locus-tag class description CMV05_00005 PF00258 Flavodoxin CMV05_00010 PF12631 MnmE helical domain CMV05_00010 PF01926 50S ribosome-binding GTPase CMV05_00010 PF10396 GTP-binding protein TrmE N-terminus CMV05_00015 PF02096 60Kd inner membrane protein CMV05_00015 PF14849 YidC periplasmic domain CMV05_00020 PF01809 Putative membrane protein insertion efficiency factor CMV05_00025 PF00825 Ribonuclease P CMV05_00030 PF00468 Ribosomal protein L34 CMV05_00035 PF00005 ABC transporter CMV05_00040 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_00045 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMV05_00050 PF11638 DnaA N-terminal domain CMV05_00050 PF08299 Bacterial dnaA protein helix-turn-helix CMV05_00050 PF00308 Bacterial dnaA protein CMV05_00055 PF00712 DNA polymerase III beta subunit, N-terminal domain CMV05_00055 PF02767 DNA polymerase III beta subunit, central domain CMV05_00055 PF02768 DNA polymerase III beta subunit, C-terminal domain CMV05_00060 PF02463 RecF/RecN/SMC N terminal domain CMV05_00065 PF01751 Toprim domain CMV05_00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_00065 PF18053 DNA gyrase B subunit insert domain CMV05_00065 PF00986 DNA gyrase B subunit, carboxyl terminus CMV05_00065 PF00204 DNA gyrase B CMV05_00085 PF13358 DDE superfamily endonuclease CMV05_00090 PF00011 Hsp20/alpha crystallin family CMV05_00095 PF01609 Transposase DDE domain CMV05_00095 PF13006 Insertion element 4 transposase N-terminal CMV05_00100 PF00155 Aminotransferase class I and II CMV05_00105 PF02092 Glycyl-tRNA synthetase beta subunit CMV05_00105 PF05746 DALR anticodon binding domain CMV05_00110 PF02091 Glycyl-tRNA synthetase alpha subunit CMV05_00115 PF01169 Uncharacterized protein family UPF0016 CMV05_00125 PF01206 Sulfurtransferase TusA CMV05_00135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_00135 PF03466 LysR substrate binding domain CMV05_00140 PF00107 Zinc-binding dehydrogenase CMV05_00140 PF08240 Alcohol dehydrogenase GroES-like domain CMV05_00145 PF00291 Pyridoxal-phosphate dependent enzyme CMV05_00145 PF00585 C-terminal regulatory domain of Threonine dehydratase CMV05_00150 PF00920 Dehydratase family CMV05_00155 PF01063 Amino-transferase class IV CMV05_00165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CMV05_00165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CMV05_00165 PF00205 Thiamine pyrophosphate enzyme, central domain CMV05_00170 PF01078 Magnesium chelatase, subunit ChlI CMV05_00170 PF13335 Magnesium chelatase, subunit ChlI C-terminal CMV05_00175 PF13358 DDE superfamily endonuclease CMV05_00195 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_00195 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_00195 PF01610 Transposase CMV05_00205 PF01610 Transposase CMV05_00205 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_00205 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_00230 PF01609 Transposase DDE domain CMV05_00235 PF01323 DSBA-like thioredoxin domain CMV05_00240 PF01636 Phosphotransferase enzyme family CMV05_00245 PF13746 4Fe-4S dicluster domain CMV05_00245 PF12801 4Fe-4S binding domain CMV05_00245 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CMV05_00255 PF06288 Protein of unknown function (DUF1040) CMV05_00265 PF03006 Haemolysin-III related CMV05_00275 PF02386 Cation transport protein CMV05_00280 PF02080 TrkA-C domain CMV05_00280 PF02254 TrkA-N domain CMV05_00285 PF01189 16S rRNA methyltransferase RsmB/F CMV05_00285 PF01029 NusB family CMV05_00290 PF02911 Formyl transferase, C-terminal domain CMV05_00290 PF00551 Formyl transferase CMV05_00295 PF01327 Polypeptide deformylase CMV05_00300 PF01476 LysM domain CMV05_00305 PF17782 DprA winged helix domain CMV05_00305 PF02481 DNA recombination-mediator protein A CMV05_00310 PF04361 Protein of unknown function (DUF494) CMV05_00315 PF01396 Topoisomerase DNA binding C4 zinc finger CMV05_00320 PF02222 ATP-grasp domain CMV05_00320 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CMV05_00325 PF00731 AIR carboxylase CMV05_00330 PF01300 Telomere recombination CMV05_00335 PF01218 Coproporphyrinogen III oxidase CMV05_00340 PF08501 Shikimate dehydrogenase substrate binding domain CMV05_00340 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CMV05_00340 PF01488 Shikimate / quinate 5-dehydrogenase CMV05_00345 PF07369 Protein of unknown function (DUF1488) CMV05_00350 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_00385 PF07219 HemY protein N-terminus CMV05_00390 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CMV05_00395 PF02602 Uroporphyrinogen-III synthase HemD CMV05_00400 PF03900 Porphobilinogen deaminase, C-terminal domain CMV05_00400 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CMV05_00405 PF12633 Adenylate cyclase NT domain CMV05_00405 PF01295 Adenylate cyclase, class-I CMV05_00410 PF01491 Frataxin-like domain CMV05_00420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CMV05_00420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CMV05_00425 PF01678 Diaminopimelate epimerase CMV05_00435 PF00589 Phage integrase family CMV05_00435 PF02899 Phage integrase, N-terminal SAM-like domain CMV05_00440 PF13419 Haloacid dehalogenase-like hydrolase CMV05_00460 PF12146 Serine aminopeptidase, S33 CMV05_00465 PF01810 LysE type translocator CMV05_00470 PF00563 EAL domain CMV05_00470 PF08668 HDOD domain CMV05_00475 PF00210 Ferritin-like domain CMV05_00505 PF01914 MarC family integral membrane protein CMV05_00575 PF02881 SRP54-type protein, helical bundle domain CMV05_00575 PF00448 SRP54-type protein, GTPase domain CMV05_00580 PF00005 ABC transporter CMV05_00585 PF18075 FtsX extracellular domain CMV05_00590 PF04545 Sigma-70, region 4 CMV05_00590 PF00140 Sigma-70 factor, region 1.2 CMV05_00590 PF04542 Sigma-70 region 2 CMV05_00595 PF00581 Rhodanese-like domain CMV05_00600 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CMV05_00600 PF01694 Rhomboid family CMV05_00605 PF03748 Flagellar basal body-associated protein FliL CMV05_00610 PF04345 Chorismate lyase CMV05_00615 PF01040 UbiA prenyltransferase family CMV05_00620 PF01553 Acyltransferase CMV05_00625 PF00717 Peptidase S24-like CMV05_00625 PF01726 LexA DNA binding domain CMV05_00635 PF01554 MatE CMV05_00645 PF00440 Bacterial regulatory proteins, tetR family CMV05_00650 PF07226 Protein of unknown function (DUF1422) CMV05_00660 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CMV05_00660 PF02929 Beta galactosidase small chain CMV05_00660 PF02837 Glycosyl hydrolases family 2, sugar binding domain CMV05_00660 PF00703 Glycosyl hydrolases family 2 CMV05_00660 PF16353 Domain of unknown function(DUF4981) CMV05_00670 PF05958 tRNA (Uracil-5-)-methyltransferase CMV05_00675 PF07715 TonB-dependent Receptor Plug Domain CMV05_00675 PF00593 TonB dependent receptor CMV05_00680 PF01177 Asp/Glu/Hydantoin racemase CMV05_00715 PF00962 Adenosine/AMP deaminase CMV05_00720 PF13188 PAS domain CMV05_00720 PF03707 Bacterial signalling protein N terminal repeat CMV05_00720 PF00563 EAL domain CMV05_00720 PF00990 Diguanylate cyclase, GGDEF domain CMV05_00725 PF02954 Bacterial regulatory protein, Fis family CMV05_00725 PF00158 Sigma-54 interaction domain CMV05_00725 PF00072 Response regulator receiver domain CMV05_00730 PF00989 PAS fold CMV05_00730 PF00512 His Kinase A (phospho-acceptor) domain CMV05_00730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_00740 PF00120 Glutamine synthetase, catalytic domain CMV05_00740 PF03951 Glutamine synthetase, beta-Grasp domain CMV05_00750 PF03631 Virulence factor BrkB CMV05_00755 PF02580 D-Tyr-tRNA(Tyr) deacylase CMV05_00760 PF09500 Putative thioesterase (yiiD_Cterm) CMV05_00760 PF00583 Acetyltransferase (GNAT) family CMV05_00770 PF01293 Phosphoenolpyruvate carboxykinase CMV05_00775 PF01430 Hsp33 protein CMV05_00780 PF01479 S4 domain CMV05_00785 PF11356 Type II secretion system protein C CMV05_00790 PF00263 Bacterial type II and III secretion system protein CMV05_00790 PF03958 Bacterial type II/III secretion system short domain CMV05_00795 PF00437 Type II/IV secretion system protein CMV05_00800 PF00482 Type II secretion system (T2SS), protein F CMV05_00805 PF07963 Prokaryotic N-terminal methylation motif CMV05_00805 PF08334 Type II secretion system (T2SS), protein G CMV05_00810 PF12019 Type II transport protein GspH CMV05_00815 PF02501 Type II secretion system (T2SS), protein I CMV05_00815 PF07963 Prokaryotic N-terminal methylation motif CMV05_00820 PF11612 Type II secretion system (T2SS), protein J CMV05_00820 PF07963 Prokaryotic N-terminal methylation motif CMV05_00825 PF03934 Type II secretion system (T2SS), protein K CMV05_00830 PF12693 GspL periplasmic domain CMV05_00830 PF05134 Type II secretion system (T2SS), protein L CMV05_00835 PF04612 Type II secretion system (T2SS), protein M CMV05_00840 PF01203 Type II secretion system (T2SS), protein N CMV05_00845 PF00459 Inositol monophosphatase family CMV05_00850 PF00293 NUDIX domain CMV05_00855 PF01521 Iron-sulphur cluster biosynthesis CMV05_00855 PF01106 NifU-like domain CMV05_00860 PF00156 Phosphoribosyl transferase domain CMV05_00865 PF00561 alpha/beta hydrolase fold CMV05_00875 PF17674 HHH domain CMV05_00875 PF00575 S1 RNA binding domain CMV05_00875 PF09371 Tex-like protein N-terminal domain CMV05_00875 PF16921 Tex protein YqgF-like domain CMV05_00880 PF03449 Transcription elongation factor, N-terminal CMV05_00880 PF01272 Transcription elongation factor, GreA/GreB, C-term CMV05_00890 PF06942 GlpM protein CMV05_00900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_00900 PF03466 LysR substrate binding domain CMV05_00910 PF00881 Nitroreductase family CMV05_00920 PF00072 Response regulator receiver domain CMV05_00920 PF00486 Transcriptional regulatory protein, C terminal CMV05_00925 PF00672 HAMP domain CMV05_00925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_00925 PF00512 His Kinase A (phospho-acceptor) domain CMV05_00930 PF00860 Permease family CMV05_00935 PF17191 RecG wedge domain CMV05_00935 PF00270 DEAD/DEAH box helicase CMV05_00935 PF00271 Helicase conserved C-terminal domain CMV05_00940 PF13291 ACT domain CMV05_00940 PF02824 TGS domain CMV05_00940 PF04607 Region found in RelA / SpoT proteins CMV05_00945 PF01192 RNA polymerase Rpb6 CMV05_00950 PF00625 Guanylate kinase CMV05_00955 PF02592 Putative vitamin uptake transporter CMV05_00960 PF02541 Ppx/GppA phosphatase family CMV05_00965 PF00270 DEAD/DEAH box helicase CMV05_00965 PF00271 Helicase conserved C-terminal domain CMV05_00970 PF00085 Thioredoxin CMV05_00975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CMV05_00975 PF07498 Rho termination factor, N-terminal domain CMV05_00975 PF07497 Rho termination factor, RNA-binding domain CMV05_00985 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CMV05_00990 PF00111 2Fe-2S iron-sulfur cluster binding domain CMV05_00990 PF00175 Oxidoreductase NAD-binding domain CMV05_00990 PF00970 Oxidoreductase FAD-binding domain CMV05_00995 PF00175 Oxidoreductase NAD-binding domain CMV05_01035 PF13091 PLD-like domain CMV05_01045 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CMV05_01045 PF01565 FAD binding domain CMV05_01050 PF08279 HTH domain CMV05_01050 PF03099 Biotin/lipoate A/B protein ligase family CMV05_01050 PF02237 Biotin protein ligase C terminal domain CMV05_01055 PF00485 Phosphoribulokinase / Uridine kinase family CMV05_01080 PF03144 Elongation factor Tu domain 2 CMV05_01080 PF00009 Elongation factor Tu GTP binding domain CMV05_01080 PF03143 Elongation factor Tu C-terminal domain CMV05_01085 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CMV05_01090 PF02357 Transcription termination factor nusG CMV05_01090 PF00467 KOW motif CMV05_01095 PF03946 Ribosomal protein L11, N-terminal domain CMV05_01095 PF00298 Ribosomal protein L11, RNA binding domain CMV05_01100 PF00687 Ribosomal protein L1p/L10e family CMV05_01105 PF00466 Ribosomal protein L10 CMV05_01110 PF00542 Ribosomal protein L7/L12 C-terminal domain CMV05_01110 PF16320 Ribosomal protein L7/L12 dimerisation domain CMV05_01115 PF10385 RNA polymerase beta subunit external 1 domain CMV05_01115 PF04565 RNA polymerase Rpb2, domain 3 CMV05_01115 PF00562 RNA polymerase Rpb2, domain 6 CMV05_01115 PF04560 RNA polymerase Rpb2, domain 7 CMV05_01115 PF04563 RNA polymerase beta subunit CMV05_01115 PF04561 RNA polymerase Rpb2, domain 2 CMV05_01120 PF00623 RNA polymerase Rpb1, domain 2 CMV05_01120 PF04983 RNA polymerase Rpb1, domain 3 CMV05_01120 PF04997 RNA polymerase Rpb1, domain 1 CMV05_01120 PF05000 RNA polymerase Rpb1, domain 4 CMV05_01120 PF04998 RNA polymerase Rpb1, domain 5 CMV05_01125 PF01609 Transposase DDE domain CMV05_01125 PF13006 Insertion element 4 transposase N-terminal CMV05_01130 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CMV05_01135 PF09297 NADH pyrophosphatase zinc ribbon domain CMV05_01135 PF00293 NUDIX domain CMV05_01140 PF01208 Uroporphyrinogen decarboxylase (URO-D) CMV05_01145 PF08360 QacR-like protein, C-terminal region CMV05_01145 PF00440 Bacterial regulatory proteins, tetR family CMV05_01155 PF01551 Peptidase family M23 CMV05_01160 PF01676 Metalloenzyme superfamily CMV05_01160 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CMV05_01175 PF03600 Citrate transporter CMV05_01175 PF02080 TrkA-C domain CMV05_01180 PF02666 Phosphatidylserine decarboxylase CMV05_01185 PF03193 RsgA GTPase CMV05_01190 PF00929 Exonuclease CMV05_01235 PF08331 Domain of unknown function (DUF1730) CMV05_01240 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CMV05_01245 PF01520 N-acetylmuramoyl-L-alanine amidase CMV05_01250 PF01119 DNA mismatch repair protein, C-terminal domain CMV05_01250 PF08676 MutL C terminal dimerisation domain CMV05_01260 PF17209 Hfq protein CMV05_01265 PF16360 GTP-binding GTPase Middle Region CMV05_01265 PF13167 GTP-binding GTPase N-terminal CMV05_01265 PF01926 50S ribosome-binding GTPase CMV05_01270 PF01145 SPFH domain / Band 7 family CMV05_01270 PF12221 Bacterial membrane protein N terminal CMV05_01275 PF01145 SPFH domain / Band 7 family CMV05_01280 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CMV05_01285 PF04102 SlyX CMV05_01295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CMV05_01295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CMV05_01300 PF08348 YheO-like PAS domain CMV05_01300 PF13309 HTH domain CMV05_01305 PF02635 DsrE/DsrF-like family CMV05_01310 PF02635 DsrE/DsrF-like family CMV05_01315 PF04077 DsrH like protein CMV05_01320 PF00164 Ribosomal protein S12/S23 CMV05_01325 PF00177 Ribosomal protein S7p/S5e CMV05_01330 PF14492 Elongation Factor G, domain II CMV05_01330 PF03144 Elongation factor Tu domain 2 CMV05_01330 PF00009 Elongation factor Tu GTP binding domain CMV05_01330 PF03764 Elongation factor G, domain IV CMV05_01330 PF00679 Elongation factor G C-terminus CMV05_01335 PF03143 Elongation factor Tu C-terminal domain CMV05_01335 PF03144 Elongation factor Tu domain 2 CMV05_01335 PF00009 Elongation factor Tu GTP binding domain CMV05_01340 PF14706 Transposase DNA-binding CMV05_01340 PF02281 Transposase Tn5 dimerisation domain CMV05_01340 PF01609 Transposase DDE domain CMV05_01345 PF01250 Ribosomal protein S6 CMV05_01350 PF00436 Single-strand binding protein family CMV05_01355 PF01084 Ribosomal protein S18 CMV05_01360 PF03948 Ribosomal protein L9, C-terminal domain CMV05_01360 PF01281 Ribosomal protein L9, N-terminal domain CMV05_01370 PF00772 DnaB-like helicase N terminal domain CMV05_01370 PF03796 DnaB-like helicase C terminal domain CMV05_01375 PF01168 Alanine racemase, N-terminal domain CMV05_01375 PF00842 Alanine racemase, C-terminal domain CMV05_01380 PF00342 Phosphoglucose isomerase CMV05_01390 PF01475 Ferric uptake regulator family CMV05_01395 PF01207 Dihydrouridine synthase (Dus) CMV05_01415 PF13808 DDE_Tnp_1-associated CMV05_01415 PF01609 Transposase DDE domain CMV05_01425 PF00175 Oxidoreductase NAD-binding domain CMV05_01425 PF00667 FAD binding domain CMV05_01425 PF00258 Flavodoxin CMV05_01430 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CMV05_01430 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CMV05_01435 PF01507 Phosphoadenosine phosphosulfate reductase family CMV05_01540 PF00999 Sodium/hydrogen exchanger family CMV05_01545 PF00809 Pterin binding enzyme CMV05_01545 PF02965 Vitamin B12 dependent methionine synthase, activation domain CMV05_01545 PF02607 B12 binding domain CMV05_01545 PF02310 B12 binding domain CMV05_01545 PF02574 Homocysteine S-methyltransferase CMV05_01550 PF01610 Transposase CMV05_01550 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_01550 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_01555 PF00696 Amino acid kinase family CMV05_01555 PF01842 ACT domain CMV05_01560 PF00266 Aminotransferase class-V CMV05_01575 PF01769 Divalent cation transporter CMV05_01575 PF03448 MgtE intracellular N domain CMV05_01575 PF00571 CBS domain CMV05_01585 PF00005 ABC transporter CMV05_01585 PF17755 UvrA DNA-binding domain CMV05_01585 PF17760 UvrA interaction domain CMV05_01590 PF00483 Nucleotidyl transferase CMV05_01595 PF00196 Bacterial regulatory proteins, luxR family CMV05_01600 PF00436 Single-strand binding protein family CMV05_01605 PF00990 Diguanylate cyclase, GGDEF domain CMV05_01605 PF17157 Gammaproteobacterial periplasmic sensor domain CMV05_01605 PF00563 EAL domain CMV05_01625 PF00263 Bacterial type II and III secretion system protein CMV05_01625 PF03958 Bacterial type II/III secretion system short domain CMV05_01630 PF01471 Putative peptidoglycan binding domain CMV05_01630 PF13401 AAA domain CMV05_01640 PF00437 Type II/IV secretion system protein CMV05_01640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CMV05_01645 PF00482 Type II secretion system (T2SS), protein F CMV05_01655 PF07963 Prokaryotic N-terminal methylation motif CMV05_01655 PF00114 Pilin (bacterial filament) CMV05_01660 PF07963 Prokaryotic N-terminal methylation motif CMV05_01660 PF08334 Type II secretion system (T2SS), protein G CMV05_01695 PF04085 rod shape-determining protein MreC CMV05_01700 PF04093 rod shape-determining protein MreD CMV05_01705 PF02545 Maf-like protein CMV05_01710 PF00575 S1 RNA binding domain CMV05_01710 PF10150 Ribonuclease E/G family CMV05_01715 PF13502 AsmA-like C-terminal region CMV05_01715 PF13116 Protein of unknown function CMV05_01720 PF00795 Carbon-nitrogen hydrolase CMV05_01725 PF01523 Putative modulator of DNA gyrase CMV05_01735 PF06877 Regulator of ribonuclease activity B CMV05_01740 PF01526 Tn3 transposase DDE domain CMV05_01740 PF13700 Domain of unknown function (DUF4158) CMV05_01745 PF00239 Resolvase, N terminal domain CMV05_01745 PF02796 Helix-turn-helix domain of resolvase CMV05_01755 PF02631 RecX family CMV05_01770 PF00582 Universal stress protein family CMV05_01780 PF16868 NMT1-like family CMV05_01795 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CMV05_01795 PF00056 lactate/malate dehydrogenase, NAD binding domain CMV05_01800 PF13520 Amino acid permease CMV05_01805 PF01609 Transposase DDE domain CMV05_01805 PF13006 Insertion element 4 transposase N-terminal CMV05_01810 PF00348 Polyprenyl synthetase CMV05_01825 PF01016 Ribosomal L27 protein CMV05_01830 PF01018 GTP1/OBG CMV05_01830 PF01926 50S ribosome-binding GTPase CMV05_01835 PF06738 Putative threonine/serine exporter CMV05_01840 PF12821 Threonine/Serine exporter, ThrE CMV05_01845 PF00186 Dihydrofolate reductase CMV05_01850 PF00149 Calcineurin-like phosphoesterase CMV05_01855 PF04379 ApaG domain CMV05_01860 PF00398 Ribosomal RNA adenine dimethylase CMV05_01865 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CMV05_01870 PF09312 SurA N-terminal domain CMV05_01875 PF03968 OstA-like protein CMV05_01875 PF04453 LPS transport system D CMV05_01880 PF00226 DnaJ domain CMV05_01880 PF05099 Tellurite resistance protein TerB CMV05_01920 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CMV05_01920 PF01464 Transglycosylase SLT domain CMV05_01925 PF04362 Bacterial Fe(2+) trafficking CMV05_01930 PF14815 NUDIX domain CMV05_01930 PF00730 HhH-GPD superfamily base excision DNA repair protein CMV05_01930 PF00633 Helix-hairpin-helix motif CMV05_01935 PF02390 Putative methyltransferase CMV05_01940 PF04960 Glutaminase CMV05_01945 PF06969 HemN C-terminal domain CMV05_01945 PF04055 Radical SAM superfamily CMV05_01950 PF01725 Ham1 family CMV05_01960 PF02594 Uncharacterised ACR, YggU family COG1872 CMV05_01965 PF02325 YGGT family CMV05_01970 PF14748 Pyrroline-5-carboxylate reductase dimerisation CMV05_01970 PF03807 NADP oxidoreductase coenzyme F420-dependent CMV05_01975 PF01168 Alanine racemase, N-terminal domain CMV05_01980 PF00437 Type II/IV secretion system protein CMV05_01985 PF00437 Type II/IV secretion system protein CMV05_01990 PF03652 Holliday junction resolvase CMV05_01995 PF02622 Uncharacterized ACR, COG1678 CMV05_02000 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CMV05_02000 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CMV05_02005 PF04452 RNA methyltransferase CMV05_02015 PF10263 SprT-like family CMV05_02015 PF17283 SprT-like zinc ribbon domain CMV05_02020 PF02773 S-adenosylmethionine synthetase, C-terminal domain CMV05_02020 PF00438 S-adenosylmethionine synthetase, N-terminal domain CMV05_02020 PF02772 S-adenosylmethionine synthetase, central domain CMV05_02025 PF02779 Transketolase, pyrimidine binding domain CMV05_02025 PF02780 Transketolase, C-terminal domain CMV05_02025 PF00456 Transketolase, thiamine diphosphate binding domain CMV05_02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_02030 PF03466 LysR substrate binding domain CMV05_02035 PF00593 TonB dependent receptor CMV05_02035 PF07715 TonB-dependent Receptor Plug Domain CMV05_02040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CMV05_02040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CMV05_02045 PF00162 Phosphoglycerate kinase CMV05_02055 PF01116 Fructose-bisphosphate aldolase class-II CMV05_02060 PF05552 Conserved TM helix CMV05_02060 PF00924 Mechanosensitive ion channel CMV05_02065 PF01810 LysE type translocator CMV05_02070 PF03466 LysR substrate binding domain CMV05_02070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_02080 PF17158 Membrane-associated sensor, integral membrane domain CMV05_02080 PF00990 Diguanylate cyclase, GGDEF domain CMV05_02085 PF02887 Pyruvate kinase, alpha/beta domain CMV05_02085 PF00224 Pyruvate kinase, barrel domain CMV05_02090 PF00455 DeoR C terminal sensor domain CMV05_02090 PF08220 DeoR-like helix-turn-helix domain CMV05_02095 PF01380 SIS domain CMV05_02120 PF08721 TnsA endonuclease C terminal CMV05_02120 PF08722 TnsA endonuclease N terminal CMV05_02125 PF00665 Integrase core domain CMV05_02130 PF13401 AAA domain CMV05_02130 PF11426 Tn7 transposition regulator TnsC CMV05_02135 PF15978 Tn7-like transposition protein D CMV05_02135 PF06527 TniQ CMV05_02140 PF18623 TnsE C-terminal domain CMV05_02170 PF01580 FtsK/SpoIIIE family CMV05_02170 PF17854 FtsK alpha domain CMV05_02170 PF09397 Ftsk gamma domain CMV05_02175 PF08721 TnsA endonuclease C terminal CMV05_02175 PF08722 TnsA endonuclease N terminal CMV05_02180 PF00665 Integrase core domain CMV05_02190 PF01610 Transposase CMV05_02190 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_02190 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_02225 PF04545 Sigma-70, region 4 CMV05_02225 PF04546 Sigma-70, non-essential region CMV05_02225 PF03979 Sigma-70 factor, region 1.1 CMV05_02225 PF00140 Sigma-70 factor, region 1.2 CMV05_02225 PF04539 Sigma-70 region 3 CMV05_02225 PF04542 Sigma-70 region 2 CMV05_02230 PF10410 DnaB-helicase binding domain of primase CMV05_02230 PF01807 CHC2 zinc finger CMV05_02230 PF08275 DNA primase catalytic core, N-terminal domain CMV05_02230 PF08278 DNA primase DnaG DnaB-binding CMV05_02235 PF09424 Yqey-like protein CMV05_02255 PF01609 Transposase DDE domain CMV05_02255 PF13006 Insertion element 4 transposase N-terminal CMV05_02260 PF02660 Glycerol-3-phosphate acyltransferase CMV05_02265 PF02152 Dihydroneopterin aldolase CMV05_02270 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CMV05_02275 PF02673 Bacitracin resistance protein BacA CMV05_02280 PF04977 Septum formation initiator CMV05_02285 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CMV05_02290 PF02542 YgbB family CMV05_02295 PF01142 tRNA pseudouridine synthase D (TruD) CMV05_02300 PF01975 Survival protein SurE CMV05_02310 PF01476 LysM domain CMV05_02310 PF01551 Peptidase family M23 CMV05_02315 PF00140 Sigma-70 factor, region 1.2 CMV05_02315 PF04542 Sigma-70 region 2 CMV05_02315 PF04545 Sigma-70, region 4 CMV05_02315 PF04539 Sigma-70 region 3 CMV05_02320 PF13005 zinc-finger binding domain of transposase IS66 CMV05_02320 PF13007 Transposase C of IS166 homeodomain CMV05_02320 PF13817 IS66 C-terminal element CMV05_02320 PF03050 Transposase IS66 family CMV05_02335 PF01624 MutS domain I CMV05_02335 PF05188 MutS domain II CMV05_02335 PF05192 MutS domain III CMV05_02335 PF05190 MutS family domain IV CMV05_02335 PF00488 MutS domain V CMV05_02340 PF00291 Pyridoxal-phosphate dependent enzyme CMV05_02350 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_02355 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_02360 PF12857 TOBE-like domain CMV05_02360 PF00005 ABC transporter CMV05_02365 PF02464 Competence-damaged protein CMV05_02370 PF00154 recA bacterial DNA recombination protein CMV05_02375 PF02631 RecX family CMV05_02380 PF02272 DHHA1 domain CMV05_02380 PF01411 tRNA synthetases class II (A) CMV05_02380 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CMV05_02385 PF13840 ACT domain CMV05_02385 PF00696 Amino acid kinase family CMV05_02385 PF01842 ACT domain CMV05_02435 PF04277 Oxaloacetate decarboxylase, gamma chain CMV05_02440 PF00364 Biotin-requiring enzyme CMV05_02440 PF02436 Conserved carboxylase domain CMV05_02440 PF00682 HMGL-like CMV05_02445 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CMV05_02450 PF01609 Transposase DDE domain CMV05_02450 PF02281 Transposase Tn5 dimerisation domain CMV05_02450 PF14706 Transposase DNA-binding CMV05_02455 PF00107 Zinc-binding dehydrogenase CMV05_02455 PF08240 Alcohol dehydrogenase GroES-like domain CMV05_02460 PF09335 SNARE associated Golgi protein CMV05_02465 PF05193 Peptidase M16 inactive domain CMV05_02465 PF00675 Insulinase (Peptidase family M16) CMV05_02470 PF04262 Glutamate-cysteine ligase CMV05_02480 PF03471 Transporter associated domain CMV05_02480 PF01595 Cyclin M transmembrane N-terminal domain CMV05_02480 PF00571 CBS domain CMV05_02485 PF01578 Cytochrome C assembly protein CMV05_02490 PF02978 Signal peptide binding domain CMV05_02490 PF02881 SRP54-type protein, helical bundle domain CMV05_02490 PF00448 SRP54-type protein, GTPase domain CMV05_02505 PF01746 tRNA (Guanine-1)-methyltransferase CMV05_02510 PF01245 Ribosomal protein L19 CMV05_02515 PF03884 DNA gyrase inhibitor YacG CMV05_02520 PF07072 Cell division protein CMV05_02525 PF01121 Dephospho-CoA kinase CMV05_02530 PF06750 Bacterial Peptidase A24 N-terminal domain CMV05_02530 PF01478 Type IV leader peptidase family CMV05_02535 PF00482 Type II secretion system (T2SS), protein F CMV05_02540 PF00437 Type II/IV secretion system protein CMV05_02540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CMV05_02545 PF07963 Prokaryotic N-terminal methylation motif CMV05_02545 PF00114 Pilin (bacterial filament) CMV05_02550 