locus-tag class description CLI14_00005 PF13932 GidA associated domain CLI14_00005 PF01134 Glucose inhibited division protein A CLI14_00010 PF02527 rRNA small subunit methyltransferase G CLI14_00015 PF13614 AAA domain CLI14_00020 PF17762 HTH domain found in ParB protein CLI14_00020 PF02195 ParB-like nuclease domain CLI14_00025 PF03899 ATP synthase I chain CLI14_00030 PF00119 ATP synthase A chain CLI14_00035 PF00137 ATP synthase subunit C CLI14_00040 PF00430 ATP synthase B/B' CF(0) CLI14_00045 PF00213 ATP synthase delta (OSCP) subunit CLI14_00050 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI14_00050 PF00306 ATP synthase alpha/beta chain, C terminal domain CLI14_00050 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLI14_00055 PF00231 ATP synthase CLI14_00060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI14_00060 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLI14_00065 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CLI14_00065 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLI14_00070 PF14602 Hexapeptide repeat of succinyl-transferase CLI14_00070 PF12804 MobA-like NTP transferase domain CLI14_00070 PF00132 Bacterial transferase hexapeptide (six repeats) CLI14_00075 PF07690 Major Facilitator Superfamily CLI14_00080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_00080 PF03466 LysR substrate binding domain CLI14_00085 PF00108 Thiolase, N-terminal domain CLI14_00085 PF02803 Thiolase, C-terminal domain CLI14_00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLI14_00090 PF00378 Enoyl-CoA hydratase/isomerase CLI14_00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLI14_00095 PF01205 Uncharacterized protein family UPF0029 CLI14_00095 PF09186 Domain of unknown function (DUF1949) CLI14_00100 PF02386 Cation transport protein CLI14_00105 PF12724 Flavodoxin domain CLI14_00150 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CLI14_00155 PF01964 Radical SAM ThiC family CLI14_00155 PF13667 ThiC-associated domain CLI14_00160 PF02581 Thiamine monophosphate synthase CLI14_00165 PF00899 ThiF family CLI14_00170 PF02597 ThiS family CLI14_00175 PF05690 Thiazole biosynthesis protein ThiG CLI14_00180 PF04055 Radical SAM superfamily CLI14_00180 PF06968 Biotin and Thiamin Synthesis associated domain CLI14_00185 PF00557 Metallopeptidase family M24 CLI14_00185 PF00557 Metallopeptidase family M24 CLI14_00185 PF01321 Creatinase/Prolidase N-terminal domain CLI14_00185 PF01321 Creatinase/Prolidase N-terminal domain CLI14_00190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_00190 PF03466 LysR substrate binding domain CLI14_00195 PF07690 Major Facilitator Superfamily CLI14_00200 PF13737 Transposase DDE domain CLI14_00210 PF01037 Lrp/AsnC ligand binding domain CLI14_00215 PF04445 Putative SAM-dependent methyltransferase CLI14_00225 PF00892 EamA-like transporter family CLI14_00230 PF00582 Universal stress protein family CLI14_00235 PF00210 Ferritin-like domain CLI14_00240 PF10625 Universal stress protein B (UspB) CLI14_00255 PF06414 Zeta toxin CLI14_00260 PF02653 Branched-chain amino acid transport system / permease component CLI14_00265 PF00005 ABC transporter CLI14_00270 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CLI14_00275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLI14_00275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLI14_00280 PF00596 Class II Aldolase and Adducin N-terminal domain CLI14_00285 PF11762 L-arabinose isomerase C-terminal domain CLI14_00285 PF02610 L-arabinose isomerase CLI14_00295 PF12833 Helix-turn-helix domain CLI14_00295 PF02311 AraC-like ligand binding domain CLI14_00305 PF02646 RmuC family CLI14_00310 PF01209 ubiE/COQ5 methyltransferase family CLI14_00315 PF02036 SCP-2 sterol transfer family CLI14_00320 PF03109 ABC1 family CLI14_00325 PF02416 mttA/Hcf106 family CLI14_00330 PF02416 mttA/Hcf106 family CLI14_00335 PF00902 Sec-independent protein translocase protein (TatC) CLI14_00345 PF01026 TatD related DNase CLI14_00350 PF00490 Delta-aminolevulinic acid dehydratase CLI14_00355 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLI14_00355 PF01367 5'-3' exonuclease, C-terminal SAM fold CLI14_00355 PF00476 DNA polymerase family A CLI14_00355 PF01612 3'-5' exonuclease CLI14_00360 PF01926 50S ribosome-binding GTPase CLI14_00365 PF00034 Cytochrome c CLI14_00375 PF04220 Der GTPase activator (YihI) CLI14_00380 PF10675 Protein of unknown function (DUF2489) CLI14_00385 PF04055 Radical SAM superfamily CLI14_00385 PF06969 HemN C-terminal domain CLI14_00390 PF03466 LysR substrate binding domain CLI14_00390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_00395 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CLI14_00395 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CLI14_00400 PF04380 Membrane fusogenic activity CLI14_00405 PF00873 AcrB/AcrD/AcrF family CLI14_00410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLI14_00415 PF08359 YsiA-like protein, C-terminal region CLI14_00415 PF00440 Bacterial regulatory proteins, tetR family CLI14_00420 PF13361 UvrD-like helicase C-terminal domain CLI14_00420 PF00580 UvrD/REP helicase N-terminal domain CLI14_00425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLI14_00455 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI14_00455 PF00005 ABC transporter CLI14_00460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI14_00470 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_00470 PF12911 N-terminal TM domain of oligopeptide transport permease C CLI14_00485 PF00072 Response regulator receiver domain CLI14_00525 PF13007 Transposase C of IS166 homeodomain CLI14_00525 PF13005 zinc-finger binding domain of transposase IS66 CLI14_00525 PF13817 IS66 C-terminal element CLI14_00525 PF03050 Transposase IS66 family CLI14_00545 PF04245 37-kD nucleoid-associated bacterial protein CLI14_00565 PF13005 zinc-finger binding domain of transposase IS66 CLI14_00565 PF13007 Transposase C of IS166 homeodomain CLI14_00565 PF13817 IS66 C-terminal element CLI14_00565 PF03050 Transposase IS66 family CLI14_00575 PF07693 KAP family P-loop domain CLI14_00590 PF13737 Transposase DDE domain CLI14_00620 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_00620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLI14_00625 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CLI14_00630 PF01432 Peptidase family M3 CLI14_00635 PF13361 UvrD-like helicase C-terminal domain CLI14_00635 PF00580 UvrD/REP helicase N-terminal domain CLI14_00640 PF01810 LysE type translocator CLI14_00650 PF00892 EamA-like transporter family CLI14_00655 PF09382 RQC domain CLI14_00655 PF16124 RecQ zinc-binding CLI14_00655 PF00570 HRDC domain CLI14_00655 PF00271 Helicase conserved C-terminal domain CLI14_00655 PF00270 DEAD/DEAH box helicase CLI14_00670 PF01380 SIS domain CLI14_00670 PF01418 Helix-turn-helix domain, rpiR family CLI14_00675 PF01380 SIS domain CLI14_00680 PF02378 Phosphotransferase system, EIIC CLI14_00680 PF00367 phosphotransferase system, EIIB CLI14_00685 PF00005 ABC transporter CLI14_00685 PF00664 ABC transporter transmembrane region CLI14_00690 PF00593 TonB dependent receptor CLI14_00690 PF07715 TonB-dependent Receptor Plug Domain CLI14_00695 PF00005 ABC transporter CLI14_00700 PF01497 Periplasmic binding protein CLI14_00705 PF01032 FecCD transport family CLI14_00715 PF13737 Transposase DDE domain CLI14_00720 PF00675 Insulinase (Peptidase family M16) CLI14_00720 PF05193 Peptidase M16 inactive domain CLI14_00755 PF01555 DNA methylase CLI14_00795 PF01381 Helix-turn-helix CLI14_00810 PF03755 YicC-like family, N-terminal region CLI14_00810 PF08340 Domain of unknown function (DUF1732) CLI14_00815 PF01138 3' exoribonuclease family, domain 1 CLI14_00815 PF03725 3' exoribonuclease family, domain 2 CLI14_00825 PF03279 Bacterial lipid A biosynthesis acyltransferase CLI14_00830 PF03279 Bacterial lipid A biosynthesis acyltransferase CLI14_00835 PF00440 Bacterial regulatory proteins, tetR family CLI14_00840 PF04127 DNA / pantothenate metabolism flavoprotein CLI14_00840 PF02441 Flavoprotein CLI14_00845 PF04002 RadC-like JAB domain CLI14_00855 PF00471 Ribosomal protein L33 CLI14_00865 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CLI14_00865 PF06827 Zinc finger found in FPG and IleRS CLI14_00865 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CLI14_00870 PF01467 Cytidylyltransferase-like CLI14_00875 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CLI14_00880 PF00535 Glycosyl transferase family 2 CLI14_00885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CLI14_00905 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLI14_00910 PF00132 Bacterial transferase hexapeptide (six repeats) CLI14_00915 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CLI14_00920 PF04488 Glycosyltransferase sugar-binding region containing DXD motif CLI14_00930 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CLI14_00935 PF04932 O-Antigen ligase CLI14_00945 PF01370 NAD dependent epimerase/dehydratase family CLI14_00950 PF16363 GDP-mannose 4,6 dehydratase CLI14_00955 PF00483 Nucleotidyl transferase CLI14_00960 PF04321 RmlD substrate binding domain CLI14_00965 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLI14_00970 PF01061 ABC-2 type transporter CLI14_00975 PF00005 ABC transporter CLI14_00995 PF00970 Oxidoreductase FAD-binding domain CLI14_00995 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI14_00995 PF00175 Oxidoreductase NAD-binding domain CLI14_01000 PF00483 Nucleotidyl transferase CLI14_01005 PF16363 GDP-mannose 4,6 dehydratase CLI14_01010 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLI14_01025 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLI14_01035 PF00535 Glycosyl transferase family 2 CLI14_01045 PF05523 WxcM-like, C-terminal CLI14_01055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLI14_01060 PF00535 Glycosyl transferase family 2 CLI14_01065 PF05045 Rhamnan synthesis protein F CLI14_01070 PF00535 Glycosyl transferase family 2 CLI14_01080 PF02719 Polysaccharide biosynthesis protein CLI14_01085 PF01370 NAD dependent epimerase/dehydratase family CLI14_01090 PF02397 Bacterial sugar transferase CLI14_01100 PF06082 Exopolysaccharide biosynthesis protein YbjH CLI14_01110 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CLI14_01120 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CLI14_01120 PF10531 SLBB domain CLI14_01120 PF02563 Polysaccharide biosynthesis/export protein CLI14_01125 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLI14_01130 PF02706 Chain length determinant protein CLI14_01130 PF13807 G-rich domain on putative tyrosine kinase CLI14_01130 PF13614 AAA domain CLI14_01165 PF13439 Glycosyltransferase Family 4 CLI14_01165 PF00534 Glycosyl transferases group 1 CLI14_01170 PF01370 NAD dependent epimerase/dehydratase family CLI14_01175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLI14_01175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLI14_01175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLI14_01180 PF00953 Glycosyl transferase family 4 CLI14_01185 PF00753 Metallo-beta-lactamase superfamily CLI14_01185 PF10996 Beta-Casp domain CLI14_01185 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLI14_01190 PF02743 Cache domain CLI14_01190 PF00672 HAMP domain CLI14_01190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_01195 PF00924 Mechanosensitive ion channel CLI14_01200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI14_01205 PF04222 Protein of unknown function (DUF416) CLI14_01210 PF04480 Protein of unknown function (DUF559) CLI14_01215 PF00571 CBS domain CLI14_01215 PF01595 Cyclin M transmembrane N-terminal domain CLI14_01220 PF00216 Bacterial DNA-binding protein CLI14_01230 PF02844 Phosphoribosylglycinamide synthetase, N domain CLI14_01230 PF02843 Phosphoribosylglycinamide synthetase, C domain CLI14_01230 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLI14_01235 PF01808 AICARFT/IMPCHase bienzyme CLI14_01235 PF02142 MGS-like domain CLI14_01240 PF13411 MerR HTH family regulatory protein CLI14_01250 PF02954 Bacterial regulatory protein, Fis family CLI14_01255 PF01207 Dihydrouridine synthase (Dus) CLI14_01265 PF00289 Biotin carboxylase, N-terminal domain CLI14_01265 PF02785 Biotin carboxylase C-terminal domain CLI14_01265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLI14_01270 PF00364 Biotin-requiring enzyme CLI14_01275 PF01220 Dehydroquinase class II CLI14_01280 PF13193 AMP-binding enzyme C-terminal domain CLI14_01280 PF00501 AMP-binding enzyme CLI14_01280 PF16177 Acetyl-coenzyme A synthetase N-terminus CLI14_01295 PF12832 MFS_1 like family CLI14_01300 PF00672 HAMP domain CLI14_01300 PF00072 Response regulator receiver domain CLI14_01300 PF01627 Hpt domain CLI14_01300 PF00512 His Kinase A (phospho-acceptor) domain CLI14_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_01305 PF00474 Sodium:solute symporter family CLI14_01315 PF03471 Transporter associated domain CLI14_01315 PF02080 TrkA-C domain CLI14_01315 PF00999 Sodium/hydrogen exchanger family CLI14_01320 PF00072 Response regulator receiver domain CLI14_01320 PF00196 Bacterial regulatory proteins, luxR family CLI14_01325 PF02683 Cytochrome C biogenesis protein transmembrane region CLI14_01325 PF11412 Disulphide bond corrector protein DsbC CLI14_01330 PF02863 Arginine repressor, C-terminal domain CLI14_01330 PF01316 Arginine repressor, DNA binding domain CLI14_01335 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CLI14_01335 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CLI14_01340 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLI14_01340 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLI14_01350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLI14_01350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLI14_01355 PF00696 Amino acid kinase family CLI14_01365 PF03606 C4-dicarboxylate anaerobic carrier CLI14_01375 PF00206 Lyase CLI14_01375 PF10415 Fumarase C C-terminus CLI14_01380 PF04186 FxsA cytoplasmic membrane protein CLI14_01385 PF00313 'Cold-shock' DNA-binding domain CLI14_01390 PF00588 SpoU rRNA Methylase family CLI14_01395 PF00512 His Kinase A (phospho-acceptor) domain CLI14_01395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_01395 PF16527 Two-component sensor protein CpxA, periplasmic domain CLI14_01395 PF00672 HAMP domain CLI14_01400 PF00486 Transcriptional regulatory protein, C terminal CLI14_01400 PF00072 Response regulator receiver domain CLI14_01410 PF16916 Dimerisation domain of Zinc Transporter CLI14_01410 PF01545 Cation efflux family CLI14_01415 PF00365 Phosphofructokinase CLI14_01420 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CLI14_01430 PF02219 Methylenetetrahydrofolate reductase CLI14_01435 PF00742 Homoserine dehydrogenase CLI14_01435 PF00696 Amino acid kinase family CLI14_01435 PF03447 Homoserine dehydrogenase, NAD binding domain CLI14_01440 PF01053 Cys/Met metabolism PLP-dependent enzyme CLI14_01445 PF01340 Met Apo-repressor, MetJ CLI14_01450 PF03949 Malic enzyme, NAD binding domain CLI14_01450 PF00390 Malic enzyme, N-terminal domain CLI14_01455 PF01197 Ribosomal protein L31 CLI14_01460 PF00270 DEAD/DEAH box helicase CLI14_01460 PF18074 Primosomal protein N C-terminal domain CLI14_01460 PF00271 Helicase conserved C-terminal domain CLI14_01460 PF17764 3′ DNA-binding domain (3′BD) CLI14_01460 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CLI14_01465 PF00356 Bacterial regulatory proteins, lacI family CLI14_01475 PF00227 Proteasome subunit CLI14_01480 PF07724 AAA domain (Cdc48 subfamily) CLI14_01480 PF00004 ATPase family associated with various cellular activities (AAA) CLI14_01480 PF10431 C-terminal, D2-small domain, of ClpB protein CLI14_01485 PF01040 UbiA prenyltransferase family CLI14_01490 PF03737 Aldolase/RraA CLI14_01495 PF01554 MatE CLI14_01500 PF00121 Triosephosphate isomerase CLI14_01525 PF00166 Chaperonin 10 Kd subunit CLI14_01530 PF00118 TCP-1/cpn60 chaperonin family CLI14_01540 PF02308 MgtC family CLI14_01545 PF04055 Radical SAM superfamily CLI14_01550 PF08207 Elongation factor P (EF-P) KOW-like domain CLI14_01550 PF01132 Elongation factor P (EF-P) OB domain CLI14_01550 PF09285 Elongation factor P, C-terminal CLI14_01555 PF02313 Fumarate reductase subunit D CLI14_01560 PF02300 Fumarate reductase subunit C CLI14_01565 PF13183 4Fe-4S dicluster domain CLI14_01565 PF13085 2Fe-2S iron-sulfur cluster binding domain CLI14_01570 PF02910 Fumarate reductase flavoprotein C-term CLI14_01570 PF00890 FAD binding domain CLI14_01575 PF00152 tRNA synthetases class II (D, K and N) CLI14_01580 PF00581 Rhodanese-like domain CLI14_01585 PF02556 Preprotein translocase subunit SecB CLI14_01590 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLI14_01590 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLI14_01595 PF00132 Bacterial transferase hexapeptide (six repeats) CLI14_01595 PF06426 Serine acetyltransferase, N-terminal CLI14_01615 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLI14_01615 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLI14_01620 PF00696 Amino acid kinase family CLI14_01625 PF00764 Arginosuccinate synthase CLI14_01630 PF00206 Lyase CLI14_01630 PF00583 Acetyltransferase (GNAT) family CLI14_01630 PF14698 Argininosuccinate lyase C-terminal CLI14_01640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLI14_01640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_01645 PF08534 Redoxin CLI14_01645 PF00462 Glutaredoxin CLI14_01650 PF03466 LysR substrate binding domain CLI14_01650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_01655 PF17092 Penicillin-binding protein OB-like domain CLI14_01655 PF00905 Penicillin binding protein transpeptidase domain CLI14_01655 PF00912 Transglycosylase CLI14_01680 PF07660 Secretin and TonB N terminus short domain CLI14_01680 PF00263 Bacterial type II and III secretion system protein CLI14_01680 PF03958 Bacterial type II/III secretion system short domain CLI14_01680 PF11741 AMIN domain CLI14_01685 PF01202 Shikimate kinase CLI14_01700 PF02086 D12 class N6 adenine-specific DNA methyltransferase CLI14_01705 PF00834 Ribulose-phosphate 3 epimerase family CLI14_01710 PF13419 Haloacid dehalogenase-like hydrolase CLI14_01715 PF00579 tRNA synthetases class I (W and Y) CLI14_01730 PF03466 LysR substrate binding domain CLI14_01730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_01740 PF01494 FAD binding domain CLI14_01750 PF00117 Glutamine amidotransferase class-I CLI14_01755 PF00202 Aminotransferase class-III CLI14_01760 PF04958 Arginine N-succinyltransferase beta subunit CLI14_01775 PF00027 Cyclic nucleotide-binding domain CLI14_01775 PF13545 Crp-like helix-turn-helix domain CLI14_01780 PF00485 Phosphoribulokinase / Uridine kinase family CLI14_01785 PF06794 Uncharacterised protein family (UPF0270) CLI14_01790 PF00561 alpha/beta hydrolase fold CLI14_01800 PF12848 ABC transporter CLI14_01800 PF00005 ABC transporter CLI14_01805 PF02525 Flavodoxin-like fold CLI14_01810 PF00999 Sodium/hydrogen exchanger family CLI14_01810 PF02254 TrkA-N domain CLI14_01815 PF09526 Probable metal-binding protein (DUF2387) CLI14_01820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLI14_01825 PF01112 Asparaginase CLI14_01830 PF00709 Adenylosuccinate synthetase CLI14_01840 PF08238 Sel1 repeat CLI14_01845 PF00575 S1 RNA binding domain CLI14_01845 PF08461 Ribonuclease R winged-helix domain CLI14_01845 PF08206 Ribonuclease B OB domain CLI14_01845 PF00773 RNB domain CLI14_01845 PF17876 Cold shock domain CLI14_01850 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLI14_01850 PF00588 SpoU rRNA Methylase family CLI14_01855 PF00338 Ribosomal protein S10p/S20e CLI14_01870 PF00276 Ribosomal protein L23 CLI14_01875 PF03947 Ribosomal Proteins L2, C-terminal domain CLI14_01875 PF00181 Ribosomal Proteins L2, RNA binding domain CLI14_01880 PF00203 Ribosomal protein S19 CLI14_01885 PF00237 Ribosomal protein L22p/L17e CLI14_01890 PF00189 Ribosomal protein S3, C-terminal domain CLI14_01890 PF07650 KH domain CLI14_01895 PF00252 Ribosomal protein L16p/L10e CLI14_01900 PF00831 Ribosomal L29 protein CLI14_01905 PF00366 Ribosomal protein S17 CLI14_01910 PF00238 Ribosomal protein L14p/L23e CLI14_01920 PF00673 ribosomal L5P family C-terminus CLI14_01920 PF00281 Ribosomal protein L5 CLI14_01925 PF00253 Ribosomal protein S14p/S29e CLI14_01930 PF00410 Ribosomal protein S8 CLI14_01935 PF00347 Ribosomal protein L6 CLI14_01940 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CLI14_01950 PF00327 Ribosomal protein L30p/L7e CLI14_01955 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CLI14_01960 PF00344 SecY translocase CLI14_01965 PF00444 Ribosomal protein L36 CLI14_01970 PF00416 Ribosomal protein S13/S18 CLI14_01975 PF00411 Ribosomal protein S11 CLI14_01980 PF01479 S4 domain CLI14_01980 PF00163 Ribosomal protein S4/S9 N-terminal domain CLI14_01990 PF01196 Ribosomal protein L17 CLI14_01995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CLI14_01995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLI14_02000 PF04225 Opacity-associated protein A LysM-like domain CLI14_02000 PF08525 Opacity-associated protein A N-terminal motif CLI14_02005 PF13673 Acetyltransferase (GNAT) domain CLI14_02010 PF03880 DbpA RNA binding domain CLI14_02010 PF00270 DEAD/DEAH box helicase CLI14_02010 PF00271 Helicase conserved C-terminal domain CLI14_02050 PF02872 5'-nucleotidase, C-terminal domain CLI14_02050 PF00149 Calcineurin-like phosphoesterase CLI14_02055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI14_02055 PF14824 Sirohaem biosynthesis protein central CLI14_02055 PF10414 Sirohaem synthase dimerisation region CLI14_02060 PF01507 Phosphoadenosine phosphosulfate reductase family CLI14_02065 PF00009 Elongation factor Tu GTP binding domain CLI14_02090 PF00005 ABC transporter CLI14_02105 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CLI14_02110 PF01625 Peptide methionine sulfoxide reductase CLI14_02115 PF17243 POTRA domain TamA domain 1 CLI14_02115 PF01103 Surface antigen CLI14_02115 PF07244 Surface antigen variable number repeat CLI14_02120 PF04357 TamB, inner membrane protein subunit of TAM complex CLI14_02125 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CLI14_02135 PF00719 Inorganic pyrophosphatase CLI14_02140 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CLI14_02145 PF02875 Mur ligase family, glutamate ligase domain CLI14_02145 PF08245 Mur ligase middle domain CLI14_02145 PF01225 Mur ligase family, catalytic domain CLI14_02150 PF02441 Flavoprotein CLI14_02160 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_02165 PF00005 ABC transporter CLI14_02170 PF04751 Protein of unknown function (DUF615) CLI14_02175 PF01523 Putative modulator of DNA gyrase CLI14_02180 PF00571 CBS domain CLI14_02180 PF03448 MgtE intracellular N domain CLI14_02180 PF01769 Divalent cation transporter CLI14_02185 PF00381 PTS HPr component phosphorylation site CLI14_02190 PF03668 P-loop ATPase protein family CLI14_02195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI14_02200 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLI14_02205 PF04552 Sigma-54, DNA binding domain CLI14_02205 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLI14_02205 PF04963 Sigma-54 factor, core binding domain CLI14_02210 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLI14_02210 PF00005 ABC transporter CLI14_02215 PF03968 OstA-like protein CLI14_02230 PF01380 SIS domain CLI14_02230 PF00571 CBS domain CLI14_02235 PF01699 Sodium/calcium exchanger protein CLI14_02240 PF00005 ABC transporter CLI14_02245 PF02405 Permease MlaE CLI14_02250 PF02470 MlaD protein CLI14_02255 PF05494 MlaC protein CLI14_02265 PF01722 BolA-like protein CLI14_02270 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLI14_02275 PF01553 Acyltransferase CLI14_02280 PF13188 PAS domain CLI14_02280 PF08448 PAS fold CLI14_02280 PF00512 His Kinase A (phospho-acceptor) domain CLI14_02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_02280 PF00072 Response regulator receiver domain CLI14_02290 PF01042 Endoribonuclease L-PSP CLI14_02295 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CLI14_02295 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CLI14_02300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLI14_02300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLI14_02305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLI14_02305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLI14_02310 PF02562 PhoH-like protein CLI14_02310 PF13638 PIN domain CLI14_02320 PF18339 RapA N-terminal Tudor like domain 1 CLI14_02320 PF18337 RapA N-terminal Tudor like domain CLI14_02320 PF00176 SNF2 family N-terminal domain CLI14_02320 PF00271 Helicase conserved C-terminal domain CLI14_02320 PF12137 RNA polymerase recycling family C-terminal CLI14_02330 PF00849 RNA pseudouridylate synthase CLI14_02335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI14_02335 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLI14_02340 PF00133 tRNA synthetases class I (I, L, M and V) CLI14_02340 PF10458 Valyl