Vc3S01_0012 SM00487 DEAD-like helicases superfamily Vc3S01_0026 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0028 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_0028 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Vc3S01_0029 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0029 SM00760 Bacterial dnaA protein helix-turn-helix domain Vc3S01_0030 SM00480 DNA polymerase III beta subunit Vc3S01_0032 SM00387 Histidine kinase-like ATPases Vc3S01_0032 SM00433 TopoisomeraseII Vc3S01_0043 SM00829 Enoylreductase Vc3S01_0058 SM00876 Biotin and Thiamin Synthesis associated domain Vc3S01_0070 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_0074 SM00341 Helicase and RNase D C-terminal Vc3S01_0074 SM00487 DEAD-like helicases superfamily Vc3S01_0074 SM00490 helicase superfamily c-terminal domain Vc3S01_0074 SM00956 Vc3S01_0074 Vc3S01_0078 SM00487 DEAD-like helicases superfamily Vc3S01_0078 SM00490 helicase superfamily c-terminal domain Vc3S01_0080 SM00357 Cold shock protein domain Vc3S01_0080 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0080 SM00959 Rho termination factor, N-terminal domain Vc3S01_0092 SM01219 Vc3S01_0092 Vc3S01_0099 SM00052 Putative diguanylate phosphodiesterase Vc3S01_0099 SM00267 diguanylate cyclase Vc3S01_0099 SM00897 FIST N domain Vc3S01_0099 SM01204 Vc3S01_0099 Vc3S01_0100 SM01144 Vc3S01_0100 Vc3S01_0107 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Vc3S01_0108 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Vc3S01_0122 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0122 SM00962 SRP54-type protein, GTPase domain Vc3S01_0122 SM00963 SRP54-type protein, helical bundle domain Vc3S01_0123 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0126 SM00450 Rhodanese Homology Domain Vc3S01_0131 SM00563 Phosphate acyltransferases Vc3S01_0142 SM00360 RNA recognition motif Vc3S01_0149 SM00155 Phospholipase D. Active site motifs. Vc3S01_0156 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Vc3S01_0156 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Vc3S01_0157 SM00649 Ribosomal protein L11/L12 Vc3S01_0162 SM00663 RNA polymerase I subunit A N-terminus Vc3S01_0170 SM00986 Uracil DNA glycosylase superfamily Vc3S01_0170 SM00987 UreE urease accessory protein, C-terminal domain Vc3S01_0174 SM00411 bacterial (prokaryotic) histone like domain Vc3S01_0176 SM01209 Vc3S01_0176 Vc3S01_0176 SM01210 Vc3S01_0176 Vc3S01_0177 SM00798 AICARFT/IMPCHase bienzyme Vc3S01_0177 SM00851 MGS-like domain Vc3S01_0179 SM00422 helix_turn_helix, mercury resistance Vc3S01_0180 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_0188 SM00267 diguanylate cyclase Vc3S01_0192 SM00878 Biotin carboxylase C-terminal domain Vc3S01_0196 SM00479 Vc3S01_0196 Vc3S01_0199 SM00387 Histidine kinase-like ATPases Vc3S01_0199 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_0199 SM00448 cheY-homologous receiver domain Vc3S01_0206 SM00421 helix_turn_helix, Lux Regulon Vc3S01_0206 SM00448 cheY-homologous receiver domain Vc3S01_0213 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_0213 SM00387 Histidine kinase-like ATPases Vc3S01_0213 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_0214 SM00448 cheY-homologous receiver domain Vc3S01_0214 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_0219 SM00883 Chaperonin 10 Kd subunit Vc3S01_0224 SM00841 Elongation factor P, C-terminal Vc3S01_0224 SM01185 Vc3S01_0224 Vc3S01_0236 SM00971 Serine acetyltransferase, N-terminal Vc3S01_0239 SM00450 Rhodanese Homology Domain Vc3S01_0242 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_0242 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_0246 SM00479 Vc3S01_0246 Vc3S01_0249 SM00257 Lysin motif Vc3S01_0249 SM00646 Vc3S01_0249 Vc3S01_0250 SM00853 MutL C terminal dimerisation domain Vc3S01_0250 SM01340 Vc3S01_0250 Vc3S01_0254 SM00244 prohibitin homologues Vc3S01_0255 SM00244 prohibitin homologues Vc3S01_0257 SM00788 Adenylosuccinate synthetase Vc3S01_0258 SM00671 Sel1-like repeats. Vc3S01_0261 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_0261 SM00357 Cold shock protein domain Vc3S01_0261 SM00955 Vc3S01_0261 Vc3S01_0262 SM00967 RNA 2'-O ribose methyltransferase substrate binding Vc3S01_0272 SM01150 Vc3S01_0272 Vc3S01_0273 SM00100 Cyclic nucleotide-monophosphate binding domain Vc3S01_0273 SM00419 helix_turn_helix, cAMP Regulatory protein Vc3S01_0278 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0286 SM00320 WD40 repeats Vc3S01_0294 SM00838 Elongation factor G C-terminus Vc3S01_0294 SM00889 Elongation factor G, domain IV Vc3S01_0298 SM00919 Malic enzyme, NAD binding domain Vc3S01_0298 SM01274 Vc3S01_0298 Vc3S01_0306 SM00859 Semialdehyde dehydrogenase, NAD binding domain Vc3S01_0316 SM00842 Cell division protein FtsA Vc3S01_0320 SM00965 Secretin and TonB N terminus short domain Vc3S01_0331 SM01005 Alanine racemase, C-terminal domain Vc3S01_0351 SM00327 von Willebrand factor (vWF) type A domain Vc3S01_0353 SM00857 Resolvase, N terminal domain Vc3S01_0354 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0371 SM01018 B12 binding domain Vc3S01_0377 SM00421 helix_turn_helix, Lux Regulon Vc3S01_0379 SM00052 Putative diguanylate phosphodiesterase Vc3S01_0379 SM00267 diguanylate cyclase Vc3S01_0383 SM00965 Secretin and TonB N terminus short domain Vc3S01_0385 SM00028 Tetratricopeptide repeats Vc3S01_0386 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0400 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_0404 SM00670 Large family of predicted nucleotide-binding domains Vc3S01_0405 SM00487 DEAD-like helicases superfamily Vc3S01_0405 SM00490 helicase superfamily c-terminal domain Vc3S01_0411 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_0411 SM00924 MgtE intracellular N domain Vc3S01_0417 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0420 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_0422 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0429 SM00563 Phosphate acyltransferases Vc3S01_0438 SM00347 helix_turn_helix multiple antibiotic resistance protein Vc3S01_0446 SM00822 Vc3S01_0446 Vc3S01_0448 SM00495 Chitin-binding domain type 3 Vc3S01_0454 SM00354 helix_turn _helix lactose operon repressor Vc3S01_0455 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_0459 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_0459 SM01049 Vc3S01_0459 Vc3S01_0463 SM00478 endonuclease III Vc3S01_0463 SM00525 Vc3S01_0463 Vc3S01_0468 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_0471 SM01152 Vc3S01_0471 Vc3S01_0475 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0477 SM00732 Likely ribonuclease with RNase H fold. Vc3S01_0482 SM00731 SprT homologues. Vc3S01_0485 SM00861 Transketolase, pyrimidine binding domain Vc3S01_0486 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Vc3S01_0512 SM00838 Elongation factor G C-terminus Vc3S01_0514 SM00358 Double-stranded RNA binding motif Vc3S01_0514 SM00535 Ribonuclease III family Vc3S01_0519 SM00073 Histidine Phosphotransfer domain Vc3S01_0519 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_0519 SM00387 Histidine kinase-like ATPases Vc3S01_0519 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_0519 SM00448 cheY-homologous receiver domain Vc3S01_0521 SM00954 Region found in RelA / SpoT proteins Vc3S01_0524 SM01192 Vc3S01_0524 Vc3S01_0524 SM01193 Vc3S01_0524 Vc3S01_0531 SM00257 Lysin motif Vc3S01_0533 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Vc3S01_0533 SM00534 ATPase domain of DNA mismatch repair MUTS family Vc3S01_0535 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0537 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Vc3S01_0544 SM00829 Enoylreductase Vc3S01_0550 SM01091 Transporter associated domain Vc3S01_0552 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0552 SM00962 SRP54-type protein, GTPase domain Vc3S01_0552 SM00963 SRP54-type protein, helical bundle domain Vc3S01_0566 SM00644 Vc3S01_0566 Vc3S01_0567 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_0567 SM00895 Vc3S01_0567 Vc3S01_0573 SM00947 Carbonic anhydrase Vc3S01_0575 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0585 SM00487 DEAD-like helicases superfamily Vc3S01_0585 SM00490 helicase superfamily c-terminal domain Vc3S01_0585 SM00847 Helicase associated domain (HA2) Add an annotation Vc3S01_0590 SM00938 Nitrogen regulatory protein P-II Vc3S01_0594 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0596 SM01068 Putative carbohydrate binding domain Vc3S01_0600 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0601 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0605 SM00091 PAS domain Vc3S01_0605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_0605 SM00387 Histidine kinase-like ATPases Vc3S01_0605 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_0605 SM00448 cheY-homologous receiver domain Vc3S01_0615 SM00363 S4 RNA-binding domain Vc3S01_0622 SM01103 Vc3S01_0622 Vc3S01_0624 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0629 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_0633 SM01387 Vc3S01_0633 Vc3S01_0634 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_0634 SM00322 K homology RNA-binding domain Vc3S01_0635 SM00028 Tetratricopeptide repeats Vc3S01_0636 SM00347 helix_turn_helix multiple antibiotic resistance protein Vc3S01_0640 SM00052 Putative diguanylate phosphodiesterase Vc3S01_0640 SM00091 PAS domain Vc3S01_0640 SM00267 diguanylate cyclase Vc3S01_0646 SM00267 diguanylate cyclase Vc3S01_0651 SM01133 Vc3S01_0651 Vc3S01_0652 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Vc3S01_0658 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0659 SM00838 Elongation factor G C-terminus Vc3S01_0659 SM00889 Elongation factor G, domain IV Vc3S01_0666 SM00421 helix_turn_helix, Lux Regulon Vc3S01_0668 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_0672 SM00858 Vc3S01_0672 Vc3S01_0682 SM00028 Tetratricopeptide repeats Vc3S01_0690 SM01038 Beta galactosidase small chain Vc3S01_0691 SM00354 helix_turn _helix lactose operon repressor Vc3S01_0698 SM00354 helix_turn _helix lactose operon repressor Vc3S01_0709 SM00420 helix_turn_helix, Deoxyribose operon repressor Vc3S01_0709 SM01134 Vc3S01_0709 Vc3S01_0726 SM00257 Lysin motif Vc3S01_0731 SM00925 MltA specific insert domain Vc3S01_0738 SM00464 Found in ATP-dependent protease La (LON) Vc3S01_0749 SM00900 Vc3S01_0749 Vc3S01_0755 SM00267 diguanylate cyclase Vc3S01_0755 SM00448 cheY-homologous receiver domain Vc3S01_0757 SM00487 DEAD-like helicases superfamily Vc3S01_0757 SM00490 helicase superfamily c-terminal domain Vc3S01_0760 SM00495 Chitin-binding domain type 3 Vc3S01_0760 SM00636 Vc3S01_0760 Vc3S01_0778 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_0787 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Vc3S01_0789 SM00935 Outer membrane protein (OmpH-like) Vc3S01_0795 SM00481 DNA polymerase alpha chain like domain Vc3S01_0797 SM00977 TilS substrate C-terminal domain Vc3S01_0799 SM00938 Nitrogen regulatory protein P-II Vc3S01_0802 SM00257 Lysin motif Vc3S01_0803 SM00849 Metallo-beta-lactamase superfamily Vc3S01_0806 SM00479 Vc3S01_0806 Vc3S01_0822 SM00028 Tetratricopeptide repeats Vc3S01_0827 SM01130 Vc3S01_0827 Vc3S01_0838 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_0849 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0850 SM00387 Histidine kinase-like ATPases Vc3S01_0850 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_0851 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0851 SM00448 cheY-homologous receiver domain Vc3S01_0856 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0869 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0869 SM00962 SRP54-type protein, GTPase domain Vc3S01_0872 SM00448 cheY-homologous receiver domain Vc3S01_0874 SM00073 Histidine Phosphotransfer domain Vc3S01_0874 SM00260 Two component signalling adaptor domain Vc3S01_0874 SM00387 Histidine kinase-like ATPases Vc3S01_0874 SM01231 Vc3S01_0874 Vc3S01_0875 SM00448 cheY-homologous receiver domain Vc3S01_0877 SM00260 Two component signalling adaptor domain Vc3S01_0878 SM00260 Two component signalling adaptor domain Vc3S01_0880 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0898 SM00855 Phosphoglycerate mutase family Vc3S01_0899 SM00463 Small MutS-related domain Vc3S01_0909 SM00825 Beta-ketoacyl synthase Vc3S01_0912 SM00859 Semialdehyde dehydrogenase, NAD binding domain Vc3S01_0921 SM00448 cheY-homologous receiver domain Vc3S01_0925 SM00382 ATPases associated with a variety of cellular activities Vc3S01_0927 SM00493 Vc3S01_0927 Vc3S01_0942 SM00098 Alkaline phosphatase homologues Vc3S01_0950 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Vc3S01_0954 SM00870 Vc3S01_0954 Vc3S01_0958 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Vc3S01_0958 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Vc3S01_0958 SM00493 Vc3S01_0958 Vc3S01_0972 SM00859 Semialdehyde dehydrogenase, NAD binding domain Vc3S01_0985 SM00507 HNH nucleases Vc3S01_0996 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_0999 SM00148 Phospholipase C, catalytic domain (part); domain X Vc3S01_1030 SM00479 Vc3S01_1030 Vc3S01_1034 SM00478 endonuclease III Vc3S01_1034 SM00525 Vc3S01_1034 Vc3S01_1036 SM00900 Vc3S01_1036 Vc3S01_1042 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_1047 SM00487 DEAD-like helicases superfamily Vc3S01_1047 SM00490 helicase superfamily c-terminal domain Vc3S01_1048 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1048 SM00448 cheY-homologous receiver domain Vc3S01_1051 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_1052 SM00852 Probable molybdopterin binding domain Vc3S01_1059 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1060 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1068 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1069 SM00642 Alpha-amylase domain Vc3S01_1070 SM00267 diguanylate cyclase Vc3S01_1076 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_1083 SM00226 Low molecular weight phosphatase family Vc3S01_1085 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_1087 SM00363 S4 RNA-binding domain Vc3S01_1093 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Vc3S01_1094 SM00822 Vc3S01_1094 Vc3S01_1096 SM00825 Beta-ketoacyl synthase Vc3S01_1113 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_1117 SM00260 Two component signalling adaptor domain Vc3S01_1117 SM00448 cheY-homologous receiver domain Vc3S01_1118 SM00481 DNA polymerase alpha chain like domain Vc3S01_1121 SM00822 Vc3S01_1121 Vc3S01_1126 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_1127 SM00411 bacterial (prokaryotic) histone like domain Vc3S01_1129 SM00028 Tetratricopeptide repeats Vc3S01_1130 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Vc3S01_1153 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1156 SM00479 Vc3S01_1156 Vc3S01_1168 SM00220 Serine/Threonine protein kinases, catalytic domain Vc3S01_1168 SM00364 Leucine-rich repeats, bacterial type Vc3S01_1168 SM00369 Leucine-rich repeats, typical (most populated) subfamily Vc3S01_1169 SM00387 Histidine kinase-like ATPases Vc3S01_1169 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_1170 SM00448 cheY-homologous receiver domain Vc3S01_1170 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_1174 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_1174 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_1184 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_1185 SM00052 Putative diguanylate phosphodiesterase Vc3S01_1185 SM00091 PAS domain Vc3S01_1195 SM00387 Histidine kinase-like ATPases Vc3S01_1195 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_1195 SM00448 cheY-homologous receiver domain Vc3S01_1205 SM00481 DNA polymerase alpha chain like domain Vc3S01_1208 SM00363 S4 RNA-binding domain Vc3S01_1210 SM00841 Elongation factor P, C-terminal Vc3S01_1210 SM01185 Vc3S01_1210 Vc3S01_1212 SM00486 DNA polymerase type-B family Vc3S01_1213 SM00421 helix_turn_helix, Lux Regulon Vc3S01_1213 SM00448 cheY-homologous receiver domain Vc3S01_1215 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Vc3S01_1222 SM00852 Probable molybdopterin binding domain Vc3S01_1227 SM00434 DNA Topoisomerase IV Vc3S01_1245 SM00849 Metallo-beta-lactamase superfamily Vc3S01_1251 SM00387 Histidine kinase-like ATPases Vc3S01_1251 SM01049 Vc3S01_1251 Vc3S01_1252 SM00421 helix_turn_helix, Lux Regulon Vc3S01_1252 SM00448 cheY-homologous receiver domain Vc3S01_1253 SM00347 helix_turn_helix multiple antibiotic resistance protein Vc3S01_1255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_1255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_1257 SM00479 Vc3S01_1257 Vc3S01_1258 SM00100 Cyclic nucleotide-monophosphate binding domain Vc3S01_1258 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_1264 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_1268 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_1268 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_1270 SM00421 helix_turn_helix, Lux Regulon Vc3S01_1273 SM00052 Putative diguanylate phosphodiesterase Vc3S01_1278 SM00387 Histidine kinase-like ATPases Vc3S01_1278 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_1278 SM00448 cheY-homologous receiver domain Vc3S01_1284 SM00091 PAS domain Vc3S01_1284 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1289 SM00901 Vc3S01_1289 Vc3S01_1335 SM00954 Region found in RelA / SpoT proteins Vc3S01_1406 SM00100 Cyclic nucleotide-monophosphate binding domain Vc3S01_1406 SM00387 Histidine kinase-like ATPases Vc3S01_1407 SM00448 cheY-homologous receiver domain Vc3S01_1408 SM00052 Putative diguanylate phosphodiesterase Vc3S01_1408 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Vc3S01_1408 SM00267 diguanylate cyclase Vc3S01_1409 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_1415 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Vc3S01_1416 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_1424 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1425 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1435 SM00267 diguanylate cyclase Vc3S01_1435 SM01079 Vc3S01_1435 Vc3S01_1436 SM00479 Vc3S01_1436 Vc3S01_1440 SM00458 Ricin-type beta-trefoil Vc3S01_1445 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1447 SM00354 helix_turn _helix lactose operon repressor Vc3S01_1452 SM01217 Vc3S01_1452 Vc3S01_1453 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_1458 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1458 SM00487 DEAD-like helicases superfamily Vc3S01_1458 SM00490 helicase superfamily c-terminal domain Vc3S01_1458 SM00847 Helicase associated domain (HA2) Add an annotation Vc3S01_1462 SM00245 tail specific protease Vc3S01_1463 SM00028 Tetratricopeptide repeats Vc3S01_1479 SM00999 Aerolysin toxin Vc3S01_1484 SM00999 Aerolysin toxin Vc3S01_1485 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_1496 SM00100 Cyclic nucleotide-monophosphate binding domain Vc3S01_1496 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_1497 SM00479 Vc3S01_1497 Vc3S01_1546 SM00091 PAS domain Vc3S01_1546 SM00387 Histidine kinase-like ATPases Vc3S01_1547 SM00448 cheY-homologous receiver domain Vc3S01_1550 SM01350 Vc3S01_1550 Vc3S01_1555 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1564 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_1564 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_1565 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_1565 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_1566 SM00220 Serine/Threonine protein kinases, catalytic domain Vc3S01_1573 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1573 SM01086 C-terminal, D2-small domain, of ClpB protein Vc3S01_1586 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_1586 SM00895 Vc3S01_1586 Vc3S01_1596 SM00020 Trypsin-like serine protease Vc3S01_1596 SM00495 Chitin-binding domain type 3 Vc3S01_1601 SM00028 Tetratricopeptide repeats Vc3S01_1601 SM00267 diguanylate cyclase Vc3S01_1605 SM00112 Cadherin repeats. Vc3S01_1605 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Vc3S01_1605 SM00327 von Willebrand factor (vWF) type A domain Vc3S01_1605 SM00736 Dystroglycan-type cadherin-like domains. Vc3S01_1608 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Vc3S01_1609 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Vc3S01_1610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_1615 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1618 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_1628 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1630 SM00945 ProQ/FINO family Vc3S01_1631 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Vc3S01_1631 SM00245 tail specific protease Vc3S01_1637 SM00981 Vc3S01_1637 Vc3S01_1639 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1650 SM00387 Histidine kinase-like ATPases Vc3S01_1650 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_1650 SM00448 cheY-homologous receiver domain Vc3S01_1651 SM00897 FIST N domain Vc3S01_1651 SM01204 Vc3S01_1651 Vc3S01_1661 SM00100 Cyclic nucleotide-monophosphate binding domain Vc3S01_1661 SM00419 helix_turn_helix, cAMP Regulatory protein Vc3S01_1668 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1678 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_1688 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1691 SM00387 Histidine kinase-like ATPases Vc3S01_1691 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_1692 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1692 SM00448 cheY-homologous receiver domain Vc3S01_1695 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1697 SM00852 Probable molybdopterin binding domain Vc3S01_1700 SM01144 Vc3S01_1700 Vc3S01_1708 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_1711 SM00267 diguanylate cyclase Vc3S01_1712 SM00448 cheY-homologous receiver domain Vc3S01_1724 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1724 SM00448 cheY-homologous receiver domain Vc3S01_1736 SM01276 Vc3S01_1736 Vc3S01_1741 SM00267 diguanylate cyclase Vc3S01_1742 SM00387 Histidine kinase-like ATPases Vc3S01_1742 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_1742 SM00448 cheY-homologous receiver domain Vc3S01_1746 SM01266 Vc3S01_1746 Vc3S01_1748 SM01118 Vc3S01_1748 Vc3S01_1751 SM00347 helix_turn_helix multiple antibiotic resistance protein Vc3S01_1760 SM00872 Alpha mannosidase, middle domain Vc3S01_1771 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Vc3S01_1771 SM00495 Chitin-binding domain type 3 Vc3S01_1781 SM00257 Lysin motif Vc3S01_1784 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_1786 SM00495 Chitin-binding domain type 3 Vc3S01_1809 SM00267 diguanylate cyclase Vc3S01_1812 SM00635 Bacterial Ig-like domain 2 Vc3S01_1815 SM00448 cheY-homologous receiver domain Vc3S01_1817 SM00387 Histidine kinase-like ATPases Vc3S01_1817 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_1817 SM00448 cheY-homologous receiver domain Vc3S01_1837 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1841 SM00855 Phosphoglycerate mutase family Vc3S01_1845 SM00903 Flavin reductase like domain Vc3S01_1849 SM00479 Vc3S01_1849 Vc3S01_1857 SM00411 bacterial (prokaryotic) histone like domain Vc3S01_1871 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1872 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1874 SM00873 B3/4 domain Vc3S01_1874 SM00874 tRNA synthetase B5 domain Vc3S01_1874 SM00896 Ferredoxin-fold anticodon binding domain Vc3S01_1876 SM00267 diguanylate cyclase Vc3S01_1882 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_1891 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Vc3S01_1893 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_1893 SM00866 Vc3S01_1893 Vc3S01_1910 SM00671 Sel1-like repeats. Vc3S01_1918 SM00487 DEAD-like helicases superfamily Vc3S01_1918 SM00490 helicase superfamily c-terminal domain Vc3S01_1918 SM00847 Helicase associated domain (HA2) Add an annotation Vc3S01_1919 SM00919 Malic enzyme, NAD binding domain Vc3S01_1919 SM01274 Vc3S01_1919 Vc3S01_1922 SM00267 diguanylate cyclase Vc3S01_1927 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1928 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1932 SM00052 Putative diguanylate phosphodiesterase Vc3S01_1933 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_1934 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_1935 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_1938 SM00267 diguanylate cyclase Vc3S01_1943 SM00387 Histidine kinase-like ATPases Vc3S01_1944 SM00448 cheY-homologous receiver domain Vc3S01_1961 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1968 SM00363 S4 RNA-binding domain Vc3S01_1969 SM00487 DEAD-like helicases superfamily Vc3S01_1969 SM00490 helicase superfamily c-terminal domain Vc3S01_1972 SM00267 diguanylate cyclase Vc3S01_1974 SM00448 cheY-homologous receiver domain Vc3S01_1974 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_1975 SM00387 Histidine kinase-like ATPases Vc3S01_1987 SM00421 helix_turn_helix, Lux Regulon Vc3S01_1987 SM00448 cheY-homologous receiver domain Vc3S01_1988 SM00387 Histidine kinase-like ATPases Vc3S01_1988 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_1989 SM00450 Rhodanese Homology Domain Vc3S01_1995 SM00382 ATPases associated with a variety of cellular activities Vc3S01_1997 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_2000 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Vc3S01_2000 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_2005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_2007 SM00155 Phospholipase D. Active site motifs. Vc3S01_2020 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2024 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2025 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2027 SM01131 Vc3S01_2027 Vc3S01_2042 SM00840 Vc3S01_2042 Vc3S01_2055 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2057 SM00528 Domain in histone-like proteins of HNS family Vc3S01_2076 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_2076 SM00876 Biotin and Thiamin Synthesis associated domain Vc3S01_2082 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2084 SM00843 Vc3S01_2084 Vc3S01_2085 SM00344 helix_turn_helix ASNC type Vc3S01_2086 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Vc3S01_2086 