locus-tag class description VEA_000001 PF18267 Rubredoxin NAD+ reductase C-terminal domain VEA_000001 PF13806 Rieske-like [2Fe-2S] domain VEA_000001 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_000001 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VEA_000001 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VEA_000001 PF04324 BFD-like [2Fe-2S] binding domain VEA_000004 PF08361 MAATS-type transcriptional repressor, C-terminal region VEA_000004 PF00440 Bacterial regulatory proteins, tetR family VEA_000007 PF00072 Response regulator receiver domain VEA_000007 PF00211 Adenylate and Guanylate cyclase catalytic domain VEA_000011 PF03793 PASTA domain VEA_000011 PF00069 Protein kinase domain VEA_000015 PF00691 OmpA family VEA_000015 PF13677 Membrane MotB of proton-channel complex MotA/MotB VEA_000027 PF00004 ATPase family associated with various cellular activities (AAA) VEA_000027 PF07724 AAA domain (Cdc48 subfamily) VEA_000027 PF17871 AAA lid domain VEA_000027 PF10431 C-terminal, D2-small domain, of ClpB protein VEA_000029 PF16671 Actin cross-linking domain VEA_000029 PF04717 Type VI secretion system, phage-baseplate injector VEA_000032 PF12320 Type 5 capsule protein repressor C-terminal domain VEA_000032 PF00149 Calcineurin-like phosphoesterase VEA_000033 PF13476 AAA domain VEA_000034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000034 PF03466 LysR substrate binding domain VEA_000035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VEA_000036 PF03480 Bacterial extracellular solute-binding protein, family 7 VEA_000037 PF01266 FAD dependent oxidoreductase VEA_000039 PF04324 BFD-like [2Fe-2S] binding domain VEA_000039 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_000040 PF01042 Endoribonuclease L-PSP VEA_000042 PF08212 Lipocalin-like domain VEA_000044 PF03606 C4-dicarboxylate anaerobic carrier VEA_000045 PF00034 Cytochrome c VEA_000046 PF01212 Beta-eliminating lyase VEA_000048 PF07728 AAA domain (dynein-related subfamily) VEA_000048 PF17868 AAA lid domain VEA_000048 PF12592 Protein of unknown function (DUF3763) VEA_000049 PF05762 VWA domain containing CoxE-like protein VEA_000050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000050 PF03466 LysR substrate binding domain VEA_000051 PF09330 D-lactate dehydrogenase, membrane binding VEA_000051 PF01565 FAD binding domain VEA_000054 PF01168 Alanine racemase, N-terminal domain VEA_000054 PF00842 Alanine racemase, C-terminal domain VEA_000055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_000055 PF00672 HAMP domain VEA_000056 PF00128 Alpha amylase, catalytic domain VEA_000056 PF09154 Domain of unknown function (DUF1939) VEA_000065 PF00563 EAL domain VEA_000065 PF00990 Diguanylate cyclase, GGDEF domain VEA_000065 PF13426 PAS domain VEA_000067 PF01272 Transcription elongation factor, GreA/GreB, C-term VEA_000067 PF14760 Rnk N-terminus VEA_000068 PF04324 BFD-like [2Fe-2S] binding domain VEA_000068 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_000068 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VEA_000068 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VEA_000068 PF18267 Rubredoxin NAD+ reductase C-terminal domain VEA_000069 PF13806 Rieske-like [2Fe-2S] domain VEA_000071 PF01226 Formate/nitrite transporter VEA_000072 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VEA_000072 PF14824 Sirohaem biosynthesis protein central VEA_000072 PF10414 Sirohaem synthase dimerisation region VEA_000075 PF03605 Anaerobic c4-dicarboxylate membrane transporter VEA_000078 PF00593 TonB dependent receptor VEA_000078 PF07715 TonB-dependent Receptor Plug Domain VEA_000081 PF11756 Nitrous oxide-stimulated promoter VEA_000082 PF07690 Major Facilitator Superfamily VEA_000083 PF00085 Thioredoxin VEA_000084 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VEA_000084 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VEA_000088 PF01238 Phosphomannose isomerase type I VEA_000089 PF07690 Major Facilitator Superfamily VEA_000090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000090 PF05231 MASE1 VEA_000090 PF07730 Histidine kinase VEA_000091 PF00072 Response regulator receiver domain VEA_000091 PF00196 Bacterial regulatory proteins, luxR family VEA_000092 PF07690 Major Facilitator Superfamily VEA_000093 PF02634 FdhD/NarQ family VEA_000094 PF03466 LysR substrate binding domain VEA_000094 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000095 PF00384 Molybdopterin oxidoreductase VEA_000097 PF02567 Phenazine biosynthesis-like protein VEA_000098 PF01177 Asp/Glu/Hydantoin racemase VEA_000099 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VEA_000099 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_000102 PF04143 Sulphur transport VEA_000104 PF00873 AcrB/AcrD/AcrF family VEA_000105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_000107 PF13597 Anaerobic ribonucleoside-triphosphate reductase VEA_000107 PF03477 ATP cone domain VEA_000109 PF01554 MatE VEA_000110 PF12852 Cupin VEA_000110 PF12833 Helix-turn-helix domain VEA_000111 PF00155 Aminotransferase class I and II VEA_000112 PF18030 RimK PreATP-grasp domain VEA_000112 PF08443 RimK-like ATP-grasp domain VEA_000115 PF04076 Bacterial OB fold (BOF) protein VEA_000116 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VEA_000116 PF07685 CobB/CobQ-like glutamine amidotransferase domain VEA_000118 PF00528 Binding-protein-dependent transport system inner membrane component VEA_000119 PF00005 ABC transporter VEA_000119 PF03459 TOBE domain VEA_000121 PF00563 EAL domain VEA_000121 PF00360 Phytochrome region VEA_000121 PF01590 GAF domain VEA_000121 PF00990 Diguanylate cyclase, GGDEF domain VEA_000123 PF00990 Diguanylate cyclase, GGDEF domain VEA_000123 PF00072 Response regulator receiver domain VEA_000126 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VEA_000126 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VEA_000126 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VEA_000127 PF02233 NAD(P) transhydrogenase beta subunit VEA_000129 PF00072 Response regulator receiver domain VEA_000129 PF00486 Transcriptional regulatory protein, C terminal VEA_000132 PF03701 Uncharacterised protein family (UPF0181) VEA_000133 PF00582 Universal stress protein family VEA_000135 PF03466 LysR substrate binding domain VEA_000135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000152 PF01253 Translation initiation factor SUI1 VEA_000154 PF01820 D-ala D-ala ligase N-terminus VEA_000154 PF07478 D-ala D-ala ligase C-terminus VEA_000155 PF05036 Sporulation related domain VEA_000156 PF13380 CoA binding domain VEA_000156 PF13607 Succinyl-CoA ligase like flavodoxin domain VEA_000156 PF00583 Acetyltransferase (GNAT) family VEA_000157 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000157 PF03466 LysR substrate binding domain VEA_000158 PF00593 TonB dependent receptor VEA_000158 PF07715 TonB-dependent Receptor Plug Domain VEA_000160 PF16363 GDP-mannose 4,6 dehydratase VEA_000161 PF13426 PAS domain VEA_000161 PF05231 MASE1 VEA_000161 PF00990 Diguanylate cyclase, GGDEF domain VEA_000161 PF00563 EAL domain VEA_000161 PF08448 PAS fold VEA_000161 PF08447 PAS fold VEA_000162 PF03746 LamB/YcsF family VEA_000163 PF02682 Carboxyltransferase domain, subdomain C and D VEA_000164 PF02626 Carboxyltransferase domain, subdomain A and B VEA_000167 PF00005 ABC transporter VEA_000168 PF13472 GDSL-like Lipase/Acylhydrolase family VEA_000169 PF07055 Enoyl reductase FAD binding domain VEA_000169 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VEA_000169 PF12241 Trans-2-enoyl-CoA reductase catalytic region VEA_000170 PF00990 Diguanylate cyclase, GGDEF domain VEA_000170 PF00498 FHA domain VEA_000170 PF00563 EAL domain VEA_000172 PF00226 DnaJ domain VEA_000172 PF00684 DnaJ central domain VEA_000172 PF01556 DnaJ C terminal domain VEA_000178 PF12793 Sugar transport-related sRNA regulator N-term VEA_000178 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_000180 PF03061 Thioesterase superfamily VEA_000183 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VEA_000184 PF12262 Bacterial virulence factor lipase N-terminal VEA_000188 PF03741 Integral membrane protein TerC family VEA_000189 PF02872 5'-nucleotidase, C-terminal domain VEA_000189 PF00149 Calcineurin-like phosphoesterase VEA_000190 PF11398 Protein of unknown function (DUF2813) VEA_000191 PF06496 Protein of unknown function (DUF1097) VEA_000192 PF03466 LysR substrate binding domain VEA_000192 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000193 PF01226 Formate/nitrite transporter VEA_000194 PF04264 YceI-like domain VEA_000195 PF01292 Prokaryotic cytochrome b561 VEA_000198 PF00563 EAL domain VEA_000198 PF12792 CSS motif domain associated with EAL VEA_000199 PF00270 DEAD/DEAH box helicase VEA_000199 PF00271 Helicase conserved C-terminal domain VEA_000200 PF04336 Acyl carrier protein phosphodiesterase VEA_000202 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_000202 PF00672 HAMP domain VEA_000202 PF12729 Four helix bundle sensory module for signal transduction VEA_000204 PF13419 Haloacid dehalogenase-like hydrolase VEA_000207 PF00294 pfkB family carbohydrate kinase VEA_000208 PF01268 Formate--tetrahydrofolate ligase VEA_000209 PF00483 Nucleotidyl transferase VEA_000210 PF06483 Chitinase C VEA_000210 PF00704 Glycosyl hydrolases family 18 VEA_000211 PF06719 AraC-type transcriptional regulator N-terminus VEA_000211 PF12833 Helix-turn-helix domain VEA_000212 PF00465 Iron-containing alcohol dehydrogenase VEA_000214 PF00005 ABC transporter VEA_000215 PF00528 Binding-protein-dependent transport system inner membrane component VEA_000216 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_000217 PF00528 Binding-protein-dependent transport system inner membrane component VEA_000218 PF00990 Diguanylate cyclase, GGDEF domain VEA_000218 PF00563 EAL domain VEA_000218 PF00989 PAS fold VEA_000218 PF01590 GAF domain VEA_000221 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VEA_000221 PF00356 Bacterial regulatory proteins, lacI family VEA_000222 PF00381 PTS HPr component phosphorylation site VEA_000222 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VEA_000223 PF00294 pfkB family carbohydrate kinase VEA_000224 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VEA_000224 PF02378 Phosphotransferase system, EIIC VEA_000226 PF00873 AcrB/AcrD/AcrF family VEA_000228 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_000230 PF08669 Glycine cleavage T-protein C-terminal barrel domain VEA_000230 PF01571 Aminomethyltransferase folate-binding domain VEA_000232 PF00464 Serine hydroxymethyltransferase VEA_000233 PF01597 Glycine cleavage H-protein VEA_000234 PF02347 Glycine cleavage system P-protein VEA_000235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VEA_000236 PF02627 Carboxymuconolactone decarboxylase family VEA_000237 PF12833 Helix-turn-helix domain VEA_000241 PF11490 DNA polymerase III polC-type N-terminus II VEA_000241 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VEA_000241 PF14579 Helix-hairpin-helix motif VEA_000241 PF02811 PHP domain VEA_000241 PF00929 Exonuclease VEA_000241 PF07733 Bacterial DNA polymerase III alpha NTPase domain VEA_000242 PF00664 ABC transporter transmembrane region VEA_000242 PF00005 ABC transporter VEA_000246 PF02253 Phospholipase A1 VEA_000248 PF09278 MerR, DNA binding VEA_000248 PF00376 MerR family regulatory protein VEA_000249 PF01327 Polypeptide deformylase VEA_000256 PF01769 Divalent cation transporter VEA_000256 PF03448 MgtE intracellular N domain VEA_000256 PF00571 CBS domain VEA_000260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VEA_000261 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VEA_000263 PF01757 Acyltransferase family VEA_000266 PF00141 Peroxidase VEA_000267 PF13187 4Fe-4S dicluster domain VEA_000267 PF01645 Conserved region in glutamate synthase VEA_000269 PF00171 Aldehyde dehydrogenase family VEA_000272 PF00892 EamA-like transporter family VEA_000273 PF00893 Small Multidrug Resistance protein VEA_000274 PF04151 Bacterial pre-peptidase C-terminal domain VEA_000274 PF01447 Thermolysin metallopeptidase, catalytic domain VEA_000274 PF03413 Peptidase propeptide and YPEB domain VEA_000274 PF07504 Fungalysin/Thermolysin Propeptide Motif VEA_000274 PF02868 Thermolysin metallopeptidase, alpha-helical domain VEA_000278 PF00892 EamA-like transporter family VEA_000280 PF08334 Type II secretion system (T2SS), protein G VEA_000280 PF07963 Prokaryotic N-terminal methylation motif VEA_000281 PF00072 Response regulator receiver domain VEA_000281 PF01584 CheW-like domain VEA_000282 PF00196 Bacterial regulatory proteins, luxR family VEA_000282 PF00072 Response regulator receiver domain VEA_000284 PF00990 Diguanylate cyclase, GGDEF domain VEA_000284 PF08448 PAS fold VEA_000286 PF13188 PAS domain VEA_000286 PF03707 Bacterial signalling protein N terminal repeat VEA_000286 PF00990 Diguanylate cyclase, GGDEF domain VEA_000286 PF00563 EAL domain VEA_000287 PF01926 50S ribosome-binding GTPase VEA_000288 PF00155 Aminotransferase class I and II VEA_000289 PF00072 Response regulator receiver domain VEA_000289 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000291 PF00814 Glycoprotease family VEA_000291 PF00583 Acetyltransferase (GNAT) family VEA_000293 PF03606 C4-dicarboxylate anaerobic carrier VEA_000294 PF04011 LemA family VEA_000295 PF01435 Peptidase family M48 VEA_000298 PF08774 VRR-NUC domain VEA_000298 PF18081 Fanconi anemia-associated nuclease SAP domain VEA_000300 PF04076 Bacterial OB fold (BOF) protein VEA_000301 PF00781 Diacylglycerol kinase catalytic domain VEA_000302 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000302 PF03466 LysR substrate binding domain VEA_000303 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VEA_000303 PF01872 RibD C-terminal domain VEA_000306 PF00092 von Willebrand factor type A domain VEA_000309 PF17863 AAA lid domain VEA_000309 PF07726 ATPase family associated with various cellular activities (AAA) VEA_000310 PF13186 Iron-sulfur cluster-binding domain VEA_000310 PF04055 Radical SAM superfamily VEA_000311 PF16385 Domain of unknown function VEA_000311 PF00884 Sulfatase VEA_000312 PF03466 LysR substrate binding domain VEA_000312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000313 PF00884 Sulfatase VEA_000314 PF00072 Response regulator receiver domain VEA_000314 PF00486 Transcriptional regulatory protein, C terminal VEA_000317 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000317 PF00072 Response regulator receiver domain VEA_000317 PF00672 HAMP domain VEA_000317 PF01627 Hpt domain VEA_000317 PF00512 His Kinase A (phospho-acceptor) domain VEA_000318 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VEA_000319 PF02142 MGS-like domain VEA_000320 PF12462 DNA helicase IV / RNA helicase N terminal VEA_000320 PF13361 UvrD-like helicase C-terminal domain VEA_000320 PF00580 UvrD/REP helicase N-terminal domain VEA_000321 PF12805 FUSC-like inner membrane protein yccS VEA_000326 PF00593 TonB dependent receptor VEA_000326 PF07715 TonB-dependent Receptor Plug Domain VEA_000327 PF12833 Helix-turn-helix domain VEA_000328 PF13411 MerR HTH family regulatory protein VEA_000329 PF00005 ABC transporter VEA_000330 PF01032 FecCD transport family VEA_000331 PF01032 FecCD transport family VEA_000332 PF01497 Periplasmic binding protein VEA_000334 PF01048 Phosphorylase superfamily VEA_000335 PF04973 Nicotinamide mononucleotide transporter VEA_000337 PF00356 Bacterial regulatory proteins, lacI family VEA_000338 PF00294 pfkB family carbohydrate kinase VEA_000339 PF13407 Periplasmic binding protein domain VEA_000340 PF02653 Branched-chain amino acid transport system / permease component VEA_000341 PF00005 ABC transporter VEA_000342 PF05025 RbsD / FucU transport protein family VEA_000343 PF00563 EAL domain VEA_000343 PF00990 Diguanylate cyclase, GGDEF domain VEA_000349 PF04116 Fatty acid hydroxylase superfamily VEA_000352 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VEA_000352 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain VEA_000354 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000354 PF00512 His Kinase A (phospho-acceptor) domain VEA_000354 PF00072 Response regulator receiver domain VEA_000354 PF09308 LuxQ, periplasmic VEA_000355 PF03150 Di-haem cytochrome c peroxidase VEA_000355 PF00034 Cytochrome c VEA_000356 PF00563 EAL domain VEA_000356 PF00990 Diguanylate cyclase, GGDEF domain VEA_000356 PF13188 PAS domain VEA_000356 PF03707 Bacterial signalling protein N terminal repeat VEA_000358 PF16200 C-terminal region of band_7 VEA_000358 PF01145 SPFH domain / Band 7 family VEA_000360 PF00881 Nitroreductase family VEA_000361 PF00005 ABC transporter VEA_000361 PF00571 CBS domain VEA_000362 PF00528 Binding-protein-dependent transport system inner membrane component VEA_000363 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VEA_000364 PF05199 GMC oxidoreductase VEA_000364 PF00732 GMC oxidoreductase VEA_000365 PF00171 Aldehyde dehydrogenase family VEA_000366 PF13977 BetI-type transcriptional repressor, C-terminal VEA_000366 PF00440 Bacterial regulatory proteins, tetR family VEA_000368 PF00072 Response regulator receiver domain VEA_000368 PF00990 Diguanylate cyclase, GGDEF domain VEA_000370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VEA_000370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VEA_000372 PF00378 Enoyl-CoA hydratase/isomerase VEA_000373 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VEA_000373 PF02770 Acyl-CoA dehydrogenase, middle domain VEA_000373 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VEA_000374 PF00171 Aldehyde dehydrogenase family VEA_000375 PF02803 Thiolase, C-terminal domain VEA_000375 PF00108 Thiolase, N-terminal domain VEA_000376 PF00376 MerR family regulatory protein VEA_000376 PF09278 MerR, DNA binding VEA_000377 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VEA_000377 PF02770 Acyl-CoA dehydrogenase, middle domain VEA_000377 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VEA_000378 PF01039 Carboxyl transferase domain VEA_000379 PF00378 Enoyl-CoA hydratase/isomerase VEA_000380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VEA_000380 PF02785 Biotin carboxylase C-terminal domain VEA_000380 PF00289 Biotin carboxylase, N-terminal domain VEA_000381 PF00682 HMGL-like VEA_000382 PF00512 His Kinase A (phospho-acceptor) domain VEA_000382 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000382 PF00672 HAMP domain VEA_000382 PF00072 Response regulator receiver domain VEA_000382 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VEA_000382 PF01627 Hpt domain VEA_000385 PF14602 Hexapeptide repeat of succinyl-transferase VEA_000385 PF12464 Maltose acetyltransferase VEA_000386 PF00392 Bacterial regulatory proteins, gntR family VEA_000386 PF00155 Aminotransferase class I and II VEA_000387 PF01654 Cytochrome bd terminal oxidase subunit I VEA_000388 PF02322 Cytochrome bd terminal oxidase subunit II VEA_000390 PF02567 Phenazine biosynthesis-like protein VEA_000391 PF13419 Haloacid dehalogenase-like hydrolase VEA_000392 PF03466 LysR substrate binding domain VEA_000392 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000393 PF03306 Alpha-acetolactate decarboxylase VEA_000394 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VEA_000394 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VEA_000394 PF00205 Thiamine pyrophosphate enzyme, central domain VEA_000395 PF00106 short chain dehydrogenase VEA_000396 PF02028 BCCT, betaine/carnitine/choline family transporter VEA_000398 PF14535 AMP-binding enzyme C-terminal domain VEA_000398 PF00501 AMP-binding enzyme VEA_000399 PF00005 ABC transporter VEA_000404 PF12399 Branched-chain amino acid ATP-binding cassette transporter VEA_000404 PF00005 ABC transporter VEA_000407 PF01012 Electron transfer flavoprotein domain VEA_000408 PF01012 Electron transfer flavoprotein domain VEA_000408 PF00766 Electron transfer flavoprotein FAD-binding domain VEA_000409 PF13193 AMP-binding enzyme C-terminal domain VEA_000409 PF00501 AMP-binding enzyme VEA_000410 PF00367 phosphotransferase system, EIIB VEA_000410 PF02378 Phosphotransferase system, EIIC VEA_000411 PF02056 Family 4 glycosyl hydrolase VEA_000411 PF11975 Family 4 glycosyl hydrolase C-terminal domain VEA_000412 PF00392 Bacterial regulatory proteins, gntR family VEA_000412 PF07702 UTRA domain VEA_000413 PF03334 Na+/H+ antiporter subunit VEA_000414 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VEA_000418 PF00361 Proton-conducting membrane transporter VEA_000418 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter VEA_000418 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VEA_000418 PF13244 Domain of unknown function (DUF4040) VEA_000419 PF00582 Universal stress protein family VEA_000420 PF00106 short chain dehydrogenase VEA_000421 PF03466 LysR substrate binding domain VEA_000421 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000423 PF07690 Major Facilitator Superfamily VEA_000424 PF02129 X-Pro dipeptidyl-peptidase (S15 family) VEA_000427 PF00182 Chitinase class I VEA_000436 PF01037 Lrp/AsnC ligand binding domain VEA_000443 PF00069 Protein kinase domain VEA_000448 PF04717 Type VI secretion system, phage-baseplate injector VEA_000449 PF05638 Type VI secretion system effector, Hcp VEA_000450 PF00004 ATPase family associated with various cellular activities (AAA) VEA_000450 PF10431 C-terminal, D2-small domain, of ClpB protein VEA_000450 PF17871 AAA lid domain VEA_000450 PF07724 AAA domain (Cdc48 subfamily) VEA_000451 PF00158 Sigma-54 interaction domain VEA_000451 PF00072 Response regulator receiver domain VEA_000451 PF02954 Bacterial regulatory protein, Fis family VEA_000452 PF00691 OmpA family VEA_000457 PF01476 LysM domain VEA_000457 PF01551 Peptidase family M23 VEA_000457 PF08525 Opacity-associated protein A N-terminal motif VEA_000458 PF03466 LysR substrate binding domain VEA_000458 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000459 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VEA_000459 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VEA_000459 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VEA_000460 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VEA_000461 PF00132 Bacterial transferase hexapeptide (six repeats) VEA_000462 PF00144 Beta-lactamase VEA_000463 PF00392 Bacterial regulatory proteins, gntR family VEA_000469 PF01565 FAD binding domain VEA_000469 PF08031 Berberine and berberine like VEA_000470 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VEA_000471 PF00478 IMP dehydrogenase / GMP reductase domain VEA_000472 PF01256 Carbohydrate kinase VEA_000472 PF03853 YjeF-related protein N-terminus VEA_000474 PF00072 Response regulator receiver domain VEA_000475 PF00248 Aldo/keto reductase family VEA_000478 PF00654 Voltage gated chloride channel VEA_000480 PF01566 Natural resistance-associated macrophage protein VEA_000481 PF01227 GTP cyclohydrolase I VEA_000482 PF03454 MoeA C-terminal region (domain IV) VEA_000482 PF00994 Probable molybdopterin binding domain VEA_000482 PF03453 MoeA N-terminal region (domain I and II) VEA_000483 PF00899 ThiF family VEA_000488 PF00581 Rhodanese-like domain VEA_000489 PF00563 EAL domain VEA_000489 PF00990 Diguanylate cyclase, GGDEF domain VEA_000489 PF03707 Bacterial signalling protein N terminal repeat VEA_000494 PF00923 Transaldolase/Fructose-6-phosphate aldolase VEA_000495 PF02780 Transketolase, C-terminal domain VEA_000495 PF02779 Transketolase, pyrimidine binding domain VEA_000495 PF00456 Transketolase, thiamine diphosphate binding domain VEA_000496 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_000496 PF08447 PAS fold VEA_000497 PF07690 Major Facilitator Superfamily VEA_000498 PF00793 DAHP synthetase I family VEA_000499 PF01389 OmpA-like transmembrane domain VEA_000499 PF00691 OmpA family VEA_000500 PF13419 Haloacid dehalogenase-like hydrolase VEA_000501 PF00472 RF-1 domain VEA_000502 PF00672 HAMP domain VEA_000502 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_000502 PF17200 Single Cache domain 2 VEA_000503 PF00873 AcrB/AcrD/AcrF family VEA_000504 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_000505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VEA_000506 PF01546 Peptidase family M20/M25/M40 VEA_000506 PF07687 Peptidase dimerisation domain VEA_000509 PF00072 Response regulator receiver domain VEA_000509 PF00196 Bacterial regulatory proteins, luxR family VEA_000510 PF00672 HAMP domain VEA_000510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000510 PF07730 Histidine kinase VEA_000510 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VEA_000511 PF13187 4Fe-4S dicluster domain VEA_000511 PF12838 4Fe-4S dicluster domain VEA_000513 PF00384 Molybdopterin oxidoreductase VEA_000513 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VEA_000513 PF01568 Molydopterin dinucleotide binding domain VEA_000514 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VEA_000515 PF03264 NapC/NirT cytochrome c family, N-terminal region VEA_000517 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VEA_000519 PF00108 Thiolase, N-terminal domain VEA_000519 PF02803 Thiolase, C-terminal domain VEA_000520 PF00106 short chain dehydrogenase VEA_000521 PF01810 LysE type translocator VEA_000523 PF07549 SecD/SecF GG Motif VEA_000523 PF02355 Protein export membrane protein VEA_000524 PF02355 Protein export membrane protein VEA_000524 PF13721 SecD export protein N-terminal TM region VEA_000524 PF07549 SecD/SecF GG Motif VEA_000530 PF01037 Lrp/AsnC ligand binding domain VEA_000534 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_000534 PF00529 HlyD membrane-fusion protein of T1SS VEA_000536 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000536 PF09308 LuxQ, periplasmic VEA_000536 PF00072 Response regulator receiver domain VEA_000536 PF00512 His Kinase A (phospho-acceptor) domain VEA_000537 PF13407 Periplasmic binding protein domain VEA_000538 PF01541 GIY-YIG catalytic domain VEA_000539 PF04337 Protein of unknown function, DUF480 VEA_000542 PF04363 Protein of unknown function (DUF496) VEA_000543 PF01554 MatE VEA_000544 PF01627 Hpt domain VEA_000544 PF00072 Response regulator receiver domain VEA_000544 PF00512 His Kinase A (phospho-acceptor) domain VEA_000544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000544 PF00672 HAMP domain VEA_000544 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VEA_000548 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VEA_000548 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VEA_000551 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000551 PF03466 LysR substrate binding domain VEA_000553 PF13520 Amino acid permease VEA_000554 PF00155 Aminotransferase class I and II VEA_000554 PF00392 Bacterial regulatory proteins, gntR family VEA_000556 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000556 PF00512 His Kinase A (phospho-acceptor) domain VEA_000556 PF16527 Two-component sensor protein CpxA, periplasmic domain VEA_000556 PF00672 HAMP domain VEA_000557 PF00072 Response regulator receiver domain VEA_000557 PF00486 Transcriptional regulatory protein, C terminal VEA_000563 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_000563 PF00529 HlyD membrane-fusion protein of T1SS VEA_000564 PF03109 ABC1 family VEA_000565 PF00571 CBS domain VEA_000565 PF01769 Divalent cation transporter VEA_000565 PF03448 MgtE intracellular N domain VEA_000566 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VEA_000567 PF07969 Amidohydrolase family VEA_000568 PF01966 HD domain VEA_000570 PF07690 Major Facilitator Superfamily VEA_000572 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VEA_000573 PF00255 Glutathione peroxidase VEA_000576 PF01323 DSBA-like thioredoxin domain VEA_000579 PF00486 Transcriptional regulatory protein, C terminal VEA_000579 PF00072 Response regulator receiver domain VEA_000580 PF16527 Two-component sensor protein CpxA, periplasmic domain VEA_000580 PF00672 HAMP domain VEA_000580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000580 PF00512 His Kinase A (phospho-acceptor) domain VEA_000582 PF01219 Prokaryotic diacylglycerol kinase VEA_000583 PF00884 Sulfatase VEA_000583 PF08019 Phosphoethanolamine transferase EptA/EptB VEA_000584 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VEA_000588 PF01734 Patatin-like phospholipase VEA_000589 PF02678 Pirin VEA_000589 PF05726 Pirin C-terminal cupin domain VEA_000590 PF00313 'Cold-shock' DNA-binding domain VEA_000592 PF00962 Adenosine/AMP deaminase VEA_000593 PF08534 Redoxin VEA_000593 PF00462 Glutaredoxin VEA_000595 PF07943 Penicillin-binding protein 5, C-terminal domain VEA_000595 PF00768 D-alanyl-D-alanine carboxypeptidase VEA_000596 PF02798 Glutathione S-transferase, N-terminal domain VEA_000597 PF00251 Glycosyl hydrolases family 32 N-terminal domain VEA_000597 PF08244 Glycosyl hydrolases family 32 C terminal VEA_000598 PF00294 pfkB family carbohydrate kinase VEA_000599 PF02378 Phosphotransferase system, EIIC VEA_000599 PF00367 phosphotransferase system, EIIB VEA_000600 PF00356 Bacterial regulatory proteins, lacI family VEA_000601 PF02264 LamB porin VEA_000601 PF11471 Maltoporin periplasmic N-terminal extension