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CMV05_02550 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CMV05_02555 PF01510 N-acetylmuramoyl-L-alanine amidase CMV05_02560 PF00258 Flavodoxin CMV05_02565 PF02899 Phage integrase, N-terminal SAM-like domain CMV05_02565 PF00589 Phage integrase family CMV05_02570 PF13098 Thioredoxin-like domain CMV05_02570 PF10411 Disulfide bond isomerase protein N-terminus CMV05_02575 PF17768 RecJ OB domain CMV05_02575 PF01368 DHH family CMV05_02575 PF02272 DHHA1 domain CMV05_02580 PF14706 Transposase DNA-binding CMV05_02580 PF02281 Transposase Tn5 dimerisation domain CMV05_02580 PF01609 Transposase DDE domain CMV05_02585 PF13006 Insertion element 4 transposase N-terminal CMV05_02585 PF01609 Transposase DDE domain CMV05_02590 PF07729 FCD domain CMV05_02590 PF00392 Bacterial regulatory proteins, gntR family CMV05_02595 PF17831 Pyruvate dehydrogenase E1 component middle domain CMV05_02595 PF00456 Transketolase, thiamine diphosphate binding domain CMV05_02600 PF00364 Biotin-requiring enzyme CMV05_02600 PF02817 e3 binding domain CMV05_02600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CMV05_02605 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_02605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMV05_02630 PF00156 Phosphoribosyl transferase domain CMV05_02635 PF00484 Carbonic anhydrase CMV05_02640 PF00916 Sulfate permease family CMV05_02640 PF01740 STAS domain CMV05_02645 PF00005 ABC transporter CMV05_02650 PF01061 ABC-2 type transporter CMV05_02660 PF02569 Pantoate-beta-alanine ligase CMV05_02665 PF02548 Ketopantoate hydroxymethyltransferase CMV05_02670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CMV05_02675 PF12627 Probable RNA and SrmB- binding site of polymerase A CMV05_02675 PF12626 Polymerase A arginine-rich C-terminus CMV05_02675 PF01743 Poly A polymerase head domain CMV05_02680 PF00749 tRNA synthetases class I (E and Q), catalytic domain CMV05_02685 PF01258 Prokaryotic dksA/traR C4-type zinc finger CMV05_02690 PF17746 SfsA N-terminal OB domain CMV05_02690 PF03749 Sugar fermentation stimulation protein RE domain CMV05_02695 PF00271 Helicase conserved C-terminal domain CMV05_02695 PF04408 Helicase associated domain (HA2) CMV05_02695 PF00270 DEAD/DEAH box helicase CMV05_02695 PF08482 ATP-dependent helicase C-terminal CMV05_02700 PF00912 Transglycosylase CMV05_02700 PF00905 Penicillin binding protein transpeptidase domain CMV05_02700 PF14814 Bifunctional transglycosylase second domain CMV05_02705 PF01734 Patatin-like phospholipase CMV05_02710 PF11791 Aconitate B N-terminal domain CMV05_02710 PF06434 Aconitate hydratase 2 N-terminus CMV05_02710 PF00330 Aconitase family (aconitate hydratase) CMV05_02715 PF02595 Glycerate kinase family CMV05_02720 PF02447 GntP family permease CMV05_02725 PF17853 GGDEF-like domain CMV05_02725 PF05651 Putative sugar diacid recognition CMV05_02725 PF13556 PucR C-terminal helix-turn-helix domain CMV05_02730 PF06062 Uncharacterised protein family (UPF0231) CMV05_02735 PF00543 Nitrogen regulatory protein P-II CMV05_02745 PF13416 Bacterial extracellular solute-binding protein CMV05_02755 PF00005 ABC transporter CMV05_02755 PF08402 TOBE domain CMV05_02760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMV05_02760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CMV05_02760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CMV05_02765 PF06165 Glycosyltransferase family 36 CMV05_02765 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CMV05_02770 PF00728 Glycosyl hydrolase family 20, catalytic domain CMV05_02770 PF02838 Glycosyl hydrolase family 20, domain 2 CMV05_02775 PF01869 BadF/BadG/BcrA/BcrD ATPase family CMV05_02785 PF00005 ABC transporter CMV05_02785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMV05_02790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMV05_02790 PF00005 ABC transporter CMV05_02795 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_02795 PF12911 N-terminal TM domain of oligopeptide transport permease C CMV05_02800 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_02805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMV05_02810 PF09308 LuxQ, periplasmic CMV05_02810 PF00512 His Kinase A (phospho-acceptor) domain CMV05_02810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_02810 PF00072 Response regulator receiver domain CMV05_02815 PF08468 Methyltransferase small domain N-terminal CMV05_02815 PF05175 Methyltransferase small domain CMV05_02820 PF01594 AI-2E family transporter CMV05_02825 PF00202 Aminotransferase class-III CMV05_02830 PF01521 Iron-sulphur cluster biosynthesis CMV05_02840 PF00873 AcrB/AcrD/AcrF family CMV05_02845 PF01476 LysM domain CMV05_02845 PF01551 Peptidase family M23 CMV05_02845 PF08525 Opacity-associated protein A N-terminal motif CMV05_02850 PF00579 tRNA synthetases class I (W and Y) CMV05_02850 PF01479 S4 domain CMV05_02860 PF01769 Divalent cation transporter CMV05_02860 PF03448 MgtE intracellular N domain CMV05_02860 PF00571 CBS domain CMV05_02865 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CMV05_02870 PF13609 Gram-negative porin CMV05_02875 PF01272 Transcription elongation factor, GreA/GreB, C-term CMV05_02875 PF03449 Transcription elongation factor, N-terminal CMV05_02880 PF01985 CRS1 / YhbY (CRM) domain CMV05_02885 PF01728 FtsJ-like methyltransferase CMV05_02890 PF01434 Peptidase family M41 CMV05_02890 PF06480 FtsH Extracellular CMV05_02890 PF17862 AAA+ lid domain CMV05_02890 PF00004 ATPase family associated with various cellular activities (AAA) CMV05_02895 PF00809 Pterin binding enzyme CMV05_02900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CMV05_02900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMV05_02900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CMV05_02900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CMV05_02905 PF03840 Preprotein translocase SecG subunit CMV05_02920 PF17384 RimP C-terminal SH3 domain CMV05_02920 PF02576 RimP N-terminal domain CMV05_02925 PF13184 NusA-like KH domain CMV05_02925 PF00575 S1 RNA binding domain CMV05_02925 PF08529 NusA N-terminal domain CMV05_02930 PF08364 Bacterial translation initiation factor IF-2 associated region CMV05_02930 PF04760 Translation initiation factor IF-2, N-terminal region CMV05_02930 PF00009 Elongation factor Tu GTP binding domain CMV05_02930 PF11987 Translation-initiation factor 2 CMV05_02935 PF02033 Ribosome-binding factor A CMV05_02940 PF01509 TruB family pseudouridylate synthase (N terminal domain) CMV05_02940 PF16198 tRNA pseudouridylate synthase B C-terminal domain CMV05_02940 PF09157 Pseudouridine synthase II TruB, C-terminal CMV05_02945 PF00312 Ribosomal protein S15 CMV05_02950 PF00575 S1 RNA binding domain CMV05_02950 PF03725 3' exoribonuclease family, domain 2 CMV05_02950 PF01138 3' exoribonuclease family, domain 1 CMV05_02950 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CMV05_02950 PF00013 KH domain CMV05_02955 PF07719 Tetratricopeptide repeat CMV05_02955 PF13181 Tetratricopeptide repeat CMV05_02960 PF01047 MarR family CMV05_02980 PF03707 Bacterial signalling protein N terminal repeat CMV05_02980 PF00563 EAL domain CMV05_02980 PF00990 Diguanylate cyclase, GGDEF domain CMV05_02990 PF13508 Acetyltransferase (GNAT) domain CMV05_03000 PF00583 Acetyltransferase (GNAT) family CMV05_03010 PF03144 Elongation factor Tu domain 2 CMV05_03010 PF00009 Elongation factor Tu GTP binding domain CMV05_03010 PF16658 Class II release factor RF3, C-terminal domain CMV05_03040 PF13438 Domain of unknown function (DUF4113) CMV05_03040 PF11799 impB/mucB/samB family C-terminal domain CMV05_03040 PF00817 impB/mucB/samB family CMV05_03055 PF13657 HipA N-terminal domain CMV05_03055 PF07804 HipA-like C-terminal domain CMV05_03105 PF00817 impB/mucB/samB family CMV05_03105 PF11799 impB/mucB/samB family C-terminal domain CMV05_03105 PF13438 Domain of unknown function (DUF4113) CMV05_03110 PF00717 Peptidase S24-like CMV05_03120 PF07733 Bacterial DNA polymerase III alpha NTPase domain CMV05_03120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CMV05_03120 PF14579 Helix-hairpin-helix motif CMV05_03120 PF02811 PHP domain CMV05_03120 PF00929 Exonuclease CMV05_03120 PF11490 DNA polymerase III polC-type N-terminus II CMV05_03140 PF12161 HsdM N-terminal domain CMV05_03140 PF02384 N-6 DNA Methylase CMV05_03160 PF00069 Protein kinase domain CMV05_03160 PF03793 PASTA domain CMV05_03200 PF01381 Helix-turn-helix CMV05_03245 PF10411 Disulfide bond isomerase protein N-terminus CMV05_03245 PF13098 Thioredoxin-like domain CMV05_03260 PF10502 Signal peptidase, peptidase S26 CMV05_03270 PF06834 TraU protein CMV05_03275 PF06986 Type-1V conjugative transfer system mating pair stabilisation CMV05_03280 PF01610 Transposase CMV05_03280 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_03280 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_03295 PF00436 Single-strand binding protein family CMV05_03310 PF07728 AAA domain (dynein-related subfamily) CMV05_03330 PF00092 von Willebrand factor type A domain CMV05_03335 PF04002 RadC-like JAB domain CMV05_03350 PF00872 Transposase, Mutator family CMV05_03380 PF06122 Conjugative relaxosome accessory transposon protein CMV05_03425 PF01381 Helix-turn-helix CMV05_03425 PF00717 Peptidase S24-like CMV05_03430 PF00009 Elongation factor Tu GTP binding domain CMV05_03430 PF03144 Elongation factor Tu domain 2 CMV05_03430 PF16658 Class II release factor RF3, C-terminal domain CMV05_03435 PF00270 DEAD/DEAH box helicase CMV05_03435 PF00271 Helicase conserved C-terminal domain CMV05_03440 PF05175 Methyltransferase small domain CMV05_03445 PF05525 Branched-chain amino acid transport protein CMV05_03455 PF00152 tRNA synthetases class II (D, K and N) CMV05_03455 PF01336 OB-fold nucleic acid binding domain CMV05_03460 PF02954 Bacterial regulatory protein, Fis family CMV05_03460 PF00072 Response regulator receiver domain CMV05_03460 PF00158 Sigma-54 interaction domain CMV05_03470 PF00248 Aldo/keto reductase family CMV05_03475 PF02976 DNA mismatch repair enzyme MutH CMV05_03480 PF00293 NUDIX domain CMV05_03485 PF02896 PEP-utilising enzyme, TIM barrel domain CMV05_03485 PF00391 PEP-utilising enzyme, mobile domain CMV05_03485 PF05524 PEP-utilising enzyme, N-terminal CMV05_03485 PF01590 GAF domain CMV05_03490 PF01925 Sulfite exporter TauE/SafE CMV05_03495 PF01790 Prolipoprotein diacylglyceryl transferase CMV05_03510 PF13808 DDE_Tnp_1-associated CMV05_03510 PF01609 Transposase DDE domain CMV05_03520 PF13358 DDE superfamily endonuclease CMV05_03560 PF00303 Thymidylate synthase CMV05_03580 PF13006 Insertion element 4 transposase N-terminal CMV05_03580 PF01609 Transposase DDE domain CMV05_03600 PF01610 Transposase CMV05_03600 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_03600 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_03615 PF00005 ABC transporter CMV05_03615 PF00664 ABC transporter transmembrane region CMV05_03620 PF00529 HlyD membrane-fusion protein of T1SS CMV05_03625 PF13358 DDE superfamily endonuclease CMV05_03675 PF02690 Na+/Pi-cotransporter CMV05_03680 PF03466 LysR substrate binding domain CMV05_03680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_03685 PF01022 Bacterial regulatory protein, arsR family CMV05_03690 PF01649 Ribosomal protein S20 CMV05_03695 PF03023 Lipid II flippase MurJ CMV05_03700 PF06574 FAD synthetase CMV05_03700 PF01687 Riboflavin kinase CMV05_03705 PF06827 Zinc finger found in FPG and IleRS CMV05_03705 PF08264 Anticodon-binding domain of tRNA CMV05_03705 PF00133 tRNA synthetases class I (I, L, M and V) CMV05_03710 PF01252 Signal peptidase (SPase) II CMV05_03715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CMV05_03720 PF02401 LytB protein CMV05_03725 PF02554 Carbon starvation protein CstA CMV05_03735 PF13580 SIS domain CMV05_03740 PF03702 Anhydro-N-acetylmuramic acid kinase CMV05_03745 PF00933 Glycosyl hydrolase family 3 N terminal domain CMV05_03750 PF04397 LytTr DNA-binding domain CMV05_03750 PF00072 Response regulator receiver domain CMV05_03755 PF06580 Histidine kinase CMV05_03755 PF07694 5TMR of 5TMR-LYT CMV05_03760 PF00793 DAHP synthetase I family CMV05_03765 PF01817 Chorismate mutase type II CMV05_03765 PF02153 Prephenate dehydrogenase CMV05_03770 PF07238 PilZ domain CMV05_03775 PF00005 ABC transporter CMV05_03775 PF12848 ABC transporter CMV05_03780 PF14718 Soluble lytic murein transglycosylase L domain CMV05_03780 PF01464 Transglycosylase SLT domain CMV05_03790 PF01931 Protein of unknown function DUF84 CMV05_03795 PF00990 Diguanylate cyclase, GGDEF domain CMV05_03795 PF00563 EAL domain CMV05_03800 PF13416 Bacterial extracellular solute-binding protein CMV05_03805 PF01817 Chorismate mutase type II CMV05_03805 PF00800 Prephenate dehydratase CMV05_03810 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CMV05_03815 PF13525 Outer membrane lipoprotein CMV05_03820 PF00849 RNA pseudouridylate synthase CMV05_03820 PF01479 S4 domain CMV05_03830 PF10431 C-terminal, D2-small domain, of ClpB protein CMV05_03830 PF02861 Clp amino terminal domain, pathogenicity island component CMV05_03830 PF17871 AAA lid domain CMV05_03830 PF07724 AAA domain (Cdc48 subfamily) CMV05_03830 PF00004 ATPase family associated with various cellular activities (AAA) CMV05_03900 PF00881 Nitroreductase family CMV05_03905 PF00037 4Fe-4S binding domain CMV05_03915 PF04381 Putative exonuclease, RdgC CMV05_03920 PF00486 Transcriptional regulatory protein, C terminal CMV05_03920 PF00072 Response regulator receiver domain CMV05_03925 PF11808 Phosphate regulon sensor protein PhoR CMV05_03925 PF00989 PAS fold CMV05_03925 PF00512 His Kinase A (phospho-acceptor) domain CMV05_03925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_03930 PF12849 PBP superfamily domain CMV05_03935 PF02541 Ppx/GppA phosphatase family CMV05_03940 PF13089 Polyphosphate kinase N-terminal domain CMV05_03940 PF17941 Polyphosphate kinase C-terminal domain 1 CMV05_03940 PF13090 Polyphosphate kinase C-terminal domain 2 CMV05_03940 PF02503 Polyphosphate kinase middle domain CMV05_03945 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_03950 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_03955 PF00005 ABC transporter CMV05_03960 PF01895 PhoU domain CMV05_03965 PF03932 CutC family CMV05_03970 PF00578 AhpC/TSA family CMV05_03970 PF10417 C-terminal domain of 1-Cys peroxiredoxin CMV05_03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_03975 PF03466 LysR substrate binding domain CMV05_03980 PF01274 Malate synthase CMV05_03985 PF00463 Isocitrate lyase family CMV05_03990 PF00571 CBS domain CMV05_03995 PF02547 Queuosine biosynthesis protein CMV05_04000 PF01702 Queuine tRNA-ribosyltransferase CMV05_04005 PF02699 Preprotein translocase subunit CMV05_04010 PF02355 Protein export membrane protein CMV05_04010 PF13721 SecD export protein N-terminal TM region CMV05_04010 PF07549 SecD/SecF GG Motif CMV05_04015 PF07549 SecD/SecF GG Motif CMV05_04015 PF02355 Protein export membrane protein CMV05_04020 PF00459 Inositol monophosphatase family CMV05_04025 PF00588 SpoU rRNA Methylase family CMV05_04030 PF02082 Transcriptional regulator CMV05_04035 PF00266 Aminotransferase class-V CMV05_04040 PF01592 NifU-like N terminal domain CMV05_04045 PF01521 Iron-sulphur cluster biosynthesis CMV05_04050 PF00226 DnaJ domain CMV05_04050 PF07743 HSCB C-terminal oligomerisation domain CMV05_04055 PF00012 Hsp70 protein CMV05_04060 PF00111 2Fe-2S iron-sulfur cluster binding domain CMV05_04065 PF04384 Iron-sulphur cluster assembly CMV05_04070 PF00883 Cytosol aminopeptidase family, catalytic domain CMV05_04070 PF12404 Peptidase CMV05_04075 PF00334 Nucleoside diphosphate kinase CMV05_04080 PF04055 Radical SAM superfamily CMV05_04085 PF13464 Domain of unknown function (DUF4115) CMV05_04090 PF04551 GcpE protein CMV05_04095 PF03129 Anticodon binding domain CMV05_04095 PF13393 Histidyl-tRNA synthetase CMV05_04100 PF09976 Tetratricopeptide repeat-like domain CMV05_04105 PF13360 PQQ-like domain CMV05_04110 PF01926 50S ribosome-binding GTPase CMV05_04110 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CMV05_04125 PF02601 Exonuclease VII, large subunit CMV05_04125 PF13742 OB-fold nucleic acid binding domain CMV05_04130 PF00571 CBS domain CMV05_04130 PF00478 IMP dehydrogenase / GMP reductase domain CMV05_04135 PF02540 NAD synthase CMV05_04135 PF00117 Glutamine amidotransferase class-I CMV05_04135 PF00958 GMP synthase C terminal domain CMV05_04140 PF08543 Phosphomethylpyrimidine kinase CMV05_04155 PF13005 zinc-finger binding domain of transposase IS66 CMV05_04155 PF13007 Transposase C of IS166 homeodomain CMV05_04155 PF13817 IS66 C-terminal element CMV05_04155 PF03050 Transposase IS66 family CMV05_04165 PF01184 GPR1/FUN34/yaaH family CMV05_04170 PF01235 Sodium:alanine symporter family CMV05_04175 PF01266 FAD dependent oxidoreductase CMV05_04190 PF00141 Peroxidase CMV05_04200 PF13610 DDE domain CMV05_04215 PF09264 Vibrio cholerae sialidase, lectin insertion CMV05_04215 PF13088 BNR repeat-like domain CMV05_04220 PF01979 Amidohydrolase family CMV05_04225 PF00480 ROK family CMV05_04230 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CMV05_04240 PF03480 Bacterial extracellular solute-binding protein, family 7 CMV05_04245 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CMV05_04250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CMV05_04255 PF00701 Dihydrodipicolinate synthetase family CMV05_04260 PF01380 SIS domain CMV05_04260 PF01418 Helix-turn-helix domain, rpiR family CMV05_04265 PF01344 Kelch motif CMV05_04270 PF07646 Kelch motif CMV05_04285 PF00872 Transposase, Mutator family CMV05_04310 PF01979 Amidohydrolase family CMV05_04315 PF03610 PTS system fructose IIA component CMV05_04320 PF03613 PTS system mannose/fructose/sorbose family IID component CMV05_04325 PF03609 PTS system sorbose-specific iic component CMV05_04335 PF01380 SIS domain CMV05_04345 PF02281 Transposase Tn5 dimerisation domain CMV05_04345 PF14706 Transposase DNA-binding CMV05_04345 PF01609 Transposase DDE domain CMV05_04355 PF00455 DeoR C terminal sensor domain CMV05_04355 PF08220 DeoR-like helix-turn-helix domain CMV05_04360 PF08220 DeoR-like helix-turn-helix domain CMV05_04360 PF00455 DeoR C terminal sensor domain CMV05_04365 PF00872 Transposase, Mutator family CMV05_04385 PF04002 RadC-like JAB domain CMV05_04405 PF13358 DDE superfamily endonuclease CMV05_04430 PF13005 zinc-finger binding domain of transposase IS66 CMV05_04430 PF03050 Transposase IS66 family CMV05_04430 PF13817 IS66 C-terminal element CMV05_04430 PF13007 Transposase C of IS166 homeodomain CMV05_04445 PF01668 SmpB protein CMV05_04450 PF03364 Polyketide cyclase / dehydrase and lipid transport CMV05_04455 PF03658 RnfH family Ubiquitin CMV05_04460 PF04355 SmpA / OmlA family CMV05_04465 PF02463 RecF/RecN/SMC N terminal domain CMV05_04475 PF03222 Tryptophan/tyrosine permease family CMV05_04480 PF01212 Beta-eliminating lyase CMV05_04485 PF01513 ATP-NAD kinase CMV05_04490 PF01025 GrpE CMV05_04495 PF00012 Hsp70 protein CMV05_04500 PF01556 DnaJ C terminal domain CMV05_04500 PF00226 DnaJ domain CMV05_04500 PF00684 DnaJ central domain CMV05_04505 PF00114 Pilin (bacterial filament) CMV05_04505 PF07963 Prokaryotic N-terminal methylation motif CMV05_04530 PF03806 AbgT putative transporter family CMV05_04535 PF00756 Putative esterase CMV05_04540 PF00107 Zinc-binding dehydrogenase CMV05_04540 PF08240 Alcohol dehydrogenase GroES-like domain CMV05_04545 PF03466 LysR substrate binding domain CMV05_04545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_04550 PF14437 MafB19-like deaminase CMV05_04565 PF02769 AIR synthase related protein, C-terminal domain CMV05_04565 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CMV05_04565 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CMV05_04580 PF06786 Uncharacterised protein family (UPF0253) CMV05_04585 PF04391 Protein of unknown function (DUF533) CMV05_04590 PF03129 Anticodon binding domain CMV05_04590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CMV05_04590 PF04073 Aminoacyl-tRNA editing domain CMV05_04595 PF18389 TrmO C-terminal domain CMV05_04595 PF01980 tRNA-methyltransferase O CMV05_04600 PF01197 Ribosomal protein L31 CMV05_04605 PF00444 Ribosomal protein L36 CMV05_04610 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CMV05_04635 PF04287 tRNA pseudouridine synthase C CMV05_04640 PF00849 RNA pseudouridylate synthase CMV05_04645 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CMV05_04645 PF02780 Transketolase, C-terminal domain CMV05_04645 PF02779 Transketolase, pyrimidine binding domain CMV05_04650 PF00348 Polyprenyl synthetase CMV05_04655 PF02609 Exonuclease VII small subunit CMV05_04660 PF01618 MotA/TolQ/ExbB proton channel family CMV05_04665 PF13677 Membrane MotB of proton-channel complex MotA/MotB CMV05_04665 PF00691 OmpA family CMV05_04670 PF02926 THUMP domain CMV05_04670 PF02568 Thiamine biosynthesis protein (ThiI) CMV05_04675 PF03466 LysR substrate binding domain CMV05_04675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_04680 PF04241 Protein of unknown function (DUF423) CMV05_04690 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CMV05_04690 PF01367 5'-3' exonuclease, C-terminal SAM fold CMV05_04695 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CMV05_04695 PF11892 Domain of unknown function (DUF3412) CMV05_04695 PF03641 Possible lysine decarboxylase CMV05_04700 PF00990 Diguanylate cyclase, GGDEF domain CMV05_04710 PF14489 QueF-like protein CMV05_04710 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CMV05_04715 PF07348 Syd protein (SUKH-2) CMV05_04720 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) CMV05_04725 PF03180 NLPA lipoprotein CMV05_04730 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_04735 PF09383 NIL domain CMV05_04735 PF00005 ABC transporter CMV05_04750 PF00356 Bacterial regulatory proteins, lacI family CMV05_04755 PF02378 Phosphotransferase system, EIIC CMV05_04755 PF00367 phosphotransferase system, EIIB CMV05_04760 PF16657 Maltogenic Amylase, C-terminal domain CMV05_04760 PF00128 Alpha amylase, catalytic domain CMV05_04765 PF00072 Response regulator receiver domain CMV05_04765 PF00486 Transcriptional regulatory protein, C terminal CMV05_04770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_04770 PF00672 HAMP domain CMV05_04770 PF00512 His Kinase A (phospho-acceptor) domain CMV05_04800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CMV05_04805 PF00873 AcrB/AcrD/AcrF family CMV05_04810 PF01451 Low molecular weight phosphotyrosine protein phosphatase CMV05_04815 PF02350 UDP-N-acetylglucosamine 2-epimerase CMV05_04820 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CMV05_04820 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CMV05_04820 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CMV05_04825 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CMV05_04825 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CMV05_04825 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CMV05_04860 PF06426 Serine acetyltransferase, N-terminal CMV05_04860 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_04870 PF03808 Glycosyl transferase WecB/TagA/CpsF family CMV05_04875 PF12561 ToxR activated gene A lipoprotein domain CMV05_04875 PF17945 Beta/Gamma crystallin CMV05_04890 PF13358 DDE superfamily endonuclease CMV05_04920 PF13614 AAA domain CMV05_04925 PF02563 Polysaccharide biosynthesis/export protein CMV05_04925 PF10531 SLBB domain CMV05_04925 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CMV05_04935 PF02397 Bacterial sugar transferase CMV05_04945 PF00464 Serine hydroxymethyltransferase CMV05_04950 PF01609 Transposase DDE domain CMV05_04965 PF03099 Biotin/lipoate A/B protein ligase family CMV05_04970 PF04359 Protein of unknown function (DUF493) CMV05_04975 PF07943 Penicillin-binding protein 5, C-terminal domain CMV05_04975 PF00768 D-alanyl-D-alanine carboxypeptidase CMV05_04980 PF05036 Sporulation related domain CMV05_04980 PF03330 Lytic transglycolase CMV05_04985 PF01098 Cell cycle protein CMV05_04990 PF03717 Penicillin-binding Protein dimerisation domain CMV05_04990 PF00905 Penicillin binding protein transpeptidase domain CMV05_04995 PF02590 Predicted SPOUT methyltransferase CMV05_05005 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CMV05_05005 PF06144 DNA polymerase III, delta subunit CMV05_05010 PF04390 Lipopolysaccharide-assembly CMV05_05015 PF13603 Leucyl-tRNA synthetase, Domain 2 CMV05_05015 PF08264 Anticodon-binding domain of tRNA CMV05_05015 PF00133 tRNA synthetases class I (I, L, M and V) CMV05_05020 PF07295 Zinc-ribbon containing domain CMV05_05025 PF00795 Carbon-nitrogen hydrolase CMV05_05030 PF00571 CBS domain CMV05_05030 PF03471 Transporter associated domain CMV05_05040 PF02562 PhoH-like protein CMV05_05045 PF01938 TRAM domain CMV05_05045 PF04055 Radical SAM superfamily CMV05_05045 PF00919 Uncharacterized protein family UPF0004 CMV05_05050 PF01494 FAD binding domain CMV05_05055 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CMV05_05060 PF02896 PEP-utilising enzyme, TIM barrel domain CMV05_05060 PF00391 PEP-utilising enzyme, mobile domain CMV05_05060 PF05524 PEP-utilising enzyme, N-terminal CMV05_05065 PF00381 PTS HPr component phosphorylation site CMV05_05070 PF00291 Pyridoxal-phosphate dependent enzyme CMV05_05080 PF04354 ZipA, C-terminal FtsZ-binding domain CMV05_05090 PF13609 Gram-negative porin CMV05_05095 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CMV05_05100 PF13411 MerR HTH family regulatory protein CMV05_05110 PF01145 SPFH domain / Band 7 family CMV05_05110 PF16200 C-terminal region of band_7 CMV05_05120 PF00085 Thioredoxin CMV05_05125 PF08338 Domain of unknown function (DUF1731) CMV05_05125 PF01370 NAD dependent epimerase/dehydratase family CMV05_05130 PF12850 Calcineurin-like phosphoesterase superfamily domain CMV05_05140 PF17323 Trans-membrane regulatory protein ToxS CMV05_05145 PF00486 Transcriptional regulatory protein, C terminal CMV05_05150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_05150 PF00183 Hsp90 protein CMV05_05160 PF05191 Adenylate kinase, active site lid CMV05_05165 PF00762 Ferrochelatase CMV05_05170 PF00854 POT family CMV05_05175 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_05175 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_05175 PF01610 Transposase CMV05_05180 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_05180 PF01610 Transposase CMV05_05180 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_05185 PF02357 Transcription termination factor nusG CMV05_05190 PF13537 Glutamine amidotransferase domain CMV05_05190 PF00733 Asparagine synthase CMV05_05195 PF00999 Sodium/hydrogen exchanger family CMV05_05195 PF02254 TrkA-N domain CMV05_05200 PF00480 ROK family CMV05_05200 PF01047 MarR family CMV05_05205 PF01979 Amidohydrolase family CMV05_05210 PF00367 phosphotransferase system, EIIB CMV05_05210 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CMV05_05210 PF02378 Phosphotransferase system, EIIC CMV05_05215 PF00749 tRNA synthetases class I (E and Q), catalytic domain CMV05_05215 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CMV05_05230 PF17848 Acetyl-coA carboxylase zinc finger domain CMV05_05230 PF01039 Carboxyl transferase domain CMV05_05235 PF02875 Mur ligase family, glutamate ligase