locus-tag	class	description
D0784_00010	COG0592	DNA-directed DNA polymerase activity
D0784_00020	COG0187	DNA topoisomerase II activity
D0784_00025	COG0071	Belongs to the small heat shock protein (HSP20) family
D0784_00030	COG3977	Valine--pyruvate aminotransferase
D0784_00045	COG2119	membrane
D0784_00055	COG0425	Belongs to the sulfur carrier protein TusA family
D0784_00070	COG0604	alcohol dehydrogenase
D0784_00075	COG0183	Belongs to the thiolase family
D0784_00085	COG1739	Uncharacterized protein family UPF0029
D0784_00090	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D0784_00140	COG0583	DNA-binding transcription factor activity
D0784_00145	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
D0784_00150	COG2960	long-chain fatty acid transporting porin activity
D0784_00160	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0784_00165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0784_00170	COG1309	transcriptional regulator
D0784_00220	COG4172	Belongs to the ABC transporter superfamily
D0784_00225	COG4166	transmembrane transport
D0784_00235	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0784_00270	COG1609	Transcriptional regulator
D0784_00275	COG0583	DNA-binding transcription factor activity
D0784_00280	COG2076	Multidrug Resistance protein
D0784_00295	COG0129	dihydroxy-acid dehydratase activity
D0784_00300	COG3265	gluconokinase activity
D0784_00305	COG2610	gluconate transmembrane transporter activity
D0784_00310	COG0800	Aldolase
D0784_00315	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D0784_00325	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
D0784_00340	COG1522	sequence-specific DNA binding
D0784_00345	COG5002	protein histidine kinase activity
D0784_00345	COG5001	Diguanylate cyclase
D0784_00360	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
D0784_00375	COG0697	spore germination
D0784_00380	COG0589	response to stress
D0784_00385	COG1528	Iron-storage protein
D0784_00395	COG2081	HI0933 family
D0784_00420	COG1910	domain protein
D0784_00435	COG1322	Protein conserved in bacteria
D0784_00445	COG3165	ubiquinone biosynthetic process from chorismate
D0784_00465	COG0805	protein transport
D0784_00470	COG0084	hydrolase, TatD family'
D0784_00490	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D0784_00490	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
D0784_00500	COG0218	Necessary for normal cell division and for the maintenance of normal septation
D0784_00540	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D0784_00545	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
D0784_00550	COG5001	Diguanylate cyclase
D0784_00550	COG3300	MHYT domain
D0784_00555	COG2204	response regulator
D0784_00560	COG3852	Histidine kinase
D0784_00570	COG0174	glutamine synthetase
D0784_00600	COG1490	D-aminoacyl-tRNA deacylase activity
D0784_00605	COG0456	acetyltransferase
D0784_00625	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
D0784_00630	COG3031	protein transport across the cell outer membrane
D0784_00640	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D0784_00645	COG1459	type II secretion system
D0784_00650	COG2165	general secretion pathway protein
D0784_00655	COG2165	general secretion pathway protein
D0784_00660	COG2165	general secretion pathway protein
D0784_00665	COG4795	General secretion pathway protein
D0784_00670	COG3156	type II secretion system protein K
D0784_00675	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
D0784_00680	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
D0784_00690	COG1218	3'(2'),5'-bisphosphate nucleotidase
D0784_00695	COG0494	nUDIX hydrolase
D0784_00705	COG1040	competence protein
D0784_00720	COG2183	response to ionizing radiation
D0784_00755	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D0784_00815	COG0464	growth
D0784_00845	COG0745	RESPONSE REGULATOR receiver
D0784_00850	COG2205	protein histidine kinase activity
D0784_00855	COG2233	PERMEase
D0784_00865	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
D0784_00870	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0784_00875	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D0784_00880	COG1758	RNA polymerase activity
D0784_00885	COG0194	GDP metabolic process
D0784_00900	COG0848	biopolymer transport protein
D0784_00905	COG0811	peptide transport
D0784_00920	COG4206	TonB-dependent receptor
D0784_00925	COG4174	ABC transporter (Permease)
D0784_00930	COG4239	(ABC) transporter, permease
D0784_00935	COG0747	negative chemotaxis
D0784_00940	COG0444	Belongs to the ABC transporter superfamily
D0784_00945	COG4608	Belongs to the ABC transporter superfamily
D0784_00965	COG1561	YicC-like family, N-terminal region
D0784_00970	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
D0784_00980	COG1560	Kdo2-lipid A biosynthetic process
D0784_00990	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
D0784_01050	COG0859	PFAM glycosyl transferase family 9
D0784_01060	COG2089	acid synthase
D0784_01070	COG0438	transferase activity, transferring glycosyl groups
D0784_01075	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
D0784_01095	COG1519	Transferase
D0784_01100	COG0859	PFAM glycosyl transferase family 9
D0784_01105	COG1560	Kdo2-lipid A biosynthetic process
D0784_01115	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0784_01155	COG2089	acid synthase
D0784_01195	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
D0784_01215	COG0149	triose-phosphate isomerase activity
D0784_01245	COG1494	fructose-1,6-bisphosphatase
D0784_01260	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
D0784_01265	COG1575	Belongs to the MenA family. Type 1 subfamily
D0784_01285	COG1609	Transcriptional regulator
D0784_01290	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
D0784_01310	COG0088	Forms part of the polypeptide exit tunnel
D0784_01395	COG1841	ribosomal large subunit assembly
D0784_01405	COG0201	protein transport
D0784_01415	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
D0784_01420	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
D0784_01430	COG0202	RNA polymerase activity
D0784_01435	COG0203	ribosomal protein L17
D0784_01445	COG0545	Peptidyl-prolyl cis-trans isomerase
D0784_01460	COG2153	protein acetylation
D0784_01465	COG0513	Belongs to the DEAD box helicase family
D0784_01475	COG0737	Belongs to the 5'-nucleotidase family
D0784_01480	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
D0784_01480	COG1648	precorrin-2 dehydrogenase activity
D0784_01495	COG3273	potassium ion transport
D0784_01495	COG0471	metal ion transport
D0784_01500	COG0529	Catalyzes the synthesis of activated sulfate
D0784_01520	COG1136	(ABC) transporter
D0784_01535	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
D0784_01545	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D0784_01550	COG0729	surface antigen
D0784_01555	COG2911	Protein conserved in bacteria
D0784_01560	COG2105	PFAM AIG2 family protein
D0784_01575	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
D0784_01585	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
D0784_01590	COG0163	prenyltransferase activity
D0784_01595	COG4143	(ABC) transporter
D0784_01600	COG1178	ABC-type Fe3 transport system permease component
D0784_01605	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
D0784_01640	COG0142	geranyltranstransferase activity
D0784_01645	COG0261	This protein binds to 23S rRNA in the presence of protein L20
D0784_01660	COG2966	Psort location CytoplasmicMembrane, score
D0784_01665	COG3610	response to peptide
D0784_01690	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
D0784_01695	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0784_01700	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
D0784_01705	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
D0784_01725	COG0473	3-isopropylmalate dehydrogenase activity
D0784_01730	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
D0784_01760	COG0583	DNA-binding transcription factor activity
D0784_01765	COG1022	Amp-dependent synthetase and ligase
D0784_01770	COG0028	Belongs to the TPP enzyme family
D0784_01775	COG0440	acetolactate synthase activity
D0784_01780	COG3706	GGDEF domain
D0784_01790	COG0469	pyruvate kinase activity
D0784_01795	COG1349	DNA-binding transcription factor activity
D0784_01800	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
D0784_01820	COG5002	protein histidine kinase activity
D0784_01825	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0784_01830	COG3722	fumarate hydratase activity
D0784_01840	COG2213	PTS system mannitol-specific
D0784_01840	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0784_01875	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D0784_01880	COG0358	DNA primase activity
D0784_01885	COG1610	YqeY-like protein
D0784_01890	COG0828	Belongs to the bacterial ribosomal protein bS21 family
D0784_01895	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
D0784_01900	COG0596	Alpha beta hydrolase
D0784_01910	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
D0784_01915	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
D0784_01930	COG3409	Peptidoglycan-binding domain 1 protein
D0784_01930	COG3267	Type II secretory pathway component ExeA
D0784_01940	COG0405	Gamma-glutamyltransferase
D0784_01945	COG4991	sh3 domain protein
D0784_01950	COG0306	phosphate transporter
D0784_01955	COG1392	Phosphate transport regulator
D0784_01960	COG3025	triphosphatase activity
D0784_01965	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D0784_01975	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
D0784_01985	COG1538	Outer membrane efflux protein
D0784_01990	COG0494	nUDIX hydrolase
D0784_01995	COG3151	Protein conserved in bacteria
D0784_02005	COG3150	esterase
D0784_02010	COG0187	DNA topoisomerase II activity
D0784_02015	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
D0784_02020	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0784_02025	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
D0784_02030	COG3105	Protein conserved in bacteria
D0784_02040	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
D0784_02060	COG0723	plastoquinol--plastocyanin reductase activity
D0784_02065	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
D0784_02070	COG2857	Cytochrome c1
D0784_02075	COG0625	glutathione transferase activity
D0784_02080	COG2969	positive regulation of protein catabolic process
D0784_02085	COG2823	Periplasmic or secreted lipoprotein
D0784_02090	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
D0784_02105	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
D0784_02125	COG3116	cell division
D0784_02130	COG0768	penicillin binding
D0784_02135	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
D0784_02140	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
D0784_02155	COG0772	Belongs to the SEDS family
D0784_02170	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
D0784_02175	COG0849	cell division
D0784_02180	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
D0784_02200	COG0494	nUDIX hydrolase
D0784_02210	COG0505	Belongs to the CarA family
D0784_02215	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
D0784_02240	COG0730	response to heat
D0784_02245	COG0583	DNA-binding transcription factor activity
D0784_02250	COG2860	membrane
D0784_02275	COG0493	'glutamate synthase
D0784_02280	COG0067	glutamate synthase
D0784_02280	COG0069	glutamate synthase activity
D0784_02280	COG0070	glutamate synthase
D0784_02290	COG0070	glutamate synthase
D0784_02290	COG0069	glutamate synthase activity
D0784_02290	COG0067	glutamate synthase
D0784_02295	COG1242	4 iron, 4 sulfur cluster binding
D0784_02300	COG5001	Diguanylate cyclase
D0784_02300	COG4251	negative regulation of phosphorylation
D0784_02300	COG2203	Gaf domain
D0784_02300	COG3706	GGDEF domain
D0784_02310	COG0784	Response regulator, receiver
D0784_02310	COG5002	protein histidine kinase activity
D0784_02310	COG2198	Histidine kinase
D0784_02320	COG0745	RESPONSE REGULATOR receiver
D0784_02335	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
D0784_02350	COG0083	homoserine kinase activity
D0784_02355	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
D0784_02390	COG1115	amino acid carrier protein
D0784_02395	COG3022	response to hydroperoxide
D0784_02405	COG0513	Belongs to the DEAD box helicase family
D0784_02420	COG0716	FMN binding
D0784_02430	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0784_02435	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
D0784_02460	COG0667	Aldo Keto reductase
D0784_02485	COG0730	response to heat
D0784_02500	COG1283	sodium-dependent phosphate transmembrane transporter activity
D0784_02505	COG0583	DNA-binding transcription factor activity
D0784_02510	COG0640	Transcriptional regulator
D0784_02515	COG0268	Binds directly to 16S ribosomal RNA
D0784_02520	COG0728	peptidoglycan biosynthetic process
D0784_02525	COG0196	riboflavin kinase activity
D0784_02540	COG1047	Peptidyl-prolyl cis-trans
D0784_02545	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
D0784_02550	COG3279	Response regulator of the LytR AlgR family
D0784_02555	COG3275	phosphorelay sensor kinase activity
D0784_02560	COG1966	Carbon starvation protein
D0784_02580	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
D0784_02585	COG1472	Belongs to the glycosyl hydrolase 3 family
D0784_02590	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0784_02595	COG0287	Prephenate dehydrogenase
D0784_02595	COG1605	Chorismate mutase
D0784_02600	COG0739	heme binding
D0784_02610	COG0488	(ABC) transporter
D0784_02625	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
D0784_02630	COG0077	Prephenate dehydratase
D0784_02630	COG1605	Chorismate mutase
D0784_02635	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D0784_02640	COG0741	lytic transglycosylase activity
D0784_02645	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0784_02650	COG0564	pseudouridine synthase activity
D0784_02660	COG0542	response to heat
D0784_02720	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
D0784_02735	COG0745	RESPONSE REGULATOR receiver
D0784_02740	COG5002	protein histidine kinase activity
D0784_02750	COG0248	Ppx GppA phosphatase
D0784_02755	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
D0784_02760	COG0573	inorganic phosphate transmembrane transporter activity
D0784_02765	COG0581	inorganic phosphate transmembrane transporter activity
D0784_02770	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D0784_02775	COG0704	Plays a role in the regulation of phosphate uptake
D0784_02805	COG0450	alkyl hydroperoxide reductase
D0784_02810	COG0583	DNA-binding transcription factor activity
D0784_02815	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
D0784_02825	COG0517	IMP dehydrogenase activity
D0784_02850	COG1862	Preprotein translocase
D0784_02855	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D0784_02860	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D0784_02870	COG0483	inositol monophosphate 1-phosphatase activity