VEA_000611 PF01497 Periplasmic binding protein VEA_000611 PF12833 Helix-turn-helix domain VEA_000612 PF00155 Aminotransferase class I and II VEA_000617 PF00535 Glycosyl transferase family 2 VEA_000619 PF00271 Helicase conserved C-terminal domain VEA_000619 PF00270 DEAD/DEAH box helicase VEA_000621 PF03466 LysR substrate binding domain VEA_000621 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000622 PF03466 LysR substrate binding domain VEA_000622 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000624 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VEA_000625 PF08240 Alcohol dehydrogenase GroES-like domain VEA_000625 PF00107 Zinc-binding dehydrogenase VEA_000628 PF12833 Helix-turn-helix domain VEA_000629 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VEA_000630 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VEA_000631 PF00392 Bacterial regulatory proteins, gntR family VEA_000631 PF00155 Aminotransferase class I and II VEA_000632 PF01321 Creatinase/Prolidase N-terminal domain VEA_000632 PF00557 Metallopeptidase family M24 VEA_000633 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VEA_000634 PF03480 Bacterial extracellular solute-binding protein, family 7 VEA_000635 PF01037 Lrp/AsnC ligand binding domain VEA_000636 PF00171 Aldehyde dehydrogenase family VEA_000637 PF00202 Aminotransferase class-III VEA_000638 PF00291 Pyridoxal-phosphate dependent enzyme VEA_000639 PF02423 Ornithine cyclodeaminase/mu-crystallin family VEA_000641 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VEA_000642 PF01810 LysE type translocator VEA_000644 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000644 PF03466 LysR substrate binding domain VEA_000646 PF17763 Glutaminase/Asparaginase C-terminal domain VEA_000646 PF00710 Asparaginase, N-terminal VEA_000647 PF03618 Kinase/pyrophosphorylase VEA_000648 PF00391 PEP-utilising enzyme, mobile domain VEA_000648 PF02896 PEP-utilising enzyme, TIM barrel domain VEA_000648 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VEA_000650 PF00072 Response regulator receiver domain VEA_000650 PF00196 Bacterial regulatory proteins, luxR family VEA_000651 PF00579 tRNA synthetases class I (W and Y) VEA_000653 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000653 PF03466 LysR substrate binding domain VEA_000654 PF13533 Biotin-lipoyl like VEA_000655 PF00873 AcrB/AcrD/AcrF family VEA_000658 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VEA_000658 PF02837 Glycosyl hydrolases family 2, sugar binding domain VEA_000658 PF00703 Glycosyl hydrolases family 2 VEA_000658 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VEA_000659 PF02028 BCCT, betaine/carnitine/choline family transporter VEA_000660 PF00392 Bacterial regulatory proteins, gntR family VEA_000660 PF07702 UTRA domain VEA_000661 PF01547 Bacterial extracellular solute-binding protein VEA_000665 PF08402 TOBE domain VEA_000665 PF00005 ABC transporter VEA_000668 PF00873 AcrB/AcrD/AcrF family VEA_000670 PF13091 PLD-like domain VEA_000675 PF09278 MerR, DNA binding VEA_000675 PF00376 MerR family regulatory protein VEA_000677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000677 PF03466 LysR substrate binding domain VEA_000679 PF13378 Enolase C-terminal domain-like VEA_000679 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VEA_000680 PF14492 Elongation Factor G, domain II VEA_000680 PF00009 Elongation factor Tu GTP binding domain VEA_000680 PF03144 Elongation factor Tu domain 2 VEA_000680 PF03764 Elongation factor G, domain IV VEA_000680 PF00679 Elongation factor G C-terminus VEA_000685 PF02001 Protein of unknown function DUF134 VEA_000686 PF00528 Binding-protein-dependent transport system inner membrane component VEA_000687 PF00005 ABC transporter VEA_000687 PF00571 CBS domain VEA_000688 PF04170 NlpE N-terminal domain VEA_000689 PF06629 MltA-interacting protein MipA VEA_000692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000692 PF03466 LysR substrate binding domain VEA_000697 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VEA_000697 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VEA_000699 PF00857 Isochorismatase family VEA_000701 PF08220 DeoR-like helix-turn-helix domain VEA_000701 PF00455 DeoR C terminal sensor domain VEA_000702 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VEA_000703 PF01641 SelR domain VEA_000703 PF01625 Peptide methionine sulfoxide reductase VEA_000706 PF07971 Glycosyl hydrolase family 92 VEA_000706 PF17678 Glycosyl hydrolase family 92 N-terminal domain VEA_000707 PF07971 Glycosyl hydrolase family 92 VEA_000707 PF17678 Glycosyl hydrolase family 92 N-terminal domain VEA_000709 PF17678 Glycosyl hydrolase family 92 N-terminal domain VEA_000709 PF07971 Glycosyl hydrolase family 92 VEA_000710 PF07971 Glycosyl hydrolase family 92 VEA_000710 PF17678 Glycosyl hydrolase family 92 N-terminal domain VEA_000711 PF03060 Nitronate monooxygenase VEA_000712 PF13520 Amino acid permease VEA_000713 PF05985 Ethanolamine ammonia-lyase light chain (EutC) VEA_000714 PF06751 Ethanolamine ammonia lyase large subunit (EutB) VEA_000715 PF12833 Helix-turn-helix domain VEA_000716 PF08359 YsiA-like protein, C-terminal region VEA_000716 PF00440 Bacterial regulatory proteins, tetR family VEA_000722 PF00118 TCP-1/cpn60 chaperonin family VEA_000723 PF00166 Chaperonin 10 Kd subunit VEA_000724 PF00581 Rhodanese-like domain VEA_000726 PF01070 FMN-dependent dehydrogenase VEA_000730 PF00669 Bacterial flagellin N-terminal helical region VEA_000731 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_000731 PF00460 Flagella basal body rod protein VEA_000732 PF10135 Rod binding protein VEA_000732 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VEA_000733 PF02119 Flagellar P-ring protein VEA_000734 PF02107 Flagellar L-ring protein VEA_000735 PF00460 Flagella basal body rod protein VEA_000735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_000736 PF00460 Flagella basal body rod protein VEA_000736 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_000737 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_000737 PF00460 Flagella basal body rod protein VEA_000737 PF07559 Flagellar basal body protein FlaE VEA_000738 PF03963 Flagellar hook capping protein - N-terminal region VEA_000738 PF13861 FlgD Tudor-like domain VEA_000738 PF13860 FlgD Ig-like domain VEA_000739 PF00460 Flagella basal body rod protein VEA_000739 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_000740 PF00460 Flagella basal body rod protein VEA_000744 PF01464 Transglycosylase SLT domain VEA_000745 PF08264 Anticodon-binding domain of tRNA VEA_000745 PF00133 tRNA synthetases class I (I, L, M and V) VEA_000749 PF03313 Serine dehydratase alpha chain VEA_000749 PF03315 Serine dehydratase beta chain VEA_000750 PF00854 POT family VEA_000752 PF03466 LysR substrate binding domain VEA_000752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000754 PF03466 LysR substrate binding domain VEA_000754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000755 PF00691 OmpA family VEA_000755 PF01389 OmpA-like transmembrane domain VEA_000756 PF18027 Cytosolic carboxypeptidase N-terminal domain VEA_000756 PF00246 Zinc carboxypeptidase VEA_000757 PF01266 FAD dependent oxidoreductase VEA_000760 PF04393 Protein of unknown function (DUF535) VEA_000763 PF00392 Bacterial regulatory proteins, gntR family VEA_000763 PF07702 UTRA domain VEA_000764 PF00528 Binding-protein-dependent transport system inner membrane component VEA_000765 PF00005 ABC transporter VEA_000767 PF00266 Aminotransferase class-V VEA_000769 PF13419 Haloacid dehalogenase-like hydrolase VEA_000770 PF00356 Bacterial regulatory proteins, lacI family VEA_000771 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VEA_000773 PF03611 PTS system sugar-specific permease component VEA_000776 PF00657 GDSL-like Lipase/Acylhydrolase VEA_000778 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VEA_000779 PF00194 Eukaryotic-type carbonic anhydrase VEA_000780 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VEA_000783 PF13419 Haloacid dehalogenase-like hydrolase VEA_000784 PF03466 LysR substrate binding domain VEA_000784 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000791 PF14602 Hexapeptide repeat of succinyl-transferase VEA_000791 PF12464 Maltose acetyltransferase VEA_000792 PF02566 OsmC-like protein VEA_000793 PF01625 Peptide methionine sulfoxide reductase VEA_000793 PF01641 SelR domain VEA_000795 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VEA_000796 PF00875 DNA photolyase VEA_000796 PF03441 FAD binding domain of DNA photolyase VEA_000797 PF00990 Diguanylate cyclase, GGDEF domain VEA_000800 PF00990 Diguanylate cyclase, GGDEF domain VEA_000800 PF05230 MASE2 domain VEA_000803 PF01773 Na+ dependent nucleoside transporter N-terminus VEA_000803 PF07670 Nucleoside recognition VEA_000803 PF07662 Na+ dependent nucleoside transporter C-terminus VEA_000805 PF01212 Beta-eliminating lyase VEA_000806 PF03116 NQR2, RnfD, RnfE family VEA_000807 PF01654 Cytochrome bd terminal oxidase subunit I VEA_000808 PF02322 Cytochrome bd terminal oxidase subunit II VEA_000810 PF01266 FAD dependent oxidoreductase VEA_000813 PF05525 Branched-chain amino acid transport protein VEA_000814 PF00990 Diguanylate cyclase, GGDEF domain VEA_000815 PF02954 Bacterial regulatory protein, Fis family VEA_000815 PF00158 Sigma-54 interaction domain VEA_000815 PF00072 Response regulator receiver domain VEA_000816 PF00512 His Kinase A (phospho-acceptor) domain VEA_000816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000818 PF00232 Glycosyl hydrolase family 1 VEA_000824 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000824 PF03466 LysR substrate binding domain VEA_000825 PF08443 RimK-like ATP-grasp domain VEA_000825 PF18030 RimK PreATP-grasp domain VEA_000826 PF08443 RimK-like ATP-grasp domain VEA_000826 PF18030 RimK PreATP-grasp domain VEA_000827 PF00753 Metallo-beta-lactamase superfamily VEA_000828 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VEA_000828 PF17944 Arginine decarboxylase C-terminal helical extension VEA_000828 PF17810 Arginine decarboxylase helical bundle domain VEA_000829 PF00491 Arginase family VEA_000830 PF07690 Major Facilitator Superfamily VEA_000831 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VEA_000831 PF00326 Prolyl oligopeptidase family VEA_000834 PF00950 ABC 3 transport family VEA_000835 PF00005 ABC transporter VEA_000836 PF01297 Zinc-uptake complex component A periplasmic VEA_000845 PF02472 Biopolymer transport protein ExbD/TolR VEA_000846 PF01618 MotA/TolQ/ExbB proton channel family VEA_000847 PF01618 MotA/TolQ/ExbB proton channel family VEA_000849 PF07715 TonB-dependent Receptor Plug Domain VEA_000849 PF00593 TonB dependent receptor VEA_000850 PF00512 His Kinase A (phospho-acceptor) domain VEA_000850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000850 PF00672 HAMP domain VEA_000851 PF00486 Transcriptional regulatory protein, C terminal VEA_000851 PF00072 Response regulator receiver domain VEA_000853 PF03009 Glycerophosphoryl diester phosphodiesterase family VEA_000855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VEA_000855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VEA_000856 PF10928 Protein of unknown function (DUF2810) VEA_000860 PF04013 Putative SAM-dependent RNA methyltransferase VEA_000861 PF01523 Putative modulator of DNA gyrase VEA_000862 PF01523 Putative modulator of DNA gyrase VEA_000863 PF08543 Phosphomethylpyrimidine kinase VEA_000864 PF00005 ABC transporter VEA_000865 PF00528 Binding-protein-dependent transport system inner membrane component VEA_000866 PF09084 NMT1/THI5 like VEA_000867 PF03070 TENA/THI-4/PQQC family VEA_000868 PF02110 Hydroxyethylthiazole kinase family VEA_000869 PF02581 Thiamine monophosphate synthase VEA_000871 PF18364 Molybdopterin oxidoreductase N-terminal domain VEA_000871 PF00384 Molybdopterin oxidoreductase VEA_000871 PF01568 Molydopterin dinucleotide binding domain VEA_000872 PF03264 NapC/NirT cytochrome c family, N-terminal region VEA_000873 PF13302 Acetyltransferase (GNAT) domain VEA_000877 PF00583 Acetyltransferase (GNAT) family VEA_000881 PF00155 Aminotransferase class I and II VEA_000881 PF00392 Bacterial regulatory proteins, gntR family VEA_000882 PF02595 Glycerate kinase family VEA_000883 PF02447 GntP family permease VEA_000884 PF05651 Putative sugar diacid recognition VEA_000884 PF17853 GGDEF-like domain VEA_000884 PF13556 PucR C-terminal helix-turn-helix domain VEA_000889 PF13419 Haloacid dehalogenase-like hydrolase VEA_000892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000892 PF03466 LysR substrate binding domain VEA_000894 PF03466 LysR substrate binding domain VEA_000894 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VEA_000896 PF01661 Macro domain VEA_000897 PF01204 Trehalase VEA_000899 PF12706 Beta-lactamase superfamily domain VEA_000901 PF07690 Major Facilitator Superfamily VEA_000902 PF13533 Biotin-lipoyl like VEA_000903 PF03922 OmpW family VEA_000904 PF13599 Pentapeptide repeats (9 copies) VEA_000907 PF18416 N-acetylglucosamine binding protein domain 2 VEA_000907 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VEA_000908 PF01037 Lrp/AsnC ligand binding domain VEA_000909 PF01810 LysE type translocator VEA_000910 PF00326 Prolyl oligopeptidase family VEA_000911 PF04954 Siderophore-interacting protein VEA_000911 PF08021 Siderophore-interacting FAD-binding domain VEA_000912 PF14583 Oligogalacturonate lyase VEA_000913 PF00474 Sodium:solute symporter family VEA_000914 PF13229 Right handed beta helix region VEA_000917 PF01081 KDPG and KHG aldolase VEA_000918 PF00294 pfkB family carbohydrate kinase VEA_000921 PF07883 Cupin domain VEA_000922 PF10688 Bacterial inner membrane protein VEA_000924 PF01614 Bacterial transcriptional regulator VEA_000924 PF09339 IclR helix-turn-helix domain VEA_000927 PF03466 LysR substrate binding domain VEA_000927 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000928 PF00797 N-acetyltransferase VEA_000929 PF00107 Zinc-binding dehydrogenase VEA_000929 PF08240 Alcohol dehydrogenase GroES-like domain VEA_000930 PF00756 Putative esterase VEA_000932 PF00990 Diguanylate cyclase, GGDEF domain VEA_000932 PF17152 Periplasmic sensor domain VEA_000935 PF03466 LysR substrate binding domain VEA_000935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000939 PF00849 RNA pseudouridylate synthase VEA_000940 PF01554 MatE VEA_000941 PF03707 Bacterial signalling protein N terminal repeat VEA_000941 PF00563 EAL domain VEA_000941 PF00990 Diguanylate cyclase, GGDEF domain VEA_000943 PF06865 Pyrimidine/purine nucleoside phosphorylase VEA_000945 PF08329 Chitinase A, N-terminal domain VEA_000945 PF00704 Glycosyl hydrolases family 18 VEA_000946 PF12697 Alpha/beta hydrolase family VEA_000950 PF03600 Citrate transporter VEA_000952 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VEA_000954 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VEA_000954 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VEA_000955 PF00730 HhH-GPD superfamily base excision DNA repair protein VEA_000955 PF06029 AlkA N-terminal domain VEA_000957 PF07681 DoxX VEA_000958 PF02678 Pirin VEA_000958 PF17954 Quercetinase C-terminal cupin domain VEA_000959 PF03466 LysR substrate binding domain VEA_000959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000962 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VEA_000964 PF03616 Sodium/glutamate symporter VEA_000965 PF00155 Aminotransferase class I and II VEA_000965 PF00392 Bacterial regulatory proteins, gntR family VEA_000966 PF00005 ABC transporter VEA_000968 PF03616 Sodium/glutamate symporter VEA_000971 PF00672 HAMP domain VEA_000971 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_000971 PF17200 Single Cache domain 2 VEA_000972 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VEA_000974 PF04397 LytTr DNA-binding domain VEA_000974 PF00072 Response regulator receiver domain VEA_000975 PF06580 Histidine kinase VEA_000975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000975 PF13492 GAF domain VEA_000975 PF07694 5TMR of 5TMR-LYT VEA_000979 PF00005 ABC transporter VEA_000981 PF01098 Cell cycle protein VEA_000982 PF01709 Transcriptional regulator VEA_000984 PF00512 His Kinase A (phospho-acceptor) domain VEA_000984 PF01627 Hpt domain VEA_000984 PF00072 Response regulator receiver domain VEA_000984 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_000984 PF17149 Periplasmic sensor domain found in signal transduction proteins VEA_000984 PF00672 HAMP domain VEA_000986 PF00925 GTP cyclohydrolase II VEA_000986 PF08719 Domain of unknown function (DUF1768) VEA_000988 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_000988 PF00005 ABC transporter VEA_000989 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_000989 PF00005 ABC transporter VEA_000993 PF18607 ParA helix turn helix domain VEA_000993 PF13614 AAA domain VEA_000994 PF08775 ParB family VEA_000994 PF02195 ParB-like nuclease domain VEA_000995 PF05127 Helicase VEA_000995 PF13718 GNAT acetyltransferase 2 VEA_000997 PF00132 Bacterial transferase hexapeptide (six repeats) VEA_000998 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_000998 PF03466 LysR substrate binding domain VEA_000999 PF00267 Gram-negative porin VEA_001000 PF00367 phosphotransferase system, EIIB VEA_001000 PF02378 Phosphotransferase system, EIIC VEA_001001 PF01380 SIS domain VEA_001002 PF01418 Helix-turn-helix domain, rpiR family VEA_001002 PF01380 SIS domain VEA_001003 PF00246 Zinc carboxypeptidase VEA_001004 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_001005 PF03358 NADPH-dependent FMN reductase VEA_001008 PF00005 ABC transporter VEA_001008 PF00664 ABC transporter transmembrane region VEA_001008 PF03412 Peptidase C39 family VEA_001011 PF00529 HlyD membrane-fusion protein of T1SS VEA_001012 PF02954 Bacterial regulatory protein, Fis family VEA_001012 PF00158 Sigma-54 interaction domain VEA_001012 PF00072 Response regulator receiver domain VEA_001013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_001013 PF00512 His Kinase A (phospho-acceptor) domain VEA_001013 PF02743 Cache domain VEA_001014 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VEA_001014 PF01243 Pyridoxamine 5'-phosphate oxidase VEA_001016 PF12833 Helix-turn-helix domain VEA_001017 PF01619 Proline dehydrogenase VEA_001017 PF14850 DNA-binding domain of Proline dehydrogenase VEA_001017 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VEA_001017 PF00171 Aldehyde dehydrogenase family VEA_001019 PF00474 Sodium:solute symporter family VEA_001022 PF13302 Acetyltransferase (GNAT) domain VEA_001024 PF01037 Lrp/AsnC ligand binding domain VEA_001027 PF00005 ABC transporter VEA_001027 PF00664 ABC transporter transmembrane region VEA_001029 PF06719 AraC-type transcriptional regulator N-terminus VEA_001029 PF12833 Helix-turn-helix domain VEA_001034 PF03475 3-alpha domain VEA_001034 PF03473 MOSC domain VEA_001038 PF04542 Sigma-70 region 2 VEA_001038 PF08281 Sigma-70, region 4 VEA_001039 PF12833 Helix-turn-helix domain VEA_001039 PF01965 DJ-1/PfpI family VEA_001040 PF03466 LysR substrate binding domain VEA_001040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001043 PF13192 Thioredoxin domain VEA_001043 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_001044 PF10417 C-terminal domain of 1-Cys peroxiredoxin VEA_001044 PF00578 AhpC/TSA family VEA_001045 PF01047 MarR family VEA_001046 PF02566 OsmC-like protein VEA_001050 PF00005 ABC transporter VEA_001053 PF00535 Glycosyl transferase family 2 VEA_001058 PF00367 phosphotransferase system, EIIB VEA_001058 PF02378 Phosphotransferase system, EIIC VEA_001059 PF00072 Response regulator receiver domain VEA_001059 PF00486 Transcriptional regulatory protein, C terminal VEA_001060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_001060 PF08521 Two-component sensor kinase N-terminal VEA_001060 PF00512 His Kinase A (phospho-acceptor) domain VEA_001061 PF01547 Bacterial extracellular solute-binding protein VEA_001062 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VEA_001062 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VEA_001063 PF06276 Ferric iron reductase FhuF-like transporter VEA_001063 PF04183 IucA / IucC family VEA_001064 PF07690 Major Facilitator Superfamily VEA_001065 PF06276 Ferric iron reductase FhuF-like transporter VEA_001065 PF04183 IucA / IucC family VEA_001066 PF00206 Lyase VEA_001066 PF02655 ATP-grasp domain VEA_001067 PF00593 TonB dependent receptor VEA_001067 PF07715 TonB-dependent Receptor Plug Domain VEA_001068 PF07715 TonB-dependent Receptor Plug Domain VEA_001068 PF00593 TonB dependent receptor VEA_001068 PF07660 Secretin and TonB N terminus short domain VEA_001069 PF01497 Periplasmic binding protein VEA_001070 PF01032 FecCD transport family VEA_001071 PF01032 FecCD transport family VEA_001072 PF00005 ABC transporter VEA_001073 PF00672 HAMP domain VEA_001073 PF17200 Single Cache domain 2 VEA_001073 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001074 PF00675 Insulinase (Peptidase family M16) VEA_001074 PF05193 Peptidase M16 inactive domain VEA_001076 PF04225 Opacity-associated protein A LysM-like domain VEA_001076 PF01551 Peptidase family M23 VEA_001081 PF07690 Major Facilitator Superfamily VEA_001083 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VEA_001083 PF00128 Alpha amylase, catalytic domain VEA_001084 PF02264 LamB porin VEA_001087 PF16657 Maltogenic Amylase, C-terminal domain VEA_001087 PF00128 Alpha amylase, catalytic domain VEA_001087 PF02903 Alpha amylase, N-terminal ig-like domain VEA_001088 PF04231 Endonuclease I VEA_001089 PF17967 Pullulanase N2 domain VEA_001089 PF18494 Pullulanase Ins domain VEA_001089 PF03714 Bacterial pullanase-associated domain VEA_001089 PF11852 Domain of unknown function (DUF3372) VEA_001089 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VEA_001092 PF01276 Orn/Lys/Arg decarboxylase, major domain VEA_001092 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VEA_001092 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VEA_001093 PF13520 Amino acid permease VEA_001095 PF08543 Phosphomethylpyrimidine kinase VEA_001096 PF00375 Sodium:dicarboxylate symporter family VEA_001097 PF03193 RsgA GTPase VEA_001098 PF02378 Phosphotransferase system, EIIC VEA_001098 PF00367 phosphotransferase system, EIIB VEA_001099 PF02630 SCO1/SenC VEA_001102 PF17874 MalT-like TPR region VEA_001102 PF00196 Bacterial regulatory proteins, luxR family VEA_001103 PF00343 Carbohydrate phosphorylase VEA_001104 PF02446 4-alpha-glucanotransferase VEA_001105 PF02806 Alpha amylase, C-terminal all-beta domain VEA_001105 PF00128 Alpha amylase, catalytic domain VEA_001105 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VEA_001106 PF00912 Transglycosylase VEA_001107 PF00128 Alpha amylase, catalytic domain VEA_001110 PF07670 Nucleoside recognition VEA_001111 PF07670 Nucleoside recognition VEA_001112 PF01546 Peptidase family M20/M25/M40 VEA_001112 PF07687 Peptidase dimerisation domain VEA_001113 PF06803 Protein of unknown function (DUF1232) VEA_001114 PF00375 Sodium:dicarboxylate symporter family VEA_001117 PF13614 AAA domain VEA_001117 PF02706 Chain length determinant protein VEA_001117 PF13807 G-rich domain on putative tyrosine kinase VEA_001118 PF01451 Low molecular weight phosphotyrosine protein phosphatase VEA_001119 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VEA_001119 PF02563 Polysaccharide biosynthesis/export protein VEA_001119 PF10531 SLBB domain VEA_001121 PF00881 Nitroreductase family VEA_001122 PF01914 MarC family integral membrane protein VEA_001123 PF01734 Patatin-like phospholipase VEA_001124 PF18416 N-acetylglucosamine binding protein domain 2 VEA_001124 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VEA_001125 PF02469 Fasciclin domain VEA_001126 PF03441 FAD binding domain of DNA photolyase VEA_001126 PF00875 DNA photolyase VEA_001130 PF00561 alpha/beta hydrolase fold VEA_001131 PF07943 Penicillin-binding protein 5, C-terminal domain VEA_001131 PF00768 D-alanyl-D-alanine carboxypeptidase VEA_001132 PF00128 Alpha amylase, catalytic domain VEA_001132 PF00686 Starch binding domain VEA_001133 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VEA_001133 PF12833 Helix-turn-helix domain VEA_001134 PF00881 Nitroreductase family VEA_001136 PF03466 LysR substrate binding domain VEA_001136 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001137 PF09905 DNA-binding protein VF530 VEA_001139 PF00175 Oxidoreductase NAD-binding domain VEA_001139 PF00970 Oxidoreductase FAD-binding domain VEA_001140 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VEA_001141 PF01594 AI-2E family transporter VEA_001143 PF13533 Biotin-lipoyl like VEA_001148 PF00892 EamA-like transporter family VEA_001149 PF03466 LysR substrate binding domain VEA_001149 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001150 PF07690 Major Facilitator Superfamily VEA_001152 PF00583 Acetyltransferase (GNAT) family VEA_001154 PF00923 Transaldolase/Fructose-6-phosphate aldolase VEA_001155 PF04055 Radical SAM superfamily VEA_001163 PF08000 Bacterial PH domain VEA_001165 PF00691 OmpA family VEA_001165 PF13677 Membrane MotB of proton-channel complex MotA/MotB VEA_001166 PF01618 MotA/TolQ/ExbB proton channel family VEA_001167 PF04545 Sigma-70, region 4 VEA_001167 PF04542 Sigma-70 region 2 VEA_001168 PF03748 Flagellar basal body-associated protein FliL VEA_001171 PF02561 Flagellar protein FliS VEA_001172 PF07196 Flagellin hook IN motif VEA_001172 PF02465 Flagellar hook-associated protein 2 N-terminus VEA_001172 PF07195 Flagellar hook-associated protein 2 C-terminus VEA_001174 PF00700 Bacterial flagellin C-terminal helical region VEA_001174 PF00669 Bacterial flagellin N-terminal helical region VEA_001176 PF00771 FHIPEP family VEA_001177 PF01312 FlhB HrpN YscU SpaS Family VEA_001178 PF01311 Bacterial export proteins, family 1 VEA_001179 PF01313 Bacterial export proteins, family 3 VEA_001180 PF00813 FliP family VEA_001181 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VEA_001184 PF00158 Sigma-54 interaction domain VEA_001184 PF00072 Response regulator receiver domain VEA_001184 PF02954 Bacterial regulatory protein, Fis family VEA_001185 PF02049 Flagellar hook-basal body complex protein FliE VEA_001186 PF01514 Secretory protein of YscJ/FliF family VEA_001186 PF08345 Flagellar M-ring protein C-terminal VEA_001187 PF14841 FliG middle domain VEA_001187 PF14842 FliG N-terminal domain VEA_001187 PF01706 FliG C-terminal domain VEA_001189 PF18269 T3SS EscN ATPase C-terminal domain VEA_001189 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VEA_001192 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001192 PF03466 LysR substrate binding domain VEA_001198 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VEA_001199 PF03466 LysR substrate binding domain VEA_001199 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001205 PF00486 Transcriptional regulatory protein, C terminal VEA_001205 PF00072 Response regulator receiver domain VEA_001206 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_001206 PF00512 His Kinase A (phospho-acceptor) domain VEA_001207 PF00080 Copper/zinc superoxide dismutase (SODC) VEA_001210 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_001211 PF00563 EAL domain VEA_001211 PF03707 Bacterial signalling protein N terminal repeat VEA_001211 PF13188 PAS domain VEA_001211 PF00990 Diguanylate cyclase, GGDEF domain VEA_001212 PF00155 Aminotransferase class I and II VEA_001213 PF08240 Alcohol dehydrogenase GroES-like domain VEA_001213 PF00107 Zinc-binding dehydrogenase VEA_001220 PF00194 Eukaryotic-type carbonic anhydrase VEA_001221 PF00924 Mechanosensitive ion channel VEA_001223 PF01070 FMN-dependent dehydrogenase VEA_001224 PF02652 L-lactate permease VEA_001225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001225 PF03466 LysR substrate binding domain VEA_001226 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VEA_001226 PF00326 Prolyl oligopeptidase family VEA_001228 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_001228 PF00005 ABC transporter VEA_001230 PF13654 AAA domain VEA_001230 PF05362 Lon protease (S16) C-terminal proteolytic domain VEA_001231 PF00672 HAMP domain VEA_001231 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001231 PF17200 Single Cache domain 2 VEA_001232 PF13609 Gram-negative porin VEA_001233 PF12945 Flagellar protein YcgR VEA_001233 PF07238 PilZ domain VEA_001236 PF00583 Acetyltransferase (GNAT) family VEA_001237 PF12838 4Fe-4S dicluster domain VEA_001237 PF12800 4Fe-4S binding domain VEA_001238 PF13237 4Fe-4S dicluster domain VEA_001238 PF12801 4Fe-4S binding domain VEA_001242 PF00005 ABC transporter VEA_001242 PF12558 ATP-binding cassette cobalt transporter VEA_001243 PF07155 ECF-type riboflavin transporter, S component VEA_001244 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_001244 PF00529 HlyD membrane-fusion protein of T1SS VEA_001245 PF11742 Protein of unknown function (DUF3302) VEA_001246 PF00990 Diguanylate cyclase, GGDEF domain VEA_001249 PF01048 Phosphorylase superfamily VEA_001250 PF08349 Protein of unknown function (DUF1722) VEA_001251 PF13411 MerR HTH family regulatory protein