domain CMV05_05235 PF08245 Mur ligase middle domain CMV05_05240 PF05036 Sporulation related domain CMV05_05245 PF02674 Colicin V production protein CMV05_05250 PF00156 Phosphoribosyl transferase domain CMV05_05255 PF03553 Na+/H+ antiporter family CMV05_05255 PF13726 Na+-H+ antiporter family CMV05_05260 PF00929 Exonuclease CMV05_05265 PF18393 MotY N-terminal domain CMV05_05265 PF00691 OmpA family CMV05_05270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CMV05_05275 PF00633 Helix-hairpin-helix motif CMV05_05275 PF10576 Iron-sulfur binding domain of endonuclease III CMV05_05275 PF00730 HhH-GPD superfamily base excision DNA repair protein CMV05_05290 PF03116 NQR2, RnfD, RnfE family CMV05_05295 PF10531 SLBB domain CMV05_05295 PF13375 RnfC Barrel sandwich hybrid domain CMV05_05295 PF12838 4Fe-4S dicluster domain CMV05_05295 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CMV05_05300 PF04060 Putative Fe-S cluster CMV05_05305 PF02508 Rnf-Nqr subunit, membrane protein CMV05_05310 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CMV05_05310 PF01648 4'-phosphopantetheinyl transferase superfamily CMV05_05315 PF07715 TonB-dependent Receptor Plug Domain CMV05_05320 PF11806 Domain of unknown function (DUF3327) CMV05_05320 PF00756 Putative esterase CMV05_05330 PF00501 AMP-binding enzyme CMV05_05330 PF13193 AMP-binding enzyme C-terminal domain CMV05_05330 PF00668 Condensation domain CMV05_05330 PF00550 Phosphopantetheine attachment site CMV05_05335 PF05977 Transmembrane secretion effector CMV05_05340 PF00857 Isochorismatase family CMV05_05340 PF00550 Phosphopantetheine attachment site CMV05_05345 PF00501 AMP-binding enzyme CMV05_05345 PF13193 AMP-binding enzyme C-terminal domain CMV05_05350 PF00425 chorismate binding enzyme CMV05_05360 PF00793 DAHP synthetase I family CMV05_05375 PF13005 zinc-finger binding domain of transposase IS66 CMV05_05375 PF13007 Transposase C of IS166 homeodomain CMV05_05375 PF13817 IS66 C-terminal element CMV05_05375 PF03050 Transposase IS66 family CMV05_05405 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_05445 PF04002 RadC-like JAB domain CMV05_05450 PF13358 DDE superfamily endonuclease CMV05_05465 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CMV05_05465 PF13036 Peptidoglycan-synthase activator LpoB CMV05_05480 PF01230 HIT domain CMV05_05495 PF13358 DDE superfamily endonuclease CMV05_05500 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_05505 PF12563 Hemolytic toxin N terminal CMV05_05505 PF16458 Beta-prism lectin CMV05_05505 PF07968 Leukocidin/Hemolysin toxin family CMV05_05515 PF03461 TRCF domain CMV05_05515 PF17757 UvrB interaction domain CMV05_05515 PF00270 DEAD/DEAH box helicase CMV05_05515 PF00271 Helicase conserved C-terminal domain CMV05_05515 PF02559 CarD-like/TRCF domain CMV05_05525 PF02687 FtsX-like permease family CMV05_05525 PF12704 MacB-like periplasmic core domain CMV05_05530 PF00005 ABC transporter CMV05_05535 PF02687 FtsX-like permease family CMV05_05535 PF12704 MacB-like periplasmic core domain CMV05_05545 PF00753 Metallo-beta-lactamase superfamily CMV05_05545 PF13567 Domain of unknown function (DUF4131) CMV05_05545 PF03772 Competence protein CMV05_05550 PF00005 ABC transporter CMV05_05550 PF00664 ABC transporter transmembrane region CMV05_05555 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CMV05_05560 PF03966 Trm112p-like protein CMV05_05565 PF02348 Cytidylyltransferase CMV05_05570 PF04293 SpoVR like protein CMV05_05575 PF04285 Protein of unknown function (DUF444) CMV05_05580 PF06798 PrkA serine protein kinase C-terminal domain CMV05_05580 PF08298 PrkA AAA domain CMV05_05595 PF04055 Radical SAM superfamily CMV05_05620 PF01228 Glycine radical CMV05_05620 PF02901 Pyruvate formate lyase-like CMV05_05640 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMV05_05645 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_05650 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_05655 PF03372 Endonuclease/Exonuclease/phosphatase family CMV05_05660 PF00672 HAMP domain CMV05_05660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_05665 PF10689 Protein of unknown function (DUF2496) CMV05_05670 PF07445 Primosomal replication protein priC CMV05_05675 PF01925 Sulfite exporter TauE/SafE CMV05_05680 PF13307 Helicase C-terminal domain CMV05_05680 PF06733 DEAD_2 CMV05_05695 PF02810 SEC-C motif CMV05_05700 PF00563 EAL domain CMV05_05700 PF08668 HDOD domain CMV05_05705 PF00149 Calcineurin-like phosphoesterase CMV05_05710 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CMV05_05715 PF09190 DALR domain CMV05_05715 PF01406 tRNA synthetases class I (C) catalytic domain CMV05_05720 PF02075 Crossover junction endodeoxyribonuclease RuvC CMV05_05725 PF07499 RuvA, C-terminal domain CMV05_05725 PF01330 RuvA N terminal domain CMV05_05730 PF17864 RuvB AAA lid domain CMV05_05730 PF05491 RuvB C-terminal winged helix domain CMV05_05730 PF05496 Holliday junction DNA helicase RuvB P-loop domain CMV05_05735 PF01654 Cytochrome bd terminal oxidase subunit I CMV05_05740 PF02322 Cytochrome bd terminal oxidase subunit II CMV05_05745 PF08173 Membrane bound YbgT-like protein CMV05_05750 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CMV05_05755 PF03061 Thioesterase superfamily CMV05_05760 PF01618 MotA/TolQ/ExbB proton channel family CMV05_05765 PF02472 Biopolymer transport protein ExbD/TolR CMV05_05780 PF00691 OmpA family CMV05_05785 PF13525 Outer membrane lipoprotein CMV05_05785 PF16331 TolA binding protein trimerisation CMV05_05790 PF02445 Quinolinate synthetase A protein CMV05_05800 PF00072 Response regulator receiver domain CMV05_05800 PF09308 LuxQ, periplasmic CMV05_05800 PF00512 His Kinase A (phospho-acceptor) domain CMV05_05800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_05805 PF06610 L-alanine exporter CMV05_05820 PF04002 RadC-like JAB domain CMV05_05835 PF13358 DDE superfamily endonuclease CMV05_05845 PF00563 EAL domain CMV05_05845 PF00990 Diguanylate cyclase, GGDEF domain CMV05_05845 PF03707 Bacterial signalling protein N terminal repeat CMV05_05845 PF13188 PAS domain CMV05_05850 PF00171 Aldehyde dehydrogenase family CMV05_05865 PF00440 Bacterial regulatory proteins, tetR family CMV05_05865 PF16295 Tetracyclin repressor-like, C-terminal domain CMV05_05870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CMV05_05870 PF09317 Domain of unknown function (DUF1974) CMV05_05870 PF02770 Acyl-CoA dehydrogenase, middle domain CMV05_05870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CMV05_05875 PF12241 Trans-2-enoyl-CoA reductase catalytic region CMV05_05875 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CMV05_05875 PF07055 Enoyl reductase FAD binding domain CMV05_05905 PF13183 4Fe-4S dicluster domain CMV05_05905 PF01565 FAD binding domain CMV05_05905 PF02913 FAD linked oxidases, C-terminal domain CMV05_05910 PF04191 Phospholipid methyltransferase CMV05_05920 PF00221 Aromatic amino acid lyase CMV05_05925 PF17391 Urocanase N-terminal domain CMV05_05925 PF17392 Urocanase C-terminal domain CMV05_05925 PF01175 Urocanase Rossmann-like domain CMV05_05930 PF00491 Arginase family CMV05_05935 PF01979 Amidohydrolase family CMV05_05940 PF07702 UTRA domain CMV05_05940 PF00392 Bacterial regulatory proteins, gntR family CMV05_05950 PF04269 Protein of unknown function, DUF440 CMV05_05955 PF01132 Elongation factor P (EF-P) OB domain CMV05_05955 PF08207 Elongation factor P (EF-P) KOW-like domain CMV05_05955 PF09285 Elongation factor P, C-terminal CMV05_05965 PF03104 DNA polymerase family B, exonuclease domain CMV05_05965 PF00136 DNA polymerase family B CMV05_05970 PF00196 Bacterial regulatory proteins, luxR family CMV05_05970 PF00072 Response regulator receiver domain CMV05_05975 PF01541 GIY-YIG catalytic domain CMV05_05975 PF08459 UvrC Helix-hairpin-helix N-terminal CMV05_05975 PF02151 UvrB/uvrC motif CMV05_05980 PF01066 CDP-alcohol phosphatidyltransferase CMV05_06025 PF01409 tRNA synthetases class II core domain (F) CMV05_06025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CMV05_06030 PF03484 tRNA synthetase B5 domain CMV05_06030 PF03147 Ferredoxin-fold anticodon binding domain CMV05_06030 PF01588 Putative tRNA binding domain CMV05_06030 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CMV05_06030 PF03483 B3/4 domain CMV05_06045 PF05724 Thiopurine S-methyltransferase (TPMT) CMV05_06050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_06050 PF13426 PAS domain CMV05_06050 PF08447 PAS fold CMV05_06055 PF02222 ATP-grasp domain CMV05_06065 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CMV05_06065 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CMV05_06070 PF04172 LrgB-like family CMV05_06075 PF03788 LrgA family CMV05_06080 PF08411 Exonuclease C-terminal CMV05_06080 PF00929 Exonuclease CMV05_06090 PF03412 Peptidase C39 family CMV05_06090 PF00664 ABC transporter transmembrane region CMV05_06090 PF00005 ABC transporter CMV05_06110 PF13358 DDE superfamily endonuclease CMV05_06115 PF02794 RTX toxin acyltransferase family CMV05_06120 PF12146 Serine aminopeptidase, S33 CMV05_06120 PF16671 Actin cross-linking domain CMV05_06120 PF11647 Membrane Localization Domain CMV05_06120 PF11713 Peptidase C80 family CMV05_06120 PF07634 RtxA repeat CMV05_06125 PF13358 DDE superfamily endonuclease CMV05_06140 PF02654 Cobalamin-5-phosphate synthase CMV05_06145 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CMV05_06155 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CMV05_06160 PF01032 FecCD transport family CMV05_06185 PF03466 LysR substrate binding domain CMV05_06185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_06195 PF01863 Protein of unknown function DUF45 CMV05_06200 PF05971 RNA methyltransferase CMV05_06215 PF04204 Homoserine O-succinyltransferase CMV05_06235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CMV05_06250 PF17203 Single cache domain 3 CMV05_06250 PF00989 PAS fold CMV05_06250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_06250 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CMV05_06255 PF12431 Transcriptional regulator CMV05_06255 PF00072 Response regulator receiver domain CMV05_06270 PF00872 Transposase, Mutator family CMV05_06285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CMV05_06285 PF11852 Domain of unknown function (DUF3372) CMV05_06285 PF03714 Bacterial pullanase-associated domain CMV05_06285 PF18494 Pullulanase Ins domain CMV05_06285 PF17967 Pullulanase N2 domain CMV05_06295 PF00990 Diguanylate cyclase, GGDEF domain CMV05_06295 PF00072 Response regulator receiver domain CMV05_06320 PF00589 Phage integrase family CMV05_06320 PF02899 Phage integrase, N-terminal SAM-like domain CMV05_06345 PF16671 Actin cross-linking domain CMV05_06345 PF04717 Type VI secretion system, phage-baseplate injector CMV05_06395 PF07724 AAA domain (Cdc48 subfamily) CMV05_06395 PF17871 AAA lid domain CMV05_06395 PF10431 C-terminal, D2-small domain, of ClpB protein CMV05_06395 PF00004 ATPase family associated with various cellular activities (AAA) CMV05_06400 PF07478 D-ala D-ala ligase C-terminus CMV05_06420 PF16697 Inner membrane component of T3SS, cytoplasmic domain CMV05_06445 PF00069 Protein kinase domain CMV05_06445 PF08239 Bacterial SH3 domain CMV05_06475 PF00486 Transcriptional regulatory protein, C terminal CMV05_06500 PF08029 HisG, C-terminal domain CMV05_06500 PF01634 ATP phosphoribosyltransferase CMV05_06505 PF00815 Histidinol dehydrogenase CMV05_06510 PF00155 Aminotransferase class I and II CMV05_06515 PF00475 Imidazoleglycerol-phosphate dehydratase CMV05_06515 PF08645 Polynucleotide kinase 3 phosphatase CMV05_06520 PF00117 Glutamine amidotransferase class-I CMV05_06530 PF00977 Histidine biosynthesis protein CMV05_06535 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CMV05_06535 PF01502 Phosphoribosyl-AMP cyclohydrolase CMV05_06540 PF00849 RNA pseudouridylate synthase CMV05_06545 PF03971 Monomeric isocitrate dehydrogenase CMV05_06550 PF00313 'Cold-shock' DNA-binding domain CMV05_06555 PF02617 ATP-dependent Clp protease adaptor protein ClpS CMV05_06560 PF02861 Clp amino terminal domain, pathogenicity island component CMV05_06560 PF00004 ATPase family associated with various cellular activities (AAA) CMV05_06560 PF10431 C-terminal, D2-small domain, of ClpB protein CMV05_06560 PF07724 AAA domain (Cdc48 subfamily) CMV05_06560 PF17871 AAA lid domain CMV05_06565 PF01176 Translation initiation factor 1A / IF-1 CMV05_06570 PF04377 Arginine-tRNA-protein transferase, C terminus CMV05_06570 PF04376 Arginine-tRNA-protein transferase, N terminus CMV05_06575 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CMV05_06580 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CMV05_06585 PF10692 Protein of unknown function (DUF2498) CMV05_06590 PF08272 Topoisomerase I zinc-ribbon-like CMV05_06590 PF01131 DNA topoisomerase CMV05_06590 PF01751 Toprim domain CMV05_06590 PF01396 Topoisomerase DNA binding C4 zinc finger CMV05_06595 PF00483 Nucleotidyl transferase CMV05_06600 PF00534 Glycosyl transferases group 1 CMV05_06600 PF08323 Starch synthase catalytic domain CMV05_06620 PF04994 TfoX C-terminal domain CMV05_06620 PF04993 TfoX N-terminal domain CMV05_06625 PF00356 Bacterial regulatory proteins, lacI family CMV05_06630 PF02613 Nitrate reductase delta subunit CMV05_06635 PF00486 Transcriptional regulatory protein, C terminal CMV05_06635 PF00072 Response regulator receiver domain CMV05_06640 PF02698 DUF218 domain CMV05_06650 PF17192 MukF middle domain CMV05_06650 PF17193 MukF C-terminal domain CMV05_06650 PF03882 MukF winged-helix domain CMV05_06655 PF04288 MukE-like family CMV05_06660 PF04310 MukB N-terminal CMV05_06660 PF16330 MukB hinge domain CMV05_06675 PF08443 RimK-like ATP-grasp domain CMV05_06675 PF18030 RimK PreATP-grasp domain CMV05_06680 PF08003 Protein of unknown function (DUF1698) CMV05_06685 PF13649 Methyltransferase domain CMV05_06695 PF01610 Transposase CMV05_06695 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_06695 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_06705 PF02938 GAD domain CMV05_06705 PF00152 tRNA synthetases class II (D, K and N) CMV05_06705 PF01336 OB-fold nucleic acid binding domain CMV05_06710 PF00265 Thymidine kinase CMV05_06715 PF02698 DUF218 domain CMV05_06725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_06725 PF03466 LysR substrate binding domain CMV05_06740 PF01226 Formate/nitrite transporter CMV05_06745 PF06796 Periplasmic nitrate reductase protein NapE CMV05_06750 PF03264 NapC/NirT cytochrome c family, N-terminal region CMV05_06755 PF18364 Molybdopterin oxidoreductase N-terminal domain CMV05_06755 PF00384 Molybdopterin oxidoreductase CMV05_06755 PF01568 Molydopterin dinucleotide binding domain CMV05_06765 PF02833 DHHA2 domain CMV05_06765 PF01368 DHH family CMV05_06775 PF07690 Major Facilitator Superfamily CMV05_06780 PF12833 Helix-turn-helix domain CMV05_06780 PF02311 AraC-like ligand binding domain CMV05_06785 PF00005 ABC transporter CMV05_06790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMV05_06790 PF00005 ABC transporter CMV05_06795 PF12911 N-terminal TM domain of oligopeptide transport permease C CMV05_06795 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_06800 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_06805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMV05_06810 PF02954 Bacterial regulatory protein, Fis family CMV05_06810 PF00158 Sigma-54 interaction domain CMV05_06815 PF04012 PspA/IM30 family CMV05_06820 PF06667 Phage shock protein B CMV05_06830 PF03352 Methyladenine glycosylase CMV05_06830 PF13302 Acetyltransferase (GNAT) domain CMV05_06830 PF13673 Acetyltransferase (GNAT) domain CMV05_06830 PF00958 GMP synthase C terminal domain CMV05_06830 PF00117 Glutamine amidotransferase class-I CMV05_06835 PF01053 Cys/Met metabolism PLP-dependent enzyme CMV05_06840 PF13091 PLD-like domain CMV05_06840 PF13396 Phospholipase_D-nuclease N-terminal CMV05_06845 PF00209 Sodium:neurotransmitter symporter family CMV05_06850 PF00849 RNA pseudouridylate synthase CMV05_06865 PF13358 DDE superfamily endonuclease CMV05_06875 PF01066 CDP-alcohol phosphatidyltransferase CMV05_06880 PF00005 ABC transporter CMV05_06885 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_06890 PF13416 Bacterial extracellular solute-binding protein CMV05_06900 PF06945 Protein of unknown function (DUF1289) CMV05_06910 PF02872 5'-nucleotidase, C-terminal domain CMV05_06910 PF00149 Calcineurin-like phosphoesterase CMV05_06920 PF00271 Helicase conserved C-terminal domain CMV05_06920 PF00270 DEAD/DEAH box helicase CMV05_06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_06940 PF00672 HAMP domain CMV05_06940 PF00512 His Kinase A (phospho-acceptor) domain CMV05_06945 PF00072 Response regulator receiver domain CMV05_06945 PF00486 Transcriptional regulatory protein, C terminal CMV05_06955 PF00271 Helicase conserved C-terminal domain CMV05_06955 PF04851 Type III restriction enzyme, res subunit CMV05_06960 PF00849 RNA pseudouridylate synthase CMV05_06960 PF01479 S4 domain CMV05_06965 PF07690 Major Facilitator Superfamily CMV05_06975 PF11066 Protein of unknown function (DUF2867) CMV05_06975 PF13460 NAD(P)H-binding CMV05_06995 PF00005 ABC transporter CMV05_07010 PF06965 Na+/H+ antiporter 1 CMV05_07020 PF00202 Aminotransferase class-III CMV05_07025 PF16653 Saccharopine dehydrogenase C-terminal domain CMV05_07025 PF03435 Saccharopine dehydrogenase NADP binding domain CMV05_07035 PF00672 HAMP domain CMV05_07035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_07050 PF13005 zinc-finger binding domain of transposase IS66 CMV05_07050 PF13007 Transposase C of IS166 homeodomain CMV05_07050 PF03050 Transposase IS66 family CMV05_07050 PF13817 IS66 C-terminal element CMV05_07060 PF01610 Transposase CMV05_07060 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_07060 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_07075 PF00994 Probable molybdopterin binding domain CMV05_07085 PF00175 Oxidoreductase NAD-binding domain CMV05_07085 PF00111 2Fe-2S iron-sulfur cluster binding domain CMV05_07085 PF00970 Oxidoreductase FAD-binding domain CMV05_07090 PF00268 Ribonucleotide reductase, small chain CMV05_07095 PF03477 ATP cone domain CMV05_07095 PF00317 Ribonucleotide reductase, all-alpha domain CMV05_07095 PF02867 Ribonucleotide reductase, barrel domain CMV05_07105 PF00521 DNA gyrase/topoisomerase IV, subunit A CMV05_07105 PF03989 DNA gyrase C-terminal domain, beta-propeller CMV05_07110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_07110 PF12729 Four helix bundle sensory module for signal transduction CMV05_07110 PF00672 HAMP domain CMV05_07125 PF01970 Tripartite tricarboxylate transporter TctA family CMV05_07130 PF08218 Citrate lyase ligase C-terminal domain CMV05_07150 PF13358 DDE superfamily endonuclease CMV05_07160 PF17203 Single cache domain 3 CMV05_07160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_07165 PF12431 Transcriptional regulator CMV05_07165 PF00072 Response regulator receiver domain CMV05_07170 PF06857 Malonate decarboxylase delta subunit (MdcD) CMV05_07175 PF03328 HpcH/HpaI aldolase/citrate lyase family CMV05_07180 PF04223 Citrate lyase, alpha subunit (CitF) CMV05_07185 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CMV05_07190 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CMV05_07220 PF01238 Phosphomannose isomerase type I CMV05_07225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMV05_07225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CMV05_07225 PF02378 Phosphotransferase system, EIIC CMV05_07235 PF12833 Helix-turn-helix domain CMV05_07245 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CMV05_07255 PF02001 Protein of unknown function DUF134 CMV05_07270 PF13407 Periplasmic binding protein domain CMV05_07275 PF13358 DDE superfamily endonuclease CMV05_07285 PF01609 Transposase DDE domain CMV05_07285 PF13808 DDE_Tnp_1-associated CMV05_07300 PF02653 Branched-chain amino acid transport system / permease component CMV05_07305 PF03466 LysR substrate binding domain CMV05_07305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_07310 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CMV05_07315 PF01219 Prokaryotic diacylglycerol kinase CMV05_07320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_07320 PF00512 His Kinase A (phospho-acceptor) domain CMV05_07320 PF00672 HAMP domain CMV05_07325 PF00072 Response regulator receiver domain CMV05_07325 PF00486 Transcriptional regulatory protein, C terminal CMV05_07330 PF01970 Tripartite tricarboxylate transporter TctA family CMV05_07360 PF00285 Citrate synthase, C-terminal domain CMV05_07365 PF00330 Aconitase family (aconitate hydratase) CMV05_07365 PF00694 Aconitase C-terminal domain CMV05_07370 PF04303 PrpF protein CMV05_07375 PF16177 Acetyl-coenzyme A synthetase N-terminus CMV05_07375 PF00501 AMP-binding enzyme CMV05_07375 PF13193 AMP-binding enzyme C-terminal domain CMV05_07395 PF04055 Radical SAM superfamily CMV05_07400 PF06508 Queuosine biosynthesis protein QueC CMV05_07580 PF10672 S-adenosylmethionine-dependent methyltransferase CMV05_07580 PF17785 PUA-like domain CMV05_07600 PF00708 Acylphosphatase CMV05_07605 PF04358 DsrC like protein CMV05_07610 PF01027 Inhibitor of apoptosis-promoting Bax1 CMV05_07615 PF00005 ABC transporter CMV05_07620 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_07625 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_07630 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMV05_07635 PF14824 Sirohaem biosynthesis protein central CMV05_07635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CMV05_07635 PF10414 Sirohaem synthase dimerisation region CMV05_07645 PF13808 DDE_Tnp_1-associated CMV05_07645 PF01609 Transposase DDE domain CMV05_07655 PF13358 DDE superfamily endonuclease CMV05_07665 PF04461 Protein of unknown function (DUF520) CMV05_07670 PF00793 DAHP synthetase I family CMV05_07675 PF00391 PEP-utilising enzyme, mobile domain CMV05_07675 PF02896 PEP-utilising enzyme, TIM barrel domain CMV05_07675 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CMV05_07690 PF17783 CvfB-like winged helix domain CMV05_07690 PF13509 S1 domain CMV05_07695 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CMV05_07695 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CMV05_07695 PF01189 16S rRNA methyltransferase RsmB/F CMV05_07700 PF02470 MlaD protein CMV05_07705 PF04403 Paraquat-inducible protein A CMV05_07710 PF00005 ABC transporter CMV05_07710 PF00664 ABC transporter transmembrane region CMV05_07715 PF13185 GAF domain CMV05_07725 PF17804 Tail specific protease N-terminal domain CMV05_07725 PF11818 C-terminal domain of tail specific protease (DUF3340) CMV05_07725 PF03572 Peptidase family S41 CMV05_07725 PF00595 PDZ domain CMV05_07735 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CMV05_07735 PF01433 Peptidase family M1 domain CMV05_07735 PF11940 Domain of unknown function (DUF3458) Ig-like fold CMV05_07745 PF05088 Bacterial NAD-glutamate dehydrogenase CMV05_07750 PF01180 Dihydroorotate dehydrogenase CMV05_07760 PF07126 Cell-division protein ZapC CMV05_07765 PF01170 Putative RNA methylase family UPF0020 CMV05_07765 PF10672 S-adenosylmethionine-dependent methyltransferase CMV05_07765 PF02926 THUMP domain CMV05_07785 PF04957 Ribosome modulation factor CMV05_07790 PF07977 FabA-like domain CMV05_07795 PF05362 Lon protease (S16) C-terminal proteolytic domain CMV05_07795 PF13654 AAA domain CMV05_07800 PF06303 MatP N-terminal domain CMV05_07800 PF17414 MatP C-terminal ribbon-helix-helix domain CMV05_07825 PF00872 Transposase, Mutator family CMV05_07995 PF02631 RecX family CMV05_08005 PF02796 Helix-turn-helix domain of resolvase CMV05_08005 PF00239 Resolvase, N terminal domain CMV05_08010 PF13700 Domain of unknown function (DUF4158) CMV05_08010 PF01526 Tn3 transposase DDE domain CMV05_08020 PF03050 Transposase IS66 family CMV05_08020 PF13817 IS66 C-terminal element CMV05_08020 PF13007 Transposase C of IS166 homeodomain CMV05_08020 PF13005 zinc-finger binding domain of transposase IS66 CMV05_08070 PF03050 Transposase IS66 family CMV05_08070 PF13007 Transposase C of IS166 homeodomain CMV05_08070 PF13005 zinc-finger binding domain of transposase IS66 CMV05_08070 PF13817 IS66 C-terminal element CMV05_08090 PF13007 Transposase C of IS166 homeodomain CMV05_08090 PF03050 Transposase IS66 family CMV05_08090 PF13005 zinc-finger binding domain of transposase IS66 CMV05_08090 PF13817 IS66 C-terminal element CMV05_08105 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_08125 PF00115 Cytochrome C and Quinol oxidase polypeptide I CMV05_08140 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CMV05_08140 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CMV05_08165 PF13545 Crp-like helix-turn-helix domain CMV05_08165 PF00027 Cyclic nucleotide-binding domain CMV05_08170 PF00582 Universal stress protein family CMV05_08175 PF01171 PP-loop family CMV05_08195 PF08402 TOBE domain CMV05_08195 PF00005 ABC transporter CMV05_08200 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_08205 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_08210 PF13416 Bacterial extracellular solute-binding protein CMV05_08215 PF13416 Bacterial extracellular solute-binding protein CMV05_08220 PF02146 Sir2 family CMV05_08225 PF00909 Ammonium Transporter Family CMV05_08230 PF12848 ABC transporter CMV05_08230 PF00005 ABC transporter CMV05_08235 PF00196 Bacterial regulatory proteins, luxR family CMV05_08235 PF00072 Response regulator receiver domain CMV05_08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_08240 PF07730 Histidine kinase CMV05_08240 PF05231 MASE1 CMV05_08245 PF07690 Major Facilitator Superfamily CMV05_08255 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_08260 PF00005 ABC transporter CMV05_08260 PF08402 TOBE domain CMV05_08265 PF12804 MobA-like NTP transferase domain CMV05_08270 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CMV05_08280 PF00480 ROK family CMV05_08285 PF13358 DDE superfamily endonuclease CMV05_08300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_08300 PF00672 HAMP domain CMV05_08300 PF12729 Four helix bundle sensory module for signal transduction CMV05_08305 PF00877 NlpC/P60 family CMV05_08330 PF01554 MatE CMV05_08340 PF01609 Transposase DDE domain CMV05_08350 PF01734 Patatin-like phospholipase CMV05_08365 PF02472 Biopolymer transport protein ExbD/TolR CMV05_08370 PF01618 MotA/TolQ/ExbB proton channel family CMV05_08375 PF01618 MotA/TolQ/ExbB proton channel family CMV05_08400 PF04389 Peptidase family M28 CMV05_08400 PF04151 Bacterial pre-peptidase C-terminal domain CMV05_08405 PF02798 Glutathione S-transferase, N-terminal domain CMV05_08405 PF14497 Glutathione S-transferase, C-terminal domain CMV05_08415 PF04209 homogentisate 1,2-dioxygenase CMV05_08420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CMV05_08425 PF01546 Peptidase family M20/M25/M40 CMV05_08425 PF07687 Peptidase dimerisation domain CMV05_08440 PF01235 Sodium:alanine symporter family CMV05_08445 PF01810 LysE type translocator CMV05_08450 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CMV05_08455 PF07690 Major Facilitator Superfamily CMV05_08460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_08460 PF03466 LysR substrate binding domain CMV05_08470 PF00270 DEAD/DEAH box helicase CMV05_08470 PF11898 