VAA_00002 SM00421 helix_turn_helix, Lux Regulon VAA_00002 SM00448 cheY-homologous receiver domain VAA_00051 SM00155 Phospholipase D. Active site motifs. VAA_00069 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_00082 SM00387 Histidine kinase-like ATPases VAA_00082 SM00388 His Kinase A (phosphoacceptor) domain VAA_00082 SM00448 cheY-homologous receiver domain VAA_00093 SM00360 RNA recognition motif VAA_00097 SM00470 ParB-like nuclease domain VAA_00115 SM00257 Lysin motif VAA_00115 SM00646 VAA_00115 VAA_00116 SM00853 MutL C terminal dimerisation domain VAA_00116 SM01340 VAA_00116 VAA_00120 SM00244 prohibitin homologues VAA_00121 SM00244 prohibitin homologues VAA_00124 SM00320 WD40 repeats VAA_00132 SM00838 Elongation factor G C-terminus VAA_00132 SM00889 Elongation factor G, domain IV VAA_00134 SM00487 DEAD-like helicases superfamily VAA_00134 SM00490 helicase superfamily c-terminal domain VAA_00139 SM00530 Helix-turn-helix XRE-family like proteins VAA_00156 SM00382 ATPases associated with a variety of cellular activities VAA_00173 SM00635 Bacterial Ig-like domain 2 VAA_00176 SM00420 helix_turn_helix, Deoxyribose operon repressor VAA_00176 SM01134 VAA_00176 VAA_00179 SM00267 diguanylate cyclase VAA_00186 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_00198 SM00487 DEAD-like helicases superfamily VAA_00209 SM00876 Biotin and Thiamin Synthesis associated domain VAA_00262 SM00382 ATPases associated with a variety of cellular activities VAA_00263 SM01005 Alanine racemase, C-terminal domain VAA_00278 SM00382 ATPases associated with a variety of cellular activities VAA_00283 SM00530 Helix-turn-helix XRE-family like proteins VAA_00288 SM00857 Resolvase, N terminal domain VAA_00294 SM00563 Phosphate acyltransferases VAA_00302 SM00886 Stress responsive A/B Barrel Domain VAA_00308 SM00482 DNA polymerase A domain VAA_00317 SM00479 VAA_00317 VAA_00320 SM00530 Helix-turn-helix XRE-family like proteins VAA_00331 SM00881 CoA binding domain VAA_00334 SM00479 VAA_00334 VAA_00340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_00340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_00350 SM00663 RNA polymerase I subunit A N-terminus VAA_00355 SM00649 Ribosomal protein L11/L12 VAA_00356 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VAA_00356 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VAA_00370 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VAA_00372 SM00927 DNA mismatch repair enzyme MutH VAA_00376 SM00382 ATPases associated with a variety of cellular activities VAA_00378 SM00937 VAA_00378 VAA_00381 SM00487 DEAD-like helicases superfamily VAA_00381 SM00490 helicase superfamily c-terminal domain VAA_00383 SM00052 Putative diguanylate phosphodiesterase VAA_00383 SM00267 diguanylate cyclase VAA_00396 SM00530 Helix-turn-helix XRE-family like proteins VAA_00407 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VAA_00410 SM00904 Riboflavin kinase VAA_00422 SM00448 cheY-homologous receiver domain VAA_00425 SM00830 Chorismate mutase type II VAA_00427 SM00382 ATPases associated with a variety of cellular activities VAA_00431 SM00052 Putative diguanylate phosphodiesterase VAA_00431 SM00267 diguanylate cyclase VAA_00433 SM00830 Chorismate mutase type II VAA_00438 SM00363 S4 RNA-binding domain VAA_00440 SM00382 ATPases associated with a variety of cellular activities VAA_00440 SM01086 C-terminal, D2-small domain, of ClpB protein VAA_00448 SM00382 ATPases associated with a variety of cellular activities VAA_00448 SM00962 SRP54-type protein, GTPase domain VAA_00448 SM00963 SRP54-type protein, helical bundle domain VAA_00449 SM00382 ATPases associated with a variety of cellular activities VAA_00453 SM00450 Rhodanese Homology Domain VAA_00458 SM00563 Phosphate acyltransferases VAA_00466 SM01038 Beta galactosidase small chain VAA_00474 SM00857 Resolvase, N terminal domain VAA_00483 SM00530 Helix-turn-helix XRE-family like proteins VAA_00498 SM00495 Chitin-binding domain type 3 VAA_00501 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_00501 SM01240 VAA_00501 VAA_00504 SM00382 ATPases associated with a variety of cellular activities VAA_00505 SM00564 beta-propeller repeat VAA_00511 SM00562 VAA_00511 VAA_00516 SM00271 DnaJ molecular chaperone homology domain VAA_00525 SM01323 VAA_00525 VAA_00528 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_00536 SM00382 ATPases associated with a variety of cellular activities VAA_00542 SM00091 PAS domain VAA_00542 SM00387 Histidine kinase-like ATPases VAA_00542 SM00388 His Kinase A (phosphoacceptor) domain VAA_00543 SM00448 cheY-homologous receiver domain VAA_00543 SM00862 Transcriptional regulatory protein, C terminal VAA_00549 SM00344 helix_turn_helix ASNC type VAA_00560 SM00382 ATPases associated with a variety of cellular activities VAA_00564 SM01007 Class II Aldolase and Adducin N-terminal domain VAA_00567 SM00342 helix_turn_helix, arabinose operon control protein VAA_00577 SM01004 Delta-aminolevulinic acid dehydratase VAA_00578 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VAA_00578 SM00474 3'-5' exonuclease VAA_00578 SM00475 5'-3' exonuclease VAA_00578 SM00482 DNA polymerase A domain VAA_00584 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA_00594 SM00382 ATPases associated with a variety of cellular activities VAA_00601 SM00448 cheY-homologous receiver domain VAA_00604 SM00530 Helix-turn-helix XRE-family like proteins VAA_00606 SM00487 DEAD-like helicases superfamily VAA_00613 SM00357 Cold shock protein domain VAA_00613 SM00382 ATPases associated with a variety of cellular activities VAA_00613 SM00959 Rho termination factor, N-terminal domain VAA_00615 SM00487 DEAD-like helicases superfamily VAA_00615 SM00490 helicase superfamily c-terminal domain VAA_00618 SM00072 Guanylate kinase homologues. VAA_00619 SM01409 VAA_00619 VAA_00620 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_00620 SM00954 Region found in RelA / SpoT proteins VAA_00621 SM00487 DEAD-like helicases superfamily VAA_00621 SM00490 helicase superfamily c-terminal domain VAA_00623 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_00623 SM00387 Histidine kinase-like ATPases VAA_00623 SM00388 His Kinase A (phosphoacceptor) domain VAA_00624 SM00448 cheY-homologous receiver domain VAA_00624 SM00862 Transcriptional regulatory protein, C terminal VAA_00625 SM00495 Chitin-binding domain type 3 VAA_00635 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_00635 SM00732 Likely ribonuclease with RNase H fold. VAA_00652 SM00382 ATPases associated with a variety of cellular activities VAA_00655 SM00363 S4 RNA-binding domain