D0784_02875	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
D0784_02890	COG0822	iron-sulfur transferase activity
D0784_02895	COG0316	Belongs to the HesB IscA family
D0784_02910	COG0633	Ferredoxin
D0784_02915	COG2975	iron-sulfur cluster assembly
D0784_02950	COG2976	Protein conserved in bacteria
D0784_02955	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0784_02970	COG2199	diguanylate cyclase activity
D0784_02970	COG2203	Gaf domain
D0784_02985	COG0517	IMP dehydrogenase activity
D0784_02985	COG0516	GMP reductase activity
D0784_02995	COG1757	Na H antiporter
D0784_03005	COG1584	GPR1 FUN34 yaaH family protein
D0784_03010	COG1115	amino acid carrier protein
D0784_03020	COG0583	DNA-binding transcription factor activity
D0784_03040	COG0668	transmembrane transport
D0784_03045	COG1574	metal-dependent hydrolase with the TIM-barrel fold
D0784_03050	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D0784_03070	COG1289	transmembrane transporter activity
D0784_03075	COG0583	DNA-binding transcription factor activity
D0784_03090	COG2867	negative regulation of translational initiation
D0784_03095	COG2914	Belongs to the UPF0125 (RnfH) family
D0784_03100	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
D0784_03110	COG0497	DNA recombination
D0784_03125	COG1301	dicarboxylic acid transport
D0784_03165	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
D0784_03170	COG0590	tRNA wobble adenosine to inosine editing
D0784_03185	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
D0784_03185	COG0047	phosphoribosylformylglycinamidine synthase activity
D0784_03210	COG2195	Cleaves the N-terminal amino acid of tripeptides
D0784_03215	COG2252	PERMEase
D0784_03240	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
D0784_03245	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
D0784_03250	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D0784_03250	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
D0784_03275	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
D0784_03280	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
D0784_03290	COG0142	geranyltranstransferase activity
D0784_03300	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
D0784_03315	COG0583	DNA-binding transcription factor activity
D0784_03325	COG2363	Small membrane protein
D0784_03345	COG1611	Belongs to the LOG family
D0784_03350	COG3706	GGDEF domain
D0784_03350	COG0745	RESPONSE REGULATOR receiver
D0784_03370	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
D0784_03375	COG0737	Belongs to the 5'-nucleotidase family
D0784_03385	COG1464	Belongs to the NlpA lipoprotein family
D0784_03390	COG2011	ABC-type metal ion transport system permease component
D0784_03395	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
D0784_03400	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
D0784_03410	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0784_03410	COG1263	PTS System
D0784_03415	COG0366	Alpha amylase catalytic
D0784_03420	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D0784_03425	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
D0784_03445	COG1686	Belongs to the peptidase S11 family
D0784_03450	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
D0784_03455	COG0772	Belongs to the SEDS family
D0784_03460	COG0768	penicillin binding
D0784_03470	COG0799	negative regulation of ribosome biogenesis
D0784_03475	COG1466	dna polymerase III delta subunit
D0784_03480	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
D0784_03490	COG2888	peptidyl-tyrosine sulfation
D0784_03495	COG0815	Transfers the fatty acyl group on membrane lipoproteins
D0784_03500	COG4535	Mg2 and Co2 transporter CorC
D0784_03510	COG1702	phosphate starvation-inducible protein PhoH
D0784_03525	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0784_03650	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
D0784_03675	COG2890	protein-(glutamine-N5) methyltransferase activity
D0784_03680	COG3094	Invasion gene expression up-regulator, SirB
D0784_03685	COG2912	Transglutaminase-like superfamily
D0784_03695	COG0737	Belongs to the 5'-nucleotidase family
D0784_03700	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
D0784_03705	COG1187	pseudouridine synthase activity
D0784_03710	COG2840	Smr protein MutS2
D0784_03750	COG2608	mercury ion transmembrane transporter activity
D0784_03750	COG2217	Heavy metal translocating P-type atpase
D0784_03765	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
D0784_03825	COG0835	chemotaxis
D0784_03825	COG0784	Response regulator, receiver
D0784_03830	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
D0784_03835	COG1815	bacterial-type flagellum-dependent cell motility
D0784_03840	COG1558	bacterial-type flagellum-dependent cell motility
D0784_03845	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
D0784_03850	COG1749	Flagellar hook protein flgE
D0784_03855	COG4787	bacterial-type flagellum-dependent cell motility
D0784_03860	COG4786	Flagellar basal body rod
D0784_03865	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
D0784_03870	COG1706	bacterial-type flagellum-dependent cell motility
D0784_03875	COG1705	Flagellar rod assembly protein muramidase FlgJ
D0784_03875	COG3951	Flagellar rod assembly protein muramidase FlgJ
D0784_03890	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D0784_03900	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D0784_03905	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D0784_03910	COG2190	(PTS) system
D0784_03915	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D0784_03920	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0784_03930	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
D0784_03935	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
D0784_03970	COG0330	HflC and HflK could
D0784_03975	COG2194	sulfuric ester hydrolase activity
D0784_03990	COG1192	Involved in chromosome partitioning
D0784_03995	COG1215	transferase activity, transferring glycosyl groups
D0784_04000	COG1215	transferase activity, transferring glycosyl groups
D0784_04005	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
D0784_04010	COG0457	Tetratricopeptide repeat
D0784_04010	COG3118	belongs to the thioredoxin family
D0784_04015	COG3118	belongs to the thioredoxin family
D0784_04025	COG0300	oxidoreductase activity
D0784_04030	COG1090	epimerase
D0784_04060	COG0622	Phosphoesterase
D0784_04080	COG3710	Transcriptional regulator
D0784_04095	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
D0784_04100	COG3104	oligopeptide transport
D0784_04110	COG0367	asparagine synthase
D0784_04115	COG4651	solute:proton antiporter activity
D0784_04115	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
D0784_04120	COG1940	carbohydrate kinase activity
D0784_04120	COG1846	Transcriptional regulator
D0784_04125	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
D0784_04135	COG2190	(PTS) system
D0784_04135	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0784_04135	COG1263	PTS System
D0784_04145	COG0735	belongs to the Fur family
D0784_04165	COG0596	Alpha beta hydrolase
D0784_04175	COG0033	Phosphoglucomutase
D0784_04185	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
D0784_04195	COG2009	succinate dehydrogenase
D0784_04200	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
D0784_04205	COG1053	succinate dehydrogenase
D0784_04215	COG0567	Dehydrogenase, E1 component
D0784_04220	COG0508	dehydrogenase complex catalyzes the overall conversion of
D0784_04235	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0784_04240	COG1121	(ABC) transporter
D0784_04245	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
D0784_04250	COG4977	sequence-specific DNA binding
D0784_04255	COG1918	ferrous iron import across plasma membrane
D0784_04290	COG3102	Protein conserved in bacteria
D0784_04305	COG0788	formyltetrahydrofolate deformylase activity
D0784_04315	COG1199	ATP-dependent helicase activity
D0784_04320	COG1214	PFAM Peptidase M22, glycoprotease
D0784_04330	COG3065	identical protein binding
D0784_04335	COG2267	carboxylic ester hydrolase activity
D0784_04340	COG0318	PFAM AMP-dependent synthetase and ligase
D0784_04345	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
D0784_04350	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
D0784_04355	COG2894	cell division
D0784_04370	COG2951	lytic endotransglycosylase activity
D0784_04380	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0784_04385	COG2852	Protein conserved in bacteria
D0784_04515	COG1733	regulation of RNA biosynthetic process
D0784_04520	COG0604	alcohol dehydrogenase
D0784_04525	COG1902	pentaerythritol trinitrate reductase activity
D0784_04530	COG1902	pentaerythritol trinitrate reductase activity
D0784_04535	COG0583	DNA-binding transcription factor activity
D0784_04540	COG2814	Major facilitator Superfamily
D0784_04550	COG1396	sequence-specific DNA binding
D0784_04555	COG3550	peptidyl-serine autophosphorylation
D0784_04565	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
D0784_04580	COG1028	Short-chain dehydrogenase reductase Sdr
D0784_04590	COG1169	isochorismate synthase
D0784_04595	COG1021	2,3-dihydroxybenzoate-AMP ligase
D0784_04600	COG3433	isochorismatase activity
D0784_04600	COG1535	isochorismatase
D0784_04605	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D0784_04605	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D0784_04620	COG4771	TonB-dependent receptor
D0784_04625	COG1253	flavin adenine dinucleotide binding
D0784_04630	COG0513	Belongs to the DEAD box helicase family
D0784_04635	COG0569	domain protein
D0784_04640	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D0784_04660	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
D0784_04665	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
D0784_04670	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
D0784_04705	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
D0784_04710	COG0776	regulation of translation
D0784_04715	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0784_04720	COG1555	photosystem II stabilization
D0784_04740	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
D0784_04745	COG0436	Aminotransferase
D0784_04750	COG1169	isochorismate synthase
D0784_04760	COG0596	Alpha beta hydrolase
D0784_04765	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
D0784_04770	COG1441	menaquinone biosynthetic process
D0784_04780	COG2190	(PTS) system
D0784_04780	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0784_04780	COG1263	PTS System
D0784_04785	COG0583	DNA-binding transcription factor activity
D0784_04795	COG2855	membrane
D0784_04855	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0784_04880	COG1522	sequence-specific DNA binding
D0784_04885	COG1946	Acyl-CoA thioesterase
D0784_04890	COG3126	Type III secretion system lipoprotein chaperone (YscW)
D0784_04905	COG3706	GGDEF domain
D0784_04915	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0784_04920	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
D0784_04925	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
D0784_04930	COG0516	GMP reductase activity
D0784_04930	COG0517	IMP dehydrogenase activity
D0784_04940	COG2217	Heavy metal translocating P-type atpase
D0784_04960	COG0537	adenosine 5'-monophosphoramidase activity
D0784_04990	COG1252	NADH dehydrogenase
D0784_05005	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
D0784_05015	COG4591	ABC-type transport system involved in lipoprotein release permease component
D0784_05020	COG1136	(ABC) transporter
D0784_05025	COG4591	ABC-type transport system involved in lipoprotein release permease component
D0784_05035	COG2333	competence protein COMEC
D0784_05035	COG0658	competence protein
D0784_05040	COG1132	(ABC) transporter
D0784_05060	COG2719	SpoVR family
D0784_05065	COG2718	Belongs to the UPF0229 family
D0784_05070	COG2766	serine protein kinase
D0784_05090	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0784_05100	COG1882	Formate acetyltransferase
D0784_05125	COG4215	(ABC) transporter
D0784_05135	COG0708	Exodeoxyribonuclease III
D0784_05145	COG3923	Primosomal replication protein n
D0784_05150	COG0730	response to heat
D0784_05155	COG1199	ATP-dependent helicase activity
D0784_05165	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
D0784_05170	COG1187	pseudouridine synthase activity
D0784_05180	COG1278	Cold shock
D0784_05190	COG0542	response to heat
D0784_05195	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
D0784_05225	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D0784_05230	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
D0784_05235	COG0297	glycogen (starch) synthase activity
D0784_05255	COG3070	regulator of competence-specific genes
D0784_05270	COG0745	RESPONSE REGULATOR receiver
D0784_05275	COG3385	transposase activity
D0784_05280	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D0784_05285	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
D0784_05295	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
D0784_05300	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
D0784_05315	COG0318	PFAM AMP-dependent synthetase and ligase
D0784_05340	COG0189	ligase activity
D0784_05340	COG4067	protein conserved in archaea
D0784_05360	COG1801	Protein of unknown function DUF72
D0784_05375	COG0840	transmembrane signaling receptor activity
D0784_05380	COG0632	four-way junction helicase activity
D0784_05390	COG1271	oxidase subunit
D0784_05395	COG1294	oxidase, subunit
D0784_05400	COG4890	Cyd operon protein YbgT
D0784_05410	COG0824	Thioesterase
D0784_05415	COG0811	peptide transport
D0784_05430	COG0823	Involved in the tonB-independent uptake of proteins
D0784_05435	COG2885	chlorophyll binding
D0784_05440	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
D0784_05455	COG3766	membrane
D0784_05465	COG0754	glutathionylspermidine amidase activity
D0784_05475	COG2205	protein histidine kinase activity
D0784_05475	COG0784	Response regulator, receiver
D0784_05505	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
D0784_05520	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
D0784_05610	COG4669	(LipO)protein
D0784_05640	COG3177	Filamentation induced by cAMP protein fic
D0784_05655	COG3385	transposase activity
D0784_05660	COG4792	protein secretion
D0784_05665	COG4791	protein targeting
D0784_05670	COG4794	Type iii secretion
D0784_05675	COG4790	Type iii secretion
D0784_05680	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D0784_05745	COG0457	Tetratricopeptide repeat
D0784_05765	COG0789	Transcriptional regulator
D0784_05770	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
D0784_05775	COG3385	transposase activity
D0784_05790	COG1263	PTS System
D0784_05790	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0784_05795	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0784_05800	COG1621	beta-fructofuranosidase activity
D0784_05805	COG2824	Alkylphosphonate utilization operon protein PhnA