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Vc3S01_2097 SM00466 SET and RING finger associated domain. Domain of unknown function in SET domain containing proteins and in Deinococcus radiodurans DRA1533. Vc3S01_2097 SM00507 HNH nucleases Vc3S01_2103 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_2108 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_2108 SM00895 Vc3S01_2108 Vc3S01_2109 SM00347 helix_turn_helix multiple antibiotic resistance protein Vc3S01_2112 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_2113 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_2113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_2117 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2118 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2144 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2170 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_2178 SM00387 Histidine kinase-like ATPases Vc3S01_2178 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_2178 SM00448 cheY-homologous receiver domain Vc3S01_2185 SM00028 Tetratricopeptide repeats Vc3S01_2195 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2196 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Vc3S01_2197 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_2211 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_2217 SM00448 cheY-homologous receiver domain Vc3S01_2217 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_2219 SM00354 helix_turn _helix lactose operon repressor Vc3S01_2226 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Vc3S01_2226 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Vc3S01_2226 SM00493 Vc3S01_2226 Vc3S01_2232 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_2233 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2233 SM01086 C-terminal, D2-small domain, of ClpB protein Vc3S01_2235 SM00357 Cold shock protein domain Vc3S01_2240 SM00491 Vc3S01_2240 Vc3S01_2247 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_2247 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Vc3S01_2248 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2256 SM00763 PrkA AAA domain Vc3S01_2262 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2263 SM00849 Metallo-beta-lactamase superfamily Vc3S01_2266 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2269 SM00487 DEAD-like helicases superfamily Vc3S01_2269 SM00490 helicase superfamily c-terminal domain Vc3S01_2269 SM00982 Vc3S01_2269 Vc3S01_2269 SM01058 CarD-like/TRCF domain Vc3S01_2279 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_2279 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_2284 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_2288 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_2288 SM00267 diguanylate cyclase Vc3S01_2293 SM00344 helix_turn_helix ASNC type Vc3S01_2301 SM00978 Vc3S01_2301 Vc3S01_2303 SM00563 Phosphate acyltransferases Vc3S01_2309 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Vc3S01_2315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_2316 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_2317 SM01144 Vc3S01_2317 Vc3S01_2319 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Vc3S01_2321 SM00411 bacterial (prokaryotic) histone like domain Vc3S01_2322 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2322 SM00464 Found in ATP-dependent protease La (LON) Vc3S01_2323 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2323 SM00994 ClpX C4-type zinc finger Vc3S01_2323 SM01086 C-terminal, D2-small domain, of ClpB protein Vc3S01_2326 SM00387 Histidine kinase-like ATPases Vc3S01_2326 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_2327 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2327 SM00448 cheY-homologous receiver domain Vc3S01_2337 SM00487 DEAD-like helicases superfamily Vc3S01_2337 SM00490 helicase superfamily c-terminal domain Vc3S01_2338 SM01091 Transporter associated domain Vc3S01_2342 SM00823 Phosphopantetheine attachment site Vc3S01_2357 SM00487 DEAD-like helicases superfamily Vc3S01_2357 SM00490 helicase superfamily c-terminal domain Vc3S01_2372 SM00474 3'-5' exonuclease Vc3S01_2378 SM00487 DEAD-like helicases superfamily Vc3S01_2378 SM00491 Vc3S01_2378 Vc3S01_2381 SM00020 Trypsin-like serine protease Vc3S01_2384 SM00836 DALR anticodon binding domain Vc3S01_2384 SM01016 Arginyl tRNA synthetase N terminal dom Vc3S01_2389 SM00899 Vc3S01_2389 Vc3S01_2390 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_2392 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2394 SM00881 CoA binding domain Vc3S01_2397 SM00861 Transketolase, pyrimidine binding domain Vc3S01_2419 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Vc3S01_2423 SM00387 Histidine kinase-like ATPases Vc3S01_2424 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_2430 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_2431 SM00938 Nitrogen regulatory protein P-II Vc3S01_2438 SM00028 Tetratricopeptide repeats Vc3S01_2447 SM00244 prohibitin homologues Vc3S01_2452 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Vc3S01_2452 SM00292 breast cancer carboxy-terminal domain Vc3S01_2452 SM00532 Ligase N family Vc3S01_2453 SM00771 ZipA, C-terminal domain (FtsZ-binding) Vc3S01_2465 SM00047 Lysozyme subfamily 2 Vc3S01_2475 SM00138 Methyltransferase, chemotaxis proteins Vc3S01_2476 SM00260 Two component signalling adaptor domain Vc3S01_2476 SM00448 cheY-homologous receiver domain Vc3S01_2477 SM00858 Vc3S01_2477 Vc3S01_2492 SM01081 Putative carbohydrate binding domain Vc3S01_2496 SM00463 Small MutS-related domain Vc3S01_2497 SM00363 S4 RNA-binding domain Vc3S01_2504 SM00937 Vc3S01_2504 Vc3S01_2508 SM01400 Vc3S01_2508 Vc3S01_2513 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_2516 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_2516 SM01091 Transporter associated domain Vc3S01_2527 SM00936 Penicillin-binding protein 5, C-terminal domain Vc3S01_2530 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_2533 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_2535 SM00642 Alpha-amylase domain Vc3S01_2537 SM00354 helix_turn _helix lactose operon repressor Vc3S01_2539 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2539 SM00930 Vc3S01_2539 Vc3S01_2547 SM00028 Tetratricopeptide repeats Vc3S01_2548 SM00267 diguanylate cyclase Vc3S01_2550 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Vc3S01_2550 SM00475 5'-3' exonuclease Vc3S01_2551 SM00477 DNA/RNA non-specific endonuclease Vc3S01_2551 SM00892 DNA/RNA non-specific endonuclease Vc3S01_2556 SM00981 Vc3S01_2556 Vc3S01_2561 SM00861 Transketolase, pyrimidine binding domain Vc3S01_2571 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Vc3S01_2582 SM01211 Vc3S01_2582 Vc3S01_2583 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_2592 SM00271 DnaJ molecular chaperone homology domain Vc3S01_2613 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_2618 SM00495 Chitin-binding domain type 3 Vc3S01_2621 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_2621 SM01240 Vc3S01_2621 Vc3S01_2624 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Vc3S01_2624 SM00267 diguanylate cyclase Vc3S01_2626 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2627 SM00564 beta-propeller repeat Vc3S01_2631 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_2633 SM00562 Vc3S01_2633 Vc3S01_2638 SM00271 DnaJ molecular chaperone homology domain Vc3S01_2647 SM01323 Vc3S01_2647 Vc3S01_2650 SM00020 Trypsin-like serine protease Vc3S01_2653 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_2664 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2670 SM00091 PAS domain Vc3S01_2670 SM00387 Histidine kinase-like ATPases Vc3S01_2670 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_2671 SM00448 cheY-homologous receiver domain Vc3S01_2671 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_2681 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2681 SM01086 C-terminal, D2-small domain, of ClpB protein Vc3S01_2683 SM00363 S4 RNA-binding domain Vc3S01_2685 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_2687 SM00830 Chorismate mutase type II Vc3S01_2691 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2694 SM00830 Chorismate mutase type II Vc3S01_2704 SM00448 cheY-homologous receiver domain Vc3S01_2704 SM00850 LytTr DNA-binding domain Vc3S01_2709 SM00904 Riboflavin kinase Vc3S01_2712 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Vc3S01_2720 SM00927 DNA mismatch repair enzyme MutH Vc3S01_2724 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2726 SM00937 Vc3S01_2726 Vc3S01_2733 SM00487 DEAD-like helicases superfamily Vc3S01_2733 SM00490 helicase superfamily c-terminal domain Vc3S01_2739 SM00986 Uracil DNA glycosylase superfamily