tRNA synthetase tRNA binding arm CLI14_02340 PF08264 Anticodon-binding domain of tRNA CLI14_02345 PF04364 DNA polymerase III chi subunit, HolC CLI14_02350 PF00883 Cytosol aminopeptidase family, catalytic domain CLI14_02350 PF02789 Cytosol aminopeptidase family, N-terminal domain CLI14_02355 PF03739 Lipopolysaccharide export system permease LptF/LptG CLI14_02360 PF03739 Lipopolysaccharide export system permease LptF/LptG CLI14_02445 PF00694 Aconitase C-terminal domain CLI14_02450 PF00330 Aconitase family (aconitate hydratase) CLI14_02455 PF00180 Isocitrate/isopropylmalate dehydrogenase CLI14_02460 PF00682 HMGL-like CLI14_02460 PF08502 LeuA allosteric (dimerisation) domain CLI14_02465 PF01569 PAP2 superfamily CLI14_02475 PF03466 LysR substrate binding domain CLI14_02475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_02480 PF00501 AMP-binding enzyme CLI14_02485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLI14_02485 PF00205 Thiamine pyrophosphate enzyme, central domain CLI14_02485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLI14_02490 PF10369 Small subunit of acetolactate synthase CLI14_02495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLI14_02495 PF01842 ACT domain CLI14_02495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI14_02500 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CLI14_02505 PF01812 5-formyltetrahydrofolate cyclo-ligase family CLI14_02515 PF05164 Cell division protein ZapA CLI14_02525 PF01494 FAD binding domain CLI14_02530 PF01494 FAD binding domain CLI14_02550 PF03937 Flavinator of succinate dehydrogenase CLI14_02560 PF00890 FAD binding domain CLI14_02560 PF02910 Fumarate reductase flavoprotein C-term CLI14_02565 PF04542 Sigma-70 region 2 CLI14_02565 PF08281 Sigma-70, region 4 CLI14_02570 PF03873 Anti sigma-E protein RseA, C-terminal domain CLI14_02570 PF03872 Anti sigma-E protein RseA, N-terminal domain CLI14_02575 PF03888 MucB/RseB N-terminal domain CLI14_02575 PF17188 MucB/RseB C-terminal domain CLI14_02585 PF06421 GTP-binding protein LepA C-terminus CLI14_02585 PF00679 Elongation factor G C-terminus CLI14_02585 PF03144 Elongation factor Tu domain 2 CLI14_02585 PF00009 Elongation factor Tu GTP binding domain CLI14_02590 PF10502 Signal peptidase, peptidase S26 CLI14_02600 PF01926 50S ribosome-binding GTPase CLI14_02600 PF07650 KH domain CLI14_02610 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CLI14_02615 PF01648 4'-phosphopantetheinyl transferase superfamily CLI14_02620 PF00512 His Kinase A (phospho-acceptor) domain CLI14_02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_02620 PF00672 HAMP domain CLI14_02620 PF01627 Hpt domain CLI14_02620 PF00072 Response regulator receiver domain CLI14_02620 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLI14_02625 PF05958 tRNA (Uracil-5-)-methyltransferase CLI14_02625 PF01938 TRAM domain CLI14_02630 PF13291 ACT domain CLI14_02630 PF04607 Region found in RelA / SpoT proteins CLI14_02630 PF02824 TGS domain CLI14_02635 PF03819 MazG nucleotide pyrophosphohydrolase domain CLI14_02640 PF06418 CTP synthase N-terminus CLI14_02640 PF00117 Glutamine amidotransferase class-I CLI14_02645 PF00113 Enolase, C-terminal TIM barrel domain CLI14_02645 PF03952 Enolase, N-terminal domain CLI14_02650 PF01966 HD domain CLI14_02650 PF01743 Poly A polymerase head domain CLI14_02650 PF12627 Probable RNA and SrmB- binding site of polymerase A CLI14_02655 PF01471 Putative peptidoglycan binding domain CLI14_02655 PF13401 AAA domain CLI14_02665 PF08239 Bacterial SH3 domain CLI14_02670 PF01384 Phosphate transporter family CLI14_02675 PF01865 Protein of unknown function DUF47 CLI14_02680 PF01928 CYTH domain CLI14_02690 PF00672 HAMP domain CLI14_02690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_02695 PF03710 Glutamate-ammonia ligase adenylyltransferase CLI14_02695 PF08335 GlnD PII-uridylyltransferase CLI14_02700 PF01467 Cytidylyltransferase-like CLI14_02700 PF00294 pfkB family carbohydrate kinase CLI14_02705 PF02321 Outer membrane efflux protein CLI14_02710 PF00293 NUDIX domain CLI14_02715 PF06853 Protein of unknown function (DUF1249) CLI14_02720 PF00149 Calcineurin-like phosphoesterase CLI14_02725 PF05728 Uncharacterised protein family (UPF0227) CLI14_02730 PF00204 DNA gyrase B CLI14_02730 PF00986 DNA gyrase B subunit, carboxyl terminus CLI14_02730 PF01751 Toprim domain CLI14_02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_02735 PF03989 DNA gyrase C-terminal domain, beta-propeller CLI14_02735 PF00521 DNA gyrase/topoisomerase IV, subunit A CLI14_02740 PF13180 PDZ domain CLI14_02745 PF00595 PDZ domain CLI14_02750 PF06295 Protein of unknown function (DUF1043) CLI14_02755 PF03969 AFG1-like ATPase CLI14_02765 PF00572 Ribosomal protein L13 CLI14_02770 PF00380 Ribosomal protein S9/S16 CLI14_02775 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CLI14_02775 PF00355 Rieske [2Fe-2S] domain CLI14_02780 PF00033 Cytochrome b/b6/petB CLI14_02780 PF00032 Cytochrome b(C-terminal)/b6/petD CLI14_02785 PF02167 Cytochrome C1 family CLI14_02790 PF02798 Glutathione S-transferase, N-terminal domain CLI14_02790 PF00043 Glutathione S-transferase, C-terminal domain CLI14_02795 PF04386 Stringent starvation protein B CLI14_02800 PF04972 BON domain CLI14_02805 PF13580 SIS domain CLI14_02810 PF02021 Uncharacterised protein family UPF0102 CLI14_02815 PF04348 LppC putative lipoprotein CLI14_02820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI14_02830 PF01795 MraW methylase family CLI14_02835 PF04999 Cell division protein FtsL CLI14_02840 PF03717 Penicillin-binding Protein dimerisation domain CLI14_02840 PF00905 Penicillin binding protein transpeptidase domain CLI14_02845 PF08245 Mur ligase middle domain CLI14_02845 PF02875 Mur ligase family, glutamate ligase domain CLI14_02845 PF01225 Mur ligase family, catalytic domain CLI14_02850 PF08245 Mur ligase middle domain CLI14_02850 PF02875 Mur ligase family, glutamate ligase domain CLI14_02850 PF01225 Mur ligase family, catalytic domain CLI14_02855 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CLI14_02855 PF00953 Glycosyl transferase family 4 CLI14_02860 PF08245 Mur ligase middle domain CLI14_02860 PF02875 Mur ligase family, glutamate ligase domain CLI14_02865 PF01098 Cell cycle protein CLI14_02870 PF03033 Glycosyltransferase family 28 N-terminal domain CLI14_02870 PF04101 Glycosyltransferase family 28 C-terminal domain CLI14_02875 PF08245 Mur ligase middle domain CLI14_02875 PF02875 Mur ligase family, glutamate ligase domain CLI14_02875 PF01225 Mur ligase family, catalytic domain CLI14_02880 PF03799 Cell division protein FtsQ CLI14_02880 PF08478 POTRA domain, FtsQ-type CLI14_02885 PF02491 SHS2 domain inserted in FTSA CLI14_02890 PF00091 Tubulin/FtsZ family, GTPase domain CLI14_02890 PF12327 FtsZ family, C-terminal domain CLI14_02895 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CLI14_02905 PF07516 SecA Wing and Scaffold domain CLI14_02905 PF01043 SecA preprotein cross-linking domain CLI14_02905 PF07517 SecA DEAD-like domain CLI14_02905 PF02810 SEC-C motif CLI14_02910 PF00293 NUDIX domain CLI14_02920 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLI14_02920 PF00117 Glutamine amidotransferase class-I CLI14_02925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLI14_02925 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLI14_02925 PF02142 MGS-like domain CLI14_02930 PF01925 Sulfite exporter TauE/SafE CLI14_02935 PF03466 LysR substrate binding domain CLI14_02935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_02940 PF03458 UPF0126 domain CLI14_02945 PF01497 Periplasmic binding protein CLI14_02970 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLI14_02970 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_02975 PF00310 Glutamine amidotransferases class-II CLI14_02975 PF04898 Glutamate synthase central domain CLI14_02975 PF01645 Conserved region in glutamate synthase CLI14_02975 PF01493 GXGXG motif CLI14_02980 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_02980 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLI14_02985 PF00310 Glutamine amidotransferases class-II CLI14_02985 PF04898 Glutamate synthase central domain CLI14_02985 PF01645 Conserved region in glutamate synthase CLI14_02985 PF01493 GXGXG motif CLI14_02990 PF04055 Radical SAM superfamily CLI14_02990 PF16199 Radical_SAM C-terminal domain CLI14_02995 PF00512 His Kinase A (phospho-acceptor) domain CLI14_02995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_02995 PF00072 Response regulator receiver domain CLI14_02995 PF18415 Histidine kinase receptor ArcB trans-membrane domain CLI14_02995 PF00989 PAS fold CLI14_02995 PF01627 Hpt domain CLI14_03005 PF00486 Transcriptional regulatory protein, C terminal CLI14_03005 PF00072 Response regulator receiver domain CLI14_03010 PF03737 Aldolase/RraA CLI14_03020 PF00696 Amino acid kinase family CLI14_03020 PF00742 Homoserine dehydrogenase CLI14_03020 PF13840 ACT domain CLI14_03020 PF01842 ACT domain CLI14_03020 PF03447 Homoserine dehydrogenase, NAD binding domain CLI14_03025 PF08544 GHMP kinases C terminal CLI14_03025 PF00288 GHMP kinases N terminal domain CLI14_03030 PF00291 Pyridoxal-phosphate dependent enzyme CLI14_03030 PF14821 Threonine synthase N terminus CLI14_03035 PF01228 Glycine radical CLI14_03040 PF01261 Xylose isomerase-like TIM barrel CLI14_03045 PF03167 Uracil DNA glycosylase superfamily CLI14_03060 PF01235 Sodium:alanine symporter family CLI14_03070 PF01026 TatD related DNase CLI14_03075 PF07662 Na+ dependent nucleoside transporter C-terminus CLI14_03075 PF01773 Na+ dependent nucleoside transporter N-terminus CLI14_03075 PF07670 Nucleoside recognition CLI14_03080 PF01791 DeoC/LacD family aldolase CLI14_03085 PF02885 Glycosyl transferase family, helical bundle domain CLI14_03085 PF00591 Glycosyl transferase family, a/b domain CLI14_03085 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CLI14_03090 PF01676 Metalloenzyme superfamily CLI14_03095 PF01048 Phosphorylase superfamily CLI14_03105 PF18429 Domain of unknown function (DUF5609) CLI14_03115 PF18073 Rubredoxin metal binding domain CLI14_03120 PF03144 Elongation factor Tu domain 2 CLI14_03120 PF00009 Elongation factor Tu GTP binding domain CLI14_03120 PF03764 Elongation factor G, domain IV CLI14_03120 PF14492 Elongation Factor G, domain II CLI14_03120 PF00679 Elongation factor G C-terminus CLI14_03125 PF09905 DNA-binding protein VF530 CLI14_03130 PF00501 AMP-binding enzyme CLI14_03135 PF11849 Domain of unknown function (DUF3369) CLI14_03150 PF16363 GDP-mannose 4,6 dehydratase CLI14_03155 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CLI14_03155 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CLI14_03165 PF00356 Bacterial regulatory proteins, lacI family CLI14_03175 PF01544 CorA-like Mg2+ transporter protein CLI14_03185 PF00583 Acetyltransferase (GNAT) family CLI14_03195 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CLI14_03195 PF14602 Hexapeptide repeat of succinyl-transferase CLI14_03200 PF07130 YebG protein CLI14_03215 PF17946 RecC C-terminal domain CLI14_03220 PF12705 PD-(D/E)XK nuclease superfamily CLI14_03220 PF00580 UvrD/REP helicase N-terminal domain CLI14_03220 PF13361 UvrD-like helicase C-terminal domain CLI14_03225 PF13538 UvrD-like helicase C-terminal domain CLI14_03235 PF00696 Amino acid kinase family CLI14_03235 PF00583 Acetyltransferase (GNAT) family CLI14_03245 PF06725 3D domain CLI14_03245 PF03562 MltA specific insert domain CLI14_03250 PF00899 ThiF family CLI14_03255 PF02657 Fe-S metabolism associated domain CLI14_03260 PF00266 Aminotransferase class-V CLI14_03265 PF01965 DJ-1/PfpI family CLI14_03270 PF02558 Ketopantoate reductase PanE/ApbA CLI14_03270 PF08546 Ketopantoate reductase PanE/ApbA C terminal CLI14_03275 PF03502 Nucleoside-specific channel-forming protein, Tsx CLI14_03285 PF04545 Sigma-70, region 4 CLI14_03285 PF04542 Sigma-70 region 2 CLI14_03295 PF07690 Major Facilitator Superfamily CLI14_03300 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLI14_03310 PF05175 Methyltransferase small domain CLI14_03315 PF01722 BolA-like protein CLI14_03320 PF11973 NQRA C-terminal domain CLI14_03320 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CLI14_03325 PF03116 NQR2, RnfD, RnfE family CLI14_03330 PF04205 FMN-binding domain CLI14_03335 PF02508 Rnf-Nqr subunit, membrane protein CLI14_03340 PF02508 Rnf-Nqr subunit, membrane protein CLI14_03345 PF00970 Oxidoreductase FAD-binding domain CLI14_03345 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI14_03345 PF00175 Oxidoreductase NAD-binding domain CLI14_03350 PF02424 ApbE family CLI14_03360 PF11799 impB/mucB/samB family C-terminal domain CLI14_03360 PF00817 impB/mucB/samB family CLI14_03360 PF11798 IMS family HHH motif CLI14_03375 PF00209 Sodium:neurotransmitter symporter family CLI14_03385 PF08443 RimK-like ATP-grasp domain CLI14_03385 PF18030 RimK PreATP-grasp domain CLI14_03390 PF18030 RimK PreATP-grasp domain CLI14_03390 PF08443 RimK-like ATP-grasp domain CLI14_03395 PF07687 Peptidase dimerisation domain CLI14_03395 PF01546 Peptidase family M20/M25/M40 CLI14_03400 PF00860 Permease family CLI14_03415 PF07417 Sigma factor-binding transcriptional regulator Crl CLI14_03420 PF01472 PUA domain CLI14_03420 PF00696 Amino acid kinase family CLI14_03425 PF00171 Aldehyde dehydrogenase family CLI14_03430 PF03477 ATP cone domain CLI14_03435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLI14_03435 PF01872 RibD C-terminal domain CLI14_03440 PF00677 Lumazine binding domain CLI14_03445 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLI14_03445 PF00925 GTP cyclohydrolase II CLI14_03450 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLI14_03460 PF02769 AIR synthase related protein, C-terminal domain CLI14_03460 PF00586 AIR synthase related protein, N-terminal domain CLI14_03465 PF04608 Phosphatidylglycerophosphatase A CLI14_03470 PF11944 Protein of unknown function (DUF3461) CLI14_03480 PF00557 Metallopeptidase family M24 CLI14_03485 PF00318 Ribosomal protein S2 CLI14_03490 PF00889 Elongation factor TS CLI14_03495 PF00696 Amino acid kinase family CLI14_03500 PF01765 Ribosome recycling factor CLI14_03505 PF01255 Putative undecaprenyl diphosphate synthase CLI14_03515 PF13288 DXP reductoisomerase C-terminal domain CLI14_03515 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLI14_03515 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CLI14_03520 PF17820 PDZ domain CLI14_03520 PF02163 Peptidase family M50 CLI14_03525 PF07244 Surface antigen variable number repeat CLI14_03525 PF01103 Surface antigen CLI14_03530 PF03938 Outer membrane protein (OmpH-like) CLI14_03535 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CLI14_03535 PF00132 Bacterial transferase hexapeptide (six repeats) CLI14_03540 PF07977 FabA-like domain CLI14_03545 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CLI14_03545 PF00132 Bacterial transferase hexapeptide (six repeats) CLI14_03550 PF02684 Lipid-A-disaccharide synthetase CLI14_03555 PF01351 Ribonuclease HII CLI14_03560 PF01336 OB-fold nucleic acid binding domain CLI14_03560 PF14579 Helix-hairpin-helix motif CLI14_03560 PF02811 PHP domain CLI14_03560 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLI14_03560 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLI14_03565 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLI14_03570 PF11734 TilS substrate C-terminal domain CLI14_03570 PF09179 TilS substrate binding domain CLI14_03570 PF01171 PP-loop family CLI14_03575 PF00034 Cytochrome c CLI14_03580 PF00543 Nitrogen regulatory protein P-II CLI14_03585 PF03372 Endonuclease/Exonuclease/phosphatase family CLI14_03595 PF01464 Transglycosylase SLT domain CLI14_03595 PF01476 LysM domain CLI14_03600 PF00753 Metallo-beta-lactamase superfamily CLI14_03600 PF16123 Hydroxyacylglutathione hydrolase C-terminus CLI14_03605 PF08241 Methyltransferase domain CLI14_03610 PF00075 RNase H CLI14_03615 PF00929 Exonuclease CLI14_03625 PF02770 Acyl-CoA dehydrogenase, middle domain CLI14_03625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLI14_03625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLI14_03625 PF09317 Domain of unknown function (DUF1974) CLI14_03630 PF13580 SIS domain CLI14_03635 PF13230 Glutamine amidotransferases class-II CLI14_03640 PF00551 Formyl transferase CLI14_03645 PF00586 AIR synthase related protein, N-terminal domain CLI14_03645 PF02769 AIR synthase related protein, C-terminal domain CLI14_03655 PF00849 RNA pseudouridylate synthase CLI14_03655 PF01479 S4 domain CLI14_03670 PF03173 Putative carbohydrate binding domain CLI14_03670 PF00728 Glycosyl hydrolase family 20, catalytic domain CLI14_03670 PF02838 Glycosyl hydrolase family 20, domain 2 CLI14_03670 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CLI14_03680 PF00403 Heavy-metal-associated domain CLI14_03685 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLI14_03690 PF01389 OmpA-like transmembrane domain CLI14_03690 PF00691 OmpA family CLI14_03725 PF04316 Anti-sigma-28 factor, FlgM CLI14_03735 PF01584 CheW-like domain CLI14_03735 PF00072 Response regulator receiver domain CLI14_03740 PF01739 CheR methyltransferase, SAM binding domain CLI14_03740 PF03705 CheR methyltransferase, all-alpha domain CLI14_03745 PF00460 Flagella basal body rod protein CLI14_03750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI14_03750 PF00460 Flagella basal body rod protein CLI14_03755 PF13860 FlgD Ig-like domain CLI14_03755 PF13861 FlgD Tudor-like domain CLI14_03755 PF03963 Flagellar hook capping protein - N-terminal region CLI14_03760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI14_03760 PF00460 Flagella basal body rod protein CLI14_03760 PF07559 Flagellar basal body protein FlaE CLI14_03765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI14_03765 PF00460 Flagella basal body rod protein CLI14_03770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI14_03770 PF00460 Flagella basal body rod protein CLI14_03775 PF02107 Flagellar L-ring protein CLI14_03780 PF02119 Flagellar P-ring protein CLI14_03785 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLI14_03785 PF10135 Rod binding protein CLI14_03790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLI14_03790 PF07196 Flagellin hook IN motif CLI14_03795 PF00669 Bacterial flagellin N-terminal helical region CLI14_03805 PF00700 Bacterial flagellin C-terminal helical region CLI14_03805 PF07196 Flagellin hook IN motif CLI14_03805 PF00669 Bacterial flagellin N-terminal helical region CLI14_03810 PF00700 Bacterial flagellin C-terminal helical region CLI14_03810 PF00669 Bacterial flagellin N-terminal helical region CLI14_03810 PF07196 Flagellin hook IN motif CLI14_03885 PF01926 50S ribosome-binding GTPase CLI14_03885 PF06071 Protein of unknown function (DUF933) CLI14_03890 PF01195 Peptidyl-tRNA hydrolase CLI14_03895 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLI14_03895 PF14572 Phosphoribosyl synthetase-associated domain CLI14_03900 PF00288 GHMP kinases N terminal domain CLI14_03900 PF08544 GHMP kinases C terminal CLI14_03905 PF03550 Outer membrane lipoprotein LolB CLI14_03910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CLI14_03910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CLI14_03910 PF01488 Shikimate / quinate 5-dehydrogenase CLI14_03915 PF03462 PCRF domain CLI14_03915 PF00472 RF-1 domain CLI14_03920 PF13847 Methyltransferase domain CLI14_03920 PF17827 PrmC N-terminal domain CLI14_03925 PF04247 Invasion gene expression up-regulator, SirB CLI14_03930 PF13369 Transglutaminase-like superfamily CLI14_03935 PF00793 DAHP synthetase I family CLI14_03940 PF00149 Calcineurin-like phosphoesterase CLI14_03940 PF02872 5'-nucleotidase, C-terminal domain CLI14_03945 PF04073 Aminoacyl-tRNA editing domain CLI14_03950 PF00860 Permease family CLI14_03965 PF03358 NADPH-dependent FMN reductase CLI14_03970 PF03960 ArsC family CLI14_03975 PF13181 Tetratricopeptide repeat CLI14_03975 PF01435 Peptidase family M48 CLI14_03985 PF01594 AI-2E family transporter CLI14_03990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_03990 PF00672 HAMP domain CLI14_03990 PF02743 Cache domain CLI14_03995 PF00578 AhpC/TSA family CLI14_04005 PF00701 Dihydrodipicolinate synthetase family CLI14_04025 PF01546 Peptidase family M20/M25/M40 CLI14_04025 PF07687 Peptidase dimerisation domain CLI14_04030 PF03960 ArsC family CLI14_04050 PF11143 Protein of unknown function (DUF2919) CLI14_04055 PF04261 Dyp-type peroxidase family CLI14_04060 PF07196 Flagellin hook IN motif CLI14_04060 PF00700 Bacterial flagellin C-terminal helical region CLI14_04060 PF00669 Bacterial flagellin N-terminal helical region CLI14_04065 PF07196 Flagellin hook IN motif CLI14_04065 PF00700 Bacterial flagellin C-terminal helical region CLI14_04065 PF00669 Bacterial flagellin N-terminal helical region CLI14_04070 PF07196 Flagellin hook IN motif CLI14_04070 PF00700 Bacterial flagellin C-terminal helical region CLI14_04070 PF00669 Bacterial flagellin N-terminal helical region CLI14_04075 PF03646 FlaG protein CLI14_04080 PF02465 Flagellar hook-associated protein 2 N-terminus CLI14_04080 PF07196 Flagellin hook IN motif CLI14_04080 PF07195 Flagellar hook-associated protein 2 C-terminus CLI14_04090 PF02561 Flagellar protein FliS CLI14_04100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_04100 PF00512 His Kinase A (phospho-acceptor) domain CLI14_04105 PF00158 Sigma-54 interaction domain CLI14_04105 PF00072 Response regulator receiver domain CLI14_04105 PF02954 Bacterial regulatory protein, Fis family CLI14_04110 PF02049 Flagellar hook-basal body complex protein FliE CLI14_04115 PF01514 Secretory protein of YscJ/FliF family CLI14_04115 PF08345 Flagellar M-ring protein C-terminal CLI14_04120 PF14842 FliG N-terminal domain CLI14_04120 PF01706 FliG C-terminal domain CLI14_04120 PF14841 FliG middle domain CLI14_04130 PF18269 T3SS EscN ATPase C-terminal domain CLI14_04130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI14_04150 PF02154 Flagellar motor switch protein FliM CLI14_04150 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLI14_04155 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLI14_04160 PF04347 Flagellar biosynthesis protein, FliO CLI14_04165 PF00813 FliP family CLI14_04170 PF01313 Bacterial export proteins, family 3 CLI14_04175 PF01311 Bacterial export proteins, family 1 CLI14_04180 PF01312 FlhB HrpN YscU SpaS Family CLI14_04185 PF01713 Smr domain CLI14_04190 PF05175 Methyltransferase small domain CLI14_04195 PF01264 Chorismate synthase CLI14_04200 PF03458 UPF0126 domain CLI14_04205 PF04315 Elongation factor P hydroxylase CLI14_04210 PF08891 YfcL protein CLI14_04215 PF03358 NADPH-dependent FMN reductase CLI14_04220 PF01266 FAD dependent oxidoreductase CLI14_04220 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CLI14_04225 PF02801 Beta-ketoacyl synthase, C-terminal domain CLI14_04225 PF00109 Beta-ketoacyl synthase, N-terminal domain CLI14_04230 PF11890 Domain of unknown function (DUF3410) CLI14_04230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLI14_04230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI14_04235 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLI14_04235 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLI14_04240 PF01475 Ferric uptake regulator family CLI14_04250 PF03466 LysR substrate binding domain CLI14_04250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_04255 PF03788 LrgA family CLI14_04260 PF04172 LrgB-like family CLI14_04265 PF00258 Flavodoxin CLI14_04275 PF12697 Alpha/beta hydrolase family CLI14_04280 PF03925 SeqA protein C-terminal domain CLI14_04280 PF17206 SeqA protein N-terminal domain CLI14_04285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLI14_04285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLI14_04285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLI14_04285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLI14_04295 PF01784 NIF3 (NGG1p interacting factor 3) CLI14_04300 PF00285 Citrate synthase, C-terminal domain CLI14_04305 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CLI14_04310 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CLI14_04315 PF02910 Fumarate reductase flavoprotein C-term CLI14_04315 PF00890 FAD binding domain CLI14_04320 PF13085 2Fe-2S iron-sulfur cluster binding domain CLI14_04325 PF02779 Transketolase, pyrimidine binding domain CLI14_04325 PF16870 2-oxoglutarate dehydrogenase C-terminal CLI14_04325 PF00676 Dehydrogenase E1 component CLI14_04325 PF16078 2-oxoglutarate dehydrogenase N-terminus CLI14_04330 PF02817 e3 binding domain CLI14_04330 PF00364 Biotin-requiring enzyme CLI14_04330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLI14_04335 PF08442 ATP-grasp domain CLI14_04335 PF00549 CoA-ligase CLI14_04340 PF00549 CoA-ligase CLI14_04340 PF02629 CoA binding domain CLI14_04345 PF00950 ABC 3 transport family CLI14_04350 PF00005 ABC transporter CLI14_04355 PF01297 Zinc-uptake complex component A periplasmic CLI14_04360 PF02311 AraC-like ligand binding domain CLI14_04360 PF12833 Helix-turn-helix domain CLI14_04365 PF04023 FeoA domain CLI14_04370 PF07664 Ferrous iron transport protein B C terminus CLI14_04370 PF02421 Ferrous iron transport protein B CLI14_04370 PF07670 Nucleoside recognition CLI14_04385 PF00750 tRNA synthetases class I (R) CLI14_04385 PF05746 DALR anticodon binding domain CLI14_04385 PF03485 Arginyl tRNA synthetase N terminal domain CLI14_04390 PF06185 YecM protein CLI14_04395 PF05193 Peptidase M16 inactive domain CLI14_04395 PF00675 Insulinase (Peptidase family M16) CLI14_04400 PF00300 Histidine phosphatase superfamily (branch 1) CLI14_04405 PF00771 FHIPEP family CLI14_04410 PF00448 SRP54-type protein, GTPase domain CLI14_04415 PF10609 NUBPL iron-transfer P-loop NTPase CLI14_04420 PF04545 Sigma-70, region 4 CLI14_04420 PF04539 Sigma-70 region 3 CLI14_04420 PF04542 Sigma-70 region 2 CLI14_04425 PF00072 Response regulator receiver domain CLI14_04430 PF04344 Chemotaxis phosphatase, CheZ CLI14_04435 PF01584 CheW-like domain CLI14_04435 PF02895 Signal transducing histidine kinase, homodimeric domain CLI14_04435 PF07194 P2 response regulator binding domain CLI14_04435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_04435 PF01627 Hpt domain CLI14_04440 PF00072 Response regulator receiver domain CLI14_04440 PF01339 CheB methylesterase CLI14_04445 PF13614 AAA domain CLI14_04455 PF01584 CheW-like domain CLI14_04465 PF00005 ABC transporter CLI14_04470 PF03379 CcmB protein CLI14_04475 PF01578 Cytochrome C assembly protein CLI14_04485 PF03100 CcmE CLI14_04490 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CLI14_04490 PF01578 Cytochrome C assembly protein CLI14_04495 PF08534 Redoxin CLI14_04500 PF03918 Cytochrome C biogenesis protein CLI14_04510 PF04333 MlaA lipoprotein CLI14_04525 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLI14_04525 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLI14_04530 PF00462 Glutaredoxin CLI14_04535 PF01751 Toprim domain CLI14_04535 PF01131 DNA topoisomerase CLI14_04550 PF02634 FdhD/NarQ family CLI14_04555 PF00384 Molybdopterin oxidoreductase CLI14_04565 PF00884 Sulfatase CLI14_04565 PF11893 Domain of unknown function (DUF3413) CLI14_04570 PF07208 Protein of unknown function (DUF1414) CLI14_04575 PF04245 37-kD nucleoid-associated bacterial protein CLI14_04585 PF03553 Na+/H+ antiporter family CLI14_04590 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLI14_04590 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLI14_04595 PF01914 MarC family integral membrane protein CLI14_04600 PF00171 Aldehyde dehydrogenase family CLI14_04600 PF00465 Iron-containing alcohol dehydrogenase CLI14_04610 PF12111 Polyribonucleotide phosphorylase C terminal CLI14_04610 PF10150 Ribonuclease E/G family CLI14_04610 PF00575 S1 RNA binding domain CLI14_04615 PF01479 S4 domain CLI14_04615 PF00849 RNA pseudouridylate synthase CLI14_04620 PF02545 Maf-like protein CLI14_04625 PF02620 Large ribosomal RNA subunit accumulation protein YceD CLI14_04630 PF01783 Ribosomal L32p protein family CLI14_04635 PF02504 Fatty acid synthesis protein CLI14_04640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLI14_04640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLI14_04645 PF00698 Acyl transferase domain CLI14_04655 PF00550 Phosphopantetheine attachment site CLI14_04660 PF02801 Beta-ketoacyl synthase, C-terminal domain CLI14_04660 PF00109 Beta-ketoacyl synthase, N-terminal domain CLI14_04665 PF01063 Amino-transferase class IV CLI14_04670 PF02618 YceG-like family CLI14_04675 PF02223 Thymidylate kinase CLI14_04680 PF09115 DNA polymerase III, delta subunit, C terminal CLI14_04685 PF01026 TatD related DNase CLI14_04690 PF00367 phosphotransferase system, EIIB CLI14_04690 PF02378 Phosphotransferase system, EIIC CLI14_04700 PF00209 Sodium:neurotransmitter symporter family CLI14_04715 PF01734 Patatin-like phospholipase CLI14_04720 PF02887 Pyruvate kinase, alpha/beta domain CLI14_04720 PF00224 Pyruvate kinase, barrel domain CLI14_04725 PF00480 ROK family CLI14_04730 PF01584 CheW-like domain CLI14_04730 PF00072 Response regulator receiver domain CLI14_04735 PF00106 short chain dehydrogenase CLI14_04740 PF01343 Peptidase family S49 CLI14_04740 PF08496 Peptidase family S49 N-terminal CLI14_04755 PF01966 HD domain CLI14_04755 PF13286 Phosphohydrolase-associated domain CLI14_04765 PF00155 Aminotransferase class I and II CLI14_04775 PF00425 chorismate binding enzyme CLI14_04780 PF16582 Middle domain of thiamine pyrophosphate CLI14_04780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLI14_04780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLI14_04785 PF12697 Alpha/beta hydrolase family CLI14_04790 PF00378 Enoyl-CoA hydratase/isomerase CLI14_04795 PF13378 Enolase C-terminal domain-like CLI14_04800 PF00501 AMP-binding enzyme CLI14_04800 PF13193 AMP-binding enzyme C-terminal domain CLI14_04820 PF07690 Major Facilitator Superfamily CLI14_04835 PF00291 Pyridoxal-phosphate dependent enzyme CLI14_04840 PF01037 Lrp/AsnC ligand binding domain CLI14_04840 PF13404 AsnC-type helix-turn-helix domain CLI14_04850 PF09619 Type III secretion system lipoprotein chaperone (YscW) CLI14_04855 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLI14_04865 PF00990 Diguanylate cyclase, GGDEF domain CLI14_04875 PF03466 LysR substrate binding domain CLI14_04875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_04890 PF00501 AMP-binding enzyme CLI14_04900 PF00106 short chain dehydrogenase CLI14_04910 PF00486 Transcriptional regulatory protein, C terminal CLI14_04910 PF00072 Response regulator receiver domain CLI14_04915 PF08521 Two-component sensor kinase N-terminal CLI14_04915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_04915 PF00512 His Kinase A (phospho-acceptor) domain CLI14_04920 PF00884 Sulfatase CLI14_04920 PF08019 Phosphoethanolamine transferase EptA/EptB CLI14_04925 PF01037 Lrp/AsnC ligand binding domain CLI14_04930 PF01810 LysE type translocator CLI14_04935 PF02080 TrkA-C domain CLI14_04935 PF06826 Predicted Permease Membrane Region CLI14_04940 PF00072 Response regulator receiver domain CLI14_04940 PF00486 Transcriptional regulatory protein, C terminal CLI14_04945 PF00672 HAMP domain CLI14_04945 PF00512 His Kinase A (phospho-acceptor) domain CLI14_04945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_04960 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CLI14_04960 PF00356 Bacterial regulatory proteins, lacI family CLI14_04965 PF00920 Dehydratase family CLI14_04970 PF01202 Shikimate kinase CLI14_04975 PF02447 GntP family permease CLI14_04980 PF01081 KDPG and KHG aldolase CLI14_04995 PF06629 MltA-interacting protein MipA CLI14_05000 PF02801 Beta-ketoacyl synthase, C-terminal domain CLI14_05000 PF00109 Beta-ketoacyl synthase, N-terminal domain CLI14_05010 PF07977 FabA-like domain CLI14_05015 PF02801 Beta-ketoacyl synthase, C-terminal domain CLI14_05015 PF00109 Beta-ketoacyl synthase, N-terminal domain CLI14_05040 PF00221 Aromatic amino acid lyase CLI14_05045 PF00535 Glycosyl transferase family 2 CLI14_05055 PF00501 AMP-binding enzyme CLI14_05055 PF13193 AMP-binding enzyme C-terminal domain CLI14_05065 PF00550 Phosphopantetheine attachment site CLI14_05070 PF00550 Phosphopantetheine attachment site CLI14_05090 PF04820 Tryptophan halogenase CLI14_05095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_05095 PF00072 Response regulator receiver domain CLI14_05095 PF09308 LuxQ, periplasmic CLI14_05095 PF00512 His Kinase A (phospho-acceptor) domain CLI14_05100 PF03707 Bacterial signalling protein N terminal repeat CLI14_05100 PF00563 EAL domain CLI14_05100 PF00990 Diguanylate cyclase, GGDEF domain CLI14_05105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI14_05110 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_05115 PF12911 N-terminal TM domain of oligopeptide transport permease C CLI14_05115 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_05120 PF00005 ABC transporter CLI14_05120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI14_05125 PF00005 ABC transporter CLI14_05125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI14_05130 PF13409 Glutathione S-transferase, N-terminal domain CLI14_05135 PF07085 DRTGG domain CLI14_05135 PF01515 Phosphate acetyl/butaryl transferase CLI14_05140 PF00871 Acetokinase family CLI14_05145 PF04217 Protein of unknown function, DUF412 CLI14_05155 PF02653 Branched-chain amino acid transport system / permease component CLI14_05160 PF00005 ABC transporter CLI14_05165 PF01207 Dihydrouridine synthase (Dus) CLI14_05170 PF01043 SecA preprotein cross-linking domain CLI14_05170 PF07516 SecA Wing and Scaffold domain CLI14_05170 PF07517 SecA DEAD-like domain CLI14_05170 PF02810 SEC-C motif CLI14_05175 PF03548 Outer membrane lipoprotein carrier protein LolA CLI14_05180 PF16193 AAA C-terminal domain CLI14_05180 PF00004 ATPase family associated with various cellular activities (AAA) CLI14_05180 PF12002 MgsA AAA+ ATPase C terminal CLI14_05185 PF02403 Seryl-tRNA synthetase N-terminal domain CLI14_05185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI14_05190 PF00202 Aminotransferase class-III CLI14_05195 PF04055 Radical SAM superfamily CLI14_05195 PF06968 Biotin and Thiamin Synthesis associated domain CLI14_05200 PF00155 Aminotransferase class I and II CLI14_05205 PF08241 Methyltransferase domain CLI14_05215 PF02600 Disulfide bond formation protein DsbB CLI14_05220 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CLI14_05225 PF00392 Bacterial regulatory proteins, gntR family CLI14_05225 PF07840 FadR C-terminal domain CLI14_05235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_05235 PF00672 HAMP domain CLI14_05240 PF01230 HIT domain CLI14_05255 PF13036 Peptidoglycan-synthase activator LpoB CLI14_05255 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CLI14_05270 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_05275 PF12563 Hemolytic toxin N terminal CLI14_05275 PF16458 Beta-prism lectin CLI14_05275 PF07968 Leukocidin/Hemolysin toxin family CLI14_05285 PF00270 DEAD/DEAH box helicase CLI14_05285 PF02559 CarD-like/TRCF domain CLI14_05285 PF17757 UvrB interaction domain CLI14_05285 PF03461 TRCF domain CLI14_05285 PF00271 Helicase conserved C-terminal domain CLI14_05295 PF12704 MacB-like periplasmic core domain CLI14_05295 PF02687 FtsX-like permease family CLI14_05300 PF00005 ABC transporter CLI14_05305 PF02687 FtsX-like permease family CLI14_05305 PF12704 MacB-like periplasmic core domain CLI14_05315 PF13567 Domain of unknown function (DUF4131) CLI14_05315 PF00753 Metallo-beta-lactamase superfamily CLI14_05315 PF03772 Competence protein CLI14_05320 PF00664 ABC transporter transmembrane region CLI14_05320 PF00005 ABC transporter CLI14_05325 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CLI14_05330 PF03966 Trm112p-like protein CLI14_05335 PF02348 Cytidylyltransferase CLI14_05345 PF04293 SpoVR like protein CLI14_05350 PF04285 Protein of unknown function (DUF444) CLI14_05355 PF06798 PrkA serine protein kinase C-terminal domain CLI14_05355 PF08298 PrkA AAA domain CLI14_05370 PF04055 Radical SAM superfamily CLI14_05375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_05375 PF00672 HAMP domain CLI14_05385 PF02901 Pyruvate formate lyase-like CLI14_05385 PF01228 Glycine radical CLI14_05400 PF00005 ABC transporter CLI14_05405 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI14_05410 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_05415 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_05420 PF03372 Endonuclease/Exonuclease/phosphatase family CLI14_05425 PF00672 HAMP domain CLI14_05425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_05430 PF10689 Protein of unknown function (DUF2496) CLI14_05435 PF07445 Primosomal replication protein priC CLI14_05440 PF01925 Sulfite exporter TauE/SafE CLI14_05445 PF13307 Helicase C-terminal domain CLI14_05445 PF06733 DEAD_2 CLI14_05455 PF02810 SEC-C motif CLI14_05460 PF08668 HDOD domain CLI14_05460 PF00563 EAL domain CLI14_05465 PF00149 Calcineurin-like phosphoesterase CLI14_05470 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLI14_05475 PF09190 DALR domain CLI14_05475 PF01406 tRNA synthetases class I (C) catalytic domain CLI14_05480 PF02075 Crossover junction endodeoxyribonuclease RuvC CLI14_05485 PF01330 RuvA N terminal domain CLI14_05485 PF07499 RuvA, C-terminal domain CLI14_05490 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLI14_05490 PF05491 RuvB C-terminal winged helix domain CLI14_05490 PF17864 RuvB AAA lid domain CLI14_05495 PF01654 Cytochrome bd terminal oxidase subunit I CLI14_05500 PF02322 Cytochrome bd terminal oxidase subunit II CLI14_05505 PF08173 Membrane bound YbgT-like protein CLI14_05510 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CLI14_05515 PF03061 Thioesterase superfamily CLI14_05520 PF01618 MotA/TolQ/ExbB proton channel family CLI14_05525 PF02472 Biopolymer transport protein ExbD/TolR CLI14_05540 PF00691 OmpA family CLI14_05545 PF13525 Outer membrane lipoprotein CLI14_05545 PF16331 TolA binding protein trimerisation CLI14_05550 PF02445 Quinolinate synthetase A protein CLI14_05555 PF03050 Transposase IS66 family CLI14_05555 PF13005 zinc-finger binding domain of transposase IS66 CLI14_05555 PF13007 Transposase C of IS166 homeodomain CLI14_05555 PF13817 IS66 C-terminal element CLI14_05575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_05575 PF00072 Response regulator receiver domain CLI14_05575 PF09308 LuxQ, periplasmic CLI14_05575 PF00512 His Kinase A (phospho-acceptor) domain CLI14_05580 PF06610 L-alanine exporter CLI14_05590 PF13356 Arm DNA-binding domain CLI14_05590 PF00589 Phage integrase family CLI14_05600 PF13737 Transposase DDE domain CLI14_05605 PF12102 Domain of unknown function (DUF3578) CLI14_05605 PF07728 AAA domain (dynein-related subfamily) CLI14_05615 PF01966 HD domain CLI14_05615 PF13286 Phosphohydrolase-associated domain CLI14_05625 PF00563 EAL domain CLI14_05625 PF00990 Diguanylate cyclase, GGDEF domain CLI14_05625 PF03707 Bacterial signalling protein N terminal repeat CLI14_05625 PF13188 PAS domain CLI14_05630 PF00171 Aldehyde dehydrogenase family CLI14_05645 PF16295 Tetracyclin repressor-like, C-terminal domain CLI14_05645 PF00440 Bacterial regulatory proteins, tetR family CLI14_05650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLI14_05650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLI14_05650 PF02770 Acyl-CoA dehydrogenase, middle domain CLI14_05650 PF09317 Domain of unknown function (DUF1974) CLI14_05655 PF12241 Trans-2-enoyl-CoA reductase catalytic region CLI14_05655 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CLI14_05655 PF07055 Enoyl reductase FAD binding domain CLI14_05685 PF02913 FAD linked oxidases, C-terminal domain CLI14_05685 PF13183 4Fe-4S dicluster domain CLI14_05685 PF01565 FAD binding domain CLI14_05690 PF04191 Phospholipid methyltransferase CLI14_05700 PF00221 Aromatic amino acid lyase CLI14_05705 PF17392 Urocanase C-terminal domain CLI14_05705 PF17391 Urocanase N-terminal domain CLI14_05705 PF01175 Urocanase Rossmann-like domain CLI14_05710 PF00491 Arginase family CLI14_05715 PF01979 Amidohydrolase family CLI14_05720 PF00392 Bacterial regulatory proteins, gntR family CLI14_05720 PF07702 UTRA domain CLI14_05730 PF04269 Protein of unknown function, DUF440 CLI14_05735 PF01132 Elongation factor P (EF-P) OB domain CLI14_05735 PF09285 Elongation factor P, C-terminal CLI14_05735 PF08207 Elongation factor P (EF-P) KOW-like domain CLI14_05745 PF00136 DNA polymerase family B CLI14_05745 PF03104 DNA polymerase family B, exonuclease domain CLI14_05750 PF00072 Response regulator receiver domain CLI14_05750 PF00196 Bacterial regulatory proteins, luxR family CLI14_05755 PF02151 UvrB/uvrC motif CLI14_05755 PF08459 UvrC Helix-hairpin-helix N-terminal CLI14_05755 PF01541 GIY-YIG catalytic domain CLI14_05760 PF01066 CDP-alcohol phosphatidyltransferase CLI14_05795 PF01409 tRNA synthetases class II core domain (F) CLI14_05795 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLI14_05800 PF03484 tRNA synthetase B5 domain CLI14_05800 PF03483 B3/4 domain CLI14_05800 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLI14_05800 PF01588 Putative tRNA binding domain CLI14_05800 PF03147 Ferredoxin-fold anticodon binding domain CLI14_05815 PF05724 Thiopurine S-methyltransferase (TPMT) CLI14_05820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_05820 PF13426 PAS domain CLI14_05820 PF08447 PAS fold CLI14_05825 PF02222 ATP-grasp domain CLI14_05830 PF00563 EAL domain CLI14_05830 PF08448 PAS fold CLI14_05830 PF00990 Diguanylate cyclase, GGDEF domain CLI14_05830 PF08447 PAS fold CLI14_05835 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CLI14_05835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLI14_05840 PF04172 LrgB-like family CLI14_05845 PF03788 LrgA family CLI14_05850 PF00929 Exonuclease CLI14_05850 PF08411 Exonuclease C-terminal CLI14_05860 PF13460 NAD(P)H-binding CLI14_05865 PF02743 Cache domain CLI14_05865 PF00672 HAMP domain CLI14_05865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_05870 PF00005 ABC transporter CLI14_05870 PF03412 Peptidase C39 family CLI14_05870 PF00664 ABC transporter transmembrane region CLI14_05880 PF03412 Peptidase C39 family CLI14_05880 PF00664 ABC transporter transmembrane region CLI14_05880 PF00005 ABC transporter CLI14_05890 PF02794 RTX toxin acyltransferase family CLI14_05895 PF16671 Actin cross-linking domain CLI14_05895 PF12146 Serine aminopeptidase, S33 CLI14_05895 PF11647 Membrane Localization Domain CLI14_05895 PF11713 Peptidase C80 family CLI14_05895 PF07634 RtxA repeat CLI14_05905 PF02654 Cobalamin-5-phosphate synthase CLI14_05910 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CLI14_05920 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CLI14_05925 PF01032 FecCD transport family CLI14_05950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_05950 PF03466 LysR substrate binding domain CLI14_05960 PF01863 Protein of unknown function DUF45 CLI14_05965 PF05971 RNA methyltransferase CLI14_05980 PF04204 Homoserine O-succinyltransferase CLI14_06000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLI14_06015 PF17203 Single cache domain 3 CLI14_06015 PF00989 PAS fold CLI14_06015 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLI14_06015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_06020 PF00072 Response regulator receiver domain CLI14_06020 PF12431 Transcriptional regulator CLI14_06030 PF00072 Response regulator receiver domain CLI14_06030 PF01584 CheW-like domain CLI14_06035 PF03714 Bacterial pullanase-associated domain CLI14_06035 PF11852 Domain of unknown function (DUF3372) CLI14_06035 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLI14_06035 PF17967 Pullulanase N2 domain CLI14_06035 PF18494 Pullulanase Ins domain CLI14_06045 PF00990 Diguanylate cyclase, GGDEF domain CLI14_06045 PF00072 Response regulator receiver domain CLI14_06070 PF02899 Phage integrase, N-terminal SAM-like domain CLI14_06070 PF00589 Phage integrase family CLI14_06095 PF04717 Type VI secretion system, phage-baseplate injector CLI14_06095 PF16671 Actin cross-linking domain CLI14_06140 PF10431 C-terminal, D2-small domain, of ClpB protein CLI14_06140 PF00004 ATPase family associated with various cellular activities (AAA) CLI14_06140 PF07724 AAA domain (Cdc48 subfamily) CLI14_06140 PF17871 AAA lid domain CLI14_06145 PF07478 D-ala D-ala ligase C-terminus CLI14_06165 PF16697 Inner membrane component of T3SS, cytoplasmic domain CLI14_06190 PF00069 Protein kinase domain CLI14_06190 PF08239 Bacterial SH3 domain CLI14_06220 PF00486 Transcriptional regulatory protein, C terminal CLI14_06240 PF13007 Transposase C of IS166 homeodomain CLI14_06240 PF13817 IS66 C-terminal element CLI14_06240 PF13005 zinc-finger binding domain of transposase IS66 CLI14_06240 PF03050 Transposase IS66 family CLI14_06260 PF01042 Endoribonuclease L-PSP CLI14_06270 PF02322 Cytochrome bd terminal oxidase subunit II CLI14_06275 PF01654 Cytochrome bd terminal oxidase subunit I CLI14_06290 PF05114 Protein of unknown function (DUF692) CLI14_06315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_06315 PF00672 HAMP domain CLI14_06315 PF12729 Four helix bundle sensory module for signal transduction CLI14_06325 PF07885 Ion channel CLI14_06330 PF00563 EAL domain CLI14_06330 PF12792 CSS motif domain associated with EAL CLI14_06335 PF00294 pfkB family carbohydrate kinase CLI14_06340 PF00367 phosphotransferase system, EIIB CLI14_06340 PF02378 Phosphotransferase system, EIIC CLI14_06345 PF00356 Bacterial regulatory proteins, lacI family CLI14_06350 PF00251 Glycosyl hydrolases family 32 N-terminal domain CLI14_06350 PF08244 Glycosyl hydrolases family 32 C terminal CLI14_06355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_06355 PF00672 HAMP domain CLI14_06370 PF00005 ABC transporter CLI14_06375 PF01032 FecCD transport family CLI14_06385 PF02472 Biopolymer transport protein ExbD/TolR CLI14_06390 PF01618 MotA/TolQ/ExbB proton channel family CLI14_06395 PF03544 Gram-negative bacterial TonB protein C-terminal CLI14_06400 PF06228 Haem utilisation ChuX/HutX CLI14_06405 PF01243 Pyridoxamine 5'-phosphate oxidase CLI14_06410 PF07715 TonB-dependent Receptor Plug Domain CLI14_06410 PF04886 PT repeat CLI14_06410 PF00593 TonB dependent receptor CLI14_06415 PF00480 ROK family CLI14_06420 PF00925 GTP cyclohydrolase II CLI14_06445 PF01471 Putative peptidoglycan binding domain CLI14_06445 PF03734 L,D-transpeptidase catalytic domain CLI14_06450 PF05951 Bacterial protein of unknown function (DUF882) CLI14_06455 PF00753 Metallo-beta-lactamase superfamily CLI14_06470 PF01047 MarR family CLI14_06475 PF02028 BCCT, betaine/carnitine/choline family transporter CLI14_06480 PF00672 HAMP domain CLI14_06480 PF02743 Cache domain CLI14_06480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_06485 PF02811 PHP domain CLI14_06485 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLI14_06485 PF00929 Exonuclease CLI14_06485 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLI14_06485 PF14579 Helix-hairpin-helix motif CLI14_06485 PF14480 DNA polymerase III polC-type N-terminus I CLI14_06485 PF11490 DNA polymerase III polC-type N-terminus II CLI14_06490 PF00571 CBS domain CLI14_06495 PF00155 Aminotransferase class I and II CLI14_06500 PF01966 HD domain CLI14_06500 PF00672 HAMP domain CLI14_06505 PF12729 Four helix bundle sensory module for signal transduction CLI14_06505 PF00672 HAMP domain CLI14_06505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_06510 PF00072 Response regulator receiver domain CLI14_06520 PF01584 CheW-like domain CLI14_06520 PF02895 Signal transducing histidine kinase, homodimeric domain CLI14_06520 PF09078 CheY binding CLI14_06520 PF01627 Hpt domain CLI14_06520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_06525 PF12729 Four helix bundle sensory module for signal transduction CLI14_06525 PF00672 HAMP domain CLI14_06525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_06530 PF01584 CheW-like domain CLI14_06535 PF01739 CheR methyltransferase, SAM binding domain CLI14_06535 PF03705 CheR methyltransferase, all-alpha domain CLI14_06540 PF03975 CheD chemotactic sensory transduction CLI14_06545 PF00072 Response regulator receiver domain CLI14_06545 PF01339 CheB methylesterase CLI14_06555 PF00152 tRNA synthetases class II (D, K and N) CLI14_06555 PF01336 OB-fold nucleic acid binding domain CLI14_06560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_06560 PF17200 Single Cache domain 2 CLI14_06560 PF00672 HAMP domain CLI14_06565 PF01242 6-pyruvoyl tetrahydropterin synthase CLI14_06570 PF04231 Endonuclease I CLI14_06575 PF12561 ToxR activated gene A lipoprotein domain CLI14_06575 PF00041 Fibronectin type III domain CLI14_06580 PF03313 Serine dehydratase alpha chain CLI14_06580 PF03315 Serine dehydratase beta chain CLI14_06585 PF03222 Tryptophan/tyrosine permease family CLI14_06590 PF00293 NUDIX domain CLI14_06595 PF04715 Anthranilate synthase component I, N terminal region CLI14_06595 PF00425 chorismate binding enzyme CLI14_06610 PF04317 YcjX-like family, DUF463 CLI14_06615 PF05128 Domain of unknown function (DUF697) CLI14_06620 PF00158 Sigma-54 interaction domain CLI14_06620 PF18024 Helix-turn-helix domain CLI14_06625 PF13302 Acetyltransferase (GNAT) domain CLI14_06635 PF00990 Diguanylate cyclase, GGDEF domain CLI14_06640 PF00892 EamA-like transporter family CLI14_06645 PF00842 Alanine racemase, C-terminal domain CLI14_06645 PF01168 Alanine racemase, N-terminal domain CLI14_06650 PF00672 HAMP domain CLI14_06650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_06655 PF00939 Sodium:sulfate symporter transmembrane region CLI14_06660 PF00512 His Kinase A (phospho-acceptor) domain CLI14_06660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_06660 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI14_06665 PF00072 Response regulator receiver domain CLI14_06665 PF00158 Sigma-54 interaction domain CLI14_06665 PF02954 Bacterial regulatory protein, Fis family CLI14_06675 PF00313 'Cold-shock' DNA-binding domain CLI14_06680 PF03264 NapC/NirT cytochrome c family, N-terminal region CLI14_06685 PF18364 Molybdopterin oxidoreductase N-terminal domain CLI14_06685 PF01568 Molydopterin dinucleotide binding domain CLI14_06685 PF00384 Molybdopterin oxidoreductase CLI14_06690 PF00270 DEAD/DEAH box helicase CLI14_06690 PF00271 Helicase conserved C-terminal domain CLI14_06695 PF00232 Glycosyl hydrolase family 1 CLI14_06700 PF00356 Bacterial regulatory proteins, lacI family CLI14_06725 PF00465 Iron-containing alcohol dehydrogenase CLI14_06730 PF00012 Hsp70 protein CLI14_06735 PF00012 Hsp70 protein CLI14_06770 PF00270 DEAD/DEAH box helicase CLI14_06770 PF11898 Domain of unknown function (DUF3418) CLI14_06770 PF04408 Helicase associated domain (HA2) CLI14_06770 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CLI14_06770 PF00271 Helicase conserved C-terminal domain CLI14_06780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_06780 PF03466 LysR substrate binding domain CLI14_06785 PF07690 Major Facilitator Superfamily CLI14_06805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLI14_06805 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLI14_06810 PF00474 Sodium:solute symporter family CLI14_06815 PF00571 CBS domain CLI14_06815 PF01380 SIS domain CLI14_06820 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLI14_06820 PF00929 Exonuclease CLI14_06820 PF02811 PHP domain CLI14_06820 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLI14_06820 PF14579 Helix-hairpin-helix motif CLI14_06830 PF04962 KduI/IolB family CLI14_06835 PF00205 Thiamine pyrophosphate enzyme, central domain CLI14_06835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLI14_06835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLI14_06840 PF00294 pfkB family carbohydrate kinase CLI14_06845 PF01261 Xylose isomerase-like TIM barrel CLI14_06855 PF00171 Aldehyde dehydrogenase family CLI14_06865 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLI14_06865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLI14_06870 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CLI14_06885 PF13737 Transposase DDE domain CLI14_06895 PF13817 IS66 C-terminal element CLI14_06895 PF13007 Transposase C of IS166 homeodomain CLI14_06895 PF13005 zinc-finger binding domain of transposase IS66 CLI14_06895 PF03050 Transposase IS66 family CLI14_06910 PF00271 Helicase conserved C-terminal domain CLI14_06930 PF13005 zinc-finger binding domain of transposase IS66 CLI14_06930 PF13007 Transposase C of IS166 homeodomain CLI14_06930 PF13817 IS66 C-terminal element CLI14_06930 PF03050 Transposase IS66 family CLI14_06940 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CLI14_06945 PF01810 LysE type translocator CLI14_06950 PF01235 Sodium:alanine symporter family CLI14_06965 PF01546 Peptidase family M20/M25/M40 CLI14_06965 PF07687 Peptidase dimerisation domain CLI14_06970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLI14_06975 PF04209 homogentisate 1,2-dioxygenase CLI14_06985 PF14497 Glutathione S-transferase, C-terminal domain CLI14_06985 PF02798 Glutathione S-transferase, N-terminal domain CLI14_06990 PF04151 Bacterial pre-peptidase C-terminal domain CLI14_06990 PF04389 Peptidase family M28 CLI14_07015 PF01618 MotA/TolQ/ExbB proton channel family CLI14_07020 PF01618 MotA/TolQ/ExbB proton channel family CLI14_07025 PF02472 Biopolymer transport protein ExbD/TolR CLI14_07040 PF01734 Patatin-like phospholipase CLI14_07045 PF14743 DNA ligase OB-like domain CLI14_07045 PF01068 ATP dependent DNA ligase domain CLI14_07050 PF01554 MatE CLI14_07070 PF00877 NlpC/P60 family CLI14_07075 PF12729 Four helix bundle sensory module for signal transduction CLI14_07075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_07075 PF00672 HAMP domain CLI14_07090 PF00480 ROK family CLI14_07100 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CLI14_07105 PF12804 MobA-like NTP transferase domain CLI14_07110 PF00005 ABC transporter CLI14_07110 PF08402 TOBE domain CLI14_07115 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_07125 PF07690 Major Facilitator Superfamily CLI14_07130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_07130 PF07730 Histidine kinase CLI14_07130 PF05231 MASE1 CLI14_07135 PF00072 Response regulator receiver domain CLI14_07135 PF00196 Bacterial regulatory proteins, luxR family CLI14_07140 PF00005 ABC transporter CLI14_07140 PF12848 ABC transporter CLI14_07145 PF00909 Ammonium Transporter Family CLI14_07150 PF02146 Sir2 family CLI14_07155 PF13416 Bacterial extracellular solute-binding protein CLI14_07160 PF13416 Bacterial extracellular solute-binding protein CLI14_07165 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_07170 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_07175 PF00005 ABC transporter CLI14_07175 PF08402 TOBE domain CLI14_07195 PF01171 PP-loop family CLI14_07200 PF00582 Universal stress protein family CLI14_07205 PF13545 Crp-like helix-turn-helix domain CLI14_07205 PF00027 Cyclic nucleotide-binding domain CLI14_07220 PF00403 Heavy-metal-associated domain CLI14_07230 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLI14_07230 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CLI14_07245 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLI14_07275 PF06303 MatP N-terminal domain CLI14_07275 PF17414 MatP C-terminal ribbon-helix-helix domain CLI14_07280 PF05362 Lon protease (S16) C-terminal proteolytic domain CLI14_07280 PF13654 AAA domain CLI14_07285 PF07977 FabA-like domain CLI14_07290 PF04957 Ribosome modulation factor CLI14_07310 PF02926 THUMP domain CLI14_07310 PF10672 S-adenosylmethionine-dependent methyltransferase CLI14_07310 PF01170 Putative RNA methylase family UPF0020 CLI14_07315 PF07126 Cell-division protein ZapC CLI14_07320 PF01180 Dihydroorotate dehydrogenase CLI14_07325 PF05088 Bacterial NAD-glutamate dehydrogenase CLI14_07335 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CLI14_07335 PF11940 Domain of unknown function (DUF3458) Ig-like fold CLI14_07335 PF01433 Peptidase family M1 domain CLI14_07345 PF17804 Tail specific protease N-terminal domain CLI14_07345 PF11818 C-terminal domain of tail specific protease (DUF3340) CLI14_07345 PF00595 PDZ domain CLI14_07345 PF03572 Peptidase family S41 CLI14_07355 PF13185 GAF domain CLI14_07360 PF00005 ABC transporter CLI14_07360 PF00664 ABC transporter transmembrane region CLI14_07365 PF04403 Paraquat-inducible protein A CLI14_07370 PF02470 MlaD protein CLI14_07375 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CLI14_07375 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CLI14_07375 PF01189 16S rRNA methyltransferase RsmB/F CLI14_07380 PF17783 CvfB-like winged helix domain CLI14_07380 PF13509 S1 domain CLI14_07395 PF02896 PEP-utilising enzyme, TIM barrel domain CLI14_07395 PF00391 PEP-utilising enzyme, mobile domain CLI14_07395 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLI14_07400 PF00793 DAHP synthetase I family CLI14_07405 PF04461 Protein of unknown function (DUF520) CLI14_07415 PF14824 Sirohaem biosynthesis protein central CLI14_07415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI14_07415 PF10414 Sirohaem synthase dimerisation region CLI14_07420 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI14_07425 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_07430 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_07435 PF00005 ABC transporter CLI14_07440 PF01027 Inhibitor of apoptosis-promoting Bax1 CLI14_07445 PF04358 DsrC like protein CLI14_07450 PF00708 Acylphosphatase CLI14_07460 PF04986 Putative transposase CLI14_07460 PF14319 Transposase zinc-binding domain CLI14_07490 PF06508 Queuosine biosynthesis protein QueC CLI14_07495 PF04055 Radical SAM superfamily CLI14_07515 PF00501 AMP-binding enzyme CLI14_07515 PF13193 AMP-binding enzyme C-terminal domain CLI14_07515 PF16177 Acetyl-coenzyme A synthetase N-terminus CLI14_07520 PF04303 PrpF protein CLI14_07525 PF00330 Aconitase family (aconitate hydratase) CLI14_07525 PF00694 Aconitase C-terminal domain CLI14_07530 PF00285 Citrate synthase, C-terminal domain CLI14_07560 PF01970 Tripartite tricarboxylate transporter TctA family CLI14_07565 PF00486 Transcriptional regulatory protein, C terminal CLI14_07565 PF00072 Response regulator receiver domain CLI14_07570 PF00512 His Kinase A (phospho-acceptor) domain CLI14_07570 PF00672 HAMP domain CLI14_07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_07575 PF01219 Prokaryotic diacylglycerol kinase CLI14_07580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLI14_07585 PF03466 LysR substrate binding domain CLI14_07585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_07590 PF02653 Branched-chain amino acid transport system / permease component CLI14_07595 PF00005 ABC transporter CLI14_07600 PF13407 Periplasmic binding protein domain CLI14_07615 PF02001 Protein of unknown function DUF134 CLI14_07625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLI14_07635 PF12833 Helix-turn-helix domain CLI14_07640 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI14_07640 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLI14_07640 PF02378 Phosphotransferase system, EIIC CLI14_07645 PF01238 Phosphomannose isomerase type I CLI14_07665 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CLI14_07670 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CLI14_07675 PF04223 Citrate lyase, alpha subunit (CitF) CLI14_07680 PF03328 HpcH/HpaI aldolase/citrate lyase family CLI14_07685 PF06857 Malonate decarboxylase delta subunit (MdcD) CLI14_07690 PF00072 Response regulator receiver domain CLI14_07690 PF12431 Transcriptional regulator CLI14_07695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_07695 PF17203 Single cache domain 3 CLI14_07700 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CLI14_07705 PF02436 Conserved carboxylase domain CLI14_07705 PF00682 HMGL-like CLI14_07705 PF00364 Biotin-requiring enzyme CLI14_07715 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CLI14_07720 PF08218 Citrate lyase ligase C-terminal domain CLI14_07725 PF01970 Tripartite tricarboxylate transporter TctA family CLI14_07745 PF13737 Transposase DDE domain CLI14_07755 PF03989 DNA gyrase C-terminal domain, beta-propeller CLI14_07755 PF00521 DNA gyrase/topoisomerase IV, subunit A CLI14_07765 PF00317 Ribonucleotide reductase, all-alpha domain CLI14_07765 PF03477 ATP cone domain CLI14_07765 PF02867 Ribonucleotide reductase, barrel domain CLI14_07770 PF00268 Ribonucleotide reductase, small chain CLI14_07775 PF00970 Oxidoreductase FAD-binding domain CLI14_07775 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI14_07775 PF00175 Oxidoreductase NAD-binding domain CLI14_07785 PF00994 Probable molybdopterin binding domain CLI14_07800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_07800 PF17200 Single Cache domain 2 CLI14_07800 PF00672 HAMP domain CLI14_07810 PF03435 Saccharopine dehydrogenase NADP binding domain CLI14_07810 PF16653 Saccharopine dehydrogenase C-terminal domain CLI14_07815 PF00202 Aminotransferase class-III CLI14_07825 PF06965 Na+/H+ antiporter 1 CLI14_07840 PF00005 ABC transporter CLI14_07845 PF01554 MatE CLI14_07850 PF13460 NAD(P)H-binding CLI14_07850 PF11066 Protein of unknown function (DUF2867) CLI14_07860 PF07690 Major Facilitator Superfamily CLI14_07865 PF00849 RNA pseudouridylate synthase CLI14_07865 PF01479 S4 domain CLI14_07870 PF04851 Type III restriction enzyme, res subunit CLI14_07870 PF00271 Helicase conserved C-terminal domain CLI14_07880 PF00486 Transcriptional regulatory protein, C terminal CLI14_07880 PF00072 Response regulator receiver domain CLI14_07885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_07885 PF00672 HAMP domain CLI14_07885 PF00512 His Kinase A (phospho-acceptor) domain CLI14_07905 PF00271 Helicase conserved C-terminal domain CLI14_07905 PF00270 DEAD/DEAH box helicase CLI14_07920 PF13737 Transposase DDE domain CLI14_07935 PF06945 Protein of unknown function (DUF1289) CLI14_07945 PF13416 Bacterial extracellular solute-binding protein CLI14_07950 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_07955 PF00005 ABC transporter CLI14_07960 PF01066 CDP-alcohol phosphatidyltransferase CLI14_07970 PF13737 Transposase DDE domain CLI14_07985 PF00849 RNA pseudouridylate synthase CLI14_07990 PF00209 Sodium:neurotransmitter symporter family CLI14_07995 PF13396 Phospholipase_D-nuclease N-terminal CLI14_07995 PF13091 PLD-like domain CLI14_08000 PF01053 Cys/Met metabolism PLP-dependent enzyme CLI14_08005 PF03352 Methyladenine glycosylase CLI14_08005 PF13673 Acetyltransferase (GNAT) domain CLI14_08005 PF00117 Glutamine amidotransferase class-I CLI14_08005 PF13302 Acetyltransferase (GNAT) domain CLI14_08005 PF00958 GMP synthase C terminal domain CLI14_08015 PF06667 Phage shock protein B CLI14_08020 PF04012 PspA/IM30 family CLI14_08025 PF00158 Sigma-54 interaction domain CLI14_08025 PF02954 Bacterial regulatory protein, Fis family CLI14_08030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI14_08035 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_08040 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_08040 PF12911 N-terminal TM domain of oligopeptide transport permease C CLI14_08045 PF00005 ABC transporter CLI14_08045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI14_08050 PF00005 ABC transporter CLI14_08065 PF01368 DHH family CLI14_08065 PF02833 DHHA2 domain CLI14_08075 PF00384 Molybdopterin oxidoreductase CLI14_08075 PF18364 Molybdopterin oxidoreductase N-terminal domain CLI14_08075 PF01568 Molydopterin dinucleotide binding domain CLI14_08080 PF03264 NapC/NirT cytochrome c family, N-terminal region CLI14_08085 PF06796 Periplasmic nitrate reductase protein NapE CLI14_08090 PF01226 Formate/nitrite transporter CLI14_08105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_08105 PF03466 LysR substrate binding domain CLI14_08115 PF02698 DUF218 domain CLI14_08120 PF00265 Thymidine kinase CLI14_08125 PF00152 tRNA synthetases class II (D, K and N) CLI14_08125 PF01336 OB-fold nucleic acid binding domain CLI14_08125 PF02938 GAD domain CLI14_08130 PF01904 Protein of unknown function DUF72 CLI14_08135 PF05925 Enterobacterial virulence protein IpgD CLI14_08140 PF13649 Methyltransferase domain CLI14_08150 PF18030 RimK PreATP-grasp domain CLI14_08150 PF08443 RimK-like ATP-grasp domain CLI14_08165 PF04310 MukB N-terminal CLI14_08165 PF16330 MukB hinge domain CLI14_08170 PF04288 MukE-like family CLI14_08175 PF03882 MukF winged-helix domain CLI14_08175 PF17193 MukF C-terminal domain CLI14_08175 PF17192 MukF middle domain CLI14_08185 PF02698 DUF218 domain CLI14_08190 PF00486 Transcriptional regulatory protein, C terminal CLI14_08190 PF00072 Response regulator receiver domain CLI14_08195 PF02613 Nitrate reductase delta subunit CLI14_08200 PF00356 Bacterial regulatory proteins, lacI family CLI14_08205 PF04994 TfoX C-terminal domain CLI14_08205 PF04993 TfoX N-terminal domain CLI14_08225 PF08323 Starch synthase catalytic domain CLI14_08225 PF00534 Glycosyl transferases group 1 CLI14_08230 PF00483 Nucleotidyl transferase CLI14_08235 PF01751 Toprim domain CLI14_08235 PF01131 DNA topoisomerase CLI14_08235 PF08272 Topoisomerase I zinc-ribbon-like CLI14_08235 PF01396 Topoisomerase DNA binding C4 zinc finger CLI14_08240 PF10692 Protein of unknown function (DUF2498) CLI14_08245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLI14_08250 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CLI14_08255 PF04377 Arginine-tRNA-protein transferase, C terminus CLI14_08255 PF04376 Arginine-tRNA-protein transferase, N terminus CLI14_08260 PF01176 Translation initiation factor 1A / IF-1 CLI14_08265 PF02861 Clp amino terminal domain, pathogenicity island component CLI14_08265 PF00004 ATPase family associated with various cellular activities (AAA) CLI14_08265 PF10431 C-terminal, D2-small domain, of ClpB protein CLI14_08265 PF17871 AAA lid domain CLI14_08265 PF07724 AAA domain (Cdc48 subfamily) CLI14_08270 PF02617 ATP-dependent Clp protease adaptor protein ClpS CLI14_08275 PF00313 'Cold-shock' DNA-binding domain CLI14_08280 PF03971 Monomeric isocitrate dehydrogenase CLI14_08285 PF00849 RNA pseudouridylate synthase CLI14_08290 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLI14_08290 PF01502 Phosphoribosyl-AMP cyclohydrolase CLI14_08295 PF00977 Histidine biosynthesis protein CLI14_08300 PF00977 Histidine biosynthesis protein CLI14_08305 PF00117 Glutamine amidotransferase class-I CLI14_08310 PF00475 Imidazoleglycerol-phosphate dehydratase CLI14_08310 PF08645 Polynucleotide kinase 3 phosphatase CLI14_08315 PF00155 Aminotransferase class I and II CLI14_08320 PF00815 Histidinol dehydrogenase CLI14_08325 PF08029 HisG, C-terminal domain CLI14_08325 PF01634 ATP phosphoribosyltransferase CLI14_08330 PF03553 Na+/H+ antiporter family CLI14_08335 PF00816 H-NS histone family CLI14_08340 PF00294 pfkB family carbohydrate kinase CLI14_08355 PF04356 Protein of unknown function (DUF489) CLI14_08360 PF08328 Adenylosuccinate lyase C-terminal CLI14_08360 PF00206 Lyase CLI14_08365 PF00266 Aminotransferase class-V CLI14_08375 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI14_08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_08375 PF00512 His Kinase A (phospho-acceptor) domain CLI14_08390 PF04994 TfoX C-terminal domain CLI14_08390 PF04993 TfoX N-terminal domain CLI14_08400 PF03956 Lysine exporter LysO CLI14_08410 PF00282 Pyridoxal-dependent decarboxylase conserved domain CLI14_08415 PF01418 Helix-turn-helix domain, rpiR family CLI14_08415 PF01380 SIS domain CLI14_08420 PF00465 Iron-containing alcohol dehydrogenase CLI14_08425 PF00462 Glutaredoxin CLI14_08430 PF06826 Predicted Permease Membrane Region CLI14_08430 PF02080 TrkA-C domain CLI14_08435 PF01259 SAICAR synthetase CLI14_08445 PF03949 Malic enzyme, NAD binding domain CLI14_08445 PF00390 Malic enzyme, N-terminal domain CLI14_08455 PF02698 DUF218 domain CLI14_08460 PF00266 Aminotransferase class-V CLI14_08470 PF00990 Diguanylate cyclase, GGDEF domain CLI14_08470 PF00072 Response regulator receiver domain CLI14_08475 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_08480 PF00005 ABC transporter CLI14_08480 PF00664 ABC transporter transmembrane region CLI14_08485 PF00664 ABC transporter transmembrane region CLI14_08485 PF00005 ABC transporter CLI14_08500 PF08281 Sigma-70, region 4 CLI14_08500 PF04542 Sigma-70 region 2 CLI14_08510 PF00563 EAL domain CLI14_08510 PF03707 Bacterial signalling protein N terminal repeat CLI14_08510 PF00990 Diguanylate cyclase, GGDEF domain CLI14_08515 PF00849 RNA pseudouridylate synthase CLI14_08515 PF01479 S4 domain CLI14_08520 PF01300 Telomere recombination CLI14_08525 PF02811 PHP domain CLI14_08530 PF08056 Tryptophan operon leader peptide CLI14_08535 PF04715 Anthranilate synthase component I, N terminal region CLI14_08535 PF00425 chorismate binding enzyme CLI14_08540 PF00117 Glutamine amidotransferase class-I CLI14_08545 PF02885 Glycosyl transferase family, helical bundle domain CLI14_08545 PF00591 Glycosyl transferase family, a/b domain CLI14_08550 PF00218 Indole-3-glycerol phosphate synthase CLI14_08550 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CLI14_08555 PF00291 Pyridoxal-phosphate dependent enzyme CLI14_08570 PF00375 Sodium:dicarboxylate symporter family CLI14_08580 PF04279 Intracellular septation protein A CLI14_08585 PF03061 Thioesterase superfamily CLI14_08590 PF03795 YCII-related domain CLI14_08600 PF01717 Cobalamin-independent synthase, Catalytic domain CLI14_08600 PF08267 Cobalamin-independent synthase, N-terminal domain CLI14_08605 PF03466 LysR substrate binding domain CLI14_08605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_08620 PF00990 Diguanylate cyclase, GGDEF domain CLI14_08620 PF01590 GAF domain CLI14_08620 PF00563 EAL domain CLI14_08620 PF00989 PAS fold CLI14_08625 PF00089 Trypsin CLI14_08630 PF11842 Domain of unknown function (DUF3362) CLI14_08630 PF04055 Radical SAM superfamily CLI14_08630 PF08497 Radical SAM N-terminal CLI14_08640 PF16036 Chalcone isomerase-like CLI14_08665 PF00106 short chain dehydrogenase CLI14_08675 PF01435 Peptidase family M48 CLI14_08685 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CLI14_08685 PF09397 Ftsk gamma domain CLI14_08685 PF01580 FtsK/SpoIIIE family CLI14_08685 PF17854 FtsK alpha domain CLI14_08690 PF01037 Lrp/AsnC ligand binding domain CLI14_08695 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CLI14_08695 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CLI14_08705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_08705 PF03466 LysR substrate binding domain CLI14_08715 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLI14_08720 PF18073 Rubredoxin metal binding domain CLI14_08725 PF06305 Lipopolysaccharide assembly protein A domain CLI14_08735 PF00575 S1 RNA binding domain CLI14_08740 PF02224 Cytidylate kinase CLI14_08750 PF13145 PPIC-type PPIASE domain CLI14_08755 PF00216 Bacterial DNA-binding protein CLI14_08760 PF00004 ATPase family associated with various cellular activities (AAA) CLI14_08760 PF05362 Lon protease (S16) C-terminal proteolytic domain CLI14_08760 PF02190 ATP-dependent protease La (LON) substrate-binding domain CLI14_08765 PF06689 ClpX C4-type zinc finger CLI14_08765 PF07724 AAA domain (Cdc48 subfamily) CLI14_08765 PF10431 C-terminal, D2-small domain, of ClpB protein CLI14_08770 PF00574 Clp protease CLI14_08775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLI14_08775 PF05698 Bacterial trigger factor protein (TF) C-terminus CLI14_08775 PF05697 Bacterial trigger factor protein (TF) CLI14_08785 PF02743 Cache domain CLI14_08785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_08785 PF00512 His Kinase A (phospho-acceptor) domain CLI14_08790 PF00072 Response regulator receiver domain CLI14_08790 PF00158 Sigma-54 interaction domain CLI14_08790 PF02954 Bacterial regulatory protein, Fis family CLI14_08795 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CLI14_08800 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CLI14_08805 PF03480 Bacterial extracellular solute-binding protein, family 7 CLI14_08815 PF01547 Bacterial extracellular solute-binding protein CLI14_08820 PF00512 His Kinase A (phospho-acceptor) domain CLI14_08820 PF00672 HAMP domain CLI14_08820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_08825 PF00486 Transcriptional regulatory protein, C terminal CLI14_08825 PF00072 Response regulator receiver domain CLI14_08830 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CLI14_08835 PF03313 Serine dehydratase alpha chain CLI14_08835 PF03315 Serine dehydratase beta chain CLI14_08845 PF00271 Helicase conserved C-terminal domain CLI14_08845 PF00270 DEAD/DEAH box helicase CLI14_08850 PF16657 Maltogenic Amylase, C-terminal domain CLI14_08850 PF00128 Alpha amylase, catalytic domain CLI14_08850 PF02903 Alpha amylase, N-terminal ig-like domain CLI14_08855 PF02028 BCCT, betaine/carnitine/choline family transporter CLI14_08860 PF02607 B12 binding domain CLI14_08860 PF02310 B12 binding domain CLI14_08860 PF02574 Homocysteine S-methyltransferase CLI14_08860 PF00809 Pterin binding enzyme CLI14_08860 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLI14_08870 PF09905 DNA-binding protein VF530 CLI14_08885 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLI14_08885 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLI14_08890 PF00704 Glycosyl hydrolases family 18 CLI14_08890 PF06483 Chitinase C CLI14_08895 PF07662 Na+ dependent nucleoside transporter C-terminus CLI14_08895 PF07670 Nucleoside recognition CLI14_08895 PF01773 Na+ dependent nucleoside transporter N-terminus CLI14_08900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_08900 PF03466 LysR substrate binding domain CLI14_08905 PF13406 Transglycosylase SLT domain CLI14_08910 PF05166 YcgL domain CLI14_08915 PF05209 Septum formation inhibitor MinC, N-terminal domain CLI14_08915 PF03775 Septum formation inhibitor MinC, C-terminal domain CLI14_08920 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLI14_08925 PF03776 Septum formation topological specificity factor MinE CLI14_08930 PF01612 3'-5' exonuclease CLI14_08930 PF00570 HRDC domain CLI14_08935 PF13193 AMP-binding enzyme C-terminal domain CLI14_08935 PF00501 AMP-binding enzyme CLI14_08940 PF00561 alpha/beta hydrolase fold CLI14_08955 PF00814 Glycoprotease family CLI14_08960 PF04851 Type III restriction enzyme, res subunit CLI14_08960 PF13307 Helicase C-terminal domain CLI14_08970 PF01842 ACT domain CLI14_08970 PF00551 Formyl transferase CLI14_08975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLI14_08975 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_08980 PF01343 Peptidase family S49 CLI14_08985 PF00710 Asparaginase, N-terminal CLI14_08985 PF17763 Glutaminase/Asparaginase C-terminal domain CLI14_08990 PF07023 Protein of unknown function (DUF1315) CLI14_09000 PF01641 SelR domain CLI14_09005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLI14_09005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLI14_09010 PF01263 Aldose 1-epimerase CLI14_09015 PF13847 Methyltransferase domain CLI14_09035 PF03692 Putative zinc- or iron-chelating domain CLI14_09045 PF02575 YbaB/EbfC DNA-binding family CLI14_09050 PF12170 DNA polymerase III tau subunit V interacting with alpha CLI14_09050 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CLI14_09050 PF12169 DNA polymerase III subunits gamma and tau domain III CLI14_09055 PF00156 Phosphoribosyl transferase domain CLI14_09060 PF04304 Protein of unknown function (DUF454) CLI14_09070 PF00072 Response regulator receiver domain CLI14_09075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_09075 PF03466 LysR substrate binding domain CLI14_09080 PF00881 Nitroreductase family CLI14_09085 PF00378 Enoyl-CoA hydratase/isomerase CLI14_09085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLI14_09085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLI14_09090 PF02803 Thiolase, C-terminal domain CLI14_09090 PF00108 Thiolase, N-terminal domain CLI14_09105 PF08281 Sigma-70, region 4 CLI14_09105 PF04542 Sigma-70 region 2 CLI14_09115 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CLI14_09120 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CLI14_09125 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CLI14_09125 PF12557 Cob(I)alamin adenosyltransferase N terminal CLI14_09130 PF05170 AsmA family CLI14_09135 PF00485 Phosphoribulokinase / Uridine kinase family CLI14_09140 PF10609 NUBPL iron-transfer P-loop NTPase CLI14_09145 PF01588 Putative tRNA binding domain CLI14_09145 PF09334 tRNA synthetases class I (M) CLI14_09155 PF01048 Phosphorylase superfamily CLI14_09160 PF00403 Heavy-metal-associated domain CLI14_09165 PF03061 Thioesterase superfamily CLI14_09165 PF00571 CBS domain CLI14_09165 PF07085 DRTGG domain CLI14_09165 PF00392 Bacterial regulatory proteins, gntR family CLI14_09170 PF07694 5TMR of 5TMR-LYT CLI14_09170 PF00990 Diguanylate cyclase, GGDEF domain CLI14_09175 PF02391 MoaE protein CLI14_09180 PF02597 ThiS family CLI14_09185 PF01967 MoaC family CLI14_09190 PF00994 Probable molybdopterin binding domain CLI14_09195 PF04055 Radical SAM superfamily CLI14_09195 PF06463 Molybdenum Cofactor Synthesis C CLI14_09200 PF01933 Uncharacterised protein family UPF0052 CLI14_09205 PF01627 Hpt domain CLI14_09210 PF02954 Bacterial regulatory protein, Fis family CLI14_09210 PF00158 Sigma-54 interaction domain CLI14_09210 PF00072 Response regulator receiver domain CLI14_09215 PF17757 UvrB interaction domain CLI14_09215 PF12344 Ultra-violet resistance protein B CLI14_09215 PF02151 UvrB/uvrC motif CLI14_09215 PF04851 Type III restriction enzyme, res subunit CLI14_09215 PF00271 Helicase conserved C-terminal domain CLI14_09225 PF00759 Glycosyl hydrolase family 9 CLI14_09225 PF02927 Cellulase N-terminal ig-like domain CLI14_09225 PF02018 Carbohydrate binding domain CLI14_09230 PF00793 DAHP synthetase I family CLI14_09240 PF00425 chorismate binding enzyme CLI14_09245 PF00501 AMP-binding enzyme CLI14_09245 PF13193 AMP-binding enzyme C-terminal domain CLI14_09250 PF00857 Isochorismatase family CLI14_09250 PF00550 Phosphopantetheine attachment site CLI14_09255 PF05977 Transmembrane secretion effector CLI14_09265 PF14319 Transposase zinc-binding domain CLI14_09265 PF04986 Putative transposase CLI14_09280 PF00756 Putative esterase CLI14_09280 PF11806 Domain of unknown function (DUF3327) CLI14_09285 PF07715 TonB-dependent Receptor Plug Domain CLI14_09290 PF01648 4'-phosphopantetheinyl transferase superfamily CLI14_09290 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CLI14_09295 PF02508 Rnf-Nqr subunit, membrane protein CLI14_09300 PF04060 Putative Fe-S cluster CLI14_09305 PF10531 SLBB domain CLI14_09305 PF12838 4Fe-4S dicluster domain CLI14_09305 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CLI14_09305 PF13375 RnfC Barrel sandwich hybrid domain CLI14_09310 PF03116 NQR2, RnfD, RnfE family CLI14_09325 PF00633 Helix-hairpin-helix motif CLI14_09325 PF00730 HhH-GPD superfamily base excision DNA repair protein CLI14_09325 PF10576 Iron-sulfur binding domain of endonuclease III CLI14_09330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLI14_09335 PF18393 MotY N-terminal domain CLI14_09335 PF00691 OmpA family CLI14_09340 PF00929 Exonuclease CLI14_09345 PF03553 Na+/H+ antiporter family CLI14_09345 PF13726 Na+-H+ antiporter family CLI14_09350 PF00156 Phosphoribosyl transferase domain CLI14_09355 PF02674 Colicin V production protein CLI14_09360 PF05036 Sporulation related domain CLI14_09365 PF08245 Mur ligase middle domain CLI14_09365 PF02875 Mur ligase family, glutamate ligase domain CLI14_09370 PF17848 Acetyl-coA carboxylase zinc finger domain CLI14_09370 PF01039 Carboxyl transferase domain CLI14_09385 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLI14_09385 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CLI14_09390 PF02378 Phosphotransferase system, EIIC CLI14_09390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI14_09390 PF00367 phosphotransferase system, EIIB CLI14_09395 PF01979 Amidohydrolase family CLI14_09400 PF01047 MarR family CLI14_09400 PF00480 ROK family CLI14_09405 PF02254 TrkA-N domain CLI14_09405 PF00999 Sodium/hydrogen exchanger family CLI14_09410 PF00733 Asparagine synthase CLI14_09410 PF13537 Glutamine amidotransferase domain CLI14_09415 PF02357 Transcription termination factor nusG CLI14_09420 PF00854 POT family CLI14_09425 PF00762 Ferrochelatase CLI14_09430 PF05191 Adenylate kinase, active site lid CLI14_09435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_09435 PF00183 Hsp90 protein CLI14_09440 PF00486 Transcriptional regulatory protein, C terminal CLI14_09445 PF17323 Trans-membrane regulatory protein ToxS CLI14_09455 PF12850 Calcineurin-like phosphoesterase superfamily domain CLI14_09460 PF08338 Domain of unknown function (DUF1731) CLI14_09460 PF01370 NAD dependent epimerase/dehydratase family CLI14_09465 PF00085 Thioredoxin CLI14_09470 PF16200 C-terminal region of band_7 CLI14_09470 PF01145 SPFH domain / Band 7 family CLI14_09480 PF13411 MerR HTH family regulatory protein CLI14_09485 PF14319 Transposase zinc-binding domain CLI14_09485 PF04986 Putative transposase CLI14_09490 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CLI14_09495 PF13609 Gram-negative porin CLI14_09505 PF04354 ZipA, C-terminal FtsZ-binding domain CLI14_09515 PF00291 Pyridoxal-phosphate dependent enzyme CLI14_09520 PF00381 PTS HPr component phosphorylation site CLI14_09525 PF00391 PEP-utilising enzyme, mobile domain CLI14_09525 PF02896 PEP-utilising enzyme, TIM barrel domain CLI14_09525 PF05524 PEP-utilising enzyme, N-terminal CLI14_09530 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLI14_09535 PF01494 FAD binding domain CLI14_09540 PF00919 Uncharacterized protein family UPF0004 CLI14_09540 PF04055 Radical SAM superfamily CLI14_09540 PF01938 TRAM domain CLI14_09545 PF02562 PhoH-like protein CLI14_09555 PF03471 Transporter associated domain CLI14_09555 PF00571 CBS domain CLI14_09560 PF00795 Carbon-nitrogen hydrolase CLI14_09565 PF07295 Zinc-ribbon containing domain CLI14_09570 PF13603 Leucyl-tRNA synthetase, Domain 2 CLI14_09570 PF08264 Anticodon-binding domain of tRNA CLI14_09570 PF00133 tRNA synthetases class I (I, L, M and V) CLI14_09575 PF04390 Lipopolysaccharide-assembly CLI14_09580 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CLI14_09580 PF06144 DNA polymerase III, delta subunit CLI14_09590 PF02590 Predicted SPOUT methyltransferase CLI14_09595 PF03717 Penicillin-binding Protein dimerisation domain CLI14_09595 PF00905 Penicillin binding protein transpeptidase domain CLI14_09600 PF01098 Cell cycle protein CLI14_09605 PF03330 Lytic transglycolase CLI14_09605 PF05036 Sporulation related domain CLI14_09610 PF07943 Penicillin-binding protein 5, C-terminal domain CLI14_09610 PF00768 D-alanyl-D-alanine carboxypeptidase CLI14_09615 PF04359 Protein of unknown function (DUF493) CLI14_09620 PF03099 Biotin/lipoate A/B protein ligase family CLI14_09635 PF00464 Serine hydroxymethyltransferase CLI14_09645 PF02397 Bacterial sugar transferase CLI14_09655 PF10531 SLBB domain CLI14_09655 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CLI14_09655 PF02563 Polysaccharide biosynthesis/export protein CLI14_09660 PF13614 AAA domain CLI14_09685 PF12561 ToxR activated gene A lipoprotein domain CLI14_09685 PF17945 Beta/Gamma crystallin CLI14_09690 PF03808 Glycosyl transferase WecB/TagA/CpsF family CLI14_09700 PF00132 Bacterial transferase hexapeptide (six repeats) CLI14_09700 PF06426 Serine acetyltransferase, N-terminal CLI14_09735 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLI14_09735 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLI14_09735 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLI14_09740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLI14_09740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLI14_09740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLI14_09745 PF02350 UDP-N-acetylglucosamine 2-epimerase CLI14_09750 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLI14_09755 PF00873 AcrB/AcrD/AcrF family CLI14_09760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLI14_09795 PF00672 HAMP domain CLI14_09795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_09795 PF00512 His Kinase A (phospho-acceptor) domain CLI14_09800 PF00486 Transcriptional regulatory protein, C terminal CLI14_09800 PF00072 Response regulator receiver domain CLI14_09805 PF16657 Maltogenic Amylase, C-terminal domain CLI14_09805 PF00128 Alpha amylase, catalytic domain CLI14_09810 PF00367 phosphotransferase system, EIIB CLI14_09810 PF02378 Phosphotransferase system, EIIC CLI14_09815 PF00356 Bacterial regulatory proteins, lacI family CLI14_09830 PF00005 ABC transporter CLI14_09830 PF09383 NIL domain CLI14_09835 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_09840 PF03180 NLPA lipoprotein CLI14_09845 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) CLI14_09850 PF07348 Syd protein (SUKH-2) CLI14_09855 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CLI14_09855 PF14489 QueF-like protein CLI14_09865 PF00990 Diguanylate cyclase, GGDEF domain CLI14_09870 PF03641 Possible lysine decarboxylase CLI14_09870 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CLI14_09870 PF11892 Domain of unknown function (DUF3412) CLI14_09875 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLI14_09875 PF01367 5'-3' exonuclease, C-terminal SAM fold CLI14_09885 PF04241 Protein of unknown function (DUF423) CLI14_09890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_09890 PF03466 LysR substrate binding domain CLI14_09895 PF02568 Thiamine biosynthesis protein (ThiI) CLI14_09895 PF02926 THUMP domain CLI14_09900 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLI14_09900 PF00691 OmpA family CLI14_09905 PF01618 MotA/TolQ/ExbB proton channel family CLI14_09910 PF02609 Exonuclease VII small subunit CLI14_09915 PF00348 Polyprenyl synthetase CLI14_09920 PF02780 Transketolase, C-terminal domain CLI14_09920 PF02779 Transketolase, pyrimidine binding domain CLI14_09920 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLI14_09925 PF00849 RNA pseudouridylate synthase CLI14_09930 PF04287 tRNA pseudouridine synthase C CLI14_09955 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CLI14_09960 PF00444 Ribosomal protein L36 CLI14_09965 PF01197 Ribosomal protein L31 CLI14_09970 PF01980 tRNA-methyltransferase O CLI14_09970 PF18389 TrmO C-terminal domain CLI14_09975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI14_09975 PF03129 Anticodon binding domain CLI14_09975 PF04073 Aminoacyl-tRNA editing domain CLI14_09980 PF04391 Protein of unknown function (DUF533) CLI14_09985 PF06786 Uncharacterised protein family (UPF0253) CLI14_10000 PF02769 AIR synthase related protein, C-terminal domain CLI14_10000 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CLI14_10000 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLI14_10010 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI14_10010 PF01464 Transglycosylase SLT domain CLI14_10015 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLI14_10020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_10020 PF03466 LysR substrate binding domain CLI14_10025 PF00107 Zinc-binding dehydrogenase CLI14_10025 PF08240 Alcohol dehydrogenase GroES-like domain CLI14_10030 PF00756 Putative esterase CLI14_10035 PF03806 AbgT putative transporter family CLI14_10060 PF00114 Pilin (bacterial filament) CLI14_10060 PF07963 Prokaryotic N-terminal methylation motif CLI14_10065 PF00226 DnaJ domain CLI14_10065 PF01556 DnaJ C terminal domain CLI14_10065 PF00684 DnaJ central domain CLI14_10070 PF00012 Hsp70 protein CLI14_10075 PF01025 GrpE CLI14_10080 PF01513 ATP-NAD kinase CLI14_10085 PF13737 Transposase DDE domain CLI14_10090 PF01212 Beta-eliminating lyase CLI14_10095 PF02463 RecF/RecN/SMC N terminal domain CLI14_10100 PF04355 SmpA / OmlA family CLI14_10105 PF03658 RnfH family Ubiquitin CLI14_10110 PF03364 Polyketide cyclase / dehydrase and lipid transport CLI14_10115 PF01668 SmpB protein CLI14_10125 PF00589 Phage integrase family CLI14_10125 PF13356 Arm DNA-binding domain CLI14_10130 PF12161 HsdM N-terminal domain CLI14_10130 PF02384 N-6 DNA Methylase CLI14_10145 PF01420 Type I restriction modification DNA specificity domain CLI14_10150 PF08463 EcoEI R protein C-terminal CLI14_10150 PF04851 Type III restriction enzyme, res subunit CLI14_10150 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLI14_10150 PF00271 Helicase conserved C-terminal domain CLI14_10155 PF04471 Restriction endonuclease CLI14_10155 PF14338 Mrr N-terminal domain CLI14_10170 PF04002 RadC-like JAB domain CLI14_10280 PF13737 Transposase DDE domain CLI14_10285 PF02028 BCCT, betaine/carnitine/choline family transporter CLI14_10290 PF03466 LysR substrate binding domain CLI14_10290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_10295 PF01266 FAD dependent oxidoreductase CLI14_10300 PF01235 Sodium:alanine symporter family CLI14_10305 PF01184 GPR1/FUN34/yaaH family CLI14_10310 PF06483 Chitinase C CLI14_10310 PF00704 Glycosyl hydrolases family 18 CLI14_10315 PF08543 Phosphomethylpyrimidine kinase CLI14_10320 PF02540 NAD synthase CLI14_10320 PF00958 GMP synthase C terminal domain CLI14_10320 PF00117 Glutamine amidotransferase class-I CLI14_10325 PF00571 CBS domain CLI14_10325 PF00478 IMP dehydrogenase / GMP reductase domain CLI14_10330 PF13742 OB-fold nucleic acid binding domain CLI14_10330 PF02601 Exonuclease VII, large subunit CLI14_10340 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLI14_10340 PF01926 50S ribosome-binding GTPase CLI14_10345 PF13360 PQQ-like domain CLI14_10350 PF09976 Tetratricopeptide repeat-like domain CLI14_10355 PF13393 Histidyl-tRNA synthetase CLI14_10355 PF03129 Anticodon binding domain CLI14_10360 PF04551 GcpE protein CLI14_10365 PF13464 Domain of unknown function (DUF4115) CLI14_10370 PF04055 Radical SAM superfamily CLI14_10375 PF00334 Nucleoside diphosphate kinase CLI14_10380 PF12404 Peptidase CLI14_10380 PF00883 Cytosol aminopeptidase family, catalytic domain CLI14_10385 PF04384 Iron-sulphur cluster assembly CLI14_10390 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI14_10395 PF00012 Hsp70 protein CLI14_10400 PF07743 HSCB C-terminal oligomerisation domain CLI14_10400 PF00226 DnaJ domain CLI14_10405 PF01521 Iron-sulphur cluster biosynthesis CLI14_10410 PF01592 NifU-like N terminal domain CLI14_10415 PF00266 Aminotransferase class-V CLI14_10420 PF02082 Transcriptional regulator CLI14_10425 PF00588 SpoU rRNA Methylase family CLI14_10430 PF00459 Inositol monophosphatase family CLI14_10435 PF07549 SecD/SecF GG Motif CLI14_10435 PF02355 Protein export membrane protein CLI14_10440 PF02355 Protein export membrane protein CLI14_10440 PF13721 SecD export protein N-terminal TM region CLI14_10440 PF07549 SecD/SecF GG Motif CLI14_10445 PF02699 Preprotein translocase subunit CLI14_10450 PF01702 Queuine tRNA-ribosyltransferase CLI14_10455 PF02547 Queuosine biosynthesis protein CLI14_10460 PF00571 CBS domain CLI14_10465 PF00463 Isocitrate lyase family CLI14_10470 PF01274 Malate synthase CLI14_10475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_10475 PF03466 LysR substrate binding domain CLI14_10480 PF10417 C-terminal domain of 1-Cys peroxiredoxin CLI14_10480 PF00578 AhpC/TSA family CLI14_10485 PF03932 CutC family CLI14_10490 PF01895 PhoU domain CLI14_10495 PF00005 ABC transporter CLI14_10500 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_10505 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_10510 PF13090 Polyphosphate kinase C-terminal domain 2 CLI14_10510 PF02503 Polyphosphate kinase middle domain CLI14_10510 PF13089 Polyphosphate kinase N-terminal domain CLI14_10510 PF17941 Polyphosphate kinase C-terminal domain 1 CLI14_10515 PF02541 Ppx/GppA phosphatase family CLI14_10520 PF12849 PBP superfamily domain CLI14_10525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_10525 PF00512 His Kinase A (phospho-acceptor) domain CLI14_10525 PF00989 PAS fold CLI14_10525 PF11808 Phosphate regulon sensor protein PhoR CLI14_10530 PF00072 Response regulator receiver domain CLI14_10530 PF00486 Transcriptional regulatory protein, C terminal CLI14_10535 PF04381 Putative exonuclease, RdgC CLI14_10545 PF00037 4Fe-4S binding domain CLI14_10550 PF00881 Nitroreductase family CLI14_10590 PF10431 C-terminal, D2-small domain, of ClpB protein CLI14_10590 PF02861 Clp amino terminal domain, pathogenicity island component CLI14_10590 PF17871 AAA lid domain CLI14_10590 PF07724 AAA domain (Cdc48 subfamily) CLI14_10590 PF00004 ATPase family associated with various cellular activities (AAA) CLI14_10605 PF13525 Outer membrane lipoprotein CLI14_10610 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLI14_10615 PF00800 Prephenate dehydratase CLI14_10615 PF01817 Chorismate mutase type II CLI14_10620 PF13416 Bacterial extracellular solute-binding protein CLI14_10625 PF00563 EAL domain CLI14_10625 PF00990 Diguanylate cyclase, GGDEF domain CLI14_10630 PF01931 Protein of unknown function DUF84 CLI14_10640 PF01464 Transglycosylase SLT domain CLI14_10640 PF14718 Soluble lytic murein transglycosylase L domain CLI14_10645 PF00005 ABC transporter CLI14_10645 PF12848 ABC transporter CLI14_10650 PF07238 PilZ domain CLI14_10655 PF01817 Chorismate mutase type II CLI14_10655 PF02153 Prephenate dehydrogenase CLI14_10660 PF00793 DAHP synthetase I family CLI14_10665 PF06580 Histidine kinase CLI14_10665 PF07694 5TMR of 5TMR-LYT CLI14_10670 PF00072 Response regulator receiver domain CLI14_10670 PF04397 LytTr DNA-binding domain CLI14_10675 PF00933 Glycosyl hydrolase family 3 N terminal domain CLI14_10680 PF03702 Anhydro-N-acetylmuramic acid kinase CLI14_10685 PF13580 SIS domain CLI14_10700 PF02554 Carbon starvation protein CstA CLI14_10705 PF02401 LytB protein CLI14_10710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLI14_10715 PF01252 Signal peptidase (SPase) II CLI14_10720 PF08264 Anticodon-binding domain of tRNA CLI14_10720 PF00133 tRNA synthetases class I (I, L, M and V) CLI14_10720 PF06827 Zinc finger found in FPG and IleRS CLI14_10725 PF06574 FAD synthetase CLI14_10725 PF01687 Riboflavin kinase CLI14_10730 PF03023 Lipid II flippase MurJ CLI14_10735 PF01649 Ribosomal protein S20 CLI14_10740 PF01022 Bacterial regulatory protein, arsR family CLI14_10745 PF03466 LysR substrate binding domain CLI14_10745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_10750 PF02690 Na+/Pi-cotransporter CLI14_10760 PF00303 Thymidylate synthase CLI14_10790 PF13005 zinc-finger binding domain of transposase IS66 CLI14_10790 PF03050 Transposase IS66 family CLI14_10790 PF13007 Transposase C of IS166 homeodomain CLI14_10790 PF13817 IS66 C-terminal element CLI14_10830 PF07804 HipA-like C-terminal domain CLI14_10830 PF13657 HipA N-terminal domain CLI14_10840 PF01381 Helix-turn-helix CLI14_10845 PF07411 Domain of unknown function (DUF1508) CLI14_10865 PF13005 zinc-finger binding domain of transposase IS66 CLI14_10865 PF13817 IS66 C-terminal element CLI14_10865 PF03050 Transposase IS66 family CLI14_10865 PF13007 Transposase C of IS166 homeodomain CLI14_10875 PF00884 Sulfatase CLI14_10875 PF08019 Phosphoethanolamine transferase EptA/EptB CLI14_10880 PF01219 Prokaryotic diacylglycerol kinase CLI14_10905 PF00303 Thymidylate synthase CLI14_10910 PF01790 Prolipoprotein diacylglyceryl transferase CLI14_10915 PF01925 Sulfite exporter TauE/SafE CLI14_10920 PF01590 GAF domain CLI14_10920 PF05524 PEP-utilising enzyme, N-terminal CLI14_10920 PF00391 PEP-utilising enzyme, mobile domain CLI14_10920 PF02896 PEP-utilising enzyme, TIM barrel domain CLI14_10925 PF00293 NUDIX domain CLI14_10930 PF02976 DNA mismatch repair enzyme MutH CLI14_10935 PF00248 Aldo/keto reductase family CLI14_10945 PF00072 Response regulator receiver domain CLI14_10945 PF00158 Sigma-54 interaction domain CLI14_10945 PF02954 Bacterial regulatory protein, Fis family CLI14_10950 PF01336 OB-fold nucleic acid binding domain CLI14_10950 PF00152 tRNA synthetases class II (D, K and N) CLI14_10960 PF05525 Branched-chain amino acid transport protein CLI14_10965 PF05175 Methyltransferase small domain CLI14_10970 PF00270 DEAD/DEAH box helicase CLI14_10970 PF00271 Helicase conserved C-terminal domain CLI14_10975 PF00009 Elongation factor Tu GTP binding domain CLI14_10975 PF16658 Class II release factor RF3, C-terminal domain CLI14_10975 PF03144 Elongation factor Tu domain 2 CLI14_10980 PF00990 Diguanylate cyclase, GGDEF domain CLI14_10980 PF03707 Bacterial signalling protein N terminal repeat CLI14_10980 PF00563 EAL domain CLI14_10985 PF00583 Acetyltransferase (GNAT) family CLI14_10995 PF13508 Acetyltransferase (GNAT) domain CLI14_11005 PF03707 Bacterial signalling protein N terminal repeat CLI14_11005 PF00563 EAL domain CLI14_11005 PF00990 Diguanylate cyclase, GGDEF domain CLI14_11025 PF01047 MarR family CLI14_11030 PF07719 Tetratricopeptide repeat CLI14_11030 PF13181 Tetratricopeptide repeat CLI14_11035 PF01138 3' exoribonuclease family, domain 1 CLI14_11035 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLI14_11035 PF00575 S1 RNA binding domain CLI14_11035 PF00013 KH domain CLI14_11035 PF03725 3' exoribonuclease family, domain 2 CLI14_11040 PF00312 Ribosomal protein S15 CLI14_11045 PF16198 tRNA pseudouridylate synthase B C-terminal domain CLI14_11045 PF09157 Pseudouridine synthase II TruB, C-terminal CLI14_11045 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLI14_11050 PF02033 Ribosome-binding factor A CLI14_11055 PF11987 Translation-initiation factor 2 CLI14_11055 PF00009 Elongation factor Tu GTP binding domain CLI14_11055 PF04760 Translation initiation factor IF-2, N-terminal region CLI14_11055 PF08364 Bacterial translation initiation factor IF-2 associated region CLI14_11060 PF13184 NusA-like KH domain CLI14_11060 PF08529 NusA N-terminal domain CLI14_11060 PF00575 S1 RNA binding domain CLI14_11065 PF02576 RimP N-terminal domain CLI14_11065 PF17384 RimP C-terminal SH3 domain CLI14_11080 PF03840 Preprotein translocase SecG subunit CLI14_11085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLI14_11085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLI14_11085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLI14_11085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLI14_11090 PF00809 Pterin binding enzyme CLI14_11095 PF00004 ATPase family associated with various cellular activities (AAA) CLI14_11095 PF17862 AAA+ lid domain CLI14_11095 PF01434 Peptidase family M41 CLI14_11095 PF06480 FtsH Extracellular CLI14_11100 PF01728 FtsJ-like methyltransferase CLI14_11105 PF01985 CRS1 / YhbY (CRM) domain CLI14_11110 PF01272 Transcription elongation factor, GreA/GreB, C-term CLI14_11110 PF03449 Transcription elongation factor, N-terminal CLI14_11115 PF13609 Gram-negative porin CLI14_11120 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CLI14_11125 PF03448 MgtE intracellular N domain CLI14_11125 PF01769 Divalent cation transporter CLI14_11125 PF00571 CBS domain CLI14_11135 PF01479 S4 domain CLI14_11135 PF00579 tRNA synthetases class I (W and Y) CLI14_11140 PF08525 Opacity-associated protein A N-terminal motif CLI14_11140 PF01551 Peptidase family M23 CLI14_11140 PF01476 LysM domain CLI14_11145 PF00873 AcrB/AcrD/AcrF family CLI14_11155 PF01521 Iron-sulphur cluster biosynthesis CLI14_11160 PF00202 Aminotransferase class-III CLI14_11165 PF01594 AI-2E family transporter CLI14_11170 PF08468 Methyltransferase small domain N-terminal CLI14_11170 PF05175 Methyltransferase small domain CLI14_11175 PF00512 His Kinase A (phospho-acceptor) domain CLI14_11175 PF09308 LuxQ, periplasmic CLI14_11175 PF00072 Response regulator receiver domain CLI14_11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_11180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI14_11185 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_11190 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_11190 PF12911 N-terminal TM domain of oligopeptide transport permease C CLI14_11195 PF00005 ABC transporter CLI14_11195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI14_11200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI14_11200 PF00005 ABC transporter CLI14_11210 PF01869 BadF/BadG/BcrA/BcrD ATPase family CLI14_11215 PF00728 Glycosyl hydrolase family 20, catalytic domain CLI14_11215 PF02838 Glycosyl hydrolase family 20, domain 2 CLI14_11220 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CLI14_11220 PF06165 Glycosyltransferase family 36 CLI14_11225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLI14_11225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLI14_11225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLI14_11230 PF00005 ABC transporter CLI14_11230 PF08402 TOBE domain CLI14_11240 PF13416 Bacterial extracellular solute-binding protein CLI14_11245 PF00909 Ammonium Transporter Family CLI14_11250 PF00543 Nitrogen regulatory protein P-II CLI14_11255 PF06062 Uncharacterised protein family (UPF0231) CLI14_11260 PF13556 PucR C-terminal helix-turn-helix domain CLI14_11260 PF17853 GGDEF-like domain CLI14_11260 PF05651 Putative sugar diacid recognition CLI14_11265 PF02447 GntP family permease CLI14_11270 PF02595 Glycerate kinase family CLI14_11275 PF00330 Aconitase family (aconitate hydratase) CLI14_11275 PF11791 Aconitate B N-terminal domain CLI14_11275 PF06434 Aconitate hydratase 2 N-terminus CLI14_11280 PF01734 Patatin-like phospholipase CLI14_11285 PF00912 Transglycosylase CLI14_11285 PF00905 Penicillin binding protein transpeptidase domain CLI14_11285 PF14814 Bifunctional transglycosylase second domain CLI14_11290 PF08482 ATP-dependent helicase C-terminal CLI14_11290 PF00270 DEAD/DEAH box helicase CLI14_11290 PF00271 Helicase conserved C-terminal domain CLI14_11290 PF04408 Helicase associated domain (HA2) CLI14_11295 PF03749 Sugar fermentation stimulation protein RE domain CLI14_11295 PF17746 SfsA N-terminal OB domain CLI14_11300 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLI14_11305 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLI14_11310 PF12626 Polymerase A arginine-rich C-terminus CLI14_11310 PF12627 Probable RNA and SrmB- binding site of polymerase A CLI14_11310 PF01743 Poly A polymerase head domain CLI14_11315 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLI14_11320 PF02548 Ketopantoate hydroxymethyltransferase CLI14_11325 PF02569 Pantoate-beta-alanine ligase CLI14_11335 PF01061 ABC-2 type transporter CLI14_11340 PF00005 ABC transporter CLI14_11345 PF01740 STAS domain CLI14_11345 PF00916 Sulfate permease family CLI14_11350 PF00484 Carbonic anhydrase CLI14_11355 PF00156 Phosphoribosyl transferase domain CLI14_11360 PF00440 Bacterial regulatory proteins, tetR family CLI14_11365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLI14_11365 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_11370 PF02817 e3 binding domain CLI14_11370 PF00364 Biotin-requiring enzyme CLI14_11370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLI14_11375 PF17831 Pyruvate dehydrogenase E1 component middle domain CLI14_11375 PF00456 Transketolase, thiamine diphosphate binding domain CLI14_11380 PF07729 FCD domain CLI14_11380 PF00392 Bacterial regulatory proteins, gntR family CLI14_11385 PF17768 RecJ OB domain CLI14_11385 PF02272 DHHA1 domain CLI14_11385 PF01368 DHH family CLI14_11390 PF13098 Thioredoxin-like domain CLI14_11390 PF10411 Disulfide bond isomerase protein N-terminus CLI14_11395 PF02899 Phage integrase, N-terminal SAM-like domain CLI14_11395 PF00589 Phage integrase family CLI14_11400 PF00258 Flavodoxin CLI14_11405 PF01510 N-acetylmuramoyl-L-alanine amidase CLI14_11410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLI14_11410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLI14_11425 PF00482 Type II secretion system (T2SS), protein F CLI14_11430 PF06750 Bacterial Peptidase A24 N-terminal domain CLI14_11430 PF01478 Type IV leader peptidase family CLI14_11435 PF01121 Dephospho-CoA kinase CLI14_11440 PF07072 Cell division protein CLI14_11445 PF03884 DNA gyrase inhibitor YacG CLI14_11450 PF01245 Ribosomal protein L19 CLI14_11455 PF01746 tRNA (Guanine-1)-methyltransferase CLI14_11470 PF02978 Signal peptide binding domain CLI14_11470 PF02881 SRP54-type protein, helical bundle domain CLI14_11470 PF00448 SRP54-type protein, GTPase domain CLI14_11475 PF01578 Cytochrome C assembly protein CLI14_11480 PF01595 Cyclin M transmembrane N-terminal domain CLI14_11480 PF03471 Transporter associated domain CLI14_11480 PF00571 CBS domain CLI14_11490 PF04262 Glutamate-cysteine ligase CLI14_11495 PF05193 Peptidase M16 inactive domain CLI14_11495 PF00675 Insulinase (Peptidase family M16) CLI14_11500 PF09335 SNARE associated Golgi protein CLI14_11505 PF00107 Zinc-binding dehydrogenase CLI14_11505 PF08240 Alcohol dehydrogenase GroES-like domain CLI14_11510 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CLI14_11515 PF00682 HMGL-like CLI14_11515 PF00364 Biotin-requiring enzyme CLI14_11515 PF02436 Conserved carboxylase domain CLI14_11520 PF04277 Oxaloacetate decarboxylase, gamma chain CLI14_11565 PF01842 ACT domain CLI14_11565 PF13840 ACT domain CLI14_11565 PF00696 Amino acid kinase family CLI14_11570 PF02272 DHHA1 domain CLI14_11570 PF01411 tRNA synthetases class II (A) CLI14_11570 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLI14_11575 PF02631 RecX family CLI14_11580 PF00154 recA bacterial DNA recombination protein CLI14_11585 PF02464 Competence-damaged protein CLI14_11590 PF00005 ABC transporter CLI14_11590 PF12857 TOBE-like domain CLI14_11595 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_11600 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_11610 PF00291 Pyridoxal-phosphate dependent enzyme CLI14_11615 PF00488 MutS domain V CLI14_11615 PF01624 MutS domain I CLI14_11615 PF05188 MutS domain II CLI14_11615 PF05192 MutS domain III CLI14_11615 PF05190 MutS family domain IV CLI14_11620 PF04542 Sigma-70 region 2 CLI14_11620 PF00140 Sigma-70 factor, region 1.2 CLI14_11620 PF04539 Sigma-70 region 3 CLI14_11620 PF04545 Sigma-70, region 4 CLI14_11625 PF01476 LysM domain CLI14_11625 PF01551 Peptidase family M23 CLI14_11635 PF01975 Survival protein SurE CLI14_11640 PF01142 tRNA pseudouridine synthase D (TruD) CLI14_11645 PF02542 YgbB family CLI14_11650 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLI14_11655 PF04977 Septum formation initiator CLI14_11660 PF02673 Bacitracin resistance protein BacA CLI14_11665 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLI14_11670 PF02152 Dihydroneopterin aldolase CLI14_11675 PF02660 Glycerol-3-phosphate acyltransferase CLI14_11695 PF09424 Yqey-like protein CLI14_11700 PF01807 CHC2 zinc finger CLI14_11700 PF08275 DNA primase catalytic core, N-terminal domain CLI14_11700 PF08278 DNA primase DnaG DnaB-binding CLI14_11700 PF10410 DnaB-helicase binding domain of primase CLI14_11705 PF04546 Sigma-70, non-essential region CLI14_11705 PF03979 Sigma-70 factor, region 1.1 CLI14_11705 PF00140 Sigma-70 factor, region 1.2 CLI14_11705 PF04542 Sigma-70 region 2 CLI14_11705 PF04539 Sigma-70 region 3 CLI14_11705 PF04545 Sigma-70, region 4 CLI14_11720 PF13657 HipA N-terminal domain CLI14_11720 PF07804 HipA-like C-terminal domain CLI14_11740 PF00580 UvrD/REP helicase N-terminal domain CLI14_11740 PF13361 UvrD-like helicase C-terminal domain CLI14_11755 PF13817 IS66 C-terminal element CLI14_11755 PF03050 Transposase IS66 family CLI14_11755 PF13005 zinc-finger binding domain of transposase IS66 CLI14_11755 PF13007 Transposase C of IS166 homeodomain CLI14_11795 PF04851 Type III restriction enzyme, res subunit CLI14_11795 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) CLI14_11795 PF00271 Helicase conserved C-terminal domain CLI14_11795 PF08463 EcoEI R protein C-terminal CLI14_11805 PF01555 DNA methylase CLI14_11850 PF01420 Type I restriction modification DNA specificity domain CLI14_11865 PF00239 Resolvase, N terminal domain CLI14_11865 PF02796 Helix-turn-helix domain of resolvase CLI14_11900 PF00665 Integrase core domain CLI14_11905 PF01695 IstB-like ATP binding protein CLI14_11945 PF00589 Phage integrase family CLI14_11945 PF02899 Phage integrase, N-terminal SAM-like domain CLI14_11950 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA CLI14_11955 PF15935 RNase LS, bacterial toxin CLI14_12060 PF04717 Type VI secretion system, phage-baseplate injector CLI14_12060 PF16671 Actin cross-linking domain CLI14_12065 PF05638 Type VI secretion system effector, Hcp CLI14_12070 PF00472 RF-1 domain CLI14_12080 PF11999 Protein of unknown function (DUF3494) CLI14_12080 PF02368 Bacterial Ig-like domain (group 2) CLI14_12085 PF01380 SIS domain CLI14_12090 PF00455 DeoR C terminal sensor domain CLI14_12090 PF08220 DeoR-like helix-turn-helix domain CLI14_12095 PF02887 Pyruvate kinase, alpha/beta domain CLI14_12095 PF00224 Pyruvate kinase, barrel domain CLI14_12100 PF00990 Diguanylate cyclase, GGDEF domain CLI14_12100 PF17158 Membrane-associated sensor, integral membrane domain CLI14_12110 PF03466 LysR substrate binding domain CLI14_12110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_12115 PF01810 LysE type translocator CLI14_12120 PF00924 Mechanosensitive ion channel CLI14_12120 PF05552 Conserved TM helix CLI14_12125 PF01116 Fructose-bisphosphate aldolase class-II CLI14_12135 PF00162 Phosphoglycerate kinase CLI14_12140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLI14_12140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLI14_12145 PF07715 TonB-dependent Receptor Plug Domain CLI14_12145 PF00593 TonB dependent receptor CLI14_12150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_12150 PF03466 LysR substrate binding domain CLI14_12155 PF02779 Transketolase, pyrimidine binding domain CLI14_12155 PF02780 Transketolase, C-terminal domain CLI14_12155 PF00456 Transketolase, thiamine diphosphate binding domain CLI14_12160 PF02772 S-adenosylmethionine synthetase, central domain CLI14_12160 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLI14_12160 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLI14_12165 PF17283 SprT-like zinc ribbon domain CLI14_12165 PF10263 SprT-like family CLI14_12170 PF04231 Endonuclease I CLI14_12175 PF04452 RNA methyltransferase CLI14_12180 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CLI14_12180 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CLI14_12185 PF02622 Uncharacterized ACR, COG1678 CLI14_12190 PF03652 Holliday junction resolvase CLI14_12195 PF00437 Type II/IV secretion system protein CLI14_12200 PF00437 Type II/IV secretion system protein CLI14_12205 PF01168 Alanine racemase, N-terminal domain CLI14_12210 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLI14_12210 PF03807 NADP oxidoreductase coenzyme F420-dependent CLI14_12215 PF02325 YGGT family CLI14_12220 PF02594 Uncharacterised ACR, YggU family COG1872 CLI14_12230 PF01725 Ham1 family CLI14_12235 PF06969 HemN C-terminal domain CLI14_12235 PF04055 Radical SAM superfamily CLI14_12240 PF04960 Glutaminase CLI14_12245 PF02390 Putative methyltransferase CLI14_12250 PF00730 HhH-GPD superfamily base excision DNA repair protein CLI14_12250 PF14815 NUDIX domain CLI14_12250 PF00633 Helix-hairpin-helix motif CLI14_12255 PF04362 Bacterial Fe(2+) trafficking CLI14_12260 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CLI14_12260 PF01464 Transglycosylase SLT domain CLI14_12310 PF00226 DnaJ domain CLI14_12310 PF05099 Tellurite resistance protein TerB CLI14_12315 PF04453 LPS transport system D CLI14_12315 PF03968 OstA-like protein CLI14_12320 PF09312 SurA N-terminal domain CLI14_12325 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CLI14_12330 PF00398 Ribosomal RNA adenine dimethylase CLI14_12335 PF04379 ApaG domain CLI14_12340 PF00149 Calcineurin-like phosphoesterase CLI14_12345 PF00186 Dihydrofolate reductase CLI14_12350 PF12821 Threonine/Serine exporter, ThrE CLI14_12355 PF06738 Putative threonine/serine exporter CLI14_12360 PF01926 50S ribosome-binding GTPase CLI14_12360 PF01018 GTP1/OBG CLI14_12365 PF01016 Ribosomal L27 protein CLI14_12380 PF00348 Polyprenyl synthetase CLI14_12385 PF13520 Amino acid permease CLI14_12390 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLI14_12390 PF00056 lactate/malate dehydrogenase, NAD binding domain CLI14_12405 PF16868 NMT1-like family CLI14_12415 PF00582 Universal stress protein family CLI14_12445 PF13657 HipA N-terminal domain CLI14_12445 PF07804 HipA-like C-terminal domain CLI14_12460 PF02384 N-6 DNA Methylase CLI14_12470 PF11867 Domain of unknown function (DUF3387) CLI14_12470 PF18766 SWI2/SNF2 ATPase CLI14_12470 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CLI14_12480 PF04245 37-kD nucleoid-associated bacterial protein CLI14_12510 PF06877 Regulator of ribonuclease activity B CLI14_12520 PF01523 Putative modulator of DNA gyrase CLI14_12525 PF00795 Carbon-nitrogen hydrolase CLI14_12530 PF13502 AsmA-like C-terminal region CLI14_12530 PF13116 Protein of unknown function CLI14_12535 PF00575 S1 RNA binding domain CLI14_12535 PF10150 Ribonuclease E/G family CLI14_12540 PF02545 Maf-like protein CLI14_12545 PF04093 rod shape-determining protein MreD CLI14_12550 PF04085 rod shape-determining protein MreC CLI14_12590 PF07963 Prokaryotic N-terminal methylation motif CLI14_12590 PF00114 Pilin (bacterial filament) CLI14_12600 PF00482 Type II secretion system (T2SS), protein F CLI14_12605 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CLI14_12605 PF00437 Type II/IV secretion system protein CLI14_12615 PF01471 Putative peptidoglycan binding domain CLI14_12615 PF13401 AAA domain CLI14_12620 PF03958 Bacterial type II/III secretion system short domain CLI14_12620 PF00263 Bacterial type II and III secretion system protein CLI14_12640 PF17157 Gammaproteobacterial periplasmic sensor domain CLI14_12640 PF00990 Diguanylate cyclase, GGDEF domain CLI14_12640 PF00563 EAL domain CLI14_12645 PF00436 Single-strand binding protein family CLI14_12650 PF00196 Bacterial regulatory proteins, luxR family CLI14_12655 PF00483 Nucleotidyl transferase CLI14_12660 PF00005 ABC transporter CLI14_12660 PF17760 UvrA interaction domain CLI14_12660 PF17755 UvrA DNA-binding domain CLI14_12670 PF03448 MgtE intracellular N domain CLI14_12670 PF01769 Divalent cation transporter CLI14_12670 PF00571 CBS domain CLI14_12685 PF00266 Aminotransferase class-V CLI14_12690 PF01842 ACT domain CLI14_12690 PF00696 Amino acid kinase family CLI14_12695 PF02310 B12 binding domain CLI14_12695 PF02607 B12 binding domain CLI14_12695 PF02965 Vitamin B12 dependent methionine synthase, activation domain CLI14_12695 PF00809 Pterin binding enzyme CLI14_12695 PF02574 Homocysteine S-methyltransferase CLI14_12700 PF00999 Sodium/hydrogen exchanger family CLI14_12740 PF01507 Phosphoadenosine phosphosulfate reductase family CLI14_12745 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLI14_12745 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLI14_12750 PF00667 FAD binding domain CLI14_12750 PF00258 Flavodoxin CLI14_12750 PF00175 Oxidoreductase NAD-binding domain CLI14_12770 PF01207 Dihydrouridine synthase (Dus) CLI14_12775 PF01475 Ferric uptake regulator family CLI14_12785 PF00342 Phosphoglucose isomerase CLI14_12790 PF01168 Alanine racemase, N-terminal domain CLI14_12790 PF00842 Alanine racemase, C-terminal domain CLI14_12795 PF03796 DnaB-like helicase C terminal domain CLI14_12795 PF00772 DnaB-like helicase N terminal domain CLI14_12805 PF01281 Ribosomal protein L9, N-terminal domain CLI14_12805 PF03948 Ribosomal protein L9, C-terminal domain CLI14_12810 PF01084 Ribosomal protein S18 CLI14_12815 PF00436 Single-strand binding protein family CLI14_12820 PF01250 Ribosomal protein S6 CLI14_12825 PF00009 Elongation factor Tu GTP binding domain CLI14_12825 PF03143 Elongation factor Tu C-terminal domain CLI14_12825 PF03144 Elongation factor Tu domain 2 CLI14_12830 PF14492 Elongation Factor G, domain II CLI14_12830 PF03764 Elongation factor G, domain IV CLI14_12830 PF00679 Elongation factor G C-terminus CLI14_12830 PF00009 Elongation factor Tu GTP binding domain CLI14_12830 PF03144 Elongation factor Tu domain 2 CLI14_12835 PF00177 Ribosomal protein S7p/S5e CLI14_12840 PF00164 Ribosomal protein S12/S23 CLI14_12845 PF04077 DsrH like protein CLI14_12850 PF02635 DsrE/DsrF-like family CLI14_12855 PF02635 DsrE/DsrF-like family CLI14_12860 PF08348 YheO-like PAS domain CLI14_12860 PF13309 HTH domain CLI14_12865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLI14_12865 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CLI14_12875 PF04102 SlyX CLI14_12880 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CLI14_12885 PF01145 SPFH domain / Band 7 family CLI14_12890 PF12221 Bacterial membrane protein N terminal CLI14_12890 PF01145 SPFH domain / Band 7 family CLI14_12895 PF01926 50S ribosome-binding GTPase CLI14_12895 PF16360 GTP-binding GTPase Middle Region CLI14_12895 PF13167 GTP-binding GTPase N-terminal CLI14_12900 PF17209 Hfq protein CLI14_12910 PF01119 DNA mismatch repair protein, C-terminal domain CLI14_12910 PF08676 MutL C terminal dimerisation domain CLI14_12915 PF01520 N-acetylmuramoyl-L-alanine amidase CLI14_12920 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CLI14_12925 PF08331 Domain of unknown function (DUF1730) CLI14_12975 PF00929 Exonuclease CLI14_12980 PF03193 RsgA GTPase CLI14_12985 PF02666 Phosphatidylserine decarboxylase CLI14_12990 PF02080 TrkA-C domain CLI14_12990 PF03600 Citrate transporter CLI14_12995 PF00672 HAMP domain CLI14_12995 PF02743 Cache domain CLI14_12995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_13005 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CLI14_13005 PF01676 Metalloenzyme superfamily CLI14_13010 PF01551 Peptidase family M23 CLI14_13020 PF08360 QacR-like protein, C-terminal region CLI14_13020 PF00440 Bacterial regulatory proteins, tetR family CLI14_13025 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLI14_13030 PF09297 NADH pyrophosphatase zinc ribbon domain CLI14_13030 PF00293 NUDIX domain CLI14_13035 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CLI14_13040 PF04997 RNA polymerase Rpb1, domain 1 CLI14_13040 PF04998 RNA polymerase Rpb1, domain 5 CLI14_13040 PF05000 RNA polymerase Rpb1, domain 4 CLI14_13040 PF04983 RNA polymerase Rpb1, domain 3 CLI14_13040 PF00623 RNA polymerase Rpb1, domain 2 CLI14_13045 PF04561 RNA polymerase Rpb2, domain 2 CLI14_13045 PF10385 RNA polymerase beta subunit external 1 domain CLI14_13045 PF00562 RNA polymerase Rpb2, domain 6 CLI14_13045 PF04560 RNA polymerase Rpb2, domain 7 CLI14_13045 PF04563 RNA polymerase beta subunit CLI14_13045 PF04565 RNA polymerase Rpb2, domain 3 CLI14_13050 PF00542 Ribosomal protein L7/L12 C-terminal domain CLI14_13050 PF16320 Ribosomal protein L7/L12 dimerisation domain CLI14_13055 PF00466 Ribosomal protein L10 CLI14_13060 PF00687 Ribosomal protein L1p/L10e family CLI14_13065 PF00298 Ribosomal protein L11, RNA binding domain CLI14_13065 PF03946 Ribosomal protein L11, N-terminal domain CLI14_13070 PF00467 KOW motif CLI14_13070 PF02357 Transcription termination factor nusG CLI14_13075 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CLI14_13080 PF03143 Elongation factor Tu C-terminal domain CLI14_13080 PF03144 Elongation factor Tu domain 2 CLI14_13080 PF00009 Elongation factor Tu GTP binding domain CLI14_13105 PF00485 Phosphoribulokinase / Uridine kinase family CLI14_13110 PF08279 HTH domain CLI14_13110 PF03099 Biotin/lipoate A/B protein ligase family CLI14_13110 PF02237 Biotin protein ligase C terminal domain CLI14_13115 PF01565 FAD binding domain CLI14_13115 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLI14_13125 PF13091 PLD-like domain CLI14_13160 PF00175 Oxidoreductase NAD-binding domain CLI14_13165 PF00970 Oxidoreductase FAD-binding domain CLI14_13165 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI14_13165 PF00175 Oxidoreductase NAD-binding domain CLI14_13170 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CLI14_13180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLI14_13180 PF07498 Rho termination factor, N-terminal domain CLI14_13180 PF07497 Rho termination factor, RNA-binding domain CLI14_13185 PF00085 Thioredoxin CLI14_13190 PF00271 Helicase conserved C-terminal domain CLI14_13190 PF00270 DEAD/DEAH box helicase CLI14_13195 PF02541 Ppx/GppA phosphatase family CLI14_13200 PF02592 Putative vitamin uptake transporter CLI14_13205 PF00625 Guanylate kinase CLI14_13210 PF01192 RNA polymerase Rpb6 CLI14_13215 PF13291 ACT domain CLI14_13215 PF04607 Region found in RelA / SpoT proteins CLI14_13215 PF02824 TGS domain CLI14_13220 PF00271 Helicase conserved C-terminal domain CLI14_13220 PF17191 RecG wedge domain CLI14_13220 PF00270 DEAD/DEAH box helicase CLI14_13225 PF00860 Permease family CLI14_13230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_13230 PF00512 His Kinase A (phospho-acceptor) domain CLI14_13230 PF00672 HAMP domain CLI14_13235 PF00072 Response regulator receiver domain CLI14_13235 PF00486 Transcriptional regulatory protein, C terminal CLI14_13240 PF00704 Glycosyl hydrolases family 18 CLI14_13240 PF06483 Chitinase C CLI14_13250 PF00881 Nitroreductase family CLI14_13260 PF03466 LysR substrate binding domain CLI14_13260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_13270 PF06942 GlpM protein CLI14_13280 PF03449 Transcription elongation factor, N-terminal CLI14_13280 PF01272 Transcription elongation factor, GreA/GreB, C-term CLI14_13285 PF17674 HHH domain CLI14_13285 PF00575 S1 RNA binding domain CLI14_13285 PF16921 Tex protein YqgF-like domain CLI14_13285 PF09371 Tex-like protein N-terminal domain CLI14_13295 PF00561 alpha/beta hydrolase fold CLI14_13300 PF00156 Phosphoribosyl transferase domain CLI14_13305 PF01106 NifU-like domain CLI14_13305 PF01521 Iron-sulphur cluster biosynthesis CLI14_13310 PF00293 NUDIX domain CLI14_13315 PF00459 Inositol monophosphatase family CLI14_13320 PF01203 Type II secretion system (T2SS), protein N CLI14_13325 PF04612 Type II secretion system (T2SS), protein M CLI14_13330 PF12693 GspL periplasmic domain CLI14_13330 PF05134 Type II secretion system (T2SS), protein L CLI14_13335 PF03934 Type II secretion system (T2SS), protein K CLI14_13340 PF11612 Type II secretion system (T2SS), protein J CLI14_13340 PF07963 Prokaryotic N-terminal methylation motif CLI14_13345 PF07963 Prokaryotic N-terminal methylation motif CLI14_13345 PF02501 Type II secretion system (T2SS), protein I CLI14_13350 PF12019 Type II transport protein GspH CLI14_13355 PF08334 Type II secretion system (T2SS), protein G CLI14_13355 PF07963 Prokaryotic N-terminal methylation motif CLI14_13360 PF00482 Type II secretion system (T2SS), protein F CLI14_13365 PF00437 Type II/IV secretion system protein CLI14_13370 PF00263 Bacterial type II and III secretion system protein CLI14_13370 PF03958 Bacterial type II/III secretion system short domain CLI14_13375 PF11356 Type II secretion system protein C CLI14_13380 PF01479 S4 domain CLI14_13385 PF01430 Hsp33 protein CLI14_13390 PF01293 Phosphoenolpyruvate carboxykinase CLI14_13400 PF09500 Putative thioesterase (yiiD_Cterm) CLI14_13400 PF00583 Acetyltransferase (GNAT) family CLI14_13405 PF02580 D-Tyr-tRNA(Tyr) deacylase CLI14_13410 PF03631 Virulence factor BrkB CLI14_13420 PF03951 Glutamine synthetase, beta-Grasp domain CLI14_13420 PF00120 Glutamine synthetase, catalytic domain CLI14_13430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_13430 PF00989 PAS fold CLI14_13430 PF00512 His Kinase A (phospho-acceptor) domain CLI14_13435 PF00072 Response regulator receiver domain CLI14_13435 PF02954 Bacterial regulatory protein, Fis family CLI14_13435 PF00158 Sigma-54 interaction domain CLI14_13440 PF13188 PAS domain CLI14_13440 PF03707 Bacterial signalling protein N terminal repeat CLI14_13440 PF00990 Diguanylate cyclase, GGDEF domain CLI14_13440 PF00563 EAL domain CLI14_13445 PF00962 Adenosine/AMP deaminase CLI14_13520 PF01177 Asp/Glu/Hydantoin racemase CLI14_13530 PF07715 TonB-dependent Receptor Plug Domain CLI14_13530 PF00593 TonB dependent receptor CLI14_13555 PF01381 Helix-turn-helix CLI14_13565 PF07804 HipA-like C-terminal domain CLI14_13565 PF13657 HipA N-terminal domain CLI14_13605 PF02796 Helix-turn-helix domain of resolvase CLI14_13605 PF00239 Resolvase, N terminal domain CLI14_13630 PF05958 tRNA (Uracil-5-)-methyltransferase CLI14_13640 PF16353 Domain of unknown function(DUF4981) CLI14_13640 PF02929 Beta galactosidase small chain CLI14_13640 PF00703 Glycosyl hydrolases family 2 CLI14_13640 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CLI14_13640 PF02837 Glycosyl hydrolases family 2, sugar binding domain CLI14_13650 PF07226 Protein of unknown function (DUF1422) CLI14_13655 PF00440 Bacterial regulatory proteins, tetR family CLI14_13665 PF01554 MatE CLI14_13675 PF00717 Peptidase S24-like CLI14_13675 PF01726 LexA DNA binding domain CLI14_13680 PF01553 Acyltransferase CLI14_13685 PF01040 UbiA prenyltransferase family CLI14_13690 PF04345 Chorismate lyase CLI14_13695 PF03748 Flagellar basal body-associated protein FliL CLI14_13700 PF01694 Rhomboid family CLI14_13700 