Domain of unknown function (DUF3418) CMV05_08470 PF04408 Helicase associated domain (HA2) CMV05_08470 PF00271 Helicase conserved C-terminal domain CMV05_08470 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CMV05_08490 PF17158 Membrane-associated sensor, integral membrane domain CMV05_08490 PF00990 Diguanylate cyclase, GGDEF domain CMV05_08500 PF00012 Hsp70 protein CMV05_08505 PF00012 Hsp70 protein CMV05_08510 PF00465 Iron-containing alcohol dehydrogenase CMV05_08535 PF00356 Bacterial regulatory proteins, lacI family CMV05_08540 PF00232 Glycosyl hydrolase family 1 CMV05_08545 PF00270 DEAD/DEAH box helicase CMV05_08545 PF00271 Helicase conserved C-terminal domain CMV05_08550 PF00384 Molybdopterin oxidoreductase CMV05_08550 PF01568 Molydopterin dinucleotide binding domain CMV05_08550 PF18364 Molybdopterin oxidoreductase N-terminal domain CMV05_08555 PF03264 NapC/NirT cytochrome c family, N-terminal region CMV05_08560 PF00313 'Cold-shock' DNA-binding domain CMV05_08570 PF00072 Response regulator receiver domain CMV05_08570 PF02954 Bacterial regulatory protein, Fis family CMV05_08570 PF00158 Sigma-54 interaction domain CMV05_08575 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMV05_08575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_08575 PF00512 His Kinase A (phospho-acceptor) domain CMV05_08580 PF00939 Sodium:sulfate symporter transmembrane region CMV05_08585 PF00672 HAMP domain CMV05_08585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_08590 PF01168 Alanine racemase, N-terminal domain CMV05_08590 PF00842 Alanine racemase, C-terminal domain CMV05_08605 PF00892 EamA-like transporter family CMV05_08610 PF05230 MASE2 domain CMV05_08610 PF00990 Diguanylate cyclase, GGDEF domain CMV05_08620 PF13302 Acetyltransferase (GNAT) domain CMV05_08625 PF00158 Sigma-54 interaction domain CMV05_08625 PF18024 Helix-turn-helix domain CMV05_08630 PF05128 Domain of unknown function (DUF697) CMV05_08635 PF04317 YcjX-like family, DUF463 CMV05_08650 PF00425 chorismate binding enzyme CMV05_08650 PF04715 Anthranilate synthase component I, N terminal region CMV05_08655 PF00293 NUDIX domain CMV05_08660 PF03222 Tryptophan/tyrosine permease family CMV05_08665 PF03313 Serine dehydratase alpha chain CMV05_08665 PF03315 Serine dehydratase beta chain CMV05_08670 PF00041 Fibronectin type III domain CMV05_08670 PF12561 ToxR activated gene A lipoprotein domain CMV05_08675 PF04231 Endonuclease I CMV05_08680 PF01242 6-pyruvoyl tetrahydropterin synthase CMV05_08685 PF17200 Single Cache domain 2 CMV05_08685 PF00672 HAMP domain CMV05_08685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_08690 PF00152 tRNA synthetases class II (D, K and N) CMV05_08690 PF01336 OB-fold nucleic acid binding domain CMV05_08700 PF00072 Response regulator receiver domain CMV05_08700 PF01339 CheB methylesterase CMV05_08705 PF03975 CheD chemotactic sensory transduction CMV05_08710 PF01739 CheR methyltransferase, SAM binding domain CMV05_08710 PF03705 CheR methyltransferase, all-alpha domain CMV05_08715 PF01584 CheW-like domain CMV05_08720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_08720 PF12729 Four helix bundle sensory module for signal transduction CMV05_08720 PF00672 HAMP domain CMV05_08725 PF09078 CheY binding CMV05_08725 PF01584 CheW-like domain CMV05_08725 PF02895 Signal transducing histidine kinase, homodimeric domain CMV05_08725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_08725 PF01627 Hpt domain CMV05_08735 PF00072 Response regulator receiver domain CMV05_08740 PF00672 HAMP domain CMV05_08740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_08740 PF12729 Four helix bundle sensory module for signal transduction CMV05_08745 PF01966 HD domain CMV05_08745 PF00672 HAMP domain CMV05_08750 PF00155 Aminotransferase class I and II CMV05_08755 PF00571 CBS domain CMV05_08760 PF07733 Bacterial DNA polymerase III alpha NTPase domain CMV05_08760 PF02811 PHP domain CMV05_08760 PF14579 Helix-hairpin-helix motif CMV05_08760 PF14480 DNA polymerase III polC-type N-terminus I CMV05_08760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CMV05_08760 PF00929 Exonuclease CMV05_08760 PF11490 DNA polymerase III polC-type N-terminus II CMV05_08765 PF00672 HAMP domain CMV05_08765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_08765 PF02743 Cache domain CMV05_08770 PF02028 BCCT, betaine/carnitine/choline family transporter CMV05_08775 PF01047 MarR family CMV05_08790 PF00753 Metallo-beta-lactamase superfamily CMV05_08795 PF05951 Bacterial protein of unknown function (DUF882) CMV05_08800 PF01471 Putative peptidoglycan binding domain CMV05_08800 PF03734 L,D-transpeptidase catalytic domain CMV05_08825 PF00925 GTP cyclohydrolase II CMV05_08830 PF00480 ROK family CMV05_08835 PF07715 TonB-dependent Receptor Plug Domain CMV05_08835 PF04886 PT repeat CMV05_08835 PF00593 TonB dependent receptor CMV05_08840 PF01243 Pyridoxamine 5'-phosphate oxidase CMV05_08845 PF06228 Haem utilisation ChuX/HutX CMV05_08850 PF04055 Radical SAM superfamily CMV05_08860 PF01618 MotA/TolQ/ExbB proton channel family CMV05_08865 PF02472 Biopolymer transport protein ExbD/TolR CMV05_08875 PF01032 FecCD transport family CMV05_08880 PF00005 ABC transporter CMV05_08895 PF00672 HAMP domain CMV05_08895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_08900 PF08244 Glycosyl hydrolases family 32 C terminal CMV05_08900 PF00251 Glycosyl hydrolases family 32 N-terminal domain CMV05_08905 PF00356 Bacterial regulatory proteins, lacI family CMV05_08910 PF02378 Phosphotransferase system, EIIC CMV05_08910 PF00367 phosphotransferase system, EIIB CMV05_08915 PF00294 pfkB family carbohydrate kinase CMV05_08920 PF00563 EAL domain CMV05_08920 PF12792 CSS motif domain associated with EAL CMV05_08925 PF07885 Ion channel CMV05_08970 PF03553 Na+/H+ antiporter family CMV05_08975 PF00816 H-NS histone family CMV05_08995 PF04356 Protein of unknown function (DUF489) CMV05_09000 PF08328 Adenylosuccinate lyase C-terminal CMV05_09000 PF00206 Lyase CMV05_09005 PF00266 Aminotransferase class-V CMV05_09015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_09015 PF00512 His Kinase A (phospho-acceptor) domain CMV05_09015 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMV05_09030 PF04993 TfoX N-terminal domain CMV05_09030 PF04994 TfoX C-terminal domain CMV05_09040 PF03956 Lysine exporter LysO CMV05_09050 PF00282 Pyridoxal-dependent decarboxylase conserved domain CMV05_09055 PF01380 SIS domain CMV05_09055 PF01418 Helix-turn-helix domain, rpiR family CMV05_09060 PF00465 Iron-containing alcohol dehydrogenase CMV05_09065 PF00462 Glutaredoxin CMV05_09070 PF02080 TrkA-C domain CMV05_09070 PF06826 Predicted Permease Membrane Region CMV05_09075 PF01259 SAICAR synthetase CMV05_09085 PF03949 Malic enzyme, NAD binding domain CMV05_09085 PF00390 Malic enzyme, N-terminal domain CMV05_09095 PF02698 DUF218 domain CMV05_09100 PF00266 Aminotransferase class-V CMV05_09110 PF00072 Response regulator receiver domain CMV05_09110 PF00990 Diguanylate cyclase, GGDEF domain CMV05_09115 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_09120 PF00005 ABC transporter CMV05_09120 PF00664 ABC transporter transmembrane region CMV05_09125 PF00005 ABC transporter CMV05_09125 PF00664 ABC transporter transmembrane region CMV05_09130 PF00990 Diguanylate cyclase, GGDEF domain CMV05_09130 PF03707 Bacterial signalling protein N terminal repeat CMV05_09130 PF00563 EAL domain CMV05_09135 PF01479 S4 domain CMV05_09135 PF00849 RNA pseudouridylate synthase CMV05_09140 PF01300 Telomere recombination CMV05_09145 PF02811 PHP domain CMV05_09150 PF08056 Tryptophan operon leader peptide CMV05_09155 PF04715 Anthranilate synthase component I, N terminal region CMV05_09155 PF00425 chorismate binding enzyme CMV05_09160 PF00117 Glutamine amidotransferase class-I CMV05_09165 PF00591 Glycosyl transferase family, a/b domain CMV05_09165 PF02885 Glycosyl transferase family, helical bundle domain CMV05_09170 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CMV05_09170 PF00218 Indole-3-glycerol phosphate synthase CMV05_09175 PF00291 Pyridoxal-phosphate dependent enzyme CMV05_09190 PF00375 Sodium:dicarboxylate symporter family CMV05_09200 PF04279 Intracellular septation protein A CMV05_09205 PF03061 Thioesterase superfamily CMV05_09210 PF03795 YCII-related domain CMV05_09220 PF01717 Cobalamin-independent synthase, Catalytic domain CMV05_09220 PF08267 Cobalamin-independent synthase, N-terminal domain CMV05_09225 PF03466 LysR substrate binding domain CMV05_09225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_09240 PF00563 EAL domain CMV05_09240 PF00990 Diguanylate cyclase, GGDEF domain CMV05_09240 PF03707 Bacterial signalling protein N terminal repeat CMV05_09245 PF00089 Trypsin CMV05_09250 PF11842 Domain of unknown function (DUF3362) CMV05_09250 PF08497 Radical SAM N-terminal CMV05_09250 PF04055 Radical SAM superfamily CMV05_09260 PF16036 Chalcone isomerase-like CMV05_09285 PF00106 short chain dehydrogenase CMV05_09295 PF01435 Peptidase family M48 CMV05_09305 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CMV05_09305 PF09397 Ftsk gamma domain CMV05_09305 PF01580 FtsK/SpoIIIE family CMV05_09305 PF17854 FtsK alpha domain CMV05_09310 PF01037 Lrp/AsnC ligand binding domain CMV05_09315 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CMV05_09315 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CMV05_09325 PF03466 LysR substrate binding domain CMV05_09325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_09335 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CMV05_09340 PF18073 Rubredoxin metal binding domain CMV05_09345 PF06305 Lipopolysaccharide assembly protein A domain CMV05_09355 PF00575 S1 RNA binding domain CMV05_09360 PF02224 Cytidylate kinase CMV05_09370 PF13145 PPIC-type PPIASE domain CMV05_09375 PF00216 Bacterial DNA-binding protein CMV05_09380 PF00004 ATPase family associated with various cellular activities (AAA) CMV05_09380 PF05362 Lon protease (S16) C-terminal proteolytic domain CMV05_09380 PF02190 ATP-dependent protease La (LON) substrate-binding domain CMV05_09385 PF06689 ClpX C4-type zinc finger CMV05_09385 PF10431 C-terminal, D2-small domain, of ClpB protein CMV05_09385 PF07724 AAA domain (Cdc48 subfamily) CMV05_09390 PF00574 Clp protease CMV05_09395 PF05697 Bacterial trigger factor protein (TF) CMV05_09395 PF05698 Bacterial trigger factor protein (TF) C-terminus CMV05_09395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CMV05_09405 PF00512 His Kinase A (phospho-acceptor) domain CMV05_09405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_09405 PF02743 Cache domain CMV05_09410 PF00158 Sigma-54 interaction domain CMV05_09410 PF00072 Response regulator receiver domain CMV05_09410 PF02954 Bacterial regulatory protein, Fis family CMV05_09415 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CMV05_09440 PF00672 HAMP domain CMV05_09440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_09440 PF00512 His Kinase A (phospho-acceptor) domain CMV05_09445 PF00072 Response regulator receiver domain CMV05_09445 PF00486 Transcriptional regulatory protein, C terminal CMV05_09450 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CMV05_09455 PF03313 Serine dehydratase alpha chain CMV05_09455 PF03315 Serine dehydratase beta chain CMV05_09465 PF00270 DEAD/DEAH box helicase CMV05_09465 PF00271 Helicase conserved C-terminal domain CMV05_09470 PF16657 Maltogenic Amylase, C-terminal domain CMV05_09470 PF00128 Alpha amylase, catalytic domain CMV05_09470 PF02903 Alpha amylase, N-terminal ig-like domain CMV05_09475 PF02028 BCCT, betaine/carnitine/choline family transporter CMV05_09480 PF02574 Homocysteine S-methyltransferase CMV05_09480 PF02965 Vitamin B12 dependent methionine synthase, activation domain CMV05_09480 PF02607 B12 binding domain CMV05_09480 PF00809 Pterin binding enzyme CMV05_09480 PF02310 B12 binding domain CMV05_09490 PF09905 DNA-binding protein VF530 CMV05_09495 PF01551 Peptidase family M23 CMV05_09505 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CMV05_09505 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CMV05_09510 PF00704 Glycosyl hydrolases family 18 CMV05_09510 PF06483 Chitinase C CMV05_09515 PF07670 Nucleoside recognition CMV05_09515 PF07662 Na+ dependent nucleoside transporter C-terminus CMV05_09515 PF01773 Na+ dependent nucleoside transporter N-terminus CMV05_09520 PF03466 LysR substrate binding domain CMV05_09520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_09525 PF13406 Transglycosylase SLT domain CMV05_09530 PF05166 YcgL domain CMV05_09535 PF05209 Septum formation inhibitor MinC, N-terminal domain CMV05_09535 PF03775 Septum formation inhibitor MinC, C-terminal domain CMV05_09540 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CMV05_09545 PF03776 Septum formation topological specificity factor MinE CMV05_09550 PF00570 HRDC domain CMV05_09550 PF01612 3'-5' exonuclease CMV05_09555 PF13193 AMP-binding enzyme C-terminal domain CMV05_09555 PF00501 AMP-binding enzyme CMV05_09560 PF00561 alpha/beta hydrolase fold CMV05_09575 PF00814 Glycoprotease family CMV05_09580 PF13307 Helicase C-terminal domain CMV05_09580 PF04851 Type III restriction enzyme, res subunit CMV05_09590 PF00551 Formyl transferase CMV05_09590 PF01842 ACT domain CMV05_09595 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_09595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CMV05_09600 PF01343 Peptidase family S49 CMV05_09605 PF00710 Asparaginase, N-terminal CMV05_09605 PF17763 Glutaminase/Asparaginase C-terminal domain CMV05_09610 PF07023 Protein of unknown function (DUF1315) CMV05_09620 PF01641 SelR domain CMV05_09625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CMV05_09625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CMV05_09630 PF01263 Aldose 1-epimerase CMV05_09635 PF13847 Methyltransferase domain CMV05_09670 PF03050 Transposase IS66 family CMV05_09670 PF13817 IS66 C-terminal element CMV05_09670 PF13007 Transposase C of IS166 homeodomain CMV05_09670 PF13005 zinc-finger binding domain of transposase IS66 CMV05_09680 PF13817 IS66 C-terminal element CMV05_09680 PF03050 Transposase IS66 family CMV05_09680 PF13007 Transposase C of IS166 homeodomain CMV05_09680 PF13005 zinc-finger binding domain of transposase IS66 CMV05_09710 PF03692 Putative zinc- or iron-chelating domain CMV05_09720 PF02575 YbaB/EbfC DNA-binding family CMV05_09725 PF12169 DNA polymerase III subunits gamma and tau domain III CMV05_09725 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CMV05_09725 PF12170 DNA polymerase III tau subunit V interacting with alpha CMV05_09730 PF00156 Phosphoribosyl transferase domain CMV05_09735 PF04304 Protein of unknown function (DUF454) CMV05_09745 PF00072 Response regulator receiver domain CMV05_09750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_09750 PF03466 LysR substrate binding domain CMV05_09755 PF00881 Nitroreductase family CMV05_09760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CMV05_09760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CMV05_09760 PF00378 Enoyl-CoA hydratase/isomerase CMV05_09765 PF00108 Thiolase, N-terminal domain CMV05_09765 PF02803 Thiolase, C-terminal domain CMV05_09780 PF08281 Sigma-70, region 4 CMV05_09780 PF04542 Sigma-70 region 2 CMV05_09790 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CMV05_09795 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CMV05_09800 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CMV05_09800 PF12557 Cob(I)alamin adenosyltransferase N terminal CMV05_09805 PF05170 AsmA family CMV05_09810 PF00485 Phosphoribulokinase / Uridine kinase family CMV05_09815 PF10609 NUBPL iron-transfer P-loop NTPase CMV05_09820 PF09334 tRNA synthetases class I (M) CMV05_09820 PF01588 Putative tRNA binding domain CMV05_09830 PF01048 Phosphorylase superfamily CMV05_09835 PF00403 Heavy-metal-associated domain CMV05_09840 PF03061 Thioesterase superfamily CMV05_09840 PF00571 CBS domain CMV05_09840 PF07085 DRTGG domain CMV05_09840 PF00392 Bacterial regulatory proteins, gntR family CMV05_09850 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_09850 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_09850 PF01610 Transposase CMV05_09860 PF13358 DDE superfamily endonuclease CMV05_09890 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_09890 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_09890 PF01610 Transposase CMV05_09905 PF02391 MoaE protein CMV05_09910 PF02597 ThiS family CMV05_09915 PF01967 MoaC family CMV05_09920 PF00994 Probable molybdopterin binding domain CMV05_09925 PF06463 Molybdenum Cofactor Synthesis C CMV05_09925 PF04055 Radical SAM superfamily CMV05_09930 PF01933 Uncharacterised protein family UPF0052 CMV05_09935 PF01627 Hpt domain CMV05_09940 PF02954 Bacterial regulatory protein, Fis family CMV05_09940 PF00072 Response regulator receiver domain CMV05_09940 PF00158 Sigma-54 interaction domain CMV05_09945 PF04851 Type III restriction enzyme, res subunit CMV05_09945 PF17757 UvrB interaction domain CMV05_09945 PF00271 Helicase conserved C-terminal domain CMV05_09945 PF12344 Ultra-violet resistance protein B CMV05_09945 PF02151 UvrB/uvrC motif CMV05_09970 PF13007 Transposase C of IS166 homeodomain CMV05_09970 PF13005 zinc-finger binding domain of transposase IS66 CMV05_09970 PF03050 Transposase IS66 family CMV05_09970 PF13817 IS66 C-terminal element CMV05_09980 PF00872 Transposase, Mutator family CMV05_09995 PF00005 ABC transporter CMV05_10030 PF00293 NUDIX domain CMV05_10050 PF13358 DDE superfamily endonuclease CMV05_10065 PF07840 FadR C-terminal domain CMV05_10065 PF00392 Bacterial regulatory proteins, gntR family CMV05_10070 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CMV05_10085 PF08241 Methyltransferase domain CMV05_10090 PF00155 Aminotransferase class I and II CMV05_10095 PF06968 Biotin and Thiamin Synthesis associated domain CMV05_10095 PF04055 Radical SAM superfamily CMV05_10100 PF00202 Aminotransferase class-III CMV05_10105 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CMV05_10105 PF02403 Seryl-tRNA synthetase N-terminal domain CMV05_10110 PF00004 ATPase family associated with various cellular activities (AAA) CMV05_10110 PF16193 AAA C-terminal domain CMV05_10110 PF12002 MgsA AAA+ ATPase C terminal CMV05_10115 PF03548 Outer membrane lipoprotein carrier protein LolA CMV05_10120 PF02810 SEC-C motif CMV05_10120 PF07516 SecA Wing and Scaffold domain CMV05_10120 PF07517 SecA DEAD-like domain CMV05_10120 PF01043 SecA preprotein cross-linking domain CMV05_10125 PF01207 Dihydrouridine synthase (Dus) CMV05_10130 PF00005 ABC transporter CMV05_10135 PF02653 Branched-chain amino acid transport system / permease component CMV05_10145 PF04217 Protein of unknown function, DUF412 CMV05_10150 PF00871 Acetokinase family CMV05_10155 PF01515 Phosphate acetyl/butaryl transferase CMV05_10155 PF07085 DRTGG domain CMV05_10160 PF13409 Glutathione S-transferase, N-terminal domain CMV05_10165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMV05_10165 PF00005 ABC transporter CMV05_10170 PF00005 ABC transporter CMV05_10170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMV05_10175 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_10175 PF12911 N-terminal TM domain of oligopeptide transport permease C CMV05_10180 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_10185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMV05_10190 PF03707 Bacterial signalling protein N terminal repeat CMV05_10190 PF00990 Diguanylate cyclase, GGDEF domain CMV05_10190 PF00563 EAL domain CMV05_10195 PF00512 His Kinase A (phospho-acceptor) domain CMV05_10195 PF00072 Response regulator receiver domain CMV05_10195 PF09308 LuxQ, periplasmic CMV05_10195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_10215 PF01081 KDPG and KHG aldolase CMV05_10220 PF02447 GntP family permease CMV05_10225 PF01202 Shikimate kinase CMV05_10230 PF00920 Dehydratase family CMV05_10235 PF00356 Bacterial regulatory proteins, lacI family CMV05_10235 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CMV05_10250 PF00512 His Kinase A (phospho-acceptor) domain CMV05_10250 PF00672 HAMP domain CMV05_10250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_10255 PF00072 Response regulator receiver domain CMV05_10255 PF00486 Transcriptional regulatory protein, C terminal CMV05_10260 PF02080 TrkA-C domain CMV05_10260 PF06826 Predicted Permease Membrane Region CMV05_10265 PF01810 LysE type translocator CMV05_10270 PF01037 Lrp/AsnC ligand binding domain CMV05_10275 PF00884 Sulfatase CMV05_10275 PF08019 Phosphoethanolamine transferase EptA/EptB CMV05_10280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_10280 PF00512 His Kinase A (phospho-acceptor) domain CMV05_10280 PF08521 Two-component sensor kinase N-terminal CMV05_10285 PF00486 Transcriptional regulatory protein, C terminal CMV05_10285 PF00072 Response regulator receiver domain CMV05_10295 PF00106 short chain dehydrogenase CMV05_10305 PF00501 AMP-binding enzyme CMV05_10325 PF03050 Transposase IS66 family CMV05_10325 PF13007 Transposase C of IS166 homeodomain CMV05_10325 PF13817 IS66 C-terminal element CMV05_10325 PF13005 zinc-finger binding domain of transposase IS66 CMV05_10345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_10345 PF03466 LysR substrate binding domain CMV05_10370 PF02796 Helix-turn-helix domain of resolvase CMV05_10370 PF00239 Resolvase, N terminal domain CMV05_10375 PF01381 Helix-turn-helix CMV05_10415 PF00990 Diguanylate cyclase, GGDEF domain CMV05_10425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CMV05_10445 PF13404 AsnC-type helix-turn-helix domain CMV05_10445 PF01037 Lrp/AsnC ligand binding domain CMV05_10450 PF00291 Pyridoxal-phosphate dependent enzyme CMV05_10465 PF07690 Major Facilitator Superfamily CMV05_10480 PF00501 AMP-binding enzyme CMV05_10485 PF13378 Enolase C-terminal domain-like CMV05_10490 PF00378 Enoyl-CoA hydratase/isomerase CMV05_10495 PF12697 Alpha/beta hydrolase family CMV05_10500 PF16582 Middle domain of thiamine pyrophosphate CMV05_10500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CMV05_10500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CMV05_10505 PF00425 chorismate binding enzyme CMV05_10515 PF00155 Aminotransferase class I and II CMV05_10530 PF01966 HD domain CMV05_10530 PF13286 Phosphohydrolase-associated domain CMV05_10545 PF01343 Peptidase family S49 CMV05_10545 PF08496 Peptidase family S49 N-terminal CMV05_10550 PF00106 short chain dehydrogenase CMV05_10555 PF01584 CheW-like domain CMV05_10555 PF00072 Response regulator receiver domain CMV05_10560 PF00480 ROK family CMV05_10565 PF02887 Pyruvate kinase, alpha/beta domain CMV05_10565 PF00224 Pyruvate kinase, barrel domain CMV05_10570 PF01734 Patatin-like phospholipase CMV05_10585 PF00209 Sodium:neurotransmitter symporter family CMV05_10595 PF00367 phosphotransferase system, EIIB CMV05_10595 PF02378 Phosphotransferase system, EIIC CMV05_10605 PF01026 TatD related DNase CMV05_10610 PF09115 DNA polymerase III, delta subunit, C terminal CMV05_10615 PF02223 Thymidylate kinase CMV05_10620 PF02618 YceG-like family CMV05_10625 PF01063 Amino-transferase class IV CMV05_10630 PF00109 Beta-ketoacyl synthase, N-terminal domain CMV05_10630 PF02801 Beta-ketoacyl synthase, C-terminal domain CMV05_10635 PF00550 Phosphopantetheine attachment site CMV05_10645 PF00698 Acyl transferase domain CMV05_10650 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CMV05_10650 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CMV05_10655 PF02504 Fatty acid synthesis protein CMV05_10660 PF01783 Ribosomal L32p protein family CMV05_10665 PF02620 Large ribosomal RNA subunit accumulation protein YceD CMV05_10670 PF02545 Maf-like protein CMV05_10675 PF01479 S4 domain CMV05_10675 PF00849 RNA pseudouridylate synthase CMV05_10680 PF12111 Polyribonucleotide phosphorylase C terminal CMV05_10680 PF00575 S1 RNA binding domain CMV05_10680 PF10150 Ribonuclease E/G family CMV05_10690 PF00171 Aldehyde dehydrogenase family CMV05_10690 PF00465 Iron-containing alcohol dehydrogenase CMV05_10695 PF01914 MarC family integral membrane protein CMV05_10700 PF01118 Semialdehyde dehydrogenase, NAD binding domain CMV05_10700 PF02774 Semialdehyde dehydrogenase, dimerisation domain CMV05_10705 PF03553 Na+/H+ antiporter family CMV05_10710 PF01609 Transposase DDE domain CMV05_10710 PF13006 Insertion element 4 transposase N-terminal CMV05_10720 PF04245 37-kD nucleoid-associated bacterial protein CMV05_10725 PF07208 Protein of unknown function (DUF1414) CMV05_10730 PF00884 Sulfatase CMV05_10730 PF11893 Domain of unknown function (DUF3413) CMV05_10740 PF00384 Molybdopterin oxidoreductase CMV05_10745 PF02634 FdhD/NarQ family CMV05_10760 PF01751 Toprim domain CMV05_10760 PF01131 DNA topoisomerase CMV05_10765 PF00462 Glutaredoxin CMV05_10770 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CMV05_10770 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CMV05_10785 PF04333 MlaA lipoprotein CMV05_10795 PF03918 Cytochrome C biogenesis protein CMV05_10800 PF08534 Redoxin CMV05_10805 PF01578 Cytochrome C assembly protein CMV05_10805 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CMV05_10810 PF03100 CcmE CMV05_10820 PF01578 Cytochrome C assembly protein CMV05_10825 PF03379 CcmB protein CMV05_10830 PF00005 ABC transporter CMV05_10840 PF01584 CheW-like domain CMV05_10850 PF13614 AAA domain CMV05_10855 PF01339 CheB methylesterase CMV05_10855 PF00072 Response regulator receiver domain CMV05_10860 PF01627 Hpt domain CMV05_10860 PF01584 CheW-like domain CMV05_10860 PF07194 P2 response regulator binding domain CMV05_10860 PF02895 Signal transducing histidine kinase, homodimeric domain CMV05_10860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_10865 PF04344 Chemotaxis phosphatase, CheZ CMV05_10870 PF00072 Response regulator receiver domain CMV05_10875 PF04539 Sigma-70 region 3 CMV05_10875 PF04542 Sigma-70 region 2 CMV05_10875 PF04545 Sigma-70, region 4 CMV05_10880 PF10609 NUBPL iron-transfer P-loop NTPase CMV05_10885 PF00448 SRP54-type protein, GTPase domain CMV05_10890 PF00771 FHIPEP family CMV05_10895 PF00300 Histidine phosphatase superfamily (branch 1) CMV05_10900 PF00675 Insulinase (Peptidase family M16) CMV05_10900 PF05193 Peptidase M16 inactive domain CMV05_10905 PF06185 YecM protein CMV05_10910 PF00750 tRNA synthetases class I (R) CMV05_10910 PF05746 DALR anticodon binding domain CMV05_10910 PF03485 Arginyl tRNA synthetase N terminal domain CMV05_10925 PF17910 FeoB cytosolic helical domain CMV05_10925 PF07664 Ferrous iron transport protein B C terminus CMV05_10925 PF07670 Nucleoside recognition CMV05_10925 PF02421 Ferrous iron transport protein B CMV05_10930 PF04023 FeoA domain CMV05_10945 PF01297 Zinc-uptake complex component A periplasmic CMV05_10950 PF00005 ABC transporter CMV05_10955 PF00950 ABC 3 transport family CMV05_10960 PF00549 CoA-ligase CMV05_10960 PF02629 CoA binding domain CMV05_10965 PF08442 ATP-grasp domain CMV05_10965 PF00549 CoA-ligase CMV05_10970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CMV05_10970 PF02817 e3 binding domain CMV05_10970 PF00364 Biotin-requiring enzyme CMV05_10975 PF02779 Transketolase, pyrimidine binding domain CMV05_10975 PF16078 2-oxoglutarate dehydrogenase N-terminus CMV05_10975 PF00676 Dehydrogenase E1 component CMV05_10975 