D0784_05820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0784_05825	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0784_05835	COG2186	Transcriptional regulator
D0784_05845	COG1288	antiporter activity
D0784_05860	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
D0784_05880	COG3568	Endonuclease Exonuclease Phosphatase
D0784_05905	COG4934	collagen metabolic process
D0784_05910	COG0402	S-adenosylhomocysteine deaminase activity
D0784_05935	COG0583	DNA-binding transcription factor activity
D0784_05945	COG0686	Belongs to the AlaDH PNT family
D0784_05955	COG1674	ftsk spoiiie
D0784_05965	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
D0784_05985	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D0784_05990	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
D0784_06005	COG2226	methyltransferase
D0784_06030	COG0300	oxidoreductase activity
D0784_06045	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
D0784_06065	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
D0784_06075	COG0482	sulfurtransferase activity
D0784_06085	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0784_06095	COG1757	Na H antiporter
D0784_06110	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
D0784_06120	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
D0784_06120	COG0131	Imidazoleglycerol-phosphate dehydratase
D0784_06125	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
D0784_06130	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
D0784_06135	COG0107	imidazoleglycerol-phosphate synthase activity
D0784_06140	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
D0784_06140	COG0140	phosphoribosyl-ATP diphosphatase activity
D0784_06145	COG3012	SEC-C Motif Domain Protein
D0784_06150	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
D0784_06155	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
D0784_06160	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D0784_06165	COG0215	cysteine-tRNA ligase activity
D0784_06170	COG1435	thymidine kinase activity
D0784_06175	COG1434	Gram-negative-bacterium-type cell wall biogenesis
D0784_06200	COG2116	formate transmembrane transporter activity
D0784_06205	COG0390	transport system, permease component
D0784_06210	COG4459	periplasmic nitrate reductase
D0784_06215	COG3005	denitrification pathway
D0784_06235	COG1227	inorganic diphosphatase activity
D0784_06245	COG4172	Belongs to the ABC transporter superfamily
D0784_06255	COG4171	peptide transport system, permease
D0784_06260	COG4168	peptide transport system, permease
D0784_06270	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
D0784_06275	COG1842	Phage shock protein A
D0784_06285	COG1983	PspC domain protein
D0784_06305	COG2818	Glycosylase
D0784_06315	COG0626	cystathionine gamma-synthase activity
D0784_06325	COG0733	neurotransmitter:sodium symporter activity
D0784_06335	COG0564	pseudouridine synthase activity
D0784_06345	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0784_06350	COG1151	hydroxylamine reductase activity
D0784_06355	COG3604	Transcriptional regulator
D0784_06360	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
D0784_06365	COG4136	ATPase activity
D0784_06370	COG4135	transport system, permease component
D0784_06375	COG4134	Bacterial extracellular solute-binding protein
D0784_06380	COG0398	Pfam SNARE associated Golgi protein
D0784_06390	COG0493	'glutamate synthase
D0784_06415	COG0659	secondary active sulfate transmembrane transporter activity
D0784_06425	COG3313	Fe-S protein
D0784_06435	COG0737	Belongs to the 5'-nucleotidase family
D0784_06470	COG2205	protein histidine kinase activity
D0784_06475	COG0745	RESPONSE REGULATOR receiver
D0784_06485	COG3706	GGDEF domain
D0784_06490	COG1061	Type III restriction enzyme res subunit
D0784_06495	COG1187	pseudouridine synthase activity
D0784_06500	COG2814	Major facilitator Superfamily
D0784_06510	COG4667	esterase of the alpha-beta hydrolase superfamily
D0784_06515	COG0702	epimerase
D0784_06520	COG0534	Mate efflux family protein
D0784_06525	COG4181	ATPase activity
D0784_06555	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
D0784_06565	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D0784_06575	COG1737	Transcriptional regulator
D0784_06580	COG0076	glutamate decarboxylase activity
D0784_06590	COG2431	L-lysine efflux transmembrane transporter activity
D0784_06605	COG3070	regulator of competence-specific genes
D0784_06620	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0784_06620	COG4191	Histidine kinase
D0784_06630	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
D0784_06645	COG5001	Diguanylate cyclase
D0784_06675	COG2200	EAL domain
D0784_06680	COG0583	DNA-binding transcription factor activity
D0784_06685	COG2610	gluconate transmembrane transporter activity
D0784_06695	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
D0784_06700	COG4988	ABC transporter
D0784_06705	COG0492	ferredoxin-NADP+ reductase activity
D0784_06725	COG3706	GGDEF domain
D0784_06730	COG0471	metal ion transport
D0784_06735	COG2949	membrane
D0784_06745	COG1643	Atp-dependent helicase
D0784_06805	COG0247	lactate metabolic process
D0784_06805	COG0277	FAD linked oxidase domain protein
D0784_06850	COG2986	histidine ammonia-lyase
D0784_06860	COG0010	Belongs to the arginase family
D0784_06870	COG2188	Transcriptional regulator
D0784_06910	COG0251	oxidation-reduction process
D0784_06950	COG3706	GGDEF domain
D0784_06960	COG0072	phenylalanine-tRNA ligase activity
D0784_06960	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D0784_06965	COG1535	isochorismatase
D0784_06965	COG3433	isochorismatase activity
D0784_06985	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D0784_06995	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
D0784_07000	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
D0784_07005	COG4774	siderophore transport
D0784_07010	COG4607	ABC-type enterochelin transport system periplasmic component
D0784_07015	COG4605	iron ion homeostasis
D0784_07020	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0784_07070	COG1346	cytolysis
D0784_07080	COG2925	Exonuclease
D0784_07095	COG0702	epimerase
D0784_07100	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
D0784_07110	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
D0784_07135	COG4139	cobalamin transport
D0784_07165	COG0583	DNA-binding transcription factor activity
D0784_07200	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
D0784_07205	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
D0784_07210	COG3475	LICD family
D0784_07215	COG1451	nucleotide metabolic process
D0784_07225	COG3706	GGDEF domain
D0784_07225	COG0745	RESPONSE REGULATOR receiver
D0784_07240	COG0813	purine-nucleoside phosphorylase activity
D0784_07265	COG2195	Cleaves the N-terminal amino acid of tripeptides
D0784_07280	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
D0784_07290	COG0625	glutathione transferase activity
D0784_07315	COG0786	glutamate:sodium symporter activity
D0784_07330	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0784_07365	COG0519	Catalyzes the synthesis of GMP from XMP
D0784_07370	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
D0784_07380	COG0668	transmembrane transport
D0784_07385	COG3247	response to pH
D0784_07405	COG1846	Transcriptional regulator
D0784_07430	COG0110	maltose O-acetyltransferase activity
D0784_07450	COG3437	response regulator, receiver
D0784_07450	COG2205	protein histidine kinase activity
D0784_07450	COG4999	Histidine kinase
D0784_07450	COG3850	Histidine kinase
D0784_07455	COG3300	MHYT domain
D0784_07455	COG5001	Diguanylate cyclase
D0784_07480	COG3064	Membrane
D0784_07490	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
D0784_07495	COG1215	transferase activity, transferring glycosyl groups
D0784_07500	COG0438	transferase activity, transferring glycosyl groups
D0784_07530	COG0438	transferase activity, transferring glycosyl groups
D0784_07535	COG0438	transferase activity, transferring glycosyl groups
D0784_07540	COG2204	response regulator
D0784_07560	COG2885	chlorophyll binding
D0784_07570	COG1793	dna ligase
D0784_07580	COG0534	Mate efflux family protein
D0784_07585	COG0307	riboflavin synthase, alpha
D0784_07600	COG2201	protein-glutamate methylesterase activity
D0784_07605	COG3706	GGDEF domain
D0784_07615	COG0791	NLP P60 protein
D0784_07620	COG0840	transmembrane signaling receptor activity
D0784_07625	COG0494	nUDIX hydrolase
D0784_07670	COG1940	carbohydrate kinase activity
D0784_07680	COG0303	'Molybdopterin
D0784_07690	COG3842	ATPase activity
D0784_07695	COG4662	Binding-protein-dependent transport system inner membrane component
D0784_07705	COG2204	response regulator
D0784_07710	COG4191	Histidine kinase
D0784_07730	COG0488	(ABC) transporter
D0784_07745	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
D0784_07765	COG3381	protein complex oligomerization
D0784_07775	COG0243	molybdopterin cofactor binding
D0784_07775	COG3383	formate dehydrogenase (NAD+) activity
D0784_07780	COG0437	4 iron, 4 sulfur cluster binding
D0784_07800	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
D0784_07805	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D0784_07810	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
D0784_07815	COG1177	transmembrane transport
D0784_07820	COG1176	ABC-type spermidine putrescine transport system, permease component I
D0784_07825	COG3842	ATPase activity
D0784_07850	COG0589	response to stress
D0784_07855	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D0784_07870	COG2217	Heavy metal translocating P-type atpase
D0784_07880	COG2010	Cytochrome c
D0784_07895	COG3278	Belongs to the heme-copper respiratory oxidase family
D0784_07910	COG2205	protein histidine kinase activity
D0784_07910	COG0784	Response regulator, receiver
D0784_07915	COG2801	Transposase and inactivated derivatives
D0784_07945	COG1067	ATP-dependent peptidase activity
D0784_07990	COG2902	Dehydrogenase
D0784_08000	COG0308	aminopeptidase N
D0784_08010	COG0793	Belongs to the peptidase S41A family
D0784_08015	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
D0784_08020	COG1956	GAF domain-containing protein
D0784_08025	COG1132	(ABC) transporter
D0784_08030	COG2995	paraquat-inducible protein a
D0784_08035	COG3008	intermembrane lipid transfer
D0784_08060	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0784_08080	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0784_08085	COG4597	amino acid ABC transporter
D0784_08090	COG0765	amino acid transport
D0784_08095	COG1126	abc transporter atp-binding protein
D0784_08100	COG0670	Belongs to the BI1 family
D0784_08110	COG2920	part of a sulfur-relay system
D0784_08115	COG1254	Belongs to the acylphosphatase family
D0784_08120	COG0840	transmembrane signaling receptor activity
D0784_08170	COG3706	GGDEF domain
D0784_08180	COG0602	queuosine metabolic process
D0784_08185	COG0561	phosphatase activity
D0784_08205	COG3119	arylsulfatase activity
D0784_08220	COG2828	Protein conserved in bacteria
D0784_08230	COG0372	Belongs to the citrate synthase family
D0784_08235	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
D0784_08250	COG3501	Rhs element vgr protein
D0784_08345	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
D0784_08350	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
D0784_08380	COG0730	response to heat
D0784_08390	COG1012	belongs to the aldehyde dehydrogenase family
D0784_08395	COG3284	Transcriptional regulator
D0784_08425	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
D0784_08430	COG0363	glucosamine-6-phosphate deaminase activity
D0784_08435	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
D0784_08440	COG4565	transcriptional regulatory protein
D0784_08445	COG3290	protein histidine kinase activity
D0784_08460	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0784_08500	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
D0784_08505	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
D0784_08550	COG1404	Belongs to the peptidase S8 family
D0784_08555	COG1858	cytochrome C peroxidase
D0784_08565	COG0527	aspartate kinase activity
D0784_08570	COG0662	Cupin 2, conserved barrel domain protein
D0784_08575	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
D0784_08580	COG0456	acetyltransferase
D0784_08585	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0784_08595	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
D0784_08600	COG0534	Mate efflux family protein
D0784_08605	COG0215	cysteine-tRNA ligase activity
D0784_08610	COG1368	sulfuric ester hydrolase activity
D0784_08635	COG1115	amino acid carrier protein
D0784_08670	COG1280	lysine exporter protein (LysE YggA)
D0784_08675	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
D0784_08695	COG1560	Kdo2-lipid A biosynthetic process
D0784_08700	COG1280	lysine exporter protein (LysE YggA)
D0784_08705	COG0531	amino acid
D0784_08735	COG3063	Type IV pilus biogenesis stability protein PilW
D0784_08760	COG1643	Atp-dependent helicase
D0784_08765	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
D0784_08780	COG3302	dmso reductase anchor subunit
D0784_08785	COG0437	4 iron, 4 sulfur cluster binding
D0784_08790	COG0243	molybdopterin cofactor binding
D0784_08805	COG0395	ABC-type sugar transport system, permease component
D0784_08815	COG1653	transport
D0784_08825	COG3459	Glycosyltransferase 36 associated
D0784_08830	COG3842	ATPase activity
D0784_08850	COG3227	Zinc metalloprotease (Elastase)
D0784_08880	COG3706	GGDEF domain
D0784_08890	COG0443	Heat shock 70 kDa protein
D0784_08895	COG0443	Heat shock 70 kDa protein
D0784_08920	COG0583	DNA-binding transcription factor activity
D0784_08930	COG1132	(ABC) transporter
D0784_08935	COG1132	(ABC) transporter
D0784_08955	COG0814	amino acid
D0784_08960	COG1454	alcohol dehydrogenase
D0784_08965	COG4221	oxidoreductase activity
D0784_08970	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
D0784_08980	COG0861	Integral membrane protein TerC family
D0784_08990	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0784_08995	COG1328	CTP reductase activity
D0784_09000	COG1280	lysine exporter protein (LysE YggA)
D0784_09020	COG4191	Histidine kinase
D0784_09020	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0784_09025	COG0471	metal ion transport
D0784_09030	COG0456	acetyltransferase
D0784_09060	COG3340	Belongs to the peptidase S51 family
D0784_09075	COG4221	oxidoreductase activity
D0784_09165	COG2801	Transposase and inactivated derivatives
D0784_09225	COG2026	Addiction module toxin, RelE StbE family
D0784_09300	COG2801	Transposase and inactivated derivatives
D0784_09350	COG0519	Catalyzes the synthesis of GMP from XMP
D0784_09380	COG2026	Addiction module toxin, RelE StbE family
D0784_09390	COG2944	sequence-specific DNA binding
D0784_09395	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
D0784_09460	COG2801	Transposase and inactivated derivatives
D0784_09680	COG2801	Transposase and inactivated derivatives
D0784_09800	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0784_09815	COG3106	COG3106 Predicted ATPase
