M892_00030 SM00387 Histidine kinase-like ATPases M892_00030 SM01049 M892_00030 M892_00070 SM00155 Phospholipase D. Active site motifs. M892_00080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_00080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_00105 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. M892_00105 SM00382 ATPases associated with a variety of cellular activities M892_00125 SM00342 helix_turn_helix, arabinose operon control protein M892_00135 SM00382 ATPases associated with a variety of cellular activities M892_00160 SM00450 Rhodanese Homology Domain M892_00165 SM00421 helix_turn_helix, Lux Regulon M892_00165 SM00448 cheY-homologous receiver domain M892_00225 SM00387 Histidine kinase-like ATPases M892_00230 SM00448 cheY-homologous receiver domain M892_00230 SM00862 Transcriptional regulatory protein, C terminal M892_00240 SM00487 DEAD-like helicases superfamily M892_00240 SM00490 helicase superfamily c-terminal domain M892_00245 SM00363 S4 RNA-binding domain M892_00275 SM00382 ATPases associated with a variety of cellular activities M892_00380 SM00448 cheY-homologous receiver domain M892_00385 SM00387 Histidine kinase-like ATPases M892_00405 SM00267 diguanylate cyclase M892_00425 SM00530 Helix-turn-helix XRE-family like proteins M892_00435 SM00530 Helix-turn-helix XRE-family like proteins M892_00440 SM00052 Putative diguanylate phosphodiesterase M892_00455 SM00382 ATPases associated with a variety of cellular activities M892_00460 SM00382 ATPases associated with a variety of cellular activities M892_00555 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M892_00565 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_00725 SM00448 cheY-homologous receiver domain M892_00730 SM00052 Putative diguanylate phosphodiesterase M892_00730 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M892_00730 SM00091 PAS domain M892_00730 SM00267 diguanylate cyclase M892_00735 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M892_00770 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. M892_00815 SM00382 ATPases associated with a variety of cellular activities M892_00820 SM00382 ATPases associated with a variety of cellular activities M892_00855 SM00267 diguanylate cyclase M892_00855 SM01079 M892_00855 M892_00860 SM00479 M892_00860 M892_00885 SM00458 Ricin-type beta-trefoil M892_00900 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M892_00930 SM00382 ATPases associated with a variety of cellular activities M892_00930 SM00487 DEAD-like helicases superfamily M892_00930 SM00490 helicase superfamily c-terminal domain M892_00930 SM00847 Helicase associated domain (HA2) Add an annotation M892_00950 SM00245 tail specific protease M892_00965 SM00028 Tetratricopeptide repeats M892_01060 SM00999 Aerolysin toxin M892_01070 SM00999 Aerolysin toxin M892_01080 SM00862 Transcriptional regulatory protein, C terminal M892_01140 SM00100 Cyclic nucleotide-monophosphate binding domain M892_01140 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_01145 SM00479 M892_01145 M892_01270 SM00091 PAS domain M892_01270 SM00387 Histidine kinase-like ATPases M892_01275 SM00448 cheY-homologous receiver domain M892_01290 SM01350 M892_01290 M892_01310 SM00382 ATPases associated with a variety of cellular activities M892_01325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_01325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_01385 SM00062 Bacterial periplasmic substrate-binding proteins M892_01385 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M892_01415 SM00062 Bacterial periplasmic substrate-binding proteins M892_01425 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_01425 SM00895 M892_01425 M892_01460 SM00495 Chitin-binding domain type 3 M892_01500 SM00028 Tetratricopeptide repeats M892_01500 SM00267 diguanylate cyclase M892_01550 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase M892_01580 SM00382 ATPases associated with a variety of cellular activities M892_01595 SM00062 Bacterial periplasmic substrate-binding proteins M892_01655 SM00945 ProQ/FINO family M892_01660 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M892_01660 SM00245 tail specific protease M892_01700 SM00981 M892_01700 M892_01710 SM00382 ATPases associated with a variety of cellular activities M892_01825 SM00479 M892_01825 M892_01835 SM00387 Histidine kinase-like ATPases M892_01835 SM00388 His Kinase A (phosphoacceptor) domain M892_01835 SM00448 cheY-homologous receiver domain M892_01840 SM00897 FIST N domain M892_01840 SM01204 M892_01840 M892_01885 SM00100 Cyclic nucleotide-monophosphate binding domain M892_01885 SM00419 helix_turn_helix, cAMP Regulatory protein M892_01905 SM00047 Lysozyme subfamily 2 M892_01975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M892_02015 SM00382 ATPases associated with a variety of cellular activities M892_02030 SM00387 Histidine kinase-like ATPases M892_02030 SM00388 His Kinase A (phosphoacceptor) domain M892_02035 SM00382 ATPases associated with a variety of cellular activities M892_02035 SM00448 cheY-homologous receiver domain M892_02050 SM00382 ATPases associated with a variety of cellular activities M892_02060 SM00852 Probable molybdopterin binding domain M892_02080 SM01144 M892_02080 M892_02130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_02145 SM00267 diguanylate cyclase M892_02150 SM00448 cheY-homologous receiver domain M892_02210 SM00382 ATPases associated with a variety of cellular activities M892_02210 SM00448 cheY-homologous receiver domain M892_02285 SM00267 diguanylate cyclase M892_02290 SM00387 Histidine kinase-like ATPases M892_02290 SM00388 His Kinase A (phosphoacceptor) domain M892_02290 SM00448 cheY-homologous receiver domain M892_02310 SM01266 M892_02310 M892_02315 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M892_02315 SM00091 PAS domain M892_02315 SM00387 Histidine kinase-like ATPases M892_02315 SM00388 His Kinase A (phosphoacceptor) domain M892_02315 SM00448 cheY-homologous receiver domain M892_02325 SM01118 M892_02325 M892_02340 SM00347 helix_turn_helix multiple antibiotic resistance protein M892_02390 SM00495 Chitin-binding domain type 3 M892_02525 SM01021 Bacteriorhodopsin-like protein M892_02565 SM01022 M892_02565 M892_02640 SM00382 ATPases associated with a variety of cellular activities M892_02665 SM00855 Phosphoglycerate mutase family M892_02685 SM00903 Flavin reductase like domain M892_02705 SM00479 M892_02705 M892_02740 SM00411 bacterial (prokaryotic) histone like domain M892_02795 SM00382 ATPases associated with a variety of cellular activities M892_02800 SM00382 ATPases associated with a variety of cellular activities M892_02830 SM00873 B3/4 domain M892_02830 SM00874 tRNA synthetase B5 domain M892_02830 SM00896 Ferredoxin-fold anticodon binding domain M892_02840 SM00530 Helix-turn-helix XRE-family like proteins M892_02890 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain M892_02905 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_02905 SM00866 M892_02905 M892_02990 SM00671 Sel1-like repeats. M892_03100 SM00487 DEAD-like helicases superfamily M892_03100 SM00490 helicase superfamily c-terminal domain M892_03105 SM00919 Malic enzyme, NAD binding domain M892_03105 SM01274 M892_03105 M892_03120 SM00267 diguanylate cyclase M892_03460 SM00530 Helix-turn-helix XRE-family like proteins M892_03465 SM00530 Helix-turn-helix XRE-family like proteins M892_03620 SM00091 PAS domain M892_03620 SM00382 ATPases associated with a variety of cellular activities M892_03675 SM00052 Putative diguanylate phosphodiesterase