VEA_001252 PF03441 FAD binding domain of DNA photolyase VEA_001252 PF00875 DNA photolyase VEA_001253 PF03734 L,D-transpeptidase catalytic domain VEA_001253 PF17969 L,D-transpeptidase C-terminal domain VEA_001253 PF01476 LysM domain VEA_001255 PF00271 Helicase conserved C-terminal domain VEA_001255 PF00270 DEAD/DEAH box helicase VEA_001256 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VEA_001256 PF00326 Prolyl oligopeptidase family VEA_001257 PF00593 TonB dependent receptor VEA_001257 PF07715 TonB-dependent Receptor Plug Domain VEA_001261 PF00672 HAMP domain VEA_001261 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001262 PF12849 PBP superfamily domain VEA_001263 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001264 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001265 PF00005 ABC transporter VEA_001268 PF13519 von Willebrand factor type A domain VEA_001269 PF13519 von Willebrand factor type A domain VEA_001271 PF01882 Protein of unknown function DUF58 VEA_001272 PF07726 ATPase family associated with various cellular activities (AAA) VEA_001272 PF17863 AAA lid domain VEA_001273 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001273 PF02743 Cache domain VEA_001273 PF00672 HAMP domain VEA_001275 PF00196 Bacterial regulatory proteins, luxR family VEA_001276 PF00196 Bacterial regulatory proteins, luxR family VEA_001278 PF00005 ABC transporter VEA_001278 PF00664 ABC transporter transmembrane region VEA_001279 PF00529 HlyD membrane-fusion protein of T1SS VEA_001281 PF01032 FecCD transport family VEA_001282 PF01497 Periplasmic binding protein VEA_001283 PF00005 ABC transporter VEA_001284 PF00593 TonB dependent receptor VEA_001284 PF07715 TonB-dependent Receptor Plug Domain VEA_001285 PF00005 ABC transporter VEA_001285 PF00664 ABC transporter transmembrane region VEA_001286 PF00512 His Kinase A (phospho-acceptor) domain VEA_001286 PF16736 Single Cache-like VEA_001286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_001286 PF00989 PAS fold VEA_001287 PF00072 Response regulator receiver domain VEA_001287 PF00486 Transcriptional regulatory protein, C terminal VEA_001288 PF02080 TrkA-C domain VEA_001288 PF02254 TrkA-N domain VEA_001289 PF02386 Cation transport protein VEA_001290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001290 PF03466 LysR substrate binding domain VEA_001291 PF02028 BCCT, betaine/carnitine/choline family transporter VEA_001292 PF00848 Ring hydroxylating alpha subunit (catalytic domain) VEA_001292 PF00355 Rieske [2Fe-2S] domain VEA_001294 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_001294 PF18113 Rubredoxin binding C-terminal domain VEA_001295 PF01266 FAD dependent oxidoreductase VEA_001297 PF02378 Phosphotransferase system, EIIC VEA_001298 PF00127 Copper binding proteins, plastocyanin/azurin family VEA_001299 PF13419 Haloacid dehalogenase-like hydrolase VEA_001300 PF01590 GAF domain VEA_001300 PF00158 Sigma-54 interaction domain VEA_001301 PF00301 Rubredoxin VEA_001301 PF00753 Metallo-beta-lactamase superfamily VEA_001301 PF00258 Flavodoxin VEA_001302 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_001302 PF18113 Rubredoxin binding C-terminal domain VEA_001304 PF01238 Phosphomannose isomerase type I VEA_001305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VEA_001305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VEA_001306 PF12833 Helix-turn-helix domain VEA_001308 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VEA_001310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VEA_001310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VEA_001311 PF00199 Catalase VEA_001311 PF06628 Catalase-related immune-responsive VEA_001312 PF13417 Glutathione S-transferase, N-terminal domain VEA_001313 PF16884 N-terminal domain of oxidoreductase VEA_001313 PF00107 Zinc-binding dehydrogenase VEA_001314 PF16925 Tetracyclin repressor-like, C-terminal domain VEA_001314 PF00440 Bacterial regulatory proteins, tetR family VEA_001321 PF13439 Glycosyltransferase Family 4 VEA_001321 PF00534 Glycosyl transferases group 1 VEA_001323 PF13614 AAA domain VEA_001323 PF13807 G-rich domain on putative tyrosine kinase VEA_001323 PF02706 Chain length determinant protein VEA_001326 PF02397 Bacterial sugar transferase VEA_001327 PF00005 ABC transporter VEA_001327 PF08402 TOBE domain VEA_001328 PF01547 Bacterial extracellular solute-binding protein VEA_001329 PF14785 Maltose transport system permease protein MalF P2 domain VEA_001329 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001330 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001336 PF05661 Protein of unknown function (DUF808) VEA_001337 PF01979 Amidohydrolase family VEA_001339 PF01679 Proteolipid membrane potential modulator VEA_001340 PF00111 2Fe-2S iron-sulfur cluster binding domain VEA_001340 PF03473 MOSC domain VEA_001340 PF03476 MOSC N-terminal beta barrel domain VEA_001340 PF00111 2Fe-2S iron-sulfur cluster binding domain VEA_001340 PF03476 MOSC N-terminal beta barrel domain VEA_001340 PF03473 MOSC domain VEA_001341 PF02540 NAD synthase VEA_001342 PF01467 Cytidylyltransferase-like VEA_001350 PF00005 ABC transporter VEA_001351 PF01032 FecCD transport family VEA_001353 PF02472 Biopolymer transport protein ExbD/TolR VEA_001354 PF01618 MotA/TolQ/ExbB proton channel family VEA_001355 PF03544 Gram-negative bacterial TonB protein C-terminal VEA_001356 PF04055 Radical SAM superfamily VEA_001357 PF06228 Haem utilisation ChuX/HutX VEA_001358 PF01243 Pyridoxamine 5'-phosphate oxidase VEA_001360 PF01584 CheW-like domain VEA_001360 PF00072 Response regulator receiver domain VEA_001364 PF02583 Metal-sensitive transcriptional repressor VEA_001366 PF03824 High-affinity nickel-transport protein VEA_001368 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001368 PF02743 Cache domain VEA_001368 PF00672 HAMP domain VEA_001369 PF03466 LysR substrate binding domain VEA_001369 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001370 PF17848 Acetyl-coA carboxylase zinc finger domain VEA_001370 PF01039 Carboxyl transferase domain VEA_001372 PF08453 Peptidase family M9 N-terminal VEA_001372 PF01752 Collagenase VEA_001372 PF04151 Bacterial pre-peptidase C-terminal domain VEA_001374 PF02627 Carboxymuconolactone decarboxylase family VEA_001376 PF00128 Alpha amylase, catalytic domain VEA_001379 PF00999 Sodium/hydrogen exchanger family VEA_001379 PF02254 TrkA-N domain VEA_001380 PF02525 Flavodoxin-like fold VEA_001381 PF00582 Universal stress protein family VEA_001382 PF00005 ABC transporter VEA_001382 PF16326 ABC transporter C-terminal domain VEA_001382 PF12848 ABC transporter VEA_001383 PF00326 Prolyl oligopeptidase family VEA_001383 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VEA_001385 PF13533 Biotin-lipoyl like VEA_001386 PF00873 AcrB/AcrD/AcrF family VEA_001387 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VEA_001389 PF13302 Acetyltransferase (GNAT) domain VEA_001391 PF00990 Diguanylate cyclase, GGDEF domain VEA_001391 PF17151 Periplasmic sensor domain VEA_001395 PF00873 AcrB/AcrD/AcrF family VEA_001399 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VEA_001399 PF12838 4Fe-4S dicluster domain VEA_001399 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VEA_001399 PF00384 Molybdopterin oxidoreductase VEA_001399 PF01568 Molydopterin dinucleotide binding domain VEA_001403 PF00005 ABC transporter VEA_001405 PF10282 Lactonase, 7-bladed beta-propeller VEA_001406 PF02567 Phenazine biosynthesis-like protein VEA_001407 PF01161 Phosphatidylethanolamine-binding protein VEA_001409 PF01758 Sodium Bile acid symporter family VEA_001412 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VEA_001413 PF02378 Phosphotransferase system, EIIC VEA_001413 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VEA_001414 PF08240 Alcohol dehydrogenase GroES-like domain VEA_001414 PF00107 Zinc-binding dehydrogenase VEA_001420 PF03222 Tryptophan/tyrosine permease family VEA_001423 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001423 PF00672 HAMP domain VEA_001423 PF02743 Cache domain VEA_001428 PF01476 LysM domain VEA_001428 PF08525 Opacity-associated protein A N-terminal motif VEA_001428 PF01551 Peptidase family M23 VEA_001429 PF00563 EAL domain VEA_001429 PF00990 Diguanylate cyclase, GGDEF domain VEA_001429 PF08447 PAS fold VEA_001429 PF08448 PAS fold VEA_001430 PF03466 LysR substrate binding domain VEA_001430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001431 PF07690 Major Facilitator Superfamily VEA_001434 PF00462 Glutaredoxin VEA_001435 PF00892 EamA-like transporter family VEA_001438 PF01557 Fumarylacetoacetate (FAA) hydrolase family VEA_001441 PF12833 Helix-turn-helix domain VEA_001442 PF01810 LysE type translocator VEA_001444 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VEA_001444 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VEA_001444 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VEA_001444 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VEA_001445 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VEA_001445 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VEA_001446 PF00115 Cytochrome C and Quinol oxidase polypeptide I VEA_001447 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VEA_001448 PF00510 Cytochrome c oxidase subunit III VEA_001452 PF02628 Cytochrome oxidase assembly protein VEA_001453 PF01040 UbiA prenyltransferase family VEA_001454 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VEA_001454 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VEA_001456 PF00691 OmpA family VEA_001456 PF13488 Glycine zipper VEA_001460 PF00313 'Cold-shock' DNA-binding domain VEA_001461 PF03889 Alternative ribosome-rescue factor A VEA_001462 PF00990 Diguanylate cyclase, GGDEF domain VEA_001465 PF12704 MacB-like periplasmic core domain VEA_001465 PF00005 ABC transporter VEA_001465 PF02687 FtsX-like permease family VEA_001466 PF12704 MacB-like periplasmic core domain VEA_001466 PF02687 FtsX-like permease family VEA_001466 PF00005 ABC transporter VEA_001468 PF17200 Single Cache domain 2 VEA_001468 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001468 PF00672 HAMP domain VEA_001469 PF00210 Ferritin-like domain VEA_001471 PF07995 Glucose / Sorbosone dehydrogenase VEA_001472 PF00465 Iron-containing alcohol dehydrogenase VEA_001475 PF00892 EamA-like transporter family VEA_001477 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001477 PF03466 LysR substrate binding domain VEA_001479 PF13193 AMP-binding enzyme C-terminal domain VEA_001479 PF00501 AMP-binding enzyme VEA_001480 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VEA_001481 PF01329 Pterin 4 alpha carbinolamine dehydratase VEA_001485 PF12843 Putative quorum-sensing-regulated virulence factor VEA_001489 PF00082 Subtilase family VEA_001489 PF04151 Bacterial pre-peptidase C-terminal domain VEA_001489 PF05922 Peptidase inhibitor I9 VEA_001494 PF01925 Sulfite exporter TauE/SafE VEA_001496 PF00270 DEAD/DEAH box helicase VEA_001496 PF00271 Helicase conserved C-terminal domain VEA_001497 PF09905 DNA-binding protein VF530 VEA_001499 PF00291 Pyridoxal-phosphate dependent enzyme VEA_001500 PF00773 RNB domain VEA_001500 PF17876 Cold shock domain VEA_001500 PF08206 Ribonuclease B OB domain VEA_001500 PF00575 S1 RNA binding domain VEA_001500 PF08461 Ribonuclease R winged-helix domain VEA_001501 PF00313 'Cold-shock' DNA-binding domain VEA_001503 PF01470 Pyroglutamyl peptidase VEA_001505 PF02492 CobW/HypB/UreG, nucleotide-binding domain VEA_001505 PF07683 Cobalamin synthesis protein cobW C-terminal domain VEA_001506 PF00271 Helicase conserved C-terminal domain VEA_001506 PF00270 DEAD/DEAH box helicase VEA_001510 PF00563 EAL domain VEA_001510 PF12792 CSS motif domain associated with EAL VEA_001511 PF00005 ABC transporter VEA_001512 PF08447 PAS fold VEA_001512 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001517 PF07883 Cupin domain VEA_001517 PF01381 Helix-turn-helix VEA_001518 PF00239 Resolvase, N terminal domain VEA_001518 PF02796 Helix-turn-helix domain of resolvase VEA_001521 PF12849 PBP superfamily domain VEA_001523 PF12833 Helix-turn-helix domain VEA_001524 PF00575 S1 RNA binding domain VEA_001524 PF08206 Ribonuclease B OB domain VEA_001524 PF00773 RNB domain VEA_001525 PF00271 Helicase conserved C-terminal domain VEA_001525 PF00270 DEAD/DEAH box helicase VEA_001525 PF03880 DbpA RNA binding domain VEA_001526 PF03707 Bacterial signalling protein N terminal repeat VEA_001526 PF00990 Diguanylate cyclase, GGDEF domain VEA_001526 PF00563 EAL domain VEA_001527 PF00871 Acetokinase family VEA_001528 PF13426 PAS domain VEA_001528 PF08447 PAS fold VEA_001528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001529 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001530 PF00005 ABC transporter VEA_001530 PF00571 CBS domain VEA_001531 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001532 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VEA_001535 PF01965 DJ-1/PfpI family VEA_001535 PF12833 Helix-turn-helix domain VEA_001536 PF00561 alpha/beta hydrolase fold VEA_001537 PF04909 Amidohydrolase VEA_001538 PF01565 FAD binding domain VEA_001538 PF02913 FAD linked oxidases, C-terminal domain VEA_001538 PF13183 4Fe-4S dicluster domain VEA_001540 PF00682 HMGL-like VEA_001541 PF00378 Enoyl-CoA hydratase/isomerase VEA_001542 PF01039 Carboxyl transferase domain VEA_001543 PF02770 Acyl-CoA dehydrogenase, middle domain VEA_001543 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VEA_001543 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VEA_001544 PF00376 MerR family regulatory protein VEA_001544 PF09278 MerR, DNA binding VEA_001545 PF00108 Thiolase, N-terminal domain VEA_001545 PF02803 Thiolase, C-terminal domain VEA_001546 PF00171 Aldehyde dehydrogenase family VEA_001548 PF00378 Enoyl-CoA hydratase/isomerase VEA_001549 PF00378 Enoyl-CoA hydratase/isomerase VEA_001550 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VEA_001550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VEA_001553 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VEA_001553 PF06481 COX Aromatic Rich Motif VEA_001554 PF00115 Cytochrome C and Quinol oxidase polypeptide I VEA_001555 PF00510 Cytochrome c oxidase subunit III VEA_001557 PF01040 UbiA prenyltransferase family VEA_001560 PF08031 Berberine and berberine like VEA_001560 PF01565 FAD binding domain VEA_001563 PF00171 Aldehyde dehydrogenase family VEA_001572 PF00005 ABC transporter VEA_001573 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_001574 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001575 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001576 PF04444 Catechol dioxygenase N terminus VEA_001576 PF00775 Dioxygenase VEA_001578 PF00691 OmpA family VEA_001578 PF01389 OmpA-like transmembrane domain VEA_001582 PF01012 Electron transfer flavoprotein domain VEA_001582 PF00766 Electron transfer flavoprotein FAD-binding domain VEA_001583 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VEA_001583 PF02817 e3 binding domain VEA_001583 PF00364 Biotin-requiring enzyme VEA_001584 PF02780 Transketolase, C-terminal domain VEA_001584 PF02779 Transketolase, pyrimidine binding domain VEA_001585 PF00676 Dehydrogenase E1 component VEA_001588 PF00012 Hsp70 protein VEA_001589 PF04314 Copper chaperone PCu(A)C VEA_001593 PF00072 Response regulator receiver domain VEA_001593 PF00486 Transcriptional regulatory protein, C terminal VEA_001597 PF00082 Subtilase family VEA_001597 PF01483 Proprotein convertase P-domain VEA_001599 PF00990 Diguanylate cyclase, GGDEF domain VEA_001599 PF07694 5TMR of 5TMR-LYT VEA_001600 PF03222 Tryptophan/tyrosine permease family VEA_001602 PF00384 Molybdopterin oxidoreductase VEA_001602 PF01568 Molydopterin dinucleotide binding domain VEA_001602 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VEA_001603 PF10414 Sirohaem synthase dimerisation region VEA_001603 PF14824 Sirohaem biosynthesis protein central VEA_001603 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VEA_001604 PF00591 Glycosyl transferase family, a/b domain VEA_001604 PF02885 Glycosyl transferase family, helical bundle domain VEA_001605 PF01738 Dienelactone hydrolase family VEA_001606 PF08376 Nitrate and nitrite sensing VEA_001606 PF03861 ANTAR domain VEA_001607 PF00005 ABC transporter VEA_001608 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001609 PF00005 ABC transporter VEA_001610 PF08239 Bacterial SH3 domain VEA_001613 PF01471 Putative peptidoglycan binding domain VEA_001613 PF13401 AAA domain VEA_001614 PF01966 HD domain VEA_001614 PF01743 Poly A polymerase head domain VEA_001614 PF12627 Probable RNA and SrmB- binding site of polymerase A VEA_001615 PF02673 Bacitracin resistance protein BacA VEA_001616 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VEA_001617 PF02152 Dihydroneopterin aldolase VEA_001618 PF02660 Glycerol-3-phosphate acyltransferase VEA_001619 PF00561 alpha/beta hydrolase fold VEA_001620 PF00814 Glycoprotease family VEA_001621 PF01165 Ribosomal protein S21 VEA_001622 PF09424 Yqey-like protein VEA_001623 PF01807 CHC2 zinc finger VEA_001623 PF10410 DnaB-helicase binding domain of primase VEA_001623 PF08278 DNA primase DnaG DnaB-binding VEA_001623 PF08275 DNA primase catalytic core, N-terminal domain VEA_001624 PF04542 Sigma-70 region 2 VEA_001624 PF03979 Sigma-70 factor, region 1.1 VEA_001624 PF04539 Sigma-70 region 3 VEA_001624 PF04546 Sigma-70, non-essential region VEA_001624 PF04545 Sigma-70, region 4 VEA_001624 PF00140 Sigma-70 factor, region 1.2 VEA_001625 PF03180 NLPA lipoprotein VEA_001632 PF02378 Phosphotransferase system, EIIC VEA_001632 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VEA_001632 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VEA_001633 PF08125 Mannitol dehydrogenase C-terminal domain VEA_001633 PF01232 Mannitol dehydrogenase Rossmann domain VEA_001634 PF05068 Mannitol repressor VEA_001635 PF00989 PAS fold VEA_001635 PF00158 Sigma-54 interaction domain VEA_001635 PF02954 Bacterial regulatory protein, Fis family VEA_001636 PF05524 PEP-utilising enzyme, N-terminal VEA_001636 PF00391 PEP-utilising enzyme, mobile domain VEA_001636 PF02896 PEP-utilising enzyme, TIM barrel domain VEA_001637 PF02734 DAK2 domain VEA_001638 PF02733 Dak1 domain VEA_001639 PF00465 Iron-containing alcohol dehydrogenase VEA_001640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_001640 PF00512 His Kinase A (phospho-acceptor) domain VEA_001640 PF00672 HAMP domain VEA_001641 PF00486 Transcriptional regulatory protein, C terminal VEA_001641 PF00072 Response regulator receiver domain VEA_001643 PF01380 SIS domain VEA_001644 PF08220 DeoR-like helix-turn-helix domain VEA_001644 PF00455 DeoR C terminal sensor domain VEA_001645 PF02887 Pyruvate kinase, alpha/beta domain VEA_001645 PF00224 Pyruvate kinase, barrel domain VEA_001647 PF07694 5TMR of 5TMR-LYT VEA_001647 PF00990 Diguanylate cyclase, GGDEF domain VEA_001648 PF10369 Small subunit of acetolactate synthase VEA_001649 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VEA_001649 PF00205 Thiamine pyrophosphate enzyme, central domain VEA_001649 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VEA_001650 PF00501 AMP-binding enzyme VEA_001651 PF03466 LysR substrate binding domain VEA_001651 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001653 PF01569 PAP2 superfamily VEA_001656 PF08502 LeuA allosteric (dimerisation) domain VEA_001656 PF00682 HMGL-like VEA_001657 PF00180 Isocitrate/isopropylmalate dehydrogenase VEA_001658 PF00330 Aconitase family (aconitate hydratase) VEA_001659 PF00694 Aconitase C-terminal domain VEA_001661 PF00226 DnaJ domain VEA_001661 PF05099 Tellurite resistance protein TerB VEA_001662 PF03968 OstA-like protein VEA_001662 PF04453 LPS transport system D VEA_001663 PF09312 SurA N-terminal domain VEA_001664 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VEA_001665 PF00398 Ribosomal RNA adenine dimethylase VEA_001666 PF04379 ApaG domain VEA_001667 PF00149 Calcineurin-like phosphoesterase VEA_001668 PF00186 Dihydrofolate reductase VEA_001669 PF12821 Threonine/Serine exporter, ThrE VEA_001670 PF06738 Putative threonine/serine exporter VEA_001671 PF01018 GTP1/OBG VEA_001671 PF01926 50S ribosome-binding GTPase VEA_001672 PF01016 Ribosomal L27 protein VEA_001673 PF00829 Ribosomal prokaryotic L21 protein VEA_001674 PF00348 Polyprenyl synthetase VEA_001676 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VEA_001676 PF00056 lactate/malate dehydrogenase, NAD binding domain VEA_001677 PF02863 Arginine repressor, C-terminal domain VEA_001677 PF01316 Arginine repressor, DNA binding domain VEA_001678 PF16868 NMT1-like family VEA_001682 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VEA_001683 PF03466 LysR substrate binding domain VEA_001683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001684 PF00005 ABC transporter VEA_001685 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001687 PF02441 Flavoprotein VEA_001688 PF01225 Mur ligase family, catalytic domain VEA_001688 PF02875 Mur ligase family, glutamate ligase domain VEA_001688 PF08245 Mur ligase middle domain VEA_001689 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VEA_001690 PF00719 Inorganic pyrophosphatase VEA_001692 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VEA_001693 PF04357 TamB, inner membrane protein subunit of TAM complex VEA_001694 PF17243 POTRA domain TamA domain 1 VEA_001694 PF01103 Surface antigen VEA_001695 PF01625 Peptide methionine sulfoxide reductase VEA_001696 PF06526 Protein of unknown function (DUF1107) VEA_001697 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VEA_001698 PF10795 Protein of unknown function (DUF2607) VEA_001700 PF00005 ABC transporter VEA_001705 PF03600 Citrate transporter VEA_001705 PF02080 TrkA-C domain VEA_001706 PF00009 Elongation factor Tu GTP binding domain VEA_001707 PF01507 Phosphoadenosine phosphosulfate reductase family VEA_001708 PF14824 Sirohaem biosynthesis protein central VEA_001708 PF10414 Sirohaem synthase dimerisation region VEA_001708 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VEA_001709 PF02872 5'-nucleotidase, C-terminal domain VEA_001709 PF00149 Calcineurin-like phosphoesterase VEA_001711 PF03880 DbpA RNA binding domain VEA_001711 PF00270 DEAD/DEAH box helicase VEA_001711 PF00271 Helicase conserved C-terminal domain VEA_001712 PF13673 Acetyltransferase (GNAT) domain VEA_001714 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VEA_001714 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VEA_001716 PF01196 Ribosomal protein L17 VEA_001717 PF01000 RNA polymerase Rpb3/RpoA insert domain VEA_001717 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VEA_001717 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VEA_001718 PF01479 S4 domain VEA_001718 PF00163 Ribosomal protein S4/S9 N-terminal domain VEA_001719 PF00411 Ribosomal protein S11 VEA_001720 PF00416 Ribosomal protein S13/S18 VEA_001721 PF00444 Ribosomal protein L36 VEA_001722 PF00344 SecY translocase VEA_001724 PF00327 Ribosomal protein L30p/L7e VEA_001725 PF00333 Ribosomal protein S5, N-terminal domain VEA_001725 PF03719 Ribosomal protein S5, C-terminal domain VEA_001726 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VEA_001727 PF00347 Ribosomal protein L6 VEA_001728 PF00410 Ribosomal protein S8 VEA_001729 PF00253 Ribosomal protein S14p/S29e VEA_001730 PF00281 Ribosomal protein L5 VEA_001730 PF00673 ribosomal L5P family C-terminus VEA_001731 PF00467 KOW motif VEA_001731 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VEA_001732 PF00238 Ribosomal protein L14p/L23e VEA_001733 PF00366 Ribosomal protein S17 VEA_001734 PF00831 Ribosomal L29 protein VEA_001735 PF00252 Ribosomal protein L16p/L10e VEA_001736 PF00189 Ribosomal protein S3, C-terminal domain VEA_001736 PF07650 KH domain VEA_001737 PF00237 Ribosomal protein L22p/L17e VEA_001738 PF00203 Ribosomal protein S19 VEA_001739 PF00181 Ribosomal Proteins L2, RNA binding domain VEA_001739 PF03947 Ribosomal Proteins L2, C-terminal domain VEA_001740 PF00276 Ribosomal protein L23 VEA_001741 PF00573 Ribosomal protein L4/L1 family VEA_001742 PF00297 Ribosomal protein L3 VEA_001743 PF00338 Ribosomal protein S10p/S20e VEA_001744 PF01197 Ribosomal protein L31 VEA_001745 PF00270 DEAD/DEAH box helicase VEA_001745 PF00271 Helicase conserved C-terminal domain VEA_001745 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VEA_001745 PF18074 Primosomal protein N C-terminal domain VEA_001745 PF17764 3′ DNA-binding domain (3′BD) VEA_001746 PF00356 Bacterial regulatory proteins, lacI family VEA_001748 PF00227 Proteasome subunit VEA_001749 PF00004 ATPase family associated with various cellular activities (AAA) VEA_001749 PF07724 AAA domain (Cdc48 subfamily) VEA_001750 PF01040 UbiA prenyltransferase family VEA_001751 PF03737 Aldolase/RraA VEA_001752 PF06005 Cell division protein ZapB VEA_001754 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VEA_001755 PF00455 DeoR C terminal sensor domain VEA_001755 PF08220 DeoR-like helix-turn-helix domain VEA_001760 PF00121 Triosephosphate isomerase VEA_001761 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VEA_001761 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VEA_001761 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VEA_001764 PF02719 Polysaccharide biosynthesis protein VEA_001765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VEA_001768 PF00534 Glycosyl transferases group 1 VEA_001768 PF13477 Glycosyl transferase 4-like VEA_001770 PF00535 Glycosyl transferase family 2 VEA_001770 PF01501 Glycosyl transferase family 8 VEA_001772 PF01370 NAD dependent epimerase/dehydratase family VEA_001773 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VEA_001773 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VEA_001773 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VEA_001774 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VEA_001774 PF10996 Beta-Casp domain VEA_001774 PF00753 Metallo-beta-lactamase superfamily VEA_001775 PF00953 Glycosyl transferase family 4 VEA_001776 PF00793 DAHP synthetase I family VEA_001777 PF02348 Cytidylyltransferase VEA_001778 PF05159 Capsule polysaccharide biosynthesis protein VEA_001783 PF00005 ABC transporter VEA_001784 PF01061 ABC-2 type transporter VEA_001785 PF01380 SIS domain VEA_001785 PF00571 CBS domain VEA_001787 PF02563 Polysaccharide biosynthesis/export protein VEA_001787 PF10531 SLBB domain VEA_001789 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VEA_001791 PF06082 Exopolysaccharide biosynthesis protein YbjH VEA_001792 PF01370 NAD dependent epimerase/dehydratase family VEA_001793 PF03279 Bacterial lipid A biosynthesis acyltransferase VEA_001794 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VEA_001795 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VEA_001796 PF07922 Glycosyltransferase family 52 VEA_001797 PF02348 Cytidylyltransferase VEA_001798 PF00483 Nucleotidyl transferase VEA_001800 PF03102 NeuB family VEA_001800 PF08666 SAF domain VEA_001801 PF02350 UDP-N-acetylglucosamine 2-epimerase VEA_001802 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VEA_001803 PF02719 Polysaccharide biosynthesis protein VEA_001805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VEA_001807 PF00483 Nucleotidyl transferase VEA_001808 PF16363 GDP-mannose 4,6 dehydratase VEA_001810 PF01219 Prokaryotic diacylglycerol kinase VEA_001811 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VEA_001812 PF00535 Glycosyl transferase family 2 VEA_001813 PF00535 Glycosyl transferase family 2 VEA_001814 PF01467 Cytidylyltransferase-like VEA_001815 PF05686 Glycosyl transferase family 90 VEA_001817 PF06827 Zinc finger found in FPG and IleRS VEA_001817 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VEA_001817 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VEA_001819 PF00471 Ribosomal protein L33 VEA_001820 PF00830 Ribosomal L28 family VEA_001821 PF04002 RadC-like JAB domain VEA_001822 PF17200 Single Cache domain 2 VEA_001822 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_001822 PF00672 HAMP domain VEA_001823 PF04127 DNA / pantothenate metabolism flavoprotein VEA_001823 PF02441 Flavoprotein VEA_001824 PF00440 Bacterial regulatory proteins, tetR family VEA_001825 PF03279 Bacterial lipid A biosynthesis acyltransferase VEA_001826 PF00156 Phosphoribosyl transferase domain VEA_001827 PF03725 3' exoribonuclease family, domain 2 VEA_001827 PF01138 3' exoribonuclease family, domain 1 VEA_001828 PF03755 YicC-like family, N-terminal region VEA_001828 PF08340 Domain of unknown function (DUF1732) VEA_001835 PF00075 RNase H VEA_001836 PF04002 RadC-like JAB domain VEA_001848 PF00563 EAL domain VEA_001848 PF00990 Diguanylate cyclase, GGDEF domain VEA_001848 PF13426 PAS domain VEA_001850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_001850 PF00005 ABC transporter VEA_001851 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_001851 PF00005 ABC transporter VEA_001852 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_001853 PF12911 N-terminal TM domain of oligopeptide transport permease C VEA_001853 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001854 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001855 PF07715 