locus-tag class description Vc3S01_0001 PF00258 Flavodoxin Vc3S01_0014 PF02384 N-6 DNA Methylase Vc3S01_0021 PF02899 Phage integrase, N-terminal SAM-like domain Vc3S01_0021 PF00589 Phage integrase family Vc3S01_0022 PF01926 50S ribosome-binding GTPase Vc3S01_0022 PF12631 MnmE helical domain Vc3S01_0022 PF10396 GTP-binding protein TrmE N-terminus Vc3S01_0023 PF02096 60Kd inner membrane protein Vc3S01_0023 PF14849 YidC periplasmic domain Vc3S01_0024 PF00825 Ribonuclease P Vc3S01_0025 PF00468 Ribosomal protein L34 Vc3S01_0026 PF00005 ABC transporter Vc3S01_0027 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_0028 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_0029 PF00308 Bacterial dnaA protein Vc3S01_0029 PF11638 DnaA N-terminal domain Vc3S01_0029 PF08299 Bacterial dnaA protein helix-turn-helix Vc3S01_0030 PF00712 DNA polymerase III beta subunit, N-terminal domain Vc3S01_0030 PF02767 DNA polymerase III beta subunit, central domain Vc3S01_0030 PF02768 DNA polymerase III beta subunit, C-terminal domain Vc3S01_0031 PF02463 RecF/RecN/SMC N terminal domain Vc3S01_0032 PF01751 Toprim domain Vc3S01_0032 PF00204 DNA gyrase B Vc3S01_0032 PF00986 DNA gyrase B subunit, carboxyl terminus Vc3S01_0032 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_0032 PF18053 DNA gyrase B subunit insert domain Vc3S01_0033 PF00011 Hsp20/alpha crystallin family Vc3S01_0034 PF00155 Aminotransferase class I and II Vc3S01_0035 PF05746 DALR anticodon binding domain Vc3S01_0035 PF02092 Glycyl-tRNA synthetase beta subunit Vc3S01_0036 PF02091 Glycyl-tRNA synthetase alpha subunit Vc3S01_0037 PF01169 Uncharacterized protein family UPF0016 Vc3S01_0040 PF01206 Sulfurtransferase TusA Vc3S01_0042 PF03466 LysR substrate binding domain Vc3S01_0042 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_0043 PF00107 Zinc-binding dehydrogenase Vc3S01_0043 PF08240 Alcohol dehydrogenase GroES-like domain Vc3S01_0044 PF00108 Thiolase, N-terminal domain Vc3S01_0044 PF02803 Thiolase, C-terminal domain Vc3S01_0045 PF00378 Enoyl-CoA hydratase/isomerase Vc3S01_0045 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Vc3S01_0045 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Vc3S01_0046 PF01205 Uncharacterized protein family UPF0029 Vc3S01_0046 PF09186 Domain of unknown function (DUF1949) Vc3S01_0047 PF02386 Cation transport protein Vc3S01_0048 PF12724 Flavodoxin domain Vc3S01_0051 PF07732 Multicopper oxidase Vc3S01_0051 PF00394 Multicopper oxidase Vc3S01_0051 PF07731 Multicopper oxidase Vc3S01_0052 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Vc3S01_0053 PF01964 Radical SAM ThiC family Vc3S01_0053 PF13667 ThiC-associated domain Vc3S01_0054 PF02581 Thiamine monophosphate synthase Vc3S01_0055 PF00899 ThiF family Vc3S01_0056 PF02597 ThiS family Vc3S01_0057 PF05690 Thiazole biosynthesis protein ThiG Vc3S01_0058 PF06968 Biotin and Thiamin Synthesis associated domain Vc3S01_0058 PF04055 Radical SAM superfamily Vc3S01_0059 PF01321 Creatinase/Prolidase N-terminal domain Vc3S01_0059 PF00557 Metallopeptidase family M24 Vc3S01_0059 PF01321 Creatinase/Prolidase N-terminal domain Vc3S01_0059 PF00557 Metallopeptidase family M24 Vc3S01_0060 PF03466 LysR substrate binding domain Vc3S01_0060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_0061 PF07690 Major Facilitator Superfamily Vc3S01_0065 PF05114 Protein of unknown function (DUF692) Vc3S01_0067 PF13361 UvrD-like helicase C-terminal domain Vc3S01_0067 PF00580 UvrD/REP helicase N-terminal domain Vc3S01_0069 PF01810 LysE type translocator Vc3S01_0073 PF00892 EamA-like transporter family Vc3S01_0074 PF00271 Helicase conserved C-terminal domain Vc3S01_0074 PF16124 RecQ zinc-binding Vc3S01_0074 PF00570 HRDC domain Vc3S01_0074 PF09382 RQC domain Vc3S01_0074 PF00270 DEAD/DEAH box helicase Vc3S01_0076 PF02592 Putative vitamin uptake transporter Vc3S01_0077 PF02541 Ppx/GppA phosphatase family Vc3S01_0078 PF00270 DEAD/DEAH box helicase Vc3S01_0078 PF00271 Helicase conserved C-terminal domain Vc3S01_0079 PF00085 Thioredoxin Vc3S01_0080 PF07497 Rho termination factor, RNA-binding domain Vc3S01_0080 PF07498 Rho termination factor, N-terminal domain Vc3S01_0080 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Vc3S01_0082 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Vc3S01_0083 PF00111 2Fe-2S iron-sulfur cluster binding domain Vc3S01_0084 PF00175 Oxidoreductase NAD-binding domain Vc3S01_0087 PF07219 HemY protein N-terminus Vc3S01_0088 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Vc3S01_0089 PF02602 Uroporphyrinogen-III synthase HemD Vc3S01_0090 PF03900 Porphobilinogen deaminase, C-terminal domain Vc3S01_0090 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Vc3S01_0091 PF01295 Adenylate cyclase, class-I Vc3S01_0091 PF12633 Adenylate cyclase NT domain Vc3S01_0092 PF01491 Frataxin-like domain Vc3S01_0094 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Vc3S01_0094 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Vc3S01_0095 PF01678 Diaminopimelate epimerase Vc3S01_0097 PF02899 Phage integrase, N-terminal SAM-like domain Vc3S01_0097 PF00589 Phage integrase family Vc3S01_0098 PF13419 Haloacid dehalogenase-like hydrolase Vc3S01_0099 PF08495 FIST N domain Vc3S01_0099 PF00563 EAL domain Vc3S01_0099 PF10442 FIST C domain Vc3S01_0099 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_0104 PF12146 Serine aminopeptidase, S33 Vc3S01_0105 PF01810 LysE type translocator Vc3S01_0106 PF00563 EAL domain Vc3S01_0106 PF08668 HDOD domain Vc3S01_0107 PF01022 Bacterial regulatory protein, arsR family Vc3S01_0108 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Vc3S01_0108 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Vc3S01_0113 PF10694 Protein of unknown function (DUF2500) Vc3S01_0119 PF01914 MarC family integral membrane protein Vc3S01_0122 PF02881 SRP54-type protein, helical bundle domain Vc3S01_0122 PF00448 SRP54-type protein, GTPase domain Vc3S01_0123 PF00005 ABC transporter Vc3S01_0124 PF18075 FtsX extracellular domain Vc3S01_0125 PF04542 Sigma-70 region 2 Vc3S01_0125 PF04545 Sigma-70, region 4 Vc3S01_0125 PF00140 Sigma-70 factor, region 1.2 Vc3S01_0126 PF00581 Rhodanese-like domain Vc3S01_0127 PF01694 Rhomboid family Vc3S01_0127 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease Vc3S01_0128 PF03748 Flagellar basal body-associated protein FliL Vc3S01_0129 PF04345 Chorismate lyase Vc3S01_0130 PF01040 UbiA prenyltransferase family Vc3S01_0131 PF01553 Acyltransferase Vc3S01_0132 PF01726 LexA DNA binding domain Vc3S01_0132 PF00717 Peptidase S24-like Vc3S01_0134 PF01554 MatE Vc3S01_0135 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_0135 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Vc3S01_0136 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_0138 PF05958 tRNA (Uracil-5-)-methyltransferase Vc3S01_0139 PF07715 TonB-dependent Receptor Plug Domain Vc3S01_0139 PF00593 TonB dependent receptor Vc3S01_0141 PF01177 Asp/Glu/Hydantoin racemase Vc3S01_0149 PF13091 PLD-like domain Vc3S01_0151 PF01565 FAD binding domain Vc3S01_0151 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Vc3S01_0152 PF08279 HTH domain Vc3S01_0152 PF03099 Biotin/lipoate A/B protein ligase family Vc3S01_0152 PF02237 Biotin protein ligase C terminal domain Vc3S01_0153 PF00485 Phosphoribulokinase / Uridine kinase family Vc3S01_0154 PF03144 Elongation factor Tu domain 2 Vc3S01_0154 PF03143 Elongation factor Tu C-terminal domain Vc3S01_0154 PF00009 Elongation factor Tu GTP binding domain Vc3S01_0155 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Vc3S01_0156 PF02357 Transcription termination factor nusG Vc3S01_0156 PF00467 KOW motif Vc3S01_0157 PF03946 Ribosomal protein L11, N-terminal domain Vc3S01_0157 PF00298 Ribosomal protein L11, RNA binding domain Vc3S01_0158 PF00687 Ribosomal protein L1p/L10e family Vc3S01_0159 PF00466 Ribosomal protein L10 Vc3S01_0160 PF00542 Ribosomal protein L7/L12 C-terminal domain Vc3S01_0160 PF16320 Ribosomal protein L7/L12 dimerisation domain Vc3S01_0161 PF04565 RNA polymerase Rpb2, domain 3 Vc3S01_0161 PF00562 RNA polymerase Rpb2, domain 6 Vc3S01_0161 PF04561 RNA polymerase Rpb2, domain 2 Vc3S01_0161 PF04563 RNA polymerase beta subunit Vc3S01_0161 PF10385 RNA polymerase beta subunit external 1 domain Vc3S01_0161 PF04560 RNA polymerase Rpb2, domain 7 Vc3S01_0162 PF00623 RNA polymerase Rpb1, domain 2 Vc3S01_0162 PF04998 RNA polymerase Rpb1, domain 5 Vc3S01_0162 PF04997 RNA polymerase Rpb1, domain 1 Vc3S01_0162 PF05000 RNA polymerase Rpb1, domain 4 Vc3S01_0162 PF04983 RNA polymerase Rpb1, domain 3 Vc3S01_0165 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Vc3S01_0166 PF00293 NUDIX domain Vc3S01_0166 PF09297 NADH pyrophosphatase zinc ribbon domain Vc3S01_0169 PF01208 Uroporphyrinogen decarboxylase (URO-D) Vc3S01_0170 PF03167 Uracil DNA glycosylase superfamily Vc3S01_0171 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Vc3S01_0172 PF04222 Protein of unknown function (DUF416) Vc3S01_0173 PF01595 Cyclin M transmembrane N-terminal domain Vc3S01_0173 PF00571 CBS domain Vc3S01_0174 PF00216 Bacterial DNA-binding protein Vc3S01_0176 PF02844 Phosphoribosylglycinamide synthetase, N domain Vc3S01_0176 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Vc3S01_0176 PF02843 Phosphoribosylglycinamide synthetase, C domain Vc3S01_0177 PF02142 MGS-like domain Vc3S01_0177 PF01808 AICARFT/IMPCHase bienzyme Vc3S01_0179 PF13411 MerR HTH family regulatory protein Vc3S01_0180 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_0180 PF18500 CadC C-terminal domain 1 Vc3S01_0181 PF13520 Amino acid permease Vc3S01_0182 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Vc3S01_0182 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Vc3S01_0182 PF01276 Orn/Lys/Arg decarboxylase, major domain Vc3S01_0188 PF05230 MASE2 domain Vc3S01_0188 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_0189 PF02954 Bacterial regulatory protein, Fis family Vc3S01_0190 PF01207 Dihydrouridine synthase (Dus) Vc3S01_0192 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Vc3S01_0192 PF02785 Biotin carboxylase C-terminal domain Vc3S01_0192 PF00289 Biotin carboxylase, N-terminal domain Vc3S01_0193 PF00364 Biotin-requiring enzyme Vc3S01_0194 PF01220 Dehydroquinase class II Vc3S01_0195 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_0195 PF00501 AMP-binding enzyme Vc3S01_0195 PF16177 Acetyl-coenzyme A synthetase N-terminus Vc3S01_0198 PF12832 MFS_1 like family Vc3S01_0199 PF00672 HAMP domain Vc3S01_0199 PF01627 Hpt domain Vc3S01_0199 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_0199 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_0199 PF00072 Response regulator receiver domain Vc3S01_0200 PF10415 Fumarase C C-terminus Vc3S01_0200 PF00206 Lyase Vc3S01_0203 PF00474 Sodium:solute symporter family Vc3S01_0205 PF01914 MarC family integral membrane protein Vc3S01_0206 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_0206 PF00072 Response regulator receiver domain Vc3S01_0207 PF11412 Disulphide bond corrector protein DsbC Vc3S01_0207 PF02683 Cytochrome C biogenesis protein transmembrane region Vc3S01_0208 PF03605 Anaerobic c4-dicarboxylate membrane transporter Vc3S01_0209 PF00206 Lyase Vc3S01_0209 PF10415 Fumarase C C-terminus Vc3S01_0210 PF04186 FxsA cytoplasmic membrane protein Vc3S01_0211 PF00588 SpoU rRNA Methylase family Vc3S01_0212 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Vc3S01_0212 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Vc3S01_0213 PF00672 HAMP domain Vc3S01_0213 PF16527 Two-component sensor protein CpxA, periplasmic domain Vc3S01_0213 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_0213 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_0214 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_0214 PF00072 Response regulator receiver domain Vc3S01_0216 PF01545 Cation efflux family Vc3S01_0216 PF16916 Dimerisation domain of Zinc Transporter Vc3S01_0217 PF00365 Phosphofructokinase Vc3S01_0218 PF01554 MatE Vc3S01_0219 PF00166 Chaperonin 10 Kd subunit Vc3S01_0220 PF00118 TCP-1/cpn60 chaperonin family Vc3S01_0222 PF02308 MgtC family Vc3S01_0223 PF04055 Radical SAM superfamily Vc3S01_0224 PF08207 Elongation factor P (EF-P) KOW-like domain Vc3S01_0224 PF01132 Elongation factor P (EF-P) OB domain Vc3S01_0224 PF09285 Elongation factor P, C-terminal Vc3S01_0227 PF02313 Fumarate reductase subunit D Vc3S01_0228 PF02300 Fumarate reductase subunit C Vc3S01_0229 PF13183 4Fe-4S dicluster domain Vc3S01_0229 PF13085 2Fe-2S iron-sulfur cluster binding domain Vc3S01_0230 PF00890 FAD binding domain Vc3S01_0230 PF02910 Fumarate reductase flavoprotein C-term Vc3S01_0231 PF00152 tRNA synthetases class II (D, K and N) Vc3S01_0233 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_0233 PF08360 QacR-like protein, C-terminal region Vc3S01_0235 PF01551 Peptidase family M23 Vc3S01_0236 PF00132 Bacterial transferase hexapeptide (six repeats) Vc3S01_0236 PF06426 Serine acetyltransferase, N-terminal Vc3S01_0237 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Vc3S01_0237 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Vc3S01_0238 PF02556 Preprotein translocase subunit SecB Vc3S01_0239 PF00581 Rhodanese-like domain Vc3S01_0240 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Vc3S01_0240 PF01676 Metalloenzyme superfamily Vc3S01_0242 PF00672 HAMP domain Vc3S01_0242 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_0243 PF00939 Sodium:sulfate symporter transmembrane region Vc3S01_0244 PF02666 Phosphatidylserine decarboxylase Vc3S01_0245 PF03193 RsgA GTPase Vc3S01_0246 PF00929 Exonuclease Vc3S01_0247 PF08331 Domain of unknown function (DUF1730) Vc3S01_0248 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Vc3S01_0249 PF01520 N-acetylmuramoyl-L-alanine amidase Vc3S01_0250 PF08676 MutL C terminal dimerisation domain Vc3S01_0250 PF01119 DNA mismatch repair protein, C-terminal domain Vc3S01_0252 PF17209 Hfq protein Vc3S01_0253 PF16360 GTP-binding GTPase Middle Region Vc3S01_0253 PF13167 GTP-binding GTPase N-terminal Vc3S01_0253 PF01926 50S ribosome-binding GTPase Vc3S01_0254 PF12221 Bacterial membrane protein N terminal Vc3S01_0254 PF01145 SPFH domain / Band 7 family Vc3S01_0255 PF01145 SPFH domain / Band 7 family Vc3S01_0256 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) Vc3S01_0257 PF00709 Adenylosuccinate synthetase Vc3S01_0258 PF08238 Sel1 repeat Vc3S01_0259 PF00970 Oxidoreductase FAD-binding domain Vc3S01_0259 PF00175 Oxidoreductase NAD-binding domain Vc3S01_0259 PF00042 Globin Vc3S01_0260 PF02082 Transcriptional regulator Vc3S01_0261 PF08206 Ribonuclease B OB domain Vc3S01_0261 PF08461 Ribonuclease R winged-helix domain Vc3S01_0261 PF17876 Cold shock domain Vc3S01_0261 PF00575 S1 RNA binding domain Vc3S01_0261 PF00773 RNB domain Vc3S01_0262 PF08032 RNA 2'-O ribose methyltransferase substrate binding Vc3S01_0262 PF00588 SpoU rRNA Methylase family Vc3S01_0263 PF13419 Haloacid dehalogenase-like hydrolase Vc3S01_0264 PF00579 tRNA synthetases class I (W and Y) Vc3S01_0267 PF00117 Glutamine amidotransferase class-I Vc3S01_0268 PF00202 Aminotransferase class-III Vc3S01_0269 PF00202 Aminotransferase class-III Vc3S01_0270 PF04958 Arginine N-succinyltransferase beta subunit Vc3S01_0271 PF00171 Aldehyde dehydrogenase family Vc3S01_0273 PF00027 Cyclic nucleotide-binding domain Vc3S01_0273 PF13545 Crp-like helix-turn-helix domain Vc3S01_0274 PF00485 Phosphoribulokinase / Uridine kinase family Vc3S01_0275 PF06794 Uncharacterised protein family (UPF0270) Vc3S01_0276 PF00561 alpha/beta hydrolase fold Vc3S01_0278 PF00005 ABC transporter Vc3S01_0278 PF12848 ABC transporter Vc3S01_0279 PF02525 Flavodoxin-like fold Vc3S01_0280 PF00999 Sodium/hydrogen exchanger family Vc3S01_0280 PF02254 TrkA-N domain Vc3S01_0282 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Vc3S01_0284 PF01112 Asparaginase Vc3S01_0285 PF04102 SlyX Vc3S01_0287 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Vc3S01_0287 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Vc3S01_0288 PF13309 HTH domain Vc3S01_0288 PF08348 YheO-like PAS domain Vc3S01_0289 PF02635 DsrE/DsrF-like family Vc3S01_0290 PF02635 DsrE/DsrF-like family Vc3S01_0291 PF04077 DsrH like protein Vc3S01_0292 PF00164 Ribosomal protein S12/S23 Vc3S01_0293 PF00177 Ribosomal protein S7p/S5e Vc3S01_0294 PF00679 Elongation factor G C-terminus Vc3S01_0294 PF14492 Elongation Factor G, domain II Vc3S01_0294 PF03764 Elongation factor G, domain IV Vc3S01_0294 PF00009 Elongation factor Tu GTP binding domain Vc3S01_0294 PF03144 Elongation factor Tu domain 2 Vc3S01_0295 PF03143 Elongation factor Tu C-terminal domain Vc3S01_0295 PF03144 Elongation factor Tu domain 2 Vc3S01_0295 PF00009 Elongation factor Tu GTP binding domain Vc3S01_0296 PF04324 BFD-like [2Fe-2S] binding domain Vc3S01_0297 PF00210 Ferritin-like domain Vc3S01_0298 PF03949 Malic enzyme, NAD binding domain Vc3S01_0298 PF00390 Malic enzyme, N-terminal domain Vc3S01_0299 PF01340 Met Apo-repressor, MetJ Vc3S01_0300 PF01053 Cys/Met metabolism PLP-dependent enzyme Vc3S01_0301 PF00696 Amino acid kinase family Vc3S01_0301 PF00742 Homoserine dehydrogenase Vc3S01_0301 PF03447 Homoserine dehydrogenase, NAD binding domain Vc3S01_0302 PF02219 Methylenetetrahydrofolate reductase Vc3S01_0304 PF00311 Phosphoenolpyruvate carboxylase Vc3S01_0305 PF07687 Peptidase dimerisation domain Vc3S01_0305 PF01546 Peptidase family M20/M25/M40 Vc3S01_0306 PF01118 Semialdehyde dehydrogenase, NAD binding domain Vc3S01_0306 PF02774 Semialdehyde dehydrogenase, dimerisation domain Vc3S01_0307 PF00696 Amino acid kinase family Vc3S01_0308 PF00764 Arginosuccinate synthase Vc3S01_0309 PF00206 Lyase Vc3S01_0309 PF14698 Argininosuccinate lyase C-terminal Vc3S01_0309 PF00583 Acetyltransferase (GNAT) family Vc3S01_0312 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Vc3S01_0312 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_0313 PF00462 Glutaredoxin Vc3S01_0313 PF08534 Redoxin Vc3S01_0314 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_0314 PF03466 LysR substrate binding domain Vc3S01_0315 PF17092 Penicillin-binding protein OB-like domain Vc3S01_0315 PF00905 Penicillin binding protein transpeptidase domain Vc3S01_0315 PF00912 Transglycosylase Vc3S01_0320 PF11741 AMIN domain Vc3S01_0320 PF00263 Bacterial type II and III secretion system protein Vc3S01_0320 PF03958 Bacterial type II/III secretion system short domain Vc3S01_0320 PF07660 Secretin and TonB N terminus short domain Vc3S01_0321 PF01202 Shikimate kinase Vc3S01_0322 PF01761 3-dehydroquinate synthase Vc3S01_0324 PF02086 D12 class N6 adenine-specific DNA methyltransferase Vc3S01_0325 PF00834 Ribulose-phosphate 3 epimerase family Vc3S01_0326 PF01250 Ribosomal protein S6 Vc3S01_0327 PF01084 Ribosomal protein S18 Vc3S01_0328 PF03948 Ribosomal protein L9, C-terminal domain Vc3S01_0328 PF01281 Ribosomal protein L9, N-terminal domain Vc3S01_0330 PF03796 DnaB-like helicase C terminal domain Vc3S01_0330 PF00772 DnaB-like helicase N terminal domain Vc3S01_0331 PF00842 Alanine racemase, C-terminal domain Vc3S01_0331 PF01168 Alanine racemase, N-terminal domain Vc3S01_0333 PF01894 Uncharacterised protein family UPF0047 Vc3S01_0334 PF00342 Phosphoglucose isomerase Vc3S01_0336 PF01475 Ferric uptake regulator family Vc3S01_0347 PF06122 Conjugative relaxosome accessory transposon protein Vc3S01_0353 PF02796 Helix-turn-helix domain of resolvase Vc3S01_0353 PF00239 Resolvase, N terminal domain Vc3S01_0358 PF01207 Dihydrouridine synthase (Dus) Vc3S01_0362 PF00667 FAD binding domain Vc3S01_0362 PF00258 Flavodoxin Vc3S01_0362 PF00175 Oxidoreductase NAD-binding domain Vc3S01_0363 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Vc3S01_0363 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Vc3S01_0364 PF01507 Phosphoadenosine phosphosulfate reductase family Vc3S01_0370 PF00999 Sodium/hydrogen exchanger family Vc3S01_0371 PF02310 B12 binding domain Vc3S01_0371 PF02607 B12 binding domain Vc3S01_0371 PF02965 Vitamin B12 dependent methionine synthase, activation domain Vc3S01_0371 PF00809 Pterin binding enzyme Vc3S01_0371 PF02574 Homocysteine S-methyltransferase Vc3S01_0372 PF01842 ACT domain Vc3S01_0372 PF00696 Amino acid kinase family Vc3S01_0373 PF00266 Aminotransferase class-V Vc3S01_0375 PF17755 UvrA DNA-binding domain Vc3S01_0375 PF00005 ABC transporter Vc3S01_0375 PF17760 UvrA interaction domain Vc3S01_0376 PF00483 Nucleotidyl transferase Vc3S01_0377 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_0378 PF00436 Single-strand binding protein family Vc3S01_0379 PF00563 EAL domain Vc3S01_0379 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_0379 PF17157 Gammaproteobacterial periplasmic sensor domain Vc3S01_0383 PF03958 Bacterial type II/III secretion system short domain Vc3S01_0383 PF00263 Bacterial type II and III secretion system protein Vc3S01_0384 PF01471 Putative peptidoglycan binding domain Vc3S01_0384 PF13401 AAA domain Vc3S01_0386 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Vc3S01_0386 PF00437 Type II/IV secretion system protein Vc3S01_0387 PF00482 Type II secretion system (T2SS), protein F Vc3S01_0389 PF08334 Type II secretion system (T2SS), protein G Vc3S01_0389 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_0397 PF04085 rod shape-determining protein MreC Vc3S01_0398 PF04093 rod shape-determining protein MreD Vc3S01_0399 PF02545 Maf-like protein Vc3S01_0400 PF00575 S1 RNA binding domain Vc3S01_0400 PF10150 Ribonuclease E/G family Vc3S01_0401 PF13502 AsmA-like C-terminal region Vc3S01_0401 PF13116 Protein of unknown function Vc3S01_0402 PF00795 Carbon-nitrogen hydrolase Vc3S01_0403 PF01523 Putative modulator of DNA gyrase Vc3S01_0404 PF13638 PIN domain Vc3S01_0404 PF02562 PhoH-like protein Vc3S01_0405 PF18339 RapA N-terminal Tudor like domain 1 Vc3S01_0405 PF00176 SNF2 family N-terminal domain Vc3S01_0405 PF12137 RNA polymerase recycling family C-terminal Vc3S01_0405 PF00271 Helicase conserved C-terminal domain Vc3S01_0405 PF18337 RapA N-terminal Tudor like domain Vc3S01_0407 PF00849 RNA pseudouridylate synthase Vc3S01_0408 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Vc3S01_0408 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Vc3S01_0409 PF04751 Protein of unknown function (DUF615) Vc3S01_0410 PF01523 Putative modulator of DNA gyrase Vc3S01_0411 PF01769 Divalent cation transporter Vc3S01_0411 PF03448 MgtE intracellular N domain Vc3S01_0411 PF00571 CBS domain Vc3S01_0412 PF00381 PTS HPr component phosphorylation site Vc3S01_0413 PF03668 P-loop ATPase protein family Vc3S01_0414 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Vc3S01_0415 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Vc3S01_0416 PF00309 Sigma-54 factor, Activator interacting domain (AID) Vc3S01_0416 PF04552 Sigma-54, DNA binding domain Vc3S01_0416 PF04963 Sigma-54 factor, core binding domain Vc3S01_0417 PF00005 ABC transporter Vc3S01_0417 PF12399 Branched-chain amino acid ATP-binding cassette transporter Vc3S01_0418 PF03968 OstA-like protein Vc3S01_0420 PF00571 CBS domain Vc3S01_0420 PF01380 SIS domain Vc3S01_0421 PF01699 Sodium/calcium exchanger protein Vc3S01_0422 PF00005 ABC transporter Vc3S01_0423 PF02405 Permease MlaE Vc3S01_0424 PF02470 MlaD protein Vc3S01_0425 PF05494 MlaC protein Vc3S01_0427 PF01722 BolA-like protein Vc3S01_0428 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Vc3S01_0429 PF01553 Acyltransferase Vc3S01_0430 PF01042 Endoribonuclease L-PSP Vc3S01_0431 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Vc3S01_0431 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Vc3S01_0432 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Vc3S01_0432 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Vc3S01_0434 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Vc3S01_0434 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Vc3S01_0436 PF06877 Regulator of ribonuclease activity B Vc3S01_0438 PF00583 Acetyltransferase (GNAT) family Vc3S01_0440 PF10458 Valyl tRNA synthetase tRNA binding arm Vc3S01_0440 PF00133 tRNA synthetases class I (I, L, M and V) Vc3S01_0440 PF08264 Anticodon-binding domain of tRNA Vc3S01_0441 PF04364 DNA polymerase III chi subunit, HolC Vc3S01_0442 PF02789 Cytosol aminopeptidase family, N-terminal domain Vc3S01_0442 PF00883 Cytosol aminopeptidase family, catalytic domain Vc3S01_0443 PF03739 Lipopolysaccharide export system permease LptF/LptG Vc3S01_0444 PF03739 Lipopolysaccharide export system permease LptF/LptG Vc3S01_0446 PF00106 short chain dehydrogenase Vc3S01_0448 PF01522 Polysaccharide deacetylase Vc3S01_0450 PF02378 Phosphotransferase system, EIIC Vc3S01_0451 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Vc3S01_0452 PF02056 Family 4 glycosyl hydrolase Vc3S01_0452 PF11975 Family 4 glycosyl hydrolase C-terminal domain Vc3S01_0453 PF04794 YdjC-like protein Vc3S01_0455 PF00072 Response regulator receiver domain Vc3S01_0458 PF00171 Aldehyde dehydrogenase family Vc3S01_0459 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_0459 PF00672 HAMP domain Vc3S01_0459 PF17200 Single Cache domain 2 Vc3S01_0461 PF01464 Transglycosylase SLT domain Vc3S01_0461 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Vc3S01_0462 PF04362 Bacterial Fe(2+) trafficking Vc3S01_0463 PF00633 Helix-hairpin-helix motif Vc3S01_0463 PF14815 NUDIX domain Vc3S01_0463 PF00730 HhH-GPD superfamily base excision DNA repair protein Vc3S01_0465 PF02390 Putative methyltransferase Vc3S01_0466 PF02086 D12 class N6 adenine-specific DNA methyltransferase Vc3S01_0467 PF04960 Glutaminase Vc3S01_0468 PF06969 HemN C-terminal domain Vc3S01_0468 PF04055 Radical SAM superfamily Vc3S01_0469 PF01725 Ham1 family Vc3S01_0471 PF02594 Uncharacterised ACR, YggU family COG1872 Vc3S01_0472 PF02325 YGGT family Vc3S01_0473 PF03807 NADP oxidoreductase coenzyme F420-dependent Vc3S01_0473 PF14748 Pyrroline-5-carboxylate reductase dimerisation Vc3S01_0474 PF01168 Alanine racemase, N-terminal domain Vc3S01_0475 PF00437 Type II/IV secretion system protein Vc3S01_0476 PF00437 Type II/IV secretion system protein Vc3S01_0477 PF03652 Holliday junction resolvase Vc3S01_0478 PF02622 Uncharacterized ACR, COG1678 Vc3S01_0479 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Vc3S01_0479 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Vc3S01_0480 PF04452 RNA methyltransferase Vc3S01_0481 PF04231 Endonuclease I Vc3S01_0482 PF10263 SprT-like family Vc3S01_0482 PF17283 SprT-like zinc ribbon domain Vc3S01_0484 PF02772 S-adenosylmethionine synthetase, central domain Vc3S01_0484 PF02773 S-adenosylmethionine synthetase, C-terminal domain Vc3S01_0484 PF00438 S-adenosylmethionine synthetase, N-terminal domain Vc3S01_0485 PF02780 Transketolase, C-terminal domain Vc3S01_0485 PF00456 Transketolase, thiamine diphosphate binding domain Vc3S01_0485 PF02779 Transketolase, pyrimidine binding domain Vc3S01_0486 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Vc3S01_0486 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Vc3S01_0487 PF00162 Phosphoglycerate kinase Vc3S01_0488 PF01116 Fructose-bisphosphate aldolase class-II Vc3S01_0490 PF00924 Mechanosensitive ion channel Vc3S01_0490 PF05552 Conserved TM helix Vc3S01_0492 PF01810 LysE type translocator Vc3S01_0493 PF03466 LysR substrate binding domain Vc3S01_0493 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_0494 PF04402 Protein of unknown function (DUF541) Vc3S01_0495 PF01842 ACT domain Vc3S01_0495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Vc3S01_0495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Vc3S01_0496 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Vc3S01_0497 PF01812 5-formyltetrahydrofolate cyclo-ligase family Vc3S01_0498 PF05164 Cell division protein ZapA Vc3S01_0499 PF03695 Uncharacterised protein family (UPF0149) Vc3S01_0500 PF01494 FAD binding domain Vc3S01_0501 PF01494 FAD binding domain Vc3S01_0505 PF03937 Flavinator of succinate dehydrogenase Vc3S01_0507 PF00890 FAD binding domain Vc3S01_0507 PF02910 Fumarate reductase flavoprotein C-term Vc3S01_0508 PF04542 Sigma-70 region 2 Vc3S01_0508 PF08281 Sigma-70, region 4 Vc3S01_0509 PF03873 Anti sigma-E protein RseA, C-terminal domain Vc3S01_0509 PF03872 Anti sigma-E protein RseA, N-terminal domain Vc3S01_0510 PF03888 MucB/RseB N-terminal domain Vc3S01_0510 PF17188 MucB/RseB C-terminal domain Vc3S01_0512 PF00679 Elongation factor G C-terminus Vc3S01_0512 PF00009 Elongation factor Tu GTP binding domain Vc3S01_0512 PF03144 Elongation factor Tu domain 2 Vc3S01_0512 PF06421 GTP-binding protein LepA C-terminus Vc3S01_0513 PF10502 Signal peptidase, peptidase S26 Vc3S01_0514 PF14622 Ribonuclease-III-like Vc3S01_0514 PF00035 Double-stranded RNA binding motif Vc3S01_0515 PF01926 50S ribosome-binding GTPase Vc3S01_0515 PF07650 KH domain Vc3S01_0516 PF11967 Recombination protein O N terminal Vc3S01_0516 PF02565 Recombination protein O C terminal Vc3S01_0517 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Vc3S01_0518 PF01648 4'-phosphopantetheinyl transferase superfamily Vc3S01_0519 PF00672 HAMP domain Vc3S01_0519 PF01627 Hpt domain Vc3S01_0519 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Vc3S01_0519 PF00072 Response regulator receiver domain Vc3S01_0519 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_0519 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_0520 PF05958 tRNA (Uracil-5-)-methyltransferase Vc3S01_0520 PF01938 TRAM domain Vc3S01_0521 PF13291 ACT domain Vc3S01_0521 PF04607 Region found in RelA / SpoT proteins Vc3S01_0521 PF02824 TGS domain Vc3S01_0522 PF03819 MazG nucleotide pyrophosphohydrolase domain Vc3S01_0523 PF06418 CTP synthase N-terminus Vc3S01_0523 PF00117 Glutamine amidotransferase class-I Vc3S01_0524 PF03952 Enolase, N-terminal domain Vc3S01_0524 PF00113 Enolase, C-terminal TIM barrel domain Vc3S01_0525 PF04977 Septum formation initiator Vc3S01_0526 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Vc3S01_0527 PF02542 YgbB family Vc3S01_0528 PF01142 tRNA pseudouridine synthase D (TruD) Vc3S01_0529 PF01975 Survival protein SurE Vc3S01_0531 PF01476 LysM domain Vc3S01_0531 PF01551 Peptidase family M23 Vc3S01_0532 PF00140 Sigma-70 factor, region 1.2 Vc3S01_0532 PF04545 Sigma-70, region 4 Vc3S01_0532 PF04542 Sigma-70 region 2 Vc3S01_0532 PF04539 Sigma-70 region 3 Vc3S01_0533 PF05192 MutS domain III Vc3S01_0533 PF00488 MutS domain V Vc3S01_0533 PF05190 MutS family domain IV Vc3S01_0533 PF05188 MutS domain II Vc3S01_0533 PF01624 MutS domain I Vc3S01_0534 PF02464 Competence-damaged protein Vc3S01_0535 PF00154 recA bacterial DNA recombination protein Vc3S01_0536 PF02631 RecX family Vc3S01_0537 PF01411 tRNA synthetases class II (A) Vc3S01_0537 PF02272 DHHA1 domain Vc3S01_0537 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Vc3S01_0538 PF00696 Amino acid kinase family Vc3S01_0538 PF13840 ACT domain Vc3S01_0538 PF01842 ACT domain Vc3S01_0539 PF02599 Global regulator protein family Vc3S01_0541 PF04277 Oxaloacetate decarboxylase, gamma chain Vc3S01_0542 PF00364 Biotin-requiring enzyme Vc3S01_0542 PF00682 HMGL-like Vc3S01_0542 PF02436 Conserved carboxylase domain Vc3S01_0543 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit Vc3S01_0545 PF09335 SNARE associated Golgi protein Vc3S01_0546 PF05193 Peptidase M16 inactive domain Vc3S01_0546 PF00675 Insulinase (Peptidase family M16) Vc3S01_0547 PF04262 Glutamate-cysteine ligase Vc3S01_0549 PF02664 S-Ribosylhomocysteinase (LuxS) Vc3S01_0550 PF01595 Cyclin M transmembrane N-terminal domain Vc3S01_0550 PF00571 CBS domain Vc3S01_0550 PF03471 Transporter associated domain Vc3S01_0551 PF01578 Cytochrome C assembly protein Vc3S01_0552 PF02881 SRP54-type protein, helical bundle domain Vc3S01_0552 PF00448 SRP54-type protein, GTPase domain Vc3S01_0552 PF02978 Signal peptide binding domain Vc3S01_0553 PF00886 Ribosomal protein S16 Vc3S01_0554 PF01782 RimM N-terminal domain Vc3S01_0554 PF05239 PRC-barrel domain Vc3S01_0555 PF01746 tRNA (Guanine-1)-methyltransferase Vc3S01_0556 PF01245 Ribosomal protein L19 Vc3S01_0558 PF03884 DNA gyrase inhibitor YacG Vc3S01_0559 PF07072 Cell division protein Vc3S01_0560 PF01121 Dephospho-CoA kinase Vc3S01_0561 PF01478 Type IV leader peptidase family Vc3S01_0561 PF06750 Bacterial Peptidase A24 N-terminal domain Vc3S01_0562 PF00482 Type II secretion system (T2SS), protein F Vc3S01_0563 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Vc3S01_0563 PF00437 Type II/IV secretion system protein Vc3S01_0565 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Vc3S01_0565 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Vc3S01_0566 PF01510 N-acetylmuramoyl-L-alanine amidase Vc3S01_0567 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_0567 PF07729 FCD domain Vc3S01_0568 PF17831 Pyruvate dehydrogenase E1 component middle domain Vc3S01_0568 PF00456 Transketolase, thiamine diphosphate binding domain Vc3S01_0569 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Vc3S01_0569 PF02817 e3 binding domain Vc3S01_0569 PF00364 Biotin-requiring enzyme Vc3S01_0570 