VAA_00663 SM01230 VAA_00663 VAA_00666 SM00091 PAS domain VAA_00666 SM00387 Histidine kinase-like ATPases VAA_00666 SM00388 His Kinase A (phosphoacceptor) domain VAA_00669 SM00052 Putative diguanylate phosphodiesterase VAA_00669 SM00267 diguanylate cyclase VAA_00669 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_0067 SM00382 ATPases associated with a variety of cellular activities VAA_0067 SM00448 cheY-homologous receiver domain VAA_00676 SM00530 Helix-turn-helix XRE-family like proteins VAA_00678 SM00400 zinc finger VAA_00678 SM00493 VAA_00678 VAA_00678 SM00766 DNA primase DnaG DnaB-binding VAA_00685 SM01207 VAA_00685 VAA_00686 SM00905 Dihydroneopterin aldolase VAA_00695 SM00257 Lysin motif VAA_00697 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VAA_00697 SM00534 ATPase domain of DNA mismatch repair MUTS family VAA_00702 SM00382 ATPases associated with a variety of cellular activities VAA_00704 SM00382 ATPases associated with a variety of cellular activities VAA_00706 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VAA_00712 SM00829 Enoylreductase VAA_00720 SM00382 ATPases associated with a variety of cellular activities VAA_00720 SM00962 SRP54-type protein, GTPase domain VAA_00720 SM00963 SRP54-type protein, helical bundle domain VAA_00734 SM00644 VAA_00734 VAA_00739 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA_00739 SM00895 VAA_00739 VAA_00745 SM00947 Carbonic anhydrase VAA_00747 SM00382 ATPases associated with a variety of cellular activities VAA_00758 SM00487 DEAD-like helicases superfamily VAA_00758 SM00490 helicase superfamily c-terminal domain VAA_00758 SM00847 Helicase associated domain (HA2) Add an annotation VAA_00766 SM00938 Nitrogen regulatory protein P-II VAA_00770 SM00382 ATPases associated with a variety of cellular activities VAA_00772 SM01068 Putative carbohydrate binding domain VAA_00776 SM00382 ATPases associated with a variety of cellular activities VAA_00777 SM00382 ATPases associated with a variety of cellular activities VAA_00782 SM00091 PAS domain VAA_00782 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_00782 SM00387 Histidine kinase-like ATPases VAA_00782 SM00388 His Kinase A (phosphoacceptor) domain VAA_00782 SM00448 cheY-homologous receiver domain VAA_00796 SM01103 VAA_00796 VAA_00798 SM00382 ATPases associated with a variety of cellular activities VAA_00803 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_00803 SM00322 K homology RNA-binding domain VAA_00807 SM01387 VAA_00807 VAA_00808 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_00808 SM00322 K homology RNA-binding domain VAA_00809 SM00028 Tetratricopeptide repeats VAA_00810 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA_00814 SM00052 Putative diguanylate phosphodiesterase VAA_00814 SM00091 PAS domain VAA_00814 SM00267 diguanylate cyclase VAA_00833 SM00470 ParB-like nuclease domain VAA_00836 SM01228 VAA_00836 VAA_00840 SM01234 VAA_00840 VAA_00843 SM00382 ATPases associated with a variety of cellular activities VAA_00845 SM00062 Bacterial periplasmic substrate-binding proteins VAA_00846 SM00382 ATPases associated with a variety of cellular activities VAA_00846 SM00760 Bacterial dnaA protein helix-turn-helix domain VAA_00847 SM00480 DNA polymerase III beta subunit VAA_00849 SM00387 Histidine kinase-like ATPases VAA_00849 SM00433 TopoisomeraseII VAA_00887 SM00052 Putative diguanylate phosphodiesterase VAA_00887 SM00267 diguanylate cyclase VAA_00888 SM01057 Eukaryotic-type carbonic anhydrase VAA_00890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_00890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_00894 SM00028 Tetratricopeptide repeats VAA_00895 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_00895 SM00382 ATPases associated with a variety of cellular activities VAA_00898 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA_00901 SM00924 MgtE intracellular N domain VAA_00916 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_00916 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_00917 SM00642 Alpha-amylase domain VAA_00920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_00920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_00924 SM00327 von Willebrand factor (vWF) type A domain VAA_00925 SM00028 Tetratricopeptide repeats VAA_00928 SM00267 diguanylate cyclase VAA_00930 SM00507 HNH nucleases VAA_00935 SM00829 Enoylreductase VAA_00941 SM00421 helix_turn_helix, Lux Regulon VAA_00941 SM00448 cheY-homologous receiver domain VAA_00945 SM00481 DNA polymerase alpha chain like domain VAA_00946 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_00950 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_00951 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VAA_00953 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VAA_00957 SM00387 Histidine kinase-like ATPases VAA_00957 SM00388 His Kinase A (phosphoacceptor) domain VAA_00957 SM00448 cheY-homologous receiver domain VAA_00958 SM01240 VAA_00958 VAA_00961 SM00448 cheY-homologous receiver domain VAA_00964 SM00357 Cold shock protein domain VAA_00965 SM01322 VAA_00965 VAA_00967 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VAA_00967 SM00382 ATPases associated with a variety of cellular activities VAA_00976 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_00984 SM00422 helix_turn_helix, mercury resistance VAA_00985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_00985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01000 SM00530 Helix-turn-helix XRE-family like proteins VAA_01002 SM00020 Trypsin-like serine protease VAA_01008 SM00354 helix_turn _helix lactose operon repressor VAA_01011 SM00387 Histidine kinase-like ATPases VAA_01011 SM00448 cheY-homologous receiver domain VAA_01016 SM00382 ATPases associated with a variety of cellular activities VAA_01032 SM00420 helix_turn_helix, Deoxyribose operon repressor VAA_01032 SM01134 VAA_01032 VAA_01054 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VAA_01058 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01058 SM00387 Histidine kinase-like ATPases VAA_01059 SM00421 helix_turn_helix, Lux Regulon VAA_01059 SM00448 cheY-homologous receiver domain VAA_01066 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_01066 SM00357 Cold shock protein domain VAA_01066 SM00955 VAA_01066 VAA_01067 SM00487 DEAD-like helicases superfamily VAA_01067 SM00490 helicase superfamily c-terminal domain VAA_01068 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VAA_01079 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VAA_01079 SM00292 breast cancer carboxy-terminal domain VAA_01079 SM00532 