M892_03690 SM00421 helix_turn_helix, Lux Regulon M892_03725 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_03750 SM00100 Cyclic nucleotide-monophosphate binding domain M892_03750 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_03755 SM00479 M892_03755 M892_03760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_03760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_03770 SM00347 helix_turn_helix multiple antibiotic resistance protein M892_03775 SM00421 helix_turn_helix, Lux Regulon M892_03825 SM00382 ATPases associated with a variety of cellular activities M892_03845 SM00382 ATPases associated with a variety of cellular activities M892_03850 SM00382 ATPases associated with a variety of cellular activities M892_03880 SM01131 M892_03880 M892_03970 SM00840 M892_03970 M892_04035 SM00528 Domain in histone-like proteins of HNS family M892_04135 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_04135 SM00876 Biotin and Thiamin Synthesis associated domain M892_04175 SM00382 ATPases associated with a variety of cellular activities M892_04185 SM00843 M892_04185 M892_04190 SM00344 helix_turn_helix ASNC type M892_04195 SM01002 Alanine dehydrogenase/PNT, C-terminal domain M892_04195 SM01003 Alanine dehydrogenase/PNT, N-terminal domain M892_04310 SM00062 Bacterial periplasmic substrate-binding proteins M892_04340 SM00382 ATPases associated with a variety of cellular activities M892_04380 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_04380 SM00895 M892_04380 M892_04385 SM00347 helix_turn_helix multiple antibiotic resistance protein M892_04405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_04405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_04515 SM00382 ATPases associated with a variety of cellular activities M892_04670 SM00342 helix_turn_helix, arabinose operon control protein M892_04855 SM00257 Lysin motif M892_04935 SM00862 Transcriptional regulatory protein, C terminal M892_04940 SM00052 Putative diguanylate phosphodiesterase M892_05030 SM00387 Histidine kinase-like ATPases M892_05030 SM00388 His Kinase A (phosphoacceptor) domain M892_05030 SM00448 cheY-homologous receiver domain M892_05065 SM00028 Tetratricopeptide repeats M892_05120 SM00382 ATPases associated with a variety of cellular activities M892_05125 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M892_05130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_05210 SM00448 cheY-homologous receiver domain M892_05210 SM00862 Transcriptional regulatory protein, C terminal M892_05220 SM00354 helix_turn _helix lactose operon repressor M892_05255 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M892_05255 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M892_05255 SM00493 M892_05255 M892_05290 SM00316 Ribosomal protein S1-like RNA-binding domain M892_05295 SM00382 ATPases associated with a variety of cellular activities M892_05295 SM01086 C-terminal, D2-small domain, of ClpB protein M892_05305 SM00357 Cold shock protein domain M892_05330 SM00491 M892_05330 M892_05365 SM00062 Bacterial periplasmic substrate-binding proteins M892_05365 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M892_05370 SM00382 ATPases associated with a variety of cellular activities M892_05410 SM00763 PrkA AAA domain M892_05440 SM00382 ATPases associated with a variety of cellular activities M892_05445 SM00849 Metallo-beta-lactamase superfamily M892_05460 SM00382 ATPases associated with a variety of cellular activities M892_05475 SM00487 DEAD-like helicases superfamily M892_05475 SM00490 helicase superfamily c-terminal domain M892_05475 SM00982 M892_05475 M892_05475 SM01058 CarD-like/TRCF domain M892_05525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_05525 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_05550 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_05615 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_05620 SM00382 ATPases associated with a variety of cellular activities M892_05675 SM00450 Rhodanese Homology Domain M892_05785 SM00062 Bacterial periplasmic substrate-binding proteins M892_05785 SM00267 diguanylate cyclase M892_05810 SM00344 helix_turn_helix ASNC type M892_05850 SM00978 M892_05850 M892_05860 SM00563 Phosphate acyltransferases M892_05885 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M892_05915 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M892_05920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M892_05925 SM01144 M892_05925 M892_05935 SM00278 Helix-hairpin-helix DNA-binding motif class 1 M892_05945 SM00411 bacterial (prokaryotic) histone like domain M892_05950 SM00382 ATPases associated with a variety of cellular activities M892_05950 SM00464 Found in ATP-dependent protease La (LON) M892_05955 SM00382 ATPases associated with a variety of cellular activities M892_05955 SM00994 ClpX C4-type zinc finger M892_05955 SM01086 C-terminal, D2-small domain, of ClpB protein M892_06015 SM00487 DEAD-like helicases superfamily M892_06015 SM00490 helicase superfamily c-terminal domain M892_06040 SM00823 Phosphopantetheine attachment site M892_06135 SM00474 3'-5' exonuclease M892_06165 SM00487 DEAD-like helicases superfamily M892_06165 SM00491 M892_06165 M892_06185 SM00836 DALR anticodon binding domain M892_06185 SM01016 Arginyl tRNA synthetase N terminal dom M892_06210 SM00899 M892_06210 M892_06215 SM00342 helix_turn_helix, arabinose operon control protein M892_06225 SM00382 ATPases associated with a variety of cellular activities M892_06235 SM00881 CoA binding domain M892_06250 SM00861 Transketolase, pyrimidine binding domain M892_06365 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. M892_06385 SM00387 Histidine kinase-like ATPases M892_06390 SM00862 Transcriptional regulatory protein, C terminal M892_06435 SM00244 prohibitin homologues M892_06475 SM00771 ZipA, C-terminal domain (FtsZ-binding) M892_06550 SM00047 Lysozyme subfamily 2 M892_06595 SM00138 Methyltransferase, chemotaxis proteins M892_06600 SM00260 Two component signalling adaptor domain M892_06600 SM00448 cheY-homologous receiver domain M892_06605 SM00858 M892_06605 M892_06685 SM01081 Putative carbohydrate binding domain M892_06720 SM00463 Small MutS-related domain M892_06725 SM00363 S4 RNA-binding domain M892_06760 SM00937 M892_06760 M892_06780 SM01400 M892_06780 M892_06820 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_06835 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_06835 SM01091 Transporter associated domain M892_06895 SM00936 Penicillin-binding protein 5, C-terminal domain M892_06905 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_06930 SM00642 Alpha-amylase domain M892_06940 SM00354 helix_turn _helix lactose operon repressor M892_06950 SM00382 ATPases associated with a variety of cellular activities M892_06950 SM00930 M892_06950 M892_07000 SM00028 Tetratricopeptide repeats M892_07005 SM00267 diguanylate cyclase M892_07015 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M892_07015 SM00475 5'-3' exonuclease M892_07055 SM00981 M892_07055 M892_07080 SM00861 Transketolase, pyrimidine binding domain M892_07130 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase M892_07195 SM01211 M892_07195 M892_07200 SM00062 Bacterial periplasmic substrate-binding proteins M892_07265 SM00271 DnaJ molecular chaperone homology domain M892_07340 SM00530 Helix-turn-helix XRE-family like proteins M892_07375 SM00487 DEAD-like helicases superfamily M892_07520 SM00495 Chitin-binding domain type 3 M892_07540 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_07540 SM01240 M892_07540 M892_07555 SM00382 ATPases associated with a variety of cellular activities M892_07560 SM00564 beta-propeller repeat M892_07580 SM00530 Helix-turn-helix XRE-family like proteins M892_07590 SM00562 M892_07590 M892_07620 SM00271 DnaJ molecular chaperone homology domain M892_07670 SM01323 M892_07670 M892_07690 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_07740 SM00382 ATPases associated with a variety of cellular activities M892_07770 SM00091 PAS domain M892_07770 SM00387 Histidine kinase-like ATPases M892_07770 SM00388 His Kinase A (phosphoacceptor) domain M892_07775 SM00448 cheY-homologous receiver domain M892_07775 SM00862 Transcriptional regulatory protein, C terminal M892_07875 SM00382 ATPases associated with a variety of cellular activities M892_07875 SM01086 C-terminal, D2-small domain, of ClpB protein M892_07885 SM00363 S4 RNA-binding domain M892_07895 SM00062 Bacterial periplasmic substrate-binding proteins M892_07905 SM00830 Chorismate mutase type II M892_07925 SM00382 ATPases associated with a variety of cellular activities M892_07940 SM00830 Chorismate mutase type II M892_07985 SM00448 cheY-homologous receiver domain M892_07985 SM00850 LytTr DNA-binding domain M892_08010 SM00904 Riboflavin kinase M892_08025 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_08065 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. M892_08075 SM00927 DNA mismatch repair enzyme MutH M892_08100 SM00382 ATPases associated with a variety of cellular activities M892_08110 SM00937 M892_08110 M892_08145 SM00487 DEAD-like helicases superfamily M892_08145 SM00490 helicase superfamily c-terminal domain M892_08180 SM00986 Uracil DNA glycosylase superfamily M892_08180 SM00987 UreE urease accessory protein, C-terminal domain M892_08185 SM00518 AP endonuclease family 2 M892_08235 SM00448 cheY-homologous receiver domain M892_08235 SM00862 Transcriptional regulatory protein, C terminal M892_08245 SM00073 Histidine Phosphotransfer domain M892_08245 SM00091 PAS domain M892_08245 SM00387 Histidine kinase-like ATPases M892_08245 SM00388 His Kinase A (phosphoacceptor) domain M892_08245 SM00448 cheY-homologous receiver domain M892_08250 SM00091 PAS domain M892_08250 SM00267 diguanylate cyclase M892_08255 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_08325 SM00851 MGS-like domain M892_08325 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M892_08330 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain M892_08345 SM00957 SecA DEAD-like domain M892_08345 SM00958 SecA preprotein cross-linking domain M892_08360 SM00864 Tubulin/FtsZ family, GTPase domain M892_08360 SM00865 Tubulin/FtsZ family, C-terminal domain M892_08365 SM00842 Cell division protein FtsA M892_08445 SM00749 bacterial OsmY and nodulation domain M892_08495 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M892_08500 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M892_08505 SM00434 DNA Topoisomerase IV M892_08510 SM00387 Histidine kinase-like ATPases M892_08510 SM00433 TopoisomeraseII M892_08550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_08560 SM00880 M892_08560 M892_08560 SM01118 M892_08560 M892_08575 SM00287 Bacterial SH3 domain homologues M892_08585 SM00382 ATPases associated with a variety of cellular activities M892_08605 SM00905 Dihydroneopterin aldolase M892_08610 SM01207 M892_08610 M892_08635 SM00400 zinc finger M892_08635 SM00493 M892_08635 M892_08635 SM00766 DNA primase DnaG DnaB-binding M892_08705 SM00563 Phosphate acyltransferases M892_08730 SM00420 helix_turn_helix, Deoxyribose operon repressor M892_08730 SM01134 M892_08730 M892_08740 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_08740 SM00895 M892_08740 M892_08745 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M892_08745 SM00267 diguanylate cyclase M892_08775 SM00014 Acid phosphatase homologues M892_08785 SM00917 LeuA allosteric (dimerisation) domain M892_08790 SM01329 M892_08790 M892_08810 SM00271 DnaJ molecular chaperone homology domain M892_08830 SM00650 Ribosomal RNA adenine dimethylases M892_08915 SM00382 ATPases associated with a variety of cellular activities M892_09000 SM00382 ATPases associated with a variety of cellular activities M892_09055 SM00487 DEAD-like helicases superfamily M892_09055 SM00490 helicase superfamily c-terminal domain M892_09095 SM00662 RNA polymerases D M892_09100 SM00363 S4 RNA-binding domain M892_09100 SM01390 M892_09100 M892_09165 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M892_09170 SM01374 M892_09170 M892_09190 SM00322 K homology RNA-binding domain M892_09205 SM01382 M892_09205 M892_09205 SM01383 M892_09205 M892_09225 SM01403 M892_09225 M892_09235 SM00487 DEAD-like helicases superfamily M892_09235 SM00490 helicase superfamily c-terminal domain M892_09240 SM00354 helix_turn _helix lactose operon repressor M892_09255 SM00382 ATPases associated with a variety of cellular activities M892_09255 SM01086 C-terminal, D2-small domain, of ClpB protein M892_09315 SM00984 UDP binding domain M892_09395 SM00984 UDP binding domain M892_09470 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_09555 SM00672 Putative lipopolysaccharide-modifying enzyme. M892_09560 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain M892_09560 SM01232 M892_09560 M892_09685 SM00028 Tetratricopeptide repeats M892_09690 SM00072 Guanylate kinase homologues. M892_09695 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M892_09695 SM00954 Region found in RelA / SpoT proteins M892_09705 SM00487 DEAD-like helicases superfamily M892_09705 SM00490 helicase superfamily c-terminal domain M892_09720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_09720 SM00387 Histidine kinase-like ATPases M892_09720 SM00388 His Kinase A (phosphoacceptor) domain M892_09730 SM00448 cheY-homologous receiver domain M892_09730 SM00862 Transcriptional regulatory protein, C terminal M892_09745 SM00316 Ribosomal protein S1-like RNA-binding domain M892_09745 SM00732 Likely ribonuclease with RNase H fold. M892_09825 SM00382 ATPases associated with a variety of cellular activities M892_09840 SM00363 S4 RNA-binding domain M892_09895 SM01230 M892_09895 M892_09905 SM00091 PAS domain M892_09905 SM00387 Histidine kinase-like ATPases M892_09905 SM00388 His Kinase A (phosphoacceptor) domain M892_09910 SM00382 ATPases associated with a variety of cellular activities M892_09910 SM00448 cheY-homologous receiver domain M892_09915 SM00052 Putative diguanylate phosphodiesterase M892_09915 SM00267 diguanylate cyclase M892_09915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_09925 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_09960 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs M892_09960 SM00474 3'-5' exonuclease M892_09960 SM00475 5'-3' exonuclease M892_09960 SM00482 DNA polymerase A domain M892_09970 SM01004 Delta-aminolevulinic acid dehydratase M892_10020 SM00052 Putative diguanylate phosphodiesterase M892_10020 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M892_10020 SM00091 PAS domain M892_10020 SM00267 diguanylate cyclase M892_10070 SM00495 Chitin-binding domain type 3 M892_10070 SM00636 M892_10070 M892_10090 SM00257 Lysin motif M892_10170 SM00052 Putative diguanylate phosphodiesterase M892_10170 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M892_10170 SM00091 PAS domain M892_10170 SM00267 diguanylate cyclase M892_10175 SM00344 helix_turn_helix ASNC type M892_10200 SM00357 Cold shock protein domain M892_10270 SM00220 Serine/Threonine protein kinases, catalytic domain M892_10325 SM00382 ATPases associated with a variety of cellular activities M892_10465 SM00829 Enoylreductase M892_10525 SM00387 Histidine kinase-like ATPases M892_10525 SM00433 TopoisomeraseII M892_10535 SM00480 DNA polymerase III beta subunit M892_10540 SM00382 ATPases associated with a variety of cellular activities M892_10540 SM00760 Bacterial dnaA protein helix-turn-helix domain M892_10545 SM00062 Bacterial periplasmic substrate-binding proteins M892_10545 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M892_10580 SM01228 M892_10580 M892_10595 SM00470 ParB-like nuclease domain M892_10635 SM00382 ATPases associated with a variety of cellular activities M892_10655 SM00062 Bacterial periplasmic substrate-binding proteins M892_10695 SM00382 ATPases associated with a variety of cellular activities M892_10700 SM00267 diguanylate cyclase M892_10710 SM00563 Phosphate acyltransferases M892_10790 SM00257 Lysin motif M892_10810 SM01001 AIR carboxylase M892_10925 SM00876 Biotin and Thiamin Synthesis associated domain M892_10990 SM00342 helix_turn_helix, arabinose operon control protein M892_11000 SM00341 Helicase and RNase D C-terminal M892_11000 SM00487 DEAD-like helicases superfamily M892_11000 SM00490 helicase superfamily c-terminal domain M892_11000 SM00956 M892_11000 M892_11025 SM00487 DEAD-like helicases superfamily M892_11025 SM00490 helicase superfamily c-terminal domain M892_11035 SM00357 Cold shock protein domain M892_11035 SM00382 ATPases associated with a variety of cellular activities M892_11035 SM00959 Rho termination factor, N-terminal domain M892_11130 SM01219 M892_11130 M892_11165 SM00052 Putative diguanylate phosphodiesterase M892_11165 SM00267 diguanylate cyclase M892_11165 SM00897 FIST N domain M892_11165 SM01204 M892_11165 M892_11170 SM01144 M892_11170 M892_11205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_11210 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M892_11285 SM00382 ATPases associated with a variety of cellular activities M892_11285 SM00962 SRP54-type protein, GTPase domain M892_11285 SM00963 SRP54-type protein, helical bundle domain M892_11290 SM00382 ATPases associated with a variety of cellular activities M892_11305 SM00450 Rhodanese Homology Domain M892_11340 SM00563 Phosphate acyltransferases M892_11400 SM00360 RNA recognition motif M892_11455 SM00155 Phospholipase D. Active site motifs. M892_11505 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. M892_11505 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. M892_11510 SM00649 Ribosomal protein L11/L12 M892_11535 SM00663 RNA polymerase I subunit A N-terminus M892_11565 SM00986 Uracil DNA glycosylase superfamily M892_11565 SM00987 UreE urease accessory protein, C-terminal domain M892_11585 SM00411 bacterial (prokaryotic) histone like domain M892_11595 SM01209 M892_11595 M892_11595 SM01210 M892_11595 M892_11600 SM00798 AICARFT/IMPCHase bienzyme M892_11600 SM00851 MGS-like domain M892_11610 SM00422 helix_turn_helix, mercury resistance M892_11615 SM00862 Transcriptional regulatory protein, C terminal M892_11700 SM00382 ATPases associated with a variety of cellular activities M892_11730 SM00267 diguanylate cyclase M892_11750 SM00878 Biotin carboxylase C-terminal domain M892_11770 SM00479 M892_11770 M892_11785 SM00387 Histidine kinase-like ATPases M892_11785 SM00388 His Kinase A (phosphoacceptor) domain M892_11785 SM00448 cheY-homologous receiver domain M892_11820 SM00421 helix_turn_helix, Lux Regulon M892_11820 SM00448 cheY-homologous receiver domain M892_11855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_11855 SM00387 Histidine kinase-like ATPases M892_11855 SM00388 His Kinase A (phosphoacceptor) domain M892_11860 SM00448 cheY-homologous receiver domain M892_11860 SM00862 Transcriptional regulatory protein, C terminal M892_11895 SM00883 Chaperonin 10 Kd subunit M892_11925 SM00841 Elongation factor P, C-terminal M892_11925 SM01185 M892_11925 M892_11985 SM00971 Serine acetyltransferase, N-terminal M892_12000 SM00450 Rhodanese Homology Domain M892_12015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_12015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_12050 SM00479 M892_12050 M892_12125 SM00257 Lysin motif M892_12125 SM00646 M892_12125 M892_12130 SM00853 MutL C terminal dimerisation domain M892_12130 SM01340 M892_12130 M892_12150 SM00244 prohibitin homologues M892_12155 SM00244 prohibitin homologues M892_12165 SM00788 Adenylosuccinate synthetase M892_12170 SM00671 Sel1-like repeats. M892_12185 SM00316 Ribosomal protein S1-like RNA-binding domain M892_12185 SM00357 Cold shock protein domain M892_12185 SM00955 M892_12185 M892_12190 SM00967 RNA 2'-O ribose methyltransferase substrate binding M892_12230 SM01150 M892_12230 M892_12235 SM00100 Cyclic nucleotide-monophosphate binding domain M892_12235 SM00419 helix_turn_helix, cAMP Regulatory protein M892_12260 SM00382 ATPases associated with a variety of cellular activities M892_12295 SM00320 WD40 repeats M892_12335 SM00838 Elongation factor G C-terminus M892_12335 SM00889 Elongation factor G, domain IV M892_12370 SM00919 Malic enzyme, NAD binding domain M892_12370 SM01274 M892_12370 M892_12410 SM00859 Semialdehyde dehydrogenase, NAD binding domain M892_12460 SM00842 Cell division protein FtsA M892_12480 SM00965 Secretin and TonB N terminus short domain M892_12545 SM01005 Alanine racemase, C-terminal domain M892_12650 SM01018 B12 binding domain M892_12680 SM00421 helix_turn_helix, Lux Regulon M892_12690 SM00052 Putative diguanylate phosphodiesterase M892_12690 SM00267 diguanylate cyclase M892_12710 SM00965 Secretin and TonB N terminus short domain M892_12720 SM00028 Tetratricopeptide repeats M892_12725 SM00382 ATPases associated with a variety of cellular activities M892_12795 SM00316 Ribosomal protein S1-like RNA-binding domain M892_12815 SM00670 Large family of predicted nucleotide-binding domains M892_12820 SM00487 DEAD-like helicases superfamily M892_12820 SM00490 helicase superfamily c-terminal domain M892_12855 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_12855 SM00924 MgtE intracellular N domain M892_12895 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_12905 SM00382 ATPases associated with a variety of cellular activities M892_12940 SM00563 Phosphate acyltransferases M892_12995 SM00347 helix_turn_helix multiple antibiotic resistance protein M892_13060 SM00495 Chitin-binding domain type 3 M892_13090 SM00354 helix_turn _helix lactose operon repressor M892_13095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M892_13170 SM00478 endonuclease III M892_13170 SM00525 M892_13170 M892_13200 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_13215 SM01152 M892_13215 M892_13235 SM00382 ATPases associated with a variety of cellular activities M892_13245 SM00732 Likely ribonuclease with RNase H fold. M892_13270 SM00731 SprT homologues. M892_13285 SM00861 Transketolase, pyrimidine binding domain M892_13295 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M892_13415 SM00838 Elongation factor G C-terminus M892_13425 SM00358 Double-stranded RNA binding motif M892_13425 SM00535 Ribonuclease III family M892_13455 SM00073 Histidine Phosphotransfer domain M892_13455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_13455 SM00387 Histidine kinase-like ATPases M892_13455 SM00388 His Kinase A (phosphoacceptor) domain M892_13455 SM00448 cheY-homologous receiver domain M892_13465 SM00954 Region found in RelA / SpoT proteins M892_13480 SM01192 M892_13480 M892_13480 SM01193 M892_13480 M892_13515 SM00257 Lysin motif M892_13530 SM00533 DNA-binding domain of DNA mismatch repair MUTS