locus-tag class description M892_00010 PF03480 Bacterial extracellular solute-binding protein, family 7 M892_00025 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M892_00030 PF17200 Single Cache domain 2 M892_00030 PF07730 Histidine kinase M892_00035 PF13358 DDE superfamily endonuclease M892_00050 PF13358 DDE superfamily endonuclease M892_00055 PF03280 Proteobacterial lipase chaperone protein M892_00060 PF00561 alpha/beta hydrolase fold M892_00065 PF01053 Cys/Met metabolism PLP-dependent enzyme M892_00070 PF13396 Phospholipase_D-nuclease N-terminal M892_00070 PF13091 PLD-like domain M892_00075 PF00209 Sodium:neurotransmitter symporter family M892_00080 PF12729 Four helix bundle sensory module for signal transduction M892_00080 PF00672 HAMP domain M892_00080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_00085 PF00849 RNA pseudouridylate synthase M892_00095 PF13358 DDE superfamily endonuclease M892_00100 PF03063 Prismane/CO dehydrogenase family M892_00105 PF00158 Sigma-54 interaction domain M892_00105 PF01590 GAF domain M892_00120 PF07690 Major Facilitator Superfamily M892_00130 PF01066 CDP-alcohol phosphatidyltransferase M892_00135 PF00005 ABC transporter M892_00140 PF00528 Binding-protein-dependent transport system inner membrane component M892_00145 PF13416 Bacterial extracellular solute-binding protein M892_00150 PF09335 SNARE associated Golgi protein M892_00165 PF00196 Bacterial regulatory proteins, luxR family M892_00165 PF00072 Response regulator receiver domain M892_00175 PF01740 STAS domain M892_00175 PF00916 Sulfate permease family M892_00185 PF06945 Protein of unknown function (DUF1289) M892_00195 PF02872 5'-nucleotidase, C-terminal domain M892_00195 PF00149 Calcineurin-like phosphoesterase M892_00210 PF01386 Ribosomal L25p family M892_00215 PF02709 N-terminal domain of galactosyltransferase M892_00215 PF00535 Glycosyl transferase family 2 M892_00225 PF00512 His Kinase A (phospho-acceptor) domain M892_00225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_00225 PF00672 HAMP domain M892_00230 PF00072 Response regulator receiver domain M892_00230 PF00486 Transcriptional regulatory protein, C terminal M892_00240 PF04851 Type III restriction enzyme, res subunit M892_00240 PF00271 Helicase conserved C-terminal domain M892_00245 PF00849 RNA pseudouridylate synthase M892_00245 PF01479 S4 domain M892_00250 PF07690 Major Facilitator Superfamily M892_00260 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_00265 PF11066 Protein of unknown function (DUF2867) M892_00265 PF13460 NAD(P)H-binding M892_00270 PF01554 MatE M892_00275 PF00005 ABC transporter M892_00290 PF06965 Na+/H+ antiporter 1 M892_00300 PF13007 Transposase C of IS166 homeodomain M892_00300 PF13005 zinc-finger binding domain of transposase IS66 M892_00300 PF03050 Transposase IS66 family M892_00300 PF13817 IS66 C-terminal element M892_00320 PF16295 Tetracyclin repressor-like, C-terminal domain M892_00320 PF00440 Bacterial regulatory proteins, tetR family M892_00325 PF09317 Domain of unknown function (DUF1974) M892_00325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M892_00325 PF02770 Acyl-CoA dehydrogenase, middle domain M892_00325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M892_00330 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M892_00330 PF07055 Enoyl reductase FAD binding domain M892_00330 PF12241 Trans-2-enoyl-CoA reductase catalytic region M892_00335 PF02080 TrkA-C domain M892_00335 PF06826 Predicted Permease Membrane Region M892_00340 PF00462 Glutaredoxin M892_00345 PF01380 SIS domain M892_00345 PF01418 Helix-turn-helix domain, rpiR family M892_00350 PF00282 Pyridoxal-dependent decarboxylase conserved domain M892_00360 PF03956 Lysine exporter LysO M892_00370 PF04994 TfoX C-terminal domain M892_00370 PF04993 TfoX N-terminal domain M892_00385 PF00512 His Kinase A (phospho-acceptor) domain M892_00385 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_00385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_00395 PF00266 Aminotransferase class-V M892_00405 PF00990 Diguanylate cyclase, GGDEF domain M892_00405 PF00563 EAL domain M892_00405 PF08447 PAS fold M892_00405 PF08448 PAS fold M892_00430 PF13340 Putative transposase of IS4/5 family (DUF4096) M892_00440 PF12792 CSS motif domain associated with EAL M892_00440 PF00563 EAL domain M892_00445 PF13340 Putative transposase of IS4/5 family (DUF4096) M892_00450 PF00291 Pyridoxal-phosphate dependent enzyme M892_00455 PF00005 ABC transporter M892_00455 PF00664 ABC transporter transmembrane region M892_00460 PF00664 ABC transporter transmembrane region M892_00460 PF00005 ABC transporter M892_00465 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_00470 PF13358 DDE superfamily endonuclease M892_00480 PF02371 Transposase IS116/IS110/IS902 family M892_00480 PF01548 Transposase M892_00495 PF02371 Transposase IS116/IS110/IS902 family M892_00495 PF01548 Transposase M892_00500 PF02371 Transposase IS116/IS110/IS902 family M892_00500 PF01548 Transposase M892_00525 PF02371 Transposase IS116/IS110/IS902 family M892_00525 PF01548 Transposase M892_00540 PF04229 GrpB protein M892_00545 PF13247 4Fe-4S dicluster domain M892_00555 PF01568 Molydopterin dinucleotide binding domain M892_00555 PF00384 Molybdopterin oxidoreductase M892_00555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M892_00560 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_00625 PF03575 Peptidase family S51 M892_00645 PF00474 Sodium:solute symporter family M892_00660 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M892_00670 PF00356 Bacterial regulatory proteins, lacI family M892_00675 PF03328 HpcH/HpaI aldolase/citrate lyase family M892_00695 PF00561 alpha/beta hydrolase fold M892_00710 PF13358 DDE superfamily endonuclease M892_00725 PF00158 Sigma-54 interaction domain M892_00725 PF00072 Response regulator receiver domain M892_00725 PF02954 Bacterial regulatory protein, Fis family M892_00730 PF03707 Bacterial signalling protein N terminal repeat M892_00730 PF00990 Diguanylate cyclase, GGDEF domain M892_00730 PF00563 EAL domain M892_00735 PF01966 HD domain M892_00735 PF11871 Domain of unknown function (DUF3391) M892_00745 PF11230 Protein of unknown function (DUF3029) M892_00750 PF04055 Radical SAM superfamily M892_00760 PF03466 LysR substrate binding domain M892_00760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_00765 PF03741 Integral membrane protein TerC family M892_00775 PF01966 HD domain M892_00780 PF01966 HD domain M892_00785 PF00106 short chain dehydrogenase M892_00790 PF00465 Iron-containing alcohol dehydrogenase M892_00795 PF03222 Tryptophan/tyrosine permease family M892_00815 PF00005 ABC transporter M892_00815 PF00664 ABC transporter transmembrane region M892_00820 PF00664 ABC transporter transmembrane region M892_00820 PF00005 ABC transporter M892_00840 PF00012 Hsp70 protein M892_00845 PF00012 Hsp70 protein M892_00855 PF00990 Diguanylate cyclase, GGDEF domain M892_00890 PF04151 Bacterial pre-peptidase C-terminal domain M892_00890 PF02868 Thermolysin metallopeptidase, alpha-helical domain M892_00890 PF01447 Thermolysin metallopeptidase, catalytic domain M892_00890 PF03413 Peptidase propeptide and YPEB domain M892_00890 PF07504 Fungalysin/Thermolysin Propeptide Motif M892_00900 PF01568 Molydopterin dinucleotide binding domain M892_00900 PF00384 Molybdopterin oxidoreductase M892_00900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M892_00905 PF12800 4Fe-4S binding domain M892_00905 PF13247 4Fe-4S dicluster domain M892_00910 PF04976 DMSO reductase anchor subunit (DmsC) M892_00915 PF02613 Nitrate reductase delta subunit M892_00925 PF02525 Flavodoxin-like fold M892_00930 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M892_00930 PF00271 Helicase conserved C-terminal domain M892_00930 PF04408 Helicase associated domain (HA2) M892_00930 PF00270 DEAD/DEAH box helicase M892_00930 PF11898 Domain of unknown function (DUF3418) M892_00955 PF13340 Putative transposase of IS4/5 family (DUF4096) M892_00970 PF13006 Insertion element 4 transposase N-terminal M892_00970 PF01609 Transposase DDE domain M892_00975 PF13006 Insertion element 4 transposase N-terminal M892_00975 PF01609 Transposase DDE domain M892_00980 PF04204 Homoserine O-succinyltransferase M892_00985 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_01005 PF00893 Small Multidrug Resistance protein M892_01010 PF13520 Amino acid permease M892_01015 PF01810 LysE type translocator M892_01020 PF03279 Bacterial lipid A biosynthesis acyltransferase M892_01025 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_01045 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M892_01050 PF01810 LysE type translocator M892_01060 PF03440 Aerolysin/Pertussis toxin (APT) domain M892_01060 PF01117 Aerolysin toxin M892_01065 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M892_01070 PF01117 Aerolysin toxin M892_01070 PF03440 Aerolysin/Pertussis toxin (APT) domain M892_01085 PF01235 Sodium:alanine symporter family M892_01110 PF00884 Sulfatase M892_01115 PF13358 DDE superfamily endonuclease M892_01130 PF01406 tRNA synthetases class I (C) catalytic domain M892_01135 PF01554 MatE M892_01140 PF00571 CBS domain M892_01150 PF02028 BCCT, betaine/carnitine/choline family transporter M892_01155 PF00583 Acetyltransferase (GNAT) family M892_01160 PF00202 Aminotransferase class-III M892_01165 PF06339 Ectoine synthase M892_01170 PF13840 ACT domain M892_01170 PF00696 Amino acid kinase family M892_01180 PF03150 Di-haem cytochrome c peroxidase M892_01180 PF00034 Cytochrome c M892_01185 PF04151 Bacterial pre-peptidase C-terminal domain M892_01185 PF00082 Subtilase family M892_01185 PF05922 Peptidase inhibitor I9 M892_01190 PF03413 Peptidase propeptide and YPEB domain M892_01190 PF01447 Thermolysin metallopeptidase, catalytic domain M892_01190 PF04151 Bacterial pre-peptidase C-terminal domain M892_01190 PF07504 Fungalysin/Thermolysin Propeptide Motif M892_01190 PF02868 Thermolysin metallopeptidase, alpha-helical domain M892_01195 PF13737 Transposase DDE domain M892_01220 PF13005 zinc-finger binding domain of transposase IS66 M892_01220 PF03050 Transposase IS66 family M892_01220 PF13817 IS66 C-terminal element M892_01220 PF13007 Transposase C of IS166 homeodomain M892_01235 PF13333 Integrase core domain M892_01235 PF00665 Integrase core domain M892_01235 PF13276 HTH-like domain M892_01250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_01270 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M892_01270 PF17203 Single cache domain 3 M892_01270 PF00989 PAS fold M892_01270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_01275 PF00072 Response regulator receiver domain M892_01275 PF12431 Transcriptional regulator M892_01280 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M892_01280 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M892_01285 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M892_01290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M892_01290 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M892_01295 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_01310 PF02954 Bacterial regulatory protein, Fis family M892_01310 PF00158 Sigma-54 interaction domain M892_01310 PF01590 GAF domain M892_01315 PF00171 Aldehyde dehydrogenase family M892_01320 PF16868 NMT1-like family M892_01325 PF02743 Cache domain M892_01325 PF00672 HAMP domain M892_01325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_01330 PF01925 Sulfite exporter TauE/SafE M892_01335 PF01970 Tripartite tricarboxylate transporter TctA family M892_01355 PF13276 HTH-like domain M892_01355 PF00665 Integrase core domain M892_01355 PF13333 Integrase core domain M892_01365 PF13817 IS66 C-terminal element M892_01365 PF13007 Transposase C of IS166 homeodomain M892_01365 PF13005 zinc-finger binding domain of transposase IS66 M892_01365 PF03050 Transposase IS66 family M892_01410 PF13005 zinc-finger binding domain of transposase IS66 M892_01410 PF03050 Transposase IS66 family M892_01410 PF13817 IS66 C-terminal element M892_01410 PF13007 Transposase C of IS166 homeodomain M892_01420 PF01966 HD domain M892_01435 PF00285 Citrate synthase, C-terminal domain M892_01440 PF00694 Aconitase C-terminal domain M892_01440 PF00330 Aconitase family (aconitate hydratase) M892_01445 PF04303 PrpF protein M892_01450 PF00501 AMP-binding enzyme M892_01450 PF16177 Acetyl-coenzyme A synthetase N-terminus M892_01450 PF13193 AMP-binding enzyme C-terminal domain M892_01460 PF00150 Cellulase (glycosyl hydrolase family 5) M892_01465 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M892_01465 PF18416 N-acetylglucosamine binding protein domain 2 M892_01490 PF04055 Radical SAM superfamily M892_01495 PF06508 Queuosine biosynthesis protein QueC M892_01500 PF00990 Diguanylate cyclase, GGDEF domain M892_01500 PF17158 Membrane-associated sensor, integral membrane domain M892_01520 PF13817 IS66 C-terminal element M892_01520 PF13007 Transposase C of IS166 homeodomain M892_01520 PF13005 zinc-finger binding domain of transposase IS66 M892_01520 PF03050 Transposase IS66 family M892_01535 PF00691 OmpA family M892_01535 PF05736 OprF membrane domain M892_01550 PF10672 S-adenosylmethionine-dependent methyltransferase M892_01550 PF17785 PUA-like domain M892_01565 PF00708 Acylphosphatase M892_01570 PF04358 DsrC like protein M892_01575 PF01027 Inhibitor of apoptosis-promoting Bax1 M892_01580 PF00005 ABC transporter M892_01590 PF00528 Binding-protein-dependent transport system inner membrane component M892_01595 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_01600 PF14824 Sirohaem biosynthesis protein central M892_01600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M892_01600 PF10414 Sirohaem synthase dimerisation region M892_01605 PF04461 Protein of unknown function (DUF520) M892_01610 PF00793 DAHP synthetase I family M892_01630 PF01189 16S rRNA methyltransferase RsmB/F M892_01630 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF M892_01630 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF M892_01635 PF02470 MlaD protein M892_01640 PF04403 Paraquat-inducible protein A M892_01650 PF13185 GAF domain M892_01655 PF17516 ProQ C-terminal domain M892_01655 PF04352 ProQ/FINO family M892_01660 PF11818 C-terminal domain of tail specific protease (DUF3340) M892_01660 PF17804 Tail specific protease N-terminal domain M892_01660 PF00595 PDZ domain M892_01660 PF03572 Peptidase family S41 M892_01670 PF11940 Domain of unknown function (DUF3458) Ig-like fold M892_01670 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M892_01670 PF01433 Peptidase family M1 domain M892_01680 PF05088 Bacterial NAD-glutamate dehydrogenase M892_01685 PF14706 Transposase DNA-binding M892_01685 PF02281 Transposase Tn5 dimerisation domain M892_01685 PF01609 Transposase DDE domain M892_01690 PF01180 Dihydroorotate dehydrogenase M892_01695 PF07126 Cell-division protein ZapC M892_01700 PF01170 Putative RNA methylase family UPF0020 M892_01700 PF02926 THUMP domain M892_01700 PF10672 S-adenosylmethionine-dependent methyltransferase M892_01720 PF07977 FabA-like domain M892_01730 PF17414 MatP C-terminal ribbon-helix-helix domain M892_01730 PF06303 MatP N-terminal domain M892_01745 PF00665 Integrase core domain M892_01745 PF13333 Integrase core domain M892_01745 PF13276 HTH-like domain M892_01835 PF09308 LuxQ, periplasmic M892_01835 PF00072 Response regulator receiver domain M892_01835 PF00512 His Kinase A (phospho-acceptor) domain M892_01835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_01850 PF00115 Cytochrome C and Quinol oxidase polypeptide I M892_01865 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M892_01865 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP M892_01885 PF13545 Crp-like helix-turn-helix domain M892_01885 PF00027 Cyclic nucleotide-binding domain M892_01890 PF00582 Universal stress protein family M892_01895 PF01171 PP-loop family M892_01920 PF00528 Binding-protein-dependent transport system inner membrane component M892_01925 PF00528 Binding-protein-dependent transport system inner membrane component M892_01930 PF13416 Bacterial extracellular solute-binding protein M892_01940 PF02146 Sir2 family M892_01950 PF01609 Transposase DDE domain M892_01950 PF02281 Transposase Tn5 dimerisation domain M892_01950 PF14706 Transposase DNA-binding M892_01955 PF01609 Transposase DDE domain M892_01955 PF14706 Transposase DNA-binding M892_01955 PF02281 Transposase Tn5 dimerisation domain M892_01970 PF13247 4Fe-4S dicluster domain M892_01975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M892_01975 PF00384 Molybdopterin oxidoreductase M892_01975 PF01568 Molydopterin dinucleotide binding domain M892_01985 PF02613 Nitrate reductase delta subunit M892_02005 PF02634 FdhD/NarQ family M892_02015 PF00005 ABC transporter M892_02015 PF12848 ABC transporter M892_02030 PF00512 His Kinase A (phospho-acceptor) domain M892_02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_02035 PF00158 Sigma-54 interaction domain M892_02035 PF02954 Bacterial regulatory protein, Fis family M892_02035 PF00072 Response regulator receiver domain M892_02040 PF12849 PBP superfamily domain M892_02045 PF00528 Binding-protein-dependent transport system inner membrane component M892_02050 PF00005 ABC transporter M892_02050 PF08402 TOBE domain M892_02055 PF12804 MobA-like NTP transferase domain M892_02060 PF00994 Probable molybdopterin binding domain M892_02060 PF03454 MoeA C-terminal region (domain IV) M892_02060 PF03453 MoeA N-terminal region (domain I and II) M892_02075 PF00480 ROK family M892_02115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_02130 PF00672 HAMP domain M892_02130 PF12729 Four helix bundle sensory module for signal transduction M892_02130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_02135 PF00877 NlpC/P60 family M892_02145 PF05230 MASE2 domain M892_02145 PF00990 Diguanylate cyclase, GGDEF domain M892_02150 PF00072 Response regulator receiver domain M892_02150 PF01339 CheB methylesterase M892_02165 PF00677 Lumazine binding domain M892_02170 PF01554 MatE M892_02185 PF01740 STAS domain M892_02190 PF00691 OmpA family M892_02195 PF02563 Polysaccharide biosynthesis/export protein M892_02195 PF10531 SLBB domain M892_02210 PF00158 Sigma-54 interaction domain M892_02210 PF00072 Response regulator receiver domain M892_02210 PF02954 Bacterial regulatory protein, Fis family M892_02215 PF13439 Glycosyltransferase Family 4 M892_02215 PF00534 Glycosyl transferases group 1 M892_02220 PF00534 Glycosyl transferases group 1 M892_02250 PF00534 Glycosyl transferases group 1 M892_02250 PF13439 Glycosyltransferase Family 4 M892_02260 PF02397 Bacterial sugar transferase M892_02285 PF00990 Diguanylate cyclase, GGDEF domain M892_02285 PF00563 EAL domain M892_02285 PF13188 PAS domain M892_02285 PF03707 Bacterial signalling protein N terminal repeat M892_02290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M892_02290 PF00672 HAMP domain M892_02290 PF00072 Response regulator receiver domain M892_02290 PF01627 Hpt domain M892_02290 PF00512 His Kinase A (phospho-acceptor) domain M892_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_02310 PF12464 Maltose acetyltransferase M892_02310 PF00132 Bacterial transferase hexapeptide (six repeats) M892_02315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_02315 PF00512 His Kinase A (phospho-acceptor) domain M892_02315 PF00072 Response regulator receiver domain M892_02315 PF09308 LuxQ, periplasmic M892_02325 PF01928 CYTH domain M892_02340 PF01047 MarR family M892_02355 PF03729 Short repeat of unknown function (DUF308) M892_02360 PF00924 Mechanosensitive ion channel M892_02375 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family M892_02380 PF13673 Acetyltransferase (GNAT) domain M892_02395 PF05552 Conserved TM helix M892_02395 PF00924 Mechanosensitive ion channel M892_02400 PF14706 Transposase DNA-binding M892_02400 PF01609 Transposase DDE domain M892_02400 PF02281 Transposase Tn5 dimerisation domain M892_02420 PF07859 alpha/beta hydrolase fold M892_02420 PF00934 PE family M892_02440 PF14497 Glutathione S-transferase, C-terminal domain M892_02440 PF02798 Glutathione S-transferase, N-terminal domain M892_02450 PF04209 homogentisate 1,2-dioxygenase M892_02455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_02465 PF13358 DDE superfamily endonuclease M892_02470 PF07687 Peptidase dimerisation domain M892_02470 PF01546 Peptidase family M20/M25/M40 M892_02480 PF13358 DDE superfamily endonuclease M892_02520 PF00348 Polyprenyl synthetase M892_02525 PF01036 Bacteriorhodopsin-like protein M892_02535 PF13737 Transposase DDE domain M892_02540 PF13358 DDE superfamily endonuclease M892_02555 PF13737 Transposase DDE domain M892_02580 PF05971 RNA methyltransferase M892_02585 PF01863 Protein of unknown function DUF45 M892_02595 PF03050 Transposase IS66 family M892_02595 PF13005 zinc-finger binding domain of transposase IS66 M892_02595 PF13007 Transposase C of IS166 homeodomain M892_02595 PF13817 IS66 C-terminal element M892_02610 PF03466 LysR substrate binding domain M892_02610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_02615 PF07690 Major Facilitator Superfamily M892_02635 PF13358 DDE superfamily endonuclease M892_02640 PF00005 ABC transporter M892_02645 PF01032 FecCD transport family M892_02650 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M892_02665 PF00300 Histidine phosphatase superfamily (branch 1) M892_02670 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M892_02675 PF02654 Cobalamin-5-phosphate synthase M892_02680 PF02277 Phosphoribosyltransferase M892_02685 PF01613 Flavin reductase like domain M892_02690 PF13460 NAD(P)H-binding M892_02705 PF00929 Exonuclease M892_02705 PF08411 Exonuclease C-terminal M892_02710 PF03788 LrgA family M892_02715 PF04172 LrgB-like family M892_02720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M892_02720 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M892_02725 PF02222 ATP-grasp domain M892_02730 PF05724 Thiopurine S-methyltransferase (TPMT) M892_02740 PF00216 Bacterial DNA-binding protein M892_02755 PF01032 FecCD transport family M892_02760 PF01032 FecCD transport family M892_02765 PF01497 Periplasmic binding protein M892_02770 PF00593 TonB dependent receptor M892_02770 PF07715 TonB-dependent Receptor Plug Domain M892_02775 PF00668 Condensation domain M892_02775 PF00501 AMP-binding enzyme M892_02775 PF13193 AMP-binding enzyme C-terminal domain M892_02780 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) M892_02785 PF00501 AMP-binding enzyme M892_02785 PF00550 Phosphopantetheine attachment site M892_02785 PF00668 Condensation domain M892_02790 PF00282 Pyridoxal-dependent decarboxylase conserved domain M892_02795 PF00005 ABC transporter M892_02800 PF00664 ABC transporter transmembrane region M892_02800 PF00005 ABC transporter M892_02805 PF00857 Isochorismatase family M892_02805 PF00550 Phosphopantetheine attachment site M892_02820 PF13005 zinc-finger binding domain of transposase IS66 M892_02820 PF13007 Transposase C of IS166 homeodomain M892_02820 PF13817 IS66 C-terminal element M892_02820 PF03050 Transposase IS66 family M892_02830 PF03484 tRNA synthetase B5 domain M892_02830 PF03147 Ferredoxin-fold anticodon binding domain M892_02830 PF03483 B3/4 domain M892_02830 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M892_02830 PF01588 Putative tRNA binding domain M892_02835 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M892_02835 PF01409 tRNA synthetases class II core domain (F) M892_02845 PF01906 Putative heavy-metal-binding M892_02850 PF01042 Endoribonuclease L-PSP M892_02870 PF13007 Transposase C of IS166 homeodomain M892_02870 PF03050 Transposase IS66 family M892_02870 PF13817 IS66 C-terminal element M892_02870 PF13005 zinc-finger binding domain of transposase IS66 M892_02875 PF00453 Ribosomal protein L20 M892_02880 PF01632 Ribosomal protein L35 M892_02885 PF00707 Translation initiation factor IF-3, C-terminal domain M892_02885 PF05198 Translation initiation factor IF-3, N-terminal domain M892_02890 PF02824 TGS domain M892_02890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M892_02890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M892_02890 PF03129 Anticodon binding domain M892_02905 PF00392 Bacterial regulatory proteins, gntR family M892_02905 PF07702 UTRA domain M892_02910 PF01979 Amidohydrolase family M892_02915 PF00491 Arginase family M892_02920 PF17391 Urocanase N-terminal domain M892_02920 PF17392 Urocanase C-terminal domain M892_02920 PF01175 Urocanase Rossmann-like domain M892_02925 PF00221 Aromatic amino acid lyase M892_02945 PF03496 ADP-ribosyltransferase exoenzyme M892_02950 PF03496 ADP-ribosyltransferase exoenzyme M892_02970 PF13183 4Fe-4S dicluster domain M892_02970 PF02913 FAD linked oxidases, C-terminal domain M892_02970 PF01565 FAD binding domain M892_02985 PF05736 OprF membrane domain M892_02985 PF00691 OmpA family M892_03080 PF01259 SAICAR synthetase M892_03085 PF16655 PhoD-like phosphatase, N-terminal domain M892_03085 PF09423 PhoD-like phosphatase M892_03095 PF02253 Phospholipase A1 M892_03100 PF08482 ATP-dependent helicase C-terminal M892_03100 PF00271 Helicase conserved C-terminal domain M892_03100 PF00270 DEAD/DEAH box helicase M892_03100 PF04408 Helicase associated domain (HA2) M892_03105 PF03949 Malic enzyme, NAD binding domain M892_03105 PF00390 Malic enzyme, N-terminal domain M892_03110 PF02698 DUF218 domain M892_03115 PF00939 Sodium:sulfate symporter transmembrane region M892_03120 PF00072 Response regulator receiver domain M892_03120 PF00990 Diguanylate cyclase, GGDEF domain M892_03135 PF00266 Aminotransferase class-V M892_03150 PF13358 DDE superfamily endonuclease M892_03165 PF03050 Transposase IS66 family M892_03165 PF13005 zinc-finger binding domain of transposase IS66 M892_03165 PF13817 IS66 C-terminal element M892_03165 PF13007 Transposase C of IS166 homeodomain M892_03185 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_03220 PF00589 Phage integrase family M892_03220 PF13495 Phage integrase, N-terminal SAM-like domain M892_03320 PF03864 Phage major capsid protein E M892_03330 PF01957 NfeD-like C-terminal, partner-binding M892_03330 PF01972 Serine dehydrogenase proteinase M892_03360 PF00959 Phage lysozyme M892_03415 PF06147 Protein of unknown function (DUF968) M892_03435 PF03354 Phage Terminase M892_03460 PF01381 Helix-turn-helix M892_03465 PF01381 Helix-turn-helix M892_03465 PF00717 Peptidase S24-like M892_03480 PF10065 Uncharacterized conserved protein (DUF2303) M892_03500 PF00589 Phage integrase family M892_03500 PF12167 Arm DNA-binding domain M892_03510 PF13276 HTH-like domain M892_03510 PF00665 Integrase core domain M892_03510 PF13333 Integrase core domain M892_03545 PF13005 zinc-finger binding domain of transposase IS66 M892_03545 PF13007 Transposase C of IS166 homeodomain M892_03545 PF13817 IS66 C-terminal element M892_03545 PF03050 Transposase IS66 family M892_03570 PF13005 zinc-finger binding domain of transposase IS66 M892_03570 PF03050 Transposase IS66 family M892_03570 PF13817 IS66 C-terminal element M892_03570 PF13007 Transposase C of IS166 homeodomain M892_03615 PF13302 Acetyltransferase (GNAT) domain M892_03620 PF00158 Sigma-54 interaction domain M892_03620 PF18024 Helix-turn-helix domain M892_03625 PF05128 Domain of unknown function (DUF697) M892_03630 PF04317 YcjX-like family, DUF463 M892_03645 PF00425 chorismate binding enzyme M892_03645 PF04715 Anthranilate synthase component I, N terminal region M892_03655 PF00293 NUDIX domain M892_03660 PF03222 Tryptophan/tyrosine permease family M892_03665 PF03313 Serine dehydratase alpha chain M892_03665 PF03315 Serine dehydratase beta chain M892_03670 PF13006 Insertion element 4 transposase N-terminal M892_03670 PF01609 Transposase DDE domain M892_03675 PF00563 EAL domain M892_03675 PF03707 Bacterial signalling protein N terminal repeat M892_03675 PF00990 Diguanylate cyclase, GGDEF domain M892_03690 PF00072 Response regulator receiver domain M892_03690 PF00196 Bacterial regulatory proteins, luxR family M892_03695 PF01242 6-pyruvoyl tetrahydropterin synthase M892_03700 PF08447 PAS fold M892_03700 PF13426 PAS domain M892_03700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_03710 PF01336 OB-fold nucleic acid binding domain M892_03710 PF00152 tRNA synthetases class II (D, K and N) M892_03725 PF00392 Bacterial regulatory proteins, gntR family M892_03725 PF00155 Aminotransferase class I and II M892_03740 PF00155 Aminotransferase class I and II M892_03760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_03760 PF02743 Cache domain M892_03760 PF00672 HAMP domain M892_03765 PF02028 BCCT, betaine/carnitine/choline family transporter M892_03770 PF01047 MarR family M892_03775 PF00196 Bacterial regulatory proteins, luxR family M892_03775 PF00072 Response regulator receiver domain M892_03780 PF13358 DDE superfamily endonuclease M892_03790 PF03352 Methyladenine glycosylase M892_03795 PF00873 AcrB/AcrD/AcrF family M892_03800 PF13533 Biotin-lipoyl like M892_03805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_03810 PF04024 PspC domain M892_03815 PF06667 Phage shock protein B M892_03820 PF04012 PspA/IM30 family M892_03825 PF00158 Sigma-54 interaction domain M892_03825 PF02954 Bacterial regulatory protein, Fis family M892_03830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M892_03835 PF00528 Binding-protein-dependent transport system inner membrane component M892_03840 PF12911 N-terminal TM domain of oligopeptide transport permease C M892_03840 PF00528 Binding-protein-dependent transport system inner membrane component M892_03845 PF00005 ABC transporter M892_03845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M892_03850 PF00005 ABC transporter M892_03855 PF14706 Transposase DNA-binding M892_03855 PF02281 Transposase Tn5 dimerisation domain M892_03855 PF01609 Transposase DDE domain M892_03860 PF00665 Integrase core domain M892_03860 PF13333 Integrase core domain M892_03860 PF13276 HTH-like domain M892_03880 PF02833 DHHA2 domain M892_03880 PF01368 DHH family M892_03890 PF16875 Glycosyl hydrolase family 36 N-terminal domain M892_03890 PF16874 Glycosyl hydrolase family 36 C-terminal domain M892_03895 PF18364 Molybdopterin oxidoreductase N-terminal domain M892_03895 PF01568 Molydopterin dinucleotide binding domain M892_03895 PF00384 Molybdopterin oxidoreductase M892_03905 PF06796 Periplasmic nitrate reductase protein NapE M892_03910 PF03649 Uncharacterised protein family (UPF0014) M892_03920 PF01226 Formate/nitrite transporter M892_03945 PF02698 DUF218 domain M892_03950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_03965 PF00265 Thymidine kinase M892_03970 PF09190 DALR domain M892_03970 PF01406 tRNA synthetases class I (C) catalytic domain M892_03975 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M892_03980 PF00149 Calcineurin-like phosphoesterase M892_03985 PF02810 SEC-C motif M892_03990 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M892_03990 PF01502 Phosphoribosyl-AMP cyclohydrolase M892_03995 PF00977 Histidine biosynthesis protein M892_04000 PF00977 Histidine biosynthesis protein M892_04005 PF00117 Glutamine amidotransferase class-I M892_04010 PF00475 Imidazoleglycerol-phosphate dehydratase M892_04010 PF08645 Polynucleotide kinase 3 phosphatase M892_04015 PF00155 Aminotransferase class I and II M892_04020 PF00815 Histidinol dehydrogenase M892_04025 PF08029 HisG, C-terminal domain M892_04025 PF01634 ATP phosphoribosyltransferase M892_04030 PF03553 Na+/H+ antiporter family M892_04035 PF00816 H-NS histone family M892_04040 PF00294 pfkB family carbohydrate kinase M892_04055 PF04356 Protein of unknown function (DUF489) M892_04060 PF00206 Lyase M892_04060 PF08328 Adenylosuccinate lyase C-terminal M892_04095 PF00106 short chain dehydrogenase M892_04105 PF01435 Peptidase family M48 M892_04115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_04125 PF08241 Methyltransferase domain M892_04130 PF00155 Aminotransferase class I and II M892_04135 PF04055 Radical SAM superfamily M892_04135 PF06968 Biotin and Thiamin Synthesis associated domain M892_04145 PF01258 Prokaryotic dksA/traR C4-type zinc finger M892_04165 PF13358 DDE superfamily endonuclease M892_04175 