Ligase N family VAA_01080 SM00771 ZipA, C-terminal domain (FtsZ-binding) VAA_01087 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA_01090 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_01090 SM01091 Transporter associated domain VAA_01101 SM00936 Penicillin-binding protein 5, C-terminal domain VAA_01104 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA_01127 SM00984 UDP binding domain VAA_01128 SM00984 UDP binding domain VAA_01132 SM00226 Low molecular weight phosphatase family VAA_01138 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01138 SM00387 Histidine kinase-like ATPases VAA_01138 SM00388 His Kinase A (phosphoacceptor) domain VAA_01139 SM00448 cheY-homologous receiver domain VAA_01139 SM00862 Transcriptional regulatory protein, C terminal VAA_01141 SM00642 Alpha-amylase domain VAA_01143 SM00354 helix_turn _helix lactose operon repressor VAA_01146 SM00382 ATPases associated with a variety of cellular activities VAA_01146 SM00930 VAA_01146 VAA_01154 SM00267 diguanylate cyclase VAA_01156 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VAA_01156 SM00475 5'-3' exonuclease VAA_01160 SM00981 VAA_01160 VAA_01166 SM00861 Transketolase, pyrimidine binding domain VAA_01182 SM01211 VAA_01182 VAA_01183 SM00062 Bacterial periplasmic substrate-binding proteins VAA_01187 SM00829 Enoylreductase VAA_01196 SM00271 DnaJ molecular chaperone homology domain VAA_01211 SM00382 ATPases associated with a variety of cellular activities VAA_01213 SM00487 DEAD-like helicases superfamily VAA_01226 SM00257 Lysin motif VAA_01238 SM00487 DEAD-like helicases superfamily VAA_01241 SM00342 helix_turn_helix, arabinose operon control protein VAA_01243 SM00091 PAS domain VAA_01243 SM00267 diguanylate cyclase VAA_01244 SM00420 helix_turn_helix, Deoxyribose operon repressor VAA_01244 SM01134 VAA_01244 VAA_01245 SM00421 helix_turn_helix, Lux Regulon VAA_01252 SM00382 ATPases associated with a variety of cellular activities VAA_01253 SM00421 helix_turn_helix, Lux Regulon VAA_01256 SM00260 Two component signalling adaptor domain VAA_01256 SM00448 cheY-homologous receiver domain VAA_01260 SM00530 Helix-turn-helix XRE-family like proteins VAA_01261 SM00267 diguanylate cyclase VAA_01261 SM01079 VAA_01261 VAA_01265 SM00267 diguanylate cyclase VAA_01268 SM00062 Bacterial periplasmic substrate-binding proteins VAA_01272 SM00382 ATPases associated with a variety of cellular activities VAA_01274 SM00062 Bacterial periplasmic substrate-binding proteins VAA_01274 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VAA_012815 SM00487 DEAD-like helicases superfamily VAA_012815 SM00490 helicase superfamily c-terminal domain VAA_01290 SM00052 Putative diguanylate phosphodiesterase VAA_01290 SM00267 diguanylate cyclase VAA_01296 SM00267 diguanylate cyclase VAA_01297 SM00382 ATPases associated with a variety of cellular activities VAA_01302 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA_01305 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VAA_01311 SM00495 Chitin-binding domain type 3 VAA_01317 SM00822 VAA_01317 VAA_01319 SM00382 ATPases associated with a variety of cellular activities VAA_01324 SM00342 helix_turn_helix, arabinose operon control protein VAA_01333 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01336 SM00354 helix_turn _helix lactose operon repressor VAA_01338 SM00382 ATPases associated with a variety of cellular activities VAA_01342 SM00354 helix_turn _helix lactose operon repressor VAA_01347 SM00849 Metallo-beta-lactamase superfamily VAA_01349 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01349 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01354 SM01350 VAA_01354 VAA_01358 SM00849 Metallo-beta-lactamase superfamily VAA_01373 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01373 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01375 SM00052 Putative diguanylate phosphodiesterase VAA_01378 SM00354 helix_turn _helix lactose operon repressor VAA_01379 SM00640 Glycosyl hydrolases family 32 VAA_01380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01381 SM00062 Bacterial periplasmic substrate-binding proteins VAA_01382 SM00450 Rhodanese Homology Domain VAA_01383 SM00382 ATPases associated with a variety of cellular activities VAA_01401 SM00849 Metallo-beta-lactamase superfamily VAA_01404 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA_01406 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01406 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01407 SM00479 VAA_01407 VAA_01408 SM00100 Cyclic nucleotide-monophosphate binding domain VAA_01408 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_01410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_01411 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01412 SM00448 cheY-homologous receiver domain VAA_01414 SM00073 Histidine Phosphotransfer domain VAA_01414 SM00260 Two component signalling adaptor domain VAA_01414 SM00387 Histidine kinase-like ATPases VAA_01414 SM01231 VAA_01414 VAA_01415 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01416 SM00260 Two component signalling adaptor domain VAA_01417 SM00138 Methyltransferase, chemotaxis proteins VAA_01419 SM00448 cheY-homologous receiver domain VAA_01422 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01422 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01434 SM00091 PAS domain VAA_01434 SM00382 ATPases associated with a variety of cellular activities VAA_01437 SM00267 diguanylate cyclase VAA_01439 SM01005 Alanine racemase, C-terminal domain VAA_01442 SM00387 Histidine kinase-like ATPases VAA_01443 SM00448 cheY-homologous receiver domain VAA_01445 SM00357 Cold shock protein domain VAA_01450 SM00487 DEAD-like helicases superfamily VAA_01450 SM00490 helicase superfamily c-terminal domain VAA_01452 SM00354 helix_turn _helix lactose operon repressor VAA_01461 SM00267 diguanylate cyclase VAA_01461 SM01079 VAA_01461 VAA_01462 SM00479 VAA_01462 VAA_01465 SM00382 ATPases associated with a variety of cellular activities VAA_01465 SM00487 DEAD-like helicases superfamily VAA_01465 SM00490 helicase superfamily c-terminal domain VAA_01465 SM00847 Helicase associated domain (HA2) Add an annotation VAA_01473 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_01474 SM00479 VAA_01474 VAA_01489 SM00857 Resolvase, N terminal domain VAA_01497 SM00271 DnaJ molecular chaperone homology domain VAA_01499 SM00052 Putative diguanylate phosphodiesterase VAA_01499 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VAA_01499 SM00267 diguanylate cyclase VAA_01503 SM00382 ATPases associated with a variety of cellular