C1N50_00005	SM00382	ATPases associated with a variety of cellular activities
C1N50_00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
C1N50_00010	SM00480	DNA polymerase III beta subunit
C1N50_00020	SM00387	Histidine kinase-like ATPases
C1N50_00020	SM00433	TopoisomeraseII
C1N50_00070	SM00829	Enoylreductase
C1N50_00180	SM00876	Biotin and Thiamin Synthesis associated domain
C1N50_00245	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_00265	SM00341	Helicase and RNase D C-terminal
C1N50_00265	SM00487	DEAD-like helicases superfamily
C1N50_00265	SM00490	helicase superfamily c-terminal domain
C1N50_00265	SM00956	C1N50_00265
C1N50_00290	SM00487	DEAD-like helicases superfamily
C1N50_00290	SM00490	helicase superfamily c-terminal domain
C1N50_00300	SM00357	Cold shock protein domain
C1N50_00300	SM00382	ATPases associated with a variety of cellular activities
C1N50_00300	SM00959	Rho termination factor, N-terminal domain
C1N50_00385	SM01219	C1N50_00385
C1N50_00420	SM00052	Putative diguanylate phosphodiesterase
C1N50_00420	SM00267	diguanylate cyclase
C1N50_00420	SM00897	FIST N domain
C1N50_00420	SM01204	C1N50_00420
C1N50_00425	SM01144	C1N50_00425
C1N50_00460	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C1N50_00465	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C1N50_00535	SM00382	ATPases associated with a variety of cellular activities
C1N50_00535	SM00962	SRP54-type protein, GTPase domain
C1N50_00535	SM00963	SRP54-type protein, helical bundle domain
C1N50_00540	SM00382	ATPases associated with a variety of cellular activities
C1N50_00560	SM00450	Rhodanese Homology Domain
C1N50_00585	SM00563	Phosphate acyltransferases
C1N50_00595	SM00382	ATPases associated with a variety of cellular activities
C1N50_00620	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_00690	SM00360	RNA recognition motif
C1N50_00760	SM00155	Phospholipase D. Active site motifs.
C1N50_00825	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
C1N50_00825	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
C1N50_00830	SM00649	Ribosomal protein L11/L12
C1N50_00855	SM00663	RNA polymerase I subunit A N-terminus
C1N50_00890	SM00986	Uracil DNA glycosylase superfamily
C1N50_00890	SM00987	UreE urease accessory protein, C-terminal domain 
C1N50_00910	SM00411	bacterial (prokaryotic) histone like domain
C1N50_00920	SM01209	C1N50_00920
C1N50_00920	SM01210	C1N50_00920
C1N50_00925	SM00798	AICARFT/IMPCHase bienzyme
C1N50_00925	SM00851	MGS-like domain
C1N50_00930	SM00422	helix_turn_helix, mercury resistance
C1N50_00935	SM00862	Transcriptional regulatory protein, C terminal
C1N50_00995	SM00267	diguanylate cyclase
C1N50_01020	SM00878	Biotin carboxylase C-terminal domain
C1N50_01040	SM00479	C1N50_01040
C1N50_01055	SM00387	Histidine kinase-like ATPases
C1N50_01055	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_01055	SM00448	cheY-homologous receiver domain
C1N50_01090	SM00421	helix_turn_helix, Lux Regulon
C1N50_01090	SM00448	cheY-homologous receiver domain
C1N50_01125	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_01125	SM00387	Histidine kinase-like ATPases
C1N50_01125	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_01130	SM00448	cheY-homologous receiver domain
C1N50_01130	SM00862	Transcriptional regulatory protein, C terminal
C1N50_01155	SM00883	Chaperonin 10 Kd subunit
C1N50_01180	SM00841	Elongation factor P, C-terminal
C1N50_01180	SM01185	C1N50_01180
C1N50_01240	SM00971	Serine acetyltransferase, N-terminal
C1N50_01255	SM00450	Rhodanese Homology Domain
C1N50_01270	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_01270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_01290	SM00479	C1N50_01290
C1N50_01375	SM00257	Lysin motif
C1N50_01375	SM00646	C1N50_01375
C1N50_01380	SM00853	MutL C terminal dimerisation domain
C1N50_01380	SM01340	C1N50_01380
C1N50_01400	SM00244	prohibitin homologues
C1N50_01405	SM00244	prohibitin homologues
C1N50_01415	SM00788	Adenylosuccinate synthetase
C1N50_01425	SM00671	Sel1-like repeats.
C1N50_01440	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_01440	SM00357	Cold shock protein domain
C1N50_01440	SM00955	C1N50_01440
C1N50_01445	SM00967	RNA 2'-O ribose methyltransferase substrate binding
C1N50_01490	SM01150	C1N50_01490
C1N50_01495	SM00100	Cyclic nucleotide-monophosphate binding domain
C1N50_01495	SM00419	helix_turn_helix, cAMP Regulatory protein
C1N50_01520	SM00382	ATPases associated with a variety of cellular activities
C1N50_01565	SM00320	WD40 repeats
C1N50_01605	SM00838	Elongation factor G C-terminus
C1N50_01605	SM00889	Elongation factor G, domain IV
C1N50_01625	SM00919	Malic enzyme, NAD binding domain
C1N50_01625	SM01274	C1N50_01625
C1N50_01665	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C1N50_01715	SM00842	Cell division protein FtsA
C1N50_01735	SM00965	Secretin and TonB N terminus short domain
C1N50_01795	SM01005	Alanine racemase, C-terminal domain
C1N50_01920	SM01018	B12 binding domain
C1N50_01955	SM00421	helix_turn_helix, Lux Regulon
C1N50_01965	SM00052	Putative diguanylate phosphodiesterase
C1N50_01965	SM00267	diguanylate cyclase
C1N50_01985	SM00965	Secretin and TonB N terminus short domain
C1N50_01995	SM00028	Tetratricopeptide repeats
C1N50_02000	SM00382	ATPases associated with a variety of cellular activities
C1N50_02070	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_02090	SM00670	Large family of predicted nucleotide-binding domains
C1N50_02095	SM00487	DEAD-like helicases superfamily
C1N50_02095	SM00490	helicase superfamily c-terminal domain
C1N50_02125	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_02125	SM00924	MgtE intracellular N domain
C1N50_02155	SM00382	ATPases associated with a variety of cellular activities
C1N50_02170	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_02180	SM00382	ATPases associated with a variety of cellular activities
C1N50_02215	SM00563	Phosphate acyltransferases
C1N50_02260	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_02300	SM00822	C1N50_02300
C1N50_02340	SM00495	Chitin-binding domain type 3
C1N50_02370	SM00354	helix_turn _helix lactose operon repressor
C1N50_02375	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_02460	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_02460	SM01049	C1N50_02460
C1N50_02510	SM00478	endonuclease III
C1N50_02510	SM00525	C1N50_02510
C1N50_02530	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_02545	SM01152	C1N50_02545
C1N50_02565	SM00382	ATPases associated with a variety of cellular activities
C1N50_02575	SM00732	Likely ribonuclease with RNase H fold.
C1N50_02600	SM00731	SprT homologues.