PF12002 MgsA AAA+ ATPase C terminal M892_04175 PF00004 ATPase family associated with various cellular activities (AAA) M892_04175 PF16193 AAA C-terminal domain M892_04180 PF03548 Outer membrane lipoprotein carrier protein LolA M892_04185 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M892_04185 PF17854 FtsK alpha domain M892_04185 PF09397 Ftsk gamma domain M892_04185 PF01580 FtsK/SpoIIIE family M892_04190 PF01037 Lrp/AsnC ligand binding domain M892_04195 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M892_04195 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M892_04215 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M892_04220 PF01548 Transposase M892_04220 PF02371 Transposase IS116/IS110/IS902 family M892_04235 PF01979 Amidohydrolase family M892_04240 PF08453 Peptidase family M9 N-terminal M892_04240 PF04151 Bacterial pre-peptidase C-terminal domain M892_04240 PF01752 Collagenase M892_04255 PF13007 Transposase C of IS166 homeodomain M892_04255 PF13817 IS66 C-terminal element M892_04255 PF03050 Transposase IS66 family M892_04255 PF13005 zinc-finger binding domain of transposase IS66 M892_04275 PF00145 C-5 cytosine-specific DNA methylase M892_04280 PF03372 Endonuclease/Exonuclease/phosphatase family M892_04295 PF01548 Transposase M892_04295 PF02371 Transposase IS116/IS110/IS902 family M892_04300 PF00579 tRNA synthetases class I (W and Y) M892_04305 PF00141 Peroxidase M892_04310 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_04310 PF01464 Transglycosylase SLT domain M892_04325 PF13340 Putative transposase of IS4/5 family (DUF4096) M892_04340 PF00005 ABC transporter M892_04345 PF01032 FecCD transport family M892_04350 PF01032 FecCD transport family M892_04360 PF07715 TonB-dependent Receptor Plug Domain M892_04360 PF00593 TonB dependent receptor M892_04370 PF03606 C4-dicarboxylate anaerobic carrier M892_04375 PF07687 Peptidase dimerisation domain M892_04375 PF01546 Peptidase family M20/M25/M40 M892_04380 PF00392 Bacterial regulatory proteins, gntR family M892_04380 PF07729 FCD domain M892_04390 PF00873 AcrB/AcrD/AcrF family M892_04395 PF00529 HlyD membrane-fusion protein of T1SS M892_04395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_04405 PF00672 HAMP domain M892_04405 PF02743 Cache domain M892_04405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_04415 PF08274 PhnA Zinc-Ribbon M892_04415 PF03831 PhnA domain M892_04435 PF01609 Transposase DDE domain M892_04435 PF13006 Insertion element 4 transposase N-terminal M892_04455 PF05844 YopD protein M892_04465 PF07720 Tetratricopeptide repeat M892_04470 PF04792 V antigen (LcrV) protein M892_04480 PF09621 Type III secretion system regulator (LcrR) M892_04485 PF00771 FHIPEP family M892_04505 PF09059 TyeA M892_04510 PF07201 HrpJ-like domain M892_04515 PF02874 ATP synthase alpha/beta family, beta-barrel domain M892_04515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M892_04515 PF18269 T3SS EscN ATPase C-terminal domain M892_04530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M892_04535 PF00813 FliP family M892_04540 PF01313 Bacterial export proteins, family 3 M892_04545 PF01311 Bacterial export proteins, family 1 M892_04550 PF01312 FlhB HrpN YscU SpaS Family M892_04555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_04555 PF03466 LysR substrate binding domain M892_04570 PF13358 DDE superfamily endonuclease M892_04580 PF13358 DDE superfamily endonuclease M892_04585 PF13358 DDE superfamily endonuclease M892_04590 PF02661 Fic/DOC family M892_04610 PF02108 Flagellar assembly protein FliH M892_04620 PF01514 Secretory protein of YscJ/FliF family M892_04625 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M892_04640 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M892_04670 PF12833 Helix-turn-helix domain M892_04720 PF13006 Insertion element 4 transposase N-terminal M892_04720 PF01609 Transposase DDE domain M892_04760 PF00665 Integrase core domain M892_04765 PF01527 Transposase M892_04785 PF13737 Transposase DDE domain M892_04790 PF01609 Transposase DDE domain M892_04790 PF13808 DDE_Tnp_1-associated M892_04800 PF13276 HTH-like domain M892_04800 PF00665 Integrase core domain M892_04800 PF13333 Integrase core domain M892_04810 PF13542 Helix-turn-helix domain of transposase family ISL3 M892_04810 PF01610 Transposase M892_04810 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M892_04815 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M892_04815 PF01610 Transposase M892_04815 PF13542 Helix-turn-helix domain of transposase family ISL3 M892_04825 PF13737 Transposase DDE domain M892_04830 PF13358 DDE superfamily endonuclease M892_04845 PF13007 Transposase C of IS166 homeodomain M892_04845 PF13005 zinc-finger binding domain of transposase IS66 M892_04845 PF03050 Transposase IS66 family M892_04845 PF13817 IS66 C-terminal element M892_04900 PF03050 Transposase IS66 family M892_04900 PF13007 Transposase C of IS166 homeodomain M892_04900 PF13817 IS66 C-terminal element M892_04900 PF13005 zinc-finger binding domain of transposase IS66 M892_04905 PF13358 DDE superfamily endonuclease M892_04955 PF00501 AMP-binding enzyme M892_04955 PF16177 Acetyl-coenzyme A synthetase N-terminus M892_04955 PF13193 AMP-binding enzyme C-terminal domain M892_04960 PF06314 Acetoacetate decarboxylase (ADC) M892_04965 PF00871 Acetokinase family M892_04970 PF01515 Phosphate acetyl/butaryl transferase M892_04975 PF02803 Thiolase, C-terminal domain M892_04975 PF00108 Thiolase, N-terminal domain M892_05000 PF13817 IS66 C-terminal element M892_05000 PF13005 zinc-finger binding domain of transposase IS66 M892_05000 PF03050 Transposase IS66 family M892_05000 PF13007 Transposase C of IS166 homeodomain M892_05015 PF00589 Phage integrase family M892_05015 PF14659 Phage integrase, N-terminal SAM-like domain M892_05015 PF13356 Arm DNA-binding domain M892_05025 PF06610 L-alanine exporter M892_05030 PF09308 LuxQ, periplasmic M892_05030 PF00512 His Kinase A (phospho-acceptor) domain M892_05030 PF00072 Response regulator receiver domain M892_05030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_05040 PF03738 Glutathionylspermidine synthase preATP-grasp M892_05050 PF03994 Domain of Unknown Function (DUF350) M892_05060 PF02445 Quinolinate synthetase A protein M892_05065 PF13174 Tetratricopeptide repeat M892_05065 PF16331 TolA binding protein trimerisation M892_05070 PF00691 OmpA family M892_05075 PF04052 TolB amino-terminal domain M892_05075 PF07676 WD40-like Beta Propeller Repeat M892_05085 PF02472 Biopolymer transport protein ExbD/TolR M892_05090 PF01618 MotA/TolQ/ExbB proton channel family M892_05095 PF03061 Thioesterase superfamily M892_05105 PF08173 Membrane bound YbgT-like protein M892_05110 PF02322 Cytochrome bd terminal oxidase subunit II M892_05115 PF01654 Cytochrome bd terminal oxidase subunit I M892_05120 PF17864 RuvB AAA lid domain M892_05120 PF05491 RuvB C-terminal winged helix domain M892_05120 PF05496 Holliday junction DNA helicase RuvB P-loop domain M892_05125 PF07499 RuvA, C-terminal domain M892_05125 PF01330 RuvA N terminal domain M892_05130 PF00672 HAMP domain M892_05130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_05130 PF02203 Tar ligand binding domain homologue M892_05135 PF02075 Crossover junction endodeoxyribonuclease RuvC M892_05140 PF01336 OB-fold nucleic acid binding domain M892_05140 PF02938 GAD domain M892_05140 PF00152 tRNA synthetases class II (D, K and N) M892_05145 PF01904 Protein of unknown function DUF72 M892_05150 PF13649 Methyltransferase domain M892_05155 PF08003 Protein of unknown function (DUF1698) M892_05160 PF18030 RimK PreATP-grasp domain M892_05160 PF08443 RimK-like ATP-grasp domain M892_05180 PF16330 MukB hinge domain M892_05180 PF04310 MukB N-terminal M892_05185 PF04288 MukE-like family M892_05190 PF17192 MukF middle domain M892_05190 PF17193 MukF C-terminal domain M892_05190 PF03882 MukF winged-helix domain M892_05200 PF02698 DUF218 domain M892_05205 PF01609 Transposase DDE domain M892_05205 PF13006 Insertion element 4 transposase N-terminal M892_05210 PF00072 Response regulator receiver domain M892_05210 PF00486 Transcriptional regulatory protein, C terminal M892_05215 PF02613 Nitrate reductase delta subunit M892_05220 PF00356 Bacterial regulatory proteins, lacI family M892_05225 PF04993 TfoX N-terminal domain M892_05225 PF04994 TfoX C-terminal domain M892_05245 PF08323 Starch synthase catalytic domain M892_05245 PF00534 Glycosyl transferases group 1 M892_05250 PF00483 Nucleotidyl transferase M892_05255 PF01131 DNA topoisomerase M892_05255 PF01751 Toprim domain M892_05255 PF08272 Topoisomerase I zinc-ribbon-like M892_05255 PF01396 Topoisomerase DNA binding C4 zinc finger M892_05265 PF10692 Protein of unknown function (DUF2498) M892_05270 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M892_05280 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M892_05285 PF04377 Arginine-tRNA-protein transferase, C terminus M892_05285 PF04376 Arginine-tRNA-protein transferase, N terminus M892_05290 PF01176 Translation initiation factor 1A / IF-1 M892_05295 PF02861 Clp amino terminal domain, pathogenicity island component M892_05295 PF17871 AAA lid domain M892_05295 PF07724 AAA domain (Cdc48 subfamily) M892_05295 PF10431 C-terminal, D2-small domain, of ClpB protein M892_05295 PF00004 ATPase family associated with various cellular activities (AAA) M892_05300 PF02617 ATP-dependent Clp protease adaptor protein ClpS M892_05305 PF00313 'Cold-shock' DNA-binding domain M892_05310 PF03971 Monomeric isocitrate dehydrogenase M892_05315 PF00849 RNA pseudouridylate synthase M892_05320 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M892_05330 PF06733 DEAD_2 M892_05330 PF13307 Helicase C-terminal domain M892_05335 PF01925 Sulfite exporter TauE/SafE M892_05340 PF07445 Primosomal replication protein priC M892_05345 PF10689 Protein of unknown function (DUF2496) M892_05350 PF03372 Endonuclease/Exonuclease/phosphatase family M892_05355 PF00528 Binding-protein-dependent transport system inner membrane component M892_05360 PF00528 Binding-protein-dependent transport system inner membrane component M892_05365 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_05370 PF00005 ABC transporter M892_05385 PF02901 Pyruvate formate lyase-like M892_05385 PF01228 Glycine radical M892_05395 PF04055 Radical SAM superfamily M892_05405 PF03887 YfbU domain M892_05410 PF08298 PrkA AAA domain M892_05410 PF06798 PrkA serine protein kinase C-terminal domain M892_05415 PF04285 Protein of unknown function (DUF444) M892_05420 PF04293 SpoVR like protein M892_05425 PF02348 Cytidylyltransferase M892_05430 PF03966 Trm112p-like protein M892_05435 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M892_05440 PF00664 ABC transporter transmembrane region M892_05440 PF00005 ABC transporter M892_05445 PF03772 Competence protein M892_05445 PF13567 Domain of unknown function (DUF4131) M892_05445 PF00753 Metallo-beta-lactamase superfamily M892_05455 PF12704 MacB-like periplasmic core domain M892_05455 PF02687 FtsX-like permease family M892_05460 PF00005 ABC transporter M892_05465 PF12704 MacB-like periplasmic core domain M892_05465 PF02687 FtsX-like permease family M892_05475 PF00270 DEAD/DEAH box helicase M892_05475 PF17757 UvrB interaction domain M892_05475 PF03461 TRCF domain M892_05475 PF02559 CarD-like/TRCF domain M892_05475 PF00271 Helicase conserved C-terminal domain M892_05490 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_05495 PF05728 Uncharacterised protein family (UPF0227) M892_05505 PF13036 Peptidoglycan-synthase activator LpoB M892_05505 PF08139 Prokaryotic membrane lipoprotein lipid attachment site M892_05520 PF01230 HIT domain M892_05525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_05525 PF00672 HAMP domain M892_05535 PF01048 Phosphorylase superfamily M892_05540 PF00403 Heavy-metal-associated domain M892_05545 PF01554 MatE M892_05550 PF00478 IMP dehydrogenase / GMP reductase domain M892_05550 PF00571 CBS domain M892_05560 PF11953 Domain of unknown function (DUF3470) M892_05560 PF00037 4Fe-4S binding domain M892_05565 PF08032 RNA 2'-O ribose methyltransferase substrate binding M892_05565 PF00588 SpoU rRNA Methylase family M892_05590 PF13276 HTH-like domain M892_05590 PF00665 Integrase core domain M892_05590 PF13333 Integrase core domain M892_05600 PF13737 Transposase DDE domain M892_05620 PF02374 Anion-transporting ATPase M892_05625 PF06953 Arsenical resistance operon trans-acting repressor ArsD M892_05630 PF13737 Transposase DDE domain M892_05660 PF13007 Transposase C of IS166 homeodomain M892_05660 PF13005 zinc-finger binding domain of transposase IS66 M892_05660 PF03050 Transposase IS66 family M892_05660 PF13817 IS66 C-terminal element M892_05670 PF13007 Transposase C of IS166 homeodomain M892_05670 PF13817 IS66 C-terminal element M892_05670 PF03050 Transposase IS66 family M892_05670 PF13005 zinc-finger binding domain of transposase IS66 M892_05675 PF00581 Rhodanese-like domain M892_05730 PF13817 IS66 C-terminal element M892_05730 PF13007 Transposase C of IS166 homeodomain M892_05730 PF13005 zinc-finger binding domain of transposase IS66 M892_05730 PF03050 Transposase IS66 family M892_05755 PF13005 zinc-finger binding domain of transposase IS66 M892_05755 PF13007 Transposase C of IS166 homeodomain M892_05755 PF13817 IS66 C-terminal element M892_05755 PF03050 Transposase IS66 family M892_05785 PF00990 Diguanylate cyclase, GGDEF domain M892_05785 PF08448 PAS fold M892_05795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M892_05800 PF09619 Type III secretion system lipoprotein chaperone (YscW) M892_05810 PF01037 Lrp/AsnC ligand binding domain M892_05810 PF13404 AsnC-type helix-turn-helix domain M892_05815 PF00291 Pyridoxal-phosphate dependent enzyme M892_05830 PF00873 AcrB/AcrD/AcrF family M892_05835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_05835 PF00529 HlyD membrane-fusion protein of T1SS M892_05860 PF07690 Major Facilitator Superfamily M892_05865 PF03601 Conserved hypothetical protein 698 M892_05880 PF13193 AMP-binding enzyme C-terminal domain M892_05880 PF00501 AMP-binding enzyme M892_05885 PF13378 Enolase C-terminal domain-like M892_05890 PF00378 Enoyl-CoA hydratase/isomerase M892_05895 PF12697 Alpha/beta hydrolase family M892_05900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M892_05900 PF16582 Middle domain of thiamine pyrophosphate M892_05900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M892_05905 PF00425 chorismate binding enzyme M892_05910 PF00155 Aminotransferase class I and II M892_05920 PF01966 HD domain M892_05920 PF13286 Phosphohydrolase-associated domain M892_05940 PF13145 PPIC-type PPIASE domain M892_05945 PF00216 Bacterial DNA-binding protein M892_05950 PF05362 Lon protease (S16) C-terminal proteolytic domain M892_05950 PF02190 ATP-dependent protease La (LON) substrate-binding domain M892_05950 PF00004 ATPase family associated with various cellular activities (AAA) M892_05955 PF07724 AAA domain (Cdc48 subfamily) M892_05955 PF06689 ClpX C4-type zinc finger M892_05955 PF10431 C-terminal, D2-small domain, of ClpB protein M892_05960 PF05698 Bacterial trigger factor protein (TF) C-terminus M892_05960 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M892_05960 PF05697 Bacterial trigger factor protein (TF) M892_05965 PF00512 His Kinase A (phospho-acceptor) domain M892_05965 PF02743 Cache domain M892_05965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_05980 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M892_05985 PF03480 Bacterial extracellular solute-binding protein, family 7 M892_05990 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M892_06005 PF02386 Cation transport protein M892_06010 PF02080 TrkA-C domain M892_06010 PF02254 TrkA-N domain M892_06015 PF00270 DEAD/DEAH box helicase M892_06015 PF00271 Helicase conserved C-terminal domain M892_06025 PF07715 TonB-dependent Receptor Plug Domain M892_06025 PF00593 TonB dependent receptor M892_06030 PF01648 4'-phosphopantetheinyl transferase superfamily M892_06030 PF17837 4'-phosphopantetheinyl transferase N-terminal domain M892_06040 PF00975 Thioesterase domain M892_06040 PF00550 Phosphopantetheine attachment site M892_06040 PF00550 Phosphopantetheine attachment site M892_06040 PF00668 Condensation domain M892_06040 PF00975 Thioesterase domain M892_06040 PF00501 AMP-binding enzyme M892_06040 PF00668 Condensation domain M892_06040 PF13193 AMP-binding enzyme C-terminal domain M892_06040 PF13193 AMP-binding enzyme C-terminal domain M892_06040 PF00501 AMP-binding enzyme M892_06045 PF00857 Isochorismatase family M892_06045 PF00550 Phosphopantetheine attachment site M892_06050 PF13193 AMP-binding enzyme C-terminal domain M892_06050 PF00501 AMP-binding enzyme M892_06055 PF00425 chorismate binding enzyme M892_06090 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M892_06090 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M892_06095 PF07662 Na+ dependent nucleoside transporter C-terminus M892_06095 PF07670 Nucleoside recognition M892_06095 PF01773 Na+ dependent nucleoside transporter N-terminus M892_06100 PF03466 LysR substrate binding domain M892_06100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_06105 PF13406 Transglycosylase SLT domain M892_06110 PF05166 YcgL domain M892_06115 PF05209 Septum formation inhibitor MinC, N-terminal domain M892_06115 PF03775 Septum formation inhibitor MinC, C-terminal domain M892_06120 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M892_06125 PF03776 Septum formation topological specificity factor MinE M892_06135 PF00570 HRDC domain M892_06135 PF01612 3'-5' exonuclease M892_06140 PF00501 AMP-binding enzyme M892_06140 PF13193 AMP-binding enzyme C-terminal domain M892_06145 PF12697 Alpha/beta hydrolase family M892_06150 PF03843 Outer membrane lipoprotein Slp family M892_06160 PF00814 Glycoprotease family M892_06165 PF04851 Type III restriction enzyme, res subunit M892_06165 PF13307 Helicase C-terminal domain M892_06170 PF01842 ACT domain M892_06170 PF00551 Formyl transferase M892_06180 PF06185 YecM protein M892_06185 PF03485 Arginyl tRNA synthetase N terminal domain M892_06185 PF00750 tRNA synthetases class I (R) M892_06185 PF05746 DALR anticodon binding domain M892_06205 PF07670 Nucleoside recognition M892_06205 PF17910 FeoB cytosolic helical domain M892_06205 PF02421 Ferrous iron transport protein B M892_06205 PF07664 Ferrous iron transport protein B C terminus M892_06210 PF04023 FeoA domain M892_06215 PF12833 Helix-turn-helix domain M892_06215 PF02311 AraC-like ligand binding domain M892_06220 PF01297 Zinc-uptake complex component A periplasmic M892_06225 PF00005 ABC transporter M892_06230 PF00950 ABC 3 transport family M892_06235 PF00549 CoA-ligase M892_06235 PF02629 CoA binding domain M892_06240 PF08442 ATP-grasp domain M892_06240 PF00549 CoA-ligase M892_06245 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M892_06245 PF02817 e3 binding domain M892_06245 PF00364 Biotin-requiring enzyme M892_06250 PF16078 2-oxoglutarate dehydrogenase N-terminus M892_06250 PF02779 Transketolase, pyrimidine binding domain M892_06250 PF00676 Dehydrogenase E1 component M892_06250 PF16870 2-oxoglutarate dehydrogenase C-terminal M892_06255 PF13085 2Fe-2S iron-sulfur cluster binding domain M892_06260 PF02910 Fumarate reductase flavoprotein C-term M892_06260 PF00890 FAD binding domain M892_06265 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M892_06270 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M892_06275 PF00285 Citrate synthase, C-terminal domain M892_06280 PF02371 Transposase IS116/IS110/IS902 family M892_06280 PF01548 Transposase M892_06285 PF01784 NIF3 (NGG1p interacting factor 3) M892_06295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M892_06295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M892_06295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M892_06295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M892_06305 PF00561 alpha/beta hydrolase fold M892_06315 PF00258 Flavodoxin M892_06325 PF01475 Ferric uptake regulator family M892_06330 PF08334 Type II secretion system (T2SS), protein G M892_06330 PF07963 Prokaryotic N-terminal methylation motif M892_06335 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M892_06335 PF00749 tRNA synthetases class I (E and Q), catalytic domain M892_06340 PF00367 phosphotransferase system, EIIB M892_06340 PF02378 Phosphotransferase system, EIIC M892_06340 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M892_06345 PF01979 Amidohydrolase family M892_06350 PF01047 MarR family M892_06350 PF00480 ROK family M892_06355 PF02254 TrkA-N domain M892_06355 PF00999 Sodium/hydrogen exchanger family M892_06360 PF00733 Asparagine synthase M892_06360 PF13537 Glutamine amidotransferase domain M892_06370 PF00854 POT family M892_06375 PF00762 Ferrochelatase M892_06380 PF05191 Adenylate kinase, active site lid M892_06385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_06385 PF00183 Hsp90 protein M892_06390 PF00486 Transcriptional regulatory protein, C terminal M892_06395 PF17323 Trans-membrane regulatory protein ToxS M892_06410 PF12850 Calcineurin-like phosphoesterase superfamily domain M892_06420 PF01370 NAD dependent epimerase/dehydratase family M892_06420 PF08338 Domain of unknown function (DUF1731) M892_06425 PF00106 short chain dehydrogenase M892_06430 PF00085 Thioredoxin M892_06435 PF16200 C-terminal region of band_7 M892_06435 PF01145 SPFH domain / Band 7 family M892_06475 PF04354 ZipA, C-terminal FtsZ-binding domain M892_06485 PF00291 Pyridoxal-phosphate dependent enzyme M892_06490 PF00381 PTS HPr component phosphorylation site M892_06495 PF02896 PEP-utilising enzyme, TIM barrel domain M892_06495 PF05524 PEP-utilising enzyme, N-terminal M892_06495 PF00391 PEP-utilising enzyme, mobile domain M892_06500 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M892_06505 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_06510 PF13358 DDE superfamily endonuclease M892_06520 PF00700 Bacterial flagellin C-terminal helical region M892_06520 PF00669 Bacterial flagellin N-terminal helical region M892_06520 PF07196 Flagellin hook IN motif M892_06525 PF00700 Bacterial flagellin C-terminal helical region M892_06525 PF00669 Bacterial flagellin N-terminal helical region M892_06525 PF07196 Flagellin hook IN motif M892_06530 PF07196 Flagellin hook IN motif M892_06530 PF00700 Bacterial flagellin C-terminal helical region M892_06530 PF00669 Bacterial flagellin N-terminal helical region M892_06540 PF07196 Flagellin hook IN motif M892_06540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_06545 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_06550 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M892_06550 PF10135 Rod binding protein M892_06555 PF02119 Flagellar P-ring protein M892_06560 PF02107 Flagellar L-ring protein M892_06565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_06565 PF00460 Flagella basal body rod protein M892_06570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_06570 PF00460 Flagella basal body rod protein M892_06575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_06575 PF07559 Flagellar basal body protein FlaE M892_06575 PF00460 Flagella basal body rod protein M892_06580 PF13860 FlgD Ig-like domain M892_06580 PF13861 FlgD Tudor-like domain M892_06580 PF03963 Flagellar hook capping protein - N-terminal region M892_06585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_06585 PF00460 Flagella basal body rod protein M892_06590 PF00460 Flagella basal body rod protein M892_06595 PF03705 CheR methyltransferase, all-alpha domain M892_06595 PF01739 CheR methyltransferase, SAM binding domain M892_06600 PF01584 CheW-like domain M892_06600 PF00072 Response regulator receiver domain M892_06645 PF01389 OmpA-like transmembrane domain M892_06645 PF00691 OmpA family M892_06655 PF00749 tRNA synthetases class I (E and Q), catalytic domain M892_06660 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M892_06665 PF13609 Gram-negative porin M892_06670 PF00403 Heavy-metal-associated domain M892_06685 PF02838 Glycosyl hydrolase family 20, domain 2 M892_06685 PF00728 Glycosyl hydrolase family 20, catalytic domain M892_06685 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M892_06685 PF03173 Putative carbohydrate binding domain M892_06720 PF01713 Smr domain M892_06725 PF01479 S4 domain M892_06725 PF00849 RNA pseudouridylate synthase M892_06730 PF04073 Aminoacyl-tRNA editing domain M892_06735 PF02872 5'-nucleotidase, C-terminal domain M892_06735 PF00149 Calcineurin-like phosphoesterase M892_06740 PF00793 DAHP synthetase I family M892_06745 PF13369 Transglutaminase-like superfamily M892_06750 PF04247 Invasion gene expression up-regulator, SirB M892_06755 PF17827 PrmC N-terminal domain M892_06755 PF13847 Methyltransferase domain M892_06760 PF00472 RF-1 domain M892_06760 PF03462 PCRF domain M892_06765 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M892_06765 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M892_06765 PF01488 Shikimate / quinate 5-dehydrogenase M892_06770 PF03550 Outer membrane lipoprotein LolB M892_06775 PF08544 GHMP kinases C terminal M892_06775 PF00288 GHMP kinases N terminal domain M892_06780 PF14572 Phosphoribosyl synthetase-associated domain M892_06780 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M892_06785 PF01195 Peptidyl-tRNA hydrolase M892_06790 PF01926 50S ribosome-binding GTPase M892_06790 PF06071 Protein of unknown function (DUF933) M892_06815 PF01494 FAD binding domain M892_06820 PF01938 TRAM domain M892_06820 PF00919 Uncharacterized protein family UPF0004 M892_06820 PF04055 Radical SAM superfamily M892_06825 PF02562 PhoH-like protein M892_06830 PF02130 Uncharacterized protein family UPF0054 M892_06835 PF03471 Transporter associated domain M892_06835 PF00571 CBS domain M892_06840 PF00795 Carbon-nitrogen hydrolase M892_06850 PF07295 Zinc-ribbon containing domain M892_06855 PF08264 Anticodon-binding domain of tRNA M892_06855 PF13603 Leucyl-tRNA synthetase, Domain 2 M892_06855 PF00133 tRNA synthetases class I (I, L, M and V) M892_06860 PF04390 Lipopolysaccharide-assembly M892_06865 PF06144 DNA polymerase III, delta subunit M892_06865 PF14840 Processivity clamp loader gamma complex DNA pol III C-term M892_06875 PF02590 Predicted SPOUT methyltransferase M892_06880 PF03717 Penicillin-binding Protein dimerisation domain M892_06880 PF00905 Penicillin binding protein transpeptidase domain M892_06885 PF01098 Cell cycle protein M892_06890 PF03330 Lytic transglycolase M892_06890 PF05036 Sporulation related domain M892_06895 PF00768 D-alanyl-D-alanine carboxypeptidase M892_06895 PF07943 Penicillin-binding protein 5, C-terminal domain M892_06900 PF04359 Protein of unknown function (DUF493) M892_06905 PF04055 Radical SAM superfamily M892_06905 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M892_06910 PF01548 Transposase M892_06910 PF02371 Transposase IS116/IS110/IS902 family M892_06915 PF01548 Transposase M892_06915 PF02371 Transposase IS116/IS110/IS902 family M892_06920 PF00464 Serine hydroxymethyltransferase M892_06925 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M892_06925 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M892_06930 PF16657 Maltogenic Amylase, C-terminal domain M892_06930 PF00128 Alpha amylase, catalytic domain M892_06935 PF02378 Phosphotransferase system, EIIC M892_06935 PF00367 phosphotransferase system, EIIB M892_06940 PF00356 Bacterial regulatory proteins, lacI family M892_06950 PF09383 NIL domain M892_06950 PF00005 ABC transporter M892_06955 PF00528 Binding-protein-dependent transport system inner membrane component M892_06960 PF03180 NLPA lipoprotein M892_06980 PF00149 Calcineurin-like phosphoesterase M892_06980 PF02872 5'-nucleotidase, C-terminal domain M892_06985 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) M892_06990 PF07348 Syd protein (SUKH-2) M892_06995 PF14489 QueF-like protein M892_06995 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M892_07005 PF00072 Response regulator receiver domain M892_07005 PF00990 Diguanylate cyclase, GGDEF domain M892_07010 PF03641 Possible lysine decarboxylase M892_07010 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M892_07010 PF11892 Domain of unknown function (DUF3412) M892_07015 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M892_07015 PF01367 5'-3' exonuclease, C-terminal SAM fold M892_07020 PF18125 RlmM ferredoxin-like domain M892_07020 PF01728 FtsJ-like methyltransferase M892_07025 PF04241 Protein of unknown function (DUF423) M892_07035 PF03466 LysR substrate binding domain M892_07035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_07040 PF13007 Transposase C of IS166 homeodomain M892_07040 PF13005 zinc-finger binding domain of transposase IS66 M892_07040 PF03050 Transposase IS66 family M892_07040 PF13817 IS66 C-terminal element M892_07055 PF02568 Thiamine biosynthesis protein (ThiI) M892_07055 PF02926 THUMP domain M892_07060 PF00691 OmpA family M892_07060 PF13677 Membrane MotB of proton-channel complex MotA/MotB M892_07065 PF01618 MotA/TolQ/ExbB proton channel family M892_07070 PF02609 Exonuclease VII small subunit M892_07075 PF00348 Polyprenyl synthetase M892_07080 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M892_07080 PF02779 Transketolase, pyrimidine binding domain M892_07080 PF02780 Transketolase, C-terminal domain M892_07085 PF04608 Phosphatidylglycerophosphatase A M892_07090 PF02769 AIR synthase related protein, C-terminal domain M892_07090 PF00586 AIR synthase related protein, N-terminal domain M892_07095 PF01029 NusB family M892_07100 PF00885 6,7-dimethyl-8-ribityllumazine synthase M892_07105 PF00925 GTP cyclohydrolase II M892_07105 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M892_07110 PF00677 Lumazine binding domain M892_07115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M892_07115 PF01872 RibD C-terminal domain M892_07120 PF03477 ATP cone domain M892_07125 PF00171 Aldehyde dehydrogenase family M892_07130 PF00696 Amino acid kinase family M892_07130 PF01472 PUA domain M892_07135 PF07417 Sigma factor-binding transcriptional regulator Crl M892_07145 PF00156 Phosphoribosyl transferase domain M892_07150 PF00860 Permease family M892_07160 PF01546 Peptidase family M20/M25/M40 M892_07160 PF07687 Peptidase dimerisation domain M892_07165 PF13006 Insertion element 4 transposase N-terminal M892_07165 PF01609 Transposase DDE domain M892_07185 PF13340 Putative transposase of IS4/5 family (DUF4096) M892_07195 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M892_07195 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M892_07195 PF02769 AIR synthase related protein, C-terminal domain M892_07200 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_07200 PF01464 Transglycosylase SLT domain M892_07225 PF14437 MafB19-like deaminase M892_07235 PF03806 AbgT putative transporter family M892_07260 PF00114 Pilin (bacterial filament) M892_07260 PF07963 Prokaryotic N-terminal methylation motif M892_07265 PF00226 DnaJ domain M892_07265 PF01556 DnaJ C terminal domain M892_07265 PF00684 DnaJ central domain M892_07270 PF00012 Hsp70 protein M892_07275 PF00375 Sodium:dicarboxylate symporter family M892_07280 PF01025 GrpE M892_07285 PF01513 ATP-NAD kinase M892_07290 PF02463 RecF/RecN/SMC N terminal domain M892_07295 PF00583 Acetyltransferase (GNAT) family M892_07300 PF04355 SmpA / OmlA family M892_07305 PF01609 Transposase DDE domain M892_07305 PF02281 Transposase Tn5 dimerisation domain M892_07305 PF14706 Transposase DNA-binding M892_07310 PF14706 Transposase DNA-binding M892_07310 PF01609 Transposase DDE domain M892_07310 PF02281 Transposase Tn5 dimerisation domain M892_07315 PF03658 RnfH family Ubiquitin M892_07320 PF03364 Polyketide cyclase / dehydrase and lipid transport M892_07325 PF01668 SmpB protein M892_07330 PF13356 Arm DNA-binding domain M892_07330 PF00589 Phage integrase family M892_07345 PF13006 Insertion element 4 transposase N-terminal M892_07345 PF01609 Transposase DDE domain M892_07355 PF12161 HsdM N-terminal domain M892_07355 PF02384 N-6 DNA Methylase M892_07395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_07395 PF03466 LysR substrate binding domain M892_07400 PF12805 FUSC-like inner membrane protein yccS