PF16870 2-oxoglutarate dehydrogenase C-terminal CMV05_10980 PF13085 2Fe-2S iron-sulfur cluster binding domain CMV05_10985 PF00890 FAD binding domain CMV05_10985 PF02910 Fumarate reductase flavoprotein C-term CMV05_10990 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CMV05_10995 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CMV05_11000 PF00285 Citrate synthase, C-terminal domain CMV05_11005 PF01784 NIF3 (NGG1p interacting factor 3) CMV05_11015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CMV05_11015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CMV05_11015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMV05_11015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CMV05_11020 PF17206 SeqA protein N-terminal domain CMV05_11020 PF03925 SeqA protein C-terminal domain CMV05_11025 PF12697 Alpha/beta hydrolase family CMV05_11035 PF00258 Flavodoxin CMV05_11040 PF04172 LrgB-like family CMV05_11045 PF03788 LrgA family CMV05_11050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_11050 PF03466 LysR substrate binding domain CMV05_11060 PF01475 Ferric uptake regulator family CMV05_11065 PF01118 Semialdehyde dehydrogenase, NAD binding domain CMV05_11065 PF02774 Semialdehyde dehydrogenase, dimerisation domain CMV05_11070 PF11890 Domain of unknown function (DUF3410) CMV05_11070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CMV05_11070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CMV05_11075 PF02801 Beta-ketoacyl synthase, C-terminal domain CMV05_11075 PF00109 Beta-ketoacyl synthase, N-terminal domain CMV05_11080 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CMV05_11080 PF01266 FAD dependent oxidoreductase CMV05_11085 PF03358 NADPH-dependent FMN reductase CMV05_11090 PF08891 YfcL protein CMV05_11095 PF04315 Elongation factor P hydroxylase CMV05_11100 PF01610 Transposase CMV05_11100 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_11100 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_11105 PF03458 UPF0126 domain CMV05_11110 PF01264 Chorismate synthase CMV05_11120 PF05175 Methyltransferase small domain CMV05_11125 PF01713 Smr domain CMV05_11130 PF01312 FlhB HrpN YscU SpaS Family CMV05_11135 PF01311 Bacterial export proteins, family 1 CMV05_11140 PF01313 Bacterial export proteins, family 3 CMV05_11145 PF00813 FliP family CMV05_11150 PF04347 Flagellar biosynthesis protein, FliO CMV05_11155 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CMV05_11160 PF02154 Flagellar motor switch protein FliM CMV05_11160 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CMV05_11180 PF18269 T3SS EscN ATPase C-terminal domain CMV05_11180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CMV05_11190 PF14842 FliG N-terminal domain CMV05_11190 PF01706 FliG C-terminal domain CMV05_11190 PF14841 FliG middle domain CMV05_11195 PF08345 Flagellar M-ring protein C-terminal CMV05_11195 PF01514 Secretory protein of YscJ/FliF family CMV05_11200 PF02049 Flagellar hook-basal body complex protein FliE CMV05_11205 PF02954 Bacterial regulatory protein, Fis family CMV05_11205 PF00072 Response regulator receiver domain CMV05_11205 PF00158 Sigma-54 interaction domain CMV05_11210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_11210 PF00512 His Kinase A (phospho-acceptor) domain CMV05_11215 PF00072 Response regulator receiver domain CMV05_11215 PF02954 Bacterial regulatory protein, Fis family CMV05_11215 PF00158 Sigma-54 interaction domain CMV05_11220 PF02561 Flagellar protein FliS CMV05_11230 PF07196 Flagellin hook IN motif CMV05_11230 PF07195 Flagellar hook-associated protein 2 C-terminus CMV05_11230 PF02465 Flagellar hook-associated protein 2 N-terminus CMV05_11235 PF03646 FlaG protein CMV05_11240 PF00700 Bacterial flagellin C-terminal helical region CMV05_11240 PF00669 Bacterial flagellin N-terminal helical region CMV05_11240 PF07196 Flagellin hook IN motif CMV05_11245 PF00669 Bacterial flagellin N-terminal helical region CMV05_11245 PF07196 Flagellin hook IN motif CMV05_11245 PF00700 Bacterial flagellin C-terminal helical region CMV05_11250 PF00700 Bacterial flagellin C-terminal helical region CMV05_11250 PF00669 Bacterial flagellin N-terminal helical region CMV05_11250 PF07196 Flagellin hook IN motif CMV05_11255 PF04261 Dyp-type peroxidase family CMV05_11260 PF11143 Protein of unknown function (DUF2919) CMV05_11280 PF03960 ArsC family CMV05_11285 PF07687 Peptidase dimerisation domain CMV05_11285 PF01546 Peptidase family M20/M25/M40 CMV05_11305 PF00701 Dihydrodipicolinate synthetase family CMV05_11330 PF13358 DDE superfamily endonuclease CMV05_11335 PF13808 DDE_Tnp_1-associated CMV05_11335 PF01609 Transposase DDE domain CMV05_11350 PF00578 AhpC/TSA family CMV05_11365 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_11375 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_11380 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_11380 PF01610 Transposase CMV05_11380 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_11385 PF00578 AhpC/TSA family CMV05_11390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_11390 PF02743 Cache domain CMV05_11390 PF00672 HAMP domain CMV05_11395 PF01594 AI-2E family transporter CMV05_11405 PF01435 Peptidase family M48 CMV05_11405 PF13181 Tetratricopeptide repeat CMV05_11410 PF03960 ArsC family CMV05_11415 PF03358 NADPH-dependent FMN reductase CMV05_11430 PF00860 Permease family CMV05_11435 PF04073 Aminoacyl-tRNA editing domain CMV05_11440 PF01609 Transposase DDE domain CMV05_11440 PF13006 Insertion element 4 transposase N-terminal CMV05_11445 PF00149 Calcineurin-like phosphoesterase CMV05_11445 PF02872 5'-nucleotidase, C-terminal domain CMV05_11450 PF00793 DAHP synthetase I family CMV05_11455 PF13369 Transglutaminase-like superfamily CMV05_11460 PF04247 Invasion gene expression up-regulator, SirB CMV05_11465 PF13847 Methyltransferase domain CMV05_11465 PF17827 PrmC N-terminal domain CMV05_11470 PF00472 RF-1 domain CMV05_11470 PF03462 PCRF domain CMV05_11475 PF01488 Shikimate / quinate 5-dehydrogenase CMV05_11475 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CMV05_11475 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CMV05_11480 PF03550 Outer membrane lipoprotein LolB CMV05_11485 PF08544 GHMP kinases C terminal CMV05_11485 PF00288 GHMP kinases N terminal domain CMV05_11490 PF14572 Phosphoribosyl synthetase-associated domain CMV05_11490 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CMV05_11495 PF01195 Peptidyl-tRNA hydrolase CMV05_11500 PF01926 50S ribosome-binding GTPase CMV05_11500 PF06071 Protein of unknown function (DUF933) CMV05_11585 PF00700 Bacterial flagellin C-terminal helical region CMV05_11585 PF07196 Flagellin hook IN motif CMV05_11585 PF00669 Bacterial flagellin N-terminal helical region CMV05_11590 PF00669 Bacterial flagellin N-terminal helical region CMV05_11590 PF07196 Flagellin hook IN motif CMV05_11590 PF00700 Bacterial flagellin C-terminal helical region CMV05_11600 PF00669 Bacterial flagellin N-terminal helical region CMV05_11605 PF07196 Flagellin hook IN motif CMV05_11605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CMV05_11610 PF10135 Rod binding protein CMV05_11610 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CMV05_11615 PF02119 Flagellar P-ring protein CMV05_11620 PF02107 Flagellar L-ring protein CMV05_11625 PF00460 Flagella basal body rod protein CMV05_11625 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CMV05_11630 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CMV05_11630 PF00460 Flagella basal body rod protein CMV05_11635 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CMV05_11635 PF00460 Flagella basal body rod protein CMV05_11635 PF07559 Flagellar basal body protein FlaE CMV05_11640 PF13860 FlgD Ig-like domain CMV05_11640 PF03963 Flagellar hook capping protein - N-terminal region CMV05_11640 PF13861 FlgD Tudor-like domain CMV05_11645 PF00460 Flagella basal body rod protein CMV05_11645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CMV05_11650 PF00460 Flagella basal body rod protein CMV05_11655 PF01739 CheR methyltransferase, SAM binding domain CMV05_11655 PF03705 CheR methyltransferase, all-alpha domain CMV05_11660 PF00072 Response regulator receiver domain CMV05_11660 PF01584 CheW-like domain CMV05_11670 PF04316 Anti-sigma-28 factor, FlgM CMV05_11705 PF01389 OmpA-like transmembrane domain CMV05_11705 PF00691 OmpA family CMV05_11710 PF00749 tRNA synthetases class I (E and Q), catalytic domain CMV05_11715 PF00403 Heavy-metal-associated domain CMV05_11725 PF00728 Glycosyl hydrolase family 20, catalytic domain CMV05_11725 PF02838 Glycosyl hydrolase family 20, domain 2 CMV05_11725 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CMV05_11725 PF03173 Putative carbohydrate binding domain CMV05_11740 PF01479 S4 domain CMV05_11740 PF00849 RNA pseudouridylate synthase CMV05_11750 PF02769 AIR synthase related protein, C-terminal domain CMV05_11750 PF00586 AIR synthase related protein, N-terminal domain CMV05_11755 PF00551 Formyl transferase CMV05_11760 PF13230 Glutamine amidotransferases class-II CMV05_11765 PF13580 SIS domain CMV05_11770 PF09317 Domain of unknown function (DUF1974) CMV05_11770 PF02770 Acyl-CoA dehydrogenase, middle domain CMV05_11770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CMV05_11770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CMV05_11780 PF00929 Exonuclease CMV05_11785 PF00075 RNase H CMV05_11790 PF08241 Methyltransferase domain CMV05_11795 PF16123 Hydroxyacylglutathione hydrolase C-terminus CMV05_11795 PF00753 Metallo-beta-lactamase superfamily CMV05_11800 PF01464 Transglycosylase SLT domain CMV05_11800 PF01476 LysM domain CMV05_11810 PF03372 Endonuclease/Exonuclease/phosphatase family CMV05_11815 PF00543 Nitrogen regulatory protein P-II CMV05_11820 PF00034 Cytochrome c CMV05_11825 PF11734 TilS substrate C-terminal domain CMV05_11825 PF01171 PP-loop family CMV05_11825 PF09179 TilS substrate binding domain CMV05_11830 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CMV05_11835 PF01336 OB-fold nucleic acid binding domain CMV05_11835 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CMV05_11835 PF14579 Helix-hairpin-helix motif CMV05_11835 PF07733 Bacterial DNA polymerase III alpha NTPase domain CMV05_11835 PF02811 PHP domain CMV05_11840 PF01351 Ribonuclease HII CMV05_11845 PF02684 Lipid-A-disaccharide synthetase CMV05_11850 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CMV05_11850 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_11855 PF07977 FabA-like domain CMV05_11860 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_11860 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CMV05_11865 PF03938 Outer membrane protein (OmpH-like) CMV05_11870 PF01103 Surface antigen CMV05_11870 PF07244 Surface antigen variable number repeat CMV05_11875 PF17820 PDZ domain CMV05_11875 PF02163 Peptidase family M50 CMV05_11880 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CMV05_11880 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CMV05_11880 PF13288 DXP reductoisomerase C-terminal domain CMV05_11890 PF01255 Putative undecaprenyl diphosphate synthase CMV05_11895 PF01765 Ribosome recycling factor CMV05_11900 PF00696 Amino acid kinase family CMV05_11905 PF00889 Elongation factor TS CMV05_11910 PF00318 Ribosomal protein S2 CMV05_11915 PF00557 Metallopeptidase family M24 CMV05_11925 PF11944 Protein of unknown function (DUF3461) CMV05_11930 PF00872 Transposase, Mutator family CMV05_11935 PF04608 Phosphatidylglycerophosphatase A CMV05_11940 PF00586 AIR synthase related protein, N-terminal domain CMV05_11940 PF02769 AIR synthase related protein, C-terminal domain CMV05_11950 PF00885 6,7-dimethyl-8-ribityllumazine synthase CMV05_11955 PF13006 Insertion element 4 transposase N-terminal CMV05_11955 PF01609 Transposase DDE domain CMV05_11960 PF01609 Transposase DDE domain CMV05_11960 PF02281 Transposase Tn5 dimerisation domain CMV05_11960 PF14706 Transposase DNA-binding CMV05_11965 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CMV05_11965 PF00925 GTP cyclohydrolase II CMV05_11970 PF00677 Lumazine binding domain CMV05_11975 PF01872 RibD C-terminal domain CMV05_11975 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CMV05_11980 PF03477 ATP cone domain CMV05_11985 PF00171 Aldehyde dehydrogenase family CMV05_11990 PF01472 PUA domain CMV05_11990 PF00696 Amino acid kinase family CMV05_11995 PF07417 Sigma factor-binding transcriptional regulator Crl CMV05_12010 PF00860 Permease family CMV05_12015 PF01546 Peptidase family M20/M25/M40 CMV05_12015 PF07687 Peptidase dimerisation domain CMV05_12020 PF08443 RimK-like ATP-grasp domain CMV05_12020 PF18030 RimK PreATP-grasp domain CMV05_12025 PF18030 RimK PreATP-grasp domain CMV05_12025 PF08443 RimK-like ATP-grasp domain CMV05_12035 PF00209 Sodium:neurotransmitter symporter family CMV05_12040 PF01590 GAF domain CMV05_12040 PF00563 EAL domain CMV05_12040 PF00990 Diguanylate cyclase, GGDEF domain CMV05_12040 PF00360 Phytochrome region CMV05_12050 PF00817 impB/mucB/samB family CMV05_12050 PF11798 IMS family HHH motif CMV05_12050 PF11799 impB/mucB/samB family C-terminal domain CMV05_12065 PF02424 ApbE family CMV05_12070 PF00111 2Fe-2S iron-sulfur cluster binding domain CMV05_12070 PF00175 Oxidoreductase NAD-binding domain CMV05_12070 PF00970 Oxidoreductase FAD-binding domain CMV05_12075 PF02508 Rnf-Nqr subunit, membrane protein CMV05_12080 PF02508 Rnf-Nqr subunit, membrane protein CMV05_12085 PF04205 FMN-binding domain CMV05_12090 PF03116 NQR2, RnfD, RnfE family CMV05_12095 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CMV05_12095 PF11973 NQRA C-terminal domain CMV05_12100 PF01722 BolA-like protein CMV05_12105 PF05175 Methyltransferase small domain CMV05_12115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CMV05_12120 PF07690 Major Facilitator Superfamily CMV05_12125 PF01609 Transposase DDE domain CMV05_12125 PF13006 Insertion element 4 transposase N-terminal CMV05_12135 PF04542 Sigma-70 region 2 CMV05_12135 PF04545 Sigma-70, region 4 CMV05_12145 PF03502 Nucleoside-specific channel-forming protein, Tsx CMV05_12150 PF02558 Ketopantoate reductase PanE/ApbA CMV05_12150 PF08546 Ketopantoate reductase PanE/ApbA C terminal CMV05_12155 PF01965 DJ-1/PfpI family CMV05_12160 PF00266 Aminotransferase class-V CMV05_12165 PF02657 Fe-S metabolism associated domain CMV05_12170 PF00899 ThiF family CMV05_12175 PF03562 MltA specific insert domain CMV05_12175 PF06725 3D domain CMV05_12195 PF00583 Acetyltransferase (GNAT) family CMV05_12195 PF00696 Amino acid kinase family CMV05_12200 PF13358 DDE superfamily endonuclease CMV05_12210 PF13538 UvrD-like helicase C-terminal domain CMV05_12215 PF13361 UvrD-like helicase C-terminal domain CMV05_12215 PF00580 UvrD/REP helicase N-terminal domain CMV05_12215 PF12705 PD-(D/E)XK nuclease superfamily CMV05_12220 PF17946 RecC C-terminal domain CMV05_12235 PF07130 YebG protein CMV05_12240 PF14602 Hexapeptide repeat of succinyl-transferase CMV05_12240 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle CMV05_12250 PF00583 Acetyltransferase (GNAT) family CMV05_12260 PF01544 CorA-like Mg2+ transporter protein CMV05_12270 PF00356 Bacterial regulatory proteins, lacI family CMV05_12275 PF08544 GHMP kinases C terminal CMV05_12275 PF00288 GHMP kinases N terminal domain CMV05_12275 PF10509 Galactokinase galactose-binding signature CMV05_12280 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CMV05_12280 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CMV05_12285 PF16363 GDP-mannose 4,6 dehydratase CMV05_12290 PF01554 MatE CMV05_12300 PF11849 Domain of unknown function (DUF3369) CMV05_12305 PF00501 AMP-binding enzyme CMV05_12310 PF09905 DNA-binding protein VF530 CMV05_12315 PF03144 Elongation factor Tu domain 2 CMV05_12315 PF00009 Elongation factor Tu GTP binding domain CMV05_12315 PF03764 Elongation factor G, domain IV CMV05_12315 PF14492 Elongation Factor G, domain II CMV05_12315 PF00679 Elongation factor G C-terminus CMV05_12320 PF18073 Rubredoxin metal binding domain CMV05_12330 PF18429 Domain of unknown function (DUF5609) CMV05_12340 PF01048 Phosphorylase superfamily CMV05_12345 PF01676 Metalloenzyme superfamily CMV05_12350 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CMV05_12350 PF02885 Glycosyl transferase family, helical bundle domain CMV05_12350 PF00591 Glycosyl transferase family, a/b domain CMV05_12355 PF01791 DeoC/LacD family aldolase CMV05_12360 PF07670 Nucleoside recognition CMV05_12360 PF07662 Na+ dependent nucleoside transporter C-terminus CMV05_12360 PF01773 Na+ dependent nucleoside transporter N-terminus CMV05_12365 PF01026 TatD related DNase CMV05_12375 PF01235 Sodium:alanine symporter family CMV05_12390 PF03167 Uracil DNA glycosylase superfamily CMV05_12395 PF01261 Xylose isomerase-like TIM barrel CMV05_12400 PF01228 Glycine radical CMV05_12405 PF14821 Threonine synthase N terminus CMV05_12405 PF00291 Pyridoxal-phosphate dependent enzyme CMV05_12410 PF08544 GHMP kinases C terminal CMV05_12410 PF00288 GHMP kinases N terminal domain CMV05_12415 PF13840 ACT domain CMV05_12415 PF00742 Homoserine dehydrogenase CMV05_12415 PF01842 ACT domain CMV05_12415 PF03447 Homoserine dehydrogenase, NAD binding domain CMV05_12415 PF00696 Amino acid kinase family CMV05_12425 PF03737 Aldolase/RraA CMV05_12430 PF00486 Transcriptional regulatory protein, C terminal CMV05_12430 PF00072 Response regulator receiver domain CMV05_12440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_12440 PF00512 His Kinase A (phospho-acceptor) domain CMV05_12440 PF18415 Histidine kinase receptor ArcB trans-membrane domain CMV05_12440 PF00072 Response regulator receiver domain CMV05_12440 PF01627 Hpt domain CMV05_12440 PF00989 PAS fold CMV05_12445 PF04055 Radical SAM superfamily CMV05_12445 PF16199 Radical_SAM C-terminal domain CMV05_12450 PF01645 Conserved region in glutamate synthase CMV05_12450 PF00310 Glutamine amidotransferases class-II CMV05_12450 PF04898 Glutamate synthase central domain CMV05_12450 PF01493 GXGXG motif CMV05_12455 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_12455 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CMV05_12460 PF01493 GXGXG motif CMV05_12460 PF01645 Conserved region in glutamate synthase CMV05_12460 PF04898 Glutamate synthase central domain CMV05_12460 PF00310 Glutamine amidotransferases class-II CMV05_12465 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CMV05_12465 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_12490 PF01497 Periplasmic binding protein CMV05_12495 PF03458 UPF0126 domain CMV05_12500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_12500 PF03466 LysR substrate binding domain CMV05_12505 PF01925 Sulfite exporter TauE/SafE CMV05_12510 PF02142 MGS-like domain CMV05_12510 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CMV05_12510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CMV05_12515 PF00117 Glutamine amidotransferase class-I CMV05_12515 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CMV05_12525 PF00293 NUDIX domain CMV05_12530 PF01043 SecA preprotein cross-linking domain CMV05_12530 PF07517 SecA DEAD-like domain CMV05_12530 PF02810 SEC-C motif CMV05_12530 PF07516 SecA Wing and Scaffold domain CMV05_12540 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CMV05_12545 PF00091 Tubulin/FtsZ family, GTPase domain CMV05_12545 PF12327 FtsZ family, C-terminal domain CMV05_12550 PF02491 SHS2 domain inserted in FTSA CMV05_12555 PF08478 POTRA domain, FtsQ-type CMV05_12555 PF03799 Cell division protein FtsQ CMV05_12560 PF08245 Mur ligase middle domain CMV05_12560 PF02875 Mur ligase family, glutamate ligase domain CMV05_12560 PF01225 Mur ligase family, catalytic domain CMV05_12565 PF03033 Glycosyltransferase family 28 N-terminal domain CMV05_12565 PF04101 Glycosyltransferase family 28 C-terminal domain CMV05_12570 PF01098 Cell cycle protein CMV05_12575 PF08245 Mur ligase middle domain CMV05_12575 PF02875 Mur ligase family, glutamate ligase domain CMV05_12580 PF00953 Glycosyl transferase family 4 CMV05_12580 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CMV05_12585 PF02875 Mur ligase family, glutamate ligase domain CMV05_12585 PF01225 Mur ligase family, catalytic domain CMV05_12585 PF08245 Mur ligase middle domain CMV05_12590 PF08245 Mur ligase middle domain CMV05_12590 PF02875 Mur ligase family, glutamate ligase domain CMV05_12590 PF01225 Mur ligase family, catalytic domain CMV05_12595 PF03717 Penicillin-binding Protein dimerisation domain CMV05_12595 PF00905 Penicillin binding protein transpeptidase domain CMV05_12600 PF04999 Cell division protein FtsL CMV05_12605 PF01795 MraW methylase family CMV05_12615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CMV05_12620 PF04348 LppC putative lipoprotein CMV05_12625 PF02021 Uncharacterised protein family UPF0102 CMV05_12630 PF13580 SIS domain CMV05_12635 PF04972 BON domain CMV05_12640 PF04386 Stringent starvation protein B CMV05_12645 PF00043 Glutathione S-transferase, C-terminal domain CMV05_12645 PF02798 Glutathione S-transferase, N-terminal domain CMV05_12650 PF02167 Cytochrome C1 family CMV05_12655 PF00033 Cytochrome b/b6/petB CMV05_12655 PF00032 Cytochrome b(C-terminal)/b6/petD CMV05_12660 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CMV05_12660 PF00355 Rieske [2Fe-2S] domain CMV05_12665 PF00380 Ribosomal protein S9/S16 CMV05_12670 PF00572 Ribosomal protein L13 CMV05_12680 PF03969 AFG1-like ATPase CMV05_12685 PF06295 Protein of unknown function (DUF1043) CMV05_12690 PF00595 PDZ domain CMV05_12695 PF13180 PDZ domain CMV05_12700 PF00521 DNA gyrase/topoisomerase IV, subunit A CMV05_12700 PF03989 DNA gyrase C-terminal domain, beta-propeller CMV05_12705 PF01751 Toprim domain CMV05_12705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_12705 PF00986 DNA gyrase B subunit, carboxyl terminus CMV05_12705 PF00204 DNA gyrase B CMV05_12710 PF05728 Uncharacterised protein family (UPF0227) CMV05_12715 PF00149 Calcineurin-like phosphoesterase CMV05_12720 PF06853 Protein of unknown function (DUF1249) CMV05_12725 PF00293 NUDIX domain CMV05_12730 PF02321 Outer membrane efflux protein CMV05_12735 PF01609 Transposase DDE domain CMV05_12735 PF13006 Insertion element 4 transposase N-terminal CMV05_12740 PF01467 Cytidylyltransferase-like CMV05_12740 PF00294 pfkB family carbohydrate kinase CMV05_12745 PF08335 GlnD PII-uridylyltransferase CMV05_12745 PF03710 Glutamate-ammonia ligase adenylyltransferase CMV05_12750 PF00672 HAMP domain CMV05_12750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_12760 PF01928 CYTH domain CMV05_12765 PF01865 Protein of unknown function DUF47 CMV05_12770 PF01384 Phosphate transporter family CMV05_12775 PF08239 Bacterial SH3 domain CMV05_12785 PF01471 Putative peptidoglycan binding domain CMV05_12785 PF13401 AAA domain CMV05_12790 PF01743 Poly A polymerase head domain CMV05_12790 PF01966 HD domain CMV05_12790 PF12627 Probable RNA and SrmB- binding site of polymerase A CMV05_12795 PF03952 Enolase, N-terminal domain CMV05_12795 PF00113 Enolase, C-terminal TIM barrel domain CMV05_12800 PF06418 CTP synthase N-terminus CMV05_12800 PF00117 Glutamine amidotransferase class-I CMV05_12805 PF03819 MazG nucleotide pyrophosphohydrolase domain CMV05_12810 PF02824 TGS domain CMV05_12810 PF04607 Region found in RelA / SpoT proteins CMV05_12810 PF13291 ACT domain CMV05_12815 PF01938 TRAM domain CMV05_12815 PF05958 tRNA (Uracil-5-)-methyltransferase CMV05_12820 PF00512 His Kinase A (phospho-acceptor) domain CMV05_12820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CMV05_12820 PF01627 Hpt domain CMV05_12820 PF00072 Response regulator receiver domain CMV05_12820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_12820 PF00672 HAMP domain CMV05_12825 PF01648 4'-phosphopantetheinyl transferase superfamily CMV05_12830 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CMV05_12840 PF07650 KH domain CMV05_12840 PF01926 50S ribosome-binding GTPase CMV05_12850 PF10502 Signal peptidase, peptidase S26 CMV05_12855 PF06421 GTP-binding protein LepA C-terminus CMV05_12855 PF00679 Elongation factor G C-terminus CMV05_12855 PF03144 Elongation factor Tu domain 2 CMV05_12855 PF00009 Elongation factor Tu GTP binding domain CMV05_12865 PF03888 MucB/RseB N-terminal domain CMV05_12865 PF17188 MucB/RseB C-terminal domain CMV05_12870 PF03872 Anti sigma-E protein RseA, N-terminal domain CMV05_12870 PF03873 Anti sigma-E protein RseA, C-terminal domain CMV05_12875 PF08281 Sigma-70, region 4 CMV05_12875 PF04542 Sigma-70 region 2 CMV05_12880 PF00890 FAD binding domain CMV05_12880 PF02910 Fumarate reductase flavoprotein C-term CMV05_12890 PF03937 Flavinator of succinate dehydrogenase CMV05_12910 PF02281 Transposase Tn5 dimerisation domain CMV05_12910 PF01609 Transposase DDE domain CMV05_12910 PF14706 Transposase DNA-binding CMV05_12915 PF01494 FAD binding domain CMV05_12920 PF01494 FAD binding domain CMV05_12930 PF05164 Cell division protein ZapA CMV05_12940 PF01812 5-formyltetrahydrofolate cyclo-ligase family CMV05_12945 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CMV05_12950 PF01842 ACT domain CMV05_12950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CMV05_12950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CMV05_12955 PF10369 Small subunit of acetolactate synthase CMV05_12960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CMV05_12960 PF00205 Thiamine pyrophosphate enzyme, central domain CMV05_12960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CMV05_12965 PF00501 AMP-binding enzyme CMV05_12970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_12970 PF03466 LysR substrate binding domain CMV05_12985 PF01569 PAP2 superfamily CMV05_12990 PF08502 LeuA allosteric (dimerisation) domain CMV05_12990 PF00682 HMGL-like CMV05_12995 PF00180 Isocitrate/isopropylmalate dehydrogenase CMV05_13000 PF00330 Aconitase family (aconitate hydratase) CMV05_13005 PF00694 Aconitase C-terminal domain CMV05_13070 PF01609 Transposase DDE domain CMV05_13070 PF13808 DDE_Tnp_1-associated CMV05_13090 PF00589 Phage integrase family CMV05_13090 PF02899 Phage integrase, N-terminal SAM-like domain CMV05_13105 PF01609 Transposase DDE domain CMV05_13105 PF02281 Transposase Tn5 dimerisation domain CMV05_13105 PF14706 Transposase DNA-binding CMV05_13110 PF01609 Transposase DDE domain CMV05_13110 PF13006 Insertion element 4 transposase N-terminal CMV05_13115 PF03739 Lipopolysaccharide export system permease LptF/LptG CMV05_13120 PF03739 Lipopolysaccharide export system permease LptF/LptG CMV05_13125 PF02789 Cytosol aminopeptidase family, N-terminal domain CMV05_13125 PF00883 Cytosol aminopeptidase family, catalytic domain CMV05_13130 PF04364 DNA polymerase III chi subunit, HolC CMV05_13135 PF10458 Valyl tRNA synthetase tRNA binding arm CMV05_13135 PF00133 tRNA synthetases class I (I, L, M and V) CMV05_13135 PF08264 Anticodon-binding domain of tRNA CMV05_13140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CMV05_13140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CMV05_13145 PF00849 RNA pseudouridylate synthase CMV05_13155 PF12137 RNA polymerase recycling family C-terminal CMV05_13155 PF00271 Helicase conserved C-terminal domain CMV05_13155 PF18339 RapA N-terminal Tudor like domain 1 CMV05_13155 PF00176 SNF2 family N-terminal domain CMV05_13155 PF18337 RapA N-terminal Tudor like domain