activities VAA_01506 SM00797 Allophanate hydrolase subunit 2 VAA_01507 SM00796 Allophanate hydrolase subunit 1 VAA_01510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01512 SM00487 DEAD-like helicases superfamily VAA_01512 SM00490 helicase superfamily c-terminal domain VAA_01516 SM00382 ATPases associated with a variety of cellular activities VAA_01517 SM00327 von Willebrand factor (vWF) type A domain VAA_01518 SM00382 ATPases associated with a variety of cellular activities VAA_01548 SM00387 Histidine kinase-like ATPases VAA_01548 SM00388 His Kinase A (phosphoacceptor) domain VAA_01548 SM00448 cheY-homologous receiver domain VAA_01557 SM00851 MGS-like domain VAA_01560 SM00387 Histidine kinase-like ATPases VAA_01560 SM00388 His Kinase A (phosphoacceptor) domain VAA_01560 SM00448 cheY-homologous receiver domain VAA_01565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01565 SM00387 Histidine kinase-like ATPases VAA_01565 SM00388 His Kinase A (phosphoacceptor) domain VAA_01566 SM00448 cheY-homologous receiver domain VAA_01568 SM00342 helix_turn_helix, arabinose operon control protein VAA_01569 SM00495 Chitin-binding domain type 3 VAA_01569 SM00636 VAA_01569 VAA_01571 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VAA_01571 SM00267 diguanylate cyclase VAA_01577 SM00382 ATPases associated with a variety of cellular activities VAA_01579 SM00267 diguanylate cyclase VAA_01579 SM00448 cheY-homologous receiver domain VAA_01581 SM00448 cheY-homologous receiver domain VAA_01582 SM00448 cheY-homologous receiver domain VAA_01584 SM00387 Histidine kinase-like ATPases VAA_01585 SM00387 Histidine kinase-like ATPases VAA_01585 SM00388 His Kinase A (phosphoacceptor) domain VAA_01586 SM00052 Putative diguanylate phosphodiesterase VAA_01586 SM00267 diguanylate cyclase VAA_01586 SM00448 cheY-homologous receiver domain VAA_01587 SM00448 cheY-homologous receiver domain VAA_01589 SM00450 Rhodanese Homology Domain VAA_01591 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VAA_01596 SM00062 Bacterial periplasmic substrate-binding proteins VAA_01596 SM00267 diguanylate cyclase VAA_01606 SM00382 ATPases associated with a variety of cellular activities VAA_01607 SM00052 Putative diguanylate phosphodiesterase VAA_01611 SM00867 YceI-like domain VAA_01612 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01618 SM00861 Transketolase, pyrimidine binding domain VAA_01623 SM00636 VAA_01623 VAA_01624 SM00450 Rhodanese Homology Domain VAA_01626 SM00852 Probable molybdopterin binding domain VAA_01636 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA_01636 SM00866 VAA_01636 VAA_01640 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_01649 SM00731 SprT homologues. VAA_01654 SM00732 Likely ribonuclease with RNase H fold. VAA_01660 SM01152 VAA_01660 VAA_01663 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA_01666 SM00478 endonuclease III VAA_01666 SM00525 VAA_01666 VAA_01674 SM00650 Ribosomal RNA adenine dimethylases VAA_01698 SM00530 Helix-turn-helix XRE-family like proteins VAA_01701 SM00487 DEAD-like helicases superfamily VAA_01715 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_01721 SM00560 LamG-like jellyroll fold domain VAA_01730 SM00382 ATPases associated with a variety of cellular activities VAA_01731 SM00028 Tetratricopeptide repeats VAA_01733 SM00965 Secretin and TonB N terminus short domain VAA_01738 SM00052 Putative diguanylate phosphodiesterase VAA_01738 SM00267 diguanylate cyclase VAA_01740 SM00421 helix_turn_helix, Lux Regulon VAA_01744 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_01744 SM00924 MgtE intracellular N domain VAA_01748 SM01018 B12 binding domain VAA_01761 SM01001 AIR carboxylase VAA_01768 SM00257 Lysin motif VAA_01783 SM00487 DEAD-like helicases superfamily VAA_01783 SM00491 VAA_01783 VAA_01798 SM00849 Metallo-beta-lactamase superfamily VAA_01812 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01820 SM00382 ATPases associated with a variety of cellular activities VAA_01825 SM00387 Histidine kinase-like ATPases VAA_01826 SM00421 helix_turn_helix, Lux Regulon VAA_01826 SM00448 cheY-homologous receiver domain VAA_01828 SM00382 ATPases associated with a variety of cellular activities VAA_01835 SM00382 ATPases associated with a variety of cellular activities VAA_01841 SM00100 Cyclic nucleotide-monophosphate binding domain VAA_01841 SM00419 helix_turn_helix, cAMP Regulatory protein VAA_01860 SM00382 ATPases associated with a variety of cellular activities VAA_01862 SM00981 VAA_01862 VAA_01871 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VAA_01871 SM00245 tail specific protease VAA_01872 SM00945 ProQ/FINO family VAA_01874 SM00382 ATPases associated with a variety of cellular activities VAA_01879 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_01885 SM00028 Tetratricopeptide repeats VAA_01888 SM00062 Bacterial periplasmic substrate-binding proteins VAA_01891 SM00382 ATPases associated with a variety of cellular activities VAA_01895 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VAA_01901 SM00448 cheY-homologous receiver domain VAA_01902 SM00073 Histidine Phosphotransfer domain VAA_01902 SM00260 Two component signalling adaptor domain VAA_01902 SM00387 Histidine kinase-like ATPases VAA_01902 SM01231 VAA_01902 VAA_01903 SM00260 Two component signalling adaptor domain VAA_01904 SM00260 Two component signalling adaptor domain VAA_01905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01906 SM00138 Methyltransferase, chemotaxis proteins VAA_01908 SM00448 cheY-homologous receiver domain VAA_01909 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01912 SM00448 cheY-homologous receiver domain VAA_01914 SM00382 ATPases associated with a variety of cellular activities VAA_01915 SM00052 Putative diguanylate phosphodiesterase VAA_01915 SM00267 diguanylate cyclase VAA_01919 SM00421 helix_turn_helix, Lux Regulon VAA_01922 SM00342 helix_turn_helix, arabinose operon control protein VAA_01927 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01927 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01928 SM00344 helix_turn_helix ASNC type VAA_01934 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01936 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01936 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01936 SM01049 VAA_01936 VAA_01938 SM00421 helix_turn_helix, Lux Regulon VAA_01941 SM00642 Alpha-amylase domain VAA_01953 SM01219 VAA_01953 VAA_01960 SM01144 VAA_01960 VAA_01965 SM00052 Putative diguanylate phosphodiesterase VAA_01975 SM00434 DNA Topoisomerase IV VAA_01982 SM00852 Probable molybdopterin binding