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_0570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Vc3S01_0571 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_0572 PF00156 Phosphoribosyl transferase domain Vc3S01_0573 PF00484 Carbonic anhydrase Vc3S01_0574 PF01740 STAS domain Vc3S01_0574 PF00916 Sulfate permease family Vc3S01_0575 PF00005 ABC transporter Vc3S01_0576 PF01061 ABC-2 type transporter Vc3S01_0577 PF03279 Bacterial lipid A biosynthesis acyltransferase Vc3S01_0578 PF02569 Pantoate-beta-alanine ligase Vc3S01_0579 PF02548 Ketopantoate hydroxymethyltransferase Vc3S01_0580 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Vc3S01_0581 PF01743 Poly A polymerase head domain Vc3S01_0581 PF12626 Polymerase A arginine-rich C-terminus Vc3S01_0581 PF12627 Probable RNA and SrmB- binding site of polymerase A Vc3S01_0582 PF00749 tRNA synthetases class I (E and Q), catalytic domain Vc3S01_0583 PF01258 Prokaryotic dksA/traR C4-type zinc finger Vc3S01_0584 PF17746 SfsA N-terminal OB domain Vc3S01_0584 PF03749 Sugar fermentation stimulation protein RE domain Vc3S01_0585 PF08482 ATP-dependent helicase C-terminal Vc3S01_0585 PF00270 DEAD/DEAH box helicase Vc3S01_0585 PF04408 Helicase associated domain (HA2) Vc3S01_0585 PF00271 Helicase conserved C-terminal domain Vc3S01_0586 PF00905 Penicillin binding protein transpeptidase domain Vc3S01_0586 PF14814 Bifunctional transglycosylase second domain Vc3S01_0586 PF00912 Transglycosylase Vc3S01_0587 PF01734 Patatin-like phospholipase Vc3S01_0588 PF11791 Aconitate B N-terminal domain Vc3S01_0588 PF06434 Aconitate hydratase 2 N-terminus Vc3S01_0588 PF00330 Aconitase family (aconitate hydratase) Vc3S01_0589 PF06062 Uncharacterised protein family (UPF0231) Vc3S01_0590 PF00543 Nitrogen regulatory protein P-II Vc3S01_0591 PF00909 Ammonium Transporter Family Vc3S01_0592 PF13416 Bacterial extracellular solute-binding protein Vc3S01_0594 PF08402 TOBE domain Vc3S01_0594 PF00005 ABC transporter Vc3S01_0595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Vc3S01_0595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Vc3S01_0595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Vc3S01_0595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Vc3S01_0596 PF06165 Glycosyltransferase family 36 Vc3S01_0596 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Vc3S01_0597 PF00728 Glycosyl hydrolase family 20, catalytic domain Vc3S01_0597 PF02838 Glycosyl hydrolase family 20, domain 2 Vc3S01_0598 PF01869 BadF/BadG/BcrA/BcrD ATPase family Vc3S01_0600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_0600 PF00005 ABC transporter Vc3S01_0601 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_0601 PF00005 ABC transporter Vc3S01_0602 PF12911 N-terminal TM domain of oligopeptide transport permease C Vc3S01_0602 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_0603 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_0604 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_0605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_0605 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_0605 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_0605 PF00072 Response regulator receiver domain Vc3S01_0606 PF05175 Methyltransferase small domain Vc3S01_0606 PF08468 Methyltransferase small domain N-terminal Vc3S01_0607 PF01594 AI-2E family transporter Vc3S01_0609 PF00202 Aminotransferase class-III Vc3S01_0611 PF01521 Iron-sulphur cluster biosynthesis Vc3S01_0612 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_0613 PF00873 AcrB/AcrD/AcrF family Vc3S01_0614 PF01551 Peptidase family M23 Vc3S01_0614 PF08525 Opacity-associated protein A N-terminal motif Vc3S01_0614 PF01476 LysM domain Vc3S01_0615 PF00579 tRNA synthetases class I (W and Y) Vc3S01_0618 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Vc3S01_0619 PF13609 Gram-negative porin Vc3S01_0621 PF03449 Transcription elongation factor, N-terminal Vc3S01_0621 PF01272 Transcription elongation factor, GreA/GreB, C-term Vc3S01_0622 PF01985 CRS1 / YhbY (CRM) domain Vc3S01_0623 PF01728 FtsJ-like methyltransferase Vc3S01_0624 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_0624 PF17862 AAA+ lid domain Vc3S01_0624 PF06480 FtsH Extracellular Vc3S01_0624 PF01434 Peptidase family M41 Vc3S01_0625 PF00809 Pterin binding enzyme Vc3S01_0626 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Vc3S01_0626 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Vc3S01_0626 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Vc3S01_0626 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Vc3S01_0627 PF03840 Preprotein translocase SecG subunit Vc3S01_0628 PF17384 RimP C-terminal SH3 domain Vc3S01_0628 PF02576 RimP N-terminal domain Vc3S01_0629 PF00575 S1 RNA binding domain Vc3S01_0629 PF08529 NusA N-terminal domain Vc3S01_0629 PF13184 NusA-like KH domain Vc3S01_0630 PF00009 Elongation factor Tu GTP binding domain Vc3S01_0630 PF11987 Translation-initiation factor 2 Vc3S01_0630 PF08364 Bacterial translation initiation factor IF-2 associated region Vc3S01_0630 PF04760 Translation initiation factor IF-2, N-terminal region Vc3S01_0631 PF02033 Ribosome-binding factor A Vc3S01_0632 PF01509 TruB family pseudouridylate synthase (N terminal domain) Vc3S01_0632 PF09157 Pseudouridine synthase II TruB, C-terminal Vc3S01_0632 PF16198 tRNA pseudouridylate synthase B C-terminal domain Vc3S01_0633 PF00312 Ribosomal protein S15 Vc3S01_0634 PF03725 3' exoribonuclease family, domain 2 Vc3S01_0634 PF00013 KH domain Vc3S01_0634 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Vc3S01_0634 PF01138 3' exoribonuclease family, domain 1 Vc3S01_0634 PF00575 S1 RNA binding domain Vc3S01_0635 PF07719 Tetratricopeptide repeat Vc3S01_0635 PF13181 Tetratricopeptide repeat Vc3S01_0637 PF01554 MatE Vc3S01_0640 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_0640 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_0640 PF00563 EAL domain Vc3S01_0642 PF13508 Acetyltransferase (GNAT) domain Vc3S01_0646 PF05230 MASE2 domain Vc3S01_0646 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_0647 PF16658 Class II release factor RF3, C-terminal domain Vc3S01_0647 PF03144 Elongation factor Tu domain 2 Vc3S01_0647 PF00009 Elongation factor Tu GTP binding domain Vc3S01_0649 PF01026 TatD related DNase Vc3S01_0650 PF07670 Nucleoside recognition Vc3S01_0650 PF07662 Na+ dependent nucleoside transporter C-terminus Vc3S01_0650 PF01773 Na+ dependent nucleoside transporter N-terminus Vc3S01_0651 PF01791 DeoC/LacD family aldolase Vc3S01_0652 PF02885 Glycosyl transferase family, helical bundle domain Vc3S01_0652 PF00591 Glycosyl transferase family, a/b domain Vc3S01_0652 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Vc3S01_0653 PF01676 Metalloenzyme superfamily Vc3S01_0654 PF01048 Phosphorylase superfamily Vc3S01_0656 PF18429 Domain of unknown function (DUF5609) Vc3S01_0658 PF18073 Rubredoxin metal binding domain Vc3S01_0659 PF03144 Elongation factor Tu domain 2 Vc3S01_0659 PF00009 Elongation factor Tu GTP binding domain Vc3S01_0659 PF03764 Elongation factor G, domain IV Vc3S01_0659 PF14492 Elongation Factor G, domain II Vc3S01_0659 PF00679 Elongation factor G C-terminus Vc3S01_0660 PF03466 LysR substrate binding domain Vc3S01_0660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_0667 PF00501 AMP-binding enzyme Vc3S01_0668 PF12833 Helix-turn-helix domain Vc3S01_0668 PF02805 Metal binding domain of Ada Vc3S01_0673 PF04972 BON domain Vc3S01_0673 PF00263 Bacterial type II and III secretion system protein Vc3S01_0673 PF13629 Pilus formation protein N terminal region Vc3S01_0679 PF00437 Type II/IV secretion system protein Vc3S01_0685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_0685 PF03466 LysR substrate binding domain Vc3S01_0686 PF01204 Trehalase Vc3S01_0688 PF13520 Amino acid permease Vc3S01_0689 PF04074 YhcH/YjgK/YiaL Vc3S01_0690 PF02837 Glycosyl hydrolases family 2, sugar binding domain Vc3S01_0690 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Vc3S01_0690 PF00703 Glycosyl hydrolases family 2 Vc3S01_0690 PF16353 Domain of unknown function(DUF4981) Vc3S01_0690 PF02929 Beta galactosidase small chain Vc3S01_0691 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_0692 PF03717 Penicillin-binding Protein dimerisation domain Vc3S01_0692 PF00905 Penicillin binding protein transpeptidase domain Vc3S01_0694 PF16363 GDP-mannose 4,6 dehydratase Vc3S01_0695 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Vc3S01_0695 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Vc3S01_0696 PF00288 GHMP kinases N terminal domain Vc3S01_0696 PF08544 GHMP kinases C terminal Vc3S01_0696 PF10509 Galactokinase galactose-binding signature Vc3S01_0697 PF01263 Aldose 1-epimerase Vc3S01_0698 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_0699 PF00367 phosphotransferase system, EIIB Vc3S01_0699 PF02378 Phosphotransferase system, EIIC Vc3S01_0702 PF01588 Putative tRNA binding domain Vc3S01_0706 PF01464 Transglycosylase SLT domain Vc3S01_0706 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Vc3S01_0707 PF01464 Transglycosylase SLT domain Vc3S01_0707 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Vc3S01_0708 PF01266 FAD dependent oxidoreductase Vc3S01_0708 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Vc3S01_0709 PF08220 DeoR-like helix-turn-helix domain Vc3S01_0709 PF00455 DeoR C terminal sensor domain Vc3S01_0710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Vc3S01_0710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Vc3S01_0711 PF00230 Major intrinsic protein Vc3S01_0712 PF07690 Major Facilitator Superfamily Vc3S01_0713 PF03009 Glycerophosphoryl diester phosphodiesterase family Vc3S01_0716 PF14602 Hexapeptide repeat of succinyl-transferase Vc3S01_0716 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle Vc3S01_0719 PF07130 YebG protein Vc3S01_0722 PF11893 Domain of unknown function (DUF3413) Vc3S01_0722 PF00884 Sulfatase Vc3S01_0723 PF17946 RecC C-terminal domain Vc3S01_0724 PF12705 PD-(D/E)XK nuclease superfamily Vc3S01_0724 PF00580 UvrD/REP helicase N-terminal domain Vc3S01_0724 PF13361 UvrD-like helicase C-terminal domain Vc3S01_0725 PF13538 UvrD-like helicase C-terminal domain Vc3S01_0728 PF00583 Acetyltransferase (GNAT) family Vc3S01_0728 PF00696 Amino acid kinase family Vc3S01_0731 PF03562 MltA specific insert domain Vc3S01_0731 PF06725 3D domain Vc3S01_0732 PF00899 ThiF family Vc3S01_0733 PF02657 Fe-S metabolism associated domain Vc3S01_0734 PF00266 Aminotransferase class-V Vc3S01_0735 PF01965 DJ-1/PfpI family Vc3S01_0736 PF08546 Ketopantoate reductase PanE/ApbA C terminal Vc3S01_0736 PF02558 Ketopantoate reductase PanE/ApbA Vc3S01_0737 PF03502 Nucleoside-specific channel-forming protein, Tsx Vc3S01_0740 PF04545 Sigma-70, region 4 Vc3S01_0740 PF04542 Sigma-70 region 2 Vc3S01_0742 PF07690 Major Facilitator Superfamily Vc3S01_0743 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Vc3S01_0745 PF05175 Methyltransferase small domain Vc3S01_0746 PF01722 BolA-like protein Vc3S01_0747 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) Vc3S01_0747 PF11973 NQRA C-terminal domain Vc3S01_0748 PF03116 NQR2, RnfD, RnfE family Vc3S01_0749 PF04205 FMN-binding domain Vc3S01_0750 PF02508 Rnf-Nqr subunit, membrane protein Vc3S01_0751 PF02508 Rnf-Nqr subunit, membrane protein Vc3S01_0752 PF00111 2Fe-2S iron-sulfur cluster binding domain Vc3S01_0752 PF00175 Oxidoreductase NAD-binding domain Vc3S01_0752 PF00970 Oxidoreductase FAD-binding domain Vc3S01_0753 PF02424 ApbE family Vc3S01_0755 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_0755 PF00072 Response regulator receiver domain Vc3S01_0756 PF00817 impB/mucB/samB family Vc3S01_0756 PF11799 impB/mucB/samB family C-terminal domain Vc3S01_0756 PF11798 IMS family HHH motif Vc3S01_0757 PF00270 DEAD/DEAH box helicase Vc3S01_0757 PF00271 Helicase conserved C-terminal domain Vc3S01_0757 PF09382 RQC domain Vc3S01_0757 PF00570 HRDC domain Vc3S01_0757 PF16124 RecQ zinc-binding Vc3S01_0758 PF03449 Transcription elongation factor, N-terminal Vc3S01_0758 PF01272 Transcription elongation factor, GreA/GreB, C-term Vc3S01_0760 PF00041 Fibronectin type III domain Vc3S01_0760 PF00704 Glycosyl hydrolases family 18 Vc3S01_0761 PF00209 Sodium:neurotransmitter symporter family Vc3S01_0763 PF06786 Uncharacterised protein family (UPF0253) Vc3S01_0765 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Vc3S01_0765 PF03129 Anticodon binding domain Vc3S01_0765 PF04073 Aminoacyl-tRNA editing domain Vc3S01_0766 PF18389 TrmO C-terminal domain Vc3S01_0766 PF01980 tRNA-methyltransferase O Vc3S01_0767 PF01197 Ribosomal protein L31 Vc3S01_0768 PF00444 Ribosomal protein L36 Vc3S01_0769 PF03806 AbgT putative transporter family Vc3S01_0770 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Vc3S01_0775 PF04287 tRNA pseudouridine synthase C Vc3S01_0776 PF00849 RNA pseudouridylate synthase Vc3S01_0777 PF11944 Protein of unknown function (DUF3461) Vc3S01_0778 PF01909 Nucleotidyltransferase domain Vc3S01_0778 PF01966 HD domain Vc3S01_0778 PF08335 GlnD PII-uridylyltransferase Vc3S01_0778 PF01842 ACT domain Vc3S01_0779 PF00557 Metallopeptidase family M24 Vc3S01_0780 PF00318 Ribosomal protein S2 Vc3S01_0781 PF00889 Elongation factor TS Vc3S01_0782 PF00696 Amino acid kinase family Vc3S01_0783 PF01765 Ribosome recycling factor Vc3S01_0784 PF01255 Putative undecaprenyl diphosphate synthase Vc3S01_0786 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Vc3S01_0786 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Vc3S01_0786 PF13288 DXP reductoisomerase C-terminal domain Vc3S01_0787 PF17820 PDZ domain Vc3S01_0787 PF02163 Peptidase family M50 Vc3S01_0788 PF07244 Surface antigen variable number repeat Vc3S01_0788 PF01103 Surface antigen Vc3S01_0789 PF03938 Outer membrane protein (OmpH-like) Vc3S01_0790 PF00132 Bacterial transferase hexapeptide (six repeats) Vc3S01_0790 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Vc3S01_0791 PF07977 FabA-like domain Vc3S01_0792 PF00132 Bacterial transferase hexapeptide (six repeats) Vc3S01_0792 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Vc3S01_0793 PF02684 Lipid-A-disaccharide synthetase Vc3S01_0794 PF01351 Ribonuclease HII Vc3S01_0795 PF07733 Bacterial DNA polymerase III alpha NTPase domain Vc3S01_0795 PF14579 Helix-hairpin-helix motif Vc3S01_0795 PF02811 PHP domain Vc3S01_0795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Vc3S01_0795 PF01336 OB-fold nucleic acid binding domain Vc3S01_0796 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Vc3S01_0797 PF09179 TilS substrate binding domain Vc3S01_0797 PF01171 PP-loop family Vc3S01_0797 PF11734 TilS substrate C-terminal domain Vc3S01_0798 PF00034 Cytochrome c Vc3S01_0799 PF00543 Nitrogen regulatory protein P-II Vc3S01_0802 PF01464 Transglycosylase SLT domain Vc3S01_0802 PF01476 LysM domain Vc3S01_0803 PF16123 Hydroxyacylglutathione hydrolase C-terminus Vc3S01_0804 PF08241 Methyltransferase domain Vc3S01_0805 PF00075 RNase H Vc3S01_0806 PF00929 Exonuclease Vc3S01_0811 PF02770 Acyl-CoA dehydrogenase, middle domain Vc3S01_0811 PF09317 Domain of unknown function (DUF1974) Vc3S01_0811 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Vc3S01_0811 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Vc3S01_0812 PF13580 SIS domain Vc3S01_0813 PF13230 Glutamine amidotransferases class-II Vc3S01_0814 PF00551 Formyl transferase Vc3S01_0815 PF00586 AIR synthase related protein, N-terminal domain Vc3S01_0815 PF02769 AIR synthase related protein, C-terminal domain Vc3S01_0817 PF00860 Permease family Vc3S01_0820 PF03358 NADPH-dependent FMN reductase Vc3S01_0821 PF03960 ArsC family Vc3S01_0822 PF13181 Tetratricopeptide repeat Vc3S01_0822 PF01435 Peptidase family M48 Vc3S01_0824 PF01594 AI-2E family transporter Vc3S01_0825 PF00578 AhpC/TSA family Vc3S01_0826 PF01842 ACT domain Vc3S01_0827 PF00701 Dihydrodipicolinate synthetase family Vc3S01_0831 PF07687 Peptidase dimerisation domain Vc3S01_0831 PF01546 Peptidase family M20/M25/M40 Vc3S01_0832 PF03960 ArsC family Vc3S01_0836 PF11143 Protein of unknown function (DUF2919) Vc3S01_0837 PF04261 Dyp-type peroxidase family Vc3S01_0838 PF12833 Helix-turn-helix domain Vc3S01_0839 PF11975 Family 4 glycosyl hydrolase C-terminal domain Vc3S01_0839 PF02056 Family 4 glycosyl hydrolase Vc3S01_0842 PF07196 Flagellin hook IN motif Vc3S01_0842 PF00700 Bacterial flagellin C-terminal helical region Vc3S01_0842 PF00669 Bacterial flagellin N-terminal helical region Vc3S01_0843 PF00669 Bacterial flagellin N-terminal helical region Vc3S01_0843 PF00700 Bacterial flagellin C-terminal helical region Vc3S01_0843 PF07196 Flagellin hook IN motif Vc3S01_0844 PF00669 Bacterial flagellin N-terminal helical region Vc3S01_0844 PF00700 Bacterial flagellin C-terminal helical region Vc3S01_0844 PF07196 Flagellin hook IN motif Vc3S01_0845 PF03646 FlaG protein Vc3S01_0846 PF02465 Flagellar hook-associated protein 2 N-terminus Vc3S01_0846 PF07196 Flagellin hook IN motif Vc3S01_0846 PF07195 Flagellar hook-associated protein 2 C-terminus Vc3S01_0848 PF02561 Flagellar protein FliS Vc3S01_0849 PF02954 Bacterial regulatory protein, Fis family Vc3S01_0849 PF00072 Response regulator receiver domain Vc3S01_0849 PF00158 Sigma-54 interaction domain Vc3S01_0850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_0850 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_0851 PF00072 Response regulator receiver domain Vc3S01_0851 PF02954 Bacterial regulatory protein, Fis family Vc3S01_0851 PF00158 Sigma-54 interaction domain Vc3S01_0852 PF02049 Flagellar hook-basal body complex protein FliE Vc3S01_0853 PF01514 Secretory protein of YscJ/FliF family Vc3S01_0853 PF08345 Flagellar M-ring protein C-terminal Vc3S01_0854 PF14841 FliG middle domain Vc3S01_0854 PF14842 FliG N-terminal domain Vc3S01_0854 PF01706 FliG C-terminal domain Vc3S01_0856 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Vc3S01_0856 PF18269 T3SS EscN ATPase C-terminal domain Vc3S01_0861 PF02154 Flagellar motor switch protein FliM Vc3S01_0861 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Vc3S01_0862 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Vc3S01_0863 PF04347 Flagellar biosynthesis protein, FliO Vc3S01_0864 PF00813 FliP family Vc3S01_0865 PF01313 Bacterial export proteins, family 3 Vc3S01_0866 PF01311 Bacterial export proteins, family 1 Vc3S01_0867 PF01312 FlhB HrpN YscU SpaS Family Vc3S01_0868 PF00771 FHIPEP family Vc3S01_0869 PF00448 SRP54-type protein, GTPase domain Vc3S01_0870 PF10609 NUBPL iron-transfer P-loop NTPase Vc3S01_0871 PF04545 Sigma-70, region 4 Vc3S01_0871 PF04539 Sigma-70 region 3 Vc3S01_0871 PF04542 Sigma-70 region 2 Vc3S01_0872 PF00072 Response regulator receiver domain Vc3S01_0873 PF04344 Chemotaxis phosphatase, CheZ Vc3S01_0874 PF01584 CheW-like domain Vc3S01_0874 PF07194 P2 response regulator binding domain Vc3S01_0874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_0874 PF01627 Hpt domain Vc3S01_0874 PF02895 Signal transducing histidine kinase, homodimeric domain Vc3S01_0875 PF01339 CheB methylesterase Vc3S01_0875 PF00072 Response regulator receiver domain Vc3S01_0876 PF13614 AAA domain Vc3S01_0878 PF01584 CheW-like domain Vc3S01_0880 PF00005 ABC transporter Vc3S01_0881 PF03379 CcmB protein Vc3S01_0882 PF01578 Cytochrome C assembly protein Vc3S01_0884 PF03100 CcmE Vc3S01_0885 PF01578 Cytochrome C assembly protein Vc3S01_0885 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Vc3S01_0886 PF08534 Redoxin Vc3S01_0887 PF03918 Cytochrome C biogenesis protein Vc3S01_0888 PF03918 Cytochrome C biogenesis protein Vc3S01_0889 PF04333 MlaA lipoprotein Vc3S01_0890 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Vc3S01_0891 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Vc3S01_0893 PF08281 Sigma-70, region 4 Vc3S01_0893 PF04542 Sigma-70 region 2 Vc3S01_0894 PF02803 Thiolase, C-terminal domain Vc3S01_0894 PF00108 Thiolase, N-terminal domain Vc3S01_0895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Vc3S01_0895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Vc3S01_0895 PF00378 Enoyl-CoA hydratase/isomerase Vc3S01_0897 PF05193 Peptidase M16 inactive domain Vc3S01_0897 PF16187 Middle or third domain of peptidase_M16 Vc3S01_0897 PF00675 Insulinase (Peptidase family M16) Vc3S01_0898 PF00300 Histidine phosphatase superfamily (branch 1) Vc3S01_0899 PF01713 Smr domain Vc3S01_0900 PF05175 Methyltransferase small domain Vc3S01_0902 PF01264 Chorismate synthase Vc3S01_0903 PF03458 UPF0126 domain Vc3S01_0904 PF04315 Elongation factor P hydroxylase Vc3S01_0905 PF08891 YfcL protein Vc3S01_0908 PF01266 FAD dependent oxidoreductase Vc3S01_0908 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Vc3S01_0909 PF00109 Beta-ketoacyl synthase, N-terminal domain Vc3S01_0909 PF02801 Beta-ketoacyl synthase, C-terminal domain Vc3S01_0911 PF11890 Domain of unknown function (DUF3410) Vc3S01_0911 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Vc3S01_0911 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Vc3S01_0912 PF01118 Semialdehyde dehydrogenase, NAD binding domain Vc3S01_0912 PF02774 Semialdehyde dehydrogenase, dimerisation domain Vc3S01_0914 PF01416 tRNA pseudouridine synthase Vc3S01_0915 PF01039 Carboxyl transferase domain Vc3S01_0915 PF17848 Acetyl-coA carboxylase zinc finger domain Vc3S01_0916 PF02875 Mur ligase family, glutamate ligase domain Vc3S01_0916 PF08245 Mur ligase middle domain Vc3S01_0917 PF05036 Sporulation related domain Vc3S01_0918 PF02674 Colicin V production protein Vc3S01_0919 PF00156 Phosphoribosyl transferase domain Vc3S01_0920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_0920 PF03466 LysR substrate binding domain Vc3S01_0921 PF00072 Response regulator receiver domain Vc3S01_0923 PF04304 Protein of unknown function (DUF454) Vc3S01_0924 PF00156 Phosphoribosyl transferase domain Vc3S01_0925 PF12169 DNA polymerase III subunits gamma and tau domain III Vc3S01_0925 PF12170 DNA polymerase III tau subunit V interacting with alpha Vc3S01_0926 PF02575 YbaB/EbfC DNA-binding family Vc3S01_0927 PF02132 RecR protein Vc3S01_0927 PF13662 Toprim domain Vc3S01_0928 PF00230 Major intrinsic protein Vc3S01_0930 PF01042 Endoribonuclease L-PSP Vc3S01_0931 PF03313 Serine dehydratase alpha chain Vc3S01_0932 PF08348 YheO-like PAS domain Vc3S01_0932 PF13309 HTH domain Vc3S01_0933 PF03692 Putative zinc- or iron-chelating domain Vc3S01_0934 PF03692 Putative zinc- or iron-chelating domain Vc3S01_0935 PF04226 Transglycosylase associated protein Vc3S01_0936 PF06826 Predicted Permease Membrane Region Vc3S01_0937 PF00282 Pyridoxal-dependent decarboxylase conserved domain Vc3S01_0938 PF05552 Conserved TM helix Vc3S01_0938 PF00924 Mechanosensitive ion channel Vc3S01_0940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_0942 PF00245 Alkaline phosphatase Vc3S01_0943 PF02028 BCCT, betaine/carnitine/choline family transporter Vc3S01_0946 PF13847 Methyltransferase domain Vc3S01_0947 PF01156 Inosine-uridine preferring nucleoside hydrolase Vc3S01_0949 PF01263 Aldose 1-epimerase Vc3S01_0950 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Vc3S01_0950 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Vc3S01_0951 PF01641 SelR domain Vc3S01_0953 PF07023 Protein of unknown function (DUF1315) Vc3S01_0954 PF17763 Glutaminase/Asparaginase C-terminal domain Vc3S01_0954 PF00710 Asparaginase, N-terminal Vc3S01_0955 PF01343 Peptidase family S49 Vc3S01_0956 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Vc3S01_0956 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_0957 PF00881 Nitroreductase family Vc3S01_0958 PF01751 Toprim domain Vc3S01_0958 PF01131 DNA topoisomerase Vc3S01_0960 PF00106 short chain dehydrogenase Vc3S01_0962 PF00850 Histone deacetylase domain Vc3S01_0964 PF05987 Bacterial protein of unknown function (DUF898) Vc3S01_0966 PF11893 Domain of unknown function (DUF3413) Vc3S01_0966 PF00884 Sulfatase Vc3S01_0967 PF07208 Protein of unknown function (DUF1414) Vc3S01_0968 PF04245 37-kD nucleoid-associated bacterial protein Vc3S01_0971 PF03553 Na+/H+ antiporter family Vc3S01_0972 PF01118 Semialdehyde dehydrogenase, NAD binding domain Vc3S01_0972 PF02774 Semialdehyde dehydrogenase, dimerisation domain Vc3S01_0973 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_0973 PF00114 Pilin (bacterial filament) Vc3S01_0974 PF00520 Ion transport protein Vc3S01_0974 PF00027 Cyclic nucleotide-binding domain Vc3S01_0975 PF01914 MarC family integral membrane protein Vc3S01_0976 PF00171 Aldehyde dehydrogenase family Vc3S01_0976 PF00465 Iron-containing alcohol dehydrogenase Vc3S01_0979 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Vc3S01_0979 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Vc3S01_0980 PF00462 Glutaredoxin Vc3S01_0981 PF00589 Phage integrase family Vc3S01_0981 PF02899 Phage integrase, N-terminal SAM-like domain Vc3S01_0985 PF01844 HNH endonuclease Vc3S01_0991 PF01389 OmpA-like transmembrane domain Vc3S01_0991 PF00691 OmpA family Vc3S01_0993 PF00691 OmpA family Vc3S01_0993 PF01389 OmpA-like transmembrane domain Vc3S01_1006 PF03432 Relaxase/Mobilisation nuclease domain Vc3S01_1006 PF18821 Large polyvalent protein-associated domain 7 Vc3S01_1012 PF02534 Type IV secretory system Conjugative DNA transfer Vc3S01_1013 PF00437 Type II/IV secretion system protein Vc3S01_1015 PF03743 Bacterial conjugation TrbI-like protein Vc3S01_1016 PF03524 Conjugal transfer protein Vc3S01_1017 PF04335 VirB8 protein Vc3S01_1022 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Vc3S01_1029 PF03553 Na+/H+ antiporter family Vc3S01_1029 PF13726 Na+-H+ antiporter family Vc3S01_1030 PF00929 Exonuclease Vc3S01_1031 PF18393 MotY N-terminal domain Vc3S01_1031 PF00691 OmpA family Vc3S01_1032 PF10952 Protein of unknown function (DUF2753) Vc3S01_1033 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_1034 PF00730 HhH-GPD superfamily base excision DNA repair protein Vc3S01_1034 PF00633 Helix-hairpin-helix motif Vc3S01_1034 PF10576 Iron-sulfur binding domain of endonuclease III Vc3S01_1035 PF02508 Rnf-Nqr subunit, membrane protein Vc3S01_1036 PF04205 FMN-binding domain Vc3S01_1037 PF03116 NQR2, RnfD, RnfE family Vc3S01_1038 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Vc3S01_1038 PF10531 SLBB domain Vc3S01_1038 PF13375 RnfC Barrel sandwich hybrid domain Vc3S01_1038 PF12838 4Fe-4S dicluster domain Vc3S01_1039 PF04060 Putative Fe-S cluster Vc3S01_1040 PF02508 Rnf-Nqr subunit, membrane protein Vc3S01_1041 PF02901 Pyruvate formate lyase-like Vc3S01_1041 PF01228 Glycine radical Vc3S01_1042 PF00072 Response regulator receiver domain Vc3S01_1042 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_1044 PF03372 Endonuclease/Exonuclease/phosphatase family Vc3S01_1047 PF00271 Helicase conserved C-terminal domain Vc3S01_1047 PF12344 Ultra-violet resistance protein B Vc3S01_1047 PF02151 UvrB/uvrC motif Vc3S01_1047 PF04851 Type III restriction enzyme, res subunit Vc3S01_1047 PF17757 UvrB interaction domain Vc3S01_1048 PF00072 Response regulator receiver domain Vc3S01_1048 PF02954 Bacterial regulatory protein, Fis family Vc3S01_1048 PF00158 Sigma-54 interaction domain Vc3S01_1049 PF01627 Hpt domain Vc3S01_1050 PF01933 Uncharacterised protein family UPF0052 Vc3S01_1051 PF06463 Molybdenum Cofactor Synthesis C Vc3S01_1051 PF04055 Radical SAM superfamily Vc3S01_1052 PF00994 Probable molybdopterin binding domain Vc3S01_1053 PF01967 MoaC family Vc3S01_1054 PF02597 ThiS family Vc3S01_1055 PF02391 MoaE protein Vc3S01_1056 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_1057 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1058 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1058 PF12911 N-terminal TM domain of oligopeptide transport permease C Vc3S01_1059 PF00005 ABC transporter Vc3S01_1059 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_1060 PF00005 ABC transporter Vc3S01_1060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_1061 PF13409 Glutathione S-transferase, N-terminal domain Vc3S01_1062 PF13194 Domain of unknown function (DUF4010) Vc3S01_1063 PF07085 DRTGG domain Vc3S01_1063 PF01515 Phosphate acetyl/butaryl transferase Vc3S01_1064 PF00871 Acetokinase family Vc3S01_1065 PF04217 Protein of unknown function, DUF412 Vc3S01_1067 PF02653 Branched-chain amino acid transport system / permease component Vc3S01_1068 PF00005 ABC transporter Vc3S01_1069 PF00128 Alpha amylase, catalytic domain Vc3S01_1069 PF02903 Alpha amylase, N-terminal ig-like domain Vc3S01_1070 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1070 PF00072 Response regulator receiver domain Vc3S01_1071 PF01207 Dihydrouridine synthase (Dus) Vc3S01_1073 PF02810 SEC-C motif Vc3S01_1073 PF01043 SecA preprotein cross-linking domain Vc3S01_1073 PF07516 SecA Wing and Scaffold domain Vc3S01_1073 PF07517 SecA DEAD-like domain Vc3S01_1074 PF02600 Disulfide bond formation protein DsbB Vc3S01_1075 PF06450 Bacterial Na+/H+ antiporter B (NhaB) Vc3S01_1076 PF07840 FadR C-terminal domain Vc3S01_1076 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_1078 PF01588 Putative tRNA binding domain Vc3S01_1078 PF09334 tRNA synthetases class I (M) Vc3S01_1079 PF10609 NUBPL iron-transfer P-loop NTPase Vc3S01_1080 PF00485 Phosphoribulokinase / Uridine kinase family Vc3S01_1082 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Vc3S01_1082 PF12557 Cob(I)alamin adenosyltransferase N terminal Vc3S01_1083 PF01451 Low molecular weight phosphotyrosine protein phosphatase Vc3S01_1084 PF01740 STAS domain Vc3S01_1084 PF00916 Sulfate permease family Vc3S01_1085 PF12111 Polyribonucleotide phosphorylase C terminal Vc3S01_1085 PF10150 Ribonuclease E/G family Vc3S01_1085 PF00575 S1 RNA binding domain Vc3S01_1087 PF01479 S4 domain Vc3S01_1087 PF00849 RNA pseudouridylate synthase Vc3S01_1088 PF02545 Maf-like protein Vc3S01_1089 PF02620 Large ribosomal RNA subunit accumulation protein YceD Vc3S01_1090 PF01783 Ribosomal L32p protein family Vc3S01_1091 PF02504 Fatty acid synthesis protein Vc3S01_1092 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Vc3S01_1092 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Vc3S01_1093 PF00698 Acyl transferase domain Vc3S01_1095 PF00550 Phosphopantetheine attachment site Vc3S01_1096 PF00109 Beta-ketoacyl synthase, N-terminal domain Vc3S01_1096 PF02801 Beta-ketoacyl synthase, C-terminal domain Vc3S01_1097 PF01063 Amino-transferase class IV Vc3S01_1098 PF02618 YceG-like family Vc3S01_1099 PF02223 Thymidylate kinase Vc3S01_1100 PF09115 DNA polymerase III, delta subunit, C terminal Vc3S01_1101 PF01026 TatD related DNase Vc3S01_1102 PF02378 Phosphotransferase system, EIIC Vc3S01_1102 PF00367 phosphotransferase system, EIIB Vc3S01_1104 PF00209 Sodium:neurotransmitter symporter family Vc3S01_1107 PF01734 Patatin-like phospholipase Vc3S01_1108 PF09134 Invasin, domain 3 Vc3S01_1108 PF02369 Bacterial Ig-like domain (group 1) Vc3S01_1108 PF11924 Inverse autotransporter, beta-domain Vc3S01_1108 PF07979 Intimin C-type lectin domain Vc3S01_1112 PF00135 Carboxylesterase family Vc3S01_1113 PF18500 CadC C-terminal domain 1 Vc3S01_1113 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_1115 PF02887 Pyruvate kinase, alpha/beta domain Vc3S01_1115 PF00224 Pyruvate kinase, barrel domain Vc3S01_1116 PF00480 ROK family Vc3S01_1117 PF00072 Response regulator receiver domain Vc3S01_1117 PF01584 CheW-like domain Vc3S01_1118 PF02811 PHP domain Vc3S01_1118 PF07733 Bacterial DNA polymerase III alpha NTPase domain Vc3S01_1118 PF14579 Helix-hairpin-helix motif Vc3S01_1118 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Vc3S01_1118 PF01336 OB-fold nucleic acid binding domain Vc3S01_1121 PF00106 short chain dehydrogenase Vc3S01_1123 PF01343 Peptidase family S49 Vc3S01_1123 PF08496 Peptidase family S49 N-terminal Vc3S01_1125 PF02224 Cytidylate kinase Vc3S01_1126 PF00575 S1 RNA binding domain Vc3S01_1127 PF00216 Bacterial DNA-binding protein Vc3S01_1128 PF06305 Lipopolysaccharide assembly protein A domain Vc3S01_1129 PF18073 Rubredoxin metal binding domain Vc3S01_1130 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Vc3S01_1131 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_1135 PF03886 ABC-type transport auxiliary lipoprotein component Vc3S01_1136 PF02470 MlaD protein Vc3S01_1137 PF04403 Paraquat-inducible protein A Vc3S01_1138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1138 PF03466 LysR substrate binding domain Vc3S01_1140 PF02683 Cytochrome C biogenesis protein transmembrane region Vc3S01_1140 PF11412 Disulphide bond corrector protein DsbC Vc3S01_1141 PF00085 Thioredoxin Vc3S01_1143 PF05958 tRNA (Uracil-5-)-methyltransferase Vc3S01_1149 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_1151 PF02687 FtsX-like permease family Vc3S01_1151 PF12704 MacB-like periplasmic core domain Vc3S01_1152 PF00005 ABC transporter Vc3S01_1152 PF02687 FtsX-like permease family Vc3S01_1152 PF12704 MacB-like periplasmic core domain Vc3S01_1153 PF02687 FtsX-like permease family Vc3S01_1153 PF12704 MacB-like periplasmic core