CMV05_13165 PF02562 PhoH-like protein CMV05_13165 PF13638 PIN domain CMV05_13170 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CMV05_13170 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CMV05_13175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CMV05_13175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CMV05_13180 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CMV05_13180 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CMV05_13185 PF01042 Endoribonuclease L-PSP CMV05_13195 PF00072 Response regulator receiver domain CMV05_13195 PF13188 PAS domain CMV05_13195 PF00512 His Kinase A (phospho-acceptor) domain CMV05_13195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_13195 PF08448 PAS fold CMV05_13200 PF01553 Acyltransferase CMV05_13205 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CMV05_13210 PF01722 BolA-like protein CMV05_13220 PF05494 MlaC protein CMV05_13225 PF02470 MlaD protein CMV05_13230 PF02405 Permease MlaE CMV05_13235 PF00005 ABC transporter CMV05_13240 PF01699 Sodium/calcium exchanger protein CMV05_13245 PF01380 SIS domain CMV05_13245 PF00571 CBS domain CMV05_13260 PF03968 OstA-like protein CMV05_13265 PF12399 Branched-chain amino acid ATP-binding cassette transporter CMV05_13265 PF00005 ABC transporter CMV05_13270 PF04963 Sigma-54 factor, core binding domain CMV05_13270 PF04552 Sigma-54, DNA binding domain CMV05_13270 PF00309 Sigma-54 factor, Activator interacting domain (AID) CMV05_13275 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CMV05_13280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMV05_13285 PF03668 P-loop ATPase protein family CMV05_13290 PF00381 PTS HPr component phosphorylation site CMV05_13295 PF01769 Divalent cation transporter CMV05_13295 PF03448 MgtE intracellular N domain CMV05_13295 PF00571 CBS domain CMV05_13300 PF01523 Putative modulator of DNA gyrase CMV05_13305 PF04751 Protein of unknown function (DUF615) CMV05_13310 PF00005 ABC transporter CMV05_13315 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_13325 PF02441 Flavoprotein CMV05_13330 PF02875 Mur ligase family, glutamate ligase domain CMV05_13330 PF01225 Mur ligase family, catalytic domain CMV05_13330 PF08245 Mur ligase middle domain CMV05_13335 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CMV05_13340 PF00719 Inorganic pyrophosphatase CMV05_13350 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CMV05_13355 PF04357 TamB, inner membrane protein subunit of TAM complex CMV05_13360 PF17243 POTRA domain TamA domain 1 CMV05_13360 PF01103 Surface antigen CMV05_13360 PF07244 Surface antigen variable number repeat CMV05_13370 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_13370 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_13370 PF01610 Transposase CMV05_13375 PF13358 DDE superfamily endonuclease CMV05_13385 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CMV05_13400 PF00005 ABC transporter CMV05_13415 PF13358 DDE superfamily endonuclease CMV05_13430 PF00009 Elongation factor Tu GTP binding domain CMV05_13435 PF01507 Phosphoadenosine phosphosulfate reductase family CMV05_13440 PF10414 Sirohaem synthase dimerisation region CMV05_13440 PF14824 Sirohaem biosynthesis protein central CMV05_13440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CMV05_13445 PF02872 5'-nucleotidase, C-terminal domain CMV05_13445 PF00149 Calcineurin-like phosphoesterase CMV05_13485 PF03880 DbpA RNA binding domain CMV05_13485 PF00270 DEAD/DEAH box helicase CMV05_13485 PF00271 Helicase conserved C-terminal domain CMV05_13490 PF13673 Acetyltransferase (GNAT) domain CMV05_13495 PF08525 Opacity-associated protein A N-terminal motif CMV05_13495 PF04225 Opacity-associated protein A LysM-like domain CMV05_13500 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CMV05_13500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CMV05_13505 PF01196 Ribosomal protein L17 CMV05_13515 PF00163 Ribosomal protein S4/S9 N-terminal domain CMV05_13515 PF01479 S4 domain CMV05_13520 PF00411 Ribosomal protein S11 CMV05_13525 PF00416 Ribosomal protein S13/S18 CMV05_13530 PF00444 Ribosomal protein L36 CMV05_13535 PF00344 SecY translocase CMV05_13540 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CMV05_13545 PF00327 Ribosomal protein L30p/L7e CMV05_13555 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CMV05_13560 PF00347 Ribosomal protein L6 CMV05_13565 PF00410 Ribosomal protein S8 CMV05_13570 PF00253 Ribosomal protein S14p/S29e CMV05_13575 PF00673 ribosomal L5P family C-terminus CMV05_13575 PF00281 Ribosomal protein L5 CMV05_13585 PF00238 Ribosomal protein L14p/L23e CMV05_13590 PF00366 Ribosomal protein S17 CMV05_13595 PF00831 Ribosomal L29 protein CMV05_13600 PF00252 Ribosomal protein L16p/L10e CMV05_13605 PF07650 KH domain CMV05_13605 PF00189 Ribosomal protein S3, C-terminal domain CMV05_13610 PF00237 Ribosomal protein L22p/L17e CMV05_13615 PF00203 Ribosomal protein S19 CMV05_13620 PF03947 Ribosomal Proteins L2, C-terminal domain CMV05_13620 PF00181 Ribosomal Proteins L2, RNA binding domain CMV05_13625 PF00276 Ribosomal protein L23 CMV05_13640 PF00338 Ribosomal protein S10p/S20e CMV05_13645 PF00588 SpoU rRNA Methylase family CMV05_13645 PF08032 RNA 2'-O ribose methyltransferase substrate binding CMV05_13650 PF08461 Ribonuclease R winged-helix domain CMV05_13650 PF08206 Ribonuclease B OB domain CMV05_13650 PF00773 RNB domain CMV05_13650 PF00575 S1 RNA binding domain CMV05_13650 PF17876 Cold shock domain CMV05_13655 PF08238 Sel1 repeat CMV05_13665 PF00709 Adenylosuccinate synthetase CMV05_13670 PF01112 Asparaginase CMV05_13675 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CMV05_13680 PF09526 Probable metal-binding protein (DUF2387) CMV05_13685 PF02254 TrkA-N domain CMV05_13685 PF00999 Sodium/hydrogen exchanger family CMV05_13690 PF02525 Flavodoxin-like fold CMV05_13695 PF12848 ABC transporter CMV05_13695 PF00005 ABC transporter CMV05_13705 PF00561 alpha/beta hydrolase fold CMV05_13710 PF06794 Uncharacterised protein family (UPF0270) CMV05_13715 PF00485 Phosphoribulokinase / Uridine kinase family CMV05_13720 PF00027 Cyclic nucleotide-binding domain CMV05_13720 PF13545 Crp-like helix-turn-helix domain CMV05_13735 PF04958 Arginine N-succinyltransferase beta subunit CMV05_13740 PF00202 Aminotransferase class-III CMV05_13745 PF00117 Glutamine amidotransferase class-I CMV05_13755 PF01609 Transposase DDE domain CMV05_13755 PF13808 DDE_Tnp_1-associated CMV05_13765 PF01494 FAD binding domain CMV05_13775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_13775 PF03466 LysR substrate binding domain CMV05_13790 PF00579 tRNA synthetases class I (W and Y) CMV05_13795 PF13419 Haloacid dehalogenase-like hydrolase CMV05_13800 PF00834 Ribulose-phosphate 3 epimerase family CMV05_13805 PF02086 D12 class N6 adenine-specific DNA methyltransferase CMV05_13820 PF01202 Shikimate kinase CMV05_13825 PF11741 AMIN domain CMV05_13825 PF07660 Secretin and TonB N terminus short domain CMV05_13825 PF03958 Bacterial type II/III secretion system short domain CMV05_13825 PF00263 Bacterial type II and III secretion system protein CMV05_13850 PF00905 Penicillin binding protein transpeptidase domain CMV05_13850 PF00912 Transglycosylase CMV05_13850 PF17092 Penicillin-binding protein OB-like domain CMV05_13855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_13855 PF03466 LysR substrate binding domain CMV05_13860 PF08534 Redoxin CMV05_13860 PF00462 Glutaredoxin CMV05_13865 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_13865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMV05_13875 PF14698 Argininosuccinate lyase C-terminal CMV05_13875 PF00583 Acetyltransferase (GNAT) family CMV05_13875 PF00206 Lyase CMV05_13880 PF00764 Arginosuccinate synthase CMV05_13885 PF00696 Amino acid kinase family CMV05_13890 PF01118 Semialdehyde dehydrogenase, NAD binding domain CMV05_13890 PF02774 Semialdehyde dehydrogenase, dimerisation domain CMV05_13910 PF06426 Serine acetyltransferase, N-terminal CMV05_13910 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_13915 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CMV05_13915 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CMV05_13920 PF02556 Preprotein translocase subunit SecB CMV05_13925 PF00581 Rhodanese-like domain CMV05_13930 PF00152 tRNA synthetases class II (D, K and N) CMV05_13935 PF02910 Fumarate reductase flavoprotein C-term CMV05_13935 PF00890 FAD binding domain CMV05_13940 PF13183 4Fe-4S dicluster domain CMV05_13940 PF13085 2Fe-2S iron-sulfur cluster binding domain CMV05_13945 PF02300 Fumarate reductase subunit C CMV05_13950 PF02313 Fumarate reductase subunit D CMV05_13955 PF01132 Elongation factor P (EF-P) OB domain CMV05_13955 PF08207 Elongation factor P (EF-P) KOW-like domain CMV05_13955 PF09285 Elongation factor P, C-terminal CMV05_13960 PF04055 Radical SAM superfamily CMV05_13965 PF02308 MgtC family CMV05_13975 PF00118 TCP-1/cpn60 chaperonin family CMV05_13980 PF00166 Chaperonin 10 Kd subunit CMV05_14005 PF00121 Triosephosphate isomerase CMV05_14010 PF01554 MatE CMV05_14015 PF03737 Aldolase/RraA CMV05_14020 PF01040 UbiA prenyltransferase family CMV05_14025 PF07724 AAA domain (Cdc48 subfamily) CMV05_14025 PF00004 ATPase family associated with various cellular activities (AAA) CMV05_14025 PF10431 C-terminal, D2-small domain, of ClpB protein CMV05_14030 PF00227 Proteasome subunit CMV05_14040 PF00356 Bacterial regulatory proteins, lacI family CMV05_14045 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CMV05_14045 PF18074 Primosomal protein N C-terminal domain CMV05_14045 PF17764 3′ DNA-binding domain (3′BD) CMV05_14045 PF00271 Helicase conserved C-terminal domain CMV05_14045 PF00270 DEAD/DEAH box helicase CMV05_14050 PF01197 Ribosomal protein L31 CMV05_14055 PF13358 DDE superfamily endonuclease CMV05_14060 PF03949 Malic enzyme, NAD binding domain CMV05_14060 PF00390 Malic enzyme, N-terminal domain CMV05_14065 PF01340 Met Apo-repressor, MetJ CMV05_14070 PF01053 Cys/Met metabolism PLP-dependent enzyme CMV05_14075 PF00696 Amino acid kinase family CMV05_14075 PF00742 Homoserine dehydrogenase CMV05_14075 PF03447 Homoserine dehydrogenase, NAD binding domain CMV05_14080 PF02219 Methylenetetrahydrofolate reductase CMV05_14090 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CMV05_14095 PF01609 Transposase DDE domain CMV05_14095 PF13006 Insertion element 4 transposase N-terminal CMV05_14100 PF00365 Phosphofructokinase CMV05_14105 PF01545 Cation efflux family CMV05_14105 PF16916 Dimerisation domain of Zinc Transporter CMV05_14130 PF16527 Two-component sensor protein CpxA, periplasmic domain CMV05_14130 PF00672 HAMP domain CMV05_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_14130 PF00512 His Kinase A (phospho-acceptor) domain CMV05_14135 PF00588 SpoU rRNA Methylase family CMV05_14140 PF00313 'Cold-shock' DNA-binding domain CMV05_14145 PF04186 FxsA cytoplasmic membrane protein CMV05_14150 PF10415 Fumarase C C-terminus CMV05_14150 PF00206 Lyase CMV05_14155 PF03605 Anaerobic c4-dicarboxylate membrane transporter CMV05_14160 PF03606 C4-dicarboxylate anaerobic carrier CMV05_14170 PF00696 Amino acid kinase family CMV05_14175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CMV05_14175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CMV05_14185 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CMV05_14185 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CMV05_14190 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CMV05_14190 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CMV05_14195 PF02863 Arginine repressor, C-terminal domain CMV05_14195 PF01316 Arginine repressor, DNA binding domain CMV05_14200 PF02683 Cytochrome C biogenesis protein transmembrane region CMV05_14200 PF11412 Disulphide bond corrector protein DsbC CMV05_14205 PF00072 Response regulator receiver domain CMV05_14205 PF00196 Bacterial regulatory proteins, luxR family CMV05_14210 PF02080 TrkA-C domain CMV05_14210 PF00999 Sodium/hydrogen exchanger family CMV05_14210 PF03471 Transporter associated domain CMV05_14220 PF00474 Sodium:solute symporter family CMV05_14225 PF01627 Hpt domain CMV05_14225 PF00512 His Kinase A (phospho-acceptor) domain CMV05_14225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_14225 PF00072 Response regulator receiver domain CMV05_14225 PF00672 HAMP domain CMV05_14230 PF12832 MFS_1 like family CMV05_14245 PF16177 Acetyl-coenzyme A synthetase N-terminus CMV05_14245 PF00501 AMP-binding enzyme CMV05_14245 PF13193 AMP-binding enzyme C-terminal domain CMV05_14250 PF01220 Dehydroquinase class II CMV05_14255 PF00364 Biotin-requiring enzyme CMV05_14260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CMV05_14260 PF02785 Biotin carboxylase C-terminal domain CMV05_14260 PF00289 Biotin carboxylase, N-terminal domain CMV05_14270 PF01207 Dihydrouridine synthase (Dus) CMV05_14275 PF02954 Bacterial regulatory protein, Fis family CMV05_14280 PF17200 Single Cache domain 2 CMV05_14280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_14280 PF00672 HAMP domain CMV05_14285 PF13411 MerR HTH family regulatory protein CMV05_14290 PF01808 AICARFT/IMPCHase bienzyme CMV05_14290 PF02142 MGS-like domain CMV05_14295 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CMV05_14295 PF02843 Phosphoribosylglycinamide synthetase, C domain CMV05_14295 PF02844 Phosphoribosylglycinamide synthetase, N domain CMV05_14305 PF00216 Bacterial DNA-binding protein CMV05_14310 PF01595 Cyclin M transmembrane N-terminal domain CMV05_14310 PF00571 CBS domain CMV05_14335 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CMV05_14340 PF06251 Capsule biosynthesis GfcC CMV05_14345 PF06082 Exopolysaccharide biosynthesis protein YbjH CMV05_14355 PF04222 Protein of unknown function (DUF416) CMV05_14360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CMV05_14365 PF00924 Mechanosensitive ion channel CMV05_14370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_14370 PF02743 Cache domain CMV05_14370 PF00672 HAMP domain CMV05_14385 PF03050 Transposase IS66 family CMV05_14385 PF13007 Transposase C of IS166 homeodomain CMV05_14385 PF13005 zinc-finger binding domain of transposase IS66 CMV05_14385 PF13817 IS66 C-terminal element CMV05_14405 PF02719 Polysaccharide biosynthesis protein CMV05_14410 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CMV05_14420 PF02397 Bacterial sugar transferase CMV05_14435 PF02350 UDP-N-acetylglucosamine 2-epimerase CMV05_14455 PF00977 Histidine biosynthesis protein CMV05_14460 PF00117 Glutamine amidotransferase class-I CMV05_14485 PF02911 Formyl transferase, C-terminal domain CMV05_14485 PF00551 Formyl transferase CMV05_14490 PF00733 Asparagine synthase CMV05_14490 PF13537 Glutamine amidotransferase domain CMV05_14500 PF01757 Acyltransferase family CMV05_14505 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CMV05_14510 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_14515 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CMV05_14515 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CMV05_14515 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CMV05_14520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CMV05_14520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CMV05_14525 PF13808 DDE_Tnp_1-associated CMV05_14525 PF01609 Transposase DDE domain CMV05_14535 PF01370 NAD dependent epimerase/dehydratase family CMV05_14550 PF04932 O-Antigen ligase CMV05_14560 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CMV05_14570 PF04488 Glycosyltransferase sugar-binding region containing DXD motif CMV05_14575 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CMV05_14600 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_14605 PF03050 Transposase IS66 family CMV05_14605 PF13817 IS66 C-terminal element CMV05_14605 PF13007 Transposase C of IS166 homeodomain CMV05_14605 PF13005 zinc-finger binding domain of transposase IS66 CMV05_14650 PF00075 RNase H CMV05_14665 PF01320 Colicin immunity protein / pyocin immunity protein CMV05_14700 PF04002 RadC-like JAB domain CMV05_14735 PF03050 Transposase IS66 family CMV05_14735 PF13007 Transposase C of IS166 homeodomain CMV05_14735 PF13005 zinc-finger binding domain of transposase IS66 CMV05_14735 PF13817 IS66 C-terminal element CMV05_14750 PF08340 Domain of unknown function (DUF1732) CMV05_14750 PF03755 YicC-like family, N-terminal region CMV05_14755 PF01138 3' exoribonuclease family, domain 1 CMV05_14755 PF03725 3' exoribonuclease family, domain 2 CMV05_14765 PF03279 Bacterial lipid A biosynthesis acyltransferase CMV05_14770 PF03279 Bacterial lipid A biosynthesis acyltransferase CMV05_14775 PF00440 Bacterial regulatory proteins, tetR family CMV05_14780 PF04127 DNA / pantothenate metabolism flavoprotein CMV05_14780 PF02441 Flavoprotein CMV05_14785 PF04002 RadC-like JAB domain CMV05_14795 PF00471 Ribosomal protein L33 CMV05_14805 PF01610 Transposase CMV05_14805 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_14805 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_14810 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CMV05_14810 PF06827 Zinc finger found in FPG and IleRS CMV05_14810 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CMV05_14815 PF01467 Cytidylyltransferase-like CMV05_14820 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CMV05_14825 PF00535 Glycosyl transferase family 2 CMV05_14830 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CMV05_14840 PF01757 Acyltransferase family CMV05_14845 PF13808 DDE_Tnp_1-associated CMV05_14845 PF01609 Transposase DDE domain CMV05_14860 PF13005 zinc-finger binding domain of transposase IS66 CMV05_14860 PF13817 IS66 C-terminal element CMV05_14860 PF13007 Transposase C of IS166 homeodomain CMV05_14860 PF03050 Transposase IS66 family CMV05_14880 PF01609 Transposase DDE domain CMV05_14880 PF13006 Insertion element 4 transposase N-terminal CMV05_14905 PF00675 Insulinase (Peptidase family M16) CMV05_14905 PF05193 Peptidase M16 inactive domain CMV05_14910 PF03350 Uncharacterized protein family, UPF0114 CMV05_14915 PF01032 FecCD transport family CMV05_14920 PF01497 Periplasmic binding protein CMV05_14925 PF00005 ABC transporter CMV05_14930 PF00593 TonB dependent receptor CMV05_14930 PF07715 TonB-dependent Receptor Plug Domain CMV05_14935 PF00005 ABC transporter CMV05_14935 PF00664 ABC transporter transmembrane region CMV05_14940 PF02378 Phosphotransferase system, EIIC CMV05_14940 PF00367 phosphotransferase system, EIIB CMV05_14945 PF01380 SIS domain CMV05_14950 PF01418 Helix-turn-helix domain, rpiR family CMV05_14950 PF01380 SIS domain CMV05_14965 PF00570 HRDC domain CMV05_14965 PF16124 RecQ zinc-binding CMV05_14965 PF00271 Helicase conserved C-terminal domain CMV05_14965 PF00270 DEAD/DEAH box helicase CMV05_14965 PF09382 RQC domain CMV05_14985 PF01810 LysE type translocator CMV05_14990 PF00580 UvrD/REP helicase N-terminal domain CMV05_14990 PF13361 UvrD-like helicase C-terminal domain CMV05_14995 PF01432 Peptidase family M3 CMV05_15000 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CMV05_15005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CMV05_15005 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_15010 PF13358 DDE superfamily endonuclease CMV05_15045 PF00005 ABC transporter CMV05_15050 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_15050 PF01610 Transposase CMV05_15050 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_15055 PF01032 FecCD transport family CMV05_15060 PF01032 FecCD transport family CMV05_15065 PF01497 Periplasmic binding protein CMV05_15070 PF07715 TonB-dependent Receptor Plug Domain CMV05_15070 PF00593 TonB dependent receptor CMV05_15075 PF00005 ABC transporter CMV05_15080 PF00005 ABC transporter CMV05_15080 PF00664 ABC transporter transmembrane region CMV05_15100 PF02899 Phage integrase, N-terminal SAM-like domain CMV05_15100 PF00589 Phage integrase family CMV05_15125 PF13808 DDE_Tnp_1-associated CMV05_15125 PF01609 Transposase DDE domain CMV05_15135 PF13358 DDE superfamily endonuclease CMV05_15145 PF00072 Response regulator receiver domain CMV05_15160 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_15160 PF12911 N-terminal TM domain of oligopeptide transport permease C CMV05_15170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMV05_15175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMV05_15175 PF00005 ABC transporter CMV05_15205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CMV05_15210 PF00580 UvrD/REP helicase N-terminal domain CMV05_15210 PF13361 UvrD-like helicase C-terminal domain CMV05_15215 PF08359 YsiA-like protein, C-terminal region CMV05_15215 PF00440 Bacterial regulatory proteins, tetR family CMV05_15220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CMV05_15225 PF00873 AcrB/AcrD/AcrF family CMV05_15230 PF04380 Membrane fusogenic activity CMV05_15235 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CMV05_15235 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CMV05_15240 PF03466 LysR substrate binding domain CMV05_15240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_15245 PF13006 Insertion element 4 transposase N-terminal CMV05_15245 PF01609 Transposase DDE domain CMV05_15250 PF04055 Radical SAM superfamily CMV05_15250 PF06969 HemN C-terminal domain CMV05_15255 PF10675 Protein of unknown function (DUF2489) CMV05_15260 PF04220 Der GTPase activator (YihI) CMV05_15270 PF00034 Cytochrome c CMV05_15275 PF01926 50S ribosome-binding GTPase CMV05_15280 PF00476 DNA polymerase family A CMV05_15280 PF01367 5'-3' exonuclease, C-terminal SAM fold CMV05_15280 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CMV05_15280 PF01612 3'-5' exonuclease CMV05_15285 PF00490 Delta-aminolevulinic acid dehydratase CMV05_15290 PF01026 TatD related DNase CMV05_15300 PF00902 Sec-independent protein translocase protein (TatC) CMV05_15305 PF02416 mttA/Hcf106 family CMV05_15310 PF02416 mttA/Hcf106 family CMV05_15315 PF03109 ABC1 family CMV05_15320 PF02036 SCP-2 sterol transfer family CMV05_15325 PF01209 ubiE/COQ5 methyltransferase family CMV05_15330 PF02646 RmuC family CMV05_15340 PF12833 Helix-turn-helix domain CMV05_15340 PF02311 AraC-like ligand binding domain CMV05_15350 PF11762 L-arabinose isomerase C-terminal domain CMV05_15350 PF02610 L-arabinose isomerase CMV05_15355 PF00596 Class II Aldolase and Adducin N-terminal domain CMV05_15360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CMV05_15360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CMV05_15370 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CMV05_15375 PF00005 ABC transporter CMV05_15380 PF02653 Branched-chain amino acid transport system / permease component CMV05_15385 PF00580 UvrD/REP helicase N-terminal domain CMV05_15385 PF13361 UvrD-like helicase C-terminal domain CMV05_15405 PF13358 DDE superfamily endonuclease CMV05_15415 PF00872 Transposase, Mutator family CMV05_15425 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_15425 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_15425 PF01610 Transposase CMV05_15440 PF10625 Universal stress protein B (UspB) CMV05_15445 PF00210 Ferritin-like domain CMV05_15450 PF00582 Universal stress protein family CMV05_15455 PF00892 EamA-like transporter family CMV05_15465 PF04445 Putative SAM-dependent methyltransferase CMV05_15470 PF01037 Lrp/AsnC ligand binding domain CMV05_15480 PF07690 Major Facilitator Superfamily CMV05_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_15485 PF03466 LysR substrate binding domain CMV05_15490 PF00557 Metallopeptidase family M24 CMV05_15490 PF01321 Creatinase/Prolidase N-terminal domain CMV05_15490 PF00557 Metallopeptidase family M24 CMV05_15490 PF01321 Creatinase/Prolidase N-terminal domain CMV05_15495 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_15495 PF01610 Transposase CMV05_15495 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_15500 PF06968 Biotin and Thiamin Synthesis associated domain CMV05_15500 PF04055 Radical SAM superfamily CMV05_15505 PF05690 Thiazole biosynthesis protein ThiG CMV05_15510 PF02597 ThiS family CMV05_15515 PF00899 ThiF family CMV05_15520 PF02581 Thiamine monophosphate synthase CMV05_15525 PF01964 Radical SAM ThiC family CMV05_15525 PF13667 ThiC-associated domain CMV05_15530 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CMV05_15580 PF12724 Flavodoxin domain CMV05_15585 PF02386 Cation transport protein CMV05_15590 PF01205 Uncharacterized protein family UPF0029 CMV05_15590 PF09186 Domain of unknown function (DUF1949) CMV05_15595 PF00378 Enoyl-CoA hydratase/isomerase CMV05_15595 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CMV05_15595 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CMV05_15600 PF02803 Thiolase, C-terminal domain CMV05_15600 PF00108 Thiolase, N-terminal domain CMV05_15605 PF03466 LysR substrate binding domain CMV05_15605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_15610 PF07690 Major Facilitator Superfamily CMV05_15615 PF14602 Hexapeptide repeat of succinyl-transferase CMV05_15615 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_15615 PF12804 MobA-like NTP transferase domain CMV05_15620 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CMV05_15620 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CMV05_15625 PF02874 ATP synthase alpha/beta family, beta-barrel domain CMV05_15625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CMV05_15630 PF00231 ATP synthase CMV05_15635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CMV05_15635 PF00306 ATP synthase alpha/beta chain, C terminal domain CMV05_15635 PF02874 ATP synthase alpha/beta family, beta-barrel domain CMV05_15640 PF00213 ATP synthase delta (OSCP) subunit CMV05_15645 PF00430 ATP synthase B/B' CF(0) CMV05_15650 PF00137 ATP synthase subunit C CMV05_15655 PF00119 ATP synthase A chain CMV05_15660 PF03899 ATP synthase I chain CMV05_15665 PF02195 ParB-like nuclease domain CMV05_15665 PF17762 HTH domain found in ParB protein CMV05_15670 PF13614 AAA domain CMV05_15675 PF02527 rRNA small subunit methyltransferase G CMV05_15680 PF01134 Glucose inhibited division protein A CMV05_15680 PF13932 GidA associated domain CMV05_15705 PF01709 Transcriptional regulator CMV05_15710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CMV05_15710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CMV05_15715 PF03222 Tryptophan/tyrosine permease family CMV05_15745 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CMV05_15745 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CMV05_15750 PF06029 AlkA N-terminal domain CMV05_15750 PF00730 HhH-GPD superfamily base excision DNA repair protein CMV05_15755 PF03466 LysR substrate binding domain CMV05_15755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_15770 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CMV05_15780 PF01551 Peptidase family M23 CMV05_15780 PF04225 Opacity-associated protein A LysM-like domain CMV05_15785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CMV05_15785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMV05_15785 PF02378 Phosphotransferase system, EIIC CMV05_15790 PF08125 Mannitol dehydrogenase C-terminal domain CMV05_15790 PF01232 Mannitol dehydrogenase Rossmann domain CMV05_15795 PF05068 Mannitol repressor CMV05_15805 PF03600 Citrate transporter CMV05_15810 PF00375 Sodium:dicarboxylate symporter family CMV05_15815 PF07681 DoxX CMV05_15820 