domain VAA_01987 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_01987 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_01987 SM01049 VAA_01987 VAA_01994 SM00382 ATPases associated with a variety of cellular activities VAA_01999 SM00363 S4 RNA-binding domain VAA_02000 SM00487 DEAD-like helicases superfamily VAA_02000 SM00490 helicase superfamily c-terminal domain VAA_02002 SM00448 cheY-homologous receiver domain VAA_02002 SM00862 Transcriptional regulatory protein, C terminal VAA_02003 SM00387 Histidine kinase-like ATPases VAA_02007 SM00487 DEAD-like helicases superfamily VAA_02007 SM00490 helicase superfamily c-terminal domain VAA_02011 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_02016 SM00764 Citrate lyase ligase C-terminal domain VAA_02022 SM00387 Histidine kinase-like ATPases VAA_02023 SM00448 cheY-homologous receiver domain VAA_02035 SM00342 helix_turn_helix, arabinose operon control protein VAA_02043 SM00382 ATPases associated with a variety of cellular activities VAA_02048 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_02048 SM00387 Histidine kinase-like ATPases VAA_02048 SM00388 His Kinase A (phosphoacceptor) domain VAA_02049 SM00448 cheY-homologous receiver domain VAA_02049 SM00862 Transcriptional regulatory protein, C terminal VAA_02056 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA_02056 SM00895 VAA_02056 VAA_02077 SM00923 MbtH-like protein VAA_02085 SM00900 VAA_02085 VAA_02087 SM00478 endonuclease III VAA_02087 SM00525 VAA_02087 VAA_02090 SM00479 VAA_02090 VAA_02106 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VAA_02110 SM00387 Histidine kinase-like ATPases VAA_02111 SM00862 Transcriptional regulatory protein, C terminal VAA_02118 SM00244 prohibitin homologues VAA_02120 SM00422 helix_turn_helix, mercury resistance VAA_02127 SM00155 Phospholipase D. Active site motifs. VAA_02133 SM00382 ATPases associated with a variety of cellular activities VAA_02138 SM00382 ATPases associated with a variety of cellular activities VAA_02139 SM00382 ATPases associated with a variety of cellular activities VAA_02142 SM01131 VAA_02142 VAA_02169 SM00448 cheY-homologous receiver domain VAA_02169 SM00862 Transcriptional regulatory protein, C terminal VAA_02171 SM00354 helix_turn _helix lactose operon repressor VAA_02178 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VAA_02178 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VAA_02178 SM00493 VAA_02178 VAA_02185 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_02186 SM00382 ATPases associated with a variety of cellular activities VAA_02186 SM01086 C-terminal, D2-small domain, of ClpB protein VAA_02189 SM00357 Cold shock protein domain VAA_02203 SM00528 Domain in histone-like proteins of HNS family VAA_02211 SM00387 Histidine kinase-like ATPases VAA_02212 SM00448 cheY-homologous receiver domain VAA_02226 SM00919 Malic enzyme, NAD binding domain VAA_02226 SM01274 VAA_02226 VAA_02231 SM00267 diguanylate cyclase VAA_02233 SM00382 ATPases associated with a variety of cellular activities VAA_02234 SM00382 ATPases associated with a variety of cellular activities VAA_02241 SM00052 Putative diguanylate phosphodiesterase VAA_02241 SM00267 diguanylate cyclase VAA_02242 SM00363 S4 RNA-binding domain VAA_02265 SM00052 Putative diguanylate phosphodiesterase VAA_02265 SM00091 PAS domain VAA_02267 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA_02278 SM00843 VAA_02278 VAA_02280 SM00344 helix_turn_helix ASNC type VAA_02281 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VAA_02281 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VAA_02285 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA_02286 SM00028 Tetratricopeptide repeats VAA_02288 SM00411 bacterial (prokaryotic) histone like domain VAA_02289 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_02294 SM00411 bacterial (prokaryotic) histone like domain VAA_02295 SM00382 ATPases associated with a variety of cellular activities VAA_02295 SM00464 Found in ATP-dependent protease La (LON) VAA_02296 SM00382 ATPases associated with a variety of cellular activities VAA_02296 SM00994 ClpX C4-type zinc finger VAA_02296 SM01086 C-terminal, D2-small domain, of ClpB protein VAA_02300 SM00387 Histidine kinase-like ATPases VAA_02300 SM00388 His Kinase A (phosphoacceptor) domain VAA_02301 SM00382 ATPases associated with a variety of cellular activities VAA_02301 SM00448 cheY-homologous receiver domain VAA_02306 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_02306 SM00387 Histidine kinase-like ATPases VAA_02307 SM00448 cheY-homologous receiver domain VAA_02307 SM00862 Transcriptional regulatory protein, C terminal VAA_02311 SM00487 DEAD-like helicases superfamily VAA_02311 SM00490 helicase superfamily c-terminal domain VAA_02312 SM00642 Alpha-amylase domain VAA_02321 SM00495 Chitin-binding domain type 3 VAA_02321 SM00636 VAA_02321 VAA_02329 SM00474 3'-5' exonuclease VAA_02335 SM00487 DEAD-like helicases superfamily VAA_02335 SM00491 VAA_02335 VAA_02340 SM00870 VAA_02340 VAA_02344 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_02351 SM00493 VAA_02351 VAA_02353 SM00382 ATPases associated with a variety of cellular activities VAA_02357 SM00448 cheY-homologous receiver domain VAA_02376 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_02377 SM00267 diguanylate cyclase VAA_02381 SM00852 Probable molybdopterin binding domain VAA_02382 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA_02385 SM00448 cheY-homologous receiver domain VAA_02386 SM00487 DEAD-like helicases superfamily VAA_02386 SM00490 helicase superfamily c-terminal domain VAA_02398 SM00823 Phosphopantetheine attachment site VAA_02398 SM00824 Thioesterase VAA_02414 SM00342 helix_turn_helix, arabinose operon control protein VAA_02416 SM00341 Helicase and RNase D C-terminal VAA_02416 SM00487 DEAD-like helicases superfamily VAA_02416 SM00490 helicase superfamily c-terminal domain VAA_02416 SM00956 VAA_02416 VAA_02422 SM00382 ATPases associated with a variety of cellular activities VAA_02424 SM00382 ATPases associated with a variety of cellular activities VAA_02431 SM00636 VAA_02431 VAA_02439 SM00530 Helix-turn-helix XRE-family like proteins VAA_02445 SM00530 Helix-turn-helix XRE-family like proteins VAA_02459 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VAA_02459 SM01232 VAA_02459 VAA_02481 SM00382 ATPases associated with a variety of cellular activities VAA_02513 SM00226 Low molecular weight phosphatase family VAA_02522 SM00984 UDP binding domain VAA_02524 SM00849 Metallo-beta-lactamase superfamily VAA_02524 SM01027 Beta-Casp domain