domain Vc3S01_1153 PF00005 ABC transporter Vc3S01_1154 PF03543 Yersinia/Haemophilus virulence surface antigen Vc3S01_1156 PF00929 Exonuclease Vc3S01_1156 PF02811 PHP domain Vc3S01_1156 PF11490 DNA polymerase III polC-type N-terminus II Vc3S01_1156 PF07733 Bacterial DNA polymerase III alpha NTPase domain Vc3S01_1156 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Vc3S01_1156 PF14579 Helix-hairpin-helix motif Vc3S01_1159 PF01717 Cobalamin-independent synthase, Catalytic domain Vc3S01_1159 PF08267 Cobalamin-independent synthase, N-terminal domain Vc3S01_1162 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_1162 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_1163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1163 PF03466 LysR substrate binding domain Vc3S01_1168 PF00069 Protein kinase domain Vc3S01_1169 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1169 PF00672 HAMP domain Vc3S01_1169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1170 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_1170 PF00072 Response regulator receiver domain Vc3S01_1171 PF00535 Glycosyl transferase family 2 Vc3S01_1172 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Vc3S01_1174 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_1174 PF00672 HAMP domain Vc3S01_1175 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Vc3S01_1177 PF13309 HTH domain Vc3S01_1177 PF08348 YheO-like PAS domain Vc3S01_1178 PF01042 Endoribonuclease L-PSP Vc3S01_1179 PF00375 Sodium:dicarboxylate symporter family Vc3S01_1180 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_1180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Vc3S01_1184 PF11842 Domain of unknown function (DUF3362) Vc3S01_1184 PF04055 Radical SAM superfamily Vc3S01_1184 PF08497 Radical SAM N-terminal Vc3S01_1185 PF00498 FHA domain Vc3S01_1185 PF00563 EAL domain Vc3S01_1185 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1188 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1188 PF03466 LysR substrate binding domain Vc3S01_1189 PF08267 Cobalamin-independent synthase, N-terminal domain Vc3S01_1189 PF01717 Cobalamin-independent synthase, Catalytic domain Vc3S01_1191 PF03795 YCII-related domain Vc3S01_1192 PF03061 Thioesterase superfamily Vc3S01_1193 PF04279 Intracellular septation protein A Vc3S01_1195 PF00072 Response regulator receiver domain Vc3S01_1195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1196 PF17327 Acyl homoserine lactone synthase Vc3S01_1197 PF00375 Sodium:dicarboxylate symporter family Vc3S01_1198 PF00290 Tryptophan synthase alpha chain Vc3S01_1199 PF00291 Pyridoxal-phosphate dependent enzyme Vc3S01_1200 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Vc3S01_1200 PF00218 Indole-3-glycerol phosphate synthase Vc3S01_1201 PF02885 Glycosyl transferase family, helical bundle domain Vc3S01_1201 PF00591 Glycosyl transferase family, a/b domain Vc3S01_1202 PF00117 Glutamine amidotransferase class-I Vc3S01_1203 PF00425 chorismate binding enzyme Vc3S01_1203 PF04715 Anthranilate synthase component I, N terminal region Vc3S01_1204 PF08056 Tryptophan operon leader peptide Vc3S01_1205 PF02811 PHP domain Vc3S01_1206 PF01300 Telomere recombination Vc3S01_1208 PF00849 RNA pseudouridylate synthase Vc3S01_1208 PF01479 S4 domain Vc3S01_1209 PF04269 Protein of unknown function, DUF440 Vc3S01_1210 PF08207 Elongation factor P (EF-P) KOW-like domain Vc3S01_1210 PF09285 Elongation factor P, C-terminal Vc3S01_1210 PF01132 Elongation factor P (EF-P) OB domain Vc3S01_1212 PF03104 DNA polymerase family B, exonuclease domain Vc3S01_1212 PF00136 DNA polymerase family B Vc3S01_1213 PF00072 Response regulator receiver domain Vc3S01_1213 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_1215 PF02151 UvrB/uvrC motif Vc3S01_1215 PF01541 GIY-YIG catalytic domain Vc3S01_1215 PF08459 UvrC Helix-hairpin-helix N-terminal Vc3S01_1216 PF01066 CDP-alcohol phosphatidyltransferase Vc3S01_1217 PF00202 Aminotransferase class-III Vc3S01_1218 PF16653 Saccharopine dehydrogenase C-terminal domain Vc3S01_1218 PF03435 Saccharopine dehydrogenase NADP binding domain Vc3S01_1219 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Vc3S01_1222 PF02464 Competence-damaged protein Vc3S01_1222 PF00994 Probable molybdopterin binding domain Vc3S01_1224 PF00268 Ribonucleotide reductase, small chain Vc3S01_1225 PF03477 ATP cone domain Vc3S01_1225 PF00317 Ribonucleotide reductase, all-alpha domain Vc3S01_1225 PF02867 Ribonucleotide reductase, barrel domain Vc3S01_1227 PF03989 DNA gyrase C-terminal domain, beta-propeller Vc3S01_1227 PF00521 DNA gyrase/topoisomerase IV, subunit A Vc3S01_1230 PF02335 Cytochrome c552 Vc3S01_1232 PF13247 4Fe-4S dicluster domain Vc3S01_1233 PF03916 Polysulphide reductase, NrfD Vc3S01_1234 PF01578 Cytochrome C assembly protein Vc3S01_1234 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Vc3S01_1235 PF08534 Redoxin Vc3S01_1236 PF03918 Cytochrome C biogenesis protein Vc3S01_1238 PF00925 GTP cyclohydrolase II Vc3S01_1243 PF03734 L,D-transpeptidase catalytic domain Vc3S01_1243 PF01471 Putative peptidoglycan binding domain Vc3S01_1244 PF05951 Bacterial protein of unknown function (DUF882) Vc3S01_1245 PF00753 Metallo-beta-lactamase superfamily Vc3S01_1248 PF03480 Bacterial extracellular solute-binding protein, family 7 Vc3S01_1250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Vc3S01_1251 PF17200 Single Cache domain 2 Vc3S01_1251 PF07730 Histidine kinase Vc3S01_1252 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_1252 PF00072 Response regulator receiver domain Vc3S01_1253 PF01047 MarR family Vc3S01_1254 PF02028 BCCT, betaine/carnitine/choline family transporter Vc3S01_1255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_1255 PF00672 HAMP domain Vc3S01_1260 PF00155 Aminotransferase class I and II Vc3S01_1261 PF01966 HD domain Vc3S01_1261 PF00672 HAMP domain Vc3S01_1264 PF00155 Aminotransferase class I and II Vc3S01_1264 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_1267 PF01336 OB-fold nucleic acid binding domain Vc3S01_1267 PF00152 tRNA synthetases class II (D, K and N) Vc3S01_1268 PF00672 HAMP domain Vc3S01_1268 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_1269 PF01242 6-pyruvoyl tetrahydropterin synthase Vc3S01_1270 PF00072 Response regulator receiver domain Vc3S01_1270 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_1273 PF00563 EAL domain Vc3S01_1273 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1273 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_1274 PF03315 Serine dehydratase beta chain Vc3S01_1274 PF03313 Serine dehydratase alpha chain Vc3S01_1275 PF03222 Tryptophan/tyrosine permease family Vc3S01_1276 PF00293 NUDIX domain Vc3S01_1278 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1278 PF09308 LuxQ, periplasmic Vc3S01_1278 PF00072 Response regulator receiver domain Vc3S01_1278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1279 PF00425 chorismate binding enzyme Vc3S01_1279 PF04715 Anthranilate synthase component I, N terminal region Vc3S01_1282 PF04317 YcjX-like family, DUF463 Vc3S01_1283 PF05128 Domain of unknown function (DUF697) Vc3S01_1284 PF00158 Sigma-54 interaction domain Vc3S01_1284 PF18024 Helix-turn-helix domain Vc3S01_1285 PF13302 Acetyltransferase (GNAT) domain Vc3S01_1288 PF00589 Phage integrase family Vc3S01_1288 PF13495 Phage integrase, N-terminal SAM-like domain Vc3S01_1304 PF13302 Acetyltransferase (GNAT) domain Vc3S01_1304 PF13673 Acetyltransferase (GNAT) domain Vc3S01_1304 PF03352 Methyladenine glycosylase Vc3S01_1304 PF00958 GMP synthase C terminal domain Vc3S01_1304 PF00117 Glutamine amidotransferase class-I Vc3S01_1310 PF00293 NUDIX domain Vc3S01_1339 PF01555 DNA methylase Vc3S01_1376 PF00293 NUDIX domain Vc3S01_1377 PF06271 RDD family Vc3S01_1380 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Vc3S01_1397 PF00106 short chain dehydrogenase Vc3S01_1400 PF03575 Peptidase family S51 Vc3S01_1404 PF00583 Acetyltransferase (GNAT) family Vc3S01_1405 PF00939 Sodium:sulfate symporter transmembrane region Vc3S01_1406 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_1406 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1407 PF00158 Sigma-54 interaction domain Vc3S01_1407 PF00072 Response regulator receiver domain Vc3S01_1407 PF02954 Bacterial regulatory protein, Fis family Vc3S01_1408 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_1408 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1408 PF00563 EAL domain Vc3S01_1409 PF01966 HD domain Vc3S01_1409 PF11871 Domain of unknown function (DUF3391) Vc3S01_1410 PF01810 LysE type translocator Vc3S01_1411 PF11230 Protein of unknown function (DUF3029) Vc3S01_1412 PF04055 Radical SAM superfamily Vc3S01_1413 PF03466 LysR substrate binding domain Vc3S01_1413 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1414 PF03741 Integral membrane protein TerC family Vc3S01_1416 PF01966 HD domain Vc3S01_1417 PF00106 short chain dehydrogenase Vc3S01_1418 PF00465 Iron-containing alcohol dehydrogenase Vc3S01_1419 PF03222 Tryptophan/tyrosine permease family Vc3S01_1424 PF00005 ABC transporter Vc3S01_1424 PF00664 ABC transporter transmembrane region Vc3S01_1425 PF00664 ABC transporter transmembrane region Vc3S01_1425 PF00005 ABC transporter Vc3S01_1427 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1427 PF03466 LysR substrate binding domain Vc3S01_1429 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Vc3S01_1429 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Vc3S01_1432 PF00012 Hsp70 protein Vc3S01_1433 PF00012 Hsp70 protein Vc3S01_1435 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1441 PF01447 Thermolysin metallopeptidase, catalytic domain Vc3S01_1441 PF04151 Bacterial pre-peptidase C-terminal domain Vc3S01_1441 PF07504 Fungalysin/Thermolysin Propeptide Motif Vc3S01_1441 PF02868 Thermolysin metallopeptidase, alpha-helical domain Vc3S01_1441 PF03413 Peptidase propeptide and YPEB domain Vc3S01_1445 PF00005 ABC transporter Vc3S01_1445 PF03459 TOBE domain Vc3S01_1445 PF17912 MalK OB fold domain Vc3S01_1446 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Vc3S01_1447 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_1448 PF13416 Bacterial extracellular solute-binding protein Vc3S01_1449 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1450 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1452 PF01915 Glycosyl hydrolase family 3 C-terminal domain Vc3S01_1452 PF00933 Glycosyl hydrolase family 3 N terminal domain Vc3S01_1452 PF14310 Fibronectin type III-like domain Vc3S01_1453 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_1453 PF00384 Molybdopterin oxidoreductase Vc3S01_1453 PF01568 Molydopterin dinucleotide binding domain Vc3S01_1454 PF13247 4Fe-4S dicluster domain Vc3S01_1454 PF12800 4Fe-4S binding domain Vc3S01_1455 PF04976 DMSO reductase anchor subunit (DmsC) Vc3S01_1456 PF02613 Nitrate reductase delta subunit Vc3S01_1457 PF02525 Flavodoxin-like fold Vc3S01_1458 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Vc3S01_1458 PF00270 DEAD/DEAH box helicase Vc3S01_1458 PF11898 Domain of unknown function (DUF3418) Vc3S01_1458 PF04408 Helicase associated domain (HA2) Vc3S01_1458 PF00271 Helicase conserved C-terminal domain Vc3S01_1464 PF04204 Homoserine O-succinyltransferase Vc3S01_1468 PF00893 Small Multidrug Resistance protein Vc3S01_1469 PF13520 Amino acid permease Vc3S01_1471 PF01810 LysE type translocator Vc3S01_1472 PF03279 Bacterial lipid A biosynthesis acyltransferase Vc3S01_1473 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_1476 PF02074 Carboxypeptidase Taq (M32) metallopeptidase Vc3S01_1477 PF01810 LysE type translocator Vc3S01_1479 PF01117 Aerolysin toxin Vc3S01_1479 PF03440 Aerolysin/Pertussis toxin (APT) domain Vc3S01_1480 PF13737 Transposase DDE domain Vc3S01_1481 PF03440 Aerolysin/Pertussis toxin (APT) domain Vc3S01_1481 PF01117 Aerolysin toxin Vc3S01_1483 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Vc3S01_1484 PF03440 Aerolysin/Pertussis toxin (APT) domain Vc3S01_1484 PF01117 Aerolysin toxin Vc3S01_1486 PF01235 Sodium:alanine symporter family Vc3S01_1491 PF00884 Sulfatase Vc3S01_1494 PF01406 tRNA synthetases class I (C) catalytic domain Vc3S01_1495 PF01554 MatE Vc3S01_1496 PF00571 CBS domain Vc3S01_1498 PF02028 BCCT, betaine/carnitine/choline family transporter Vc3S01_1499 PF00583 Acetyltransferase (GNAT) family Vc3S01_1500 PF00202 Aminotransferase class-III Vc3S01_1501 PF06339 Ectoine synthase Vc3S01_1502 PF13840 ACT domain Vc3S01_1502 PF00696 Amino acid kinase family Vc3S01_1503 PF03150 Di-haem cytochrome c peroxidase Vc3S01_1503 PF00034 Cytochrome c Vc3S01_1504 PF05922 Peptidase inhibitor I9 Vc3S01_1504 PF04151 Bacterial pre-peptidase C-terminal domain Vc3S01_1504 PF00082 Subtilase family Vc3S01_1505 PF03413 Peptidase propeptide and YPEB domain Vc3S01_1505 PF01447 Thermolysin metallopeptidase, catalytic domain Vc3S01_1505 PF07504 Fungalysin/Thermolysin Propeptide Motif Vc3S01_1505 PF02868 Thermolysin metallopeptidase, alpha-helical domain Vc3S01_1505 PF04151 Bacterial pre-peptidase C-terminal domain Vc3S01_1508 PF01220 Dehydroquinase class II Vc3S01_1509 PF08501 Shikimate dehydrogenase substrate binding domain Vc3S01_1509 PF01488 Shikimate / quinate 5-dehydrogenase Vc3S01_1510 PF03737 Aldolase/RraA Vc3S01_1511 PF04303 PrpF protein Vc3S01_1512 PF04909 Amidohydrolase Vc3S01_1513 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit Vc3S01_1514 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Vc3S01_1516 PF02585 GlcNAc-PI de-N-acetylase Vc3S01_1517 PF00248 Aldo/keto reductase family Vc3S01_1518 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Vc3S01_1520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1520 PF03466 LysR substrate binding domain Vc3S01_1521 PF03480 Bacterial extracellular solute-binding protein, family 7 Vc3S01_1522 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Vc3S01_1523 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Vc3S01_1524 PF03547 Membrane transport protein Vc3S01_1526 PF01261 Xylose isomerase-like TIM barrel Vc3S01_1534 PF00174 Oxidoreductase molybdopterin binding domain Vc3S01_1535 PF01794 Ferric reductase like transmembrane component Vc3S01_1542 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_1546 PF00989 PAS fold Vc3S01_1546 PF17203 Single cache domain 3 Vc3S01_1546 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Vc3S01_1546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1547 PF00072 Response regulator receiver domain Vc3S01_1547 PF12431 Transcriptional regulator Vc3S01_1548 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Vc3S01_1548 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Vc3S01_1549 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Vc3S01_1550 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Vc3S01_1550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Vc3S01_1555 PF00158 Sigma-54 interaction domain Vc3S01_1555 PF01590 GAF domain Vc3S01_1555 PF02954 Bacterial regulatory protein, Fis family Vc3S01_1556 PF00171 Aldehyde dehydrogenase family Vc3S01_1557 PF16868 NMT1-like family Vc3S01_1558 PF01925 Sulfite exporter TauE/SafE Vc3S01_1559 PF01970 Tripartite tricarboxylate transporter TctA family Vc3S01_1566 PF03793 PASTA domain Vc3S01_1566 PF00069 Protein kinase domain Vc3S01_1573 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_1573 PF07724 AAA domain (Cdc48 subfamily) Vc3S01_1573 PF17871 AAA lid domain Vc3S01_1573 PF10431 C-terminal, D2-small domain, of ClpB protein Vc3S01_1584 PF16671 Actin cross-linking domain Vc3S01_1584 PF04717 Type VI secretion system, phage-baseplate injector Vc3S01_1588 PF00285 Citrate synthase, C-terminal domain Vc3S01_1589 PF00330 Aconitase family (aconitate hydratase) Vc3S01_1589 PF00694 Aconitase C-terminal domain Vc3S01_1590 PF04303 PrpF protein Vc3S01_1591 PF16177 Acetyl-coenzyme A synthetase N-terminus Vc3S01_1591 PF00501 AMP-binding enzyme Vc3S01_1591 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_1592 PF03466 LysR substrate binding domain Vc3S01_1592 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1593 PF00884 Sulfatase Vc3S01_1594 PF00583 Acetyltransferase (GNAT) family Vc3S01_1596 PF00089 Trypsin Vc3S01_1599 PF04055 Radical SAM superfamily Vc3S01_1600 PF06508 Queuosine biosynthesis protein QueC Vc3S01_1601 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1601 PF17158 Membrane-associated sensor, integral membrane domain Vc3S01_1603 PF00691 OmpA family Vc3S01_1603 PF05736 OprF membrane domain Vc3S01_1606 PF05736 OprF membrane domain Vc3S01_1606 PF00691 OmpA family Vc3S01_1609 PF17785 PUA-like domain Vc3S01_1609 PF10672 S-adenosylmethionine-dependent methyltransferase Vc3S01_1610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_1610 PF00672 HAMP domain Vc3S01_1610 PF02743 Cache domain Vc3S01_1611 PF00708 Acylphosphatase Vc3S01_1612 PF04358 DsrC like protein Vc3S01_1614 PF01027 Inhibitor of apoptosis-promoting Bax1 Vc3S01_1615 PF00005 ABC transporter Vc3S01_1616 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1617 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1618 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_1619 PF10414 Sirohaem synthase dimerisation region Vc3S01_1619 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Vc3S01_1619 PF14824 Sirohaem biosynthesis protein central Vc3S01_1620 PF04461 Protein of unknown function (DUF520) Vc3S01_1621 PF00793 DAHP synthetase I family Vc3S01_1625 PF01189 16S rRNA methyltransferase RsmB/F Vc3S01_1625 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Vc3S01_1625 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF Vc3S01_1626 PF02470 MlaD protein Vc3S01_1627 PF04403 Paraquat-inducible protein A Vc3S01_1628 PF00664 ABC transporter transmembrane region Vc3S01_1628 PF00005 ABC transporter Vc3S01_1629 PF13185 GAF domain Vc3S01_1630 PF04352 ProQ/FINO family Vc3S01_1630 PF17516 ProQ C-terminal domain Vc3S01_1631 PF03572 Peptidase family S41 Vc3S01_1631 PF00595 PDZ domain Vc3S01_1631 PF11818 C-terminal domain of tail specific protease (DUF3340) Vc3S01_1631 PF17804 Tail specific protease N-terminal domain Vc3S01_1633 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Vc3S01_1633 PF01433 Peptidase family M1 domain Vc3S01_1633 PF11940 Domain of unknown function (DUF3458) Ig-like fold Vc3S01_1634 PF05088 Bacterial NAD-glutamate dehydrogenase Vc3S01_1635 PF01180 Dihydroorotate dehydrogenase Vc3S01_1636 PF07126 Cell-division protein ZapC Vc3S01_1637 PF01170 Putative RNA methylase family UPF0020 Vc3S01_1637 PF02926 THUMP domain Vc3S01_1637 PF10672 S-adenosylmethionine-dependent methyltransferase Vc3S01_1641 PF04957 Ribosome modulation factor Vc3S01_1642 PF07977 FabA-like domain Vc3S01_1643 PF13654 AAA domain Vc3S01_1643 PF05362 Lon protease (S16) C-terminal proteolytic domain Vc3S01_1644 PF17414 MatP C-terminal ribbon-helix-helix domain Vc3S01_1644 PF06303 MatP N-terminal domain Vc3S01_1650 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1650 PF09308 LuxQ, periplasmic Vc3S01_1650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1650 PF00072 Response regulator receiver domain Vc3S01_1653 PF00115 Cytochrome C and Quinol oxidase polypeptide I Vc3S01_1656 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Vc3S01_1656 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Vc3S01_1658 PF00403 Heavy-metal-associated domain Vc3S01_1661 PF13545 Crp-like helix-turn-helix domain Vc3S01_1661 PF00027 Cyclic nucleotide-binding domain Vc3S01_1663 PF00582 Universal stress protein family Vc3S01_1664 PF01171 PP-loop family Vc3S01_1668 PF00005 ABC transporter Vc3S01_1668 PF08402 TOBE domain Vc3S01_1669 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1670 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1671 PF13416 Bacterial extracellular solute-binding protein Vc3S01_1672 PF13416 Bacterial extracellular solute-binding protein Vc3S01_1673 PF02146 Sir2 family Vc3S01_1677 PF13247 4Fe-4S dicluster domain Vc3S01_1678 PF00384 Molybdopterin oxidoreductase Vc3S01_1678 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_1678 PF01568 Molydopterin dinucleotide binding domain Vc3S01_1680 PF02613 Nitrate reductase delta subunit Vc3S01_1685 PF02634 FdhD/NarQ family Vc3S01_1686 PF00884 Sulfatase Vc3S01_1688 PF12848 ABC transporter Vc3S01_1688 PF00005 ABC transporter Vc3S01_1691 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1691 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1692 PF00158 Sigma-54 interaction domain Vc3S01_1692 PF00072 Response regulator receiver domain Vc3S01_1692 PF02954 Bacterial regulatory protein, Fis family Vc3S01_1693 PF12849 PBP superfamily domain Vc3S01_1694 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1695 PF08402 TOBE domain Vc3S01_1695 PF00005 ABC transporter Vc3S01_1696 PF12804 MobA-like NTP transferase domain Vc3S01_1697 PF00994 Probable molybdopterin binding domain Vc3S01_1697 PF03453 MoeA N-terminal region (domain I and II) Vc3S01_1697 PF03454 MoeA C-terminal region (domain IV) Vc3S01_1699 PF00480 ROK family Vc3S01_1708 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_1708 PF00672 HAMP domain Vc3S01_1708 PF17202 Single cache domain 3 Vc3S01_1709 PF00877 NlpC/P60 family Vc3S01_1711 PF05230 MASE2 domain Vc3S01_1711 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1712 PF01339 CheB methylesterase Vc3S01_1712 PF00072 Response regulator receiver domain Vc3S01_1715 PF00677 Lumazine binding domain Vc3S01_1716 PF01554 MatE Vc3S01_1718 PF01068 ATP dependent DNA ligase domain Vc3S01_1718 PF14743 DNA ligase OB-like domain Vc3S01_1719 PF01740 STAS domain Vc3S01_1720 PF00691 OmpA family Vc3S01_1721 PF02563 Polysaccharide biosynthesis/export protein Vc3S01_1721 PF10531 SLBB domain Vc3S01_1724 PF02954 Bacterial regulatory protein, Fis family Vc3S01_1724 PF00158 Sigma-54 interaction domain Vc3S01_1724 PF00072 Response regulator receiver domain Vc3S01_1725 PF13439 Glycosyltransferase Family 4 Vc3S01_1725 PF00534 Glycosyl transferases group 1 Vc3S01_1726 PF13439 Glycosyltransferase Family 4 Vc3S01_1726 PF00534 Glycosyl transferases group 1 Vc3S01_1732 PF00534 Glycosyl transferases group 1 Vc3S01_1732 PF13439 Glycosyltransferase Family 4 Vc3S01_1734 PF02397 Bacterial sugar transferase Vc3S01_1736 PF13322 Domain of unknown function (DUF4092) Vc3S01_1736 PF17291 N-terminal domain of M60-like peptidases Vc3S01_1736 PF13402 Peptidase M60, enhancin and enhancin-like Vc3S01_1741 PF13188 PAS domain Vc3S01_1741 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_1741 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1741 PF00563 EAL domain Vc3S01_1742 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1742 PF00072 Response regulator receiver domain Vc3S01_1742 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Vc3S01_1742 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1742 PF00672 HAMP domain Vc3S01_1742 PF01627 Hpt domain Vc3S01_1746 PF12464 Maltose acetyltransferase Vc3S01_1746 PF00132 Bacterial transferase hexapeptide (six repeats) Vc3S01_1748 PF01928 CYTH domain Vc3S01_1751 PF01047 MarR family Vc3S01_1753 PF01238 Phosphomannose isomerase type I Vc3S01_1756 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_1756 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Vc3S01_1758 PF05378 Hydantoinase/oxoprolinase N-terminal region Vc3S01_1758 PF01968 Hydantoinase/oxoprolinase Vc3S01_1760 PF07748 Glycosyl hydrolases family 38 C-terminal domain Vc3S01_1760 PF01074 Glycosyl hydrolases family 38 N-terminal domain Vc3S01_1760 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 Vc3S01_1760 PF09261 Alpha mannosidase middle domain Vc3S01_1760 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain Vc3S01_1761 PF00480 ROK family Vc3S01_1762 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Vc3S01_1764 PF00480 ROK family Vc3S01_1767 PF03729 Short repeat of unknown function (DUF308) Vc3S01_1768 PF00924 Mechanosensitive ion channel Vc3S01_1770 PF04151 Bacterial pre-peptidase C-terminal domain Vc3S01_1770 PF00082 Subtilase family Vc3S01_1770 PF05922 Peptidase inhibitor I9 Vc3S01_1771 PF12561 ToxR activated gene A lipoprotein domain Vc3S01_1771 PF17945 Beta/Gamma crystallin Vc3S01_1772 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family Vc3S01_1784 PF01966 HD domain Vc3S01_1791 PF00873 AcrB/AcrD/AcrF family Vc3S01_1792 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_1793 PF03616 Sodium/glutamate symporter Vc3S01_1796 PF14497 Glutathione S-transferase, C-terminal domain Vc3S01_1796 PF02798 Glutathione S-transferase, N-terminal domain Vc3S01_1798 PF04209 homogentisate 1,2-dioxygenase Vc3S01_1799 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_1801 PF07687 Peptidase dimerisation domain Vc3S01_1801 PF01546 Peptidase family M20/M25/M40 Vc3S01_1802 PF12561 ToxR activated gene A lipoprotein domain Vc3S01_1802 PF00041 Fibronectin type III domain Vc3S01_1806 PF01048 Phosphorylase superfamily Vc3S01_1809 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1809 PF00072 Response regulator receiver domain Vc3S01_1810 PF05971 RNA methyltransferase Vc3S01_1811 PF01863 Protein of unknown function DUF45 Vc3S01_1812 PF02368 Bacterial Ig-like domain (group 2) Vc3S01_1812 PF11999 Protein of unknown function (DUF3494) Vc3S01_1814 PF00732 GMC oxidoreductase Vc3S01_1814 PF05199 GMC oxidoreductase Vc3S01_1815 PF01339 CheB methylesterase Vc3S01_1815 PF00072 Response regulator receiver domain Vc3S01_1817 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1817 PF09308 LuxQ, periplasmic Vc3S01_1817 PF00072 Response regulator receiver domain Vc3S01_1817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1827 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_1827 PF14245 Type IV pilin PilA Vc3S01_1832 PF03466 LysR substrate binding domain Vc3S01_1832 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1833 PF07690 Major Facilitator Superfamily Vc3S01_1837 PF00005 ABC transporter Vc3S01_1838 PF01032 FecCD transport family Vc3S01_1839 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Vc3S01_1841 PF00300 Histidine phosphatase superfamily (branch 1) Vc3S01_1842 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Vc3S01_1843 PF02654 Cobalamin-5-phosphate synthase Vc3S01_1844 PF02277 Phosphoribosyltransferase Vc3S01_1845 PF01613 Flavin reductase like domain Vc3S01_1846 PF13460 NAD(P)H-binding Vc3S01_1849 PF00929 Exonuclease Vc3S01_1849 PF08411 Exonuclease C-terminal Vc3S01_1850 PF03788 LrgA family Vc3S01_1851 PF04172 LrgB-like family Vc3S01_1852 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Vc3S01_1852 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region Vc3S01_1854 PF02222 ATP-grasp domain Vc3S01_1855 PF05724 Thiopurine S-methyltransferase (TPMT) Vc3S01_1857 PF00216 Bacterial DNA-binding protein Vc3S01_1860 PF00550 Phosphopantetheine attachment site Vc3S01_1860 PF00668 Condensation domain Vc3S01_1860 PF00501 AMP-binding enzyme Vc3S01_1860 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_1861 PF01032 FecCD transport family Vc3S01_1862 PF01032 FecCD transport family Vc3S01_1863 PF01497 Periplasmic binding protein Vc3S01_1864 PF00593 TonB dependent receptor Vc3S01_1864 PF07715 TonB-dependent Receptor Plug Domain Vc3S01_1865 PF00668 Condensation domain Vc3S01_1865 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_1865 PF00501 AMP-binding enzyme Vc3S01_1866 PF00975 Thioesterase domain Vc3S01_1867 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Vc3S01_1868 PF00550 Phosphopantetheine attachment site Vc3S01_1868 PF00501 AMP-binding enzyme Vc3S01_1868 PF00668 Condensation domain Vc3S01_1869 PF00282 Pyridoxal-dependent decarboxylase conserved domain Vc3S01_1871 PF08021 Siderophore-interacting FAD-binding domain Vc3S01_1871 PF00664 ABC transporter transmembrane region Vc3S01_1871 PF04954 Siderophore-interacting protein Vc3S01_1871 PF00005 ABC transporter Vc3S01_1872 PF00005 ABC transporter Vc3S01_1872 PF00664 ABC transporter transmembrane region Vc3S01_1873 PF00857 Isochorismatase family Vc3S01_1873 PF00550 Phosphopantetheine attachment site Vc3S01_1874 PF03147 Ferredoxin-fold anticodon binding domain Vc3S01_1874 PF01588 Putative tRNA binding domain Vc3S01_1874 PF03484 tRNA synthetase B5 domain Vc3S01_1874 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Vc3S01_1874 PF03483 B3/4 domain Vc3S01_1875 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Vc3S01_1875 PF01409 tRNA synthetases class II core domain (F) Vc3S01_1876 PF17158 Membrane-associated sensor, integral membrane domain Vc3S01_1876 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1883 PF01906 Putative heavy-metal-binding Vc3S01_1884 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_1885 PF01042 Endoribonuclease L-PSP Vc3S01_1888 PF00453 Ribosomal protein L20 Vc3S01_1889 PF01632 Ribosomal protein L35 Vc3S01_1890 PF05198 Translation initiation factor IF-3, N-terminal domain Vc3S01_1890 PF00707 Translation initiation factor IF-3, C-terminal domain Vc3S01_1891 PF03129 Anticodon binding domain Vc3S01_1891 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Vc3S01_1891 PF02824 TGS domain Vc3S01_1891 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Vc3S01_1893 PF07702 UTRA domain Vc3S01_1893 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_1894 PF01979 Amidohydrolase family Vc3S01_1895 PF00491 Arginase family Vc3S01_1896 PF17391 Urocanase N-terminal domain Vc3S01_1896 PF17392 Urocanase C-terminal domain Vc3S01_1896 PF01175 Urocanase Rossmann-like domain Vc3S01_1897 PF00221 Aromatic amino acid lyase Vc3S01_1901 PF03496 ADP-ribosyltransferase exoenzyme Vc3S01_1902 PF03496 ADP-ribosyltransferase exoenzyme Vc3S01_1906 PF13183 4Fe-4S dicluster domain Vc3S01_1906 PF02913 FAD linked oxidases, C-terminal domain Vc3S01_1906 PF01565 FAD binding domain Vc3S01_1909 PF00691 OmpA family Vc3S01_1909 PF05736 OprF membrane domain Vc3S01_1914 PF01259 SAICAR synthetase Vc3S01_1915 PF09423 PhoD-like phosphatase Vc3S01_1915 PF16655 PhoD-like phosphatase, N-terminal domain Vc3S01_1917 PF02253 Phospholipase A1 Vc3S01_1918 PF11898 Domain of unknown function (DUF3418) Vc3S01_1918 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Vc3S01_1918 PF00270 DEAD/DEAH box helicase Vc3S01_1918 PF00271 Helicase conserved C-terminal domain Vc3S01_1918 PF04408 Helicase associated domain (HA2) Vc3S01_1919 PF00390 Malic enzyme, N-terminal domain Vc3S01_1919 PF03949 Malic enzyme, NAD binding domain Vc3S01_1920 PF02698 DUF218 domain Vc3S01_1921 PF00939 Sodium:sulfate symporter transmembrane region Vc3S01_1922 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1922 PF08448 PAS fold Vc3S01_1924 PF00266 Aminotransferase class-V Vc3S01_1926 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_1927 PF00664 ABC transporter transmembrane region Vc3S01_1927 PF00005 ABC transporter Vc3S01_1928 PF00005 ABC transporter Vc3S01_1928 PF00664 ABC transporter transmembrane region Vc3S01_1929 PF00291 Pyridoxal-phosphate dependent enzyme Vc3S01_1930 PF02447 GntP family permease Vc3S01_1931 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_1931 PF03466 LysR substrate binding domain Vc3S01_1932 PF00563 EAL domain Vc3S01_1932 PF12792 CSS motif domain associated with EAL Vc3S01_1938 PF00563 EAL domain Vc3S01_1938 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1938 PF08447 PAS fold Vc3S01_1938 PF08448 PAS fold Vc3S01_1941 PF00266 Aminotransferase class-V Vc3S01_1943 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_1943 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1943 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1946 PF04993 TfoX N-terminal domain Vc3S01_1946 PF04994 TfoX C-terminal domain Vc3S01_1948 PF03956 Lysine exporter LysO Vc3S01_1950 PF00282 Pyridoxal-dependent decarboxylase conserved domain Vc3S01_1951 PF01418 Helix-turn-helix domain, rpiR family Vc3S01_1951 PF01380 SIS domain Vc3S01_1952 PF00465 Iron-containing alcohol dehydrogenase Vc3S01_1953 PF00462 Glutaredoxin Vc3S01_1954 PF06826 Predicted Permease Membrane Region Vc3S01_1954 PF02080 TrkA-C domain Vc3S01_1955 PF12241 Trans-2-enoyl-CoA reductase catalytic region Vc3S01_1955 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Vc3S01_1955 PF07055 Enoyl reductase FAD binding domain Vc3S01_1956 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Vc3S01_1956 PF02770 Acyl-CoA dehydrogenase, middle domain Vc3S01_1956 PF09317 Domain of unknown function (DUF1974) Vc3S01_1956 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Vc3S01_1957 PF16295 Tetracyclin repressor-like, C-terminal domain Vc3S01_1957 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_1958 PF06965 Na+/H+ antiporter 1 Vc3S01_1961 PF00005 ABC transporter Vc3S01_1962 PF01554 MatE Vc3S01_1963 PF13460 NAD(P)H-binding Vc3S01_1963 PF11066 Protein of unknown function (DUF2867) Vc3S01_1965 PF01734 Patatin-like phospholipase Vc3S01_1967 PF07690 Major Facilitator Superfamily Vc3S01_1968 PF01479 S4 domain Vc3S01_1968 PF00849 RNA pseudouridylate synthase Vc3S01_1969 PF04851 