C1N50_02615	SM00861	Transketolase, pyrimidine binding domain
C1N50_02625	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C1N50_02760	SM00838	Elongation factor G C-terminus
C1N50_02770	SM00358	Double-stranded RNA binding motif
C1N50_02770	SM00535	Ribonuclease III family
C1N50_02795	SM00073	Histidine Phosphotransfer domain
C1N50_02795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_02795	SM00387	Histidine kinase-like ATPases
C1N50_02795	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_02795	SM00448	cheY-homologous receiver domain
C1N50_02810	SM00954	Region found in RelA / SpoT proteins
C1N50_02825	SM01192	C1N50_02825
C1N50_02825	SM01193	C1N50_02825
C1N50_02860	SM00257	Lysin motif
C1N50_02870	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
C1N50_02870	SM00534	ATPase domain of DNA mismatch repair MUTS family
C1N50_02880	SM00382	ATPases associated with a variety of cellular activities
C1N50_02890	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C1N50_02975	SM00421	helix_turn_helix, Lux Regulon
C1N50_02995	SM00829	Enoylreductase
C1N50_03025	SM01091	Transporter associated domain
C1N50_03035	SM00382	ATPases associated with a variety of cellular activities
C1N50_03035	SM00962	SRP54-type protein, GTPase domain
C1N50_03035	SM00963	SRP54-type protein, helical bundle domain
C1N50_03105	SM00644	C1N50_03105
C1N50_03110	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_03110	SM00895	C1N50_03110
C1N50_03145	SM00947	Carbonic anhydrase
C1N50_03155	SM00382	ATPases associated with a variety of cellular activities
C1N50_03210	SM00487	DEAD-like helicases superfamily
C1N50_03210	SM00490	helicase superfamily c-terminal domain
C1N50_03210	SM00847	Helicase associated domain (HA2)  Add an annotation
C1N50_03240	SM00938	Nitrogen regulatory protein P-II
C1N50_03260	SM00382	ATPases associated with a variety of cellular activities
C1N50_03270	SM01068	Putative carbohydrate binding domain
C1N50_03290	SM00382	ATPases associated with a variety of cellular activities
C1N50_03295	SM00382	ATPases associated with a variety of cellular activities
C1N50_03315	SM00091	PAS domain
C1N50_03315	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_03315	SM00387	Histidine kinase-like ATPases
C1N50_03315	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_03315	SM00448	cheY-homologous receiver domain
C1N50_03360	SM00363	S4 RNA-binding domain
C1N50_03385	SM01103	C1N50_03385
C1N50_03395	SM00382	ATPases associated with a variety of cellular activities
C1N50_03430	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_03450	SM01387	C1N50_03450
C1N50_03455	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_03455	SM00322	K homology RNA-binding domain
C1N50_03460	SM00028	Tetratricopeptide repeats
C1N50_03465	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_03485	SM00052	Putative diguanylate phosphodiesterase
C1N50_03485	SM00091	PAS domain
C1N50_03485	SM00267	diguanylate cyclase
C1N50_03530	SM01133	C1N50_03530
C1N50_03535	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
C1N50_03565	SM00382	ATPases associated with a variety of cellular activities
C1N50_03570	SM00838	Elongation factor G C-terminus
C1N50_03570	SM00889	Elongation factor G, domain IV
C1N50_03595	SM00421	helix_turn_helix, Lux Regulon
C1N50_03660	SM00028	Tetratricopeptide repeats
C1N50_03705	SM01038	Beta galactosidase small chain
C1N50_03710	SM00354	helix_turn _helix lactose operon repressor
C1N50_03750	SM00354	helix_turn _helix lactose operon repressor
C1N50_03805	SM00420	helix_turn_helix, Deoxyribose operon repressor
C1N50_03805	SM01134	C1N50_03805
C1N50_03905	SM00925	MltA specific insert domain
C1N50_03945	SM00464	Found in ATP-dependent protease La (LON)
C1N50_04000	SM00900	C1N50_04000
C1N50_04030	SM00267	diguanylate cyclase
C1N50_04030	SM00448	cheY-homologous receiver domain
C1N50_04040	SM00487	DEAD-like helicases superfamily
C1N50_04040	SM00490	helicase superfamily c-terminal domain
C1N50_04055	SM00495	Chitin-binding domain type 3
C1N50_04055	SM00636	C1N50_04055
C1N50_04145	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_04190	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C1N50_04200	SM00935	Outer membrane protein (OmpH-like)
C1N50_04230	SM00481	DNA polymerase alpha chain like domain
C1N50_04240	SM00977	TilS substrate C-terminal domain
C1N50_04250	SM00938	Nitrogen regulatory protein P-II
C1N50_04265	SM00257	Lysin motif
C1N50_04270	SM00849	Metallo-beta-lactamase superfamily
C1N50_04285	SM00479	C1N50_04285
C1N50_04360	SM00028	Tetratricopeptide repeats
C1N50_04385	SM01130	C1N50_04385
C1N50_04480	SM00382	ATPases associated with a variety of cellular activities
C1N50_04485	SM00387	Histidine kinase-like ATPases
C1N50_04485	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_04490	SM00382	ATPases associated with a variety of cellular activities
C1N50_04490	SM00448	cheY-homologous receiver domain
C1N50_04515	SM00382	ATPases associated with a variety of cellular activities
C1N50_04580	SM00382	ATPases associated with a variety of cellular activities
C1N50_04580	SM00962	SRP54-type protein, GTPase domain
C1N50_04595	SM00448	cheY-homologous receiver domain
C1N50_04605	SM00073	Histidine Phosphotransfer domain
C1N50_04605	SM00260	Two component signalling adaptor domain
C1N50_04605	SM00387	Histidine kinase-like ATPases
C1N50_04605	SM01231	C1N50_04605
C1N50_04610	SM00448	cheY-homologous receiver domain
C1N50_04620	SM00260	Two component signalling adaptor domain
C1N50_04625	SM00260	Two component signalling adaptor domain
C1N50_04635	SM00382	ATPases associated with a variety of cellular activities
C1N50_04725	SM00855	Phosphoglycerate mutase family
C1N50_04730	SM00463	Small MutS-related domain
C1N50_04775	SM00825	Beta-ketoacyl synthase
C1N50_04790	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C1N50_04840	SM00448	cheY-homologous receiver domain
C1N50_04860	SM00382	ATPases associated with a variety of cellular activities
C1N50_04870	SM00493	C1N50_04870
C1N50_04945	SM00098	Alkaline phosphatase homologues
C1N50_04985	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C1N50_05005	SM00870	C1N50_05005
C1N50_05025	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
C1N50_05025	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
C1N50_05025	SM00493	C1N50_05025
C1N50_05095	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C1N50_05140	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_05155	SM00479	C1N50_05155
C1N50_05175	SM00478	endonuclease III
C1N50_05175	SM00525	C1N50_05175
C1N50_05185	SM00900	C1N50_05185
C1N50_05220	SM00862	Transcriptional regulatory protein, C terminal
C1N50_05260	SM00487	DEAD-like helicases superfamily
C1N50_05260	SM00490	helicase superfamily c-terminal domain
C1N50_05265	SM00382	ATPases associated with a variety of cellular activities
C1N50_05265	SM00448	cheY-homologous receiver domain
C1N50_05280	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_05285	SM00852	Probable molybdopterin binding domain
C1N50_05320	SM00382	ATPases associated with a variety of cellular activities
C1N50_05325	SM00382	ATPases associated with a variety of cellular activities
C1N50_05365	SM00382	ATPases associated with a variety of cellular activities
C1N50_05370	SM00642	Alpha-amylase domain
C1N50_05375	SM00267	diguanylate cyclase
C1N50_05400	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_05435	SM00226	Low molecular weight phosphatase family
C1N50_05450	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_05455	SM00363	S4 RNA-binding domain
C1N50_05485	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
C1N50_05490	SM00822	C1N50_05490
C1N50_05500	SM00825	Beta-ketoacyl synthase
C1N50_05595	SM00862	Transcriptional regulatory protein, C terminal
C1N50_05615	SM00260	Two component signalling adaptor domain
C1N50_05615	SM00448	cheY-homologous receiver domain
C1N50_05620	SM00481	DNA polymerase alpha chain like domain
C1N50_05635	SM00822	C1N50_05635
C1N50_05650	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_05655	SM00411	bacterial (prokaryotic) histone like domain
C1N50_05665	SM00028	Tetratricopeptide repeats
C1N50_05670	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
C1N50_05705	SM00354	helix_turn _helix lactose operon repressor
C1N50_05710	SM01038	Beta galactosidase small chain
C1N50_05735	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_05735	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_05810	SM00382	ATPases associated with a variety of cellular activities
C1N50_05825	SM00479	C1N50_05825
C1N50_05890	SM00220	Serine/Threonine protein kinases, catalytic domain
C1N50_05890	SM00364	Leucine-rich repeats, bacterial type
C1N50_05890	SM00369	Leucine-rich repeats, typical (most populated) subfamily
C1N50_05895	SM00387	Histidine kinase-like ATPases
C1N50_05895	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_05900	SM00448	cheY-homologous receiver domain