TonB-dependent Receptor Plug Domain VEA_001855 PF00593 TonB dependent receptor VEA_001858 PF01618 MotA/TolQ/ExbB proton channel family VEA_001859 PF02472 Biopolymer transport protein ExbD/TolR VEA_001862 PF00625 Guanylate kinase VEA_001863 PF01192 RNA polymerase Rpb6 VEA_001864 PF02824 TGS domain VEA_001864 PF04607 Region found in RelA / SpoT proteins VEA_001864 PF13291 ACT domain VEA_001865 PF12105 SpoU, rRNA methylase, C-terminal VEA_001865 PF00588 SpoU rRNA Methylase family VEA_001866 PF00270 DEAD/DEAH box helicase VEA_001866 PF00271 Helicase conserved C-terminal domain VEA_001866 PF17191 RecG wedge domain VEA_001868 PF00860 Permease family VEA_001869 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_001869 PF00672 HAMP domain VEA_001869 PF00512 His Kinase A (phospho-acceptor) domain VEA_001870 PF00072 Response regulator receiver domain VEA_001870 PF00486 Transcriptional regulatory protein, C terminal VEA_001872 PF03449 Transcription elongation factor, N-terminal VEA_001872 PF01272 Transcription elongation factor, GreA/GreB, C-term VEA_001874 PF17674 HHH domain VEA_001874 PF00575 S1 RNA binding domain VEA_001874 PF09371 Tex-like protein N-terminal domain VEA_001874 PF16921 Tex protein YqgF-like domain VEA_001876 PF00561 alpha/beta hydrolase fold VEA_001878 PF00156 Phosphoribosyl transferase domain VEA_001879 PF01106 NifU-like domain VEA_001879 PF01521 Iron-sulphur cluster biosynthesis VEA_001880 PF00293 NUDIX domain VEA_001881 PF00459 Inositol monophosphatase family VEA_001882 PF01203 Type II secretion system (T2SS), protein N VEA_001883 PF04612 Type II secretion system (T2SS), protein M VEA_001884 PF12693 GspL periplasmic domain VEA_001884 PF05134 Type II secretion system (T2SS), protein L VEA_001885 PF03934 Type II secretion system (T2SS), protein K VEA_001886 PF07963 Prokaryotic N-terminal methylation motif VEA_001886 PF11612 Type II secretion system (T2SS), protein J VEA_001887 PF07963 Prokaryotic N-terminal methylation motif VEA_001887 PF02501 Type II secretion system (T2SS), protein I VEA_001888 PF12019 Type II transport protein GspH VEA_001889 PF07963 Prokaryotic N-terminal methylation motif VEA_001889 PF08334 Type II secretion system (T2SS), protein G VEA_001890 PF00482 Type II secretion system (T2SS), protein F VEA_001891 PF00437 Type II/IV secretion system protein VEA_001892 PF03958 Bacterial type II/III secretion system short domain VEA_001892 PF00263 Bacterial type II and III secretion system protein VEA_001893 PF11356 Type II secretion system protein C VEA_001894 PF01479 S4 domain VEA_001895 PF01430 Hsp33 protein VEA_001896 PF01293 Phosphoenolpyruvate carboxykinase VEA_001898 PF09500 Putative thioesterase (yiiD_Cterm) VEA_001898 PF00583 Acetyltransferase (GNAT) family VEA_001899 PF02580 D-Tyr-tRNA(Tyr) deacylase VEA_001900 PF03631 Virulence factor BrkB VEA_001905 PF03951 Glutamine synthetase, beta-Grasp domain VEA_001905 PF00120 Glutamine synthetase, catalytic domain VEA_001907 PF00512 His Kinase A (phospho-acceptor) domain VEA_001907 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_001907 PF00989 PAS fold VEA_001908 PF00072 Response regulator receiver domain VEA_001908 PF02954 Bacterial regulatory protein, Fis family VEA_001908 PF00158 Sigma-54 interaction domain VEA_001909 PF00563 EAL domain VEA_001909 PF00990 Diguanylate cyclase, GGDEF domain VEA_001909 PF03707 Bacterial signalling protein N terminal repeat VEA_001910 PF00962 Adenosine/AMP deaminase VEA_001911 PF06969 HemN C-terminal domain VEA_001911 PF04055 Radical SAM superfamily VEA_001912 PF10675 Protein of unknown function (DUF2489) VEA_001913 PF04220 Der GTPase activator (YihI) VEA_001915 PF00034 Cytochrome c VEA_001916 PF01926 50S ribosome-binding GTPase VEA_001917 PF01367 5'-3' exonuclease, C-terminal SAM fold VEA_001917 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VEA_001917 PF00476 DNA polymerase family A VEA_001917 PF01612 3'-5' exonuclease VEA_001918 PF00583 Acetyltransferase (GNAT) family VEA_001919 PF00490 Delta-aminolevulinic acid dehydratase VEA_001920 PF01026 TatD related DNase VEA_001922 PF00902 Sec-independent protein translocase protein (TatC) VEA_001923 PF02416 mttA/Hcf106 family VEA_001924 PF02416 mttA/Hcf106 family VEA_001925 PF03109 ABC1 family VEA_001926 PF02036 SCP-2 sterol transfer family VEA_001927 PF01209 ubiE/COQ5 methyltransferase family VEA_001928 PF02646 RmuC family VEA_001930 PF00563 EAL domain VEA_001930 PF00990 Diguanylate cyclase, GGDEF domain VEA_001930 PF03707 Bacterial signalling protein N terminal repeat VEA_001931 PF01594 AI-2E family transporter VEA_001937 PF00781 Diacylglycerol kinase catalytic domain VEA_001942 PF01590 GAF domain VEA_001942 PF00158 Sigma-54 interaction domain VEA_001942 PF02954 Bacterial regulatory protein, Fis family VEA_001944 PF10625 Universal stress protein B (UspB) VEA_001945 PF00210 Ferritin-like domain VEA_001946 PF00582 Universal stress protein family VEA_001947 PF00892 EamA-like transporter family VEA_001949 PF04445 Putative SAM-dependent methyltransferase VEA_001950 PF08448 PAS fold VEA_001950 PF00990 Diguanylate cyclase, GGDEF domain VEA_001950 PF00563 EAL domain VEA_001951 PF01037 Lrp/AsnC ligand binding domain VEA_001952 PF01432 Peptidase family M3 VEA_001953 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VEA_001954 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VEA_001954 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_001955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001955 PF03466 LysR substrate binding domain VEA_001956 PF01048 Phosphorylase superfamily VEA_001957 PF01081 KDPG and KHG aldolase VEA_001958 PF02447 GntP family permease VEA_001959 PF01202 Shikimate kinase VEA_001960 PF00920 Dehydratase family VEA_001961 PF00893 Small Multidrug Resistance protein VEA_001962 PF00893 Small Multidrug Resistance protein VEA_001963 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001963 PF03466 LysR substrate binding domain VEA_001964 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VEA_001964 PF00356 Bacterial regulatory proteins, lacI family VEA_001972 PF00528 Binding-protein-dependent transport system inner membrane component VEA_001972 PF12911 N-terminal TM domain of oligopeptide transport permease C VEA_001974 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_001975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_001975 PF00005 ABC transporter VEA_001976 PF13419 Haloacid dehalogenase-like hydrolase VEA_001977 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VEA_001978 PF00580 UvrD/REP helicase N-terminal domain VEA_001978 PF13361 UvrD-like helicase C-terminal domain VEA_001979 PF00440 Bacterial regulatory proteins, tetR family VEA_001979 PF16295 Tetracyclin repressor-like, C-terminal domain VEA_001980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_001981 PF00873 AcrB/AcrD/AcrF family VEA_001982 PF04380 Membrane fusogenic activity VEA_001983 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VEA_001983 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VEA_001984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001984 PF03466 LysR substrate binding domain VEA_001985 PF12724 Flavodoxin domain VEA_001986 PF02386 Cation transport protein VEA_001987 PF09186 Domain of unknown function (DUF1949) VEA_001987 PF01205 Uncharacterized protein family UPF0029 VEA_001988 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VEA_001988 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VEA_001988 PF00378 Enoyl-CoA hydratase/isomerase VEA_001989 PF00108 Thiolase, N-terminal domain VEA_001989 PF02803 Thiolase, C-terminal domain VEA_001990 PF00107 Zinc-binding dehydrogenase VEA_001990 PF08240 Alcohol dehydrogenase GroES-like domain VEA_001991 PF03466 LysR substrate binding domain VEA_001991 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_001993 PF01206 Sulfurtransferase TusA VEA_001996 PF01169 Uncharacterized protein family UPF0016 VEA_001999 PF02091 Glycyl-tRNA synthetase alpha subunit VEA_002000 PF05746 DALR anticodon binding domain VEA_002000 PF02092 Glycyl-tRNA synthetase beta subunit VEA_002001 PF00128 Alpha amylase, catalytic domain VEA_002002 PF00155 Aminotransferase class I and II VEA_002003 PF00011 Hsp20/alpha crystallin family VEA_002006 PF00986 DNA gyrase B subunit, carboxyl terminus VEA_002006 PF00204 DNA gyrase B VEA_002006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_002006 PF18053 DNA gyrase B subunit insert domain VEA_002006 PF01751 Toprim domain VEA_002007 PF02463 RecF/RecN/SMC N terminal domain VEA_002008 PF02768 DNA polymerase III beta subunit, C-terminal domain VEA_002008 PF02767 DNA polymerase III beta subunit, central domain VEA_002008 PF00712 DNA polymerase III beta subunit, N-terminal domain VEA_002009 PF11638 DnaA N-terminal domain VEA_002009 PF00308 Bacterial dnaA protein VEA_002009 PF08299 Bacterial dnaA protein helix-turn-helix VEA_002010 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_002011 PF00528 Binding-protein-dependent transport system inner membrane component VEA_002012 PF00005 ABC transporter VEA_002013 PF00468 Ribosomal protein L34 VEA_002014 PF00825 Ribonuclease P VEA_002015 PF01809 Putative membrane protein insertion efficiency factor VEA_002016 PF14849 YidC periplasmic domain VEA_002016 PF02096 60Kd inner membrane protein VEA_002017 PF01926 50S ribosome-binding GTPase VEA_002017 PF10396 GTP-binding protein TrmE N-terminus VEA_002017 PF12631 MnmE helical domain VEA_002018 PF00258 Flavodoxin VEA_002019 PF13932 GidA associated domain VEA_002019 PF01134 Glucose inhibited division protein A VEA_002020 PF02527 rRNA small subunit methyltransferase G VEA_002021 PF13614 AAA domain VEA_002022 PF17762 HTH domain found in ParB protein VEA_002022 PF02195 ParB-like nuclease domain VEA_002023 PF03899 ATP synthase I chain VEA_002024 PF00119 ATP synthase A chain VEA_002025 PF00137 ATP synthase subunit C VEA_002026 PF00430 ATP synthase B/B' CF(0) VEA_002027 PF00213 ATP synthase delta (OSCP) subunit VEA_002028 PF02874 ATP synthase alpha/beta family, beta-barrel domain VEA_002028 PF00306 ATP synthase alpha/beta chain, C terminal domain VEA_002028 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VEA_002029 PF00231 ATP synthase VEA_002030 PF02874 ATP synthase alpha/beta family, beta-barrel domain VEA_002030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VEA_002031 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VEA_002031 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VEA_002032 PF12804 MobA-like NTP transferase domain VEA_002032 PF00132 Bacterial transferase hexapeptide (six repeats) VEA_002033 PF00528 Binding-protein-dependent transport system inner membrane component VEA_002034 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_002035 PF07690 Major Facilitator Superfamily VEA_002036 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002036 PF03466 LysR substrate binding domain VEA_002037 PF00585 C-terminal regulatory domain of Threonine dehydratase VEA_002037 PF00291 Pyridoxal-phosphate dependent enzyme VEA_002038 PF00920 Dehydratase family VEA_002039 PF01063 Amino-transferase class IV VEA_002041 PF00205 Thiamine pyrophosphate enzyme, central domain VEA_002041 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VEA_002041 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VEA_002042 PF01078 Magnesium chelatase, subunit ChlI VEA_002042 PF13335 Magnesium chelatase, subunit ChlI C-terminal VEA_002044 PF01553 Acyltransferase VEA_002045 PF01323 DSBA-like thioredoxin domain VEA_002046 PF01636 Phosphotransferase enzyme family VEA_002047 PF12801 4Fe-4S binding domain VEA_002047 PF13746 4Fe-4S dicluster domain VEA_002047 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VEA_002048 PF06288 Protein of unknown function (DUF1040) VEA_002050 PF07070 SpoOM protein VEA_002051 PF03006 Haemolysin-III related VEA_002053 PF02386 Cation transport protein VEA_002054 PF02080 TrkA-C domain VEA_002054 PF02254 TrkA-N domain VEA_002055 PF01189 16S rRNA methyltransferase RsmB/F VEA_002055 PF01029 NusB family VEA_002056 PF00551 Formyl transferase VEA_002056 PF02911 Formyl transferase, C-terminal domain VEA_002057 PF01327 Polypeptide deformylase VEA_002059 PF02481 DNA recombination-mediator protein A VEA_002059 PF17782 DprA winged helix domain VEA_002060 PF04361 Protein of unknown function (DUF494) VEA_002062 PF01396 Topoisomerase DNA binding C4 zinc finger VEA_002063 PF02222 ATP-grasp domain VEA_002063 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VEA_002064 PF00731 AIR carboxylase VEA_002065 PF01300 Telomere recombination VEA_002066 PF01218 Coproporphyrinogen III oxidase VEA_002067 PF01488 Shikimate / quinate 5-dehydrogenase VEA_002067 PF08501 Shikimate dehydrogenase substrate binding domain VEA_002067 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VEA_002068 PF07369 Protein of unknown function (DUF1488) VEA_002069 PF00132 Bacterial transferase hexapeptide (six repeats) VEA_002070 PF00394 Multicopper oxidase VEA_002070 PF07732 Multicopper oxidase VEA_002070 PF07731 Multicopper oxidase VEA_002071 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VEA_002072 PF13667 ThiC-associated domain VEA_002072 PF01964 Radical SAM ThiC family VEA_002073 PF02581 Thiamine monophosphate synthase VEA_002074 PF00899 ThiF family VEA_002075 PF02597 ThiS family VEA_002076 PF05690 Thiazole biosynthesis protein ThiG VEA_002077 PF06968 Biotin and Thiamin Synthesis associated domain VEA_002077 PF04055 Radical SAM superfamily VEA_002078 PF00557 Metallopeptidase family M24 VEA_002078 PF01321 Creatinase/Prolidase N-terminal domain VEA_002078 PF00557 Metallopeptidase family M24 VEA_002078 PF01321 Creatinase/Prolidase N-terminal domain VEA_002079 PF03466 LysR substrate binding domain VEA_002079 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002080 PF07690 Major Facilitator Superfamily VEA_002084 PF05114 Protein of unknown function (DUF692) VEA_002086 PF13361 UvrD-like helicase C-terminal domain VEA_002086 PF00580 UvrD/REP helicase N-terminal domain VEA_002089 PF01810 LysE type translocator VEA_002091 PF00892 EamA-like transporter family VEA_002092 PF09382 RQC domain VEA_002092 PF00270 DEAD/DEAH box helicase VEA_002092 PF16124 RecQ zinc-binding VEA_002092 PF00570 HRDC domain VEA_002092 PF00271 Helicase conserved C-terminal domain VEA_002094 PF02592 Putative vitamin uptake transporter VEA_002095 PF02541 Ppx/GppA phosphatase family VEA_002096 PF00271 Helicase conserved C-terminal domain VEA_002096 PF00270 DEAD/DEAH box helicase VEA_002097 PF00085 Thioredoxin VEA_002098 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VEA_002098 PF07497 Rho termination factor, RNA-binding domain VEA_002098 PF07498 Rho termination factor, N-terminal domain VEA_002100 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VEA_002102 PF00175 Oxidoreductase NAD-binding domain VEA_002103 PF07219 HemY protein N-terminus VEA_002104 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VEA_002105 PF02602 Uroporphyrinogen-III synthase HemD VEA_002106 PF03900 Porphobilinogen deaminase, C-terminal domain VEA_002106 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VEA_002107 PF12633 Adenylate cyclase NT domain VEA_002107 PF01295 Adenylate cyclase, class-I VEA_002108 PF01491 Frataxin-like domain VEA_002110 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VEA_002110 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VEA_002111 PF01678 Diaminopimelate epimerase VEA_002113 PF00589 Phage integrase family VEA_002113 PF02899 Phage integrase, N-terminal SAM-like domain VEA_002114 PF13419 Haloacid dehalogenase-like hydrolase VEA_002115 PF00563 EAL domain VEA_002115 PF00990 Diguanylate cyclase, GGDEF domain VEA_002115 PF08495 FIST N domain VEA_002115 PF10442 FIST C domain VEA_002122 PF12146 Serine aminopeptidase, S33 VEA_002123 PF01810 LysE type translocator VEA_002124 PF00563 EAL domain VEA_002124 PF08668 HDOD domain VEA_002125 PF01022 Bacterial regulatory protein, arsR family VEA_002126 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VEA_002126 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VEA_002130 PF10694 Protein of unknown function (DUF2500) VEA_002135 PF01914 MarC family integral membrane protein VEA_002138 PF02881 SRP54-type protein, helical bundle domain VEA_002138 PF00448 SRP54-type protein, GTPase domain VEA_002139 PF00005 ABC transporter VEA_002140 PF18075 FtsX extracellular domain VEA_002141 PF00140 Sigma-70 factor, region 1.2 VEA_002141 PF04542 Sigma-70 region 2 VEA_002141 PF04545 Sigma-70, region 4 VEA_002142 PF00581 Rhodanese-like domain VEA_002143 PF01694 Rhomboid family VEA_002143 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VEA_002144 PF03748 Flagellar basal body-associated protein FliL VEA_002145 PF04345 Chorismate lyase VEA_002146 PF01040 UbiA prenyltransferase family VEA_002147 PF01553 Acyltransferase VEA_002149 PF00717 Peptidase S24-like VEA_002149 PF01726 LexA DNA binding domain VEA_002150 PF04072 Leucine carboxyl methyltransferase VEA_002151 PF01554 MatE VEA_002152 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_002152 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VEA_002153 PF00440 Bacterial regulatory proteins, tetR family VEA_002155 PF05958 tRNA (Uracil-5-)-methyltransferase VEA_002156 PF00593 TonB dependent receptor VEA_002156 PF07715 TonB-dependent Receptor Plug Domain VEA_002158 PF01177 Asp/Glu/Hydantoin racemase VEA_002160 PF13091 PLD-like domain VEA_002162 PF01565 FAD binding domain VEA_002162 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VEA_002163 PF08279 HTH domain VEA_002163 PF03099 Biotin/lipoate A/B protein ligase family VEA_002163 PF02237 Biotin protein ligase C terminal domain VEA_002164 PF00485 Phosphoribulokinase / Uridine kinase family VEA_002166 PF03143 Elongation factor Tu C-terminal domain VEA_002166 PF00009 Elongation factor Tu GTP binding domain VEA_002166 PF03144 Elongation factor Tu domain 2 VEA_002167 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VEA_002168 PF02357 Transcription termination factor nusG VEA_002168 PF00467 KOW motif VEA_002169 PF00298 Ribosomal protein L11, RNA binding domain VEA_002169 PF03946 Ribosomal protein L11, N-terminal domain VEA_002170 PF00687 Ribosomal protein L1p/L10e family VEA_002171 PF00466 Ribosomal protein L10 VEA_002172 PF16320 Ribosomal protein L7/L12 dimerisation domain VEA_002172 PF00542 Ribosomal protein L7/L12 C-terminal domain VEA_002173 PF04561 RNA polymerase Rpb2, domain 2 VEA_002173 PF04565 RNA polymerase Rpb2, domain 3 VEA_002173 PF10385 RNA polymerase beta subunit external 1 domain VEA_002173 PF00562 RNA polymerase Rpb2, domain 6 VEA_002173 PF04563 RNA polymerase beta subunit VEA_002173 PF04560 RNA polymerase Rpb2, domain 7 VEA_002174 PF04998 RNA polymerase Rpb1, domain 5 VEA_002174 PF04997 RNA polymerase Rpb1, domain 1 VEA_002174 PF05000 RNA polymerase Rpb1, domain 4 VEA_002174 PF00623 RNA polymerase Rpb1, domain 2 VEA_002174 PF04983 RNA polymerase Rpb1, domain 3 VEA_002175 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VEA_002176 PF09297 NADH pyrophosphatase zinc ribbon domain VEA_002176 PF00293 NUDIX domain VEA_002177 PF01208 Uroporphyrinogen decarboxylase (URO-D) VEA_002178 PF03167 Uracil DNA glycosylase superfamily VEA_002179 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VEA_002180 PF04222 Protein of unknown function (DUF416) VEA_002181 PF00571 CBS domain VEA_002181 PF01595 Cyclin M transmembrane N-terminal domain VEA_002182 PF00216 Bacterial DNA-binding protein VEA_002184 PF02843 Phosphoribosylglycinamide synthetase, C domain VEA_002184 PF02844 Phosphoribosylglycinamide synthetase, N domain VEA_002184 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VEA_002185 PF01808 AICARFT/IMPCHase bienzyme VEA_002185 PF02142 MGS-like domain VEA_002186 PF13411 MerR HTH family regulatory protein VEA_002187 PF18500 CadC C-terminal domain 1 VEA_002187 PF00486 Transcriptional regulatory protein, C terminal VEA_002188 PF13520 Amino acid permease VEA_002189 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VEA_002189 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VEA_002189 PF01276 Orn/Lys/Arg decarboxylase, major domain VEA_002191 PF12848 ABC transporter VEA_002191 PF00005 ABC transporter VEA_002193 PF02954 Bacterial regulatory protein, Fis family VEA_002194 PF01207 Dihydrouridine synthase (Dus) VEA_002196 PF00289 Biotin carboxylase, N-terminal domain VEA_002196 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VEA_002196 PF02785 Biotin carboxylase C-terminal domain VEA_002197 PF00364 Biotin-requiring enzyme VEA_002198 PF01220 Dehydroquinase class II VEA_002199 PF13193 AMP-binding enzyme C-terminal domain VEA_002199 PF00501 AMP-binding enzyme VEA_002199 PF16177 Acetyl-coenzyme A synthetase N-terminus VEA_002202 PF12832 MFS_1 like family VEA_002203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_002203 PF00512 His Kinase A (phospho-acceptor) domain VEA_002203 PF00072 Response regulator receiver domain VEA_002203 PF09308 LuxQ, periplasmic VEA_002204 PF10415 Fumarase C C-terminus VEA_002204 PF00206 Lyase VEA_002207 PF00474 Sodium:solute symporter family VEA_002210 PF02080 TrkA-C domain VEA_002210 PF00999 Sodium/hydrogen exchanger family VEA_002210 PF03471 Transporter associated domain VEA_002211 PF00196 Bacterial regulatory proteins, luxR family VEA_002211 PF00072 Response regulator receiver domain VEA_002212 PF11412 Disulphide bond corrector protein DsbC VEA_002212 PF02683 Cytochrome C biogenesis protein transmembrane region VEA_002213 PF03605 Anaerobic c4-dicarboxylate membrane transporter VEA_002214 PF00206 Lyase VEA_002214 PF10415 Fumarase C C-terminus VEA_002215 PF04186 FxsA cytoplasmic membrane protein VEA_002216 PF00588 SpoU rRNA Methylase family VEA_002217 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VEA_002217 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VEA_002218 PF00672 HAMP domain VEA_002218 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_002218 PF00512 His Kinase A (phospho-acceptor) domain VEA_002218 PF16527 Two-component sensor protein CpxA, periplasmic domain VEA_002219 PF00486 Transcriptional regulatory protein, C terminal VEA_002219 PF00072 Response regulator receiver domain VEA_002220 PF07813 LTXXQ motif family protein VEA_002221 PF01545 Cation efflux family VEA_002221 PF16916 Dimerisation domain of Zinc Transporter VEA_002222 PF00365 Phosphofructokinase VEA_002223 PF01554 MatE VEA_002224 PF00166 Chaperonin 10 Kd subunit VEA_002225 PF00118 TCP-1/cpn60 chaperonin family VEA_002227 PF00239 Resolvase, N terminal domain VEA_002227 PF02796 Helix-turn-helix domain of resolvase VEA_002230 PF02308 MgtC family VEA_002231 PF04055 Radical SAM superfamily VEA_002232 PF09285 Elongation factor P, C-terminal VEA_002232 PF01132 Elongation factor P (EF-P) OB domain VEA_002232 PF08207 Elongation factor P (EF-P) KOW-like domain VEA_002234 PF02313 Fumarate reductase subunit D VEA_002235 PF02300 Fumarate reductase subunit C VEA_002236 PF13085 2Fe-2S iron-sulfur cluster binding domain VEA_002236 PF13183 4Fe-4S dicluster domain VEA_002237 PF00890 FAD binding domain VEA_002237 PF02910 Fumarate reductase flavoprotein C-term VEA_002238 PF00152 tRNA synthetases class II (D, K and N) VEA_002240 PF00440 Bacterial regulatory proteins, tetR family VEA_002240 PF08360 QacR-like protein, C-terminal region VEA_002242 PF01551 Peptidase family M23 VEA_002243 PF00132 Bacterial transferase hexapeptide (six repeats) VEA_002243 PF06426 Serine acetyltransferase, N-terminal VEA_002244 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VEA_002244 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VEA_002245 PF02556 Preprotein translocase subunit SecB VEA_002246 PF00581 Rhodanese-like domain VEA_002247 PF01676 Metalloenzyme superfamily VEA_002247 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VEA_002249 PF02080 TrkA-C domain VEA_002249 PF03600 Citrate transporter VEA_002250 PF02666 Phosphatidylserine decarboxylase VEA_002251 PF03193 RsgA GTPase VEA_002252 PF00929 Exonuclease VEA_002253 PF08331 Domain of unknown function (DUF1730) VEA_002255 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VEA_002256 PF01520 N-acetylmuramoyl-L-alanine amidase VEA_002257 PF08676 MutL C terminal dimerisation domain VEA_002257 PF01119 DNA mismatch repair protein, C-terminal domain VEA_002259 PF17209 Hfq protein VEA_002260 PF13167 GTP-binding GTPase N-terminal VEA_002260 PF01926 50S ribosome-binding GTPase VEA_002260 PF16360 GTP-binding GTPase Middle Region VEA_002261 PF01145 SPFH domain / Band 7 family VEA_002261 PF12221 Bacterial membrane protein N terminal VEA_002262 PF01145 SPFH domain / Band 7 family VEA_002263 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VEA_002264 PF00709 Adenylosuccinate synthetase VEA_002265 PF08238 Sel1 repeat VEA_002266 PF00970 Oxidoreductase FAD-binding domain VEA_002266 PF00042 Globin VEA_002266 PF00175 Oxidoreductase NAD-binding domain VEA_002267 PF02082 Transcriptional regulator VEA_002268 PF17876 Cold shock domain VEA_002268 PF00773 RNB domain VEA_002268 PF00575 S1 RNA binding domain VEA_002268 PF08461 Ribonuclease R winged-helix domain VEA_002268 PF08206 Ribonuclease B OB domain VEA_002269 PF08032 RNA 2'-O ribose methyltransferase substrate binding VEA_002269 PF00588 SpoU rRNA Methylase family VEA_002270 PF13419 Haloacid dehalogenase-like hydrolase VEA_002271 PF00579 tRNA synthetases class I (W and Y) VEA_002275 PF00202 Aminotransferase class-III VEA_002276 PF04958 Arginine N-succinyltransferase beta subunit VEA_002277 PF00171 Aldehyde dehydrogenase family VEA_002279 PF00027 Cyclic nucleotide-binding domain VEA_002279 PF13545 Crp-like helix-turn-helix domain VEA_002280 PF00485 Phosphoribulokinase / Uridine kinase family VEA_002281 PF06794 Uncharacterised protein family (UPF0270) VEA_002282 PF00561 alpha/beta hydrolase fold VEA_002284 PF00005 ABC transporter VEA_002284 PF12848 ABC transporter VEA_002285 PF02525 Flavodoxin-like fold VEA_002286 PF00999 Sodium/hydrogen exchanger family VEA_002286 PF02254 TrkA-N domain VEA_002288 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VEA_002289 PF01112 Asparaginase VEA_002290 PF04102 SlyX VEA_002292 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VEA_002292 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VEA_002293 PF13309 HTH domain VEA_002293 PF08348 YheO-like PAS domain VEA_002294 PF02635 DsrE/DsrF-like family VEA_002295 PF02635 DsrE/DsrF-like family VEA_002296 PF04077 DsrH like protein VEA_002297 PF00164 Ribosomal protein S12/S23 VEA_002298 PF00177 Ribosomal protein S7p/S5e VEA_002299 PF03764 Elongation factor G, domain IV VEA_002299 PF00679 Elongation factor G C-terminus VEA_002299 PF14492 Elongation Factor G, domain II VEA_002299 PF03144 Elongation factor Tu domain 2 VEA_002299 PF00009 Elongation factor Tu GTP binding domain VEA_002300 PF00009 Elongation factor Tu GTP binding domain VEA_002300 PF03144 Elongation factor Tu domain 2 VEA_002300 PF03143 Elongation factor Tu C-terminal domain VEA_002302 PF00210 Ferritin-like domain VEA_002303 PF03949 Malic enzyme, NAD binding domain VEA_002303 PF00390 Malic enzyme, N-terminal domain VEA_002306 PF01053 Cys/Met metabolism PLP-dependent enzyme VEA_002307 PF00742 Homoserine dehydrogenase VEA_002307 PF00696 Amino acid kinase family VEA_002307 PF03447 Homoserine dehydrogenase, NAD binding domain VEA_002308 PF02219 Methylenetetrahydrofolate reductase VEA_002310 PF00311 Phosphoenolpyruvate carboxylase VEA_002311 PF07687 Peptidase dimerisation domain VEA_002311 PF01546 Peptidase family M20/M25/M40 VEA_002312 PF01118 Semialdehyde dehydrogenase, NAD binding domain VEA_002312 PF02774 Semialdehyde dehydrogenase, dimerisation domain VEA_002313 PF00696 Amino acid kinase family VEA_002314 PF00764 Arginosuccinate synthase VEA_002315 PF00206 Lyase VEA_002315 PF14698 Argininosuccinate lyase C-terminal VEA_002315 PF00583 Acetyltransferase (GNAT) family VEA_002318 PF00403 Heavy-metal-associated domain VEA_002318 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_002318 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VEA_002319 PF08534 Redoxin VEA_002319 PF00462 Glutaredoxin VEA_002320 PF03466 LysR substrate binding domain VEA_002320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002321 PF00905 Penicillin binding protein transpeptidase domain VEA_002321 PF00912 Transglycosylase VEA_002321 PF17092 Penicillin-binding protein OB-like domain VEA_002326 PF07660 Secretin and TonB N terminus short domain VEA_002326 PF03958 Bacterial type II/III secretion system short domain VEA_002326 PF00263 Bacterial type II and III secretion system protein VEA_002326 PF11741 AMIN domain VEA_002327 PF01202 Shikimate kinase VEA_002328 PF01761 3-dehydroquinate synthase VEA_002330 PF02086 D12 class N6 adenine-specific DNA methyltransferase VEA_002331 PF00834 Ribulose-phosphate 3 epimerase family VEA_002332 PF01250 Ribosomal protein S6 VEA_002333 PF00436 Single-strand binding protein family VEA_002334 PF01084 Ribosomal protein S18 VEA_002335 PF01281 Ribosomal protein L9, N-terminal domain VEA_002335 PF03948 Ribosomal protein L9, C-terminal domain VEA_002337 PF00772 DnaB-like helicase N terminal domain VEA_002337 PF03796 DnaB-like helicase C terminal domain VEA_002338 PF00842 Alanine racemase, C-terminal domain VEA_002338 PF01168 Alanine racemase, N-terminal domain VEA_002339 PF01894 Uncharacterised protein family UPF0047 VEA_002341 PF00342 Phosphoglucose isomerase VEA_002343 PF01475 Ferric uptake regulator family VEA_002346 PF01207 Dihydrouridine synthase (Dus) VEA_002350 PF00258 Flavodoxin VEA_002350 PF00667 FAD binding domain VEA_002350 PF00175 Oxidoreductase NAD-binding domain VEA_002351 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VEA_002351 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VEA_002352 PF01507 Phosphoadenosine phosphosulfate reductase family VEA_002354 PF00999 Sodium/hydrogen exchanger family VEA_002355 PF02607 B12 binding domain VEA_002355 PF02965 Vitamin B12 dependent methionine synthase, activation domain VEA_002355 PF00809 Pterin binding enzyme VEA_002355 PF02574 Homocysteine S-methyltransferase VEA_002355 PF02310 B12 binding domain VEA_002356 PF01842 ACT domain VEA_002356 PF00696 Amino acid kinase family VEA_002358 PF00266 Aminotransferase class-V VEA_002360 PF17755 UvrA DNA-binding domain VEA_002360 PF17760 UvrA interaction domain VEA_002360 PF00005 ABC transporter VEA_002361 PF00483 Nucleotidyl transferase VEA_002362 PF00196 Bacterial regulatory proteins, luxR family VEA_002363 PF00436 Single-strand binding protein family VEA_002364 PF17157 Gammaproteobacterial periplasmic sensor domain VEA_002364 PF00563 EAL domain VEA_002364 PF00990 Diguanylate cyclase, GGDEF domain VEA_002368 PF00263 Bacterial type II and III secretion system protein VEA_002368 PF03958 Bacterial type II/III secretion system short domain VEA_002369 PF13401 AAA domain VEA_002369 PF01471 Putative peptidoglycan binding domain VEA_002371 PF00437 Type II/IV secretion system protein VEA_002371 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VEA_002372 PF00482 Type II secretion system (T2SS), protein F VEA_002375 PF00114 Pilin (bacterial filament) VEA_002375 PF07963 Prokaryotic N-terminal methylation motif VEA_002384 PF04085 rod shape-determining protein MreC VEA_002385 PF04093 rod shape-determining protein MreD VEA_002386 PF02545 Maf-like protein VEA_002387 PF10150 Ribonuclease E/G family VEA_002387 PF00575 S1 RNA binding domain VEA_002388 PF13502 AsmA-like C-terminal region VEA_002388 PF13116 Protein of unknown function VEA_002389 PF00795 Carbon-nitrogen hydrolase VEA_002390 PF01523 Putative modulator of DNA gyrase VEA_002391 PF02562 PhoH-like protein VEA_002391 PF13638 PIN domain VEA_002392 PF12137 RNA polymerase recycling family C-terminal VEA_002392 PF00176 SNF2 family N-terminal domain VEA_002392 PF18339 RapA N-terminal Tudor like domain 1 VEA_002392 PF18337 RapA N-terminal Tudor like domain VEA_002392 PF00271 Helicase conserved C-terminal domain VEA_002394 PF00849 RNA pseudouridylate synthase VEA_002395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VEA_002395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VEA_002396 PF04751 Protein of unknown function (DUF615) VEA_002397 PF01523 Putative modulator of DNA gyrase VEA_002398 PF01769 Divalent cation transporter VEA_002398 PF03448 MgtE intracellular N domain VEA_002398 PF00571 CBS domain VEA_002399 PF00381 PTS HPr component phosphorylation site VEA_002400 PF03668 P-loop ATPase protein family VEA_002401 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VEA_002402 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VEA_002403 PF04552 Sigma-54, DNA binding domain VEA_002403 PF04963 Sigma-54 factor, core binding domain VEA_002403 PF00309 Sigma-54 factor, Activator interacting domain (AID) VEA_002404 PF00005 ABC transporter VEA_002404 PF12399 Branched-chain amino acid ATP-binding cassette transporter VEA_002405 PF03968 OstA-like protein VEA_002407 PF00571 CBS domain VEA_002407 PF01380 SIS domain VEA_002408 PF01699 Sodium/calcium exchanger protein VEA_002409 PF00005 ABC transporter VEA_002410 PF02405 Permease MlaE VEA_002411 PF02470 MlaD protein VEA_002412 PF05494 MlaC protein VEA_002414 PF01722 BolA-like protein VEA_002415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VEA_002416 PF01553 Acyltransferase VEA_002417 PF01042 Endoribonuclease L-PSP VEA_002418 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VEA_002418 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VEA_002419 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VEA_002419 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VEA_002420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VEA_002420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VEA_002422 PF06877 Regulator of ribonuclease activity B VEA_002424 PF00583 Acetyltransferase (GNAT) family VEA_002426 PF00133 tRNA synthetases class I (I, L, M and V) VEA_002426 PF10458 Valyl tRNA synthetase tRNA binding arm VEA_002426 PF08264 Anticodon-binding domain of tRNA VEA_002427 PF04364 DNA polymerase III chi subunit, HolC VEA_002428 PF02789 Cytosol aminopeptidase family, N-terminal domain VEA_002428 PF00883 Cytosol aminopeptidase family, catalytic domain VEA_002429 PF03739 Lipopolysaccharide export system permease LptF/LptG VEA_002430 PF03739 Lipopolysaccharide export system permease LptF/LptG VEA_002432 PF10011 Predicted membrane protein (DUF2254) VEA_002434 PF01522 Polysaccharide deacetylase VEA_002436 PF02378 Phosphotransferase system, EIIC VEA_002437 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VEA_002438 PF02056 Family 4 glycosyl hydrolase VEA_002438 PF11975 Family 4 glycosyl hydrolase C-terminal domain VEA_002439 PF04794 YdjC-like protein VEA_002440 PF00356 Bacterial regulatory proteins, lacI family VEA_002440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VEA_002442 PF00171 Aldehyde dehydrogenase family VEA_002443 PF00672 HAMP domain VEA_002443 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_002443 PF17200 Single Cache domain 2 VEA_002444 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VEA_002444 PF01464 Transglycosylase SLT domain VEA_002445 PF04362 Bacterial Fe(2+) trafficking VEA_002446 PF14815 NUDIX domain VEA_002446 PF00730 HhH-GPD superfamily base excision DNA repair protein VEA_002446 PF00633 Helix-hairpin-helix motif VEA_002447 PF02390 Putative methyltransferase VEA_002448 PF02086 D12 class N6 adenine-specific DNA methyltransferase VEA_002449 PF04960 Glutaminase VEA_002450 PF04055 Radical SAM superfamily VEA_002450 PF06969 HemN C-terminal domain VEA_002451 PF01725 Ham1 family VEA_002453 PF02594 Uncharacterised ACR, YggU family COG1872 VEA_002454 PF02325 YGGT family VEA_002455 PF03807 NADP oxidoreductase coenzyme F420-dependent VEA_002455 PF14748 Pyrroline-5-carboxylate reductase dimerisation VEA_002457 PF01168 Alanine racemase, N-terminal domain VEA_002458 PF00437 Type II/IV secretion system protein VEA_002459 PF00437 Type II/IV secretion system protein VEA_002460 PF03652 Holliday junction resolvase VEA_002461 PF02622 Uncharacterized ACR, COG1678 VEA_002462 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VEA_002462 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VEA_002463 PF04452 RNA methyltransferase VEA_002464 PF04231 Endonuclease I VEA_002465 PF10263 SprT-like family VEA_002465 PF17283 SprT-like zinc ribbon domain VEA_002467 PF02772 S-adenosylmethionine synthetase, central domain VEA_002467 PF00438 S-adenosylmethionine synthetase, N-terminal domain VEA_002467 PF02773 S-adenosylmethionine synthetase, C-terminal domain VEA_002468 PF00456 Transketolase, thiamine diphosphate binding domain VEA_002468 PF02779 Transketolase, pyrimidine binding domain VEA_002468 PF02780 Transketolase, C-terminal domain VEA_002469 PF03466 LysR substrate binding domain VEA_002469 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002470 PF00593 TonB dependent receptor VEA_002470 PF07715 TonB-dependent Receptor Plug Domain VEA_002471 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VEA_002471 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VEA_002472 PF00162 Phosphoglycerate kinase VEA_002473 PF01116 Fructose-bisphosphate aldolase class-II VEA_002474 PF00924 Mechanosensitive ion channel VEA_002474 PF05552 Conserved TM helix VEA_002476 PF01810 LysE type translocator VEA_002477 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002477 PF03466 LysR substrate binding domain VEA_002478 PF04402 Protein of unknown function (DUF541) VEA_002479 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VEA_002479 PF01842 ACT domain VEA_002479 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VEA_002480 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VEA_002481 PF01812 5-formyltetrahydrofolate cyclo-ligase family VEA_002482 PF05164 Cell division protein ZapA VEA_002483 PF03695 Uncharacterised protein family (UPF0149) VEA_002484 PF01494 FAD binding domain VEA_002485 PF01494 FAD binding domain VEA_002488 PF01571 Aminomethyltransferase folate-binding domain VEA_002489 PF03937 Flavinator of succinate dehydrogenase VEA_002490 PF00890 FAD binding domain VEA_002490 PF02910 Fumarate reductase flavoprotein C-term VEA_002491 PF08281 Sigma-70, region 4 VEA_002491 PF04542 Sigma-70 region 2 VEA_002492 PF03872 Anti sigma-E protein RseA, N-terminal domain VEA_002492 PF03873 Anti sigma-E protein RseA, C-terminal domain VEA_002493 PF03888 MucB/RseB N-terminal domain VEA_002493 PF17188 MucB/RseB C-terminal domain VEA_002495 PF00009 Elongation factor Tu GTP binding domain VEA_002495 PF03144 Elongation factor Tu domain 2 VEA_002495 PF06421 GTP-binding protein LepA C-terminus VEA_002495 PF00679 Elongation factor G C-terminus VEA_002496 PF10502 Signal peptidase, peptidase S26 VEA_002497 PF00035 Double-stranded RNA binding motif VEA_002497 PF14622 Ribonuclease-III-like VEA_002498 PF07650 KH domain VEA_002498 PF01926 50S ribosome-binding GTPase VEA_002499 PF11967 Recombination protein O N terminal VEA_002499 PF02565 Recombination protein O C terminal VEA_002500 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VEA_002501 PF01648 4'-phosphopantetheinyl transferase superfamily VEA_002502 PF01627 Hpt domain VEA_002502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_002502 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VEA_002502 PF00072 Response regulator receiver domain VEA_002502 PF00512 His Kinase A (phospho-acceptor) domain VEA_002502 PF00672 HAMP domain VEA_002503 PF01938 TRAM domain VEA_002503 PF05958 tRNA (Uracil-5-)-methyltransferase VEA_002504 PF02824 TGS domain VEA_002504 PF13291 ACT domain VEA_002504 PF04607 Region found in RelA / SpoT proteins VEA_002505 PF03819 MazG nucleotide pyrophosphohydrolase domain VEA_002506 PF06418 CTP synthase N-terminus VEA_002506 PF00117 Glutamine amidotransferase class-I VEA_002507 PF03952 Enolase, N-terminal domain VEA_002507 PF00113 Enolase, C-terminal TIM barrel domain VEA_002509 PF04977 Septum formation initiator VEA_002510 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VEA_002511 PF02542 YgbB family VEA_002512 PF01142 tRNA pseudouridine synthase D (TruD) VEA_002513 PF01975 Survival protein SurE VEA_002515 PF01551 Peptidase family M23 VEA_002515 PF01476 LysM domain VEA_002516 PF04539 Sigma-70 region 3 VEA_002516 PF04542 Sigma-70 region 2 VEA_002516 PF00140 Sigma-70 factor, region 1.2 VEA_002516 PF04545 Sigma-70, region 4 VEA_002517 PF01624 MutS domain I VEA_002517 PF05190 MutS family domain IV VEA_002517 PF05188 MutS domain II VEA_002517 PF00488 MutS domain V VEA_002517 PF05192 MutS domain III VEA_002518 PF02464 Competence-damaged protein VEA_002519 PF00154 recA bacterial DNA recombination protein VEA_002520 PF02631 RecX family VEA_002521 PF01411 tRNA synthetases class II (A) VEA_002521 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VEA_002521 PF02272 DHHA1 domain VEA_002522 PF01842 ACT domain VEA_002522 PF13840 ACT domain VEA_002522 PF00696 Amino acid kinase family VEA_002523 PF02599 Global regulator protein family VEA_002524 PF04277 Oxaloacetate decarboxylase, gamma chain VEA_002525 PF00682 HMGL-like VEA_002525 PF00364 Biotin-requiring enzyme VEA_002525 PF02436 Conserved carboxylase domain VEA_002526 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VEA_002528 PF09335 SNARE associated Golgi protein VEA_002529 PF00675 Insulinase (Peptidase family M16) VEA_002529 PF05193 Peptidase M16 inactive domain VEA_002530 PF04262 Glutamate-cysteine ligase VEA_002532 PF02664 S-Ribosylhomocysteinase (LuxS) VEA_002533 PF00571 CBS domain VEA_002533 PF01595 Cyclin M transmembrane N-terminal domain VEA_002533 PF03471 Transporter associated domain VEA_002534 PF01578 Cytochrome C assembly protein VEA_002535 PF02978 Signal peptide binding domain VEA_002535 PF02881 SRP54-type protein, helical bundle domain VEA_002535 PF00448 SRP54-type protein, GTPase domain VEA_002536 PF00886 Ribosomal protein S16 VEA_002537 PF01782 RimM N-terminal domain VEA_002537 PF05239 PRC-barrel domain VEA_002538 PF01746 tRNA (Guanine-1)-methyltransferase VEA_002539 PF01245 Ribosomal protein L19 VEA_002540 PF03884 DNA gyrase inhibitor YacG VEA_002541 PF07072 Cell division protein VEA_002542 PF01121 Dephospho-CoA kinase VEA_002543 PF01478 Type IV leader peptidase family VEA_002543 PF06750 Bacterial Peptidase A24 N-terminal domain VEA_002544 PF00482 Type II secretion system (T2SS), protein F VEA_002545 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VEA_002545 PF00437 Type II/IV secretion system protein VEA_002546 PF07963 Prokaryotic N-terminal methylation motif VEA_002547 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VEA_002547 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VEA_002548 PF01510 N-acetylmuramoyl-L-alanine amidase VEA_002549 PF00392 Bacterial regulatory proteins, gntR family VEA_002549 PF07729 FCD domain VEA_002550 PF17831 Pyruvate dehydrogenase E1 component middle domain VEA_002550 PF00456 Transketolase, thiamine diphosphate binding domain VEA_002551 PF02817 e3 binding domain VEA_002551 PF00364 Biotin-requiring enzyme VEA_002551 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VEA_002552 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VEA_002552 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_002553 PF00440 Bacterial regulatory proteins, tetR family VEA_002554 PF00156 Phosphoribosyl transferase domain VEA_002555 PF00484 Carbonic anhydrase VEA_002556 PF00916 Sulfate permease family VEA_002556 PF01740 STAS domain VEA_002557 PF00005 ABC transporter VEA_002558 PF01061 ABC-2 type transporter VEA_002559 PF03279 Bacterial lipid A biosynthesis acyltransferase VEA_002560 PF02569 Pantoate-beta-alanine ligase VEA_002561 PF02548 Ketopantoate hydroxymethyltransferase VEA_002562 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VEA_002563 PF12627 Probable RNA and SrmB- binding site of polymerase A VEA_002563 PF01743 Poly A polymerase head domain VEA_002563 PF12626 Polymerase A arginine-rich C-terminus VEA_002564 PF00749 tRNA synthetases class I (E and Q), catalytic domain VEA_002565 PF01258 Prokaryotic dksA/traR C4-type zinc finger VEA_002566 PF03749 Sugar fermentation stimulation protein RE domain VEA_002566 PF17746 SfsA N-terminal OB domain VEA_002567 PF00270 DEAD/DEAH box helicase VEA_002567 PF08482 ATP-dependent helicase C-terminal VEA_002567 PF00271 Helicase conserved C-terminal domain VEA_002567 PF04408 Helicase associated domain (HA2) VEA_002568 PF00912 Transglycosylase VEA_002568 PF00905 Penicillin binding protein transpeptidase domain VEA_002568 PF14814 Bifunctional transglycosylase second domain VEA_002569 PF01734 Patatin-like phospholipase VEA_002570 PF11791 Aconitate B N-terminal domain VEA_002570 PF06434 Aconitate hydratase 2 N-terminus VEA_002570 PF00330 Aconitase family (aconitate hydratase) VEA_002571 PF06062 Uncharacterised protein family (UPF0231) VEA_002572 PF00543 Nitrogen regulatory protein P-II VEA_002573 PF00909 Ammonium Transporter Family VEA_002574 PF13416 Bacterial extracellular solute-binding protein VEA_002576 PF08402 TOBE domain VEA_002576 PF00005 ABC transporter VEA_002577 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VEA_002577 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VEA_002577 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VEA_002578 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VEA_002578 PF06165 Glycosyltransferase family 36 VEA_002579 PF00728 Glycosyl hydrolase family 20, catalytic domain VEA_002579 PF02838 Glycosyl hydrolase family 20, domain 2 VEA_002580 PF01869 BadF/BadG/BcrA/BcrD ATPase family VEA_002582 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_002582 PF00005 ABC transporter VEA_002583 PF00005 ABC transporter VEA_002583 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_002585 PF00528 Binding-protein-dependent transport system inner membrane component VEA_002586 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_002587 PF00072 Response regulator receiver domain VEA_002587 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_002587 PF09308 LuxQ, periplasmic VEA_002587 PF00512 His Kinase A (phospho-acceptor) domain VEA_002588 PF08468 Methyltransferase small domain N-terminal VEA_002588 PF05175 Methyltransferase small domain VEA_002589 PF01594 AI-2E family transporter VEA_002591 PF00202 Aminotransferase class-III VEA_002592 PF01521 Iron-sulphur cluster biosynthesis VEA_002594 PF00873 AcrB/AcrD/AcrF family VEA_002595 PF01551 Peptidase family M23 VEA_002595 PF08525 Opacity-associated protein A N-terminal motif VEA_002595 PF01476 LysM domain VEA_002596 PF00579 tRNA synthetases class I (W and Y) VEA_002598 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VEA_002599 PF13609 Gram-negative porin VEA_002600 PF01272 Transcription elongation factor, GreA/GreB, C-term VEA_002600 PF03449 Transcription elongation factor, N-terminal VEA_002601 PF01985 CRS1 / YhbY (CRM) domain VEA_002602 PF01728 FtsJ-like methyltransferase VEA_002603 PF17862 AAA+ lid domain VEA_002603 PF01434 Peptidase family M41 VEA_002603 PF06480 FtsH Extracellular VEA_002603 PF00004 ATPase family associated with various cellular activities (AAA) VEA_002604 PF00809 Pterin binding enzyme VEA_002605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VEA_002605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VEA_002605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VEA_002605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VEA_002606 PF03840 Preprotein translocase SecG subunit VEA_002607 PF17384 RimP C-terminal SH3 domain VEA_002607 PF02576 RimP N-terminal domain VEA_002608 PF08529 NusA N-terminal domain VEA_002608 PF13184 NusA-like KH domain VEA_002608 PF00575 S1 RNA binding domain VEA_002609 PF04760 Translation initiation factor IF-2, N-terminal region VEA_002609 PF08364 Bacterial translation initiation factor IF-2 associated region VEA_002609 PF11987 Translation-initiation factor 2 VEA_002609 PF00009 Elongation factor Tu GTP binding domain VEA_002610 PF02033 Ribosome-binding factor A VEA_002611 PF09157 Pseudouridine synthase II TruB, C-terminal VEA_002611 PF01509 TruB family pseudouridylate synthase (N terminal domain) VEA_002611 PF16198 tRNA pseudouridylate synthase B C-terminal domain VEA_002612 PF00312 Ribosomal protein S15 VEA_002613 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VEA_002613 PF00575 S1 RNA binding domain VEA_002613 PF00013 KH domain VEA_002613 PF01138 3' exoribonuclease family, domain 1 VEA_002613 PF03725 3' exoribonuclease family, domain 2 VEA_002614 PF07719 Tetratricopeptide repeat VEA_002614 PF13181 Tetratricopeptide repeat VEA_002616 PF01554 MatE VEA_002619 PF03707 Bacterial signalling protein N terminal repeat VEA_002619 PF00990 Diguanylate cyclase, GGDEF domain VEA_002619 PF00563 EAL domain VEA_002621 PF13508 Acetyltransferase (GNAT) domain VEA_002625 PF16658 Class II release factor RF3, C-terminal domain VEA_002625 PF03144 Elongation factor Tu domain 2 VEA_002625 PF00009 Elongation factor Tu GTP binding domain VEA_002627 PF01026 TatD related DNase VEA_002628 PF01773 Na+ dependent nucleoside transporter N-terminus VEA_002628 PF07662 Na+ dependent nucleoside transporter C-terminus VEA_002628 PF07670 Nucleoside recognition VEA_002629 PF01791 DeoC/LacD family aldolase VEA_002630 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VEA_002630 PF00591 Glycosyl transferase family, a/b domain VEA_002630 PF02885 Glycosyl transferase family, helical bundle domain VEA_002631 PF01676 Metalloenzyme superfamily VEA_002632 PF01048 Phosphorylase superfamily VEA_002634 PF18429 Domain of unknown function (DUF5609) VEA_002636 PF18073 Rubredoxin metal binding domain VEA_002637 PF00679 Elongation factor G C-terminus VEA_002637 PF03144 Elongation factor Tu domain 2 VEA_002637 PF03764 Elongation factor G, domain IV VEA_002637 PF14492 Elongation Factor G, domain II VEA_002637 PF00009 Elongation factor Tu GTP binding domain VEA_002638 PF03466 LysR substrate binding domain VEA_002638 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002639 PF00501 AMP-binding enzyme VEA_002640 PF12833 Helix-turn-helix domain VEA_002640 PF02805 Metal binding domain of Ada VEA_002644 PF13629 Pilus formation protein N terminal region VEA_002644 PF04972 BON domain VEA_002644 PF00263 Bacterial type II and III secretion system protein VEA_002649 PF00437 Type II/IV secretion system protein VEA_002655 PF03466 LysR substrate binding domain VEA_002655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002656 PF13520 Amino acid permease VEA_002657 PF04074 YhcH/YjgK/YiaL VEA_002658 PF02837 Glycosyl hydrolases family 2, sugar binding domain VEA_002658 PF02929 Beta galactosidase small chain VEA_002658 PF16353 Domain of unknown function(DUF4981) VEA_002658 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VEA_002658 PF00703 Glycosyl hydrolases family 2 VEA_002659 PF00356 Bacterial regulatory proteins, lacI family VEA_002660 PF16363 GDP-mannose 4,6 dehydratase VEA_002661 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VEA_002661 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VEA_002662 PF00288 GHMP kinases N terminal domain VEA_002662 PF08544 GHMP kinases C terminal VEA_002662 PF10509 Galactokinase galactose-binding signature VEA_002663 PF01263 Aldose 1-epimerase VEA_002664 PF00356 Bacterial regulatory proteins, lacI family VEA_002667 PF00356 Bacterial regulatory proteins, lacI family VEA_002668 PF01588 Putative tRNA binding domain VEA_002672 PF01544 CorA-like Mg2+ transporter protein VEA_002673 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VEA_002673 PF01266 FAD dependent oxidoreductase VEA_002674 PF00455 DeoR C terminal sensor domain VEA_002674 PF08220 DeoR-like helix-turn-helix domain VEA_002675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VEA_002675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VEA_002676 PF00230 Major intrinsic protein VEA_002677 PF07690 Major Facilitator Superfamily VEA_002678 PF03009 Glycerophosphoryl diester phosphodiesterase family VEA_002679 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VEA_002679 PF14602 Hexapeptide repeat of succinyl-transferase VEA_002680 PF07130 YebG protein VEA_002681 PF03466 LysR substrate binding domain VEA_002681 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002683 PF11893 Domain of unknown function (DUF3413) VEA_002683 PF00884 Sulfatase VEA_002684 PF17946 RecC C-terminal domain VEA_002685 PF13361 UvrD-like helicase C-terminal domain VEA_002685 PF12705 PD-(D/E)XK nuclease superfamily VEA_002685 PF00580 UvrD/REP helicase N-terminal domain VEA_002686 PF13538 UvrD-like helicase C-terminal domain VEA_002688 PF00696 Amino acid kinase family VEA_002688 PF00583 Acetyltransferase (GNAT) family VEA_002690 PF06725 3D domain VEA_002690 PF03562 MltA specific insert domain VEA_002691 PF00899 ThiF family VEA_002692 PF02657 Fe-S metabolism associated domain VEA_002693 PF00990 Diguanylate cyclase, GGDEF domain VEA_002693 PF17158 Membrane-associated sensor, integral membrane domain VEA_002694 PF00266 Aminotransferase class-V VEA_002695 PF01965 DJ-1/PfpI family VEA_002696 PF08546 Ketopantoate reductase PanE/ApbA C terminal VEA_002696 PF02558 Ketopantoate reductase PanE/ApbA VEA_002697 PF03502 Nucleoside-specific channel-forming protein, Tsx VEA_002700 PF04542 Sigma-70 region 2 VEA_002700 PF04545 Sigma-70, region 4 VEA_002702 PF07690 Major Facilitator Superfamily VEA_002703 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VEA_002704 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VEA_002704 PF03923 Uncharacterized lipoprotein VEA_002705 PF05175 Methyltransferase small domain VEA_002706 PF01722 BolA-like protein VEA_002707 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VEA_002707 PF11973 NQRA C-terminal domain VEA_002708 PF03116 NQR2, RnfD, RnfE family VEA_002709 PF04205 FMN-binding domain VEA_002710 PF02508 Rnf-Nqr subunit, membrane protein VEA_002711 PF02508 Rnf-Nqr subunit, membrane protein VEA_002712 PF00111 2Fe-2S iron-sulfur cluster binding domain VEA_002712 PF00175 Oxidoreductase NAD-binding domain VEA_002712 PF00970 Oxidoreductase FAD-binding domain VEA_002713 PF02424 ApbE family VEA_002716 PF11799 impB/mucB/samB family C-terminal domain VEA_002716 PF00817 impB/mucB/samB family VEA_002716 PF11798 IMS family HHH motif VEA_002717 PF09382 RQC domain VEA_002717 PF00570 HRDC domain VEA_002717 PF00271 Helicase conserved C-terminal domain VEA_002717 PF16124 RecQ zinc-binding VEA_002717 PF00270 DEAD/DEAH box helicase VEA_002718 PF01272 Transcription elongation factor, GreA/GreB, C-term VEA_002718 PF03449 Transcription elongation factor, N-terminal VEA_002720 PF00704 Glycosyl hydrolases family 18 VEA_002720 PF06483 Chitinase C VEA_002721 PF00209 Sodium:neurotransmitter symporter family VEA_002723 PF06786 Uncharacterised protein family (UPF0253) VEA_002725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VEA_002725 PF03129 Anticodon binding domain VEA_002725 PF04073 Aminoacyl-tRNA editing domain VEA_002726 PF18389 TrmO C-terminal domain VEA_002726 PF01980 tRNA-methyltransferase O VEA_002727 PF01197 Ribosomal protein L31 VEA_002728 PF00444 Ribosomal protein L36 VEA_002729 PF03806 AbgT putative transporter family VEA_002734 PF01370 NAD dependent epimerase/dehydratase family VEA_002735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VEA_002735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VEA_002736 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VEA_002741 PF00849 RNA pseudouridylate synthase VEA_002741 PF04287 tRNA pseudouridine synthase C VEA_002742 PF00849 RNA pseudouridylate synthase VEA_002743 PF11944 Protein of unknown function (DUF3461) VEA_002744 PF08335 GlnD PII-uridylyltransferase VEA_002744 PF01966 HD domain VEA_002744 PF01909 Nucleotidyltransferase domain VEA_002744 PF01842 ACT domain VEA_002745 PF00557 Metallopeptidase family M24 VEA_002746 PF00318 Ribosomal protein S2 VEA_002747 PF00889 Elongation factor TS VEA_002748 PF00696 Amino acid kinase family VEA_002749 PF01765 Ribosome recycling factor VEA_002750 PF01255 Putative undecaprenyl diphosphate synthase VEA_002752 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VEA_002752 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VEA_002752 PF13288 DXP reductoisomerase C-terminal domain VEA_002753 PF02163 Peptidase family M50 VEA_002753 PF17820 PDZ domain VEA_002754 PF01103 Surface antigen VEA_002754 PF07244 Surface antigen variable number repeat VEA_002755 PF03938 Outer membrane protein (OmpH-like) VEA_002756 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VEA_002756 PF00132 Bacterial transferase hexapeptide (six repeats) VEA_002758 PF07977 FabA-like domain VEA_002759 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VEA_002759 PF00132 Bacterial transferase hexapeptide (six repeats) VEA_002760 PF02684 Lipid-A-disaccharide synthetase VEA_002761 PF01351 Ribonuclease HII VEA_002762 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VEA_002762 PF14579 Helix-hairpin-helix motif VEA_002762 PF01336 OB-fold nucleic acid binding domain VEA_002762 PF07733 Bacterial DNA polymerase III alpha NTPase domain VEA_002762 PF02811 PHP domain VEA_002763 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VEA_002764 PF11734 TilS substrate C-terminal domain VEA_002764 PF01171 PP-loop family VEA_002764 PF09179 TilS substrate binding domain VEA_002765 PF00034 Cytochrome c VEA_002766 PF00543 Nitrogen regulatory protein P-II VEA_002767 PF03372 Endonuclease/Exonuclease/phosphatase family VEA_002769 PF01464 Transglycosylase SLT domain VEA_002769 PF01476 LysM domain VEA_002770 PF16123 Hydroxyacylglutathione hydrolase C-terminus VEA_002770 PF00753 Metallo-beta-lactamase superfamily VEA_002771 PF08241 Methyltransferase domain VEA_002772 PF00075 RNase H VEA_002773 PF00929 Exonuclease VEA_002776 PF01740 STAS domain VEA_002776 PF00916 Sulfate permease family VEA_002777 PF09317 Domain of unknown function (DUF1974) VEA_002777 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VEA_002777 PF02770 Acyl-CoA dehydrogenase, middle domain VEA_002777 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VEA_002778 PF13580 SIS domain VEA_002779 PF13230 Glutamine amidotransferases class-II VEA_002780 PF00551 Formyl transferase VEA_002781 PF00586 AIR synthase related protein, N-terminal domain VEA_002781 PF02769 AIR synthase related protein, C-terminal domain VEA_002783 PF00860 Permease family VEA_002786 PF03358 NADPH-dependent FMN reductase VEA_002787 PF03960 ArsC family VEA_002788 PF01435 Peptidase family M48 VEA_002788 PF13181 Tetratricopeptide repeat VEA_002790 PF01594 AI-2E family transporter VEA_002791 PF00578 AhpC/TSA family VEA_002793 PF00701 Dihydrodipicolinate synthetase family VEA_002797 PF01546 Peptidase family M20/M25/M40 VEA_002797 PF07687 Peptidase dimerisation domain VEA_002798 PF03960 ArsC family VEA_002802 PF11143 Protein of unknown function (DUF2919) VEA_002803 PF04261 Dyp-type peroxidase family VEA_002804 PF00669 Bacterial flagellin N-terminal helical region VEA_002804 PF00700 Bacterial flagellin C-terminal helical region VEA_002804 PF07196 Flagellin hook IN motif VEA_002805 PF07196 Flagellin hook IN motif VEA_002805 PF00669 Bacterial flagellin N-terminal helical region VEA_002805 PF00700 Bacterial flagellin C-terminal helical region VEA_002806 PF00669 Bacterial flagellin N-terminal helical region VEA_002806 PF00700 Bacterial flagellin C-terminal helical region VEA_002806 PF07196 Flagellin hook IN motif VEA_002807 PF03646 FlaG protein VEA_002808 PF07195 Flagellar hook-associated protein 2 C-terminus VEA_002808 PF02465 Flagellar hook-associated protein 2 N-terminus VEA_002808 PF07196 Flagellin hook IN motif VEA_002810 PF02561 Flagellar protein FliS VEA_002811 PF01590 GAF domain VEA_002811 PF00158 Sigma-54 interaction domain VEA_002811 PF02954 Bacterial regulatory protein, Fis family VEA_002812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_002812 PF00512 His Kinase A (phospho-acceptor) domain VEA_002813 PF00072 Response regulator receiver domain VEA_002813 PF00158 Sigma-54 interaction domain VEA_002813 PF02954 Bacterial regulatory protein, Fis family VEA_002814 PF02049 Flagellar hook-basal body complex protein FliE VEA_002815 PF01514 Secretory protein of YscJ/FliF family VEA_002815 PF08345 Flagellar M-ring protein C-terminal VEA_002816 PF14842 FliG N-terminal domain VEA_002816 PF14841 FliG middle domain VEA_002816 PF01706 FliG C-terminal domain VEA_002818 PF18269 T3SS EscN ATPase C-terminal domain VEA_002818 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VEA_002822 PF02154 Flagellar motor switch protein FliM VEA_002822 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VEA_002823 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VEA_002824 PF04347 Flagellar biosynthesis protein, FliO VEA_002825 PF00813 FliP family VEA_002826 PF01313 Bacterial export proteins, family 3 VEA_002827 PF01311 Bacterial export proteins, family 1 VEA_002828 PF01312 FlhB HrpN YscU SpaS Family VEA_002829 PF00771 FHIPEP family VEA_002830 PF00448 SRP54-type protein, GTPase domain VEA_002831 PF10609 NUBPL iron-transfer P-loop NTPase VEA_002832 PF04545 Sigma-70, region 4 VEA_002832 PF04542 Sigma-70 region 2 VEA_002832 PF04539 Sigma-70 region 3 VEA_002833 PF00072 Response regulator receiver domain VEA_002834 PF04344 Chemotaxis phosphatase, CheZ VEA_002835 PF01584 CheW-like domain VEA_002835 PF01627 Hpt domain VEA_002835 PF07194 P2 response regulator binding domain VEA_002835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_002835 PF02895 Signal transducing histidine kinase, homodimeric domain VEA_002836 PF00072 Response regulator receiver domain VEA_002836 PF01339 CheB methylesterase VEA_002837 PF13614 AAA domain VEA_002839 PF01584 CheW-like domain VEA_002841 PF00005 ABC transporter VEA_002842 PF03379 CcmB protein VEA_002843 PF01578 Cytochrome C assembly protein VEA_002844 PF04995 Heme exporter protein D (CcmD) VEA_002845 PF03100 CcmE VEA_002846 PF01578 Cytochrome C assembly protein VEA_002846 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VEA_002847 PF08534 Redoxin VEA_002848 PF03918 Cytochrome C biogenesis protein VEA_002849 PF03918 Cytochrome C biogenesis protein VEA_002850 PF04333 MlaA lipoprotein VEA_002851 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VEA_002852 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VEA_002854 PF08281 Sigma-70, region 4 VEA_002854 PF04542 Sigma-70 region 2 VEA_002856 PF00108 Thiolase, N-terminal domain VEA_002856 PF02803 Thiolase, C-terminal domain VEA_002857 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VEA_002857 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VEA_002857 PF00378 Enoyl-CoA hydratase/isomerase VEA_002859 PF05193 Peptidase M16 inactive domain VEA_002859 PF16187 Middle or third domain of peptidase_M16 VEA_002859 PF00675 Insulinase (Peptidase family M16) VEA_002860 PF00300 Histidine phosphatase superfamily (branch 1) VEA_002861 PF01713 Smr domain VEA_002862 PF05175 Methyltransferase small domain VEA_002863 PF01264 Chorismate synthase VEA_002864 PF03458 UPF0126 domain VEA_002866 PF04315 Elongation factor P hydroxylase VEA_002867 PF08891 YfcL protein VEA_002868 PF03358 NADPH-dependent FMN reductase VEA_002869 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VEA_002869 PF01266 FAD dependent oxidoreductase VEA_002870 PF00109 Beta-ketoacyl synthase, N-terminal domain VEA_002870 PF02801 Beta-ketoacyl synthase, C-terminal domain VEA_002871 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VEA_002871 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VEA_002871 PF11890 Domain of unknown function (DUF3410) VEA_002872 PF01118 Semialdehyde dehydrogenase, NAD binding domain VEA_002872 PF02774 Semialdehyde dehydrogenase, dimerisation domain VEA_002874 PF01416 tRNA pseudouridine synthase VEA_002875 PF17848 Acetyl-coA carboxylase zinc finger domain VEA_002875 PF01039 Carboxyl transferase domain VEA_002876 PF08245 Mur ligase middle domain VEA_002876 PF02875 Mur ligase family, glutamate ligase domain VEA_002877 PF05036 Sporulation related domain VEA_002878 PF02674 Colicin V production protein VEA_002879 PF00156 Phosphoribosyl transferase domain VEA_002880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_002880 PF03466 LysR substrate binding domain VEA_002881 PF00072 Response regulator receiver domain VEA_002884 PF00156 Phosphoribosyl transferase domain VEA_002885 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VEA_002885 PF12169 DNA polymerase III subunits gamma and tau domain III VEA_002885 PF12170 DNA polymerase III tau subunit V interacting with alpha VEA_002886 PF02575 YbaB/EbfC DNA-binding family VEA_002887 PF13662 Toprim domain VEA_002887 PF02132 RecR protein VEA_002890 PF00230 Major intrinsic protein VEA_002892 PF01042 Endoribonuclease L-PSP VEA_002893 PF03313 Serine dehydratase alpha chain VEA_002895 PF03692 Putative zinc- or iron-chelating domain VEA_002896 PF04226 Transglycosylase associated protein VEA_002897 PF03692 Putative zinc- or iron-chelating domain VEA_002898 PF00924 Mechanosensitive ion channel VEA_002898 PF05552 Conserved TM helix VEA_002899 PF03992 Antibiotic biosynthesis monooxygenase VEA_002900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VEA_002902 PF00245 Alkaline phosphatase VEA_002905 PF13847 Methyltransferase domain VEA_002906 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_002906 PF00672 HAMP domain VEA_002906 PF02743 Cache domain VEA_002907 PF01263 Aldose 1-epimerase VEA_002908 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VEA_002908 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VEA_002909 PF01641 SelR domain VEA_002911 PF07023 Protein of unknown function (DUF1315) VEA_002912 PF17763 Glutaminase/Asparaginase C-terminal domain VEA_002912 PF00710 Asparaginase, N-terminal VEA_002913 PF01343 Peptidase family S49 VEA_002914 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_002914 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VEA_002916 PF00881 Nitroreductase family VEA_002917 PF01751 Toprim domain VEA_002917 PF01131 DNA topoisomerase VEA_002919 PF00106 short chain dehydrogenase VEA_002921 PF00850 Histone deacetylase domain VEA_002922 PF11893 Domain of unknown function (DUF3413) VEA_002922 PF00884 Sulfatase VEA_002923 PF07208 Protein of unknown function (DUF1414) VEA_002924 PF04245 37-kD nucleoid-associated bacterial protein VEA_002927 PF03553 Na+/H+ antiporter family VEA_002928 PF01118 Semialdehyde dehydrogenase, NAD binding domain VEA_002928 PF02774 Semialdehyde dehydrogenase, dimerisation domain VEA_002929 PF00027 Cyclic nucleotide-binding domain VEA_002929 PF00520 Ion transport protein VEA_002930 PF01914 MarC family integral membrane protein VEA_002931 PF00465 Iron-containing alcohol dehydrogenase VEA_002931 PF00171 Aldehyde dehydrogenase family VEA_002934 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VEA_002934 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VEA_002935 PF00462 Glutaredoxin VEA_002937 PF03553 Na+/H+ antiporter family VEA_002937 PF13726 Na+-H+ antiporter family VEA_002938 PF00929 Exonuclease VEA_002940 PF00691 OmpA family VEA_002940 PF18393 MotY N-terminal domain VEA_002941 PF10952 Protein of unknown function (DUF2753) VEA_002942 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VEA_002943 PF00730 HhH-GPD superfamily base excision DNA repair protein VEA_002943 PF00633 Helix-hairpin-helix motif VEA_002943 PF10576 Iron-sulfur binding domain of endonuclease III VEA_002944 PF02508 Rnf-Nqr subunit, membrane protein VEA_002945 PF04205 FMN-binding domain VEA_002946 PF03116 NQR2, RnfD, RnfE family VEA_002947 PF10531 SLBB domain VEA_002947 PF13375 RnfC Barrel sandwich hybrid domain VEA_002947 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VEA_002947 PF12838 4Fe-4S dicluster domain VEA_002948 PF04060 Putative Fe-S cluster VEA_002949 PF02508 Rnf-Nqr subunit, membrane protein VEA_002950 PF17757 UvrB interaction domain VEA_002950 PF00271 Helicase conserved C-terminal domain VEA_002950 PF04851 Type III restriction enzyme, res subunit VEA_002950 PF12344 Ultra-violet resistance protein B VEA_002950 PF02151 UvrB/uvrC motif VEA_002951 PF00072 Response regulator receiver domain VEA_002951 PF00158 Sigma-54 interaction domain VEA_002951 PF02954 Bacterial regulatory protein, Fis family VEA_002952 PF01627 Hpt domain VEA_002953 PF01933 Uncharacterised protein family UPF0052 VEA_002954 PF06463 Molybdenum Cofactor Synthesis C VEA_002954 PF04055 Radical SAM superfamily VEA_002955 PF00994 Probable molybdopterin binding domain VEA_002956 PF01967 MoaC family VEA_002957 PF02597 ThiS family VEA_002958 PF02391 MoaE protein VEA_002959 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_002960 PF00528 Binding-protein-dependent transport system inner membrane component VEA_002961 PF00528 Binding-protein-dependent transport system inner membrane component VEA_002961 PF12911 N-terminal TM domain of oligopeptide transport permease C VEA_002962 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_002962 PF00005 ABC transporter VEA_002963 PF00005 ABC transporter VEA_002963 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_002964 PF13409 Glutathione S-transferase, N-terminal domain VEA_002966 PF13194 Domain of unknown function (DUF4010) VEA_002967 PF01515 Phosphate acetyl/butaryl transferase VEA_002967 PF07085 DRTGG domain VEA_002968 PF00871 Acetokinase family VEA_002969 PF04217 Protein of unknown function, DUF412 VEA_002971 PF02653 Branched-chain amino acid transport system / permease component VEA_002972 PF00005 ABC transporter VEA_002973 PF02903 Alpha amylase, N-terminal ig-like domain VEA_002973 PF00128 Alpha amylase, catalytic domain VEA_002974 PF17158 Membrane-associated sensor, integral membrane domain VEA_002974 PF00990 Diguanylate cyclase, GGDEF domain VEA_002975 PF01207 Dihydrouridine synthase (Dus) VEA_002976 PF02810 SEC-C motif VEA_002976 PF07516 SecA Wing and Scaffold domain VEA_002976 PF07517 SecA DEAD-like domain VEA_002976 PF01043 SecA preprotein cross-linking domain VEA_002977 PF02600 Disulfide bond formation protein DsbB VEA_002978 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VEA_002979 PF07840 FadR C-terminal domain VEA_002979 PF00392 Bacterial regulatory proteins, gntR family VEA_002981 PF09334 tRNA synthetases class I (M) VEA_002981 PF01588 Putative tRNA binding domain VEA_002982 PF10609 NUBPL iron-transfer P-loop NTPase VEA_002983 PF00485 Phosphoribulokinase / Uridine kinase family VEA_002985 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VEA_002985 PF12557 Cob(I)alamin adenosyltransferase N terminal VEA_002986 PF01451 Low molecular weight phosphotyrosine protein phosphatase VEA_002987 PF01740 STAS domain VEA_002987 PF00916 Sulfate permease family VEA_002988 PF12111 Polyribonucleotide phosphorylase C terminal VEA_002988 PF10150 Ribonuclease E/G family VEA_002988 PF00575 S1 RNA binding domain VEA_002989 PF00849 RNA pseudouridylate synthase VEA_002989 PF01479 S4 domain VEA_002990 PF02545 Maf-like protein VEA_002991 PF02620 Large ribosomal RNA subunit accumulation protein YceD VEA_002992 PF01783 Ribosomal L32p protein family VEA_002993 PF02504 Fatty acid synthesis protein VEA_002994 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VEA_002994 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VEA_002995 PF00698 Acyl transferase domain VEA_002997 PF00550 Phosphopantetheine attachment site VEA_002998 PF00109 Beta-ketoacyl synthase, N-terminal domain VEA_002998 PF02801 Beta-ketoacyl synthase, C-terminal domain VEA_002999 PF01063 Amino-transferase class IV VEA_003000 PF02618 YceG-like family VEA_003001 PF02223 Thymidylate kinase VEA_003002 PF09115 DNA polymerase III, delta subunit, C terminal VEA_003003 PF01026 TatD related DNase VEA_003004 PF00367 phosphotransferase system, EIIB VEA_003004 PF02378 Phosphotransferase system, EIIC VEA_003007 PF00209 Sodium:neurotransmitter symporter family VEA_003010 PF01734 Patatin-like phospholipase VEA_003011 PF00224 Pyruvate kinase, barrel domain VEA_003011 PF02887 Pyruvate kinase, alpha/beta domain VEA_003012 PF00480 ROK family VEA_003013 PF01584 CheW-like domain VEA_003013 PF00072 Response regulator receiver domain VEA_003014 PF02811 PHP domain VEA_003014 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VEA_003014 PF01336 OB-fold nucleic acid binding domain VEA_003014 PF07733 Bacterial DNA polymerase III alpha NTPase domain VEA_003014 PF14579 Helix-hairpin-helix motif VEA_003017 PF00106 short chain dehydrogenase VEA_003018 PF01343 Peptidase family S49 VEA_003018 PF08496 Peptidase family S49 N-terminal VEA_003019 PF02224 Cytidylate kinase VEA_003020 PF00575 S1 RNA binding domain VEA_003021 PF00216 Bacterial DNA-binding protein VEA_003022 PF06305 Lipopolysaccharide assembly protein A domain VEA_003023 PF18073 Rubredoxin metal binding domain VEA_003024 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VEA_003025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_003028 PF02470 MlaD protein VEA_003029 PF04403 Paraquat-inducible protein A VEA_003030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VEA_003031 PF00034 Cytochrome c VEA_003032 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VEA_003032 PF00384 Molybdopterin oxidoreductase VEA_003032 PF01568 Molydopterin dinucleotide binding domain VEA_003033 PF03916 Polysulphide reductase, NrfD VEA_003034 PF13247 4Fe-4S dicluster domain VEA_003035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003035 PF00512 His Kinase A (phospho-acceptor) domain VEA_003036 PF00072 Response regulator receiver domain VEA_003036 PF00196 Bacterial regulatory proteins, luxR family VEA_003038 PF02683 Cytochrome C biogenesis protein transmembrane region VEA_003038 PF11412 Disulphide bond corrector protein DsbC VEA_003039 PF00085 Thioredoxin VEA_003042 PF01938 TRAM domain VEA_003042 PF05958 tRNA (Uracil-5-)-methyltransferase VEA_003046 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_003048 PF12704 MacB-like periplasmic core domain VEA_003048 PF00005 ABC transporter VEA_003048 PF02687 FtsX-like permease family VEA_003049 PF00005 ABC transporter VEA_003049 PF02687 FtsX-like permease family VEA_003049 PF12704 MacB-like periplasmic core domain VEA_003050 PF12704 MacB-like periplasmic core domain VEA_003050 PF02687 FtsX-like permease family VEA_003050 PF00005 ABC transporter VEA_003054 PF08267 Cobalamin-independent synthase, N-terminal domain VEA_003054 PF01717 Cobalamin-independent synthase, Catalytic domain VEA_003056 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_003056 PF00529 HlyD membrane-fusion protein of T1SS VEA_003057 PF03466 LysR substrate binding domain VEA_003057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_003061 PF00672 HAMP domain VEA_003061 PF00512 His Kinase A (phospho-acceptor) domain VEA_003061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003062 PF00072 Response regulator receiver domain VEA_003062 PF00486 Transcriptional regulatory protein, C terminal VEA_003063 PF00672 HAMP domain VEA_003063 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_003066 PF08497 Radical SAM N-terminal VEA_003066 PF04055 Radical SAM superfamily VEA_003066 PF11842 Domain of unknown function (DUF3362) VEA_003067 PF08448 PAS fold VEA_003067 PF08447 PAS fold VEA_003067 PF00990 Diguanylate cyclase, GGDEF domain VEA_003067 PF00563 EAL domain VEA_003070 PF03466 LysR substrate binding domain VEA_003070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_003071 PF01717 Cobalamin-independent synthase, Catalytic domain VEA_003071 PF08267 Cobalamin-independent synthase, N-terminal domain VEA_003073 PF03795 YCII-related domain VEA_003074 PF03061 Thioesterase superfamily VEA_003075 PF04279 Intracellular septation protein A VEA_003077 PF00072 Response regulator receiver domain VEA_003077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003078 PF17327 Acyl homoserine lactone synthase VEA_003079 PF00375 Sodium:dicarboxylate symporter family VEA_003081 PF13193 AMP-binding enzyme C-terminal domain VEA_003081 PF00501 AMP-binding enzyme VEA_003082 PF13545 Crp-like helix-turn-helix domain VEA_003082 PF00027 Cyclic nucleotide-binding domain VEA_003083 PF00290 Tryptophan synthase alpha chain VEA_003084 PF00291 Pyridoxal-phosphate dependent enzyme VEA_003085 PF00218 Indole-3-glycerol phosphate synthase VEA_003085 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VEA_003086 PF00591 Glycosyl transferase family, a/b domain VEA_003086 PF02885 Glycosyl transferase family, helical bundle domain VEA_003087 PF00117 Glutamine amidotransferase class-I VEA_003088 PF04715 Anthranilate synthase component I, N terminal region VEA_003088 PF00425 chorismate binding enzyme VEA_003089 PF08056 Tryptophan operon leader peptide VEA_003090 PF02811 PHP domain VEA_003091 PF01300 Telomere recombination VEA_003093 PF01479 S4 domain VEA_003093 PF00849 RNA pseudouridylate synthase VEA_003094 PF04269 Protein of unknown function, DUF440 VEA_003095 PF09285 Elongation factor P, C-terminal VEA_003095 PF08207 Elongation factor P (EF-P) KOW-like domain VEA_003095 PF01132 Elongation factor P (EF-P) OB domain VEA_003097 PF03104 DNA polymerase family B, exonuclease domain VEA_003097 PF00136 DNA polymerase family B VEA_003098 PF00196 Bacterial regulatory proteins, luxR family VEA_003098 PF00072 Response regulator receiver domain VEA_003099 PF02151 UvrB/uvrC motif VEA_003099 PF01541 GIY-YIG catalytic domain VEA_003099 PF08459 UvrC Helix-hairpin-helix N-terminal VEA_003100 PF01066 CDP-alcohol phosphatidyltransferase VEA_003101 PF00202 Aminotransferase class-III VEA_003102 PF16653 Saccharopine dehydrogenase C-terminal domain VEA_003102 PF03435 Saccharopine dehydrogenase NADP binding domain VEA_003103 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VEA_003106 PF00994 Probable molybdopterin binding domain VEA_003108 PF00268 Ribonucleotide reductase, small chain VEA_003109 PF00317 Ribonucleotide reductase, all-alpha domain VEA_003109 PF02867 Ribonucleotide reductase, barrel domain VEA_003109 PF03477 ATP cone domain VEA_003111 PF00521 DNA gyrase/topoisomerase IV, subunit A VEA_003111 PF03989 DNA gyrase C-terminal domain, beta-propeller VEA_003114 PF02335 Cytochrome c552 VEA_003116 PF13247 4Fe-4S dicluster domain VEA_003117 PF03916 Polysulphide reductase, NrfD VEA_003118 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VEA_003118 PF01578 Cytochrome C assembly protein VEA_003119 PF08534 Redoxin VEA_003120 PF03918 Cytochrome C biogenesis protein VEA_003122 PF00925 GTP cyclohydrolase II VEA_003127 PF03734 L,D-transpeptidase catalytic domain VEA_003127 PF01471 Putative peptidoglycan binding domain VEA_003128 PF05951 Bacterial protein of unknown function (DUF882) VEA_003129 PF00753 Metallo-beta-lactamase superfamily VEA_003132 PF03480 Bacterial extracellular solute-binding protein, family 7 VEA_003134 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VEA_003135 PF17200 Single Cache domain 2 VEA_003135 PF07730 Histidine kinase VEA_003136 PF00072 Response regulator receiver domain VEA_003136 PF00196 Bacterial regulatory proteins, luxR family VEA_003138 PF02028 BCCT, betaine/carnitine/choline family transporter VEA_003139 PF00672 HAMP domain VEA_003139 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_003143 PF00155 Aminotransferase class I and II VEA_003147 PF00392 Bacterial regulatory proteins, gntR family VEA_003147 PF00155 Aminotransferase class I and II VEA_003150 PF00152 tRNA synthetases class II (D, K and N) VEA_003150 PF01336 OB-fold nucleic acid binding domain VEA_003151 PF17200 Single Cache domain 2 VEA_003151 PF00672 HAMP domain VEA_003151 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_003152 PF01242 6-pyruvoyl tetrahydropterin synthase VEA_003154 PF04940 Sensors of blue-light using FAD VEA_003154 PF00563 EAL domain VEA_003155 PF03315 Serine dehydratase beta chain VEA_003155 PF03313 Serine dehydratase alpha chain VEA_003156 PF03222 Tryptophan/tyrosine permease family VEA_003157 PF00293 NUDIX domain VEA_003159 PF00072 Response regulator receiver domain VEA_003159 PF09308 LuxQ, periplasmic VEA_003159 PF00512 His Kinase A (phospho-acceptor) domain VEA_003159 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003160 PF00425 chorismate binding enzyme VEA_003160 PF04715 Anthranilate synthase component I, N terminal region VEA_003163 PF04317 YcjX-like family, DUF463 VEA_003164 PF05128 Domain of unknown function (DUF697) VEA_003165 PF18024 Helix-turn-helix domain VEA_003165 PF00158 Sigma-54 interaction domain VEA_003166 PF13302 Acetyltransferase (GNAT) domain VEA_003169 PF13495 Phage integrase, N-terminal SAM-like domain VEA_003169 PF00589 Phage integrase family VEA_003180 PF13344 Haloacid dehalogenase-like hydrolase VEA_003180 PF00293 NUDIX domain VEA_003207 PF13673 Acetyltransferase (GNAT) domain VEA_003217 PF13099 Domain of unknown function (DUF3944) VEA_003217 PF03981 Ubiquinol-cytochrome C chaperone VEA_003219 PF02224 Cytidylate kinase VEA_003219 PF02569 Pantoate-beta-alanine ligase VEA_003234 PF02384 N-6 DNA Methylase VEA_003242 PF12419 SNF2 Helicase protein VEA_003242 PF00271 Helicase conserved C-terminal domain VEA_003242 PF00176 SNF2 family N-terminal domain VEA_003253 PF13356 Arm DNA-binding domain VEA_003253 PF00589 Phage integrase family VEA_003258 PF02810 SEC-C motif VEA_003258 PF07516 SecA Wing and Scaffold domain VEA_003258 PF01043 SecA preprotein cross-linking domain VEA_003258 PF07517 SecA DEAD-like domain VEA_003284 PF00589 Phage integrase family VEA_003288 PF05840 Bacteriophage replication gene A protein (GPA) VEA_003289 PF02463 RecF/RecN/SMC N terminal domain VEA_003290 PF13361 UvrD-like helicase C-terminal domain VEA_003290 PF00580 UvrD/REP helicase N-terminal domain VEA_003294 PF00583 Acetyltransferase (GNAT) family VEA_003296 PF02798 Glutathione S-transferase, N-terminal domain VEA_003301 PF13302 Acetyltransferase (GNAT) domain VEA_003302 PF01411 tRNA synthetases class II (A) VEA_003302 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VEA_003305 PF07237 Protein of unknown function (DUF1428) VEA_003307 PF01810 LysE type translocator VEA_003308 PF11008 Protein of unknown function (DUF2846) VEA_003310 PF13533 Biotin-lipoyl like VEA_003312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_003312 PF03466 LysR substrate binding domain VEA_003314 PF13533 Biotin-lipoyl like VEA_003317 PF13533 Biotin-lipoyl like VEA_003319 PF17203 Single cache domain 3 VEA_003319 PF00989 PAS fold VEA_003319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003319 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VEA_003320 PF12431 Transcriptional regulator VEA_003320 PF00072 Response regulator receiver domain VEA_003321 PF07715 TonB-dependent Receptor Plug Domain VEA_003321 PF00593 TonB dependent receptor VEA_003322 PF12833 Helix-turn-helix domain VEA_003323 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VEA_003323 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VEA_003324 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VEA_003325 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VEA_003325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VEA_003329 PF01590 GAF domain VEA_003329 PF02954 Bacterial regulatory protein, Fis family VEA_003329 PF00158 Sigma-54 interaction domain VEA_003330 PF00171 Aldehyde dehydrogenase family VEA_003334 PF12833 Helix-turn-helix domain VEA_003338 PF16697 Inner membrane component of T3SS, cytoplasmic domain VEA_003338 PF16693 Inner membrane component of T3SS, periplasmic domain VEA_003340 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VEA_003341 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VEA_003343 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VEA_003344 PF01514 Secretory protein of YscJ/FliF family VEA_003346 PF02108 Flagellar assembly protein FliH VEA_003348 PF02661 Fic/DOC family VEA_003356 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_003356 PF00529 HlyD membrane-fusion protein of T1SS VEA_003358 PF08360 QacR-like protein, C-terminal region VEA_003358 PF00440 Bacterial regulatory proteins, tetR family VEA_003359 PF01312 FlhB HrpN YscU SpaS Family VEA_003360 PF01311 Bacterial export proteins, family 1 VEA_003361 PF01313 Bacterial export proteins, family 3 VEA_003362 PF00813 FliP family VEA_003363 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VEA_003366 PF18269 T3SS EscN ATPase C-terminal domain VEA_003366 PF02874 ATP synthase alpha/beta family, beta-barrel domain VEA_003366 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VEA_003368 PF09059 TyeA VEA_003372 PF00771 FHIPEP family VEA_003373 PF09621 Type III secretion system regulator (LcrR) VEA_003375 PF04792 V antigen (LcrV) protein VEA_003376 PF07720 Tetratricopeptide repeat VEA_003378 PF05844 YopD protein VEA_003379 PF16868 NMT1-like family VEA_003380 PF01925 Sulfite exporter TauE/SafE VEA_003382 PF01970 Tripartite tricarboxylate transporter TctA family VEA_003389 PF00285 Citrate synthase, C-terminal domain VEA_003390 PF00330 Aconitase family (aconitate hydratase) VEA_003390 PF00694 Aconitase C-terminal domain VEA_003391 PF04303 PrpF protein VEA_003392 PF00501 AMP-binding enzyme VEA_003392 PF13193 AMP-binding enzyme C-terminal domain VEA_003392 PF16177 Acetyl-coenzyme A synthetase N-terminus VEA_003394 PF00089 Trypsin VEA_003398 PF04055 Radical SAM superfamily VEA_003399 PF06508 Queuosine biosynthesis protein QueC VEA_003400 PF00990 Diguanylate cyclase, GGDEF domain VEA_003400 PF07694 5TMR of 5TMR-LYT VEA_003402 PF05736 OprF membrane domain VEA_003402 PF00691 OmpA family VEA_003405 PF00691 OmpA family VEA_003405 PF05736 OprF membrane domain VEA_003408 PF17785 PUA-like domain VEA_003408 PF10672 S-adenosylmethionine-dependent methyltransferase VEA_003409 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_003409 PF00672 HAMP domain VEA_003409 PF02743 Cache domain VEA_003410 PF00708 Acylphosphatase VEA_003411 PF04358 DsrC like protein VEA_003413 PF01027 Inhibitor of apoptosis-promoting Bax1 VEA_003414 PF00005 ABC transporter VEA_003415 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003416 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003418 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_003419 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VEA_003419 PF14824 Sirohaem biosynthesis protein central VEA_003419 PF10414 Sirohaem synthase dimerisation region VEA_003420 PF04461 Protein of unknown function (DUF520) VEA_003421 PF00793 DAHP synthetase I family VEA_003425 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VEA_003425 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VEA_003425 PF01189 16S rRNA methyltransferase RsmB/F VEA_003426 PF02470 MlaD protein VEA_003427 PF04403 Paraquat-inducible protein A VEA_003428 PF00664 ABC transporter transmembrane region VEA_003428 PF00005 ABC transporter VEA_003429 PF13185 GAF domain VEA_003430 PF17516 ProQ C-terminal domain VEA_003430 PF04352 ProQ/FINO family VEA_003431 PF17804 Tail specific protease N-terminal domain VEA_003431 PF03572 Peptidase family S41 VEA_003431 PF11818 C-terminal domain of tail specific protease (DUF3340) VEA_003431 PF00595 PDZ domain VEA_003433 PF01433 Peptidase family M1 domain VEA_003433 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VEA_003433 PF11940 Domain of unknown function (DUF3458) Ig-like fold VEA_003435 PF05088 Bacterial NAD-glutamate dehydrogenase VEA_003436 PF01180 Dihydroorotate dehydrogenase VEA_003437 PF07126 Cell-division protein ZapC VEA_003438 PF10672 S-adenosylmethionine-dependent methyltransferase VEA_003438 PF02926 THUMP domain VEA_003438 PF01170 Putative RNA methylase family UPF0020 VEA_003442 PF04957 Ribosome modulation factor VEA_003443 PF07977 FabA-like domain VEA_003444 PF05362 Lon protease (S16) C-terminal proteolytic domain VEA_003444 PF13654 AAA domain VEA_003445 PF06303 MatP N-terminal domain VEA_003445 PF17414 MatP C-terminal ribbon-helix-helix domain VEA_003452 PF03958 Bacterial type II/III secretion system short domain VEA_003452 PF00263 Bacterial type II and III secretion system protein VEA_003461 PF05840 Bacteriophage replication gene A protein (GPA) VEA_003464 PF00072 Response regulator receiver domain VEA_003464 PF09308 LuxQ, periplasmic VEA_003464 PF00512 His Kinase A (phospho-acceptor) domain VEA_003464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003467 PF00115 Cytochrome C and Quinol oxidase polypeptide I VEA_003470 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VEA_003470 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VEA_003472 PF00403 Heavy-metal-associated domain VEA_003475 PF13545 Crp-like helix-turn-helix domain VEA_003475 PF00027 Cyclic nucleotide-binding domain VEA_003476 PF00582 Universal stress protein family VEA_003477 PF01171 PP-loop family VEA_003481 PF00005 ABC transporter VEA_003481 PF08402 TOBE domain VEA_003482 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003483 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003484 PF13416 Bacterial extracellular solute-binding protein VEA_003485 PF13416 Bacterial extracellular solute-binding protein VEA_003486 PF02146 Sir2 family VEA_003488 PF00909 Ammonium Transporter Family VEA_003493 PF13247 4Fe-4S dicluster domain VEA_003494 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VEA_003494 PF00384 Molybdopterin oxidoreductase VEA_003494 PF01568 Molydopterin dinucleotide binding domain VEA_003496 PF02613 Nitrate reductase delta subunit VEA_003500 PF02634 FdhD/NarQ family VEA_003501 PF00005 ABC transporter VEA_003501 PF12848 ABC transporter VEA_003502 PF00512 His Kinase A (phospho-acceptor) domain VEA_003502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003503 PF00158 Sigma-54 interaction domain VEA_003503 PF00072 Response regulator receiver domain VEA_003503 PF02954 Bacterial regulatory protein, Fis family VEA_003504 PF12849 PBP superfamily domain VEA_003505 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003506 PF08402 TOBE domain VEA_003506 PF00005 ABC transporter VEA_003507 PF12804 MobA-like NTP transferase domain VEA_003508 PF00994 Probable molybdopterin binding domain VEA_003508 PF03453 MoeA N-terminal region (domain I and II) VEA_003508 PF03454 MoeA C-terminal region (domain IV) VEA_003510 PF00480 ROK family VEA_003516 PF02743 Cache domain VEA_003516 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_003516 PF00672 HAMP domain VEA_003517 PF00877 NlpC/P60 family VEA_003519 PF00990 Diguanylate cyclase, GGDEF domain VEA_003519 PF05230 MASE2 domain VEA_003520 PF01339 CheB methylesterase VEA_003520 PF00072 Response regulator receiver domain VEA_003523 PF00677 Lumazine binding domain VEA_003524 PF01554 MatE VEA_003526 PF01068 ATP dependent DNA ligase domain VEA_003526 PF14743 DNA ligase OB-like domain VEA_003528 PF01740 STAS domain VEA_003530 PF10531 SLBB domain VEA_003530 PF02563 Polysaccharide biosynthesis/export protein VEA_003533 PF00158 Sigma-54 interaction domain VEA_003533 PF00072 Response regulator receiver domain VEA_003533 PF02954 Bacterial regulatory protein, Fis family VEA_003534 PF00534 Glycosyl transferases group 1 VEA_003534 PF13439 Glycosyltransferase Family 4 VEA_003535 PF13439 Glycosyltransferase Family 4 VEA_003535 PF00534 Glycosyl transferases group 1 VEA_003541 PF00534 Glycosyl transferases group 1 VEA_003541 PF13439 Glycosyltransferase Family 4 VEA_003543 PF02397 Bacterial sugar transferase VEA_003545 PF02028 BCCT, betaine/carnitine/choline family transporter VEA_003548 PF11898 Domain of unknown function (DUF3418) VEA_003548 PF00270 DEAD/DEAH box helicase VEA_003548 PF04408 Helicase associated domain (HA2) VEA_003548 PF00271 Helicase conserved C-terminal domain VEA_003548 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VEA_003549 PF02525 Flavodoxin-like fold VEA_003556 PF00990 Diguanylate cyclase, GGDEF domain VEA_003558 PF00012 Hsp70 protein VEA_003559 PF00012 Hsp70 protein VEA_003563 PF07963 Prokaryotic N-terminal methylation motif VEA_003563 PF14245 Type IV pilin PilA VEA_003564 PF00664 ABC transporter transmembrane region VEA_003564 PF00005 ABC transporter VEA_003565 PF00005 ABC transporter VEA_003565 PF00664 ABC transporter transmembrane region VEA_003567 PF07715 TonB-dependent Receptor Plug Domain VEA_003567 PF00593 TonB dependent receptor VEA_003568 PF01032 FecCD transport family VEA_003569 PF01497 Periplasmic binding protein VEA_003570 PF00005 ABC transporter VEA_003573 PF03222 Tryptophan/tyrosine permease family VEA_003574 PF00465 Iron-containing alcohol dehydrogenase VEA_003575 PF01966 HD domain VEA_003577 PF03741 Integral membrane protein TerC family VEA_003579 PF04055 Radical SAM superfamily VEA_003580 PF11230 Protein of unknown function (DUF3029) VEA_003581 PF01810 LysE type translocator VEA_003582 PF01966 HD domain VEA_003582 PF11871 Domain of unknown function (DUF3391) VEA_003583 PF03707 Bacterial signalling protein N terminal repeat VEA_003583 PF00990 Diguanylate cyclase, GGDEF domain VEA_003583 PF00563 EAL domain VEA_003584 PF02954 Bacterial regulatory protein, Fis family VEA_003584 PF00158 Sigma-54 interaction domain VEA_003584 PF00072 Response regulator receiver domain VEA_003585 PF00512 His Kinase A (phospho-acceptor) domain VEA_003585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003586 PF00939 Sodium:sulfate symporter transmembrane region VEA_003591 PF00990 Diguanylate cyclase, GGDEF domain VEA_003591 PF00072 Response regulator receiver domain VEA_003593 PF03928 Haem-degrading VEA_003594 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VEA_003594 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VEA_003595 PF08220 DeoR-like helix-turn-helix domain VEA_003595 PF00455 DeoR C terminal sensor domain VEA_003598 PF13186 Iron-sulfur cluster-binding domain VEA_003598 PF04055 Radical SAM superfamily VEA_003599 PF03781 Sulfatase-modifying factor enzyme 1 VEA_003601 PF00884 Sulfatase VEA_003602 PF00696 Amino acid kinase family VEA_003602 PF13840 ACT domain VEA_003603 PF06339 Ectoine synthase VEA_003604 PF00202 Aminotransferase class-III VEA_003605 PF00583 Acetyltransferase (GNAT) family VEA_003606 PF02028 BCCT, betaine/carnitine/choline family transporter VEA_003609 PF00005 ABC transporter VEA_003609 PF00571 CBS domain VEA_003610 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003611 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VEA_003613 PF00501 AMP-binding enzyme VEA_003617 PF00486 Transcriptional regulatory protein, C terminal VEA_003617 PF00072 Response regulator receiver domain VEA_003618 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003618 PF00512 His Kinase A (phospho-acceptor) domain VEA_003618 PF08521 Two-component sensor kinase N-terminal VEA_003619 PF00884 Sulfatase VEA_003625 PF01235 Sodium:alanine symporter family VEA_003627 PF01810 LysE type translocator VEA_003628 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VEA_003629 PF03279 Bacterial lipid A biosynthesis acyltransferase VEA_003630 PF13520 Amino acid permease VEA_003631 PF00893 Small Multidrug Resistance protein VEA_003633 PF04204 Homoserine O-succinyltransferase VEA_003636 PF03707 Bacterial signalling protein N terminal repeat VEA_003636 PF00563 EAL domain VEA_003636 PF00990 Diguanylate cyclase, GGDEF domain VEA_003637 PF00512 His Kinase A (phospho-acceptor) domain VEA_003637 PF00672 HAMP domain VEA_003637 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VEA_003637 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003637 PF01627 Hpt domain VEA_003637 PF00072 Response regulator receiver domain VEA_003640 PF12464 Maltose acetyltransferase VEA_003640 PF00132 Bacterial transferase hexapeptide (six repeats) VEA_003643 PF04237 YjbR VEA_003644 PF01047 MarR family VEA_003646 PF12792 CSS motif domain associated with EAL VEA_003646 PF00563 EAL domain VEA_003652 PF14497 Glutathione S-transferase, C-terminal domain VEA_003652 PF02798 Glutathione S-transferase, N-terminal domain VEA_003654 PF04209 homogentisate 1,2-dioxygenase VEA_003655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VEA_003656 PF07687 Peptidase dimerisation domain VEA_003656 PF01546 Peptidase family M20/M25/M40 VEA_003657 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_003658 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003659 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003659 PF12911 N-terminal TM domain of oligopeptide transport permease C VEA_003660 PF00005 ABC transporter VEA_003660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_003661 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_003661 PF00005 ABC transporter VEA_003663 PF08453 Peptidase family M9 N-terminal VEA_003663 PF01752 Collagenase VEA_003666 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003667 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003668 PF00005 ABC transporter VEA_003668 PF08402 TOBE domain VEA_003669 PF00701 Dihydrodipicolinate synthetase family VEA_003670 PF02423 Ornithine cyclodeaminase/mu-crystallin family VEA_003673 PF05544 Proline racemase VEA_003674 PF00171 Aldehyde dehydrogenase family VEA_003675 PF00392 Bacterial regulatory proteins, gntR family VEA_003679 PF05971 RNA methyltransferase VEA_003680 PF01863 Protein of unknown function DUF45 VEA_003682 PF03466 LysR substrate binding domain VEA_003682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_003686 PF00005 ABC transporter VEA_003687 PF01032 FecCD transport family VEA_003688 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VEA_003691 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VEA_003692 PF02654 Cobalamin-5-phosphate synthase VEA_003693 PF02277 Phosphoribosyltransferase VEA_003694 PF13460 NAD(P)H-binding VEA_003696 PF08411 Exonuclease C-terminal VEA_003696 PF00929 Exonuclease VEA_003697 PF03788 LrgA family VEA_003698 PF04172 LrgB-like family VEA_003699 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VEA_003699 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VEA_003700 PF02222 ATP-grasp domain VEA_003701 PF05724 Thiopurine S-methyltransferase (TPMT) VEA_003703 PF00216 Bacterial DNA-binding protein VEA_003705 PF01588 Putative tRNA binding domain VEA_003705 PF03147 Ferredoxin-fold anticodon binding domain VEA_003705 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VEA_003705 PF03483 B3/4 domain VEA_003705 PF03484 tRNA synthetase B5 domain VEA_003706 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VEA_003706 PF01409 tRNA synthetases class II core domain (F) VEA_003712 PF01906 Putative heavy-metal-binding VEA_003713 PF00453 Ribosomal protein L20 VEA_003714 PF01632 Ribosomal protein L35 VEA_003715 PF00707 Translation initiation factor IF-3, C-terminal domain VEA_003715 PF05198 Translation initiation factor IF-3, N-terminal domain VEA_003716 PF02824 TGS domain VEA_003716 PF03129 Anticodon binding domain VEA_003716 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VEA_003716 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VEA_003719 PF07702 UTRA domain VEA_003719 PF00392 Bacterial regulatory proteins, gntR family VEA_003720 PF01979 Amidohydrolase family VEA_003721 PF00491 Arginase family VEA_003722 PF17391 Urocanase N-terminal domain VEA_003722 PF01175 Urocanase Rossmann-like domain VEA_003722 PF17392 Urocanase C-terminal domain VEA_003723 PF00221 Aromatic amino acid lyase VEA_003726 PF02913 FAD linked oxidases, C-terminal domain VEA_003726 PF13183 4Fe-4S dicluster domain VEA_003726 PF01565 FAD binding domain VEA_003729 PF05736 OprF membrane domain VEA_003729 PF00691 OmpA family VEA_003733 PF01259 SAICAR synthetase VEA_003734 PF09423 PhoD-like phosphatase VEA_003734 PF16655 PhoD-like phosphatase, N-terminal domain VEA_003736 PF08482 ATP-dependent helicase C-terminal VEA_003736 PF04408 Helicase associated domain (HA2) VEA_003736 PF00270 DEAD/DEAH box helicase VEA_003736 PF00271 Helicase conserved C-terminal domain VEA_003737 PF03949 Malic enzyme, NAD binding domain VEA_003737 PF00390 Malic enzyme, N-terminal domain VEA_003738 PF02698 DUF218 domain VEA_003739 PF00939 Sodium:sulfate symporter transmembrane region VEA_003740 PF00990 Diguanylate cyclase, GGDEF domain VEA_003740 PF00072 Response regulator receiver domain VEA_003742 PF00266 Aminotransferase class-V VEA_003744 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_003745 PF00664 ABC transporter transmembrane region VEA_003745 PF00005 ABC transporter VEA_003746 PF00664 ABC transporter transmembrane region VEA_003746 PF00005 ABC transporter VEA_003747 PF00291 Pyridoxal-phosphate dependent enzyme VEA_003748 PF00266 Aminotransferase class-V VEA_003750 PF00512 His Kinase A (phospho-acceptor) domain VEA_003750 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_003750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003753 PF04993 TfoX N-terminal domain VEA_003753 PF04994 TfoX C-terminal domain VEA_003756 PF03956 Lysine exporter LysO VEA_003759 PF00282 Pyridoxal-dependent decarboxylase conserved domain VEA_003760 PF01380 SIS domain VEA_003760 PF01418 Helix-turn-helix domain, rpiR family VEA_003761 PF00465 Iron-containing alcohol dehydrogenase VEA_003762 PF00462 Glutaredoxin VEA_003763 PF02080 TrkA-C domain VEA_003763 PF06826 Predicted Permease Membrane Region VEA_003764 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VEA_003764 PF12241 Trans-2-enoyl-CoA reductase catalytic region VEA_003764 PF07055 Enoyl reductase FAD binding domain VEA_003765 PF09317 Domain of unknown function (DUF1974) VEA_003765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VEA_003765 PF02770 Acyl-CoA dehydrogenase, middle domain VEA_003765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VEA_003766 PF16295 Tetracyclin repressor-like, C-terminal domain VEA_003766 PF00440 Bacterial regulatory proteins, tetR family VEA_003767 PF06965 Na+/H+ antiporter 1 VEA_003770 PF00005 ABC transporter VEA_003772 PF01554 MatE VEA_003773 PF11066 Protein of unknown function (DUF2867) VEA_003773 PF13460 NAD(P)H-binding VEA_003774 PF03264 NapC/NirT cytochrome c family, N-terminal region VEA_003777 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VEA_003780 PF07690 Major Facilitator Superfamily VEA_003781 PF01479 S4 domain VEA_003781 PF00849 RNA pseudouridylate synthase VEA_003782 PF04851 Type III restriction enzyme, res subunit VEA_003782 PF00271 Helicase conserved C-terminal domain VEA_003784 PF00072 Response regulator receiver domain VEA_003784 PF00486 Transcriptional regulatory protein, C terminal VEA_003785 PF00672 HAMP domain VEA_003785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003785 PF00512 His Kinase A (phospho-acceptor) domain VEA_003787 PF01386 Ribosomal L25p family VEA_003788 PF00583 Acetyltransferase (GNAT) family VEA_003789 PF00149 Calcineurin-like phosphoesterase VEA_003789 PF02872 5'-nucleotidase, C-terminal domain VEA_003791 PF06945 Protein of unknown function (DUF1289) VEA_003793 PF13416 Bacterial extracellular solute-binding protein VEA_003794 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003795 PF00005 ABC transporter VEA_003796 PF01066 CDP-alcohol phosphatidyltransferase VEA_003798 PF01590 GAF domain VEA_003798 PF00158 Sigma-54 interaction domain VEA_003799 PF03063 Prismane/CO dehydrogenase family VEA_003800 PF00970 Oxidoreductase FAD-binding domain VEA_003800 PF00111 2Fe-2S iron-sulfur cluster binding domain VEA_003800 PF00175 Oxidoreductase NAD-binding domain VEA_003802 PF00849 RNA pseudouridylate synthase VEA_003803 PF00209 Sodium:neurotransmitter symporter family VEA_003804 PF13091 PLD-like domain VEA_003804 PF13396 Phospholipase_D-nuclease N-terminal VEA_003805 PF01053 Cys/Met metabolism PLP-dependent enzyme VEA_003806 PF00561 alpha/beta hydrolase fold VEA_003807 PF03280 Proteobacterial lipase chaperone protein VEA_003808 PF03352 Methyladenine glycosylase VEA_003809 PF00873 AcrB/AcrD/AcrF family VEA_003810 PF13533 Biotin-lipoyl like VEA_003812 PF04024 PspC domain VEA_003813 PF06667 Phage shock protein B VEA_003814 PF04012 PspA/IM30 family VEA_003815 PF00158 Sigma-54 interaction domain VEA_003815 PF02954 Bacterial regulatory protein, Fis family VEA_003816 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VEA_003817 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003818 PF12911 N-terminal TM domain of oligopeptide transport permease C VEA_003818 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003819 PF00005 ABC transporter VEA_003819 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VEA_003820 PF00005 ABC transporter VEA_003822 PF01368 DHH family VEA_003822 PF02833 DHHA2 domain VEA_003824 PF16875 Glycosyl hydrolase family 36 N-terminal domain VEA_003824 PF16874 Glycosyl hydrolase family 36 C-terminal domain VEA_003825 PF00384 Molybdopterin oxidoreductase VEA_003825 PF01568 Molydopterin dinucleotide binding domain VEA_003825 PF18364 Molybdopterin oxidoreductase N-terminal domain VEA_003826 PF03264 NapC/NirT cytochrome c family, N-terminal region VEA_003827 PF06796 Periplasmic nitrate reductase protein NapE VEA_003828 PF03649 Uncharacterised protein family (UPF0014) VEA_003830 PF01226 Formate/nitrite transporter VEA_003835 PF02698 DUF218 domain VEA_003836 PF00265 Thymidine kinase VEA_003837 PF09190 DALR domain VEA_003837 PF01406 tRNA synthetases class I (C) catalytic domain VEA_003838 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VEA_003839 PF00149 Calcineurin-like phosphoesterase VEA_003840 PF00563 EAL domain VEA_003840 PF08668 HDOD domain VEA_003841 PF02810 SEC-C motif VEA_003842 PF01502 Phosphoribosyl-AMP cyclohydrolase VEA_003842 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VEA_003843 PF00977 Histidine biosynthesis protein VEA_003844 PF00977 Histidine biosynthesis protein VEA_003845 PF00117 Glutamine amidotransferase class-I VEA_003846 PF00475 Imidazoleglycerol-phosphate dehydratase VEA_003846 PF08645 Polynucleotide kinase 3 phosphatase VEA_003847 PF00155 Aminotransferase class I and II VEA_003848 PF00815 Histidinol dehydrogenase VEA_003849 PF01634 ATP phosphoribosyltransferase VEA_003849 PF08029 HisG, C-terminal domain VEA_003850 PF00158 Sigma-54 interaction domain VEA_003850 PF00072 Response regulator receiver domain VEA_003850 PF02954 Bacterial regulatory protein, Fis family VEA_003851 PF03553 Na+/H+ antiporter family VEA_003852 PF00816 H-NS histone family VEA_003853 PF00294 pfkB family carbohydrate kinase VEA_003856 PF04356 Protein of unknown function (DUF489) VEA_003857 PF00206 Lyase VEA_003857 PF08328 Adenylosuccinate lyase C-terminal VEA_003859 PF16036 Chalcone isomerase-like VEA_003864 PF00106 short chain dehydrogenase VEA_003866 PF01435 Peptidase family M48 VEA_003869 PF12697 Alpha/beta hydrolase family VEA_003869 PF08241 Methyltransferase domain VEA_003870 PF00155 Aminotransferase class I and II VEA_003871 PF04055 Radical SAM superfamily VEA_003871 PF06968 Biotin and Thiamin Synthesis associated domain VEA_003876 PF02403 Seryl-tRNA synthetase N-terminal domain VEA_003876 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VEA_003877 PF00004 ATPase family associated with various cellular activities (AAA) VEA_003877 PF12002 MgsA AAA+ ATPase C terminal VEA_003877 PF16193 AAA C-terminal domain VEA_003878 PF03548 Outer membrane lipoprotein carrier protein LolA VEA_003879 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VEA_003879 PF09397 Ftsk gamma domain VEA_003879 PF01580 FtsK/SpoIIIE family VEA_003879 PF17854 FtsK alpha domain VEA_003880 PF01037 Lrp/AsnC ligand binding domain VEA_003881 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VEA_003881 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VEA_003883 PF03466 LysR substrate binding domain VEA_003883 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_003885 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VEA_003886 PF12729 Four helix bundle sensory module for signal transduction VEA_003886 PF00672 HAMP domain VEA_003886 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_003888 PF03372 Endonuclease/Exonuclease/phosphatase family VEA_003890 PF00579 tRNA synthetases class I (W and Y) VEA_003894 PF00873 AcrB/AcrD/AcrF family VEA_003895 PF00529 HlyD membrane-fusion protein of T1SS VEA_003895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_003896 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_003896 PF00672 HAMP domain VEA_003898 PF02796 Helix-turn-helix domain of resolvase VEA_003898 PF00239 Resolvase, N terminal domain VEA_003899 PF00075 RNase H VEA_003903 PF06610 L-alanine exporter VEA_003904 PF09308 LuxQ, periplasmic VEA_003904 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_003904 PF00072 Response regulator receiver domain VEA_003904 PF00512 His Kinase A (phospho-acceptor) domain VEA_003906 PF03738 Glutathionylspermidine synthase preATP-grasp VEA_003908 PF03994 Domain of Unknown Function (DUF350) VEA_003910 PF02445 Quinolinate synthetase A protein VEA_003911 PF16331 TolA binding protein trimerisation VEA_003911 PF13174 Tetratricopeptide repeat VEA_003912 PF00691 OmpA family VEA_003913 PF04052 TolB amino-terminal domain VEA_003913 PF07676 WD40-like Beta Propeller Repeat VEA_003915 PF02472 Biopolymer transport protein ExbD/TolR VEA_003916 PF01618 MotA/TolQ/ExbB proton channel family VEA_003917 PF03061 Thioesterase superfamily VEA_003919 PF08173 Membrane bound YbgT-like protein VEA_003920 PF02322 Cytochrome bd terminal oxidase subunit II VEA_003921 PF01654 Cytochrome bd terminal oxidase subunit I VEA_003922 PF05496 Holliday junction DNA helicase RuvB P-loop domain VEA_003922 PF05491 RuvB C-terminal winged helix domain VEA_003922 PF17864 RuvB AAA lid domain VEA_003923 PF01330 RuvA N terminal domain VEA_003923 PF07499 RuvA, C-terminal domain VEA_003924 PF02075 Crossover junction endodeoxyribonuclease RuvC VEA_003925 PF01709 Transcriptional regulator VEA_003926 PF02938 GAD domain VEA_003926 PF00152 tRNA synthetases class II (D, K and N) VEA_003926 PF01336 OB-fold nucleic acid binding domain VEA_003927 PF01904 Protein of unknown function DUF72 VEA_003928 PF13649 Methyltransferase domain VEA_003929 PF08003 Protein of unknown function (DUF1698) VEA_003930 PF18030 RimK PreATP-grasp domain VEA_003930 PF08443 RimK-like ATP-grasp domain VEA_003934 PF04310 MukB N-terminal VEA_003934 PF16330 MukB hinge domain VEA_003935 PF04288 MukE-like family VEA_003936 PF17193 MukF C-terminal domain VEA_003936 PF17192 MukF middle domain VEA_003936 PF03882 MukF winged-helix domain VEA_003938 PF02698 DUF218 domain VEA_003939 PF00072 Response regulator receiver domain VEA_003939 PF00486 Transcriptional regulatory protein, C terminal VEA_003940 PF02613 Nitrate reductase delta subunit VEA_003941 PF00356 Bacterial regulatory proteins, lacI family VEA_003942 PF04994 TfoX C-terminal domain VEA_003942 PF04993 TfoX N-terminal domain VEA_003946 PF00534 Glycosyl transferases group 1 VEA_003946 PF08323 Starch synthase catalytic domain VEA_003947 PF00483 Nucleotidyl transferase VEA_003948 PF01131 DNA topoisomerase VEA_003948 PF08272 Topoisomerase I zinc-ribbon-like VEA_003948 PF01751 Toprim domain VEA_003948 PF01396 Topoisomerase DNA binding C4 zinc finger VEA_003950 PF10692 Protein of unknown function (DUF2498) VEA_003951 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VEA_003953 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VEA_003954 PF04377 Arginine-tRNA-protein transferase, C terminus VEA_003954 PF04376 Arginine-tRNA-protein transferase, N terminus VEA_003955 PF01176 Translation initiation factor 1A / IF-1 VEA_003956 PF10431 C-terminal, D2-small domain, of ClpB protein VEA_003956 PF02861 Clp amino terminal domain, pathogenicity island component VEA_003956 PF17871 AAA lid domain VEA_003956 PF07724 AAA domain (Cdc48 subfamily) VEA_003956 PF00004 ATPase family associated with various cellular activities (AAA) VEA_003957 PF02617 ATP-dependent Clp protease adaptor protein ClpS VEA_003958 PF00313 'Cold-shock' DNA-binding domain VEA_003959 PF03971 Monomeric isocitrate dehydrogenase VEA_003960 PF00849 RNA pseudouridylate synthase VEA_003961 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VEA_003963 PF13307 Helicase C-terminal domain VEA_003963 PF06733 DEAD_2 VEA_003964 PF01925 Sulfite exporter TauE/SafE VEA_003965 PF07445 Primosomal replication protein priC VEA_003966 PF10689 Protein of unknown function (DUF2496) VEA_003967 PF03372 Endonuclease/Exonuclease/phosphatase family VEA_003970 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003971 PF00528 Binding-protein-dependent transport system inner membrane component VEA_003972 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_003973 PF00005 ABC transporter VEA_003976 PF02901 Pyruvate formate lyase-like VEA_003976 PF01228 Glycine radical VEA_003978 PF04055 Radical SAM superfamily VEA_003980 PF03887 YfbU domain VEA_003981 PF08298 PrkA AAA domain VEA_003981 PF06798 PrkA serine protein kinase C-terminal domain VEA_003982 PF04285 Protein of unknown function (DUF444) VEA_003983 PF04293 SpoVR like protein VEA_003984 PF02348 Cytidylyltransferase VEA_003985 PF03966 Trm112p-like protein VEA_003986 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VEA_003987 PF00005 ABC transporter VEA_003987 PF00664 ABC transporter transmembrane region VEA_003988 PF13567 Domain of unknown function (DUF4131) VEA_003988 PF00753 Metallo-beta-lactamase superfamily VEA_003988 PF03772 Competence protein VEA_003990 PF12704 MacB-like periplasmic core domain VEA_003990 PF02687 FtsX-like permease family VEA_003991 PF00005 ABC transporter VEA_003992 PF02687 FtsX-like permease family VEA_003992 PF12704 MacB-like periplasmic core domain VEA_003994 PF00271 Helicase conserved C-terminal domain VEA_003994 PF17757 UvrB interaction domain VEA_003994 PF02559 CarD-like/TRCF domain VEA_003994 PF00270 DEAD/DEAH box helicase VEA_003994 PF03461 TRCF domain VEA_003997 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_003998 PF05728 Uncharacterised protein family (UPF0227) VEA_003999 PF01636 Phosphotransferase enzyme family VEA_004000 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VEA_004000 PF13036 Peptidoglycan-synthase activator LpoB VEA_004003 PF01230 HIT domain VEA_004004 PF00672 HAMP domain VEA_004004 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_004006 PF01048 Phosphorylase superfamily VEA_004007 PF00403 Heavy-metal-associated domain VEA_004008 PF00571 CBS domain VEA_004008 PF00478 IMP dehydrogenase / GMP reductase domain VEA_004009 PF08032 RNA 2'-O ribose methyltransferase substrate binding VEA_004009 PF00588 SpoU rRNA Methylase family VEA_004010 PF00990 Diguanylate cyclase, GGDEF domain VEA_004010 PF00072 Response regulator receiver domain VEA_004012 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VEA_004013 PF09619 Type III secretion system lipoprotein chaperone (YscW) VEA_004016 PF01037 Lrp/AsnC ligand binding domain VEA_004016 PF13404 AsnC-type helix-turn-helix domain VEA_004017 PF00291 Pyridoxal-phosphate dependent enzyme VEA_004021 PF00873 AcrB/AcrD/AcrF family VEA_004022 PF00529 HlyD membrane-fusion protein of T1SS VEA_004022 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VEA_004025 PF07690 Major Facilitator Superfamily VEA_004026 PF03601 Conserved hypothetical protein 698 VEA_004028 PF00501 AMP-binding enzyme VEA_004028 PF13193 AMP-binding enzyme C-terminal domain VEA_004029 PF13378 Enolase C-terminal domain-like VEA_004030 PF00378 Enoyl-CoA hydratase/isomerase VEA_004031 PF12697 Alpha/beta hydrolase family VEA_004032 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VEA_004032 PF16582 Middle domain of thiamine pyrophosphate VEA_004032 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VEA_004033 PF00425 chorismate binding enzyme VEA_004034 PF00155 Aminotransferase class I and II VEA_004036 PF13286 Phosphohydrolase-associated domain VEA_004036 PF01966 HD domain VEA_004040 PF13145 PPIC-type PPIASE domain VEA_004041 PF00216 Bacterial DNA-binding protein VEA_004042 PF00004 ATPase family associated with various cellular activities (AAA) VEA_004042 PF02190 ATP-dependent protease La (LON) substrate-binding domain VEA_004042 PF05362 Lon protease (S16) C-terminal proteolytic domain VEA_004043 PF06689 ClpX C4-type zinc finger VEA_004043 PF10431 C-terminal, D2-small domain, of ClpB protein VEA_004043 PF07724 AAA domain (Cdc48 subfamily) VEA_004044 PF00574 Clp protease VEA_004045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VEA_004045 PF05697 Bacterial trigger factor protein (TF) VEA_004045 PF05698 Bacterial trigger factor protein (TF) C-terminus VEA_004046 PF00512 His Kinase A (phospho-acceptor) domain VEA_004046 PF02743 Cache domain VEA_004046 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_004047 PF00072 Response regulator receiver domain VEA_004047 PF00158 Sigma-54 interaction domain VEA_004047 PF02954 Bacterial regulatory protein, Fis family VEA_004048 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VEA_004049 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VEA_004050 PF03480 Bacterial extracellular solute-binding protein, family 7 VEA_004051 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VEA_004054 PF02386 Cation transport protein VEA_004055 PF02254 TrkA-N domain VEA_004055 PF02080 TrkA-C domain VEA_004056 PF00270 DEAD/DEAH box helicase VEA_004056 PF00271 Helicase conserved C-terminal domain VEA_004057 PF00571 CBS domain VEA_004057 PF03471 Transporter associated domain VEA_004057 PF01595 Cyclin M transmembrane N-terminal domain VEA_004059 PF04820 Tryptophan halogenase VEA_004064 PF00550 Phosphopantetheine attachment site VEA_004065 PF00550 Phosphopantetheine attachment site VEA_004068 PF07977 FabA-like domain VEA_004069 PF00535 Glycosyl transferase family 2 VEA_004070 PF00221 Aromatic amino acid lyase VEA_004075 PF02801 Beta-ketoacyl synthase, C-terminal domain VEA_004075 PF00109 Beta-ketoacyl synthase, N-terminal domain VEA_004076 PF07977 FabA-like domain VEA_004078 PF00109 Beta-ketoacyl synthase, N-terminal domain VEA_004078 PF02801 Beta-ketoacyl synthase, C-terminal domain VEA_004081 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VEA_004081 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VEA_004082 PF07670 Nucleoside recognition VEA_004082 PF07662 Na+ dependent nucleoside transporter C-terminus VEA_004082 PF01773 Na+ dependent nucleoside transporter N-terminus VEA_004083 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_004083 PF03466 LysR substrate binding domain VEA_004084 PF13406 Transglycosylase SLT domain VEA_004085 PF05166 YcgL domain VEA_004086 PF03775 Septum formation inhibitor MinC, C-terminal domain VEA_004086 PF05209 Septum formation inhibitor MinC, N-terminal domain VEA_004087 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VEA_004088 PF03776 Septum formation topological specificity factor MinE VEA_004089 PF00570 HRDC domain VEA_004089 PF01612 3'-5' exonuclease VEA_004090 PF00501 AMP-binding enzyme VEA_004090 PF13193 AMP-binding enzyme C-terminal domain VEA_004091 PF00561 alpha/beta hydrolase fold VEA_004092 PF03843 Outer membrane lipoprotein Slp family VEA_004094 PF00814 Glycoprotease family VEA_004095 PF04851 Type III restriction enzyme, res subunit VEA_004095 PF13307 Helicase C-terminal domain VEA_004096 PF01842 ACT domain VEA_004096 PF00551 Formyl transferase VEA_004097 PF00089 Trypsin VEA_004099 PF06185 YecM protein VEA_004100 PF03485 Arginyl tRNA synthetase N terminal domain VEA_004100 PF00750 tRNA synthetases class I (R) VEA_004100 PF05746 DALR anticodon binding domain VEA_004103 PF17910 FeoB cytosolic helical domain VEA_004103 PF07664 Ferrous iron transport protein B C terminus VEA_004103 PF07670 Nucleoside recognition VEA_004103 PF02421 Ferrous iron transport protein B VEA_004104 PF04023 FeoA domain VEA_004105 PF02311 AraC-like ligand binding domain VEA_004105 PF12833 Helix-turn-helix domain VEA_004106 PF01297 Zinc-uptake complex component A periplasmic VEA_004107 PF00005 ABC transporter VEA_004108 PF00950 ABC 3 transport family VEA_004109 PF02629 CoA binding domain VEA_004109 PF00549 CoA-ligase VEA_004110 PF00549 CoA-ligase VEA_004110 PF08442 ATP-grasp domain VEA_004111 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VEA_004111 PF02817 e3 binding domain VEA_004111 PF00364 Biotin-requiring enzyme VEA_004112 PF00676 Dehydrogenase E1 component VEA_004112 PF16078 2-oxoglutarate dehydrogenase N-terminus VEA_004112 PF02779 Transketolase, pyrimidine binding domain VEA_004112 PF16870 2-oxoglutarate dehydrogenase C-terminal VEA_004113 PF13085 2Fe-2S iron-sulfur cluster binding domain VEA_004114 PF00890 FAD binding domain VEA_004114 PF02910 Fumarate reductase flavoprotein C-term VEA_004115 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VEA_004116 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VEA_004117 PF00285 Citrate synthase, C-terminal domain VEA_004118 PF01784 NIF3 (NGG1p interacting factor 3) VEA_004120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VEA_004120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VEA_004120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VEA_004120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VEA_004121 PF17206 SeqA protein N-terminal domain VEA_004121 PF03925 SeqA protein C-terminal domain VEA_004122 PF12697 Alpha/beta hydrolase family VEA_004124 PF00258 Flavodoxin VEA_004126 PF01475 Ferric uptake regulator family VEA_004127 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VEA_004127 PF00749 tRNA synthetases class I (E and Q), catalytic domain VEA_004128 PF02378 Phosphotransferase system, EIIC VEA_004128 PF00367 phosphotransferase system, EIIB VEA_004129 PF01979 Amidohydrolase family VEA_004130 PF00480 ROK family VEA_004130 PF01047 MarR family VEA_004131 PF02254 TrkA-N domain VEA_004131 PF00999 Sodium/hydrogen exchanger family VEA_004132 PF00733 Asparagine synthase VEA_004132 PF13537 Glutamine amidotransferase domain VEA_004133 PF02357 Transcription termination factor nusG VEA_004134 PF00854 POT family VEA_004135 PF00762 Ferrochelatase VEA_004136 PF05191 Adenylate kinase, active site lid VEA_004137 PF00183 Hsp90 protein VEA_004137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_004138 PF00486 Transcriptional regulatory protein, C terminal VEA_004139 PF17323 Trans-membrane regulatory protein ToxS VEA_004142 PF12850 Calcineurin-like phosphoesterase superfamily domain VEA_004147 PF01370 NAD dependent epimerase/dehydratase family VEA_004147 PF08338 Domain of unknown function (DUF1731) VEA_004148 PF00106 short chain dehydrogenase VEA_004149 PF00085 Thioredoxin VEA_004150 PF16200 C-terminal region of band_7 VEA_004150 PF01145 SPFH domain / Band 7 family VEA_004152 PF03573 outer membrane porin, OprD family VEA_004153 PF00533 BRCA1 C Terminus (BRCT) domain VEA_004153 PF03120 NAD-dependent DNA ligase OB-fold domain VEA_004153 PF12826 Helix-hairpin-helix motif VEA_004153 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VEA_004153 PF01653 NAD-dependent DNA ligase adenylation domain VEA_004154 PF04354 ZipA, C-terminal FtsZ-binding domain VEA_004156 PF00291 Pyridoxal-phosphate dependent enzyme VEA_004157 PF00381 PTS HPr component phosphorylation site VEA_004158 PF02896 PEP-utilising enzyme, TIM barrel domain VEA_004158 PF05524 PEP-utilising enzyme, N-terminal VEA_004158 PF00391 PEP-utilising enzyme, mobile domain VEA_004159 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VEA_004160 PF00700 Bacterial flagellin C-terminal helical region VEA_004160 PF07196 Flagellin hook IN motif VEA_004160 PF00669 Bacterial flagellin N-terminal helical region VEA_004161 PF00669 Bacterial flagellin N-terminal helical region VEA_004161 PF00700 Bacterial flagellin C-terminal helical region VEA_004161 PF07196 Flagellin hook IN motif VEA_004162 PF00669 Bacterial flagellin N-terminal helical region VEA_004162 PF00700 Bacterial flagellin C-terminal helical region VEA_004162 PF07196 Flagellin hook IN motif VEA_004163 PF00669 Bacterial flagellin N-terminal helical region VEA_004164 PF07196 Flagellin hook IN motif VEA_004164 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_004165 PF10135 Rod binding protein VEA_004165 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VEA_004166 PF02119 Flagellar P-ring protein VEA_004167 PF02107 Flagellar L-ring protein VEA_004168 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_004168 PF00460 Flagella basal body rod protein VEA_004169 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_004169 PF00460 Flagella basal body rod protein VEA_004170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_004170 PF07559 Flagellar basal body protein FlaE VEA_004170 PF00460 Flagella basal body rod protein VEA_004171 PF13860 FlgD Ig-like domain VEA_004171 PF13861 FlgD Tudor-like domain VEA_004171 PF03963 Flagellar hook capping protein - N-terminal region VEA_004172 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VEA_004172 PF00460 Flagella basal body rod protein VEA_004173 PF00460 Flagella basal body rod protein VEA_004174 PF03705 CheR methyltransferase, all-alpha domain VEA_004174 PF01739 CheR methyltransferase, SAM binding domain VEA_004175 PF01584 CheW-like domain VEA_004175 PF00072 Response regulator receiver domain VEA_004183 PF00691 OmpA family VEA_004183 PF01389 OmpA-like transmembrane domain VEA_004184 PF00749 tRNA synthetases class I (E and Q), catalytic domain VEA_004185 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VEA_004186 PF13609 Gram-negative porin VEA_004188 PF00403 Heavy-metal-associated domain VEA_004191 PF00728 Glycosyl hydrolase family 20, catalytic domain VEA_004191 PF03173 Putative carbohydrate binding domain VEA_004191 PF02838 Glycosyl hydrolase family 20, domain 2 VEA_004191 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VEA_004195 PF01713 Smr domain VEA_004196 PF01479 S4 domain VEA_004196 PF00849 RNA pseudouridylate synthase VEA_004197 PF04073 Aminoacyl-tRNA editing domain VEA_004198 PF02872 5'-nucleotidase, C-terminal domain VEA_004198 PF00149 Calcineurin-like phosphoesterase VEA_004199 PF00793 DAHP synthetase I family VEA_004200 PF13369 Transglutaminase-like superfamily VEA_004201 PF04247 Invasion gene expression up-regulator, SirB VEA_004202 PF17827 PrmC N-terminal domain VEA_004202 PF13847 Methyltransferase domain VEA_004203 PF03462 PCRF domain VEA_004203 PF00472 RF-1 domain VEA_004204 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VEA_004204 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VEA_004204 PF01488 Shikimate / quinate 5-dehydrogenase VEA_004205 PF03550 Outer membrane lipoprotein LolB VEA_004206 PF08544 GHMP kinases C terminal VEA_004206 PF00288 GHMP kinases N terminal domain VEA_004207 PF14572 Phosphoribosyl synthetase-associated domain VEA_004207 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VEA_004208 PF01195 Peptidyl-tRNA hydrolase VEA_004209 PF01926 50S ribosome-binding GTPase VEA_004209 PF06071 Protein of unknown function (DUF933) VEA_004210 PF01494 FAD binding domain VEA_004211 PF00919 Uncharacterized protein family UPF0004 VEA_004211 PF01938 TRAM domain VEA_004211 PF04055 Radical SAM superfamily VEA_004212 PF02562 PhoH-like protein VEA_004213 PF02130 Uncharacterized protein family UPF0054 VEA_004214 PF00571 CBS domain VEA_004214 PF03471 Transporter associated domain VEA_004215 PF00795 Carbon-nitrogen hydrolase VEA_004216 PF07295 Zinc-ribbon containing domain VEA_004217 PF13603 Leucyl-tRNA synthetase, Domain 2 VEA_004217 PF00133 tRNA synthetases class I (I, L, M and V) VEA_004217 PF08264 Anticodon-binding domain of tRNA VEA_004218 PF04390 Lipopolysaccharide-assembly VEA_004219 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VEA_004219 PF06144 DNA polymerase III, delta subunit VEA_004221 PF02590 Predicted SPOUT methyltransferase VEA_004222 PF00905 Penicillin binding protein transpeptidase domain VEA_004222 PF03717 Penicillin-binding Protein dimerisation domain VEA_004223 PF01098 Cell cycle protein VEA_004224 PF03330 Lytic transglycolase VEA_004224 PF05036 Sporulation related domain VEA_004225 PF00768 D-alanyl-D-alanine carboxypeptidase VEA_004225 PF07943 Penicillin-binding protein 5, C-terminal domain VEA_004226 PF04359 Protein of unknown function (DUF493) VEA_004227 PF03099 Biotin/lipoate A/B protein ligase family VEA_004228 PF04055 Radical SAM superfamily VEA_004228 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VEA_004230 PF00464 Serine hydroxymethyltransferase VEA_004231 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VEA_004231 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VEA_004234 PF16657 Maltogenic Amylase, C-terminal domain VEA_004234 PF00128 Alpha amylase, catalytic domain VEA_004235 PF00367 phosphotransferase system, EIIB VEA_004235 PF02378 Phosphotransferase system, EIIC VEA_004236 PF00356 Bacterial regulatory proteins, lacI family VEA_004238 PF00005 ABC transporter VEA_004238 PF09383 NIL domain VEA_004239 PF00528 Binding-protein-dependent transport system inner membrane component VEA_004240 PF03180 NLPA lipoprotein VEA_004241 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VEA_004242 PF07348 Syd protein (SUKH-2) VEA_004244 PF14489 QueF-like protein VEA_004244 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VEA_004246 PF00072 Response regulator receiver domain VEA_004246 PF00990 Diguanylate cyclase, GGDEF domain VEA_004247 PF11892 Domain of unknown function (DUF3412) VEA_004247 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VEA_004247 PF03641 Possible lysine decarboxylase VEA_004248 PF01367 5'-3' exonuclease, C-terminal SAM fold VEA_004248 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VEA_004249 PF18125 RlmM ferredoxin-like domain VEA_004249 PF01728 FtsJ-like methyltransferase VEA_004250 PF04241 Protein of unknown function (DUF423) VEA_004252 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_004252 PF03466 LysR substrate binding domain VEA_004253 PF02926 THUMP domain VEA_004253 PF02568 Thiamine biosynthesis protein (ThiI) VEA_004254 PF00691 OmpA family VEA_004254 PF13677 Membrane MotB of proton-channel complex MotA/MotB VEA_004255 PF01618 MotA/TolQ/ExbB proton channel family VEA_004256 PF02609 Exonuclease VII small subunit VEA_004257 PF00348 Polyprenyl synthetase VEA_004258 PF02780 Transketolase, C-terminal domain VEA_004258 PF02779 Transketolase, pyrimidine binding domain VEA_004258 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VEA_004259 PF04608 Phosphatidylglycerophosphatase A VEA_004260 PF00586 AIR synthase related protein, N-terminal domain VEA_004260 PF02769 AIR synthase related protein, C-terminal domain VEA_004261 PF01029 NusB family VEA_004262 PF00885 6,7-dimethyl-8-ribityllumazine synthase VEA_004263 PF00925 GTP cyclohydrolase II VEA_004263 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VEA_004264 PF00677 Lumazine binding domain VEA_004265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VEA_004265 PF01872 RibD C-terminal domain VEA_004266 PF03477 ATP cone domain VEA_004267 PF00171 Aldehyde dehydrogenase family VEA_004268 PF00696 Amino acid kinase family VEA_004268 PF01472 PUA domain VEA_004269 PF07417 Sigma factor-binding transcriptional regulator Crl VEA_004271 PF00156 Phosphoribosyl transferase domain VEA_004272 PF00860 Permease family VEA_004273 PF07687 Peptidase dimerisation domain VEA_004273 PF01546 Peptidase family M20/M25/M40 VEA_004277 PF07715 TonB-dependent Receptor Plug Domain VEA_004277 PF00593 TonB dependent receptor VEA_004280 PF02769 AIR synthase related protein, C-terminal domain VEA_004280 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VEA_004280 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VEA_004281 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_004281 PF01464 Transglycosylase SLT domain VEA_004282 PF14437 MafB19-like deaminase VEA_004283 PF03806 AbgT putative transporter family VEA_004288 PF00114 Pilin (bacterial filament) VEA_004288 PF07963 Prokaryotic N-terminal methylation motif VEA_004289 PF01556 DnaJ C terminal domain VEA_004289 PF00684 DnaJ central domain VEA_004289 PF00226 DnaJ domain VEA_004291 PF00012 Hsp70 protein VEA_004292 PF00375 Sodium:dicarboxylate symporter family VEA_004293 PF01025 GrpE VEA_004294 PF01513 ATP-NAD kinase VEA_004296 PF02463 RecF/RecN/SMC N terminal domain VEA_004297 PF04355 SmpA / OmlA family VEA_004298 PF03658 RnfH family Ubiquitin VEA_004299 PF03364 Polyketide cyclase / dehydrase and lipid transport VEA_004300 PF01668 SmpB protein VEA_004301 PF00589 Phage integrase family VEA_004301 PF13356 Arm DNA-binding domain VEA_004302 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VEA_004307 PF02796 Helix-turn-helix domain of resolvase VEA_004307 PF00239 Resolvase, N terminal domain VEA_004310 PF05930 Prophage CP4-57 regulatory protein (AlpA) VEA_004316 PF03466 LysR substrate binding domain VEA_004316 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_004318 PF00795 Carbon-nitrogen hydrolase VEA_004318 PF00583 Acetyltransferase (GNAT) family VEA_004322 PF00202 Aminotransferase class-III VEA_004323 PF01053 Cys/Met metabolism PLP-dependent enzyme VEA_004324 PF07969 Amidohydrolase family VEA_004326 PF01266 FAD dependent oxidoreductase VEA_004327 PF01235 Sodium:alanine symporter family VEA_004328 PF01184 GPR1/FUN34/yaaH family VEA_004329 PF06483 Chitinase C VEA_004329 PF00704 Glycosyl hydrolases family 18 VEA_004330 PF03553 Na+/H+ antiporter family VEA_004339 PF13356 Arm DNA-binding domain VEA_004339 PF00589 Phage integrase family VEA_004340 PF00117 Glutamine amidotransferase class-I VEA_004340 PF02540 NAD synthase VEA_004340 PF00958 GMP synthase C terminal domain VEA_004341 PF00478 IMP dehydrogenase / GMP reductase domain VEA_004341 PF00571 CBS domain VEA_004342 PF13742 OB-fold nucleic acid binding domain VEA_004342 PF02601 Exonuclease VII, large subunit VEA_004345 PF01926 50S ribosome-binding GTPase VEA_004345 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VEA_004346 PF13360 PQQ-like domain VEA_004347 PF09976 Tetratricopeptide repeat-like domain VEA_004348 PF13393 Histidyl-tRNA synthetase VEA_004348 PF03129 Anticodon binding domain VEA_004349 PF04551 GcpE protein VEA_004350 PF13464 Domain of unknown function (DUF4115) VEA_004351 PF04055 Radical SAM superfamily VEA_004352 PF00334 Nucleoside diphosphate kinase VEA_004353 PF00883 Cytosol aminopeptidase family, catalytic domain VEA_004353 PF12404 Peptidase VEA_004354 PF04384 Iron-sulphur cluster assembly VEA_004355 PF00111 2Fe-2S iron-sulfur cluster binding domain VEA_004356 PF00012 Hsp70 protein VEA_004357 PF00226 DnaJ domain VEA_004357 PF07743 HSCB C-terminal oligomerisation domain VEA_004358 PF01521 Iron-sulphur cluster biosynthesis VEA_004359 PF01592 NifU-like N terminal domain VEA_004360 PF00266 Aminotransferase class-V VEA_004361 PF02082 Transcriptional regulator VEA_004362 PF00588 SpoU rRNA Methylase family VEA_004363 PF00459 Inositol monophosphatase family VEA_004364 PF02355 Protein export membrane protein VEA_004364 PF07549 SecD/SecF GG Motif VEA_004365 PF02355 Protein export membrane protein VEA_004365 PF13721 SecD export protein N-terminal TM region VEA_004365 PF07549 SecD/SecF GG Motif VEA_004366 PF02699 Preprotein translocase subunit VEA_004367 PF01702 Queuine tRNA-ribosyltransferase VEA_004368 PF02547 Queuosine biosynthesis protein VEA_004370 PF00571 CBS domain VEA_004371 PF00463 Isocitrate lyase family VEA_004372 PF01274 Malate synthase VEA_004373 PF03466 LysR substrate binding domain VEA_004373 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_004374 PF00578 AhpC/TSA family VEA_004374 PF10417 C-terminal domain of 1-Cys peroxiredoxin VEA_004375 PF03932 CutC family VEA_004376 PF03976 Polyphosphate kinase 2 (PPK2) VEA_004377 PF01895 PhoU domain VEA_004378 PF00005 ABC transporter VEA_004379 PF00528 Binding-protein-dependent transport system inner membrane component VEA_004380 PF00528 Binding-protein-dependent transport system inner membrane component VEA_004381 PF13090 Polyphosphate kinase C-terminal domain 2 VEA_004381 PF17941 Polyphosphate kinase C-terminal domain 1 VEA_004381 PF02503 Polyphosphate kinase middle domain VEA_004381 PF13089 Polyphosphate kinase N-terminal domain VEA_004382 PF02541 Ppx/GppA phosphatase family VEA_004383 PF12849 PBP superfamily domain VEA_004384 PF00512 His Kinase A (phospho-acceptor) domain VEA_004384 PF11808 Phosphate regulon sensor protein PhoR VEA_004384 PF00989 PAS fold VEA_004384 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_004385 PF00072 Response regulator receiver domain VEA_004385 PF00486 Transcriptional regulatory protein, C terminal VEA_004386 PF04381 Putative exonuclease, RdgC VEA_004388 PF12838 4Fe-4S dicluster domain VEA_004390 PF03411 Penicillin-insensitive murein endopeptidase VEA_004392 PF07724 AAA domain (Cdc48 subfamily) VEA_004392 PF02861 Clp amino terminal domain, pathogenicity island component VEA_004392 PF00004 ATPase family associated with various cellular activities (AAA) VEA_004392 PF17871 AAA lid domain VEA_004392 PF10431 C-terminal, D2-small domain, of ClpB protein VEA_004394 PF01479 S4 domain VEA_004394 PF00849 RNA pseudouridylate synthase VEA_004395 PF13525 Outer membrane lipoprotein VEA_004396 PF00497 Bacterial extracellular solute-binding proteins, family 3 VEA_004396 PF01464 Transglycosylase SLT domain VEA_004397 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VEA_004398 PF00800 Prephenate dehydratase VEA_004398 PF01817 Chorismate mutase type II VEA_004399 PF01931 Protein of unknown function DUF84 VEA_004400 PF01371 Trp repressor protein VEA_004401 PF14718 Soluble lytic murein transglycosylase L domain VEA_004401 PF01464 Transglycosylase SLT domain VEA_004402 PF00005 ABC transporter VEA_004402 PF12848 ABC transporter VEA_004403 PF07238 PilZ domain VEA_004404 PF01464 Transglycosylase SLT domain VEA_004404 PF10145 Phage-related minor tail protein VEA_004404 PF01551 Peptidase family M23 VEA_004405 PF02153 Prephenate dehydrogenase VEA_004405 PF01817 Chorismate mutase type II VEA_004406 PF00793 DAHP synthetase I family VEA_004407 PF00933 Glycosyl hydrolase family 3 N terminal domain VEA_004408 PF03702 Anhydro-N-acetylmuramic acid kinase VEA_004409 PF01380 SIS domain VEA_004412 PF02554 Carbon starvation protein CstA VEA_004413 PF06580 Histidine kinase VEA_004413 PF07694 5TMR of 5TMR-LYT VEA_004414 PF04397 LytTr DNA-binding domain VEA_004414 PF00072 Response regulator receiver domain VEA_004416 PF02401 LytB protein VEA_004417 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VEA_004418 PF01252 Signal peptidase (SPase) II VEA_004419 PF08264 Anticodon-binding domain of tRNA VEA_004419 PF06827 Zinc finger found in FPG and IleRS VEA_004419 PF00133 tRNA synthetases class I (I, L, M and V) VEA_004420 PF01687 Riboflavin kinase VEA_004420 PF06574 FAD synthetase VEA_004421 PF03023 Lipid II flippase MurJ VEA_004422 PF01649 Ribosomal protein S20 VEA_004423 PF01022 Bacterial regulatory protein, arsR family VEA_004424 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VEA_004424 PF03466 LysR substrate binding domain VEA_004425 PF02690 Na+/Pi-cotransporter VEA_004427 PF00303 Thymidylate synthase VEA_004429 PF01925 Sulfite exporter TauE/SafE VEA_004430 PF01590 GAF domain VEA_004430 PF05524 PEP-utilising enzyme, N-terminal VEA_004430 PF02896 PEP-utilising enzyme, TIM barrel domain VEA_004430 PF00391 PEP-utilising enzyme, mobile domain VEA_004431 PF00293 NUDIX domain VEA_004432 PF02976 DNA mismatch repair enzyme MutH VEA_004434 PF00248 Aldo/keto reductase family VEA_004436 PF00072 Response regulator receiver domain VEA_004436 PF00158 Sigma-54 interaction domain VEA_004436 PF02954 Bacterial regulatory protein, Fis family VEA_004437 PF01336 OB-fold nucleic acid binding domain VEA_004437 PF00152 tRNA synthetases class II (D, K and N) VEA_004438 PF00472 RF-1 domain VEA_004438 PF03462 PCRF domain VEA_004439 PF01368 DHH family VEA_004439 PF17768 RecJ OB domain VEA_004439 PF02272 DHHA1 domain VEA_004440 PF13098 Thioredoxin-like domain VEA_004440 PF10411 Disulfide bond isomerase protein N-terminus VEA_004441 PF02899 Phage integrase, N-terminal SAM-like domain VEA_004441 PF00589 Phage integrase family VEA_004442 PF00258 Flavodoxin VEA_004443 PF05525 Branched-chain amino acid transport protein VEA_004444 PF05175 Methyltransferase small domain VEA_004445 PF00270 DEAD/DEAH box helicase VEA_004445 PF00271 Helicase conserved C-terminal domain VEA_004446 PF03883 Peroxide stress protein YaaA VEA_004447 PF01235 Sodium:alanine symporter family VEA_004450 PF03167 Uracil DNA glycosylase superfamily VEA_004452 PF01261 Xylose isomerase-like TIM barrel VEA_004453 PF01228 Glycine radical VEA_004455 PF00291 Pyridoxal-phosphate dependent enzyme VEA_004455 PF14821 Threonine synthase N terminus VEA_004456 PF00288 GHMP kinases N terminal domain VEA_004456 PF08544 GHMP kinases C terminal VEA_004457 PF00696 Amino acid kinase family VEA_004457 PF01842 ACT domain VEA_004457 PF00742 Homoserine dehydrogenase VEA_004457 PF03447 Homoserine dehydrogenase, NAD binding domain VEA_004457 PF13840 ACT domain VEA_004459 PF03737 Aldolase/RraA VEA_004461 PF00072 Response regulator receiver domain VEA_004461 PF00486 Transcriptional regulatory protein, C terminal VEA_004463 PF00989 PAS fold VEA_004463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_004463 PF00512 His Kinase A (phospho-acceptor) domain VEA_004463 PF18415 Histidine kinase receptor ArcB trans-membrane domain VEA_004463 PF01627 Hpt domain VEA_004463 PF00072 Response regulator receiver domain VEA_004464 PF00990 Diguanylate cyclase, GGDEF domain VEA_004464 PF01590 GAF domain VEA_004464 PF00563 EAL domain VEA_004464 PF00360 Phytochrome region VEA_004465 PF16199 Radical_SAM C-terminal domain VEA_004465 PF04055 Radical SAM superfamily VEA_004466 PF01645 Conserved region in glutamate synthase VEA_004466 PF01493 GXGXG motif VEA_004466 PF00310 Glutamine amidotransferases class-II VEA_004466 PF04898 Glutamate synthase central domain VEA_004467 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_004467 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VEA_004468 PF00310 Glutamine amidotransferases class-II VEA_004468 PF01493 GXGXG motif VEA_004468 PF04898 Glutamate synthase central domain VEA_004468 PF01645 Conserved region in glutamate synthase VEA_004469 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VEA_004469 PF07992 Pyridine nucleotide-disulphide oxidoreductase VEA_004471 PF01048 Phosphorylase superfamily VEA_004472 PF03186 CobD/Cbib protein VEA_004472 PF17113 Regulatory signalling modulator protein AmpE VEA_004473 PF01497 Periplasmic binding protein VEA_004474 PF03458 UPF0126 domain VEA_004476 PF01925 Sulfite exporter TauE/SafE VEA_004478 PF02142 MGS-like domain VEA_004478 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VEA_004478 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VEA_004479 PF00117 Glutamine amidotransferase class-I VEA_004479 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VEA_004481 PF05173 Dihydrodipicolinate reductase, C-terminus VEA_004481 PF01113 Dihydrodipicolinate reductase, N-terminus VEA_004482 PF00293 NUDIX domain VEA_004483 PF02810 SEC-C motif VEA_004483 PF07517 SecA DEAD-like domain VEA_004483 PF01043 SecA preprotein cross-linking domain VEA_004483 PF07516 SecA Wing and Scaffold domain VEA_004485 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VEA_004486 PF00091 Tubulin/FtsZ family, GTPase domain VEA_004486 PF12327 FtsZ family, C-terminal domain VEA_004487 PF02491 SHS2 domain inserted in FTSA VEA_004488 PF03799 Cell division protein FtsQ VEA_004488 PF08478 POTRA domain, FtsQ-type VEA_004489 PF01225 Mur ligase family, catalytic domain VEA_004489 PF02875 Mur ligase family, glutamate ligase domain VEA_004489 PF08245 Mur ligase middle domain VEA_004490 PF03033 Glycosyltransferase family 28 N-terminal domain VEA_004490 PF04101 Glycosyltransferase family 28 C-terminal domain VEA_004491 PF01098 Cell cycle protein VEA_004492 PF02875 Mur ligase family, glutamate ligase domain VEA_004492 PF08245 Mur ligase middle domain VEA_004493 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VEA_004493 PF00953 Glycosyl transferase family 4 VEA_004494 PF08245 Mur ligase middle domain VEA_004494 PF02875 Mur ligase family, glutamate ligase domain VEA_004494 PF01225 Mur ligase family, catalytic domain VEA_004495 PF08245 Mur ligase middle domain VEA_004495 PF02875 Mur ligase family, glutamate ligase domain VEA_004495 PF01225 Mur ligase family, catalytic domain VEA_004496 PF00905 Penicillin binding protein transpeptidase domain VEA_004496 PF03717 Penicillin-binding Protein dimerisation domain VEA_004497 PF04999 Cell division protein FtsL VEA_004498 PF01795 MraW methylase family VEA_004500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VEA_004501 PF04348 LppC putative lipoprotein VEA_004502 PF02021 Uncharacterised protein family UPF0102 VEA_004503 PF13580 SIS domain VEA_004504 PF04972 BON domain VEA_004505 PF04386 Stringent starvation protein B VEA_004506 PF02798 Glutathione S-transferase, N-terminal domain VEA_004506 PF00043 Glutathione S-transferase, C-terminal domain VEA_004507 PF02167 Cytochrome C1 family VEA_004508 PF00033 Cytochrome b/b6/petB VEA_004508 PF00032 Cytochrome b(C-terminal)/b6/petD VEA_004509 PF00355 Rieske [2Fe-2S] domain VEA_004509 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VEA_004510 PF00380 Ribosomal protein S9/S16 VEA_004511 PF00572 Ribosomal protein L13 VEA_004512 PF03969 AFG1-like ATPase VEA_004513 PF06295 Protein of unknown function (DUF1043) VEA_004514 PF00595 PDZ domain VEA_004515 PF13180 PDZ domain VEA_004516 PF00521 DNA gyrase/topoisomerase IV, subunit A VEA_004516 PF03989 DNA gyrase C-terminal domain, beta-propeller VEA_004517 PF01751 Toprim domain VEA_004517 PF00986 DNA gyrase B subunit, carboxyl terminus VEA_004517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VEA_004517 PF00204 DNA gyrase B VEA_004518 PF05728 Uncharacterised protein family (UPF0227) VEA_004519 PF00149 Calcineurin-like phosphoesterase VEA_004520 PF06853 Protein of unknown function (DUF1249) VEA_004521 PF00293 NUDIX domain VEA_004522 PF02321 Outer membrane efflux protein VEA_004523 PF00294 pfkB family carbohydrate kinase VEA_004523 PF01467 Cytidylyltransferase-like VEA_004524 PF08335 GlnD PII-uridylyltransferase VEA_004524 PF03710 Glutamate-ammonia ligase adenylyltransferase VEA_004525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VEA_004525 PF00672 HAMP domain VEA_004525 PF02743 Cache domain VEA_004527 PF01928 CYTH domain VEA_004528 PF01865 Protein of unknown function DUF47 VEA_004529 PF01384 Phosphate transporter family