family M892_13530 SM00534 ATPase domain of DNA mismatch repair MUTS family M892_13540 SM00382 ATPases associated with a variety of cellular activities M892_13550 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain M892_13625 SM00421 helix_turn_helix, Lux Regulon M892_13645 SM00829 Enoylreductase M892_13675 SM01091 Transporter associated domain M892_13685 SM00382 ATPases associated with a variety of cellular activities M892_13685 SM00962 SRP54-type protein, GTPase domain M892_13685 SM00963 SRP54-type protein, helical bundle domain M892_13760 SM00644 M892_13760 M892_13765 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_13765 SM00895 M892_13765 M892_13805 SM00947 Carbonic anhydrase M892_13815 SM00382 ATPases associated with a variety of cellular activities M892_13870 SM00487 DEAD-like helicases superfamily M892_13870 SM00490 helicase superfamily c-terminal domain M892_13870 SM00847 Helicase associated domain (HA2) Add an annotation M892_13905 SM00938 Nitrogen regulatory protein P-II M892_13925 SM00382 ATPases associated with a variety of cellular activities M892_13935 SM01068 Putative carbohydrate binding domain M892_13955 SM00382 ATPases associated with a variety of cellular activities M892_13960 SM00382 ATPases associated with a variety of cellular activities M892_13980 SM00091 PAS domain M892_13980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_13980 SM00387 Histidine kinase-like ATPases M892_13980 SM00388 His Kinase A (phosphoacceptor) domain M892_13980 SM00448 cheY-homologous receiver domain M892_14025 SM00363 S4 RNA-binding domain M892_14055 SM01103 M892_14055 M892_14065 SM00382 ATPases associated with a variety of cellular activities M892_14105 SM00316 Ribosomal protein S1-like RNA-binding domain M892_14125 SM01387 M892_14125 M892_14130 SM00316 Ribosomal protein S1-like RNA-binding domain M892_14130 SM00322 K homology RNA-binding domain M892_14135 SM00028 Tetratricopeptide repeats M892_14140 SM00347 helix_turn_helix multiple antibiotic resistance protein M892_14160 SM00052 Putative diguanylate phosphodiesterase M892_14160 SM00091 PAS domain M892_14160 SM00267 diguanylate cyclase M892_14210 SM01133 M892_14210 M892_14215 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain M892_14245 SM00382 ATPases associated with a variety of cellular activities M892_14250 SM00838 Elongation factor G C-terminus M892_14250 SM00889 Elongation factor G, domain IV M892_14275 SM00421 helix_turn_helix, Lux Regulon M892_14365 SM00028 Tetratricopeptide repeats M892_14410 SM01038 Beta galactosidase small chain M892_14425 SM00354 helix_turn _helix lactose operon repressor M892_14470 SM00354 helix_turn _helix lactose operon repressor M892_14525 SM00420 helix_turn_helix, Deoxyribose operon repressor M892_14525 SM01134 M892_14525 M892_14610 SM00257 Lysin motif M892_14675 SM00464 Found in ATP-dependent protease La (LON) M892_14730 SM00900 M892_14730 M892_14765 SM00267 diguanylate cyclase M892_14765 SM00448 cheY-homologous receiver domain M892_14775 SM00487 DEAD-like helicases superfamily M892_14775 SM00490 helicase superfamily c-terminal domain M892_14795 SM00495 Chitin-binding domain type 3 M892_14795 SM00636 M892_14795 M892_14880 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M892_14925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. M892_14935 SM00935 Outer membrane protein (OmpH-like) M892_14965 SM00481 DNA polymerase alpha chain like domain M892_14975 SM00977 TilS substrate C-terminal domain M892_14985 SM00938 Nitrogen regulatory protein P-II M892_15000 SM00257 Lysin motif M892_15005 SM00849 Metallo-beta-lactamase superfamily M892_15020 SM00479 M892_15020 M892_15100 SM00028 Tetratricopeptide repeats M892_15130 SM01130 M892_15130 M892_15230 SM00382 ATPases associated with a variety of cellular activities M892_15235 SM00387 Histidine kinase-like ATPases M892_15235 SM00388 His Kinase A (phosphoacceptor) domain M892_15240 SM00382 ATPases associated with a variety of cellular activities M892_15240 SM00448 cheY-homologous receiver domain M892_15265 SM00382 ATPases associated with a variety of cellular activities M892_15330 SM00382 ATPases associated with a variety of cellular activities M892_15330 SM00962 SRP54-type protein, GTPase domain M892_15345 SM00448 cheY-homologous receiver domain M892_15355 SM00073 Histidine Phosphotransfer domain M892_15355 SM00260 Two component signalling adaptor domain M892_15355 SM00387 Histidine kinase-like ATPases M892_15355 SM01231 M892_15355 M892_15360 SM00448 cheY-homologous receiver domain M892_15370 SM00260 Two component signalling adaptor domain M892_15375 SM00260 Two component signalling adaptor domain M892_15385 SM00382 ATPases associated with a variety of cellular activities M892_15470 SM00855 Phosphoglycerate mutase family M892_15475 SM00463 Small MutS-related domain M892_15525 SM00825 Beta-ketoacyl synthase M892_15535 SM00859 Semialdehyde dehydrogenase, NAD binding domain M892_15590 SM00448 cheY-homologous receiver domain M892_15610 SM00382 ATPases associated with a variety of cellular activities M892_15620 SM00493 M892_15620 M892_15745 SM00098 Alkaline phosphatase homologues M892_15785 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M892_15805 SM00870 M892_15805 M892_15825 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M892_15825 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M892_15825 SM00493 M892_15825 M892_15915 SM00859 Semialdehyde dehydrogenase, NAD binding domain M892_15990 SM00267 diguanylate cyclase M892_16055 SM00479 M892_16055 M892_16080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_16125 SM00478 endonuclease III M892_16125 SM00525 M892_16125 M892_16135 SM00900 M892_16135 M892_16170 SM00487 DEAD-like helicases superfamily M892_16170 SM00490 helicase superfamily c-terminal domain M892_16180 SM00382 ATPases associated with a variety of cellular activities M892_16180 SM00448 cheY-homologous receiver domain M892_16205 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_16210 SM00852 Probable molybdopterin binding domain M892_16280 SM00382 ATPases associated with a variety of cellular activities M892_16295 SM00267 diguanylate cyclase M892_16320 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_16355 SM00226 Low molecular weight phosphatase family M892_16370 SM00316 Ribosomal protein S1-like RNA-binding domain M892_16375 SM00363 S4 RNA-binding domain M892_16415 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. M892_16420 SM00822 M892_16420 M892_16430 SM00825 Beta-ketoacyl synthase M892_16605 SM00260 Two component signalling adaptor domain M892_16605 SM00448 cheY-homologous receiver domain M892_16610 SM00481 DNA polymerase alpha chain like domain M892_16625 SM00822 M892_16625 M892_16640 SM00316 Ribosomal protein S1-like RNA-binding domain M892_16645 SM00411 bacterial (prokaryotic) histone like domain M892_16655 SM00028 Tetratricopeptide repeats M892_16660 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family M892_16765 SM00382 ATPases associated with a variety of cellular activities M892_16785 SM00479 M892_16785 M892_16810 SM00671 Sel1-like repeats. M892_16920 SM00220 Serine/Threonine protein kinases, catalytic domain M892_16920 SM00364 Leucine-rich repeats, bacterial type M892_16920 SM00369 Leucine-rich repeats, typical (most populated) subfamily M892_16925 SM00387 Histidine kinase-like ATPases M892_16925 SM00388 His Kinase A (phosphoacceptor) domain M892_16930 SM00448 cheY-homologous receiver domain M892_16930 SM00862 Transcriptional regulatory protein, C terminal M892_16950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_16950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_16995 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_17000 SM00052 Putative diguanylate phosphodiesterase M892_17000 SM00091 PAS domain M892_17050 SM00387 Histidine kinase-like ATPases M892_17050 SM00388 His Kinase A (phosphoacceptor) domain M892_17050 SM00448 cheY-homologous receiver domain M892_17100 SM00481 DNA polymerase alpha chain like domain M892_17115 SM00363 S4 RNA-binding domain M892_17125 SM00841 Elongation factor P, C-terminal M892_17125 SM01185 M892_17125 M892_17135 SM00486 DNA polymerase type-B family M892_17140 SM00421 helix_turn_helix, Lux Regulon M892_17140 SM00448 cheY-homologous receiver domain M892_17190 SM00852 Probable molybdopterin binding domain M892_17220 SM00434 DNA Topoisomerase IV M892_17315 SM00849 Metallo-beta-lactamase superfamily M892_17800 SM00382 ATPases associated with a variety of cellular activities M892_17865 SM00382 ATPases associated with a variety of cellular activities M892_17895 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins M892_17895 SM00495 Chitin-binding domain type 3 M892_17895 SM00636 M892_17895 M892_17920 SM00267 diguanylate cyclase M892_17945 SM00354 helix_turn _helix lactose operon repressor M892_17975 SM00382 ATPases associated with a variety of cellular activities M892_17980 SM00354 helix_turn _helix lactose operon repressor M892_18005 SM00267 diguanylate cyclase M892_18030 SM00829 Enoylreductase M892_18090 SM00344 helix_turn_helix ASNC type M892_18100 SM00495 Chitin-binding domain type 3 M892_18295 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_18305 SM00347 helix_turn_helix multiple antibiotic resistance protein M892_18340 SM00822 M892_18340 M892_18360 SM00014 Acid phosphatase homologues M892_18390 SM00382 ATPases associated with a variety of cellular activities M892_18540 SM00487 DEAD-like helicases superfamily M892_18645 SM00871 Bacterial transcription activator, effector binding domain M892_18695 SM00448 cheY-homologous receiver domain M892_18695 SM00862 Transcriptional regulatory protein, C terminal M892_18700 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_18700 SM00387 Histidine kinase-like ATPases M892_18700 SM00388 His Kinase A (phosphoacceptor) domain M892_18785 SM00382 ATPases associated with a variety of cellular activities M892_18825 SM00849 Metallo-beta-lactamase superfamily M892_18855 SM00342 helix_turn_helix, arabinose operon control protein M892_18880 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) M892_18880 SM00091 PAS domain M892_18880 SM00387 Histidine kinase-like ATPases M892_18885 SM00382 ATPases associated with a variety of cellular activities M892_18885 SM00448 cheY-homologous receiver domain M892_18980 SM00267 diguanylate cyclase M892_18980 SM01079 M892_18980 M892_18995 SM00267 diguanylate cyclase M892_19030 SM01266 M892_19030 M892_19115 SM00226 Low molecular weight phosphatase family M892_19140 SM00903 Flavin reductase like domain M892_19145 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. M892_19160 SM00450 Rhodanese Homology Domain M892_19170 SM00936 Penicillin-binding protein 5, C-terminal domain M892_19270 SM01192 M892_19270 M892_19270 SM01193 M892_19270 M892_19285 SM00448 cheY-homologous receiver domain M892_19285 SM00862 Transcriptional regulatory protein, C terminal M892_19290 SM00387 Histidine kinase-like ATPases M892_19290 SM00388 His Kinase A (phosphoacceptor) domain M892_19335 SM00382 ATPases associated with a variety of cellular activities M892_19360 SM00450 Rhodanese Homology Domain M892_19445 SM00420 helix_turn_helix, Deoxyribose operon repressor M892_19445 SM01134 M892_19445 M892_19460 SM01060 M892_19460 M892_19465 SM00248 ankyrin repeats M892_19510 SM00062 Bacterial periplasmic substrate-binding proteins M892_19540 SM00382 ATPases associated with a variety of cellular activities M892_19565 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain M892_19580 SM00422 helix_turn_helix, mercury resistance M892_19585 SM00028 Tetratricopeptide repeats M892_19590 SM01022 M892_19590 M892_19655 SM00421 helix_turn_helix, Lux Regulon M892_19660 SM00530 Helix-turn-helix XRE-family like proteins M892_19665 SM00267 diguanylate cyclase M892_19705 SM00886 Stress responsive A/B Barrel Domain M892_19715 SM00421 helix_turn_helix, Lux Regulon M892_19735 SM00870 M892_19735 M892_19740 SM00052 Putative diguanylate phosphodiesterase M892_19750 SM00788 Adenylosuccinate synthetase M892_19790 SM00382 ATPases associated with a variety of cellular activities M892_19875 SM00487 DEAD-like helicases superfamily M892_19875 SM00490 helicase superfamily c-terminal domain M892_19925 SM00342 helix_turn_helix, arabinose operon control protein M892_19925 SM00871 Bacterial transcription activator, effector binding domain M892_19965 SM00822 M892_19965 M892_19975 SM00382 ATPases associated with a variety of cellular activities M892_19990 SM00382 ATPases associated with a variety of cellular activities M892_20080 SM00936 Penicillin-binding protein 5, C-terminal domain M892_20125 SM00357 Cold shock protein domain M892_20165 SM00347 helix_turn_helix multiple antibiotic resistance protein M892_20210 SM00382 ATPases associated with a variety of cellular activities M892_20235 SM00420 helix_turn_helix, Deoxyribose operon repressor M892_20235 SM01134 M892_20235 M892_20295 SM01235 M892_20295 M892_20355 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M892_20375 SM00382 ATPases associated with a variety of cellular activities M892_20390 SM01119 M892_20390 M892_20460 SM00342 helix_turn_helix, arabinose operon control protein M892_20475 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_20530 SM00530 Helix-turn-helix XRE-family like proteins M892_20550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_20550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_20585 SM00052 Putative diguanylate phosphodiesterase M892_20585 SM00267 diguanylate cyclase M892_20590 SM00382 ATPases associated with a variety of cellular activities M892_20595 SM00342 helix_turn_helix, arabinose operon control protein M892_20595 SM00871 Bacterial transcription activator, effector binding domain M892_20680 SM00342 helix_turn_helix, arabinose operon control protein M892_20770 SM00091 PAS domain M892_20770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_20775 SM00861 Transketolase, pyrimidine binding domain M892_20790 SM00636 M892_20790 M892_20795 SM00052 Putative diguanylate phosphodiesterase M892_20795 SM00267 diguanylate cyclase M892_20800 SM00450 Rhodanese Homology Domain M892_20865 SM00852 Probable molybdopterin binding domain M892_20900 SM00448 cheY-homologous receiver domain M892_20915 SM01240 M892_20915 M892_20945 SM00530 Helix-turn-helix XRE-family like proteins M892_21040 SM00382 ATPases associated with a variety of cellular activities M892_21055 SM00028 Tetratricopeptide repeats M892_21125 SM00382 ATPases associated with a variety of cellular activities M892_21135 SM00244 prohibitin homologues M892_21150 SM00448 cheY-homologous receiver domain M892_21155 SM00052 Putative diguanylate phosphodiesterase M892_21155 SM00448 cheY-homologous receiver domain M892_21160 SM00062 Bacterial periplasmic substrate-binding proteins M892_21160 SM00387 Histidine kinase-like ATPases M892_21160 SM00388 His Kinase A (phosphoacceptor) domain M892_21160 SM00448 cheY-homologous receiver domain M892_21235 SM00052 Putative diguanylate phosphodiesterase M892_21235 SM00267 diguanylate cyclase M892_21245 SM00382 ATPases associated with a variety of cellular activities M892_21265 SM00354 helix_turn _helix lactose operon repressor M892_21310 SM00382 ATPases associated with a variety of cellular activities M892_21315 SM00422 helix_turn_helix, mercury resistance M892_21350 SM00851 MGS-like domain M892_21365 SM00073 Histidine Phosphotransfer domain M892_21365 SM00387 Histidine kinase-like ATPases M892_21365 SM00388 His Kinase A (phosphoacceptor) domain M892_21365 SM00448 cheY-homologous receiver domain M892_21385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_21385 SM00387 Histidine kinase-like ATPases M892_21385 SM00388 His Kinase A (phosphoacceptor) domain M892_21390 SM00448 cheY-homologous receiver domain M892_21390 SM00862 Transcriptional regulatory protein, C terminal M892_21430 SM00382 ATPases associated with a variety of cellular activities M892_21450 SM00990 M892_21450 M892_21490 SM00387 Histidine kinase-like ATPases M892_21490 SM00448 cheY-homologous receiver domain M892_21615 SM00382 ATPases associated with a variety of cellular activities M892_21660 SM00028 Tetratricopeptide repeats M892_21750 SM00382 ATPases associated with a variety of cellular activities M892_21810 SM00382 ATPases associated with a variety of cellular activities M892_21970 SM00530 Helix-turn-helix XRE-family like proteins M892_22030 SM00354 helix_turn _helix lactose operon repressor M892_22045 SM00052 Putative diguanylate phosphodiesterase M892_22055 SM00062 Bacterial periplasmic substrate-binding proteins M892_22055 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M892_22065 SM00382 ATPases associated with a variety of cellular activities M892_22080 SM00342 helix_turn_helix, arabinose operon control protein M892_22085 SM00495 Chitin-binding domain type 3 M892_22085 SM00636 M892_22085 M892_22125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_22140 SM00487 DEAD-like helicases superfamily M892_22140 SM00490 helicase superfamily c-terminal domain M892_22185 SM00867 YceI-like domain M892_22190 SM00116 Domain in cystathionine beta-synthase and other proteins. M892_22270 SM00495 Chitin-binding domain type 3 M892_22270 SM00636 M892_22270 M892_22285 SM00421 helix_turn_helix, Lux Regulon M892_22285 SM00448 cheY-homologous receiver domain M892_22300 SM00260 Two component signalling adaptor domain M892_22300 SM00448 cheY-homologous receiver domain M892_22355 SM00382 ATPases associated with a variety of cellular activities M892_22360 SM00382 ATPases associated with a variety of cellular activities M892_22360 SM01086 C-terminal, D2-small domain, of ClpB protein M892_22395 SM00220 Serine/Threonine protein kinases, catalytic domain M892_22430 SM00344 helix_turn_helix ASNC type M892_22450 SM00240 Forkhead associated domain M892_22495 SM00267 diguanylate cyclase M892_22495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_22605 SM00782 PhnA Zinc-Ribbon M892_22670 SM00271 DnaJ molecular chaperone homology domain M892_22680 SM00052 Putative diguanylate phosphodiesterase M892_22680 SM00267 diguanylate cyclase M892_22695 SM00382 ATPases associated with a variety of cellular activities M892_22710 SM00797 Allophanate hydrolase subunit 2 M892_22715 SM00796 Allophanate hydrolase subunit 1 M892_22725 SM00091 PAS domain M892_22725 SM00267 diguanylate cyclase M892_22725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_22750 SM00881 CoA binding domain M892_22965 SM00448 cheY-homologous receiver domain M892_22965 SM00862 Transcriptional regulatory protein, C terminal M892_22970 SM00387 Histidine kinase-like ATPases M892_22970 SM00388 His Kinase A (phosphoacceptor) domain M892_22980 SM01002 Alanine dehydrogenase/PNT, C-terminal domain M892_22980 SM01003 Alanine dehydrogenase/PNT, N-terminal domain M892_22995 SM00267 diguanylate cyclase M892_23000 SM00267 diguanylate cyclase M892_23000 SM00448 cheY-homologous receiver domain M892_23010 SM00382 ATPases associated with a variety of cellular activities M892_23105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_23110 SM00450 Rhodanese Homology Domain M892_23185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_23185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_23185 SM01049 M892_23185 M892_23240 SM00642 Alpha-amylase domain M892_23285 SM00382 ATPases associated with a variety of cellular activities M892_23355 SM00495 Chitin-binding domain type 3 M892_23355 SM00636 M892_23355 M892_23375 SM00448 cheY-homologous receiver domain M892_23400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_23400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_23445 SM00953 M892_23445 M892_23540 SM00487 DEAD-like helicases superfamily M892_23565 SM00867 YceI-like domain M892_23570 SM00636 M892_23570 M892_23605 SM00331 Sigma factor PP2C-like phosphatases M892_23605 SM00448 cheY-homologous receiver domain M892_23640 SM00382 ATPases associated with a variety of cellular activities M892_23655 SM01012 M892_23655 M892_23675 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M892_23695 SM00028 Tetratricopeptide repeats M892_23695 SM00267 diguanylate cyclase M892_23715 SM00871 Bacterial transcription activator, effector binding domain M892_23725 SM00388 His Kinase A (phosphoacceptor) domain M892_23730 SM00448 cheY-homologous receiver domain M892_23730 SM00862 Transcriptional regulatory protein, C terminal M892_23800 SM00861 Transketolase, pyrimidine binding domain M892_23815 SM00893 Electron transfer flavoprotein domain M892_23820 SM00893 Electron transfer flavoprotein domain M892_23830 SM00052 Putative diguanylate phosphodiesterase M892_23855 SM00900 M892_23855 M892_23885 SM00062 Bacterial periplasmic substrate-binding proteins M892_23885 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. M892_23890 SM00382 ATPases associated with a variety of cellular activities M892_23945 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins M892_24035 SM00822 M892_24035 M892_24070 SM00422 helix_turn_helix, mercury resistance M892_24185 SM00052 Putative diguanylate phosphodiesterase M892_24200 SM00487 DEAD-like helicases superfamily M892_24200 SM00490 helicase superfamily c-terminal domain M892_24205 SM00267 diguanylate cyclase M892_24215 SM00833 Cobalamin synthesis protein cobW C-terminal domain M892_24350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_24350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_24360 SM00382 ATPases associated with a variety of cellular activities M892_24380 SM00062 Bacterial periplasmic substrate-binding proteins M892_24380 SM00267 diguanylate cyclase M892_24395 SM00357 Cold shock protein domain M892_24400 SM01322 M892_24400 M892_24440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_24440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_24440 SM01358 M892_24440 M892_24465 SM00421 helix_turn_helix, Lux Regulon M892_24465 SM00448 cheY-homologous receiver domain M892_24470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_24470 SM00387 Histidine kinase-like ATPases M892_24490 SM00926 Molybdopterin oxidoreductase Fe4S4 domain M892_24540 SM00822 M892_24540 M892_24585 SM00344 helix_turn_helix ASNC type M892_24605 SM00387 Histidine kinase-like ATPases M892_24605 SM00388 His Kinase A (phosphoacceptor) domain M892_24605 SM00448 cheY-homologous receiver domain M892_24615 SM00465 GIY-YIG type nucleases (URI domain) M892_24650 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M892_24675 SM00344 helix_turn_helix ASNC type M892_24685 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_24695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_24695 SM00387 Histidine kinase-like ATPases M892_24695 SM00388 His Kinase A (phosphoacceptor) domain M892_24700 SM00448 cheY-homologous receiver domain M892_24700 SM00862 Transcriptional regulatory protein, C terminal M892_24720 SM00342 helix_turn_helix, arabinose operon control protein M892_24740 SM00924 MgtE intracellular N domain M892_24765 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. M892_24770 SM00530 Helix-turn-helix XRE-family like proteins M892_24780 SM00563 Phosphate acyltransferases M892_24825 SM01065 Starch binding domain M892_24840 SM00764 Citrate lyase ligase C-terminal domain M892_24875 SM00448 cheY-homologous receiver domain M892_24875 SM00862 Transcriptional regulatory protein, C terminal M892_24880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_24880 SM00387 Histidine kinase-like ATPases M892_24880 SM00388 His Kinase A (phosphoacceptor) domain M892_24905 SM00342 helix_turn_helix, arabinose operon control protein M892_24975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_25020 SM00342 helix_turn_helix, arabinose operon control protein M892_25025 SM00822 M892_25025 M892_25040 SM00829 Enoylreductase M892_25045 SM00642 Alpha-amylase domain M892_25055 SM00260 Two component signalling adaptor domain M892_25055 SM00448 cheY-homologous receiver domain M892_25080 SM00729 Elongator protein 3, MiaB family, Radical SAM M892_25110 SM00382 ATPases associated with a variety of cellular activities M892_25185 SM00342 helix_turn_helix, arabinose operon control protein M892_25235 SM00382 ATPases associated with a variety of cellular activities M892_25315 SM01022 M892_25315 M892_25325 SM00829 Enoylreductase M892_25335 SM01060 M892_25335 M892_25365 SM00342 helix_turn_helix, arabinose operon control protein M892_25425 SM00495 Chitin-binding domain type 3 M892_25435 SM00052 Putative diguanylate phosphodiesterase M892_25440 SM00052 Putative diguanylate phosphodiesterase M892_25475 SM00387 Histidine kinase-like ATPases M892_25475 SM00388 His Kinase A (phosphoacceptor) domain M892_25480 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_25480 SM00448 cheY-homologous receiver domain M892_25490 SM00382 ATPases associated with a variety of cellular activities M892_25500 SM00421 helix_turn_helix, Lux Regulon M892_25505 SM00421 helix_turn_helix, Lux Regulon M892_25515 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_25515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_25520 SM00419 helix_turn_helix, cAMP Regulatory protein M892_25540 SM00327 von Willebrand factor (vWF) type A domain M892_25545 SM00028 Tetratricopeptide repeats M892_25545 SM00327 von Willebrand factor (vWF) type A domain M892_25555 SM00267 diguanylate cyclase M892_25560 SM00382 ATPases associated with a variety of cellular activities M892_25580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_25580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_25625 SM00487 DEAD-like helicases superfamily M892_25625 SM00490 helicase superfamily c-terminal domain M892_25635 SM00257 Lysin motif M892_25645 SM00422 helix_turn_helix, mercury resistance M892_25665 SM00028 Tetratricopeptide repeats M892_25670 SM00267 diguanylate cyclase M892_25700 SM00382 ATPases associated with a variety of cellular activities M892_25720 SM00226 Low molecular weight phosphatase family M892_25720 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_25730 SM00587 ZnF_C4 abd HLH domain containing kinases domain M892_25750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_25750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_25765 SM00382 ATPases associated with a variety of cellular activities M892_25810 SM01057 Eukaryotic-type carbonic anhydrase M892_25840 SM00267 diguanylate cyclase M892_26180 SM00829 Enoylreductase M892_26190 SM00052 Putative diguanylate phosphodiesterase M892_26190 SM00267 diguanylate cyclase M892_26195 SM00062 Bacterial periplasmic substrate-binding proteins M892_26210 SM00388 His Kinase A (phosphoacceptor) domain M892_26215 SM00448 cheY-homologous receiver domain M892_26215 SM00862 Transcriptional regulatory protein, C terminal M892_26265 SM00481 DNA polymerase alpha chain like domain M892_26285 SM00020 Trypsin-like serine protease M892_26290 SM00052 Putative diguanylate phosphodiesterase M892_26300 SM00382 ATPases associated with a variety of cellular activities M892_26325 SM00382 ATPases associated with a variety of cellular activities M892_26525 SM00344 helix_turn_helix ASNC type M892_26615 SM00858 M892_26615 M892_26695 SM00631 M892_26695 M892_26730 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_26730 SM00866 M892_26730 M892_26740 SM00382 ATPases associated with a variety of cellular activities M892_26830 SM00342 helix_turn_helix, arabinose operon control protein M892_26835 SM00642 Alpha-amylase domain M892_26855 SM00642 Alpha-amylase domain M892_26870 SM00421 helix_turn_helix, Lux Regulon M892_26925 SM00966 SpoVT / AbrB like domain M892_26945 SM00671 Sel1-like repeats. M892_26950 SM00642 Alpha-amylase domain M892_26965 SM00642 Alpha-amylase domain M892_26985 SM00642 Alpha-amylase domain M892_27010 SM00354 helix_turn _helix lactose operon repressor M892_27015 SM00857 Resolvase, N terminal domain M892_27090 SM00530 Helix-turn-helix XRE-family like proteins M892_27110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_27110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_27160 SM00382 ATPases associated with a variety of cellular activities M892_27205 SM00347 helix_turn_helix multiple antibiotic resistance protein M892_27240 SM01007 Class II Aldolase and Adducin N-terminal domain M892_27255 SM00420 helix_turn_helix, Deoxyribose operon repressor M892_27255 SM01134 M892_27255 M892_27265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_27275 SM00342 helix_turn_helix, arabinose operon control protein M892_27285 SM00344 helix_turn_helix ASNC type M892_27435 SM00634 Bacterial Ig-like domain (group 1) M892_27440 SM00634 Bacterial Ig-like domain (group 1) M892_27450 SM00382 ATPases associated with a variety of cellular activities M892_27465 SM00344 helix_turn_helix ASNC type M892_27495 SM00360 RNA recognition motif M892_27520 SM00342 helix_turn_helix, arabinose operon control protein M892_27530 SM00421 helix_turn_helix, Lux Regulon M892_27540 SM00387 Histidine kinase-like ATPases M892_27545 SM00448 cheY-homologous receiver domain M892_27560 SM00052 Putative diguanylate phosphodiesterase M892_27560 SM00267 diguanylate cyclase M892_27705 SM00470 ParB-like nuclease domain M892_27730 SM00382 ATPases associated with a variety of cellular activities M892_27755 SM00387 Histidine kinase-like ATPases M892_27755 SM00388 His Kinase A (phosphoacceptor) domain M892_27755 SM00448 cheY-homologous receiver domain M892_27795 SM00382 ATPases associated with a variety of cellular activities M892_27815 SM00387 Histidine kinase-like ATPases M892_27820 SM00448 cheY-homologous receiver domain M892_27820 SM00850 LytTr DNA-binding domain M892_27830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). M892_27830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain M892_27830 SM01049 M892_27830 M892_27890 SM00382 ATPases associated with a variety of cellular activities M892_27895 SM00345 helix_turn_helix gluconate operon transcriptional repressor M892_28420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor M892_28435 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain M892_28435 SM00437 Bacterial DNA topoisomerase I DNA-binding domain M892_28435 SM00493 M892_28435 M892_28530 SM00530 Helix-turn-helix XRE-family like proteins M892_28630 SM00857 Resolvase, N terminal domain