C1N50_05900	SM00862	Transcriptional regulatory protein, C terminal
C1N50_05920	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_05920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_05980	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_05985	SM00052	Putative diguanylate phosphodiesterase
C1N50_05985	SM00091	PAS domain
C1N50_06035	SM00387	Histidine kinase-like ATPases
C1N50_06035	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_06035	SM00448	cheY-homologous receiver domain
C1N50_06085	SM00481	DNA polymerase alpha chain like domain
C1N50_06100	SM00363	S4 RNA-binding domain
C1N50_06110	SM00841	Elongation factor P, C-terminal
C1N50_06110	SM01185	C1N50_06110
C1N50_06120	SM00486	DNA polymerase type-B family
C1N50_06125	SM00421	helix_turn_helix, Lux Regulon
C1N50_06125	SM00448	cheY-homologous receiver domain
C1N50_06130	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C1N50_06130	SM00465	GIY-YIG type nucleases (URI domain)
C1N50_06185	SM00852	Probable molybdopterin binding domain
C1N50_06210	SM00434	DNA Topoisomerase IV
C1N50_06300	SM00849	Metallo-beta-lactamase superfamily
C1N50_06330	SM00387	Histidine kinase-like ATPases
C1N50_06330	SM01049	C1N50_06330
C1N50_06335	SM00421	helix_turn_helix, Lux Regulon
C1N50_06335	SM00448	cheY-homologous receiver domain
C1N50_06340	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_06350	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_06350	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_06355	SM00479	C1N50_06355
C1N50_06360	SM00100	Cyclic nucleotide-monophosphate binding domain
C1N50_06360	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_06390	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_06410	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_06410	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_06420	SM00421	helix_turn_helix, Lux Regulon
C1N50_06430	SM00052	Putative diguanylate phosphodiesterase
C1N50_06455	SM00387	Histidine kinase-like ATPases
C1N50_06455	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_06455	SM00448	cheY-homologous receiver domain
C1N50_06485	SM00091	PAS domain
C1N50_06485	SM00382	ATPases associated with a variety of cellular activities
C1N50_06715	SM00028	Tetratricopeptide repeats
C1N50_06860	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_06860	SM00974	C1N50_06860
C1N50_06885	SM01022	C1N50_06885
C1N50_07220	SM00507	HNH nucleases
C1N50_07235	SM00849	Metallo-beta-lactamase superfamily
C1N50_07345	SM00028	Tetratricopeptide repeats
C1N50_07380	SM00100	Cyclic nucleotide-monophosphate binding domain
C1N50_07380	SM00387	Histidine kinase-like ATPases
C1N50_07385	SM00448	cheY-homologous receiver domain
C1N50_07390	SM00052	Putative diguanylate phosphodiesterase
C1N50_07390	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C1N50_07390	SM00267	diguanylate cyclase
C1N50_07395	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_07425	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
C1N50_07430	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_07465	SM00382	ATPases associated with a variety of cellular activities
C1N50_07470	SM00382	ATPases associated with a variety of cellular activities
C1N50_07520	SM00267	diguanylate cyclase
C1N50_07520	SM01079	C1N50_07520
C1N50_07525	SM00479	C1N50_07525
C1N50_07545	SM00458	Ricin-type beta-trefoil
C1N50_07570	SM00382	ATPases associated with a variety of cellular activities
C1N50_07580	SM00354	helix_turn _helix lactose operon repressor
C1N50_07605	SM01217	C1N50_07605
C1N50_07610	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C1N50_07640	SM00382	ATPases associated with a variety of cellular activities
C1N50_07640	SM00487	DEAD-like helicases superfamily
C1N50_07640	SM00490	helicase superfamily c-terminal domain
C1N50_07640	SM00847	Helicase associated domain (HA2)  Add an annotation
C1N50_07660	SM00245	tail specific protease
C1N50_07665	SM00028	Tetratricopeptide repeats
C1N50_07725	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_07750	SM00999	Aerolysin toxin
C1N50_07760	SM00999	Aerolysin toxin
C1N50_07770	SM00862	Transcriptional regulatory protein, C terminal
C1N50_07825	SM00100	Cyclic nucleotide-monophosphate binding domain
C1N50_07825	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_07830	SM00479	C1N50_07830
C1N50_07930	SM00507	HNH nucleases
C1N50_07985	SM00091	PAS domain
C1N50_07985	SM00387	Histidine kinase-like ATPases
C1N50_07990	SM00448	cheY-homologous receiver domain
C1N50_08005	SM01350	C1N50_08005
C1N50_08035	SM00382	ATPases associated with a variety of cellular activities
C1N50_08050	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_08050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_08085	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_08085	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_08090	SM00220	Serine/Threonine protein kinases, catalytic domain
C1N50_08125	SM00382	ATPases associated with a variety of cellular activities
C1N50_08125	SM01086	C-terminal, D2-small domain, of ClpB protein
C1N50_08190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_08190	SM00895	C1N50_08190
C1N50_08260	SM00028	Tetratricopeptide repeats
C1N50_08260	SM00267	diguanylate cyclase
C1N50_08280	SM00237	Domains in Na-Ca exchangers and integrin-beta4
C1N50_08295	SM00327	von Willebrand factor (vWF) type A domain
C1N50_08300	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
C1N50_08310	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_08335	SM00382	ATPases associated with a variety of cellular activities
C1N50_08350	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_08405	SM00382	ATPases associated with a variety of cellular activities
C1N50_08415	SM00945	ProQ/FINO family
C1N50_08420	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C1N50_08420	SM00245	tail specific protease
C1N50_08455	SM00981	C1N50_08455
C1N50_08465	SM00382	ATPases associated with a variety of cellular activities
C1N50_08525	SM00910	C1N50_08525
C1N50_08585	SM00479	C1N50_08585
C1N50_08595	SM00387	Histidine kinase-like ATPases
C1N50_08595	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_08595	SM00448	cheY-homologous receiver domain
C1N50_08600	SM00897	FIST N domain
C1N50_08600	SM01204	C1N50_08600
C1N50_08650	SM00100	Cyclic nucleotide-monophosphate binding domain
C1N50_08650	SM00419	helix_turn_helix, cAMP Regulatory protein
C1N50_08680	SM00382	ATPases associated with a variety of cellular activities
C1N50_08725	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C1N50_08760	SM00382	ATPases associated with a variety of cellular activities
C1N50_08780	SM00387	Histidine kinase-like ATPases
C1N50_08780	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_08785	SM00382	ATPases associated with a variety of cellular activities
C1N50_08785	SM00448	cheY-homologous receiver domain
C1N50_08800	SM00382	ATPases associated with a variety of cellular activities
C1N50_08810	SM00852	Probable molybdopterin binding domain
C1N50_08825	SM01144	C1N50_08825
C1N50_08875	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_08890	SM00267	diguanylate cyclase
C1N50_08895	SM00448	cheY-homologous receiver domain
C1N50_08955	SM00382	ATPases associated with a variety of cellular activities
C1N50_08955	SM00448	cheY-homologous receiver domain
C1N50_09015	SM01276	C1N50_09015
C1N50_09040	SM00267	diguanylate cyclase
C1N50_09045	SM00387	Histidine kinase-like ATPases
C1N50_09045	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_09045	SM00448	cheY-homologous receiver domain
C1N50_09065	SM01266	C1N50_09065
C1N50_09070	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C1N50_09070	SM00091	PAS domain
C1N50_09070	SM00387	Histidine kinase-like ATPases
C1N50_09070	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_09070	SM00448	cheY-homologous receiver domain
C1N50_09090	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_09125	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
C1N50_09125	SM00495	Chitin-binding domain type 3
C1N50_09135	SM00495	Chitin-binding domain type 3
C1N50_09255	SM00267	diguanylate cyclase
C1N50_09320	SM00382	ATPases associated with a variety of cellular activities
C1N50_09340	SM00855	Phosphoglycerate mutase family
C1N50_09360	SM00903	Flavin reductase like domain
C1N50_09385	SM00479	C1N50_09385
C1N50_09425	SM00411	bacterial (prokaryotic) histone like domain
C1N50_09490	SM00382	ATPases associated with a variety of cellular activities
C1N50_09495	SM00382	ATPases associated with a variety of cellular activities
C1N50_09505	SM00873	B3/4 domain
C1N50_09505	SM00874	tRNA synthetase B5 domain
C1N50_09505	SM00896	Ferredoxin-fold anticodon binding domain
C1N50_09515	SM00267	diguanylate cyclase
C1N50_09540	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_09590	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C1N50_09600	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_09600	SM00866	C1N50_09600
C1N50_09685	SM00671	Sel1-like repeats.