PF13737 Transposase DDE domain CMV05_15835 PF00529 HlyD membrane-fusion protein of T1SS CMV05_15835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CMV05_15840 PF01047 MarR family CMV05_15845 PF04393 Protein of unknown function (DUF535) CMV05_15855 PF00563 EAL domain CMV05_15855 PF12792 CSS motif domain associated with EAL CMV05_15865 PF00581 Rhodanese-like domain CMV05_15875 PF00005 ABC transporter CMV05_15890 PF00005 ABC transporter CMV05_15890 PF08402 TOBE domain CMV05_15900 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_15915 PF07702 UTRA domain CMV05_15915 PF00392 Bacterial regulatory proteins, gntR family CMV05_15920 PF00270 DEAD/DEAH box helicase CMV05_15920 PF00271 Helicase conserved C-terminal domain CMV05_15925 PF01042 Endoribonuclease L-PSP CMV05_15930 PF13419 Haloacid dehalogenase-like hydrolase CMV05_15940 PF04055 Radical SAM superfamily CMV05_15945 PF11230 Protein of unknown function (DUF3029) CMV05_15955 PF00107 Zinc-binding dehydrogenase CMV05_15955 PF16884 N-terminal domain of oxidoreductase CMV05_15960 PF00440 Bacterial regulatory proteins, tetR family CMV05_15960 PF16925 Tetracyclin repressor-like, C-terminal domain CMV05_15975 PF00486 Transcriptional regulatory protein, C terminal CMV05_15975 PF00072 Response regulator receiver domain CMV05_15985 PF00849 RNA pseudouridylate synthase CMV05_15990 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_15990 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_15990 PF01610 Transposase CMV05_16035 PF10431 C-terminal, D2-small domain, of ClpB protein CMV05_16035 PF17871 AAA lid domain CMV05_16035 PF07724 AAA domain (Cdc48 subfamily) CMV05_16035 PF00004 ATPase family associated with various cellular activities (AAA) CMV05_16065 PF16671 Actin cross-linking domain CMV05_16065 PF04717 Type VI secretion system, phage-baseplate injector CMV05_16105 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_16105 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_16105 PF01610 Transposase CMV05_16135 PF00939 Sodium:sulfate symporter transmembrane region CMV05_16140 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CMV05_16145 PF08329 Chitinase A, N-terminal domain CMV05_16145 PF00704 Glycosyl hydrolases family 18 CMV05_16150 PF00392 Bacterial regulatory proteins, gntR family CMV05_16150 PF07702 UTRA domain CMV05_16155 PF00005 ABC transporter CMV05_16165 PF13006 Insertion element 4 transposase N-terminal CMV05_16165 PF01609 Transposase DDE domain CMV05_16180 PF13358 DDE superfamily endonuclease CMV05_16185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_16185 PF00672 HAMP domain CMV05_16205 PF01554 MatE CMV05_16210 PF02264 LamB porin CMV05_16215 PF00356 Bacterial regulatory proteins, lacI family CMV05_16225 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_16230 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_16235 PF00005 ABC transporter CMV05_16235 PF17912 MalK OB fold domain CMV05_16240 PF14310 Fibronectin type III-like domain CMV05_16240 PF01915 Glycosyl hydrolase family 3 C-terminal domain CMV05_16240 PF00933 Glycosyl hydrolase family 3 N terminal domain CMV05_16245 PF00356 Bacterial regulatory proteins, lacI family CMV05_16250 PF13358 DDE superfamily endonuclease CMV05_16270 PF03372 Endonuclease/Exonuclease/phosphatase family CMV05_16280 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CMV05_16285 PF01545 Cation efflux family CMV05_16300 PF01161 Phosphatidylethanolamine-binding protein CMV05_16315 PF01070 FMN-dependent dehydrogenase CMV05_16320 PF02652 L-lactate permease CMV05_16325 PF03466 LysR substrate binding domain CMV05_16325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_16335 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_16355 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_16360 PF01610 Transposase CMV05_16360 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_16360 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_16365 PF04151 Bacterial pre-peptidase C-terminal domain CMV05_16365 PF08453 Peptidase family M9 N-terminal CMV05_16365 PF01752 Collagenase CMV05_16375 PF01497 Periplasmic binding protein CMV05_16380 PF01032 FecCD transport family CMV05_16385 PF01032 FecCD transport family CMV05_16390 PF00005 ABC transporter CMV05_16395 PF00871 Acetokinase family CMV05_16405 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_16410 PF02347 Glycine cleavage system P-protein CMV05_16420 PF00464 Serine hydroxymethyltransferase CMV05_16430 PF08669 Glycine cleavage T-protein C-terminal barrel domain CMV05_16430 PF01571 Aminomethyltransferase folate-binding domain CMV05_16435 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_16435 PF01610 Transposase CMV05_16435 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_16450 PF00675 Insulinase (Peptidase family M16) CMV05_16450 PF05193 Peptidase M16 inactive domain CMV05_16460 PF02705 K+ potassium transporter CMV05_16470 PF01610 Transposase CMV05_16470 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_16470 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_16475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CMV05_16475 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CMV05_16475 PF10371 Domain of unknown function CMV05_16475 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CMV05_16475 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CMV05_16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_16480 PF13493 Domain of unknown function (DUF4118) CMV05_16480 PF00512 His Kinase A (phospho-acceptor) domain CMV05_16480 PF02702 Osmosensitive K+ channel His kinase sensor domain CMV05_16485 PF00072 Response regulator receiver domain CMV05_16485 PF00486 Transcriptional regulatory protein, C terminal CMV05_16500 PF02378 Phosphotransferase system, EIIC CMV05_16500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CMV05_16505 PF00294 pfkB family carbohydrate kinase CMV05_16510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMV05_16510 PF00381 PTS HPr component phosphorylation site CMV05_16515 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CMV05_16515 PF00356 Bacterial regulatory proteins, lacI family CMV05_16535 PF00005 ABC transporter CMV05_16545 PF00872 Transposase, Mutator family CMV05_16560 PF02653 Branched-chain amino acid transport system / permease component CMV05_16565 PF02653 Branched-chain amino acid transport system / permease component CMV05_16570 PF00149 Calcineurin-like phosphoesterase CMV05_16570 PF12320 Type 5 capsule protein repressor C-terminal domain CMV05_16575 PF13476 AAA domain CMV05_16580 PF00072 Response regulator receiver domain CMV05_16580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_16585 PF00155 Aminotransferase class I and II CMV05_16595 PF00654 Voltage gated chloride channel CMV05_16600 PF02492 CobW/HypB/UreG, nucleotide-binding domain CMV05_16600 PF07683 Cobalamin synthesis protein cobW C-terminal domain CMV05_16610 PF00005 ABC transporter CMV05_16615 PF12704 MacB-like periplasmic core domain CMV05_16615 PF02687 FtsX-like permease family CMV05_16615 PF00005 ABC transporter CMV05_16620 PF12704 MacB-like periplasmic core domain CMV05_16620 PF02687 FtsX-like permease family CMV05_16620 PF00005 ABC transporter CMV05_16635 PF01926 50S ribosome-binding GTPase CMV05_16650 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_16650 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_16650 PF01610 Transposase CMV05_16660 PF13358 DDE superfamily endonuclease CMV05_16670 PF13358 DDE superfamily endonuclease CMV05_16675 PF01547 Bacterial extracellular solute-binding protein CMV05_16680 PF13358 DDE superfamily endonuclease CMV05_16685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_16685 PF03466 LysR substrate binding domain CMV05_16690 PF16657 Maltogenic Amylase, C-terminal domain CMV05_16690 PF00128 Alpha amylase, catalytic domain CMV05_16700 PF00375 Sodium:dicarboxylate symporter family CMV05_16710 PF02630 SCO1/SenC CMV05_16725 PF13358 DDE superfamily endonuclease CMV05_16730 PF03616 Sodium/glutamate symporter CMV05_16735 PF12945 Flagellar protein YcgR CMV05_16735 PF07238 PilZ domain CMV05_16755 PF01609 Transposase DDE domain CMV05_16755 PF13808 DDE_Tnp_1-associated CMV05_16765 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CMV05_16770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CMV05_16775 PF02566 OsmC-like protein CMV05_16780 PF12464 Maltose acetyltransferase CMV05_16780 PF14602 Hexapeptide repeat of succinyl-transferase CMV05_16785 PF00892 EamA-like transporter family CMV05_16795 PF03466 LysR substrate binding domain CMV05_16795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_16805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_16805 PF03466 LysR substrate binding domain CMV05_16810 PF00501 AMP-binding enzyme CMV05_16810 PF13193 AMP-binding enzyme C-terminal domain CMV05_16815 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CMV05_16820 PF01329 Pterin 4 alpha carbinolamine dehydratase CMV05_16830 PF01610 Transposase CMV05_16830 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_16830 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_16840 PF01554 MatE CMV05_16845 PF02311 AraC-like ligand binding domain CMV05_16845 PF12833 Helix-turn-helix domain CMV05_16850 PF11849 Domain of unknown function (DUF3369) CMV05_16860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_16860 PF00512 His Kinase A (phospho-acceptor) domain CMV05_16860 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMV05_16870 PF07690 Major Facilitator Superfamily CMV05_16875 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_16875 PF01610 Transposase CMV05_16875 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_16885 PF01226 Formate/nitrite transporter CMV05_16890 PF03466 LysR substrate binding domain CMV05_16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_16895 PF06496 Protein of unknown function (DUF1097) CMV05_16900 PF11398 Protein of unknown function (DUF2813) CMV05_16905 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_16905 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_16905 PF01610 Transposase CMV05_16910 PF07694 5TMR of 5TMR-LYT CMV05_16910 PF00990 Diguanylate cyclase, GGDEF domain CMV05_16925 PF00916 Sulfate permease family CMV05_16925 PF01740 STAS domain CMV05_16935 PF08525 Opacity-associated protein A N-terminal motif CMV05_16935 PF01551 Peptidase family M23 CMV05_16935 PF01476 LysM domain CMV05_16940 PF08448 PAS fold CMV05_16940 PF08447 PAS fold CMV05_16940 PF00990 Diguanylate cyclase, GGDEF domain CMV05_16940 PF00563 EAL domain CMV05_16945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_16945 PF03466 LysR substrate binding domain CMV05_16950 PF07690 Major Facilitator Superfamily CMV05_16965 PF00462 Glutaredoxin CMV05_16970 PF00892 EamA-like transporter family CMV05_16985 PF01557 Fumarylacetoacetate (FAA) hydrolase family CMV05_17005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CMV05_17005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CMV05_17005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CMV05_17005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CMV05_17010 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_17015 PF00497 Bacterial extracellular solute-binding proteins, family 3 CMV05_17020 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_17025 PF00005 ABC transporter CMV05_17030 PF00793 DAHP synthetase I family CMV05_17050 PF02678 Pirin CMV05_17050 PF05726 Pirin C-terminal cupin domain CMV05_17060 PF00563 EAL domain CMV05_17060 PF00990 Diguanylate cyclase, GGDEF domain CMV05_17065 PF03466 LysR substrate binding domain CMV05_17065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_17080 PF00990 Diguanylate cyclase, GGDEF domain CMV05_17080 PF00563 EAL domain CMV05_17080 PF03707 Bacterial signalling protein N terminal repeat CMV05_17095 PF00990 Diguanylate cyclase, GGDEF domain CMV05_17100 PF04237 YjbR CMV05_17105 PF01584 CheW-like domain CMV05_17105 PF00072 Response regulator receiver domain CMV05_17115 PF01609 Transposase DDE domain CMV05_17115 PF13006 Insertion element 4 transposase N-terminal CMV05_17125 PF03605 Anaerobic c4-dicarboxylate membrane transporter CMV05_17140 PF00072 Response regulator receiver domain CMV05_17140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_17140 PF00512 His Kinase A (phospho-acceptor) domain CMV05_17140 PF01627 Hpt domain CMV05_17140 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CMV05_17140 PF00672 HAMP domain CMV05_17145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_17145 PF00672 HAMP domain CMV05_17145 PF12729 Four helix bundle sensory module for signal transduction CMV05_17155 PF13520 Amino acid permease CMV05_17160 PF13358 DDE superfamily endonuclease CMV05_17180 PF00175 Oxidoreductase NAD-binding domain CMV05_17180 PF00111 2Fe-2S iron-sulfur cluster binding domain CMV05_17180 PF00970 Oxidoreductase FAD-binding domain CMV05_17185 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CMV05_17185 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CMV05_17190 PF01627 Hpt domain CMV05_17190 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CMV05_17190 PF00512 His Kinase A (phospho-acceptor) domain CMV05_17190 PF00672 HAMP domain CMV05_17190 PF00072 Response regulator receiver domain CMV05_17190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_17205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CMV05_17210 PF00873 AcrB/AcrD/AcrF family CMV05_17220 PF00356 Bacterial regulatory proteins, lacI family CMV05_17225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMV05_17250 PF00990 Diguanylate cyclase, GGDEF domain CMV05_17265 PF01048 Phosphorylase superfamily CMV05_17270 PF08349 Protein of unknown function (DUF1722) CMV05_17275 PF13411 MerR HTH family regulatory protein CMV05_17280 PF03441 FAD binding domain of DNA photolyase CMV05_17280 PF00875 DNA photolyase CMV05_17285 PF03734 L,D-transpeptidase catalytic domain CMV05_17285 PF01476 LysM domain CMV05_17285 PF17969 L,D-transpeptidase C-terminal domain CMV05_17295 PF00271 Helicase conserved C-terminal domain CMV05_17295 PF00270 DEAD/DEAH box helicase CMV05_17305 PF01609 Transposase DDE domain CMV05_17325 PF13808 DDE_Tnp_1-associated CMV05_17325 PF01609 Transposase DDE domain CMV05_17360 PF13358 DDE superfamily endonuclease CMV05_17375 PF00128 Alpha amylase, catalytic domain CMV05_17380 PF00248 Aldo/keto reductase family CMV05_17390 PF12704 MacB-like periplasmic core domain CMV05_17390 PF02687 FtsX-like permease family CMV05_17390 PF00005 ABC transporter CMV05_17395 PF12704 MacB-like periplasmic core domain CMV05_17395 PF02687 FtsX-like permease family CMV05_17410 PF06580 Histidine kinase CMV05_17410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_17415 PF00072 Response regulator receiver domain CMV05_17415 PF04397 LytTr DNA-binding domain CMV05_17430 PF13006 Insertion element 4 transposase N-terminal CMV05_17430 PF01609 Transposase DDE domain CMV05_17440 PF00196 Bacterial regulatory proteins, luxR family CMV05_17445 PF08402 TOBE domain CMV05_17445 PF00005 ABC transporter CMV05_17455 PF01547 Bacterial extracellular solute-binding protein CMV05_17460 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_17460 PF14785 Maltose transport system permease protein MalF P2 domain CMV05_17465 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_17480 PF00765 Autoinducer synthase CMV05_17490 PF13006 Insertion element 4 transposase N-terminal CMV05_17490 PF01609 Transposase DDE domain CMV05_17495 PF00455 DeoR C terminal sensor domain CMV05_17495 PF08220 DeoR-like helix-turn-helix domain CMV05_17500 PF17151 Periplasmic sensor domain CMV05_17500 PF00990 Diguanylate cyclase, GGDEF domain CMV05_17520 PF01609 Transposase DDE domain CMV05_17520 PF13006 Insertion element 4 transposase N-terminal CMV05_17530 PF05661 Protein of unknown function (DUF808) CMV05_17535 PF05958 tRNA (Uracil-5-)-methyltransferase CMV05_17545 PF03476 MOSC N-terminal beta barrel domain CMV05_17545 PF03473 MOSC domain CMV05_17545 PF00111 2Fe-2S iron-sulfur cluster binding domain CMV05_17550 PF07662 Na+ dependent nucleoside transporter C-terminus CMV05_17550 PF01773 Na+ dependent nucleoside transporter N-terminus CMV05_17550 PF07670 Nucleoside recognition CMV05_17565 PF00158 Sigma-54 interaction domain CMV05_17565 PF01590 GAF domain CMV05_17570 PF00175 Oxidoreductase NAD-binding domain CMV05_17570 PF00042 Globin CMV05_17570 PF00970 Oxidoreductase FAD-binding domain CMV05_17575 PF07152 YaeQ protein CMV05_17580 PF00313 'Cold-shock' DNA-binding domain CMV05_17605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CMV05_17605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CMV05_17610 PF00478 IMP dehydrogenase / GMP reductase domain CMV05_17645 PF13737 Transposase DDE domain CMV05_17665 PF05638 Type VI secretion system effector, Hcp CMV05_17670 PF04717 Type VI secretion system, phage-baseplate injector CMV05_17670 PF16671 Actin cross-linking domain CMV05_17695 PF13808 DDE_Tnp_1-associated CMV05_17695 PF01609 Transposase DDE domain CMV05_17710 PF01610 Transposase CMV05_17710 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_17710 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_17730 PF13358 DDE superfamily endonuclease CMV05_17745 PF03608 PTS system enzyme II sorbitol-specific factor CMV05_17750 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CMV05_17750 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CMV05_17755 PF03829 PTS system glucitol/sorbitol-specific IIA component CMV05_17760 PF00106 short chain dehydrogenase CMV05_17765 PF06923 Glucitol operon activator protein (GutM) CMV05_17770 PF00455 DeoR C terminal sensor domain CMV05_17770 PF08220 DeoR-like helix-turn-helix domain CMV05_17775 PF03608 PTS system enzyme II sorbitol-specific factor CMV05_17795 PF03829 PTS system glucitol/sorbitol-specific IIA component CMV05_17800 PF00686 Starch binding domain CMV05_17800 PF00128 Alpha amylase, catalytic domain CMV05_17805 PF03459 TOBE domain CMV05_17805 PF00005 ABC transporter CMV05_17805 PF17912 MalK OB fold domain CMV05_17815 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_17815 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CMV05_17825 PF13416 Bacterial extracellular solute-binding protein CMV05_17830 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_17835 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_17840 PF16657 Maltogenic Amylase, C-terminal domain CMV05_17840 PF02903 Alpha amylase, N-terminal ig-like domain CMV05_17840 PF00128 Alpha amylase, catalytic domain CMV05_17860 PF02355 Protein export membrane protein CMV05_17860 PF13721 SecD export protein N-terminal TM region CMV05_17860 PF07549 SecD/SecF GG Motif CMV05_17865 PF02355 Protein export membrane protein CMV05_17865 PF07549 SecD/SecF GG Motif CMV05_17875 PF03264 NapC/NirT cytochrome c family, N-terminal region CMV05_17880 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CMV05_17885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CMV05_17885 PF00384 Molybdopterin oxidoreductase CMV05_17885 PF01568 Molydopterin dinucleotide binding domain CMV05_17895 PF13187 4Fe-4S dicluster domain CMV05_17895 PF12838 4Fe-4S dicluster domain CMV05_17900 PF07730 Histidine kinase CMV05_17900 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CMV05_17900 PF00672 HAMP domain CMV05_17900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_17905 PF00072 Response regulator receiver domain CMV05_17905 PF00196 Bacterial regulatory proteins, luxR family CMV05_17910 PF03606 C4-dicarboxylate anaerobic carrier CMV05_17920 PF01609 Transposase DDE domain CMV05_17940 PF12849 PBP superfamily domain CMV05_17950 PF00575 S1 RNA binding domain CMV05_17950 PF08206 Ribonuclease B OB domain CMV05_17950 PF00773 RNB domain CMV05_17955 PF00271 Helicase conserved C-terminal domain CMV05_17955 PF00270 DEAD/DEAH box helicase CMV05_17955 PF03880 DbpA RNA binding domain CMV05_17960 PF03129 Anticodon binding domain CMV05_17960 PF02824 TGS domain CMV05_17960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CMV05_17960 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CMV05_17965 PF05198 Translation initiation factor IF-3, N-terminal domain CMV05_17965 PF00707 Translation initiation factor IF-3, C-terminal domain CMV05_17970 PF01632 Ribosomal protein L35 CMV05_17975 PF00453 Ribosomal protein L20 CMV05_17980 PF00589 Phage integrase family CMV05_17980 PF13495 Phage integrase, N-terminal SAM-like domain CMV05_18020 PF00583 Acetyltransferase (GNAT) family CMV05_18075 PF01411 tRNA synthetases class II (A) CMV05_18075 PF02272 DHHA1 domain CMV05_18075 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CMV05_18115 PF13817 IS66 C-terminal element CMV05_18115 PF13005 zinc-finger binding domain of transposase IS66 CMV05_18115 PF03050 Transposase IS66 family CMV05_18115 PF13007 Transposase C of IS166 homeodomain CMV05_18135 PF14602 Hexapeptide repeat of succinyl-transferase CMV05_18135 PF12464 Maltose acetyltransferase CMV05_18160 PF01610 Transposase CMV05_18160 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_18160 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_18200 PF00872 Transposase, Mutator family CMV05_18230 PF13358 DDE superfamily endonuclease CMV05_18250 PF00672 HAMP domain CMV05_18250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_18250 PF17200 Single Cache domain 2 CMV05_18260 PF00313 'Cold-shock' DNA-binding domain CMV05_18265 PF00990 Diguanylate cyclase, GGDEF domain CMV05_18280 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CMV05_18280 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CMV05_18280 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CMV05_18285 PF02233 NAD(P) transhydrogenase beta subunit CMV05_18295 PF00486 Transcriptional regulatory protein, C terminal CMV05_18295 PF00072 Response regulator receiver domain CMV05_18310 PF03701 Uncharacterised protein family (UPF0181) CMV05_18315 PF00872 Transposase, Mutator family CMV05_18325 PF03466 LysR substrate binding domain CMV05_18325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_18330 PF13380 CoA binding domain CMV05_18330 PF00583 Acetyltransferase (GNAT) family CMV05_18330 PF13607 Succinyl-CoA ligase like flavodoxin domain CMV05_18340 PF07478 D-ala D-ala ligase C-terminus CMV05_18340 PF01820 D-ala D-ala ligase N-terminus CMV05_18355 PF01253 Translation initiation factor SUI1 CMV05_18360 PF13808 DDE_Tnp_1-associated CMV05_18360 PF01609 Transposase DDE domain CMV05_18530 PF13358 DDE superfamily endonuclease CMV05_18540 PF00872 Transposase, Mutator family CMV05_18640 PF01610 Transposase CMV05_18640 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_18640 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_18650 PF13007 Transposase C of IS166 homeodomain CMV05_18650 PF13005 zinc-finger binding domain of transposase IS66 CMV05_18650 PF03050 Transposase IS66 family CMV05_18650 PF13817 IS66 C-terminal element CMV05_18660 PF13599 Pentapeptide repeats (9 copies) CMV05_18870 PF13005 zinc-finger binding domain of transposase IS66 CMV05_18870 PF13817 IS66 C-terminal element CMV05_18870 PF13007 Transposase C of IS166 homeodomain CMV05_18870 PF03050 Transposase IS66 family CMV05_18880 PF13599 Pentapeptide repeats (9 copies) CMV05_18915 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_18925 PF13358 DDE superfamily endonuclease CMV05_18945 PF01609 Transposase DDE domain CMV05_18980 PF13358 DDE superfamily endonuclease CMV05_18985 PF03466 LysR substrate binding domain CMV05_18985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_19010 PF02810 SEC-C motif CMV05_19010 PF07517 SecA DEAD-like domain CMV05_19010 PF01043 SecA preprotein cross-linking domain CMV05_19010 PF07516 SecA Wing and Scaffold domain CMV05_19025 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CMV05_19065 PF03050 Transposase IS66 family CMV05_19065 PF13817 IS66 C-terminal element CMV05_19065 PF13005 zinc-finger binding domain of transposase IS66 CMV05_19065 PF13007 Transposase C of IS166 homeodomain CMV05_19085 PF13358 DDE superfamily endonuclease CMV05_19115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CMV05_19120 PF01609 Transposase DDE domain CMV05_19135 PF13005 zinc-finger binding domain of transposase IS66 CMV05_19135 PF03050 Transposase IS66 family CMV05_19135 PF13817 IS66 C-terminal element CMV05_19135 PF13007 Transposase C of IS166 homeodomain CMV05_19190 PF13005 zinc-finger binding domain of transposase IS66 CMV05_19190 PF13007 Transposase C of IS166 homeodomain CMV05_19190 PF13817 IS66 C-terminal element CMV05_19190 PF03050 Transposase IS66 family CMV05_19240 PF13007 Transposase C of IS166 homeodomain CMV05_19240 PF13005 zinc-finger binding domain of transposase IS66 CMV05_19240 PF03050 Transposase IS66 family CMV05_19240 PF13817 IS66 C-terminal element CMV05_19265 PF01610 Transposase CMV05_19265 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_19265 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_19280 PF13358 DDE superfamily endonuclease CMV05_19300 PF00872 Transposase, Mutator family CMV05_19315 PF13005 zinc-finger binding domain of transposase IS66 CMV05_19315 PF03050 Transposase IS66 family CMV05_19315 PF13007 Transposase C of IS166 homeodomain CMV05_19315 PF13817 IS66 C-terminal element CMV05_19320 PF01610 Transposase CMV05_19320 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_19320 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_19335 PF00872 Transposase, Mutator family CMV05_19365 PF01609 Transposase DDE domain CMV05_19390 PF13358 DDE superfamily endonuclease CMV05_19435 PF03050 Transposase IS66 family CMV05_19435 PF13007 Transposase C of IS166 homeodomain CMV05_19435 PF13005 zinc-finger binding domain of transposase IS66 CMV05_19435 PF13817 IS66 C-terminal element CMV05_19445 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CMV05_19505 PF13358 DDE superfamily endonuclease CMV05_19560 PF03050 Transposase IS66 family CMV05_19560 PF13005 zinc-finger binding domain of transposase IS66 CMV05_19560 PF13817 IS66 C-terminal element CMV05_19560 PF13007 Transposase C of IS166 homeodomain CMV05_19575 PF00872 Transposase, Mutator family CMV05_19630 PF02798 Glutathione S-transferase, N-terminal domain CMV05_19630 PF00043 Glutathione S-transferase, C-terminal domain CMV05_19635 PF03479 Plants and Prokaryotes Conserved (PCC) domain CMV05_19635 PF12804 MobA-like NTP transferase domain CMV05_19635 PF00132 Bacterial transferase hexapeptide (six repeats) CMV05_19640 PF00005 ABC transporter CMV05_19640 PF12848 ABC transporter CMV05_19645 PF12793 Sugar transport-related sRNA regulator N-term CMV05_19645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMV05_19655 PF03061 Thioesterase superfamily CMV05_19665 PF03831 PhnA domain CMV05_19665 PF08274 PhnA Zinc-Ribbon CMV05_19675 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_19675 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_19675 PF01610 Transposase CMV05_19680 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CMV05_19680 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CMV05_19685 PF00085 Thioredoxin CMV05_19690 PF07690 Major Facilitator Superfamily CMV05_19695 PF11756 Nitrous oxide-stimulated promoter CMV05_19705 PF01513 ATP-NAD kinase CMV05_19710 PF10414 Sirohaem synthase dimerisation region CMV05_19710 PF14824 Sirohaem biosynthesis protein central