M892_07415 PF13007 Transposase C of IS166 homeodomain M892_07415 PF03050 Transposase IS66 family M892_07415 PF13005 zinc-finger binding domain of transposase IS66 M892_07415 PF13817 IS66 C-terminal element M892_07445 PF00202 Aminotransferase class-III M892_07450 PF00202 Aminotransferase class-III M892_07470 PF13276 HTH-like domain M892_07470 PF00665 Integrase core domain M892_07470 PF13333 Integrase core domain M892_07480 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_07485 PF13358 DDE superfamily endonuclease M892_07490 PF00924 Mechanosensitive ion channel M892_07495 PF05036 Sporulation related domain M892_07495 PF03330 Lytic transglycolase M892_07500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_07500 PF03466 LysR substrate binding domain M892_07505 PF01235 Sodium:alanine symporter family M892_07510 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_07515 PF01184 GPR1/FUN34/yaaH family M892_07520 PF06483 Chitinase C M892_07520 PF00704 Glycosyl hydrolases family 18 M892_07525 PF03553 Na+/H+ antiporter family M892_07530 PF03553 Na+/H+ antiporter family M892_07535 PF00117 Glutamine amidotransferase class-I M892_07535 PF00958 GMP synthase C terminal domain M892_07535 PF02540 NAD synthase M892_07540 PF00478 IMP dehydrogenase / GMP reductase domain M892_07540 PF00571 CBS domain M892_07545 PF13742 OB-fold nucleic acid binding domain M892_07545 PF02601 Exonuclease VII, large subunit M892_07555 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M892_07555 PF01926 50S ribosome-binding GTPase M892_07560 PF13360 PQQ-like domain M892_07565 PF09976 Tetratricopeptide repeat-like domain M892_07570 PF13393 Histidyl-tRNA synthetase M892_07570 PF03129 Anticodon binding domain M892_07575 PF04551 GcpE protein M892_07580 PF13464 Domain of unknown function (DUF4115) M892_07585 PF04055 Radical SAM superfamily M892_07590 PF00334 Nucleoside diphosphate kinase M892_07595 PF12404 Peptidase M892_07595 PF00883 Cytosol aminopeptidase family, catalytic domain M892_07600 PF01609 Transposase DDE domain M892_07600 PF13006 Insertion element 4 transposase N-terminal M892_07605 PF04384 Iron-sulphur cluster assembly M892_07610 PF00111 2Fe-2S iron-sulfur cluster binding domain M892_07615 PF00012 Hsp70 protein M892_07620 PF00226 DnaJ domain M892_07620 PF07743 HSCB C-terminal oligomerisation domain M892_07625 PF01521 Iron-sulphur cluster biosynthesis M892_07630 PF01592 NifU-like N terminal domain M892_07635 PF00266 Aminotransferase class-V M892_07640 PF02082 Transcriptional regulator M892_07645 PF00588 SpoU rRNA Methylase family M892_07660 PF07549 SecD/SecF GG Motif M892_07660 PF02355 Protein export membrane protein M892_07665 PF02355 Protein export membrane protein M892_07665 PF13721 SecD export protein N-terminal TM region M892_07665 PF07549 SecD/SecF GG Motif M892_07670 PF02699 Preprotein translocase subunit M892_07675 PF01702 Queuine tRNA-ribosyltransferase M892_07680 PF02547 Queuosine biosynthesis protein M892_07690 PF00571 CBS domain M892_07695 PF00463 Isocitrate lyase family M892_07700 PF01274 Malate synthase M892_07705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_07705 PF03466 LysR substrate binding domain M892_07710 PF00578 AhpC/TSA family M892_07710 PF10417 C-terminal domain of 1-Cys peroxiredoxin M892_07715 PF03932 CutC family M892_07720 PF03976 Polyphosphate kinase 2 (PPK2) M892_07725 PF13358 DDE superfamily endonuclease M892_07735 PF01895 PhoU domain M892_07740 PF00005 ABC transporter M892_07745 PF00528 Binding-protein-dependent transport system inner membrane component M892_07750 PF00528 Binding-protein-dependent transport system inner membrane component M892_07755 PF13089 Polyphosphate kinase N-terminal domain M892_07755 PF13090 Polyphosphate kinase C-terminal domain 2 M892_07755 PF02503 Polyphosphate kinase middle domain M892_07755 PF17941 Polyphosphate kinase C-terminal domain 1 M892_07760 PF02541 Ppx/GppA phosphatase family M892_07765 PF12849 PBP superfamily domain M892_07770 PF00989 PAS fold M892_07770 PF00512 His Kinase A (phospho-acceptor) domain M892_07770 PF11808 Phosphate regulon sensor protein PhoR M892_07770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_07775 PF00072 Response regulator receiver domain M892_07775 PF00486 Transcriptional regulatory protein, C terminal M892_07780 PF04381 Putative exonuclease, RdgC M892_07790 PF00037 4Fe-4S binding domain M892_07800 PF03411 Penicillin-insensitive murein endopeptidase M892_07815 PF13358 DDE superfamily endonuclease M892_07825 PF13358 DDE superfamily endonuclease M892_07875 PF00004 ATPase family associated with various cellular activities (AAA) M892_07875 PF07724 AAA domain (Cdc48 subfamily) M892_07875 PF17871 AAA lid domain M892_07875 PF02861 Clp amino terminal domain, pathogenicity island component M892_07875 PF10431 C-terminal, D2-small domain, of ClpB protein M892_07885 PF01479 S4 domain M892_07885 PF00849 RNA pseudouridylate synthase M892_07890 PF13525 Outer membrane lipoprotein M892_07895 PF01464 Transglycosylase SLT domain M892_07900 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M892_07905 PF01817 Chorismate mutase type II M892_07905 PF00800 Prephenate dehydratase M892_07910 PF01931 Protein of unknown function DUF84 M892_07915 PF01371 Trp repressor protein M892_07920 PF14718 Soluble lytic murein transglycosylase L domain M892_07920 PF01464 Transglycosylase SLT domain M892_07925 PF00005 ABC transporter M892_07925 PF12848 ABC transporter M892_07930 PF07238 PilZ domain M892_07935 PF04225 Opacity-associated protein A LysM-like domain M892_07935 PF01551 Peptidase family M23 M892_07940 PF02153 Prephenate dehydrogenase M892_07940 PF01817 Chorismate mutase type II M892_07945 PF00793 DAHP synthetase I family M892_07950 PF00933 Glycosyl hydrolase family 3 N terminal domain M892_07955 PF03702 Anhydro-N-acetylmuramic acid kinase M892_07960 PF01380 SIS domain M892_07975 PF02554 Carbon starvation protein CstA M892_07980 PF07694 5TMR of 5TMR-LYT M892_07980 PF06580 Histidine kinase M892_07985 PF04397 LytTr DNA-binding domain M892_07985 PF00072 Response regulator receiver domain M892_07990 PF02401 LytB protein M892_07995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M892_08000 PF01252 Signal peptidase (SPase) II M892_08005 PF00133 tRNA synthetases class I (I, L, M and V) M892_08005 PF08264 Anticodon-binding domain of tRNA M892_08005 PF06827 Zinc finger found in FPG and IleRS M892_08010 PF01687 Riboflavin kinase M892_08010 PF06574 FAD synthetase M892_08015 PF03023 Lipid II flippase MurJ M892_08020 PF01649 Ribosomal protein S20 M892_08025 PF01022 Bacterial regulatory protein, arsR family M892_08030 PF03466 LysR substrate binding domain M892_08030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_08035 PF02690 Na+/Pi-cotransporter M892_08040 PF02371 Transposase IS116/IS110/IS902 family M892_08040 PF01548 Transposase M892_08050 PF00303 Thymidylate synthase M892_08055 PF01790 Prolipoprotein diacylglyceryl transferase M892_08060 PF01925 Sulfite exporter TauE/SafE M892_08065 PF01590 GAF domain M892_08065 PF02896 PEP-utilising enzyme, TIM barrel domain M892_08065 PF05524 PEP-utilising enzyme, N-terminal M892_08065 PF00391 PEP-utilising enzyme, mobile domain M892_08070 PF00293 NUDIX domain M892_08075 PF02976 DNA mismatch repair enzyme MutH M892_08085 PF00248 Aldo/keto reductase family M892_08100 PF02954 Bacterial regulatory protein, Fis family M892_08100 PF00072 Response regulator receiver domain M892_08100 PF00158 Sigma-54 interaction domain M892_08105 PF00152 tRNA synthetases class II (D, K and N) M892_08105 PF01336 OB-fold nucleic acid binding domain M892_08110 PF03462 PCRF domain M892_08110 PF00472 RF-1 domain M892_08115 PF17768 RecJ OB domain M892_08115 PF02272 DHHA1 domain M892_08115 PF01368 DHH family M892_08120 PF10411 Disulfide bond isomerase protein N-terminus M892_08120 PF13098 Thioredoxin-like domain M892_08125 PF00589 Phage integrase family M892_08125 PF02899 Phage integrase, N-terminal SAM-like domain M892_08130 PF00258 Flavodoxin M892_08135 PF05525 Branched-chain amino acid transport protein M892_08140 PF05175 Methyltransferase small domain M892_08145 PF00271 Helicase conserved C-terminal domain M892_08145 PF00270 DEAD/DEAH box helicase M892_08155 PF14706 Transposase DNA-binding M892_08155 PF02281 Transposase Tn5 dimerisation domain M892_08155 PF01609 Transposase DDE domain M892_08160 PF03883 Peroxide stress protein YaaA M892_08165 PF01235 Sodium:alanine symporter family M892_08180 PF03167 Uracil DNA glycosylase superfamily M892_08185 PF01261 Xylose isomerase-like TIM barrel M892_08190 PF01228 Glycine radical M892_08200 PF14821 Threonine synthase N terminus M892_08200 PF00291 Pyridoxal-phosphate dependent enzyme M892_08205 PF08544 GHMP kinases C terminal M892_08205 PF00288 GHMP kinases N terminal domain M892_08210 PF01842 ACT domain M892_08210 PF00742 Homoserine dehydrogenase M892_08210 PF13840 ACT domain M892_08210 PF00696 Amino acid kinase family M892_08210 PF03447 Homoserine dehydrogenase, NAD binding domain M892_08220 PF03737 Aldolase/RraA M892_08230 PF01609 Transposase DDE domain M892_08230 PF13006 Insertion element 4 transposase N-terminal M892_08235 PF00072 Response regulator receiver domain M892_08235 PF00486 Transcriptional regulatory protein, C terminal M892_08245 PF00072 Response regulator receiver domain M892_08245 PF00989 PAS fold M892_08245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_08245 PF00512 His Kinase A (phospho-acceptor) domain M892_08245 PF18415 Histidine kinase receptor ArcB trans-membrane domain M892_08245 PF01627 Hpt domain M892_08250 PF01590 GAF domain M892_08250 PF00563 EAL domain M892_08250 PF00360 Phytochrome region M892_08250 PF00990 Diguanylate cyclase, GGDEF domain M892_08255 PF16199 Radical_SAM C-terminal domain M892_08255 PF04055 Radical SAM superfamily M892_08260 PF01493 GXGXG motif M892_08260 PF01645 Conserved region in glutamate synthase M892_08260 PF04898 Glutamate synthase central domain M892_08260 PF00310 Glutamine amidotransferases class-II M892_08265 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M892_08265 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_08270 PF04898 Glutamate synthase central domain M892_08270 PF01645 Conserved region in glutamate synthase M892_08270 PF01493 GXGXG motif M892_08270 PF00310 Glutamine amidotransferases class-II M892_08275 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M892_08275 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_08285 PF01048 Phosphorylase superfamily M892_08295 PF01497 Periplasmic binding protein M892_08300 PF03458 UPF0126 domain M892_08305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_08305 PF03466 LysR substrate binding domain M892_08310 PF01925 Sulfite exporter TauE/SafE M892_08325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M892_08325 PF02142 MGS-like domain M892_08325 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M892_08330 PF00117 Glutamine amidotransferase class-I M892_08330 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M892_08335 PF05173 Dihydrodipicolinate reductase, C-terminus M892_08335 PF01113 Dihydrodipicolinate reductase, N-terminus M892_08340 PF00293 NUDIX domain M892_08345 PF07516 SecA Wing and Scaffold domain M892_08345 PF01043 SecA preprotein cross-linking domain M892_08345 PF02810 SEC-C motif M892_08345 PF07517 SecA DEAD-like domain M892_08355 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M892_08360 PF00091 Tubulin/FtsZ family, GTPase domain M892_08360 PF12327 FtsZ family, C-terminal domain M892_08365 PF02491 SHS2 domain inserted in FTSA M892_08370 PF03799 Cell division protein FtsQ M892_08370 PF08478 POTRA domain, FtsQ-type M892_08375 PF01225 Mur ligase family, catalytic domain M892_08375 PF02875 Mur ligase family, glutamate ligase domain M892_08375 PF08245 Mur ligase middle domain M892_08380 PF04101 Glycosyltransferase family 28 C-terminal domain M892_08380 PF03033 Glycosyltransferase family 28 N-terminal domain M892_08385 PF01098 Cell cycle protein M892_08390 PF08245 Mur ligase middle domain M892_08390 PF02875 Mur ligase family, glutamate ligase domain M892_08395 PF00953 Glycosyl transferase family 4 M892_08395 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M892_08400 PF08245 Mur ligase middle domain M892_08400 PF02875 Mur ligase family, glutamate ligase domain M892_08400 PF01225 Mur ligase family, catalytic domain M892_08405 PF02875 Mur ligase family, glutamate ligase domain M892_08405 PF01225 Mur ligase family, catalytic domain M892_08405 PF08245 Mur ligase middle domain M892_08410 PF03717 Penicillin-binding Protein dimerisation domain M892_08410 PF00905 Penicillin binding protein transpeptidase domain M892_08415 PF04999 Cell division protein FtsL M892_08420 PF01795 MraW methylase family M892_08425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M892_08430 PF04348 LppC putative lipoprotein M892_08435 PF02021 Uncharacterised protein family UPF0102 M892_08440 PF13580 SIS domain M892_08445 PF04972 BON domain M892_08450 PF04386 Stringent starvation protein B M892_08455 PF02798 Glutathione S-transferase, N-terminal domain M892_08455 PF00043 Glutathione S-transferase, C-terminal domain M892_08460 PF02167 Cytochrome C1 family M892_08465 PF00032 Cytochrome b(C-terminal)/b6/petD M892_08465 PF00033 Cytochrome b/b6/petB M892_08470 PF00355 Rieske [2Fe-2S] domain M892_08470 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal M892_08475 PF00380 Ribosomal protein S9/S16 M892_08480 PF00572 Ribosomal protein L13 M892_08485 PF03969 AFG1-like ATPase M892_08490 PF06295 Protein of unknown function (DUF1043) M892_08495 PF00595 PDZ domain M892_08500 PF13180 PDZ domain M892_08505 PF00521 DNA gyrase/topoisomerase IV, subunit A M892_08505 PF03989 DNA gyrase C-terminal domain, beta-propeller M892_08510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_08510 PF00204 DNA gyrase B M892_08510 PF01751 Toprim domain M892_08510 PF00986 DNA gyrase B subunit, carboxyl terminus M892_08515 PF05728 Uncharacterised protein family (UPF0227) M892_08520 PF00149 Calcineurin-like phosphoesterase M892_08525 PF06853 Protein of unknown function (DUF1249) M892_08530 PF00293 NUDIX domain M892_08535 PF02321 Outer membrane efflux protein M892_08540 PF01467 Cytidylyltransferase-like M892_08540 PF00294 pfkB family carbohydrate kinase M892_08545 PF03710 Glutamate-ammonia ligase adenylyltransferase M892_08545 PF08335 GlnD PII-uridylyltransferase M892_08550 PF00672 HAMP domain M892_08550 PF02743 Cache domain M892_08550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_08555 PF07885 Ion channel M892_08560 PF01928 CYTH domain M892_08565 PF01865 Protein of unknown function DUF47 M892_08570 PF01384 Phosphate transporter family M892_08575 PF08239 Bacterial SH3 domain M892_08585 PF01471 Putative peptidoglycan binding domain M892_08585 PF13401 AAA domain M892_08590 PF12627 Probable RNA and SrmB- binding site of polymerase A M892_08590 PF01743 Poly A polymerase head domain M892_08590 PF01966 HD domain M892_08595 PF02673 Bacitracin resistance protein BacA M892_08600 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M892_08605 PF02152 Dihydroneopterin aldolase M892_08610 PF02660 Glycerol-3-phosphate acyltransferase M892_08615 PF00561 alpha/beta hydrolase fold M892_08620 PF00814 Glycoprotease family M892_08625 PF01165 Ribosomal protein S21 M892_08630 PF09424 Yqey-like protein M892_08635 PF08275 DNA primase catalytic core, N-terminal domain M892_08635 PF01807 CHC2 zinc finger M892_08635 PF10410 DnaB-helicase binding domain of primase M892_08635 PF08278 DNA primase DnaG DnaB-binding M892_08640 PF04546 Sigma-70, non-essential region M892_08640 PF03979 Sigma-70 factor, region 1.1 M892_08640 PF00140 Sigma-70 factor, region 1.2 M892_08640 PF04542 Sigma-70 region 2 M892_08640 PF04539 Sigma-70 region 3 M892_08640 PF04545 Sigma-70, region 4 M892_08660 PF13005 zinc-finger binding domain of transposase IS66 M892_08660 PF13007 Transposase C of IS166 homeodomain M892_08660 PF13817 IS66 C-terminal element M892_08660 PF03050 Transposase IS66 family M892_08685 PF13356 Arm DNA-binding domain M892_08685 PF14659 Phage integrase, N-terminal SAM-like domain M892_08685 PF00589 Phage integrase family M892_08710 PF02378 Phosphotransferase system, EIIC M892_08710 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M892_08710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M892_08715 PF08125 Mannitol dehydrogenase C-terminal domain M892_08715 PF01232 Mannitol dehydrogenase Rossmann domain M892_08720 PF05068 Mannitol repressor M892_08725 PF01380 SIS domain M892_08730 PF08220 DeoR-like helix-turn-helix domain M892_08730 PF00455 DeoR C terminal sensor domain M892_08735 PF00224 Pyruvate kinase, barrel domain M892_08735 PF02887 Pyruvate kinase, alpha/beta domain M892_08745 PF00990 Diguanylate cyclase, GGDEF domain M892_08745 PF17158 Membrane-associated sensor, integral membrane domain M892_08750 PF10369 Small subunit of acetolactate synthase M892_08755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M892_08755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M892_08755 PF00205 Thiamine pyrophosphate enzyme, central domain M892_08760 PF00501 AMP-binding enzyme M892_08765 PF03466 LysR substrate binding domain M892_08765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_08775 PF01569 PAP2 superfamily M892_08785 PF08502 LeuA allosteric (dimerisation) domain M892_08785 PF00682 HMGL-like M892_08790 PF00180 Isocitrate/isopropylmalate dehydrogenase M892_08795 PF00330 Aconitase family (aconitate hydratase) M892_08800 PF00694 Aconitase C-terminal domain M892_08810 PF00226 DnaJ domain M892_08810 PF05099 Tellurite resistance protein TerB M892_08815 PF04453 LPS transport system D M892_08815 PF03968 OstA-like protein M892_08820 PF09312 SurA N-terminal domain M892_08825 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M892_08830 PF00398 Ribosomal RNA adenine dimethylase M892_08835 PF04379 ApaG domain M892_08840 PF00149 Calcineurin-like phosphoesterase M892_08845 PF00186 Dihydrofolate reductase M892_08850 PF12821 Threonine/Serine exporter, ThrE M892_08855 PF06738 Putative threonine/serine exporter M892_08860 PF01926 50S ribosome-binding GTPase M892_08860 PF01018 GTP1/OBG M892_08865 PF01016 Ribosomal L27 protein M892_08870 PF00829 Ribosomal prokaryotic L21 protein M892_08875 PF00348 Polyprenyl synthetase M892_08880 PF01609 Transposase DDE domain M892_08880 PF13006 Insertion element 4 transposase N-terminal M892_08890 PF00056 lactate/malate dehydrogenase, NAD binding domain M892_08890 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M892_08895 PF02863 Arginine repressor, C-terminal domain M892_08895 PF01316 Arginine repressor, DNA binding domain M892_08900 PF16868 NMT1-like family M892_08915 PF00005 ABC transporter M892_08920 PF00528 Binding-protein-dependent transport system inner membrane component M892_08930 PF02441 Flavoprotein M892_08935 PF01225 Mur ligase family, catalytic domain M892_08935 PF08245 Mur ligase middle domain M892_08935 PF02875 Mur ligase family, glutamate ligase domain M892_08940 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M892_08945 PF00719 Inorganic pyrophosphatase M892_08950 PF01609 Transposase DDE domain M892_08950 PF13006 Insertion element 4 transposase N-terminal M892_08960 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like M892_08965 PF04357 TamB, inner membrane protein subunit of TAM complex M892_08970 PF17243 POTRA domain TamA domain 1 M892_08970 PF07244 Surface antigen variable number repeat M892_08970 PF01103 Surface antigen M892_08975 PF01625 Peptide methionine sulfoxide reductase M892_08985 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M892_09000 PF00005 ABC transporter M892_09025 PF02080 TrkA-C domain M892_09025 PF03600 Citrate transporter M892_09030 PF00009 Elongation factor Tu GTP binding domain M892_09035 PF01507 Phosphoadenosine phosphosulfate reductase family M892_09040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M892_09040 PF14824 Sirohaem biosynthesis protein central M892_09040 PF10414 Sirohaem synthase dimerisation region M892_09045 PF00149 Calcineurin-like phosphoesterase M892_09045 PF02872 5'-nucleotidase, C-terminal domain M892_09055 PF00270 DEAD/DEAH box helicase M892_09055 PF03880 DbpA RNA binding domain M892_09055 PF00271 Helicase conserved C-terminal domain M892_09060 PF13673 Acetyltransferase (GNAT) domain M892_09070 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_09080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M892_09080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M892_09090 PF01196 Ribosomal protein L17 M892_09095 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M892_09095 PF01000 RNA polymerase Rpb3/RpoA insert domain M892_09095 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M892_09100 PF01479 S4 domain M892_09100 PF00163 Ribosomal protein S4/S9 N-terminal domain M892_09105 PF00411 Ribosomal protein S11 M892_09110 PF00416 Ribosomal protein S13/S18 M892_09120 PF00344 SecY translocase M892_09125 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M892_09130 PF00327 Ribosomal protein L30p/L7e M892_09135 PF00333 Ribosomal protein S5, N-terminal domain M892_09135 PF03719 Ribosomal protein S5, C-terminal domain M892_09140 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M892_09145 PF00347 Ribosomal protein L6 M892_09150 PF00410 Ribosomal protein S8 M892_09155 PF00253 Ribosomal protein S14p/S29e M892_09160 PF00673 ribosomal L5P family C-terminus M892_09160 PF00281 Ribosomal protein L5 M892_09165 PF00467 KOW motif M892_09165 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M892_09170 PF00238 Ribosomal protein L14p/L23e M892_09175 PF00366 Ribosomal protein S17 M892_09180 PF00831 Ribosomal L29 protein M892_09185 PF00252 Ribosomal protein L16p/L10e M892_09190 PF07650 KH domain M892_09190 PF00189 Ribosomal protein S3, C-terminal domain M892_09195 PF00237 Ribosomal protein L22p/L17e M892_09200 PF00203 Ribosomal protein S19 M892_09205 PF03947 Ribosomal Proteins L2, C-terminal domain M892_09205 PF00181 Ribosomal Proteins L2, RNA binding domain M892_09210 PF00276 Ribosomal protein L23 M892_09215 PF00573 Ribosomal protein L4/L1 family M892_09220 PF00297 Ribosomal protein L3 M892_09225 PF00338 Ribosomal protein S10p/S20e M892_09230 PF01197 Ribosomal protein L31 M892_09235 PF17764 3′ DNA-binding domain (3′BD) M892_09235 PF18074 Primosomal protein N C-terminal domain M892_09235 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M892_09235 PF00270 DEAD/DEAH box helicase M892_09235 PF00271 Helicase conserved C-terminal domain M892_09240 PF00356 Bacterial regulatory proteins, lacI family M892_09250 PF00227 Proteasome subunit M892_09255 PF00004 ATPase family associated with various cellular activities (AAA) M892_09255 PF07724 AAA domain (Cdc48 subfamily) M892_09260 PF01040 UbiA prenyltransferase family M892_09265 PF03737 Aldolase/RraA M892_09270 PF06005 Cell division protein ZapB M892_09275 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M892_09280 PF00455 DeoR C terminal sensor domain M892_09280 PF08220 DeoR-like helix-turn-helix domain M892_09290 PF01548 Transposase M892_09290 PF02371 Transposase IS116/IS110/IS902 family M892_09305 PF00121 Triosephosphate isomerase M892_09315 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M892_09315 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M892_09315 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M892_09320 PF00953 Glycosyl transferase family 4 M892_09325 PF01238 Phosphomannose isomerase type I M892_09330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M892_09330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M892_09330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M892_09330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M892_09335 PF01050 Mannose-6-phosphate isomerase M892_09335 PF00483 Nucleotidyl transferase M892_09350 PF13333 Integrase core domain M892_09350 PF00665 Integrase core domain M892_09350 PF13276 HTH-like domain M892_09395 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M892_09395 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M892_09395 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M892_09400 PF02350 UDP-N-acetylglucosamine 2-epimerase M892_09410 PF02563 Polysaccharide biosynthesis/export protein M892_09410 PF10531 SLBB domain M892_09410 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M892_09435 PF06082 Exopolysaccharide biosynthesis protein YbjH M892_09440 PF01370 NAD dependent epimerase/dehydratase family M892_09445 PF03279 Bacterial lipid A biosynthesis acyltransferase M892_09450 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M892_09455 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M892_09465 PF02348 Cytidylyltransferase M892_09470 PF00483 Nucleotidyl transferase M892_09475 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M892_09475 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M892_09495 PF02350 UDP-N-acetylglucosamine 2-epimerase M892_09500 PF03102 NeuB family M892_09500 PF08666 SAF domain M892_09510 PF02719 Polysaccharide biosynthesis protein M892_09530 PF01219 Prokaryotic diacylglycerol kinase M892_09535 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M892_09540 PF00535 Glycosyl transferase family 2 M892_09545 PF13439 Glycosyltransferase Family 4 M892_09545 PF00534 Glycosyl transferases group 1 M892_09550 PF01467 Cytidylyltransferase-like M892_09555 PF05686 Glycosyl transferase family 90 M892_09560 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M892_09560 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M892_09560 PF06827 Zinc finger found in FPG and IleRS M892_09570 PF00471 Ribosomal protein L33 M892_09575 PF00830 Ribosomal L28 family M892_09580 PF04002 RadC-like JAB domain M892_09585 PF04127 DNA / pantothenate metabolism flavoprotein M892_09585 PF02441 Flavoprotein M892_09590 PF00440 Bacterial regulatory proteins, tetR family M892_09595 PF03279 Bacterial lipid A biosynthesis acyltransferase M892_09605 PF01138 3' exoribonuclease family, domain 1 M892_09605 PF03725 3' exoribonuclease family, domain 2 M892_09610 PF08340 Domain of unknown function (DUF1732) M892_09610 PF03755 YicC-like family, N-terminal region M892_09615 PF00892 EamA-like transporter family M892_09640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M892_09645 PF12911 N-terminal TM domain of oligopeptide transport permease C M892_09645 PF00528 Binding-protein-dependent transport system inner membrane component M892_09650 PF00528 Binding-protein-dependent transport system inner membrane component M892_09655 PF00593 TonB dependent receptor M892_09655 PF07715 TonB-dependent Receptor Plug Domain M892_09670 PF01618 MotA/TolQ/ExbB proton channel family M892_09675 PF02472 Biopolymer transport protein ExbD/TolR M892_09690 PF00625 Guanylate kinase M892_09695 PF04607 Region found in RelA / SpoT proteins M892_09695 PF13291 ACT domain M892_09695 PF02824 TGS domain M892_09700 PF00588 SpoU rRNA Methylase family M892_09700 PF12105 SpoU, rRNA methylase, C-terminal M892_09705 PF17191 RecG wedge domain M892_09705 PF00271 Helicase conserved C-terminal domain M892_09705 PF00270 DEAD/DEAH box helicase M892_09710 PF00326 Prolyl oligopeptidase family M892_09715 PF00860 Permease family M892_09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_09720 PF00512 His Kinase A (phospho-acceptor) domain M892_09720 PF00672 HAMP domain M892_09730 PF00072 Response regulator receiver domain M892_09730 PF00486 Transcriptional regulatory protein, C terminal M892_09735 PF01272 Transcription elongation factor, GreA/GreB, C-term M892_09735 PF03449 Transcription elongation factor, N-terminal M892_09745 PF16921 Tex protein YqgF-like domain M892_09745 PF09371 Tex-like protein N-terminal domain M892_09745 PF00575 S1 RNA binding domain M892_09745 PF17674 HHH domain M892_09755 PF00561 alpha/beta hydrolase fold M892_09760 PF00156 Phosphoribosyl transferase domain M892_09765 PF01106 NifU-like domain M892_09765 PF01521 Iron-sulphur cluster biosynthesis M892_09770 PF00293 NUDIX domain M892_09775 PF00459 Inositol monophosphatase family M892_09780 PF01203 Type II secretion system (T2SS), protein N M892_09785 PF04612 Type II secretion system (T2SS), protein M M892_09790 PF05134 Type II secretion system (T2SS), protein L M892_09790 PF12693 GspL periplasmic domain M892_09795 PF03934 Type II secretion system (T2SS), protein K M892_09800 PF11612 Type II secretion system (T2SS), protein J M892_09800 PF07963 Prokaryotic N-terminal methylation motif M892_09805 PF02501 Type II secretion system (T2SS), protein I M892_09805 PF07963 Prokaryotic N-terminal methylation motif M892_09810 PF12019 Type II transport protein GspH M892_09815 PF07963 Prokaryotic N-terminal methylation motif M892_09815 PF08334 Type II secretion system (T2SS), protein G M892_09820 PF00482 Type II secretion system (T2SS), protein F M892_09825 PF00437 Type II/IV secretion system protein M892_09830 PF03958 Bacterial type II/III secretion system short domain M892_09830 PF00263 Bacterial type II and III secretion system protein M892_09835 PF11356 Type II secretion system protein C M892_09840 PF01479 S4 domain M892_09845 PF01430 Hsp33 protein M892_09850 PF01293 Phosphoenolpyruvate carboxykinase M892_09860 PF00583 Acetyltransferase (GNAT) family M892_09860 PF09500 Putative thioesterase (yiiD_Cterm) M892_09865 PF02580 D-Tyr-tRNA(Tyr) deacylase M892_09870 PF03631 Virulence factor BrkB M892_09895 PF03951 Glutamine synthetase, beta-Grasp domain M892_09895 PF00120 Glutamine synthetase, catalytic domain M892_09905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_09905 PF00512 His Kinase A (phospho-acceptor) domain M892_09905 PF00989 PAS fold M892_09910 PF00158 Sigma-54 interaction domain M892_09910 PF00072 Response regulator receiver domain M892_09910 PF02954 Bacterial regulatory protein, Fis family M892_09915 PF00990 Diguanylate cyclase, GGDEF domain M892_09915 PF03707 Bacterial signalling protein N terminal repeat M892_09915 PF00563 EAL domain M892_09920 PF00962 Adenosine/AMP deaminase M892_09925 PF04055 Radical SAM superfamily M892_09925 PF06969 HemN C-terminal domain M892_09930 PF10675 Protein of unknown function (DUF2489) M892_09935 PF04220 Der GTPase activator (YihI) M892_09950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M892_09955 PF01926 50S ribosome-binding GTPase M892_09960 PF01612 3'-5' exonuclease M892_09960 PF00476 DNA polymerase family A M892_09960 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M892_09960 PF01367 5'-3' exonuclease, C-terminal SAM fold M892_09970 PF00490 Delta-aminolevulinic acid dehydratase M892_09975 PF01026 TatD related DNase M892_09980 PF00902 Sec-independent protein translocase protein (TatC) M892_09985 PF02416 mttA/Hcf106 family M892_09990 PF02416 mttA/Hcf106 family M892_09995 PF03109 ABC1 family M892_10000 PF02036 SCP-2 sterol transfer family M892_10005 PF01209 ubiE/COQ5 methyltransferase family M892_10010 PF02646 RmuC family M892_10020 PF00563 EAL domain M892_10020 PF00990 Diguanylate cyclase, GGDEF domain M892_10020 PF03707 Bacterial signalling protein N terminal repeat M892_10025 PF01609 Transposase DDE domain M892_10025 PF13006 Insertion element 4 transposase N-terminal M892_10030 PF13340 Putative transposase of IS4/5 family (DUF4096) M892_10035 PF12728 Helix-turn-helix domain M892_10035 PF12727 PBP superfamily domain M892_10045 PF04542 Sigma-70 region 2 M892_10045 PF04545 Sigma-70, region 4 M892_10065 PF13737 Transposase DDE domain M892_10070 PF00704 Glycosyl hydrolases family 18 M892_10090 PF03515 Colicin-like bacteriocin tRNase domain M892_10090 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 M892_10095 PF01320 Colicin immunity protein / pyocin immunity protein M892_10100 PF13438 Domain of unknown function (DUF4113) M892_10100 PF00817 impB/mucB/samB family M892_10100 PF11799 impB/mucB/samB family C-terminal domain M892_10105 PF13007 Transposase C of IS166 homeodomain M892_10105 PF13005 zinc-finger binding domain of transposase IS66 M892_10105 PF13817 IS66 C-terminal element M892_10105 PF03050 Transposase IS66 family M892_10135 PF10625 Universal stress protein B (UspB) M892_10140 PF00210 Ferritin-like domain M892_10150 PF00582 Universal stress protein family M892_10155 PF00892 EamA-like transporter family