C1N50_09810	SM00487	DEAD-like helicases superfamily
C1N50_09810	SM00490	helicase superfamily c-terminal domain
C1N50_09815	SM00919	Malic enzyme, NAD binding domain
C1N50_09815	SM01274	C1N50_09815
C1N50_09830	SM00267	diguanylate cyclase
C1N50_09855	SM00382	ATPases associated with a variety of cellular activities
C1N50_09860	SM00382	ATPases associated with a variety of cellular activities
C1N50_09875	SM00052	Putative diguanylate phosphodiesterase
C1N50_09895	SM00267	diguanylate cyclase
C1N50_09920	SM00387	Histidine kinase-like ATPases
C1N50_09925	SM00448	cheY-homologous receiver domain
C1N50_10015	SM00382	ATPases associated with a variety of cellular activities
C1N50_10045	SM00363	S4 RNA-binding domain
C1N50_10050	SM00487	DEAD-like helicases superfamily
C1N50_10050	SM00490	helicase superfamily c-terminal domain
C1N50_10060	SM00448	cheY-homologous receiver domain
C1N50_10060	SM00862	Transcriptional regulatory protein, C terminal
C1N50_10065	SM00387	Histidine kinase-like ATPases
C1N50_10135	SM00421	helix_turn_helix, Lux Regulon
C1N50_10135	SM00448	cheY-homologous receiver domain
C1N50_10140	SM00387	Histidine kinase-like ATPases
C1N50_10140	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_10145	SM00450	Rhodanese Homology Domain
C1N50_10175	SM00382	ATPases associated with a variety of cellular activities
C1N50_10185	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_10195	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C1N50_10195	SM00382	ATPases associated with a variety of cellular activities
C1N50_10225	SM00155	Phospholipase D. Active site motifs.
C1N50_10290	SM00382	ATPases associated with a variety of cellular activities
C1N50_10310	SM00382	ATPases associated with a variety of cellular activities
C1N50_10315	SM00382	ATPases associated with a variety of cellular activities
C1N50_10325	SM01131	C1N50_10325
C1N50_10395	SM00840	C1N50_10395
C1N50_10410	SM00052	Putative diguanylate phosphodiesterase
C1N50_10465	SM00528	Domain in histone-like proteins of HNS family
C1N50_10560	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_10560	SM00876	Biotin and Thiamin Synthesis associated domain
C1N50_10580	SM00382	ATPases associated with a variety of cellular activities
C1N50_10590	SM00843	C1N50_10590
C1N50_10595	SM00344	helix_turn_helix ASNC type
C1N50_10600	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
C1N50_10600	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
C1N50_10675	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_10700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_10700	SM00895	C1N50_10700
C1N50_10705	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_10725	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_10725	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_10745	SM00382	ATPases associated with a variety of cellular activities
C1N50_10750	SM00382	ATPases associated with a variety of cellular activities
C1N50_10860	SM00382	ATPases associated with a variety of cellular activities
C1N50_10990	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_11030	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_11070	SM00387	Histidine kinase-like ATPases
C1N50_11070	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_11070	SM00448	cheY-homologous receiver domain
C1N50_11105	SM00028	Tetratricopeptide repeats
C1N50_11160	SM00382	ATPases associated with a variety of cellular activities
C1N50_11165	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C1N50_11170	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_11250	SM00448	cheY-homologous receiver domain
C1N50_11250	SM00862	Transcriptional regulatory protein, C terminal
C1N50_11260	SM00354	helix_turn _helix lactose operon repressor
C1N50_11295	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
C1N50_11295	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
C1N50_11295	SM00493	C1N50_11295
C1N50_11325	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_11330	SM00382	ATPases associated with a variety of cellular activities
C1N50_11330	SM01086	C-terminal, D2-small domain, of ClpB protein
C1N50_11340	SM00357	Cold shock protein domain
C1N50_11365	SM00491	C1N50_11365
C1N50_11400	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_11400	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
C1N50_11405	SM00382	ATPases associated with a variety of cellular activities
C1N50_11450	SM00763	PrkA AAA domain
C1N50_11480	SM00382	ATPases associated with a variety of cellular activities
C1N50_11485	SM00849	Metallo-beta-lactamase superfamily
C1N50_11500	SM00382	ATPases associated with a variety of cellular activities
C1N50_11515	SM00487	DEAD-like helicases superfamily
C1N50_11515	SM00490	helicase superfamily c-terminal domain
C1N50_11515	SM00982	C1N50_11515
C1N50_11515	SM01058	CarD-like/TRCF domain
C1N50_11565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_11565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_11590	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_11615	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_11615	SM00267	diguanylate cyclase
C1N50_11640	SM00344	helix_turn_helix ASNC type
C1N50_11700	SM00978	C1N50_11700
C1N50_11710	SM00563	Phosphate acyltransferases
C1N50_11740	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
C1N50_11770	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_11775	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_11780	SM01144	C1N50_11780
C1N50_11790	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C1N50_11800	SM00411	bacterial (prokaryotic) histone like domain
C1N50_11805	SM00382	ATPases associated with a variety of cellular activities
C1N50_11805	SM00464	Found in ATP-dependent protease La (LON)
C1N50_11810	SM00382	ATPases associated with a variety of cellular activities
C1N50_11810	SM00994	ClpX C4-type zinc finger
C1N50_11810	SM01086	C-terminal, D2-small domain, of ClpB protein
C1N50_11825	SM00387	Histidine kinase-like ATPases
C1N50_11825	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_11830	SM00382	ATPases associated with a variety of cellular activities
C1N50_11830	SM00448	cheY-homologous receiver domain
C1N50_11880	SM00487	DEAD-like helicases superfamily
C1N50_11880	SM00490	helicase superfamily c-terminal domain
C1N50_11885	SM01091	Transporter associated domain
C1N50_11905	SM00823	Phosphopantetheine attachment site
C1N50_12000	SM00474	3'-5' exonuclease
C1N50_12030	SM00487	DEAD-like helicases superfamily
C1N50_12030	SM00491	C1N50_12030
C1N50_12045	SM00020	Trypsin-like serine protease
C1N50_12065	SM00836	DALR anticodon binding domain
C1N50_12065	SM01016	Arginyl tRNA synthetase N terminal dom
C1N50_12090	SM00899	C1N50_12090
C1N50_12095	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_12105	SM00382	ATPases associated with a variety of cellular activities
C1N50_12115	SM00881	CoA binding domain
C1N50_12130	SM00861	Transketolase, pyrimidine binding domain
C1N50_12250	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
C1N50_12270	SM00387	Histidine kinase-like ATPases
C1N50_12275	SM00862	Transcriptional regulatory protein, C terminal
C1N50_12305	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_12310	SM00938	Nitrogen regulatory protein P-II
C1N50_12345	SM00028	Tetratricopeptide repeats
C1N50_12385	SM00244	prohibitin homologues
C1N50_12410	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C1N50_12410	SM00292	breast cancer carboxy-terminal domain
C1N50_12410	SM00532	Ligase N family
C1N50_12415	SM00771	ZipA, C-terminal domain (FtsZ-binding)
C1N50_12475	SM00047	Lysozyme subfamily 2
C1N50_12520	SM00138	Methyltransferase, chemotaxis proteins 
C1N50_12525	SM00260	Two component signalling adaptor domain
C1N50_12525	SM00448	cheY-homologous receiver domain
C1N50_12530	SM00858	C1N50_12530
C1N50_12615	SM01081	Putative carbohydrate binding domain
C1N50_12645	SM00463	Small MutS-related domain
C1N50_12650	SM00363	S4 RNA-binding domain
C1N50_12685	SM00937	C1N50_12685
C1N50_12705	SM01400	C1N50_12705
C1N50_12840	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_12855	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_12855	SM01091	Transporter associated domain
C1N50_12910	SM00936	Penicillin-binding protein 5, C-terminal domain 
C1N50_12925	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_12940	SM00642	Alpha-amylase domain
C1N50_12950	SM00354	helix_turn _helix lactose operon repressor
C1N50_12960	SM00382	ATPases associated with a variety of cellular activities
C1N50_12960	SM00930	C1N50_12960
C1N50_13000	SM00028	Tetratricopeptide repeats
C1N50_13005	SM00267	diguanylate cyclase
C1N50_13015	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
C1N50_13015	SM00475	5'-3' exonuclease
C1N50_13020	SM00477	DNA/RNA non-specific endonuclease
C1N50_13020	SM00892	DNA/RNA non-specific endonuclease
C1N50_13045	SM00981	C1N50_13045
C1N50_13070	SM00861	Transketolase, pyrimidine binding domain
C1N50_13120	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
C1N50_13175	SM01211	C1N50_13175
C1N50_13180	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_13225	SM00271	DnaJ molecular chaperone homology domain
C1N50_13305	SM00487	DEAD-like helicases superfamily
C1N50_13410	SM00495	Chitin-binding domain type 3
C1N50_13425	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_13425	SM01240	C1N50_13425
C1N50_13440	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C1N50_13440	SM00267	diguanylate cyclase
C1N50_13450	SM00382	ATPases associated with a variety of cellular activities
C1N50_13455	SM00564	beta-propeller repeat
C1N50_13475	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_13485	SM00562	C1N50_13485
C1N50_13510	SM00271	DnaJ molecular chaperone homology domain
C1N50_13555	SM01323	C1N50_13555
C1N50_13570	SM00020	Trypsin-like serine protease
C1N50_13580	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_13635	SM00382	ATPases associated with a variety of cellular activities
C1N50_13665	SM00091	PAS domain
C1N50_13665	SM00387	Histidine kinase-like ATPases
C1N50_13665	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_13670	SM00448	cheY-homologous receiver domain
C1N50_13670	SM00862	Transcriptional regulatory protein, C terminal
C1N50_13750	SM00382	ATPases associated with a variety of cellular activities
C1N50_13750	SM01086	C-terminal, D2-small domain, of ClpB protein
C1N50_13760	SM00363	S4 RNA-binding domain
C1N50_13770	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_13780	SM00830	Chorismate mutase type II
C1N50_13800	SM00382	ATPases associated with a variety of cellular activities
C1N50_13815	SM00830	Chorismate mutase type II
C1N50_13860	SM00448	cheY-homologous receiver domain
C1N50_13860	SM00850	LytTr DNA-binding domain
C1N50_13885	SM00904	Riboflavin kinase
C1N50_13900	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C1N50_13930	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C1N50_13940	SM00927	DNA mismatch repair enzyme MutH
C1N50_13965	SM00382	ATPases associated with a variety of cellular activities
C1N50_14010	SM00487	DEAD-like helicases superfamily
C1N50_14010	SM00490	helicase superfamily c-terminal domain
C1N50_14040	SM00986	Uracil DNA glycosylase superfamily
C1N50_14040	SM00987	UreE urease accessory protein, C-terminal domain 
C1N50_14045	SM00518	AP endonuclease family 2
C1N50_14095	SM00448	cheY-homologous receiver domain
C1N50_14095	SM00862	Transcriptional regulatory protein, C terminal
C1N50_14105	SM00073	Histidine Phosphotransfer domain
C1N50_14105	SM00091	PAS domain
C1N50_14105	SM00387	Histidine kinase-like ATPases
C1N50_14105	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_14105	SM00448	cheY-homologous receiver domain
C1N50_14115	SM00091	PAS domain
C1N50_14115	SM00267	diguanylate cyclase
C1N50_14120	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_14190	SM00851	MGS-like domain
C1N50_14190	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
C1N50_14195	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
C1N50_14210	SM00957	SecA DEAD-like domain
C1N50_14210	SM00958	SecA preprotein cross-linking domain
C1N50_14225	SM00864	Tubulin/FtsZ family, GTPase domain
C1N50_14225	SM00865	Tubulin/FtsZ family, C-terminal domain
C1N50_14230	SM00842	Cell division protein FtsA
C1N50_14325	SM00749	bacterial OsmY and nodulation domain
C1N50_14385	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C1N50_14390	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C1N50_14395	SM00434	DNA Topoisomerase IV
C1N50_14400	SM00387	Histidine kinase-like ATPases
C1N50_14400	SM00433	TopoisomeraseII
C1N50_14440	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_14450	SM00880	C1N50_14450
C1N50_14450	SM01118	C1N50_14450
C1N50_14465	SM00287	Bacterial SH3 domain homologues
C1N50_14475	SM00382	ATPases associated with a variety of cellular activities
C1N50_14495	SM00905	Dihydroneopterin aldolase
C1N50_14500	SM01207	C1N50_14500
C1N50_14525	SM00400	zinc finger
C1N50_14525	SM00493	C1N50_14525
C1N50_14525	SM00766	DNA primase DnaG DnaB-binding
C1N50_14540	SM00382	ATPases associated with a variety of cellular activities
C1N50_14585	SM00563	Phosphate acyltransferases
C1N50_14620	SM00420	helix_turn_helix, Deoxyribose operon repressor
C1N50_14620	SM01134	C1N50_14620
C1N50_14630	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_14630	SM00895	C1N50_14630
C1N50_14635	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C1N50_14635	SM00267	diguanylate cyclase
C1N50_14665	SM00014	Acid phosphatase homologues
C1N50_14685	SM00917	LeuA allosteric (dimerisation) domain
C1N50_14690	SM01329	C1N50_14690
C1N50_14710	SM00271	DnaJ molecular chaperone homology domain
C1N50_14730	SM00650	Ribosomal RNA adenine dimethylases
C1N50_14810	SM00382	ATPases associated with a variety of cellular activities
C1N50_14895	SM00382	ATPases associated with a variety of cellular activities
C1N50_14950	SM00487	DEAD-like helicases superfamily
C1N50_14950	SM00490	helicase superfamily c-terminal domain
C1N50_14985	SM00662	RNA polymerases D
C1N50_14990	SM00363	S4 RNA-binding domain
C1N50_14990	SM01390	C1N50_14990
C1N50_15055	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
C1N50_15060	SM01374	C1N50_15060
C1N50_15080	SM00322	K homology RNA-binding domain
C1N50_15095	SM01382	C1N50_15095
C1N50_15095	SM01383	C1N50_15095
C1N50_15115	SM01403	C1N50_15115
C1N50_15125	SM00487	DEAD-like helicases superfamily
C1N50_15125	SM00490	helicase superfamily c-terminal domain
C1N50_15130	SM00354	helix_turn _helix lactose operon repressor
C1N50_15145	SM00382	ATPases associated with a variety of cellular activities
C1N50_15145	SM01086	C-terminal, D2-small domain, of ClpB protein
C1N50_15215	SM00984	UDP binding domain
C1N50_15275	SM00984	UDP binding domain
C1N50_15280	SM00849	Metallo-beta-lactamase superfamily
C1N50_15280	SM01027	Beta-Casp domain
C1N50_15330	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_15490	SM00672	Putative lipopolysaccharide-modifying enzyme.
C1N50_15510	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
C1N50_15510	SM01232	C1N50_15510
C1N50_15535	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_15535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_15535	SM01049	C1N50_15535
C1N50_15590	SM00382	ATPases associated with a variety of cellular activities
C1N50_15595	SM00382	ATPases associated with a variety of cellular activities
C1N50_15645	SM00028	Tetratricopeptide repeats
C1N50_15655	SM00072	Guanylate kinase homologues.
C1N50_15660	SM01409	C1N50_15660
C1N50_15665	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_15665	SM00954	Region found in RelA / SpoT proteins
C1N50_15675	SM00487	DEAD-like helicases superfamily
C1N50_15675	SM00490	helicase superfamily c-terminal domain
C1N50_15690	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_15690	SM00387	Histidine kinase-like ATPases
C1N50_15690	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_15695	SM00448	cheY-homologous receiver domain
C1N50_15695	SM00862	Transcriptional regulatory protein, C terminal
C1N50_15710	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_15710	SM00732	Likely ribonuclease with RNase H fold.
C1N50_15790	SM00382	ATPases associated with a variety of cellular activities
C1N50_15805	SM00363	S4 RNA-binding domain
C1N50_15860	SM01230	C1N50_15860
C1N50_15870	SM00091	PAS domain
C1N50_15870	SM00387	Histidine kinase-like ATPases
C1N50_15870	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_15875	SM00382	ATPases associated with a variety of cellular activities
C1N50_15875	SM00448	cheY-homologous receiver domain
C1N50_15880	SM00052	Putative diguanylate phosphodiesterase
C1N50_15880	SM00267	diguanylate cyclase
C1N50_15880	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_15890	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_15930	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
C1N50_15930	SM00474	3'-5' exonuclease
C1N50_15930	SM00475	5'-3' exonuclease
C1N50_15930	SM00482	DNA polymerase A domain
C1N50_15945	SM01004	Delta-aminolevulinic acid dehydratase
C1N50_15995	SM00052	Putative diguanylate phosphodiesterase
C1N50_15995	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C1N50_15995	SM00091	PAS domain
C1N50_15995	SM00267	diguanylate cyclase
C1N50_16055	SM00052	Putative diguanylate phosphodiesterase
C1N50_16055	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C1N50_16055	SM00091	PAS domain
C1N50_16055	SM00267	diguanylate cyclase
C1N50_16060	SM00344	helix_turn_helix ASNC type
C1N50_16125	SM00354	helix_turn _helix lactose operon repressor
C1N50_16130	SM00220	Serine/Threonine protein kinases, catalytic domain
C1N50_16150	SM00736	Dystroglycan-type cadherin-like domains.
C1N50_16175	SM00382	ATPases associated with a variety of cellular activities
C1N50_16335	SM01001	AIR carboxylase
C1N50_16360	SM00257	Lysin motif
C1N50_16430	SM00563	Phosphate acyltransferases
C1N50_16440	SM00267	diguanylate cyclase
C1N50_16445	SM00382	ATPases associated with a variety of cellular activities
C1N50_16485	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_16505	SM00382	ATPases associated with a variety of cellular activities
C1N50_16545	SM00470	ParB-like nuclease domain
C1N50_16560	SM01228	C1N50_16560
C1N50_16580	SM01234	C1N50_16580
C1N50_16595	SM00382	ATPases associated with a variety of cellular activities
C1N50_16605	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_16605	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
C1N50_16635	SM00448	cheY-homologous receiver domain
C1N50_16635	SM00862	Transcriptional regulatory protein, C terminal
C1N50_16640	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_16640	SM00387	Histidine kinase-like ATPases
C1N50_16640	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_16715	SM00382	ATPases associated with a variety of cellular activities
C1N50_16755	SM00849	Metallo-beta-lactamase superfamily
C1N50_16785	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_16805	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
C1N50_16805	SM00091	PAS domain
C1N50_16805	SM00387	Histidine kinase-like ATPases
C1N50_16810	SM00382	ATPases associated with a variety of cellular activities
C1N50_16810	SM00448	cheY-homologous receiver domain
C1N50_16900	SM00267	diguanylate cyclase
C1N50_16900	SM01079	C1N50_16900
C1N50_16905	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_16915	SM00267	diguanylate cyclase
C1N50_16950	SM01266	C1N50_16950
C1N50_17045	SM00382	ATPases associated with a variety of cellular activities
C1N50_17055	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_17055	SM00866	C1N50_17055
C1N50_17085	SM00631	C1N50_17085
C1N50_17165	SM00858	C1N50_17165
C1N50_17390	SM00382	ATPases associated with a variety of cellular activities
C1N50_17415	SM00382	ATPases associated with a variety of cellular activities
C1N50_17425	SM00052	Putative diguanylate phosphodiesterase
C1N50_17430	SM00020	Trypsin-like serine protease
C1N50_17450	SM00481	DNA polymerase alpha chain like domain
C1N50_17495	SM00448	cheY-homologous receiver domain
C1N50_17495	SM00862	Transcriptional regulatory protein, C terminal
C1N50_17500	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_17510	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_17515	SM00052	Putative diguanylate phosphodiesterase
C1N50_17515	SM00267	diguanylate cyclase
C1N50_17525	SM00829	Enoylreductase
C1N50_17535	SM01119	C1N50_17535
C1N50_17550	SM00267	diguanylate cyclase
C1N50_17560	SM00829	Enoylreductase
C1N50_17565	SM01057	Eukaryotic-type carbonic anhydrase
C1N50_17600	SM00382	ATPases associated with a variety of cellular activities
C1N50_17615	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_17615	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_17635	SM00587	ZnF_C4 abd HLH domain containing kinases domain
C1N50_17645	SM00226	Low molecular weight phosphatase family
C1N50_17645	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C1N50_17660	SM00382	ATPases associated with a variety of cellular activities
C1N50_17685	SM00267	diguanylate cyclase
C1N50_17690	SM00028	Tetratricopeptide repeats
C1N50_17715	SM00422	helix_turn_helix, mercury resistance
C1N50_17725	SM00257	Lysin motif
C1N50_17735	SM00487	DEAD-like helicases superfamily
C1N50_17735	SM00490	helicase superfamily c-terminal domain
C1N50_17765	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_17765	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_17785	SM00382	ATPases associated with a variety of cellular activities
C1N50_17790	SM00267	diguanylate cyclase
C1N50_17805	SM00327	von Willebrand factor (vWF) type A domain
C1N50_17825	SM00419	helix_turn_helix, cAMP Regulatory protein
C1N50_17830	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_17830	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_17840	SM00421	helix_turn_helix, Lux Regulon
C1N50_17845	SM00421	helix_turn_helix, Lux Regulon
C1N50_17855	SM00382	ATPases associated with a variety of cellular activities
C1N50_17865	SM01266	C1N50_17865
C1N50_17870	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C1N50_17870	SM00448	cheY-homologous receiver domain
C1N50_17875	SM00387	Histidine kinase-like ATPases
C1N50_17875	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_17910	SM00052	Putative diguanylate phosphodiesterase
C1N50_17915	SM00052	Putative diguanylate phosphodiesterase
C1N50_17925	SM00495	Chitin-binding domain type 3
C1N50_17975	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_18005	SM01060	C1N50_18005
C1N50_18015	SM00829	Enoylreductase
C1N50_18025	SM01022	C1N50_18025
C1N50_18085	SM00052	Putative diguanylate phosphodiesterase
C1N50_18115	SM00634	Bacterial Ig-like domain (group 1)
C1N50_18120	SM00382	ATPases associated with a variety of cellular activities
C1N50_18160	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_18240	SM00382	ATPases associated with a variety of cellular activities
C1N50_18270	SM00729	Elongator protein 3, MiaB family, Radical SAM
C1N50_18295	SM00260	Two component signalling adaptor domain
C1N50_18295	SM00448	cheY-homologous receiver domain
C1N50_18305	SM00642	Alpha-amylase domain
C1N50_18325	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C1N50_18390	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_18415	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_18415	SM00387	Histidine kinase-like ATPases
C1N50_18415	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_18420	SM00448	cheY-homologous receiver domain
C1N50_18420	SM00862	Transcriptional regulatory protein, C terminal
C1N50_18430	SM01065	Starch binding domain
C1N50_18470	SM00563	Phosphate acyltransferases
C1N50_18480	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_18485	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_18510	SM00924	MgtE intracellular N domain
C1N50_18530	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_18545	SM00448	cheY-homologous receiver domain
C1N50_18545	SM00862	Transcriptional regulatory protein, C terminal
C1N50_18550	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_18550	SM00387	Histidine kinase-like ATPases
C1N50_18550	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_18560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_18570	SM00344	helix_turn_helix ASNC type
C1N50_18595	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C1N50_18600	SM00387	Histidine kinase-like ATPases
C1N50_18600	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_18600	SM00448	cheY-homologous receiver domain
C1N50_18630	SM00465	GIY-YIG type nucleases (URI domain)
C1N50_18640	SM00387	Histidine kinase-like ATPases
C1N50_18640	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_18640	SM00448	cheY-homologous receiver domain
C1N50_18655	SM00344	helix_turn_helix ASNC type
C1N50_18675	SM00287	Bacterial SH3 domain homologues
C1N50_18705	SM00822	C1N50_18705
C1N50_18745	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C1N50_18760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_18760	SM00387	Histidine kinase-like ATPases
C1N50_18765	SM00421	helix_turn_helix, Lux Regulon
C1N50_18765	SM00448	cheY-homologous receiver domain
C1N50_18805	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_18805	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_18805	SM01358	C1N50_18805
C1N50_18845	SM01322	C1N50_18845
C1N50_18850	SM00357	Cold shock protein domain
C1N50_18865	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_18865	SM00267	diguanylate cyclase
C1N50_18885	SM00382	ATPases associated with a variety of cellular activities
C1N50_18895	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_18895	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_19035	SM00833	Cobalamin synthesis protein cobW C-terminal domain
C1N50_19040	SM00267	diguanylate cyclase
C1N50_19045	SM00487	DEAD-like helicases superfamily
C1N50_19045	SM00490	helicase superfamily c-terminal domain
C1N50_19065	SM00052	Putative diguanylate phosphodiesterase
C1N50_19070	SM00382	ATPases associated with a variety of cellular activities
C1N50_19110	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_19115	SM00316	Ribosomal protein S1-like RNA-binding domain
C1N50_19115	SM00357	Cold shock protein domain
C1N50_19115	SM00955	C1N50_19115
C1N50_19120	SM00487	DEAD-like helicases superfamily
C1N50_19120	SM00490	helicase superfamily c-terminal domain
C1N50_19125	SM00052	Putative diguanylate phosphodiesterase
C1N50_19125	SM00267	diguanylate cyclase
C1N50_19175	SM00862	Transcriptional regulatory protein, C terminal
C1N50_19205	SM00422	helix_turn_helix, mercury resistance
C1N50_19240	SM00822	C1N50_19240
C1N50_19310	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
C1N50_19340	SM00954	Region found in RelA / SpoT proteins
C1N50_19345	SM00382	ATPases associated with a variety of cellular activities
C1N50_19350	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_19350	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
C1N50_19385	SM00052	Putative diguanylate phosphodiesterase
C1N50_19395	SM00893	Electron transfer flavoprotein domain
C1N50_19400	SM00893	Electron transfer flavoprotein domain
C1N50_19415	SM00861	Transketolase, pyrimidine binding domain
C1N50_19470	SM00448	cheY-homologous receiver domain
C1N50_19470	SM00862	Transcriptional regulatory protein, C terminal
C1N50_19475	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_19480	SM00871	Bacterial transcription activator, effector binding domain
C1N50_19485	SM00098	Alkaline phosphatase homologues
C1N50_19505	SM00028	Tetratricopeptide repeats
C1N50_19505	SM00267	diguanylate cyclase
C1N50_19525	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C1N50_19545	SM01012	C1N50_19545
C1N50_19565	SM00382	ATPases associated with a variety of cellular activities
C1N50_19600	SM00331	Sigma factor PP2C-like phosphatases
C1N50_19600	SM00448	cheY-homologous receiver domain
C1N50_19625	SM00636	C1N50_19625
C1N50_19635	SM00867	YceI-like domain 
C1N50_19645	SM00267	diguanylate cyclase
C1N50_19645	SM01079	C1N50_19645
C1N50_19685	SM00028	Tetratricopeptide repeats
C1N50_19770	SM00382	ATPases associated with a variety of cellular activities
C1N50_19780	SM00020	Trypsin-like serine protease
C1N50_19830	SM00382	ATPases associated with a variety of cellular activities
C1N50_19870	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_19965	SM00671	Sel1-like repeats.
C1N50_19985	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_20035	SM00354	helix_turn _helix lactose operon repressor
C1N50_20050	SM00052	Putative diguanylate phosphodiesterase
C1N50_20060	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_20060	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
C1N50_20070	SM00382	ATPases associated with a variety of cellular activities
C1N50_20085	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_20095	SM00495	Chitin-binding domain type 3
C1N50_20095	SM00636	C1N50_20095
C1N50_20125	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C1N50_20140	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_20155	SM00487	DEAD-like helicases superfamily
C1N50_20155	SM00490	helicase superfamily c-terminal domain
C1N50_20160	SM00052	Putative diguanylate phosphodiesterase
C1N50_20180	SM00867	YceI-like domain 
C1N50_20185	SM00116	Domain in cystathionine beta-synthase and other proteins.
C1N50_20230	SM00782	PhnA Zinc-Ribbon
C1N50_20295	SM00271	DnaJ molecular chaperone homology domain
C1N50_20305	SM00052	Putative diguanylate phosphodiesterase
C1N50_20305	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C1N50_20305	SM00267	diguanylate cyclase
C1N50_20320	SM00382	ATPases associated with a variety of cellular activities
C1N50_20335	SM00797	Allophanate hydrolase subunit 2
C1N50_20340	SM00796	Allophanate hydrolase subunit 1
C1N50_20350	SM00091	PAS domain
C1N50_20350	SM00267	diguanylate cyclase
C1N50_20350	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_20375	SM00881	CoA binding domain
C1N50_20545	SM00448	cheY-homologous receiver domain
C1N50_20545	SM00862	Transcriptional regulatory protein, C terminal
C1N50_20550	SM00387	Histidine kinase-like ATPases
C1N50_20550	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_20560	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
C1N50_20560	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
C1N50_20575	SM00267	diguanylate cyclase
C1N50_20580	SM00267	diguanylate cyclase
C1N50_20580	SM00448	cheY-homologous receiver domain
C1N50_20590	SM00382	ATPases associated with a variety of cellular activities
C1N50_20630	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_20665	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C1N50_20670	SM00450	Rhodanese Homology Domain
C1N50_20700	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_20710	SM00421	helix_turn_helix, Lux Regulon
C1N50_20710	SM00448	cheY-homologous receiver domain
C1N50_20715	SM00387	Histidine kinase-like ATPases
C1N50_20750	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_20800	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_20800	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_20800	SM01049	C1N50_20800
C1N50_20850	SM00267	diguanylate cyclase
C1N50_20885	SM00642	Alpha-amylase domain
C1N50_20930	SM00382	ATPases associated with a variety of cellular activities
C1N50_20990	SM00495	Chitin-binding domain type 3
C1N50_20990	SM00636	C1N50_20990
C1N50_21010	SM00860	SMI1 / KNR4 family
C1N50_21040	SM00382	ATPases associated with a variety of cellular activities
C1N50_21040	SM01086	C-terminal, D2-small domain, of ClpB protein
C1N50_21085	SM00331	Sigma factor PP2C-like phosphatases
C1N50_21085	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C1N50_21115	SM00240	Forkhead associated domain
C1N50_21120	SM00220	Serine/Threonine protein kinases, catalytic domain
C1N50_21125	SM00448	cheY-homologous receiver domain
C1N50_21170	SM00953	C1N50_21170
C1N50_21190	SM00849	Metallo-beta-lactamase superfamily
C1N50_21200	SM00710	Parallel beta-helix repeats
C1N50_21245	SM00014	Acid phosphatase homologues
C1N50_21280	SM00260	Two component signalling adaptor domain
C1N50_21280	SM00448	cheY-homologous receiver domain
C1N50_21290	SM00421	helix_turn_helix, Lux Regulon
C1N50_21290	SM00448	cheY-homologous receiver domain
C1N50_21305	SM00267	diguanylate cyclase
C1N50_21305	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_21360	SM00240	Forkhead associated domain
C1N50_21380	SM00344	helix_turn_helix ASNC type
C1N50_21415	SM00220	Serine/Threonine protein kinases, catalytic domain
C1N50_21450	SM00382	ATPases associated with a variety of cellular activities
C1N50_21450	SM01086	C-terminal, D2-small domain, of ClpB protein
C1N50_21455	SM00382	ATPases associated with a variety of cellular activities
C1N50_21495	SM00387	Histidine kinase-like ATPases
C1N50_21495	SM00448	cheY-homologous receiver domain
C1N50_21540	SM00990	C1N50_21540
C1N50_21545	SM00028	Tetratricopeptide repeats
C1N50_21575	SM00046	Diacylglycerol kinase catalytic domain (presumed)
C1N50_21595	SM00382	ATPases associated with a variety of cellular activities
C1N50_21645	SM00327	von Willebrand factor (vWF) type A domain
C1N50_21665	SM00028	Tetratricopeptide repeats
C1N50_21680	SM00448	cheY-homologous receiver domain
C1N50_21680	SM00862	Transcriptional regulatory protein, C terminal
C1N50_21685	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_21685	SM00387	Histidine kinase-like ATPases
C1N50_21685	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_21705	SM00073	Histidine Phosphotransfer domain
C1N50_21705	SM00387	Histidine kinase-like ATPases
C1N50_21705	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_21705	SM00448	cheY-homologous receiver domain
C1N50_21715	SM00851	MGS-like domain
C1N50_21750	SM00422	helix_turn_helix, mercury resistance
C1N50_21755	SM00382	ATPases associated with a variety of cellular activities
C1N50_21800	SM00354	helix_turn _helix lactose operon repressor
C1N50_21820	SM00382	ATPases associated with a variety of cellular activities
C1N50_21830	SM00052	Putative diguanylate phosphodiesterase
C1N50_21830	SM00267	diguanylate cyclase
C1N50_21905	SM00387	Histidine kinase-like ATPases
C1N50_21905	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_21905	SM00448	cheY-homologous receiver domain
C1N50_21915	SM00073	Histidine Phosphotransfer domain
C1N50_21915	SM00387	Histidine kinase-like ATPases
C1N50_21915	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_21915	SM00448	cheY-homologous receiver domain
C1N50_21920	SM00052	Putative diguanylate phosphodiesterase
C1N50_21920	SM00448	cheY-homologous receiver domain
C1N50_21925	SM00448	cheY-homologous receiver domain
C1N50_21935	SM00244	prohibitin homologues
C1N50_21945	SM00382	ATPases associated with a variety of cellular activities
C1N50_21975	SM00267	diguanylate cyclase
C1N50_22030	SM00382	ATPases associated with a variety of cellular activities
C1N50_22100	SM01240	C1N50_22100
C1N50_22115	SM00448	cheY-homologous receiver domain
C1N50_22160	SM00852	Probable molybdopterin binding domain
C1N50_22215	SM00450	Rhodanese Homology Domain
C1N50_22225	SM00636	C1N50_22225
C1N50_22245	SM00861	Transketolase, pyrimidine binding domain
C1N50_22250	SM00091	PAS domain
C1N50_22250	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_22330	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_22390	SM00052	Putative diguanylate phosphodiesterase
C1N50_22390	SM00267	diguanylate cyclase
C1N50_22425	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_22425	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_22445	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_22455	SM00481	DNA polymerase alpha chain like domain
C1N50_22505	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C1N50_22520	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_22575	SM01119	C1N50_22575