D0784_09830	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D0784_09835	COG2205	protein histidine kinase activity
D0784_09835	COG0784	Response regulator, receiver
D0784_09850	COG0814	amino acid
D0784_09855	COG1760	l-serine dehydratase
D0784_09870	COG2197	response regulator
D0784_09875	COG0720	synthase
D0784_09885	COG0017	Asparaginyl-tRNA synthetase
D0784_09900	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0784_09920	COG1448	Aminotransferase
D0784_09940	COG0840	transmembrane signaling receptor activity
D0784_09945	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0784_09950	COG1846	Transcriptional regulator
D0784_09975	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
D0784_09990	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
D0784_09995	COG3108	Peptidase M15
D0784_10000	COG2989	Protein conserved in bacteria
D0784_10035	COG4235	cytochrome complex assembly
D0784_10035	COG3088	subunit of a heme lyase
D0784_10045	COG1138	Cytochrome C-type biogenesis protein
D0784_10050	COG3301	Polysulphide reductase, NrfD
D0784_10055	COG0437	4 iron, 4 sulfur cluster binding
D0784_10065	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
D0784_10085	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
D0784_10095	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D0784_10100	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
D0784_10110	COG1546	Belongs to the CinA family
D0784_10110	COG1058	Belongs to the CinA family
D0784_10125	COG1943	Transposase
D0784_10130	COG0019	diaminopimelate decarboxylase activity
D0784_10170	COG0322	excinuclease ABC activity
D0784_10175	COG2197	response regulator
D0784_10180	COG0417	DNA replication proofreading
D0784_10200	COG1187	pseudouridine synthase activity
D0784_10210	COG0009	L-threonylcarbamoyladenylate synthase
D0784_10215	COG0613	PHP domain protein
D0784_10225	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
D0784_10230	COG0512	Glutamine amidotransferase of anthranilate synthase
D0784_10240	COG0134	indole-3-glycerol-phosphate synthase activity
D0784_10240	COG0135	phosphoribosylanthranilate isomerase activity
D0784_10250	COG0159	tryptophan synthase activity
D0784_10255	COG1301	dicarboxylic acid transport
D0784_10280	COG1607	acyl-coa hydrolase
D0784_10285	COG2350	Protein conserved in bacteria
D0784_10300	COG0583	DNA-binding transcription factor activity
D0784_10315	COG5001	Diguanylate cyclase
D0784_10315	COG1716	ATPase activity
D0784_10320	COG1032	radical SAM domain protein
D0784_10345	COG0446	pyridine nucleotide-disulphide oxidoreductase
D0784_10360	COG2964	Protein conserved in bacteria
D0784_10365	COG2175	clavaminate synthase activity
D0784_10370	COG0840	transmembrane signaling receptor activity
D0784_10380	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
D0784_10385	COG0463	Glycosyl transferase, family 2
D0784_10390	COG0745	RESPONSE REGULATOR receiver
D0784_10395	COG3850	Histidine kinase
D0784_10395	COG5002	protein histidine kinase activity
D0784_10450	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
D0784_10485	COG2176	DNA-directed DNA polymerase activity
D0784_10500	COG0577	efflux transmembrane transporter activity
D0784_10500	COG1136	(ABC) transporter
D0784_10505	COG0577	efflux transmembrane transporter activity
D0784_10505	COG1136	(ABC) transporter
D0784_10520	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0784_10555	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
D0784_10565	COG3118	belongs to the thioredoxin family
D0784_10570	COG4232	protein-disulfide reductase activity
D0784_10585	COG2211	Major facilitator Superfamily
D0784_10600	COG4580	involved in the transport of maltose and maltodextrins
D0784_10610	COG3250	beta-galactosidase activity
D0784_10615	COG1609	Transcriptional regulator
D0784_10620	COG2995	paraquat-inducible protein a
D0784_10625	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D0784_10625	COG3008	intermembrane lipid transfer
D0784_10630	COG3009	Protein conserved in bacteria
D0784_10650	COG4166	transmembrane transport
D0784_10660	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
D0784_10665	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
D0784_10675	COG0539	negative regulation of cytoplasmic translation
D0784_10685	COG0616	signal peptide processing
D0784_10690	COG1028	Short-chain dehydrogenase reductase Sdr
D0784_10710	COG0835	chemotaxis
D0784_10710	COG0784	Response regulator, receiver
D0784_10715	COG1940	carbohydrate kinase activity
D0784_10730	COG3710	Transcriptional regulator
D0784_10740	COG2272	Belongs to the type-B carboxylesterase lipase family
D0784_10765	COG4667	esterase of the alpha-beta hydrolase superfamily
D0784_10780	COG0733	neurotransmitter:sodium symporter activity
D0784_10795	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0784_10795	COG1263	PTS System
D0784_10800	COG0084	hydrolase, TatD family'
D0784_10815	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
D0784_10845	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D0784_10860	COG1399	metal-binding, possibly nucleic acid-binding protein
D0784_10865	COG0424	maF-like protein
D0784_10870	COG0564	pseudouridine synthase activity
D0784_10875	COG1530	ribonuclease E activity
D0784_10885	COG0659	secondary active sulfate transmembrane transporter activity
D0784_10890	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
D0784_10895	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
D0784_10925	COG2186	Transcriptional regulator
D0784_10935	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
D0784_10940	COG0653	protein targeting
D0784_10945	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D0784_10950	COG0745	RESPONSE REGULATOR receiver
D0784_10950	COG3706	GGDEF domain
D0784_10955	COG0366	Alpha amylase catalytic
D0784_10960	COG1122	ATPase activity
D0784_10965	COG4120	Belongs to the binding-protein-dependent transport system permease family
D0784_10985	COG0857	belongs to the CobB CobQ family
D0784_10985	COG0280	phosphate acetyltransferase
D0784_10990	COG3174	membrane
D0784_10995	COG0435	Glutathione S-transferase
D0784_11005	COG0444	Belongs to the ABC transporter superfamily
D0784_11010	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0784_11015	COG0601	transmembrane transport
D0784_11025	COG0314	molybdopterin synthase activity
D0784_11030	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
D0784_11040	COG0521	Mo-molybdopterin cofactor biosynthetic process
D0784_11045	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
D0784_11050	COG0391	Required for morphogenesis under gluconeogenic growth conditions
D0784_11065	COG0556	nucleotide-excision repair
D0784_11100	COG0745	RESPONSE REGULATOR receiver
D0784_11105	COG1882	Formate acetyltransferase
D0784_11110	COG4657	Part of a membrane complex involved in electron transport
D0784_11120	COG4656	Part of a membrane complex involved in electron transport
D0784_11125	COG4658	electron transport chain
D0784_11130	COG4659	FMN binding
D0784_11135	COG4660	Part of a membrane complex involved in electron transport
D0784_11140	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
D0784_11145	COG0346	lactoylglutathione lyase activity
D0784_11155	COG2885	chlorophyll binding
D0784_11165	COG2056	Na+-H+ antiporter family
D0784_11215	COG2885	chlorophyll binding
D0784_11215	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D0784_11225	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D0784_11225	COG2885	chlorophyll binding
D0784_11285	COG4974	Belongs to the 'phage' integrase family
D0784_11290	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
D0784_11310	COG1454	alcohol dehydrogenase
D0784_11310	COG1012	belongs to the aldehyde dehydrogenase family
D0784_11315	COG2095	MarC family integral membrane protein
D0784_11320	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D0784_11335	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D0784_11340	COG1757	Na H antiporter
D0784_11365	COG3083	sulfuric ester hydrolase activity
D0784_11380	COG4269	membrane
D0784_11390	COG0123	including yeast histone deacetylase and acetoin utilization protein
D0784_11405	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
D0784_11410	COG0778	Nitroreductase
D0784_11415	COG0446	pyridine nucleotide-disulphide oxidoreductase
D0784_11415	COG1902	pentaerythritol trinitrate reductase activity
D0784_11420	COG0616	signal peptide processing
D0784_11425	COG0252	asparaginase activity
D0784_11430	COG3139	Protein of unknown function (DUF1315)
D0784_11440	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D0784_11445	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D0784_11460	COG1957	nucleoside hydrolase
D0784_11465	COG2226	methyltransferase
D0784_11485	COG1785	Belongs to the alkaline phosphatase family
D0784_11495	COG0346	lactoylglutathione lyase activity
D0784_11505	COG0668	transmembrane transport
D0784_11510	COG0076	glutamate decarboxylase activity
D0784_11515	COG2985	domain, Protein
D0784_11520	COG2261	transglycosylase associated protein
D0784_11525	COG2983	Belongs to the UPF0260 family
D0784_11535	COG2964	Protein conserved in bacteria
D0784_11545	COG0251	oxidation-reduction process
D0784_11550	COG0814	amino acid
D0784_11555	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
D0784_11560	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
D0784_11570	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
D0784_11580	COG2832	Protein of unknown function (DUF454)
D0784_11590	COG0745	RESPONSE REGULATOR receiver
D0784_11595	COG0583	DNA-binding transcription factor activity
D0784_11600	COG3385	transposase activity
D0784_11605	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
D0784_11610	COG1286	toxin biosynthetic process
D0784_11615	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
D0784_11620	COG0285	dihydrofolate synthase activity
D0784_11645	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
D0784_11650	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D0784_11660	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
D0784_11685	COG3101	peptidyl-lysine hydroxylation
D0784_11690	COG2860	membrane
D0784_11700	COG2890	protein-(glutamine-N5) methyltransferase activity
D0784_11710	COG2062	phosphohistidine phosphatase, SixA
D0784_11730	COG0183	Belongs to the thiolase family
D0784_11755	COG2067	long-chain fatty acid transport protein
D0784_11760	COG2853	Lipoprotein
D0784_11765	COG3088	subunit of a heme lyase
D0784_11765	COG4235	cytochrome complex assembly
D0784_11775	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
D0784_11780	COG1138	Cytochrome C-type biogenesis protein
D0784_11795	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D0784_11800	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
D0784_11805	COG4133	protoheme IX ABC transporter activity
D0784_11815	COG0835	chemotaxis
D0784_11825	COG1192	Involved in chromosome partitioning
D0784_11830	COG2201	protein-glutamate methylesterase activity
D0784_11835	COG0643	Histidine kinase
D0784_11835	COG2198	Histidine kinase
D0784_11840	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
D0784_11855	COG0455	bacterial-type flagellum organization
D0784_11875	COG1684	flagellar biosynthetic protein fliR
D0784_11880	COG1987	bacterial-type flagellum assembly
D0784_11935	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D0784_11945	COG1677	Flagellar hook-basal body complex protein FliE
D0784_11950	COG2204	response regulator
D0784_11955	COG4191	Histidine kinase
D0784_11965	COG1516	flagellar protein fliS
D0784_11975	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
D0784_11980	COG1334	flagellar protein FlaG
D0784_11985	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D0784_11990	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D0784_12000	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D0784_12010	COG2211	Major facilitator Superfamily
D0784_12015	COG1486	melibiose metabolic process
D0784_12020	COG2169	Transcriptional regulator
D0784_12025	COG2837	iron assimilation
D0784_12050	COG1393	Belongs to the ArsC family
D0784_12075	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
D0784_12080	COG2716	regulation of RNA biosynthetic process
D0784_12085	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
D0784_12100	COG4783	chaperone-mediated protein folding
D0784_12105	COG1393	Belongs to the ArsC family
D0784_12125	COG2233	PERMEase
D0784_12130	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
D0784_12135	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
D0784_12140	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
D0784_12145	COG0121	glutamine amidotransferase
D0784_12150	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
D0784_12155	COG1960	acyl-CoA dehydrogenase activity
D0784_12185	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
D0784_12195	COG2226	methyltransferase
D0784_12205	COG1388	LysM domain
D0784_12205	COG0741	lytic transglycosylase activity
D0784_12220	COG0347	Belongs to the P(II) protein family
D0784_12240	COG0587	DNA-directed DNA polymerase activity
D0784_12265	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
D0784_12270	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
D0784_12280	COG0750	zinc metalloprotease
D0784_12290	COG0575	Belongs to the CDS family
D0784_12295	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
D0784_12320	COG0024	Methionine aminopeptidase
D0784_12335	COG0564	pseudouridine synthase activity
D0784_12340	COG3098	single-species biofilm formation
D0784_12375	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
D0784_12390	COG1720	tRNA m6t6A37 methyltransferase activity
D0784_12415	COG0733	neurotransmitter:sodium symporter activity
D0784_12430	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D0784_12435	COG0514	ATP-dependent DNA helicase (RecQ)
D0784_12440	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
D0784_12445	COG3706	GGDEF domain
D0784_12445	COG0745	RESPONSE REGULATOR receiver
D0784_12455	COG1477	protein flavinylation
D0784_12490	COG0271	Belongs to the BolA IbaG family
D0784_12520	COG1595	DNA-templated transcription, initiation
D0784_12545	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
D0784_12550	COG0693	protein deglycase activity
D0784_12555	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
D0784_12560	COG2166	iron-sulfur cluster assembly
D0784_12565	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
D0784_12570	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
D0784_12585	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
D0784_12585	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
D0784_12605	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
D0784_12610	COG1074	ATP-dependent DNA helicase activity
D0784_12615	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
D0784_12635	COG3141	response to X-ray
D0784_12650	COG2171	N-acyltransferase activity
D0784_12665	COG0584	glycerophosphoryl diester phosphodiesterase