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CLI14_13705 PF00581 Rhodanese-like domain CLI14_13710 PF04545 Sigma-70, region 4 CLI14_13710 PF04542 Sigma-70 region 2 CLI14_13710 PF00140 Sigma-70 factor, region 1.2 CLI14_13715 PF18075 FtsX extracellular domain CLI14_13720 PF00005 ABC transporter CLI14_13725 PF00448 SRP54-type protein, GTPase domain CLI14_13725 PF02881 SRP54-type protein, helical bundle domain CLI14_13750 PF13737 Transposase DDE domain CLI14_13775 PF13007 Transposase C of IS166 homeodomain CLI14_13775 PF13005 zinc-finger binding domain of transposase IS66 CLI14_13775 PF03050 Transposase IS66 family CLI14_13775 PF13817 IS66 C-terminal element CLI14_13790 PF01914 MarC family integral membrane protein CLI14_13820 PF00210 Ferritin-like domain CLI14_13825 PF08668 HDOD domain CLI14_13825 PF00563 EAL domain CLI14_13830 PF01810 LysE type translocator CLI14_13835 PF12146 Serine aminopeptidase, S33 CLI14_13855 PF13419 Haloacid dehalogenase-like hydrolase CLI14_13860 PF02899 Phage integrase, N-terminal SAM-like domain CLI14_13860 PF00589 Phage integrase family CLI14_13870 PF01678 Diaminopimelate epimerase CLI14_13875 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLI14_13875 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLI14_13885 PF01491 Frataxin-like domain CLI14_13890 PF01295 Adenylate cyclase, class-I CLI14_13890 PF12633 Adenylate cyclase NT domain CLI14_13895 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLI14_13895 PF03900 Porphobilinogen deaminase, C-terminal domain CLI14_13900 PF02602 Uroporphyrinogen-III synthase HemD CLI14_13905 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CLI14_13910 PF07219 HemY protein N-terminus CLI14_13945 PF00132 Bacterial transferase hexapeptide (six repeats) CLI14_13950 PF07369 Protein of unknown function (DUF1488) CLI14_13955 PF08501 Shikimate dehydrogenase substrate binding domain CLI14_13955 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CLI14_13955 PF01488 Shikimate / quinate 5-dehydrogenase CLI14_13960 PF01218 Coproporphyrinogen III oxidase CLI14_13965 PF01300 Telomere recombination CLI14_13970 PF00731 AIR carboxylase CLI14_13975 PF02222 ATP-grasp domain CLI14_13975 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CLI14_13980 PF01396 Topoisomerase DNA binding C4 zinc finger CLI14_13985 PF04361 Protein of unknown function (DUF494) CLI14_13990 PF17782 DprA winged helix domain CLI14_13990 PF02481 DNA recombination-mediator protein A CLI14_13995 PF01476 LysM domain CLI14_14000 PF01327 Polypeptide deformylase CLI14_14005 PF02911 Formyl transferase, C-terminal domain CLI14_14005 PF00551 Formyl transferase CLI14_14010 PF01029 NusB family CLI14_14010 PF01189 16S rRNA methyltransferase RsmB/F CLI14_14015 PF02254 TrkA-N domain CLI14_14015 PF02080 TrkA-C domain CLI14_14020 PF02386 Cation transport protein CLI14_14030 PF03006 Haemolysin-III related CLI14_14040 PF06288 Protein of unknown function (DUF1040) CLI14_14050 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CLI14_14050 PF12801 4Fe-4S binding domain CLI14_14050 PF13746 4Fe-4S dicluster domain CLI14_14055 PF01636 Phosphotransferase enzyme family CLI14_14060 PF01323 DSBA-like thioredoxin domain CLI14_14070 PF13005 zinc-finger binding domain of transposase IS66 CLI14_14070 PF03050 Transposase IS66 family CLI14_14070 PF13007 Transposase C of IS166 homeodomain CLI14_14070 PF13817 IS66 C-terminal element CLI14_14090 PF13005 zinc-finger binding domain of transposase IS66 CLI14_14090 PF13007 Transposase C of IS166 homeodomain CLI14_14090 PF13817 IS66 C-terminal element CLI14_14090 PF03050 Transposase IS66 family CLI14_14110 PF13817 IS66 C-terminal element CLI14_14110 PF13007 Transposase C of IS166 homeodomain CLI14_14110 PF13005 zinc-finger binding domain of transposase IS66 CLI14_14110 PF03050 Transposase IS66 family CLI14_14180 PF13335 Magnesium chelatase, subunit ChlI C-terminal CLI14_14180 PF01078 Magnesium chelatase, subunit ChlI CLI14_14185 PF00205 Thiamine pyrophosphate enzyme, central domain CLI14_14185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLI14_14185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLI14_14195 PF01063 Amino-transferase class IV CLI14_14200 PF00920 Dehydratase family CLI14_14205 PF00291 Pyridoxal-phosphate dependent enzyme CLI14_14205 PF00585 C-terminal regulatory domain of Threonine dehydratase CLI14_14210 PF00107 Zinc-binding dehydrogenase CLI14_14210 PF08240 Alcohol dehydrogenase GroES-like domain CLI14_14215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_14215 PF03466 LysR substrate binding domain CLI14_14225 PF01206 Sulfurtransferase TusA CLI14_14235 PF01169 Uncharacterized protein family UPF0016 CLI14_14240 PF02091 Glycyl-tRNA synthetase alpha subunit CLI14_14245 PF02092 Glycyl-tRNA synthetase beta subunit CLI14_14245 PF05746 DALR anticodon binding domain CLI14_14250 PF00155 Aminotransferase class I and II CLI14_14255 PF00011 Hsp20/alpha crystallin family CLI14_14270 PF01751 Toprim domain CLI14_14270 PF18053 DNA gyrase B subunit insert domain CLI14_14270 PF00204 DNA gyrase B CLI14_14270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_14270 PF00986 DNA gyrase B subunit, carboxyl terminus CLI14_14275 PF02463 RecF/RecN/SMC N terminal domain CLI14_14280 PF02768 DNA polymerase III beta subunit, C-terminal domain CLI14_14280 PF02767 DNA polymerase III beta subunit, central domain CLI14_14280 PF00712 DNA polymerase III beta subunit, N-terminal domain CLI14_14285 PF08299 Bacterial dnaA protein helix-turn-helix CLI14_14285 PF00308 Bacterial dnaA protein CLI14_14285 PF11638 DnaA N-terminal domain CLI14_14290 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI14_14295 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_14300 PF00005 ABC transporter CLI14_14305 PF00468 Ribosomal protein L34 CLI14_14310 PF00825 Ribonuclease P CLI14_14315 PF01809 Putative membrane protein insertion efficiency factor CLI14_14320 PF02096 60Kd inner membrane protein CLI14_14320 PF14849 YidC periplasmic domain CLI14_14325 PF10396 GTP-binding protein TrmE N-terminus CLI14_14325 PF12631 MnmE helical domain CLI14_14325 PF01926 50S ribosome-binding GTPase CLI14_14330 PF00258 Flavodoxin CLI14_14335 PF13614 AAA domain CLI14_14335 PF18607 ParA helix turn helix domain CLI14_14340 PF08775 ParB family CLI14_14340 PF02195 ParB-like nuclease domain CLI14_14350 PF14319 Transposase zinc-binding domain CLI14_14350 PF04986 Putative transposase CLI14_14360 PF05127 Helicase CLI14_14360 PF13718 GNAT acetyltransferase 2 CLI14_14370 PF00072 Response regulator receiver domain CLI14_14370 PF00486 Transcriptional regulatory protein, C terminal CLI14_14375 PF09078 CheY binding CLI14_14375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_14375 PF01584 CheW-like domain CLI14_14375 PF02895 Signal transducing histidine kinase, homodimeric domain CLI14_14375 PF01627 Hpt domain CLI14_14380 PF01584 CheW-like domain CLI14_14385 PF01584 CheW-like domain CLI14_14390 PF00672 HAMP domain CLI14_14390 PF02203 Tar ligand binding domain homologue CLI14_14390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_14395 PF01739 CheR methyltransferase, SAM binding domain CLI14_14395 PF03705 CheR methyltransferase, all-alpha domain CLI14_14400 PF03975 CheD chemotactic sensory transduction CLI14_14405 PF00072 Response regulator receiver domain CLI14_14405 PF01339 CheB methylesterase CLI14_14410 PF02743 Cache domain CLI14_14410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_14410 PF00672 HAMP domain CLI14_14420 PF00990 Diguanylate cyclase, GGDEF domain CLI14_14420 PF00072 Response regulator receiver domain CLI14_14430 PF00664 ABC transporter transmembrane region CLI14_14430 PF03412 Peptidase C39 family CLI14_14430 PF00005 ABC transporter CLI14_14445 PF00529 HlyD membrane-fusion protein of T1SS CLI14_14450 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CLI14_14450 PF01243 Pyridoxamine 5'-phosphate oxidase CLI14_14460 PF03781 Sulfatase-modifying factor enzyme 1 CLI14_14470 PF12833 Helix-turn-helix domain CLI14_14475 PF01619 Proline dehydrogenase CLI14_14475 PF14850 DNA-binding domain of Proline dehydrogenase CLI14_14475 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CLI14_14475 PF00171 Aldehyde dehydrogenase family CLI14_14485 PF00474 Sodium:solute symporter family CLI14_14495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_14495 PF00672 HAMP domain CLI14_14495 PF02743 Cache domain CLI14_14500 PF01037 Lrp/AsnC ligand binding domain CLI14_14505 PF00171 Aldehyde dehydrogenase family CLI14_14515 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLI14_14520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_14520 PF02743 Cache domain CLI14_14520 PF00672 HAMP domain CLI14_14530 PF00672 HAMP domain CLI14_14530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_14530 PF17200 Single Cache domain 2 CLI14_14535 PF10928 Protein of unknown function (DUF2810) CLI14_14540 PF00196 Bacterial regulatory proteins, luxR family CLI14_14540 PF17874 MalT-like TPR region CLI14_14545 PF00343 Carbohydrate phosphorylase CLI14_14550 PF02446 4-alpha-glucanotransferase CLI14_14555 PF02806 Alpha amylase, C-terminal all-beta domain CLI14_14555 PF00128 Alpha amylase, catalytic domain CLI14_14555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLI14_14560 PF05638 Type VI secretion system effector, Hcp CLI14_14565 PF16671 Actin cross-linking domain CLI14_14565 PF04717 Type VI secretion system, phage-baseplate injector CLI14_14580 PF14319 Transposase zinc-binding domain CLI14_14580 PF04986 Putative transposase CLI14_14595 PF03466 LysR substrate binding domain CLI14_14595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_14600 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLI14_14600 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CLI14_14605 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLI14_14610 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CLI14_14610 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CLI14_14620 PF13654 AAA domain CLI14_14620 PF05362 Lon protease (S16) C-terminal proteolytic domain CLI14_14625 PF00672 HAMP domain CLI14_14625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_14630 PF07690 Major Facilitator Superfamily CLI14_14645 PF01554 MatE CLI14_14650 PF02264 LamB porin CLI14_14655 PF00356 Bacterial regulatory proteins, lacI family CLI14_14665 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_14670 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_14675 PF00005 ABC transporter CLI14_14675 PF17912 MalK OB fold domain CLI14_14680 PF14310 Fibronectin type III-like domain CLI14_14680 PF00933 Glycosyl hydrolase family 3 N terminal domain CLI14_14680 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLI14_14685 PF00356 Bacterial regulatory proteins, lacI family CLI14_14695 PF04986 Putative transposase CLI14_14695 PF14319 Transposase zinc-binding domain CLI14_14715 PF03372 Endonuclease/Exonuclease/phosphatase family CLI14_14725 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CLI14_14730 PF01161 Phosphatidylethanolamine-binding protein CLI14_14745 PF01070 FMN-dependent dehydrogenase CLI14_14750 PF02652 L-lactate permease CLI14_14755 PF03466 LysR substrate binding domain CLI14_14755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_14775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLI14_14775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLI14_14775 PF00205 Thiamine pyrophosphate enzyme, central domain CLI14_14780 PF03306 Alpha-acetolactate decarboxylase CLI14_14785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_14785 PF03466 LysR substrate binding domain CLI14_14790 PF03009 Glycerophosphoryl diester phosphodiesterase family CLI14_14795 PF07690 Major Facilitator Superfamily CLI14_14800 PF18416 N-acetylglucosamine binding protein domain 2 CLI14_14800 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CLI14_14810 PF03922 OmpW family CLI14_14815 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLI14_14815 PF07504 Fungalysin/Thermolysin Propeptide Motif CLI14_14815 PF03413 Peptidase propeptide and YPEB domain CLI14_14815 PF04151 Bacterial pre-peptidase C-terminal domain CLI14_14815 PF01447 Thermolysin metallopeptidase, catalytic domain CLI14_14830 PF13302 Acetyltransferase (GNAT) domain CLI14_14835 PF00392 Bacterial regulatory proteins, gntR family CLI14_14835 PF00155 Aminotransferase class I and II CLI14_14845 PF12849 PBP superfamily domain CLI14_14850 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_14855 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_14860 PF00005 ABC transporter CLI14_14865 PF07694 5TMR of 5TMR-LYT CLI14_14865 PF00990 Diguanylate cyclase, GGDEF domain CLI14_14880 PF00916 Sulfate permease family CLI14_14880 PF01740 STAS domain CLI14_14890 PF08525 Opacity-associated protein A N-terminal motif CLI14_14890 PF01551 Peptidase family M23 CLI14_14890 PF01476 LysM domain CLI14_14895 PF08448 PAS fold CLI14_14895 PF08447 PAS fold CLI14_14895 PF00990 Diguanylate cyclase, GGDEF domain CLI14_14895 PF00563 EAL domain CLI14_14900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_14900 PF03466 LysR substrate binding domain CLI14_14905 PF07690 Major Facilitator Superfamily CLI14_14920 PF00462 Glutaredoxin CLI14_14925 PF00892 EamA-like transporter family CLI14_14935 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLI14_14955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLI14_14955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLI14_14955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLI14_14955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLI14_14960 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_14965 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI14_14970 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_14975 PF00005 ABC transporter CLI14_14980 PF00793 DAHP synthetase I family CLI14_14990 PF06865 Pyrimidine/purine nucleoside phosphorylase CLI14_15000 PF05726 Pirin C-terminal cupin domain CLI14_15000 PF02678 Pirin CLI14_15010 PF00990 Diguanylate cyclase, GGDEF domain CLI14_15010 PF00563 EAL domain CLI14_15015 PF03466 LysR substrate binding domain CLI14_15015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_15030 PF00563 EAL domain CLI14_15030 PF03707 Bacterial signalling protein N terminal repeat CLI14_15030 PF00990 Diguanylate cyclase, GGDEF domain CLI14_15045 PF00990 Diguanylate cyclase, GGDEF domain CLI14_15050 PF04237 YjbR CLI14_15055 PF01584 CheW-like domain CLI14_15055 PF00072 Response regulator receiver domain CLI14_15065 PF00196 Bacterial regulatory proteins, luxR family CLI14_15070 PF08402 TOBE domain CLI14_15070 PF00005 ABC transporter CLI14_15075 PF01547 Bacterial extracellular solute-binding protein CLI14_15080 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_15080 PF14785 Maltose transport system permease protein MalF P2 domain CLI14_15085 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_15100 PF00765 Autoinducer synthase CLI14_15105 PF00196 Bacterial regulatory proteins, luxR family CLI14_15105 PF03472 Autoinducer binding domain CLI14_15110 PF00455 DeoR C terminal sensor domain CLI14_15110 PF08220 DeoR-like helix-turn-helix domain CLI14_15115 PF17151 Periplasmic sensor domain CLI14_15115 PF00990 Diguanylate cyclase, GGDEF domain CLI14_15135 PF13737 Transposase DDE domain CLI14_15140 PF00196 Bacterial regulatory proteins, luxR family CLI14_15140 PF00072 Response regulator receiver domain CLI14_15150 PF13737 Transposase DDE domain CLI14_15175 PF05661 Protein of unknown function (DUF808) CLI14_15180 PF05958 tRNA (Uracil-5-)-methyltransferase CLI14_15190 PF03476 MOSC N-terminal beta barrel domain CLI14_15190 PF03473 MOSC domain CLI14_15190 PF00111 2Fe-2S iron-sulfur cluster binding domain CLI14_15195 PF07662 Na+ dependent nucleoside transporter C-terminus CLI14_15195 PF01773 Na+ dependent nucleoside transporter N-terminus CLI14_15195 PF07670 Nucleoside recognition CLI14_15210 PF00158 Sigma-54 interaction domain CLI14_15210 PF01590 GAF domain CLI14_15220 PF07152 YaeQ protein CLI14_15225 PF00313 'Cold-shock' DNA-binding domain CLI14_15250 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLI14_15250 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLI14_15255 PF00478 IMP dehydrogenase / GMP reductase domain CLI14_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_15260 PF00072 Response regulator receiver domain CLI14_15265 PF17327 Acyl homoserine lactone synthase CLI14_15270 PF00582 Universal stress protein family CLI14_15275 PF00916 Sulfate permease family CLI14_15275 PF01740 STAS domain CLI14_15285 PF01758 Sodium Bile acid symporter family CLI14_15290 PF01022 Bacterial regulatory protein, arsR family CLI14_15295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLI14_15295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLI14_15310 PF04013 Putative SAM-dependent RNA methyltransferase CLI14_15330 PF07690 Major Facilitator Superfamily CLI14_15335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_15335 PF07730 Histidine kinase CLI14_15335 PF05231 MASE1 CLI14_15340 PF00196 Bacterial regulatory proteins, luxR family CLI14_15340 PF00072 Response regulator receiver domain CLI14_15345 PF07690 Major Facilitator Superfamily CLI14_15355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLI14_15360 PF03466 LysR substrate binding domain CLI14_15360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_15365 PF00155 Aminotransferase class I and II CLI14_15370 PF08240 Alcohol dehydrogenase GroES-like domain CLI14_15370 PF00107 Zinc-binding dehydrogenase CLI14_15375 PF01219 Prokaryotic diacylglycerol kinase CLI14_15385 PF00884 Sulfatase CLI14_15390 PF12843 Putative quorum-sensing-regulated virulence factor CLI14_15395 PF01844 HNH endonuclease CLI14_15405 PF00990 Diguanylate cyclase, GGDEF domain CLI14_15420 PF13519 von Willebrand factor type A domain CLI14_15435 PF01882 Protein of unknown function DUF58 CLI14_15440 PF07726 ATPase family associated with various cellular activities (AAA) CLI14_15440 PF17863 AAA lid domain CLI14_15445 PF00672 HAMP domain CLI14_15445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_15445 PF02743 Cache domain CLI14_15460 PF00128 Alpha amylase, catalytic domain CLI14_15465 PF00672 HAMP domain CLI14_15465 PF02743 Cache domain CLI14_15465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_15495 PF02540 NAD synthase CLI14_15500 PF01467 Cytidylyltransferase-like CLI14_15510 PF00583 Acetyltransferase (GNAT) family CLI14_15515 PF00202 Aminotransferase class-III CLI14_15520 PF06339 Ectoine synthase CLI14_15525 PF13840 ACT domain CLI14_15525 PF00696 Amino acid kinase family CLI14_15545 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CLI14_15550 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_15555 PF00005 ABC transporter CLI14_15555 PF00571 CBS domain CLI14_15565 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLI14_15565 PF17810 Arginine decarboxylase helical bundle domain CLI14_15565 PF17944 Arginine decarboxylase C-terminal helical extension CLI14_15570 PF00491 Arginase family CLI14_15575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_15575 PF00672 HAMP domain CLI14_15575 PF02743 Cache domain CLI14_15585 PF00194 Eukaryotic-type carbonic anhydrase CLI14_15590 PF00563 EAL domain CLI14_15590 PF00990 Diguanylate cyclase, GGDEF domain CLI14_15590 PF03707 Bacterial signalling protein N terminal repeat CLI14_15590 PF13188 PAS domain CLI14_15595 PF00294 pfkB family carbohydrate kinase CLI14_15615 PF04986 Putative transposase CLI14_15615 PF14319 Transposase zinc-binding domain CLI14_15625 PF13419 Haloacid dehalogenase-like hydrolase CLI14_15640 PF00684 DnaJ central domain CLI14_15640 PF01556 DnaJ C terminal domain CLI14_15640 PF00226 DnaJ domain CLI14_15650 PF00990 Diguanylate cyclase, GGDEF domain CLI14_15650 PF00563 EAL domain CLI14_15650 PF00498 FHA domain CLI14_15655 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CLI14_15655 PF12241 Trans-2-enoyl-CoA reductase catalytic region CLI14_15655 PF07055 Enoyl reductase FAD binding domain CLI14_15660 PF13472 GDSL-like Lipase/Acylhydrolase family CLI14_15665 PF00005 ABC transporter CLI14_15680 PF02626 Carboxyltransferase domain, subdomain A and B CLI14_15690 PF03746 LamB/YcsF family CLI14_15695 PF16363 GDP-mannose 4,6 dehydratase CLI14_15700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_15700 PF00672 HAMP domain CLI14_15705 PF03222 Tryptophan/tyrosine permease family CLI14_15710 PF00271 Helicase conserved C-terminal domain CLI14_15710 PF00270 DEAD/DEAH box helicase CLI14_15720 PF01212 Beta-eliminating lyase CLI14_15730 PF07728 AAA domain (dynein-related subfamily) CLI14_15730 PF17868 AAA lid domain CLI14_15730 PF12592 Protein of unknown function (DUF3763) CLI14_15735 PF05762 VWA domain containing CoxE-like protein CLI14_15750 PF00005 ABC transporter CLI14_15750 PF00571 CBS domain CLI14_15755 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_15760 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CLI14_15765 PF00732 GMC oxidoreductase CLI14_15765 PF05199 GMC oxidoreductase CLI14_15770 PF00171 Aldehyde dehydrogenase family CLI14_15775 PF13977 BetI-type transcriptional repressor, C-terminal CLI14_15775 PF00440 Bacterial regulatory proteins, tetR family CLI14_15785 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLI14_15785 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLI14_15785 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLI14_15785 PF18267 Rubredoxin NAD+ reductase C-terminal domain CLI14_15785 PF04324 BFD-like [2Fe-2S] binding domain CLI14_15790 PF13806 Rieske-like [2Fe-2S] domain CLI14_15800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLI14_15800 PF14824 Sirohaem biosynthesis protein central CLI14_15800 PF10414 Sirohaem synthase dimerisation region CLI14_15805 PF01513 ATP-NAD kinase CLI14_15815 PF11756 Nitrous oxide-stimulated promoter CLI14_15820 PF07690 Major Facilitator Superfamily CLI14_15825 PF00085 Thioredoxin CLI14_15830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLI14_15830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLI14_15835 PF13183 4Fe-4S dicluster domain CLI14_15835 PF02754 Cysteine-rich domain CLI14_15840 PF00890 FAD binding domain CLI14_15845 PF04324 BFD-like [2Fe-2S] binding domain CLI14_15845 PF01266 FAD dependent oxidoreductase CLI14_15850 PF00230 Major intrinsic protein CLI14_15855 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLI14_15855 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLI14_15865 PF04363 Protein of unknown function (DUF496) CLI14_15880 PF01541 GIY-YIG catalytic domain CLI14_15890 PF13407 Periplasmic binding protein domain CLI14_15895 PF00072 Response regulator receiver domain CLI14_15895 PF09308 LuxQ, periplasmic CLI14_15895 PF00512 His Kinase A (phospho-acceptor) domain CLI14_15895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_15905 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CLI14_15905 PF01266 FAD dependent oxidoreductase CLI14_15925 PF12805 FUSC-like inner membrane protein yccS CLI14_15930 PF13361 UvrD-like helicase C-terminal domain CLI14_15930 PF00580 UvrD/REP helicase N-terminal domain CLI14_15930 PF12462 DNA helicase IV / RNA helicase N terminal CLI14_15935 PF02142 MGS-like domain CLI14_15940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CLI14_15945 PF00672 HAMP domain CLI14_15945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_15945 PF00072 Response regulator receiver domain CLI14_15945 PF00512 His Kinase A (phospho-acceptor) domain CLI14_15945 PF01627 Hpt domain CLI14_15950 PF00224 Pyruvate kinase, barrel domain CLI14_15950 PF02887 Pyruvate kinase, alpha/beta domain CLI14_15955 PF07690 Major Facilitator Superfamily CLI14_15970 PF00672 HAMP domain CLI14_15970 PF00512 His Kinase A (phospho-acceptor) domain CLI14_15970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_15975 PF00072 Response regulator receiver domain CLI14_15975 PF14532 Sigma-54 interaction domain CLI14_15975 PF02954 Bacterial regulatory protein, Fis family CLI14_15980 PF00465 Iron-containing alcohol dehydrogenase CLI14_15985 PF06719 AraC-type transcriptional regulator N-terminus CLI14_15985 PF12833 Helix-turn-helix domain CLI14_15990 PF06483 Chitinase C CLI14_15990 PF00704 Glycosyl hydrolases family 18 CLI14_15995 PF00483 Nucleotidyl transferase CLI14_16000 PF08448 PAS fold CLI14_16000 PF00563 EAL domain CLI14_16000 PF13426 PAS domain CLI14_16000 PF05231 MASE1 CLI14_16000 PF08447 PAS fold CLI14_16000 PF00990 Diguanylate cyclase, GGDEF domain CLI14_16010 PF04076 Bacterial OB fold (BOF) protein CLI14_16015 PF07685 CobB/CobQ-like glutamine amidotransferase domain CLI14_16015 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLI14_16025 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_16030 PF00005 ABC transporter CLI14_16030 PF03459 TOBE domain CLI14_16040 PF00563 EAL domain CLI14_16040 PF00990 Diguanylate cyclase, GGDEF domain CLI14_16040 PF01590 GAF domain CLI14_16040 PF00360 Phytochrome region CLI14_16055 PF00072 Response regulator receiver domain CLI14_16065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_16065 