Vc3S01_2739 SM00987 UreE urease accessory protein, C-terminal domain Vc3S01_2740 SM00518 AP endonuclease family 2 Vc3S01_2749 SM00448 cheY-homologous receiver domain Vc3S01_2749 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_2751 SM00073 Histidine Phosphotransfer domain Vc3S01_2751 SM00091 PAS domain Vc3S01_2751 SM00387 Histidine kinase-like ATPases Vc3S01_2751 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_2751 SM00448 cheY-homologous receiver domain Vc3S01_2752 SM00091 PAS domain Vc3S01_2752 SM00267 diguanylate cyclase Vc3S01_2753 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_2766 SM00851 MGS-like domain Vc3S01_2766 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Vc3S01_2767 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Vc3S01_2770 SM00957 SecA DEAD-like domain Vc3S01_2770 SM00958 SecA preprotein cross-linking domain Vc3S01_2773 SM00864 Tubulin/FtsZ family, GTPase domain Vc3S01_2773 SM00865 Tubulin/FtsZ family, C-terminal domain Vc3S01_2774 SM00842 Cell division protein FtsA Vc3S01_2790 SM00749 bacterial OsmY and nodulation domain Vc3S01_2800 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Vc3S01_2801 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Vc3S01_2802 SM00434 DNA Topoisomerase IV Vc3S01_2803 SM00387 Histidine kinase-like ATPases Vc3S01_2803 SM00433 TopoisomeraseII Vc3S01_2811 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_2813 SM00880 Vc3S01_2813 Vc3S01_2813 SM01118 Vc3S01_2813 Vc3S01_2816 SM00287 Bacterial SH3 domain homologues Vc3S01_2819 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2823 SM00905 Dihydroneopterin aldolase Vc3S01_2824 SM01207 Vc3S01_2824 Vc3S01_2829 SM00400 zinc finger Vc3S01_2829 SM00493 Vc3S01_2829 Vc3S01_2829 SM00766 DNA primase DnaG DnaB-binding Vc3S01_2835 SM00563 Phosphate acyltransferases Vc3S01_2840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_2840 SM00387 Histidine kinase-like ATPases Vc3S01_2840 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_2841 SM00448 cheY-homologous receiver domain Vc3S01_2841 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_2845 SM00420 helix_turn_helix, Deoxyribose operon repressor Vc3S01_2845 SM01134 Vc3S01_2845 Vc3S01_2847 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_2847 SM00895 Vc3S01_2847 Vc3S01_2848 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Vc3S01_2848 SM00267 diguanylate cyclase Vc3S01_2854 SM00014 Acid phosphatase homologues Vc3S01_2857 SM00917 LeuA allosteric (dimerisation) domain Vc3S01_2858 SM01329 Vc3S01_2858 Vc3S01_2862 SM00271 DnaJ molecular chaperone homology domain Vc3S01_2866 SM00650 Ribosomal RNA adenine dimethylases Vc3S01_2882 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2899 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2910 SM00487 DEAD-like helicases superfamily Vc3S01_2910 SM00490 helicase superfamily c-terminal domain Vc3S01_2917 SM00662 RNA polymerases D Vc3S01_2918 SM00363 S4 RNA-binding domain Vc3S01_2918 SM01390 Vc3S01_2918 Vc3S01_2931 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Vc3S01_2932 SM01374 Vc3S01_2932 Vc3S01_2936 SM00322 K homology RNA-binding domain Vc3S01_2939 SM01382 Vc3S01_2939 Vc3S01_2939 SM01383 Vc3S01_2939 Vc3S01_2943 SM01403 Vc3S01_2943 Vc3S01_2945 SM00487 DEAD-like helicases superfamily Vc3S01_2945 SM00490 helicase superfamily c-terminal domain Vc3S01_2946 SM00354 helix_turn _helix lactose operon repressor Vc3S01_2949 SM00382 ATPases associated with a variety of cellular activities Vc3S01_2949 SM01086 C-terminal, D2-small domain, of ClpB protein Vc3S01_2960 SM00984 UDP binding domain Vc3S01_2972 SM00849 Metallo-beta-lactamase superfamily Vc3S01_2972 SM01027 Beta-Casp domain Vc3S01_3004 SM00672 Putative lipopolysaccharide-modifying enzyme. Vc3S01_3006 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Vc3S01_3006 SM01232 Vc3S01_3006 Vc3S01_3011 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_3011 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_3011 SM01049 Vc3S01_3011 Vc3S01_3021 SM00382 ATPases associated with a variety of cellular activities Vc3S01_3022 SM00382 ATPases associated with a variety of cellular activities Vc3S01_3032 SM00028 Tetratricopeptide repeats Vc3S01_3033 SM00072 Guanylate kinase homologues. Vc3S01_3034 SM01409 Vc3S01_3034 Vc3S01_3035 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_3035 SM00954 Region found in RelA / SpoT proteins Vc3S01_3037 SM00487 DEAD-like helicases superfamily Vc3S01_3037 SM00490 helicase superfamily c-terminal domain Vc3S01_3040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_3040 SM00387 Histidine kinase-like ATPases Vc3S01_3040 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_3041 SM00448 cheY-homologous receiver domain Vc3S01_3041 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_3044 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_3044 SM00732 Likely ribonuclease with RNase H fold. Vc3S01_3060 SM00382 ATPases associated with a variety of cellular activities Vc3S01_3074 SM01230 Vc3S01_3074 Vc3S01_3076 SM00091 PAS domain Vc3S01_3076 SM00387 Histidine kinase-like ATPases Vc3S01_3076 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_3077 SM00382 ATPases associated with a variety of cellular activities Vc3S01_3077 SM00448 cheY-homologous receiver domain Vc3S01_3078 SM00052 Putative diguanylate phosphodiesterase Vc3S01_3078 SM00267 diguanylate cyclase Vc3S01_3078 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_3080 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_3087 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Vc3S01_3087 SM00474 3'-5' exonuclease Vc3S01_3087 SM00475 5'-3' exonuclease Vc3S01_3087 SM00482 DNA polymerase A domain Vc3S01_3089 SM01004 Delta-aminolevulinic acid dehydratase Vc3S01_3102 SM00052 Putative diguanylate phosphodiesterase Vc3S01_3102 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Vc3S01_3102 SM00091 PAS domain Vc3S01_3102 SM00267 diguanylate cyclase Vc3S01_3114 SM00052 Putative diguanylate phosphodiesterase Vc3S01_3114 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Vc3S01_3114 SM00091 PAS domain Vc3S01_3114 SM00267 diguanylate cyclase Vc3S01_3115 SM00344 helix_turn_helix ASNC type Vc3S01_3129 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_3141 SM00354 helix_turn _helix lactose operon repressor Vc3S01_3142 SM00220 Serine/Threonine protein kinases, catalytic domain Vc3S01_3151 SM00382 ATPases associated with a variety of cellular activities Vc3S01_3168 SM01001 AIR carboxylase Vc3S01_3173 SM00257 Lysin motif Vc3S01_3189 SM00563 Phosphate acyltransferases Vc3S01_3191 SM00267 diguanylate cyclase Vc3S01_3192 SM00382 ATPases associated with a variety of cellular activities Vc3S01_3198 SM00267 diguanylate cyclase Vc3S01_3201 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_3205 SM00382 ATPases associated with a variety of cellular activities Vc3S01_3213 SM00470 ParB-like nuclease domain Vc3S01_3216 SM01228 Vc3S01_3216 Vc3S01_A0005 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0006 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0010 SM00387 Histidine kinase-like ATPases Vc3S01_A0010 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0010 SM00448 cheY-homologous receiver domain Vc3S01_A0019 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0023 SM00387 Histidine kinase-like ATPases Vc3S01_A0024 SM00448 cheY-homologous receiver domain Vc3S01_A0024 SM00850 LytTr DNA-binding domain Vc3S01_A0027 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A0027 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0027 SM01049 Vc3S01_A0027 Vc3S01_A0038 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0039 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_A0043 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0046 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0051 SM00988 UreE urease accessory protein, N-terminal domain Vc3S01_A0055 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0056 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0065 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0068 SM01057 Eukaryotic-type carbonic anhydrase Vc3S01_A0077 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0077 SM01009 AlkA N-terminal domain Vc3S01_A0087 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Vc3S01_A0087 SM00495 Chitin-binding domain type 3 Vc3S01_A0087 SM00636 Vc3S01_A0087 Vc3S01_A0091 SM00267 diguanylate cyclase Vc3S01_A0094 SM00354 helix_turn _helix lactose operon repressor Vc3S01_A0099 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0100 SM00354 helix_turn _helix lactose operon repressor Vc3S01_A0107 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0108 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0110 SM00354 helix_turn _helix lactose operon repressor Vc3S01_A0114 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0115 SM01217 Vc3S01_A0115 Vc3S01_A0120 SM00267 diguanylate cyclase Vc3S01_A0125 SM00829 Enoylreductase Vc3S01_A0136 SM00344 helix_turn_helix ASNC type Vc3S01_A0137 SM00495 Chitin-binding domain type 3 Vc3S01_A0173 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_A0177 SM00347 helix_turn_helix multiple antibiotic resistance protein Vc3S01_A0185 SM00822 Vc3S01_A0185 Vc3S01_A0189 SM00014 Acid phosphatase homologues Vc3S01_A0195 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0208 SM00448 cheY-homologous receiver domain Vc3S01_A0208 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A0209 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0209 SM00387 Histidine kinase-like ATPases Vc3S01_A0209 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0224 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0232 SM00849 Metallo-beta-lactamase superfamily Vc3S01_A0238 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0243 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Vc3S01_A0243 SM00091 PAS domain Vc3S01_A0243 SM00387 Histidine kinase-like ATPases Vc3S01_A0244 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0244 SM00448 cheY-homologous receiver domain Vc3S01_A0262 SM00267 diguanylate cyclase Vc3S01_A0262 SM01079 Vc3S01_A0262 Vc3S01_A0266 SM00267 diguanylate cyclase Vc3S01_A0272 SM01266 Vc3S01_A0272 Vc3S01_A0292 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0294 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_A0294 SM00866 Vc3S01_A0294 Vc3S01_A0300 SM00631 Vc3S01_A0300 Vc3S01_A0316 SM00858 Vc3S01_A0316 Vc3S01_A0339 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_A0345 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0368 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0373 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0375 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0376 SM00020 Trypsin-like serine protease Vc3S01_A0388 SM00481 DNA polymerase alpha chain like domain Vc3S01_A0391 SM00849 Metallo-beta-lactamase superfamily Vc3S01_A0398 SM00448 cheY-homologous receiver domain Vc3S01_A0398 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A0399 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0401 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_A0402 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0402 SM00267 diguanylate cyclase Vc3S01_A0404 SM00829 Enoylreductase Vc3S01_A0406 SM01119 Vc3S01_A0406 Vc3S01_A0410 SM00267 diguanylate cyclase Vc3S01_A0412 SM00829 Enoylreductase Vc3S01_A0413 SM01057 Eukaryotic-type carbonic anhydrase Vc3S01_A0420 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0423 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A0423 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0427 SM00587 ZnF_C4 abd HLH domain containing kinases domain Vc3S01_A0433 SM00226 Low molecular weight phosphatase family Vc3S01_A0433 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Vc3S01_A0436 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0441 SM00267 diguanylate cyclase Vc3S01_A0442 SM00028 Tetratricopeptide repeats Vc3S01_A0446 SM00422 helix_turn_helix, mercury resistance Vc3S01_A0448 SM00257 Lysin motif Vc3S01_A0450 SM00487 DEAD-like helicases superfamily Vc3S01_A0450 SM00490 helicase superfamily c-terminal domain Vc3S01_A0458 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A0458 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0462 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0463 SM00267 diguanylate cyclase Vc3S01_A0465 SM00327 von Willebrand factor (vWF) type A domain Vc3S01_A0466 SM00327 von Willebrand factor (vWF) type A domain Vc3S01_A0472 SM00419 helix_turn_helix, cAMP Regulatory protein Vc3S01_A0473 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A0473 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0475 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A0476 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A0478 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0481 SM01266 Vc3S01_A0481 Vc3S01_A0482 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Vc3S01_A0482 SM00448 cheY-homologous receiver domain Vc3S01_A0483 SM00387 Histidine kinase-like ATPases Vc3S01_A0483 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0493 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0495 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0497 SM00495 Chitin-binding domain type 3 Vc3S01_A0501 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Vc3S01_A0501 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0502 SM00849 Metallo-beta-lactamase superfamily Vc3S01_A0510 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0517 SM01060 Vc3S01_A0517 Vc3S01_A0519 SM00829 Enoylreductase Vc3S01_A0521 SM01022 Vc3S01_A0521 Vc3S01_A0533 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0535 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0542 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0558 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0564 SM00729 Elongator protein 3, MiaB family, Radical SAM Vc3S01_A0569 SM00260 Two component signalling adaptor domain Vc3S01_A0569 SM00448 cheY-homologous receiver domain Vc3S01_A0572 SM00642 Alpha-amylase domain Vc3S01_A0578 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Vc3S01_A0592 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0598 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0598 SM00387 Histidine kinase-like ATPases Vc3S01_A0598 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0599 SM00448 cheY-homologous receiver domain Vc3S01_A0599 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A0602 SM00764 Citrate lyase ligase C-terminal domain Vc3S01_A0604 SM01065 Starch binding domain Vc3S01_A0612 SM00563 Phosphate acyltransferases Vc3S01_A0614 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_A0615 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_A0640 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0643 SM00448 cheY-homologous receiver domain Vc3S01_A0643 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A0644 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0644 SM00387 Histidine kinase-like ATPases Vc3S01_A0644 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0646 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_A0648 SM00344 helix_turn_helix ASNC type Vc3S01_A0654 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Vc3S01_A0656 SM00387 Histidine kinase-like ATPases Vc3S01_A0656 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0656 SM00448 cheY-homologous receiver domain Vc3S01_A0716 SM00465 GIY-YIG type nucleases (URI domain) Vc3S01_A0718 SM00387 Histidine kinase-like ATPases Vc3S01_A0718 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0718 SM00448 cheY-homologous receiver domain Vc3S01_A0721 SM00344 helix_turn_helix ASNC type Vc3S01_A0730 SM00822 Vc3S01_A0730 Vc3S01_A0737 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_A0740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0740 SM00387 Histidine kinase-like ATPases Vc3S01_A0741 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A0741 SM00448 cheY-homologous receiver domain Vc3S01_A0749 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A0749 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0749 SM01358 Vc3S01_A0749 Vc3S01_A0757 SM01322 Vc3S01_A0757 Vc3S01_A0758 SM00357 Cold shock protein domain Vc3S01_A0761 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_A0761 SM00267 diguanylate cyclase Vc3S01_A0765 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0767 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A0767 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0795 SM00833 Cobalamin synthesis protein cobW C-terminal domain Vc3S01_A0796 SM00267 diguanylate cyclase Vc3S01_A0797 SM00487 DEAD-like helicases superfamily Vc3S01_A0797 SM00490 helicase superfamily c-terminal domain Vc3S01_A0801 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0802 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0811 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A0812 SM00316 Ribosomal protein S1-like RNA-binding domain Vc3S01_A0812 SM00357 Cold shock protein domain Vc3S01_A0812 SM00955 Vc3S01_A0812 Vc3S01_A0813 SM00487 DEAD-like helicases superfamily Vc3S01_A0813 SM00490 helicase superfamily c-terminal domain Vc3S01_A0814 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0814 SM00267 diguanylate cyclase Vc3S01_A0816 SM00857 Resolvase, N terminal domain Vc3S01_A0830 SM00354 helix_turn _helix lactose operon repressor Vc3S01_A0831 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0838 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A0838 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A0868 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A0874 SM00422 helix_turn_helix, mercury resistance Vc3S01_A0882 SM00822 Vc3S01_A0882 Vc3S01_A0897 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins Vc3S01_A0905 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0906 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_A0906 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Vc3S01_A0914 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0916 SM00893 Electron transfer flavoprotein domain Vc3S01_A0917 SM00893 Electron transfer flavoprotein domain Vc3S01_A0919 SM00861 Transketolase, pyrimidine binding domain Vc3S01_A0932 SM00448 cheY-homologous receiver domain Vc3S01_A0932 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A0933 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A0934 SM00871 Bacterial transcription activator, effector binding domain Vc3S01_A0935 SM00098 Alkaline phosphatase homologues Vc3S01_A0939 SM00028 Tetratricopeptide repeats Vc3S01_A0939 SM00267 diguanylate cyclase Vc3S01_A0942 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A0949 SM01012 Vc3S01_A0949 Vc3S01_A0952 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0960 SM00331 Sigma factor PP2C-like phosphatases Vc3S01_A0960 SM00448 cheY-homologous receiver domain Vc3S01_A0967 SM00636 Vc3S01_A0967 Vc3S01_A0969 SM00867 YceI-like domain Vc3S01_A0971 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Vc3S01_A0973 SM00267 diguanylate cyclase Vc3S01_A0973 SM01079 Vc3S01_A0973 Vc3S01_A0974 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A0981 SM00028 Tetratricopeptide repeats Vc3S01_A0997 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A0999 SM00020 Trypsin-like serine protease Vc3S01_A1014 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1025 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_A1036 SM00354 helix_turn _helix lactose operon repressor Vc3S01_A1039 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1041 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_A1041 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Vc3S01_A1043 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1046 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1047 SM00495 Chitin-binding domain type 3 Vc3S01_A1047 SM00636 Vc3S01_A1047 Vc3S01_A1053 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Vc3S01_A1055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A1058 SM00487 DEAD-like helicases superfamily Vc3S01_A1058 SM00490 helicase superfamily c-terminal domain Vc3S01_A1059 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1063 SM00867 YceI-like domain Vc3S01_A1064 SM00116 Domain in cystathionine beta-synthase and other proteins. Vc3S01_A1072 SM00782 PhnA Zinc-Ribbon Vc3S01_A1085 SM00271 DnaJ molecular chaperone homology domain Vc3S01_A1087 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1087 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Vc3S01_A1087 SM00267 diguanylate cyclase Vc3S01_A1090 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1093 SM00797 Allophanate hydrolase subunit 2 Vc3S01_A1094 SM00796 Allophanate hydrolase subunit 1 Vc3S01_A1096 SM00091 PAS domain Vc3S01_A1096 SM00267 diguanylate cyclase Vc3S01_A1096 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1101 SM00881 CoA binding domain Vc3S01_A1115 SM00448 cheY-homologous receiver domain Vc3S01_A1115 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A1116 SM00387 Histidine kinase-like ATPases Vc3S01_A1116 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A1118 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Vc3S01_A1118 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Vc3S01_A1121 SM00267 diguanylate cyclase Vc3S01_A1122 SM00267 diguanylate cyclase Vc3S01_A1122 SM00448 cheY-homologous receiver domain Vc3S01_A1124 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1132 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1139 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Vc3S01_A1140 SM00450 Rhodanese Homology Domain Vc3S01_A1145 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1147 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A1147 SM00448 cheY-homologous receiver domain Vc3S01_A1148 SM00387 Histidine kinase-like ATPases Vc3S01_A1155 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1164 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1169 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A1169 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1169 SM01049 Vc3S01_A1169 Vc3S01_A1178 SM00267 diguanylate cyclase Vc3S01_A1182 SM00880 Vc3S01_A1182 Vc3S01_A1185 SM00642 Alpha-amylase domain Vc3S01_A1193 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1201 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1208 SM00495 Chitin-binding domain type 3 Vc3S01_A1208 SM00636 Vc3S01_A1208 Vc3S01_A1218 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1218 SM01086 C-terminal, D2-small domain, of ClpB protein Vc3S01_A1227 SM00331 Sigma factor PP2C-like phosphatases Vc3S01_A1227 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Vc3S01_A1233 SM00240 Forkhead associated domain Vc3S01_A1234 SM00220 Serine/Threonine protein kinases, catalytic domain Vc3S01_A1235 SM00448 cheY-homologous receiver domain Vc3S01_A1244 SM00953 Vc3S01_A1244 Vc3S01_A1246 SM00704 CDGSH-type zinc finger. Function unknown. Vc3S01_A1248 SM00849 Metallo-beta-lactamase superfamily Vc3S01_A1251 SM00710 Parallel beta-helix repeats Vc3S01_A1261 SM00014 Acid phosphatase homologues Vc3S01_A1267 SM00260 Two component signalling adaptor domain Vc3S01_A1267 SM00448 cheY-homologous receiver domain Vc3S01_A1269 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A1269 SM00448 cheY-homologous receiver domain Vc3S01_A1271 SM00267 diguanylate cyclase Vc3S01_A1272 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A1272 SM00448 cheY-homologous receiver domain Vc3S01_A1273 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1273 SM00448 cheY-homologous receiver domain Vc3S01_A1274 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_A1274 SM00387 Histidine kinase-like ATPases Vc3S01_A1274 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A1274 SM00448 cheY-homologous receiver domain Vc3S01_A1275 SM00267 diguanylate cyclase Vc3S01_A1275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1287 SM00240 Forkhead associated domain Vc3S01_A1291 SM00344 helix_turn_helix ASNC type Vc3S01_A1298 SM00220 Serine/Threonine protein kinases, catalytic domain Vc3S01_A1305 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1305 SM01086 C-terminal, D2-small domain, of ClpB protein Vc3S01_A1306 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1311 SM00564 beta-propeller repeat Vc3S01_A1315 SM00387 Histidine kinase-like ATPases Vc3S01_A1315 SM00448 cheY-homologous receiver domain Vc3S01_A1324 SM00990 Vc3S01_A1324 Vc3S01_A1325 SM00028 Tetratricopeptide repeats Vc3S01_A1331 SM00046 Diacylglycerol kinase catalytic domain (presumed) Vc3S01_A1335 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1345 SM00327 von Willebrand factor (vWF) type A domain Vc3S01_A1349 SM00028 Tetratricopeptide repeats Vc3S01_A1352 SM00448 cheY-homologous receiver domain Vc3S01_A1352 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A1353 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1353 SM00387 Histidine kinase-like ATPases Vc3S01_A1353 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A1357 SM00073 Histidine Phosphotransfer domain Vc3S01_A1357 SM00387 Histidine kinase-like ATPases Vc3S01_A1357 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A1357 SM00448 cheY-homologous receiver domain Vc3S01_A1359 SM00851 MGS-like domain Vc3S01_A1367 SM00422 helix_turn_helix, mercury resistance Vc3S01_A1368 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1377 SM00354 helix_turn _helix lactose operon repressor Vc3S01_A1381 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1383 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1383 SM00267 diguanylate cyclase Vc3S01_A1401 SM00387 Histidine kinase-like ATPases Vc3S01_A1401 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A1401 SM00448 cheY-homologous receiver domain Vc3S01_A1403 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_A1403 SM00073 Histidine Phosphotransfer domain Vc3S01_A1403 SM00387 Histidine kinase-like ATPases Vc3S01_A1403 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A1403 SM00448 cheY-homologous receiver domain Vc3S01_A1404 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1404 SM00448 cheY-homologous receiver domain Vc3S01_A1405 SM00448 cheY-homologous receiver domain Vc3S01_A1408 SM00244 prohibitin homologues Vc3S01_A1410 