Type III restriction enzyme, res subunit Vc3S01_1969 PF00271 Helicase conserved C-terminal domain Vc3S01_1972 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_1972 PF17155 Gammaproteobacterial periplasmic sensor domain Vc3S01_1974 PF00072 Response regulator receiver domain Vc3S01_1974 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_1975 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1975 PF00672 HAMP domain Vc3S01_1977 PF00535 Glycosyl transferase family 2 Vc3S01_1977 PF02709 N-terminal domain of galactosyltransferase Vc3S01_1978 PF01386 Ribosomal L25p family Vc3S01_1981 PF00149 Calcineurin-like phosphoesterase Vc3S01_1981 PF02872 5'-nucleotidase, C-terminal domain Vc3S01_1985 PF00916 Sulfate permease family Vc3S01_1985 PF01740 STAS domain Vc3S01_1987 PF00072 Response regulator receiver domain Vc3S01_1987 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_1988 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_1988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_1990 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_1990 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Vc3S01_1992 PF09335 SNARE associated Golgi protein Vc3S01_1993 PF13416 Bacterial extracellular solute-binding protein Vc3S01_1994 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_1995 PF00005 ABC transporter Vc3S01_1996 PF01066 CDP-alcohol phosphatidyltransferase Vc3S01_1998 PF07690 Major Facilitator Superfamily Vc3S01_2000 PF00158 Sigma-54 interaction domain Vc3S01_2000 PF01590 GAF domain Vc3S01_2001 PF03063 Prismane/CO dehydrogenase family Vc3S01_2002 PF00970 Oxidoreductase FAD-binding domain Vc3S01_2002 PF00175 Oxidoreductase NAD-binding domain Vc3S01_2002 PF00111 2Fe-2S iron-sulfur cluster binding domain Vc3S01_2004 PF00849 RNA pseudouridylate synthase Vc3S01_2005 PF12729 Four helix bundle sensory module for signal transduction Vc3S01_2005 PF00672 HAMP domain Vc3S01_2005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_2006 PF00209 Sodium:neurotransmitter symporter family Vc3S01_2007 PF13091 PLD-like domain Vc3S01_2007 PF13396 Phospholipase_D-nuclease N-terminal Vc3S01_2008 PF01053 Cys/Met metabolism PLP-dependent enzyme Vc3S01_2009 PF00561 alpha/beta hydrolase fold Vc3S01_2010 PF03280 Proteobacterial lipase chaperone protein Vc3S01_2013 PF03352 Methyladenine glycosylase Vc3S01_2014 PF00873 AcrB/AcrD/AcrF family Vc3S01_2015 PF13533 Biotin-lipoyl like Vc3S01_2017 PF04024 PspC domain Vc3S01_2018 PF06667 Phage shock protein B Vc3S01_2019 PF04012 PspA/IM30 family Vc3S01_2020 PF02954 Bacterial regulatory protein, Fis family Vc3S01_2020 PF00158 Sigma-54 interaction domain Vc3S01_2021 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_2022 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2023 PF12911 N-terminal TM domain of oligopeptide transport permease C Vc3S01_2023 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2024 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_2024 PF00005 ABC transporter Vc3S01_2025 PF00005 ABC transporter Vc3S01_2027 PF01368 DHH family Vc3S01_2027 PF02833 DHHA2 domain Vc3S01_2029 PF16874 Glycosyl hydrolase family 36 C-terminal domain Vc3S01_2029 PF16875 Glycosyl hydrolase family 36 N-terminal domain Vc3S01_2030 PF01568 Molydopterin dinucleotide binding domain Vc3S01_2030 PF18364 Molybdopterin oxidoreductase N-terminal domain Vc3S01_2030 PF00384 Molybdopterin oxidoreductase Vc3S01_2031 PF03264 NapC/NirT cytochrome c family, N-terminal region Vc3S01_2032 PF06796 Periplasmic nitrate reductase protein NapE Vc3S01_2033 PF03649 Uncharacterised protein family (UPF0014) Vc3S01_2035 PF01226 Formate/nitrite transporter Vc3S01_2040 PF02698 DUF218 domain Vc3S01_2041 PF00265 Thymidine kinase Vc3S01_2042 PF01406 tRNA synthetases class I (C) catalytic domain Vc3S01_2042 PF09190 DALR domain Vc3S01_2043 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Vc3S01_2044 PF00149 Calcineurin-like phosphoesterase Vc3S01_2045 PF00563 EAL domain Vc3S01_2045 PF08668 HDOD domain Vc3S01_2046 PF02810 SEC-C motif Vc3S01_2047 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Vc3S01_2047 PF01502 Phosphoribosyl-AMP cyclohydrolase Vc3S01_2048 PF00977 Histidine biosynthesis protein Vc3S01_2049 PF00977 Histidine biosynthesis protein Vc3S01_2050 PF00117 Glutamine amidotransferase class-I Vc3S01_2051 PF00475 Imidazoleglycerol-phosphate dehydratase Vc3S01_2051 PF08645 Polynucleotide kinase 3 phosphatase Vc3S01_2052 PF00155 Aminotransferase class I and II Vc3S01_2053 PF00815 Histidinol dehydrogenase Vc3S01_2054 PF01634 ATP phosphoribosyltransferase Vc3S01_2054 PF08029 HisG, C-terminal domain Vc3S01_2055 PF00158 Sigma-54 interaction domain Vc3S01_2055 PF02954 Bacterial regulatory protein, Fis family Vc3S01_2055 PF00072 Response regulator receiver domain Vc3S01_2056 PF03553 Na+/H+ antiporter family Vc3S01_2057 PF00816 H-NS histone family Vc3S01_2058 PF00294 pfkB family carbohydrate kinase Vc3S01_2061 PF04356 Protein of unknown function (DUF489) Vc3S01_2062 PF08328 Adenylosuccinate lyase C-terminal Vc3S01_2062 PF00206 Lyase Vc3S01_2069 PF00106 short chain dehydrogenase Vc3S01_2071 PF01435 Peptidase family M48 Vc3S01_2074 PF08241 Methyltransferase domain Vc3S01_2075 PF00155 Aminotransferase class I and II Vc3S01_2076 PF04055 Radical SAM superfamily Vc3S01_2076 PF06968 Biotin and Thiamin Synthesis associated domain Vc3S01_2078 PF01258 Prokaryotic dksA/traR C4-type zinc finger Vc3S01_2081 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Vc3S01_2081 PF02403 Seryl-tRNA synthetase N-terminal domain Vc3S01_2082 PF12002 MgsA AAA+ ATPase C terminal Vc3S01_2082 PF16193 AAA C-terminal domain Vc3S01_2082 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_2083 PF03548 Outer membrane lipoprotein carrier protein LolA Vc3S01_2084 PF01580 FtsK/SpoIIIE family Vc3S01_2084 PF17854 FtsK alpha domain Vc3S01_2084 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Vc3S01_2084 PF09397 Ftsk gamma domain Vc3S01_2085 PF01037 Lrp/AsnC ligand binding domain Vc3S01_2086 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Vc3S01_2086 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Vc3S01_2088 PF03466 LysR substrate binding domain Vc3S01_2088 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2090 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) Vc3S01_2093 PF01979 Amidohydrolase family Vc3S01_2094 PF01752 Collagenase Vc3S01_2094 PF08453 Peptidase family M9 N-terminal Vc3S01_2094 PF04151 Bacterial pre-peptidase C-terminal domain Vc3S01_2099 PF03372 Endonuclease/Exonuclease/phosphatase family Vc3S01_2101 PF00579 tRNA synthetases class I (W and Y) Vc3S01_2102 PF00141 Peroxidase Vc3S01_2103 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_2103 PF01464 Transglycosylase SLT domain Vc3S01_2106 PF03606 C4-dicarboxylate anaerobic carrier Vc3S01_2107 PF07687 Peptidase dimerisation domain Vc3S01_2107 PF01546 Peptidase family M20/M25/M40 Vc3S01_2108 PF07729 FCD domain Vc3S01_2108 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_2110 PF00873 AcrB/AcrD/AcrF family Vc3S01_2111 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_2111 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_2113 PF02743 Cache domain Vc3S01_2113 PF00672 HAMP domain Vc3S01_2113 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_2115 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2116 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_2117 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_2117 PF00005 ABC transporter Vc3S01_2118 PF00005 ABC transporter Vc3S01_2118 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_2119 PF01554 MatE Vc3S01_2121 PF03831 PhnA domain Vc3S01_2121 PF08274 PhnA Zinc-Ribbon Vc3S01_2125 PF00884 Sulfatase Vc3S01_2132 PF05844 YopD protein Vc3S01_2134 PF07720 Tetratricopeptide repeat Vc3S01_2135 PF04792 V antigen (LcrV) protein Vc3S01_2137 PF09621 Type III secretion system regulator (LcrR) Vc3S01_2138 PF00771 FHIPEP family Vc3S01_2142 PF09059 TyeA Vc3S01_2143 PF07201 HrpJ-like domain Vc3S01_2144 PF18269 T3SS EscN ATPase C-terminal domain Vc3S01_2144 PF02874 ATP synthase alpha/beta family, beta-barrel domain Vc3S01_2144 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Vc3S01_2147 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Vc3S01_2148 PF00813 FliP family Vc3S01_2149 PF01313 Bacterial export proteins, family 3 Vc3S01_2150 PF01311 Bacterial export proteins, family 1 Vc3S01_2151 PF01312 FlhB HrpN YscU SpaS Family Vc3S01_2154 PF02661 Fic/DOC family Vc3S01_2158 PF02108 Flagellar assembly protein FliH Vc3S01_2160 PF01514 Secretory protein of YscJ/FliF family Vc3S01_2161 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI Vc3S01_2164 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF Vc3S01_2170 PF12833 Helix-turn-helix domain Vc3S01_2177 PF06610 L-alanine exporter Vc3S01_2178 PF00072 Response regulator receiver domain Vc3S01_2178 PF09308 LuxQ, periplasmic Vc3S01_2178 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_2178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_2180 PF03738 Glutathionylspermidine synthase preATP-grasp Vc3S01_2182 PF03994 Domain of Unknown Function (DUF350) Vc3S01_2184 PF02445 Quinolinate synthetase A protein Vc3S01_2185 PF13174 Tetratricopeptide repeat Vc3S01_2185 PF16331 TolA binding protein trimerisation Vc3S01_2186 PF00691 OmpA family Vc3S01_2187 PF04052 TolB amino-terminal domain Vc3S01_2187 PF07676 WD40-like Beta Propeller Repeat Vc3S01_2189 PF02472 Biopolymer transport protein ExbD/TolR Vc3S01_2190 PF01618 MotA/TolQ/ExbB proton channel family Vc3S01_2191 PF03061 Thioesterase superfamily Vc3S01_2193 PF02322 Cytochrome bd terminal oxidase subunit II Vc3S01_2194 PF01654 Cytochrome bd terminal oxidase subunit I Vc3S01_2195 PF05496 Holliday junction DNA helicase RuvB P-loop domain Vc3S01_2195 PF17864 RuvB AAA lid domain Vc3S01_2195 PF05491 RuvB C-terminal winged helix domain Vc3S01_2196 PF07499 RuvA, C-terminal domain Vc3S01_2196 PF01330 RuvA N terminal domain Vc3S01_2197 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_2197 PF02203 Tar ligand binding domain homologue Vc3S01_2197 PF00672 HAMP domain Vc3S01_2198 PF02075 Crossover junction endodeoxyribonuclease RuvC Vc3S01_2199 PF02938 GAD domain Vc3S01_2199 PF01336 OB-fold nucleic acid binding domain Vc3S01_2199 PF00152 tRNA synthetases class II (D, K and N) Vc3S01_2200 PF01904 Protein of unknown function DUF72 Vc3S01_2201 PF13649 Methyltransferase domain Vc3S01_2202 PF08003 Protein of unknown function (DUF1698) Vc3S01_2203 PF18030 RimK PreATP-grasp domain Vc3S01_2203 PF08443 RimK-like ATP-grasp domain Vc3S01_2207 PF05199 GMC oxidoreductase Vc3S01_2207 PF00732 GMC oxidoreductase Vc3S01_2208 PF00501 AMP-binding enzyme Vc3S01_2208 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_2209 PF00171 Aldehyde dehydrogenase family Vc3S01_2211 PF12833 Helix-turn-helix domain Vc3S01_2211 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Vc3S01_2212 PF04310 MukB N-terminal Vc3S01_2212 PF16330 MukB hinge domain Vc3S01_2213 PF04288 MukE-like family Vc3S01_2214 PF17193 MukF C-terminal domain Vc3S01_2214 PF17192 MukF middle domain Vc3S01_2214 PF03882 MukF winged-helix domain Vc3S01_2216 PF02698 DUF218 domain Vc3S01_2217 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_2217 PF00072 Response regulator receiver domain Vc3S01_2218 PF02613 Nitrate reductase delta subunit Vc3S01_2219 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_2220 PF04993 TfoX N-terminal domain Vc3S01_2220 PF04994 TfoX C-terminal domain Vc3S01_2224 PF08323 Starch synthase catalytic domain Vc3S01_2224 PF00534 Glycosyl transferases group 1 Vc3S01_2225 PF00483 Nucleotidyl transferase Vc3S01_2226 PF01396 Topoisomerase DNA binding C4 zinc finger Vc3S01_2226 PF01131 DNA topoisomerase Vc3S01_2226 PF01751 Toprim domain Vc3S01_2226 PF08272 Topoisomerase I zinc-ribbon-like Vc3S01_2227 PF10692 Protein of unknown function (DUF2498) Vc3S01_2228 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Vc3S01_2230 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Vc3S01_2231 PF04376 Arginine-tRNA-protein transferase, N terminus Vc3S01_2231 PF04377 Arginine-tRNA-protein transferase, C terminus Vc3S01_2232 PF01176 Translation initiation factor 1A / IF-1 Vc3S01_2233 PF10431 C-terminal, D2-small domain, of ClpB protein Vc3S01_2233 PF07724 AAA domain (Cdc48 subfamily) Vc3S01_2233 PF17871 AAA lid domain Vc3S01_2233 PF02861 Clp amino terminal domain, pathogenicity island component Vc3S01_2233 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_2234 PF02617 ATP-dependent Clp protease adaptor protein ClpS Vc3S01_2235 PF00313 'Cold-shock' DNA-binding domain Vc3S01_2236 PF03971 Monomeric isocitrate dehydrogenase Vc3S01_2237 PF00849 RNA pseudouridylate synthase Vc3S01_2238 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Vc3S01_2239 PF13609 Gram-negative porin Vc3S01_2240 PF13307 Helicase C-terminal domain Vc3S01_2240 PF06733 DEAD_2 Vc3S01_2241 PF01925 Sulfite exporter TauE/SafE Vc3S01_2242 PF07445 Primosomal replication protein priC Vc3S01_2243 PF10689 Protein of unknown function (DUF2496) Vc3S01_2244 PF03372 Endonuclease/Exonuclease/phosphatase family Vc3S01_2245 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2246 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2247 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_2248 PF00005 ABC transporter Vc3S01_2251 PF01228 Glycine radical Vc3S01_2251 PF02901 Pyruvate formate lyase-like Vc3S01_2253 PF04055 Radical SAM superfamily Vc3S01_2255 PF03887 YfbU domain Vc3S01_2256 PF06798 PrkA serine protein kinase C-terminal domain Vc3S01_2256 PF08298 PrkA AAA domain Vc3S01_2257 PF04285 Protein of unknown function (DUF444) Vc3S01_2258 PF04293 SpoVR like protein Vc3S01_2259 PF02348 Cytidylyltransferase Vc3S01_2260 PF03966 Trm112p-like protein Vc3S01_2261 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Vc3S01_2262 PF00664 ABC transporter transmembrane region Vc3S01_2262 PF00005 ABC transporter Vc3S01_2263 PF00753 Metallo-beta-lactamase superfamily Vc3S01_2263 PF03772 Competence protein Vc3S01_2263 PF13567 Domain of unknown function (DUF4131) Vc3S01_2265 PF12704 MacB-like periplasmic core domain Vc3S01_2265 PF02687 FtsX-like permease family Vc3S01_2266 PF00005 ABC transporter Vc3S01_2267 PF12704 MacB-like periplasmic core domain Vc3S01_2267 PF02687 FtsX-like permease family Vc3S01_2269 PF17757 UvrB interaction domain Vc3S01_2269 PF03461 TRCF domain Vc3S01_2269 PF00271 Helicase conserved C-terminal domain Vc3S01_2269 PF00270 DEAD/DEAH box helicase Vc3S01_2269 PF02559 CarD-like/TRCF domain Vc3S01_2272 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_2273 PF05728 Uncharacterised protein family (UPF0227) Vc3S01_2275 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Vc3S01_2275 PF13036 Peptidoglycan-synthase activator LpoB Vc3S01_2278 PF01230 HIT domain Vc3S01_2279 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_2279 PF00672 HAMP domain Vc3S01_2281 PF01048 Phosphorylase superfamily Vc3S01_2282 PF00403 Heavy-metal-associated domain Vc3S01_2283 PF01554 MatE Vc3S01_2284 PF00571 CBS domain Vc3S01_2284 PF00478 IMP dehydrogenase / GMP reductase domain Vc3S01_2286 PF00037 4Fe-4S binding domain Vc3S01_2286 PF11953 Domain of unknown function (DUF3470) Vc3S01_2287 PF00588 SpoU rRNA Methylase family Vc3S01_2287 PF08032 RNA 2'-O ribose methyltransferase substrate binding Vc3S01_2288 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_2288 PF08448 PAS fold Vc3S01_2290 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Vc3S01_2291 PF09619 Type III secretion system lipoprotein chaperone (YscW) Vc3S01_2293 PF13404 AsnC-type helix-turn-helix domain Vc3S01_2293 PF01037 Lrp/AsnC ligand binding domain Vc3S01_2294 PF00291 Pyridoxal-phosphate dependent enzyme Vc3S01_2299 PF00873 AcrB/AcrD/AcrF family Vc3S01_2300 PF13533 Biotin-lipoyl like Vc3S01_2303 PF07690 Major Facilitator Superfamily Vc3S01_2304 PF03601 Conserved hypothetical protein 698 Vc3S01_2306 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2306 PF03466 LysR substrate binding domain Vc3S01_2307 PF00367 phosphotransferase system, EIIB Vc3S01_2307 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Vc3S01_2307 PF02378 Phosphotransferase system, EIIC Vc3S01_2308 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_2308 PF00501 AMP-binding enzyme Vc3S01_2309 PF13378 Enolase C-terminal domain-like Vc3S01_2310 PF00378 Enoyl-CoA hydratase/isomerase Vc3S01_2311 PF12697 Alpha/beta hydrolase family Vc3S01_2312 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Vc3S01_2312 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Vc3S01_2312 PF16582 Middle domain of thiamine pyrophosphate Vc3S01_2313 PF00425 chorismate binding enzyme Vc3S01_2314 PF00155 Aminotransferase class I and II Vc3S01_2316 PF01966 HD domain Vc3S01_2316 PF13286 Phosphohydrolase-associated domain Vc3S01_2320 PF13145 PPIC-type PPIASE domain Vc3S01_2321 PF00216 Bacterial DNA-binding protein Vc3S01_2322 PF02190 ATP-dependent protease La (LON) substrate-binding domain Vc3S01_2322 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_2322 PF05362 Lon protease (S16) C-terminal proteolytic domain Vc3S01_2323 PF06689 ClpX C4-type zinc finger Vc3S01_2323 PF10431 C-terminal, D2-small domain, of ClpB protein Vc3S01_2323 PF07724 AAA domain (Cdc48 subfamily) Vc3S01_2324 PF00574 Clp protease Vc3S01_2325 PF05698 Bacterial trigger factor protein (TF) C-terminus Vc3S01_2325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Vc3S01_2325 PF05697 Bacterial trigger factor protein (TF) Vc3S01_2326 PF02743 Cache domain Vc3S01_2326 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_2326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_2327 PF02954 Bacterial regulatory protein, Fis family Vc3S01_2327 PF00072 Response regulator receiver domain Vc3S01_2327 PF00158 Sigma-54 interaction domain Vc3S01_2329 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Vc3S01_2330 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Vc3S01_2331 PF03480 Bacterial extracellular solute-binding protein, family 7 Vc3S01_2332 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Vc3S01_2335 PF02386 Cation transport protein Vc3S01_2336 PF02080 TrkA-C domain Vc3S01_2336 PF02254 TrkA-N domain Vc3S01_2337 PF00270 DEAD/DEAH box helicase Vc3S01_2337 PF00271 Helicase conserved C-terminal domain Vc3S01_2338 PF01595 Cyclin M transmembrane N-terminal domain Vc3S01_2338 PF03471 Transporter associated domain Vc3S01_2338 PF00571 CBS domain Vc3S01_2339 PF07715 TonB-dependent Receptor Plug Domain Vc3S01_2339 PF00593 TonB dependent receptor Vc3S01_2340 PF01648 4'-phosphopantetheinyl transferase superfamily Vc3S01_2340 PF17837 4'-phosphopantetheinyl transferase N-terminal domain Vc3S01_2342 PF00975 Thioesterase domain Vc3S01_2342 PF00550 Phosphopantetheine attachment site Vc3S01_2342 PF00501 AMP-binding enzyme Vc3S01_2342 PF00550 Phosphopantetheine attachment site Vc3S01_2342 PF00668 Condensation domain Vc3S01_2342 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_2342 PF00975 Thioesterase domain Vc3S01_2342 PF00668 Condensation domain Vc3S01_2342 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_2342 PF00501 AMP-binding enzyme Vc3S01_2343 PF00857 Isochorismatase family Vc3S01_2343 PF00550 Phosphopantetheine attachment site Vc3S01_2344 PF00501 AMP-binding enzyme Vc3S01_2344 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_2345 PF00425 chorismate binding enzyme Vc3S01_2353 PF00266 Aminotransferase class-V Vc3S01_2357 PF12344 Ultra-violet resistance protein B Vc3S01_2357 PF02151 UvrB/uvrC motif Vc3S01_2357 PF04851 Type III restriction enzyme, res subunit Vc3S01_2357 PF00271 Helicase conserved C-terminal domain Vc3S01_2357 PF17757 UvrB interaction domain Vc3S01_2363 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Vc3S01_2363 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Vc3S01_2364 PF04480 Protein of unknown function (DUF559) Vc3S01_2365 PF07670 Nucleoside recognition Vc3S01_2365 PF01773 Na+ dependent nucleoside transporter N-terminus Vc3S01_2365 PF07662 Na+ dependent nucleoside transporter C-terminus Vc3S01_2366 PF03466 LysR substrate binding domain Vc3S01_2366 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2367 PF13406 Transglycosylase SLT domain Vc3S01_2368 PF05166 YcgL domain Vc3S01_2369 PF05209 Septum formation inhibitor MinC, N-terminal domain Vc3S01_2369 PF03775 Septum formation inhibitor MinC, C-terminal domain Vc3S01_2370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Vc3S01_2371 PF03776 Septum formation topological specificity factor MinE Vc3S01_2372 PF01612 3'-5' exonuclease Vc3S01_2372 PF00570 HRDC domain Vc3S01_2373 PF00501 AMP-binding enzyme Vc3S01_2373 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_2374 PF12697 Alpha/beta hydrolase family Vc3S01_2375 PF03843 Outer membrane lipoprotein Slp family Vc3S01_2377 PF00814 Glycoprotease family Vc3S01_2378 PF04851 Type III restriction enzyme, res subunit Vc3S01_2378 PF13307 Helicase C-terminal domain Vc3S01_2380 PF01842 ACT domain Vc3S01_2380 PF00551 Formyl transferase Vc3S01_2381 PF00089 Trypsin Vc3S01_2383 PF06185 YecM protein Vc3S01_2384 PF00750 tRNA synthetases class I (R) Vc3S01_2384 PF05746 DALR anticodon binding domain Vc3S01_2384 PF03485 Arginyl tRNA synthetase N terminal domain Vc3S01_2388 PF07664 Ferrous iron transport protein B C terminus Vc3S01_2388 PF07670 Nucleoside recognition Vc3S01_2388 PF02421 Ferrous iron transport protein B Vc3S01_2388 PF17910 FeoB cytosolic helical domain Vc3S01_2389 PF04023 FeoA domain Vc3S01_2390 PF12833 Helix-turn-helix domain Vc3S01_2390 PF02311 AraC-like ligand binding domain Vc3S01_2391 PF01297 Zinc-uptake complex component A periplasmic Vc3S01_2392 PF00005 ABC transporter Vc3S01_2393 PF00950 ABC 3 transport family Vc3S01_2394 PF00549 CoA-ligase Vc3S01_2394 PF02629 CoA binding domain Vc3S01_2395 PF00549 CoA-ligase Vc3S01_2395 PF08442 ATP-grasp domain Vc3S01_2396 PF02817 e3 binding domain Vc3S01_2396 PF00364 Biotin-requiring enzyme Vc3S01_2396 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Vc3S01_2397 PF16078 2-oxoglutarate dehydrogenase N-terminus Vc3S01_2397 PF00676 Dehydrogenase E1 component Vc3S01_2397 PF16870 2-oxoglutarate dehydrogenase C-terminal Vc3S01_2397 PF02779 Transketolase, pyrimidine binding domain Vc3S01_2398 PF13085 2Fe-2S iron-sulfur cluster binding domain Vc3S01_2399 PF00890 FAD binding domain Vc3S01_2399 PF02910 Fumarate reductase flavoprotein C-term Vc3S01_2400 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Vc3S01_2401 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Vc3S01_2402 PF00285 Citrate synthase, C-terminal domain Vc3S01_2403 PF01784 NIF3 (NGG1p interacting factor 3) Vc3S01_2405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Vc3S01_2405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Vc3S01_2405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Vc3S01_2405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Vc3S01_2407 PF00561 alpha/beta hydrolase fold Vc3S01_2409 PF00258 Flavodoxin Vc3S01_2411 PF01475 Ferric uptake regulator family Vc3S01_2412 PF08334 Type II secretion system (T2SS), protein G Vc3S01_2412 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_2413 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Vc3S01_2413 PF00749 tRNA synthetases class I (E and Q), catalytic domain Vc3S01_2414 PF02378 Phosphotransferase system, EIIC Vc3S01_2414 PF00367 phosphotransferase system, EIIB Vc3S01_2414 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Vc3S01_2415 PF01979 Amidohydrolase family Vc3S01_2416 PF01047 MarR family Vc3S01_2416 PF00480 ROK family Vc3S01_2417 PF02254 TrkA-N domain Vc3S01_2417 PF00999 Sodium/hydrogen exchanger family Vc3S01_2418 PF13537 Glutamine amidotransferase domain Vc3S01_2418 PF00733 Asparagine synthase Vc3S01_2419 PF02357 Transcription termination factor nusG Vc3S01_2420 PF00854 POT family Vc3S01_2421 PF00762 Ferrochelatase Vc3S01_2422 PF05191 Adenylate kinase, active site lid Vc3S01_2423 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_2423 PF00183 Hsp90 protein Vc3S01_2424 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_2425 PF17323 Trans-membrane regulatory protein ToxS Vc3S01_2428 PF12850 Calcineurin-like phosphoesterase superfamily domain Vc3S01_2432 PF07556 Protein of unknown function (DUF1538) Vc3S01_2433 PF07556 Protein of unknown function (DUF1538) Vc3S01_2434 PF08338 Domain of unknown function (DUF1731) Vc3S01_2434 PF01370 NAD dependent epimerase/dehydratase family Vc3S01_2435 PF00106 short chain dehydrogenase Vc3S01_2437 PF00085 Thioredoxin Vc3S01_2438 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) Vc3S01_2439 PF01270 Glycosyl hydrolases family 8 Vc3S01_2440 PF03170 Bacterial cellulose synthase subunit Vc3S01_2441 PF03552 Cellulose synthase Vc3S01_2441 PF00535 Glycosyl transferase family 2 Vc3S01_2441 PF07238 PilZ domain Vc3S01_2442 PF06564 Cellulose biosynthesis protein BcsQ Vc3S01_2446 PF11658 Cellulose biosynthesis protein BcsG Vc3S01_2447 PF16200 C-terminal region of band_7 Vc3S01_2447 PF01145 SPFH domain / Band 7 family Vc3S01_2452 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Vc3S01_2452 PF00533 BRCA1 C Terminus (BRCT) domain Vc3S01_2452 PF12826 Helix-hairpin-helix motif Vc3S01_2452 PF03120 NAD-dependent DNA ligase OB-fold domain Vc3S01_2452 PF01653 NAD-dependent DNA ligase adenylation domain Vc3S01_2453 PF04354 ZipA, C-terminal FtsZ-binding domain Vc3S01_2455 PF00291 Pyridoxal-phosphate dependent enzyme Vc3S01_2456 PF00381 PTS HPr component phosphorylation site Vc3S01_2457 PF00391 PEP-utilising enzyme, mobile domain Vc3S01_2457 PF05524 PEP-utilising enzyme, N-terminal Vc3S01_2457 PF02896 PEP-utilising enzyme, TIM barrel domain Vc3S01_2458 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Vc3S01_2459 PF00700 Bacterial flagellin C-terminal helical region Vc3S01_2459 PF07196 Flagellin hook IN motif Vc3S01_2459 PF00669 Bacterial flagellin N-terminal helical region Vc3S01_2460 PF00700 Bacterial flagellin C-terminal helical region Vc3S01_2460 PF00669 Bacterial flagellin N-terminal helical region Vc3S01_2460 PF07196 Flagellin hook IN motif Vc3S01_2461 PF00669 Bacterial flagellin N-terminal helical region Vc3S01_2461 PF07196 Flagellin hook IN motif Vc3S01_2461 PF00700 Bacterial flagellin C-terminal helical region Vc3S01_2464 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_2464 PF07196 Flagellin hook IN motif Vc3S01_2465 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Vc3S01_2465 PF10135 Rod binding protein Vc3S01_2466 PF02119 Flagellar P-ring protein Vc3S01_2467 PF02107 Flagellar L-ring protein Vc3S01_2468 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_2468 PF00460 Flagella basal body rod protein Vc3S01_2469 PF00460 Flagella basal body rod protein Vc3S01_2469 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_2471 PF00460 Flagella basal body rod protein Vc3S01_2471 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_2471 PF07559 Flagellar basal body protein FlaE Vc3S01_2472 PF13860 FlgD Ig-like domain Vc3S01_2472 PF13861 FlgD Tudor-like domain Vc3S01_2472 PF03963 Flagellar hook capping protein - N-terminal region Vc3S01_2473 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_2473 PF00460 Flagella basal body rod protein Vc3S01_2474 PF00460 Flagella basal body rod protein Vc3S01_2475 PF03705 CheR methyltransferase, all-alpha domain Vc3S01_2475 PF01739 CheR methyltransferase, SAM binding domain Vc3S01_2476 PF01584 CheW-like domain Vc3S01_2476 PF00072 Response regulator receiver domain Vc3S01_2484 PF01389 OmpA-like transmembrane domain Vc3S01_2484 PF00691 OmpA family Vc3S01_2486 PF00749 tRNA synthetases class I (E and Q), catalytic domain Vc3S01_2487 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Vc3S01_2488 PF13609 Gram-negative porin Vc3S01_2489 PF00403 Heavy-metal-associated domain Vc3S01_2492 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain Vc3S01_2492 PF02838 Glycosyl hydrolase family 20, domain 2 Vc3S01_2492 PF00728 Glycosyl hydrolase family 20, catalytic domain Vc3S01_2492 PF03173 Putative carbohydrate binding domain Vc3S01_2496 PF01713 Smr domain Vc3S01_2497 PF00849 RNA pseudouridylate synthase Vc3S01_2497 PF01479 S4 domain Vc3S01_2498 PF04073 Aminoacyl-tRNA editing domain Vc3S01_2499 PF02872 5'-nucleotidase, C-terminal domain Vc3S01_2499 PF00149 Calcineurin-like phosphoesterase Vc3S01_2500 PF00793 DAHP synthetase I family Vc3S01_2501 PF13369 Transglutaminase-like superfamily Vc3S01_2502 PF04247 Invasion gene expression up-regulator, SirB Vc3S01_2503 PF17827 PrmC N-terminal domain Vc3S01_2503 PF13847 Methyltransferase domain Vc3S01_2504 PF03462 PCRF domain Vc3S01_2504 PF00472 RF-1 domain Vc3S01_2505 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Vc3S01_2505 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Vc3S01_2505 PF01488 Shikimate / quinate 5-dehydrogenase Vc3S01_2506 PF03550 Outer membrane lipoprotein LolB Vc3S01_2507 PF08544 GHMP kinases C terminal Vc3S01_2507 PF00288 GHMP kinases N terminal domain Vc3S01_2508 PF14572 Phosphoribosyl synthetase-associated domain Vc3S01_2508 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Vc3S01_2509 PF01195 Peptidyl-tRNA hydrolase Vc3S01_2510 PF06071 Protein of unknown function (DUF933) Vc3S01_2510 PF01926 50S ribosome-binding GTPase Vc3S01_2512 PF01494 FAD binding domain Vc3S01_2513 PF01938 TRAM domain Vc3S01_2513 PF04055 Radical SAM superfamily Vc3S01_2513 PF00919 Uncharacterized protein family UPF0004 Vc3S01_2514 PF02562 PhoH-like protein Vc3S01_2515 PF02130 Uncharacterized protein family UPF0054 Vc3S01_2516 PF03471 Transporter associated domain Vc3S01_2516 PF00571 CBS domain Vc3S01_2517 PF00795 Carbon-nitrogen hydrolase Vc3S01_2518 PF07295 Zinc-ribbon containing domain Vc3S01_2519 PF00133 tRNA synthetases class I (I, L, M and V) Vc3S01_2519 PF13603 Leucyl-tRNA synthetase, Domain 2 Vc3S01_2519 PF08264 Anticodon-binding domain of tRNA Vc3S01_2520 PF04390 Lipopolysaccharide-assembly Vc3S01_2521 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Vc3S01_2521 PF06144 DNA polymerase III, delta subunit Vc3S01_2523 PF02590 Predicted SPOUT methyltransferase Vc3S01_2524 PF00905 Penicillin binding protein transpeptidase domain Vc3S01_2524 PF03717 Penicillin-binding Protein dimerisation domain Vc3S01_2525 PF01098 Cell cycle protein Vc3S01_2526 PF03330 Lytic transglycolase Vc3S01_2526 PF05036 Sporulation related domain Vc3S01_2527 PF07943 Penicillin-binding protein 5, C-terminal domain Vc3S01_2527 PF00768 D-alanyl-D-alanine carboxypeptidase Vc3S01_2528 PF04359 Protein of unknown function (DUF493) Vc3S01_2529 PF03099 Biotin/lipoate A/B protein ligase family Vc3S01_2530 PF04055 Radical SAM superfamily Vc3S01_2530 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Vc3S01_2531 PF00464 Serine hydroxymethyltransferase Vc3S01_2532 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Vc3S01_2532 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Vc3S01_2535 PF16657 Maltogenic Amylase, C-terminal domain Vc3S01_2535 PF00128 Alpha amylase, catalytic domain Vc3S01_2536 PF00367 phosphotransferase system, EIIB Vc3S01_2536 PF02378 Phosphotransferase system, EIIC Vc3S01_2537 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_2539 PF09383 NIL domain Vc3S01_2539 PF00005 ABC transporter Vc3S01_2540 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2541 PF03180 NLPA lipoprotein Vc3S01_2543 PF00149 Calcineurin-like phosphoesterase Vc3S01_2543 PF02872 5'-nucleotidase, C-terminal domain Vc3S01_2544 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) Vc3S01_2545 PF07348 Syd protein (SUKH-2) Vc3S01_2546 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Vc3S01_2546 PF14489 QueF-like protein Vc3S01_2548 PF00072 Response regulator receiver domain Vc3S01_2548 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_2549 PF11892 Domain of unknown function (DUF3412) Vc3S01_2549 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Vc3S01_2549 PF03641 Possible lysine decarboxylase Vc3S01_2550 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Vc3S01_2550 PF01367 5'-3' exonuclease, C-terminal SAM fold Vc3S01_2551 PF01223 DNA/RNA non-specific endonuclease Vc3S01_2552 PF01728 FtsJ-like methyltransferase Vc3S01_2552 PF18125 RlmM ferredoxin-like domain Vc3S01_2553 PF04241 Protein of unknown function (DUF423) Vc3S01_2555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2555 PF03466 LysR substrate binding domain Vc3S01_2556 PF02568 Thiamine biosynthesis protein (ThiI) Vc3S01_2556 PF02926 THUMP domain Vc3S01_2557 PF00691 OmpA family Vc3S01_2557 PF13677 Membrane MotB of proton-channel complex MotA/MotB Vc3S01_2558 PF01618 MotA/TolQ/ExbB proton channel family Vc3S01_2559 PF02609 Exonuclease VII small subunit Vc3S01_2560 PF00348 Polyprenyl synthetase Vc3S01_2561 PF02779 Transketolase, pyrimidine binding domain Vc3S01_2561 PF02780 Transketolase, C-terminal domain Vc3S01_2561 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Vc3S01_2562 PF04608 