D0784_12670	COG2271	Major facilitator Superfamily
D0784_12680	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
D0784_12690	COG1349	DNA-binding transcription factor activity
D0784_12695	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
D0784_12715	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
D0784_12725	COG1263	PTS System
D0784_12725	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0784_12730	COG1609	Transcriptional regulator
D0784_12735	COG2017	converts alpha-aldose to the beta-anomer
D0784_12745	COG1085	galactose-1-phosphate uridylyltransferase
D0784_12750	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D0784_12760	COG0768	penicillin binding
D0784_12765	COG1609	Transcriptional regulator
D0784_12770	COG3250	beta-galactosidase activity
D0784_12775	COG2731	YhcH YjgK YiaL family protein
D0784_12780	COG0531	amino acid
D0784_12785	COG0583	DNA-binding transcription factor activity
D0784_12845	COG4964	Belongs to the GSP D family
D0784_12870	COG2169	Transcriptional regulator
D0784_12875	COG1022	Amp-dependent synthetase and ligase
D0784_12905	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
D0784_12910	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
D0784_12920	COG0560	Phosphoserine phosphatase
D0784_12930	COG0813	purine-nucleoside phosphorylase activity
D0784_12940	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
D0784_12950	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0784_12955	COG0084	hydrolase, TatD family'
D0784_12965	COG3706	GGDEF domain
D0784_12985	COG3153	acetyltransferase
D0784_13010	COG0534	Mate efflux family protein
D0784_13030	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
D0784_13050	COG0195	Participates in both transcription termination and antitermination
D0784_13070	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D0784_13085	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
D0784_13090	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
D0784_13100	COG1534	Rna-binding protein
D0784_13105	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D0784_13110	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0784_13115	COG2027	D-alanyl-D-alanine carboxypeptidase
D0784_13125	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
D0784_13130	COG0739	heme binding
D0784_13135	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0784_13155	COG0628	permease
D0784_13170	COG0784	Response regulator, receiver
D0784_13170	COG2198	Histidine kinase
D0784_13170	COG2205	protein histidine kinase activity
D0784_13170	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0784_13175	COG0747	negative chemotaxis
D0784_13185	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0784_13190	COG0444	Belongs to the ABC transporter superfamily
D0784_13195	COG4608	Belongs to the ABC transporter superfamily
D0784_13205	COG2971	BadF BadG BcrA BcrD
D0784_13220	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D0784_13225	COG3842	ATPase activity
D0784_13235	COG1840	ABC-type Fe3 transport system, periplasmic component
D0784_13240	COG0004	ammonium transporteR
D0784_13255	COG1049	propionate catabolic process, 2-methylcitrate cycle
D0784_13260	COG1752	Esterase of the alpha-beta hydrolase superfamily
D0784_13265	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D0784_13270	COG1643	Atp-dependent helicase
D0784_13280	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
D0784_13285	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
D0784_13300	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
D0784_13315	COG1560	Kdo2-lipid A biosynthetic process
D0784_13320	COG0842	Transport permease protein
D0784_13325	COG1131	(ABC) transporter
D0784_13330	COG0659	secondary active sulfate transmembrane transporter activity
D0784_13335	COG0288	reversible hydration of carbon dioxide
D0784_13355	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D0784_13360	COG0508	dehydrogenase complex catalyzes the overall conversion of
D0784_13365	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
D0784_13370	COG2186	Transcriptional regulator
D0784_13395	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D0784_13400	COG1459	type II secretion system
D0784_13410	COG0237	dephospho-CoA kinase activity
D0784_13415	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
D0784_13420	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
D0784_13450	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
D0784_13455	COG4137	Cytochrome C assembly protein
D0784_13460	COG4536	flavin adenine dinucleotide binding
D0784_13480	COG0612	Peptidase, M16
D0784_13485	COG1238	metal cluster binding
D0784_13495	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
D0784_13500	COG0511	ligase activity, forming carbon-carbon bonds
D0784_13500	COG5016	pyruvate
D0784_13565	COG0527	aspartate kinase activity
D0784_13580	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
D0784_13585	COG1546	Belongs to the CinA family
D0784_13610	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
D0784_13635	COG3501	Rhs element vgr protein
D0784_13675	COG2003	Belongs to the UPF0758 family
D0784_13700	COG2826	transposase and inactivated derivatives, IS30 family
D0784_13725	COG3335	DDE superfamily endonuclease
D0784_13730	COG0582	viral genome integration into host DNA
D0784_13740	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
D0784_13770	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
D0784_13780	COG0148	phosphopyruvate hydratase activity
D0784_13790	COG3956	TIGRFAM MazG family protein
D0784_13795	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
D0784_13820	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
D0784_13825	COG1381	Involved in DNA repair and RecF pathway recombination
D0784_13830	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
D0784_13840	COG0681	Belongs to the peptidase S26 family
D0784_13850	COG3086	response to oxidative stress
D0784_13865	COG1595	DNA-templated transcription, initiation
D0784_13870	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
D0784_13880	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
D0784_13900	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0784_13905	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
D0784_13920	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
D0784_13930	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
D0784_13940	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
D0784_13945	COG2968	Membrane
D0784_13950	COG0583	DNA-binding transcription factor activity
D0784_13965	COG0668	transmembrane transport
D0784_13970	COG0191	fructose-bisphosphate aldolase activity
D0784_13990	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D0784_14010	COG2356	endonuclease I
D0784_14015	COG1385	rRNA (uridine-N3-)-methyltransferase activity
D0784_14020	COG0189	ligase activity
D0784_14025	COG1678	Uncharacterized ACR, COG1678
D0784_14030	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
D0784_14045	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
D0784_14050	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
D0784_14055	COG0762	integral membrane protein
D0784_14070	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
D0784_14075	COG0635	Involved in the biosynthesis of porphyrin-containing compound
D0784_14175	COG1012	belongs to the aldehyde dehydrogenase family
D0784_14225	COG3437	response regulator, receiver
D0784_14240	COG1486	melibiose metabolic process
D0784_14245	COG1447	Phosphotransferase system cellobiose-specific component IIA
D0784_14255	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0784_14260	COG0726	polysaccharide deacetylase
D0784_14275	COG1028	Short-chain dehydrogenase reductase Sdr
D0784_14285	COG0795	lipopolysaccharide-transporting ATPase activity
D0784_14290	COG0795	lipopolysaccharide-transporting ATPase activity
D0784_14300	COG2927	DNA polymerase III (CHI subunit)
D0784_14305	COG0525	valine-tRNA ligase activity
D0784_14315	COG0456	acetyltransferase
D0784_14355	COG0251	oxidation-reduction process
D0784_14360	COG0204	Acyl-transferase
D0784_14370	COG5007	Belongs to the BolA IbaG family
D0784_14380	COG2854	intermembrane phospholipid transfer
D0784_14385	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
D0784_14390	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
D0784_14395	COG1127	ABC transporter
D0784_14405	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
D0784_14405	COG0517	IMP dehydrogenase activity
D0784_14415	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
D0784_14420	COG1137	ATPase activity
D0784_14430	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
D0784_14435	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0784_14445	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0784_14450	COG2239	Acts as a magnesium transporter
D0784_14455	COG0312	modulator of DNA gyrase
D0784_14465	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D0784_14470	COG0564	pseudouridine synthase activity
D0784_14485	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
D0784_14490	COG0312	modulator of DNA gyrase
D0784_14495	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
D0784_14500	COG3164	Protein of unknown function
D0784_14505	COG1530	ribonuclease E activity
D0784_14510	COG0424	maF-like protein
D0784_14515	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
D0784_14520	COG1792	Involved in formation and maintenance of cell shape
D0784_14525	COG1077	Cell shape determining protein MreB Mrl
D0784_14570	COG1459	type II secretion system
D0784_14575	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D0784_14585	COG3409	Peptidoglycan-binding domain 1 protein
D0784_14585	COG3267	Type II secretory pathway component ExeA
D0784_14610	COG2199	diguanylate cyclase activity
D0784_14610	COG2200	EAL domain
D0784_14615	COG0629	single-stranded DNA binding
D0784_14630	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
D0784_14640	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
D0784_14650	COG0527	aspartate kinase activity
D0784_14655	COG1410	methionine synthase
D0784_14655	COG0646	methionine synthase
D0784_14730	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
D0784_14750	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D0784_14755	COG0735	belongs to the Fur family
D0784_14770	COG0432	Pfam Uncharacterised protein family UPF0047
D0784_14780	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
D0784_14785	COG0305	Participates in initiation and elongation during chromosome replication
D0784_14805	COG2965	DNA replication, synthesis of RNA primer
D0784_14815	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
D0784_14820	COG0338	D12 class N6 adenine-specific DNA methyltransferase
D0784_14865	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
D0784_14875	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
D0784_14875	COG0678	peroxiredoxin activity
D0784_14880	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
D0784_14895	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
D0784_14895	COG0165	Argininosuccinate lyase
D0784_14910	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
D0784_14920	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
D0784_14930	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
D0784_14935	COG0460	homoserine dehydrogenase
D0784_14935	COG0527	aspartate kinase activity
D0784_14940	COG0626	cystathionine gamma-synthase activity
D0784_14950	COG0281	malic enzyme
D0784_14960	COG2906	2 iron, 2 sulfur cluster binding
D0784_14970	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
D0784_14985	COG2168	tRNA wobble position uridine thiolation
D0784_14990	COG2923	Belongs to the DsrF TusC family
D0784_14995	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
D0784_15000	COG2964	Protein conserved in bacteria
D0784_15005	COG0545	Peptidyl-prolyl cis-trans isomerase
D0784_15020	COG1446	asparaginase
D0784_15030	COG1047	Peptidyl-prolyl cis-trans
D0784_15045	COG2249	NAD(P)H dehydrogenase (quinone) activity
D0784_15055	COG0488	(ABC) transporter
D0784_15065	COG0429	hydrolase of the alpha beta-hydrolase fold
D0784_15075	COG3954	Phosphoribulokinase
D0784_15080	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
D0784_15100	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
D0784_15105	COG0512	Glutamine amidotransferase of anthranilate synthase
D0784_15120	COG0546	phosphoglycolate phosphatase activity
D0784_15125	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
D0784_15130	COG0557	exoribonuclease II activity
D0784_15140	COG1017	nitric oxide dioxygenase activity
D0784_15140	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0784_15145	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
D0784_15155	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
D0784_15160	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
D0784_15165	COG0330	HflC and HflK could
D0784_15170	COG0330	HflC and HflK could
D0784_15175	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
D0784_15190	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
D0784_15195	COG0860	N-Acetylmuramoyl-L-alanine amidase
D0784_15200	COG0802	atpase or kinase
D0784_15205	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
D0784_15280	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
D0784_15285	COG1162	GTPase activity
D0784_15295	COG0471	metal ion transport
D0784_15310	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
D0784_15315	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
D0784_15320	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
D0784_15330	COG1045	serine acetyltransferase
D0784_15335	COG4942	peptidase
D0784_15360	COG1053	succinate dehydrogenase
D0784_15365	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
D0784_15395	COG1509	lysine 2,3-aminomutase activity
D0784_15415	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
D0784_15420	COG0534	Mate efflux family protein
D0784_15440	COG0745	RESPONSE REGULATOR receiver
D0784_15445	COG2205	protein histidine kinase activity
D0784_15455	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
D0784_15460	COG3030	protein affecting phage T7 exclusion by the F plasmid
D0784_15465	COG1027	Aspartate ammonia-lyase
D0784_15470	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D0784_15475	COG4232	protein-disulfide reductase activity
D0784_15485	COG2095	MarC family integral membrane protein
D0784_15495	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
D0784_15515	COG2205	protein histidine kinase activity
D0784_15515	COG0784	Response regulator, receiver
D0784_15515	COG2198	Histidine kinase
D0784_15520	COG2814	Major facilitator Superfamily
D0784_15535	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D0784_15540	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
D0784_15545	COG0511	ligase activity, forming carbon-carbon bonds
D0784_15550	COG0439	Biotin carboxylase
D0784_15565	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
D0784_15570	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