VAA_02525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_02525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_02532 SM00411 bacterial (prokaryotic) histone like domain VAA_02534 SM01209 VAA_02534 VAA_02534 SM01210 VAA_02534 VAA_02535 SM00798 AICARFT/IMPCHase bienzyme VAA_02535 SM00851 MGS-like domain VAA_02537 SM00422 helix_turn_helix, mercury resistance VAA_02538 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_02544 SM00878 Biotin carboxylase C-terminal domain VAA_02548 SM00479 VAA_02548 VAA_02551 SM00387 Histidine kinase-like ATPases VAA_02551 SM00388 His Kinase A (phosphoacceptor) domain VAA_02551 SM00448 cheY-homologous receiver domain VAA_02554 SM01091 Transporter associated domain VAA_02555 SM00421 helix_turn_helix, Lux Regulon VAA_02555 SM00448 cheY-homologous receiver domain VAA_02570 SM00357 Cold shock protein domain VAA_02572 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_02572 SM00387 Histidine kinase-like ATPases VAA_02572 SM00388 His Kinase A (phosphoacceptor) domain VAA_02573 SM00448 cheY-homologous receiver domain VAA_02573 SM00862 Transcriptional regulatory protein, C terminal VAA_02584 SM00919 Malic enzyme, NAD binding domain VAA_02584 SM01274 VAA_02584 VAA_02586 SM00487 DEAD-like helicases superfamily VAA_02586 SM00490 helicase superfamily c-terminal domain VAA_02587 SM00354 helix_turn _helix lactose operon repressor VAA_02590 SM00382 ATPases associated with a variety of cellular activities VAA_02590 SM01086 C-terminal, D2-small domain, of ClpB protein VAA_02600 SM00883 Chaperonin 10 Kd subunit VAA_02605 SM00841 Elongation factor P, C-terminal VAA_02605 SM01185 VAA_02605 VAA_02611 SM00450 Rhodanese Homology Domain VAA_02614 SM00971 Serine acetyltransferase, N-terminal VAA_02618 SM00859 Semialdehyde dehydrogenase, NAD binding domain VAA_02632 SM00965 Secretin and TonB N terminus short domain VAA_02650 SM01150 VAA_02650 VAA_02651 SM00100 Cyclic nucleotide-monophosphate binding domain VAA_02651 SM00419 helix_turn_helix, cAMP Regulatory protein VAA_02656 SM00382 ATPases associated with a variety of cellular activities VAA_02663 SM00788 Adenylosuccinate synthetase VAA_02665 SM00671 Sel1-like repeats. VAA_02666 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_02666 SM00357 Cold shock protein domain VAA_02666 SM00955 VAA_02666 VAA_02669 SM01403 VAA_02669 VAA_02673 SM01382 VAA_02673 VAA_02673 SM01383 VAA_02673 VAA_02676 SM00322 K homology RNA-binding domain VAA_02680 SM01374 VAA_02680 VAA_02681 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VAA_02694 SM00363 S4 RNA-binding domain VAA_02694 SM01390 VAA_02694 VAA_02695 SM00662 RNA polymerases D VAA_02700 SM00487 DEAD-like helicases superfamily VAA_02700 SM00490 helicase superfamily c-terminal domain VAA_02701 SM00563 Phosphate acyltransferases VAA_02717 SM00382 ATPases associated with a variety of cellular activities VAA_02731 SM00382 ATPases associated with a variety of cellular activities VAA_02734 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_02734 SM00924 MgtE intracellular N domain VAA_02740 SM00382 ATPases associated with a variety of cellular activities VAA_02744 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA_02748 SM00382 ATPases associated with a variety of cellular activities VAA_02755 SM00563 Phosphate acyltransferases VAA_02756 SM00387 Histidine kinase-like ATPases VAA_02757 SM00989 VAA_02757 VAA_02764 SM00670 Large family of predicted nucleotide-binding domains VAA_02765 SM00487 DEAD-like helicases superfamily VAA_02765 SM00490 helicase superfamily c-terminal domain VAA_02781 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_02783 SM00342 helix_turn_helix, arabinose operon control protein VAA_02783 SM01009 AlkA N-terminal domain VAA_02800 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA_02802 SM00052 Putative diguanylate phosphodiesterase VAA_02804 SM00450 Rhodanese Homology Domain VAA_02806 SM00382 ATPases associated with a variety of cellular activities VAA_02809 SM00382 ATPases associated with a variety of cellular activities VAA_02814 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA_02814 SM00866 VAA_02814 VAA_02822 SM00829 Enoylreductase VAA_02826 SM00448 cheY-homologous receiver domain VAA_02826 SM00862 Transcriptional regulatory protein, C terminal VAA_02827 SM00387 Histidine kinase-like ATPases VAA_02843 SM00382 ATPases associated with a variety of cellular activities VAA_02843 SM01086 C-terminal, D2-small domain, of ClpB protein VAA_02844 SM00382 ATPases associated with a variety of cellular activities VAA_02862 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VAA_02862 SM00495 Chitin-binding domain type 3 VAA_02862 SM00636 VAA_02862 VAA_02863 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA_02864 SM00382 ATPases associated with a variety of cellular activities VAA_02866 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_02866 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_02869 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_02869 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_02872 SM00014 Acid phosphatase homologues VAA_02874 SM00382 ATPases associated with a variety of cellular activities VAA_02878 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VAA_02878 SM00267 diguanylate cyclase VAA_02882 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA_02884 SM01007 Class II Aldolase and Adducin N-terminal domain VAA_02888 SM00420 helix_turn_helix, Deoxyribose operon repressor VAA_02888 SM01134 VAA_02888 VAA_02890 SM00642 Alpha-amylase domain VAA_02896 SM00642 Alpha-amylase domain VAA_02897 SM00671 Sel1-like repeats. VAA_02910 SM00267 diguanylate cyclase VAA_02911 SM00028 Tetratricopeptide repeats VAA_02915 SM00422 helix_turn_helix, mercury resistance VAA_02917 SM00257 Lysin motif VAA_02919 SM00487 DEAD-like helicases superfamily VAA_02919 SM00490 helicase superfamily c-terminal domain VAA_02937 SM00642 Alpha-amylase domain VAA_02942 SM00382 ATPases associated with a variety of cellular activities VAA_02947 SM00448 cheY-homologous receiver domain VAA_02947 SM00850 LytTr DNA-binding domain VAA_02948 SM00052 Putative diguanylate phosphodiesterase VAA_02952 SM00448 cheY-homologous receiver domain VAA_02952 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_02953 SM00073 Histidine Phosphotransfer domain VAA_02953 SM00091 PAS domain VAA_02953 SM00387 Histidine kinase-like ATPases VAA_02953 SM00388 His Kinase A (phosphoacceptor) domain VAA_02953 SM00448 cheY-homologous receiver domain VAA_02954 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_02954 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_02960 