M892_10165 PF04445 Putative SAM-dependent methyltransferase M892_10170 PF00990 Diguanylate cyclase, GGDEF domain M892_10170 PF08448 PAS fold M892_10170 PF00563 EAL domain M892_10175 PF01037 Lrp/AsnC ligand binding domain M892_10180 PF01432 Peptidase family M3 M892_10185 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M892_10195 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_10195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M892_10200 PF00313 'Cold-shock' DNA-binding domain M892_10225 PF01081 KDPG and KHG aldolase M892_10230 PF02447 GntP family permease M892_10235 PF01202 Shikimate kinase M892_10240 PF00920 Dehydratase family M892_10245 PF01548 Transposase M892_10245 PF02371 Transposase IS116/IS110/IS902 family M892_10250 PF00893 Small Multidrug Resistance protein M892_10255 PF00893 Small Multidrug Resistance protein M892_10260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_10260 PF03466 LysR substrate binding domain M892_10270 PF00069 Protein kinase domain M892_10295 PF13340 Putative transposase of IS4/5 family (DUF4096) M892_10310 PF00528 Binding-protein-dependent transport system inner membrane component M892_10310 PF12911 N-terminal TM domain of oligopeptide transport permease C M892_10320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M892_10325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M892_10325 PF00005 ABC transporter M892_10335 PF13419 Haloacid dehalogenase-like hydrolase M892_10365 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M892_10370 PF00580 UvrD/REP helicase N-terminal domain M892_10370 PF13361 UvrD-like helicase C-terminal domain M892_10375 PF16295 Tetracyclin repressor-like, C-terminal domain M892_10375 PF00440 Bacterial regulatory proteins, tetR family M892_10380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_10385 PF00873 AcrB/AcrD/AcrF family M892_10390 PF04380 Membrane fusogenic activity M892_10395 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M892_10395 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M892_10400 PF03466 LysR substrate binding domain M892_10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_10410 PF13358 DDE superfamily endonuclease M892_10415 PF13358 DDE superfamily endonuclease M892_10440 PF12724 Flavodoxin domain M892_10445 PF02386 Cation transport protein M892_10450 PF09186 Domain of unknown function (DUF1949) M892_10450 PF01205 Uncharacterized protein family UPF0029 M892_10455 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M892_10455 PF00378 Enoyl-CoA hydratase/isomerase M892_10455 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M892_10460 PF00108 Thiolase, N-terminal domain M892_10460 PF02803 Thiolase, C-terminal domain M892_10465 PF08240 Alcohol dehydrogenase GroES-like domain M892_10465 PF00107 Zinc-binding dehydrogenase M892_10470 PF03466 LysR substrate binding domain M892_10470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_10480 PF01206 Sulfurtransferase TusA M892_10490 PF01169 Uncharacterized protein family UPF0016 M892_10495 PF02091 Glycyl-tRNA synthetase alpha subunit M892_10500 PF02092 Glycyl-tRNA synthetase beta subunit M892_10500 PF05746 DALR anticodon binding domain M892_10505 PF13006 Insertion element 4 transposase N-terminal M892_10505 PF01609 Transposase DDE domain M892_10510 PF00155 Aminotransferase class I and II M892_10515 PF00011 Hsp20/alpha crystallin family M892_10525 PF01751 Toprim domain M892_10525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_10525 PF18053 DNA gyrase B subunit insert domain M892_10525 PF00986 DNA gyrase B subunit, carboxyl terminus M892_10525 PF00204 DNA gyrase B M892_10530 PF02463 RecF/RecN/SMC N terminal domain M892_10535 PF02768 DNA polymerase III beta subunit, C-terminal domain M892_10535 PF02767 DNA polymerase III beta subunit, central domain M892_10535 PF00712 DNA polymerase III beta subunit, N-terminal domain M892_10540 PF00308 Bacterial dnaA protein M892_10540 PF08299 Bacterial dnaA protein helix-turn-helix M892_10540 PF11638 DnaA N-terminal domain M892_10545 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_10550 PF00528 Binding-protein-dependent transport system inner membrane component M892_10555 PF00468 Ribosomal protein L34 M892_10560 PF00825 Ribonuclease P M892_10565 PF02096 60Kd inner membrane protein M892_10565 PF14849 YidC periplasmic domain M892_10570 PF10396 GTP-binding protein TrmE N-terminus M892_10570 PF12631 MnmE helical domain M892_10570 PF01926 50S ribosome-binding GTPase M892_10575 PF00258 Flavodoxin M892_10580 PF01134 Glucose inhibited division protein A M892_10580 PF13932 GidA associated domain M892_10585 PF02527 rRNA small subunit methyltransferase G M892_10590 PF13614 AAA domain M892_10595 PF02195 ParB-like nuclease domain M892_10595 PF17762 HTH domain found in ParB protein M892_10600 PF03899 ATP synthase I chain M892_10605 PF00119 ATP synthase A chain M892_10610 PF00137 ATP synthase subunit C M892_10615 PF00430 ATP synthase B/B' CF(0) M892_10620 PF00213 ATP synthase delta (OSCP) subunit M892_10625 PF02874 ATP synthase alpha/beta family, beta-barrel domain M892_10625 PF00306 ATP synthase alpha/beta chain, C terminal domain M892_10625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M892_10630 PF00231 ATP synthase M892_10635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M892_10635 PF02874 ATP synthase alpha/beta family, beta-barrel domain M892_10640 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M892_10640 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M892_10645 PF00132 Bacterial transferase hexapeptide (six repeats) M892_10645 PF12804 MobA-like NTP transferase domain M892_10650 PF00528 Binding-protein-dependent transport system inner membrane component M892_10655 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_10660 PF07690 Major Facilitator Superfamily M892_10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_10665 PF03466 LysR substrate binding domain M892_10670 PF00585 C-terminal regulatory domain of Threonine dehydratase M892_10670 PF00291 Pyridoxal-phosphate dependent enzyme M892_10675 PF00920 Dehydratase family M892_10680 PF01063 Amino-transferase class IV M892_10690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M892_10690 PF00205 Thiamine pyrophosphate enzyme, central domain M892_10690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M892_10695 PF13335 Magnesium chelatase, subunit ChlI C-terminal M892_10695 PF01078 Magnesium chelatase, subunit ChlI M892_10700 PF17152 Periplasmic sensor domain M892_10700 PF00990 Diguanylate cyclase, GGDEF domain M892_10710 PF01553 Acyltransferase M892_10715 PF01609 Transposase DDE domain M892_10715 PF13006 Insertion element 4 transposase N-terminal M892_10720 PF01323 DSBA-like thioredoxin domain M892_10725 PF01636 Phosphotransferase enzyme family M892_10730 PF13746 4Fe-4S dicluster domain M892_10730 PF12801 4Fe-4S binding domain M892_10730 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase M892_10735 PF06288 Protein of unknown function (DUF1040) M892_10750 PF07070 SpoOM protein M892_10755 PF03006 Haemolysin-III related M892_10765 PF02386 Cation transport protein M892_10770 PF02254 TrkA-N domain M892_10770 PF02080 TrkA-C domain M892_10775 PF01189 16S rRNA methyltransferase RsmB/F M892_10775 PF01029 NusB family M892_10780 PF00551 Formyl transferase M892_10780 PF02911 Formyl transferase, C-terminal domain M892_10785 PF01327 Polypeptide deformylase M892_10795 PF02481 DNA recombination-mediator protein A M892_10795 PF17782 DprA winged helix domain M892_10800 PF04361 Protein of unknown function (DUF494) M892_10805 PF02222 ATP-grasp domain M892_10805 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M892_10810 PF00731 AIR carboxylase M892_10815 PF01300 Telomere recombination M892_10820 PF01218 Coproporphyrinogen III oxidase M892_10825 PF08501 Shikimate dehydrogenase substrate binding domain M892_10825 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M892_10825 PF01488 Shikimate / quinate 5-dehydrogenase M892_10835 PF00132 Bacterial transferase hexapeptide (six repeats) M892_10880 PF13358 DDE superfamily endonuclease M892_10890 PF00394 Multicopper oxidase M892_10890 PF07731 Multicopper oxidase M892_10890 PF07732 Multicopper oxidase M892_10895 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M892_10900 PF01964 Radical SAM ThiC family M892_10900 PF13667 ThiC-associated domain M892_10905 PF02581 Thiamine monophosphate synthase M892_10910 PF00899 ThiF family M892_10915 PF02597 ThiS family M892_10920 PF05690 Thiazole biosynthesis protein ThiG M892_10925 PF04055 Radical SAM superfamily M892_10925 PF06968 Biotin and Thiamin Synthesis associated domain M892_10930 PF00557 Metallopeptidase family M24 M892_10930 PF01321 Creatinase/Prolidase N-terminal domain M892_10930 PF01321 Creatinase/Prolidase N-terminal domain M892_10930 PF00557 Metallopeptidase family M24 M892_10935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_10935 PF03466 LysR substrate binding domain M892_10940 PF07690 Major Facilitator Superfamily M892_10960 PF05114 Protein of unknown function (DUF692) M892_10970 PF13361 UvrD-like helicase C-terminal domain M892_10970 PF00580 UvrD/REP helicase N-terminal domain M892_10975 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_10985 PF01810 LysE type translocator M892_10995 PF00892 EamA-like transporter family M892_11000 PF09382 RQC domain M892_11000 PF16124 RecQ zinc-binding M892_11000 PF00271 Helicase conserved C-terminal domain M892_11000 PF00270 DEAD/DEAH box helicase M892_11000 PF00570 HRDC domain M892_11010 PF02592 Putative vitamin uptake transporter M892_11015 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_11020 PF02541 Ppx/GppA phosphatase family M892_11025 PF00271 Helicase conserved C-terminal domain M892_11025 PF00270 DEAD/DEAH box helicase M892_11030 PF00085 Thioredoxin M892_11035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M892_11035 PF07498 Rho termination factor, N-terminal domain M892_11035 PF07497 Rho termination factor, RNA-binding domain M892_11045 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M892_11050 PF00111 2Fe-2S iron-sulfur cluster binding domain M892_11055 PF00175 Oxidoreductase NAD-binding domain M892_11080 PF13358 DDE superfamily endonuclease M892_11095 PF13358 DDE superfamily endonuclease M892_11105 PF07219 HemY protein N-terminus M892_11110 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M892_11115 PF02602 Uroporphyrinogen-III synthase HemD M892_11120 PF03900 Porphobilinogen deaminase, C-terminal domain M892_11120 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M892_11125 PF01295 Adenylate cyclase, class-I M892_11125 PF12633 Adenylate cyclase NT domain M892_11130 PF01491 Frataxin-like domain M892_11140 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M892_11140 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M892_11145 PF01678 Diaminopimelate epimerase M892_11155 PF02899 Phage integrase, N-terminal SAM-like domain M892_11155 PF00589 Phage integrase family M892_11160 PF13419 Haloacid dehalogenase-like hydrolase M892_11165 PF10442 FIST C domain M892_11165 PF08495 FIST N domain M892_11165 PF00563 EAL domain M892_11165 PF00990 Diguanylate cyclase, GGDEF domain M892_11190 PF12146 Serine aminopeptidase, S33 M892_11195 PF01810 LysE type translocator M892_11200 PF08668 HDOD domain M892_11200 PF00563 EAL domain M892_11205 PF01022 Bacterial regulatory protein, arsR family M892_11210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M892_11210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M892_11225 PF01609 Transposase DDE domain M892_11225 PF02281 Transposase Tn5 dimerisation domain M892_11225 PF14706 Transposase DNA-binding M892_11240 PF10694 Protein of unknown function (DUF2500) M892_11245 PF13340 Putative transposase of IS4/5 family (DUF4096) M892_11270 PF01914 MarC family integral membrane protein M892_11285 PF00448 SRP54-type protein, GTPase domain M892_11285 PF02881 SRP54-type protein, helical bundle domain M892_11290 PF00005 ABC transporter M892_11295 PF18075 FtsX extracellular domain M892_11300 PF04545 Sigma-70, region 4 M892_11300 PF00140 Sigma-70 factor, region 1.2 M892_11300 PF04542 Sigma-70 region 2 M892_11305 PF00581 Rhodanese-like domain M892_11310 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M892_11310 PF01694 Rhomboid family M892_11315 PF03748 Flagellar basal body-associated protein FliL M892_11320 PF04345 Chorismate lyase M892_11325 PF01040 UbiA prenyltransferase family M892_11330 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_11340 PF01553 Acyltransferase M892_11345 PF00717 Peptidase S24-like M892_11345 PF01726 LexA DNA binding domain M892_11355 PF01554 MatE M892_11360 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_11360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M892_11365 PF00440 Bacterial regulatory proteins, tetR family M892_11375 PF05958 tRNA (Uracil-5-)-methyltransferase M892_11380 PF07715 TonB-dependent Receptor Plug Domain M892_11380 PF00593 TonB dependent receptor M892_11395 PF01177 Asp/Glu/Hydantoin racemase M892_11455 PF13091 PLD-like domain M892_11460 PF01565 FAD binding domain M892_11460 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M892_11465 PF08279 HTH domain M892_11465 PF03099 Biotin/lipoate A/B protein ligase family M892_11465 PF02237 Biotin protein ligase C terminal domain M892_11470 PF00485 Phosphoribulokinase / Uridine kinase family M892_11500 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M892_11505 PF02357 Transcription termination factor nusG M892_11505 PF00467 KOW motif M892_11510 PF03946 Ribosomal protein L11, N-terminal domain M892_11510 PF00298 Ribosomal protein L11, RNA binding domain M892_11515 PF00687 Ribosomal protein L1p/L10e family M892_11520 PF00466 Ribosomal protein L10 M892_11525 PF16320 Ribosomal protein L7/L12 dimerisation domain M892_11525 PF00542 Ribosomal protein L7/L12 C-terminal domain M892_11530 PF00562 RNA polymerase Rpb2, domain 6 M892_11530 PF10385 RNA polymerase beta subunit external 1 domain M892_11530 PF04563 RNA polymerase beta subunit M892_11530 PF04561 RNA polymerase Rpb2, domain 2 M892_11530 PF04565 RNA polymerase Rpb2, domain 3 M892_11530 PF04560 RNA polymerase Rpb2, domain 7 M892_11535 PF04998 RNA polymerase Rpb1, domain 5 M892_11535 PF05000 RNA polymerase Rpb1, domain 4 M892_11535 PF04983 RNA polymerase Rpb1, domain 3 M892_11535 PF00623 RNA polymerase Rpb1, domain 2 M892_11535 PF04997 RNA polymerase Rpb1, domain 1 M892_11540 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M892_11545 PF00293 NUDIX domain M892_11545 PF09297 NADH pyrophosphatase zinc ribbon domain M892_11560 PF01208 Uroporphyrinogen decarboxylase (URO-D) M892_11565 PF03167 Uracil DNA glycosylase superfamily M892_11570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M892_11575 PF04222 Protein of unknown function (DUF416) M892_11580 PF01595 Cyclin M transmembrane N-terminal domain M892_11580 PF00571 CBS domain M892_11585 PF00216 Bacterial DNA-binding protein M892_11595 PF02843 Phosphoribosylglycinamide synthetase, C domain M892_11595 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M892_11595 PF02844 Phosphoribosylglycinamide synthetase, N domain M892_11600 PF02142 MGS-like domain M892_11600 PF01808 AICARFT/IMPCHase bienzyme M892_11610 PF13411 MerR HTH family regulatory protein M892_11615 PF18500 CadC C-terminal domain 1 M892_11615 PF00486 Transcriptional regulatory protein, C terminal M892_11620 PF13520 Amino acid permease M892_11625 PF01276 Orn/Lys/Arg decarboxylase, major domain M892_11625 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M892_11625 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M892_11680 PF13358 DDE superfamily endonuclease M892_11685 PF13358 DDE superfamily endonuclease M892_11695 PF13358 DDE superfamily endonuclease M892_11700 PF01695 IstB-like ATP binding protein M892_11705 PF00665 Integrase core domain M892_11720 PF13005 zinc-finger binding domain of transposase IS66 M892_11720 PF13007 Transposase C of IS166 homeodomain M892_11720 PF13817 IS66 C-terminal element M892_11720 PF03050 Transposase IS66 family M892_11730 PF00563 EAL domain M892_11730 PF00990 Diguanylate cyclase, GGDEF domain M892_11730 PF13188 PAS domain M892_11730 PF03707 Bacterial signalling protein N terminal repeat M892_11735 PF02954 Bacterial regulatory protein, Fis family M892_11740 PF01207 Dihydrouridine synthase (Dus) M892_11750 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M892_11750 PF00289 Biotin carboxylase, N-terminal domain M892_11750 PF02785 Biotin carboxylase C-terminal domain M892_11755 PF00364 Biotin-requiring enzyme M892_11760 PF01220 Dehydroquinase class II M892_11765 PF16177 Acetyl-coenzyme A synthetase N-terminus M892_11765 PF00501 AMP-binding enzyme M892_11765 PF13193 AMP-binding enzyme C-terminal domain M892_11780 PF12832 MFS_1 like family M892_11785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_11785 PF09308 LuxQ, periplasmic M892_11785 PF00512 His Kinase A (phospho-acceptor) domain M892_11785 PF00072 Response regulator receiver domain M892_11790 PF10415 Fumarase C C-terminus M892_11790 PF00206 Lyase M892_11805 PF00474 Sodium:solute symporter family M892_11815 PF01914 MarC family integral membrane protein M892_11820 PF00196 Bacterial regulatory proteins, luxR family M892_11820 PF00072 Response regulator receiver domain M892_11825 PF02683 Cytochrome C biogenesis protein transmembrane region M892_11825 PF11412 Disulphide bond corrector protein DsbC M892_11830 PF03605 Anaerobic c4-dicarboxylate membrane transporter M892_11835 PF10415 Fumarase C C-terminus M892_11835 PF00206 Lyase M892_11840 PF04186 FxsA cytoplasmic membrane protein M892_11845 PF00588 SpoU rRNA Methylase family M892_11850 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M892_11850 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M892_11855 PF16527 Two-component sensor protein CpxA, periplasmic domain M892_11855 PF00672 HAMP domain M892_11855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_11855 PF00512 His Kinase A (phospho-acceptor) domain M892_11860 PF00486 Transcriptional regulatory protein, C terminal M892_11860 PF00072 Response regulator receiver domain M892_11880 PF16916 Dimerisation domain of Zinc Transporter M892_11880 PF01545 Cation efflux family M892_11885 PF00365 Phosphofructokinase M892_11890 PF01554 MatE M892_11895 PF00166 Chaperonin 10 Kd subunit M892_11900 PF00118 TCP-1/cpn60 chaperonin family M892_11905 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_11915 PF02308 MgtC family M892_11920 PF04055 Radical SAM superfamily M892_11925 PF01132 Elongation factor P (EF-P) OB domain M892_11925 PF09285 Elongation factor P, C-terminal M892_11925 PF08207 Elongation factor P (EF-P) KOW-like domain M892_11940 PF02313 Fumarate reductase subunit D M892_11945 PF02300 Fumarate reductase subunit C M892_11950 PF13085 2Fe-2S iron-sulfur cluster binding domain M892_11950 PF13183 4Fe-4S dicluster domain M892_11955 PF00890 FAD binding domain M892_11955 PF02910 Fumarate reductase flavoprotein C-term M892_11960 PF00152 tRNA synthetases class II (D, K and N) M892_11970 PF00440 Bacterial regulatory proteins, tetR family M892_11970 PF08360 QacR-like protein, C-terminal region M892_11980 PF01551 Peptidase family M23 M892_11985 PF00132 Bacterial transferase hexapeptide (six repeats) M892_11985 PF06426 Serine acetyltransferase, N-terminal M892_11990 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M892_11990 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M892_11995 PF02556 Preprotein translocase subunit SecB M892_12000 PF00581 Rhodanese-like domain M892_12005 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M892_12005 PF01676 Metalloenzyme superfamily M892_12015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_12015 PF00672 HAMP domain M892_12015 PF02743 Cache domain M892_12020 PF00939 Sodium:sulfate symporter transmembrane region M892_12035 PF14706 Transposase DNA-binding M892_12035 PF01609 Transposase DDE domain M892_12035 PF02281 Transposase Tn5 dimerisation domain M892_12040 PF02666 Phosphatidylserine decarboxylase M892_12045 PF03193 RsgA GTPase M892_12050 PF00929 Exonuclease M892_12115 PF08331 Domain of unknown function (DUF1730) M892_12120 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M892_12125 PF01520 N-acetylmuramoyl-L-alanine amidase M892_12130 PF01119 DNA mismatch repair protein, C-terminal domain M892_12130 PF08676 MutL C terminal dimerisation domain M892_12140 PF17209 Hfq protein M892_12145 PF13167 GTP-binding GTPase N-terminal M892_12145 PF01926 50S ribosome-binding GTPase M892_12145 PF16360 GTP-binding GTPase Middle Region M892_12150 PF12221 Bacterial membrane protein N terminal M892_12150 PF01145 SPFH domain / Band 7 family M892_12155 PF01145 SPFH domain / Band 7 family M892_12160 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M892_12165 PF00709 Adenylosuccinate synthetase M892_12170 PF08238 Sel1 repeat M892_12175 PF00042 Globin M892_12175 PF00175 Oxidoreductase NAD-binding domain M892_12175 PF00970 Oxidoreductase FAD-binding domain M892_12180 PF02082 Transcriptional regulator M892_12185 PF17876 Cold shock domain M892_12185 PF08461 Ribonuclease R winged-helix domain M892_12185 PF08206 Ribonuclease B OB domain M892_12185 PF00773 RNB domain M892_12185 PF00575 S1 RNA binding domain M892_12190 PF08032 RNA 2'-O ribose methyltransferase substrate binding M892_12190 PF00588 SpoU rRNA Methylase family M892_12195 PF13419 Haloacid dehalogenase-like hydrolase M892_12200 PF00579 tRNA synthetases class I (W and Y) M892_12210 PF00117 Glutamine amidotransferase class-I M892_12215 PF00202 Aminotransferase class-III M892_12220 PF04958 Arginine N-succinyltransferase beta subunit M892_12225 PF00171 Aldehyde dehydrogenase family M892_12235 PF00027 Cyclic nucleotide-binding domain M892_12235 PF13545 Crp-like helix-turn-helix domain M892_12240 PF00485 Phosphoribulokinase / Uridine kinase family M892_12245 PF06794 Uncharacterised protein family (UPF0270) M892_12250 PF00561 alpha/beta hydrolase fold M892_12260 PF00005 ABC transporter M892_12260 PF12848 ABC transporter M892_12265 PF02525 Flavodoxin-like fold M892_12270 PF00999 Sodium/hydrogen exchanger family M892_12270 PF02254 TrkA-N domain M892_12280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M892_12285 PF01112 Asparaginase M892_12290 PF04102 SlyX M892_12300 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M892_12300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M892_12305 PF13309 HTH domain M892_12305 PF08348 YheO-like PAS domain M892_12310 PF02635 DsrE/DsrF-like family M892_12315 PF02635 DsrE/DsrF-like family M892_12320 PF04077 DsrH like protein M892_12325 PF00164 Ribosomal protein S12/S23 M892_12330 PF00177 Ribosomal protein S7p/S5e M892_12335 PF03144 Elongation factor Tu domain 2 M892_12335 PF00009 Elongation factor Tu GTP binding domain M892_12335 PF03764 Elongation factor G, domain IV M892_12335 PF14492 Elongation Factor G, domain II M892_12335 PF00679 Elongation factor G C-terminus M892_12355 PF03144 Elongation factor Tu domain 2 M892_12355 PF03143 Elongation factor Tu C-terminal domain M892_12355 PF00009 Elongation factor Tu GTP binding domain M892_12360 PF04324 BFD-like [2Fe-2S] binding domain M892_12365 PF00210 Ferritin-like domain M892_12370 PF03949 Malic enzyme, NAD binding domain M892_12370 PF00390 Malic enzyme, N-terminal domain M892_12375 PF01340 Met Apo-repressor, MetJ M892_12380 PF01053 Cys/Met metabolism PLP-dependent enzyme M892_12385 PF00742 Homoserine dehydrogenase M892_12385 PF00696 Amino acid kinase family M892_12385 PF03447 Homoserine dehydrogenase, NAD binding domain M892_12390 PF02219 Methylenetetrahydrofolate reductase M892_12400 PF00311 Phosphoenolpyruvate carboxylase M892_12405 PF01546 Peptidase family M20/M25/M40 M892_12405 PF07687 Peptidase dimerisation domain M892_12410 PF02774 Semialdehyde dehydrogenase, dimerisation domain M892_12410 PF01118 Semialdehyde dehydrogenase, NAD binding domain M892_12415 PF00696 Amino acid kinase family M892_12420 PF00764 Arginosuccinate synthase M892_12425 PF00583 Acetyltransferase (GNAT) family M892_12425 PF14698 Argininosuccinate lyase C-terminal M892_12425 PF00206 Lyase M892_12440 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_12440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M892_12445 PF00462 Glutaredoxin M892_12445 PF08534 Redoxin M892_12450 PF03466 LysR substrate binding domain M892_12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_12455 PF00905 Penicillin binding protein transpeptidase domain M892_12455 PF00912 Transglycosylase M892_12455 PF17092 Penicillin-binding protein OB-like domain M892_12480 PF11741 AMIN domain M892_12480 PF03958 Bacterial type II/III secretion system short domain M892_12480 PF07660 Secretin and TonB N terminus short domain M892_12480 PF00263 Bacterial type II and III secretion system protein M892_12485 PF01202 Shikimate kinase M892_12490 PF01761 3-dehydroquinate synthase M892_12500 PF02086 D12 class N6 adenine-specific DNA methyltransferase M892_12505 PF00834 Ribulose-phosphate 3 epimerase family M892_12510 PF01250 Ribosomal protein S6 M892_12515 PF00436 Single-strand binding protein family M892_12520 PF01084 Ribosomal protein S18 M892_12525 PF01281 Ribosomal protein L9, N-terminal domain M892_12525 PF03948 Ribosomal protein L9, C-terminal domain M892_12540 PF00772 DnaB-like helicase N terminal domain M892_12540 PF03796 DnaB-like helicase C terminal domain M892_12545 PF00842 Alanine racemase, C-terminal domain M892_12545 PF01168 Alanine racemase, N-terminal domain M892_12550 PF01609 Transposase DDE domain M892_12550 PF13006 Insertion element 4 transposase N-terminal M892_12560 PF01894 Uncharacterised protein family UPF0047 M892_12565 PF00342 Phosphoglucose isomerase M892_12575 PF01475 Ferric uptake regulator family M892_12580 PF01207 Dihydrouridine synthase (Dus) M892_12600 PF00667 FAD binding domain M892_12600 PF00175 Oxidoreductase NAD-binding domain M892_12600 PF00258 Flavodoxin M892_12605 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M892_12605 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M892_12610 PF01507 Phosphoadenosine phosphosulfate reductase family M892_12635 PF13358 DDE superfamily endonuclease M892_12645 PF00999 Sodium/hydrogen exchanger family M892_12650 PF02574 Homocysteine S-methyltransferase M892_12650 PF00809 Pterin binding enzyme M892_12650 PF02965 Vitamin B12 dependent methionine synthase, activation domain M892_12650 PF02607 B12 binding domain M892_12650 PF02310 B12 binding domain M892_12655 PF00696 Amino acid kinase family M892_12655 PF01842 ACT domain M892_12660 PF00266 Aminotransferase class-V M892_12670 PF00005 ABC transporter M892_12670 PF17755 UvrA DNA-binding domain M892_12670 PF17760 UvrA interaction domain M892_12675 PF00483 Nucleotidyl transferase M892_12680 PF00196 Bacterial regulatory proteins, luxR family M892_12685 PF00436 Single-strand binding protein family M892_12690 PF17157 Gammaproteobacterial periplasmic sensor domain M892_12690 PF00563 EAL domain M892_12690 PF00990 Diguanylate cyclase, GGDEF domain M892_12710 PF00263 Bacterial type II and III secretion system protein M892_12710 PF03958 Bacterial type II/III secretion system short domain M892_12715 PF01471 Putative peptidoglycan binding domain M892_12715 PF13401 AAA domain M892_12725 PF00437 Type II/IV secretion system protein M892_12725 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M892_12730 PF00482 Type II secretion system (T2SS), protein F M892_12780 PF04085 rod shape-determining protein MreC M892_12785 PF04093 rod shape-determining protein MreD M892_12790 PF02545 Maf-like protein M892_12795 PF10150 Ribonuclease E/G family M892_12795 PF00575 S1 RNA binding domain M892_12800 PF13502 AsmA-like C-terminal region M892_12800 PF13116 Protein of unknown function M892_12805 PF00795 Carbon-nitrogen hydrolase M892_12810 PF01523 Putative modulator of DNA gyrase M892_12815 PF02562 PhoH-like protein M892_12815 PF13638 PIN domain M892_12820 PF18339 RapA N-terminal Tudor like domain 1 M892_12820 PF00176 SNF2 family N-terminal domain M892_12820 PF12137 RNA polymerase recycling family C-terminal M892_12820 PF00271 Helicase conserved C-terminal domain M892_12820 PF18337 RapA N-terminal Tudor like domain M892_12830 PF00849 RNA pseudouridylate synthase M892_12835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M892_12835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M892_12840 PF04751 Protein of unknown function (DUF615) M892_12845 PF01523 Putative modulator of DNA gyrase M892_12850 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_12855 PF01769 Divalent cation transporter M892_12855 PF03448 MgtE intracellular N domain M892_12855 PF00571 CBS domain M892_12860 PF00381 PTS HPr component phosphorylation site M892_12865 PF03668 P-loop ATPase protein family M892_12870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M892_12875 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M892_12880 PF04552 Sigma-54, DNA binding domain M892_12880 PF04963 Sigma-54 factor, core binding domain M892_12880 PF00309 Sigma-54 factor, Activator interacting domain (AID) M892_12885 PF03968 OstA-like protein M892_12895 PF00571 CBS domain M892_12895 PF01380 SIS domain M892_12900 PF01699 Sodium/calcium exchanger protein M892_12905 PF00005 ABC transporter M892_12910 PF02405 Permease MlaE M892_12915 PF02470 MlaD protein M892_12920 PF05494 MlaC protein M892_12930 PF01722 BolA-like protein M892_12935 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M892_12940 PF01553 Acyltransferase M892_12945 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_12950 PF01042 Endoribonuclease L-PSP M892_12955 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M892_12955 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M892_12960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M892_12960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M892_12970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M892_12970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M892_12985 PF06877 Regulator of ribonuclease activity B M892_12995 PF00583 Acetyltransferase (GNAT) family M892_13005 PF00133 tRNA synthetases class I (I, L, M and V) M892_13005 PF10458 Valyl tRNA synthetase tRNA binding arm M892_13005 PF08264 Anticodon-binding domain of tRNA M892_13010 PF04364 DNA polymerase III chi subunit, HolC M892_13015 PF02789 Cytosol aminopeptidase family, N-terminal domain M892_13015 PF00883 Cytosol aminopeptidase family, catalytic domain M892_13020 PF03739 Lipopolysaccharide export system permease LptF/LptG M892_13025 PF03739 Lipopolysaccharide export system permease LptF/LptG M892_13035 PF00106 short chain dehydrogenase M892_13060 PF01522 Polysaccharide deacetylase M892_13065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M892_13070 PF02378 Phosphotransferase system, EIIC M892_13075 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M892_13080 PF02056 Family 4 glycosyl hydrolase M892_13080 PF11975 Family 4 glycosyl hydrolase C-terminal domain M892_13085 PF04794 YdjC-like protein M892_13095 PF00072 Response regulator receiver domain M892_13130 PF00171 Aldehyde dehydrogenase family M892_13160 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M892_13160 PF01464 Transglycosylase SLT domain M892_13165 PF04362 Bacterial Fe(2+) trafficking M892_13170 PF00730 HhH-GPD superfamily base excision DNA repair protein M892_13170 PF14815 NUDIX domain M892_13170 PF00633 Helix-hairpin-helix motif M892_13175 PF02390 Putative methyltransferase M892_13180 PF02086 D12 class N6 adenine-specific DNA methyltransferase M892_13185 PF04960 Glutaminase M892_13200 PF04055 Radical SAM superfamily M892_13200 PF06969 HemN C-terminal domain M892_13205 PF01725 Ham1 family M892_13215 PF02594 Uncharacterised ACR, YggU family COG1872 M892_13220 PF02325 YGGT family M892_13225 PF03807 NADP oxidoreductase coenzyme F420-dependent M892_13225 PF14748 Pyrroline-5-carboxylate reductase dimerisation M892_13230 PF01168 Alanine racemase, N-terminal domain M892_13235 PF00437 Type II/IV secretion system protein M892_13240 PF00437 Type II/IV secretion system protein M892_13245 PF03652 Holliday junction resolvase M892_13250 PF02622 Uncharacterized ACR, COG1678 M892_13255 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M892_13255 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M892_13260 PF04452 RNA methyltransferase M892_13265 PF04231 Endonuclease I M892_13270 PF17283 SprT-like zinc ribbon domain M892_13270 PF10263 SprT-like family M892_13280 PF02773 S-adenosylmethionine synthetase, C-terminal domain M892_13280 PF02772 S-adenosylmethionine synthetase, central domain M892_13280 PF00438 S-adenosylmethionine synthetase, N-terminal domain M892_13285 PF00456 Transketolase, thiamine diphosphate binding domain M892_13285 PF02780 Transketolase, C-terminal domain M892_13285 PF02779 Transketolase, pyrimidine binding domain M892_13295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M892_13295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M892_13300 PF00162 Phosphoglycerate kinase M892_13305 PF01116 Fructose-bisphosphate aldolase class-II M892_13310 PF00924 Mechanosensitive ion channel M892_13310 PF05552 Conserved TM helix M892_13315 PF01810 LysE type translocator M892_13320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_13320 PF03466 LysR substrate binding domain M892_13325 PF04402 Protein of unknown function (DUF541) M892_13330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M892_13330 PF01842 ACT domain M892_13330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M892_13335 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M892_13340 PF01812 5-formyltetrahydrofolate cyclo-ligase family M892_13345 PF05164 Cell division protein ZapA M892_13350 PF03695 Uncharacterised protein family (UPF0149) M892_13355 PF01494 FAD binding domain M892_13360 PF01494 FAD binding domain M892_13380 PF03937 Flavinator of succinate dehydrogenase M892_13390 PF02910 Fumarate reductase flavoprotein C-term M892_13390 PF00890 FAD binding domain M892_13395 PF08281 Sigma-70, region 4 M892_13395 PF04542 Sigma-70 region 2 M892_13400 PF03872 Anti sigma-E protein RseA, N-terminal domain M892_13400 PF03873 Anti sigma-E protein RseA, C-terminal domain M892_13405 PF03888 MucB/RseB N-terminal domain M892_13405 PF17188 MucB/RseB C-terminal domain M892_13415 PF06421 GTP-binding protein LepA C-terminus M892_13415 PF00679 Elongation factor G C-terminus M892_13415 PF00009 Elongation factor Tu GTP binding domain M892_13415 PF03144 Elongation factor Tu domain 2 M892_13420 PF10502 Signal peptidase, peptidase S26 M892_13425 PF14622 Ribonuclease-III-like M892_13425 PF00035 Double-stranded RNA binding motif M892_13430 PF07650 KH domain M892_13430 PF01926 50S ribosome-binding GTPase M892_13435 PF11967 Recombination protein O N terminal M892_13435 PF02565 Recombination protein O C terminal M892_13440 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M892_13445 PF01648 4'-phosphopantetheinyl transferase superfamily M892_13450 PF13006 Insertion element 4 transposase N-terminal M892_13450 PF01609 Transposase DDE domain M892_13455 PF01627 Hpt domain M892_13455 PF00072 Response regulator receiver domain M892_13455 PF00512 His Kinase A (phospho-acceptor) domain M892_13455 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M892_13455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_13455 PF00672 HAMP domain M892_13460 PF01938 TRAM domain M892_13460 PF05958 tRNA (Uracil-5-)-methyltransferase M892_13465 PF04607 Region found in RelA / SpoT proteins M892_13465 PF13291 ACT domain M892_13465 PF02824 TGS domain M892_13470 PF03819 MazG nucleotide pyrophosphohydrolase domain M892_13475 PF06418 CTP synthase N-terminus M892_13475 PF00117 Glutamine amidotransferase class-I M892_13480 PF03952 Enolase, N-terminal domain M892_13480 PF00113 Enolase, C-terminal TIM barrel domain M892_13485 PF04977 Septum formation initiator M892_13490 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M892_13495 PF02542 YgbB family M892_13500 PF01142 tRNA pseudouridine synthase D (TruD) M892_13505 PF01975 Survival protein SurE M892_13515 PF01476 LysM domain M892_13515 PF01551 Peptidase family M23 M892_13520 PF04539 Sigma-70 region 3 M892_13520 PF00140 Sigma-70 factor, region 1.2 M892_13520 PF04545 Sigma-70, region 4 M892_13520 PF04542 Sigma-70 region 2 M892_13525 PF01609 Transposase DDE domain M892_13525 PF13006 Insertion element 4 transposase N-terminal M892_13530 PF00488 MutS domain V M892_13530 PF01624 MutS domain I M892_13530 PF05190 MutS family domain IV M892_13530 PF05188 MutS domain II M892_13530 PF05192 MutS domain III M892_13535 PF02464 Competence-damaged protein M892_13540 PF00154 recA bacterial DNA recombination protein M892_13545 PF02631 RecX family M892_13550 PF02272 DHHA1 domain M892_13550 PF01411 tRNA synthetases class II (A) M892_13550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M892_13555 PF01842 ACT domain M892_13555 PF00696 Amino acid kinase family M892_13555 PF13840 ACT domain M892_13560 PF02599 Global regulator protein family M892_13625 PF00196 Bacterial regulatory proteins, luxR family M892_13630 PF04277 Oxaloacetate decarboxylase, gamma chain M892_13635 PF00364 Biotin-requiring enzyme M892_13635 PF02436 Conserved carboxylase domain M892_13635 PF00682 HMGL-like M892_13640 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit M892_13650 PF09335 SNARE associated Golgi protein M892_13655 PF00675 Insulinase (Peptidase family M16) M892_13655 PF05193 Peptidase M16 inactive domain M892_13660 PF04262 Glutamate-cysteine ligase M892_13670 PF02664 S-Ribosylhomocysteinase (LuxS) M892_13675 PF03471 Transporter associated domain M892_13675 PF00571 CBS domain M892_13675 PF01595 Cyclin M transmembrane N-terminal domain M892_13680 PF01578 Cytochrome C assembly protein M892_13685 PF00448 SRP54-type protein, GTPase domain M892_13685 PF02881 SRP54-type protein, helical bundle domain M892_13685 PF02978 Signal peptide binding domain M892_13690 PF00886 Ribosomal protein S16 M892_13695 PF01782 RimM N-terminal domain M892_13695 PF05239 PRC-barrel domain M892_13700 PF01746 tRNA (Guanine-1)-methyltransferase M892_13705 PF01245 Ribosomal protein L19 M892_13710 PF01548 Transposase M892_13710 PF02371 Transposase IS116/IS110/IS902 family M892_13715 PF03884 DNA gyrase inhibitor YacG M892_13720 PF07072 Cell division protein M892_13725 PF01121 Dephospho-CoA kinase M892_13730 PF06750 Bacterial Peptidase A24 N-terminal domain M892_13730 PF01478 Type IV leader peptidase family M892_13735 PF00482 Type II secretion system (T2SS), protein F M892_13755 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M892_13755 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M892_13760 PF01510 N-acetylmuramoyl-L-alanine amidase M892_13765 PF00392 Bacterial regulatory proteins, gntR family M892_13765 PF07729 FCD domain M892_13770 PF00456 Transketolase, thiamine diphosphate binding domain M892_13770 PF17831 Pyruvate dehydrogenase E1 component middle domain M892_13775 PF02817 e3 binding domain M892_13775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M892_13775 PF00364 Biotin-requiring enzyme M892_13780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M892_13780 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_13795 PF00440 Bacterial regulatory proteins, tetR family M892_13800 PF00156 Phosphoribosyl transferase domain M892_13805 PF00484 Carbonic anhydrase M892_13810 PF00916 Sulfate permease family M892_13810 PF01740 STAS domain M892_13815 PF00005 ABC transporter M892_13820 PF01061 ABC-2 type transporter M892_13830 PF03279 Bacterial lipid A biosynthesis acyltransferase M892_13835 PF02569 Pantoate-beta-alanine ligase M892_13840 PF02548 Ketopantoate hydroxymethyltransferase M892_13845 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M892_13850 PF12626 Polymerase A arginine-rich C-terminus M892_13850 PF01743 Poly A polymerase head domain M892_13850 PF12627 Probable RNA and SrmB- binding site of polymerase A M892_13855 PF00749 tRNA synthetases class I (E and Q), catalytic domain M892_13860 PF01258 Prokaryotic dksA/traR C4-type zinc finger M892_13865 PF17746 SfsA N-terminal OB domain M892_13865 PF03749 Sugar fermentation stimulation protein RE domain M892_13870 PF08482 ATP-dependent helicase C-terminal M892_13870 PF00271 Helicase conserved C-terminal domain M892_13870 PF04408 Helicase associated domain (HA2) M892_13870 PF00270 DEAD/DEAH box helicase M892_13875 PF00912 Transglycosylase M892_13875 PF14814 Bifunctional transglycosylase second domain M892_13875 PF00905 Penicillin binding protein transpeptidase domain M892_13880 PF01734 Patatin-like phospholipase M892_13885 PF00330 Aconitase family (aconitate hydratase) M892_13885 PF06434 Aconitate hydratase 2 N-terminus M892_13885 PF11791 Aconitate B N-terminal domain M892_13890 PF01548 Transposase M892_13890 PF02371 Transposase IS116/IS110/IS902 family M892_13900 PF06062 Uncharacterised protein family (UPF0231) M892_13905 PF00543 Nitrogen regulatory protein P-II M892_13910 PF00909 Ammonium Transporter Family M892_13915 PF13416 Bacterial extracellular solute-binding protein M892_13925 PF00005 ABC transporter M892_13925 PF08402 TOBE domain M892_13930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M892_13930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M892_13930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M892_13930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M892_13935 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain M892_13935 PF06165 Glycosyltransferase family 36 M892_13940 PF00728 Glycosyl hydrolase family 20, catalytic domain M892_13940 PF02838 Glycosyl hydrolase family 20, domain 2 M892_13945 PF01869 BadF/BadG/BcrA/BcrD ATPase family M892_13955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M892_13955 PF00005 ABC transporter M892_13960 PF00005 ABC transporter M892_13960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M892_13965 PF00528 Binding-protein-dependent transport system inner membrane component M892_13965 PF12911 N-terminal TM domain of oligopeptide transport permease C M892_13970 PF00528 Binding-protein-dependent transport system inner membrane component M892_13975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M892_13980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_13980 PF00072 Response regulator receiver domain M892_13980 PF00512 His Kinase A (phospho-acceptor) domain M892_13980 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_13985 PF08468 Methyltransferase small domain N-terminal M892_13985 PF05175 Methyltransferase small domain M892_13990 PF01594 AI-2E family transporter M892_14000 PF00202 Aminotransferase class-III M892_14005 PF01521 Iron-sulphur cluster biosynthesis M892_14010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_14015 PF00873 AcrB/AcrD/AcrF family M892_14020 PF01476 LysM domain M892_14020 PF08525 Opacity-associated protein A N-terminal motif M892_14020 PF01551 Peptidase family M23 M892_14025 PF00579 tRNA synthetases class I (W and Y) M892_14040 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M892_14045 PF13609 Gram-negative porin M892_14050 PF01272 Transcription elongation factor, GreA/GreB, C-term M892_14050 PF03449 Transcription elongation factor, N-terminal M892_14055 PF01985 CRS1 / YhbY (CRM) domain M892_14060 PF01728 FtsJ-like methyltransferase M892_14065 PF06480 FtsH Extracellular M892_14065 PF01434 Peptidase family M41 M892_14065 PF17862 AAA+ lid domain M892_14065 PF00004 ATPase family associated with various cellular activities (AAA) M892_14070 PF00809 Pterin binding enzyme M892_14075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M892_14075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M892_14075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M892_14075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M892_14085 PF03840 Preprotein translocase SecG subunit M892_14100 PF17384 RimP C-terminal SH3 domain M892_14100 PF02576 RimP N-terminal domain M892_14105 PF00575 S1 RNA binding domain M892_14105 PF08529 NusA N-terminal domain M892_14105 PF13184 NusA-like KH domain M892_14110 PF00009 Elongation factor Tu GTP binding domain M892_14110 PF04760 Translation initiation factor IF-2, N-terminal region M892_14110 PF11987 Translation-initiation factor 2 M892_14110 PF08364 Bacterial translation initiation factor IF-2 associated region M892_14115 PF02033 Ribosome-binding factor A M892_14120 PF09157 Pseudouridine synthase II TruB, C-terminal M892_14120 PF16198 tRNA pseudouridylate synthase B C-terminal domain M892_14120 PF01509 TruB family pseudouridylate synthase (N terminal domain) M892_14125 PF00312 Ribosomal protein S15 M892_14130 PF00013 KH domain M892_14130 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M892_14130 PF01138 3' exoribonuclease family, domain 1 M892_14130 PF03725 3' exoribonuclease family, domain 2 M892_14130 PF00575 S1 RNA binding domain M892_14135 PF07719 Tetratricopeptide repeat M892_14135 PF13181 Tetratricopeptide repeat M892_14145 PF01554 MatE M892_14160 PF00563 EAL domain M892_14160 PF00990 Diguanylate cyclase, GGDEF domain M892_14160 PF03707 Bacterial signalling protein N terminal repeat M892_14170 PF13508 Acetyltransferase (GNAT) domain M892_14190 PF00009 Elongation factor Tu GTP binding domain M892_14190 PF03144 Elongation factor Tu domain 2 M892_14190 PF16658 Class II release factor RF3, C-terminal domain M892_14200 PF01026 TatD related DNase M892_14205 PF01773 Na+ dependent nucleoside transporter N-terminus M892_14205 PF07670 Nucleoside recognition M892_14205 PF07662 Na+ dependent nucleoside transporter C-terminus M892_14210 PF01791 DeoC/LacD family aldolase M892_14215 PF00591 Glycosyl transferase family, a/b domain M892_14215 PF02885 Glycosyl transferase family, helical bundle domain M892_14215 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M892_14220 PF01676 Metalloenzyme superfamily M892_14225 PF01048 Phosphorylase superfamily M892_14235 PF18429 Domain of unknown function (DUF5609) M892_14245 PF18073 Rubredoxin metal binding domain M892_14250 PF00679 Elongation factor G C-terminus M892_14250 PF14492 Elongation Factor G, domain II M892_14250 PF00009 Elongation factor Tu GTP binding domain M892_14250 PF03144 Elongation factor Tu domain 2 M892_14250 PF03764 Elongation factor G, domain IV M892_14280 PF00501 AMP-binding enzyme M892_14285 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M892_14285 PF01464 Transglycosylase SLT domain M892_14290 PF03466 LysR substrate binding domain M892_14290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_14310 PF03050 Transposase IS66 family M892_14310 PF13817 IS66 C-terminal element M892_14310 PF13007 Transposase C of IS166 homeodomain M892_14310 PF13005 zinc-finger binding domain of transposase IS66 M892_14330 PF13629 Pilus formation protein N terminal region M892_14330 PF00263 Bacterial type II and III secretion system protein M892_14330 PF04972 BON domain M892_14345 PF00437 Type II/IV secretion system protein M892_14385 PF00691 OmpA family M892_14385 PF05736 OprF membrane domain M892_14395 PF03466 LysR substrate binding domain M892_14395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_14400 PF13520 Amino acid permease M892_14405 PF04074 YhcH/YjgK/YiaL M892_14410 PF00703 Glycosyl hydrolases family 2 M892_14410 PF02929 Beta galactosidase small chain M892_14410 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M892_14410 PF16353 Domain of unknown function(DUF4981) M892_14410 PF02837 Glycosyl hydrolases family 2, sugar binding domain M892_14415 PF16353 Domain of unknown function(DUF4981) M892_14415 PF00703 Glycosyl hydrolases family 2 M892_14415 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M892_14415 PF02929 Beta galactosidase small chain M892_14415 PF02837 Glycosyl hydrolases family 2, sugar binding domain M892_14420 PF00703 Glycosyl hydrolases family 2 M892_14420 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M892_14420 PF16353 Domain of unknown function(DUF4981) M892_14420 PF02837 Glycosyl hydrolases family 2, sugar binding domain M892_14420 PF02929 Beta galactosidase small chain M892_14425 PF00356 Bacterial regulatory proteins, lacI family M892_14430 PF03717 Penicillin-binding Protein dimerisation domain M892_14430 PF00905 Penicillin binding protein transpeptidase domain M892_14440 PF16363 GDP-mannose 4,6 dehydratase M892_14445 PF01548 Transposase M892_14445 PF02371 Transposase IS116/IS110/IS902 family M892_14450 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M892_14450 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M892_14460 PF10509 Galactokinase galactose-binding signature M892_14460 PF00288 GHMP kinases N terminal domain M892_14460 PF08544 GHMP kinases C terminal M892_14465 PF01263 Aldose 1-epimerase M892_14470 PF00356 Bacterial regulatory proteins, lacI family M892_14475 PF02378 Phosphotransferase system, EIIC M892_14475 PF00367 phosphotransferase system, EIIB M892_14490 PF01588 Putative tRNA binding domain M892_14510 PF01464 Transglycosylase SLT domain M892_14510 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M892_14520 PF01266 FAD dependent oxidoreductase M892_14520 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M892_14525 PF08220 DeoR-like helix-turn-helix domain M892_14525 PF00455 DeoR C terminal sensor domain M892_14530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M892_14530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M892_14535 PF00230 Major intrinsic protein M892_14540 PF07690 Major Facilitator Superfamily M892_14545 PF03009 Glycerophosphoryl diester phosphodiesterase family M892_14550 PF14602 Hexapeptide repeat of succinyl-transferase M892_14550 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle M892_14570 PF07130 YebG protein M892_14575 PF03466 LysR substrate binding domain M892_14575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_14585 PF11893 Domain of unknown function (DUF3413) M892_14585 PF00884 Sulfatase M892_14590 PF17946 RecC C-terminal domain M892_14600 PF12705 PD-(D/E)XK nuclease superfamily M892_14600 PF13361 UvrD-like helicase C-terminal domain M892_14600 PF00580 UvrD/REP helicase N-terminal domain M892_14605 PF13538 UvrD-like helicase C-terminal domain M892_14620 PF13006 Insertion element 4 transposase N-terminal M892_14620 PF01609 Transposase DDE domain M892_14630 PF00583 Acetyltransferase (GNAT) family M892_14630 PF00696 Amino acid kinase family M892_14645 PF00899 ThiF family M892_14650 PF02657 Fe-S metabolism associated domain M892_14655 PF00266 Aminotransferase class-V M892_14660 PF01965 DJ-1/PfpI family M892_14665 PF08546 Ketopantoate reductase PanE/ApbA C terminal M892_14665 PF02558 Ketopantoate reductase PanE/ApbA M892_14670 PF03502 Nucleoside-specific channel-forming protein, Tsx M892_14685 PF04542 Sigma-70 region 2 M892_14685 PF04545 Sigma-70, region 4 M892_14695 PF07690 Major Facilitator Superfamily M892_14700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M892_14710 PF05175 Methyltransferase small domain M892_14715 PF01722 BolA-like protein M892_14720 PF11973 NQRA C-terminal domain M892_14720 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M892_14725 PF03116 NQR2, RnfD, RnfE family M892_14730 PF04205 FMN-binding domain M892_14735 PF02508 Rnf-Nqr subunit, membrane protein M892_14740 PF02508 Rnf-Nqr subunit, membrane protein M892_14745 PF00111 2Fe-2S iron-sulfur cluster binding domain M892_14745 PF00175 Oxidoreductase NAD-binding domain M892_14745 PF00970 Oxidoreductase FAD-binding domain M892_14750 PF02424 ApbE family M892_14760 PF01609 Transposase DDE domain M892_14760 PF02281 Transposase Tn5 dimerisation domain M892_14760 PF14706 Transposase DNA-binding M892_14765 PF00072 Response regulator receiver domain M892_14765 PF00990 Diguanylate cyclase, GGDEF domain M892_14770 PF11798 IMS family HHH motif M892_14770 PF11799 impB/mucB/samB family C-terminal domain M892_14770 PF00817 impB/mucB/samB family M892_14775 PF00270 DEAD/DEAH box helicase M892_14775 PF00271 Helicase conserved C-terminal domain M892_14775 PF00570 HRDC domain M892_14775 PF16124 RecQ zinc-binding M892_14775 PF09382 RQC domain M892_14780 PF01272 Transcription elongation factor, GreA/GreB, C-term M892_14780 PF03449 Transcription elongation factor, N-terminal M892_14790 PF13006 Insertion element 4 transposase N-terminal M892_14790 PF01609 Transposase DDE domain M892_14795 PF00704 Glycosyl hydrolases family 18 M892_14795 PF00041 Fibronectin type III domain M892_14800 PF00209 Sodium:neurotransmitter symporter family M892_14810 PF06786 Uncharacterised protein family (UPF0253) M892_14820 PF03129 Anticodon binding domain M892_14820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M892_14820 PF04073 Aminoacyl-tRNA editing domain M892_14825 PF01980 tRNA-methyltransferase O M892_14825 PF18389 TrmO C-terminal domain M892_14830 PF01197 Ribosomal protein L31 M892_14835 PF03806 AbgT putative transporter family M892_14840 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M892_14865 PF04287 tRNA pseudouridine synthase C M892_14870 PF00849 RNA pseudouridylate synthase M892_14875 PF11944 Protein of unknown function (DUF3461) M892_14880 PF01842 ACT domain M892_14880 PF08335 GlnD PII-uridylyltransferase M892_14880 PF01966 HD domain M892_14880 PF01909 Nucleotidyltransferase domain M892_14885 PF00557 Metallopeptidase family M24 M892_14890 PF00318 Ribosomal protein S2 M892_14895 PF00889 Elongation factor TS M892_14900 PF00696 Amino acid kinase family M892_14905 PF01765 Ribosome recycling factor M892_14910 PF01255 Putative undecaprenyl diphosphate synthase M892_14920 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M892_14920 PF13288 DXP reductoisomerase C-terminal domain M892_14920 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M892_14925 PF02163 Peptidase family M50 M892_14925 PF17820 PDZ domain M892_14930 PF01103 Surface antigen M892_14930 PF07244 Surface antigen variable number repeat M892_14935 PF03938 Outer membrane protein (OmpH-like) M892_14940 PF00132 Bacterial transferase hexapeptide (six repeats) M892_14940 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M892_14945 PF07977 FabA-like domain M892_14950 PF00132 Bacterial transferase hexapeptide (six repeats) M892_14950 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M892_14955 PF02684 Lipid-A-disaccharide synthetase M892_14960 PF01351 Ribonuclease HII M892_14965 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M892_14965 PF07733 Bacterial DNA polymerase III alpha NTPase domain M892_14965 PF14579 Helix-hairpin-helix motif M892_14965 PF02811 PHP domain M892_14965 PF01336 OB-fold nucleic acid binding domain M892_14970 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M892_14975 PF09179 TilS substrate binding domain M892_14975 PF11734 TilS substrate C-terminal domain M892_14975 PF01171 PP-loop family M892_14980 PF00034 Cytochrome c M892_14985 PF00543 Nitrogen regulatory protein P-II M892_15000 PF01464 Transglycosylase SLT domain M892_15000 PF01476 LysM domain M892_15005 PF16123 Hydroxyacylglutathione hydrolase C-terminus M892_15010 PF08241 Methyltransferase domain M892_15015 PF00075 RNase H M892_15020 PF00929 Exonuclease M892_15045 PF09317 Domain of unknown function (DUF1974) M892_15045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M892_15045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M892_15045 PF02770 Acyl-CoA dehydrogenase, middle domain M892_15050 PF13580 SIS domain M892_15055 PF13230 Glutamine amidotransferases class-II M892_15060 PF00551 Formyl transferase M892_15065 PF00586 AIR synthase related protein, N-terminal domain M892_15065 PF02769 AIR synthase related protein, C-terminal domain M892_15075 PF00860 Permease family M892_15090 PF03358 NADPH-dependent FMN reductase M892_15095 PF03960 ArsC family M892_15100 PF01435 Peptidase family M48 M892_15100 PF13181 Tetratricopeptide repeat M892_15110 PF01594 AI-2E family transporter M892_15115 PF02281 Transposase Tn5 dimerisation domain M892_15115 PF14706 Transposase DNA-binding M892_15115 PF01609 Transposase DDE domain M892_15120 PF00578 AhpC/TSA family M892_15125 PF01842 ACT domain M892_15130 PF00701 Dihydrodipicolinate synthetase family M892_15150 PF01546 Peptidase family M20/M25/M40 M892_15150 PF07687 Peptidase dimerisation domain M892_15155 PF03960 ArsC family M892_15175 PF11143 Protein of unknown function (DUF2919) M892_15180 PF04261 Dyp-type peroxidase family M892_15185 PF02281 Transposase Tn5 dimerisation domain M892_15185 PF14706 Transposase DNA-binding M892_15185 PF01609 Transposase DDE domain M892_15195 PF07196 Flagellin hook IN motif M892_15195 PF00669 Bacterial flagellin N-terminal helical region M892_15195 PF00700 Bacterial flagellin C-terminal helical region M892_15200 PF07196 Flagellin hook IN motif M892_15200 PF00669 Bacterial flagellin N-terminal helical region M892_15200 PF00700 Bacterial flagellin C-terminal helical region M892_15205 PF07196 Flagellin hook IN motif M892_15205 PF00669 Bacterial flagellin N-terminal helical region M892_15205 PF00700 Bacterial flagellin C-terminal helical region M892_15210 PF03646 FlaG protein M892_15215 PF07196 Flagellin hook IN motif M892_15215 PF07195 Flagellar hook-associated protein 2 C-terminus M892_15215 PF02465 Flagellar hook-associated protein 2 N-terminus M892_15225 PF02561 Flagellar protein FliS M892_15230 PF02954 Bacterial regulatory protein, Fis family M892_15230 PF00072 Response regulator receiver domain M892_15230 PF00158 Sigma-54 interaction domain M892_15235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_15235 PF00512 His Kinase A (phospho-acceptor) domain M892_15240 PF00072 Response regulator receiver domain M892_15240 PF00158 Sigma-54 interaction domain M892_15240 PF02954 Bacterial regulatory protein, Fis family M892_15245 PF02049 Flagellar hook-basal body complex protein FliE M892_15250 PF08345 Flagellar M-ring protein C-terminal M892_15250 PF01514 Secretory protein of YscJ/FliF family M892_15255 PF14842 FliG N-terminal domain M892_15255 PF14841 FliG middle domain M892_15255 PF01706 FliG C-terminal domain M892_15265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M892_15265 PF18269 T3SS EscN ATPase C-terminal domain M892_15290 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M892_15290 PF02154 Flagellar motor switch protein FliM M892_15295 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M892_15300 PF04347 Flagellar biosynthesis protein, FliO M892_15305 PF00813 FliP family M892_15310 PF01313 Bacterial export proteins, family 3 M892_15315 PF01311 Bacterial export proteins, family 1 M892_15320 PF01312 FlhB HrpN YscU SpaS Family M892_15325 PF00771 FHIPEP family M892_15330 PF00448 SRP54-type protein, GTPase domain M892_15335 PF10609 NUBPL iron-transfer P-loop NTPase M892_15340 PF04542 Sigma-70 region 2 M892_15340 PF04545 Sigma-70, region 4 M892_15340 PF04539 Sigma-70 region 3 M892_15345 PF00072 Response regulator receiver domain M892_15350 PF04344 Chemotaxis phosphatase, CheZ M892_15355 PF02895 Signal transducing histidine kinase, homodimeric domain M892_15355 PF01584 CheW-like domain M892_15355 PF01627 Hpt domain M892_15355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_15355 PF07194 P2 response regulator binding domain M892_15360 PF00072 Response regulator receiver domain M892_15360 PF01339 CheB methylesterase M892_15365 PF13614 AAA domain M892_15375 PF01584 CheW-like domain M892_15385 PF00005 ABC transporter M892_15390 PF03379 CcmB protein M892_15395 PF01578 Cytochrome C assembly protein M892_15405 PF03100 CcmE M892_15410 PF01578 Cytochrome C assembly protein M892_15410 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M892_15415 PF08534 Redoxin M892_15420 PF03918 Cytochrome C biogenesis protein M892_15425 PF03918 Cytochrome C biogenesis protein M892_15430 PF04333 MlaA lipoprotein M892_15435 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M892_15440 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M892_15450 PF08281 Sigma-70, region 4 M892_15450 PF04542 Sigma-70 region 2 M892_15455 PF00108 Thiolase, N-terminal domain M892_15455 PF02803 Thiolase, C-terminal domain M892_15460 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_15465 PF16187 Middle or third domain of peptidase_M16 M892_15465 PF00675 Insulinase (Peptidase family M16) M892_15465 PF05193 Peptidase M16 inactive domain M892_15470 PF00300 Histidine phosphatase superfamily (branch 1) M892_15475 PF01713 Smr domain M892_15480 PF05175 Methyltransferase small domain M892_15485 PF01264 Chorismate synthase M892_15490 PF01609 Transposase DDE domain M892_15490 PF02281 Transposase Tn5 dimerisation domain M892_15490 PF14706 Transposase DNA-binding M892_15495 PF03458 UPF0126 domain M892_15500 PF04315 Elongation factor P hydroxylase M892_15505 PF08891 YfcL protein M892_15520 PF01266 FAD dependent oxidoreductase M892_15520 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M892_15525 PF00109 Beta-ketoacyl synthase, N-terminal domain M892_15525 PF02801 Beta-ketoacyl synthase, C-terminal domain M892_15530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M892_15530 PF11890 Domain of unknown function (DUF3410) M892_15530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M892_15535 PF02774 Semialdehyde dehydrogenase, dimerisation domain M892_15535 PF01118 Semialdehyde dehydrogenase, NAD binding domain M892_15545 PF01416 tRNA pseudouridine synthase M892_15555 PF01039 Carboxyl transferase domain M892_15555 PF17848 Acetyl-coA carboxylase zinc finger domain M892_15560 PF08245 Mur ligase middle domain M892_15560 PF02875 Mur ligase family, glutamate ligase domain M892_15565 PF05036 Sporulation related domain M892_15570 PF02674 Colicin V production protein M892_15575 PF00156 Phosphoribosyl transferase domain M892_15580 PF01609 Transposase DDE domain M892_15580 PF13006 Insertion element 4 transposase N-terminal M892_15585 PF03466 LysR substrate binding domain M892_15585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_15590 PF00072 Response regulator receiver domain M892_15600 PF04304 Protein of unknown function (DUF454) M892_15605 PF00156 Phosphoribosyl transferase domain M892_15610 PF12169 DNA polymerase III subunits gamma and tau domain III M892_15610 PF12170 DNA polymerase III tau subunit V interacting with alpha M892_15615 PF02575 YbaB/EbfC DNA-binding family M892_15620 PF13662 Toprim domain M892_15620 PF02132 RecR protein M892_15625 PF00230 Major intrinsic protein M892_15630 PF01042 Endoribonuclease L-PSP M892_15635 PF03313 Serine dehydratase alpha chain M892_15640 PF13309 HTH domain M892_15640 PF08348 YheO-like PAS domain M892_15645 PF03692 Putative zinc- or iron-chelating domain M892_15650 PF03692 Putative zinc- or iron-chelating domain M892_15705 PF04226 Transglycosylase associated protein M892_15710 PF06826 Predicted Permease Membrane Region M892_15715 PF00282 Pyridoxal-dependent decarboxylase conserved domain M892_15720 PF00924 Mechanosensitive ion channel M892_15720 PF05552 Conserved TM helix M892_15730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_15740 PF13276 HTH-like domain M892_15740 PF13333 Integrase core domain M892_15740 PF00665 Integrase core domain M892_15745 PF00245 Alkaline phosphatase M892_15750 PF02028 BCCT, betaine/carnitine/choline family transporter M892_15765 PF13847 Methyltransferase domain M892_15770 PF01156 Inosine-uridine preferring nucleoside hydrolase M892_15780 PF01263 Aldose 1-epimerase M892_15785 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M892_15785 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M892_15790 PF01641 SelR domain M892_15800 PF07023 Protein of unknown function (DUF1315) M892_15805 PF17763 Glutaminase/Asparaginase C-terminal domain M892_15805 PF00710 Asparaginase, N-terminal M892_15810 PF01343 Peptidase family S49 M892_15815 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_15815 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M892_15820 PF00881 Nitroreductase family M892_15825 PF01131 DNA topoisomerase M892_15825 PF01751 Toprim domain M892_15840 PF00106 short chain dehydrogenase M892_15850 PF00850 Histone deacetylase domain M892_15860 PF05987 Bacterial protein of unknown function (DUF898) M892_15870 PF13006 Insertion element 4 transposase N-terminal M892_15870 PF01609 Transposase DDE domain M892_15880 PF11893 Domain of unknown function (DUF3413) M892_15880 PF00884 Sulfatase M892_15885 PF07208 Protein of unknown function (DUF1414) M892_15890 PF04245 37-kD nucleoid-associated bacterial protein M892_15895 PF01609 Transposase DDE domain M892_15895 PF13006 Insertion element 4 transposase