D0784_15575	COG3706	GGDEF domain
D0784_15620	COG1982	Orn Lys Arg decarboxylase major
D0784_15625	COG0531	amino acid
D0784_15635	COG3710	Transcriptional regulator
D0784_15640	COG0789	Transcriptional regulator
D0784_15650	COG0151	Belongs to the GarS family
D0784_15665	COG1253	flavin adenine dinucleotide binding
D0784_15670	COG3068	Protein conserved in bacteria
D0784_15680	COG1573	uracil-dna glycosylase
D0784_15700	COG2816	NAD+ diphosphatase activity
D0784_15705	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
D0784_15725	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
D0784_15740	COG0250	Participates in transcription elongation, termination and antitermination
D0784_15745	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
D0784_15790	COG0812	UDP-N-acetylmuramate dehydrogenase activity
D0784_15800	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D0784_15905	COG0534	Mate efflux family protein
D0784_15925	COG2937	Belongs to the GPAT DAPAT family
D0784_15935	COG3161	chorismate lyase activity
D0784_15940	COG1580	Controls the rotational direction of flagella during chemotaxis
D0784_15945	COG0705	Rhomboid family
D0784_15965	COG2177	Part of the ABC transporter FtsEX involved in
D0784_15970	COG2884	Cell division ATP-binding protein ftsE
D0784_15975	COG0552	protein localization to endoplasmic reticulum
D0784_15980	COG0742	ribosomal rna small subunit methyltransferase
D0784_15990	COG2095	MarC family integral membrane protein
D0784_16045	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
D0784_16050	COG0640	Transcriptional regulator
D0784_16055	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
D0784_16060	COG1280	lysine exporter protein (LysE YggA)
D0784_16065	COG2267	carboxylic ester hydrolase activity
D0784_16070	COG0561	phosphatase activity
D0784_16090	COG2199	diguanylate cyclase activity
D0784_16090	COG2200	EAL domain
D0784_16090	COG3287	FIST C domain
D0784_16095	COG1011	Hydrolase
D0784_16115	COG0019	diaminopimelate decarboxylase activity
D0784_16130	COG3072	Adenylate cyclase
D0784_16140	COG1587	Uroporphyrinogen-III synthase
D0784_16145	COG2959	enzyme of heme biosynthesis
D0784_16150	COG3071	HemY protein
D0784_16195	COG0633	Ferredoxin
D0784_16200	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
D0784_16210	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
D0784_16215	COG3118	belongs to the thioredoxin family
D0784_16230	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
D0784_16245	COG0514	ATP-dependent DNA helicase (RecQ)
D0784_16250	COG2962	Rard protein
D0784_16270	COG1280	lysine exporter protein (LysE YggA)
D0784_16275	COG0405	Gamma-glutamyltransferase
D0784_16285	COG0210	DNA helicase
D0784_16295	COG3220	belongs to the UPF0276 family
D0784_16315	COG2814	Major facilitator Superfamily
D0784_16325	COG0006	proline dipeptidase activity
D0784_16325	COG0006	proline dipeptidase activity
D0784_16340	COG2104	thiamine diphosphate biosynthetic process
D0784_16345	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D0784_16365	COG2132	Multicopper oxidase
D0784_16410	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
D0784_16435	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
D0784_16440	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
D0784_16445	COG0551	DNA topoisomerase type I activity
D0784_16455	COG0758	DNA mediated transformation
D0784_16465	COG0242	peptide deformylase activity
D0784_16475	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
D0784_16475	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
D0784_16480	COG0569	domain protein
D0784_16485	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D0784_16495	COG1272	protein, Hemolysin III
D0784_16500	COG4326	sporulation control protein
D0784_16510	COG3084	Protein conserved in bacteria
D0784_16520	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
D0784_16525	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0784_16530	COG0204	Acyl-transferase
D0784_16540	COG2199	diguanylate cyclase activity
D0784_16630	COG3978	acetolactate synthase activity
D0784_16635	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
D0784_16640	COG0129	dihydroxy-acid dehydratase activity
D0784_16650	COG0583	DNA-binding transcription factor activity
D0784_16655	COG2814	Major facilitator Superfamily
D0784_16660	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0784_16665	COG0765	amino acid transport
D0784_16675	COG0355	proton-transporting ATP synthase activity, rotational mechanism
D0784_16685	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
D0784_16715	COG3312	ion transport
D0784_16720	COG1475	DNA binding
D0784_16725	COG1192	Involved in chromosome partitioning
D0784_16740	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
D0784_16755	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
D0784_16770	COG1126	abc transporter atp-binding protein
D0784_16810	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0784_16815	COG1263	PTS System
D0784_16815	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0784_16820	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
D0784_16835	COG4166	transmembrane transport
D0784_16975	COG1132	(ABC) transporter
D0784_17010	COG0800	Aldolase
D0784_17015	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0784_17020	COG1904	glucuronate isomerase
D0784_17025	COG0246	Mannitol dehydrogenase
D0784_17035	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
D0784_17045	COG2186	Transcriptional regulator
D0784_17050	COG1312	Catalyzes the dehydration of D-mannonate
D0784_17070	COG0513	Belongs to the DEAD box helicase family
D0784_17075	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
D0784_17080	COG1757	Na H antiporter
D0784_17085	COG1609	Transcriptional regulator
D0784_17090	COG2258	MOSC domain
D0784_17105	COG0544	peptidyl-prolyl cis-trans isomerase activity
D0784_17110	COG1522	sequence-specific DNA binding
D0784_17120	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
D0784_17140	COG1349	DNA-binding transcription factor activity
D0784_17145	COG2084	Dehydrogenase
D0784_17150	COG3395	kinase activity
D0784_17155	COG0235	Class ii aldolase
D0784_17160	COG3622	Belongs to the hyi family
D0784_17165	COG2610	gluconate transmembrane transporter activity
D0784_17210	COG3634	alkyl hydroperoxide reductase activity
D0784_17215	COG0450	alkyl hydroperoxide reductase
D0784_17220	COG1846	Transcriptional regulator
D0784_17225	COG1764	response to oxidative stress
D0784_17265	COG1136	(ABC) transporter
D0784_17270	COG1335	isochorismatase
D0784_17285	COG0463	Glycosyl transferase, family 2
D0784_17320	COG0840	transmembrane signaling receptor activity
D0784_17325	COG0612	Peptidase, M16
D0784_17350	COG2188	Transcriptional regulator
D0784_17360	COG2190	(PTS) system
D0784_17360	COG1263	PTS System
D0784_17360	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
D0784_17365	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0784_17370	COG0800	Aldolase
D0784_17385	COG0739	heme binding
D0784_17400	COG2814	Major facilitator Superfamily
D0784_17410	COG1609	Transcriptional regulator
D0784_17435	COG1760	l-serine dehydratase
D0784_17445	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
D0784_17470	COG2203	Gaf domain
D0784_17470	COG3706	GGDEF domain
D0784_17470	COG4251	negative regulation of phosphorylation
D0784_17470	COG5001	Diguanylate cyclase
D0784_17480	COG4580	involved in the transport of maltose and maltodextrins
D0784_17500	COG2356	endonuclease I
D0784_17520	COG1982	Orn Lys Arg decarboxylase major
D0784_17525	COG0531	amino acid
D0784_17545	COG3385	transposase activity
D0784_17550	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
D0784_17555	COG1162	GTPase activity
D0784_17570	COG1999	signal sequence binding
D0784_17595	COG0058	SHG alpha-glucan phosphorylase activity
D0784_17600	COG1640	4-alpha-glucanotransferase
D0784_17605	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
D0784_17610	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
D0784_17615	COG0366	Alpha amylase catalytic
D0784_17630	COG3366	ferrous iron transmembrane transporter activity
D0784_17635	COG0700	Nucleoside recognition
D0784_17640	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
D0784_17645	COG3339	Conserved Protein
D0784_17650	COG1301	dicarboxylic acid transport
D0784_17710	COG2095	MarC family integral membrane protein
D0784_17715	COG4667	esterase of the alpha-beta hydrolase superfamily
D0784_17725	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
D0784_17730	COG0415	Belongs to the DNA photolyase family
D0784_17755	COG1686	Belongs to the peptidase S11 family
D0784_17765	COG0583	DNA-binding transcription factor activity
D0784_17770	COG4628	conserved protein (DUF2132)
D0784_17780	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
D0784_17795	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
D0784_17800	COG0628	permease
D0784_17840	COG2988	succinylglutamate desuccinylase activity
D0784_17850	COG2814	Major facilitator Superfamily
D0784_17860	COG0454	-acetyltransferase
D0784_17870	COG0745	RESPONSE REGULATOR receiver
D0784_17875	COG2205	protein histidine kinase activity
D0784_17890	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
D0784_17895	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
D0784_17940	COG0251	oxidation-reduction process
D0784_17950	COG1294	oxidase, subunit
D0784_17955	COG1271	oxidase subunit
D0784_17970	COG3220	belongs to the UPF0276 family
D0784_17985	COG0384	phenazine biosynthesis protein PhzF
D0784_17990	COG0346	lactoylglutathione lyase activity
D0784_18005	COG0488	(ABC) transporter
D0784_18010	COG4628	conserved protein (DUF2132)
D0784_18025	COG0583	DNA-binding transcription factor activity
D0784_18040	COG3537	Alpha-1,2-mannosidase
D0784_18045	COG3537	Alpha-1,2-mannosidase
D0784_18055	COG3537	Alpha-1,2-mannosidase
D0784_18060	COG3537	Alpha-1,2-mannosidase
D0784_18065	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0784_18075	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D0784_18075	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D0784_18080	COG0346	lactoylglutathione lyase activity
D0784_18085	COG1349	DNA-binding transcription factor activity
D0784_18100	COG0753	catalase activity
D0784_18115	COG1335	isochorismatase
D0784_18150	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
D0784_18160	COG0583	DNA-binding transcription factor activity
D0784_18165	COG0589	response to stress
D0784_18170	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D0784_18185	COG4175	Glycine betaine
D0784_18185	COG3448	diguanylate cyclase activity
D0784_18190	COG4176	ABC-type proline glycine betaine transport system permease component
D0784_18200	COG1342	Belongs to the UPF0251 family
D0784_18220	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
D0784_18230	COG4948	Mandelate Racemase Muconate Lactonizing
D0784_18270	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
D0784_18280	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0784_18315	COG0318	PFAM AMP-dependent synthetase and ligase
D0784_18320	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0784_18350	COG0786	glutamate:sodium symporter activity
D0784_18355	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
D0784_18365	COG1538	Outer membrane efflux protein
D0784_18375	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0784_18380	COG0583	DNA-binding transcription factor activity
D0784_18415	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
D0784_18420	COG2197	response regulator
D0784_18430	COG0574	Belongs to the PEP-utilizing enzyme family
D0784_18430	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
D0784_18440	COG0252	asparaginase activity
D0784_18460	COG0583	DNA-binding transcription factor activity
D0784_18470	COG2321	neutral zinc metallopeptidase
D0784_18475	COG3122	Protein conserved in bacteria
D0784_18490	COG2255	four-way junction helicase activity
D0784_18500	COG3853	Toxic anion resistance protein (TelA)
D0784_18510	COG1902	pentaerythritol trinitrate reductase activity
D0784_18530	COG0583	DNA-binding transcription factor activity
D0784_18540	COG3501	Rhs element vgr protein
D0784_18555	COG1262	PFAM Formylglycine-generating sulfatase enzyme
D0784_18555	COG0515	serine threonine protein kinase
D0784_18560	COG0513	Belongs to the DEAD box helicase family
D0784_18605	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0784_18630	COG3746	phosphate-selective porin O and P
D0784_18655	COG1028	Short-chain dehydrogenase reductase Sdr
D0784_18705	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
D0784_18725	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
D0784_18735	COG0625	glutathione transferase activity
D0784_18740	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0784_18745	COG1686	Belongs to the peptidase S11 family
D0784_18755	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
D0784_18780	COG0745	RESPONSE REGULATOR receiver
D0784_18780	COG3706	GGDEF domain
D0784_18785	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
D0784_18800	COG1278	Cold shock
D0784_18805	COG1741	Belongs to the pirin family
D0784_18810	COG4667	esterase of the alpha-beta hydrolase superfamily
D0784_18820	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
D0784_18830	COG0523	cobalamin synthesis protein
D0784_18840	COG1846	Transcriptional regulator
D0784_18855	COG3842	ATPase activity
D0784_18860	COG0395	ABC-type sugar transport system, permease component
D0784_18865	COG1175	transmembrane transport
D0784_18875	COG0584	glycerophosphoryl diester phosphodiesterase
D0784_18885	COG0589	response to stress
D0784_18895	COG0488	(ABC) transporter
D0784_18900	COG1505	serine-type exopeptidase activity
D0784_18905	COG2067	long-chain fatty acid transport protein
D0784_18915	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0784_18925	COG1858	cytochrome C peroxidase
D0784_18940	COG0494	nUDIX hydrolase
D0784_18985	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
D0784_19005	COG3383	formate dehydrogenase (NAD+) activity
D0784_19025	COG0842	Transport permease protein
D0784_19030	COG1131	(ABC) transporter
D0784_19040	COG0840	transmembrane signaling receptor activity
D0784_19055	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
D0784_19065	COG4145	pantothenate transmembrane transporter activity
D0784_19070	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0784_19075	COG0800	Aldolase
D0784_19085	COG2706	6-phosphogluconolactonase activity
D0784_19095	COG1881	PFAM PEBP family protein
D0784_19110	COG0798	PFAM Bile acid sodium symporter
D0784_19125	COG1733	regulation of RNA biosynthetic process
D0784_19140	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0784_19145	COG2213	PTS system mannitol-specific
D0784_19150	COG1063	alcohol dehydrogenase
D0784_19160	COG1072	(Pantothenic acid kinase))
D0784_19165	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
D0784_19185	COG0814	amino acid
D0784_19225	COG0739	heme binding