Phosphatidylglycerophosphatase A Vc3S01_2563 PF02769 AIR synthase related protein, C-terminal domain Vc3S01_2563 PF00586 AIR synthase related protein, N-terminal domain Vc3S01_2564 PF01029 NusB family Vc3S01_2565 PF00885 6,7-dimethyl-8-ribityllumazine synthase Vc3S01_2566 PF00925 GTP cyclohydrolase II Vc3S01_2566 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Vc3S01_2567 PF00677 Lumazine binding domain Vc3S01_2568 PF01872 RibD C-terminal domain Vc3S01_2568 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Vc3S01_2569 PF03477 ATP cone domain Vc3S01_2570 PF00171 Aldehyde dehydrogenase family Vc3S01_2571 PF01472 PUA domain Vc3S01_2571 PF00696 Amino acid kinase family Vc3S01_2572 PF07417 Sigma factor-binding transcriptional regulator Crl Vc3S01_2574 PF00156 Phosphoribosyl transferase domain Vc3S01_2576 PF00860 Permease family Vc3S01_2577 PF07687 Peptidase dimerisation domain Vc3S01_2577 PF01546 Peptidase family M20/M25/M40 Vc3S01_2582 PF02769 AIR synthase related protein, C-terminal domain Vc3S01_2582 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Vc3S01_2582 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Vc3S01_2583 PF01464 Transglycosylase SLT domain Vc3S01_2583 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_2585 PF14437 MafB19-like deaminase Vc3S01_2586 PF03806 AbgT putative transporter family Vc3S01_2590 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_2590 PF00114 Pilin (bacterial filament) Vc3S01_2591 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_2591 PF00114 Pilin (bacterial filament) Vc3S01_2592 PF00226 DnaJ domain Vc3S01_2592 PF01556 DnaJ C terminal domain Vc3S01_2592 PF00684 DnaJ central domain Vc3S01_2593 PF00012 Hsp70 protein Vc3S01_2594 PF00375 Sodium:dicarboxylate symporter family Vc3S01_2595 PF01025 GrpE Vc3S01_2596 PF01513 ATP-NAD kinase Vc3S01_2597 PF02463 RecF/RecN/SMC N terminal domain Vc3S01_2598 PF04355 SmpA / OmlA family Vc3S01_2599 PF03658 RnfH family Ubiquitin Vc3S01_2600 PF03364 Polyketide cyclase / dehydrase and lipid transport Vc3S01_2601 PF01668 SmpB protein Vc3S01_2602 PF03466 LysR substrate binding domain Vc3S01_2602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2603 PF12805 FUSC-like inner membrane protein yccS Vc3S01_2607 PF00202 Aminotransferase class-III Vc3S01_2609 PF07969 Amidohydrolase family Vc3S01_2610 PF00924 Mechanosensitive ion channel Vc3S01_2613 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_2613 PF12729 Four helix bundle sensory module for signal transduction Vc3S01_2613 PF00672 HAMP domain Vc3S01_2614 PF03466 LysR substrate binding domain Vc3S01_2614 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2615 PF01266 FAD dependent oxidoreductase Vc3S01_2616 PF01235 Sodium:alanine symporter family Vc3S01_2617 PF01184 GPR1/FUN34/yaaH family Vc3S01_2618 PF00704 Glycosyl hydrolases family 18 Vc3S01_2618 PF06483 Chitinase C Vc3S01_2619 PF03553 Na+/H+ antiporter family Vc3S01_2620 PF02540 NAD synthase Vc3S01_2620 PF00117 Glutamine amidotransferase class-I Vc3S01_2620 PF00958 GMP synthase C terminal domain Vc3S01_2621 PF00571 CBS domain Vc3S01_2621 PF00478 IMP dehydrogenase / GMP reductase domain Vc3S01_2622 PF02601 Exonuclease VII, large subunit Vc3S01_2622 PF13742 OB-fold nucleic acid binding domain Vc3S01_2624 PF13185 GAF domain Vc3S01_2624 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_2626 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Vc3S01_2626 PF01926 50S ribosome-binding GTPase Vc3S01_2627 PF13360 PQQ-like domain Vc3S01_2628 PF09976 Tetratricopeptide repeat-like domain Vc3S01_2629 PF03129 Anticodon binding domain Vc3S01_2629 PF13393 Histidyl-tRNA synthetase Vc3S01_2630 PF04551 GcpE protein Vc3S01_2631 PF13464 Domain of unknown function (DUF4115) Vc3S01_2632 PF04055 Radical SAM superfamily Vc3S01_2633 PF00334 Nucleoside diphosphate kinase Vc3S01_2634 PF00883 Cytosol aminopeptidase family, catalytic domain Vc3S01_2634 PF12404 Peptidase Vc3S01_2635 PF04384 Iron-sulphur cluster assembly Vc3S01_2636 PF00111 2Fe-2S iron-sulfur cluster binding domain Vc3S01_2637 PF00012 Hsp70 protein Vc3S01_2638 PF07743 HSCB C-terminal oligomerisation domain Vc3S01_2638 PF00226 DnaJ domain Vc3S01_2639 PF01521 Iron-sulphur cluster biosynthesis Vc3S01_2640 PF01592 NifU-like N terminal domain Vc3S01_2641 PF00266 Aminotransferase class-V Vc3S01_2642 PF02082 Transcriptional regulator Vc3S01_2643 PF00588 SpoU rRNA Methylase family Vc3S01_2644 PF00459 Inositol monophosphatase family Vc3S01_2645 PF07549 SecD/SecF GG Motif Vc3S01_2645 PF02355 Protein export membrane protein Vc3S01_2646 PF13721 SecD export protein N-terminal TM region Vc3S01_2646 PF02355 Protein export membrane protein Vc3S01_2646 PF07549 SecD/SecF GG Motif Vc3S01_2647 PF02699 Preprotein translocase subunit Vc3S01_2648 PF01702 Queuine tRNA-ribosyltransferase Vc3S01_2649 PF02547 Queuosine biosynthesis protein Vc3S01_2653 PF00571 CBS domain Vc3S01_2654 PF00463 Isocitrate lyase family Vc3S01_2655 PF01274 Malate synthase Vc3S01_2656 PF03466 LysR substrate binding domain Vc3S01_2656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2657 PF10417 C-terminal domain of 1-Cys peroxiredoxin Vc3S01_2657 PF00578 AhpC/TSA family Vc3S01_2658 PF03932 CutC family Vc3S01_2659 PF03976 Polyphosphate kinase 2 (PPK2) Vc3S01_2660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2660 PF03466 LysR substrate binding domain Vc3S01_2663 PF01895 PhoU domain Vc3S01_2664 PF00005 ABC transporter Vc3S01_2665 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2666 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2667 PF13090 Polyphosphate kinase C-terminal domain 2 Vc3S01_2667 PF02503 Polyphosphate kinase middle domain Vc3S01_2667 PF13089 Polyphosphate kinase N-terminal domain Vc3S01_2667 PF17941 Polyphosphate kinase C-terminal domain 1 Vc3S01_2668 PF02541 Ppx/GppA phosphatase family Vc3S01_2669 PF12849 PBP superfamily domain Vc3S01_2670 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_2670 PF11808 Phosphate regulon sensor protein PhoR Vc3S01_2670 PF00989 PAS fold Vc3S01_2670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_2671 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_2671 PF00072 Response regulator receiver domain Vc3S01_2672 PF04381 Putative exonuclease, RdgC Vc3S01_2674 PF00037 4Fe-4S binding domain Vc3S01_2676 PF03411 Penicillin-insensitive murein endopeptidase Vc3S01_2681 PF07724 AAA domain (Cdc48 subfamily) Vc3S01_2681 PF17871 AAA lid domain Vc3S01_2681 PF10431 C-terminal, D2-small domain, of ClpB protein Vc3S01_2681 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_2681 PF02861 Clp amino terminal domain, pathogenicity island component Vc3S01_2683 PF00849 RNA pseudouridylate synthase Vc3S01_2683 PF01479 S4 domain Vc3S01_2684 PF13525 Outer membrane lipoprotein Vc3S01_2685 PF01464 Transglycosylase SLT domain Vc3S01_2686 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Vc3S01_2687 PF00800 Prephenate dehydratase Vc3S01_2687 PF01817 Chorismate mutase type II Vc3S01_2688 PF01931 Protein of unknown function DUF84 Vc3S01_2689 PF01371 Trp repressor protein Vc3S01_2690 PF01464 Transglycosylase SLT domain Vc3S01_2690 PF14718 Soluble lytic murein transglycosylase L domain Vc3S01_2691 PF00005 ABC transporter Vc3S01_2691 PF12848 ABC transporter Vc3S01_2692 PF07238 PilZ domain Vc3S01_2693 PF04225 Opacity-associated protein A LysM-like domain Vc3S01_2693 PF01551 Peptidase family M23 Vc3S01_2694 PF02153 Prephenate dehydrogenase Vc3S01_2694 PF01817 Chorismate mutase type II Vc3S01_2695 PF00793 DAHP synthetase I family Vc3S01_2696 PF00933 Glycosyl hydrolase family 3 N terminal domain Vc3S01_2697 PF03702 Anhydro-N-acetylmuramic acid kinase Vc3S01_2698 PF01380 SIS domain Vc3S01_2702 PF02554 Carbon starvation protein CstA Vc3S01_2703 PF07694 5TMR of 5TMR-LYT Vc3S01_2703 PF06580 Histidine kinase Vc3S01_2704 PF00072 Response regulator receiver domain Vc3S01_2704 PF04397 LytTr DNA-binding domain Vc3S01_2705 PF02401 LytB protein Vc3S01_2706 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Vc3S01_2707 PF01252 Signal peptidase (SPase) II Vc3S01_2708 PF06827 Zinc finger found in FPG and IleRS Vc3S01_2708 PF00133 tRNA synthetases class I (I, L, M and V) Vc3S01_2708 PF08264 Anticodon-binding domain of tRNA Vc3S01_2709 PF01687 Riboflavin kinase Vc3S01_2709 PF06574 FAD synthetase Vc3S01_2710 PF03023 Lipid II flippase MurJ Vc3S01_2711 PF01649 Ribosomal protein S20 Vc3S01_2712 PF01022 Bacterial regulatory protein, arsR family Vc3S01_2713 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2713 PF03466 LysR substrate binding domain Vc3S01_2714 PF02690 Na+/Pi-cotransporter Vc3S01_2715 PF00303 Thymidylate synthase Vc3S01_2716 PF01790 Prolipoprotein diacylglyceryl transferase Vc3S01_2717 PF01925 Sulfite exporter TauE/SafE Vc3S01_2718 PF02896 PEP-utilising enzyme, TIM barrel domain Vc3S01_2718 PF05524 PEP-utilising enzyme, N-terminal Vc3S01_2718 PF00391 PEP-utilising enzyme, mobile domain Vc3S01_2718 PF01590 GAF domain Vc3S01_2719 PF00293 NUDIX domain Vc3S01_2720 PF02976 DNA mismatch repair enzyme MutH Vc3S01_2722 PF00248 Aldo/keto reductase family Vc3S01_2724 PF00072 Response regulator receiver domain Vc3S01_2724 PF02954 Bacterial regulatory protein, Fis family Vc3S01_2724 PF00158 Sigma-54 interaction domain Vc3S01_2725 PF00152 tRNA synthetases class II (D, K and N) Vc3S01_2725 PF01336 OB-fold nucleic acid binding domain Vc3S01_2726 PF03462 PCRF domain Vc3S01_2726 PF00472 RF-1 domain Vc3S01_2727 PF01368 DHH family Vc3S01_2727 PF17768 RecJ OB domain Vc3S01_2727 PF02272 DHHA1 domain Vc3S01_2728 PF10411 Disulfide bond isomerase protein N-terminus Vc3S01_2728 PF13098 Thioredoxin-like domain Vc3S01_2729 PF00589 Phage integrase family Vc3S01_2729 PF02899 Phage integrase, N-terminal SAM-like domain Vc3S01_2730 PF00258 Flavodoxin Vc3S01_2731 PF05525 Branched-chain amino acid transport protein Vc3S01_2732 PF05175 Methyltransferase small domain Vc3S01_2733 PF00271 Helicase conserved C-terminal domain Vc3S01_2733 PF00270 DEAD/DEAH box helicase Vc3S01_2735 PF03883 Peroxide stress protein YaaA Vc3S01_2736 PF01235 Sodium:alanine symporter family Vc3S01_2739 PF03167 Uracil DNA glycosylase superfamily Vc3S01_2740 PF01261 Xylose isomerase-like TIM barrel Vc3S01_2741 PF01228 Glycine radical Vc3S01_2743 PF14821 Threonine synthase N terminus Vc3S01_2743 PF00291 Pyridoxal-phosphate dependent enzyme Vc3S01_2744 PF00288 GHMP kinases N terminal domain Vc3S01_2744 PF08544 GHMP kinases C terminal Vc3S01_2745 PF00742 Homoserine dehydrogenase Vc3S01_2745 PF01842 ACT domain Vc3S01_2745 PF13840 ACT domain Vc3S01_2745 PF03447 Homoserine dehydrogenase, NAD binding domain Vc3S01_2745 PF00696 Amino acid kinase family Vc3S01_2747 PF03737 Aldolase/RraA Vc3S01_2749 PF00072 Response regulator receiver domain Vc3S01_2749 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_2751 PF00989 PAS fold Vc3S01_2751 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_2751 PF00072 Response regulator receiver domain Vc3S01_2751 PF01627 Hpt domain Vc3S01_2751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_2751 PF18415 Histidine kinase receptor ArcB trans-membrane domain Vc3S01_2752 PF00360 Phytochrome region Vc3S01_2752 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_2752 PF00563 EAL domain Vc3S01_2752 PF01590 GAF domain Vc3S01_2753 PF16199 Radical_SAM C-terminal domain Vc3S01_2753 PF04055 Radical SAM superfamily Vc3S01_2754 PF01493 GXGXG motif Vc3S01_2754 PF01645 Conserved region in glutamate synthase Vc3S01_2754 PF04898 Glutamate synthase central domain Vc3S01_2754 PF00310 Glutamine amidotransferases class-II Vc3S01_2755 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Vc3S01_2755 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_2756 PF01645 Conserved region in glutamate synthase Vc3S01_2756 PF00310 Glutamine amidotransferases class-II Vc3S01_2756 PF04898 Glutamate synthase central domain Vc3S01_2756 PF01493 GXGXG motif Vc3S01_2757 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_2757 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Vc3S01_2759 PF01048 Phosphorylase superfamily Vc3S01_2761 PF01497 Periplasmic binding protein Vc3S01_2762 PF03458 UPF0126 domain Vc3S01_2764 PF01925 Sulfite exporter TauE/SafE Vc3S01_2766 PF02142 MGS-like domain Vc3S01_2766 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Vc3S01_2766 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Vc3S01_2767 PF00117 Glutamine amidotransferase class-I Vc3S01_2767 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Vc3S01_2768 PF01113 Dihydrodipicolinate reductase, N-terminus Vc3S01_2768 PF05173 Dihydrodipicolinate reductase, C-terminus Vc3S01_2769 PF00293 NUDIX domain Vc3S01_2770 PF01043 SecA preprotein cross-linking domain Vc3S01_2770 PF07517 SecA DEAD-like domain Vc3S01_2770 PF02810 SEC-C motif Vc3S01_2770 PF07516 SecA Wing and Scaffold domain Vc3S01_2772 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Vc3S01_2773 PF12327 FtsZ family, C-terminal domain Vc3S01_2773 PF00091 Tubulin/FtsZ family, GTPase domain Vc3S01_2774 PF02491 SHS2 domain inserted in FTSA Vc3S01_2775 PF03799 Cell division protein FtsQ Vc3S01_2775 PF08478 POTRA domain, FtsQ-type Vc3S01_2776 PF01225 Mur ligase family, catalytic domain Vc3S01_2776 PF08245 Mur ligase middle domain Vc3S01_2776 PF02875 Mur ligase family, glutamate ligase domain Vc3S01_2777 PF03033 Glycosyltransferase family 28 N-terminal domain Vc3S01_2777 PF04101 Glycosyltransferase family 28 C-terminal domain Vc3S01_2778 PF01098 Cell cycle protein Vc3S01_2779 PF02875 Mur ligase family, glutamate ligase domain Vc3S01_2779 PF08245 Mur ligase middle domain Vc3S01_2780 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Vc3S01_2780 PF00953 Glycosyl transferase family 4 Vc3S01_2781 PF08245 Mur ligase middle domain Vc3S01_2781 PF02875 Mur ligase family, glutamate ligase domain Vc3S01_2781 PF01225 Mur ligase family, catalytic domain Vc3S01_2782 PF08245 Mur ligase middle domain Vc3S01_2782 PF01225 Mur ligase family, catalytic domain Vc3S01_2782 PF02875 Mur ligase family, glutamate ligase domain Vc3S01_2783 PF03717 Penicillin-binding Protein dimerisation domain Vc3S01_2783 PF00905 Penicillin binding protein transpeptidase domain Vc3S01_2784 PF04999 Cell division protein FtsL Vc3S01_2785 PF01795 MraW methylase family Vc3S01_2786 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Vc3S01_2787 PF04348 LppC putative lipoprotein Vc3S01_2788 PF02021 Uncharacterised protein family UPF0102 Vc3S01_2789 PF13580 SIS domain Vc3S01_2790 PF04972 BON domain Vc3S01_2791 PF04386 Stringent starvation protein B Vc3S01_2792 PF02798 Glutathione S-transferase, N-terminal domain Vc3S01_2792 PF00043 Glutathione S-transferase, C-terminal domain Vc3S01_2793 PF02167 Cytochrome C1 family Vc3S01_2794 PF00032 Cytochrome b(C-terminal)/b6/petD Vc3S01_2794 PF00033 Cytochrome b/b6/petB Vc3S01_2795 PF00355 Rieske [2Fe-2S] domain Vc3S01_2795 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Vc3S01_2796 PF00380 Ribosomal protein S9/S16 Vc3S01_2797 PF00572 Ribosomal protein L13 Vc3S01_2798 PF03969 AFG1-like ATPase Vc3S01_2799 PF06295 Protein of unknown function (DUF1043) Vc3S01_2800 PF00595 PDZ domain Vc3S01_2801 PF13180 PDZ domain Vc3S01_2802 PF00521 DNA gyrase/topoisomerase IV, subunit A Vc3S01_2802 PF03989 DNA gyrase C-terminal domain, beta-propeller Vc3S01_2803 PF00986 DNA gyrase B subunit, carboxyl terminus Vc3S01_2803 PF00204 DNA gyrase B Vc3S01_2803 PF01751 Toprim domain Vc3S01_2803 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_2804 PF05728 Uncharacterised protein family (UPF0227) Vc3S01_2805 PF00149 Calcineurin-like phosphoesterase Vc3S01_2806 PF06853 Protein of unknown function (DUF1249) Vc3S01_2807 PF00293 NUDIX domain Vc3S01_2808 PF02321 Outer membrane efflux protein Vc3S01_2809 PF00294 pfkB family carbohydrate kinase Vc3S01_2809 PF01467 Cytidylyltransferase-like Vc3S01_2810 PF08335 GlnD PII-uridylyltransferase Vc3S01_2810 PF03710 Glutamate-ammonia ligase adenylyltransferase Vc3S01_2811 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_2811 PF02743 Cache domain Vc3S01_2811 PF00672 HAMP domain Vc3S01_2812 PF07885 Ion channel Vc3S01_2813 PF01928 CYTH domain Vc3S01_2814 PF01865 Protein of unknown function DUF47 Vc3S01_2815 PF01384 Phosphate transporter family Vc3S01_2816 PF08239 Bacterial SH3 domain Vc3S01_2819 PF01471 Putative peptidoglycan binding domain Vc3S01_2819 PF13401 AAA domain Vc3S01_2820 PF01966 HD domain Vc3S01_2820 PF01743 Poly A polymerase head domain Vc3S01_2820 PF12627 Probable RNA and SrmB- binding site of polymerase A Vc3S01_2821 PF02673 Bacitracin resistance protein BacA Vc3S01_2822 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Vc3S01_2823 PF02152 Dihydroneopterin aldolase Vc3S01_2824 PF02660 Glycerol-3-phosphate acyltransferase Vc3S01_2825 PF12697 Alpha/beta hydrolase family Vc3S01_2826 PF00814 Glycoprotease family Vc3S01_2827 PF01165 Ribosomal protein S21 Vc3S01_2828 PF09424 Yqey-like protein Vc3S01_2829 PF08278 DNA primase DnaG DnaB-binding Vc3S01_2829 PF10410 DnaB-helicase binding domain of primase Vc3S01_2829 PF01807 CHC2 zinc finger Vc3S01_2829 PF08275 DNA primase catalytic core, N-terminal domain Vc3S01_2830 PF04546 Sigma-70, non-essential region Vc3S01_2830 PF03979 Sigma-70 factor, region 1.1 Vc3S01_2830 PF00140 Sigma-70 factor, region 1.2 Vc3S01_2830 PF04542 Sigma-70 region 2 Vc3S01_2830 PF04539 Sigma-70 region 3 Vc3S01_2830 PF04545 Sigma-70, region 4 Vc3S01_2836 PF02378 Phosphotransferase system, EIIC Vc3S01_2836 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Vc3S01_2836 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Vc3S01_2837 PF08125 Mannitol dehydrogenase C-terminal domain Vc3S01_2837 PF01232 Mannitol dehydrogenase Rossmann domain Vc3S01_2838 PF05068 Mannitol repressor Vc3S01_2839 PF13419 Haloacid dehalogenase-like hydrolase Vc3S01_2840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_2840 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_2840 PF00672 HAMP domain Vc3S01_2841 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_2841 PF00072 Response regulator receiver domain Vc3S01_2844 PF01380 SIS domain Vc3S01_2845 PF08220 DeoR-like helix-turn-helix domain Vc3S01_2845 PF00455 DeoR C terminal sensor domain Vc3S01_2846 PF02887 Pyruvate kinase, alpha/beta domain Vc3S01_2846 PF00224 Pyruvate kinase, barrel domain Vc3S01_2848 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_2848 PF17158 Membrane-associated sensor, integral membrane domain Vc3S01_2849 PF10369 Small subunit of acetolactate synthase Vc3S01_2850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Vc3S01_2850 PF00205 Thiamine pyrophosphate enzyme, central domain Vc3S01_2850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Vc3S01_2851 PF00501 AMP-binding enzyme Vc3S01_2852 PF03466 LysR substrate binding domain Vc3S01_2852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_2854 PF01569 PAP2 superfamily Vc3S01_2857 PF00682 HMGL-like Vc3S01_2857 PF08502 LeuA allosteric (dimerisation) domain Vc3S01_2858 PF00180 Isocitrate/isopropylmalate dehydrogenase Vc3S01_2859 PF00330 Aconitase family (aconitate hydratase) Vc3S01_2860 PF00694 Aconitase C-terminal domain Vc3S01_2862 PF00226 DnaJ domain Vc3S01_2862 PF05099 Tellurite resistance protein TerB Vc3S01_2863 PF04453 LPS transport system D Vc3S01_2863 PF03968 OstA-like protein Vc3S01_2864 PF09312 SurA N-terminal domain Vc3S01_2865 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Vc3S01_2866 PF00398 Ribosomal RNA adenine dimethylase Vc3S01_2867 PF04379 ApaG domain Vc3S01_2868 PF00149 Calcineurin-like phosphoesterase Vc3S01_2869 PF00186 Dihydrofolate reductase Vc3S01_2870 PF12821 Threonine/Serine exporter, ThrE Vc3S01_2871 PF06738 Putative threonine/serine exporter Vc3S01_2872 PF01018 GTP1/OBG Vc3S01_2872 PF01926 50S ribosome-binding GTPase Vc3S01_2873 PF01016 Ribosomal L27 protein Vc3S01_2874 PF00829 Ribosomal prokaryotic L21 protein Vc3S01_2875 PF00348 Polyprenyl synthetase Vc3S01_2877 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Vc3S01_2877 PF00056 lactate/malate dehydrogenase, NAD binding domain Vc3S01_2878 PF01316 Arginine repressor, DNA binding domain Vc3S01_2878 PF02863 Arginine repressor, C-terminal domain Vc3S01_2879 PF16868 NMT1-like family Vc3S01_2882 PF00005 ABC transporter Vc3S01_2883 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_2885 PF02441 Flavoprotein Vc3S01_2886 PF01225 Mur ligase family, catalytic domain Vc3S01_2886 PF02875 Mur ligase family, glutamate ligase domain Vc3S01_2886 PF08245 Mur ligase middle domain Vc3S01_2887 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Vc3S01_2888 PF00719 Inorganic pyrophosphatase Vc3S01_2891 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like Vc3S01_2892 PF04357 TamB, inner membrane protein subunit of TAM complex Vc3S01_2893 PF01103 Surface antigen Vc3S01_2893 PF07244 Surface antigen variable number repeat Vc3S01_2893 PF17243 POTRA domain TamA domain 1 Vc3S01_2894 PF01625 Peptide methionine sulfoxide reductase Vc3S01_2896 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) Vc3S01_2897 PF10795 Protein of unknown function (DUF2607) Vc3S01_2899 PF00005 ABC transporter Vc3S01_2904 PF03600 Citrate transporter Vc3S01_2904 PF02080 TrkA-C domain Vc3S01_2905 PF00009 Elongation factor Tu GTP binding domain Vc3S01_2906 PF01507 Phosphoadenosine phosphosulfate reductase family Vc3S01_2907 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Vc3S01_2907 PF14824 Sirohaem biosynthesis protein central Vc3S01_2907 PF10414 Sirohaem synthase dimerisation region Vc3S01_2908 PF02872 5'-nucleotidase, C-terminal domain Vc3S01_2908 PF00149 Calcineurin-like phosphoesterase Vc3S01_2910 PF00271 Helicase conserved C-terminal domain Vc3S01_2910 PF00270 DEAD/DEAH box helicase Vc3S01_2910 PF03880 DbpA RNA binding domain Vc3S01_2911 PF13673 Acetyltransferase (GNAT) domain Vc3S01_2914 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Vc3S01_2914 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Vc3S01_2916 PF01196 Ribosomal protein L17 Vc3S01_2917 PF01000 RNA polymerase Rpb3/RpoA insert domain Vc3S01_2917 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Vc3S01_2917 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Vc3S01_2918 PF00163 Ribosomal protein S4/S9 N-terminal domain Vc3S01_2918 PF01479 S4 domain Vc3S01_2919 PF00411 Ribosomal protein S11 Vc3S01_2920 PF00416 Ribosomal protein S13/S18 Vc3S01_2921 PF00444 Ribosomal protein L36 Vc3S01_2922 PF00344 SecY translocase Vc3S01_2923 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Vc3S01_2924 PF00327 Ribosomal protein L30p/L7e Vc3S01_2925 PF03719 Ribosomal protein S5, C-terminal domain Vc3S01_2925 PF00333 Ribosomal protein S5, N-terminal domain Vc3S01_2926 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Vc3S01_2927 PF00347 Ribosomal protein L6 Vc3S01_2928 PF00410 Ribosomal protein S8 Vc3S01_2929 PF00253 Ribosomal protein S14p/S29e Vc3S01_2930 PF00673 ribosomal L5P family C-terminus Vc3S01_2930 PF00281 Ribosomal protein L5 Vc3S01_2931 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Vc3S01_2931 PF00467 KOW motif Vc3S01_2932 PF00238 Ribosomal protein L14p/L23e Vc3S01_2933 PF00366 Ribosomal protein S17 Vc3S01_2934 PF00831 Ribosomal L29 protein Vc3S01_2935 PF00252 Ribosomal protein L16p/L10e Vc3S01_2936 PF07650 KH domain Vc3S01_2936 PF00189 Ribosomal protein S3, C-terminal domain Vc3S01_2937 PF00237 Ribosomal protein L22p/L17e Vc3S01_2938 PF00203 Ribosomal protein S19 Vc3S01_2939 PF03947 Ribosomal Proteins L2, C-terminal domain Vc3S01_2939 PF00181 Ribosomal Proteins L2, RNA binding domain Vc3S01_2940 PF00276 Ribosomal protein L23 Vc3S01_2941 PF00573 Ribosomal protein L4/L1 family Vc3S01_2942 PF00297 Ribosomal protein L3 Vc3S01_2943 PF00338 Ribosomal protein S10p/S20e Vc3S01_2944 PF01197 Ribosomal protein L31 Vc3S01_2945 PF00270 DEAD/DEAH box helicase Vc3S01_2945 PF00271 Helicase conserved C-terminal domain Vc3S01_2945 PF17764 3′ DNA-binding domain (3′BD) Vc3S01_2945 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Vc3S01_2945 PF18074 Primosomal protein N C-terminal domain Vc3S01_2946 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_2948 PF00227 Proteasome subunit Vc3S01_2949 PF07724 AAA domain (Cdc48 subfamily) Vc3S01_2949 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_2950 PF01040 UbiA prenyltransferase family Vc3S01_2951 PF03737 Aldolase/RraA Vc3S01_2952 PF06005 Cell division protein ZapB Vc3S01_2953 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Vc3S01_2954 PF00455 DeoR C terminal sensor domain Vc3S01_2954 PF08220 DeoR-like helix-turn-helix domain Vc3S01_2958 PF00121 Triosephosphate isomerase Vc3S01_2959 PF00483 Nucleotidyl transferase Vc3S01_2960 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Vc3S01_2960 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Vc3S01_2960 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Vc3S01_2962 PF00483 Nucleotidyl transferase Vc3S01_2965 PF00535 Glycosyl transferase family 2 Vc3S01_2966 PF00535 Glycosyl transferase family 2 Vc3S01_2970 PF00535 Glycosyl transferase family 2 Vc3S01_2971 PF00953 Glycosyl transferase family 4 Vc3S01_2972 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Vc3S01_2972 PF00753 Metallo-beta-lactamase superfamily Vc3S01_2972 PF10996 Beta-Casp domain Vc3S01_2973 PF02397 Bacterial sugar transferase Vc3S01_2975 PF00535 Glycosyl transferase family 2 Vc3S01_2976 PF00535 Glycosyl transferase family 2 Vc3S01_2979 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Vc3S01_2980 PF14667 Polysaccharide biosynthesis C-terminal domain Vc3S01_2980 PF01943 Polysaccharide biosynthesis protein Vc3S01_2981 PF00483 Nucleotidyl transferase Vc3S01_2982 PF16363 GDP-mannose 4,6 dehydratase Vc3S01_2986 PF02563 Polysaccharide biosynthesis/export protein Vc3S01_2986 PF10531 SLBB domain Vc3S01_2986 PF18412 Outer-membrane lipoprotein Wza C-terminal domain Vc3S01_2989 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF Vc3S01_2991 PF06082 Exopolysaccharide biosynthesis protein YbjH Vc3S01_2992 PF01370 NAD dependent epimerase/dehydratase family Vc3S01_2993 PF03279 Bacterial lipid A biosynthesis acyltransferase Vc3S01_2994 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Vc3S01_2995 PF13439 Glycosyltransferase Family 4 Vc3S01_2995 PF00534 Glycosyl transferases group 1 Vc3S01_2996 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Vc3S01_2997 PF00535 Glycosyl transferase family 2 Vc3S01_2997 PF01501 Glycosyl transferase family 8 Vc3S01_2998 PF04230 Polysaccharide pyruvyl transferase Vc3S01_3000 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Vc3S01_3001 PF00535 Glycosyl transferase family 2 Vc3S01_3002 PF13439 Glycosyltransferase Family 4 Vc3S01_3002 PF00534 Glycosyl transferases group 1 Vc3S01_3003 PF01467 Cytidylyltransferase-like Vc3S01_3004 PF05686 Glycosyl transferase family 90 Vc3S01_3005 PF01219 Prokaryotic diacylglycerol kinase Vc3S01_3006 PF06827 Zinc finger found in FPG and IleRS Vc3S01_3006 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Vc3S01_3006 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Vc3S01_3008 PF00471 Ribosomal protein L33 Vc3S01_3009 PF00830 Ribosomal L28 family Vc3S01_3010 PF04002 RadC-like JAB domain Vc3S01_3011 PF02743 Cache domain Vc3S01_3011 PF00672 HAMP domain Vc3S01_3011 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_3012 PF02441 Flavoprotein Vc3S01_3012 PF04127 DNA / pantothenate metabolism flavoprotein Vc3S01_3013 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_3014 PF03279 Bacterial lipid A biosynthesis acyltransferase Vc3S01_3016 PF01138 3' exoribonuclease family, domain 1 Vc3S01_3016 PF03725 3' exoribonuclease family, domain 2 Vc3S01_3017 PF03755 YicC-like family, N-terminal region Vc3S01_3017 PF08340 Domain of unknown function (DUF1732) Vc3S01_3018 PF00892 EamA-like transporter family Vc3S01_3021 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_3021 PF00005 ABC transporter Vc3S01_3022 PF00005 ABC transporter Vc3S01_3022 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_3023 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_3024 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_3024 PF12911 N-terminal TM domain of oligopeptide transport permease C Vc3S01_3025 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_3026 PF07715 TonB-dependent Receptor Plug Domain Vc3S01_3026 PF00593 TonB dependent receptor Vc3S01_3029 PF01618 MotA/TolQ/ExbB proton channel family Vc3S01_3030 PF02472 Biopolymer transport protein ExbD/TolR Vc3S01_3033 PF00625 Guanylate kinase Vc3S01_3034 PF01192 RNA polymerase Rpb6 Vc3S01_3035 PF04607 Region found in RelA / SpoT proteins Vc3S01_3035 PF02824 TGS domain Vc3S01_3035 PF13291 ACT domain Vc3S01_3036 PF12105 SpoU, rRNA methylase, C-terminal Vc3S01_3036 PF00588 SpoU rRNA Methylase family Vc3S01_3037 PF00271 Helicase conserved C-terminal domain Vc3S01_3037 PF17191 RecG wedge domain Vc3S01_3037 PF00270 DEAD/DEAH box helicase Vc3S01_3038 PF00326 Prolyl oligopeptidase family Vc3S01_3039 PF00860 Permease family Vc3S01_3040 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_3040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_3040 PF00672 HAMP domain Vc3S01_3041 PF00072 Response regulator receiver domain Vc3S01_3041 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_3042 PF03449 Transcription elongation factor, N-terminal Vc3S01_3042 PF01272 Transcription elongation factor, GreA/GreB, C-term Vc3S01_3044 PF17674 HHH domain Vc3S01_3044 PF09371 Tex-like protein N-terminal domain Vc3S01_3044 PF00575 S1 RNA binding domain Vc3S01_3044 PF16921 Tex protein YqgF-like domain Vc3S01_3046 PF00561 alpha/beta hydrolase fold Vc3S01_3047 PF00156 Phosphoribosyl transferase domain Vc3S01_3048 PF01106 NifU-like domain Vc3S01_3048 PF01521 Iron-sulphur cluster biosynthesis Vc3S01_3049 PF00293 NUDIX domain Vc3S01_3050 PF00459 Inositol monophosphatase family Vc3S01_3051 PF01203 Type II secretion system (T2SS), protein N Vc3S01_3052 PF04612 Type II secretion system (T2SS), protein M Vc3S01_3053 PF12693 GspL periplasmic domain Vc3S01_3053 PF05134 Type II secretion system (T2SS), protein L Vc3S01_3054 PF03934 Type II secretion system (T2SS), protein K Vc3S01_3055 PF11612 Type II secretion system (T2SS), protein J Vc3S01_3055 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_3056 PF02501 Type II secretion system (T2SS), protein I Vc3S01_3056 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_3057 PF12019 Type II transport protein GspH Vc3S01_3058 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_3058 PF08334 Type II secretion system (T2SS), protein G Vc3S01_3059 PF00482 Type II secretion system (T2SS), protein F Vc3S01_3060 PF00437 Type II/IV secretion system protein Vc3S01_3061 PF00263 Bacterial type II and III secretion system protein Vc3S01_3061 PF03958 Bacterial type II/III secretion system short domain Vc3S01_3062 PF11356 Type II secretion system protein C Vc3S01_3063 PF01479 S4 domain Vc3S01_3064 PF01430 Hsp33 protein Vc3S01_3065 PF01293 Phosphoenolpyruvate carboxykinase Vc3S01_3067 PF00583 Acetyltransferase (GNAT) family Vc3S01_3067 PF09500 Putative thioesterase (yiiD_Cterm) Vc3S01_3068 PF02580 D-Tyr-tRNA(Tyr) deacylase Vc3S01_3069 PF03631 Virulence factor BrkB Vc3S01_3074 PF03951 Glutamine synthetase, beta-Grasp domain Vc3S01_3074 PF00120 Glutamine synthetase, catalytic domain Vc3S01_3076 PF00989 PAS fold Vc3S01_3076 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_3076 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_3077 PF00158 Sigma-54 interaction domain Vc3S01_3077 PF00072 Response regulator receiver domain Vc3S01_3077 PF02954 Bacterial regulatory protein, Fis family Vc3S01_3078 PF13188 PAS domain Vc3S01_3078 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_3078 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_3078 PF00563 EAL domain Vc3S01_3079 PF00962 Adenosine/AMP deaminase Vc3S01_3080 PF06969 HemN C-terminal domain Vc3S01_3080 PF04055 Radical SAM superfamily Vc3S01_3081 PF10675 Protein of unknown function (DUF2489) Vc3S01_3082 PF04220 Der GTPase activator (YihI) Vc3S01_3085 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Vc3S01_3086 PF01926 50S ribosome-binding GTPase Vc3S01_3087 PF01612 3'-5' exonuclease Vc3S01_3087 PF00476 DNA polymerase family A Vc3S01_3087 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Vc3S01_3087 PF01367 5'-3' exonuclease, C-terminal SAM fold Vc3S01_3089 PF00490 Delta-aminolevulinic acid dehydratase Vc3S01_3091 PF01026 TatD related DNase Vc3S01_3094 PF00902 Sec-independent protein translocase protein (TatC) Vc3S01_3095 PF02416 mttA/Hcf106 family Vc3S01_3096 PF02416 mttA/Hcf106 family Vc3S01_3097 PF03109 ABC1 family Vc3S01_3098 PF02036 SCP-2 sterol transfer family Vc3S01_3099 PF01209 ubiE/COQ5 methyltransferase family Vc3S01_3100 PF02646 RmuC family Vc3S01_3102 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_3102 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_3102 PF00563 EAL domain Vc3S01_3103 PF12728 Helix-turn-helix domain Vc3S01_3103 