N-terminal M892_15910 PF03553 Na+/H+ antiporter family M892_15915 PF01118 Semialdehyde dehydrogenase, NAD binding domain M892_15915 PF02774 Semialdehyde dehydrogenase, dimerisation domain M892_15920 PF00027 Cyclic nucleotide-binding domain M892_15920 PF00520 Ion transport protein M892_15925 PF01914 MarC family integral membrane protein M892_15930 PF00171 Aldehyde dehydrogenase family M892_15930 PF00465 Iron-containing alcohol dehydrogenase M892_15935 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_15950 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M892_15950 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M892_15955 PF00462 Glutaredoxin M892_15960 PF13737 Transposase DDE domain M892_15970 PF00140 Sigma-70 factor, region 1.2 M892_15970 PF04539 Sigma-70 region 3 M892_15970 PF04545 Sigma-70, region 4 M892_15970 PF04542 Sigma-70 region 2 M892_15990 PF00072 Response regulator receiver domain M892_15990 PF00990 Diguanylate cyclase, GGDEF domain M892_16005 PF13005 zinc-finger binding domain of transposase IS66 M892_16005 PF13007 Transposase C of IS166 homeodomain M892_16005 PF03050 Transposase IS66 family M892_16005 PF13817 IS66 C-terminal element M892_16010 PF13737 Transposase DDE domain M892_16015 PF03135 CagE, TrbE, VirB family, component of type IV transporter system M892_16050 PF13726 Na+-H+ antiporter family M892_16050 PF03553 Na+/H+ antiporter family M892_16055 PF00929 Exonuclease M892_16060 PF18393 MotY N-terminal domain M892_16060 PF00691 OmpA family M892_16065 PF10952 Protein of unknown function (DUF2753) M892_16070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_16075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_16080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_16100 PF13817 IS66 C-terminal element M892_16100 PF13007 Transposase C of IS166 homeodomain M892_16100 PF03050 Transposase IS66 family M892_16100 PF13005 zinc-finger binding domain of transposase IS66 M892_16125 PF10576 Iron-sulfur binding domain of endonuclease III M892_16125 PF00633 Helix-hairpin-helix motif M892_16125 PF00730 HhH-GPD superfamily base excision DNA repair protein M892_16130 PF02508 Rnf-Nqr subunit, membrane protein M892_16135 PF04205 FMN-binding domain M892_16140 PF03116 NQR2, RnfD, RnfE family M892_16145 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M892_16145 PF12838 4Fe-4S dicluster domain M892_16145 PF13375 RnfC Barrel sandwich hybrid domain M892_16145 PF10531 SLBB domain M892_16150 PF04060 Putative Fe-S cluster M892_16155 PF02508 Rnf-Nqr subunit, membrane protein M892_16160 PF02901 Pyruvate formate lyase-like M892_16160 PF01228 Glycine radical M892_16170 PF00271 Helicase conserved C-terminal domain M892_16170 PF12344 Ultra-violet resistance protein B M892_16170 PF04851 Type III restriction enzyme, res subunit M892_16170 PF02151 UvrB/uvrC motif M892_16170 PF17757 UvrB interaction domain M892_16180 PF02954 Bacterial regulatory protein, Fis family M892_16180 PF00158 Sigma-54 interaction domain M892_16180 PF00072 Response regulator receiver domain M892_16185 PF01627 Hpt domain M892_16195 PF13007 Transposase C of IS166 homeodomain M892_16195 PF13817 IS66 C-terminal element M892_16195 PF03050 Transposase IS66 family M892_16195 PF13005 zinc-finger binding domain of transposase IS66 M892_16200 PF01933 Uncharacterised protein family UPF0052 M892_16205 PF04055 Radical SAM superfamily M892_16205 PF06463 Molybdenum Cofactor Synthesis C M892_16210 PF00994 Probable molybdopterin binding domain M892_16215 PF01967 MoaC family M892_16220 PF02597 ThiS family M892_16225 PF02391 MoaE protein M892_16230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M892_16235 PF00528 Binding-protein-dependent transport system inner membrane component M892_16240 PF00528 Binding-protein-dependent transport system inner membrane component M892_16240 PF12911 N-terminal TM domain of oligopeptide transport permease C M892_16250 PF13409 Glutathione S-transferase, N-terminal domain M892_16255 PF07085 DRTGG domain M892_16255 PF01515 Phosphate acetyl/butaryl transferase M892_16260 PF00871 Acetokinase family M892_16265 PF04217 Protein of unknown function, DUF412 M892_16275 PF02653 Branched-chain amino acid transport system / permease component M892_16280 PF00005 ABC transporter M892_16295 PF00072 Response regulator receiver domain M892_16295 PF00990 Diguanylate cyclase, GGDEF domain M892_16300 PF01207 Dihydrouridine synthase (Dus) M892_16305 PF02810 SEC-C motif M892_16305 PF07517 SecA DEAD-like domain M892_16305 PF01043 SecA preprotein cross-linking domain M892_16305 PF07516 SecA Wing and Scaffold domain M892_16310 PF02600 Disulfide bond formation protein DsbB M892_16315 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M892_16320 PF07840 FadR C-terminal domain M892_16320 PF00392 Bacterial regulatory proteins, gntR family M892_16330 PF09334 tRNA synthetases class I (M) M892_16330 PF01588 Putative tRNA binding domain M892_16335 PF10609 NUBPL iron-transfer P-loop NTPase M892_16340 PF00485 Phosphoribulokinase / Uridine kinase family M892_16350 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M892_16350 PF12557 Cob(I)alamin adenosyltransferase N terminal M892_16355 PF01451 Low molecular weight phosphotyrosine protein phosphatase M892_16360 PF01740 STAS domain M892_16360 PF00916 Sulfate permease family M892_16365 PF14706 Transposase DNA-binding M892_16365 PF01609 Transposase DDE domain M892_16365 PF02281 Transposase Tn5 dimerisation domain M892_16370 PF12111 Polyribonucleotide phosphorylase C terminal M892_16370 PF00575 S1 RNA binding domain M892_16370 PF10150 Ribonuclease E/G family M892_16375 PF00849 RNA pseudouridylate synthase M892_16375 PF01479 S4 domain M892_16385 PF02371 Transposase IS116/IS110/IS902 family M892_16385 PF01548 Transposase M892_16390 PF02545 Maf-like protein M892_16395 PF02620 Large ribosomal RNA subunit accumulation protein YceD M892_16400 PF01783 Ribosomal L32p protein family M892_16405 PF02504 Fatty acid synthesis protein M892_16410 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M892_16410 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M892_16415 PF00698 Acyl transferase domain M892_16425 PF00550 Phosphopantetheine attachment site M892_16430 PF00109 Beta-ketoacyl synthase, N-terminal domain M892_16430 PF02801 Beta-ketoacyl synthase, C-terminal domain M892_16435 PF01063 Amino-transferase class IV M892_16440 PF02618 YceG-like family M892_16445 PF02223 Thymidylate kinase M892_16450 PF09115 DNA polymerase III, delta subunit, C terminal M892_16455 PF01026 TatD related DNase M892_16460 PF00367 phosphotransferase system, EIIB M892_16460 PF02378 Phosphotransferase system, EIIC M892_16470 PF13006 Insertion element 4 transposase N-terminal M892_16470 PF01609 Transposase DDE domain M892_16480 PF00209 Sodium:neurotransmitter symporter family M892_16495 PF01734 Patatin-like phospholipase M892_16520 PF00665 Integrase core domain M892_16520 PF13333 Integrase core domain M892_16520 PF13276 HTH-like domain M892_16525 PF09134 Invasin, domain 3 M892_16525 PF11924 Inverse autotransporter, beta-domain M892_16525 PF07979 Intimin C-type lectin domain M892_16525 PF02369 Bacterial Ig-like domain (group 1) M892_16555 PF00135 Carboxylesterase family M892_16565 PF13737 Transposase DDE domain M892_16580 PF02887 Pyruvate kinase, alpha/beta domain M892_16580 PF00224 Pyruvate kinase, barrel domain M892_16585 PF13817 IS66 C-terminal element M892_16585 PF13007 Transposase C of IS166 homeodomain M892_16585 PF13005 zinc-finger binding domain of transposase IS66 M892_16585 PF03050 Transposase IS66 family M892_16600 PF00480 ROK family M892_16605 PF01584 CheW-like domain M892_16605 PF00072 Response regulator receiver domain M892_16610 PF14579 Helix-hairpin-helix motif M892_16610 PF02811 PHP domain M892_16610 PF07733 Bacterial DNA polymerase III alpha NTPase domain M892_16610 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M892_16610 PF01336 OB-fold nucleic acid binding domain M892_16625 PF00106 short chain dehydrogenase M892_16630 PF01343 Peptidase family S49 M892_16630 PF08496 Peptidase family S49 N-terminal M892_16635 PF02224 Cytidylate kinase M892_16640 PF00575 S1 RNA binding domain M892_16645 PF00216 Bacterial DNA-binding protein M892_16650 PF06305 Lipopolysaccharide assembly protein A domain M892_16655 PF18073 Rubredoxin metal binding domain M892_16660 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M892_16665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M892_16680 PF03886 ABC-type transport auxiliary lipoprotein component M892_16685 PF02470 MlaD protein M892_16690 PF04403 Paraquat-inducible protein A M892_16695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_16695 PF03466 LysR substrate binding domain M892_16705 PF02683 Cytochrome C biogenesis protein transmembrane region M892_16705 PF11412 Disulphide bond corrector protein DsbC M892_16720 PF05958 tRNA (Uracil-5-)-methyltransferase M892_16720 PF01938 TRAM domain M892_16745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_16755 PF02687 FtsX-like permease family M892_16755 PF00005 ABC transporter M892_16755 PF12704 MacB-like periplasmic core domain M892_16760 PF00005 ABC transporter M892_16760 PF02687 FtsX-like permease family M892_16760 PF12704 MacB-like periplasmic core domain M892_16765 PF12704 MacB-like periplasmic core domain M892_16765 PF00005 ABC transporter M892_16765 PF02687 FtsX-like permease family M892_16775 PF03543 Yersinia/Haemophilus virulence surface antigen M892_16785 PF11490 DNA polymerase III polC-type N-terminus II M892_16785 PF07733 Bacterial DNA polymerase III alpha NTPase domain M892_16785 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M892_16785 PF14579 Helix-hairpin-helix motif M892_16785 PF02811 PHP domain M892_16785 PF00929 Exonuclease M892_16795 PF02631 RecX family M892_16805 PF02954 Bacterial regulatory protein, Fis family M892_16845 PF00665 Integrase core domain M892_16845 PF13276 HTH-like domain M892_16845 PF13333 Integrase core domain M892_16850 PF02371 Transposase IS116/IS110/IS902 family M892_16850 PF01548 Transposase M892_16860 PF00106 short chain dehydrogenase M892_16890 PF01717 Cobalamin-independent synthase, Catalytic domain M892_16890 PF08267 Cobalamin-independent synthase, N-terminal domain M892_16895 PF02371 Transposase IS116/IS110/IS902 family M892_16895 PF01548 Transposase M892_16925 PF00672 HAMP domain M892_16925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_16925 PF00512 His Kinase A (phospho-acceptor) domain M892_16930 PF00072 Response regulator receiver domain M892_16930 PF00486 Transcriptional regulatory protein, C terminal M892_16935 PF00535 Glycosyl transferase family 2 M892_16940 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M892_16950 PF00672 HAMP domain M892_16950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_16955 PF02668 Taurine catabolism dioxygenase TauD, TfdA family M892_16965 PF08348 YheO-like PAS domain M892_16965 PF13309 HTH domain M892_16970 PF01042 Endoribonuclease L-PSP M892_16975 PF00375 Sodium:dicarboxylate symporter family M892_16980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M892_16980 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_16995 PF11842 Domain of unknown function (DUF3362) M892_16995 PF04055 Radical SAM superfamily M892_16995 PF08497 Radical SAM N-terminal M892_17000 PF00563 EAL domain M892_17000 PF00498 FHA domain M892_17000 PF00990 Diguanylate cyclase, GGDEF domain M892_17015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_17015 PF03466 LysR substrate binding domain M892_17020 PF01717 Cobalamin-independent synthase, Catalytic domain M892_17020 PF08267 Cobalamin-independent synthase, N-terminal domain M892_17030 PF03795 YCII-related domain M892_17035 PF03061 Thioesterase superfamily M892_17040 PF04279 Intracellular septation protein A M892_17050 PF00072 Response regulator receiver domain M892_17050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_17055 PF17327 Acyl homoserine lactone synthase M892_17060 PF00375 Sodium:dicarboxylate symporter family M892_17065 PF00290 Tryptophan synthase alpha chain M892_17070 PF00291 Pyridoxal-phosphate dependent enzyme M892_17075 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M892_17075 PF00218 Indole-3-glycerol phosphate synthase M892_17080 PF00591 Glycosyl transferase family, a/b domain M892_17080 PF02885 Glycosyl transferase family, helical bundle domain M892_17085 PF00117 Glutamine amidotransferase class-I M892_17090 PF04715 Anthranilate synthase component I, N terminal region M892_17090 PF00425 chorismate binding enzyme M892_17095 PF08056 Tryptophan operon leader peptide M892_17100 PF02811 PHP domain M892_17105 PF01300 Telomere recombination M892_17115 PF00849 RNA pseudouridylate synthase M892_17115 PF01479 S4 domain M892_17120 PF04269 Protein of unknown function, DUF440 M892_17125 PF01132 Elongation factor P (EF-P) OB domain M892_17125 PF08207 Elongation factor P (EF-P) KOW-like domain M892_17125 PF09285 Elongation factor P, C-terminal M892_17135 PF03104 DNA polymerase family B, exonuclease domain M892_17135 PF00136 DNA polymerase family B M892_17140 PF00072 Response regulator receiver domain M892_17140 PF00196 Bacterial regulatory proteins, luxR family M892_17145 PF01066 CDP-alcohol phosphatidyltransferase M892_17160 PF00202 Aminotransferase class-III M892_17165 PF16653 Saccharopine dehydrogenase C-terminal domain M892_17165 PF03435 Saccharopine dehydrogenase NADP binding domain M892_17170 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M892_17190 PF02464 Competence-damaged protein M892_17190 PF00994 Probable molybdopterin binding domain M892_17200 PF00268 Ribonucleotide reductase, small chain M892_17205 PF03477 ATP cone domain M892_17205 PF02867 Ribonucleotide reductase, barrel domain M892_17205 PF00317 Ribonucleotide reductase, all-alpha domain M892_17220 PF03989 DNA gyrase C-terminal domain, beta-propeller M892_17220 PF00521 DNA gyrase/topoisomerase IV, subunit A M892_17235 PF02335 Cytochrome c552 M892_17245 PF13247 4Fe-4S dicluster domain M892_17250 PF13247 4Fe-4S dicluster domain M892_17255 PF03916 Polysulphide reductase, NrfD M892_17260 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M892_17260 PF01578 Cytochrome C assembly protein M892_17265 PF08534 Redoxin M892_17270 PF03918 Cytochrome C biogenesis protein M892_17280 PF00925 GTP cyclohydrolase II M892_17305 PF03734 L,D-transpeptidase catalytic domain M892_17305 PF01471 Putative peptidoglycan binding domain M892_17310 PF05951 Bacterial protein of unknown function (DUF882) M892_17315 PF00753 Metallo-beta-lactamase superfamily M892_17725 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_17730 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M892_17740 PF03600 Citrate transporter M892_17765 PF13007 Transposase C of IS166 homeodomain M892_17765 PF13005 zinc-finger binding domain of transposase IS66 M892_17765 PF13817 IS66 C-terminal element M892_17765 PF03050 Transposase IS66 family M892_17825 PF03050 Transposase IS66 family M892_17825 PF13817 IS66 C-terminal element M892_17825 PF13007 Transposase C of IS166 homeodomain M892_17825 PF13005 zinc-finger binding domain of transposase IS66 M892_17830 PF13358 DDE superfamily endonuclease M892_17860 PF13817 IS66 C-terminal element M892_17860 PF13007 Transposase C of IS166 homeodomain M892_17860 PF13005 zinc-finger binding domain of transposase IS66 M892_17860 PF03050 Transposase IS66 family M892_17865 PF01695 IstB-like ATP binding protein M892_17875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M892_17875 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M892_17875 PF03129 Anticodon binding domain M892_17875 PF02824 TGS domain M892_17895 PF08329 Chitinase A, N-terminal domain M892_17895 PF00704 Glycosyl hydrolases family 18 M892_17905 PF06865 Pyrimidine/purine nucleoside phosphorylase M892_17910 PF13006 Insertion element 4 transposase N-terminal M892_17910 PF01609 Transposase DDE domain M892_17920 PF00990 Diguanylate cyclase, GGDEF domain M892_17920 PF00563 EAL domain M892_17925 PF13358 DDE superfamily endonuclease M892_17935 PF14706 Transposase DNA-binding M892_17935 PF01609 Transposase DDE domain M892_17935 PF02281 Transposase Tn5 dimerisation domain M892_17945 PF00356 Bacterial regulatory proteins, lacI family M892_17960 PF00528 Binding-protein-dependent transport system inner membrane component M892_17965 PF00528 Binding-protein-dependent transport system inner membrane component M892_17970 PF00232 Glycosyl hydrolase family 1 M892_17975 PF00005 ABC transporter M892_17975 PF17912 MalK OB fold domain M892_17980 PF00356 Bacterial regulatory proteins, lacI family M892_17985 PF01554 MatE M892_17990 PF00849 RNA pseudouridylate synthase M892_18005 PF17152 Periplasmic sensor domain M892_18005 PF00990 Diguanylate cyclase, GGDEF domain M892_18015 PF05656 Protein of unknown function (DUF805) M892_18025 PF00756 Putative esterase M892_18030 PF00107 Zinc-binding dehydrogenase M892_18030 PF08240 Alcohol dehydrogenase GroES-like domain M892_18035 PF00797 N-acetyltransferase M892_18050 PF03466 LysR substrate binding domain M892_18050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_18075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_18075 PF03466 LysR substrate binding domain M892_18080 PF00326 Prolyl oligopeptidase family M892_18085 PF01810 LysE type translocator M892_18090 PF01037 Lrp/AsnC ligand binding domain M892_18100 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M892_18100 PF18416 N-acetylglucosamine binding protein domain 2 M892_18110 PF00893 Small Multidrug Resistance protein M892_18125 PF13599 Pentapeptide repeats (9 copies) M892_18130 PF03922 OmpW family M892_18135 PF13533 Biotin-lipoyl like M892_18140 PF07690 Major Facilitator Superfamily M892_18160 PF01204 Trehalase M892_18175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_18180 PF03974 Ecotin M892_18215 PF13817 IS66 C-terminal element M892_18215 PF13007 Transposase C of IS166 homeodomain M892_18215 PF13005 zinc-finger binding domain of transposase IS66 M892_18215 PF03050 Transposase IS66 family M892_18250 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_18265 PF05651 Putative sugar diacid recognition M892_18265 PF13556 PucR C-terminal helix-turn-helix domain M892_18265 PF17853 GGDEF-like domain M892_18270 PF02595 Glycerate kinase family M892_18275 PF07690 Major Facilitator Superfamily M892_18295 PF00155 Aminotransferase class I and II M892_18295 PF00392 Bacterial regulatory proteins, gntR family M892_18350 PF03264 NapC/NirT cytochrome c family, N-terminal region M892_18355 PF18364 Molybdopterin oxidoreductase N-terminal domain M892_18355 PF01568 Molydopterin dinucleotide binding domain M892_18355 PF00384 Molybdopterin oxidoreductase M892_18360 PF01569 PAP2 superfamily M892_18365 PF02581 Thiamine monophosphate synthase M892_18370 PF02110 Hydroxyethylthiazole kinase family M892_18375 PF03070 TENA/THI-4/PQQC family M892_18380 PF09084 NMT1/THI5 like M892_18385 PF00528 Binding-protein-dependent transport system inner membrane component M892_18390 PF00005 ABC transporter M892_18395 PF08543 Phosphomethylpyrimidine kinase M892_18400 PF01523 Putative modulator of DNA gyrase M892_18405 PF01523 Putative modulator of DNA gyrase M892_18410 PF04013 Putative SAM-dependent RNA methyltransferase M892_18470 PF03050 Transposase IS66 family M892_18470 PF13817 IS66 C-terminal element M892_18470 PF13007 Transposase C of IS166 homeodomain M892_18470 PF13005 zinc-finger binding domain of transposase IS66 M892_18480 PF00589 Phage integrase family M892_18480 PF02899 Phage integrase, N-terminal SAM-like domain M892_18485 PF13737 Transposase DDE domain M892_18510 PF00589 Phage integrase family M892_18510 PF02899 Phage integrase, N-terminal SAM-like domain M892_18525 PF02384 N-6 DNA Methylase M892_18525 PF12161 HsdM N-terminal domain M892_18545 PF18766 SWI2/SNF2 ATPase M892_18545 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) M892_18545 PF11867 Domain of unknown function (DUF3387) M892_18565 PF02631 RecX family M892_18575 PF02954 Bacterial regulatory protein, Fis family M892_18595 PF03050 Transposase IS66 family M892_18595 PF13817 IS66 C-terminal element M892_18595 PF13007 Transposase C of IS166 homeodomain M892_18595 PF13005 zinc-finger binding domain of transposase IS66 M892_18615 PF13817 IS66 C-terminal element M892_18615 PF13007 Transposase C of IS166 homeodomain M892_18615 PF13005 zinc-finger binding domain of transposase IS66 M892_18615 PF03050 Transposase IS66 family M892_18640 PF02371 Transposase IS116/IS110/IS902 family M892_18640 PF01548 Transposase M892_18660 PF02281 Transposase Tn5 dimerisation domain M892_18660 PF01609 Transposase DDE domain M892_18660 PF14706 Transposase DNA-binding M892_18670 PF10928 Protein of unknown function (DUF2810) M892_18680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M892_18680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M892_18690 PF03009 Glycerophosphoryl diester phosphodiesterase family M892_18695 PF00486 Transcriptional regulatory protein, C terminal M892_18695 PF00072 Response regulator receiver domain M892_18700 PF00512 His Kinase A (phospho-acceptor) domain M892_18700 PF16750 Sensor domain of 2-component histidine kinase M892_18700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_18700 PF00672 HAMP domain M892_18705 PF00593 TonB dependent receptor M892_18705 PF07715 TonB-dependent Receptor Plug Domain M892_18715 PF01618 MotA/TolQ/ExbB proton channel family M892_18720 PF01618 MotA/TolQ/ExbB proton channel family M892_18725 PF02472 Biopolymer transport protein ExbD/TolR M892_18750 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_18780 PF01297 Zinc-uptake complex component A periplasmic M892_18785 PF00005 ABC transporter M892_18790 PF00950 ABC 3 transport family M892_18805 PF00326 Prolyl oligopeptidase family M892_18805 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M892_18810 PF07690 Major Facilitator Superfamily M892_18815 PF00491 Arginase family M892_18820 PF17810 Arginine decarboxylase helical bundle domain M892_18820 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M892_18820 PF17944 Arginine decarboxylase C-terminal helical extension M892_18825 PF00753 Metallo-beta-lactamase superfamily M892_18830 PF08443 RimK-like ATP-grasp domain M892_18830 PF18030 RimK PreATP-grasp domain M892_18835 PF08443 RimK-like ATP-grasp domain M892_18835 PF18030 RimK PreATP-grasp domain M892_18875 PF00232 Glycosyl hydrolase family 1 M892_18880 PF08448 PAS fold M892_18880 PF13426 PAS domain M892_18880 PF00072 Response regulator receiver domain M892_18880 PF00512 His Kinase A (phospho-acceptor) domain M892_18880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_18885 PF00072 Response regulator receiver domain M892_18885 PF00158 Sigma-54 interaction domain M892_18885 PF02954 Bacterial regulatory protein, Fis family M892_18890 PF05525 Branched-chain amino acid transport protein M892_18910 PF01266 FAD dependent oxidoreductase M892_18925 PF03116 NQR2, RnfD, RnfE family M892_18930 PF01212 Beta-eliminating lyase M892_18955 PF14706 Transposase DNA-binding M892_18955 PF02281 Transposase Tn5 dimerisation domain M892_18955 PF01609 Transposase DDE domain M892_18960 PF00483 Nucleotidyl transferase M892_18980 PF00563 EAL domain M892_18980 PF03707 Bacterial signalling protein N terminal repeat M892_18980 PF00990 Diguanylate cyclase, GGDEF domain M892_18995 PF00990 Diguanylate cyclase, GGDEF domain M892_19000 PF00875 DNA photolyase M892_19000 PF03441 FAD binding domain of DNA photolyase M892_19005 PF04244 Deoxyribodipyrimidine photo-lyase-related protein M892_19020 PF01625 Peptide methionine sulfoxide reductase M892_19020 PF01641 SelR domain M892_19025 PF02566 OsmC-like protein M892_19030 PF14602 Hexapeptide repeat of succinyl-transferase M892_19030 PF12464 Maltose acetyltransferase M892_19055 PF03466 LysR substrate binding domain M892_19055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_19060 PF13419 Haloacid dehalogenase-like hydrolase M892_19065 PF13737 Transposase DDE domain M892_19070 PF13358 DDE superfamily endonuclease M892_19110 PF02706 Chain length determinant protein M892_19110 PF13614 AAA domain M892_19110 PF13807 G-rich domain on putative tyrosine kinase M892_19115 PF01451 Low molecular weight phosphotyrosine protein phosphatase M892_19120 PF18412 Outer-membrane lipoprotein Wza C-terminal domain M892_19120 PF10531 SLBB domain M892_19120 PF02563 Polysaccharide biosynthesis/export protein M892_19125 PF00881 Nitroreductase family M892_19130 PF01914 MarC family integral membrane protein M892_19135 PF01734 Patatin-like phospholipase M892_19145 PF02469 Fasciclin domain M892_19150 PF03441 FAD binding domain of DNA photolyase M892_19150 PF00875 DNA photolyase M892_19170 PF07943 Penicillin-binding protein 5, C-terminal domain M892_19170 PF00768 D-alanyl-D-alanine carboxypeptidase M892_19180 PF03466 LysR substrate binding domain M892_19180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_19185 PF09905 DNA-binding protein VF530 M892_19195 PF00970 Oxidoreductase FAD-binding domain M892_19195 PF00175 Oxidoreductase NAD-binding domain M892_19210 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M892_19215 PF01594 AI-2E family transporter M892_19225 PF00529 HlyD membrane-fusion protein of T1SS M892_19225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_19230 PF00529 HlyD membrane-fusion protein of T1SS M892_19230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_19240 PF00892 EamA-like transporter family M892_19250 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M892_19255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_19255 PF03466 LysR substrate binding domain M892_19260 PF07690 Major Facilitator Superfamily M892_19270 PF03952 Enolase, N-terminal domain M892_19270 PF00113 Enolase, C-terminal TIM barrel domain M892_19275 PF00583 Acetyltransferase (GNAT) family M892_19285 PF00486 Transcriptional regulatory protein, C terminal M892_19285 PF00072 Response regulator receiver domain M892_19290 PF00512 His Kinase A (phospho-acceptor) domain M892_19290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_19290 PF00672 HAMP domain M892_19315 PF02567 Phenazine biosynthesis-like protein M892_19320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_19335 PF00005 ABC transporter M892_19335 PF12848 ABC transporter M892_19340 PF09905 DNA-binding protein VF530 M892_19345 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_19360 PF00581 Rhodanese-like domain M892_19365 PF01810 LysE type translocator M892_19370 PF03466 LysR substrate binding domain M892_19370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_19380 PF07971 Glycosyl hydrolase family 92 M892_19380 PF17678 Glycosyl hydrolase family 92 N-terminal domain M892_19385 PF07971 Glycosyl hydrolase family 92 M892_19385 PF17678 Glycosyl hydrolase family 92 N-terminal domain M892_19400 PF17678 Glycosyl hydrolase family 92 N-terminal domain M892_19400 PF07971 Glycosyl hydrolase family 92 M892_19425 PF13358 DDE superfamily endonuclease M892_19430 PF01641 SelR domain M892_19430 PF01625 Peptide methionine sulfoxide reductase M892_19440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_19445 PF08220 DeoR-like helix-turn-helix domain M892_19445 PF00455 DeoR C terminal sensor domain M892_19460 PF00199 Catalase M892_19460 PF06628 Catalase-related immune-responsive M892_19470 PF00080 Copper/zinc superoxide dismutase (SODC) M892_19475 PF00857 Isochorismatase family M892_19485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M892_19485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M892_19500 PF06942 GlpM protein M892_19510 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_19510 PF01464 Transglycosylase SLT domain M892_19520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_19520 PF03466 LysR substrate binding domain M892_19535 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M892_19535 PF13542 Helix-turn-helix domain of transposase family ISL3 M892_19535 PF01610 Transposase M892_19540 PF00005 ABC transporter M892_19540 PF00571 CBS domain M892_19545 PF00528 Binding-protein-dependent transport system inner membrane component M892_19555 PF00665 Integrase core domain M892_19555 PF13276 HTH-like domain M892_19555 PF13333 Integrase core domain M892_19565 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M892_19565 PF13378 Enolase C-terminal domain-like M892_19575 PF03466 LysR substrate binding domain M892_19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_19580 PF00376 MerR family regulatory protein M892_19580 PF09278 MerR, DNA binding M892_19605 PF13533 Biotin-lipoyl like M892_19610 PF00873 AcrB/AcrD/AcrF family M892_19625 PF00873 AcrB/AcrD/AcrF family M892_19645 PF02028 BCCT, betaine/carnitine/choline family transporter M892_19650 PF00703 Glycosyl hydrolases family 2 M892_19650 PF02837 Glycosyl hydrolases family 2, sugar binding domain M892_19650 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M892_19650 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 M892_19655 PF00196 Bacterial regulatory proteins, luxR family M892_19665 PF00990 Diguanylate cyclase, GGDEF domain M892_19665 PF03707 Bacterial signalling protein N terminal repeat M892_19665 PF00563 EAL domain M892_19680 PF02600 Disulfide bond formation protein DsbB M892_19695 PF13358 DDE superfamily endonuclease M892_19710 PF00579 tRNA synthetases class I (W and Y) M892_19715 PF00072 Response regulator receiver domain M892_19715 PF00196 Bacterial regulatory proteins, luxR family M892_19725 PF02896 PEP-utilising enzyme, TIM barrel domain M892_19725 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M892_19725 PF00391 PEP-utilising enzyme, mobile domain M892_19730 PF03618 Kinase/pyrophosphorylase M892_19735 PF00710 Asparaginase, N-terminal M892_19735 PF17763 Glutaminase/Asparaginase C-terminal domain M892_19740 PF00990 Diguanylate cyclase, GGDEF domain M892_19740 PF00563 EAL domain M892_19740 PF03707 Bacterial signalling protein N terminal repeat M892_19755 PF03466 LysR substrate binding domain M892_19755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_19770 PF04228 Putative neutral zinc metallopeptidase M892_19775 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) M892_19790 PF17864 RuvB AAA lid domain M892_19790 PF05491 RuvB C-terminal winged helix domain M892_19790 PF05496 Holliday junction DNA helicase RuvB P-loop domain M892_19800 PF05816 Toxic anion resistance protein (TelA) M892_19810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M892_19820 PF07690 Major Facilitator Superfamily M892_19830 PF03466 LysR substrate binding domain M892_19830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_19870 PF13007 Transposase C of IS166 homeodomain M892_19870 PF13817 IS66 C-terminal element M892_19870 PF03050 Transposase IS66 family M892_19870 PF13005 zinc-finger binding domain of transposase IS66 M892_19875 PF00271 Helicase conserved C-terminal domain M892_19875 PF00270 DEAD/DEAH box helicase M892_19920 PF00155 Aminotransferase class I and II M892_19975 PF00664 ABC transporter transmembrane region M892_19975 PF00005 ABC transporter M892_19975 PF03412 Peptidase C39 family M892_19990 PF00664 ABC transporter transmembrane region M892_19990 PF00005 ABC transporter M892_19990 PF03412 Peptidase C39 family M892_20010 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M892_20010 PF06594 Haemolysin-type calcium binding protein related domain M892_20020 PF06594 Haemolysin-type calcium binding protein related domain M892_20020 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M892_20020 PF06594 Haemolysin-type calcium binding protein related domain M892_20020 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M892_20035 PF13007 Transposase C of IS166 homeodomain M892_20035 PF03050 Transposase IS66 family M892_20035 PF13817 IS66 C-terminal element M892_20035 PF13005 zinc-finger binding domain of transposase IS66 M892_20050 PF13419 Haloacid dehalogenase-like hydrolase M892_20070 PF02798 Glutathione S-transferase, N-terminal domain M892_20075 PF02028 BCCT, betaine/carnitine/choline family transporter M892_20080 PF07943 Penicillin-binding protein 5, C-terminal domain M892_20080 PF00768 D-alanyl-D-alanine carboxypeptidase M892_20090 PF08241 Methyltransferase domain M892_20095 