D0784_19230	COG5001	Diguanylate cyclase
D0784_19235	COG0583	DNA-binding transcription factor activity
D0784_19240	COG2814	Major facilitator Superfamily
D0784_19260	COG0697	spore germination
D0784_19275	COG0179	Fumarylacetoacetate (FAA) hydrolase
D0784_19295	COG1280	lysine exporter protein (LysE YggA)
D0784_19305	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
D0784_19315	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D0784_19320	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
D0784_19345	COG1612	heme a metabolic process
D0784_19360	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
D0784_19365	COG2814	Major facilitator Superfamily
D0784_19370	COG0840	transmembrane signaling receptor activity
D0784_19375	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
D0784_19405	COG2897	thiosulfate sulfurtransferase activity
D0784_19460	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
D0784_19505	COG4989	oxidoreductase activity
D0784_19520	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
D0784_19520	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
D0784_19540	COG1073	alpha beta
D0784_19545	COG0583	DNA-binding transcription factor activity
D0784_19565	COG4964	Belongs to the GSP D family
D0784_19575	COG0455	bacterial-type flagellum organization
D0784_19615	COG2885	chlorophyll binding
D0784_19635	COG3706	GGDEF domain
D0784_19660	COG4176	ABC-type proline glycine betaine transport system permease component
D0784_19665	COG0517	IMP dehydrogenase activity
D0784_19665	COG4175	Glycine betaine
D0784_19675	COG0330	HflC and HflK could
D0784_19690	COG2203	Gaf domain
D0784_19690	COG5001	Diguanylate cyclase
D0784_19690	COG4251	negative regulation of phosphorylation
D0784_19690	COG3706	GGDEF domain
D0784_19705	COG0784	Response regulator, receiver
D0784_19705	COG2205	protein histidine kinase activity
D0784_19750	COG0586	Pfam SNARE associated Golgi protein
D0784_19775	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
D0784_19780	COG5001	Diguanylate cyclase
D0784_19790	COG1129	ABC transporter
D0784_19795	COG1172	Belongs to the binding-protein-dependent transport system permease family
D0784_19800	COG1879	ABC-type sugar transport system periplasmic component
D0784_19805	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0784_19810	COG1609	Transcriptional regulator
D0784_19825	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
D0784_19840	COG4607	ABC-type enterochelin transport system periplasmic component
D0784_19845	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0784_19850	COG4605	iron ion homeostasis
D0784_19855	COG4604	ABC transporter, ATP-binding protein
D0784_19860	COG0789	Transcriptional regulator
D0784_19885	COG1289	transmembrane transporter activity
D0784_19890	COG0210	DNA helicase
D0784_19900	COG1879	ABC-type sugar transport system periplasmic component
D0784_19905	COG2205	protein histidine kinase activity
D0784_19905	COG0784	Response regulator, receiver
D0784_19905	COG2198	Histidine kinase
D0784_19935	COG3119	arylsulfatase activity
D0784_19940	COG3119	arylsulfatase activity
D0784_19945	COG3063	Type IV pilus biogenesis stability protein PilW
D0784_19950	COG0714	Associated with various cellular activities
D0784_20010	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
D0784_20020	COG0355	proton-transporting ATP synthase activity, rotational mechanism
D0784_20030	COG0583	DNA-binding transcription factor activity
D0784_20035	COG1597	lipid kinase activity
D0784_20040	COG3111	PFAM Bacterial OB fold (BOF) protein
D0784_20060	COG0641	radical SAM
D0784_20085	COG0501	Belongs to the peptidase M48B family
D0784_20090	COG1704	LemA family
D0784_20095	COG3069	C4-dicarboxylate transmembrane transporter activity
D0784_20125	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
D0784_20130	COG0739	heme binding
D0784_20170	COG3501	Rhs element vgr protein
D0784_20195	COG0515	serine threonine protein kinase
D0784_20230	COG1522	sequence-specific DNA binding
D0784_20300	COG4771	TonB-dependent receptor
D0784_20315	COG3706	GGDEF domain
D0784_20325	COG2197	response regulator
D0784_20330	COG0778	Nitroreductase
D0784_20335	COG0835	chemotaxis
D0784_20335	COG0784	Response regulator, receiver
D0784_20350	COG2962	Rard protein
D0784_20370	COG0671	phosphoesterase, PA-phosphatase related
D0784_20390	COG2076	Multidrug Resistance protein
D0784_20425	COG2067	long-chain fatty acid transport protein
D0784_20430	COG1234	tRNA 3'-trailer cleavage
D0784_20440	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
D0784_20440	COG0069	glutamate synthase activity
D0784_20455	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
D0784_20455	COG2755	lipolytic protein G-D-S-L family
D0784_20465	COG1902	pentaerythritol trinitrate reductase activity
D0784_20470	COG0346	lactoylglutathione lyase activity
D0784_20505	COG0515	serine threonine protein kinase
D0784_20505	COG2815	serine threonine protein kinase
D0784_20540	COG0631	protein serine/threonine phosphatase activity
D0784_20595	COG3501	Rhs element vgr protein
D0784_20610	COG3209	COG3209 Rhs family protein
D0784_20630	COG0420	3'-5' exonuclease activity
D0784_20635	COG0419	ATPase involved in DNA repair
D0784_20645	COG3469	chitinase activity
D0784_20675	COG3040	lipid binding
D0784_20685	COG2814	Major facilitator Superfamily
D0784_20695	COG1288	antiporter activity
D0784_20705	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
D0784_20720	COG2425	protein containing a von Willebrand factor type A (vWA) domain
D0784_20730	COG1472	Belongs to the glycosyl hydrolase 3 family
D0784_20735	COG0583	DNA-binding transcription factor activity
D0784_20740	COG0277	FAD linked oxidase domain protein
D0784_20750	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0784_20825	COG2199	diguanylate cyclase activity
D0784_20835	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D0784_20840	COG2146	nitrite reductase [NAD(P)H] activity
D0784_20845	COG2116	formate transmembrane transporter activity
D0784_20865	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
D0784_20895	COG0534	Mate efflux family protein
D0784_20905	COG2814	Major facilitator Superfamily
D0784_20910	COG3118	belongs to the thioredoxin family
D0784_20915	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
D0784_20940	COG1566	PFAM secretion protein HlyD family protein
D0784_20950	COG0628	permease
D0784_20960	COG1482	cell wall glycoprotein biosynthetic process
D0784_20965	COG2271	Major facilitator Superfamily
D0784_20970	COG3851	Histidine kinase
D0784_20975	COG2197	response regulator
D0784_21040	COG1328	CTP reductase activity
D0784_21045	COG0602	queuosine metabolic process
D0784_21050	COG0534	Mate efflux family protein
D0784_21075	COG3111	PFAM Bacterial OB fold (BOF) protein
D0784_21085	COG0725	ABC transporter, periplasmic molybdate-binding protein
D0784_21090	COG4149	molybdate abc transporter
D0784_21095	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
D0784_21105	COG3706	GGDEF domain
D0784_21105	COG4251	negative regulation of phosphorylation
D0784_21105	COG5001	Diguanylate cyclase
D0784_21105	COG2203	Gaf domain
D0784_21110	COG3706	GGDEF domain
D0784_21110	COG0745	RESPONSE REGULATOR receiver
D0784_21125	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
D0784_21130	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
D0784_21155	COG3140	Belongs to the UPF0181 family
D0784_21225	COG2801	Transposase and inactivated derivatives
D0784_21230	COG0023	Translation Initiation Factor
D0784_21250	COG0045	succinate-CoA ligase (ADP-forming) activity
D0784_21250	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0784_21250	COG1042	CoA-binding domain protein
D0784_21255	COG0583	DNA-binding transcription factor activity
D0784_21270	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D0784_21275	COG3447	MASE1 domain protein
D0784_21275	COG5002	protein histidine kinase activity
D0784_21275	COG5001	Diguanylate cyclase
D0784_21285	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
D0784_21290	COG1984	allophanate hydrolase subunit 2
D0784_21300	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
D0784_21305	COG4181	ATPase activity
D0784_21315	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
D0784_21320	COG3300	MHYT domain
D0784_21320	COG5001	Diguanylate cyclase
D0784_21330	COG0484	heat shock protein binding
D0784_21365	COG2050	protein possibly involved in aromatic compounds catabolism
D0784_21370	COG0501	Belongs to the peptidase M48B family
D0784_21380	COG2067	long-chain fatty acid transport protein
D0784_21385	COG2267	carboxylic ester hydrolase activity
D0784_21400	COG1410	methionine synthase
D0784_21400	COG0646	methionine synthase
D0784_21410	COG0861	Integral membrane protein TerC family
D0784_21415	COG0737	Belongs to the 5'-nucleotidase family
D0784_21420	COG3593	DNA synthesis involved in DNA repair
D0784_21430	COG0583	DNA-binding transcription factor activity
D0784_21440	COG2116	formate transmembrane transporter activity
D0784_21450	COG3038	cytochrome b561
D0784_21465	COG4943	cyclic-guanylate-specific phosphodiesterase activity
D0784_21470	COG0513	Belongs to the DEAD box helicase family
D0784_21475	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
D0784_21490	COG0546	phosphoglycolate phosphatase activity
D0784_21495	COG3437	response regulator, receiver
D0784_21495	COG0784	Response regulator, receiver
D0784_21510	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
D0784_21520	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
D0784_21535	COG2207	Transcriptional regulator
D0784_21540	COG1979	alcohol dehydrogenase
D0784_21550	COG1126	abc transporter atp-binding protein
D0784_21555	COG0765	amino acid transport
D0784_21560	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0784_21565	COG0765	amino acid transport
D0784_21570	COG2200	EAL domain
D0784_21570	COG2199	diguanylate cyclase activity
D0784_21570	COG2203	Gaf domain
D0784_21585	COG1609	Transcriptional regulator
D0784_21590	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0784_21590	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0784_21595	COG1105	Belongs to the carbohydrate kinase PfkB family
D0784_21600	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
D0784_21600	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0784_21600	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0784_21615	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0784_21620	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
D0784_21630	COG0404	The glycine cleavage system catalyzes the degradation of glycine
D0784_21640	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
D0784_21710	COG4977	sequence-specific DNA binding
D0784_21720	COG1733	regulation of RNA biosynthetic process
D0784_21730	COG0641	radical SAM
D0784_21740	COG3119	arylsulfatase activity
D0784_21765	COG0583	DNA-binding transcription factor activity
D0784_21795	COG5640	endopeptidase activity
D0784_21805	COG1132	(ABC) transporter
D0784_21835	COG2816	NAD+ diphosphatase activity
D0784_21850	COG2814	Major facilitator Superfamily
D0784_21935	COG0745	RESPONSE REGULATOR receiver
D0784_21935	COG3706	GGDEF domain
D0784_21945	COG0628	permease
D0784_21975	COG0739	heme binding
D0784_21985	COG1902	pentaerythritol trinitrate reductase activity
D0784_21995	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
D0784_22030	COG2146	nitrite reductase [NAD(P)H] activity
D0784_22030	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
D0784_22035	COG1116	anion transmembrane transporter activity
D0784_22040	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0784_22045	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0784_22045	COG1116	anion transmembrane transporter activity
D0784_22055	COG3707	response regulator
D0784_22075	COG0243	molybdopterin cofactor binding
D0784_22085	COG5001	Diguanylate cyclase
D0784_22085	COG5002	protein histidine kinase activity
D0784_22090	COG0814	amino acid
D0784_22100	COG3706	GGDEF domain
D0784_22120	COG1785	Belongs to the alkaline phosphatase family
D0784_22135	COG0745	RESPONSE REGULATOR receiver
D0784_22175	COG0443	Heat shock 70 kDa protein
D0784_22220	COG2200	EAL domain
D0784_22245	COG4160	amino acid transport
D0784_22250	COG4215	(ABC) transporter
D0784_22255	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
D0784_22260	COG1126	abc transporter atp-binding protein
D0784_22315	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
D0784_22325	COG1012	belongs to the aldehyde dehydrogenase family
D0784_22340	COG1902	pentaerythritol trinitrate reductase activity
D0784_22340	COG0446	pyridine nucleotide-disulphide oxidoreductase
D0784_22350	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
D0784_22355	COG1845	cytochrome c oxidase, subunit III
D0784_22360	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
D0784_22365	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
D0784_22370	COG1028	Short-chain dehydrogenase reductase Sdr
D0784_22380	COG1024	Enoyl-CoA hydratase
D0784_22385	COG1024	Enoyl-CoA hydratase
D0784_22400	COG0183	Belongs to the thiolase family
D0784_22410	COG1960	acyl-CoA dehydrogenase activity
D0784_22415	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
D0784_22420	COG1024	Enoyl-CoA hydratase
D0784_22460	COG3278	Belongs to the heme-copper respiratory oxidase family
D0784_22480	COG1752	Esterase of the alpha-beta hydrolase superfamily
D0784_22490	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
D0784_22510	COG3550	peptidyl-serine autophosphorylation
D0784_22515	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
D0784_22520	COG1484	DNA-dependent DNA replication
D0784_22525	COG4584	PFAM Integrase catalytic
D0784_22590	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
D0784_22595	COG0840	transmembrane signaling receptor activity
D0784_22600	COG4580	involved in the transport of maltose and maltodextrins
D0784_22605	COG1874	Beta-galactosidase
D0784_22615	COG3833	ABC-type maltose transport systems, permease component
D0784_22620	COG1175	transmembrane transport
D0784_22625	COG2182	Extracellular solute-binding protein
D0784_22705	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
D0784_22720	COG0513	Belongs to the DEAD box helicase family
D0784_22725	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
D0784_22740	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
D0784_22755	COG1119	ATPase activity
D0784_22760	COG2200	EAL domain
D0784_22780	COG0513	Belongs to the DEAD box helicase family
D0784_22785	COG5002	protein histidine kinase activity
D0784_22785	COG5001	Diguanylate cyclase
D0784_22785	COG3447	MASE1 domain protein
D0784_22790	COG0523	cobalamin synthesis protein
D0784_22825	COG3530	Putative quorum-sensing-regulated virulence factor
D0784_22860	COG3186	Phenylalanine-4-hydroxylase
D0784_22870	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
D0784_22875	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
D0784_22895	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