C1N50_22585	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_22585	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_22595	SM00382	ATPases associated with a variety of cellular activities
C1N50_22620	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C1N50_22685	SM01235	C1N50_22685
C1N50_22710	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_22720	SM00382	ATPases associated with a variety of cellular activities
C1N50_22735	SM00420	helix_turn_helix, Deoxyribose operon repressor
C1N50_22735	SM01134	C1N50_22735
C1N50_22760	SM00382	ATPases associated with a variety of cellular activities
C1N50_22775	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_22815	SM00357	Cold shock protein domain
C1N50_22865	SM00936	Penicillin-binding protein 5, C-terminal domain 
C1N50_22955	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_23005	SM00387	Histidine kinase-like ATPases
C1N50_23005	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_23010	SM00448	cheY-homologous receiver domain
C1N50_23010	SM00862	Transcriptional regulatory protein, C terminal
C1N50_23020	SM00822	C1N50_23020
C1N50_23060	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_23060	SM00871	Bacterial transcription activator, effector binding domain
C1N50_23110	SM00487	DEAD-like helicases superfamily
C1N50_23110	SM00490	helicase superfamily c-terminal domain
C1N50_23115	SM00849	Metallo-beta-lactamase superfamily
C1N50_23160	SM00382	ATPases associated with a variety of cellular activities
C1N50_23200	SM00788	Adenylosuccinate synthetase
C1N50_23210	SM00052	Putative diguanylate phosphodiesterase
C1N50_23215	SM00870	C1N50_23215
C1N50_23235	SM00421	helix_turn_helix, Lux Regulon
C1N50_23245	SM00886	Stress responsive A/B Barrel Domain
C1N50_23270	SM00267	diguanylate cyclase
C1N50_23275	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_23280	SM00421	helix_turn_helix, Lux Regulon
C1N50_23335	SM00155	Phospholipase D. Active site motifs.
C1N50_23350	SM01022	C1N50_23350
C1N50_23355	SM00028	Tetratricopeptide repeats
C1N50_23360	SM00422	helix_turn_helix, mercury resistance
C1N50_23375	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
C1N50_23410	SM00382	ATPases associated with a variety of cellular activities
C1N50_23435	SM00062	Bacterial periplasmic substrate-binding proteins
C1N50_23480	SM00248	ankyrin repeats
C1N50_23485	SM01060	C1N50_23485
C1N50_23500	SM00420	helix_turn_helix, Deoxyribose operon repressor
C1N50_23500	SM01134	C1N50_23500
C1N50_23565	SM00450	Rhodanese Homology Domain
C1N50_23595	SM00382	ATPases associated with a variety of cellular activities
C1N50_23690	SM00387	Histidine kinase-like ATPases
C1N50_23690	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_23695	SM00448	cheY-homologous receiver domain
C1N50_23695	SM00862	Transcriptional regulatory protein, C terminal
C1N50_23710	SM01192	C1N50_23710
C1N50_23710	SM01193	C1N50_23710
C1N50_23815	SM00936	Penicillin-binding protein 5, C-terminal domain 
C1N50_23830	SM00450	Rhodanese Homology Domain
C1N50_23845	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
C1N50_23880	SM00226	Low molecular weight phosphatase family
C1N50_23950	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_23960	SM00642	Alpha-amylase domain
C1N50_23975	SM00642	Alpha-amylase domain
C1N50_23995	SM00421	helix_turn_helix, Lux Regulon
C1N50_24045	SM00966	SpoVT / AbrB like domain 
C1N50_24065	SM00671	Sel1-like repeats.
C1N50_24070	SM00642	Alpha-amylase domain
C1N50_24080	SM00642	Alpha-amylase domain
C1N50_24100	SM00642	Alpha-amylase domain
C1N50_24105	SM00267	diguanylate cyclase
C1N50_24145	SM00857	Resolvase, N terminal domain
C1N50_24230	SM00530	Helix-turn-helix XRE-family like proteins 
C1N50_24255	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_24255	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_24290	SM00382	ATPases associated with a variety of cellular activities
C1N50_24305	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_24345	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_24405	SM01007	Class II Aldolase and Adducin N-terminal domain
C1N50_24420	SM00420	helix_turn_helix, Deoxyribose operon repressor
C1N50_24420	SM01134	C1N50_24420
C1N50_24430	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_24435	SM00829	Enoylreductase
C1N50_24440	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_24440	SM00871	Bacterial transcription activator, effector binding domain
C1N50_24450	SM00344	helix_turn_helix ASNC type
C1N50_24470	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_24495	SM00487	DEAD-like helicases superfamily
C1N50_24495	SM00490	helicase superfamily c-terminal domain
C1N50_24515	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_24515	SM00895	C1N50_24515
C1N50_24575	SM00634	Bacterial Ig-like domain (group 1)
C1N50_24585	SM00382	ATPases associated with a variety of cellular activities
C1N50_24595	SM00344	helix_turn_helix ASNC type
C1N50_24625	SM00360	RNA recognition motif
C1N50_24650	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_24655	SM00421	helix_turn_helix, Lux Regulon
C1N50_24665	SM00387	Histidine kinase-like ATPases
C1N50_24670	SM00448	cheY-homologous receiver domain
C1N50_24685	SM00052	Putative diguanylate phosphodiesterase
C1N50_24685	SM00267	diguanylate cyclase
C1N50_24690	SM00382	ATPases associated with a variety of cellular activities
C1N50_24800	SM00470	ParB-like nuclease domain
C1N50_24820	SM00382	ATPases associated with a variety of cellular activities
C1N50_24825	SM00382	ATPases associated with a variety of cellular activities
C1N50_24845	SM00387	Histidine kinase-like ATPases
C1N50_24845	SM00388	His Kinase A (phosphoacceptor) domain
C1N50_24845	SM00448	cheY-homologous receiver domain
C1N50_24880	SM00382	ATPases associated with a variety of cellular activities
C1N50_24900	SM00387	Histidine kinase-like ATPases
C1N50_24905	SM00448	cheY-homologous receiver domain
C1N50_24905	SM00850	LytTr DNA-binding domain
C1N50_24920	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
C1N50_24920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C1N50_24920	SM01049	C1N50_24920
C1N50_24975	SM00382	ATPases associated with a variety of cellular activities
C1N50_24980	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_25030	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_25030	SM01009	AlkA N-terminal domain
C1N50_25075	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
C1N50_25075	SM00495	Chitin-binding domain type 3
C1N50_25075	SM00636	C1N50_25075
C1N50_25095	SM00267	diguanylate cyclase
C1N50_25105	SM00354	helix_turn _helix lactose operon repressor
C1N50_25130	SM00382	ATPases associated with a variety of cellular activities
C1N50_25135	SM00354	helix_turn _helix lactose operon repressor
C1N50_25160	SM00382	ATPases associated with a variety of cellular activities
C1N50_25165	SM00382	ATPases associated with a variety of cellular activities
C1N50_25175	SM00354	helix_turn _helix lactose operon repressor
C1N50_25190	SM00342	helix_turn_helix, arabinose operon control protein
C1N50_25195	SM01217	C1N50_25195
C1N50_25220	SM00267	diguanylate cyclase
C1N50_25245	SM00829	Enoylreductase
C1N50_25295	SM00344	helix_turn_helix ASNC type
C1N50_25300	SM00495	Chitin-binding domain type 3
C1N50_25455	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C1N50_25475	SM00347	helix_turn_helix multiple antibiotic resistance protein
C1N50_25515	SM00822	C1N50_25515
C1N50_25535	SM00014	Acid phosphatase homologues
C1N50_25565	SM00382	ATPases associated with a variety of cellular activities