PF00462 Glutaredoxin M892_20095 PF08534 Redoxin M892_20105 PF00962 Adenosine/AMP deaminase M892_20125 PF00313 'Cold-shock' DNA-binding domain M892_20130 PF02678 Pirin M892_20130 PF05726 Pirin C-terminal cupin domain M892_20135 PF01734 Patatin-like phospholipase M892_20145 PF01979 Amidohydrolase family M892_20150 PF00132 Bacterial transferase hexapeptide (six repeats) M892_20155 PF07683 Cobalamin synthesis protein cobW C-terminal domain M892_20155 PF02492 CobW/HypB/UreG, nucleotide-binding domain M892_20165 PF01047 MarR family M892_20195 PF03050 Transposase IS66 family M892_20195 PF13817 IS66 C-terminal element M892_20195 PF13005 zinc-finger binding domain of transposase IS66 M892_20195 PF13007 Transposase C of IS166 homeodomain M892_20210 PF00005 ABC transporter M892_20210 PF17912 MalK OB fold domain M892_20215 PF00528 Binding-protein-dependent transport system inner membrane component M892_20220 PF00528 Binding-protein-dependent transport system inner membrane component M892_20225 PF13416 Bacterial extracellular solute-binding protein M892_20230 PF03009 Glycerophosphoryl diester phosphodiesterase family M892_20235 PF00455 DeoR C terminal sensor domain M892_20235 PF08220 DeoR-like helix-turn-helix domain M892_20240 PF01609 Transposase DDE domain M892_20240 PF13006 Insertion element 4 transposase N-terminal M892_20245 PF00582 Universal stress protein family M892_20260 PF00326 Prolyl oligopeptidase family M892_20260 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M892_20270 PF13737 Transposase DDE domain M892_20275 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_20280 PF13302 Acetyltransferase (GNAT) domain M892_20290 PF13358 DDE superfamily endonuclease M892_20295 PF03150 Di-haem cytochrome c peroxidase M892_20295 PF00034 Cytochrome c M892_20295 PF14376 Haem-binding domain M892_20310 PF00293 NUDIX domain M892_20320 PF03466 LysR substrate binding domain M892_20320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_20325 PF01810 LysE type translocator M892_20335 PF00873 AcrB/AcrD/AcrF family M892_20355 PF12838 4Fe-4S dicluster domain M892_20355 PF01568 Molydopterin dinucleotide binding domain M892_20355 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M892_20355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M892_20355 PF00384 Molybdopterin oxidoreductase M892_20375 PF00005 ABC transporter M892_20385 PF02685 Glucokinase M892_20385 PF01418 Helix-turn-helix domain, rpiR family M892_20385 PF01380 SIS domain M892_20400 PF07969 Amidohydrolase family M892_20410 PF13358 DDE superfamily endonuclease M892_20415 PF00474 Sodium:solute symporter family M892_20420 PF00294 pfkB family carbohydrate kinase M892_20425 PF01081 KDPG and KHG aldolase M892_20435 PF01081 KDPG and KHG aldolase M892_20440 PF00728 Glycosyl hydrolase family 20, catalytic domain M892_20440 PF02838 Glycosyl hydrolase family 20, domain 2 M892_20445 PF10282 Lactonase, 7-bladed beta-propeller M892_20450 PF01042 Endoribonuclease L-PSP M892_20455 PF01161 Phosphatidylethanolamine-binding protein M892_20470 PF01758 Sodium Bile acid symporter family M892_20485 PF01638 HxlR-like helix-turn-helix M892_20490 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_20540 PF03222 Tryptophan/tyrosine permease family M892_20550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_20550 PF00672 HAMP domain M892_20550 PF02743 Cache domain M892_20555 PF13358 DDE superfamily endonuclease M892_20580 PF01551 Peptidase family M23 M892_20580 PF01476 LysM domain M892_20580 PF08525 Opacity-associated protein A N-terminal motif M892_20585 PF00990 Diguanylate cyclase, GGDEF domain M892_20585 PF08447 PAS fold M892_20585 PF08448 PAS fold M892_20585 PF00563 EAL domain M892_20590 PF00005 ABC transporter M892_20595 PF12833 Helix-turn-helix domain M892_20600 PF07715 TonB-dependent Receptor Plug Domain M892_20600 PF00593 TonB dependent receptor M892_20610 PF01032 FecCD transport family M892_20615 PF03466 LysR substrate binding domain M892_20615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_20620 PF07690 Major Facilitator Superfamily M892_20635 PF00462 Glutaredoxin M892_20640 PF00892 EamA-like transporter family M892_20650 PF02281 Transposase Tn5 dimerisation domain M892_20650 PF01609 Transposase DDE domain M892_20650 PF14706 Transposase DNA-binding M892_20665 PF01557 Fumarylacetoacetate (FAA) hydrolase family M892_20685 PF01810 LysE type translocator M892_20690 PF01609 Transposase DDE domain M892_20690 PF13006 Insertion element 4 transposase N-terminal M892_20700 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M892_20700 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M892_20700 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M892_20700 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M892_20705 PF02790 Cytochrome C oxidase subunit II, transmembrane domain M892_20705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M892_20710 PF00115 Cytochrome C and Quinol oxidase polypeptide I M892_20715 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 M892_20720 PF00510 Cytochrome c oxidase subunit III M892_20740 PF02628 Cytochrome oxidase assembly protein M892_20745 PF01040 UbiA prenyltransferase family M892_20750 PF00691 OmpA family M892_20750 PF01389 OmpA-like transmembrane domain M892_20755 PF00793 DAHP synthetase I family M892_20760 PF01609 Transposase DDE domain M892_20760 PF02281 Transposase Tn5 dimerisation domain M892_20760 PF14706 Transposase DNA-binding M892_20765 PF07690 Major Facilitator Superfamily M892_20770 PF00672 HAMP domain M892_20770 PF12729 Four helix bundle sensory module for signal transduction M892_20770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_20775 PF00456 Transketolase, thiamine diphosphate binding domain M892_20775 PF02780 Transketolase, C-terminal domain M892_20775 PF02779 Transketolase, pyrimidine binding domain M892_20780 PF00923 Transaldolase/Fructose-6-phosphate aldolase M892_20790 PF08329 Chitinase A, N-terminal domain M892_20790 PF00704 Glycosyl hydrolases family 18 M892_20795 PF00563 EAL domain M892_20795 PF03707 Bacterial signalling protein N terminal repeat M892_20795 PF00990 Diguanylate cyclase, GGDEF domain M892_20800 PF00581 Rhodanese-like domain M892_20810 PF13333 Integrase core domain M892_20810 PF00665 Integrase core domain M892_20810 PF13276 HTH-like domain M892_20815 PF01527 Transposase M892_20825 PF05893 Acyl-CoA reductase (LuxC) M892_20830 PF02273 Acyl transferase M892_20835 PF00296 Luciferase-like monooxygenase M892_20840 PF00296 Luciferase-like monooxygenase M892_20845 PF04443 Acyl-protein synthetase, LuxE M892_20850 PF00175 Oxidoreductase NAD-binding domain M892_20855 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M892_20860 PF00899 ThiF family M892_20865 PF03454 MoeA C-terminal region (domain IV) M892_20865 PF00994 Probable molybdopterin binding domain M892_20865 PF03453 MoeA N-terminal region (domain I and II) M892_20870 PF01227 GTP cyclohydrolase I M892_20880 PF00654 Voltage gated chloride channel M892_20895 PF00248 Aldo/keto reductase family M892_20900 PF00072 Response regulator receiver domain M892_20910 PF01256 Carbohydrate kinase M892_20910 PF03853 YjeF-related protein N-terminus M892_20915 PF00478 IMP dehydrogenase / GMP reductase domain M892_20935 PF04851 Type III restriction enzyme, res subunit M892_20945 PF01381 Helix-turn-helix M892_20955 PF09615 CRISPR-associated protein (Cas_Csy3) M892_21005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_21005 PF03466 LysR substrate binding domain M892_21025 PF13629 Pilus formation protein N terminal region M892_21025 PF04972 BON domain M892_21025 PF00263 Bacterial type II and III secretion system protein M892_21035 PF10609 NUBPL iron-transfer P-loop NTPase M892_21040 PF00437 Type II/IV secretion system protein M892_21075 PF13488 Glycine zipper M892_21075 PF00691 OmpA family M892_21090 PF13333 Integrase core domain M892_21090 PF00665 Integrase core domain M892_21090 PF13276 HTH-like domain M892_21100 PF00440 Bacterial regulatory proteins, tetR family M892_21100 PF13977 BetI-type transcriptional repressor, C-terminal M892_21105 PF00171 Aldehyde dehydrogenase family M892_21110 PF00732 GMC oxidoreductase M892_21110 PF05199 GMC oxidoreductase M892_21115 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M892_21120 PF00528 Binding-protein-dependent transport system inner membrane component M892_21125 PF00005 ABC transporter M892_21125 PF00571 CBS domain M892_21130 PF00881 Nitroreductase family M892_21135 PF16200 C-terminal region of band_7 M892_21135 PF01145 SPFH domain / Band 7 family M892_21155 PF03707 Bacterial signalling protein N terminal repeat M892_21155 PF00563 EAL domain M892_21155 PF00990 Diguanylate cyclase, GGDEF domain M892_21160 PF00512 His Kinase A (phospho-acceptor) domain M892_21160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_21160 PF09456 RcsC Alpha-Beta-Loop (ABL) M892_21160 PF00072 Response regulator receiver domain M892_21165 PF03150 Di-haem cytochrome c peroxidase M892_21165 PF00034 Cytochrome c M892_21170 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_21185 PF04116 Fatty acid hydroxylase superfamily M892_21200 PF09335 SNARE associated Golgi protein M892_21215 PF14706 Transposase DNA-binding M892_21215 PF02281 Transposase Tn5 dimerisation domain M892_21215 PF01609 Transposase DDE domain M892_21235 PF00563 EAL domain M892_21235 PF00990 Diguanylate cyclase, GGDEF domain M892_21240 PF05025 RbsD / FucU transport protein family M892_21245 PF00005 ABC transporter M892_21250 PF02653 Branched-chain amino acid transport system / permease component M892_21255 PF13407 Periplasmic binding protein domain M892_21260 PF00294 pfkB family carbohydrate kinase M892_21265 PF00356 Bacterial regulatory proteins, lacI family M892_21275 PF04973 Nicotinamide mononucleotide transporter M892_21280 PF01048 Phosphorylase superfamily M892_21295 PF01497 Periplasmic binding protein M892_21300 PF01032 FecCD transport family M892_21305 PF01032 FecCD transport family M892_21310 PF00005 ABC transporter M892_21315 PF13411 MerR HTH family regulatory protein M892_21340 PF12805 FUSC-like inner membrane protein yccS M892_21345 PF00580 UvrD/REP helicase N-terminal domain M892_21345 PF12462 DNA helicase IV / RNA helicase N terminal M892_21345 PF13361 UvrD-like helicase C-terminal domain M892_21350 PF02142 MGS-like domain M892_21355 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M892_21365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_21365 PF00672 HAMP domain M892_21365 PF00512 His Kinase A (phospho-acceptor) domain M892_21365 PF01627 Hpt domain M892_21365 PF00072 Response regulator receiver domain M892_21385 PF16750 Sensor domain of 2-component histidine kinase M892_21385 PF00512 His Kinase A (phospho-acceptor) domain M892_21385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_21385 PF00672 HAMP domain M892_21390 PF00486 Transcriptional regulatory protein, C terminal M892_21390 PF00072 Response regulator receiver domain M892_21400 PF00119 ATP synthase A chain M892_21405 PF00137 ATP synthase subunit C M892_21410 PF00430 ATP synthase B/B' CF(0) M892_21415 PF00213 ATP synthase delta (OSCP) subunit M892_21420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M892_21420 PF00306 ATP synthase alpha/beta chain, C terminal domain M892_21420 PF02874 ATP synthase alpha/beta family, beta-barrel domain M892_21425 PF00231 ATP synthase M892_21430 PF02874 ATP synthase alpha/beta family, beta-barrel domain M892_21430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M892_21435 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M892_21435 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M892_21440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M892_21440 PF01872 RibD C-terminal domain M892_21450 PF18081 Fanconi anemia-associated nuclease SAP domain M892_21450 PF08774 VRR-NUC domain M892_21465 PF03606 C4-dicarboxylate anaerobic carrier M892_21485 PF13358 DDE superfamily endonuclease M892_21490 PF00072 Response regulator receiver domain M892_21490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_21495 PF00155 Aminotransferase class I and II M892_21500 PF01926 50S ribosome-binding GTPase M892_21525 PF00665 Integrase core domain M892_21525 PF13276 HTH-like domain M892_21525 PF13333 Integrase core domain M892_21570 PF00692 dUTPase M892_21590 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M892_21590 PF02142 MGS-like domain M892_21590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M892_21610 PF00665 Integrase core domain M892_21615 PF01695 IstB-like ATP binding protein M892_21620 PF13007 Transposase C of IS166 homeodomain M892_21620 PF13817 IS66 C-terminal element M892_21620 PF13005 zinc-finger binding domain of transposase IS66 M892_21620 PF03050 Transposase IS66 family M892_21665 PF13358 DDE superfamily endonuclease M892_21705 PF07690 Major Facilitator Superfamily M892_21725 PF00293 NUDIX domain M892_21740 PF02583 Metal-sensitive transcriptional repressor M892_21750 PF00005 ABC transporter M892_21750 PF00664 ABC transporter transmembrane region M892_21770 PF03466 LysR substrate binding domain M892_21770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_21775 PF01039 Carboxyl transferase domain M892_21775 PF17848 Acetyl-coA carboxylase zinc finger domain M892_21795 PF13276 HTH-like domain M892_21795 PF00665 Integrase core domain M892_21795 PF13333 Integrase core domain M892_21810 PF00005 ABC transporter M892_21815 PF01032 FecCD transport family M892_21820 PF01032 FecCD transport family M892_21825 PF01497 Periplasmic binding protein M892_21845 PF13737 Transposase DDE domain M892_21850 PF12759 InsA C-terminal domain M892_21850 PF03811 InsA N-terminal domain M892_21855 PF13358 DDE superfamily endonuclease M892_21865 PF13737 Transposase DDE domain M892_21900 PF09134 Invasin, domain 3 M892_21900 PF11924 Inverse autotransporter, beta-domain M892_21900 PF02369 Bacterial Ig-like domain (group 1) M892_21910 PF13737 Transposase DDE domain M892_21915 PF12759 InsA C-terminal domain M892_21915 PF03811 InsA N-terminal domain M892_21920 PF13737 Transposase DDE domain M892_21940 PF02369 Bacterial Ig-like domain (group 1) M892_21940 PF11924 Inverse autotransporter, beta-domain M892_21940 PF09134 Invasin, domain 3 M892_21950 PF13737 Transposase DDE domain M892_21955 PF02347 Glycine cleavage system P-protein M892_21960 PF01597 Glycine cleavage H-protein M892_21965 PF00464 Serine hydroxymethyltransferase M892_21975 PF08669 Glycine cleavage T-protein C-terminal barrel domain M892_21975 PF01571 Aminomethyltransferase folate-binding domain M892_21980 PF13006 Insertion element 4 transposase N-terminal M892_21980 PF01609 Transposase DDE domain M892_21990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_21995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_22000 PF00873 AcrB/AcrD/AcrF family M892_22015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M892_22015 PF02378 Phosphotransferase system, EIIC M892_22020 PF00294 pfkB family carbohydrate kinase M892_22025 PF00381 PTS HPr component phosphorylation site M892_22025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M892_22030 PF00356 Bacterial regulatory proteins, lacI family M892_22030 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M892_22045 PF01590 GAF domain M892_22045 PF00990 Diguanylate cyclase, GGDEF domain M892_22045 PF00563 EAL domain M892_22045 PF00989 PAS fold M892_22050 PF00528 Binding-protein-dependent transport system inner membrane component M892_22055 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_22060 PF00528 Binding-protein-dependent transport system inner membrane component M892_22065 PF00005 ABC transporter M892_22075 PF00465 Iron-containing alcohol dehydrogenase M892_22080 PF12833 Helix-turn-helix domain M892_22080 PF06719 AraC-type transcriptional regulator N-terminus M892_22085 PF00704 Glycosyl hydrolases family 18 M892_22085 PF06483 Chitinase C M892_22090 PF00483 Nucleotidyl transferase M892_22095 PF01268 Formate--tetrahydrofolate ligase M892_22100 PF00294 pfkB family carbohydrate kinase M892_22120 PF13419 Haloacid dehalogenase-like hydrolase M892_22125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_22125 PF17200 Single Cache domain 2 M892_22125 PF00672 HAMP domain M892_22135 PF04336 Acyl carrier protein phosphodiesterase M892_22140 PF00270 DEAD/DEAH box helicase M892_22140 PF00271 Helicase conserved C-terminal domain M892_22145 PF12792 CSS motif domain associated with EAL M892_22145 PF00563 EAL domain M892_22160 PF13005 zinc-finger binding domain of transposase IS66 M892_22160 PF03050 Transposase IS66 family M892_22160 PF13817 IS66 C-terminal element M892_22160 PF13007 Transposase C of IS166 homeodomain M892_22180 PF01292 Prokaryotic cytochrome b561 M892_22185 PF04264 YceI-like domain M892_22190 PF01226 Formate/nitrite transporter M892_22195 PF03466 LysR substrate binding domain M892_22195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_22200 PF06496 Protein of unknown function (DUF1097) M892_22205 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_22210 PF11398 Protein of unknown function (DUF2813) M892_22215 PF02872 5'-nucleotidase, C-terminal domain M892_22215 PF00149 Calcineurin-like phosphoesterase M892_22225 PF03741 Integral membrane protein TerC family M892_22235 PF01609 Transposase DDE domain M892_22235 PF13006 Insertion element 4 transposase N-terminal M892_22250 PF03050 Transposase IS66 family M892_22250 PF13007 Transposase C of IS166 homeodomain M892_22250 PF13005 zinc-finger binding domain of transposase IS66 M892_22250 PF13817 IS66 C-terminal element M892_22270 PF00704 Glycosyl hydrolases family 18 M892_22280 PF13358 DDE superfamily endonuclease M892_22285 PF00072 Response regulator receiver domain M892_22285 PF00196 Bacterial regulatory proteins, luxR family M892_22290 PF13358 DDE superfamily endonuclease M892_22295 PF00881 Nitroreductase family M892_22300 PF00072 Response regulator receiver domain M892_22300 PF01584 CheW-like domain M892_22310 PF00892 EamA-like transporter family M892_22320 PF01569 PAP2 superfamily M892_22330 PF13006 Insertion element 4 transposase N-terminal M892_22330 PF01609 Transposase DDE domain M892_22350 PF00691 OmpA family M892_22355 PF02954 Bacterial regulatory protein, Fis family M892_22355 PF00158 Sigma-54 interaction domain M892_22360 PF10431 C-terminal, D2-small domain, of ClpB protein M892_22360 PF07724 AAA domain (Cdc48 subfamily) M892_22360 PF00004 ATPase family associated with various cellular activities (AAA) M892_22360 PF17871 AAA lid domain M892_22365 PF05638 Type VI secretion system effector, Hcp M892_22370 PF04717 Type VI secretion system, phage-baseplate injector M892_22395 PF00069 Protein kinase domain M892_22430 PF01037 Lrp/AsnC ligand binding domain M892_22470 PF13737 Transposase DDE domain M892_22485 PF07715 TonB-dependent Receptor Plug Domain M892_22485 PF00593 TonB dependent receptor M892_22495 PF03707 Bacterial signalling protein N terminal repeat M892_22495 PF00990 Diguanylate cyclase, GGDEF domain M892_22495 PF00563 EAL domain M892_22505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_22505 PF03466 LysR substrate binding domain M892_22545 PF11924 Inverse autotransporter, beta-domain M892_22545 PF09134 Invasin, domain 3 M892_22545 PF02369 Bacterial Ig-like domain (group 1) M892_22595 PF13817 IS66 C-terminal element M892_22595 PF03050 Transposase IS66 family M892_22595 PF13007 Transposase C of IS166 homeodomain M892_22595 PF13005 zinc-finger binding domain of transposase IS66 M892_22600 PF00809 Pterin binding enzyme M892_22600 PF02965 Vitamin B12 dependent methionine synthase, activation domain M892_22600 PF02574 Homocysteine S-methyltransferase M892_22600 PF02607 B12 binding domain M892_22600 PF02310 B12 binding domain M892_22615 PF12262 Bacterial virulence factor lipase N-terminal M892_22620 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M892_22630 PF01435 Peptidase family M48 M892_22635 PF03061 Thioesterase superfamily M892_22645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M892_22645 PF12793 Sugar transport-related sRNA regulator N-term M892_22670 PF01556 DnaJ C terminal domain M892_22670 PF00684 DnaJ central domain M892_22670 PF00226 DnaJ domain M892_22680 PF00990 Diguanylate cyclase, GGDEF domain M892_22680 PF03707 Bacterial signalling protein N terminal repeat M892_22680 PF13188 PAS domain M892_22680 PF00563 EAL domain M892_22685 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M892_22685 PF07055 Enoyl reductase FAD binding domain M892_22685 PF12241 Trans-2-enoyl-CoA reductase catalytic region M892_22690 PF13472 GDSL-like Lipase/Acylhydrolase family M892_22695 PF00005 ABC transporter M892_22710 PF02626 Carboxyltransferase domain, subdomain A and B M892_22715 PF02682 Carboxyltransferase domain, subdomain C and D M892_22720 PF03746 LamB/YcsF family M892_22725 PF13426 PAS domain M892_22725 PF00563 EAL domain M892_22725 PF08447 PAS fold M892_22725 PF08448 PAS fold M892_22725 PF05231 MASE1 M892_22725 PF00990 Diguanylate cyclase, GGDEF domain M892_22730 PF16363 GDP-mannose 4,6 dehydratase M892_22735 PF13006 Insertion element 4 transposase N-terminal M892_22735 PF01609 Transposase DDE domain M892_22740 PF07715 TonB-dependent Receptor Plug Domain M892_22740 PF00593 TonB dependent receptor M892_22740 PF04886 PT repeat M892_22745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_22745 PF03466 LysR substrate binding domain M892_22750 PF00583 Acetyltransferase (GNAT) family M892_22750 PF13607 Succinyl-CoA ligase like flavodoxin domain M892_22750 PF13380 CoA binding domain M892_22755 PF05036 Sporulation related domain M892_22760 PF01820 D-ala D-ala ligase N-terminus M892_22760 PF07478 D-ala D-ala ligase C-terminus M892_22770 PF01253 Translation initiation factor SUI1 M892_22900 PF13276 HTH-like domain M892_22900 PF13333 Integrase core domain M892_22900 PF00665 Integrase core domain M892_22935 PF13333 Integrase core domain M892_22935 PF13276 HTH-like domain M892_22935 PF00665 Integrase core domain M892_22945 PF13006 Insertion element 4 transposase N-terminal M892_22945 PF01609 Transposase DDE domain M892_22950 PF03701 Uncharacterised protein family (UPF0181) M892_22965 PF00486 Transcriptional regulatory protein, C terminal M892_22965 PF00072 Response regulator receiver domain M892_22975 PF02233 NAD(P) transhydrogenase beta subunit M892_22980 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M892_22980 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M892_22980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M892_22995 PF00990 Diguanylate cyclase, GGDEF domain M892_22995 PF00072 Response regulator receiver domain M892_23000 PF01590 GAF domain M892_23000 PF00990 Diguanylate cyclase, GGDEF domain M892_23000 PF00563 EAL domain M892_23000 PF00360 Phytochrome region M892_23010 PF03459 TOBE domain M892_23010 PF00005 ABC transporter M892_23015 PF00528 Binding-protein-dependent transport system inner membrane component M892_23025 PF07685 CobB/CobQ-like glutamine amidotransferase domain M892_23025 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M892_23030 PF04076 Bacterial OB fold (BOF) protein M892_23040 PF01609 Transposase DDE domain M892_23040 PF02281 Transposase Tn5 dimerisation domain M892_23040 PF14706 Transposase DNA-binding M892_23050 PF00155 Aminotransferase class I and II M892_23070 PF01554 MatE M892_23080 PF13597 Anaerobic ribonucleoside-triphosphate reductase M892_23080 PF03477 ATP cone domain M892_23100 PF04143 Sulphur transport M892_23110 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_23110 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M892_23145 PF13006 Insertion element 4 transposase N-terminal M892_23145 PF01609 Transposase DDE domain M892_23150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M892_23150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M892_23155 PF00085 Thioredoxin M892_23160 PF07690 Major Facilitator Superfamily M892_23165 PF13358 DDE superfamily endonuclease M892_23170 PF11756 Nitrous oxide-stimulated promoter M892_23185 PF17200 Single Cache domain 2 M892_23185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_23185 PF00672 HAMP domain M892_23190 PF03605 Anaerobic c4-dicarboxylate membrane transporter M892_23240 PF09154 Domain of unknown function (DUF1939) M892_23240 PF00128 Alpha amylase, catalytic domain M892_23260 PF01565 FAD binding domain M892_23260 PF09330 D-lactate dehydrogenase, membrane binding M892_23280 PF05762 VWA domain containing CoxE-like protein M892_23285 PF07728 AAA domain (dynein-related subfamily) M892_23285 PF17868 AAA lid domain M892_23285 PF12592 Protein of unknown function (DUF3763) M892_23295 PF01212 Beta-eliminating lyase M892_23300 PF00034 Cytochrome c M892_23305 PF03606 C4-dicarboxylate anaerobic carrier M892_23310 PF03606 C4-dicarboxylate anaerobic carrier M892_23320 PF08212 Lipocalin-like domain M892_23340 PF13358 DDE superfamily endonuclease M892_23350 PF13276 HTH-like domain M892_23350 PF13333 Integrase core domain M892_23350 PF00665 Integrase core domain M892_23355 PF00704 Glycosyl hydrolases family 18 M892_23365 PF13476 AAA domain M892_23370 PF00149 Calcineurin-like phosphoesterase M892_23370 PF12320 Type 5 capsule protein repressor C-terminal domain M892_23380 PF13276 HTH-like domain M892_23380 PF00665 Integrase core domain M892_23380 PF13333 Integrase core domain M892_23400 PF17200 Single Cache domain 2 M892_23400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_23400 PF00672 HAMP domain M892_23405 PF13358 DDE superfamily endonuclease M892_23425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_23430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M892_23440 PF01757 Acyltransferase family M892_23455 PF00171 Aldehyde dehydrogenase family M892_23475 PF00892 EamA-like transporter family M892_23480 PF13006 Insertion element 4 transposase N-terminal M892_23480 PF01609 Transposase DDE domain M892_23495 PF03050 Transposase IS66 family M892_23495 PF13817 IS66 C-terminal element M892_23495 PF13007 Transposase C of IS166 homeodomain M892_23495 PF13005 zinc-finger binding domain of transposase IS66 M892_23500 PF08525 Opacity-associated protein A N-terminal motif M892_23500 PF01476 LysM domain M892_23500 PF01551 Peptidase family M23 M892_23510 PF13276 HTH-like domain M892_23510 PF00665 Integrase core domain M892_23510 PF13333 Integrase core domain M892_23540 PF11867 Domain of unknown function (DUF3387) M892_23540 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) M892_23540 PF18766 SWI2/SNF2 ATPase M892_23575 PF13358 DDE superfamily endonuclease M892_23585 PF13358 DDE superfamily endonuclease M892_23590 PF01551 Peptidase family M23 M892_23590 PF08525 Opacity-associated protein A N-terminal motif M892_23590 PF01476 LysM domain M892_23595 PF03466 LysR substrate binding domain M892_23595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_23605 PF00211 Adenylate and Guanylate cyclase catalytic domain M892_23605 PF00072 Response regulator receiver domain M892_23620 PF00440 Bacterial regulatory proteins, tetR family M892_23620 PF08361 MAATS-type transcriptional repressor, C-terminal region M892_23635 PF04324 BFD-like [2Fe-2S] binding domain M892_23635 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M892_23635 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M892_23635 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_23635 PF13806 Rieske-like [2Fe-2S] domain M892_23635 PF18267 Rubredoxin NAD+ reductase C-terminal domain M892_23640 PF00005 ABC transporter M892_23645 PF00528 Binding-protein-dependent transport system inner membrane component M892_23650 PF00005 ABC transporter M892_23655 PF03861 ANTAR domain M892_23655 PF00072 Response regulator receiver domain M892_23660 PF01738 Dienelactone hydrolase family M892_23665 PF00591 Glycosyl transferase family, a/b domain M892_23665 PF02885 Glycosyl transferase family, helical bundle domain M892_23670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M892_23670 PF14824 Sirohaem biosynthesis protein central M892_23670 PF10414 Sirohaem synthase dimerisation region M892_23675 PF00384 Molybdopterin oxidoreductase M892_23675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M892_23675 PF01568 Molydopterin dinucleotide binding domain M892_23685 PF03222 Tryptophan/tyrosine permease family M892_23695 PF00990 Diguanylate cyclase, GGDEF domain M892_23695 PF08448 PAS fold M892_23705 PF00082 Subtilase family M892_23705 PF01483 Proprotein convertase P-domain M892_23720 PF01609 Transposase DDE domain M892_23720 PF13006 Insertion element 4 transposase N-terminal M892_23730 PF00072 Response regulator receiver domain M892_23730 PF00486 Transcriptional regulatory protein, C terminal M892_23775 PF01548 Transposase M892_23775 PF02371 Transposase IS116/IS110/IS902 family M892_23780 PF00012 Hsp70 protein M892_23795 PF00676 Dehydrogenase E1 component M892_23800 PF02779 Transketolase, pyrimidine binding domain M892_23800 PF02780 Transketolase, C-terminal domain M892_23805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M892_23805 PF02817 e3 binding domain M892_23805 PF00364 Biotin-requiring enzyme M892_23810 PF02371 Transposase IS116/IS110/IS902 family M892_23810 PF01548 Transposase M892_23815 PF00766 Electron transfer flavoprotein FAD-binding domain M892_23815 PF01012 Electron transfer flavoprotein domain M892_23820 PF01012 Electron transfer flavoprotein domain M892_23830 PF00563 EAL domain M892_23830 PF12792 CSS motif domain associated with EAL M892_23835 PF13358 DDE superfamily endonuclease M892_23850 PF02424 ApbE family M892_23855 PF00890 FAD binding domain M892_23855 PF04205 FMN-binding domain M892_23855 PF03358 NADPH-dependent FMN reductase M892_23860 PF00043 Glutathione S-transferase, C-terminal domain M892_23860 PF13417 Glutathione S-transferase, N-terminal domain M892_23865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_23865 PF03466 LysR substrate binding domain M892_23875 PF00528 Binding-protein-dependent transport system inner membrane component M892_23880 PF00528 Binding-protein-dependent transport system inner membrane component M892_23885 PF00497 Bacterial extracellular solute-binding proteins, family 3 M892_23890 PF00005 ABC transporter M892_23915 PF05643 Putative bacterial lipoprotein (DUF799) M892_23920 PF13005 zinc-finger binding domain of transposase IS66 M892_23920 PF13007 Transposase C of IS166 homeodomain M892_23920 PF13817 IS66 C-terminal element M892_23920 PF03050 Transposase IS66 family M892_23940 PF04389 Peptidase family M28 M892_23940 PF04151 Bacterial pre-peptidase C-terminal domain M892_23945 PF07504 Fungalysin/Thermolysin Propeptide Motif M892_23945 PF04151 Bacterial pre-peptidase C-terminal domain M892_23945 PF02868 Thermolysin metallopeptidase, alpha-helical domain M892_23945 PF01447 Thermolysin metallopeptidase, catalytic domain M892_23945 PF03413 Peptidase propeptide and YPEB domain M892_23960 PF13005 zinc-finger binding domain of transposase IS66 M892_23960 PF13007 Transposase C of IS166 homeodomain M892_23960 PF03050 Transposase IS66 family M892_23960 PF13817 IS66 C-terminal element M892_23990 PF00171 Aldehyde dehydrogenase family M892_24000 PF03466 LysR substrate binding domain M892_24000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_24005 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_24005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M892_24010 PF01040 UbiA prenyltransferase family M892_24015 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M892_24020 PF00510 Cytochrome c oxidase subunit III M892_24025 PF00115 Cytochrome C and Quinol oxidase polypeptide I M892_24030 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M892_24030 PF06481 COX Aromatic Rich Motif M892_24040 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M892_24040 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M892_24045 PF00378 Enoyl-CoA hydratase/isomerase M892_24050 PF00378 Enoyl-CoA hydratase/isomerase M892_24060 PF00171 Aldehyde dehydrogenase family M892_24065 PF02803 Thiolase, C-terminal domain M892_24065 PF00108 Thiolase, N-terminal domain M892_24070 PF09278 MerR, DNA binding M892_24070 PF00376 MerR family regulatory protein M892_24075 PF02770 Acyl-CoA dehydrogenase, middle domain