D0784_22900	COG1454	alcohol dehydrogenase
D0784_22905	COG2133	pyrroloquinoline quinone binding
D0784_22910	COG1619	proteins homologs of microcin C7 resistance protein MccF
D0784_22920	COG0783	Belongs to the Dps family
D0784_22925	COG0840	transmembrane signaling receptor activity
D0784_22935	COG0577	efflux transmembrane transporter activity
D0784_22935	COG1136	(ABC) transporter
D0784_22955	COG2199	diguanylate cyclase activity
D0784_22965	COG3036	rescue of stalled ribosome
D0784_22970	COG1278	Cold shock
D0784_23000	COG0545	Peptidyl-prolyl cis-trans isomerase
D0784_23005	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0784_23015	COG0840	transmembrane signaling receptor activity
D0784_23040	COG2195	Cleaves the N-terminal amino acid of tripeptides
D0784_23055	COG2197	response regulator
D0784_23060	COG3850	Histidine kinase
D0784_23085	COG3005	denitrification pathway
D0784_23105	COG0183	Belongs to the thiolase family
D0784_23115	COG1280	lysine exporter protein (LysE YggA)
D0784_23125	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D0784_23130	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
D0784_23210	COG0673	inositol 2-dehydrogenase activity
D0784_23215	COG0784	Response regulator, receiver
D0784_23215	COG5002	protein histidine kinase activity
D0784_23215	COG2205	protein histidine kinase activity
D0784_23240	COG0583	DNA-binding transcription factor activity
D0784_23255	COG0531	amino acid
D0784_23260	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0784_23270	COG2205	protein histidine kinase activity
D0784_23275	COG0745	RESPONSE REGULATOR receiver
D0784_23300	COG1566	PFAM secretion protein HlyD family protein
D0784_23305	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
D0784_23310	COG2239	Acts as a magnesium transporter
D0784_23315	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
D0784_23320	COG0402	S-adenosylhomocysteine deaminase activity
D0784_23335	COG1418	mRNA catabolic process
D0784_23350	COG2814	Major facilitator Superfamily
D0784_23360	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
D0784_23380	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
D0784_23395	COG4221	oxidoreductase activity
D0784_23400	COG0745	RESPONSE REGULATOR receiver
D0784_23405	COG2205	protein histidine kinase activity
D0784_23415	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
D0784_23420	COG2194	sulfuric ester hydrolase activity
D0784_23430	COG0673	inositol 2-dehydrogenase activity
D0784_23435	COG4977	sequence-specific DNA binding
D0784_23450	COG2814	Major facilitator Superfamily
D0784_23470	COG0583	DNA-binding transcription factor activity
D0784_23475	COG2249	NAD(P)H dehydrogenase (quinone) activity
D0784_23490	COG0583	DNA-binding transcription factor activity
D0784_23530	COG0366	Alpha amylase catalytic
D0784_23535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
D0784_23540	COG0835	chemotaxis
D0784_23540	COG0784	Response regulator, receiver
D0784_23555	COG0748	coenzyme F420 binding
D0784_23560	COG3721	Heme iron utilization protein
D0784_23570	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
D0784_23575	COG0811	peptide transport
D0784_23580	COG0848	biopolymer transport protein
D0784_23590	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0784_23595	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
D0784_23635	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
D0784_23645	COG0633	Ferredoxin
D0784_23645	COG3217	Mosc domain protein beta barrel domain protein
D0784_23645	COG0633	Ferredoxin
D0784_23645	COG3217	Mosc domain protein beta barrel domain protein
D0784_23650	COG0401	homolog of Blt101
D0784_23665	COG2354	Protein conserved in bacteria
D0784_23700	COG1175	transmembrane transport
D0784_23715	COG3842	ATPase activity
D0784_23725	COG2200	EAL domain
D0784_23730	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
D0784_23745	COG3206	protein involved in exopolysaccharide biosynthesis
D0784_23745	COG0489	protein tyrosine kinase activity
D0784_23790	COG1309	transcriptional regulator
D0784_23795	COG2130	NADP-dependent
D0784_23805	COG0753	catalase activity
D0784_23810	COG2084	Dehydrogenase
D0784_23820	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0784_23825	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0784_23835	COG2207	Transcriptional regulator
D0784_23840	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
D0784_23840	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0784_23840	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
D0784_23885	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
D0784_23890	COG1301	dicarboxylic acid transport
D0784_23895	COG1252	NADH dehydrogenase
D0784_23905	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
D0784_23910	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
D0784_23925	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D0784_23925	COG2885	chlorophyll binding
D0784_23945	COG2885	chlorophyll binding
D0784_23945	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
D0784_23960	COG1028	Short-chain dehydrogenase reductase Sdr
D0784_23965	COG4191	Histidine kinase
D0784_23970	COG2204	response regulator
D0784_23975	COG0110	maltose O-acetyltransferase activity
D0784_24000	COG2197	response regulator
D0784_24030	COG0714	Associated with various cellular activities
D0784_24050	COG2304	oxidoreductase activity
D0784_24065	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
D0784_24070	COG0581	inorganic phosphate transmembrane transporter activity
D0784_24075	COG0573	inorganic phosphate transmembrane transporter activity
D0784_24080	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
D0784_24085	COG0840	transmembrane signaling receptor activity
D0784_24105	COG4771	TonB-dependent receptor
D0784_24110	COG1770	oligopeptidase
D0784_24115	COG0513	Belongs to the DEAD box helicase family
D0784_24125	COG1376	ErfK ybiS ycfS ynhG family protein
D0784_24125	COG1388	LysM domain
D0784_24130	COG0415	Belongs to the DNA photolyase family
D0784_24135	COG0789	Transcriptional regulator
D0784_24140	COG3272	Protein of unknown function (DUF1722)
D0784_24150	COG0813	purine-nucleoside phosphorylase activity
D0784_24165	COG3706	GGDEF domain
D0784_24180	COG1566	PFAM secretion protein HlyD family protein
D0784_24190	COG1122	ATPase activity
D0784_24220	COG0348	domain, Protein
D0784_24225	COG0437	4 iron, 4 sulfur cluster binding
D0784_24230	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
D0784_24250	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
D0784_24260	COG1067	ATP-dependent peptidase activity
D0784_24270	COG4172	Belongs to the ABC transporter superfamily
D0784_24275	COG1505	serine-type exopeptidase activity
D0784_24280	COG0583	DNA-binding transcription factor activity
D0784_24285	COG1620	l-lactate permease
D0784_24290	COG1304	FMN binding
D0784_24300	COG0668	transmembrane transport
D0784_24310	COG1063	alcohol dehydrogenase
D0784_24315	COG2223	nitrite transmembrane transporter activity
D0784_24320	COG2199	diguanylate cyclase activity
D0784_24335	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
D0784_24360	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
D0784_24390	COG1063	alcohol dehydrogenase
D0784_24395	COG0156	8-amino-7-oxononanoate synthase activity
D0784_24420	COG0745	RESPONSE REGULATOR receiver
D0784_24445	COG0346	lactoylglutathione lyase activity
D0784_24510	COG2200	EAL domain
D0784_24530	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
D0784_24545	COG2204	response regulator
D0784_24570	COG1987	bacterial-type flagellum assembly
D0784_24580	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
D0784_24595	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D0784_24605	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
D0784_24610	COG1516	flagellar protein fliS
D0784_24625	COG1580	Controls the rotational direction of flagella during chemotaxis
D0784_24630	COG1191	sigma factor activity
D0784_24635	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
D0784_24640	COG1360	Flagellar Motor Protein
D0784_24665	COG0384	phenazine biosynthesis protein PhzF
D0784_24735	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
D0784_24740	COG4786	Flagellar basal body rod
D0784_24740	COG1256	bacterial-type flagellum assembly
D0784_24750	COG1706	bacterial-type flagellum-dependent cell motility
D0784_24755	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
D0784_24760	COG4786	Flagellar basal body rod
D0784_24765	COG4787	bacterial-type flagellum-dependent cell motility
D0784_24770	COG1749	Flagellar hook protein flgE
D0784_24775	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
D0784_24780	COG1558	bacterial-type flagellum-dependent cell motility
D0784_24785	COG1815	bacterial-type flagellum-dependent cell motility
D0784_24805	COG1388	LysM domain
D0784_24805	COG0741	lytic transglycosylase activity
D0784_24830	COG1760	l-serine dehydratase
D0784_24860	COG0583	DNA-binding transcription factor activity
D0784_24870	COG2866	Carboxypeptidase
D0784_24875	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
D0784_24885	COG2990	Protein conserved in bacteria
D0784_24910	COG3842	ATPase activity
D0784_24915	COG1840	ABC-type Fe3 transport system, periplasmic component
D0784_24945	COG3240	lipase activity
D0784_24970	COG1011	Hydrolase
D0784_25005	COG1765	OsmC-like protein
D0784_25010	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D0784_25010	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
D0784_25025	COG3046	protein related to deoxyribodipyrimidine photolyase
D0784_25030	COG0415	Belongs to the DNA photolyase family
D0784_25035	COG3706	GGDEF domain
D0784_25070	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
D0784_25075	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
D0784_25095	COG3033	Beta-eliminating lyase
D0784_25110	COG0579	oxidoreductase
D0784_25130	COG1114	Component of the transport system for branched-chain amino acids
D0784_25175	COG0583	DNA-binding transcription factor activity
D0784_25185	COG0189	ligase activity
D0784_25190	COG0189	ligase activity
D0784_25190	COG4067	protein conserved in archaea
D0784_25200	COG1166	arginine decarboxylase activity
D0784_25205	COG0010	Belongs to the arginase family
D0784_25210	COG2814	Major facilitator Superfamily
D0784_25215	COG1770	oligopeptidase
D0784_25230	COG1108	ABC-type Mn2 Zn2 transport systems permease components
D0784_25235	COG1121	(ABC) transporter
D0784_25240	COG0803	Belongs to the bacterial solute-binding protein 9 family
D0784_25285	COG0848	biopolymer transport protein
D0784_25290	COG0811	peptide transport
D0784_25295	COG0811	peptide transport
D0784_25315	COG0745	RESPONSE REGULATOR receiver
D0784_25320	COG0584	glycerophosphoryl diester phosphodiesterase
D0784_25330	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
D0784_25395	COG0312	modulator of DNA gyrase
D0784_25400	COG0312	modulator of DNA gyrase
D0784_25405	COG0351	phosphomethylpyrimidine kinase
D0784_25410	COG1116	anion transmembrane transporter activity
D0784_25415	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
D0784_25420	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
D0784_25425	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
D0784_25440	COG0671	phosphoesterase, PA-phosphatase related
D0784_25445	COG0243	molybdopterin cofactor binding
D0784_25450	COG3005	denitrification pathway
D0784_25460	COG1028	Short-chain dehydrogenase reductase Sdr
D0784_25480	COG0456	acetyltransferase
D0784_25520	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0784_25525	COG1929	Belongs to the glycerate kinase type-1 family
D0784_25530	COG3835	regulator
D0784_25625	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
D0784_25625	COG3408	Glycogen debranching enzyme
D0784_25645	COG2814	Major facilitator Superfamily
D0784_25655	COG3047	cAMP biosynthetic process
D0784_25660	COG1357	PFAM Pentapeptide repeats (8 copies)
D0784_25675	COG0534	Mate efflux family protein
D0784_25690	COG2076	Multidrug Resistance protein
D0784_25745	COG0583	DNA-binding transcription factor activity
D0784_25765	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
D0784_25780	COG3152	Membrane
D0784_25800	COG0561	phosphatase activity
D0784_25810	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
D0784_25815	COG0564	pseudouridine synthase activity
D0784_25820	COG0534	Mate efflux family protein
D0784_25825	COG1472	Belongs to the glycosyl hydrolase 3 family
D0784_25845	COG1609	Transcriptional regulator
D0784_25855	COG4608	Belongs to the ABC transporter superfamily
D0784_25860	COG0444	Belongs to the ABC transporter superfamily
D0784_25865	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
D0784_25875	COG0747	negative chemotaxis
D0784_25885	COG1609	Transcriptional regulator
D0784_25890	COG3842	ATPase activity
D0784_25895	COG2723	6-phospho-beta-galactosidase activity
D0784_25900	COG0395	ABC-type sugar transport system, permease component
D0784_25915	COG1609	Transcriptional regulator
D0784_25930	COG5001	Diguanylate cyclase
D0784_25980	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
D0784_25990	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
D0784_25995	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
D0784_26005	COG2259	Doxx family
D0784_26060	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
D0784_26065	COG0251	oxidation-reduction process
D0784_26080	COG0659	secondary active sulfate transmembrane transporter activity
D0784_26090	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
D0784_26100	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
D0784_26105	COG2207	Transcriptional regulator
D0784_26115	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
D0784_26160	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
D0784_26185	COG0786	glutamate:sodium symporter activity
D0784_26190	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
D0784_26195	COG1131	(ABC) transporter
D0784_26230	COG1028	Short-chain dehydrogenase reductase Sdr
D0784_26235	COG0786	glutamate:sodium symporter activity
D0784_26255	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
D0784_26265	COG3279	Response regulator of the LytR AlgR family
D0784_26270	COG3275	phosphorelay sensor kinase activity
D0784_26300	COG0583	DNA-binding transcription factor activity
D0784_26305	COG1566	PFAM secretion protein HlyD family protein
D0784_26320	COG0772	Belongs to the SEDS family
D0784_26345	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
D0784_26345	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
D0784_26355	COG0444	Belongs to the ABC transporter superfamily
D0784_26360	COG4608	Belongs to the ABC transporter superfamily
D0784_26395	COG1444	tRNA N-acetyltransferase activity
D0784_26680	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
D0784_26715	COG3504	Conjugal transfer protein
D0784_26730	COG4962	Type ii secretion system protein e
D0784_26740	COG3451	type IV secretory pathway VirB4
D0784_26745	COG5268	conjugation
D0784_26775	COG1192	Involved in chromosome partitioning