PF00989 PAS fold CLI14_16065 PF00512 His Kinase A (phospho-acceptor) domain CLI14_16070 PF00512 His Kinase A (phospho-acceptor) domain CLI14_16070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_16075 PF00563 EAL domain CLI14_16075 PF00990 Diguanylate cyclase, GGDEF domain CLI14_16075 PF03707 Bacterial signalling protein N terminal repeat CLI14_16075 PF13188 PAS domain CLI14_16080 PF00158 Sigma-54 interaction domain CLI14_16080 PF00072 Response regulator receiver domain CLI14_16080 PF02954 Bacterial regulatory protein, Fis family CLI14_16100 PF04143 Sulphur transport CLI14_16110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLI14_16110 PF00529 HlyD membrane-fusion protein of T1SS CLI14_16115 PF00873 AcrB/AcrD/AcrF family CLI14_16120 PF07694 5TMR of 5TMR-LYT CLI14_16120 PF00990 Diguanylate cyclase, GGDEF domain CLI14_16125 PF13597 Anaerobic ribonucleoside-triphosphate reductase CLI14_16125 PF03477 ATP cone domain CLI14_16135 PF00155 Aminotransferase class I and II CLI14_16140 PF08443 RimK-like ATP-grasp domain CLI14_16140 PF18030 RimK PreATP-grasp domain CLI14_16155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLI14_16160 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_16165 PF12911 N-terminal TM domain of oligopeptide transport permease C CLI14_16165 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_16170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLI14_16170 PF00005 ABC transporter CLI14_16175 PF00563 EAL domain CLI14_16175 PF01590 GAF domain CLI14_16175 PF00990 Diguanylate cyclase, GGDEF domain CLI14_16175 PF00360 Phytochrome region CLI14_16185 PF01292 Prokaryotic cytochrome b561 CLI14_16190 PF04264 YceI-like domain CLI14_16195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_16195 PF00672 HAMP domain CLI14_16195 PF12729 Four helix bundle sensory module for signal transduction CLI14_16200 PF13419 Haloacid dehalogenase-like hydrolase CLI14_16205 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CLI14_16205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLI14_16220 PF02779 Transketolase, pyrimidine binding domain CLI14_16220 PF02780 Transketolase, C-terminal domain CLI14_16220 PF00456 Transketolase, thiamine diphosphate binding domain CLI14_16225 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLI14_16235 PF00704 Glycosyl hydrolases family 18 CLI14_16235 PF08329 Chitinase A, N-terminal domain CLI14_16240 PF00581 Rhodanese-like domain CLI14_16245 PF00899 ThiF family CLI14_16250 PF03453 MoeA N-terminal region (domain I and II) CLI14_16250 PF00994 Probable molybdopterin binding domain CLI14_16250 PF03454 MoeA C-terminal region (domain IV) CLI14_16255 PF01227 GTP cyclohydrolase I CLI14_16260 PF01625 Peptide methionine sulfoxide reductase CLI14_16260 PF01641 SelR domain CLI14_16265 PF01268 Formate--tetrahydrofolate ligase CLI14_16270 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLI14_16270 PF00588 SpoU rRNA Methylase family CLI14_16275 PF11953 Domain of unknown function (DUF3470) CLI14_16275 PF00037 4Fe-4S binding domain CLI14_16290 PF13419 Haloacid dehalogenase-like hydrolase CLI14_16295 PF01272 Transcription elongation factor, GreA/GreB, C-term CLI14_16295 PF14760 Rnk N-terminus CLI14_16300 PF00392 Bacterial regulatory proteins, gntR family CLI14_16300 PF07702 UTRA domain CLI14_16310 PF00854 POT family CLI14_16320 PF01226 Formate/nitrite transporter CLI14_16325 PF03466 LysR substrate binding domain CLI14_16325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_16330 PF06496 Protein of unknown function (DUF1097) CLI14_16335 PF11398 Protein of unknown function (DUF2813) CLI14_16340 PF00149 Calcineurin-like phosphoesterase CLI14_16340 PF02872 5'-nucleotidase, C-terminal domain CLI14_16350 PF03050 Transposase IS66 family CLI14_16350 PF13007 Transposase C of IS166 homeodomain CLI14_16350 PF13005 zinc-finger binding domain of transposase IS66 CLI14_16350 PF13817 IS66 C-terminal element CLI14_16390 PF03050 Transposase IS66 family CLI14_16390 PF13005 zinc-finger binding domain of transposase IS66 CLI14_16390 PF13817 IS66 C-terminal element CLI14_16390 PF13007 Transposase C of IS166 homeodomain CLI14_16425 PF13007 Transposase C of IS166 homeodomain CLI14_16425 PF13817 IS66 C-terminal element CLI14_16425 PF03050 Transposase IS66 family CLI14_16425 PF13005 zinc-finger binding domain of transposase IS66 CLI14_16555 PF01526 Tn3 transposase DDE domain CLI14_16555 PF13700 Domain of unknown function (DUF4158) CLI14_16560 PF00239 Resolvase, N terminal domain CLI14_16560 PF02796 Helix-turn-helix domain of resolvase CLI14_16570 PF02631 RecX family CLI14_16655 PF08212 Lipocalin-like domain CLI14_16725 PF13005 zinc-finger binding domain of transposase IS66 CLI14_16725 PF13817 IS66 C-terminal element CLI14_16725 PF03050 Transposase IS66 family CLI14_16725 PF13007 Transposase C of IS166 homeodomain CLI14_16755 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CLI14_16795 PF13737 Transposase DDE domain CLI14_16885 PF01253 Translation initiation factor SUI1 CLI14_16900 PF01820 D-ala D-ala ligase N-terminus CLI14_16900 PF07478 D-ala D-ala ligase C-terminus CLI14_16910 PF13380 CoA binding domain CLI14_16910 PF00583 Acetyltransferase (GNAT) family CLI14_16910 PF13607 Succinyl-CoA ligase like flavodoxin domain CLI14_16915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_16915 PF03466 LysR substrate binding domain CLI14_16935 PF03050 Transposase IS66 family CLI14_16935 PF13817 IS66 C-terminal element CLI14_16935 PF13007 Transposase C of IS166 homeodomain CLI14_16935 PF13005 zinc-finger binding domain of transposase IS66 CLI14_17035 PF13007 Transposase C of IS166 homeodomain CLI14_17035 PF03050 Transposase IS66 family CLI14_17035 PF13817 IS66 C-terminal element CLI14_17035 PF13005 zinc-finger binding domain of transposase IS66 CLI14_17165 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CLI14_17205 PF13005 zinc-finger binding domain of transposase IS66 CLI14_17205 PF03050 Transposase IS66 family CLI14_17205 PF13817 IS66 C-terminal element CLI14_17205 PF13007 Transposase C of IS166 homeodomain CLI14_17220 PF08242 Methyltransferase domain CLI14_17240 PF13817 IS66 C-terminal element CLI14_17240 PF13005 zinc-finger binding domain of transposase IS66 CLI14_17240 PF03050 Transposase IS66 family CLI14_17240 PF13007 Transposase C of IS166 homeodomain CLI14_17245 PF00589 Phage integrase family CLI14_17245 PF13495 Phage integrase, N-terminal SAM-like domain CLI14_17250 PF00453 Ribosomal protein L20 CLI14_17255 PF01632 Ribosomal protein L35 CLI14_17260 PF00707 Translation initiation factor IF-3, C-terminal domain CLI14_17260 PF05198 Translation initiation factor IF-3, N-terminal domain CLI14_17265 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLI14_17265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLI14_17265 PF02824 TGS domain CLI14_17265 PF03129 Anticodon binding domain CLI14_17270 PF00271 Helicase conserved C-terminal domain CLI14_17270 PF00270 DEAD/DEAH box helicase CLI14_17270 PF03880 DbpA RNA binding domain CLI14_17275 PF00575 S1 RNA binding domain CLI14_17275 PF00773 RNB domain CLI14_17275 PF08206 Ribonuclease B OB domain CLI14_17285 PF12849 PBP superfamily domain CLI14_17310 PF03606 C4-dicarboxylate anaerobic carrier CLI14_17315 PF00072 Response regulator receiver domain CLI14_17315 PF00196 Bacterial regulatory proteins, luxR family CLI14_17320 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CLI14_17320 PF07730 Histidine kinase CLI14_17320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_17320 PF00672 HAMP domain CLI14_17325 PF13187 4Fe-4S dicluster domain CLI14_17325 PF12838 4Fe-4S dicluster domain CLI14_17335 PF01568 Molydopterin dinucleotide binding domain CLI14_17335 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLI14_17335 PF00384 Molybdopterin oxidoreductase CLI14_17340 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CLI14_17345 PF03264 NapC/NirT cytochrome c family, N-terminal region CLI14_17355 PF07549 SecD/SecF GG Motif CLI14_17355 PF02355 Protein export membrane protein CLI14_17360 PF02355 Protein export membrane protein CLI14_17360 PF13721 SecD export protein N-terminal TM region CLI14_17360 PF07549 SecD/SecF GG Motif CLI14_17380 PF00128 Alpha amylase, catalytic domain CLI14_17380 PF02903 Alpha amylase, N-terminal ig-like domain CLI14_17385 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_17390 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_17395 PF13416 Bacterial extracellular solute-binding protein CLI14_17405 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CLI14_17405 PF00132 Bacterial transferase hexapeptide (six repeats) CLI14_17415 PF03459 TOBE domain CLI14_17415 PF17912 MalK OB fold domain CLI14_17415 PF00005 ABC transporter CLI14_17420 PF03829 PTS system glucitol/sorbitol-specific IIA component CLI14_17425 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CLI14_17425 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CLI14_17430 PF03608 PTS system enzyme II sorbitol-specific factor CLI14_17435 PF00455 DeoR C terminal sensor domain CLI14_17435 PF08220 DeoR-like helix-turn-helix domain CLI14_17440 PF06923 Glucitol operon activator protein (GutM) CLI14_17445 PF00106 short chain dehydrogenase CLI14_17450 PF03829 PTS system glucitol/sorbitol-specific IIA component CLI14_17455 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CLI14_17455 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CLI14_17460 PF03608 PTS system enzyme II sorbitol-specific factor CLI14_17490 PF01926 50S ribosome-binding GTPase CLI14_17505 PF00005 ABC transporter CLI14_17505 PF12704 MacB-like periplasmic core domain CLI14_17505 PF02687 FtsX-like permease family CLI14_17510 PF12704 MacB-like periplasmic core domain CLI14_17510 PF00005 ABC transporter CLI14_17510 PF02687 FtsX-like permease family CLI14_17515 PF00005 ABC transporter CLI14_17520 PF07683 Cobalamin synthesis protein cobW C-terminal domain CLI14_17520 PF02492 CobW/HypB/UreG, nucleotide-binding domain CLI14_17535 PF00155 Aminotransferase class I and II CLI14_17540 PF00072 Response regulator receiver domain CLI14_17540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_17545 PF13476 AAA domain CLI14_17550 PF00149 Calcineurin-like phosphoesterase CLI14_17550 PF12320 Type 5 capsule protein repressor C-terminal domain CLI14_17555 PF00356 Bacterial regulatory proteins, lacI family CLI14_17555 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CLI14_17560 PF00381 PTS HPr component phosphorylation site CLI14_17560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI14_17565 PF00294 pfkB family carbohydrate kinase CLI14_17570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLI14_17570 PF02378 Phosphotransferase system, EIIC CLI14_17585 PF00675 Insulinase (Peptidase family M16) CLI14_17585 PF05193 Peptidase M16 inactive domain CLI14_17600 PF08669 Glycine cleavage T-protein C-terminal barrel domain CLI14_17600 PF01571 Aminomethyltransferase folate-binding domain CLI14_17610 PF00464 Serine hydroxymethyltransferase CLI14_17620 PF02347 Glycine cleavage system P-protein CLI14_17635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLI14_17635 PF00529 HlyD membrane-fusion protein of T1SS CLI14_17655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_17655 PF03466 LysR substrate binding domain CLI14_17660 PF00248 Aldo/keto reductase family CLI14_17665 PF02525 Flavodoxin-like fold CLI14_17675 PF03741 Integral membrane protein TerC family CLI14_17680 PF00672 HAMP domain CLI14_17680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_17685 PF08241 Methyltransferase domain CLI14_17695 PF03193 RsgA GTPase CLI14_17700 PF13007 Transposase C of IS166 homeodomain CLI14_17700 PF13817 IS66 C-terminal element CLI14_17700 PF03050 Transposase IS66 family CLI14_17700 PF13005 zinc-finger binding domain of transposase IS66 CLI14_17730 PF00196 Bacterial regulatory proteins, luxR family CLI14_17735 PF00579 tRNA synthetases class I (W and Y) CLI14_17740 PF00871 Acetokinase family CLI14_17745 PF00005 ABC transporter CLI14_17750 PF01032 FecCD transport family CLI14_17755 PF01032 FecCD transport family CLI14_17760 PF01497 Periplasmic binding protein CLI14_17770 PF01752 Collagenase CLI14_17770 PF04151 Bacterial pre-peptidase C-terminal domain CLI14_17770 PF08453 Peptidase family M9 N-terminal CLI14_17785 PF05547 Immune inhibitor A peptidase M6 CLI14_17785 PF00801 PKD domain CLI14_17790 PF03280 Proteobacterial lipase chaperone protein CLI14_17795 PF00561 alpha/beta hydrolase fold CLI14_17800 PF12563 Hemolytic toxin N terminal CLI14_17800 PF16458 Beta-prism lectin CLI14_17800 PF07968 Leukocidin/Hemolysin toxin family CLI14_17805 PF00657 GDSL-like Lipase/Acylhydrolase CLI14_17810 PF01037 Lrp/AsnC ligand binding domain CLI14_17820 PF00012 Hsp70 protein CLI14_17830 PF07690 Major Facilitator Superfamily CLI14_17840 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLI14_17840 PF00512 His Kinase A (phospho-acceptor) domain CLI14_17840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_17845 PF11849 Domain of unknown function (DUF3369) CLI14_17850 PF12833 Helix-turn-helix domain CLI14_17850 PF02311 AraC-like ligand binding domain CLI14_17855 PF01554 MatE CLI14_17860 PF02743 Cache domain CLI14_17860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_17860 PF00672 HAMP domain CLI14_17865 PF01329 Pterin 4 alpha carbinolamine dehydratase CLI14_17870 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CLI14_17875 PF00501 AMP-binding enzyme CLI14_17875 PF13193 AMP-binding enzyme C-terminal domain CLI14_17880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_17880 PF03466 LysR substrate binding domain CLI14_17890 PF03466 LysR substrate binding domain CLI14_17890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_17900 PF00892 EamA-like transporter family CLI14_17905 PF12464 Maltose acetyltransferase CLI14_17905 PF14602 Hexapeptide repeat of succinyl-transferase CLI14_17910 PF02566 OsmC-like protein CLI14_17915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLI14_17920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLI14_17935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLI14_17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_17950 PF00672 HAMP domain CLI14_17950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLI14_17950 PF00072 Response regulator receiver domain CLI14_17950 PF01627 Hpt domain CLI14_17950 PF00512 His Kinase A (phospho-acceptor) domain CLI14_17955 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLI14_17955 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLI14_17975 PF13520 Amino acid permease CLI14_17980 PF00672 HAMP domain CLI14_17980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_17985 PF00672 HAMP domain CLI14_17985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_17985 PF01627 Hpt domain CLI14_17985 PF00072 Response regulator receiver domain CLI14_17985 PF00512 His Kinase A (phospho-acceptor) domain CLI14_17985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CLI14_17990 PF00072 Response regulator receiver domain CLI14_18000 PF03605 Anaerobic c4-dicarboxylate membrane transporter CLI14_18010 PF00563 EAL domain CLI14_18010 PF00360 Phytochrome region CLI14_18010 PF01590 GAF domain CLI14_18010 PF00990 Diguanylate cyclase, GGDEF domain CLI14_18015 PF04397 LytTr DNA-binding domain CLI14_18015 PF00072 Response regulator receiver domain CLI14_18020 PF06580 Histidine kinase CLI14_18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLI14_18035 PF02687 FtsX-like permease family CLI14_18035 PF12704 MacB-like periplasmic core domain CLI14_18040 PF02687 FtsX-like permease family CLI14_18040 PF00005 ABC transporter CLI14_18040 PF12704 MacB-like periplasmic core domain CLI14_18050 PF00248 Aldo/keto reductase family CLI14_18055 PF00128 Alpha amylase, catalytic domain CLI14_18060 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CLI14_18065 PF12262 Bacterial virulence factor lipase N-terminal CLI14_18070 PF14502 Helix-turn-helix domain CLI14_18070 PF14503 YhfZ C-terminal domain CLI14_18080 PF02126 Phosphotriesterase family CLI14_18085 PF10941 Protein of unknown function DUF2620 CLI14_18090 PF10797 Protein of unknown function CLI14_18095 PF01168 Alanine racemase, N-terminal domain CLI14_18100 PF01676 Metalloenzyme superfamily CLI14_18120 PF00593 TonB dependent receptor CLI14_18120 PF07715 TonB-dependent Receptor Plug Domain CLI14_18125 PF00326 Prolyl oligopeptidase family CLI14_18125 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CLI14_18130 PF00270 DEAD/DEAH box helicase CLI14_18130 PF00271 Helicase conserved C-terminal domain CLI14_18140 PF17969 L,D-transpeptidase C-terminal domain CLI14_18140 PF01476 LysM domain CLI14_18140 PF03734 L,D-transpeptidase catalytic domain CLI14_18145 PF03441 FAD binding domain of DNA photolyase CLI14_18145 PF00875 DNA photolyase CLI14_18150 PF13411 MerR HTH family regulatory protein CLI14_18155 PF08349 Protein of unknown function (DUF1722) CLI14_18160 PF01048 Phosphorylase superfamily CLI14_18175 PF00990 Diguanylate cyclase, GGDEF domain CLI14_18180 PF11742 Protein of unknown function (DUF3302) CLI14_18185 PF00529 HlyD membrane-fusion protein of T1SS CLI14_18185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLI14_18205 PF07238 PilZ domain CLI14_18205 PF12945 Flagellar protein YcgR CLI14_18210 PF03616 Sodium/glutamate symporter CLI14_18230 PF02630 SCO1/SenC CLI14_18240 PF00375 Sodium:dicarboxylate symporter family CLI14_18255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_18255 PF03466 LysR substrate binding domain CLI14_18260 PF01547 Bacterial extracellular solute-binding protein CLI14_18275 PF02264 LamB porin CLI14_18280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLI14_18280 PF00128 Alpha amylase, catalytic domain CLI14_18290 PF08220 DeoR-like helix-turn-helix domain CLI14_18290 PF00455 DeoR C terminal sensor domain CLI14_18295 PF03611 PTS system sugar-specific permease component CLI14_18300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI14_18305 PF00596 Class II Aldolase and Adducin N-terminal domain CLI14_18315 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLI14_18320 PF01261 Xylose isomerase-like TIM barrel CLI14_18330 PF00990 Diguanylate cyclase, GGDEF domain CLI14_18330 PF00563 EAL domain CLI14_18330 PF03707 Bacterial signalling protein N terminal repeat CLI14_18340 PF00664 ABC transporter transmembrane region CLI14_18340 PF00005 ABC transporter CLI14_18345 PF04286 Protein of unknown function (DUF445) CLI14_18350 PF01569 PAP2 superfamily CLI14_18365 PF00672 HAMP domain CLI14_18365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_18365 PF02743 Cache domain CLI14_18380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLI14_18380 PF00672 HAMP domain CLI14_18380 PF02743 Cache domain CLI14_18390 PF00005 ABC transporter CLI14_18395 PF07702 UTRA domain CLI14_18395 PF00392 Bacterial regulatory proteins, gntR family CLI14_18400 PF00704 Glycosyl hydrolases family 18 CLI14_18400 PF08329 Chitinase A, N-terminal domain CLI14_18405 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CLI14_18465 PF04717 Type VI secretion system, phage-baseplate injector CLI14_18465 PF16671 Actin cross-linking domain CLI14_18495 PF17871 AAA lid domain CLI14_18495 PF07724 AAA domain (Cdc48 subfamily) CLI14_18495 PF00004 ATPase family associated with various cellular activities (AAA) CLI14_18495 PF10431 C-terminal, D2-small domain, of ClpB protein CLI14_18545 PF13737 Transposase DDE domain CLI14_18555 PF00849 RNA pseudouridylate synthase CLI14_18565 PF00072 Response regulator receiver domain CLI14_18565 PF00486 Transcriptional regulatory protein, C terminal CLI14_18580 PF16925 Tetracyclin repressor-like, C-terminal domain CLI14_18580 PF00440 Bacterial regulatory proteins, tetR family CLI14_18585 PF00107 Zinc-binding dehydrogenase CLI14_18585 PF16884 N-terminal domain of oxidoreductase CLI14_18595 PF11230 Protein of unknown function (DUF3029) CLI14_18600 PF04055 Radical SAM superfamily CLI14_18610 PF13419 Haloacid dehalogenase-like hydrolase CLI14_18615 PF01042 Endoribonuclease L-PSP CLI14_18620 PF00271 Helicase conserved C-terminal domain CLI14_18620 PF00270 DEAD/DEAH box helicase CLI14_18625 PF07702 UTRA domain CLI14_18625 PF00392 Bacterial regulatory proteins, gntR family CLI14_18640 PF00528 Binding-protein-dependent transport system inner membrane component CLI14_18650 PF00005 ABC transporter CLI14_18650 PF08402 TOBE domain CLI14_18665 PF00005 ABC transporter CLI14_18675 PF00581 Rhodanese-like domain CLI14_18680 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CLI14_18685 PF00563 EAL domain CLI14_18685 PF12792 CSS motif domain associated with EAL CLI14_18690 PF04393 Protein of unknown function (DUF535) CLI14_18695 PF01047 MarR family CLI14_18700 PF00529 HlyD membrane-fusion protein of T1SS CLI14_18700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLI14_18720 PF07681 DoxX CLI14_18725 PF00375 Sodium:dicarboxylate symporter family CLI14_18730 PF03600 Citrate transporter CLI14_18735 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLI14_18740 PF05068 Mannitol repressor CLI14_18745 PF01232 Mannitol dehydrogenase Rossmann domain CLI14_18745 PF08125 Mannitol dehydrogenase C-terminal domain CLI14_18750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLI14_18750 PF02378 Phosphotransferase system, EIIC CLI14_18750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLI14_18755 PF01551 Peptidase family M23 CLI14_18755 PF04225 Opacity-associated protein A LysM-like domain CLI14_18765 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLI14_18780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_18780 PF03466 LysR substrate binding domain CLI14_18790 PF04986 Putative transposase CLI14_18790 PF14319 Transposase zinc-binding domain CLI14_18800 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLI14_18800 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLI14_18815 PF03733 Inner membrane component domain CLI14_18825 PF13460 NAD(P)H-binding CLI14_18830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLI14_18830 PF03466 LysR substrate binding domain CLI14_18850 PF14319 Transposase zinc-binding domain CLI14_18850 PF04986 Putative transposase CLI14_18870 PF03222 Tryptophan/tyrosine permease family CLI14_18875 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLI14_18875 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLI14_18880 PF01709 Transcriptional regulator CLI14_18900 PF04986 Putative transposase CLI14_18900 PF14319 Transposase zinc-binding domain CLI14_18955 PF13737 Transposase DDE domain CLI14_18965 PF00005 ABC transporter CLI14_18970 PF00857 Isochorismatase family CLI14_18970 PF00550 Phosphopantetheine attachment site CLI14_18975 PF13193 AMP-binding enzyme C-terminal domain CLI14_18975 PF00501 AMP-binding enzyme CLI14_18980 PF00425 chorismate binding enzyme CLI14_18985 PF13737 Transposase DDE domain CLI14_18995 PF13007 Transposase C of IS166 homeodomain CLI14_18995 PF13817 IS66 C-terminal element CLI14_18995 PF03050 Transposase IS66 family CLI14_18995 PF13005 zinc-finger binding domain of transposase IS66 CLI14_19035 PF01526 Tn3 transposase DDE domain CLI14_19035 PF13700 Domain of unknown function (DUF4158) CLI14_19040 PF00239 Resolvase, N terminal domain CLI14_19040 PF02796 Helix-turn-helix domain of resolvase CLI14_19050 PF02631 RecX family CLI14_19055 PF13737 Transposase DDE domain CLI14_19065 PF00550 Phosphopantetheine attachment site CLI14_19065 PF00668 Condensation domain CLI14_19065 PF13193 AMP-binding enzyme C-terminal domain CLI14_19065 PF00501 AMP-binding enzyme CLI14_19070 PF13737 Transposase DDE domain CLI14_19075 PF01032 FecCD transport family CLI14_19080 PF01032 FecCD transport family CLI14_19085 PF01497 Periplasmic binding protein CLI14_19090 PF00593 TonB dependent receptor CLI14_19090 PF07715 TonB-dependent Receptor Plug Domain CLI14_19095 PF00668 Condensation domain CLI14_19095 PF13193 AMP-binding enzyme C-terminal domain CLI14_19095 PF00501 AMP-binding enzyme CLI14_19100 PF00975 Thioesterase domain CLI14_19105 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CLI14_19110 PF00550 Phosphopantetheine attachment site CLI14_19110 PF13193 AMP-binding enzyme C-terminal domain CLI14_19110 PF00501 AMP-binding enzyme CLI14_19110 PF00668 Condensation domain CLI14_19115 PF13737 Transposase DDE domain CLI14_19125 PF00282 Pyridoxal-dependent decarboxylase conserved domain CLI14_19130 PF00005 ABC transporter CLI14_19135 PF00664 ABC transporter transmembrane region CLI14_19135 PF00005 ABC transporter CLI14_19150 PF13005 zinc-finger binding domain of transposase IS66 CLI14_19150 PF13007 Transposase C of IS166 homeodomain CLI14_19150 PF03050 Transposase IS66 family CLI14_19150 PF13817 IS66 C-terminal element CLI14_19165 PF14319 Transposase zinc-binding domain CLI14_19165 PF04986 Putative transposase CLI14_19175 PF05973 Phage derived protein Gp49-like (DUF891) CLI14_19195 PF06613 KorB C-terminal beta-barrel domain CLI14_19195 PF08535 KorB domain CLI14_19195 PF02195 ParB-like nuclease domain CLI14_19200 PF13614 AAA domain