M892_24075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M892_24075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M892_24080 PF01039 Carboxyl transferase domain M892_24085 PF00378 Enoyl-CoA hydratase/isomerase M892_24090 PF00682 HMGL-like M892_24120 PF00034 Cytochrome c M892_24125 PF00115 Cytochrome C and Quinol oxidase polypeptide I M892_24135 PF00034 Cytochrome c M892_24135 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M892_24140 PF01575 MaoC like domain M892_24160 PF13007 Transposase C of IS166 homeodomain M892_24160 PF13005 zinc-finger binding domain of transposase IS66 M892_24160 PF13817 IS66 C-terminal element M892_24160 PF03050 Transposase IS66 family M892_24165 PF01568 Molydopterin dinucleotide binding domain M892_24165 PF18364 Molybdopterin oxidoreductase N-terminal domain M892_24165 PF00384 Molybdopterin oxidoreductase M892_24170 PF03264 NapC/NirT cytochrome c family, N-terminal region M892_24175 PF13737 Transposase DDE domain M892_24180 PF00005 ABC transporter M892_24185 PF12792 CSS motif domain associated with EAL M892_24185 PF00563 EAL domain M892_24200 PF00270 DEAD/DEAH box helicase M892_24200 PF00271 Helicase conserved C-terminal domain M892_24205 PF00990 Diguanylate cyclase, GGDEF domain M892_24205 PF13426 PAS domain M892_24205 PF08448 PAS fold M892_24205 PF05231 MASE1 M892_24205 PF08447 PAS fold M892_24205 PF00563 EAL domain M892_24210 PF13006 Insertion element 4 transposase N-terminal M892_24210 PF01609 Transposase DDE domain M892_24215 PF02492 CobW/HypB/UreG, nucleotide-binding domain M892_24215 PF07683 Cobalamin synthesis protein cobW C-terminal domain M892_24225 PF01470 Pyroglutamyl peptidase M892_24240 PF00583 Acetyltransferase (GNAT) family M892_24255 PF12843 Putative quorum-sensing-regulated virulence factor M892_24280 PF01329 Pterin 4 alpha carbinolamine dehydratase M892_24285 PF00351 Biopterin-dependent aromatic amino acid hydroxylase M892_24290 PF13193 AMP-binding enzyme C-terminal domain M892_24290 PF00501 AMP-binding enzyme M892_24300 PF03466 LysR substrate binding domain M892_24300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_24310 PF00892 EamA-like transporter family M892_24325 PF00465 Iron-containing alcohol dehydrogenase M892_24330 PF07995 Glucose / Sorbosone dehydrogenase M892_24335 PF17676 LD-carboxypeptidase C-terminal domain M892_24335 PF02016 LD-carboxypeptidase N-terminal domain M892_24345 PF00210 Ferritin-like domain M892_24350 PF00672 HAMP domain M892_24350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_24360 PF12704 MacB-like periplasmic core domain M892_24360 PF02687 FtsX-like permease family M892_24360 PF00005 ABC transporter M892_24365 PF12704 MacB-like periplasmic core domain M892_24365 PF00005 ABC transporter M892_24365 PF02687 FtsX-like permease family M892_24380 PF00990 Diguanylate cyclase, GGDEF domain M892_24390 PF03889 Alternative ribosome-rescue factor A M892_24395 PF00313 'Cold-shock' DNA-binding domain M892_24415 PF05736 OprF membrane domain M892_24415 PF00691 OmpA family M892_24425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M892_24425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M892_24430 PF13419 Haloacid dehalogenase-like hydrolase M892_24435 PF00472 RF-1 domain M892_24440 PF00672 HAMP domain M892_24440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_24440 PF12729 Four helix bundle sensory module for signal transduction M892_24445 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M892_24450 PF01546 Peptidase family M20/M25/M40 M892_24450 PF07687 Peptidase dimerisation domain M892_24465 PF00072 Response regulator receiver domain M892_24465 PF00196 Bacterial regulatory proteins, luxR family M892_24470 PF07730 Histidine kinase M892_24470 PF00672 HAMP domain M892_24470 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M892_24470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_24480 PF13187 4Fe-4S dicluster domain M892_24480 PF12838 4Fe-4S dicluster domain M892_24490 PF01568 Molydopterin dinucleotide binding domain M892_24490 PF00384 Molybdopterin oxidoreductase M892_24490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M892_24495 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M892_24500 PF03264 NapC/NirT cytochrome c family, N-terminal region M892_24510 PF13007 Transposase C of IS166 homeodomain M892_24510 PF03050 Transposase IS66 family M892_24510 PF13005 zinc-finger binding domain of transposase IS66 M892_24510 PF13817 IS66 C-terminal element M892_24525 PF00561 alpha/beta hydrolase fold M892_24525 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus M892_24535 PF02803 Thiolase, C-terminal domain M892_24535 PF00108 Thiolase, N-terminal domain M892_24540 PF00106 short chain dehydrogenase M892_24545 PF01810 LysE type translocator M892_24555 PF02355 Protein export membrane protein M892_24555 PF07549 SecD/SecF GG Motif M892_24560 PF07549 SecD/SecF GG Motif M892_24560 PF13721 SecD export protein N-terminal TM region M892_24560 PF02355 Protein export membrane protein M892_24585 PF01037 Lrp/AsnC ligand binding domain M892_24600 PF01609 Transposase DDE domain M892_24600 PF13006 Insertion element 4 transposase N-terminal M892_24605 PF09308 LuxQ, periplasmic M892_24605 PF00072 Response regulator receiver domain M892_24605 PF00512 His Kinase A (phospho-acceptor) domain M892_24605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_24610 PF13407 Periplasmic binding protein domain M892_24615 PF01541 GIY-YIG catalytic domain M892_24620 PF04337 Protein of unknown function, DUF480 M892_24630 PF04363 Protein of unknown function (DUF496) M892_24635 PF01554 MatE M892_24640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M892_24650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M892_24650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M892_24665 PF03466 LysR substrate binding domain M892_24665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_24675 PF01037 Lrp/AsnC ligand binding domain M892_24675 PF13404 AsnC-type helix-turn-helix domain M892_24680 PF13520 Amino acid permease M892_24685 PF00155 Aminotransferase class I and II M892_24685 PF00392 Bacterial regulatory proteins, gntR family M892_24695 PF00512 His Kinase A (phospho-acceptor) domain M892_24695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_24695 PF00672 HAMP domain M892_24695 PF16527 Two-component sensor protein CpxA, periplasmic domain M892_24700 PF00072 Response regulator receiver domain M892_24700 PF00486 Transcriptional regulatory protein, C terminal M892_24730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_24730 PF00529 HlyD membrane-fusion protein of T1SS M892_24735 PF03109 ABC1 family M892_24740 PF03448 MgtE intracellular N domain M892_24740 PF01769 Divalent cation transporter M892_24740 PF00571 CBS domain M892_24745 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M892_24750 PF07969 Amidohydrolase family M892_24765 PF01966 HD domain M892_24790 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M892_24795 PF13006 Insertion element 4 transposase N-terminal M892_24795 PF01609 Transposase DDE domain M892_24800 PF00255 Glutathione peroxidase M892_24815 PF01323 DSBA-like thioredoxin domain M892_24830 PF00106 short chain dehydrogenase M892_24840 PF00583 Acetyltransferase (GNAT) family M892_24840 PF08218 Citrate lyase ligase C-terminal domain M892_24845 PF13358 DDE superfamily endonuclease M892_24875 PF00072 Response regulator receiver domain M892_24875 PF00486 Transcriptional regulatory protein, C terminal M892_24880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_24880 PF00512 His Kinase A (phospho-acceptor) domain M892_24880 PF00672 HAMP domain M892_24890 PF01219 Prokaryotic diacylglycerol kinase M892_24895 PF08019 Phosphoethanolamine transferase EptA/EptB M892_24895 PF00884 Sulfatase M892_24900 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M892_24905 PF01965 DJ-1/PfpI family M892_24905 PF12833 Helix-turn-helix domain M892_24940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_24940 PF03466 LysR substrate binding domain M892_24945 PF02525 Flavodoxin-like fold M892_24950 PF00999 Sodium/hydrogen exchanger family M892_24950 PF02254 TrkA-N domain M892_24960 PF03466 LysR substrate binding domain M892_24960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_24990 PF03050 Transposase IS66 family M892_24990 PF13007 Transposase C of IS166 homeodomain M892_24990 PF13817 IS66 C-terminal element M892_24990 PF13005 zinc-finger binding domain of transposase IS66 M892_25010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_25010 PF03466 LysR substrate binding domain M892_25025 PF00106 short chain dehydrogenase M892_25040 PF08240 Alcohol dehydrogenase GroES-like domain M892_25040 PF14765 Polyketide synthase dehydratase M892_25040 PF00550 Phosphopantetheine attachment site M892_25040 PF08659 KR domain M892_25040 PF02801 Beta-ketoacyl synthase, C-terminal domain M892_25040 PF00109 Beta-ketoacyl synthase, N-terminal domain M892_25040 PF00698 Acyl transferase domain M892_25040 PF16197 Ketoacyl-synthetase C-terminal extension M892_25045 PF00128 Alpha amylase, catalytic domain M892_25055 PF01584 CheW-like domain M892_25055 PF00072 Response regulator receiver domain M892_25070 PF01243 Pyridoxamine 5'-phosphate oxidase M892_25075 PF06228 Haem utilisation ChuX/HutX M892_25080 PF04055 Radical SAM superfamily M892_25085 PF03544 Gram-negative bacterial TonB protein C-terminal M892_25090 PF01618 MotA/TolQ/ExbB proton channel family M892_25095 PF02472 Biopolymer transport protein ExbD/TolR M892_25105 PF01032 FecCD transport family M892_25110 PF00005 ABC transporter M892_25150 PF01467 Cytidylyltransferase-like M892_25155 PF02540 NAD synthase M892_25160 PF00175 Oxidoreductase NAD-binding domain M892_25160 PF00111 2Fe-2S iron-sulfur cluster binding domain M892_25160 PF00970 Oxidoreductase FAD-binding domain M892_25165 PF01679 Proteolipid membrane potential modulator M892_25170 PF01979 Amidohydrolase family M892_25175 PF05661 Protein of unknown function (DUF808) M892_25215 PF00528 Binding-protein-dependent transport system inner membrane component M892_25220 PF00528 Binding-protein-dependent transport system inner membrane component M892_25220 PF14785 Maltose transport system permease protein MalF P2 domain M892_25225 PF01547 Bacterial extracellular solute-binding protein M892_25235 PF00005 ABC transporter M892_25235 PF08402 TOBE domain M892_25240 PF13358 DDE superfamily endonuclease M892_25255 PF13005 zinc-finger binding domain of transposase IS66 M892_25255 PF13007 Transposase C of IS166 homeodomain M892_25255 PF13817 IS66 C-terminal element M892_25255 PF03050 Transposase IS66 family M892_25265 PF02397 Bacterial sugar transferase M892_25285 PF13439 Glycosyltransferase Family 4 M892_25285 PF00534 Glycosyl transferases group 1 M892_25320 PF00440 Bacterial regulatory proteins, tetR family M892_25320 PF16925 Tetracyclin repressor-like, C-terminal domain M892_25325 PF16884 N-terminal domain of oxidoreductase M892_25325 PF00107 Zinc-binding dehydrogenase M892_25335 PF06628 Catalase-related immune-responsive M892_25335 PF00199 Catalase M892_25340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M892_25340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M892_25355 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M892_25365 PF12833 Helix-turn-helix domain M892_25370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M892_25370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M892_25375 PF01238 Phosphomannose isomerase type I M892_25385 PF00892 EamA-like transporter family M892_25400 PF13006 Insertion element 4 transposase N-terminal M892_25400 PF01609 Transposase DDE domain M892_25405 PF13419 Haloacid dehalogenase-like hydrolase M892_25410 PF00375 Sodium:dicarboxylate symporter family M892_25420 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_25430 PF00127 Copper binding proteins, plastocyanin/azurin family M892_25435 PF02378 Phosphotransferase system, EIIC M892_25440 PF00563 EAL domain M892_25440 PF03707 Bacterial signalling protein N terminal repeat M892_25440 PF00990 Diguanylate cyclase, GGDEF domain M892_25450 PF00691 OmpA family M892_25450 PF01389 OmpA-like transmembrane domain M892_25475 PF00512 His Kinase A (phospho-acceptor) domain M892_25475 PF02743 Cache domain M892_25475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_25480 PF02954 Bacterial regulatory protein, Fis family M892_25480 PF00158 Sigma-54 interaction domain M892_25480 PF00072 Response regulator receiver domain M892_25485 PF00529 HlyD membrane-fusion protein of T1SS M892_25490 PF00005 ABC transporter M892_25490 PF00664 ABC transporter transmembrane region M892_25500 PF00196 Bacterial regulatory proteins, luxR family M892_25505 PF00196 Bacterial regulatory proteins, luxR family M892_25515 PF02743 Cache domain M892_25515 PF00672 HAMP domain M892_25515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_25520 PF00027 Cyclic nucleotide-binding domain M892_25520 PF13545 Crp-like helix-turn-helix domain M892_25525 PF17863 AAA lid domain M892_25525 PF07726 ATPase family associated with various cellular activities (AAA) M892_25530 PF01882 Protein of unknown function DUF58 M892_25540 PF13519 von Willebrand factor type A domain M892_25545 PF13519 von Willebrand factor type A domain M892_25560 PF00005 ABC transporter M892_25565 PF00528 Binding-protein-dependent transport system inner membrane component M892_25570 PF00528 Binding-protein-dependent transport system inner membrane component M892_25575 PF12849 PBP superfamily domain M892_25580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_25580 PF00672 HAMP domain M892_25615 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M892_25615 PF00326 Prolyl oligopeptidase family M892_25625 PF00270 DEAD/DEAH box helicase M892_25625 PF00271 Helicase conserved C-terminal domain M892_25635 PF03734 L,D-transpeptidase catalytic domain M892_25635 PF01476 LysM domain M892_25635 PF17969 L,D-transpeptidase C-terminal domain M892_25640 PF03441 FAD binding domain of DNA photolyase M892_25640 PF00875 DNA photolyase M892_25645 PF13411 MerR HTH family regulatory protein M892_25650 PF08349 Protein of unknown function (DUF1722) M892_25655 PF01048 Phosphorylase superfamily M892_25670 PF00990 Diguanylate cyclase, GGDEF domain M892_25685 PF11742 Protein of unknown function (DUF3302) M892_25690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M892_25690 PF00529 HlyD membrane-fusion protein of T1SS M892_25695 PF07155 ECF-type riboflavin transporter, S component M892_25700 PF12558 ATP-binding cassette cobalt transporter M892_25700 PF00005 ABC transporter M892_25720 PF01022 Bacterial regulatory protein, arsR family M892_25725 PF13302 Acetyltransferase (GNAT) domain M892_25740 PF07238 PilZ domain M892_25740 PF12945 Flagellar protein YcgR M892_25745 PF13609 Gram-negative porin M892_25750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_25750 PF00672 HAMP domain M892_25755 PF13654 AAA domain M892_25755 PF05362 Lon protease (S16) C-terminal proteolytic domain M892_25765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M892_25765 PF00005 ABC transporter M892_25775 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M892_25775 PF00326 Prolyl oligopeptidase family M892_25785 PF01070 FMN-dependent dehydrogenase M892_25790 PF01070 FMN-dependent dehydrogenase M892_25800 PF00924 Mechanosensitive ion channel M892_25805 PF13006 Insertion element 4 transposase N-terminal M892_25805 PF01609 Transposase DDE domain M892_25810 PF00194 Eukaryotic-type carbonic anhydrase M892_25815 PF13358 DDE superfamily endonuclease M892_25830 PF13358 DDE superfamily endonuclease M892_25835 PF13358 DDE superfamily endonuclease M892_25840 PF00990 Diguanylate cyclase, GGDEF domain M892_25840 PF05230 MASE2 domain M892_25850 PF13358 DDE superfamily endonuclease M892_25855 PF13005 zinc-finger binding domain of transposase IS66 M892_25855 PF13007 Transposase C of IS166 homeodomain M892_25855 PF13817 IS66 C-terminal element M892_25855 PF03050 Transposase IS66 family M892_25885 PF03050 Transposase IS66 family M892_25885 PF13817 IS66 C-terminal element M892_25885 PF13007 Transposase C of IS166 homeodomain M892_25885 PF13005 zinc-finger binding domain of transposase IS66 M892_25915 PF08240 Alcohol dehydrogenase GroES-like domain M892_25915 PF00107 Zinc-binding dehydrogenase M892_25940 PF01548 Transposase M892_25940 PF02371 Transposase IS116/IS110/IS902 family M892_26115 PF05840 Bacteriophage replication gene A protein (GPA) M892_26135 PF06892 Phage regulatory protein CII (CP76) M892_26175 PF02899 Phage integrase, N-terminal SAM-like domain M892_26175 PF00589 Phage integrase family M892_26180 PF00107 Zinc-binding dehydrogenase M892_26180 PF08240 Alcohol dehydrogenase GroES-like domain M892_26190 PF00990 Diguanylate cyclase, GGDEF domain M892_26190 PF00563 EAL domain M892_26190 PF03707 Bacterial signalling protein N terminal repeat M892_26200 PF01609 Transposase DDE domain M892_26200 PF13006 Insertion element 4 transposase N-terminal M892_26205 PF00266 Aminotransferase class-V M892_26210 PF08448 PAS fold M892_26210 PF13426 PAS domain M892_26210 PF00512 His Kinase A (phospho-acceptor) domain M892_26210 PF00072 Response regulator receiver domain M892_26210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_26215 PF00486 Transcriptional regulatory protein, C terminal M892_26215 PF00072 Response regulator receiver domain M892_26235 PF03466 LysR substrate binding domain M892_26235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_26240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_26245 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M892_26280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_26280 PF03466 LysR substrate binding domain M892_26290 PF05231 MASE1 M892_26290 PF00563 EAL domain M892_26300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M892_26300 PF18269 T3SS EscN ATPase C-terminal domain M892_26310 PF14842 FliG N-terminal domain M892_26310 PF14841 FliG middle domain M892_26310 PF01706 FliG C-terminal domain M892_26315 PF08345 Flagellar M-ring protein C-terminal M892_26315 PF01514 Secretory protein of YscJ/FliF family M892_26320 PF02049 Flagellar hook-basal body complex protein FliE M892_26325 PF00072 Response regulator receiver domain M892_26325 PF02954 Bacterial regulatory protein, Fis family M892_26325 PF00158 Sigma-54 interaction domain M892_26340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M892_26345 PF00813 FliP family M892_26350 PF01313 Bacterial export proteins, family 3 M892_26355 PF01311 Bacterial export proteins, family 1 M892_26360 PF01312 FlhB HrpN YscU SpaS Family M892_26365 PF00771 FHIPEP family M892_26375 PF00669 Bacterial flagellin N-terminal helical region M892_26375 PF00700 Bacterial flagellin C-terminal helical region M892_26380 PF14706 Transposase DNA-binding M892_26380 PF02281 Transposase Tn5 dimerisation domain M892_26380 PF01609 Transposase DDE domain M892_26390 PF07195 Flagellar hook-associated protein 2 C-terminus M892_26390 PF02465 Flagellar hook-associated protein 2 N-terminus M892_26390 PF07196 Flagellin hook IN motif M892_26395 PF02561 Flagellar protein FliS M892_26410 PF03748 Flagellar basal body-associated protein FliL M892_26415 PF04542 Sigma-70 region 2 M892_26415 PF04545 Sigma-70, region 4 M892_26420 PF01618 MotA/TolQ/ExbB proton channel family M892_26425 PF00691 OmpA family M892_26425 PF13677 Membrane MotB of proton-channel complex MotA/MotB M892_26435 PF02567 Phenazine biosynthesis-like protein M892_26455 PF08000 Bacterial PH domain M892_26485 PF00557 Metallopeptidase family M24 M892_26485 PF01321 Creatinase/Prolidase N-terminal domain M892_26490 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M892_26500 PF03480 Bacterial extracellular solute-binding protein, family 7 M892_26505 PF07687 Peptidase dimerisation domain M892_26505 PF01546 Peptidase family M20/M25/M40 M892_26510 PF13358 DDE superfamily endonuclease M892_26525 PF01037 Lrp/AsnC ligand binding domain M892_26530 PF00291 Pyridoxal-phosphate dependent enzyme M892_26540 PF01070 FMN-dependent dehydrogenase M892_26560 PF00700 Bacterial flagellin C-terminal helical region M892_26560 PF00669 Bacterial flagellin N-terminal helical region M892_26570 PF10135 Rod binding protein M892_26570 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M892_26575 PF02119 Flagellar P-ring protein M892_26580 PF02107 Flagellar L-ring protein M892_26585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_26585 PF00460 Flagella basal body rod protein M892_26590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_26590 PF00460 Flagella basal body rod protein M892_26595 PF07559 Flagellar basal body protein FlaE M892_26595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_26595 PF00460 Flagella basal body rod protein M892_26600 PF03963 Flagellar hook capping protein - N-terminal region M892_26600 PF13861 FlgD Tudor-like domain M892_26600 PF13860 FlgD Ig-like domain M892_26605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M892_26605 PF00460 Flagella basal body rod protein M892_26610 PF00460 Flagella basal body rod protein M892_26630 PF01476 LysM domain M892_26630 PF01464 Transglycosylase SLT domain M892_26655 PF03315 Serine dehydratase beta chain M892_26655 PF03313 Serine dehydratase alpha chain M892_26660 PF00854 POT family M892_26665 PF01566 Natural resistance-associated macrophage protein M892_26675 PF03466 LysR substrate binding domain M892_26675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_26685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_26685 PF03466 LysR substrate binding domain M892_26690 PF00691 OmpA family M892_26690 PF01389 OmpA-like transmembrane domain M892_26695 PF00246 Zinc carboxypeptidase M892_26695 PF18027 Cytosolic carboxypeptidase N-terminal domain M892_26700 PF01266 FAD dependent oxidoreductase M892_26705 PF01609 Transposase DDE domain M892_26705 PF13006 Insertion element 4 transposase N-terminal M892_26715 PF04393 Protein of unknown function (DUF535) M892_26730 PF00392 Bacterial regulatory proteins, gntR family M892_26730 PF07702 UTRA domain M892_26735 PF00528 Binding-protein-dependent transport system inner membrane component M892_26740 PF00005 ABC transporter M892_26755 PF00266 Aminotransferase class-V M892_26765 PF13419 Haloacid dehalogenase-like hydrolase M892_26780 PF00657 GDSL-like Lipase/Acylhydrolase M892_26785 PF01609 Transposase DDE domain M892_26785 PF13006 Insertion element 4 transposase N-terminal M892_26790 PF13358 DDE superfamily endonuclease M892_26800 PF06803 Protein of unknown function (DUF1232) M892_26805 PF01546 Peptidase family M20/M25/M40 M892_26805 PF07687 Peptidase dimerisation domain M892_26815 PF07670 Nucleoside recognition M892_26835 PF00128 Alpha amylase, catalytic domain M892_26850 PF00912 Transglycosylase M892_26855 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M892_26855 PF00128 Alpha amylase, catalytic domain M892_26855 PF02806 Alpha amylase, C-terminal all-beta domain M892_26860 PF02446 4-alpha-glucanotransferase M892_26865 PF00343 Carbohydrate phosphorylase M892_26870 PF00196 Bacterial regulatory proteins, luxR family M892_26870 PF17874 MalT-like TPR region M892_26890 PF02630 SCO1/SenC M892_26900 PF00367 phosphotransferase system, EIIB M892_26900 PF02378 Phosphotransferase system, EIIC M892_26910 PF00375 Sodium:dicarboxylate symporter family M892_26920 PF08543 Phosphomethylpyrimidine kinase M892_26930 PF13520 Amino acid permease M892_26935 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M892_26935 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M892_26935 PF01276 Orn/Lys/Arg decarboxylase, major domain M892_26950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M892_26950 PF17967 Pullulanase N2 domain M892_26950 PF18494 Pullulanase Ins domain M892_26950 PF03714 Bacterial pullanase-associated domain M892_26950 PF11852 Domain of unknown function (DUF3372) M892_26955 PF04231 Endonuclease I M892_26965 PF00128 Alpha amylase, catalytic domain M892_26965 PF02903 Alpha amylase, N-terminal ig-like domain M892_26980 PF02264 LamB porin M892_26985 PF00128 Alpha amylase, catalytic domain M892_26985 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M892_26990 PF03315 Serine dehydratase beta chain M892_26990 PF03313 Serine dehydratase alpha chain M892_26995 PF00474 Sodium:solute symporter family M892_27010 PF00356 Bacterial regulatory proteins, lacI family M892_27030 PF04225 Opacity-associated protein A LysM-like domain M892_27030 PF01551 Peptidase family M23 M892_27045 PF00294 pfkB family carbohydrate kinase M892_27050 PF13737 Transposase DDE domain M892_27060 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_27075 PF02753 Pili assembly chaperone PapD, C-terminal domain M892_27075 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain M892_27080 PF13953 PapC C-terminal domain M892_27080 PF13954 PapC N-terminal domain M892_27080 PF00577 Outer membrane usher protein M892_27110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_27110 PF00672 HAMP domain M892_27110 PF02743 Cache domain M892_27140 PF02525 Flavodoxin-like fold M892_27155 PF00857 Isochorismatase family M892_27160 PF00005 ABC transporter M892_27200 PF02566 OsmC-like protein M892_27205 PF01047 MarR family M892_27210 PF00578 AhpC/TSA family M892_27210 PF10417 C-terminal domain of 1-Cys peroxiredoxin M892_27215 PF13192 Thioredoxin domain M892_27215 PF07992 Pyridine nucleotide-disulphide oxidoreductase M892_27230 PF02447 GntP family permease M892_27235 PF01261 Xylose isomerase-like TIM barrel M892_27240 PF00596 Class II Aldolase and Adducin N-terminal domain M892_27245 PF17042 Nucleotide-binding C-terminal domain M892_27245 PF07005 Sugar-binding N-terminal domain M892_27250 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M892_27250 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M892_27255 PF00455 DeoR C terminal sensor domain M892_27255 PF08220 DeoR-like helix-turn-helix domain M892_27265 PF02743 Cache domain M892_27265 PF00672 HAMP domain M892_27265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_27275 PF06445 GyrI-like small molecule binding domain M892_27280 PF01810 LysE type translocator M892_27285 PF13404 AsnC-type helix-turn-helix domain M892_27285 PF01037 Lrp/AsnC ligand binding domain M892_27295 PF13737 Transposase DDE domain M892_27335 PF04754 Putative transposase, YhgA-like M892_27390 PF13737 Transposase DDE domain M892_27405 PF13358 DDE superfamily endonuclease M892_27410 PF00933 Glycosyl hydrolase family 3 N terminal domain M892_27440 PF02368 Bacterial Ig-like domain (group 2) M892_27440 PF02369 Bacterial Ig-like domain (group 1) M892_27440 PF11924 Inverse autotransporter, beta-domain M892_27440 PF07979 Intimin C-type lectin domain M892_27440 PF01476 LysM domain M892_27450 PF00005 ABC transporter M892_27450 PF00664 ABC transporter transmembrane region M892_27465 PF01037 Lrp/AsnC ligand binding domain M892_27480 PF02371 Transposase IS116/IS110/IS902 family M892_27480 PF01548 Transposase M892_27505 PF00474 Sodium:solute symporter family M892_27515 PF14850 DNA-binding domain of Proline dehydrogenase M892_27515 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M892_27515 PF01619 Proline dehydrogenase M892_27515 PF00171 Aldehyde dehydrogenase family M892_27520 PF12833 Helix-turn-helix domain M892_27535 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M892_27535 PF01243 Pyridoxamine 5'-phosphate oxidase M892_27540 PF00512 His Kinase A (phospho-acceptor) domain M892_27540 PF02743 Cache domain M892_27540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_27545 PF02954 Bacterial regulatory protein, Fis family M892_27545 PF00158 Sigma-54 interaction domain M892_27545 PF00072 Response regulator receiver domain M892_27550 PF00529 HlyD membrane-fusion protein of T1SS M892_27655 PF13358 DDE superfamily endonuclease M892_27665 PF03358 NADPH-dependent FMN reductase M892_27670 PF00246 Zinc carboxypeptidase M892_27675 PF01418 Helix-turn-helix domain, rpiR family M892_27675 PF01380 SIS domain M892_27680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_27680 PF03466 LysR substrate binding domain M892_27685 PF00132 Bacterial transferase hexapeptide (six repeats) M892_27695 PF13718 GNAT acetyltransferase 2 M892_27695 PF05127 Helicase M892_27700 PF01609 Transposase DDE domain M892_27700 PF13006 Insertion element 4 transposase N-terminal M892_27705 PF02195 ParB-like nuclease domain M892_27705 PF08775 ParB family M892_27710 PF18607 ParA helix turn helix domain M892_27710 PF13614 AAA domain M892_27730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M892_27730 PF00005 ABC transporter M892_27740 PF00925 GTP cyclohydrolase II M892_27740 PF08719 Domain of unknown function (DUF1768) M892_27745 PF00925 GTP cyclohydrolase II M892_27745 PF08719 Domain of unknown function (DUF1768) M892_27755 PF00072 Response regulator receiver domain M892_27755 PF01627 Hpt domain M892_27755 PF00512 His Kinase A (phospho-acceptor) domain M892_27755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_27755 PF17149 Periplasmic sensor domain found in signal transduction proteins M892_27755 PF00672 HAMP domain M892_27765 PF01709 Transcriptional regulator M892_27770 PF01098 Cell cycle protein M892_27780 PF13533 Biotin-lipoyl like M892_27785 PF03466 LysR substrate binding domain M892_27785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_27795 PF00005 ABC transporter M892_27815 PF06580 Histidine kinase M892_27815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M892_27815 PF13492 GAF domain M892_27815 PF07694 5TMR of 5TMR-LYT M892_27820 PF04397 LytTr DNA-binding domain M892_27820 PF00072 Response regulator receiver domain M892_27825 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M892_27830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M892_27830 PF17200 Single Cache domain 2 M892_27830 PF00672 HAMP domain M892_27845 PF03616 Sodium/glutamate symporter M892_27865 PF01593 Flavin containing amine oxidoreductase M892_27890 PF00005 ABC transporter M892_27895 PF00155 Aminotransferase class I and II M892_27895 PF00392 Bacterial regulatory proteins, gntR family M892_27900 PF03616 Sodium/glutamate symporter M892_27925 PF03466 LysR substrate binding domain M892_27925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M892_28275 PF04002 RadC-like JAB domain M892_28315 PF03432 Relaxase/Mobilisation nuclease domain M892_28315 PF18821 Large polyvalent protein-associated domain 7 M892_28330 PF13005 zinc-finger binding domain of transposase IS66 M892_28330 PF13007 Transposase C of IS166 homeodomain M892_28330 PF03050 Transposase IS66 family M892_28330 PF13817 IS66 C-terminal element M892_28345 PF13276 HTH-like domain M892_28345 PF13333 Integrase core domain M892_28345 PF00665 Integrase core domain M892_28365 PF13333 Integrase core domain M892_28365 PF00665 Integrase core domain M892_28365 PF13276 HTH-like domain M892_28380 PF01548 Transposase M892_28380 PF02371 Transposase IS116/IS110/IS902 family M892_28395 PF01548 Transposase M892_28395 PF02371 Transposase IS116/IS110/IS902 family M892_28435 PF01751 Toprim domain M892_28435 PF01131 DNA topoisomerase M892_28445 PF02534 Type IV secretory system Conjugative DNA transfer M892_28450 PF00437 Type II/IV secretion system protein M892_28460 PF03743 Bacterial conjugation TrbI-like protein M892_28465 PF03524 Conjugal transfer protein M892_28470 PF04335 VirB8 protein M892_28495 PF03135 CagE, TrbE, VirB family, component of type IV transporter system M892_28560 PF13614 AAA domain M892_28595 PF13817 IS66 C-terminal element M892_28595 PF03050 Transposase IS66 family M892_28595 PF13005 zinc-finger binding domain of transposase IS66 M892_28595 PF13007 Transposase C of IS166 homeodomain M892_28630 PF00239 Resolvase, N terminal domain M892_28630 PF02796 Helix-turn-helix domain of resolvase M892_28675 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_28705 PF08775 ParB family M892_28705 PF02195 ParB-like nuclease domain M892_28710 PF13614 AAA domain M892_28720 PF11798 IMS family HHH motif M892_28720 PF13438 Domain of unknown function (DUF4113) M892_28720 PF11799 impB/mucB/samB family C-terminal domain M892_28720 PF00817 impB/mucB/samB family M892_28725 PF00717 Peptidase S24-like M892_28735 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M892_28745 PF13358 DDE superfamily endonuclease