuclease activity B VAA_01711 PF02274 Amidinotransferase VAA_01712 PF01523 Putative modulator of DNA gyrase VAA_01713 PF00795 Carbon-nitrogen hydrolase VAA_01714 PF13116 VAA_01714 VAA_01714 PF13502 VAA_01714 VAA_01715 PF00575 S1 RNA binding domain VAA_01715 PF10150 Ribonuclease E/G family VAA_01717 PF02545 Maf-like protein VAA_01718 PF04093 VAA_01718 VAA_01719 PF04085 rod shape-determining protein MreC VAA_01720 PF06723 MreB/Mbl protein VAA_01721 PF04519 VAA_01721 VAA_01721 PF13385 Concanavalin A-like lectin/glucanases superfamily VAA_01723 PF07963 Prokaryotic N-terminal methylation motif VAA_01724 PF07963 Prokaryotic N-terminal methylation motif VAA_01725 PF07963 Prokaryotic N-terminal methylation motif VAA_01726 PF07963 Prokaryotic N-terminal methylation motif VAA_01727 PF07963 Prokaryotic N-terminal methylation motif VAA_01729 PF00482 Type II secretion system (T2SS), protein F VAA_01730 PF00437 Type II/IV secretion system protein VAA_01730 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VAA_01732 PF13401 AAA domain VAA_01733 PF00263 VAA_01733 VAA_01733 PF07655 VAA_01733 VAA_01735 PF04612 Type II secretion system (T2SS), protein M VAA_01738 PF00563 EAL domain VAA_01738 PF00990 GGDEF domain VAA_01738 PF17157 VAA_01738 VAA_01739 PF00436 Single-strand binding protein family VAA_01740 PF00196 Bacterial regulatory proteins, luxR family VAA_01741 PF00483 Nucleotidyl transferase VAA_01742 PF00005 ABC transporter VAA_01743 PF04932 VAA_01743 VAA_01743 PF11846 VAA_01743 VAA_01743 PF15864 VAA_01743 VAA_01744 PF00571 CBS domain VAA_01744 PF01769 Divalent cation transporter VAA_01744 PF03448 MgtE intracellular N domain VAA_01746 PF00266 Aminotransferase class-V VAA_01747 PF00696 Amino acid kinase family VAA_01748 PF00809 Pterin binding enzyme VAA_01748 PF02310 B12 binding domain VAA_01748 PF02574 Homocysteine S-methyltransferase VAA_01748 PF02607 B12 binding domain VAA_01748 PF02965 Vitamin B12 dependent methionine synthase, activation domain VAA_01749 PF00999 Sodium/hydrogen exchanger family VAA_01756 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_01757 PF07369 Protein of unknown function (DUF1488) VAA_01758 PF01488 Shikimate / quinate 5-dehydrogenase VAA_01758 PF08501 Shikimate dehydrogenase substrate binding domain VAA_01759 PF01218 Coproporphyrinogen III oxidase VAA_01760 PF01300 Telomere recombination VAA_01761 PF00731 AIR carboxylase VAA_01762 PF02222 ATP-grasp domain VAA_01764 PF01396 VAA_01764 VAA_01765 PF04361 VAA_01765 VAA_01766 PF02481 DNA recombination-mediator protein A VAA_01767 PF02481 DNA recombination-mediator protein A VAA_01768 PF01476 LysM domain VAA_01769 PF01327 Polypeptide deformylase VAA_01770 PF00551 Formyl transferase VAA_01770 PF02911 Formyl transferase, C-terminal domain VAA_01771 PF01029 NusB family VAA_01771 PF01189 NOL1/NOP2/sun family VAA_01772 PF02080 TrkA-C domain VAA_01772 PF02254 TrkA-N domain VAA_01773 PF02386 Cation transport protein VAA_01774 PF11355 VAA_01774 VAA_01775 PF03006 VAA_01775 VAA_01778 PF06288 Protein of unknown function (DUF1040) VAA_01779 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VAA_01779 PF12801 VAA_01779 VAA_01779 PF13746 4Fe-4S dicluster domain VAA_01780 PF01636 Phosphotransferase enzyme family VAA_01781 PF01323 DSBA-like thioredoxin domain VAA_01783 PF04851 Type III restriction enzyme, res subunit VAA_01783 PF13307 Helicase C-terminal domain VAA_01784 PF11523 Protein of unknown function (DUF3223) VAA_01785 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VAA_01786 PF01810 VAA_01786 VAA_01787 PF01235 VAA_01787 VAA_01790 PF01546 Peptidase family M20/M25/M40 VAA_01790 PF07687 Peptidase dimerisation domain VAA_01791 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA_01791 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal VAA_01792 PF04209 homogentisate 1,2-dioxygenase VAA_01793 PF01557 Fumarylacetoacetate (FAA) hydrolase family VAA_01794 PF13417 Glutathione S-transferase, N-terminal domain VAA_01794 PF14497 Glutathione S-transferase, C-terminal domain VAA_01795 PF04151 Bacterial pre-peptidase C-terminal domain VAA_01795 PF04389 Peptidase family M28 VAA_01796 PF02517 CAAX protease self-immunity VAA_01797 PF03009 Glycerophosphoryl diester phosphodiesterase family VAA_01798 PF00753 Metallo-beta-lactamase superfamily VAA_01799 PF11932 VAA_01799 VAA_01800 PF01618 VAA_01800 VAA_01801 PF01618 VAA_01801 VAA_01802 PF02472 Biopolymer transport protein ExbD/TolR VAA_01803 PF03544 Gram-negative bacterial TonB protein C-terminal VAA_01804 PF13181 Tetratricopeptide repeat VAA_01805 PF01734 Patatin-like phospholipase VAA_01807 PF01554 MatE VAA_01808 PF14255 VAA_01808 VAA_01809 PF03881 Fructosamine kinase VAA_01810 PF12290 VAA_01810 VAA_01811 PF00877 NlpC/P60 family VAA_01812 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01813 PF04116 VAA_01813 VAA_01815 PF00480 ROK family VAA_01816 PF11173 VAA_01816 VAA_01817 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VAA_01818 PF12804 MobA-like NTP transferase domain VAA_01820 PF00005 ABC transporter VAA_01820 PF08402 TOBE domain VAA_01822 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01823 PF13343 Bacterial extracellular solute-binding protein VAA_01824 PF07690 Major Facilitator Superfamily VAA_01825 PF05231 VAA_01825 VAA_01825 PF07730 Histidine kinase VAA_01826 PF00072 Response regulator receiver domain VAA_01826 PF00196 Bacterial regulatory proteins, luxR family VAA_01828 PF00005 ABC transporter VAA_01828 PF12848 ABC transporter VAA_01829 PF00909 Ammonium Transporter Family VAA_01830 PF02146 Sir2 family VAA_01831 PF13416 Bacterial extracellular solute-binding protein VAA_01832 PF13416 Bacterial extracellular solute-binding protein VAA_01833 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01834 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01835 PF00005 ABC transporter VAA_01835 PF08402 TOBE domain VAA_01837 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VAA_01838 PF11205 VAA_01838 VAA_01839 PF01171 PP-loop family VAA_01840 PF00582 Universal stress protein family VAA_01841 PF00027 Cyclic nucleotide-binding domain VAA_01841 PF13545 Crp-like helix-turn-helix domain VAA_01844 PF03597 VAA_01844 VAA_01845 PF00122 E1-E2 ATPase VAA_01845 PF00403 Heavy-metal-associated domain VAA_01845 PF00702 haloacid dehalogenase-like hydrolase VAA_01845 PF12156 VAA_01845 VAA_01846 PF05751 VAA_01846 VAA_01847 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VAA_01847 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VAA_01848 PF05545 VAA_01848 VAA_01849 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO VAA_01850 PF00115 Cytochrome C and Quinol oxidase polypeptide I VAA_01854 PF12321 VAA_01854 VAA_01855 PF06303 Organiser of macrodomain of Terminus of chromosome VAA_01855 PF17414 VAA_01855 VAA_01857 PF07977 FabA-like domain VAA_01859 PF11949 VAA_01859 VAA_01860 PF00005 ABC transporter VAA_01860 PF12848 ABC transporter VAA_01860 PF16326 VAA_01860 VAA_01861 PF05768 Glutaredoxin-like domain (DUF836) VAA_01862 PF01170 Putative RNA methylase family UPF0020 VAA_01862 PF02926 THUMP domain VAA_01862 PF10672 S-adenosylmethionine-dependent methyltransferase VAA_01863 PF07126 VAA_01863 VAA_01864 PF01180 Dihydroorotate dehydrogenase VAA_01865 PF05088 VAA_01865 VAA_01867 PF11197 VAA_01867 VAA_01868 PF01433 Peptidase family M1 VAA_01868 PF11940 Domain of unknown function (DUF3458) VAA_01868 PF17432 VAA_01868 VAA_01871 PF00595 PDZ domain (Also known as DHR or GLGF) VAA_01871 PF03572 Peptidase family S41 VAA_01871 PF08180 VAA_01871 VAA_01871 PF11818 VAA_01871 VAA_01872 PF04352 ProQ/FINO family VAA_01872 PF17516 VAA_01872 VAA_01873 PF13185 GAF domain VAA_01874 PF00005 ABC transporter VAA_01874 PF00664 ABC transporter transmembrane region VAA_01875 PF04403 VAA_01875 VAA_01876 PF02470 VAA_01876 VAA_01877 PF02470 VAA_01877 VAA_01878 PF01189 NOL1/NOP2/sun family VAA_01878 PF13636 pre-rRNA processing and ribosome biogenesis VAA_01878 PF17125 VAA_01878 VAA_01879 PF13509 S1 domain VAA_01881 PF14539 Domain of unknown function (DUF4442) VAA_01882 PF02896 PEP-utilising enzyme, TIM barrel domain VAA_01883 PF00793 DAHP synthetase I family VAA_01884 PF04461 Protein of unknown function (DUF520) VAA_01885 PF13181 Tetratricopeptide repeat VAA_01885 PF13374 Tetratricopeptide repeat VAA_01887 PF10414 Sirohaem synthase dimerisation region VAA_01887 PF13241 Putative NAD(P)-binding VAA_01887 PF14824 Sirohaem biosynthesis protein central VAA_01888 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_01889 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01890 PF00528 Binding-protein-dependent transport system inner membrane component VAA_01891 PF00005 ABC transporter VAA_01892 PF01027 Inhibitor of apoptosis-promoting Bax1 VAA_01893 PF04358 DsrC like protein VAA_01894 PF00708 Acylphosphatase VAA_01895 PF10672 S-adenosylmethionine-dependent methyltransferase VAA_01896 PF04986 VAA_01896 VAA_01898 PF13416 Bacterial extracellular solute-binding protein VAA_01899 PF05127 Helicase VAA_01899 PF13718 GNAT acetyltransferase 2 VAA_01900 PF13466 STAS domain VAA_01901 PF00072 Response regulator receiver domain VAA_01902 PF01584 CheW-like domain VAA_01902 PF01627 Hpt domain VAA_01902 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_01902 PF02895 Signal transducing histidine kinase, homodimeric domain VAA_01903 PF01584 CheW-like domain VAA_01904 PF01584 CheW-like domain VAA_01905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01905 PF00672 HAMP domain VAA_01906 PF01739 CheR methyltransferase, SAM binding domain VAA_01906 PF03705 CheR methyltransferase, all-alpha domain VAA_01907 PF03975 CheD chemotactic sensory transduction VAA_01908 PF00072 Response regulator receiver domain VAA_01908 PF01339 CheB methylesterase VAA_01909 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01910 PF13466 STAS domain VAA_01912 PF00072 Response regulator receiver domain VAA_01912 PF07228 Stage II sporulation protein E (SpoIIE) VAA_01913 PF03961 VAA_01913 VAA_01914 PF00005 ABC transporter VAA_01914 PF00664 ABC transporter transmembrane region VAA_01915 PF00563 EAL domain VAA_01915 PF00990 GGDEF domain VAA_01915 PF16448 VAA_01915 VAA_01916 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP VAA_01917 PF13437 HlyD family secretion protein VAA_01917 PF13533 Biotin-lipoyl like VAA_01918 PF01243 Pyridoxamine 5'-phosphate oxidase VAA_01918 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VAA_01919 PF00196 Bacterial regulatory proteins, luxR family VAA_01919 PF08448 PAS fold VAA_01920 PF03781 Sulfatase-modifying factor enzyme 1 VAA_01920 PF08308 VAA_01920 VAA_01921 PF08308 VAA_01921 VAA_01922 PF12833 Helix-turn-helix domain VAA_01923 PF00171 Aldehyde dehydrogenase family VAA_01923 PF01619 Proline dehydrogenase VAA_01923 PF14850 DNA-binding domain of Proline dehydrogenase VAA_01925 PF00474 Sodium:solute symporter family VAA_01927 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01927 PF02743 Cache domain VAA_01928 PF01037 AsnC family VAA_01928 PF13412 Winged helix-turn-helix DNA-binding VAA_01929 PF00171 Aldehyde dehydrogenase family VAA_01930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_01930 PF12793 VAA_01930 VAA_01933 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VAA_01934 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01934 PF13682 Chemoreceptor zinc-binding domain VAA_01935 PF07308 VAA_01935 VAA_01936 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01936 PF17200 VAA_01936 VAA_01937 PF10928 Protein of unknown function (DUF2810) VAA_01938 PF00196 Bacterial regulatory proteins, luxR family VAA_01939 PF00343 Carbohydrate phosphorylase VAA_01940 PF02446 4-alpha-glucanotransferase VAA_01941 PF00128 Alpha amylase, catalytic domain VAA_01941 PF02806 Alpha amylase, C-terminal all-beta domain VAA_01941 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA_01943 PF05638 Protein of unknown function (DUF796) VAA_01944 PF01471 Putative peptidoglycan binding domain VAA_01944 PF05954 Phage late control gene D protein (GPD) VAA_01944 PF16754 VAA_01944 VAA_01946 PF11216 VAA_01946 VAA_01948 PF07219 VAA_01948 VAA_01948 PF07719 Tetratricopeptide repeat VAA_01949 PF04375 VAA_01949 VAA_01950 PF02602 Uroporphyrinogen-III synthase HemD VAA_01951 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VAA_01951 PF03900 Porphobilinogen deaminase, C-terminal domain VAA_01952 PF01295 VAA_01952 VAA_01952 PF12633 VAA_01952 VAA_01953 PF01491 Frataxin-like domain VAA_01954 PF13627 VAA_01954 VAA_01955 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VAA_01955 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VAA_01956 PF01678 Diaminopimelate epimerase VAA_01957 PF04340 Protein of unknown function, DUF484 VAA_01958 PF00589 Phage integrase family VAA_01958 PF02899 Phage integrase, N-terminal SAM-like domain VAA_01959 PF13419 Haloacid dehalogenase-like hydrolase VAA_01960 PF03942 VAA_01960 VAA_01962 PF08282 haloacid dehalogenase-like hydrolase VAA_01963 PF12146 Putative lysophospholipase VAA_01964 PF01810 VAA_01964 VAA_01965 PF00563 EAL domain VAA_01965 PF08668 HDOD domain VAA_01966 PF00210 Ferritin-like domain VAA_01967 PF01757 VAA_01967 VAA_01968 PF10694 Protein of unknown function (DUF2500) VAA_01972 PF07947 VAA_01972 VAA_01973 PF01914 VAA_01973 VAA_01974 PF12729 VAA_01974 VAA_01975 PF00521 DNA gyrase/topoisomerase IV, subunit A VAA_01975 PF03989 DNA gyrase C-terminal domain, beta-propeller VAA_01976 PF13489 Methyltransferase domain VAA_01977 PF00317 Ribonucleotide reductase, all-alpha domain VAA_01977 PF03477 ATP cone domain VAA_01979 PF00268 Ribonucleotide reductase, small chain VAA_01980 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_01982 PF00994 Probable molybdopterin binding domain VAA_01983 PF13084 VAA_01983 VAA_01985 PF13740 ACT domain VAA_01987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_01987 PF00672 HAMP domain VAA_01987 PF17200 VAA_01987 VAA_01988 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VAA_01989 PF03435 Saccharopine dehydrogenase VAA_01989 PF16653 VAA_01989 VAA_01990 PF00202 Aminotransferase class-III VAA_01990 PF00282 Pyridoxal-dependent decarboxylase conserved domain VAA_01991 PF06965 Na+/H+ antiporter 1 VAA_01992 PF07143 Hydroxyneurosporene synthase (CrtC) VAA_01992 PF17186 VAA_01992 VAA_01993 PF02687 VAA_01993 VAA_01994 PF00005 ABC transporter VAA_01995 PF01554 MatE VAA_01996 PF11066 VAA_01996 VAA_01996 PF13460 NADH(P)-binding VAA_01997 PF11140 VAA_01997 VAA_01998 PF07690 Major Facilitator Superfamily VAA_01999 PF00849 RNA pseudouridylate synthase VAA_01999 PF01479 S4 domain VAA_02000 PF00271 Helicase conserved C-terminal domain VAA_02000 PF04851 Type III restriction enzyme, res subunit VAA_02002 PF00072 Response regulator receiver domain VAA_02002 PF00486 Transcriptional regulatory protein, C terminal VAA_02003 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02004 PF01386 Ribosomal L25p family VAA_02005 PF12614 VAA_02005 VAA_02006 PF07238 PilZ domain VAA_02007 PF00270 DEAD/DEAH box helicase VAA_02007 PF00271 Helicase conserved C-terminal domain VAA_02008 PF01810 VAA_02008 VAA_02010 PF13737 VAA_02010 VAA_02011 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02013 PF03401 Tripartite tricarboxylate transporter family receptor VAA_02014 PF07331 VAA_02014 VAA_02015 PF01970 VAA_02015 VAA_02016 PF08218 Citrate lyase ligase C-terminal domain VAA_02016 PF13673 Acetyltransferase (GNAT) domain VAA_02017 PF03802 VAA_02017 VAA_02019 PF04277 VAA_02019 VAA_02020 PF00364 Biotin-requiring enzyme VAA_02020 PF00682 HMGL-like VAA_02020 PF02436 Conserved carboxylase domain VAA_02021 PF03977 VAA_02021 VAA_02022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02022 PF17203 VAA_02022 VAA_02023 PF00072 Response regulator receiver domain VAA_02023 PF12431 VAA_02023 VAA_02025 PF06857 VAA_02025 VAA_02026 PF03328 HpcH/HpaI aldolase/citrate lyase family VAA_02027 PF04223 Citrate lyase, alpha subunit (CitF) VAA_02028 PF03802 VAA_02028 VAA_02029 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VAA_02033 PF01238 Phosphomannose isomerase type I VAA_02034 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02034 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_02034 PF02378 Phosphotransferase system, EIIC VAA_02035 PF12833 Helix-turn-helix domain VAA_02036 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02037 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_02038 PF03061 Thioesterase superfamily VAA_02039 PF02001 VAA_02039 VAA_02040 PF04400 VAA_02040 VAA_02041 PF02579 Dinitrogenase iron-molybdenum cofactor VAA_02042 PF13407 Periplasmic binding protein domain VAA_02043 PF00005 ABC transporter VAA_02044 PF02653 VAA_02044 VAA_02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02045 PF03466 LysR substrate binding domain VAA_02046 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VAA_02047 PF01219 Prokaryotic diacylglycerol kinase VAA_02048 PF00512 His Kinase A (phospho-acceptor) domain VAA_02048 PF00672 HAMP domain VAA_02048 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02049 PF00072 Response regulator receiver domain VAA_02049 PF00486 Transcriptional regulatory protein, C terminal VAA_02052 PF07331 VAA_02052 VAA_02053 PF03401 Tripartite tricarboxylate transporter family receptor VAA_02056 PF00392 Bacterial regulatory proteins, gntR family VAA_02056 PF07729 FCD domain VAA_02057 PF13714 Phosphoenolpyruvate phosphomutase VAA_02058 PF00285 Citrate synthase VAA_02060 PF00330 Aconitase family (aconitate hydratase) VAA_02060 PF00694 Aconitase C-terminal domain VAA_02061 PF04303 PrpF protein VAA_02062 PF00501 AMP-binding enzyme VAA_02062 PF13193 AMP-binding enzyme C-terminal domain VAA_02062 PF16177 VAA_02062 VAA_02063 PF00583 Acetyltransferase (GNAT) family VAA_02064 PF00293 NUDIX domain VAA_02064 PF01569 PAP2 superfamily VAA_02065 PF08282 haloacid dehalogenase-like hydrolase VAA_02066 PF13394 4Fe-4S single cluster domain VAA_02067 PF06508 Queuosine biosynthesis protein QueC VAA_02068 PF11042 VAA_02068 VAA_02069 PF00691 OmpA family VAA_02070 PF02321 Outer membrane efflux protein VAA_02071 PF00353 Hemolysin-type calcium-binding repeat (2 copies) VAA_02076 PF00501 AMP-binding enzyme VAA_02076 PF00668 Condensation domain VAA_02077 PF03621 MbtH-like protein VAA_02078 PF00756 Putative esterase VAA_02078 PF11806 Domain of unknown function (DUF3327) VAA_02079 PF00593 TonB dependent receptor VAA_02079 PF07715 TonB-dependent Receptor Plug Domain VAA_02080 PF01648 4'-phosphopantetheinyl transferase superfamily VAA_02081 PF02508 VAA_02081 VAA_02082 PF04060 Putative Fe-S cluster VAA_02082 PF14697 4Fe-4S dicluster domain VAA_02083 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VAA_02083 PF10531 SLBB domain VAA_02083 PF12838 4Fe-4S dicluster domain VAA_02083 PF13375 RnfC Barrel sandwich hybrid domain VAA_02084 PF03116 VAA_02084 VAA_02085 PF04205 FMN-binding domain VAA_02086 PF02508 VAA_02086 VAA_02087 PF00633 Helix-hairpin-helix motif VAA_02087 PF00730 HhH-GPD superfamily base excision DNA repair protein VAA_02087 PF10576 Iron-sulfur binding domain of endonuclease III VAA_02088 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA_02089 PF00691 OmpA family VAA_02090 PF00929 Exonuclease VAA_02091 PF03553 VAA_02091 VAA_02091 PF13726 VAA_02091 VAA_02092 PF00156 Phosphoribosyl transferase domain VAA_02092 PF13522 Glutamine amidotransferase domain VAA_02093 PF02674 VAA_02093 VAA_02094 PF05036 Sporulation related domain VAA_02095 PF02875 Mur ligase family, glutamate ligase domain VAA_02095 PF08245 Mur ligase middle domain VAA_02096 PF01039 Carboxyl transferase domain VAA_02097 PF01416 tRNA pseudouridine synthase VAA_02099 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA_02099 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VAA_02100 PF00367 phosphotransferase system, EIIB VAA_02100 PF02378 Phosphotransferase system, EIIC VAA_02102 PF01979 Amidohydrolase family VAA_02103 PF00480 ROK family VAA_02104 PF00999 Sodium/hydrogen exchanger family VAA_02104 PF02254 TrkA-N domain VAA_02105 PF00733 Asparagine synthase VAA_02105 PF13537 Glutamine amidotransferase domain VAA_02106 PF02357 Transcription termination factor nusG VAA_02107 PF00854 POT family VAA_02108 PF00762 Ferrochelatase VAA_02109 PF00406 Adenylate kinase VAA_02109 PF05191 Adenylate kinase, active site lid VAA_02110 PF00183 Hsp90 protein VAA_02110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02111 PF00486 Transcriptional regulatory protein, C terminal VAA_02112 PF17323 VAA_02112 VAA_02113 PF10262 Rdx family VAA_02114 PF12850 Calcineurin-like phosphoesterase superfamily domain VAA_02115 PF01370 NAD dependent epimerase/dehydratase family VAA_02115 PF08338 Domain of unknown function (DUF1731) VAA_02116 PF00085 Thioredoxin VAA_02116 PF14559 Tetratricopeptide repeat VAA_02116 PF14561 Tetratricopeptide repeat VAA_02118 PF01145 SPFH domain / Band 7 family VAA_02119 PF01957 NfeD-like C-terminal, partner-binding VAA_02120 PF00376 MerR family regulatory protein VAA_02120 PF09278 MerR, DNA binding VAA_02123 PF00563 EAL domain VAA_02124 PF10672 S-adenosylmethionine-dependent methyltransferase VAA_02125 PF00849 RNA pseudouridylate synthase VAA_02126 PF00209 Sodium:neurotransmitter symporter family VAA_02127 PF13091 PLD-like domain VAA_02127 PF13396 VAA_02127 VAA_02128 PF01053 Cys/Met metabolism PLP-dependent enzyme VAA_02129 PF03352 Methyladenine glycosylase VAA_02130 PF04024 VAA_02130 VAA_02131 PF06667 VAA_02131 VAA_02132 PF04012 VAA_02132 VAA_02133 PF00158 Sigma-54 interaction domain VAA_02133 PF02954 Bacterial regulatory protein, Fis family VAA_02134 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_02135 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02136 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02136 PF12911 VAA_02136 VAA_02138 PF00005 ABC transporter VAA_02138 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_02139 PF00005 ABC transporter VAA_02141 PF11042 VAA_02141 VAA_02142 PF01368 DHH family VAA_02142 PF02833 DHHA2 domain VAA_02143 PF02065 Melibiase VAA_02145 PF00384 Molybdopterin oxidoreductase VAA_02145 PF01568 Molydopterin dinucleotide binding domain VAA_02146 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA_02147 PF06796 VAA_02147 VAA_02148 PF01226 Formate/nitrite transporter VAA_02149 PF06146 VAA_02149 VAA_02150 PF05232 VAA_02150 VAA_02151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02151 PF03466 LysR substrate binding domain VAA_02152 PF13460 NADH(P)-binding VAA_02153 PF02698 DUF218 domain VAA_02154 PF00265 Thymidine kinase VAA_02155 PF00152 tRNA synthetases class II (D, K and N) VAA_02155 PF01336 OB-fold nucleic acid binding domain VAA_02155 PF02938 GAD domain VAA_02156 PF01904 Protein of unknown function DUF72 VAA_02157 PF05925 Enterobacterial virulence protein IpgD VAA_02159 PF13649 Methyltransferase domain VAA_02160 PF08003 Protein of unknown function (DUF1698) VAA_02161 PF05618 Putative ATP-dependant zinc protease VAA_02162 PF14400 VAA_02162 VAA_02162 PF14402 VAA_02162 VAA_02163 PF14397 VAA_02163 VAA_02164 PF04310 MukB N-terminal VAA_02164 PF13558 Putative exonuclease SbcCD, C subunit VAA_02164 PF16330 VAA_02164 VAA_02165 PF04288 MukE-like family VAA_02166 PF03882 KicB killing factor VAA_02166 PF17192 VAA_02166 VAA_02166 PF17193 VAA_02166 VAA_02167 PF13847 Methyltransferase domain VAA_02168 PF02698 DUF218 domain VAA_02169 PF00072 Response regulator receiver domain VAA_02169 PF00486 Transcriptional regulatory protein, C terminal VAA_02170 PF02613 Nitrate reductase delta subunit VAA_02171 PF00356 Bacterial regulatory proteins, lacI family VAA_02171 PF13377 Periplasmic binding protein-like domain VAA_02172 PF04993 TfoX N-terminal domain VAA_02172 PF04994 TfoX C-terminal domain VAA_02173 PF09335 VAA_02173 VAA_02174 PF09413 Domain of unknown function (DUF2007) VAA_02175 PF00561 alpha/beta hydrolase fold VAA_02176 PF00534 Glycosyl transferases group 1 VAA_02176 PF08323 Starch synthase catalytic domain VAA_02177 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_02177 PF00483 Nucleotidyl transferase VAA_02178 PF01131 DNA topoisomerase VAA_02178 PF01396 VAA_02178 VAA_02178 PF01751 Toprim domain VAA_02178 PF08272 Topoisomerase I zinc-ribbon-like VAA_02181 PF10692 Protein of unknown function (DUF2498) VAA_02182 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VAA_02183 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VAA_02184 PF04376 VAA_02184 VAA_02184 PF04377 VAA_02184 VAA_02185 PF01176 Translation initiation factor 1A / IF-1 VAA_02186 PF00004 ATPase family associated with various cellular activities (AAA) VAA_02186 PF02861 Clp amino terminal domain VAA_02186 PF07724 AAA domain (Cdc48 subfamily) VAA_02186 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_02187 PF02617 ATP-dependent Clp protease adaptor protein ClpS VAA_02189 PF00313 'Cold-shock' DNA-binding domain VAA_02190 PF03971 Monomeric isocitrate dehydrogenase VAA_02191 PF00849 RNA pseudouridylate synthase VAA_02192 PF01502 Phosphoribosyl-AMP cyclohydrolase VAA_02192 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VAA_02193 PF00977 Histidine biosynthesis protein VAA_02194 PF00977 Histidine biosynthesis protein VAA_02195 PF00117 Glutamine amidotransferase class-I VAA_02196 PF00475 Imidazoleglycerol-phosphate dehydratase VAA_02196 PF08645 Polynucleotide kinase 3 phosphatase VAA_02198 PF00155 Aminotransferase class I and II VAA_02199 PF00815 Histidinol dehydrogenase VAA_02200 PF01634 ATP phosphoribosyltransferase VAA_02200 PF08029 HisG, C-terminal domain VAA_02202 PF03553 VAA_02202 VAA_02203 PF00816 H-NS histone family VAA_02204 PF00294 pfkB family carbohydrate kinase VAA_02206 PF03054 tRNA methyl transferase VAA_02207 PF04356 Protein of unknown function (DUF489) VAA_02208 PF00206 Lyase VAA_02208 PF08328 Adenylosuccinate lyase C-terminal VAA_02209 PF00266 Aminotransferase class-V VAA_02210 PF06097 VAA_02210 VAA_02211 PF00027 Cyclic nucleotide-binding domain VAA_02211 PF00512 His Kinase A (phospho-acceptor) domain VAA_02211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02212 PF00072 Response regulator receiver domain VAA_02214 PF04993 TfoX N-terminal domain VAA_02214 PF04994 TfoX C-terminal domain VAA_02215 PF08668 HDOD domain VAA_02216 PF03956 VAA_02216 VAA_02218 PF00282 Pyridoxal-dependent decarboxylase conserved domain VAA_02219 PF01380 SIS domain VAA_02219 PF01418 Helix-turn-helix domain, rpiR family VAA_02220 PF00465 Iron-containing alcohol dehydrogenase VAA_02221 PF00462 Glutaredoxin VAA_02222 PF02080 TrkA-C domain VAA_02222 PF06826 VAA_02222 VAA_02224 PF01259 SAICAR synthetase VAA_02226 PF00390 Malic enzyme, N-terminal domain VAA_02226 PF03949 Malic enzyme, NAD binding domain VAA_02227 PF11872 VAA_02227 VAA_02228 PF02698 DUF218 domain VAA_02229 PF00266 Aminotransferase class-V VAA_02230 PF10014 2OG-Fe dioxygenase VAA_02231 PF00990 GGDEF domain VAA_02232 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_02233 PF00005 ABC transporter VAA_02233 PF00664 ABC transporter transmembrane region VAA_02234 PF00005 ABC transporter VAA_02234 PF00664 ABC transporter transmembrane region VAA_02237 PF13531 Bacterial extracellular solute-binding protein VAA_02238 PF03640 VAA_02238 VAA_02239 PF04542 Sigma-70 region 2 VAA_02239 PF08281 Sigma-70, region 4 VAA_02241 PF00563 EAL domain VAA_02241 PF00990 GGDEF domain VAA_02242 PF00849 RNA pseudouridylate synthase VAA_02242 PF01479 S4 domain VAA_02243 PF01300 Telomere recombination VAA_02246 PF08056 VAA_02246 VAA_02247 PF00425 chorismate binding enzyme VAA_02247 PF04715 Anthranilate synthase component I, N terminal region VAA_02248 PF00117 Glutamine amidotransferase class-I VAA_02249 PF00591 Glycosyl transferase family, a/b domain VAA_02249 PF02885 Glycosyl transferase family, helical bundle domain VAA_02250 PF00218 Indole-3-glycerol phosphate synthase VAA_02250 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VAA_02251 PF00291 Pyridoxal-phosphate dependent enzyme VAA_02252 PF00290 Tryptophan synthase alpha chain VAA_02253 PF00375 Sodium:dicarboxylate symporter family VAA_02256 PF04279 VAA_02256 VAA_02258 PF03061 Thioesterase superfamily VAA_02259 PF03795 YCII-related domain VAA_02260 PF16549 VAA_02260 VAA_02261 PF01717 Cobalamin-independent synthase, Catalytic domain VAA_02261 PF08267 Cobalamin-independent synthase, N-terminal domain VAA_02262 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02262 PF03466 LysR substrate binding domain VAA_02263 PF14056 VAA_02263 VAA_02265 PF00563 EAL domain VAA_02265 PF00571 CBS domain VAA_02265 PF00989 PAS fold VAA_02267 PF04055 Radical SAM superfamily VAA_02267 PF08497 VAA_02267 VAA_02267 PF11842 VAA_02267 VAA_02268 PF12915 VAA_02268 VAA_02269 PF16036 VAA_02269 VAA_02270 PF11086 VAA_02270 VAA_02271 PF02353 Mycolic acid cyclopropane synthetase VAA_02273 PF01593 Flavin containing amine oxidoreductase VAA_02274 PF00106 short chain dehydrogenase VAA_02275 PF12680 SnoaL-like domain VAA_02276 PF01435 Peptidase family M48 VAA_02278 PF01580 FtsK/SpoIIIE family VAA_02278 PF09397 Ftsk gamma domain VAA_02278 PF13491 VAA_02278 VAA_02280 PF01037 AsnC family VAA_02280 PF13412 Winged helix-turn-helix DNA-binding VAA_02281 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VAA_02281 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VAA_02282 PF13679 VAA_02282 VAA_02285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA_02286 PF13176 Tetratricopeptide repeat VAA_02286 PF13181 Tetratricopeptide repeat VAA_02287 PF06305 VAA_02287 VAA_02288 PF00216 Bacterial DNA-binding protein VAA_02289 PF00575 S1 RNA binding domain VAA_02290 PF02224 Cytidylate kinase VAA_02292 PF12836 Helix-hairpin-helix motif VAA_02293 PF13616 PPIC-type PPIASE domain VAA_02293 PF13624 SurA N-terminal domain VAA_02294 PF00216 Bacterial DNA-binding protein VAA_02295 PF00004 ATPase family associated with various cellular activities (AAA) VAA_02295 PF02190 ATP-dependent protease La (LON) domain VAA_02295 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA_02296 PF06689 ClpX C4-type zinc finger VAA_02296 PF07724 AAA domain (Cdc48 subfamily) VAA_02296 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_02297 PF00574 Clp protease VAA_02298 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_02298 PF05697 Bacterial trigger factor protein (TF) VAA_02298 PF05698 Bacterial trigger factor protein (TF) C-terminus VAA_02300 PF00512 His Kinase A (phospho-acceptor) domain VAA_02300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02300 PF02743 Cache domain VAA_02301 PF00072 Response regulator receiver domain VAA_02301 PF00158 Sigma-54 interaction domain VAA_02301 PF02954 Bacterial regulatory protein, Fis family VAA_02302 PF06808 VAA_02302 VAA_02303 PF04290 VAA_02303 VAA_02305 PF01547 Bacterial extracellular solute-binding protein VAA_02306 PF00672 HAMP domain VAA_02306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02307 PF00072 Response regulator receiver domain VAA_02307 PF00486 Transcriptional regulatory protein, C terminal VAA_02308 PF02696 VAA_02308 VAA_02309 PF03313 VAA_02309 VAA_02309 PF03315 Serine dehydratase beta chain VAA_02311 PF00270 DEAD/DEAH box helicase VAA_02311 PF00271 Helicase conserved C-terminal domain VAA_02312 PF00128 Alpha amylase, catalytic domain VAA_02313 PF02028 BCCT family transporter VAA_02314 PF02574 Homocysteine S-methyltransferase VAA_02315 PF01794 VAA_02315 VAA_02315 PF08022 VAA_02315 VAA_02316 PF09905 Uncharacterized conserved protein (DUF2132) VAA_02320 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VAA_02320 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VAA_02321 PF00704 Glycosyl hydrolases family 18 VAA_02322 PF01773 Na+ dependent nucleoside transporter N-terminus VAA_02322 PF07662 Na+ dependent nucleoside transporter C-terminus VAA_02322 PF07670 Nucleoside recognition VAA_02323 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02323 PF03466 LysR substrate binding domain VAA_02324 PF13406 Transglycosylase SLT domain VAA_02325 PF05166 YcgL domain VAA_02326 PF03775 Septum formation inhibitor MinC, C-terminal domain VAA_02326 PF05209 Septum formation inhibitor MinC, N-terminal domain VAA_02327 PF13614 AAA domain VAA_02328 PF03776 Septum formation topological specificity factor MinE VAA_02329 PF00570 HRDC domain VAA_02329 PF01612 3'-5' exonuclease VAA_02330 PF00501 AMP-binding enzyme VAA_02330 PF13193 AMP-binding enzyme C-terminal domain VAA_02331 PF12697 Alpha/beta hydrolase family VAA_02332 PF03843 VAA_02332 VAA_02334 PF00814 Glycoprotease family VAA_02335 PF00270 DEAD/DEAH box helicase VAA_02335 PF13307 Helicase C-terminal domain VAA_02337 PF00551 Formyl transferase VAA_02337 PF01842 ACT domain VAA_02338 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VAA_02338 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_02339 PF01343 Peptidase family S49 VAA_02340 PF00710 Asparaginase VAA_02341 PF07023 VAA_02341 VAA_02342 PF11207 VAA_02342 VAA_02343 PF01641 SelR domain VAA_02344 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_02344 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA_02345 PF01263 Aldose 1-epimerase VAA_02346 PF13847 Methyltransferase domain VAA_02347 PF04187 Protein of unknown function, DUF399 VAA_02349 PF03692 VAA_02349 VAA_02350 PF03692 VAA_02350 VAA_02351 PF02132 RecR protein VAA_02351 PF13662 Toprim domain VAA_02352 PF02575 YbaB/EbfC DNA-binding family VAA_02353 PF12168 VAA_02353 VAA_02353 PF12169 DNA polymerase III subunits gamma and tau domain III VAA_02353 PF12170 DNA polymerase III tau subunit V interacting with alpha VAA_02353 PF13177 DNA polymerase III, delta subunit VAA_02354 PF00156 Phosphoribosyl transferase domain VAA_02355 PF04304 VAA_02355 VAA_02357 PF00072 Response regulator receiver domain VAA_02358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02358 PF03466 LysR substrate binding domain VAA_02359 PF00881 Nitroreductase family VAA_02360 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VAA_02360 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VAA_02362 PF00108 Thiolase, N-terminal domain VAA_02362 PF02803 Thiolase, C-terminal domain VAA_02363 PF04542 Sigma-70 region 2 VAA_02363 PF08281 Sigma-70, region 4 VAA_02364 PF11859 VAA_02364 VAA_02365 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA_02366 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA_02367 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VAA_02367 PF12557 Cob(I)alamin adenosyltransferase N terminal VAA_02369 PF00485 Phosphoribulokinase / Uridine kinase family VAA_02370 PF10609 ParA/MinD ATPase like VAA_02371 PF01588 Putative tRNA binding domain VAA_02371 PF09334 tRNA synthetases class I (M) VAA_02373 PF01048 Phosphorylase superfamily VAA_02375 PF00122 E1-E2 ATPase VAA_02375 PF00403 Heavy-metal-associated domain VAA_02375 PF00702 haloacid dehalogenase-like hydrolase VAA_02376 PF00571 CBS domain VAA_02377 PF00990 GGDEF domain VAA_02377 PF08448 PAS fold VAA_02378 PF02391 MoaE protein VAA_02379 PF02597 ThiS family VAA_02380 PF01967 MoaC family VAA_02381 PF00994 Probable molybdopterin binding domain VAA_02382 PF04055 Radical SAM superfamily VAA_02382 PF06463 Molybdenum Cofactor Synthesis C VAA_02382 PF13353 4Fe-4S single cluster domain VAA_02383 PF01933 Uncharacterised protein family UPF0052 VAA_02384 PF01627 Hpt domain VAA_02385 PF00072 Response regulator receiver domain VAA_02385 PF00158 Sigma-54 interaction domain VAA_02385 PF02954 Bacterial regulatory protein, Fis family VAA_02386 PF00271 Helicase conserved C-terminal domain VAA_02386 PF02151 UvrB/uvrC motif VAA_02386 PF04851 Type III restriction enzyme, res subunit VAA_02386 PF12344 Ultra-violet resistance protein B VAA_02387 PF00759 Glycosyl hydrolase family 9 VAA_02387 PF02018 Carbohydrate binding domain VAA_02387 PF02927 N-terminal ig-like domain of cellulase VAA_02390 PF00793 DAHP synthetase I family VAA_02392 PF13561 Enoyl-(Acyl carrier protein) reductase VAA_02393 PF00425 chorismate binding enzyme VAA_02394 PF00501 AMP-binding enzyme VAA_02394 PF13193 AMP-binding enzyme C-terminal domain VAA_02395 PF00550 Phosphopantetheine attachment site VAA_02395 PF00857 Isochorismatase family VAA_02396 PF05977 Transmembrane secretion effector VAA_02398 PF00501 AMP-binding enzyme VAA_02398 PF00550 Phosphopantetheine attachment site VAA_02398 PF00668 Condensation domain VAA_02398 PF00975 Thioesterase domain VAA_02398 PF13193 AMP-binding enzyme C-terminal domain VAA_02407 PF00589 Phage integrase family VAA_02408 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA_02408 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_02410 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ VAA_02411 PF01432 Peptidase family M3 VAA_02412 PF00580 UvrD/REP helicase N-terminal domain VAA_02412 PF13361 UvrD-like helicase C-terminal domain VAA_02413 PF01810 VAA_02413 VAA_02414 PF02311 AraC-like ligand binding domain VAA_02414 PF12833 Helix-turn-helix domain VAA_02415 PF00892 EamA-like transporter family VAA_02416 PF00270 DEAD/DEAH box helicase VAA_02416 PF00271 Helicase conserved C-terminal domain VAA_02416 PF00570 HRDC domain VAA_02416 PF09382 RQC domain VAA_02416 PF16124 VAA_02416 VAA_02417 PF12305 VAA_02417 VAA_02419 PF01380 SIS domain VAA_02419 PF01418 Helix-turn-helix domain, rpiR family VAA_02420 PF13580 SIS domain VAA_02421 PF00367 phosphotransferase system, EIIB VAA_02421 PF02378 Phosphotransferase system, EIIC VAA_02422 PF00005 ABC transporter VAA_02422 PF00664 ABC transporter transmembrane region VAA_02423 PF00593 TonB dependent receptor VAA_02423 PF07715 TonB-dependent Receptor Plug Domain VAA_02424 PF00005 ABC transporter VAA_02425 PF01497 Periplasmic binding protein VAA_02426 PF01032 FecCD transport family VAA_02427 PF03350 VAA_02427 VAA_02430 PF00675 Insulinase (Peptidase family M16) VAA_02430 PF05193 Peptidase M16 inactive domain VAA_02431 PF00704 Glycosyl hydrolases family 18 VAA_02433 PF12728 Helix-turn-helix domain VAA_02434 PF06048 VAA_02434 VAA_02435 PF11459 VAA_02435 VAA_02435 PF17194 VAA_02435 VAA_02436 PF08843 Nucleotidyl transferase of unknown function (DUF1814) VAA_02437 PF01555 DNA methylase VAA_02438 PF00271 Helicase conserved C-terminal domain VAA_02438 PF04851 Type III restriction enzyme, res subunit VAA_02439 PF01381 Helix-turn-helix VAA_02439 PF06114 Domain of unknown function (DUF955) VAA_02445 PF12844 Helix-turn-helix domain VAA_02447 PF00589 Phage integrase family VAA_02447 PF13356 Domain of unknown function (DUF4102) VAA_02448 PF03755 VAA_02448 VAA_02448 PF08340 VAA_02448 VAA_02449 PF01138 3' exoribonuclease family, domain 1 VAA_02449 PF03725 3' exoribonuclease family, domain 2 VAA_02450 PF00156 Phosphoribosyl transferase domain VAA_02451 PF03279 VAA_02451 VAA_02453 PF00440 Bacterial regulatory proteins, tetR family VAA_02454 PF02441 Flavoprotein VAA_02454 PF04127 DNA / pantothenate metabolism flavoprotein VAA_02455 PF04002 RadC-like JAB domain VAA_02456 PF00830 Ribosomal L28 family VAA_02457 PF00471 Ribosomal protein L33 VAA_02459 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VAA_02459 PF06827 Zinc finger found in FPG and IleRS VAA_02459 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VAA_02460 PF01467 Cytidylyltransferase VAA_02462 PF00535 Glycosyl transferase family 2 VAA_02463 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VAA_02464 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family VAA_02465 PF00535 Glycosyl transferase family 2 VAA_02465 PF02709 N-terminal domain of galactosyltransferase VAA_02467 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VAA_02468 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_02469 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VAA_02470 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VAA_02471 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VAA_02472 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VAA_02473 PF04932 VAA_02473 VAA_02474 PF01522 Polysaccharide deacetylase VAA_02474 PF13439 Glycosyltransferase Family 4 VAA_02475 PF01370 NAD dependent epimerase/dehydratase family VAA_02476 PF16363 VAA_02476 VAA_02477 PF00483 Nucleotidyl transferase VAA_02478 PF04321 RmlD substrate binding domain VAA_02479 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VAA_02480 PF01061 VAA_02480 VAA_02481 PF00005 ABC transporter VAA_02481 PF14524 Wzt C-terminal domain VAA_02482 PF13489 Methyltransferase domain VAA_02483 PF01609 Transposase DDE domain VAA_02483 PF13808 VAA_02483 VAA_02487 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_02487 PF00175 Oxidoreductase NAD-binding domain VAA_02487 PF00970 Oxidoreductase FAD-binding domain VAA_02488 PF00483 Nucleotidyl transferase VAA_02489 PF16363 VAA_02489 VAA_02490 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VAA_02491 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_02491 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_02491 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_02492 PF13420 Acetyltransferase (GNAT) domain VAA_02494 PF04138 VAA_02494 VAA_02496 PF00535 Glycosyl transferase family 2 VAA_02497 PF04577 VAA_02497 VAA_02498 PF05523 WxcM-like, C-terminal VAA_02499 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_02500 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VAA_02501 PF00535 Glycosyl transferase family 2 VAA_02502 PF00535 Glycosyl transferase family 2 VAA_02503 PF02709 N-terminal domain of galactosyltransferase VAA_02504 PF02719 Polysaccharide biosynthesis protein VAA_02505 PF01370 NAD dependent epimerase/dehydratase family VAA_02506 PF02397 VAA_02506 VAA_02507 PF13365 Trypsin-like peptidase domain VAA_02508 PF06082 VAA_02508 VAA_02509 PF06251 Capsule biosynthesis GfcC VAA_02510 PF11102 Group 4 capsule polysaccharide formation lipoprotein gfcB VAA_02512 PF02563 Polysaccharide biosynthesis/export protein VAA_02512 PF10531 SLBB domain VAA_02513 PF01451 Low molecular weight phosphotyrosine protein phosphatase VAA_02514 PF02706 Chain length determinant protein VAA_02514 PF13614 AAA domain VAA_02514 PF13807 VAA_02514 VAA_02515 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_02516 PF14296 VAA_02516 VAA_02518 PF00534 Glycosyl transferases group 1 VAA_02518 PF13439 Glycosyltransferase Family 4 VAA_02520 PF00534 Glycosyl transferases group 1 VAA_02520 PF13477 Glycosyl transferase 4-like VAA_02521 PF01370 NAD dependent epimerase/dehydratase family VAA_02522 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VAA_02522 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VAA_02522 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VAA_02523 PF00953 Glycosyl transferase family 4 VAA_02524 PF00753 Metallo-beta-lactamase superfamily VAA_02524 PF07521 RNA-metabolising metallo-beta-lactamase VAA_02524 PF10996 Beta-Casp domain VAA_02525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02525 PF00672 HAMP domain VAA_02525 PF02743 Cache domain VAA_02526 PF00924 Mechanosensitive ion channel VAA_02527 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_02528 PF04222 Protein of unknown function (DUF416) VAA_02529 PF04480 Protein of unknown function (DUF559) VAA_02530 PF00571 CBS domain VAA_02530 PF01595 VAA_02530 VAA_02532 PF00216 Bacterial DNA-binding protein VAA_02533 PF07356 VAA_02533 VAA_02534 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VAA_02534 PF02843 Phosphoribosylglycinamide synthetase, C domain VAA_02534 PF02844 Phosphoribosylglycinamide synthetase, N domain VAA_02535 PF01808 AICARFT/IMPCHase bienzyme VAA_02535 PF02142 MGS-like domain VAA_02537 PF00376 MerR family regulatory protein VAA_02537 PF09278 MerR, DNA binding VAA_02538 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02540 PF02954 Bacterial regulatory protein, Fis family VAA_02541 PF01207 Dihydrouridine synthase (Dus) VAA_02543 PF06325 Ribosomal protein L11 methyltransferase (PrmA) VAA_02544 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain VAA_02544 PF02785 Biotin carboxylase C-terminal domain VAA_02544 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VAA_02545 PF00364 Biotin-requiring enzyme VAA_02546 PF01220 Dehydroquinase class II VAA_02547 PF00501 AMP-binding enzyme VAA_02547 PF13193 AMP-binding enzyme C-terminal domain VAA_02547 PF16177 VAA_02547 VAA_02548 PF00929 Exonuclease VAA_02549 PF00027 Cyclic nucleotide-binding domain VAA_02549 PF03445 VAA_02549 VAA_02549 PF10335 VAA_02549 VAA_02550 PF12832 MFS_1 like family VAA_02551 PF00072 Response regulator receiver domain VAA_02551 PF00512 His Kinase A (phospho-acceptor) domain VAA_02551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02551 PF12860 VAA_02551 VAA_02552 PF00474 Sodium:solute symporter family VAA_02553 PF13937 VAA_02553 VAA_02554 PF00999 Sodium/hydrogen exchanger family VAA_02554 PF02080 TrkA-C domain VAA_02554 PF03471 Transporter associated domain VAA_02555 PF00072 Response regulator receiver domain VAA_02555 PF00196 Bacterial regulatory proteins, luxR family VAA_02556 PF02683 VAA_02556 VAA_02556 PF11412 Disulphide bond corrector protein DsbC VAA_02556 PF13899 Thioredoxin-like VAA_02557 PF01316 Arginine repressor, DNA binding domain VAA_02557 PF02863 Arginine repressor, C-terminal domain VAA_02559 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VAA_02559 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VAA_02560 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA_02560 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA_02561 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA_02561 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA_02562 PF00696 Amino acid kinase family VAA_02563 PF02274 Amidinotransferase VAA_02565 PF03606 VAA_02565 VAA_02566 PF03605 VAA_02566 VAA_02568 PF00206 Lyase VAA_02568 PF10415 Fumarase C C-terminus VAA_02569 PF04186 VAA_02569 VAA_02570 PF00313 'Cold-shock' DNA-binding domain VAA_02571 PF00588 SpoU rRNA Methylase family VAA_02572 PF00512 His Kinase A (phospho-acceptor) domain VAA_02572 PF00672 HAMP domain VAA_02572 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02572 PF16527 VAA_02572 VAA_02573 PF00072 Response regulator receiver domain VAA_02573 PF00486 Transcriptional regulatory protein, C terminal VAA_02574 PF07813 LTXXQ motif family protein VAA_02575 PF01545 Cation efflux family VAA_02575 PF16916 VAA_02575 VAA_02577 PF00365 Phosphofructokinase VAA_02578 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VAA_02579 PF06005 Protein of unknown function (DUF904) VAA_02580 PF02219 Methylenetetrahydrofolate reductase VAA_02581 PF00696 Amino acid kinase family VAA_02581 PF00742 Homoserine dehydrogenase VAA_02581 PF03447 Homoserine dehydrogenase, NAD binding domain VAA_02582 PF01053 Cys/Met metabolism PLP-dependent enzyme VAA_02583 PF01340 Met Apo-repressor, MetJ VAA_02584 PF00390 Malic enzyme, N-terminal domain VAA_02584 PF03949 Malic enzyme, NAD binding domain VAA_02585 PF01197 Ribosomal protein L31 VAA_02586 PF00270 DEAD/DEAH box helicase VAA_02586 PF00271 Helicase conserved C-terminal domain VAA_02587 PF00356 Bacterial regulatory proteins, lacI family VAA_02587 PF13377 Periplasmic binding protein-like domain VAA_02588 PF05036 Sporulation related domain VAA_02589 PF00227 Proteasome subunit VAA_02590 PF00004 ATPase family associated with various cellular activities (AAA) VAA_02590 PF07724 AAA domain (Cdc48 subfamily) VAA_02590 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_02591 PF01040 UbiA prenyltransferase family VAA_02592 PF03737 Demethylmenaquinone methyltransferase VAA_02593 PF01554 MatE VAA_02595 PF00121 Triosephosphate isomerase VAA_02596 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase VAA_02597 PF05656 VAA_02597 VAA_02598 PF11333 VAA_02598 VAA_02599 PF13412 Winged helix-turn-helix DNA-binding VAA_02600 PF00166 Chaperonin 10 Kd subunit VAA_02601 PF00118 TCP-1/cpn60 chaperonin family VAA_02603 PF02308 VAA_02603 VAA_02604 PF04055 Radical SAM superfamily VAA_02604 PF13353 4Fe-4S single cluster domain VAA_02605 PF01132 Elongation factor P (EF-P) OB domain VAA_02605 PF08207 Elongation factor P (EF-P) KOW-like domain VAA_02605 PF09285 Elongation factor P, C-terminal VAA_02606 PF02313 Fumarate reductase subunit D VAA_02607 PF02300 Fumarate reductase subunit C VAA_02608 PF13085 2Fe-2S iron-sulfur cluster binding domain VAA_02608 PF13183 4Fe-4S dicluster domain VAA_02609 PF00890 FAD binding domain VAA_02609 PF02910 Fumarate reductase flavoprotein C-term VAA_02610 PF00152 tRNA synthetases class II (D, K and N) VAA_02611 PF00581 Rhodanese-like domain VAA_02612 PF02556 Preprotein translocase subunit SecB VAA_02613 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VAA_02613 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VAA_02614 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_02614 PF06426 Serine acetyltransferase, N-terminal VAA_02615 PF03551 Transcriptional regulator PadR-like family VAA_02615 PF10400 Virulence activator alpha C-term VAA_02616 PF00311 Phosphoenolpyruvate carboxylase VAA_02617 PF01546 Peptidase family M20/M25/M40 VAA_02617 PF07687 Peptidase dimerisation domain VAA_02618 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA_02618 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA_02619 PF00696 Amino acid kinase family VAA_02620 PF00764 Arginosuccinate synthase VAA_02622 PF00206 Lyase VAA_02622 PF00583 Acetyltransferase (GNAT) family VAA_02622 PF14698 Argininosuccinate lyase C-terminal VAA_02623 PF12292 VAA_02623 VAA_02624 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA_02624 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_02625 PF00462 Glutaredoxin VAA_02625 PF08534 Redoxin VAA_02626 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02626 PF03466 LysR substrate binding domain VAA_02627 PF00905 Penicillin binding protein transpeptidase domain VAA_02627 PF00912 Transglycosylase VAA_02627 PF17092 VAA_02627 VAA_02628 PF11104 Type IV pilus assembly protein PilM; VAA_02629 PF05137 VAA_02629 VAA_02630 PF04350 Pilus assembly protein, PilO VAA_02631 PF04351 Pilus assembly protein, PilP VAA_02632 PF00263 VAA_02632 VAA_02632 PF03958 Bacterial type II/III secretion system short domain VAA_02633 PF01202 Shikimate kinase VAA_02634 PF01761 3-dehydroquinate synthase VAA_02635 PF05036 Sporulation related domain VAA_02635 PF13401 AAA domain VAA_02636 PF02086 D12 class N6 adenine-specific DNA methyltransferase VAA_02637 PF00834 Ribulose-phosphate 3 epimerase family VAA_02638 PF13419 Haloacid dehalogenase-like hydrolase VAA_02639 PF00579 tRNA synthetases class I (W and Y) VAA_02640 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_02641 PF00932 Lamin Tail Domain VAA_02642 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02642 PF03466 LysR substrate binding domain VAA_02643 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VAA_02644 PF01494 FAD binding domain VAA_02645 PF05141 Pyoverdine/dityrosine biosynthesis protein VAA_02646 PF00117 Glutamine amidotransferase class-I VAA_02647 PF00202 Aminotransferase class-III VAA_02648 PF04958 Arginine N-succinyltransferase beta subunit VAA_02649 PF00171 Aldehyde dehydrogenase family VAA_02650 PF07063 Domain of unknown function (DUF1338) VAA_02651 PF00027 Cyclic nucleotide-binding domain VAA_02651 PF00325 Bacterial regulatory proteins, crp family VAA_02652 PF00485 Phosphoribulokinase / Uridine kinase family VAA_02653 PF06794 Uncharacterised protein family (UPF0270) VAA_02654 PF00561 alpha/beta hydrolase fold VAA_02655 PF09523 VAA_02655 VAA_02656 PF00005 ABC transporter VAA_02656 PF12848 ABC transporter VAA_02657 PF02525 Flavodoxin-like fold VAA_02658 PF00999 Sodium/hydrogen exchanger family VAA_02658 PF02254 TrkA-N domain VAA_02659 PF09526 VAA_02659 VAA_02660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_02662 PF01112 Asparaginase VAA_02663 PF00709 Adenylosuccinate synthetase VAA_02665 PF08238 Sel1 repeat VAA_02666 PF00575 S1 RNA binding domain VAA_02666 PF00773 RNB domain VAA_02666 PF08206 Ribonuclease B OB domain VAA_02666 PF08461 Ribonuclease R winged-helix domain VAA_02667 PF00588 SpoU rRNA Methylase family VAA_02669 PF00338 Ribosomal protein S10p/S20e VAA_02670 PF00297 Ribosomal protein L3 VAA_02671 PF00573 Ribosomal protein L4/L1 family VAA_02672 PF00276 Ribosomal protein L23 VAA_02673 PF00181 Ribosomal Proteins L2, RNA binding domain VAA_02673 PF03947 Ribosomal Proteins L2, C-terminal domain VAA_02674 PF00203 Ribosomal protein S19 VAA_02675 PF00237 Ribosomal protein L22p/L17e VAA_02676 PF00189 Ribosomal protein S3, C-terminal domain VAA_02676 PF07650 KH domain VAA_02677 PF00252 Ribosomal protein L16p/L10e VAA_02678 PF00831 Ribosomal L29 protein VAA_02679 PF00366 Ribosomal protein S17 VAA_02680 PF00238 Ribosomal protein L14p/L23e VAA_02681 PF00467 KOW motif VAA_02681 PF17136 VAA_02681 VAA_02682 PF00281 Ribosomal protein L5 VAA_02682 PF00673 ribosomal L5P family C-terminus VAA_02683 PF00253 Ribosomal protein S14p/S29e VAA_02684 PF00410 Ribosomal protein S8 VAA_02685 PF00347 Ribosomal protein L6 VAA_02686 PF00861 Ribosomal L18p/L5e family VAA_02687 PF00333 Ribosomal protein S5, N-terminal domain VAA_02687 PF03719 Ribosomal protein S5, C-terminal domain VAA_02688 PF00327 Ribosomal protein L30p/L7e VAA_02689 PF00828 Ribosomal protein L18e/L15 VAA_02690 PF00344 SecY translocase VAA_02691 PF00444 Ribosomal protein L36 VAA_02692 PF00416 Ribosomal protein S13/S18 VAA_02693 PF00411 Ribosomal protein S11 VAA_02694 PF00163 Ribosomal protein S4/S9 N-terminal domain VAA_02694 PF01479 S4 domain VAA_02695 PF01000 RNA polymerase Rpb3/RpoA insert domain VAA_02695 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VAA_02695 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VAA_02696 PF01196 Ribosomal protein L17 VAA_02697 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA_02697 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA_02698 PF04225 Opacity-associated protein A LysM-like domain VAA_02698 PF08525 VAA_02698 VAA_02699 PF13673 Acetyltransferase (GNAT) domain VAA_02700 PF00270 DEAD/DEAH box helicase VAA_02700 PF00271 Helicase conserved C-terminal domain VAA_02700 PF03880 DbpA RNA binding domain VAA_02701 PF01553 Acyltransferase VAA_02701 PF13444 Acetyltransferase (GNAT) domain VAA_02703 PF04945 YHS domain VAA_02704 PF05742 VAA_02704 VAA_02708 PF09335 VAA_02708 VAA_02709 PF00149 Calcineurin-like phosphoesterase VAA_02709 PF02872 5'-nucleotidase, C-terminal domain VAA_02710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA_02711 PF01507 Phosphoadenosine phosphosulfate reductase family VAA_02712 PF00009 Elongation factor Tu GTP binding domain VAA_02713 PF01583 Adenylylsulphate kinase VAA_02714 PF10987 VAA_02714 VAA_02715 PF11736 Protein of unknown function (DUF3299) VAA_02716 PF02687 VAA_02716 VAA_02716 PF12704 MacB-like periplasmic core domain VAA_02717 PF00005 ABC transporter VAA_02718 PF10986 VAA_02718 VAA_02719 PF10795 VAA_02719 VAA_02720 PF09695 VAA_02720 VAA_02721 PF01625 Peptide methionine sulfoxide reductase VAA_02722 PF01103 Surface antigen VAA_02722 PF17243 VAA_02722 VAA_02723 PF04357 VAA_02723 VAA_02724 PF06094 AIG2-like family VAA_02725 PF00719 Inorganic pyrophosphatase VAA_02726 PF00316 Fructose-1-6-bisphosphatase VAA_02727 PF01225 Mur ligase family, catalytic domain VAA_02727 PF02875 Mur ligase family, glutamate ligase domain VAA_02727 PF08245 Mur ligase middle domain VAA_02728 PF02441 Flavoprotein VAA_02729 PF13343 Bacterial extracellular solute-binding protein VAA_02730 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02731 PF00005 ABC transporter VAA_02732 PF04751 Protein of unknown function (DUF615) VAA_02733 PF01523 Putative modulator of DNA gyrase VAA_02734 PF00571 CBS domain VAA_02734 PF01769 Divalent cation transporter VAA_02734 PF03448 MgtE intracellular N domain VAA_02735 PF00381 PTS HPr component phosphorylation site VAA_02736 PF03668 VAA_02736 VAA_02737 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02738 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VAA_02739 PF00309 VAA_02739 VAA_02739 PF04552 Sigma-54, DNA binding domain VAA_02739 PF04963 Sigma-54 factor, core binding domain VAA_02740 PF00005 ABC transporter VAA_02740 PF12399 Branched-chain amino acid ATP-binding cassette transporter VAA_02741 PF03968 OstA-like protein VAA_02742 PF06835 Lipopolysaccharide-assembly, LptC-related VAA_02743 PF08282 haloacid dehalogenase-like hydrolase VAA_02744 PF00571 CBS domain VAA_02744 PF01380 SIS domain VAA_02745 PF01699 Sodium/calcium exchanger protein VAA_02746 PF01699 Sodium/calcium exchanger protein VAA_02748 PF00005 ABC transporter VAA_02749 PF02405 VAA_02749 VAA_02750 PF02470 VAA_02750 VAA_02751 PF05494 Toluene tolerance, Ttg2 VAA_02752 PF13466 STAS domain VAA_02753 PF01722 BolA-like protein VAA_02754 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VAA_02755 PF01553 Acyltransferase VAA_02756 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02757 PF07700 Heme NO binding VAA_02758 PF01042 Endoribonuclease L-PSP VAA_02759 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VAA_02759 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VAA_02760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA_02760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA_02763 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA_02763 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA_02764 PF02562 PhoH-like protein VAA_02764 PF13638 PIN domain VAA_02765 PF00176 SNF2 family N-terminal domain VAA_02765 PF00271 Helicase conserved C-terminal domain VAA_02765 PF12137 RNA polymerase recycling family C-terminal VAA_02768 PF00849 RNA pseudouridylate synthase VAA_02769 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA_02769 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_02770 PF00133 tRNA synthetases class I (I, L, M and V) VAA_02770 PF08264 Anticodon-binding domain of tRNA VAA_02770 PF10458 Valyl tRNA synthetase tRNA binding arm VAA_02771 PF04364 DNA polymerase III chi subunit, HolC VAA_02772 PF00883 Cytosol aminopeptidase family, catalytic domain VAA_02772 PF02789 Cytosol aminopeptidase family, N-terminal domain VAA_02773 PF03739 VAA_02773 VAA_02774 PF03739 VAA_02774 VAA_02775 PF06271 VAA_02775 VAA_02780 PF00589 Phage integrase family VAA_02781 PF01966 HD domain VAA_02781 PF11871 VAA_02781 VAA_02783 PF02805 Metal binding domain of Ada VAA_02783 PF06029 AlkA N-terminal domain VAA_02783 PF12833 Helix-turn-helix domain VAA_02784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02784 PF03466 LysR substrate binding domain VAA_02785 PF04219 VAA_02785 VAA_02786 PF11280 VAA_02786 VAA_02787 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VAA_02788 PF01551 Peptidase family M23 VAA_02789 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02789 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_02789 PF02378 Phosphotransferase system, EIIC VAA_02790 PF01232 Mannitol dehydrogenase Rossmann domain VAA_02790 PF08125 Mannitol dehydrogenase C-terminal domain VAA_02791 PF05068 Mannitol repressor VAA_02792 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA_02793 PF03600 Citrate transporter VAA_02794 PF00375 Sodium:dicarboxylate symporter family VAA_02795 PF07681 VAA_02795 VAA_02797 PF01483 Proprotein convertase P-domain VAA_02797 PF13582 Metallo-peptidase family M12B Reprolysin-like VAA_02798 PF11168 VAA_02798 VAA_02799 PF13533 Biotin-lipoyl like VAA_02800 PF01047 MarR family VAA_02801 PF04393 VAA_02801 VAA_02802 PF00563 EAL domain VAA_02803 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VAA_02804 PF00581 Rhodanese-like domain VAA_02805 PF12698 ABC-2 family transporter protein VAA_02806 PF00005 ABC transporter VAA_02807 PF13437 HlyD family secretion protein VAA_02808 PF12710 haloacid dehalogenase-like hydrolase VAA_02809 PF00005 ABC transporter VAA_02809 PF08402 TOBE domain VAA_02810 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02811 PF00528 Binding-protein-dependent transport system inner membrane component VAA_02812 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VAA_02813 PF13343 Bacterial extracellular solute-binding protein VAA_02814 PF00392 Bacterial regulatory proteins, gntR family VAA_02814 PF07702 UTRA domain VAA_02816 PF01042 Endoribonuclease L-PSP VAA_02818 PF00916 VAA_02818 VAA_02818 PF01740 STAS domain VAA_02819 PF04055 Radical SAM superfamily VAA_02819 PF13353 4Fe-4S single cluster domain VAA_02820 PF11230 VAA_02820 VAA_02821 PF02798 Glutathione S-transferase, N-terminal domain VAA_02821 PF14497 Glutathione S-transferase, C-terminal domain VAA_02822 PF00107 Zinc-binding dehydrogenase VAA_02822 PF16884 VAA_02822 VAA_02823 PF00440 Bacterial regulatory proteins, tetR family VAA_02823 PF16925 VAA_02823 VAA_02824 PF11308 VAA_02824 VAA_02825 PF11060 VAA_02825 VAA_02826 PF00072 Response regulator receiver domain VAA_02826 PF00486 Transcriptional regulatory protein, C terminal VAA_02827 PF11884 Domain of unknown function (DUF3404) VAA_02827 PF14501 GHKL domain VAA_02828 PF00849 RNA pseudouridylate synthase VAA_02832 PF13737 VAA_02832 VAA_02833 PF05591 VAA_02833 VAA_02834 PF05943 VAA_02834 VAA_02835 PF04965 Gene 25-like lysozyme VAA_02837 PF05947 VAA_02837 VAA_02839 PF00498 FHA domain VAA_02840 PF12790 Type VI secretion lipoprotein VAA_02841 PF05936 VAA_02841 VAA_02842 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) VAA_02843 PF00004 ATPase family associated with various cellular activities (AAA) VAA_02843 PF02861 Clp amino terminal domain VAA_02843 PF07724 AAA domain (Cdc48 subfamily) VAA_02843 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_02844 PF00158 Sigma-54 interaction domain VAA_02844 PF02954 Bacterial regulatory protein, Fis family VAA_02845 PF11319 VAA_02845 VAA_02846 PF06812 VAA_02846 VAA_02846 PF16989 VAA_02846 VAA_02847 PF06744 VAA_02847 VAA_02847 PF06761 VAA_02847 VAA_02847 PF14331 VAA_02847 VAA_02848 PF06812 VAA_02848 VAA_02849 PF05954 Phage late control gene D protein (GPD) VAA_02850 PF13503 VAA_02850 VAA_02851 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) VAA_02853 PF11153 VAA_02853 VAA_02854 PF01124 MAPEG family VAA_02855 PF01852 START domain VAA_02856 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_02857 PF03547 VAA_02857 VAA_02858 PF00440 Bacterial regulatory proteins, tetR family VAA_02859 PF12146 Putative lysophospholipase VAA_02860 PF00939 Sodium:sulfate symporter transmembrane region VAA_02861 PF09829 VAA_02861 VAA_02862 PF00704 Glycosyl hydrolases family 18 VAA_02862 PF08329 Chitinase A, N-terminal domain VAA_02863 PF00392 Bacterial regulatory proteins, gntR family VAA_02864 PF00005 ABC transporter VAA_02866 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02866 PF00672 HAMP domain VAA_02866 PF02743 Cache domain VAA_02867 PF01614 Bacterial transcriptional regulator VAA_02867 PF08279 HTH domain VAA_02868 PF00491 Arginase family VAA_02869 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02869 PF00672 HAMP domain VAA_02871 PF05787 Bacterial protein of unknown function (DUF839) VAA_02872 PF01569 PAP2 superfamily VAA_02874 PF00005 ABC transporter VAA_02874 PF00664 ABC transporter transmembrane region VAA_02876 PF02274 Amidinotransferase VAA_02877 PF00990 GGDEF domain VAA_02878 PF00990 GGDEF domain VAA_02878 PF08447 PAS fold VAA_02881 PF01261 Xylose isomerase-like TIM barrel VAA_02882 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA_02883 PF08282 haloacid dehalogenase-like hydrolase VAA_02884 PF00596 Class II Aldolase and Adducin N-terminal domain VAA_02885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA_02886 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA_02886 PF03611 VAA_02886 VAA_02888 PF00455 VAA_02888 VAA_02888 PF08220 DeoR-like helix-turn-helix domain VAA_02889 PF13483 Beta-lactamase superfamily domain VAA_02890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA_02891 PF02264 LamB porin VAA_02892 PF07148 VAA_02892 VAA_02893 PF06202 Amylo-alpha-1,6-glucosidase VAA_02894 PF13416 Bacterial extracellular solute-binding protein VAA_02895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02895 PF03466 LysR substrate binding domain VAA_02896 PF00128 Alpha amylase, catalytic domain VAA_02896 PF16657 VAA_02896 VAA_02897 PF08238 Sel1 repeat VAA_02898 PF00375 Sodium:dicarboxylate symporter family VAA_02899 PF04314 Protein of unknown function (DUF461) VAA_02900 PF02630 SCO1/SenC VAA_02902 PF04018 VAA_02902 VAA_02903 PF03616 VAA_02903 VAA_02904 PF07238 PilZ domain VAA_02904 PF12945 Flagellar protein YcgR VAA_02905 PF14542 GCN5-related N-acetyl-transferase VAA_02906 PF03372 Endonuclease/Exonuclease/phosphatase family VAA_02907 PF07690 Major Facilitator Superfamily VAA_02908 PF13533 Biotin-lipoyl like VAA_02909 PF11742 VAA_02909 VAA_02910 PF00990 GGDEF domain VAA_02913 PF01048 Phosphorylase superfamily VAA_02914 PF04463 VAA_02914 VAA_02914 PF08349 VAA_02914 VAA_02915 PF13411 MerR HTH family regulatory protein VAA_02916 PF00875 DNA photolyase VAA_02916 PF03441 FAD binding domain of DNA photolyase VAA_02917 PF01476 LysM domain VAA_02917 PF03734 L,D-transpeptidase catalytic domain VAA_02918 PF04728 Lipoprotein leucine-zipper VAA_02919 PF00270 DEAD/DEAH box helicase VAA_02919 PF00271 Helicase conserved C-terminal domain VAA_02920 PF00326 Prolyl oligopeptidase family VAA_02922 PF00593 TonB dependent receptor VAA_02922 PF07715 TonB-dependent Receptor Plug Domain VAA_02923 PF01483 Proprotein convertase P-domain VAA_02923 PF02128 Fungalysin metallopeptidase (M36) VAA_02924 PF07603 VAA_02924 VAA_02927 PF01676 Metalloenzyme superfamily VAA_02928 PF01168 Alanine racemase, N-terminal domain VAA_02929 PF10797 VAA_02929 VAA_02930 PF10941 VAA_02930 VAA_02931 PF02126 Phosphotriesterase family VAA_02933 PF14502 Helix-turn-helix domain VAA_02933 PF14503 YhfZ C-terminal domain VAA_02934 PF12262 VAA_02934 VAA_02936 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA_02937 PF00128 Alpha amylase, catalytic domain VAA_02939 PF00248 Aldo/keto reductase family VAA_02942 PF00005 ABC transporter VAA_02943 PF02687 VAA_02943 VAA_02943 PF12704 MacB-like periplasmic core domain VAA_02944 PF17131 VAA_02944 VAA_02946 PF06580 VAA_02946 VAA_02947 PF00072 Response regulator receiver domain VAA_02947 PF04397 LytTr DNA-binding domain VAA_02948 PF00563 EAL domain VAA_02948 PF12792 VAA_02948 VAA_02949 PF08548 Peptidase M10 serralysin C terminal VAA_02950 PF03605 VAA_02950 VAA_02951 PF13673 Acetyltransferase (GNAT) domain VAA_02952 PF00072 Response regulator receiver domain VAA_02952 PF13487 HD domain VAA_02953 PF00072 Response regulator receiver domain VAA_02953 PF00512 His Kinase A (phospho-acceptor) domain VAA_02953 PF01627 Hpt domain VAA_02953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02953 PF08448 PAS fold VAA_02954 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02955 PF13520 Amino acid permease VAA_02956 PF01810 VAA_02956 VAA_02959 PF03063 Prismane/CO dehydrogenase family VAA_02960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_02960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA_02961 PF00072 Response regulator receiver domain VAA_02961 PF00512 His Kinase A (phospho-acceptor) domain VAA_02961 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02963 PF02321 Outer membrane efflux protein VAA_02964 PF11604 Copper binding periplasmic protein CusF VAA_02964 PF16576 VAA_02964 VAA_02965 PF00873 AcrB/AcrD/AcrF family VAA_02967 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_02968 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA_02969 PF02566 OsmC-like protein VAA_02970 PF12464 Maltose acetyltransferase VAA_02970 PF14602 Hexapeptide repeat of succinyl-transferase VAA_02971 PF00892 EamA-like transporter family VAA_02972 PF01545 Cation efflux family VAA_02973 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02973 PF03466 LysR substrate binding domain VAA_02974 PF13489 Methyltransferase domain VAA_02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_02975 PF03466 LysR substrate binding domain VAA_02976 PF00501 AMP-binding enzyme VAA_02976 PF13193 AMP-binding enzyme C-terminal domain VAA_02977 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VAA_02978 PF01329 Pterin 4 alpha carbinolamine dehydratase VAA_02980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_02980 PF00672 HAMP domain VAA_02981 PF01554 MatE VAA_02982 PF02311 AraC-like ligand binding domain VAA_02982 PF12833 Helix-turn-helix domain VAA_02984 PF00072 Response regulator receiver domain VAA_02984 PF11849 VAA_02984 VAA_02984 PF13487 HD domain VAA_02985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_02985 PF17149 VAA_02985 VAA_02987 PF07690 Major Facilitator Superfamily VAA_02988 PF00012 Hsp70 protein VAA_02989 PF00892 EamA-like transporter family VAA_02990 PF01037 AsnC family VAA_02990 PF13412 Winged helix-turn-helix DNA-binding VAA_02991 PF00657 GDSL-like Lipase/Acylhydrolase VAA_02992 PF07968 Leukocidin/Hemolysin toxin family VAA_02992 PF12563 Hemolytic toxin N terminal VAA_02992 PF16458 VAA_02992 VAA_02993 PF00561 alpha/beta hydrolase fold VAA_02994 PF03280 Proteobacterial lipase chaperone protein VAA_02995 PF00801 PKD domain VAA_02995 PF05547 VAA_02995 VAA_02997 PF13230 Glutamine amidotransferases class-II VAA_02998 PF01752 Collagenase VAA_02998 PF08453 Peptidase family M9 N-terminal VAA_02999 PF11301 VAA_02999 VAA_03000 PF01497 Periplasmic binding protein VAA_03001 PF01032 FecCD transport family VAA_03002 PF01032 FecCD transport family VAA_03003 PF00005 ABC transporter VAA_03004 PF00871 Acetokinase family VAA_03005 PF00579 tRNA synthetases class I (W and Y) VAA_03005 PF01479 S4 domain VAA_03006 PF00196 Bacterial regulatory proteins, luxR family VAA_03008 PF00211 Adenylate and Guanylate cyclase catalytic domain VAA_03011 PF03050 VAA_03011 VAA_03011 PF13005 VAA_03011 VAA_03011 PF13007 VAA_03011 VAA_03011 PF13817 VAA_03011 VAA_03012 PF13333 VAA_03012 VAA_03013 PF01965 DJ-1/PfpI family VAA_03013 PF12833 Helix-turn-helix domain VAA_03015 PF00486 Transcriptional regulatory protein, C terminal VAA_03017 PF00486 Transcriptional regulatory protein, C terminal VAA_03018 PF00665 Integrase core domain VAA_03018 PF13276 VAA_03018 VAA_03019 PF01527 Transposase VAA_03021 PF00069 Protein kinase domain VAA_03022 PF06744 VAA_03022 VAA_03022 PF06761 VAA_03022 VAA_03022 PF14331 VAA_03022 VAA_03023 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) VAA_03024 PF05936 VAA_03024 VAA_03025 PF12790 Type VI secretion lipoprotein VAA_03026 PF00498 FHA domain VAA_03027 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_03028 PF04392 ABC transporter substrate binding protein VAA_03029 PF07690 Major Facilitator Superfamily VAA_03030 PF07478 D-ala D-ala ligase C-terminus VAA_03031 PF00004 ATPase family associated with various cellular activities (AAA) VAA_03031 PF07724 AAA domain (Cdc48 subfamily) VAA_03031 PF10431 C-terminal, D2-small domain, of ClpB protein VAA_03032 PF06996 VAA_03032 VAA_03034 PF05947 VAA_03034 VAA_03035 PF04965 Gene 25-like lysozyme VAA_03036 PF05943 VAA_03036 VAA_03037 PF05943 VAA_03037 VAA_03038 PF05591 VAA_03038 VAA_03039 PF05638 Protein of unknown function (DUF796) VAA_03040 PF06812 VAA_03040 VAA_03042 PF05954 Phage late control gene D protein (GPD) VAA_03044 PF05488 PAAR motif VAA_03048 PF00589 Phage integrase family VAA_03048 PF12167 VAA_03048 VAA_03048 PF14659 Phage integrase, N-terminal SAM-like domain VAA_03050 PF13443 Cro/C1-type HTH DNA-binding domain VAA_03051 PF00990 GGDEF domain VAA_03052 PF10881 VAA_03052 VAA_03053 PF00128 Alpha amylase, catalytic domain VAA_03053 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA_03053 PF03714 Bacterial pullanase-associated domain VAA_03053 PF11852 Domain of unknown function (DUF3372) VAA_03054 PF00072 Response regulator receiver domain VAA_03054 PF01584 CheW-like domain VAA_03055 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_03056 PF00072 Response regulator receiver domain VAA_03056 PF12431 VAA_03056 VAA_03057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03057 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VAA_03057 PF17203 VAA_03057 VAA_03060 PF02321 Outer membrane efflux protein VAA_03062 PF13533 Biotin-lipoyl like VAA_03063 PF12698 ABC-2 family transporter protein VAA_03065 PF13671 AAA domain VAA_03066 PF04204 Homoserine O-succinyltransferase VAA_03067 PF13174 Tetratricopeptide repeat VAA_03067 PF13424 Tetratricopeptide repeat VAA_03070 PF05971 Protein of unknown function (DUF890) VAA_03071 PF01863 Protein of unknown function DUF45 VAA_03073 PF00462 Glutaredoxin VAA_03074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03074 PF03466 LysR substrate binding domain VAA_03075 PF07690 Major Facilitator Superfamily VAA_03076 PF07209 VAA_03076 VAA_03077 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VAA_03078 PF00005 ABC transporter VAA_03079 PF01032 FecCD transport family VAA_03080 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VAA_03081 PF00300 Histidine phosphatase superfamily (branch 1) VAA_03082 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VAA_03083 PF02654 VAA_03083 VAA_03084 PF02277 Phosphoribosyltransferase VAA_03085 PF03496 ADP-ribosyltransferase exoenzyme VAA_03085 PF03497 Anthrax toxin LF subunit VAA_03085 PF07634 VAA_03085 VAA_03085 PF11647 C-terminal region of Pasteurella multocida toxin residues 569-1285 VAA_03085 PF11713 Peptidase C80 family VAA_03087 PF02794 VAA_03087 VAA_03089 PF00005 ABC transporter VAA_03089 PF00664 ABC transporter transmembrane region VAA_03090 PF13437 HlyD family secretion protein VAA_03091 PF00005 ABC transporter VAA_03091 PF00664 ABC transporter transmembrane region VAA_03091 PF03412 Peptidase C39 family VAA_03092 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03092 PF02743 Cache domain VAA_03094 PF08732 VAA_03094 VAA_03095 PF00375 Sodium:dicarboxylate symporter family VAA_03096 PF00929 Exonuclease VAA_03096 PF08411 Exonuclease C-terminal VAA_03097 PF03788 VAA_03097 VAA_03098 PF04172 VAA_03098 VAA_03099 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_03099 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_03100 PF00563 EAL domain VAA_03100 PF00990 GGDEF domain VAA_03100 PF05228 VAA_03100 VAA_03100 PF13426 PAS domain VAA_03101 PF01370 NAD dependent epimerase/dehydratase family VAA_03101 PF02222 ATP-grasp domain VAA_03102 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03102 PF13426 PAS domain VAA_03104 PF05724 Thiopurine S-methyltransferase (TPMT) VAA_03106 PF00216 Bacterial DNA-binding protein VAA_03107 PF01588 Putative tRNA binding domain VAA_03107 PF03147 Ferredoxin-fold anticodon binding domain VAA_03107 PF03483 B3/4 domain VAA_03107 PF03484 tRNA synthetase B5 domain VAA_03108 PF01409 tRNA synthetases class II core domain (F) VAA_03109 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VAA_03110 PF00583 Acetyltransferase (GNAT) family VAA_03111 PF16966 VAA_03111 VAA_03114 PF01066 CDP-alcohol phosphatidyltransferase VAA_03115 PF01541 GIY-YIG catalytic domain VAA_03115 PF02151 UvrB/uvrC motif VAA_03115 PF08459 UvrC Helix-hairpin-helix N-terminal VAA_03115 PF14520 Helix-hairpin-helix domain VAA_03116 PF00072 Response regulator receiver domain VAA_03116 PF00196 Bacterial regulatory proteins, luxR family VAA_03117 PF00136 DNA polymerase family B VAA_03117 PF03104 DNA polymerase family B, exonuclease domain VAA_03119 PF01132 Elongation factor P (EF-P) OB domain VAA_03119 PF08207 Elongation factor P (EF-P) KOW-like domain VAA_03119 PF09285 Elongation factor P, C-terminal VAA_03120 PF04269 Protein of unknown function, DUF440 VAA_03122 PF04266 ASCH domain VAA_03123 PF00392 Bacterial regulatory proteins, gntR family VAA_03123 PF07702 UTRA domain VAA_03124 PF01979 Amidohydrolase family VAA_03125 PF00491 Arginase family VAA_03126 PF01175 Urocanase VAA_03126 PF17391 VAA_03126 VAA_03126 PF17392 VAA_03126 VAA_03127 PF00221 Aromatic amino acid lyase VAA_03128 PF12119 VAA_03128 VAA_03130 PF01565 FAD binding domain VAA_03130 PF02913 FAD linked oxidases, C-terminal domain VAA_03130 PF13183 4Fe-4S dicluster domain VAA_03131 PF11813 VAA_03131 VAA_03132 PF10979 VAA_03132 VAA_03133 PF08238 Sel1 repeat VAA_03137 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VAA_03137 PF02770 Acyl-CoA dehydrogenase, middle domain VAA_03137 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VAA_03137 PF09317 VAA_03137 VAA_03138 PF00440 Bacterial regulatory proteins, tetR family VAA_03140 PF07383 VAA_03140 VAA_03141 PF00171 Aldehyde dehydrogenase family VAA_03142 PF00990 GGDEF domain VAA_03143 PF09084 NMT1/THI5 like VAA_03145 PF10117 VAA_03145 VAA_03146 PF07728 AAA domain (dynein-related subfamily) VAA_03151 PF13174 Tetratricopeptide repeat VAA_03151 PF13432 Tetratricopeptide repeat VAA_03151 PF16331 VAA_03151 VAA_03152 PF00691 OmpA family VAA_03153 PF04052 TolB amino-terminal domain VAA_03153 PF07676 WD40-like Beta Propeller Repeat VAA_03154 PF06519 TolA C-terminal VAA_03155 PF02472 Biopolymer transport protein ExbD/TolR VAA_03156 PF01618 VAA_03156 VAA_03157 PF03061 Thioesterase superfamily VAA_03158 PF09600 VAA_03158 VAA_03159 PF08173 VAA_03159 VAA_03160 PF02322 VAA_03160 VAA_03161 PF01654 VAA_03161 VAA_03163 PF05491 Holliday junction DNA helicase ruvB C-terminus VAA_03163 PF05496 Holliday junction DNA helicase ruvB N-terminus VAA_03164 PF01330 RuvA N terminal domain VAA_03164 PF07499 RuvA, C-terminal domain VAA_03164 PF14520 Helix-hairpin-helix domain VAA_03165 PF02075 Crossover junction endodeoxyribonuclease RuvC VAA_03166 PF01406 tRNA synthetases class I (C) catalytic domain VAA_03166 PF09190 DALR domain VAA_03167 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VAA_03168 PF12850 Calcineurin-like phosphoesterase superfamily domain VAA_03170 PF00563 EAL domain VAA_03170 PF08668 HDOD domain VAA_03173 PF06733 DEAD_2 VAA_03173 PF13307 Helicase C-terminal domain VAA_03174 PF01925 VAA_03174 VAA_03175 PF07445 Primosomal replication protein priB and priC VAA_03176 PF10689 VAA_03176 VAA_03177 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03177 PF00672 HAMP domain VAA_03177 PF02743 Cache domain VAA_03178 PF03372 Endonuclease/Exonuclease/phosphatase family VAA_03179 PF00528 Binding-protein-dependent transport system inner membrane component VAA_03180 PF00528 Binding-protein-dependent transport system inner membrane component VAA_03181 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_03182 PF00005 ABC transporter VAA_03183 PF11840 VAA_03183 VAA_03184 PF01228 Glycine radical VAA_03184 PF02901 Pyruvate formate lyase VAA_03186 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) VAA_03188 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03189 PF04055 Radical SAM superfamily VAA_03189 PF13353 4Fe-4S single cluster domain VAA_03190 PF01891 Cobalt uptake substrate-specific transmembrane region VAA_03191 PF03887 YfbU domain VAA_03192 PF06798 VAA_03192 VAA_03192 PF08298 PrkA AAA domain VAA_03194 PF04285 VAA_03194 VAA_03195 PF04293 VAA_03195 VAA_03196 PF01292 Prokaryotic cytochrome b561 VAA_03197 PF02348 Cytidylyltransferase VAA_03198 PF03966 Trm112p-like protein VAA_03199 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VAA_03200 PF00005 ABC transporter VAA_03200 PF00664 ABC transporter transmembrane region VAA_03201 PF00753 Metallo-beta-lactamase superfamily VAA_03201 PF03772 VAA_03201 VAA_03202 PF09835 VAA_03202 VAA_03203 PF02687 VAA_03203 VAA_03203 PF12704 MacB-like periplasmic core domain VAA_03204 PF00005 ABC transporter VAA_03205 PF02687 VAA_03205 VAA_03205 PF12704 MacB-like periplasmic core domain VAA_03207 PF00270 DEAD/DEAH box helicase VAA_03207 PF00271 Helicase conserved C-terminal domain VAA_03207 PF02559 CarD-like/TRCF domain VAA_03207 PF03461 TRCF domain VAA_03208 PF10972 VAA_03208 VAA_03209 PF16458 VAA_03209 VAA_0321 PF00392 Bacterial regulatory proteins, gntR family VAA_0321 PF07840 FadR C-terminal domain VAA_03211 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_03212 PF05728 Uncharacterised protein family (UPF0227) VAA_03213 PF01636 Phosphotransferase enzyme family VAA_03214 PF13036 Protein of unknown function (DUF3897) VAA_03216 PF07233 Protein of unknown function (DUF1425) VAA_03218 PF01230 HIT domain VAA_03219 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03220 PF09002 Domain of unknown function (DUF1887) VAA_03224 PF06450 VAA_03224 VAA_03225 PF02600 Disulfide bond formation protein DsbB VAA_03226 PF13500 AAA domain VAA_03227 PF08241 Methyltransferase domain VAA_03228 PF00005 ABC transporter VAA_03229 PF00155 Aminotransferase class I and II VAA_03230 PF04055 Radical SAM superfamily VAA_03230 PF06968 Biotin and Thiamin Synthesis associated domain VAA_03231 PF00202 Aminotransferase class-III VAA_03232 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA_03232 PF02403 Seryl-tRNA synthetase N-terminal domain VAA_03233 PF00004 ATPase family associated with various cellular activities (AAA) VAA_03233 PF12002 MgsA AAA+ ATPase C terminal VAA_03233 PF16193 VAA_03233 VAA_03234 PF03548 Outer membrane lipoprotein carrier protein LolA VAA_03236 PF02810 SEC-C motif VAA_03236 PF03695 Uncharacterised protein family (UPF0149) VAA_03237 PF01207 Dihydrouridine synthase (Dus) VAA_03239 PF02653 VAA_03239 VAA_03240 PF04392 ABC transporter substrate binding protein VAA_03241 PF04217 VAA_03241 VAA_03242 PF00871 Acetokinase family VAA_03243 PF01515 Phosphate acetyl/butaryl transferase VAA_03243 PF07085 DRTGG domain VAA_03243 PF13500 AAA domain VAA_03244 PF13409 Glutathione S-transferase, N-terminal domain VAA_03244 PF13410 Glutathione S-transferase, C-terminal domain VAA_03245 PF00005 ABC transporter VAA_03245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_03246 PF00005 ABC transporter VAA_03246 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA_03247 PF00528 Binding-protein-dependent transport system inner membrane component VAA_03247 PF12911 VAA_03247 VAA_03248 PF00528 Binding-protein-dependent transport system inner membrane component VAA_03250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_03252 PF00072 Response regulator receiver domain VAA_03252 PF00196 Bacterial regulatory proteins, luxR family VAA_03252 PF00563 EAL domain VAA_03253 PF00072 Response regulator receiver domain VAA_03253 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_03253 PF00512 His Kinase A (phospho-acceptor) domain VAA_03253 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03254 PF01494 FAD binding domain VAA_03256 PF00891 O-methyltransferase VAA_03257 PF13723 VAA_03257 VAA_03258 PF01553 Acyltransferase VAA_03259 PF00550 Phosphopantetheine attachment site VAA_03260 PF00550 Phosphopantetheine attachment site VAA_03261 PF04279 VAA_03261 VAA_03262 PF00501 AMP-binding enzyme VAA_03264 PF00535 Glycosyl transferase family 2 VAA_03264 PF03279 VAA_03264 VAA_03265 PF00221 Aromatic amino acid lyase VAA_03266 PF13279 Thioesterase-like superfamily VAA_03267 PF03548 Outer membrane lipoprotein carrier protein LolA VAA_03268 PF03176 MMPL family VAA_03269 PF11659 VAA_03269 VAA_03270 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA_03270 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA_03272 PF13561 Enoyl-(Acyl carrier protein) reductase VAA_03273 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA_03273 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA_03274 PF06629 VAA_03274 VAA_03275 PF13175 AAA ATPase domain VAA_03276 PF00892 EamA-like transporter family VAA_03277 PF01081 KDPG and KHG aldolase VAA_03278 PF02447 VAA_03278 VAA_03279 PF01202 Shikimate kinase VAA_03280 PF00920 Dehydratase family VAA_03281 PF00356 Bacterial regulatory proteins, lacI family VAA_03281 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA_03285 PF00512 His Kinase A (phospho-acceptor) domain VAA_03285 PF00672 HAMP domain VAA_03285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03286 PF00072 Response regulator receiver domain VAA_03286 PF00486 Transcriptional regulatory protein, C terminal VAA_03287 PF02080 TrkA-C domain VAA_03287 PF06826 VAA_03287 VAA_03288 PF01810 VAA_03288 VAA_03290 PF01037 AsnC family VAA_03290 PF13412 Winged helix-turn-helix DNA-binding VAA_03291 PF00884 Sulfatase VAA_03291 PF08019 VAA_03291 VAA_03292 PF00512 His Kinase A (phospho-acceptor) domain VAA_03292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03292 PF08521 VAA_03292 VAA_03293 PF00072 Response regulator receiver domain VAA_03293 PF00486 Transcriptional regulatory protein, C terminal VAA_03295 PF00106 short chain dehydrogenase VAA_03296 PF14518 Iron-containing redox enzyme VAA_03297 PF00501 AMP-binding enzyme VAA_03298 PF12261 VAA_03298 VAA_03299 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA_03300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03300 PF03466 LysR substrate binding domain VAA_03301 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA_03301 PF00990 GGDEF domain VAA_03303 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VAA_03304 PF09619 Type III secretion system lipoprotein chaperone (YscW) VAA_03305 PF13622 Thioesterase-like superfamily VAA_03306 PF01037 AsnC family VAA_03306 PF13412 Winged helix-turn-helix DNA-binding VAA_03307 PF00291 Pyridoxal-phosphate dependent enzyme VAA_03308 PF04280 Tim44-like domain VAA_03308 PF07466 VAA_03308 VAA_03309 PF13305 WHG domain VAA_03310 PF01553 Acyltransferase VAA_03310 PF07690 Major Facilitator Superfamily VAA_03312 PF04134 VAA_03312 VAA_03313 PF00501 AMP-binding enzyme VAA_03313 PF13193 AMP-binding enzyme C-terminal domain VAA_03314 PF13378 Enolase C-terminal domain-like VAA_03315 PF00378 Enoyl-CoA hydratase/isomerase family VAA_03316 PF12697 Alpha/beta hydrolase family VAA_03317 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_03317 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_03317 PF16582 VAA_03317 VAA_03318 PF00425 chorismate binding enzyme VAA_03319 PF00155 Aminotransferase class I and II VAA_03321 PF01966 HD domain VAA_03321 PF13286 Phosphohydrolase-associated domain VAA_03322 PF03942 VAA_03322 VAA_03323 PF01694 Rhomboid family VAA_03324 PF01343 Peptidase family S49 VAA_03324 PF08496 VAA_03324 VAA_03325 PF00106 short chain dehydrogenase VAA_03326 PF00072 Response regulator receiver domain VAA_03326 PF01584 CheW-like domain VAA_03327 PF00480 ROK family VAA_03328 PF00224 Pyruvate kinase, barrel domain VAA_03328 PF02887 Pyruvate kinase, alpha/beta domain VAA_03329 PF01734 Patatin-like phospholipase VAA_03331 PF13505 Outer membrane protein beta-barrel domain VAA_03332 PF00209 Sodium:neurotransmitter symporter family VAA_03335 PF00367 phosphotransferase system, EIIB VAA_03335 PF02378 Phosphotransferase system, EIIC VAA_03336 PF01026 TatD related DNase VAA_03337 PF09115 DNA polymerase III, delta subunit, C terminal VAA_03337 PF13177 DNA polymerase III, delta subunit VAA_03338 PF02223 Thymidylate kinase VAA_03339 PF02618 YceG-like family VAA_03340 PF01063 Aminotransferase class IV VAA_03341 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA_03341 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA_03342 PF00550 Phosphopantetheine attachment site VAA_03343 PF13561 Enoyl-(Acyl carrier protein) reductase VAA_03344 PF00698 Acyl transferase domain VAA_03345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VAA_03345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VAA_03346 PF02504 Fatty acid synthesis protein VAA_03347 PF01783 Ribosomal L32p protein family VAA_03348 PF02620 VAA_03348 VAA_03349 PF02545 Maf-like protein VAA_03350 PF00849 RNA pseudouridylate synthase VAA_03350 PF01479 S4 domain VAA_03351 PF00575 S1 RNA binding domain VAA_03351 PF10150 Ribonuclease E/G family VAA_03354 PF00171 Aldehyde dehydrogenase family VAA_03354 PF00465 Iron-containing alcohol dehydrogenase VAA_03355 PF01914 VAA_03355 VAA_03356 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA_03356 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA_03357 PF03553 VAA_03357 VAA_03358 PF01627 Hpt domain VAA_03359 PF04245 VAA_03359 VAA_03360 PF07208 Protein of unknown function (DUF1414) VAA_03361 PF00884 Sulfatase VAA_03361 PF11893 VAA_03361 VAA_03362 PF00384 Molybdopterin oxidoreductase VAA_03362 PF01568 Molydopterin dinucleotide binding domain VAA_03363 PF02634 FdhD/NarQ family VAA_03366 PF01131 DNA topoisomerase VAA_03366 PF01751 Toprim domain VAA_03367 PF00462 Glutaredoxin VAA_03368 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VAA_03368 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VAA_03369 PF11993 VAA_03369 VAA_03370 PF00106 short chain dehydrogenase VAA_03371 PF04333 VAA_03371 VAA_03372 PF14559 Tetratricopeptide repeat VAA_03373 PF03918 Cytochrome C biogenesis protein VAA_03374 PF08534 Redoxin VAA_03375 PF01578 VAA_03375 VAA_03375 PF16327 VAA_03375 VAA_03376 PF03100 CcmE VAA_03377 PF04995 VAA_03377 VAA_03378 PF01578 VAA_03378 VAA_03379 PF03379 VAA_03379 VAA_03380 PF00005 ABC transporter VAA_03381 PF10975 VAA_03381 VAA_03382 PF01584 CheW-like domain VAA_03383 PF01584 CheW-like domain VAA_03384 PF13614 AAA domain VAA_03385 PF00072 Response regulator receiver domain VAA_03385 PF01339 CheB methylesterase VAA_03386 PF01584 CheW-like domain VAA_03386 PF01627 Hpt domain VAA_03386 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03386 PF02895 Signal transducing histidine kinase, homodimeric domain VAA_03387 PF04344 Chemotaxis phosphatase, CheZ VAA_03388 PF00072 Response regulator receiver domain VAA_03389 PF04539 Sigma-70 region 3 VAA_03389 PF04542 Sigma-70 region 2 VAA_03389 PF04545 Sigma-70, region 4 VAA_03390 PF13614 AAA domain VAA_03391 PF00448 SRP54-type protein, GTPase domain VAA_03392 PF00771 FHIPEP family VAA_03393 PF00300 Histidine phosphatase superfamily (branch 1) VAA_03394 PF00675 Insulinase (Peptidase family M16) VAA_03394 PF05193 Peptidase M16 inactive domain VAA_03394 PF16187 VAA_03394 VAA_03395 PF06185 YecM protein VAA_03396 PF00750 tRNA synthetases class I (R) VAA_03396 PF03485 Arginyl tRNA synthetase N terminal domain VAA_03396 PF05746 DALR anticodon binding domain VAA_03397 PF01230 HIT domain VAA_03398 PF09012 FeoC like transcriptional regulator VAA_03399 PF02421 Ferrous iron transport protein B VAA_03399 PF07664 VAA_03399 VAA_03399 PF07670 Nucleoside recognition VAA_03400 PF04023 FeoA domain VAA_03402 PF12833 Helix-turn-helix domain VAA_03405 PF00005 ABC transporter VAA_03406 PF00950 VAA_03406 VAA_03407 PF00549 CoA-ligase VAA_03407 PF02629 CoA binding domain VAA_03408 PF00549 CoA-ligase VAA_03408 PF08442 ATP-grasp domain VAA_03409 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VAA_03409 PF00364 Biotin-requiring enzyme VAA_03409 PF02817 e3 binding domain VAA_03410 PF00676 Dehydrogenase E1 component VAA_03410 PF02779 Transketolase, pyrimidine binding domain VAA_03410 PF16078 VAA_03410 VAA_03410 PF16870 VAA_03410 VAA_03412 PF13085 2Fe-2S iron-sulfur cluster binding domain VAA_03412 PF13534 4Fe-4S dicluster domain VAA_03413 PF00890 FAD binding domain VAA_03413 PF02910 Fumarate reductase flavoprotein C-term VAA_03414 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VAA_03415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VAA_03416 PF00285 Citrate synthase VAA_03418 PF01784 NIF3 (NGG1p interacting factor 3) VAA_03419 PF08907 VAA_03419 VAA_03420 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA_03420 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA_03420 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA_03420 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA_03421 PF03925 SeqA protein VAA_03421 PF17206 VAA_03421 VAA_03422 PF12697 Alpha/beta hydrolase family VAA_03423 PF10981 VAA_03423 VAA_03424 PF00258 Flavodoxin VAA_03425 PF04172 VAA_03425 VAA_03426 PF03788 VAA_03426 VAA_03427 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03427 PF03466 LysR substrate binding domain VAA_03428 PF14539 Domain of unknown function (DUF4442) VAA_03429 PF01475 Ferric uptake regulator family VAA_03430 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA_03430 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA_03431 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA_03431 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_03431 PF11890 Domain of unknown function (DUF3410) VAA_03432 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA_03432 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA_03433 PF01266 FAD dependent oxidoreductase VAA_03433 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VAA_03434 PF03358 NADPH-dependent FMN reductase VAA_03436 PF08891 VAA_03436 VAA_03437 PF04315 VAA_03437 VAA_03438 PF03458 VAA_03438 VAA_03439 PF01264 Chorismate synthase VAA_03441 PF05175 Methyltransferase small domain VAA_03442 PF01713 Smr domain VAA_03443 PF01312 FlhB HrpN YscU SpaS Family VAA_03444 PF01311 VAA_03444 VAA_03445 PF01313 VAA_03445 VAA_03446 PF00813 VAA_03446 VAA_03447 PF04347 VAA_03447 VAA_03448 PF01052 Surface presentation of antigens (SPOA) VAA_03449 PF01052 Surface presentation of antigens (SPOA) VAA_03449 PF02154 Flagellar motor switch protein FliM VAA_03450 PF03748 VAA_03450 VAA_03451 PF02120 Flagellar hook-length control protein FliK VAA_03453 PF02050 Flagellar FliJ protein VAA_03455 PF02108 VAA_03455 VAA_03456 PF01706 FliG C-terminal domain VAA_03456 PF14841 FliG middle domain VAA_03456 PF14842 FliG N-terminal domain VAA_03458 PF01514 Secretory protein of YscJ/FliF family VAA_03458 PF08345 VAA_03458 VAA_03459 PF02049 VAA_03459 VAA_03460 PF00072 Response regulator receiver domain VAA_03460 PF00158 Sigma-54 interaction domain VAA_03460 PF02954 Bacterial regulatory protein, Fis family VAA_03461 PF00512 His Kinase A (phospho-acceptor) domain VAA_03461 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03461 PF13188 PAS domain VAA_03462 PF00158 Sigma-54 interaction domain VAA_03462 PF02954 Bacterial regulatory protein, Fis family VAA_03462 PF06490 VAA_03462 VAA_03463 PF02561 Flagellar protein FliS VAA_03465 PF02465 VAA_03465 VAA_03465 PF07195 VAA_03465 VAA_03465 PF07196 Flagellin hook IN motif VAA_03466 PF03646 FlaG protein VAA_03467 PF00669 Bacterial flagellin N-terminal helical region VAA_03467 PF00700 Bacterial flagellin C-terminal helical region VAA_03467 PF07196 Flagellin hook IN motif VAA_03469 PF00669 Bacterial flagellin N-terminal helical region VAA_03469 PF00700 Bacterial flagellin C-terminal helical region VAA_03469 PF07196 Flagellin hook IN motif VAA_03470 PF00669 Bacterial flagellin N-terminal helical region VAA_03470 PF00700 Bacterial flagellin C-terminal helical region VAA_03470 PF07196 Flagellin hook IN motif VAA_03472 PF04261 Dyp-type peroxidase family VAA_03473 PF11143 VAA_03473 VAA_03474 PF11169 VAA_03474 VAA_03475 PF13698 VAA_03475 VAA_03476 PF09904 Winged helix-turn helix VAA_03477 PF03960 ArsC family VAA_03478 PF01546 Peptidase family M20/M25/M40 VAA_03478 PF07687 Peptidase dimerisation domain VAA_03479 PF02557 D-alanyl-D-alanine carboxypeptidase VAA_03480 PF11446 VAA_03480 VAA_03481 PF06804 NlpB/DapX lipoprotein VAA_03482 PF00701 Dihydrodipicolinate synthetase family VAA_03484 PF13740 ACT domain VAA_03485 PF00578 AhpC/TSA family VAA_03486 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03486 PF00672 HAMP domain VAA_03486 PF02743 Cache domain VAA_03487 PF01594 VAA_03487 VAA_03488 PF01206 Sulfurtransferase TusA VAA_03490 PF01435 Peptidase family M48 VAA_03490 PF14559 Tetratricopeptide repeat VAA_03491 PF03960 ArsC family VAA_03492 PF03358 NADPH-dependent FMN reductase VAA_03493 PF09842 VAA_03493 VAA_03494 PF09839 VAA_03494 VAA_03495 PF00860 Permease family VAA_03496 PF04073 Aminoacyl-tRNA editing domain VAA_03497 PF00149 Calcineurin-like phosphoesterase VAA_03497 PF02872 5'-nucleotidase, C-terminal domain VAA_03498 PF00793 DAHP synthetase I family VAA_03499 PF13369 VAA_03499 VAA_03499 PF13371 Tetratricopeptide repeat VAA_03500 PF04247 VAA_03500 VAA_03501 PF13847 Methyltransferase domain VAA_03502 PF00472 RF-1 domain VAA_03502 PF03462 PCRF domain VAA_03503 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VAA_03503 PF01488 Shikimate / quinate 5-dehydrogenase VAA_03503 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VAA_03504 PF03550 Outer membrane lipoprotein LolB VAA_03506 PF00288 GHMP kinases N terminal domain VAA_03506 PF08544 GHMP kinases C terminal VAA_03507 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VAA_03507 PF14572 Phosphoribosyl synthetase-associated domain VAA_03508 PF01195 Peptidyl-tRNA hydrolase VAA_03510 PF00669 Bacterial flagellin N-terminal helical region VAA_03510 PF00700 Bacterial flagellin C-terminal helical region VAA_03510 PF07196 Flagellin hook IN motif VAA_03511 PF00669 Bacterial flagellin N-terminal helical region VAA_03511 PF00700 Bacterial flagellin C-terminal helical region VAA_03511 PF07196 Flagellin hook IN motif VAA_03512 PF00669 Bacterial flagellin N-terminal helical region VAA_03512 PF00700 Bacterial flagellin C-terminal helical region VAA_03513 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03514 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VAA_03514 PF10135 VAA_03514 VAA_03515 PF02119 VAA_03515 VAA_03516 PF02107 VAA_03516 VAA_03517 PF00460 Flagella basal body rod protein VAA_03517 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03518 PF00460 Flagella basal body rod protein VAA_03518 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03520 PF00460 Flagella basal body rod protein VAA_03520 PF07559 Flagellar basal body protein FlaE VAA_03521 PF03963 VAA_03521 VAA_03521 PF13860 FlgD Ig-like domain VAA_03521 PF13861 FlgD Tudor-like domain VAA_03522 PF00460 Flagella basal body rod protein VAA_03522 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA_03524 PF01739 CheR methyltransferase, SAM binding domain VAA_03524 PF03705 CheR methyltransferase, all-alpha domain VAA_03525 PF00072 Response regulator receiver domain VAA_03525 PF01584 CheW-like domain VAA_03526 PF13144 SAF-like VAA_03527 PF04316 Anti-sigma-28 factor, FlgM VAA_03528 PF05130 FlgN protein VAA_03529 PF02169 LPP20 lipoprotein VAA_03532 PF16538 VAA_03532 VAA_03532 PF16539 VAA_03532 VAA_03532 PF16548 VAA_03532 VAA_03534 PF00691 OmpA family VAA_03534 PF01389 OmpA-like transmembrane domain VAA_03535 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA_03537 PF00122 E1-E2 ATPase VAA_03537 PF00403 Heavy-metal-associated domain VAA_03537 PF00702 haloacid dehalogenase-like hydrolase VAA_03538 PF04214 VAA_03538 VAA_03539 PF00728 Glycosyl hydrolase family 20, catalytic domain VAA_03539 PF02838 Glycosyl hydrolase family 20, domain 2 VAA_03539 PF03173 Putative carbohydrate binding domain VAA_03539 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VAA_03540 PF11346 VAA_03540 VAA_03541 PF00849 RNA pseudouridylate synthase VAA_03541 PF01479 S4 domain VAA_03542 PF14681 Uracil phosphoribosyltransferase VAA_03543 PF00586 AIR synthase related protein, N-terminal domain VAA_03543 PF02769 AIR synthase related protein, C-terminal domain VAA_03544 PF00551 Formyl transferase VAA_03546 PF13230 Glutamine amidotransferases class-II VAA_03547 PF13580 SIS domain VAA_03548 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VAA_03548 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VAA_03548 PF09317 VAA_03548 VAA_03550 PF00929 Exonuclease VAA_03551 PF00075 RNase H VAA_03552 PF08241 Methyltransferase domain VAA_03553 PF00753 Metallo-beta-lactamase superfamily VAA_03553 PF16123 VAA_03553 VAA_03554 PF01464 Transglycosylase SLT domain VAA_03554 PF01476 LysM domain VAA_03555 PF06930 VAA_03555 VAA_03556 PF03372 Endonuclease/Exonuclease/phosphatase family VAA_03557 PF00543 Nitrogen regulatory protein P-II VAA_03558 PF00034 Cytochrome c VAA_03559 PF01171 PP-loop family VAA_03559 PF09179 TilS substrate binding domain VAA_03559 PF11734 TilS substrate C-terminal domain VAA_03561 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VAA_03562 PF01336 OB-fold nucleic acid binding domain VAA_03562 PF02811 PHP domain VAA_03562 PF07733 Bacterial DNA polymerase III alpha subunit VAA_03562 PF14579 Helix-hairpin-helix motif VAA_03563 PF01351 Ribonuclease HII VAA_03564 PF02684 VAA_03564 VAA_03565 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_03565 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VAA_03566 PF07977 FabA-like domain VAA_03567 PF00132 Bacterial transferase hexapeptide (six repeats) VAA_03567 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VAA_03567 PF14602 Hexapeptide repeat of succinyl-transferase VAA_03568 PF03938 Outer membrane protein (OmpH-like) VAA_03569 PF01103 Surface antigen VAA_03569 PF07244 Surface antigen variable number repeat VAA_03570 PF02163 Peptidase family M50 VAA_03570 PF13180 PDZ domain VAA_03571 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VAA_03571 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal VAA_03571 PF13288 DXP reductoisomerase C-terminal domain VAA_03572 PF01148 Cytidylyltransferase family VAA_03573 PF01255 Putative undecaprenyl diphosphate synthase VAA_03574 PF01765 Ribosome recycling factor VAA_03575 PF00696 Amino acid kinase family VAA_03576 PF00889 Elongation factor TS VAA_03577 PF00318 Ribosomal protein S2 VAA_03578 PF00557 Metallopeptidase family M24 VAA_03579 PF01842 ACT domain VAA_03579 PF01909 Nucleotidyltransferase domain VAA_03579 PF01966 HD domain VAA_03579 PF08335 GlnD PII-uridylyltransferase VAA_03580 PF11944 VAA_03580 VAA_03582 PF04608 Phosphatidylglycerophosphatase A VAA_03583 PF00586 AIR synthase related protein, N-terminal domain VAA_03583 PF02769 AIR synthase related protein, C-terminal domain VAA_03585 PF01029 NusB family VAA_03586 PF00885 6,7-dimethyl-8-ribityllumazine synthase VAA_03588 PF00677 Lumazine binding domain VAA_03589 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA_03589 PF01872 RibD C-terminal domain VAA_03590 PF03477 ATP cone domain VAA_03592 PF00171 Aldehyde dehydrogenase family VAA_03593 PF00696 Amino acid kinase family VAA_03593 PF01472 PUA domain VAA_03594 PF07417 Transcriptional regulator Crl VAA_03596 PF00156 Phosphoribosyl transferase domain VAA_03597 PF00860 Permease family VAA_03599 PF01546 Peptidase family M20/M25/M40 VAA_03599 PF07687 Peptidase dimerisation domain VAA_03600 PF05618 Putative ATP-dependant zinc protease VAA_03601 PF08443 RimK-like ATP-grasp domain VAA_03602 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VAA_03603 PF00209 Sodium:neurotransmitter symporter family VAA_03605 PF00990 GGDEF domain VAA_03606 PF11101 VAA_03606 VAA_03607 PF00817 impB/mucB/samB family VAA_03607 PF11799 impB/mucB/samB family C-terminal domain VAA_03608 PF04400 VAA_03608 VAA_03609 PF02424 ApbE family VAA_03611 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA_03611 PF00175 Oxidoreductase NAD-binding domain VAA_03611 PF00970 Oxidoreductase FAD-binding domain VAA_03612 PF02508 VAA_03612 VAA_03613 PF02508 VAA_03613 VAA_03614 PF04205 FMN-binding domain VAA_03615 PF03116 VAA_03615 VAA_03616 PF05896 VAA_03616 VAA_03616 PF11973 VAA_03616 VAA_03617 PF01722 BolA-like protein VAA_03618 PF05175 Methyltransferase small domain VAA_03619 PF03923 VAA_03619 VAA_03620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VAA_03621 PF07690 Major Facilitator Superfamily VAA_03622 PF12973 ChrR Cupin-like domain VAA_03623 PF04542 Sigma-70 region 2 VAA_03623 PF04545 Sigma-70, region 4 VAA_03624 PF02190 ATP-dependent protease La (LON) domain VAA_03625 PF03502 Nucleoside-specific channel-forming protein, Tsx VAA_03626 PF02558 Ketopantoate reductase PanE/ApbA VAA_03626 PF08546 Ketopantoate reductase PanE/ApbA C terminal VAA_03627 PF01965 DJ-1/PfpI family VAA_03628 PF00266 Aminotransferase class-V VAA_03629 PF02657 Fe-S metabolism associated domain VAA_03630 PF00899 ThiF family VAA_03631 PF03562 MltA specific insert domain VAA_03631 PF06725 3D domain VAA_03632 PF11012 VAA_03632 VAA_03633 PF00583 Acetyltransferase (GNAT) family VAA_03633 PF00696 Amino acid kinase family VAA_03635 PF13538 UvrD-like helicase C-terminal domain VAA_03635 PF13604 AAA domain VAA_03636 PF00580 UvrD/REP helicase N-terminal domain VAA_03636 PF12705 PD-(D/E)XK nuclease superfamily VAA_03636 PF13361 UvrD-like helicase C-terminal domain VAA_03637 PF04257 Exodeoxyribonuclease V, gamma subunit VAA_03638 PF03595 Voltage-dependent anion channel VAA_03639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03639 PF03466 LysR substrate binding domain VAA_03640 PF07130 YebG protein VAA_03641 PF14602 Hexapeptide repeat of succinyl-transferase VAA_03641 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VAA_03642 PF05940 VAA_03642 VAA_03643 PF00583 Acetyltransferase (GNAT) family VAA_03643 PF11814 VAA_03643 VAA_03645 PF14401 VAA_03645 VAA_03646 PF01544 CorA-like Mg2+ transporter protein VAA_03647 PF06094 AIG2-like family VAA_03648 PF00356 Bacterial regulatory proteins, lacI family VAA_03648 PF13377 Periplasmic binding protein-like domain VAA_03650 PF00288 GHMP kinases N terminal domain VAA_03650 PF01263 Aldose 1-epimerase VAA_03650 PF08544 GHMP kinases C terminal VAA_03650 PF10509 Galactokinase galactose-binding signature VAA_03651 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VAA_03651 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VAA_03652 PF16363 VAA_03652 VAA_03655 PF01554 MatE VAA_03655 PF14667 Polysaccharide biosynthesis C-terminal domain VAA_03656 PF02417 VAA_03656 VAA_03658 PF13487 HD domain VAA_03659 PF00501 AMP-binding enzyme VAA_03660 PF09905 Uncharacterized conserved protein (DUF2132) VAA_03662 PF00009 Elongation factor Tu GTP binding domain VAA_03662 PF03144 Elongation factor Tu domain 2 VAA_03662 PF14492 Elongation Factor G, domain II VAA_03663 PF13481 AAA domain VAA_03663 PF13541 Subunit ChlI of Mg-chelatase VAA_03665 PF07238 PilZ domain VAA_03666 PF00702 haloacid dehalogenase-like hydrolase VAA_03667 PF10144 VAA_03667 VAA_03668 PF01048 Phosphorylase superfamily VAA_03669 PF01676 Metalloenzyme superfamily VAA_03670 PF00591 Glycosyl transferase family, a/b domain VAA_03670 PF02885 Glycosyl transferase family, helical bundle domain VAA_03670 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VAA_03671 PF01791 DeoC/LacD family aldolase VAA_03672 PF01773 Na+ dependent nucleoside transporter N-terminus VAA_03672 PF07662 Na+ dependent nucleoside transporter C-terminus VAA_03672 PF07670 Nucleoside recognition VAA_03673 PF01026 TatD related DNase VAA_03674 PF17320 VAA_03674 VAA_03675 PF03883 VAA_03675 VAA_03676 PF01235 VAA_03676 VAA_03677 PF12065 VAA_03677 VAA_03678 PF01814 Hemerythrin HHE cation binding domain VAA_03679 PF03167 Uracil DNA glycosylase superfamily VAA_03680 PF01261 Xylose isomerase-like TIM barrel VAA_03681 PF01228 Glycine radical VAA_03682 PF00291 Pyridoxal-phosphate dependent enzyme VAA_03682 PF14821 Threonine synthase N terminus VAA_03683 PF00288 GHMP kinases N terminal domain VAA_03683 PF08544 GHMP kinases C terminal VAA_03684 PF00696 Amino acid kinase family VAA_03684 PF00742 Homoserine dehydrogenase VAA_03684 PF01842 ACT domain VAA_03684 PF03447 Homoserine dehydrogenase, NAD binding domain VAA_03684 PF13840 ACT domain VAA_03686 PF03737 Demethylmenaquinone methyltransferase VAA_03687 PF00072 Response regulator receiver domain VAA_03687 PF00486 Transcriptional regulatory protein, C terminal VAA_03689 PF00072 Response regulator receiver domain VAA_03689 PF00512 His Kinase A (phospho-acceptor) domain VAA_03689 PF01627 Hpt domain VAA_03689 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03689 PF08448 PAS fold VAA_03690 PF04055 Radical SAM superfamily VAA_03690 PF16199 VAA_03690 VAA_03691 PF00310 Glutamine amidotransferases class-II VAA_03691 PF01493 GXGXG motif VAA_03691 PF01645 Conserved region in glutamate synthase VAA_03691 PF04898 Glutamate synthase central domain VAA_03692 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_03692 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VAA_03693 PF00310 Glutamine amidotransferases class-II VAA_03693 PF01493 GXGXG motif VAA_03693 PF01645 Conserved region in glutamate synthase VAA_03693 PF04898 Glutamate synthase central domain VAA_03694 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA_03694 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VAA_03696 PF07386 VAA_03696 VAA_03697 PF01048 Phosphorylase superfamily VAA_03698 PF03186 VAA_03698 VAA_03699 PF01497 Periplasmic binding protein VAA_03700 PF03458 VAA_03700 VAA_03701 PF01925 VAA_03701 VAA_03703 PF02142 MGS-like domain VAA_03703 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VAA_03703 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VAA_03704 PF00117 Glutamine amidotransferase class-I VAA_03704 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VAA_03706 PF01113 Dihydrodipicolinate reductase, N-terminus VAA_03706 PF05173 Dihydrodipicolinate reductase, C-terminus VAA_03707 PF00293 NUDIX domain VAA_03708 PF01043 SecA preprotein cross-linking domain VAA_03708 PF02810 SEC-C motif VAA_03708 PF07516 SecA Wing and Scaffold domain VAA_03708 PF07517 SecA DEAD-like domain VAA_03709 PF05258 VAA_03709 VAA_03710 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VAA_03711 PF00091 Tubulin/FtsZ family, GTPase domain VAA_03711 PF12327 FtsZ family, C-terminal domain VAA_03712 PF02491 SHS2 domain inserted in FTSA VAA_03712 PF14450 Cell division protein FtsA VAA_03713 PF03799 Cell division protein FtsQ VAA_03713 PF08478 POTRA domain, FtsQ-type VAA_03715 PF01225 Mur ligase family, catalytic domain VAA_03715 PF02875 Mur ligase family, glutamate ligase domain VAA_03715 PF08245 Mur ligase middle domain VAA_03716 PF03033 Glycosyltransferase family 28 N-terminal domain VAA_03716 PF04101 Glycosyltransferase family 28 C-terminal domain VAA_03717 PF01098 VAA_03717 VAA_03718 PF02875 Mur ligase family, glutamate ligase domain VAA_03718 PF08245 Mur ligase middle domain VAA_03719 PF00953 Glycosyl transferase family 4 VAA_03719 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VAA_03720 PF01225 Mur ligase family, catalytic domain VAA_03720 PF02875 Mur ligase family, glutamate ligase domain VAA_03720 PF08245 Mur ligase middle domain VAA_03721 PF01225 Mur ligase family, catalytic domain VAA_03721 PF02875 Mur ligase family, glutamate ligase domain VAA_03721 PF08245 Mur ligase middle domain VAA_03722 PF00905 Penicillin binding protein transpeptidase domain VAA_03722 PF03717 Penicillin-binding Protein dimerisation domain VAA_03723 PF04999 VAA_03723 VAA_03724 PF01795 MraW methylase family VAA_03726 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA_03728 PF04348 LppC putative lipoprotein VAA_03729 PF02021 Uncharacterised protein family UPF0102 VAA_03730 PF13580 SIS domain VAA_03731 PF04972 BON domain VAA_03732 PF04386 Stringent starvation protein B VAA_03733 PF00043 Glutathione S-transferase, C-terminal domain VAA_03733 PF13417 Glutathione S-transferase, N-terminal domain VAA_03734 PF02167 Cytochrome C1 family VAA_03735 PF00032 Cytochrome b(C-terminal)/b6/petD VAA_03735 PF00033 Cytochrome b(N-terminal)/b6/petB VAA_03736 PF00355 Rieske [2Fe-2S] domain VAA_03736 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VAA_03737 PF00380 Ribosomal protein S9/S16 VAA_03738 PF00572 Ribosomal protein L13 VAA_03739 PF03969 AFG1-like ATPase VAA_03740 PF06295 VAA_03740 VAA_03741 PF00595 PDZ domain (Also known as DHR or GLGF) VAA_03741 PF13180 PDZ domain VAA_03741 PF13365 Trypsin-like peptidase domain VAA_03742 PF13180 PDZ domain VAA_03742 PF13365 Trypsin-like peptidase domain VAA_03743 PF00521 DNA gyrase/topoisomerase IV, subunit A VAA_03743 PF03989 DNA gyrase C-terminal domain, beta-propeller VAA_03744 PF00204 DNA gyrase B VAA_03744 PF00986 DNA gyrase B subunit, carboxyl terminus VAA_03744 PF01751 Toprim domain VAA_03744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_03745 PF05728 Uncharacterised protein family (UPF0227) VAA_03746 PF00149 Calcineurin-like phosphoesterase VAA_03747 PF06853 VAA_03747 VAA_03748 PF00293 NUDIX domain VAA_03750 PF02321 Outer membrane efflux protein VAA_03751 PF00294 pfkB family carbohydrate kinase VAA_03751 PF01467 Cytidylyltransferase VAA_03752 PF08335 GlnD PII-uridylyltransferase VAA_03753 PF03710 Glutamate-ammonia ligase adenylyltransferase VAA_03753 PF08335 GlnD PII-uridylyltransferase VAA_03754 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_03756 PF01928 CYTH domain VAA_03756 PF05235 CHAD domain VAA_03758 PF01865 Protein of unknown function DUF47 VAA_03759 PF01384 VAA_03759 VAA_03760 PF08239 Bacterial SH3 domain VAA_03761 PF16537 VAA_03761 VAA_03762 PF01471 Putative peptidoglycan binding domain VAA_03762 PF03412 Peptidase C39 family VAA_03762 PF13401 AAA domain VAA_03763 PF01743 Poly A polymerase head domain VAA_03763 PF01966 HD domain VAA_03763 PF12627 Probable RNA and SrmB- binding site of polymerase A VAA_03764 PF00113 Enolase, C-terminal TIM barrel domain VAA_03764 PF03952 Enolase, N-terminal domain VAA_03765 PF00117 Glutamine amidotransferase class-I VAA_03765 PF06418 CTP synthase N-terminus VAA_03766 PF03819 MazG nucleotide pyrophosphohydrolase domain VAA_03767 PF02824 TGS domain VAA_03767 PF04607 Region found in RelA / SpoT proteins VAA_03767 PF13291 ACT domain VAA_03767 PF13328 HD domain VAA_03768 PF01938 TRAM domain VAA_03768 PF05958 tRNA (Uracil-5-)-methyltransferase VAA_03770 PF00512 His Kinase A (phospho-acceptor) domain VAA_03770 PF09984 VAA_03770 VAA_03771 PF01648 4'-phosphopantetheinyl transferase superfamily VAA_03772 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VAA_03773 PF02565 Recombination protein O C terminal VAA_03773 PF11967 Recombination protein O N terminal VAA_03774 PF01926 50S ribosome-binding GTPase VAA_03774 PF07650 KH domain VAA_03775 PF00035 Double-stranded RNA binding motif VAA_03775 PF14622 Ribonuclease-III-like VAA_03776 PF00717 Peptidase S24-like VAA_03776 PF10502 Signal peptidase, peptidase S26 VAA_03777 PF00009 Elongation factor Tu GTP binding domain VAA_03777 PF00679 Elongation factor G C-terminus VAA_03777 PF03144 Elongation factor Tu domain 2 VAA_03777 PF06421 GTP-binding protein LepA C-terminus VAA_03778 PF04246 VAA_03778 VAA_03779 PF03888 MucB/RseB family VAA_03779 PF17188 VAA_03779 VAA_03780 PF03872 Anti sigma-E protein RseA, N-terminal domain VAA_03780 PF03873 Anti sigma-E protein RseA, C-terminal domain VAA_03781 PF04542 Sigma-70 region 2 VAA_03781 PF08281 Sigma-70, region 4 VAA_03782 PF00890 FAD binding domain VAA_03782 PF02910 Fumarate reductase flavoprotein C-term VAA_03784 PF03937 Flavinator of succinate dehydrogenase VAA_03785 PF01571 Aminomethyltransferase folate-binding domain VAA_03787 PF06526 Protein of unknown function (DUF1107) VAA_03788 PF01494 FAD binding domain VAA_03789 PF01494 FAD binding domain VAA_03790 PF03695 Uncharacterised protein family (UPF0149) VAA_03791 PF05164 Cell division protein ZapA VAA_03792 PF01812 5-formyltetrahydrofolate cyclo-ligase family VAA_03793 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VAA_03794 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA_03794 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA_03795 PF10369 Small subunit of acetolactate synthase VAA_03795 PF13710 ACT domain VAA_03796 PF00205 Thiamine pyrophosphate enzyme, central domain VAA_03796 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA_03796 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA_03797 PF00501 AMP-binding enzyme VAA_03798 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_03798 PF03466 LysR substrate binding domain VAA_03799 PF13528 Glycosyl transferase family 1 VAA_03800 PF01569 PAP2 superfamily VAA_03801 PF00682 HMGL-like VAA_03801 PF08502 LeuA allosteric (dimerisation) domain VAA_03802 PF00180 Isocitrate/isopropylmalate dehydrogenase VAA_03803 PF00330 Aconitase family (aconitate hydratase) VAA_03804 PF00694 Aconitase C-terminal domain VAA_03805 PF04784 VAA_03805 VAA_03857 PF00925 GTP cyclohydrolase II VAA_03857 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VAA_03867 PF11665 VAA_03867 VAA_03870 PF11665 VAA_03870 VAA_03877 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VAA_03885 PF05045 VAA_03885 VAA_03891 PF03050 VAA_03891 VAA_03891 PF13005 VAA_03891 VAA_03891 PF13007 VAA_03891 VAA_03891 PF13817 VAA_03891 VAA_03903 PF13737 VAA_03903 VAA_03904 PF04986 VAA_03904 VAA_03904 PF14319 VAA_03904 VAA_03906 PF13737 VAA_03906 VAA_03908 PF03480 Bacterial extracellular solute-binding protein, family 7 VAA_03912 PF04986 VAA_03912 VAA_03912 PF14319 VAA_03912 VAA_03914 PF04519 VAA_03914 VAA_03919 PF03050 VAA_03919 VAA_03919 PF13005 VAA_03919 VAA_03919 PF13007 VAA_03919 VAA_03919 PF13817 VAA_03919 VAA_03922 PF06923 VAA_03922 VAA_03931 PF04986 VAA_03931 VAA_03931 PF14319 VAA_03931 VAA_03934 PF04986 VAA_03934 VAA_03934 PF14319 VAA_03934 VAA_03936 PF04986 VAA_03936 VAA_03936 PF14319 VAA_03936 VAA_03938 PF00665 Integrase core domain VAA_03938 PF13276 VAA_03938 VAA_03941 PF00665 Integrase core domain VAA_03941 PF13276 VAA_03941 VAA_03942 PF01527 Transposase VAA_03946 PF03050 VAA_03946 VAA_03946 PF13005 VAA_03946 VAA_03946 PF13007 VAA_03946 VAA_03946 PF13817 VAA_03946 VAA_03947 PF05717 VAA_03947 VAA_03949 PF03050 VAA_03949 VAA_03949 PF13005 VAA_03949 VAA_03949 PF13007 VAA_03949 VAA_03949 PF13817 VAA_03949 VAA_03955 PF13007 VAA_03955 VAA_03956 PF13737 VAA_03956 VAA_03962 PF05717 VAA_03962 VAA_03964 PF13737 VAA_03964 VAA_03967 PF03050 VAA_03967 VAA_03967 PF13005 VAA_03967 VAA_03967 PF13007 VAA_03967 VAA_03967 PF13817 VAA_03967 VAA_03969 PF13737 VAA_03969 VAA_03971 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_03971 PF02874 ATP synthase alpha/beta family, beta-barrel domain VAA_03982 PF00456 Transketolase, thiamine diphosphate binding domain VAA_03982 PF02779 Transketolase, pyrimidine binding domain VAA_03982 PF02780 Transketolase, C-terminal domain VAA_03991 PF13737 VAA_03991 VAA_03996 PF11665 VAA_03996 VAA_04002 PF13737 VAA_04002 VAA_04013 PF04986 VAA_04013 VAA_04013 PF14319 VAA_04013 VAA_04030 PF01527 Transposase VAA_04033 PF13005 VAA_04033 VAA_04033 PF13007 VAA_04033 VAA_04042 PF04986 VAA_04042 VAA_04042 PF14319 VAA_04042 VAA_04051 PF03050 VAA_04051 VAA_04051 PF13005 VAA_04051 VAA_04051 PF13007 VAA_04051 VAA_04051 PF13817 VAA_04051 VAA_04058 PF13737 VAA_04058 VAA_04059 PF13737 VAA_04059 VAA_04060 PF03050 VAA_04060 VAA_04060 PF13005 VAA_04060 VAA_04060 PF13007 VAA_04060 VAA_04060 PF13817 VAA_04060 VAA_04065 PF03050 VAA_04065 VAA_04065 PF13005 VAA_04065 VAA_04065 PF13007 VAA_04065 VAA_04065 PF13817 VAA_04065 VAA_04068 PF07411 Domain of unknown function (DUF1508) VAA_04070 PF05717 VAA_04070 VAA_04071 PF03050 VAA_04071 VAA_04071 PF13005 VAA_04071 VAA_04071 PF13007 VAA_04071 VAA_04071 PF13817 VAA_04071 VAA_04075 PF02631 RecX family VAA_04076 PF11665 VAA_04076 VAA_04078 PF13817 VAA_04078 VAA_04081 PF13737 VAA_04081 VAA_04083 PF09016 Pas factor saposin fold VAA_04084 PF06945 VAA_04084 VAA_04087 PF13936 Helix-turn-helix domain VAA_04177 PF05717 VAA_04177 VAA_04193 PF05717 VAA_04193 VAA_04209 PF05717 VAA_04209 VAA_04210 PF05717 VAA_04210 VAA_04230 PF05717 VAA_04230 VAA_04231 PF05717 VAA_04231 VAA_04232 PF05717 VAA_04232 VAA_04239 PF13424 Tetratricopeptide repeat VAA_04240 PF13737 VAA_04240 VAA_04256 PF05717 VAA_04256 VAA_04257 PF03050 VAA_04257 VAA_04257 PF13005 VAA_04257 VAA_04257 PF13007 VAA_04257 VAA_04257 PF13817 VAA_04257 VAA_04259 PF05717 VAA_04259 VAA_04277 PF00009 Elongation factor Tu GTP binding domain VAA_04277 PF03143 Elongation factor Tu C-terminal domain VAA_04277 PF03144 Elongation factor Tu domain 2 VAA_04281 PF05717 VAA_04281 VAA_04283 PF05717 VAA_04283 VAA_04285 PF03701 VAA_04285 VAA_04286 PF13729 VAA_04286 VAA_04287 PF11060 VAA_04287 VAA_04288 PF00072 Response regulator receiver domain VAA_04288 PF00486 Transcriptional regulatory protein, C terminal VAA_04289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA_04289 PF11884 Domain of unknown function (DUF3404) VAA_04290 PF02233 NAD(P) transhydrogenase beta subunit VAA_04291 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VAA_04291 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VAA_04291 PF12769 Domain of unknown function (DUF3814) VAA_04292 PF10115 VAA_04292 VAA_04293 PF10719 VAA_04293 VAA_04294 PF00990 GGDEF domain VAA_04295 PF00313 'Cold-shock' DNA-binding domain VAA_04296 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_04296 PF12729 VAA_04296 VAA_04297 PF06934 VAA_04297 VAA_04299 PF13275 S4 domain VAA_04300 PF00043 Glutathione S-transferase, C-terminal domain VAA_04300 PF02798 Glutathione S-transferase, N-terminal domain VAA_04301 PF00043 Glutathione S-transferase, C-terminal domain VAA_04301 PF13417 Glutathione S-transferase, N-terminal domain VAA_04302 PF00440 Bacterial regulatory proteins, tetR family VAA_04303 PF03479 Domain of unknown function (DUF296) VAA_04304 PF00005 ABC transporter VAA_04304 PF12848 ABC transporter VAA_04305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA_04305 PF12793 VAA_04305 VAA_04306 PF11869 VAA_04306 VAA_04307 PF03061 Thioesterase superfamily VAA_04308 PF11667 VAA_04308 VAA_04309 PF03831 PhnA protein VAA_04309 PF08274 PhnA Zinc-Ribbon VAA_04312 PF00356 Bacterial regulatory proteins, lacI family VAA_04312 PF13377 Periplasmic binding protein-like domain VAA_04313 PF00294 pfkB family carbohydrate kinase VAA_04314 PF13407 Periplasmic binding protein domain VAA_04315 PF02653 VAA_04315 VAA_04316 PF00005 ABC transporter VAA_04317 PF05025 RbsD / FucU transport protein family VAA_04319 PF05717 VAA_04319 VAA_04320 PF03050 VAA_04320 VAA_04320 PF13005 VAA_04320 VAA_04320 PF13007 VAA_04320 VAA_04320 PF13817 VAA_04320 VAA_04324 PF13005 VAA_04324 VAA_04454 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA_0493 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA_0493 PF03466 LysR substrate binding domain VAA_0520 PF02082 Transcriptional regulator VAA_0986 PF03741 VAA_0986 VAA_1236 PF10000 ACT domain VAA_1236 PF13840 ACT domain VAA_1440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA_1440 PF12729 VAA_1440 VAA_1481 PF01925 VAA_1481 VAA_1482 PF00171 Aldehyde dehydrogenase family VAA_1488 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VAA_1806 PF14743 DNA ligase OB-like domain VAA_1814 PF03942 VAA_1814 VAA_1843 PF13386 VAA_1843 VAA_1856 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA_1856 PF13654 AAA domain VAA_1858 PF04957 Ribosome modulation factor VAA_3064 PF12698 ABC-2 family transporter protein VAA_3129 PF04191 Phospholipid methyltransferase VAA_3150 PF02445 Quinolinate synthetase A protein VAA_3171 PF02810 SEC-C motif VAA_3196 PF07055 Enoyl reductase FAD binding domain VAA_3196 PF12241 Trans-2-enoyl-CoA reductase catalytic region VAA_3196 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VAA_3320 PF13023 HD domain