PF12727 PBP superfamily domain Vc3S01_3108 PF10625 Universal stress protein B (UspB) Vc3S01_3109 PF00210 Ferritin-like domain Vc3S01_3110 PF00582 Universal stress protein family Vc3S01_3111 PF00892 EamA-like transporter family Vc3S01_3113 PF04445 Putative SAM-dependent methyltransferase Vc3S01_3114 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_3114 PF00563 EAL domain Vc3S01_3114 PF08448 PAS fold Vc3S01_3115 PF01037 Lrp/AsnC ligand binding domain Vc3S01_3116 PF01432 Peptidase family M3 Vc3S01_3117 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Vc3S01_3119 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Vc3S01_3119 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_3128 PF07804 HipA-like C-terminal domain Vc3S01_3128 PF13657 HipA N-terminal domain Vc3S01_3129 PF01381 Helix-turn-helix Vc3S01_3130 PF04245 37-kD nucleoid-associated bacterial protein Vc3S01_3134 PF01081 KDPG and KHG aldolase Vc3S01_3135 PF02447 GntP family permease Vc3S01_3136 PF01202 Shikimate kinase Vc3S01_3137 PF00920 Dehydratase family Vc3S01_3138 PF00893 Small Multidrug Resistance protein Vc3S01_3139 PF00893 Small Multidrug Resistance protein Vc3S01_3140 PF03466 LysR substrate binding domain Vc3S01_3140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_3141 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_3141 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Vc3S01_3142 PF00069 Protein kinase domain Vc3S01_3148 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_3148 PF12911 N-terminal TM domain of oligopeptide transport permease C Vc3S01_3150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_3151 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_3151 PF00005 ABC transporter Vc3S01_3152 PF13419 Haloacid dehalogenase-like hydrolase Vc3S01_3153 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Vc3S01_3154 PF13361 UvrD-like helicase C-terminal domain Vc3S01_3154 PF00580 UvrD/REP helicase N-terminal domain Vc3S01_3155 PF08359 YsiA-like protein, C-terminal region Vc3S01_3155 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_3156 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_3157 PF00873 AcrB/AcrD/AcrF family Vc3S01_3158 PF04380 Membrane fusogenic activity Vc3S01_3159 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Vc3S01_3159 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Vc3S01_3160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_3160 PF03466 LysR substrate binding domain Vc3S01_3163 PF00132 Bacterial transferase hexapeptide (six repeats) Vc3S01_3165 PF01488 Shikimate / quinate 5-dehydrogenase Vc3S01_3165 PF08501 Shikimate dehydrogenase substrate binding domain Vc3S01_3165 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Vc3S01_3166 PF01218 Coproporphyrinogen III oxidase Vc3S01_3167 PF01300 Telomere recombination Vc3S01_3168 PF00731 AIR carboxylase Vc3S01_3169 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Vc3S01_3169 PF02222 ATP-grasp domain Vc3S01_3170 PF01396 Topoisomerase DNA binding C4 zinc finger Vc3S01_3171 PF04361 Protein of unknown function (DUF494) Vc3S01_3172 PF02481 DNA recombination-mediator protein A Vc3S01_3172 PF17782 DprA winged helix domain Vc3S01_3174 PF01327 Polypeptide deformylase Vc3S01_3175 PF00551 Formyl transferase Vc3S01_3175 PF02911 Formyl transferase, C-terminal domain Vc3S01_3176 PF01029 NusB family Vc3S01_3176 PF01189 16S rRNA methyltransferase RsmB/F Vc3S01_3177 PF02080 TrkA-C domain Vc3S01_3177 PF02254 TrkA-N domain Vc3S01_3178 PF02386 Cation transport protein Vc3S01_3180 PF03006 Haemolysin-III related Vc3S01_3181 PF07070 SpoOM protein Vc3S01_3184 PF06288 Protein of unknown function (DUF1040) Vc3S01_3185 PF12801 4Fe-4S binding domain Vc3S01_3185 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Vc3S01_3185 PF13746 4Fe-4S dicluster domain Vc3S01_3186 PF01636 Phosphotransferase enzyme family Vc3S01_3187 PF01323 DSBA-like thioredoxin domain Vc3S01_3189 PF01553 Acyltransferase Vc3S01_3191 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_3191 PF17152 Periplasmic sensor domain Vc3S01_3192 PF01078 Magnesium chelatase, subunit ChlI Vc3S01_3192 PF13335 Magnesium chelatase, subunit ChlI C-terminal Vc3S01_3193 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Vc3S01_3193 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Vc3S01_3193 PF00205 Thiamine pyrophosphate enzyme, central domain Vc3S01_3195 PF01063 Amino-transferase class IV Vc3S01_3196 PF00920 Dehydratase family Vc3S01_3197 PF00291 Pyridoxal-phosphate dependent enzyme Vc3S01_3197 PF00585 C-terminal regulatory domain of Threonine dehydratase Vc3S01_3198 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_3199 PF03466 LysR substrate binding domain Vc3S01_3199 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_3200 PF07690 Major Facilitator Superfamily Vc3S01_3201 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_3202 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_3203 PF12804 MobA-like NTP transferase domain Vc3S01_3203 PF00132 Bacterial transferase hexapeptide (six repeats) Vc3S01_3204 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Vc3S01_3204 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Vc3S01_3205 PF02874 ATP synthase alpha/beta family, beta-barrel domain Vc3S01_3205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Vc3S01_3206 PF00231 ATP synthase Vc3S01_3207 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Vc3S01_3207 PF00306 ATP synthase alpha/beta chain, C terminal domain Vc3S01_3207 PF02874 ATP synthase alpha/beta family, beta-barrel domain Vc3S01_3208 PF00213 ATP synthase delta (OSCP) subunit Vc3S01_3209 PF00430 ATP synthase B/B' CF(0) Vc3S01_3210 PF00137 ATP synthase subunit C Vc3S01_3211 PF00119 ATP synthase A chain Vc3S01_3212 PF03899 ATP synthase I chain Vc3S01_3213 PF17762 HTH domain found in ParB protein Vc3S01_3213 PF02195 ParB-like nuclease domain Vc3S01_3214 PF13614 AAA domain Vc3S01_3215 PF02527 rRNA small subunit methyltransferase G Vc3S01_3216 PF13932 GidA associated domain Vc3S01_3216 PF01134 Glucose inhibited division protein A Vc3S01_A0001 PF13614 AAA domain Vc3S01_A0001 PF18607 ParA helix turn helix domain Vc3S01_A0005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_A0005 PF00005 ABC transporter Vc3S01_A0006 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_A0006 PF00005 ABC transporter Vc3S01_A0008 PF08719 Domain of unknown function (DUF1768) Vc3S01_A0008 PF00925 GTP cyclohydrolase II Vc3S01_A0010 PF00672 HAMP domain Vc3S01_A0010 PF01627 Hpt domain Vc3S01_A0010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0010 PF00072 Response regulator receiver domain Vc3S01_A0010 PF17149 Periplasmic sensor domain found in signal transduction proteins Vc3S01_A0010 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0012 PF01709 Transcriptional regulator Vc3S01_A0013 PF01098 Cell cycle protein Vc3S01_A0016 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A0016 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_A0017 PF03466 LysR substrate binding domain Vc3S01_A0017 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0019 PF00005 ABC transporter Vc3S01_A0023 PF07694 5TMR of 5TMR-LYT Vc3S01_A0023 PF13492 GAF domain Vc3S01_A0023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0023 PF06580 Histidine kinase Vc3S01_A0024 PF00072 Response regulator receiver domain Vc3S01_A0024 PF04397 LytTr DNA-binding domain Vc3S01_A0026 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Vc3S01_A0027 PF00672 HAMP domain Vc3S01_A0027 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A0027 PF17200 Single Cache domain 2 Vc3S01_A0030 PF03616 Sodium/glutamate symporter Vc3S01_A0034 PF01593 Flavin containing amine oxidoreductase Vc3S01_A0038 PF00005 ABC transporter Vc3S01_A0039 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_A0039 PF00155 Aminotransferase class I and II Vc3S01_A0040 PF03616 Sodium/glutamate symporter Vc3S01_A0043 PF12833 Helix-turn-helix domain Vc3S01_A0044 PF02386 Cation transport protein Vc3S01_A0046 PF12833 Helix-turn-helix domain Vc3S01_A0053 PF02492 CobW/HypB/UreG, nucleotide-binding domain Vc3S01_A0055 PF12833 Helix-turn-helix domain Vc3S01_A0056 PF00005 ABC transporter Vc3S01_A0058 PF01032 FecCD transport family Vc3S01_A0060 PF00916 Sulfate permease family Vc3S01_A0060 PF01740 STAS domain Vc3S01_A0063 PF01042 Endoribonuclease L-PSP Vc3S01_A0064 PF14760 Rnk N-terminus Vc3S01_A0064 PF01272 Transcription elongation factor, GreA/GreB, C-term Vc3S01_A0065 PF12833 Helix-turn-helix domain Vc3S01_A0067 PF02492 CobW/HypB/UreG, nucleotide-binding domain Vc3S01_A0068 PF00194 Eukaryotic-type carbonic anhydrase Vc3S01_A0071 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Vc3S01_A0074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0074 PF03466 LysR substrate binding domain Vc3S01_A0075 PF07681 DoxX Vc3S01_A0077 PF00730 HhH-GPD superfamily base excision DNA repair protein Vc3S01_A0077 PF06029 AlkA N-terminal domain Vc3S01_A0078 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Vc3S01_A0078 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Vc3S01_A0080 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Vc3S01_A0082 PF03600 Citrate transporter Vc3S01_A0087 PF08329 Chitinase A, N-terminal domain Vc3S01_A0087 PF00704 Glycosyl hydrolases family 18 Vc3S01_A0089 PF06865 Pyrimidine/purine nucleoside phosphorylase Vc3S01_A0091 PF00563 EAL domain Vc3S01_A0091 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0094 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_A0096 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0097 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0098 PF00232 Glycosyl hydrolase family 1 Vc3S01_A0099 PF00005 ABC transporter Vc3S01_A0099 PF17912 MalK OB fold domain Vc3S01_A0100 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_A0104 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_A0105 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0106 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0106 PF12911 N-terminal TM domain of oligopeptide transport permease C Vc3S01_A0107 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_A0107 PF00005 ABC transporter Vc3S01_A0108 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_A0108 PF00005 ABC transporter Vc3S01_A0110 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_A0111 PF00722 Glycosyl hydrolases family 16 Vc3S01_A0114 PF12833 Helix-turn-helix domain Vc3S01_A0115 PF14310 Fibronectin type III-like domain Vc3S01_A0115 PF00933 Glycosyl hydrolase family 3 N terminal domain Vc3S01_A0115 PF01915 Glycosyl hydrolase family 3 C-terminal domain Vc3S01_A0116 PF01554 MatE Vc3S01_A0117 PF00849 RNA pseudouridylate synthase Vc3S01_A0120 PF00563 EAL domain Vc3S01_A0120 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0120 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A0122 PF05656 Protein of unknown function (DUF805) Vc3S01_A0124 PF00756 Putative esterase Vc3S01_A0125 PF08240 Alcohol dehydrogenase GroES-like domain Vc3S01_A0125 PF00107 Zinc-binding dehydrogenase Vc3S01_A0126 PF00797 N-acetyltransferase Vc3S01_A0129 PF03466 LysR substrate binding domain Vc3S01_A0129 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0134 PF00326 Prolyl oligopeptidase family Vc3S01_A0135 PF01810 LysE type translocator Vc3S01_A0136 PF01037 Lrp/AsnC ligand binding domain Vc3S01_A0137 PF18416 N-acetylglucosamine binding protein domain 2 Vc3S01_A0137 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading Vc3S01_A0139 PF00893 Small Multidrug Resistance protein Vc3S01_A0141 PF03466 LysR substrate binding domain Vc3S01_A0141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0142 PF01554 MatE Vc3S01_A0145 PF13599 Pentapeptide repeats (9 copies) Vc3S01_A0146 PF03922 OmpW family Vc3S01_A0147 PF13533 Biotin-lipoyl like Vc3S01_A0148 PF07690 Major Facilitator Superfamily Vc3S01_A0150 PF12706 Beta-lactamase superfamily domain Vc3S01_A0152 PF01204 Trehalase Vc3S01_A0155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_A0156 PF03974 Ecotin Vc3S01_A0159 PF01593 Flavin containing amine oxidoreductase Vc3S01_A0159 PF02027 RolB/RolC glucosidase family Vc3S01_A0163 PF03466 LysR substrate binding domain Vc3S01_A0163 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0171 PF05651 Putative sugar diacid recognition Vc3S01_A0171 PF17853 GGDEF-like domain Vc3S01_A0171 PF13556 PucR C-terminal helix-turn-helix domain Vc3S01_A0172 PF02595 Glycerate kinase family Vc3S01_A0173 PF00155 Aminotransferase class I and II Vc3S01_A0173 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_A0181 PF00583 Acetyltransferase (GNAT) family Vc3S01_A0187 PF03264 NapC/NirT cytochrome c family, N-terminal region Vc3S01_A0188 PF18364 Molybdopterin oxidoreductase N-terminal domain Vc3S01_A0188 PF00384 Molybdopterin oxidoreductase Vc3S01_A0188 PF01568 Molydopterin dinucleotide binding domain Vc3S01_A0189 PF01569 PAP2 superfamily Vc3S01_A0190 PF02581 Thiamine monophosphate synthase Vc3S01_A0191 PF02110 Hydroxyethylthiazole kinase family Vc3S01_A0192 PF03070 TENA/THI-4/PQQC family Vc3S01_A0193 PF09084 NMT1/THI5 like Vc3S01_A0194 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0195 PF00005 ABC transporter Vc3S01_A0196 PF08543 Phosphomethylpyrimidine kinase Vc3S01_A0197 PF01523 Putative modulator of DNA gyrase Vc3S01_A0198 PF01523 Putative modulator of DNA gyrase Vc3S01_A0199 PF04013 Putative SAM-dependent RNA methyltransferase Vc3S01_A0203 PF10928 Protein of unknown function (DUF2810) Vc3S01_A0204 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Vc3S01_A0204 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Vc3S01_A0206 PF03009 Glycerophosphoryl diester phosphodiesterase family Vc3S01_A0208 PF00072 Response regulator receiver domain Vc3S01_A0208 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_A0209 PF00672 HAMP domain Vc3S01_A0209 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0209 PF16750 Sensor domain of 2-component histidine kinase Vc3S01_A0209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0210 PF07715 TonB-dependent Receptor Plug Domain Vc3S01_A0210 PF00593 TonB dependent receptor Vc3S01_A0212 PF01618 MotA/TolQ/ExbB proton channel family Vc3S01_A0213 PF01618 MotA/TolQ/ExbB proton channel family Vc3S01_A0214 PF02472 Biopolymer transport protein ExbD/TolR Vc3S01_A0223 PF01297 Zinc-uptake complex component A periplasmic Vc3S01_A0224 PF00005 ABC transporter Vc3S01_A0225 PF00950 ABC 3 transport family Vc3S01_A0228 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Vc3S01_A0228 PF00326 Prolyl oligopeptidase family Vc3S01_A0229 PF07690 Major Facilitator Superfamily Vc3S01_A0230 PF00491 Arginase family Vc3S01_A0231 PF17810 Arginine decarboxylase helical bundle domain Vc3S01_A0231 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Vc3S01_A0231 PF17944 Arginine decarboxylase C-terminal helical extension Vc3S01_A0233 PF18030 RimK PreATP-grasp domain Vc3S01_A0233 PF08443 RimK-like ATP-grasp domain Vc3S01_A0234 PF08443 RimK-like ATP-grasp domain Vc3S01_A0234 PF18030 RimK PreATP-grasp domain Vc3S01_A0236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0236 PF03466 LysR substrate binding domain Vc3S01_A0241 PF00232 Glycosyl hydrolase family 1 Vc3S01_A0243 PF00072 Response regulator receiver domain Vc3S01_A0243 PF13426 PAS domain Vc3S01_A0243 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0243 PF08448 PAS fold Vc3S01_A0244 PF02954 Bacterial regulatory protein, Fis family Vc3S01_A0244 PF00158 Sigma-54 interaction domain Vc3S01_A0244 PF00072 Response regulator receiver domain Vc3S01_A0245 PF05525 Branched-chain amino acid transport protein Vc3S01_A0249 PF01266 FAD dependent oxidoreductase Vc3S01_A0252 PF03116 NQR2, RnfD, RnfE family Vc3S01_A0253 PF01212 Beta-eliminating lyase Vc3S01_A0257 PF01773 Na+ dependent nucleoside transporter N-terminus Vc3S01_A0257 PF07662 Na+ dependent nucleoside transporter C-terminus Vc3S01_A0257 PF07670 Nucleoside recognition Vc3S01_A0258 PF00483 Nucleotidyl transferase Vc3S01_A0262 PF00563 EAL domain Vc3S01_A0262 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0262 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A0266 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0267 PF00875 DNA photolyase Vc3S01_A0267 PF03441 FAD binding domain of DNA photolyase Vc3S01_A0268 PF04244 Deoxyribodipyrimidine photo-lyase-related protein Vc3S01_A0270 PF01625 Peptide methionine sulfoxide reductase Vc3S01_A0270 PF01641 SelR domain Vc3S01_A0271 PF02566 OsmC-like protein Vc3S01_A0272 PF12464 Maltose acetyltransferase Vc3S01_A0272 PF14602 Hexapeptide repeat of succinyl-transferase Vc3S01_A0277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0277 PF03466 LysR substrate binding domain Vc3S01_A0278 PF13419 Haloacid dehalogenase-like hydrolase Vc3S01_A0284 PF00657 GDSL-like Lipase/Acylhydrolase Vc3S01_A0288 PF13419 Haloacid dehalogenase-like hydrolase Vc3S01_A0290 PF00266 Aminotransferase class-V Vc3S01_A0292 PF00005 ABC transporter Vc3S01_A0293 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0294 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_A0294 PF07702 UTRA domain Vc3S01_A0297 PF04393 Protein of unknown function (DUF535) Vc3S01_A0299 PF01266 FAD dependent oxidoreductase Vc3S01_A0300 PF00246 Zinc carboxypeptidase Vc3S01_A0300 PF18027 Cytosolic carboxypeptidase N-terminal domain Vc3S01_A0301 PF00691 OmpA family Vc3S01_A0301 PF01389 OmpA-like transmembrane domain Vc3S01_A0302 PF03466 LysR substrate binding domain Vc3S01_A0302 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0304 PF03466 LysR substrate binding domain Vc3S01_A0306 PF01566 Natural resistance-associated macrophage protein Vc3S01_A0307 PF00854 POT family Vc3S01_A0308 PF03315 Serine dehydratase beta chain Vc3S01_A0308 PF03313 Serine dehydratase alpha chain Vc3S01_A0313 PF01476 LysM domain Vc3S01_A0313 PF01464 Transglycosylase SLT domain Vc3S01_A0317 PF00460 Flagella basal body rod protein Vc3S01_A0318 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_A0318 PF00460 Flagella basal body rod protein Vc3S01_A0319 PF13861 FlgD Tudor-like domain Vc3S01_A0319 PF03963 Flagellar hook capping protein - N-terminal region Vc3S01_A0319 PF13860 FlgD Ig-like domain Vc3S01_A0320 PF07559 Flagellar basal body protein FlaE Vc3S01_A0320 PF00460 Flagella basal body rod protein Vc3S01_A0320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_A0321 PF00460 Flagella basal body rod protein Vc3S01_A0321 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_A0322 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_A0322 PF00460 Flagella basal body rod protein Vc3S01_A0323 PF02107 Flagellar L-ring protein Vc3S01_A0324 PF02119 Flagellar P-ring protein Vc3S01_A0325 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Vc3S01_A0325 PF10135 Rod binding protein Vc3S01_A0326 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Vc3S01_A0326 PF00460 Flagella basal body rod protein Vc3S01_A0327 PF00700 Bacterial flagellin C-terminal helical region Vc3S01_A0327 PF00669 Bacterial flagellin N-terminal helical region Vc3S01_A0331 PF01070 FMN-dependent dehydrogenase Vc3S01_A0339 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_A0341 PF08000 Bacterial PH domain Vc3S01_A0344 PF02567 Phenazine biosynthesis-like protein Vc3S01_A0349 PF00691 OmpA family Vc3S01_A0349 PF13677 Membrane MotB of proton-channel complex MotA/MotB Vc3S01_A0350 PF01618 MotA/TolQ/ExbB proton channel family Vc3S01_A0351 PF04545 Sigma-70, region 4 Vc3S01_A0351 PF04542 Sigma-70 region 2 Vc3S01_A0352 PF03748 Flagellar basal body-associated protein FliL Vc3S01_A0355 PF02561 Flagellar protein FliS Vc3S01_A0356 PF02465 Flagellar hook-associated protein 2 N-terminus Vc3S01_A0356 PF07196 Flagellin hook IN motif Vc3S01_A0356 PF07195 Flagellar hook-associated protein 2 C-terminus Vc3S01_A0358 PF00700 Bacterial flagellin C-terminal helical region Vc3S01_A0358 PF00669 Bacterial flagellin N-terminal helical region Vc3S01_A0360 PF00771 FHIPEP family Vc3S01_A0361 PF01312 FlhB HrpN YscU SpaS Family Vc3S01_A0362 PF01311 Bacterial export proteins, family 1 Vc3S01_A0363 PF01313 Bacterial export proteins, family 3 Vc3S01_A0364 PF00813 FliP family Vc3S01_A0365 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Vc3S01_A0368 PF02954 Bacterial regulatory protein, Fis family Vc3S01_A0368 PF00158 Sigma-54 interaction domain Vc3S01_A0368 PF00072 Response regulator receiver domain Vc3S01_A0369 PF02049 Flagellar hook-basal body complex protein FliE Vc3S01_A0370 PF01514 Secretory protein of YscJ/FliF family Vc3S01_A0370 PF08345 Flagellar M-ring protein C-terminal Vc3S01_A0371 PF14841 FliG middle domain Vc3S01_A0371 PF14842 FliG N-terminal domain Vc3S01_A0371 PF01706 FliG C-terminal domain Vc3S01_A0373 PF18269 T3SS EscN ATPase C-terminal domain Vc3S01_A0373 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Vc3S01_A0375 PF00563 EAL domain Vc3S01_A0375 PF05231 MASE1 Vc3S01_A0377 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0377 PF03466 LysR substrate binding domain Vc3S01_A0379 PF00419 Fimbrial protein Vc3S01_A0380 PF02753 Pili assembly chaperone PapD, C-terminal domain Vc3S01_A0380 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Vc3S01_A0381 PF00577 Outer membrane usher protein Vc3S01_A0381 PF13953 PapC C-terminal domain Vc3S01_A0381 PF13954 PapC N-terminal domain Vc3S01_A0383 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Vc3S01_A0383 PF02753 Pili assembly chaperone PapD, C-terminal domain Vc3S01_A0390 PF03466 LysR substrate binding domain Vc3S01_A0390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0393 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_A0394 PF03466 LysR substrate binding domain Vc3S01_A0394 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0398 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_A0398 PF00072 Response regulator receiver domain Vc3S01_A0399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0399 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0399 PF13426 PAS domain Vc3S01_A0399 PF08448 PAS fold Vc3S01_A0399 PF00072 Response regulator receiver domain Vc3S01_A0400 PF00266 Aminotransferase class-V Vc3S01_A0402 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A0402 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0402 PF00563 EAL domain Vc3S01_A0403 PF00155 Aminotransferase class I and II Vc3S01_A0404 PF08240 Alcohol dehydrogenase GroES-like domain Vc3S01_A0404 PF00107 Zinc-binding dehydrogenase Vc3S01_A0406 PF14031 Putative serine dehydratase domain Vc3S01_A0406 PF01168 Alanine racemase, N-terminal domain Vc3S01_A0410 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0411 PF07690 Major Facilitator Superfamily Vc3S01_A0412 PF00107 Zinc-binding dehydrogenase Vc3S01_A0412 PF08240 Alcohol dehydrogenase GroES-like domain Vc3S01_A0413 PF00194 Eukaryotic-type carbonic anhydrase Vc3S01_A0414 PF00924 Mechanosensitive ion channel Vc3S01_A0416 PF01070 FMN-dependent dehydrogenase Vc3S01_A0417 PF02652 L-lactate permease Vc3S01_A0418 PF03466 LysR substrate binding domain Vc3S01_A0418 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0419 PF00326 Prolyl oligopeptidase family Vc3S01_A0419 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Vc3S01_A0420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Vc3S01_A0420 PF00005 ABC transporter Vc3S01_A0422 PF13654 AAA domain Vc3S01_A0422 PF05362 Lon protease (S16) C-terminal proteolytic domain Vc3S01_A0423 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A0423 PF00672 HAMP domain Vc3S01_A0423 PF12729 Four helix bundle sensory module for signal transduction Vc3S01_A0424 PF13609 Gram-negative porin Vc3S01_A0425 PF07238 PilZ domain Vc3S01_A0425 PF12945 Flagellar protein YcgR Vc3S01_A0428 PF13302 Acetyltransferase (GNAT) domain Vc3S01_A0429 PF12800 4Fe-4S binding domain Vc3S01_A0429 PF12838 4Fe-4S dicluster domain Vc3S01_A0430 PF12837 4Fe-4S binding domain Vc3S01_A0430 PF12801 4Fe-4S binding domain Vc3S01_A0433 PF01022 Bacterial regulatory protein, arsR family Vc3S01_A0436 PF00005 ABC transporter Vc3S01_A0436 PF12558 ATP-binding cassette cobalt transporter Vc3S01_A0437 PF07155 ECF-type riboflavin transporter, S component Vc3S01_A0438 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_A0438 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A0439 PF11742 Protein of unknown function (DUF3302) Vc3S01_A0441 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0444 PF01048 Phosphorylase superfamily Vc3S01_A0445 PF08349 Protein of unknown function (DUF1722) Vc3S01_A0446 PF13411 MerR HTH family regulatory protein Vc3S01_A0447 PF00875 DNA photolyase Vc3S01_A0447 PF03441 FAD binding domain of DNA photolyase Vc3S01_A0448 PF01476 LysM domain Vc3S01_A0448 PF03734 L,D-transpeptidase catalytic domain Vc3S01_A0448 PF17969 L,D-transpeptidase C-terminal domain Vc3S01_A0450 PF00271 Helicase conserved C-terminal domain Vc3S01_A0450 PF00270 DEAD/DEAH box helicase Vc3S01_A0453 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Vc3S01_A0453 PF00326 Prolyl oligopeptidase family Vc3S01_A0454 PF07715 TonB-dependent Receptor Plug Domain Vc3S01_A0454 PF00593 TonB dependent receptor Vc3S01_A0458 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A0458 PF02743 Cache domain Vc3S01_A0458 PF00672 HAMP domain Vc3S01_A0459 PF12849 PBP superfamily domain Vc3S01_A0460 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0461 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0462 PF00005 ABC transporter Vc3S01_A0465 PF13519 von Willebrand factor type A domain Vc3S01_A0466 PF13519 von Willebrand factor type A domain Vc3S01_A0468 PF01882 Protein of unknown function DUF58 Vc3S01_A0469 PF07726 ATPase family associated with various cellular activities (AAA) Vc3S01_A0469 PF17863 AAA lid domain Vc3S01_A0473 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A0473 PF00672 HAMP domain Vc3S01_A0473 PF02743 Cache domain Vc3S01_A0475 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A0476 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A0478 PF00005 ABC transporter Vc3S01_A0478 PF00664 ABC transporter transmembrane region Vc3S01_A0479 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_A0481 PF12464 Maltose acetyltransferase Vc3S01_A0481 PF14602 Hexapeptide repeat of succinyl-transferase Vc3S01_A0482 PF01966 HD domain Vc3S01_A0482 PF00072 Response regulator receiver domain Vc3S01_A0483 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0487 PF01389 OmpA-like transmembrane domain Vc3S01_A0487 PF00691 OmpA family Vc3S01_A0491 PF00691 OmpA family Vc3S01_A0493 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0493 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A0493 PF00563 EAL domain Vc3S01_A0495 PF02378 Phosphotransferase system, EIIC Vc3S01_A0496 PF00127 Copper binding proteins, plastocyanin/azurin family Vc3S01_A0498 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_A0499 PF00375 Sodium:dicarboxylate symporter family Vc3S01_A0501 PF00158 Sigma-54 interaction domain Vc3S01_A0501 PF01590 GAF domain Vc3S01_A0502 PF00301 Rubredoxin Vc3S01_A0502 PF00753 Metallo-beta-lactamase superfamily Vc3S01_A0502 PF00258 Flavodoxin Vc3S01_A0503 PF18113 Rubredoxin binding C-terminal domain Vc3S01_A0503 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_A0506 PF00892 EamA-like transporter family Vc3S01_A0508 PF01238 Phosphomannose isomerase type I Vc3S01_A0509 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Vc3S01_A0509 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Vc3S01_A0510 PF12833 Helix-turn-helix domain Vc3S01_A0512 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Vc3S01_A0514 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0514 PF03466 LysR substrate binding domain Vc3S01_A0516 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Vc3S01_A0516 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Vc3S01_A0517 PF06628 Catalase-related immune-responsive Vc3S01_A0517 PF00199 Catalase Vc3S01_A0519 PF00107 Zinc-binding dehydrogenase Vc3S01_A0519 PF16884 N-terminal domain of oxidoreductase Vc3S01_A0520 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_A0520 PF16925 Tetracyclin repressor-like, C-terminal domain Vc3S01_A0527 PF00534 Glycosyl transferases group 1 Vc3S01_A0527 PF13439 Glycosyltransferase Family 4 Vc3S01_A0529 PF02706 Chain length determinant protein Vc3S01_A0529 PF13807 G-rich domain on putative tyrosine kinase Vc3S01_A0529 PF13614 AAA domain Vc3S01_A0532 PF02397 Bacterial sugar transferase Vc3S01_A0533 PF00563 EAL domain Vc3S01_A0533 PF12792 CSS motif domain associated with EAL Vc3S01_A0535 PF00005 ABC transporter Vc3S01_A0535 PF08402 TOBE domain Vc3S01_A0536 PF01547 Bacterial extracellular solute-binding protein Vc3S01_A0537 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0537 PF14785 Maltose transport system permease protein MalF P2 domain Vc3S01_A0538 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0544 PF05661 Protein of unknown function (DUF808) Vc3S01_A0545 PF01979 Amidohydrolase family Vc3S01_A0546 PF01679 Proteolipid membrane potential modulator Vc3S01_A0547 PF03473 MOSC domain Vc3S01_A0547 PF00111 2Fe-2S iron-sulfur cluster binding domain Vc3S01_A0547 PF03476 MOSC N-terminal beta barrel domain Vc3S01_A0547 PF03476 MOSC N-terminal beta barrel domain Vc3S01_A0547 PF00111 2Fe-2S iron-sulfur cluster binding domain Vc3S01_A0547 PF03473 MOSC domain Vc3S01_A0548 PF02540 NAD synthase Vc3S01_A0549 PF01467 Cytidylyltransferase-like Vc3S01_A0558 PF00005 ABC transporter Vc3S01_A0559 PF01032 FecCD transport family Vc3S01_A0561 PF02472 Biopolymer transport protein ExbD/TolR Vc3S01_A0562 PF01618 MotA/TolQ/ExbB proton channel family Vc3S01_A0563 PF03544 Gram-negative bacterial TonB protein C-terminal Vc3S01_A0564 PF04055 Radical SAM superfamily Vc3S01_A0565 PF06228 Haem utilisation ChuX/HutX Vc3S01_A0566 PF01243 Pyridoxamine 5'-phosphate oxidase Vc3S01_A0569 PF00072 Response regulator receiver domain Vc3S01_A0569 PF01584 CheW-like domain Vc3S01_A0571 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Vc3S01_A0571 PF12826 Helix-hairpin-helix motif Vc3S01_A0571 PF03120 NAD-dependent DNA ligase OB-fold domain Vc3S01_A0571 PF01653 NAD-dependent DNA ligase adenylation domain Vc3S01_A0571 PF00533 BRCA1 C Terminus (BRCT) domain Vc3S01_A0572 PF00128 Alpha amylase, catalytic domain Vc3S01_A0575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0575 PF03466 LysR substrate binding domain Vc3S01_A0581 PF03466 LysR substrate binding domain Vc3S01_A0581 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0583 PF02254 TrkA-N domain Vc3S01_A0583 PF00999 Sodium/hydrogen exchanger family Vc3S01_A0584 PF02525 Flavodoxin-like fold Vc3S01_A0585 PF03466 LysR substrate binding domain Vc3S01_A0585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0592 PF01965 DJ-1/PfpI family Vc3S01_A0592 PF12833 Helix-turn-helix domain Vc3S01_A0593 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Vc3S01_A0595 PF00884 Sulfatase Vc3S01_A0595 PF08019 Phosphoethanolamine transferase EptA/EptB Vc3S01_A0596 PF01219 Prokaryotic diacylglycerol kinase Vc3S01_A0598 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0598 PF00672 HAMP domain Vc3S01_A0598 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0599 PF00072 Response regulator receiver domain Vc3S01_A0599 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_A0601 PF13737 Transposase DDE domain Vc3S01_A0602 PF00583 Acetyltransferase (GNAT) family Vc3S01_A0602 PF08218 Citrate lyase ligase C-terminal domain Vc3S01_A0603 PF00106 short chain dehydrogenase Vc3S01_A0606 PF01323 DSBA-like thioredoxin domain Vc3S01_A0609 PF00255 Glutathione peroxidase Vc3S01_A0610 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Vc3S01_A0612 PF07690 Major Facilitator Superfamily Vc3S01_A0615 PF01966 HD domain Vc3S01_A0618 PF07969 Amidohydrolase family Vc3S01_A0619 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Vc3S01_A0620 PF00571 CBS domain Vc3S01_A0620 PF01769 Divalent cation transporter Vc3S01_A0620 PF03448 MgtE intracellular N domain Vc3S01_A0621 PF03109 ABC1 family Vc3S01_A0622 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A0622 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_A0627 PF10124 Mu-like prophage major head subunit gpT Vc3S01_A0643 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_A0643 PF00072 Response regulator receiver domain Vc3S01_A0644 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0644 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0644 PF00672 HAMP domain Vc3S01_A0644 PF16527 Two-component sensor protein CpxA, periplasmic domain Vc3S01_A0646 PF00155 Aminotransferase class I and II Vc3S01_A0646 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_A0647 PF13520 Amino acid permease Vc3S01_A0648 PF01037 Lrp/AsnC ligand binding domain Vc3S01_A0650 PF03466 LysR substrate binding domain Vc3S01_A0650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0654 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Vc3S01_A0654 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Vc3S01_A0656 PF00072 Response regulator receiver domain Vc3S01_A0656 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Vc3S01_A0656 PF01627 Hpt domain Vc3S01_A0656 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0656 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0656 PF00672 HAMP domain Vc3S01_A0657 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Vc3S01_A0659 PF13693 Winged helix-turn-helix DNA-binding Vc3S01_A0660 PF02316 Mu DNA-binding domain Vc3S01_A0660 PF09039 Mu DNA binding, I gamma subdomain Vc3S01_A0660 PF09299 Mu transposase, C-terminal Vc3S01_A0660 PF02914 Bacteriophage Mu transposase Vc3S01_A0661 PF13401 AAA domain Vc3S01_A0661 PF09077 Mu B transposition protein, C terminal Vc3S01_A0676 PF08765 Mor transcription activator family Vc3S01_A0682 PF08461 Ribonuclease R winged-helix domain Vc3S01_A0683 PF11985 Protein of unknown function (DUF3486) Vc3S01_A0686 PF03237 Terminase-like family Vc3S01_A0687 PF06074 Protein of unknown function (DUF935) Vc3S01_A0691 PF10124 Mu-like prophage major head subunit gpT Vc3S01_A0695 PF07030 Protein of unknown function (DUF1320) Vc3S01_A0699 PF17482 Phage tail sheath C-terminal domain Vc3S01_A0699 PF04984 Phage tail sheath protein subtilisin-like domain Vc3S01_A0701 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 Vc3S01_A0707 PF04865 Baseplate J-like protein Vc3S01_A0708 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) Vc3S01_A0712 PF01554 MatE Vc3S01_A0713 PF04363 Protein of unknown function (DUF496) Vc3S01_A0715 PF04337 Protein of unknown function, DUF480 Vc3S01_A0716 PF01541 GIY-YIG catalytic domain Vc3S01_A0717 PF13407 Periplasmic binding protein domain Vc3S01_A0718 PF09308 LuxQ, periplasmic Vc3S01_A0718 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A0718 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0718 PF00072 Response regulator receiver domain Vc3S01_A0721 PF01037 Lrp/AsnC ligand binding domain Vc3S01_A0726 PF02355 Protein export membrane protein Vc3S01_A0726 PF13721 SecD export protein N-terminal TM region Vc3S01_A0726 PF07549 SecD/SecF GG Motif Vc3S01_A0727 PF02355 Protein export membrane protein Vc3S01_A0727 PF07549 SecD/SecF GG Motif Vc3S01_A0729 PF01810 LysE type translocator Vc3S01_A0730 PF00106 short chain dehydrogenase Vc3S01_A0731 PF00108 Thiolase, N-terminal domain Vc3S01_A0731 PF02803 Thiolase, C-terminal domain Vc3S01_A0733 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Vc3S01_A0733 PF00561 alpha/beta hydrolase fold Vc3S01_A0735 PF03264 NapC/NirT cytochrome c family, N-terminal region Vc3S01_A0736 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Vc3S01_A0737 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_A0737 PF00384 Molybdopterin oxidoreductase Vc3S01_A0737 PF01568 Molydopterin dinucleotide binding domain Vc3S01_A0739 PF13187 4Fe-4S dicluster domain Vc3S01_A0739 PF12838 4Fe-4S dicluster domain Vc3S01_A0740 PF00672 HAMP domain Vc3S01_A0740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A0740 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Vc3S01_A0740 PF07730 Histidine kinase Vc3S01_A0741 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A0741 PF00072 Response regulator receiver domain Vc3S01_A0744 PF07687 Peptidase dimerisation domain Vc3S01_A0744 PF01546 Peptidase family M20/M25/M40 Vc3S01_A0745 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Vc3S01_A0747 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A0748 PF00873 AcrB/AcrD/AcrF family Vc3S01_A0749 PF12729 Four helix bundle sensory module for signal transduction Vc3S01_A0749 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A0749 PF00672 HAMP domain Vc3S01_A0750 PF00472 RF-1 domain Vc3S01_A0751 PF13419 Haloacid dehalogenase-like hydrolase Vc3S01_A0752 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Vc3S01_A0752 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Vc3S01_A0754 PF00691 OmpA family Vc3S01_A0754 PF05736 OprF membrane domain Vc3S01_A0758 PF00313 'Cold-shock' DNA-binding domain Vc3S01_A0759 PF03889 Alternative ribosome-rescue factor A Vc3S01_A0761 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0764 PF12704 MacB-like periplasmic core domain Vc3S01_A0764 PF02687 FtsX-like permease family Vc3S01_A0764 PF00005 ABC transporter Vc3S01_A0765 PF00005 ABC transporter Vc3S01_A0767 PF12729 Four helix bundle sensory module for signal transduction Vc3S01_A0767 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A0767 PF00672 HAMP domain Vc3S01_A0768 PF00210 Ferritin-like domain Vc3S01_A0770 PF02016 LD-carboxypeptidase N-terminal domain Vc3S01_A0770 PF17676 LD-carboxypeptidase C-terminal domain Vc3S01_A0771 PF07995 Glucose / Sorbosone dehydrogenase Vc3S01_A0772 PF00465 Iron-containing alcohol dehydrogenase Vc3S01_A0775 PF00892 EamA-like transporter family Vc3S01_A0777 PF03466 LysR substrate binding domain Vc3S01_A0777 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0780 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_A0780 PF00501 AMP-binding enzyme Vc3S01_A0781 PF00351 Biopterin-dependent aromatic amino acid hydroxylase Vc3S01_A0782 PF01329 Pterin 4 alpha carbinolamine dehydratase Vc3S01_A0788 PF12843 Putative quorum-sensing-regulated virulence factor Vc3S01_A0792 PF01470 Pyroglutamyl peptidase Vc3S01_A0794 PF07683 Cobalamin synthesis protein cobW C-terminal domain Vc3S01_A0794 PF02492 CobW/HypB/UreG, nucleotide-binding domain Vc3S01_A0796 PF00563 EAL domain Vc3S01_A0796 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0796 PF05231 MASE1 Vc3S01_A0796 PF08448 PAS fold Vc3S01_A0796 PF13426 PAS domain Vc3S01_A0796 PF08447 PAS fold Vc3S01_A0797 PF00271 Helicase conserved C-terminal domain Vc3S01_A0797 PF00270 DEAD/DEAH box helicase Vc3S01_A0801 PF00563 EAL domain Vc3S01_A0801 PF12792 CSS motif domain associated with EAL Vc3S01_A0802 PF00005 ABC transporter Vc3S01_A0806 PF13737 Transposase DDE domain Vc3S01_A0808 PF01575 MaoC like domain Vc3S01_A0809 PF12849 PBP superfamily domain Vc3S01_A0811 PF12833 Helix-turn-helix domain Vc3S01_A0812 PF08206 Ribonuclease B OB domain Vc3S01_A0812 PF00773 RNB domain Vc3S01_A0812 PF00575 S1 RNA binding domain Vc3S01_A0813 PF00270 DEAD/DEAH box helicase Vc3S01_A0813 PF03880 DbpA RNA binding domain Vc3S01_A0813 PF00271 Helicase conserved C-terminal domain Vc3S01_A0814 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A0814 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0814 PF00563 EAL domain Vc3S01_A0815 PF00871 Acetokinase family Vc3S01_A0827 PF13737 Transposase DDE domain Vc3S01_A0829 PF07745 Glycosyl hydrolase family 53 Vc3S01_A0831 PF00005 ABC transporter Vc3S01_A0831 PF17912 MalK OB fold domain Vc3S01_A0832 PF13416 Bacterial extracellular solute-binding protein Vc3S01_A0833 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0834 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0835 PF07745 Glycosyl hydrolase family 53 Vc3S01_A0836 PF08532 Beta-galactosidase trimerisation domain Vc3S01_A0836 PF02449 Beta-galactosidase Vc3S01_A0836 PF08533 Beta-galactosidase C-terminal domain Vc3S01_A0837 PF02264 LamB porin Vc3S01_A0838 PF12729 Four helix bundle sensory module for signal transduction Vc3S01_A0838 PF00672 HAMP domain Vc3S01_A0838 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A0839 PF16363 GDP-mannose 4,6 dehydratase Vc3S01_A0840 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Vc3S01_A0840 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Vc3S01_A0841 PF10509 Galactokinase galactose-binding signature Vc3S01_A0841 PF00288 GHMP kinases N terminal domain Vc3S01_A0841 PF08544 GHMP kinases C terminal Vc3S01_A0849 PF02463 RecF/RecN/SMC N terminal domain Vc3S01_A0850 PF13657 HipA N-terminal domain Vc3S01_A0850 PF07804 HipA-like C-terminal domain Vc3S01_A0855 PF00350 Dynamin family Vc3S01_A0856 PF13990 YjcZ-like protein Vc3S01_A0857 PF01734 Patatin-like phospholipase Vc3S01_A0859 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Vc3S01_A0859 PF00034 Cytochrome c Vc3S01_A0861 PF00115 Cytochrome C and Quinol oxidase polypeptide I Vc3S01_A0862 PF00034 Cytochrome c Vc3S01_A0870 PF00682 HMGL-like Vc3S01_A0871 PF00378 Enoyl-CoA hydratase/isomerase Vc3S01_A0872 PF01039 Carboxyl transferase domain Vc3S01_A0873 PF02770 Acyl-CoA dehydrogenase, middle domain Vc3S01_A0873 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Vc3S01_A0873 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Vc3S01_A0874 PF00376 MerR family regulatory protein Vc3S01_A0874 PF09278 MerR, DNA binding Vc3S01_A0875 PF02803 Thiolase, C-terminal domain Vc3S01_A0875 PF00108 Thiolase, N-terminal domain Vc3S01_A0876 PF00171 Aldehyde dehydrogenase family Vc3S01_A0878 PF00378 Enoyl-CoA hydratase/isomerase Vc3S01_A0879 PF00378 Enoyl-CoA hydratase/isomerase Vc3S01_A0880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Vc3S01_A0880 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Vc3S01_A0884 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Vc3S01_A0884 PF06481 COX Aromatic Rich Motif Vc3S01_A0885 PF00115 Cytochrome C and Quinol oxidase polypeptide I Vc3S01_A0886 PF00510 Cytochrome c oxidase subunit III Vc3S01_A0887 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Vc3S01_A0888 PF01040 UbiA prenyltransferase family Vc3S01_A0889 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Vc3S01_A0889 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_A0890 PF03466 LysR substrate binding domain Vc3S01_A0890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0892 PF00171 Aldehyde dehydrogenase family Vc3S01_A0894 PF02028 BCCT, betaine/carnitine/choline family transporter Vc3S01_A0897 PF07504 Fungalysin/Thermolysin Propeptide Motif Vc3S01_A0897 PF02868 Thermolysin metallopeptidase, alpha-helical domain Vc3S01_A0897 PF03413 Peptidase propeptide and YPEB domain Vc3S01_A0897 PF04151 Bacterial pre-peptidase C-terminal domain Vc3S01_A0897 PF01447 Thermolysin metallopeptidase, catalytic domain Vc3S01_A0898 PF04151 Bacterial pre-peptidase C-terminal domain Vc3S01_A0898 PF04389 Peptidase family M28 Vc3S01_A0905 PF00005 ABC transporter Vc3S01_A0906 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_A0907 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0908 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A0910 PF03466 LysR substrate binding domain Vc3S01_A0911 PF00043 Glutathione S-transferase, C-terminal domain Vc3S01_A0911 PF13417 Glutathione S-transferase, N-terminal domain Vc3S01_A0914 PF12792 CSS motif domain associated with EAL Vc3S01_A0914 PF00563 EAL domain Vc3S01_A0916 PF01012 Electron transfer flavoprotein domain Vc3S01_A0917 PF00766 Electron transfer flavoprotein FAD-binding domain Vc3S01_A0917 PF01012 Electron transfer flavoprotein domain Vc3S01_A0918 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Vc3S01_A0918 PF00364 Biotin-requiring enzyme Vc3S01_A0918 PF02817 e3 binding domain Vc3S01_A0919 PF02780 Transketolase, C-terminal domain Vc3S01_A0919 PF02779 Transketolase, pyrimidine binding domain Vc3S01_A0920 PF00676 Dehydrogenase E1 component Vc3S01_A0924 PF00012 Hsp70 protein Vc3S01_A0932 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_A0932 PF00072 Response regulator receiver domain Vc3S01_A0935 PF00245 Alkaline phosphatase Vc3S01_A0937 PF00082 Subtilase family Vc3S01_A0937 PF01483 Proprotein convertase P-domain Vc3S01_A0939 PF08448 PAS fold Vc3S01_A0939 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0941 PF03222 Tryptophan/tyrosine permease family Vc3S01_A0942 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0942 PF00563 EAL domain Vc3S01_A0942 PF08448 PAS fold Vc3S01_A0945 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_A0945 PF00384 Molybdopterin oxidoreductase Vc3S01_A0945 PF01568 Molydopterin dinucleotide binding domain Vc3S01_A0946 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Vc3S01_A0946 PF10414 Sirohaem synthase dimerisation region Vc3S01_A0946 PF14824 Sirohaem biosynthesis protein central Vc3S01_A0947 PF00591 Glycosyl transferase family, a/b domain Vc3S01_A0947 PF02885 Glycosyl transferase family, helical bundle domain Vc3S01_A0948 PF01738 Dienelactone hydrolase family Vc3S01_A0949 PF00072 Response regulator receiver domain Vc3S01_A0949 PF03861 ANTAR domain Vc3S01_A0950 PF00005 ABC transporter Vc3S01_A0951 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A0952 PF00005 ABC transporter Vc3S01_A0953 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Vc3S01_A0953 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_A0953 PF13806 Rieske-like [2Fe-2S] domain Vc3S01_A0953 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Vc3S01_A0953 PF18267 Rubredoxin NAD+ reductase C-terminal domain Vc3S01_A0953 PF04324 BFD-like [2Fe-2S] binding domain Vc3S01_A0956 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_A0956 PF08361 MAATS-type transcriptional repressor, C-terminal region Vc3S01_A0960 PF00072 Response regulator receiver domain Vc3S01_A0960 PF00211 Adenylate and Guanylate cyclase catalytic domain Vc3S01_A0961 PF01979 Amidohydrolase family Vc3S01_A0963 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Vc3S01_A0966 PF01476 LysM domain Vc3S01_A0966 PF08525 Opacity-associated protein A N-terminal motif Vc3S01_A0966 PF01551 Peptidase family M23 Vc3S01_A0972 PF01594 AI-2E family transporter Vc3S01_A0973 PF00072 Response regulator receiver domain Vc3S01_A0973 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A0988 PF07690 Major Facilitator Superfamily Vc3S01_A0990 PF00293 NUDIX domain Vc3S01_A0994 PF02583 Metal-sensitive transcriptional repressor Vc3S01_A0997 PF00005 ABC transporter Vc3S01_A0997 PF00664 ABC transporter transmembrane region Vc3S01_A0999 PF00089 Trypsin Vc3S01_A1003 PF03466 LysR substrate binding domain Vc3S01_A1003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1004 PF01039 Carboxyl transferase domain Vc3S01_A1004 PF17848 Acetyl-coA carboxylase zinc finger domain Vc3S01_A1008 PF00884 Sulfatase Vc3S01_A1009 PF00884 Sulfatase Vc3S01_A1010 PF13186 Iron-sulfur cluster-binding domain Vc3S01_A1010 PF04055 Radical SAM superfamily Vc3S01_A1014 PF02311 AraC-like ligand binding domain Vc3S01_A1014 PF12833 Helix-turn-helix domain Vc3S01_A1022 PF02347 Glycine cleavage system P-protein Vc3S01_A1023 PF01597 Glycine cleavage H-protein Vc3S01_A1024 PF00464 Serine hydroxymethyltransferase Vc3S01_A1027 PF08669 Glycine cleavage T-protein C-terminal barrel domain Vc3S01_A1027 PF01571 Aminomethyltransferase folate-binding domain Vc3S01_A1029 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A1030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A1031 PF00873 AcrB/AcrD/AcrF family Vc3S01_A1033 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Vc3S01_A1033 PF02378 Phosphotransferase system, EIIC Vc3S01_A1034 PF00294 pfkB family carbohydrate kinase Vc3S01_A1035 PF00381 PTS HPr component phosphorylation site Vc3S01_A1035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Vc3S01_A1036 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_A1036 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Vc3S01_A1039 PF00989 PAS fold Vc3S01_A1039 PF01590 GAF domain Vc3S01_A1039 PF00563 EAL domain Vc3S01_A1039 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1040 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A1041 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_A1042 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A1043 PF00005 ABC transporter Vc3S01_A1045 PF00465 Iron-containing alcohol dehydrogenase Vc3S01_A1046 PF06719 AraC-type transcriptional regulator N-terminus Vc3S01_A1046 PF12833 Helix-turn-helix domain Vc3S01_A1047 PF06483 Chitinase C Vc3S01_A1047 PF00704 Glycosyl hydrolases family 18 Vc3S01_A1048 PF00483 Nucleotidyl transferase Vc3S01_A1049 PF01268 Formate--tetrahydrofolate ligase Vc3S01_A1050 PF00294 pfkB family carbohydrate kinase Vc3S01_A1053 PF11849 Domain of unknown function (DUF3369) Vc3S01_A1054 PF13419 Haloacid dehalogenase-like hydrolase Vc3S01_A1055 PF17200 Single Cache domain 2 Vc3S01_A1055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A1055 PF00672 HAMP domain Vc3S01_A1057 PF04336 Acyl carrier protein phosphodiesterase Vc3S01_A1058 PF00271 Helicase conserved C-terminal domain Vc3S01_A1058 PF00270 DEAD/DEAH box helicase Vc3S01_A1059 PF12792 CSS motif domain associated with EAL Vc3S01_A1059 PF00563 EAL domain Vc3S01_A1062 PF01292 Prokaryotic cytochrome b561 Vc3S01_A1063 PF04264 YceI-like domain Vc3S01_A1064 PF01226 Formate/nitrite transporter Vc3S01_A1065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1065 PF03466 LysR substrate binding domain Vc3S01_A1066 PF06496 Protein of unknown function (DUF1097) Vc3S01_A1067 PF11398 Protein of unknown function (DUF2813) Vc3S01_A1068 PF00149 Calcineurin-like phosphoesterase Vc3S01_A1068 PF02872 5'-nucleotidase, C-terminal domain Vc3S01_A1069 PF03741 Integral membrane protein TerC family Vc3S01_A1071 PF02965 Vitamin B12 dependent methionine synthase, activation domain Vc3S01_A1071 PF00809 Pterin binding enzyme Vc3S01_A1071 PF02574 Homocysteine S-methyltransferase Vc3S01_A1071 PF02310 B12 binding domain Vc3S01_A1071 PF02607 B12 binding domain Vc3S01_A1074 PF12262 Bacterial virulence factor lipase N-terminal Vc3S01_A1075 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Vc3S01_A1077 PF01435 Peptidase family M48 Vc3S01_A1078 PF03061 Thioesterase superfamily Vc3S01_A1080 PF12793 Sugar transport-related sRNA regulator N-term Vc3S01_A1080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_A1085 PF01556 DnaJ C terminal domain Vc3S01_A1085 PF00226 DnaJ domain Vc3S01_A1085 PF00684 DnaJ central domain Vc3S01_A1087 PF00563 EAL domain Vc3S01_A1087 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1087 PF13188 PAS domain Vc3S01_A1087 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A1088 PF07055 Enoyl reductase FAD binding domain Vc3S01_A1088 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Vc3S01_A1088 PF12241 Trans-2-enoyl-CoA reductase catalytic region Vc3S01_A1089 PF13472 GDSL-like Lipase/Acylhydrolase family Vc3S01_A1090 PF00005 ABC transporter Vc3S01_A1093 PF02626 Carboxyltransferase domain, subdomain A and B Vc3S01_A1094 PF02682 Carboxyltransferase domain, subdomain C and D Vc3S01_A1095 PF03746 LamB/YcsF family Vc3S01_A1096 PF08447 PAS fold Vc3S01_A1096 PF00563 EAL domain Vc3S01_A1096 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1096 PF05231 MASE1 Vc3S01_A1096 PF08448 PAS fold Vc3S01_A1096 PF13426 PAS domain Vc3S01_A1097 PF16363 GDP-mannose 4,6 dehydratase Vc3S01_A1099 PF07715 TonB-dependent Receptor Plug Domain Vc3S01_A1099 PF00593 TonB dependent receptor Vc3S01_A1099 PF04886 PT repeat Vc3S01_A1100 PF03466 LysR substrate binding domain Vc3S01_A1100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1101 PF13607 Succinyl-CoA ligase like flavodoxin domain Vc3S01_A1101 PF13380 CoA binding domain Vc3S01_A1101 PF00583 Acetyltransferase (GNAT) family Vc3S01_A1102 PF05036 Sporulation related domain Vc3S01_A1103 PF01820 D-ala D-ala ligase N-terminus Vc3S01_A1103 PF07478 D-ala D-ala ligase C-terminus Vc3S01_A1105 PF01253 Translation initiation factor SUI1 Vc3S01_A1112 PF03701 Uncharacterised protein family (UPF0181) Vc3S01_A1115 PF00072 Response regulator receiver domain Vc3S01_A1115 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_A1117 PF02233 NAD(P) transhydrogenase beta subunit Vc3S01_A1118 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Vc3S01_A1118 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Vc3S01_A1118 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Vc3S01_A1121 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1121 PF00072 Response regulator receiver domain Vc3S01_A1122 PF01590 GAF domain Vc3S01_A1122 PF00563 EAL domain Vc3S01_A1122 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1122 PF00360 Phytochrome region Vc3S01_A1124 PF00005 ABC transporter Vc3S01_A1124 PF03459 TOBE domain Vc3S01_A1125 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A1127 PF07685 CobB/CobQ-like glutamine amidotransferase domain Vc3S01_A1127 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Vc3S01_A1128 PF04076 Bacterial OB fold (BOF) protein Vc3S01_A1131 PF00155 Aminotransferase class I and II Vc3S01_A1132 PF12833 Helix-turn-helix domain Vc3S01_A1133 PF01554 MatE Vc3S01_A1135 PF03477 ATP cone domain Vc3S01_A1135 PF13597 Anaerobic ribonucleoside-triphosphate reductase Vc3S01_A1140 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_A1140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Vc3S01_A1146 PF07690 Major Facilitator Superfamily Vc3S01_A1147 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A1147 PF00072 Response regulator receiver domain Vc3S01_A1148 PF05231 MASE1 Vc3S01_A1148 PF07730 Histidine kinase Vc3S01_A1148 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1149 PF07690 Major Facilitator Superfamily Vc3S01_A1150 PF01238 Phosphomannose isomerase type I Vc3S01_A1152 PF01594 AI-2E family transporter Vc3S01_A1154 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A1154 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_A1161 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Vc3S01_A1161 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Vc3S01_A1162 PF00085 Thioredoxin Vc3S01_A1163 PF07690 Major Facilitator Superfamily Vc3S01_A1165 PF01554 MatE Vc3S01_A1169 PF17200 Single Cache domain 2 Vc3S01_A1169 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A1169 PF00672 HAMP domain Vc3S01_A1170 PF03605 Anaerobic c4-dicarboxylate membrane transporter Vc3S01_A1173 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Vc3S01_A1173 PF14824 Sirohaem biosynthesis protein central Vc3S01_A1173 PF10414 Sirohaem synthase dimerisation region Vc3S01_A1174 PF01226 Formate/nitrite transporter Vc3S01_A1175 PF13806 Rieske-like [2Fe-2S] domain Vc3S01_A1176 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Vc3S01_A1176 PF04324 BFD-like [2Fe-2S] binding domain Vc3S01_A1176 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Vc3S01_A1176 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_A1176 PF18267 Rubredoxin NAD+ reductase C-terminal domain Vc3S01_A1177 PF01156 Inosine-uridine preferring nucleoside hydrolase Vc3S01_A1178 PF17152 Periplasmic sensor domain Vc3S01_A1178 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1185 PF09154 Domain of unknown function (DUF1939) Vc3S01_A1185 PF00128 Alpha amylase, catalytic domain Vc3S01_A1187 PF13462 Thioredoxin Vc3S01_A1189 PF09330 D-lactate dehydrogenase, membrane binding Vc3S01_A1189 PF01565 FAD binding domain Vc3S01_A1190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1190 PF03466 LysR substrate binding domain Vc3S01_A1192 PF05762 VWA domain containing CoxE-like protein Vc3S01_A1193 PF17868 AAA lid domain Vc3S01_A1193 PF07728 AAA domain (dynein-related subfamily) Vc3S01_A1193 PF12592 Protein of unknown function (DUF3763) Vc3S01_A1195 PF01212 Beta-eliminating lyase Vc3S01_A1196 PF00034 Cytochrome c Vc3S01_A1197 PF03606 C4-dicarboxylate anaerobic carrier Vc3S01_A1200 PF07690 Major Facilitator Superfamily Vc3S01_A1202 PF08212 Lipocalin-like domain Vc3S01_A1208 PF00704 Glycosyl hydrolases family 18 Vc3S01_A1210 PF13476 AAA domain Vc3S01_A1211 PF00149 Calcineurin-like phosphoesterase Vc3S01_A1211 PF12320 Type 5 capsule protein repressor C-terminal domain Vc3S01_A1214 PF03527 RHS protein Vc3S01_A1216 PF04717 Type VI secretion system, phage-baseplate injector Vc3S01_A1218 PF17871 AAA lid domain Vc3S01_A1218 PF10431 C-terminal, D2-small domain, of ClpB protein Vc3S01_A1218 PF07724 AAA domain (Cdc48 subfamily) Vc3S01_A1218 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_A1230 PF00691 OmpA family Vc3S01_A1230 PF13677 Membrane MotB of proton-channel complex MotA/MotB Vc3S01_A1234 PF03793 PASTA domain Vc3S01_A1234 PF00069 Protein kinase domain Vc3S01_A1240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_A1241 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Vc3S01_A1243 PF01757 Acyltransferase family Vc3S01_A1246 PF13187 4Fe-4S dicluster domain Vc3S01_A1246 PF01645 Conserved region in glutamate synthase Vc3S01_A1248 PF00753 Metallo-beta-lactamase superfamily Vc3S01_A1249 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Vc3S01_A1252 PF00171 Aldehyde dehydrogenase family Vc3S01_A1256 PF00892 EamA-like transporter family Vc3S01_A1257 PF00893 Small Multidrug Resistance protein Vc3S01_A1258 PF07504 Fungalysin/Thermolysin Propeptide Motif Vc3S01_A1258 PF03413 Peptidase propeptide and YPEB domain Vc3S01_A1258 PF01447 Thermolysin metallopeptidase, catalytic domain Vc3S01_A1258 PF02868 Thermolysin metallopeptidase, alpha-helical domain Vc3S01_A1258 PF04151 Bacterial pre-peptidase C-terminal domain Vc3S01_A1261 PF01569 PAP2 superfamily Vc3S01_A1264 PF00892 EamA-like transporter family Vc3S01_A1266 PF07963 Prokaryotic N-terminal methylation motif Vc3S01_A1266 PF08334 Type II secretion system (T2SS), protein G Vc3S01_A1267 PF00072 Response regulator receiver domain Vc3S01_A1267 PF01584 CheW-like domain Vc3S01_A1268 PF00881 Nitroreductase family Vc3S01_A1269 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A1269 PF00072 Response regulator receiver domain Vc3S01_A1270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1270 PF03466 LysR substrate binding domain Vc3S01_A1271 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1271 PF17158 Membrane-associated sensor, integral membrane domain Vc3S01_A1272 PF00072 Response regulator receiver domain Vc3S01_A1272 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A1273 PF00563 EAL domain Vc3S01_A1273 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1273 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A1273 PF13188 PAS domain Vc3S01_A1274 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A1274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1274 PF09456 RcsC Alpha-Beta-Loop (ABL) Vc3S01_A1274 PF00072 Response regulator receiver domain Vc3S01_A1275 PF00563 EAL domain Vc3S01_A1275 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A1275 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1277 PF07715 TonB-dependent Receptor Plug Domain Vc3S01_A1277 PF00593 TonB dependent receptor Vc3S01_A1291 PF01037 Lrp/AsnC ligand binding domain Vc3S01_A1298 PF00069 Protein kinase domain Vc3S01_A1303 PF04717 Type VI secretion system, phage-baseplate injector Vc3S01_A1304 PF05638 Type VI secretion system effector, Hcp Vc3S01_A1305 PF10431 C-terminal, D2-small domain, of ClpB protein Vc3S01_A1305 PF17871 AAA lid domain Vc3S01_A1305 PF07724 AAA domain (Cdc48 subfamily) Vc3S01_A1305 PF00004 ATPase family associated with various cellular activities (AAA) Vc3S01_A1306 PF01590 GAF domain Vc3S01_A1306 PF02954 Bacterial regulatory protein, Fis family Vc3S01_A1306 PF00158 Sigma-54 interaction domain Vc3S01_A1307 PF00691 OmpA family Vc3S01_A1312 PF01476 LysM domain Vc3S01_A1312 PF08525 Opacity-associated protein A N-terminal motif Vc3S01_A1312 PF01551 Peptidase family M23 Vc3S01_A1313 PF01926 50S ribosome-binding GTPase Vc3S01_A1314 PF00155 Aminotransferase class I and II Vc3S01_A1315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1315 PF00072 Response regulator receiver domain Vc3S01_A1319 PF03606 C4-dicarboxylate anaerobic carrier Vc3S01_A1320 PF04011 LemA family Vc3S01_A1321 PF01435 Peptidase family M48 Vc3S01_A1324 PF08774 VRR-NUC domain Vc3S01_A1324 PF18081 Fanconi anemia-associated nuclease SAP domain Vc3S01_A1326 PF04055 Radical SAM superfamily Vc3S01_A1326 PF13186 Iron-sulfur cluster-binding domain Vc3S01_A1327 PF03781 Sulfatase-modifying factor enzyme 1 Vc3S01_A1330 PF04076 Bacterial OB fold (BOF) protein Vc3S01_A1331 PF00781 Diacylglycerol kinase catalytic domain Vc3S01_A1332 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1332 PF03466 LysR substrate binding domain Vc3S01_A1333 PF01872 RibD C-terminal domain Vc3S01_A1333 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Vc3S01_A1334 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Vc3S01_A1334 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Vc3S01_A1335 PF02874 ATP synthase alpha/beta family, beta-barrel domain Vc3S01_A1335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Vc3S01_A1336 PF00231 ATP synthase Vc3S01_A1337 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Vc3S01_A1337 PF00306 ATP synthase alpha/beta chain, C terminal domain Vc3S01_A1337 PF02874 ATP synthase alpha/beta family, beta-barrel domain Vc3S01_A1338 PF00213 ATP synthase delta (OSCP) subunit Vc3S01_A1339 PF00430 ATP synthase B/B' CF(0) Vc3S01_A1340 PF00137 ATP synthase subunit C Vc3S01_A1341 PF00119 ATP synthase A chain Vc3S01_A1345 PF00092 von Willebrand factor type A domain Vc3S01_A1348 PF17863 AAA lid domain Vc3S01_A1348 PF07726 ATPase family associated with various cellular activities (AAA) Vc3S01_A1350 PF00884 Sulfatase Vc3S01_A1351 PF00884 Sulfatase Vc3S01_A1352 PF00072 Response regulator receiver domain Vc3S01_A1352 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_A1353 PF16750 Sensor domain of 2-component histidine kinase Vc3S01_A1353 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A1353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1353 PF00672 HAMP domain Vc3S01_A1357 PF00072 Response regulator receiver domain Vc3S01_A1357 PF01627 Hpt domain Vc3S01_A1357 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1357 PF00672 HAMP domain Vc3S01_A1357 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A1358 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Vc3S01_A1359 PF02142 MGS-like domain Vc3S01_A1360 PF13361 UvrD-like helicase C-terminal domain Vc3S01_A1360 PF00580 UvrD/REP helicase N-terminal domain Vc3S01_A1360 PF12462 DNA helicase IV / RNA helicase N terminal Vc3S01_A1361 PF12805 FUSC-like inner membrane protein yccS Vc3S01_A1367 PF13411 MerR HTH family regulatory protein Vc3S01_A1368 PF00005 ABC transporter Vc3S01_A1369 PF01032 FecCD transport family Vc3S01_A1370 PF01032 FecCD transport family Vc3S01_A1371 PF01497 Periplasmic binding protein Vc3S01_A1374 PF01048 Phosphorylase superfamily Vc3S01_A1375 PF04973 Nicotinamide mononucleotide transporter Vc3S01_A1377 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_A1378 PF00294 pfkB family carbohydrate kinase Vc3S01_A1379 PF13407 Periplasmic binding protein domain Vc3S01_A1380 PF02653 Branched-chain amino acid transport system / permease component Vc3S01_A1381 PF00005 ABC transporter Vc3S01_A1382 PF05025 RbsD / FucU transport protein family Vc3S01_A1383 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1383 PF00563 EAL domain Vc3S01_A1384 PF01048 Phosphorylase superfamily Vc3S01_A1387 PF01177 Asp/Glu/Hydantoin racemase Vc3S01_A1388 PF00293 NUDIX domain Vc3S01_A1393 PF09335 SNARE associated Golgi protein Vc3S01_A1398 PF04116 Fatty acid hydroxylase superfamily Vc3S01_A1401 PF00072 Response regulator receiver domain Vc3S01_A1401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1401 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A1401 PF09308 LuxQ, periplasmic Vc3S01_A1402 PF00034 Cytochrome c Vc3S01_A1402 PF03150 Di-haem cytochrome c peroxidase Vc3S01_A1403 PF00072 Response regulator receiver domain Vc3S01_A1403 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1403 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A1403 PF09456 RcsC Alpha-Beta-Loop (ABL) Vc3S01_A1404 PF01590 GAF domain Vc3S01_A1404 PF00360 Phytochrome region Vc3S01_A1404 PF00563 EAL domain Vc3S01_A1404 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1405 PF00072 Response regulator receiver domain Vc3S01_A1405 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A1408 PF16200 C-terminal region of band_7 Vc3S01_A1408 PF01145 SPFH domain / Band 7 family Vc3S01_A1409 PF00881 Nitroreductase family Vc3S01_A1410 PF00005 ABC transporter Vc3S01_A1410 PF00571 CBS domain Vc3S01_A1411 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A1412 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Vc3S01_A1413 PF05199 GMC oxidoreductase Vc3S01_A1413 PF00732 GMC oxidoreductase Vc3S01_A1414 PF00171 Aldehyde dehydrogenase family Vc3S01_A1415 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_A1415 PF13977 BetI-type transcriptional repressor, C-terminal Vc3S01_A1416 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1416 PF07694 5TMR of 5TMR-LYT Vc3S01_A1421 PF13737 Transposase DDE domain Vc3S01_A1424 PF13488 Glycine zipper Vc3S01_A1424 PF00691 OmpA family Vc3S01_A1431 PF00437 Type II/IV secretion system protein Vc3S01_A1432 PF10609 NUBPL iron-transfer P-loop NTPase Vc3S01_A1434 PF00263 Bacterial type II and III secretion system protein Vc3S01_A1434 PF04972 BON domain Vc3S01_A1434 PF13629 Pilus formation protein N terminal region Vc3S01_A1438 PF03466 LysR substrate binding domain Vc3S01_A1438 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1439 PF12146 Serine aminopeptidase, S33 Vc3S01_A1442 PF00478 IMP dehydrogenase / GMP reductase domain Vc3S01_A1443 PF03853 YjeF-related protein N-terminus Vc3S01_A1443 PF01256 Carbohydrate kinase Vc3S01_A1445 PF00072 Response regulator receiver domain Vc3S01_A1446 PF00248 Aldo/keto reductase family Vc3S01_A1449 PF00654 Voltage gated chloride channel Vc3S01_A1451 PF01566 Natural resistance-associated macrophage protein Vc3S01_A1453 PF01227 GTP cyclohydrolase I Vc3S01_A1455 PF00994 Probable molybdopterin binding domain Vc3S01_A1455 PF03453 MoeA N-terminal region (domain I and II) Vc3S01_A1455 PF03454 MoeA C-terminal region (domain IV) Vc3S01_A1456 PF00899 ThiF family Vc3S01_A1457 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Vc3S01_A1458 PF00175 Oxidoreductase NAD-binding domain Vc3S01_A1459 PF04443 Acyl-protein synthetase, LuxE Vc3S01_A1460 PF00296 Luciferase-like monooxygenase Vc3S01_A1461 PF00296 Luciferase-like monooxygenase Vc3S01_A1462 PF02273 Acyl transferase Vc3S01_A1463 PF05893 Acyl-CoA reductase (LuxC) Vc3S01_A1467 PF00581 Rhodanese-like domain Vc3S01_A1468 PF00563 EAL domain Vc3S01_A1468 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1468 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A1469 PF08329 Chitinase A, N-terminal domain Vc3S01_A1469 PF00704 Glycosyl hydrolases family 18 Vc3S01_A1471 PF00923 Transaldolase/Fructose-6-phosphate aldolase Vc3S01_A1472 PF02779 Transketolase, pyrimidine binding domain Vc3S01_A1472 PF00456 Transketolase, thiamine diphosphate binding domain Vc3S01_A1472 PF02780 Transketolase, C-terminal domain Vc3S01_A1474 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A1474 PF00672 HAMP domain Vc3S01_A1475 PF07690 Major Facilitator Superfamily Vc3S01_A1476 PF00793 DAHP synthetase I family Vc3S01_A1477 PF01389 OmpA-like transmembrane domain Vc3S01_A1477 PF00691 OmpA family Vc3S01_A1478 PF01040 UbiA prenyltransferase family Vc3S01_A1479 PF02628 Cytochrome oxidase assembly protein Vc3S01_A1483 PF00510 Cytochrome c oxidase subunit III Vc3S01_A1484 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Vc3S01_A1485 PF00115 Cytochrome C and Quinol oxidase polypeptide I Vc3S01_A1486 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Vc3S01_A1486 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Vc3S01_A1487 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Vc3S01_A1487 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Vc3S01_A1487 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Vc3S01_A1487 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Vc3S01_A1489 PF01810 LysE type translocator Vc3S01_A1493 PF01557 Fumarylacetoacetate (FAA) hydrolase family Vc3S01_A1496 PF00892 EamA-like transporter family Vc3S01_A1497 PF00462 Glutaredoxin Vc3S01_A1500 PF07690 Major Facilitator Superfamily Vc3S01_A1501 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1501 PF03466 LysR substrate binding domain Vc3S01_A1502 PF00563 EAL domain Vc3S01_A1502 PF08448 PAS fold Vc3S01_A1502 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1502 PF08447 PAS fold Vc3S01_A1503 PF01476 LysM domain Vc3S01_A1503 PF08525 Opacity-associated protein A N-terminal motif Vc3S01_A1503 PF01551 Peptidase family M23 Vc3S01_A1508 PF02743 Cache domain Vc3S01_A1508 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A1508 PF00672 HAMP domain Vc3S01_A1510 PF03222 Tryptophan/tyrosine permease family Vc3S01_A1517 PF00107 Zinc-binding dehydrogenase Vc3S01_A1517 PF08240 Alcohol dehydrogenase GroES-like domain Vc3S01_A1518 PF02378 Phosphotransferase system, EIIC Vc3S01_A1518 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Vc3S01_A1519 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Vc3S01_A1520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_A1523 PF01638 HxlR-like helix-turn-helix Vc3S01_A1526 PF01758 Sodium Bile acid symporter family Vc3S01_A1529 PF01161 Phosphatidylethanolamine-binding protein Vc3S01_A1530 PF01042 Endoribonuclease L-PSP Vc3S01_A1531 PF10282 Lactonase, 7-bladed beta-propeller Vc3S01_A1532 PF00728 Glycosyl hydrolase family 20, catalytic domain Vc3S01_A1532 PF02838 Glycosyl hydrolase family 20, domain 2 Vc3S01_A1533 PF01081 KDPG and KHG aldolase Vc3S01_A1534 PF00294 pfkB family carbohydrate kinase Vc3S01_A1535 PF00474 Sodium:solute symporter family Vc3S01_A1537 PF07969 Amidohydrolase family Vc3S01_A1539 PF01380 SIS domain Vc3S01_A1539 PF01418 Helix-turn-helix domain, rpiR family Vc3S01_A1539 PF02685 Glucokinase Vc3S01_A1540 PF00672 HAMP domain Vc3S01_A1540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A1542 PF00005 ABC transporter Vc3S01_A1545 PF01979 Amidohydrolase family Vc3S01_A1547 PF01568 Molydopterin dinucleotide binding domain Vc3S01_A1547 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Vc3S01_A1547 PF00384 Molybdopterin oxidoreductase Vc3S01_A1547 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_A1547 PF12838 4Fe-4S dicluster domain Vc3S01_A1551 PF00873 AcrB/AcrD/AcrF family Vc3S01_A1560 PF00293 NUDIX domain Vc3S01_A1563 PF00034 Cytochrome c Vc3S01_A1563 PF03150 Di-haem cytochrome c peroxidase Vc3S01_A1563 PF14376 Haem-binding domain Vc3S01_A1565 PF13302 Acetyltransferase (GNAT) domain Vc3S01_A1567 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Vc3S01_A1569 PF00873 AcrB/AcrD/AcrF family Vc3S01_A1570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A1570 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_A1572 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Vc3S01_A1572 PF00326 Prolyl oligopeptidase family Vc3S01_A1573 PF16326 ABC transporter C-terminal domain Vc3S01_A1573 PF00005 ABC transporter Vc3S01_A1573 PF12848 ABC transporter Vc3S01_A1574 PF00005 ABC transporter Vc3S01_A1574 PF12848 ABC transporter Vc3S01_A1576 PF00582 Universal stress protein family Vc3S01_A1577 PF08220 DeoR-like helix-turn-helix domain Vc3S01_A1577 PF00455 DeoR C terminal sensor domain Vc3S01_A1578 PF03009 Glycerophosphoryl diester phosphodiesterase family Vc3S01_A1579 PF13416 Bacterial extracellular solute-binding protein Vc3S01_A1580 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A1581 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A1582 PF17912 MalK OB fold domain Vc3S01_A1582 PF00005 ABC transporter Vc3S01_A1587 PF01047 MarR family Vc3S01_A1589 PF07683 Cobalamin synthesis protein cobW C-terminal domain Vc3S01_A1589 PF02492 CobW/HypB/UreG, nucleotide-binding domain Vc3S01_A1590 PF00132 Bacterial transferase hexapeptide (six repeats) Vc3S01_A1591 PF01979 Amidohydrolase family Vc3S01_A1593 PF01734 Patatin-like phospholipase Vc3S01_A1595 PF02678 Pirin Vc3S01_A1595 PF05726 Pirin C-terminal cupin domain Vc3S01_A1596 PF00313 'Cold-shock' DNA-binding domain Vc3S01_A1600 PF00962 Adenosine/AMP deaminase Vc3S01_A1601 PF00072 Response regulator receiver domain Vc3S01_A1601 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1602 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1602 PF03466 LysR substrate binding domain Vc3S01_A1605 PF08534 Redoxin Vc3S01_A1605 PF00462 Glutaredoxin Vc3S01_A1608 PF07943 Penicillin-binding protein 5, C-terminal domain Vc3S01_A1608 PF00768 D-alanyl-D-alanine carboxypeptidase Vc3S01_A1610 PF02028 BCCT, betaine/carnitine/choline family transporter Vc3S01_A1611 PF02798 Glutathione S-transferase, N-terminal domain Vc3S01_A1612 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_A1612 PF02909 Tetracyclin repressor-like, C-terminal domain Vc3S01_A1613 PF01872 RibD C-terminal domain Vc3S01_A1633 PF00155 Aminotransferase class I and II Vc3S01_A1642 PF00270 DEAD/DEAH box helicase Vc3S01_A1642 PF00271 Helicase conserved C-terminal domain Vc3S01_A1644 PF03466 LysR substrate binding domain Vc3S01_A1644 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1647 PF03466 LysR substrate binding domain Vc3S01_A1647 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1648 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Vc3S01_A1650 PF05816 Toxic anion resistance protein (TelA) Vc3S01_A1652 PF17864 RuvB AAA lid domain Vc3S01_A1652 PF05496 Holliday junction DNA helicase RuvB P-loop domain Vc3S01_A1652 PF05491 RuvB C-terminal winged helix domain Vc3S01_A1655 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Vc3S01_A1656 PF04228 Putative neutral zinc metallopeptidase Vc3S01_A1658 PF03466 LysR substrate binding domain Vc3S01_A1658 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1661 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1661 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A1661 PF00563 EAL domain Vc3S01_A1662 PF17763 Glutaminase/Asparaginase C-terminal domain Vc3S01_A1662 PF00710 Asparaginase, N-terminal Vc3S01_A1663 PF03618 Kinase/pyrophosphorylase Vc3S01_A1664 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Vc3S01_A1664 PF02896 PEP-utilising enzyme, TIM barrel domain Vc3S01_A1664 PF00391 PEP-utilising enzyme, mobile domain Vc3S01_A1666 PF00072 Response regulator receiver domain Vc3S01_A1666 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A1667 PF00579 tRNA synthetases class I (W and Y) Vc3S01_A1670 PF12833 Helix-turn-helix domain Vc3S01_A1672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1672 PF03466 LysR substrate binding domain Vc3S01_A1674 PF03466 LysR substrate binding domain Vc3S01_A1674 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A1676 PF00873 AcrB/AcrD/AcrF family Vc3S01_A1677 PF02321 Outer membrane efflux protein Vc3S01_A1679 PF02600 Disulfide bond formation protein DsbB Vc3S01_A1680 PF03616 Sodium/glutamate symporter Vc3S01_A1682 PF00563 EAL domain Vc3S01_A1682 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1682 PF03707 Bacterial signalling protein N terminal repeat Vc3S01_A1684 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A1685 PF02837 Glycosyl hydrolases family 2, sugar binding domain Vc3S01_A1685 PF00703 Glycosyl hydrolases family 2 Vc3S01_A1685 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Vc3S01_A1685 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Vc3S01_A1686 PF02028 BCCT, betaine/carnitine/choline family transporter Vc3S01_A1687 PF00501 AMP-binding enzyme Vc3S01_A1687 PF13193 AMP-binding enzyme C-terminal domain Vc3S01_A1697 PF00437 Type II/IV secretion system protein Vc3S01_A1700 PF04972 BON domain Vc3S01_A1700 PF00263 Bacterial type II and III secretion system protein Vc3S01_A1700 PF13629 Pilus formation protein N terminal region Vc3S01_A1711 PF00873 AcrB/AcrD/AcrF family Vc3S01_A1713 PF00873 AcrB/AcrD/AcrF family Vc3S01_A1714 PF13533 Biotin-lipoyl like Vc3S01_A1715 PF13091 PLD-like domain Vc3S01_A1720 PF09278 MerR, DNA binding Vc3S01_A1720 PF00376 MerR family regulatory protein Vc3S01_A1721 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1721 PF03466 LysR substrate binding domain Vc3S01_A1723 PF13378 Enolase C-terminal domain-like Vc3S01_A1723 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Vc3S01_A1724 PF00679 Elongation factor G C-terminus Vc3S01_A1724 PF14492 Elongation Factor G, domain II Vc3S01_A1724 PF03764 Elongation factor G, domain IV Vc3S01_A1724 PF00009 Elongation factor Tu GTP binding domain Vc3S01_A1724 PF03144 Elongation factor Tu domain 2 Vc3S01_A1728 PF02001 Protein of unknown function DUF134 Vc3S01_A1731 PF00528 Binding-protein-dependent transport system inner membrane component Vc3S01_A1732 PF00571 CBS domain Vc3S01_A1732 PF00005 ABC transporter Vc3S01_A1735 PF01048 Phosphorylase superfamily Vc3S01_A1736 PF00582 Universal stress protein family Vc3S01_A1737 PF03466 LysR substrate binding domain Vc3S01_A1737 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1739 PF01464 Transglycosylase SLT domain Vc3S01_A1739 PF00497 Bacterial extracellular solute-binding proteins, family 3 Vc3S01_A1741 PF06942 GlpM protein Vc3S01_A1744 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Vc3S01_A1744 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Vc3S01_A1746 PF00857 Isochorismatase family Vc3S01_A1747 PF00080 Copper/zinc superoxide dismutase (SODC) Vc3S01_A1749 PF06628 Catalase-related immune-responsive Vc3S01_A1749 PF00199 Catalase Vc3S01_A1750 PF06628 Catalase-related immune-responsive Vc3S01_A1750 PF00199 Catalase Vc3S01_A1751 PF13737 Transposase DDE domain Vc3S01_A1754 PF00455 DeoR C terminal sensor domain Vc3S01_A1754 PF08220 DeoR-like helix-turn-helix domain Vc3S01_A1755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_A1756 PF01625 Peptide methionine sulfoxide reductase Vc3S01_A1756 PF01641 SelR domain Vc3S01_A1759 PF07971 Glycosyl hydrolase family 92 Vc3S01_A1759 PF17678 Glycosyl hydrolase family 92 N-terminal domain Vc3S01_A1760 PF07971 Glycosyl hydrolase family 92 Vc3S01_A1760 PF17678 Glycosyl hydrolase family 92 N-terminal domain Vc3S01_A1762 PF17678 Glycosyl hydrolase family 92 N-terminal domain Vc3S01_A1762 PF07971 Glycosyl hydrolase family 92 Vc3S01_A1763 PF17678 Glycosyl hydrolase family 92 N-terminal domain Vc3S01_A1763 PF07971 Glycosyl hydrolase family 92 Vc3S01_A1764 PF00149 Calcineurin-like phosphoesterase Vc3S01_A1764 PF02872 5'-nucleotidase, C-terminal domain Vc3S01_A1769 PF03466 LysR substrate binding domain Vc3S01_A1769 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1770 PF01810 LysE type translocator Vc3S01_A1771 PF00581 Rhodanese-like domain Vc3S01_A1773 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1773 PF03466 LysR substrate binding domain Vc3S01_A1776 PF09905 DNA-binding protein VF530 Vc3S01_A1777 PF00005 ABC transporter Vc3S01_A1777 PF12848 ABC transporter Vc3S01_A1780 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Vc3S01_A1781 PF02567 Phenazine biosynthesis-like protein Vc3S01_A1784 PF05114 Protein of unknown function (DUF692) Vc3S01_A1787 PF01654 Cytochrome bd terminal oxidase subunit I Vc3S01_A1788 PF02322 Cytochrome bd terminal oxidase subunit II Vc3S01_A1789 PF01042 Endoribonuclease L-PSP Vc3S01_A1791 PF00293 NUDIX domain Vc3S01_A1791 PF13344 Haloacid dehalogenase-like hydrolase Vc3S01_A1794 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A1794 PF00672 HAMP domain Vc3S01_A1794 PF01627 Hpt domain Vc3S01_A1794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1794 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Vc3S01_A1794 PF00072 Response regulator receiver domain Vc3S01_A1799 PF04055 Radical SAM superfamily Vc3S01_A1800 PF00923 Transaldolase/Fructose-6-phosphate aldolase Vc3S01_A1804 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A1804 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A1804 PF00672 HAMP domain Vc3S01_A1805 PF00486 Transcriptional regulatory protein, C terminal Vc3S01_A1805 PF00072 Response regulator receiver domain Vc3S01_A1807 PF00583 Acetyltransferase (GNAT) family Vc3S01_A1809 PF07690 Major Facilitator Superfamily Vc3S01_A1810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1810 PF03466 LysR substrate binding domain Vc3S01_A1811 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Vc3S01_A1813 PF00892 EamA-like transporter family Vc3S01_A1817 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_A1817 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Vc3S01_A1819 PF01594 AI-2E family transporter Vc3S01_A1820 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Vc3S01_A1823 PF00175 Oxidoreductase NAD-binding domain Vc3S01_A1823 PF00970 Oxidoreductase FAD-binding domain Vc3S01_A1825 PF09905 DNA-binding protein VF530 Vc3S01_A1826 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1826 PF03466 LysR substrate binding domain Vc3S01_A1828 PF00768 D-alanyl-D-alanine carboxypeptidase Vc3S01_A1828 PF07943 Penicillin-binding protein 5, C-terminal domain Vc3S01_A1830 PF00561 alpha/beta hydrolase fold Vc3S01_A1834 PF03441 FAD binding domain of DNA photolyase Vc3S01_A1834 PF00875 DNA photolyase Vc3S01_A1835 PF02469 Fasciclin domain Vc3S01_A1837 PF01734 Patatin-like phospholipase Vc3S01_A1838 PF01914 MarC family integral membrane protein Vc3S01_A1840 PF01914 MarC family integral membrane protein Vc3S01_A1841 PF00881 Nitroreductase family Vc3S01_A1843 PF10531 SLBB domain Vc3S01_A1843 PF18412 Outer-membrane lipoprotein Wza C-terminal domain Vc3S01_A1843 PF02563 Polysaccharide biosynthesis/export protein Vc3S01_A1844 PF01451 Low molecular weight phosphotyrosine protein phosphatase Vc3S01_A1845 PF13807 G-rich domain on putative tyrosine kinase Vc3S01_A1845 PF13614 AAA domain Vc3S01_A1845 PF02706 Chain length determinant protein Vc3S01_A1851 PF00375 Sodium:dicarboxylate symporter family Vc3S01_A1853 PF06803 Protein of unknown function (DUF1232) Vc3S01_A1854 PF07687 Peptidase dimerisation domain Vc3S01_A1854 PF01546 Peptidase family M20/M25/M40 Vc3S01_A1855 PF07670 Nucleoside recognition Vc3S01_A1856 PF07670 Nucleoside recognition Vc3S01_A1859 PF00128 Alpha amylase, catalytic domain Vc3S01_A1860 PF00912 Transglycosylase Vc3S01_A1861 PF00128 Alpha amylase, catalytic domain Vc3S01_A1861 PF02806 Alpha amylase, C-terminal all-beta domain Vc3S01_A1861 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Vc3S01_A1862 PF02446 4-alpha-glucanotransferase Vc3S01_A1863 PF00343 Carbohydrate phosphorylase Vc3S01_A1864 PF17874 MalT-like TPR region Vc3S01_A1864 PF00196 Bacterial regulatory proteins, luxR family Vc3S01_A1868 PF02630 SCO1/SenC Vc3S01_A1870 PF02378 Phosphotransferase system, EIIC Vc3S01_A1870 PF00367 phosphotransferase system, EIIB Vc3S01_A1870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Vc3S01_A1871 PF03193 RsgA GTPase Vc3S01_A1872 PF00375 Sodium:dicarboxylate symporter family Vc3S01_A1873 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Vc3S01_A1873 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Vc3S01_A1876 PF01116 Fructose-bisphosphate aldolase class-II Vc3S01_A1878 PF00294 pfkB family carbohydrate kinase Vc3S01_A1879 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Vc3S01_A1879 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Vc3S01_A1880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Vc3S01_A1880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Vc3S01_A1880 PF00205 Thiamine pyrophosphate enzyme, central domain Vc3S01_A1881 PF01261 Xylose isomerase-like TIM barrel Vc3S01_A1882 PF00083 Sugar (and other) transporter Vc3S01_A1886 PF02803 Thiolase, C-terminal domain Vc3S01_A1886 PF00108 Thiolase, N-terminal domain Vc3S01_A1887 PF01144 Coenzyme A transferase Vc3S01_A1888 PF01144 Coenzyme A transferase Vc3S01_A1890 PF08543 Phosphomethylpyrimidine kinase Vc3S01_A1892 PF13520 Amino acid permease Vc3S01_A1893 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Vc3S01_A1893 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Vc3S01_A1893 PF01276 Orn/Lys/Arg decarboxylase, major domain Vc3S01_A1896 PF03714 Bacterial pullanase-associated domain Vc3S01_A1896 PF18494 Pullulanase Ins domain Vc3S01_A1896 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Vc3S01_A1896 PF11852 Domain of unknown function (DUF3372) Vc3S01_A1896 PF17967 Pullulanase N2 domain Vc3S01_A1897 PF04231 Endonuclease I Vc3S01_A1898 PF02903 Alpha amylase, N-terminal ig-like domain Vc3S01_A1898 PF00128 Alpha amylase, catalytic domain Vc3S01_A1898 PF16657 Maltogenic Amylase, C-terminal domain Vc3S01_A1901 PF02264 LamB porin Vc3S01_A1903 PF00128 Alpha amylase, catalytic domain Vc3S01_A1903 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Vc3S01_A1904 PF00990 Diguanylate cyclase, GGDEF domain Vc3S01_A1906 PF10414 Sirohaem synthase dimerisation region Vc3S01_A1906 PF14824 Sirohaem biosynthesis protein central Vc3S01_A1906 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Vc3S01_A1907 PF17179 4Fe-4S dicluster domain Vc3S01_A1908 PF00175 Oxidoreductase NAD-binding domain Vc3S01_A1908 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Vc3S01_A1909 PF13187 4Fe-4S dicluster domain Vc3S01_A1909 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Vc3S01_A1909 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Vc3S01_A1912 PF03315 Serine dehydratase beta chain Vc3S01_A1912 PF03313 Serine dehydratase alpha chain Vc3S01_A1913 PF00474 Sodium:solute symporter family Vc3S01_A1917 PF00356 Bacterial regulatory proteins, lacI family Vc3S01_A1919 PF07690 Major Facilitator Superfamily Vc3S01_A1920 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_A1920 PF08360 QacR-like protein, C-terminal region Vc3S01_A1922 PF13533 Biotin-lipoyl like Vc3S01_A1925 PF01551 Peptidase family M23 Vc3S01_A1925 PF04225 Opacity-associated protein A LysM-like domain Vc3S01_A1928 PF01081 KDPG and KHG aldolase Vc3S01_A1929 PF00294 pfkB family carbohydrate kinase Vc3S01_A1930 PF02378 Phosphotransferase system, EIIC Vc3S01_A1930 PF00367 phosphotransferase system, EIIB Vc3S01_A1930 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Vc3S01_A1931 PF13378 Enolase C-terminal domain-like Vc3S01_A1931 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Vc3S01_A1932 PF07702 UTRA domain Vc3S01_A1932 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_A1937 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Vc3S01_A1937 PF02753 Pili assembly chaperone PapD, C-terminal domain Vc3S01_A1938 PF00577 Outer membrane usher protein Vc3S01_A1938 PF13953 PapC C-terminal domain Vc3S01_A1938 PF13954 PapC N-terminal domain Vc3S01_A1942 PF01238 Phosphomannose isomerase type I Vc3S01_A1943 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Vc3S01_A1943 PF02378 Phosphotransferase system, EIIC Vc3S01_A1943 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Vc3S01_A1944 PF00128 Alpha amylase, catalytic domain Vc3S01_A1945 PF01074 Glycosyl hydrolases family 38 N-terminal domain Vc3S01_A1945 PF07748 Glycosyl hydrolases family 38 C-terminal domain Vc3S01_A1945 PF09261 Alpha mannosidase middle domain Vc3S01_A1946 PF02378 Phosphotransferase system, EIIC Vc3S01_A1947 PF01380 SIS domain Vc3S01_A1947 PF01418 Helix-turn-helix domain, rpiR family Vc3S01_A1951 PF05193 Peptidase M16 inactive domain Vc3S01_A1951 PF00675 Insulinase (Peptidase family M16) Vc3S01_A1952 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A1952 PF00672 HAMP domain Vc3S01_A1952 PF02743 Cache domain Vc3S01_A1961 PF00535 Glycosyl transferase family 2 Vc3S01_A1964 PF00857 Isochorismatase family Vc3S01_A1965 PF00005 ABC transporter Vc3S01_A1973 PF02566 OsmC-like protein Vc3S01_A1974 PF01047 MarR family Vc3S01_A1975 PF00578 AhpC/TSA family Vc3S01_A1975 PF10417 C-terminal domain of 1-Cys peroxiredoxin Vc3S01_A1976 PF07992 Pyridine nucleotide-disulphide oxidoreductase Vc3S01_A1976 PF13192 Thioredoxin domain Vc3S01_A1978 PF02447 GntP family permease Vc3S01_A1979 PF01261 Xylose isomerase-like TIM barrel Vc3S01_A1980 PF00596 Class II Aldolase and Adducin N-terminal domain Vc3S01_A1981 PF17042 Nucleotide-binding C-terminal domain Vc3S01_A1981 PF07005 Sugar-binding N-terminal domain Vc3S01_A1982 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Vc3S01_A1982 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Vc3S01_A1983 PF00455 DeoR C terminal sensor domain Vc3S01_A1983 PF08220 DeoR-like helix-turn-helix domain Vc3S01_A1985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Vc3S01_A1985 PF00672 HAMP domain Vc3S01_A1985 PF02743 Cache domain Vc3S01_A1986 PF03466 LysR substrate binding domain Vc3S01_A1986 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A1987 PF02056 Family 4 glycosyl hydrolase Vc3S01_A1987 PF11975 Family 4 glycosyl hydrolase C-terminal domain Vc3S01_A1989 PF01810 LysE type translocator Vc3S01_A1990 PF13404 AsnC-type helix-turn-helix domain Vc3S01_A1990 PF01037 Lrp/AsnC ligand binding domain Vc3S01_A1992 PF12833 Helix-turn-helix domain Vc3S01_A1994 PF03475 3-alpha domain Vc3S01_A1994 PF03473 MOSC domain Vc3S01_A1995 PF13673 Acetyltransferase (GNAT) domain Vc3S01_A1997 PF06629 MltA-interacting protein MipA Vc3S01_A1998 PF00270 DEAD/DEAH box helicase Vc3S01_A1998 PF00271 Helicase conserved C-terminal domain Vc3S01_A2001 PF03466 LysR substrate binding domain Vc3S01_A2001 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A2002 PF03786 D-mannonate dehydratase (UxuA) Vc3S01_A2003 PF00392 Bacterial regulatory proteins, gntR family Vc3S01_A2003 PF07729 FCD domain Vc3S01_A2004 PF03480 Bacterial extracellular solute-binding protein, family 7 Vc3S01_A2005 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Vc3S01_A2006 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Vc3S01_A2007 PF08125 Mannitol dehydrogenase C-terminal domain Vc3S01_A2007 PF01232 Mannitol dehydrogenase Rossmann domain Vc3S01_A2008 PF02614 Glucuronate isomerase Vc3S01_A2009 PF00294 pfkB family carbohydrate kinase Vc3S01_A2010 PF01081 KDPG and KHG aldolase Vc3S01_A2011 PF10688 Bacterial inner membrane protein Vc3S01_A2012 PF00933 Glycosyl hydrolase family 3 N terminal domain Vc3S01_A2015 PF01476 LysM domain Vc3S01_A2015 PF07979 Intimin C-type lectin domain Vc3S01_A2015 PF11924 Inverse autotransporter, beta-domain Vc3S01_A2015 PF02369 Bacterial Ig-like domain (group 1) Vc3S01_A2015 PF02368 Bacterial Ig-like domain (group 2) Vc3S01_A2017 PF00664 ABC transporter transmembrane region Vc3S01_A2017 PF00005 ABC transporter Vc3S01_A2020 PF01037 Lrp/AsnC ligand binding domain Vc3S01_A2028 PF00474 Sodium:solute symporter family Vc3S01_A2030 PF01619 Proline dehydrogenase Vc3S01_A2030 PF00171 Aldehyde dehydrogenase family Vc3S01_A2030 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Vc3S01_A2030 PF14850 DNA-binding domain of Proline dehydrogenase Vc3S01_A2031 PF12833 Helix-turn-helix domain Vc3S01_A2033 PF01243 Pyridoxamine 5'-phosphate oxidase Vc3S01_A2033 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Vc3S01_A2034 PF02743 Cache domain Vc3S01_A2034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Vc3S01_A2034 PF00512 His Kinase A (phospho-acceptor) domain Vc3S01_A2035 PF02954 Bacterial regulatory protein, Fis family Vc3S01_A2035 PF00072 Response regulator receiver domain Vc3S01_A2035 PF00158 Sigma-54 interaction domain Vc3S01_A2036 PF00529 HlyD membrane-fusion protein of T1SS Vc3S01_A2039 PF00664 ABC transporter transmembrane region Vc3S01_A2039 PF00005 ABC transporter Vc3S01_A2039 PF03412 Peptidase C39 family Vc3S01_A2045 PF03358 NADPH-dependent FMN reductase Vc3S01_A2046 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Vc3S01_A2047 PF00246 Zinc carboxypeptidase Vc3S01_A2048 PF01418 Helix-turn-helix domain, rpiR family Vc3S01_A2048 PF01380 SIS domain Vc3S01_A2049 PF01380 SIS domain Vc3S01_A2050 PF02378 Phosphotransferase system, EIIC Vc3S01_A2050 PF00367 phosphotransferase system, EIIB Vc3S01_A2051 PF00267 Gram-negative porin Vc3S01_A2053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_A2053 PF03466 LysR substrate binding domain Vc3S01_A2054 PF00132 Bacterial transferase hexapeptide (six repeats) Vc3S01_A2056 PF05127 Helicase Vc3S01_A2056 PF13718 GNAT acetyltransferase 2 Vc3S01_A2057 PF08775 ParB family Vc3S01_A2057 PF02195 ParB-like nuclease domain Vc3S01_p10003 PF04754 Putative transposase, YhgA-like Vc3S01_p10004 PF13614 AAA domain Vc3S01_p10010 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system Vc3S01_p10014 PF13737 Transposase DDE domain Vc3S01_p10020 PF13737 Transposase DDE domain Vc3S01_p10023 PF13737 Transposase DDE domain Vc3S01_p10024 PF02384 N-6 DNA Methylase Vc3S01_p10024 PF07669 Eco57I restriction-modification methylase Vc3S01_p10034 PF08401 Domain of unknown function (DUF1738) Vc3S01_p10034 PF13362 Toprim domain Vc3S01_p10034 PF18818 Metallopeptidase superfamily domain Vc3S01_p10041 PF01751 Toprim domain Vc3S01_p10041 PF01131 DNA topoisomerase Vc3S01_p10054 PF01464 Transglycosylase SLT domain Vc3S01_p10055 PF10502 Signal peptidase, peptidase S26 Vc3S01_p10070 PF00437 Type II/IV secretion system protein Vc3S01_p10075 PF03743 Bacterial conjugation TrbI-like protein Vc3S01_p10077 PF03524 Conjugal transfer protein Vc3S01_p10080 PF00437 Type II/IV secretion system protein Vc3S01_p10082 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Vc3S01_p10083 PF05101 Type IV secretory pathway, VirB3-like protein Vc3S01_p10084 PF04956 TrbC/VIRB2 family Vc3S01_p20007 PF14319 Transposase zinc-binding domain Vc3S01_p20007 PF04986 Putative transposase Vc3S01_p20008 PF13495 Phage integrase, N-terminal SAM-like domain Vc3S01_p20008 PF00589 Phage integrase family Vc3S01_p20025 PF00580 UvrD/REP helicase N-terminal domain Vc3S01_p20025 PF13361 UvrD-like helicase C-terminal domain Vc3S01_p20043 PF00154 recA bacterial DNA recombination protein Vc3S01_p20053 PF13614 AAA domain Vc3S01_p20065 PF01051 Initiator Replication protein Vc3S01_p20155 PF00809 Pterin binding enzyme Vc3S01_p20156 PF01636 Phosphotransferase enzyme family Vc3S01_p20157 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Vc3S01_p20159 PF07690 Major Facilitator Superfamily Vc3S01_p20160 PF00440 Bacterial regulatory proteins, tetR family Vc3S01_p20160 PF02909 Tetracyclin repressor-like, C-terminal domain Vc3S01_p20161 PF09278 MerR, DNA binding Vc3S01_p20161 PF00376 MerR family regulatory protein Vc3S01_p20162 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Vc3S01_p20164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Vc3S01_p20164 PF03466 LysR substrate binding domain Vc3S01_p20165 PF07690 Major Facilitator Superfamily Vc3S01_p20169 PF01751 Toprim domain Vc3S01_p20169 PF01131 DNA topoisomerase Vc3S01_p20170 PF00186 Dihydrofolate reductase Vc3S01_p20179 PF06508 Queuosine biosynthesis protein QueC Vc3S01_p20201 PF10124 Mu-like prophage major head subunit gpT Vc3S01_p30003 PF00563 EAL domain Vc3S01_p30003 PF12792 CSS motif domain associated with EAL Vc3S01_p30016 PF00239 Resolvase, N terminal domain Vc3S01_p30016 PF02796 Helix-turn-helix domain of resolvase Vc3S01_p30021 PF02796 Helix-turn-helix domain of resolvase Vc3S01_p30021 PF00239 Resolvase, N terminal domain Vc3S01_p30026 PF16868 NMT1-like family Vc3S01_p30031 PF17185 NlpE C-terminal OB domain Vc3S01_p30031 PF04170 NlpE N-terminal domain Vc3S01_p30036 PF01526 Tn3 transposase DDE domain Vc3S01_p30036 PF13700 Domain of unknown function (DUF4158) Vc3S01_p30037 PF01526 Tn3 transposase DDE domain Vc3S01_p30037 PF13700 Domain of unknown function (DUF4158) Vc3S01_p30038 PF02796 Helix-turn-helix domain of resolvase Vc3S01_p30038 PF00239 Resolvase, N terminal domain Vc3S01_p30039 PF00239 Resolvase, N terminal domain Vc3S01_p30039 PF02796 Helix-turn-helix domain of resolvase Vc3S01_p30046 PF00239 Resolvase, N terminal domain Vc3S01_p30046 PF02796 Helix-turn-helix domain of resolvase Vc3S01_p30047 PF02631 RecX family Vc3S01_p30049 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Vc3S01_p30049 PF00271 Helicase conserved C-terminal domain Vc3S01_p30049 PF08463 EcoEI R protein C-terminal Vc3S01_p30049 PF04851 Type III restriction enzyme, res subunit Vc3S01_p30052 PF00872 Transposase, Mutator family Vc3S01_p30054 PF18807 Tripartite Tc toxins repeat Vc3S01_p30054 PF14431 YwqJ-like deaminase Vc3S01_p30055 PF12255 Insecticide toxin TcdB middle/C-terminal region Vc3S01_p30055 PF12256 Insecticide toxin TcdB middle/N-terminal region Vc3S01_p30055 PF03534 Salmonella virulence plasmid 65kDa B protein Vc3S01_p30056 PF18413 Neuraminidase-like domain Vc3S01_p30056 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain Vc3S01_p30058 PF01420 Type I restriction modification DNA specificity domain Vc3S01_p30059 PF12161 HsdM N-terminal domain Vc3S01_p30059 PF02384 N-6 DNA Methylase Vc3S01_p30067 PF02796 Helix-turn-helix domain of resolvase Vc3S01_p30067 PF00239 Resolvase, N terminal domain Vc3S01_p30084 PF18821 Large polyvalent protein-associated domain 7 Vc3S01_p30084 PF03432 Relaxase/Mobilisation nuclease domain Vc3S01_p30086 PF01751 Toprim domain Vc3S01_p30086 PF01131 DNA topoisomerase Vc3S01_p30088 PF02534 Type IV secretory system Conjugative DNA transfer Vc3S01_p30089 PF00437 Type II/IV secretion system protein Vc3S01_p30091 PF03743 Bacterial conjugation TrbI-like protein Vc3S01_p30092 PF03524 Conjugal transfer protein Vc3S01_p30093 PF04335 VirB8 protein Vc3S01_p30098 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Vc3S01_p30122 PF04986 Putative transposase Vc3S01_p30122 PF14319 Transposase zinc-binding domain Vc3S01_p30125 PF13614 AAA domain Vc3S01_p30125 PF18607 ParA helix turn helix domain Vc3S01_p30130 PF04226 Transglycosylase associated protein Vc3S01_p30133 PF13737 Transposase DDE domain Vc3S01_p30134 PF13737 Transposase DDE domain Vc3S01_p40008 PF00437 Type II/IV secretion system protein Vc3S01_p40018 PF13614 AAA domain Vc3S01_p40028 PF05732 Firmicute plasmid replication protein (RepL) Vc3S01_p40031 PF05154 TM2 domain Vc3S01_p40041 PF00226 DnaJ domain Vc3S01_p40041 PF01556 DnaJ C terminal domain Vc3S01_p40041 PF00684 DnaJ central domain Vc3S01_p40074 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Vc3S01_p40096 PF01131 DNA topoisomerase Vc3S01_p40096 PF01751 Toprim domain Vc3S01_p40101 PF02534 Type IV secretory system Conjugative DNA transfer Vc3S01_p40102 PF00437 Type II/IV secretion system protein Vc3S01_p40103 PF03743 Bacterial conjugation TrbI-like protein Vc3S01_p40104 PF03524 Conjugal transfer protein Vc3S01_p40105 PF04335 VirB8 protein Vc3S01_p40108 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Vc3S01_p40111 PF01464 Transglycosylase SLT domain Vc3S01_p40114 PF00436 Single-strand binding protein family Vc3S01_p40115 PF06750 Bacterial Peptidase A24 N-terminal domain Vc3S01_p40115 PF01478 Type IV leader peptidase family Vc3S01_p40120 PF16200 C-terminal region of band_7 Vc3S01_p40120 PF01145 SPFH domain / Band 7 family