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA_02961 SM00387 Histidine kinase-like ATPases VAA_02961 SM00388 His Kinase A (phosphoacceptor) domain VAA_02961 SM00448 cheY-homologous receiver domain VAA_02970 SM01266 VAA_02970 VAA_02980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_02980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_02982 SM00342 helix_turn_helix, arabinose operon control protein VAA_02984 SM00448 cheY-homologous receiver domain VAA_02985 SM00387 Histidine kinase-like ATPases VAA_02990 SM00344 helix_turn_helix ASNC type VAA_02992 SM00458 Ricin-type beta-trefoil VAA_02995 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VAA_03003 SM00382 ATPases associated with a variety of cellular activities VAA_03006 SM00421 helix_turn_helix, Lux Regulon VAA_03007 SM00382 ATPases associated with a variety of cellular activities VAA_03013 SM00342 helix_turn_helix, arabinose operon control protein VAA_03015 SM00862 Transcriptional regulatory protein, C terminal VAA_03017 SM00862 Transcriptional regulatory protein, C terminal VAA_03021 SM00220 Serine/Threonine protein kinases, catalytic domain VAA_03026 SM00240 Forkhead associated domain VAA_03031 SM00382 ATPases associated with a variety of cellular activities VAA_03031 SM01086 C-terminal, D2-small domain, of ClpB protein VAA_03050 SM00530 Helix-turn-helix XRE-family like proteins VAA_03051 SM00267 diguanylate cyclase VAA_03053 SM00642 Alpha-amylase domain VAA_03054 SM00260 Two component signalling adaptor domain VAA_03054 SM00448 cheY-homologous receiver domain VAA_03055 SM00062 Bacterial periplasmic substrate-binding proteins VAA_03056 SM00448 cheY-homologous receiver domain VAA_03057 SM00387 Histidine kinase-like ATPases VAA_03067 SM00028 Tetratricopeptide repeats VAA_03078 SM00382 ATPases associated with a variety of cellular activities VAA_03081 SM00855 Phosphoglycerate mutase family VAA_03089 SM00382 ATPases associated with a variety of cellular activities VAA_03091 SM00382 ATPases associated with a variety of cellular activities VAA_03092 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_03092 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_03096 SM00479 VAA_03096 VAA_03100 SM00052 Putative diguanylate phosphodiesterase VAA_03100 SM00267 diguanylate cyclase VAA_03102 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VAA_03102 SM00091 PAS domain VAA_03102 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_03106 SM00411 bacterial (prokaryotic) histone like domain VAA_03107 SM00873 B3/4 domain VAA_03107 SM00874 tRNA synthetase B5 domain VAA_03107 SM00896 Ferredoxin-fold anticodon binding domain VAA_03115 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VAA_03115 SM00465 GIY-YIG type nucleases (URI domain) VAA_03116 SM00421 helix_turn_helix, Lux Regulon VAA_03116 SM00448 cheY-homologous receiver domain VAA_03117 SM00486 DNA polymerase type-B family VAA_03119 SM00841 Elongation factor P, C-terminal VAA_03119 SM01185 VAA_03119 VAA_03123 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA_03123 SM00866 VAA_03123 VAA_03133 SM00671 Sel1-like repeats. VAA_03142 SM00267 diguanylate cyclase VAA_03144 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_03151 SM00028 Tetratricopeptide repeats VAA_03163 SM00382 ATPases associated with a variety of cellular activities VAA_03164 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VAA_03166 SM00840 VAA_03166 VAA_03170 SM00052 Putative diguanylate phosphodiesterase VAA_03173 SM00491 VAA_03173 VAA_03177 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_03177 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_03181 SM00062 Bacterial periplasmic substrate-binding proteins VAA_03181 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VAA_03182 SM00382 ATPases associated with a variety of cellular activities VAA_03188 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_03188 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_03192 SM00763 PrkA AAA domain VAA_03200 SM00382 ATPases associated with a variety of cellular activities VAA_03201 SM00849 Metallo-beta-lactamase superfamily VAA_03204 SM00382 ATPases associated with a variety of cellular activities VAA_03207 SM00487 DEAD-like helicases superfamily VAA_03207 SM00490 helicase superfamily c-terminal domain VAA_03207 SM00982 VAA_03207 VAA_03207 SM01058 CarD-like/TRCF domain VAA_0321 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA_03219 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_03219 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_03228 SM00382 ATPases associated with a variety of cellular activities VAA_03230 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA_03230 SM00876 Biotin and Thiamin Synthesis associated domain VAA_03233 SM00382 ATPases associated with a variety of cellular activities VAA_03245 SM00382 ATPases associated with a variety of cellular activities VAA_03246 SM00382 ATPases associated with a variety of cellular activities VAA_03252 SM00052 Putative diguanylate phosphodiesterase VAA_03252 SM00421 helix_turn_helix, Lux Regulon VAA_03252 SM00448 cheY-homologous receiver domain VAA_03253 SM00062 Bacterial periplasmic substrate-binding proteins VAA_03253 SM00387 Histidine kinase-like ATPases VAA_03253 SM00388 His Kinase A (phosphoacceptor) domain VAA_03253 SM00448 cheY-homologous receiver domain VAA_03258 SM00563 Phosphate acyltransferases VAA_03270 SM00825 Beta-ketoacyl synthase VAA_03272 SM00822 VAA_03272 VAA_03273 SM00825 Beta-ketoacyl synthase VAA_03281 SM00354 helix_turn _helix lactose operon repressor VAA_03285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_03285 SM00387 Histidine kinase-like ATPases VAA_03285 SM00388 His Kinase A (phosphoacceptor) domain VAA_03286 SM00448 cheY-homologous receiver domain VAA_03286 SM00862 Transcriptional regulatory protein, C terminal VAA_03290 SM00344 helix_turn_helix ASNC type VAA_03292 SM00387 Histidine kinase-like ATPases VAA_03292 SM00388 His Kinase A (phosphoacceptor) domain VAA_03293 SM00448 cheY-homologous receiver domain VAA_03293 SM00862 Transcriptional regulatory protein, C terminal VAA_03296 SM01236 VAA_03296 VAA_03301 SM00062 Bacterial periplasmic substrate-binding proteins VAA_03301 SM00267 diguanylate cyclase VAA_03306 SM00344 helix_turn_helix ASNC type VAA_03308 SM00978 VAA_03308 VAA_03310 SM00563 Phosphate acyltransferases VAA_03314 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VAA_03321 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_03322 SM01144 VAA_03322 VAA_03326 SM00260 Two component signalling adaptor domain VAA_03326 SM00448 