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1416 SM00267 diguanylate cyclase Vc3S01_A1422 SM00458 Ricin-type beta-trefoil Vc3S01_A1431 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1442 SM01240 Vc3S01_A1442 Vc3S01_A1445 SM00448 cheY-homologous receiver domain Vc3S01_A1455 SM00852 Probable molybdopterin binding domain Vc3S01_A1467 SM00450 Rhodanese Homology Domain Vc3S01_A1468 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1468 SM00267 diguanylate cyclase Vc3S01_A1469 SM00636 Vc3S01_A1469 Vc3S01_A1472 SM00861 Transketolase, pyrimidine binding domain Vc3S01_A1474 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A1490 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1502 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1502 SM00267 diguanylate cyclase Vc3S01_A1508 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A1508 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1512 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_A1514 SM00481 DNA polymerase alpha chain like domain Vc3S01_A1525 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Vc3S01_A1528 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1538 SM01119 Vc3S01_A1538 Vc3S01_A1540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A1540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1542 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1547 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Vc3S01_A1559 SM00422 helix_turn_helix, mercury resistance Vc3S01_A1563 SM01235 Vc3S01_A1563 Vc3S01_A1573 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1574 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1577 SM00420 helix_turn_helix, Deoxyribose operon repressor Vc3S01_A1577 SM01134 Vc3S01_A1577 Vc3S01_A1582 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1587 SM00347 helix_turn_helix multiple antibiotic resistance protein Vc3S01_A1596 SM00357 Cold shock protein domain Vc3S01_A1601 SM00267 diguanylate cyclase Vc3S01_A1601 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1608 SM00936 Penicillin-binding protein 5, C-terminal domain Vc3S01_A1623 SM00822 Vc3S01_A1623 Vc3S01_A1632 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1632 SM00871 Bacterial transcription activator, effector binding domain Vc3S01_A1642 SM00487 DEAD-like helicases superfamily Vc3S01_A1642 SM00490 helicase superfamily c-terminal domain Vc3S01_A1643 SM00849 Metallo-beta-lactamase superfamily Vc3S01_A1652 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1659 SM00788 Adenylosuccinate synthetase Vc3S01_A1661 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A1662 SM00870 Vc3S01_A1662 Vc3S01_A1666 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A1668 SM00886 Stress responsive A/B Barrel Domain Vc3S01_A1670 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1682 SM00267 diguanylate cyclase Vc3S01_A1683 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_A1684 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A1690 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A1715 SM00155 Phospholipase D. Active site motifs. Vc3S01_A1718 SM01022 Vc3S01_A1718 Vc3S01_A1719 SM00028 Tetratricopeptide repeats Vc3S01_A1720 SM00422 helix_turn_helix, mercury resistance Vc3S01_A1723 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Vc3S01_A1724 SM00838 Elongation factor G C-terminus Vc3S01_A1724 SM00889 Elongation factor G, domain IV Vc3S01_A1732 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1739 SM00062 Bacterial periplasmic substrate-binding proteins Vc3S01_A1748 SM00248 ankyrin repeats Vc3S01_A1749 SM01060 Vc3S01_A1749 Vc3S01_A1754 SM00420 helix_turn_helix, Deoxyribose operon repressor Vc3S01_A1754 SM01134 Vc3S01_A1754 Vc3S01_A1771 SM00450 Rhodanese Homology Domain Vc3S01_A1777 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1794 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Vc3S01_A1794 SM00091 PAS domain Vc3S01_A1794 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1794 SM00387 Histidine kinase-like ATPases Vc3S01_A1794 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A1794 SM00448 cheY-homologous receiver domain Vc3S01_A1804 SM00387 Histidine kinase-like ATPases Vc3S01_A1804 SM00388 His Kinase A (phosphoacceptor) domain Vc3S01_A1805 SM00448 cheY-homologous receiver domain Vc3S01_A1805 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_A1828 SM00936 Penicillin-binding protein 5, C-terminal domain Vc3S01_A1832 SM00450 Rhodanese Homology Domain Vc3S01_A1835 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Vc3S01_A1844 SM00226 Low molecular weight phosphatase family Vc3S01_A1859 SM00642 Alpha-amylase domain Vc3S01_A1861 SM00642 Alpha-amylase domain Vc3S01_A1864 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A1887 SM00882 Coenzyme A transferase Vc3S01_A1888 SM00882 Coenzyme A transferase Vc3S01_A1891 SM00966 SpoVT / AbrB like domain Vc3S01_A1895 SM00671 Sel1-like repeats. Vc3S01_A1896 SM00642 Alpha-amylase domain Vc3S01_A1898 SM00642 Alpha-amylase domain Vc3S01_A1903 SM00642 Alpha-amylase domain Vc3S01_A1904 SM00267 diguanylate cyclase Vc3S01_A1917 SM00354 helix_turn _helix lactose operon repressor Vc3S01_A1918 SM00857 Resolvase, N terminal domain Vc3S01_A1931 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Vc3S01_A1932 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_A1932 SM00866 Vc3S01_A1932 Vc3S01_A1940 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_A1944 SM00642 Alpha-amylase domain Vc3S01_A1945 SM00872 Alpha mannosidase, middle domain Vc3S01_A1952 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A1952 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Vc3S01_A1965 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A1968 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1974 SM00347 helix_turn_helix multiple antibiotic resistance protein Vc3S01_A1980 SM01007 Class II Aldolase and Adducin N-terminal domain Vc3S01_A1983 SM00420 helix_turn_helix, Deoxyribose operon repressor Vc3S01_A1983 SM01134 Vc3S01_A1983 Vc3S01_A1985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Vc3S01_A1988 SM00829 Enoylreductase Vc3S01_A1990 SM00344 helix_turn_helix ASNC type Vc3S01_A1992 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A1998 SM00487 DEAD-like helicases superfamily Vc3S01_A1998 SM00490 helicase superfamily c-terminal domain Vc3S01_A2003 SM00345 helix_turn_helix gluconate operon transcriptional repressor Vc3S01_A2003 SM00895 Vc3S01_A2003 Vc3S01_A2015 SM00634 Bacterial Ig-like domain (group 1) Vc3S01_A2017 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A2020 SM00344 helix_turn_helix ASNC type Vc3S01_A2026 SM00360 RNA recognition motif Vc3S01_A2031 SM00342 helix_turn_helix, arabinose operon control protein Vc3S01_A2032 SM00421 helix_turn_helix, Lux Regulon Vc3S01_A2034 SM00387 Histidine kinase-like ATPases Vc3S01_A2035 SM00448 cheY-homologous receiver domain Vc3S01_A2038 SM00052 Putative diguanylate phosphodiesterase Vc3S01_A2038 SM00267 diguanylate cyclase Vc3S01_A2039 SM00382 ATPases associated with a variety of cellular activities Vc3S01_A2057 SM00470 ParB-like nuclease domain Vc3S01_p10041 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Vc3S01_p10041 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Vc3S01_p10041 SM00493 Vc3S01_p10041 Vc3S01_p20027 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Vc3S01_p20027 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Vc3S01_p20027 SM00493 Vc3S01_p20027 Vc3S01_p20043 SM00382 ATPases associated with a variety of cellular activities Vc3S01_p20169 SM00493 Vc3S01_p20169 Vc3S01_p20190 SM00894 Excalibur calcium-binding domain Vc3S01_p20213 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_p30003 SM00052 Putative diguanylate phosphodiesterase Vc3S01_p30009 SM00862 Transcriptional regulatory protein, C terminal Vc3S01_p30016 SM00857 Resolvase, N terminal domain Vc3S01_p30021 SM00857 Resolvase, N terminal domain Vc3S01_p30038 SM00857 Resolvase, N terminal domain Vc3S01_p30039 SM00857 Resolvase, N terminal domain Vc3S01_p30046 SM00857 Resolvase, N terminal domain Vc3S01_p30049 SM00487 DEAD-like helicases superfamily Vc3S01_p30067 SM00857 Resolvase, N terminal domain Vc3S01_p30086 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Vc3S01_p30086 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Vc3S01_p30086 SM00493 Vc3S01_p30086 Vc3S01_p30105 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_p40013 SM00530 Helix-turn-helix XRE-family like proteins Vc3S01_p40041 SM00271 DnaJ molecular chaperone homology domain Vc3S01_p40075 SM00966 SpoVT / AbrB like domain Vc3S01_p40096 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Vc3S01_p40096 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Vc3S01_p40096 SM00493 Vc3S01_p40096