CMV05_19710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CMV05_19720 PF13806 Rieske-like [2Fe-2S] domain CMV05_19725 PF07992 Pyridine nucleotide-disulphide oxidoreductase CMV05_19725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CMV05_19725 PF18267 Rubredoxin NAD+ reductase C-terminal domain CMV05_19725 PF04324 BFD-like [2Fe-2S] binding domain CMV05_19725 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CMV05_19735 PF13977 BetI-type transcriptional repressor, C-terminal CMV05_19735 PF00440 Bacterial regulatory proteins, tetR family CMV05_19740 PF00171 Aldehyde dehydrogenase family CMV05_19745 PF00732 GMC oxidoreductase CMV05_19745 PF05199 GMC oxidoreductase CMV05_19750 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CMV05_19755 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_19760 PF00005 ABC transporter CMV05_19760 PF00571 CBS domain CMV05_19775 PF05762 VWA domain containing CoxE-like protein CMV05_19780 PF07728 AAA domain (dynein-related subfamily) CMV05_19780 PF17868 AAA lid domain CMV05_19780 PF12592 Protein of unknown function (DUF3763) CMV05_19790 PF01212 Beta-eliminating lyase CMV05_19800 PF00271 Helicase conserved C-terminal domain CMV05_19800 PF00270 DEAD/DEAH box helicase CMV05_19805 PF03222 Tryptophan/tyrosine permease family CMV05_19810 PF00672 HAMP domain CMV05_19810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_19815 PF16363 GDP-mannose 4,6 dehydratase CMV05_19820 PF03746 LamB/YcsF family CMV05_19830 PF02626 Carboxyltransferase domain, subdomain A and B CMV05_19845 PF00005 ABC transporter CMV05_19850 PF13472 GDSL-like Lipase/Acylhydrolase family CMV05_19855 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CMV05_19855 PF12241 Trans-2-enoyl-CoA reductase catalytic region CMV05_19855 PF07055 Enoyl reductase FAD binding domain CMV05_19860 PF00990 Diguanylate cyclase, GGDEF domain CMV05_19860 PF00498 FHA domain CMV05_19860 PF00563 EAL domain CMV05_19870 PF00226 DnaJ domain CMV05_19870 PF01556 DnaJ C terminal domain CMV05_19870 PF00684 DnaJ central domain CMV05_19890 PF13419 Haloacid dehalogenase-like hydrolase CMV05_19895 PF11849 Domain of unknown function (DUF3369) CMV05_19910 PF00294 pfkB family carbohydrate kinase CMV05_19915 PF00990 Diguanylate cyclase, GGDEF domain CMV05_19915 PF00563 EAL domain CMV05_19915 PF13188 PAS domain CMV05_19915 PF03707 Bacterial signalling protein N terminal repeat CMV05_19920 PF00194 Eukaryotic-type carbonic anhydrase CMV05_19935 PF00491 Arginase family CMV05_19940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CMV05_19940 PF17810 Arginine decarboxylase helical bundle domain CMV05_19940 PF17944 Arginine decarboxylase C-terminal helical extension CMV05_19950 PF00005 ABC transporter CMV05_19950 PF00571 CBS domain CMV05_19955 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_19965 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_19965 PF01610 Transposase CMV05_19965 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_19970 PF00854 POT family CMV05_19980 PF07702 UTRA domain CMV05_19980 PF00392 Bacterial regulatory proteins, gntR family CMV05_19985 PF14760 Rnk N-terminus CMV05_19985 PF01272 Transcription elongation factor, GreA/GreB, C-term CMV05_19990 PF13419 Haloacid dehalogenase-like hydrolase CMV05_20005 PF00037 4Fe-4S binding domain CMV05_20005 PF11953 Domain of unknown function (DUF3470) CMV05_20010 PF00588 SpoU rRNA Methylase family CMV05_20010 PF08032 RNA 2'-O ribose methyltransferase substrate binding CMV05_20015 PF01268 Formate--tetrahydrofolate ligase CMV05_20020 PF01641 SelR domain CMV05_20020 PF01625 Peptide methionine sulfoxide reductase CMV05_20025 PF01227 GTP cyclohydrolase I CMV05_20030 PF03454 MoeA C-terminal region (domain IV) CMV05_20030 PF00994 Probable molybdopterin binding domain CMV05_20030 PF03453 MoeA N-terminal region (domain I and II) CMV05_20035 PF00899 ThiF family CMV05_20040 PF00581 Rhodanese-like domain CMV05_20045 PF00704 Glycosyl hydrolases family 18 CMV05_20045 PF08329 Chitinase A, N-terminal domain CMV05_20055 PF00923 Transaldolase/Fructose-6-phosphate aldolase CMV05_20060 PF02779 Transketolase, pyrimidine binding domain CMV05_20060 PF02780 Transketolase, C-terminal domain CMV05_20060 PF00456 Transketolase, thiamine diphosphate binding domain CMV05_20075 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CMV05_20075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CMV05_20080 PF13419 Haloacid dehalogenase-like hydrolase CMV05_20085 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_20085 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_20085 PF01610 Transposase CMV05_20090 PF12729 Four helix bundle sensory module for signal transduction CMV05_20090 PF00672 HAMP domain CMV05_20090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_20095 PF04264 YceI-like domain CMV05_20100 PF01292 Prokaryotic cytochrome b561 CMV05_20115 PF13808 DDE_Tnp_1-associated CMV05_20115 PF01609 Transposase DDE domain CMV05_20125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CMV05_20125 PF00005 ABC transporter CMV05_20130 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_20130 PF12911 N-terminal TM domain of oligopeptide transport permease C CMV05_20135 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_20140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CMV05_20160 PF13358 DDE superfamily endonuclease CMV05_20170 PF00155 Aminotransferase class I and II CMV05_20180 PF13597 Anaerobic ribonucleoside-triphosphate reductase CMV05_20180 PF03477 ATP cone domain CMV05_20195 PF13358 DDE superfamily endonuclease CMV05_20205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CMV05_20205 PF00529 HlyD membrane-fusion protein of T1SS CMV05_20215 PF04143 Sulphur transport CMV05_20235 PF00872 Transposase, Mutator family CMV05_20245 PF00072 Response regulator receiver domain CMV05_20245 PF02954 Bacterial regulatory protein, Fis family CMV05_20245 PF00158 Sigma-54 interaction domain CMV05_20250 PF00990 Diguanylate cyclase, GGDEF domain CMV05_20250 PF03707 Bacterial signalling protein N terminal repeat CMV05_20250 PF00563 EAL domain CMV05_20250 PF13188 PAS domain CMV05_20255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_20255 PF00512 His Kinase A (phospho-acceptor) domain CMV05_20260 PF00989 PAS fold CMV05_20260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_20260 PF00512 His Kinase A (phospho-acceptor) domain CMV05_20270 PF00072 Response regulator receiver domain CMV05_20285 PF00360 Phytochrome region CMV05_20285 PF00990 Diguanylate cyclase, GGDEF domain CMV05_20285 PF01590 GAF domain CMV05_20285 PF00563 EAL domain CMV05_20295 PF00005 ABC transporter CMV05_20295 PF03459 TOBE domain CMV05_20300 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_20310 PF07685 CobB/CobQ-like glutamine amidotransferase domain CMV05_20310 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CMV05_20315 PF04076 Bacterial OB fold (BOF) protein CMV05_20330 PF13358 DDE superfamily endonuclease CMV05_20340 PF00483 Nucleotidyl transferase CMV05_20345 PF00704 Glycosyl hydrolases family 18 CMV05_20345 PF06483 Chitinase C CMV05_20350 PF12833 Helix-turn-helix domain CMV05_20350 PF06719 AraC-type transcriptional regulator N-terminus CMV05_20355 PF00465 Iron-containing alcohol dehydrogenase CMV05_20360 PF02954 Bacterial regulatory protein, Fis family CMV05_20360 PF14532 Sigma-54 interaction domain CMV05_20360 PF00072 Response regulator receiver domain CMV05_20365 PF00672 HAMP domain CMV05_20365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_20365 PF00512 His Kinase A (phospho-acceptor) domain CMV05_20380 PF07690 Major Facilitator Superfamily CMV05_20385 PF02887 Pyruvate kinase, alpha/beta domain CMV05_20385 PF00224 Pyruvate kinase, barrel domain CMV05_20390 PF01627 Hpt domain CMV05_20390 PF00512 His Kinase A (phospho-acceptor) domain CMV05_20390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_20390 PF00072 Response regulator receiver domain CMV05_20390 PF00672 HAMP domain CMV05_20395 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CMV05_20400 PF02142 MGS-like domain CMV05_20405 PF12462 DNA helicase IV / RNA helicase N terminal CMV05_20405 PF00580 UvrD/REP helicase N-terminal domain CMV05_20405 PF13361 UvrD-like helicase C-terminal domain CMV05_20410 PF12805 FUSC-like inner membrane protein yccS CMV05_20430 PF01266 FAD dependent oxidoreductase CMV05_20430 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CMV05_20445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_20445 PF00072 Response regulator receiver domain CMV05_20445 PF09308 LuxQ, periplasmic CMV05_20445 PF00512 His Kinase A (phospho-acceptor) domain CMV05_20450 PF13407 Periplasmic binding protein domain CMV05_20460 PF01541 GIY-YIG catalytic domain CMV05_20475 PF04363 Protein of unknown function (DUF496) CMV05_20485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CMV05_20485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CMV05_20490 PF00230 Major intrinsic protein CMV05_20495 PF04324 BFD-like [2Fe-2S] binding domain CMV05_20495 PF01266 FAD dependent oxidoreductase CMV05_20500 PF00890 FAD binding domain CMV05_20505 PF02754 Cysteine-rich domain CMV05_20505 PF13183 4Fe-4S dicluster domain CMV05_20510 PF01610 Transposase CMV05_20510 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_20510 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_20515 PF00005 ABC transporter CMV05_20520 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_20525 PF00528 Binding-protein-dependent transport system inner membrane component CMV05_20535 PF00872 Transposase, Mutator family CMV05_20550 PF00155 Aminotransferase class I and II CMV05_20550 PF00392 Bacterial regulatory proteins, gntR family CMV05_20555 PF13302 Acetyltransferase (GNAT) domain CMV05_20570 PF03413 Peptidase propeptide and YPEB domain CMV05_20570 PF01447 Thermolysin metallopeptidase, catalytic domain CMV05_20570 PF02868 Thermolysin metallopeptidase, alpha-helical domain CMV05_20570 PF04151 Bacterial pre-peptidase C-terminal domain CMV05_20570 PF07504 Fungalysin/Thermolysin Propeptide Motif CMV05_20590 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CMV05_20590 PF18416 N-acetylglucosamine binding protein domain 2 CMV05_20595 PF07690 Major Facilitator Superfamily CMV05_20600 PF03009 Glycerophosphoryl diester phosphodiesterase family CMV05_20605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_20605 PF03466 LysR substrate binding domain CMV05_20610 PF03306 Alpha-acetolactate decarboxylase CMV05_20615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CMV05_20615 PF00205 Thiamine pyrophosphate enzyme, central domain CMV05_20615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CMV05_20635 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_20635 PF01610 Transposase CMV05_20635 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_20645 PF01609 Transposase DDE domain CMV05_20645 PF13808 DDE_Tnp_1-associated CMV05_20665 PF00801 PKD domain CMV05_20665 PF05547 Immune inhibitor A peptidase M6 CMV05_20670 PF03280 Proteobacterial lipase chaperone protein CMV05_20675 PF00561 alpha/beta hydrolase fold CMV05_20680 PF07968 Leukocidin/Hemolysin toxin family CMV05_20680 PF16458 Beta-prism lectin CMV05_20680 PF12563 Hemolytic toxin N terminal CMV05_20685 PF00657 GDSL-like Lipase/Acylhydrolase CMV05_20690 PF01037 Lrp/AsnC ligand binding domain CMV05_20700 PF13006 Insertion element 4 transposase N-terminal CMV05_20700 PF01609 Transposase DDE domain CMV05_20705 PF00012 Hsp70 protein CMV05_20715 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_20715 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_20715 PF01610 Transposase CMV05_20730 PF00696 Amino acid kinase family CMV05_20730 PF13840 ACT domain CMV05_20735 PF06339 Ectoine synthase CMV05_20740 PF00202 Aminotransferase class-III CMV05_20745 PF00583 Acetyltransferase (GNAT) family CMV05_20755 PF01467 Cytidylyltransferase-like CMV05_20760 PF02540 NAD synthase CMV05_20790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_20790 PF00672 HAMP domain CMV05_20790 PF02743 Cache domain CMV05_20795 PF00128 Alpha amylase, catalytic domain CMV05_20815 PF01609 Transposase DDE domain CMV05_20815 PF13808 DDE_Tnp_1-associated CMV05_20825 PF07726 ATPase family associated with various cellular activities (AAA) CMV05_20825 PF17863 AAA lid domain CMV05_20830 PF01882 Protein of unknown function DUF58 CMV05_20845 PF13519 von Willebrand factor type A domain CMV05_20860 PF00990 Diguanylate cyclase, GGDEF domain CMV05_20880 PF12843 Putative quorum-sensing-regulated virulence factor CMV05_20885 PF00884 Sulfatase CMV05_20900 PF01219 Prokaryotic diacylglycerol kinase CMV05_20905 PF01609 Transposase DDE domain CMV05_20905 PF13808 DDE_Tnp_1-associated CMV05_20950 PF13358 DDE superfamily endonuclease CMV05_20965 PF00107 Zinc-binding dehydrogenase CMV05_20965 PF08240 Alcohol dehydrogenase GroES-like domain CMV05_20970 PF00155 Aminotransferase class I and II CMV05_20975 PF03466 LysR substrate binding domain CMV05_20975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_20980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CMV05_20990 PF07690 Major Facilitator Superfamily CMV05_20995 PF00196 Bacterial regulatory proteins, luxR family CMV05_20995 PF00072 Response regulator receiver domain CMV05_21000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_21000 PF07730 Histidine kinase CMV05_21000 PF05231 MASE1 CMV05_21005 PF07690 Major Facilitator Superfamily CMV05_21035 PF04013 Putative SAM-dependent RNA methyltransferase CMV05_21050 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CMV05_21050 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CMV05_21055 PF01022 Bacterial regulatory protein, arsR family CMV05_21060 PF13358 DDE superfamily endonuclease CMV05_21065 PF01758 Sodium Bile acid symporter family CMV05_21070 PF01022 Bacterial regulatory protein, arsR family CMV05_21075 PF01740 STAS domain CMV05_21075 PF00916 Sulfate permease family CMV05_21080 PF00582 Universal stress protein family CMV05_21085 PF17327 Acyl homoserine lactone synthase CMV05_21090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_21090 PF00072 Response regulator receiver domain CMV05_21105 PF12833 Helix-turn-helix domain CMV05_21110 PF02311 AraC-like ligand binding domain CMV05_21110 PF12833 Helix-turn-helix domain CMV05_21115 PF00593 TonB dependent receptor CMV05_21115 PF07715 TonB-dependent Receptor Plug Domain CMV05_21120 PF07690 Major Facilitator Superfamily CMV05_21125 PF00550 Phosphopantetheine attachment site CMV05_21125 PF00501 AMP-binding enzyme CMV05_21125 PF00668 Condensation domain CMV05_21125 PF08242 Methyltransferase domain CMV05_21130 PF00698 Acyl transferase domain CMV05_21130 PF00668 Condensation domain CMV05_21130 PF16197 Ketoacyl-synthetase C-terminal extension CMV05_21130 PF00109 Beta-ketoacyl synthase, N-terminal domain CMV05_21130 PF02801 Beta-ketoacyl synthase, C-terminal domain CMV05_21130 PF00698 Acyl transferase domain CMV05_21130 PF00668 Condensation domain CMV05_21130 PF00550 Phosphopantetheine attachment site CMV05_21130 PF16197 Ketoacyl-synthetase C-terminal extension CMV05_21130 PF00550 Phosphopantetheine attachment site CMV05_21130 PF00109 Beta-ketoacyl synthase, N-terminal domain CMV05_21130 PF02801 Beta-ketoacyl synthase, C-terminal domain CMV05_21145 PF00425 chorismate binding enzyme CMV05_21150 PF00501 AMP-binding enzyme CMV05_21150 PF13193 AMP-binding enzyme C-terminal domain CMV05_21155 PF00664 ABC transporter transmembrane region CMV05_21155 PF00005 ABC transporter CMV05_21160 PF00005 ABC transporter CMV05_21160 PF00664 ABC transporter transmembrane region CMV05_21185 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_21230 PF01609 Transposase DDE domain CMV05_21235 PF01420 Type I restriction modification DNA specificity domain CMV05_21240 PF02384 N-6 DNA Methylase CMV05_21240 PF12161 HsdM N-terminal domain CMV05_21250 PF00158 Sigma-54 interaction domain CMV05_21250 PF00072 Response regulator receiver domain CMV05_21250 PF02954 Bacterial regulatory protein, Fis family CMV05_21285 PF01610 Transposase CMV05_21285 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_21285 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_21295 PF02264 LamB porin CMV05_21305 PF00128 Alpha amylase, catalytic domain CMV05_21305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CMV05_21315 PF08220 DeoR-like helix-turn-helix domain CMV05_21315 PF00455 DeoR C terminal sensor domain CMV05_21320 PF03611 PTS system sugar-specific permease component CMV05_21325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CMV05_21330 PF00596 Class II Aldolase and Adducin N-terminal domain CMV05_21340 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CMV05_21345 PF01261 Xylose isomerase-like TIM barrel CMV05_21360 PF03707 Bacterial signalling protein N terminal repeat CMV05_21360 PF00990 Diguanylate cyclase, GGDEF domain CMV05_21360 PF00563 EAL domain CMV05_21370 PF00664 ABC transporter transmembrane region CMV05_21370 PF00005 ABC transporter CMV05_21375 PF04286 Protein of unknown function (DUF445) CMV05_21380 PF01569 PAP2 superfamily CMV05_21390 PF13358 DDE superfamily endonuclease CMV05_21405 PF05025 RbsD / FucU transport protein family CMV05_21410 PF00005 ABC transporter CMV05_21415 PF02653 Branched-chain amino acid transport system / permease component CMV05_21420 PF13407 Periplasmic binding protein domain CMV05_21425 PF00294 pfkB family carbohydrate kinase CMV05_21430 PF00356 Bacterial regulatory proteins, lacI family CMV05_21445 PF03466 LysR substrate binding domain CMV05_21445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CMV05_21450 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CMV05_21450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CMV05_21455 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CMV05_21460 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CMV05_21460 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CMV05_21470 PF05362 Lon protease (S16) C-terminal proteolytic domain CMV05_21470 PF13654 AAA domain CMV05_21475 PF13358 DDE superfamily endonuclease CMV05_21495 PF02743 Cache domain CMV05_21495 PF00672 HAMP domain CMV05_21495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_21505 PF13358 DDE superfamily endonuclease CMV05_21515 PF13808 DDE_Tnp_1-associated CMV05_21515 PF01609 Transposase DDE domain CMV05_21525 PF05638 Type VI secretion system effector, Hcp CMV05_21530 PF02806 Alpha amylase, C-terminal all-beta domain CMV05_21530 PF00128 Alpha amylase, catalytic domain CMV05_21530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CMV05_21535 PF02446 4-alpha-glucanotransferase CMV05_21540 PF00343 Carbohydrate phosphorylase CMV05_21545 PF00196 Bacterial regulatory proteins, luxR family CMV05_21545 PF17874 MalT-like TPR region CMV05_21550 PF10928 Protein of unknown function (DUF2810) CMV05_21555 PF00672 HAMP domain CMV05_21555 PF17200 Single Cache domain 2 CMV05_21555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_21565 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_21580 PF01610 Transposase CMV05_21580 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_21580 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_21600 PF13005 zinc-finger binding domain of transposase IS66 CMV05_21600 PF13007 Transposase C of IS166 homeodomain CMV05_21600 PF13817 IS66 C-terminal element CMV05_21600 PF03050 Transposase IS66 family CMV05_21610 PF02743 Cache domain CMV05_21610 PF00672 HAMP domain CMV05_21610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_21615 PF14706 Transposase DNA-binding CMV05_21615 PF02281 Transposase Tn5 dimerisation domain CMV05_21615 PF01609 Transposase DDE domain CMV05_21620 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CMV05_21630 PF00171 Aldehyde dehydrogenase family CMV05_21635 PF01037 Lrp/AsnC ligand binding domain CMV05_21640 PF02743 Cache domain CMV05_21640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_21640 PF00672 HAMP domain CMV05_21650 PF00474 Sodium:solute symporter family CMV05_21660 PF01619 Proline dehydrogenase CMV05_21660 PF14850 DNA-binding domain of Proline dehydrogenase CMV05_21660 PF00171 Aldehyde dehydrogenase family CMV05_21660 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CMV05_21665 PF12833 Helix-turn-helix domain CMV05_21675 PF03781 Sulfatase-modifying factor enzyme 1 CMV05_21685 PF01243 Pyridoxamine 5'-phosphate oxidase CMV05_21685 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CMV05_21690 PF00529 HlyD membrane-fusion protein of T1SS CMV05_21705 PF03412 Peptidase C39 family CMV05_21705 PF00005 ABC transporter CMV05_21705 PF00664 ABC transporter transmembrane region CMV05_21715 PF00072 Response regulator receiver domain CMV05_21715 PF00990 Diguanylate cyclase, GGDEF domain CMV05_21725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_21725 PF02743 Cache domain CMV05_21725 PF00672 HAMP domain CMV05_21730 PF01339 CheB methylesterase CMV05_21730 PF00072 Response regulator receiver domain CMV05_21735 PF03975 CheD chemotactic sensory transduction CMV05_21740 PF03705 CheR methyltransferase, all-alpha domain CMV05_21740 PF01739 CheR methyltransferase, SAM binding domain CMV05_21745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CMV05_21745 PF00672 HAMP domain CMV05_21745 PF02203 Tar ligand binding domain homologue CMV05_21750 PF01584 CheW-like domain CMV05_21755 PF01584 CheW-like domain CMV05_21760 PF01627 Hpt domain CMV05_21760 PF01584 CheW-like domain CMV05_21760 PF09078 CheY binding CMV05_21760 PF02895 Signal transducing histidine kinase, homodimeric domain CMV05_21760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CMV05_21765 PF00486 Transcriptional regulatory protein, C terminal CMV05_21765 PF00072 Response regulator receiver domain CMV05_21775 PF13718 GNAT acetyltransferase 2 CMV05_21775 PF05127 Helicase CMV05_21780 PF13416 Bacterial extracellular solute-binding protein CMV05_21785 PF02195 ParB-like nuclease domain CMV05_21785 PF08775 ParB family CMV05_21790 PF13614 AAA domain CMV05_21790 PF18607 ParA helix turn helix domain CMV05_21820 PF13007 Transposase C of IS166 homeodomain CMV05_21820 PF13817 IS66 C-terminal element CMV05_21820 PF13005 zinc-finger binding domain of transposase IS66 CMV05_21820 PF03050 Transposase IS66 family CMV05_21830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_21855 PF13007 Transposase C of IS166 homeodomain CMV05_21855 PF13005 zinc-finger binding domain of transposase IS66 CMV05_21855 PF13817 IS66 C-terminal element CMV05_21855 PF03050 Transposase IS66 family CMV05_21885 PF13737 Transposase DDE domain CMV05_21910 PF03050 Transposase IS66 family CMV05_21910 PF13817 IS66 C-terminal element CMV05_21910 PF13007 Transposase C of IS166 homeodomain CMV05_21910 PF13005 zinc-finger binding domain of transposase IS66 CMV05_21925 PF13007 Transposase C of IS166 homeodomain CMV05_21925 PF03050 Transposase IS66 family CMV05_21925 PF13005 zinc-finger binding domain of transposase IS66 CMV05_21925 PF13817 IS66 C-terminal element CMV05_21940 PF13005 zinc-finger binding domain of transposase IS66 CMV05_21940 PF13817 IS66 C-terminal element CMV05_21940 PF13007 Transposase C of IS166 homeodomain CMV05_21940 PF03050 Transposase IS66 family CMV05_21945 PF10410 DnaB-helicase binding domain of primase CMV05_21945 PF08278 DNA primase DnaG DnaB-binding CMV05_21945 PF08275 DNA primase catalytic core, N-terminal domain CMV05_21945 PF01807 CHC2 zinc finger CMV05_22020 PF00872 Transposase, Mutator family CMV05_22065 PF00872 Transposase, Mutator family CMV05_22085 PF00872 Transposase, Mutator family CMV05_22130 PF02810 SEC-C motif CMV05_22130 PF05225 helix-turn-helix, Psq domain CMV05_22170 PF00872 Transposase, Mutator family CMV05_22200 PF13005 zinc-finger binding domain of transposase IS66 CMV05_22200 PF13007 Transposase C of IS166 homeodomain CMV05_22200 PF13817 IS66 C-terminal element CMV05_22200 PF03050 Transposase IS66 family CMV05_22260 PF00580 UvrD/REP helicase N-terminal domain CMV05_22260 PF13361 UvrD-like helicase C-terminal domain CMV05_22310 PF13817 IS66 C-terminal element CMV05_22310 PF13007 Transposase C of IS166 homeodomain CMV05_22310 PF03050 Transposase IS66 family CMV05_22310 PF13005 zinc-finger binding domain of transposase IS66 CMV05_22325 PF01131 DNA topoisomerase CMV05_22325 PF01751 Toprim domain CMV05_22325 PF01396 Topoisomerase DNA binding C4 zinc finger CMV05_22355 PF00872 Transposase, Mutator family CMV05_22380 PF00270 DEAD/DEAH box helicase CMV05_22380 PF00271 Helicase conserved C-terminal domain CMV05_22380 PF00570 HRDC domain CMV05_22380 PF16124 RecQ zinc-binding CMV05_22380 PF09382 RQC domain CMV05_22425 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CMV05_22430 PF00872 Transposase, Mutator family CMV05_22445 PF13610 DDE domain CMV05_22470 PF13358 DDE superfamily endonuclease CMV05_22490 PF00872 Transposase, Mutator family CMV05_22500 PF01609 Transposase DDE domain CMV05_22520 PF00872 Transposase, Mutator family CMV05_22565 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CMV05_22565 PF00437 Type II/IV secretion system protein CMV05_22610 PF00437 Type II/IV secretion system protein CMV05_22630 PF04993 TfoX N-terminal domain CMV05_22630 PF04994 TfoX C-terminal domain CMV05_22640 PF00872 Transposase, Mutator family CMV05_22675 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CMV05_22675 PF13542 Helix-turn-helix domain of transposase family ISL3 CMV05_22675 PF01610 Transposase CMV05_22755 PF13005 zinc-finger binding domain of transposase IS66 CMV05_22755 PF03050 Transposase IS66 family CMV05_22755 PF13817 IS66 C-terminal element CMV05_22755 PF13007 Transposase C of IS166 homeodomain CMV05_22830 PF13007 Transposase C of IS166 homeodomain CMV05_22830 PF13005 zinc-finger binding domain of transposase IS66 CMV05_22830 PF13817 IS66 C-terminal element CMV05_22830 PF03050 Transposase IS66 family CMV05_22875 PF01555 DNA methylase CMV05_23015 PF03050 Transposase IS66 family CMV05_23015 PF13817 IS66 C-terminal element CMV05_23015 PF13007 Transposase C of IS166 homeodomain CMV05_23015 PF13005 zinc-finger binding domain of transposase IS66 CMV05_23045 PF00872 Transposase, Mutator family CMV05_23055 PF10410 DnaB-helicase binding domain of primase CMV05_23055 PF13662 Toprim domain CMV05_23055 PF01807 CHC2 zinc finger CMV05_23055 PF08275 DNA primase catalytic core, N-terminal domain CMV05_23055 PF08278 DNA primase DnaG DnaB-binding CMV05_23060 PF12323 Helix-turn-helix domain CMV05_23080 PF13426 PAS domain CMV05_23080 PF00990 Diguanylate cyclase, GGDEF domain CMV05_23080 PF00563 EAL domain CMV05_23140 PF00270 DEAD/DEAH box helicase CMV05_23140 PF00271 Helicase conserved C-terminal domain CMV05_23140 PF17191 RecG wedge domain CMV05_23165 PF00376 MerR family regulatory protein CMV05_23165 PF13614 AAA domain CMV05_23190 PF05175 Methyltransferase small domain CMV05_23275 PF13007 Transposase C of IS166 homeodomain CMV05_23275 PF03050 Transposase IS66 family CMV05_23275 PF13005 zinc-finger binding domain of transposase IS66 CMV05_23275 PF13817 IS66 C-terminal element CMV05_23310 PF13808 DDE_Tnp_1-associated CMV05_23310 PF01609 Transposase DDE domain CMV05_23485 PF13817 IS66 C-terminal element CMV05_23485 PF13005 zinc-finger binding domain of transposase IS66 CMV05_23485 PF03050 Transposase IS66 family CMV05_23485 PF13007 Transposase C of IS166 homeodomain