cheY-homologous receiver domain VAA_03341 SM00825 Beta-ketoacyl synthase VAA_03343 SM00822 VAA_03343 VAA_03344 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VAA_03350 SM00363 S4 RNA-binding domain VAA_03351 SM00316 Ribosomal protein S1-like RNA-binding domain VAA_03356 SM00859 Semialdehyde dehydrogenase, NAD binding domain VAA_03366 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VAA_03366 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VAA_03366 SM00493 VAA_03366 VAA_03380 SM00382 ATPases associated with a variety of cellular activities VAA_03382 SM00260 Two component signalling adaptor domain VAA_03383 SM00260 Two component signalling adaptor domain VAA_03385 SM00448 cheY-homologous receiver domain VAA_03386 SM00073 Histidine Phosphotransfer domain VAA_03386 SM00260 Two component signalling adaptor domain VAA_03386 SM00387 Histidine kinase-like ATPases VAA_03386 SM01231 VAA_03386 VAA_03388 SM00448 cheY-homologous receiver domain VAA_03391 SM00382 ATPases associated with a variety of cellular activities VAA_03391 SM00962 SRP54-type protein, GTPase domain VAA_03393 SM00855 Phosphoglycerate mutase family VAA_03396 SM00836 DALR anticodon binding domain VAA_03396 SM01016 Arginyl tRNA synthetase N terminal dom VAA_03400 SM00899 VAA_03400 VAA_03402 SM00342 helix_turn_helix, arabinose operon control protein VAA_03405 SM00382 ATPases associated with a variety of cellular activities VAA_03407 SM00881 CoA binding domain VAA_03410 SM00861 Transketolase, pyrimidine binding domain VAA_03430 SM00859 Semialdehyde dehydrogenase, NAD binding domain VAA_03432 SM00825 Beta-ketoacyl synthase VAA_03442 SM00463 Small MutS-related domain VAA_03460 SM00382 ATPases associated with a variety of cellular activities VAA_03460 SM00448 cheY-homologous receiver domain VAA_03461 SM00091 PAS domain VAA_03461 SM00387 Histidine kinase-like ATPases VAA_03461 SM00388 His Kinase A (phosphoacceptor) domain VAA_03462 SM00382 ATPases associated with a variety of cellular activities VAA_03482 SM01130 VAA_03482 VAA_03486 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_03486 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_03502 SM00937 VAA_03502 VAA_03507 SM01400 VAA_03507 VAA_03514 SM00047 Lysozyme subfamily 2 VAA_03524 SM00138 Methyltransferase, chemotaxis proteins VAA_03525 SM00260 Two component signalling adaptor domain VAA_03525 SM00448 cheY-homologous receiver domain VAA_03526 SM00858 VAA_03526 VAA_03539 SM01081 Putative carbohydrate binding domain VAA_03541 SM00363 S4 RNA-binding domain VAA_03550 SM00479 VAA_03550 VAA_03553 SM00849 Metallo-beta-lactamase superfamily VAA_03554 SM00257 Lysin motif VAA_03557 SM00938 Nitrogen regulatory protein P-II VAA_03559 SM00977 TilS substrate C-terminal domain VAA_03562 SM00481 DNA polymerase alpha chain like domain VAA_03568 SM00935 Outer membrane protein (OmpH-like) VAA_03570 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VAA_03579 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA_03593 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VAA_03605 SM00267 diguanylate cyclase VAA_03614 SM00900 VAA_03614 VAA_03624 SM00464 Found in ATP-dependent protease La (LON) VAA_03631 SM00925 MltA specific insert domain VAA_03648 SM00354 helix_turn _helix lactose operon repressor VAA_03663 SM00382 ATPases associated with a variety of cellular activities VAA_03670 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VAA_03671 SM01133 VAA_03671 VAA_03679 SM00986 Uracil DNA glycosylase superfamily VAA_03679 SM00987 UreE urease accessory protein, C-terminal domain VAA_03680 SM00518 AP endonuclease family 2 VAA_03687 SM00448 cheY-homologous receiver domain VAA_03687 SM00862 Transcriptional regulatory protein, C terminal VAA_03689 SM00073 Histidine Phosphotransfer domain VAA_03689 SM00091 PAS domain VAA_03689 SM00387 Histidine kinase-like ATPases VAA_03689 SM00388 His Kinase A (phosphoacceptor) domain VAA_03689 SM00448 cheY-homologous receiver domain VAA_03690 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA_03703 SM00851 MGS-like domain VAA_03703 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VAA_03704 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VAA_03708 SM00957 SecA DEAD-like domain VAA_03708 SM00958 SecA preprotein cross-linking domain VAA_03711 SM00864 Tubulin/FtsZ family, GTPase domain VAA_03711 SM00865 Tubulin/FtsZ family, C-terminal domain VAA_03712 SM00842 Cell division protein FtsA VAA_03731 SM00749 bacterial OsmY and nodulation domain VAA_03741 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VAA_03742 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VAA_03743 SM00434 DNA Topoisomerase IV VAA_03744 SM00387 Histidine kinase-like ATPases VAA_03744 SM00433 TopoisomeraseII VAA_03754 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_03756 SM00880 VAA_03756 VAA_03756 SM01118 VAA_03756 VAA_03760 SM00287 Bacterial SH3 domain homologues VAA_03762 SM00382 ATPases associated with a variety of cellular activities VAA_03764 SM01192 VAA_03764 VAA_03764 SM01193 VAA_03764 VAA_03767 SM00954 Region found in RelA / SpoT proteins VAA_03770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_03770 SM00388 His Kinase A (phosphoacceptor) domain VAA_03775 SM00358 Double-stranded RNA binding motif VAA_03775 SM00535 Ribonuclease III family VAA_03800 SM00014 Acid phosphatase homologues VAA_03801 SM00917 LeuA allosteric (dimerisation) domain VAA_03802 SM01329 VAA_03802 VAA_03982 SM00861 Transketolase, pyrimidine binding domain VAA_04239 SM00028 Tetratricopeptide repeats VAA_04288 SM00448 cheY-homologous receiver domain VAA_04288 SM00862 Transcriptional regulatory protein, C terminal VAA_04289 SM00387 Histidine kinase-like ATPases VAA_04289 SM00388 His Kinase A (phosphoacceptor) domain VAA_04291 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VAA_04291 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VAA_04294 SM00267 diguanylate cyclase VAA_04295 SM00357 Cold shock protein domain VAA_04296 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_04296 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_04304 SM00382 ATPases associated with a variety of cellular activities VAA_04309 SM00782 PhnA Zinc-Ribbon VAA_04312 SM00354 helix_turn _helix lactose operon repressor VAA_04316 SM00382 ATPases associated with a variety of cellular activities VAA_04454 SM00382 ATPases associated with a variety of cellular activities VAA_1440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA_1440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA_1814 SM01144 VAA_1814 VAA_3320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif.