locus-tag class description VAA049_1 PF11638 DnaA N-terminal domain VAA049_1 PF08299 Bacterial dnaA protein helix-turn-helix VAA049_1 PF00308 Bacterial dnaA protein VAA049_10 PF02091 Glycyl-tRNA synthetase alpha subunit VAA049_100 PF06969 HemN C-terminal domain VAA049_100 PF04055 Radical SAM superfamily VAA049_1000 PF06798 PrkA serine protein kinase C-terminal domain VAA049_1000 PF08298 PrkA AAA domain VAA049_1001 PF03887 YfbU domain VAA049_1003 PF04055 Radical SAM superfamily VAA049_1004 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1004 PF00672 HAMP domain VAA049_1004 PF12729 Four helix bundle sensory module for signal transduction VAA049_1006 PF02901 Pyruvate formate lyase-like VAA049_1006 PF01228 Glycine radical VAA049_1009 PF00005 ABC transporter VAA049_101 PF07219 HemY protein N-terminus VAA049_1010 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_1011 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1012 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1013 PF03372 Endonuclease/Exonuclease/phosphatase family VAA049_1014 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1014 PF00672 HAMP domain VAA049_1015 PF10689 Protein of unknown function (DUF2496) VAA049_1016 PF07445 Primosomal replication protein priC VAA049_1017 PF01925 Sulfite exporter TauE/SafE VAA049_1018 PF13307 Helicase C-terminal domain VAA049_1018 PF06733 DEAD_2 VAA049_1019 PF13609 Gram-negative porin VAA049_102 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VAA049_1020 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VAA049_1022 PF02810 SEC-C motif VAA049_1023 PF08668 HDOD domain VAA049_1023 PF00563 EAL domain VAA049_1024 PF00149 Calcineurin-like phosphoesterase VAA049_1025 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VAA049_1026 PF01406 tRNA synthetases class I (C) catalytic domain VAA049_1026 PF09190 DALR domain VAA049_1027 PF02075 Crossover junction endodeoxyribonuclease RuvC VAA049_1028 PF01330 RuvA N terminal domain VAA049_1028 PF07499 RuvA, C-terminal domain VAA049_1029 PF17864 RuvB AAA lid domain VAA049_1029 PF05491 RuvB C-terminal winged helix domain VAA049_1029 PF05496 Holliday junction DNA helicase RuvB P-loop domain VAA049_103 PF02602 Uroporphyrinogen-III synthase HemD VAA049_1030 PF01654 Cytochrome bd terminal oxidase subunit I VAA049_1031 PF02322 Cytochrome bd terminal oxidase subunit II VAA049_1032 PF08173 Membrane bound YbgT-like protein VAA049_1033 PF03061 Thioesterase superfamily VAA049_1034 PF01618 MotA/TolQ/ExbB proton channel family VAA049_1035 PF02472 Biopolymer transport protein ExbD/TolR VAA049_1037 PF04052 TolB amino-terminal domain VAA049_1037 PF07676 WD40-like Beta Propeller Repeat VAA049_1038 PF00691 OmpA family VAA049_104 PF03900 Porphobilinogen deaminase, C-terminal domain VAA049_104 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VAA049_1040 PF02445 Quinolinate synthetase A protein VAA049_1042 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1042 PF00072 Response regulator receiver domain VAA049_1042 PF09308 LuxQ, periplasmic VAA049_1042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1043 PF06610 L-alanine exporter VAA049_1044 PF01238 Phosphomannose isomerase type I VAA049_1045 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA049_1045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA049_1045 PF02378 Phosphotransferase system, EIIC VAA049_1047 PF12833 Helix-turn-helix domain VAA049_1048 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA049_105 PF12633 Adenylate cyclase NT domain VAA049_105 PF01295 Adenylate cyclase, class-I VAA049_1051 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA049_1051 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA049_1052 PF00171 Aldehyde dehydrogenase family VAA049_1053 PF00158 Sigma-54 interaction domain VAA049_1053 PF02954 Bacterial regulatory protein, Fis family VAA049_1053 PF01590 GAF domain VAA049_1054 PF09905 DNA-binding protein VF530 VAA049_1056 PF03441 FAD binding domain of DNA photolyase VAA049_1056 PF00875 DNA photolyase VAA049_106 PF01491 Frataxin-like domain VAA049_1061 PF00873 AcrB/AcrD/AcrF family VAA049_1062 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA049_1064 PF02470 MlaD protein VAA049_1065 PF04403 Paraquat-inducible protein A VAA049_1066 PF00440 Bacterial regulatory proteins, tetR family VAA049_1066 PF08362 YcdC-like protein, C-terminal region VAA049_1067 PF07383 Protein of unknown function (DUF1496) VAA049_1068 PF00171 Aldehyde dehydrogenase family VAA049_107 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VAA049_107 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VAA049_1070 PF00440 Bacterial regulatory proteins, tetR family VAA049_1070 PF16295 Tetracyclin repressor-like, C-terminal domain VAA049_1071 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VAA049_1071 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VAA049_1071 PF09317 Domain of unknown function (DUF1974) VAA049_1071 PF02770 Acyl-CoA dehydrogenase, middle domain VAA049_1072 PF12241 Trans-2-enoyl-CoA reductase catalytic region VAA049_1072 PF07055 Enoyl reductase FAD binding domain VAA049_1072 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VAA049_1073 PF01176 Translation initiation factor 1A / IF-1 VAA049_1074 PF04376 Arginine-tRNA-protein transferase, N terminus VAA049_1074 PF04377 Arginine-tRNA-protein transferase, C terminus VAA049_1075 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VAA049_1076 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VAA049_1077 PF10692 Protein of unknown function (DUF2498) VAA049_1078 PF01396 Topoisomerase DNA binding C4 zinc finger VAA049_1078 PF01131 DNA topoisomerase VAA049_1078 PF08272 Topoisomerase I zinc-ribbon-like VAA049_1078 PF01751 Toprim domain VAA049_1079 PF00483 Nucleotidyl transferase VAA049_108 PF01678 Diaminopimelate epimerase VAA049_1080 PF00534 Glycosyl transferases group 1 VAA049_1080 PF08323 Starch synthase catalytic domain VAA049_1084 PF04993 TfoX N-terminal domain VAA049_1084 PF04994 TfoX C-terminal domain VAA049_1085 PF00356 Bacterial regulatory proteins, lacI family VAA049_1086 PF02613 Nitrate reductase delta subunit VAA049_1087 PF00486 Transcriptional regulatory protein, C terminal VAA049_1087 PF00072 Response regulator receiver domain VAA049_1088 PF02698 DUF218 domain VAA049_109 PF04340 Protein of unknown function, DUF484 VAA049_1090 PF17192 MukF middle domain VAA049_1090 PF03882 MukF winged-helix domain VAA049_1090 PF17193 MukF C-terminal domain VAA049_1091 PF04288 MukE-like family VAA049_1092 PF16330 MukB hinge domain VAA049_1092 PF04310 MukB N-terminal VAA049_1093 PF01037 Lrp/AsnC ligand binding domain VAA049_1094 PF01810 LysE type translocator VAA049_1095 PF08497 Radical SAM N-terminal VAA049_1095 PF11842 Domain of unknown function (DUF3362) VAA049_1095 PF04055 Radical SAM superfamily VAA049_1096 PF00563 EAL domain VAA049_1096 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1096 PF08447 PAS fold VAA049_1096 PF08448 PAS fold VAA049_1097 PF05193 Peptidase M16 inactive domain VAA049_1097 PF00675 Insulinase (Peptidase family M16) VAA049_11 PF01169 Uncharacterized protein family UPF0016 VAA049_110 PF00589 Phage integrase family VAA049_110 PF02899 Phage integrase, N-terminal SAM-like domain VAA049_1100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1100 PF03466 LysR substrate binding domain VAA049_1101 PF08267 Cobalamin-independent synthase, N-terminal domain VAA049_1101 PF01717 Cobalamin-independent synthase, Catalytic domain VAA049_1103 PF03795 YCII-related domain VAA049_1104 PF03061 Thioesterase superfamily VAA049_1105 PF04279 Intracellular septation protein A VAA049_1107 PF02698 DUF218 domain VAA049_1108 PF01370 NAD dependent epimerase/dehydratase family VAA049_111 PF13419 Haloacid dehalogenase-like hydrolase VAA049_1110 PF01226 Formate/nitrite transporter VAA049_1111 PF06796 Periplasmic nitrate reductase protein NapE VAA049_1112 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA049_1113 PF00384 Molybdopterin oxidoreductase VAA049_1113 PF18364 Molybdopterin oxidoreductase N-terminal domain VAA049_1113 PF01568 Molydopterin dinucleotide binding domain VAA049_1116 PF01368 DHH family VAA049_1116 PF02833 DHHA2 domain VAA049_1119 PF00005 ABC transporter VAA049_112 PF00990 Diguanylate cyclase, GGDEF domain VAA049_112 PF10442 FIST C domain VAA049_112 PF08495 FIST N domain VAA049_112 PF00563 EAL domain VAA049_1120 PF00005 ABC transporter VAA049_1120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA049_1121 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA049_1121 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1122 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1123 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA049_1124 PF02954 Bacterial regulatory protein, Fis family VAA049_1124 PF00158 Sigma-54 interaction domain VAA049_1125 PF04012 PspA/IM30 family VAA049_1128 PF00529 HlyD membrane-fusion protein of T1SS VAA049_1128 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA049_1129 PF13533 Biotin-lipoyl like VAA049_1130 PF00873 AcrB/AcrD/AcrF family VAA049_1131 PF03352 Methyladenine glycosylase VAA049_1132 PF01053 Cys/Met metabolism PLP-dependent enzyme VAA049_1133 PF13091 PLD-like domain VAA049_1133 PF13396 Phospholipase_D-nuclease N-terminal VAA049_1134 PF00209 Sodium:neurotransmitter symporter family VAA049_1135 PF00849 RNA pseudouridylate synthase VAA049_1136 PF01066 CDP-alcohol phosphatidyltransferase VAA049_1137 PF00005 ABC transporter VAA049_1138 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1139 PF13416 Bacterial extracellular solute-binding protein VAA049_1141 PF06945 Protein of unknown function (DUF1289) VAA049_1144 PF00005 ABC transporter VAA049_1145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA049_1146 PF03222 Tryptophan/tyrosine permease family VAA049_1149 PF03448 MgtE intracellular N domain VAA049_1149 PF01769 Divalent cation transporter VAA049_1149 PF00571 CBS domain VAA049_1150 PF00072 Response regulator receiver domain VAA049_1150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1150 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1150 PF09308 LuxQ, periplasmic VAA049_1151 PF03707 Bacterial signalling protein N terminal repeat VAA049_1151 PF00563 EAL domain VAA049_1151 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1153 PF08453 Peptidase family M9 N-terminal VAA049_1153 PF04151 Bacterial pre-peptidase C-terminal domain VAA049_1153 PF01752 Collagenase VAA049_1155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA049_1155 PF12793 Sugar transport-related sRNA regulator N-term VAA049_1156 PF13737 Transposase DDE domain VAA049_116 PF12146 Serine aminopeptidase, S33 VAA049_1161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1161 PF00672 HAMP domain VAA049_1161 PF12729 Four helix bundle sensory module for signal transduction VAA049_1163 PF01590 GAF domain VAA049_1163 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1163 PF00360 Phytochrome region VAA049_1163 PF00563 EAL domain VAA049_1164 PF01386 Ribosomal L25p family VAA049_1165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1165 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1165 PF11808 Phosphate regulon sensor protein PhoR VAA049_1165 PF00989 PAS fold VAA049_1166 PF00486 Transcriptional regulatory protein, C terminal VAA049_1166 PF00072 Response regulator receiver domain VAA049_1168 PF04851 Type III restriction enzyme, res subunit VAA049_1168 PF00271 Helicase conserved C-terminal domain VAA049_1169 PF00849 RNA pseudouridylate synthase VAA049_1169 PF01479 S4 domain VAA049_117 PF01810 LysE type translocator VAA049_1170 PF07690 Major Facilitator Superfamily VAA049_1172 PF11066 Protein of unknown function (DUF2867) VAA049_1172 PF13460 NAD(P)H-binding VAA049_1173 PF01554 MatE VAA049_1174 PF00005 ABC transporter VAA049_1177 PF06965 Na+/H+ antiporter 1 VAA049_1178 PF00202 Aminotransferase class-III VAA049_1179 PF03435 Saccharopine dehydrogenase NADP binding domain VAA049_1179 PF16653 Saccharopine dehydrogenase C-terminal domain VAA049_118 PF00563 EAL domain VAA049_118 PF08668 HDOD domain VAA049_1181 PF05736 OprF membrane domain VAA049_1181 PF00691 OmpA family VAA049_1182 PF02321 Outer membrane efflux protein VAA049_1187 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1187 PF03466 LysR substrate binding domain VAA049_1189 PF01863 Protein of unknown function DUF45 VAA049_119 PF00210 Ferritin-like domain VAA049_1190 PF05971 RNA methyltransferase VAA049_1193 PF04204 Homoserine O-succinyltransferase VAA049_1197 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA049_1200 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VAA049_1200 PF17203 Single cache domain 3 VAA049_1200 PF00989 PAS fold VAA049_1200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1201 PF12431 Transcriptional regulator VAA049_1201 PF00072 Response regulator receiver domain VAA049_1203 PF00072 Response regulator receiver domain VAA049_1203 PF01584 CheW-like domain VAA049_1206 PF00072 Response regulator receiver domain VAA049_1206 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1210 PF07690 Major Facilitator Superfamily VAA049_1211 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VAA049_1211 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VAA049_1212 PF10509 Galactokinase galactose-binding signature VAA049_1212 PF08544 GHMP kinases C terminal VAA049_1212 PF00288 GHMP kinases N terminal domain VAA049_1213 PF01263 Aldose 1-epimerase VAA049_1214 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1215 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1215 PF17154 Gammaproteobacterial periplasmic sensor domain VAA049_1215 PF00563 EAL domain VAA049_1215 PF00672 HAMP domain VAA049_1217 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA049_1217 PF00205 Thiamine pyrophosphate enzyme, central domain VAA049_1217 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA049_1218 PF03306 Alpha-acetolactate decarboxylase VAA049_1219 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) VAA049_1220 PF03466 LysR substrate binding domain VAA049_1220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1221 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VAA049_1221 PF00361 Proton-conducting membrane transporter VAA049_1222 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1222 PF03466 LysR substrate binding domain VAA049_1223 PF13193 AMP-binding enzyme C-terminal domain VAA049_1223 PF00501 AMP-binding enzyme VAA049_1229 PF10415 Fumarase C C-terminus VAA049_1229 PF00206 Lyase VAA049_1231 PF01654 Cytochrome bd terminal oxidase subunit I VAA049_1232 PF02322 Cytochrome bd terminal oxidase subunit II VAA049_1233 PF02687 FtsX-like permease family VAA049_1233 PF12704 MacB-like periplasmic core domain VAA049_1233 PF00005 ABC transporter VAA049_1234 PF12704 MacB-like periplasmic core domain VAA049_1234 PF00005 ABC transporter VAA049_1234 PF02687 FtsX-like permease family VAA049_1235 PF00005 ABC transporter VAA049_1235 PF02687 FtsX-like permease family VAA049_1235 PF12704 MacB-like periplasmic core domain VAA049_1237 PF00529 HlyD membrane-fusion protein of T1SS VAA049_1239 PF03466 LysR substrate binding domain VAA049_1239 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1240 PF00141 Peroxidase VAA049_1241 PF00232 Glycosyl hydrolase family 1 VAA049_1242 PF00356 Bacterial regulatory proteins, lacI family VAA049_1243 PF01042 Endoribonuclease L-PSP VAA049_1244 PF04074 YhcH/YjgK/YiaL VAA049_1245 PF03009 Glycerophosphoryl diester phosphodiesterase family VAA049_1246 PF00455 DeoR C terminal sensor domain VAA049_1246 PF08220 DeoR-like helix-turn-helix domain VAA049_1247 PF00005 ABC transporter VAA049_1247 PF17912 MalK OB fold domain VAA049_1248 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1249 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_125 PF00448 SRP54-type protein, GTPase domain VAA049_125 PF02881 SRP54-type protein, helical bundle domain VAA049_1250 PF13416 Bacterial extracellular solute-binding protein VAA049_1252 PF01618 MotA/TolQ/ExbB proton channel family VAA049_1253 PF01618 MotA/TolQ/ExbB proton channel family VAA049_1254 PF02472 Biopolymer transport protein ExbD/TolR VAA049_1255 PF03544 Gram-negative bacterial TonB protein C-terminal VAA049_1257 PF01068 ATP dependent DNA ligase domain VAA049_1257 PF14743 DNA ligase OB-like domain VAA049_1259 PF01554 MatE VAA049_126 PF00005 ABC transporter VAA049_1263 PF00877 NlpC/P60 family VAA049_1264 PF00672 HAMP domain VAA049_1264 PF02743 Cache domain VAA049_1264 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1267 PF00480 ROK family VAA049_127 PF18075 FtsX extracellular domain VAA049_1270 PF03453 MoeA N-terminal region (domain I and II) VAA049_1270 PF00994 Probable molybdopterin binding domain VAA049_1270 PF03454 MoeA C-terminal region (domain IV) VAA049_1271 PF12804 MobA-like NTP transferase domain VAA049_1272 PF08402 TOBE domain VAA049_1272 PF00005 ABC transporter VAA049_1273 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1274 PF12849 PBP superfamily domain VAA049_1275 PF00072 Response regulator receiver domain VAA049_1275 PF00158 Sigma-54 interaction domain VAA049_1275 PF02954 Bacterial regulatory protein, Fis family VAA049_1276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1276 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1276 PF00989 PAS fold VAA049_1277 PF00005 ABC transporter VAA049_1277 PF12848 ABC transporter VAA049_1278 PF02634 FdhD/NarQ family VAA049_128 PF04542 Sigma-70 region 2 VAA049_128 PF00140 Sigma-70 factor, region 1.2 VAA049_128 PF04545 Sigma-70, region 4 VAA049_1282 PF02613 Nitrate reductase delta subunit VAA049_1284 PF01568 Molydopterin dinucleotide binding domain VAA049_1284 PF00384 Molybdopterin oxidoreductase VAA049_1284 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VAA049_1285 PF13247 4Fe-4S dicluster domain VAA049_1288 PF02146 Sir2 family VAA049_1289 PF04461 Protein of unknown function (DUF520) VAA049_129 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA049_129 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_1290 PF00793 DAHP synthetase I family VAA049_1293 PF17783 CvfB-like winged helix domain VAA049_1293 PF13509 S1 domain VAA049_1294 PF01189 16S rRNA methyltransferase RsmB/F VAA049_1294 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VAA049_1294 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VAA049_1295 PF02470 MlaD protein VAA049_1296 PF04403 Paraquat-inducible protein A VAA049_1297 PF00664 ABC transporter transmembrane region VAA049_1297 PF00005 ABC transporter VAA049_1298 PF13185 GAF domain VAA049_1299 PF04352 ProQ/FINO family VAA049_1299 PF17516 ProQ C-terminal domain VAA049_13 PF01206 Sulfurtransferase TusA VAA049_130 PF00440 Bacterial regulatory proteins, tetR family VAA049_1300 PF00595 PDZ domain VAA049_1300 PF03572 Peptidase family S41 VAA049_1300 PF17804 Tail specific protease N-terminal domain VAA049_1300 PF11818 C-terminal domain of tail specific protease (DUF3340) VAA049_1302 PF11940 Domain of unknown function (DUF3458) Ig-like fold VAA049_1302 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VAA049_1302 PF01433 Peptidase family M1 domain VAA049_1303 PF05088 Bacterial NAD-glutamate dehydrogenase VAA049_1304 PF01180 Dihydroorotate dehydrogenase VAA049_1305 PF07126 Cell-division protein ZapC VAA049_1306 PF01170 Putative RNA methylase family UPF0020 VAA049_1306 PF02926 THUMP domain VAA049_1306 PF10672 S-adenosylmethionine-dependent methyltransferase VAA049_1310 PF04957 Ribosome modulation factor VAA049_1311 PF07977 FabA-like domain VAA049_1312 PF13654 AAA domain VAA049_1312 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA049_1313 PF17414 MatP C-terminal ribbon-helix-helix domain VAA049_1313 PF06303 MatP N-terminal domain VAA049_132 PF05958 tRNA (Uracil-5-)-methyltransferase VAA049_133 PF07715 TonB-dependent Receptor Plug Domain VAA049_133 PF00593 TonB dependent receptor VAA049_134 PF05922 Peptidase inhibitor I9 VAA049_134 PF04151 Bacterial pre-peptidase C-terminal domain VAA049_134 PF00082 Subtilase family VAA049_1356 PF16671 Actin cross-linking domain VAA049_1356 PF12146 Serine aminopeptidase, S33 VAA049_1356 PF11647 Membrane Localization Domain VAA049_1356 PF07634 RtxA repeat VAA049_1356 PF11713 Peptidase C80 family VAA049_1357 PF02794 RTX toxin acyltransferase family VAA049_1359 PF03412 Peptidase C39 family VAA049_1359 PF00005 ABC transporter VAA049_1359 PF00664 ABC transporter transmembrane region VAA049_136 PF01177 Asp/Glu/Hydantoin racemase VAA049_1361 PF00664 ABC transporter transmembrane region VAA049_1361 PF00005 ABC transporter VAA049_1361 PF03412 Peptidase C39 family VAA049_1362 PF00072 Response regulator receiver domain VAA049_1362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1362 PF09308 LuxQ, periplasmic VAA049_1362 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1365 PF00115 Cytochrome C and Quinol oxidase polypeptide I VAA049_1368 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VAA049_1368 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VAA049_1370 PF00403 Heavy-metal-associated domain VAA049_1373 PF13545 Crp-like helix-turn-helix domain VAA049_1373 PF00027 Cyclic nucleotide-binding domain VAA049_1374 PF00582 Universal stress protein family VAA049_1375 PF01171 PP-loop family VAA049_1379 PF00005 ABC transporter VAA049_1379 PF08402 TOBE domain VAA049_1380 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1381 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1382 PF13416 Bacterial extracellular solute-binding protein VAA049_1383 PF13416 Bacterial extracellular solute-binding protein VAA049_1386 PF01235 Sodium:alanine symporter family VAA049_1387 PF01810 LysE type translocator VAA049_1391 PF16671 Actin cross-linking domain VAA049_1391 PF04717 Type VI secretion system, phage-baseplate injector VAA049_1392 PF05638 Type VI secretion system effector, Hcp VAA049_1393 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VAA049_1394 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1394 PF00672 HAMP domain VAA049_1394 PF02743 Cache domain VAA049_1395 PF07690 Major Facilitator Superfamily VAA049_1396 PF00529 HlyD membrane-fusion protein of T1SS VAA049_1396 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA049_1397 PF02321 Outer membrane efflux protein VAA049_1399 PF00270 DEAD/DEAH box helicase VAA049_1399 PF00271 Helicase conserved C-terminal domain VAA049_1400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1400 PF08447 PAS fold VAA049_1400 PF13426 PAS domain VAA049_1401 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1401 PF12729 Four helix bundle sensory module for signal transduction VAA049_1401 PF00672 HAMP domain VAA049_1402 PF00672 HAMP domain VAA049_1402 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1402 PF17202 Single cache domain 3 VAA049_1403 PF01584 CheW-like domain VAA049_1404 PF01339 CheB methylesterase VAA049_1404 PF00072 Response regulator receiver domain VAA049_1406 PF03705 CheR methyltransferase, all-alpha domain VAA049_1406 PF01739 CheR methyltransferase, SAM binding domain VAA049_1407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1407 PF01627 Hpt domain VAA049_1407 PF00072 Response regulator receiver domain VAA049_1407 PF01584 CheW-like domain VAA049_1408 PF07194 P2 response regulator binding domain VAA049_1408 PF01627 Hpt domain VAA049_1408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1408 PF02895 Signal transducing histidine kinase, homodimeric domain VAA049_1408 PF01584 CheW-like domain VAA049_1411 PF00672 HAMP domain VAA049_1411 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1412 PF00893 Small Multidrug Resistance protein VAA049_1413 PF03441 FAD binding domain of DNA photolyase VAA049_1413 PF00875 DNA photolyase VAA049_1414 PF07690 Major Facilitator Superfamily VAA049_1415 PF03466 LysR substrate binding domain VAA049_1415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1416 PF03099 Biotin/lipoate A/B protein ligase family VAA049_1416 PF10437 Bacterial lipoate protein ligase C-terminus VAA049_1417 PF00012 Hsp70 protein VAA049_1419 PF11898 Domain of unknown function (DUF3418) VAA049_1419 PF04408 Helicase associated domain (HA2) VAA049_1419 PF00271 Helicase conserved C-terminal domain VAA049_1419 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VAA049_1419 PF00270 DEAD/DEAH box helicase VAA049_1424 PF03707 Bacterial signalling protein N terminal repeat VAA049_1424 PF00563 EAL domain VAA049_1424 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1426 PF00012 Hsp70 protein VAA049_1427 PF00012 Hsp70 protein VAA049_1428 PF17158 Membrane-associated sensor, integral membrane domain VAA049_1428 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1430 PF03707 Bacterial signalling protein N terminal repeat VAA049_1430 PF00563 EAL domain VAA049_1430 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1433 PF06508 Queuosine biosynthesis protein QueC VAA049_1435 PF04055 Radical SAM superfamily VAA049_1438 PF14824 Sirohaem biosynthesis protein central VAA049_1438 PF10414 Sirohaem synthase dimerisation region VAA049_1438 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA049_1439 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_1440 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1441 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1442 PF00005 ABC transporter VAA049_1443 PF01027 Inhibitor of apoptosis-promoting Bax1 VAA049_1444 PF04358 DsrC like protein VAA049_1445 PF00708 Acylphosphatase VAA049_1446 PF17785 PUA-like domain VAA049_1446 PF10672 S-adenosylmethionine-dependent methyltransferase VAA049_1447 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1448 PF00462 Glutaredoxin VAA049_1448 PF08534 Redoxin VAA049_1449 PF01627 Hpt domain VAA049_1449 PF00672 HAMP domain VAA049_1449 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VAA049_1449 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1449 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1449 PF00072 Response regulator receiver domain VAA049_1450 PF02798 Glutathione S-transferase, N-terminal domain VAA049_1450 PF14497 Glutathione S-transferase, C-terminal domain VAA049_1451 PF00072 Response regulator receiver domain VAA049_1453 PF04209 homogentisate 1,2-dioxygenase VAA049_1454 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA049_1455 PF01546 Peptidase family M20/M25/M40 VAA049_1455 PF07687 Peptidase dimerisation domain VAA049_1458 PF16177 Acetyl-coenzyme A synthetase N-terminus VAA049_1458 PF00501 AMP-binding enzyme VAA049_1458 PF13193 AMP-binding enzyme C-terminal domain VAA049_1459 PF04303 PrpF protein VAA049_1460 PF00330 Aconitase family (aconitate hydratase) VAA049_1460 PF00694 Aconitase C-terminal domain VAA049_1461 PF00285 Citrate synthase, C-terminal domain VAA049_1463 PF00392 Bacterial regulatory proteins, gntR family VAA049_1463 PF07729 FCD domain VAA049_1466 PF01970 Tripartite tricarboxylate transporter TctA family VAA049_1469 PF02653 Branched-chain amino acid transport system / permease component VAA049_1470 PF00005 ABC transporter VAA049_1471 PF13407 Periplasmic binding protein domain VAA049_1475 PF00486 Transcriptional regulatory protein, C terminal VAA049_1475 PF00072 Response regulator receiver domain VAA049_1476 PF00672 HAMP domain VAA049_1476 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1476 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1477 PF06629 MltA-interacting protein MipA VAA049_1478 PF04393 Protein of unknown function (DUF535) VAA049_1479 PF02954 Bacterial regulatory protein, Fis family VAA049_1479 PF00158 Sigma-54 interaction domain VAA049_1479 PF00072 Response regulator receiver domain VAA049_1480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1480 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1480 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_1481 PF00939 Sodium:sulfate symporter transmembrane region VAA049_1482 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1482 PF00672 HAMP domain VAA049_1483 PF01168 Alanine racemase, N-terminal domain VAA049_1483 PF00842 Alanine racemase, C-terminal domain VAA049_1484 PF00892 EamA-like transporter family VAA049_1486 PF13302 Acetyltransferase (GNAT) domain VAA049_1487 PF18024 Helix-turn-helix domain VAA049_1487 PF00158 Sigma-54 interaction domain VAA049_1488 PF05128 Domain of unknown function (DUF697) VAA049_1489 PF04317 YcjX-like family, DUF463 VAA049_149 PF00962 Adenosine/AMP deaminase VAA049_1492 PF00425 chorismate binding enzyme VAA049_1492 PF04715 Anthranilate synthase component I, N terminal region VAA049_1493 PF00293 NUDIX domain VAA049_1494 PF03222 Tryptophan/tyrosine permease family VAA049_1495 PF03315 Serine dehydratase beta chain VAA049_1495 PF03313 Serine dehydratase alpha chain VAA049_1496 PF01242 6-pyruvoyl tetrahydropterin synthase VAA049_1497 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1497 PF00672 HAMP domain VAA049_1497 PF12729 Four helix bundle sensory module for signal transduction VAA049_1498 PF01336 OB-fold nucleic acid binding domain VAA049_1498 PF00152 tRNA synthetases class II (D, K and N) VAA049_1499 PF08543 Phosphomethylpyrimidine kinase VAA049_15 PF08240 Alcohol dehydrogenase GroES-like domain VAA049_15 PF00107 Zinc-binding dehydrogenase VAA049_150 PF00563 EAL domain VAA049_150 PF03707 Bacterial signalling protein N terminal repeat VAA049_150 PF13188 PAS domain VAA049_150 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1500 PF01966 HD domain VAA049_1500 PF00672 HAMP domain VAA049_1501 PF00155 Aminotransferase class I and II VAA049_1504 PF17200 Single Cache domain 2 VAA049_1504 PF00672 HAMP domain VAA049_1504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1505 PF04349 Periplasmic glucan biosynthesis protein, MdoG VAA049_1506 PF13506 Glycosyl transferase family 21 VAA049_1507 PF00356 Bacterial regulatory proteins, lacI family VAA049_1508 PF04794 YdjC-like protein VAA049_1509 PF02056 Family 4 glycosyl hydrolase VAA049_1509 PF11975 Family 4 glycosyl hydrolase C-terminal domain VAA049_151 PF02954 Bacterial regulatory protein, Fis family VAA049_151 PF00158 Sigma-54 interaction domain VAA049_151 PF00072 Response regulator receiver domain VAA049_1510 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VAA049_1511 PF02378 Phosphotransferase system, EIIC VAA049_1512 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA049_1513 PF01522 Polysaccharide deacetylase VAA049_1514 PF02028 BCCT, betaine/carnitine/choline family transporter VAA049_1515 PF01047 MarR family VAA049_1516 PF00196 Bacterial regulatory proteins, luxR family VAA049_1516 PF00072 Response regulator receiver domain VAA049_1517 PF17200 Single Cache domain 2 VAA049_1517 PF07730 Histidine kinase VAA049_1518 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VAA049_152 PF00989 PAS fold VAA049_152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_152 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1520 PF03480 Bacterial extracellular solute-binding protein, family 7 VAA049_1522 PF00753 Metallo-beta-lactamase superfamily VAA049_1524 PF05951 Bacterial protein of unknown function (DUF882) VAA049_1530 PF00925 GTP cyclohydrolase II VAA049_1532 PF07690 Major Facilitator Superfamily VAA049_1535 PF03989 DNA gyrase C-terminal domain, beta-propeller VAA049_1535 PF00521 DNA gyrase/topoisomerase IV, subunit A VAA049_1537 PF02867 Ribonucleotide reductase, barrel domain VAA049_1537 PF03477 ATP cone domain VAA049_1537 PF00317 Ribonucleotide reductase, all-alpha domain VAA049_1538 PF00268 Ribonucleotide reductase, small chain VAA049_1539 PF00175 Oxidoreductase NAD-binding domain VAA049_1539 PF00970 Oxidoreductase FAD-binding domain VAA049_1539 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA049_154 PF00120 Glutamine synthetase, catalytic domain VAA049_154 PF03951 Glutamine synthetase, beta-Grasp domain VAA049_1541 PF00994 Probable molybdopterin binding domain VAA049_1544 PF17200 Single Cache domain 2 VAA049_1544 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1544 PF00672 HAMP domain VAA049_1548 PF01966 HD domain VAA049_1553 PF13737 Transposase DDE domain VAA049_1572 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system VAA049_1573 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VAA049_158 PF03631 Virulence factor BrkB VAA049_1586 PF00583 Acetyltransferase (GNAT) family VAA049_159 PF02580 D-Tyr-tRNA(Tyr) deacylase VAA049_1591 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1591 PF00672 HAMP domain VAA049_1591 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1591 PF18698 Histidine kinase sensor domain VAA049_1594 PF00589 Phage integrase family VAA049_1594 PF13495 Phage integrase, N-terminal SAM-like domain VAA049_1595 PF00453 Ribosomal protein L20 VAA049_1596 PF01632 Ribosomal protein L35 VAA049_1597 PF05198 Translation initiation factor IF-3, N-terminal domain VAA049_1597 PF00707 Translation initiation factor IF-3, C-terminal domain VAA049_1598 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA049_1598 PF03129 Anticodon binding domain VAA049_1598 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VAA049_1598 PF02824 TGS domain VAA049_16 PF00291 Pyridoxal-phosphate dependent enzyme VAA049_16 PF00585 C-terminal regulatory domain of Threonine dehydratase VAA049_160 PF09500 Putative thioesterase (yiiD_Cterm) VAA049_160 PF00583 Acetyltransferase (GNAT) family VAA049_1609 PF04984 Phage tail sheath protein subtilisin-like domain VAA049_1609 PF17482 Phage tail sheath C-terminal domain VAA049_162 PF01293 Phosphoenolpyruvate carboxykinase VAA049_1627 PF00959 Phage lysozyme VAA049_163 PF01430 Hsp33 protein VAA049_1631 PF09669 Phage regulatory protein Rha (Phage_pRha) VAA049_1631 PF10549 ORF11CD3 domain VAA049_1639 PF00717 Peptidase S24-like VAA049_1639 PF01381 Helix-turn-helix VAA049_164 PF01479 S4 domain VAA049_1648 PF01571 Aminomethyltransferase folate-binding domain VAA049_1648 PF08669 Glycine cleavage T-protein C-terminal barrel domain VAA049_165 PF11356 Type II secretion system protein C VAA049_1650 PF00464 Serine hydroxymethyltransferase VAA049_1651 PF01597 Glycine cleavage H-protein VAA049_1652 PF02347 Glycine cleavage system P-protein VAA049_1653 PF00194 Eukaryotic-type carbonic anhydrase VAA049_1656 PF00768 D-alanyl-D-alanine carboxypeptidase VAA049_1656 PF07943 Penicillin-binding protein 5, C-terminal domain VAA049_1658 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1658 PF00672 HAMP domain VAA049_1658 PF02743 Cache domain VAA049_166 PF03958 Bacterial type II/III secretion system short domain VAA049_166 PF00263 Bacterial type II and III secretion system protein VAA049_1665 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1665 PF00672 HAMP domain VAA049_1666 PF00486 Transcriptional regulatory protein, C terminal VAA049_1666 PF00072 Response regulator receiver domain VAA049_167 PF00437 Type II/IV secretion system protein VAA049_1671 PF00128 Alpha amylase, catalytic domain VAA049_1674 PF08220 DeoR-like helix-turn-helix domain VAA049_1674 PF00455 DeoR C terminal sensor domain VAA049_1675 PF03611 PTS system sugar-specific permease component VAA049_1676 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA049_1677 PF00596 Class II Aldolase and Adducin N-terminal domain VAA049_1679 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA049_168 PF00482 Type II secretion system (T2SS), protein F VAA049_1680 PF01261 Xylose isomerase-like TIM barrel VAA049_1682 PF00072 Response regulator receiver domain VAA049_1682 PF00486 Transcriptional regulatory protein, C terminal VAA049_1683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1683 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1683 PF00672 HAMP domain VAA049_1686 PF00871 Acetokinase family VAA049_1688 PF07715 TonB-dependent Receptor Plug Domain VAA049_1688 PF00593 TonB dependent receptor VAA049_1689 PF12833 Helix-turn-helix domain VAA049_169 PF07963 Prokaryotic N-terminal methylation motif VAA049_169 PF08334 Type II secretion system (T2SS), protein G VAA049_1690 PF00005 ABC transporter VAA049_1691 PF01032 FecCD transport family VAA049_1692 PF01032 FecCD transport family VAA049_1696 PF13737 Transposase DDE domain VAA049_1698 PF00801 PKD domain VAA049_1698 PF05547 Immune inhibitor A peptidase M6 VAA049_1699 PF03280 Proteobacterial lipase chaperone protein VAA049_17 PF00920 Dehydratase family VAA049_170 PF12019 Type II transport protein GspH VAA049_1700 PF00561 alpha/beta hydrolase fold VAA049_1701 PF00672 HAMP domain VAA049_1701 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1701 PF12729 Four helix bundle sensory module for signal transduction VAA049_1702 PF16458 Beta-prism lectin VAA049_1702 PF12563 Hemolytic toxin N terminal VAA049_1702 PF07968 Leukocidin/Hemolysin toxin family VAA049_1703 PF00657 GDSL-like Lipase/Acylhydrolase VAA049_1705 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1705 PF05230 MASE2 domain VAA049_1706 PF07690 Major Facilitator Superfamily VAA049_1707 PF03553 Na+/H+ antiporter family VAA049_1709 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_1709 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1709 PF00512 His Kinase A (phospho-acceptor) domain VAA049_171 PF02501 Type II secretion system (T2SS), protein I VAA049_171 PF07963 Prokaryotic N-terminal methylation motif VAA049_1710 PF11849 Domain of unknown function (DUF3369) VAA049_1711 PF01467 Cytidylyltransferase-like VAA049_1712 PF02540 NAD synthase VAA049_1713 PF03605 Anaerobic c4-dicarboxylate membrane transporter VAA049_1714 PF00271 Helicase conserved C-terminal domain VAA049_1714 PF00270 DEAD/DEAH box helicase VAA049_1717 PF13737 Transposase DDE domain VAA049_172 PF07963 Prokaryotic N-terminal methylation motif VAA049_172 PF11612 Type II secretion system (T2SS), protein J VAA049_1720 PF01555 DNA methylase VAA049_1721 PF00478 IMP dehydrogenase / GMP reductase domain VAA049_1723 PF07885 Ion channel VAA049_1725 PF03853 YjeF-related protein N-terminus VAA049_1725 PF01256 Carbohydrate kinase VAA049_1726 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA049_1726 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA049_1728 PF00072 Response regulator receiver domain VAA049_173 PF03934 Type II secretion system (T2SS), protein K VAA049_1731 PF03889 Alternative ribosome-rescue factor A VAA049_1732 PF00313 'Cold-shock' DNA-binding domain VAA049_1733 PF00175 Oxidoreductase NAD-binding domain VAA049_1733 PF00042 Globin VAA049_1733 PF00970 Oxidoreductase FAD-binding domain VAA049_1735 PF01590 GAF domain VAA049_1735 PF00158 Sigma-54 interaction domain VAA049_1736 PF07687 Peptidase dimerisation domain VAA049_1736 PF01546 Peptidase family M20/M25/M40 VAA049_1737 PF07670 Nucleoside recognition VAA049_1737 PF07662 Na+ dependent nucleoside transporter C-terminus VAA049_1737 PF01773 Na+ dependent nucleoside transporter N-terminus VAA049_174 PF12693 GspL periplasmic domain VAA049_174 PF05134 Type II secretion system (T2SS), protein L VAA049_1740 PF00672 HAMP domain VAA049_1740 PF02743 Cache domain VAA049_1740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1741 PF07726 ATPase family associated with various cellular activities (AAA) VAA049_1741 PF17863 AAA lid domain VAA049_1742 PF01882 Protein of unknown function DUF58 VAA049_1745 PF13519 von Willebrand factor type A domain VAA049_1745 PF07584 Aerotolerance regulator N-terminal VAA049_1748 PF00313 'Cold-shock' DNA-binding domain VAA049_1749 PF00563 EAL domain VAA049_1749 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1749 PF08448 PAS fold VAA049_175 PF04612 Type II secretion system (T2SS), protein M VAA049_1751 PF12843 Putative quorum-sensing-regulated virulence factor VAA049_1753 PF01212 Beta-eliminating lyase VAA049_1754 PF03222 Tryptophan/tyrosine permease family VAA049_1755 PF00582 Universal stress protein family VAA049_1757 PF00361 Proton-conducting membrane transporter VAA049_1757 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VAA049_1757 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter VAA049_1757 PF13244 Domain of unknown function (DUF4040) VAA049_176 PF01203 Type II secretion system (T2SS), protein N VAA049_1761 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VAA049_1762 PF03334 Na+/H+ antiporter subunit VAA049_1764 PF01327 Polypeptide deformylase VAA049_1765 PF00041 Fibronectin type III domain VAA049_1765 PF12561 ToxR activated gene A lipoprotein domain VAA049_1766 PF01266 FAD dependent oxidoreductase VAA049_1769 PF00072 Response regulator receiver domain VAA049_1769 PF02954 Bacterial regulatory protein, Fis family VAA049_1769 PF00158 Sigma-54 interaction domain VAA049_177 PF00459 Inositol monophosphatase family VAA049_1770 PF02743 Cache domain VAA049_1770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1770 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1773 PF07690 Major Facilitator Superfamily VAA049_1774 PF03009 Glycerophosphoryl diester phosphodiesterase family VAA049_1776 PF13426 PAS domain VAA049_1776 PF08448 PAS fold VAA049_1776 PF08447 PAS fold VAA049_1776 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1776 PF05231 MASE1 VAA049_1776 PF00563 EAL domain VAA049_1777 PF00356 Bacterial regulatory proteins, lacI family VAA049_1778 PF00294 pfkB family carbohydrate kinase VAA049_1779 PF13407 Periplasmic binding protein domain VAA049_178 PF00293 NUDIX domain VAA049_1780 PF02653 Branched-chain amino acid transport system / permease component VAA049_1781 PF00005 ABC transporter VAA049_1782 PF05025 RbsD / FucU transport protein family VAA049_1786 PF04717 Type VI secretion system, phage-baseplate injector VAA049_1786 PF16671 Actin cross-linking domain VAA049_179 PF01106 NifU-like domain VAA049_179 PF01521 Iron-sulphur cluster biosynthesis VAA049_1792 PF17871 AAA lid domain VAA049_1792 PF07724 AAA domain (Cdc48 subfamily) VAA049_1792 PF00004 ATPase family associated with various cellular activities (AAA) VAA049_1792 PF10431 C-terminal, D2-small domain, of ClpB protein VAA049_18 PF01063 Amino-transferase class IV VAA049_180 PF00156 Phosphoribosyl transferase domain VAA049_1804 PF00849 RNA pseudouridylate synthase VAA049_1805 PF00916 Sulfate permease family VAA049_1805 PF01740 STAS domain VAA049_1806 PF13419 Haloacid dehalogenase-like hydrolase VAA049_1807 PF00196 Bacterial regulatory proteins, luxR family VAA049_1807 PF00563 EAL domain VAA049_1808 PF00581 Rhodanese-like domain VAA049_1809 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA049_1809 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VAA049_181 PF00561 alpha/beta hydrolase fold VAA049_1810 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VAA049_1810 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VAA049_1812 PF01447 Thermolysin metallopeptidase, catalytic domain VAA049_1812 PF01483 Proprotein convertase P-domain VAA049_1812 PF02868 Thermolysin metallopeptidase, alpha-helical domain VAA049_1812 PF07504 Fungalysin/Thermolysin Propeptide Motif VAA049_1816 PF02001 Protein of unknown function DUF134 VAA049_1818 PF00375 Sodium:dicarboxylate symporter family VAA049_1822 PF09278 MerR, DNA binding VAA049_1822 PF00376 MerR family regulatory protein VAA049_1823 PF07690 Major Facilitator Superfamily VAA049_1824 PF03466 LysR substrate binding domain VAA049_1824 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1826 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1826 PF13188 PAS domain VAA049_1826 PF00563 EAL domain VAA049_1826 PF03707 Bacterial signalling protein N terminal repeat VAA049_1827 PF01476 LysM domain VAA049_1827 PF08525 Opacity-associated protein A N-terminal motif VAA049_1827 PF01551 Peptidase family M23 VAA049_1829 PF01740 STAS domain VAA049_1829 PF00916 Sulfate permease family VAA049_183 PF16921 Tex protein YqgF-like domain VAA049_183 PF09371 Tex-like protein N-terminal domain VAA049_183 PF00575 S1 RNA binding domain VAA049_183 PF17674 HHH domain VAA049_1832 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1832 PF00563 EAL domain VAA049_1832 PF03707 Bacterial signalling protein N terminal repeat VAA049_1833 PF00005 ABC transporter VAA049_1834 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1835 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1836 PF12849 PBP superfamily domain VAA049_1837 PF00672 HAMP domain VAA049_1837 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1837 PF12729 Four helix bundle sensory module for signal transduction VAA049_184 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA049_184 PF03449 Transcription elongation factor, N-terminal VAA049_1841 PF00593 TonB dependent receptor VAA049_1841 PF07715 TonB-dependent Receptor Plug Domain VAA049_1842 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VAA049_1842 PF00326 Prolyl oligopeptidase family VAA049_1843 PF00270 DEAD/DEAH box helicase VAA049_1843 PF00271 Helicase conserved C-terminal domain VAA049_1845 PF01476 LysM domain VAA049_1845 PF17969 L,D-transpeptidase C-terminal domain VAA049_1845 PF03734 L,D-transpeptidase catalytic domain VAA049_1846 PF00875 DNA photolyase VAA049_1846 PF03441 FAD binding domain of DNA photolyase VAA049_1847 PF13411 MerR HTH family regulatory protein VAA049_1848 PF08349 Protein of unknown function (DUF1722) VAA049_1849 PF01048 Phosphorylase superfamily VAA049_1852 PF00990 Diguanylate cyclase, GGDEF domain VAA049_1853 PF11742 Protein of unknown function (DUF3302) VAA049_1854 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA049_1854 PF00529 HlyD membrane-fusion protein of T1SS VAA049_1857 PF12945 Flagellar protein YcgR VAA049_1857 PF07238 PilZ domain VAA049_1858 PF03616 Sodium/glutamate symporter VAA049_1861 PF02630 SCO1/SenC VAA049_1863 PF00375 Sodium:dicarboxylate symporter family VAA049_1864 PF01569 PAP2 superfamily VAA049_1868 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1868 PF00672 HAMP domain VAA049_1868 PF02743 Cache domain VAA049_187 PF00005 ABC transporter VAA049_1871 PF00704 Glycosyl hydrolases family 18 VAA049_1871 PF08329 Chitinase A, N-terminal domain VAA049_1872 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VAA049_1873 PF00939 Sodium:sulfate symporter transmembrane region VAA049_1875 PF00842 Alanine racemase, C-terminal domain VAA049_1875 PF01757 Acyltransferase family VAA049_1875 PF01168 Alanine racemase, N-terminal domain VAA049_188 PF02653 Branched-chain amino acid transport system / permease component VAA049_1880 PF16671 Actin cross-linking domain VAA049_1880 PF04717 Type VI secretion system, phage-baseplate injector VAA049_1881 PF05638 Type VI secretion system effector, Hcp VAA049_1882 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA049_1882 PF02806 Alpha amylase, C-terminal all-beta domain VAA049_1882 PF00128 Alpha amylase, catalytic domain VAA049_1883 PF02446 4-alpha-glucanotransferase VAA049_1884 PF00343 Carbohydrate phosphorylase VAA049_1885 PF17874 MalT-like TPR region VAA049_1885 PF00196 Bacterial regulatory proteins, luxR family VAA049_1886 PF10928 Protein of unknown function (DUF2810) VAA049_1887 PF17200 Single Cache domain 2 VAA049_1887 PF00672 HAMP domain VAA049_1887 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1888 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VAA049_1888 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VAA049_1889 PF01709 Transcriptional regulator VAA049_189 PF00933 Glycosyl hydrolase family 3 N terminal domain VAA049_189 PF01915 Glycosyl hydrolase family 3 C-terminal domain VAA049_1894 PF18607 ParA helix turn helix domain VAA049_1894 PF13614 AAA domain VAA049_1895 PF02195 ParB-like nuclease domain VAA049_1895 PF08775 ParB family VAA049_1896 PF13416 Bacterial extracellular solute-binding protein VAA049_1897 PF05127 Helicase VAA049_1897 PF13718 GNAT acetyltransferase 2 VAA049_1899 PF00501 AMP-binding enzyme VAA049_190 PF08329 Chitinase A, N-terminal domain VAA049_190 PF00704 Glycosyl hydrolases family 18 VAA049_1901 PF00106 short chain dehydrogenase VAA049_1903 PF00072 Response regulator receiver domain VAA049_1903 PF00486 Transcriptional regulatory protein, C terminal VAA049_1904 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1904 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1904 PF08521 Two-component sensor kinase N-terminal VAA049_1905 PF00884 Sulfatase VAA049_1905 PF08019 Phosphoethanolamine transferase EptA/EptB VAA049_1906 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA049_1906 PF00005 ABC transporter VAA049_1907 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1907 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA049_1908 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_191 PF14706 Transposase DNA-binding VAA049_191 PF01609 Transposase DDE domain VAA049_191 PF02281 Transposase Tn5 dimerisation domain VAA049_1911 PF00072 Response regulator receiver domain VAA049_1912 PF01627 Hpt domain VAA049_1912 PF01584 CheW-like domain VAA049_1912 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1912 PF02895 Signal transducing histidine kinase, homodimeric domain VAA049_1912 PF09078 CheY binding VAA049_1913 PF01584 CheW-like domain VAA049_1914 PF01584 CheW-like domain VAA049_1915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1915 PF00672 HAMP domain VAA049_1915 PF02203 Tar ligand binding domain homologue VAA049_1916 PF01739 CheR methyltransferase, SAM binding domain VAA049_1916 PF03705 CheR methyltransferase, all-alpha domain VAA049_1917 PF03975 CheD chemotactic sensory transduction VAA049_1918 PF01339 CheB methylesterase VAA049_1918 PF00072 Response regulator receiver domain VAA049_1919 PF02743 Cache domain VAA049_1919 PF00672 HAMP domain VAA049_1919 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_192 PF00486 Transcriptional regulatory protein, C terminal VAA049_192 PF00072 Response regulator receiver domain VAA049_1921 PF00072 Response regulator receiver domain VAA049_1921 PF00486 Transcriptional regulatory protein, C terminal VAA049_1923 PF00664 ABC transporter transmembrane region VAA049_1923 PF00005 ABC transporter VAA049_1923 PF03412 Peptidase C39 family VAA049_1926 PF00529 HlyD membrane-fusion protein of T1SS VAA049_1927 PF01243 Pyridoxamine 5'-phosphate oxidase VAA049_1927 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VAA049_1928 PF00072 Response regulator receiver domain VAA049_1928 PF00196 Bacterial regulatory proteins, luxR family VAA049_1929 PF03781 Sulfatase-modifying factor enzyme 1 VAA049_193 PF00672 HAMP domain VAA049_193 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_193 PF00512 His Kinase A (phospho-acceptor) domain VAA049_1931 PF12833 Helix-turn-helix domain VAA049_1932 PF14850 DNA-binding domain of Proline dehydrogenase VAA049_1932 PF01619 Proline dehydrogenase VAA049_1932 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VAA049_1932 PF00171 Aldehyde dehydrogenase family VAA049_1934 PF00474 Sodium:solute symporter family VAA049_1936 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1936 PF00672 HAMP domain VAA049_1936 PF02743 Cache domain VAA049_1937 PF01037 Lrp/AsnC ligand binding domain VAA049_1938 PF00171 Aldehyde dehydrogenase family VAA049_1939 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VAA049_1939 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VAA049_1939 PF01276 Orn/Lys/Arg decarboxylase, major domain VAA049_194 PF00860 Permease family VAA049_1940 PF13520 Amino acid permease VAA049_1941 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VAA049_1942 PF04013 Putative SAM-dependent RNA methyltransferase VAA049_1943 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1943 PF03466 LysR substrate binding domain VAA049_1944 PF00106 short chain dehydrogenase VAA049_1945 PF02743 Cache domain VAA049_1945 PF00672 HAMP domain VAA049_1945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1946 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1946 PF03466 LysR substrate binding domain VAA049_1947 PF13460 NAD(P)H-binding VAA049_1949 PF00857 Isochorismatase family VAA049_195 PF00271 Helicase conserved C-terminal domain VAA049_195 PF00270 DEAD/DEAH box helicase VAA049_195 PF17191 RecG wedge domain VAA049_1952 PF00892 EamA-like transporter family VAA049_1956 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA049_1957 PF05068 Mannitol repressor VAA049_1958 PF01232 Mannitol dehydrogenase Rossmann domain VAA049_1958 PF08125 Mannitol dehydrogenase C-terminal domain VAA049_1959 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA049_1959 PF02378 Phosphotransferase system, EIIC VAA049_1959 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA049_196 PF04607 Region found in RelA / SpoT proteins VAA049_196 PF02824 TGS domain VAA049_196 PF13291 ACT domain VAA049_1960 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA049_1960 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA049_1960 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA049_1960 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA049_1961 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1962 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_1963 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_1964 PF00005 ABC transporter VAA049_1965 PF00793 DAHP synthetase I family VAA049_1967 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1967 PF00672 HAMP domain VAA049_197 PF01192 RNA polymerase Rpb6 VAA049_1970 PF12729 Four helix bundle sensory module for signal transduction VAA049_1970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_1970 PF00672 HAMP domain VAA049_1972 PF00128 Alpha amylase, catalytic domain VAA049_1972 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA049_1973 PF02264 LamB porin VAA049_1974 PF07148 Maltose operon periplasmic protein precursor (MalM) VAA049_1976 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VAA049_198 PF00625 Guanylate kinase VAA049_1980 PF03466 LysR substrate binding domain VAA049_1980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_1981 PF07681 DoxX VAA049_1982 PF00730 HhH-GPD superfamily base excision DNA repair protein VAA049_1982 PF06029 AlkA N-terminal domain VAA049_1983 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VAA049_1983 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VAA049_1985 PF00939 Sodium:sulfate symporter transmembrane region VAA049_1986 PF17203 Single cache domain 3 VAA049_1986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_1987 PF03600 Citrate transporter VAA049_1988 PF00072 Response regulator receiver domain VAA049_1988 PF12431 Transcriptional regulator VAA049_1989 PF07670 Nucleoside recognition VAA049_199 PF02592 Putative vitamin uptake transporter VAA049_1990 PF07670 Nucleoside recognition VAA049_1991 PF00462 Glutaredoxin VAA049_1992 PF00892 EamA-like transporter family VAA049_1993 PF13609 Gram-negative porin VAA049_1994 PF02566 OsmC-like protein VAA049_1995 PF01047 MarR family VAA049_1996 PF01557 Fumarylacetoacetate (FAA) hydrolase family VAA049_1999 PF12833 Helix-turn-helix domain VAA049_2 PF02767 DNA polymerase III beta subunit, central domain VAA049_2 PF00712 DNA polymerase III beta subunit, N-terminal domain VAA049_2 PF02768 DNA polymerase III beta subunit, C-terminal domain VAA049_20 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA049_20 PF00205 Thiamine pyrophosphate enzyme, central domain VAA049_20 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA049_200 PF00474 Sodium:solute symporter family VAA049_2000 PF01810 LysE type translocator VAA049_2002 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VAA049_2004 PF00005 ABC transporter VAA049_2004 PF00664 ABC transporter transmembrane region VAA049_2006 PF00271 Helicase conserved C-terminal domain VAA049_2006 PF00270 DEAD/DEAH box helicase VAA049_2007 PF01554 MatE VAA049_2008 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_2008 PF08447 PAS fold VAA049_2009 PF00391 PEP-utilising enzyme, mobile domain VAA049_2009 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VAA049_2009 PF02896 PEP-utilising enzyme, TIM barrel domain VAA049_2010 PF03618 Kinase/pyrophosphorylase VAA049_2012 PF01070 FMN-dependent dehydrogenase VAA049_2013 PF02652 L-lactate permease VAA049_2014 PF03466 LysR substrate binding domain VAA049_2014 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2016 PF00672 HAMP domain VAA049_2016 PF17200 Single Cache domain 2 VAA049_2016 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_2017 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_2018 PF00005 ABC transporter VAA049_2018 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA049_202 PF03471 Transporter associated domain VAA049_202 PF00999 Sodium/hydrogen exchanger family VAA049_202 PF02080 TrkA-C domain VAA049_2020 PF13654 AAA domain VAA049_2020 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA049_2021 PF00672 HAMP domain VAA049_2021 PF17200 Single Cache domain 2 VAA049_2021 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_2023 PF07690 Major Facilitator Superfamily VAA049_2025 PF06865 Pyrimidine/purine nucleoside phosphorylase VAA049_2026 PF05726 Pirin C-terminal cupin domain VAA049_2026 PF02678 Pirin VAA049_2028 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2028 PF00563 EAL domain VAA049_2029 PF03466 LysR substrate binding domain VAA049_2029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_203 PF00196 Bacterial regulatory proteins, luxR family VAA049_203 PF00072 Response regulator receiver domain VAA049_2033 PF00563 EAL domain VAA049_2033 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2033 PF03707 Bacterial signalling protein N terminal repeat VAA049_2036 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2037 PF01047 MarR family VAA049_2038 PF01584 CheW-like domain VAA049_2038 PF00072 Response regulator receiver domain VAA049_204 PF11412 Disulphide bond corrector protein DsbC VAA049_204 PF02683 Cytochrome C biogenesis protein transmembrane region VAA049_2040 PF00196 Bacterial regulatory proteins, luxR family VAA049_2041 PF01906 Putative heavy-metal-binding VAA049_2044 PF13302 Acetyltransferase (GNAT) domain VAA049_2045 PF08402 TOBE domain VAA049_2045 PF00005 ABC transporter VAA049_2046 PF01547 Bacterial extracellular solute-binding protein VAA049_2047 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2047 PF14785 Maltose transport system permease protein MalF P2 domain VAA049_2048 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_205 PF18494 Pullulanase Ins domain VAA049_205 PF03714 Bacterial pullanase-associated domain VAA049_205 PF11852 Domain of unknown function (DUF3372) VAA049_205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VAA049_205 PF17967 Pullulanase N2 domain VAA049_2051 PF08220 DeoR-like helix-turn-helix domain VAA049_2051 PF00455 DeoR C terminal sensor domain VAA049_2052 PF08448 PAS fold VAA049_2052 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2057 PF00313 'Cold-shock' DNA-binding domain VAA049_206 PF03605 Anaerobic c4-dicarboxylate membrane transporter VAA049_2060 PF05661 Protein of unknown function (DUF808) VAA049_2061 PF05958 tRNA (Uracil-5-)-methyltransferase VAA049_2063 PF05656 Protein of unknown function (DUF805) VAA049_2065 PF01979 Amidohydrolase family VAA049_2066 PF03473 MOSC domain VAA049_2066 PF03476 MOSC N-terminal beta barrel domain VAA049_2066 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA049_2066 PF03476 MOSC N-terminal beta barrel domain VAA049_2066 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA049_2066 PF03473 MOSC domain VAA049_2067 PF00672 HAMP domain VAA049_2067 PF02743 Cache domain VAA049_2067 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_207 PF10415 Fumarase C C-terminus VAA049_207 PF00206 Lyase VAA049_2073 PF00005 ABC transporter VAA049_2074 PF01032 FecCD transport family VAA049_2075 PF01497 Periplasmic binding protein VAA049_2076 PF02472 Biopolymer transport protein ExbD/TolR VAA049_2077 PF01618 MotA/TolQ/ExbB proton channel family VAA049_2078 PF03544 Gram-negative bacterial TonB protein C-terminal VAA049_2079 PF04055 Radical SAM superfamily VAA049_208 PF00990 Diguanylate cyclase, GGDEF domain VAA049_208 PF17158 Membrane-associated sensor, integral membrane domain VAA049_2080 PF06228 Haem utilisation ChuX/HutX VAA049_2081 PF01243 Pyridoxamine 5'-phosphate oxidase VAA049_2082 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_2082 PF00672 HAMP domain VAA049_2083 PF05651 Putative sugar diacid recognition VAA049_2083 PF17853 GGDEF-like domain VAA049_2083 PF13556 PucR C-terminal helix-turn-helix domain VAA049_2084 PF02447 GntP family permease VAA049_2085 PF02595 Glycerate kinase family VAA049_209 PF04186 FxsA cytoplasmic membrane protein VAA049_2090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VAA049_2090 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VAA049_2091 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VAA049_2092 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VAA049_2092 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VAA049_2093 PF01966 HD domain VAA049_2098 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA049_2099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2099 PF03466 LysR substrate binding domain VAA049_21 PF01078 Magnesium chelatase, subunit ChlI VAA049_21 PF13335 Magnesium chelatase, subunit ChlI C-terminal VAA049_210 PF00588 SpoU rRNA Methylase family VAA049_2100 PF01053 Cys/Met metabolism PLP-dependent enzyme VAA049_2101 PF00155 Aminotransferase class I and II VAA049_2102 PF00107 Zinc-binding dehydrogenase VAA049_2102 PF08240 Alcohol dehydrogenase GroES-like domain VAA049_2109 PF13737 Transposase DDE domain VAA049_211 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VAA049_211 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VAA049_2110 PF01609 Transposase DDE domain VAA049_2110 PF02281 Transposase Tn5 dimerisation domain VAA049_2110 PF14706 Transposase DNA-binding VAA049_2112 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2112 PF03466 LysR substrate binding domain VAA049_2113 PF00291 Pyridoxal-phosphate dependent enzyme VAA049_2116 PF02322 Cytochrome bd terminal oxidase subunit II VAA049_2117 PF01654 Cytochrome bd terminal oxidase subunit I VAA049_2118 PF00155 Aminotransferase class I and II VAA049_2118 PF00392 Bacterial regulatory proteins, gntR family VAA049_2119 PF00768 D-alanyl-D-alanine carboxypeptidase VAA049_212 PF16527 Two-component sensor protein CpxA, periplasmic domain VAA049_212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_212 PF00672 HAMP domain VAA049_212 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2122 PF03922 OmpW family VAA049_2123 PF03413 Peptidase propeptide and YPEB domain VAA049_2123 PF01447 Thermolysin metallopeptidase, catalytic domain VAA049_2123 PF02868 Thermolysin metallopeptidase, alpha-helical domain VAA049_2123 PF04151 Bacterial pre-peptidase C-terminal domain VAA049_2123 PF07504 Fungalysin/Thermolysin Propeptide Motif VAA049_2124 PF13426 PAS domain VAA049_2124 PF08447 PAS fold VAA049_2124 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_2125 PF12262 Bacterial virulence factor lipase N-terminal VAA049_2126 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA049_2127 PF00128 Alpha amylase, catalytic domain VAA049_2128 PF00248 Aldo/keto reductase family VAA049_213 PF00072 Response regulator receiver domain VAA049_213 PF00486 Transcriptional regulatory protein, C terminal VAA049_2130 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2131 PF13520 Amino acid permease VAA049_2134 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA049_2134 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA049_2135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA049_2136 PF02566 OsmC-like protein VAA049_2137 PF03471 Transporter associated domain VAA049_2137 PF00571 CBS domain VAA049_2137 PF01595 Cyclin M transmembrane N-terminal domain VAA049_2138 PF14602 Hexapeptide repeat of succinyl-transferase VAA049_2138 PF00132 Bacterial transferase hexapeptide (six repeats) VAA049_2138 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VAA049_2139 PF00892 EamA-like transporter family VAA049_2141 PF03466 LysR substrate binding domain VAA049_2141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2145 PF13193 AMP-binding enzyme C-terminal domain VAA049_2145 PF00501 AMP-binding enzyme VAA049_2146 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VAA049_2147 PF01329 Pterin 4 alpha carbinolamine dehydratase VAA049_2148 PF00583 Acetyltransferase (GNAT) family VAA049_2149 PF00202 Aminotransferase class-III VAA049_215 PF16916 Dimerisation domain of Zinc Transporter VAA049_215 PF01545 Cation efflux family VAA049_2150 PF06339 Ectoine synthase VAA049_2151 PF00696 Amino acid kinase family VAA049_2151 PF13840 ACT domain VAA049_2153 PF00118 TCP-1/cpn60 chaperonin family VAA049_2154 PF00166 Chaperonin 10 Kd subunit VAA049_2155 PF01769 Divalent cation transporter VAA049_2155 PF03448 MgtE intracellular N domain VAA049_2155 PF00571 CBS domain VAA049_2157 PF17944 Arginine decarboxylase C-terminal helical extension VAA049_2157 PF17810 Arginine decarboxylase helical bundle domain VAA049_2157 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VAA049_2158 PF00491 Arginase family VAA049_2159 PF04389 Peptidase family M28 VAA049_2159 PF04151 Bacterial pre-peptidase C-terminal domain VAA049_216 PF00365 Phosphofructokinase VAA049_2160 PF04151 Bacterial pre-peptidase C-terminal domain VAA049_2160 PF07504 Fungalysin/Thermolysin Propeptide Motif VAA049_2160 PF03413 Peptidase propeptide and YPEB domain VAA049_2160 PF02868 Thermolysin metallopeptidase, alpha-helical domain VAA049_2160 PF01447 Thermolysin metallopeptidase, catalytic domain VAA049_2161 PF18416 N-acetylglucosamine binding protein domain 2 VAA049_2161 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VAA049_2162 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VAA049_2163 PF01575 MaoC like domain VAA049_2164 PF12849 PBP superfamily domain VAA049_2166 PF08206 Ribonuclease B OB domain VAA049_2166 PF00773 RNB domain VAA049_2166 PF00575 S1 RNA binding domain VAA049_2167 PF00270 DEAD/DEAH box helicase VAA049_2167 PF00271 Helicase conserved C-terminal domain VAA049_2167 PF03880 DbpA RNA binding domain VAA049_2169 PF00884 Sulfatase VAA049_217 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VAA049_2170 PF00294 pfkB family carbohydrate kinase VAA049_2173 PF13419 Haloacid dehalogenase-like hydrolase VAA049_2177 PF00684 DnaJ central domain VAA049_2177 PF01556 DnaJ C terminal domain VAA049_2177 PF00226 DnaJ domain VAA049_2179 PF00498 FHA domain VAA049_2179 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2179 PF00563 EAL domain VAA049_218 PF06005 Cell division protein ZapB VAA049_2180 PF12241 Trans-2-enoyl-CoA reductase catalytic region VAA049_2180 PF07055 Enoyl reductase FAD binding domain VAA049_2180 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VAA049_2181 PF13472 GDSL-like Lipase/Acylhydrolase family VAA049_2182 PF00005 ABC transporter VAA049_2184 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VAA049_2184 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VAA049_2186 PF02626 Carboxyltransferase domain, subdomain A and B VAA049_2188 PF03746 LamB/YcsF family VAA049_2189 PF16363 GDP-mannose 4,6 dehydratase VAA049_219 PF02219 Methylenetetrahydrofolate reductase VAA049_2190 PF12729 Four helix bundle sensory module for signal transduction VAA049_2190 PF00672 HAMP domain VAA049_2190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_2191 PF03222 Tryptophan/tyrosine permease family VAA049_2193 PF04336 Acyl carrier protein phosphodiesterase VAA049_2194 PF00270 DEAD/DEAH box helicase VAA049_2194 PF00271 Helicase conserved C-terminal domain VAA049_2195 PF00440 Bacterial regulatory proteins, tetR family VAA049_2195 PF08361 MAATS-type transcriptional repressor, C-terminal region VAA049_2196 PF00034 Cytochrome c VAA049_2197 PF01212 Beta-eliminating lyase VAA049_2198 PF00293 NUDIX domain VAA049_2199 PF17868 AAA lid domain VAA049_2199 PF07728 AAA domain (dynein-related subfamily) VAA049_2199 PF12592 Protein of unknown function (DUF3763) VAA049_22 PF01553 Acyltransferase VAA049_220 PF00742 Homoserine dehydrogenase VAA049_220 PF00696 Amino acid kinase family VAA049_220 PF03447 Homoserine dehydrogenase, NAD binding domain VAA049_2200 PF05762 VWA domain containing CoxE-like protein VAA049_2202 PF00005 ABC transporter VAA049_2203 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_2204 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2205 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2206 PF03466 LysR substrate binding domain VAA049_2206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_221 PF01053 Cys/Met metabolism PLP-dependent enzyme VAA049_2211 PF07690 Major Facilitator Superfamily VAA049_2212 PF00085 Thioredoxin VAA049_2213 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VAA049_2213 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VAA049_2214 PF13183 4Fe-4S dicluster domain VAA049_2214 PF02754 Cysteine-rich domain VAA049_2215 PF00890 FAD binding domain VAA049_2216 PF04324 BFD-like [2Fe-2S] binding domain VAA049_2216 PF01266 FAD dependent oxidoreductase VAA049_2217 PF13407 Periplasmic binding protein domain VAA049_2219 PF00072 Response regulator receiver domain VAA049_2219 PF09308 LuxQ, periplasmic VAA049_2219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2219 PF00512 His Kinase A (phospho-acceptor) domain VAA049_222 PF01340 Met Apo-repressor, MetJ VAA049_2224 PF07685 CobB/CobQ-like glutamine amidotransferase domain VAA049_2224 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VAA049_2226 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2227 PF00005 ABC transporter VAA049_2227 PF03459 TOBE domain VAA049_223 PF00390 Malic enzyme, N-terminal domain VAA049_223 PF03949 Malic enzyme, NAD binding domain VAA049_2232 PF13188 PAS domain VAA049_2232 PF08448 PAS fold VAA049_2232 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2232 PF00072 Response regulator receiver domain VAA049_2232 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2233 PF12805 FUSC-like inner membrane protein yccS VAA049_2234 PF13361 UvrD-like helicase C-terminal domain VAA049_2234 PF12462 DNA helicase IV / RNA helicase N terminal VAA049_2234 PF00580 UvrD/REP helicase N-terminal domain VAA049_2237 PF01219 Prokaryotic diacylglycerol kinase VAA049_2238 PF00857 Isochorismatase family VAA049_2239 PF02142 MGS-like domain VAA049_224 PF01197 Ribosomal protein L31 VAA049_2240 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA049_2241 PF00672 HAMP domain VAA049_2241 PF00072 Response regulator receiver domain VAA049_2241 PF01627 Hpt domain VAA049_2241 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2241 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2242 PF00224 Pyruvate kinase, barrel domain VAA049_2242 PF02887 Pyruvate kinase, alpha/beta domain VAA049_2243 PF07690 Major Facilitator Superfamily VAA049_2246 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2246 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2246 PF02743 Cache domain VAA049_2248 PF14532 Sigma-54 interaction domain VAA049_2248 PF00072 Response regulator receiver domain VAA049_2248 PF02954 Bacterial regulatory protein, Fis family VAA049_2249 PF00465 Iron-containing alcohol dehydrogenase VAA049_225 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VAA049_225 PF17764 3′ DNA-binding domain (3′BD) VAA049_225 PF18074 Primosomal protein N C-terminal domain VAA049_225 PF00271 Helicase conserved C-terminal domain VAA049_225 PF00270 DEAD/DEAH box helicase VAA049_2250 PF00704 Glycosyl hydrolases family 18 VAA049_2250 PF06483 Chitinase C VAA049_2251 PF00483 Nucleotidyl transferase VAA049_2252 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2252 PF17158 Membrane-associated sensor, integral membrane domain VAA049_2255 PF13721 SecD export protein N-terminal TM region VAA049_2255 PF07549 SecD/SecF GG Motif VAA049_2255 PF02355 Protein export membrane protein VAA049_2256 PF07549 SecD/SecF GG Motif VAA049_2256 PF02355 Protein export membrane protein VAA049_2257 PF00106 short chain dehydrogenase VAA049_2258 PF00108 Thiolase, N-terminal domain VAA049_2258 PF02803 Thiolase, C-terminal domain VAA049_226 PF00356 Bacterial regulatory proteins, lacI family VAA049_2260 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VAA049_2261 PF00005 ABC transporter VAA049_2261 PF08402 TOBE domain VAA049_2262 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2264 PF07690 Major Facilitator Superfamily VAA049_2265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2265 PF07730 Histidine kinase VAA049_2265 PF05231 MASE1 VAA049_2266 PF00196 Bacterial regulatory proteins, luxR family VAA049_2266 PF00072 Response regulator receiver domain VAA049_2267 PF01966 HD domain VAA049_2269 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA049_227 PF05036 Sporulation related domain VAA049_2270 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VAA049_2271 PF00384 Molybdopterin oxidoreductase VAA049_2271 PF01568 Molydopterin dinucleotide binding domain VAA049_2271 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VAA049_2273 PF12838 4Fe-4S dicluster domain VAA049_2273 PF13187 4Fe-4S dicluster domain VAA049_2274 PF00672 HAMP domain VAA049_2274 PF07730 Histidine kinase VAA049_2274 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VAA049_2274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2275 PF00196 Bacterial regulatory proteins, luxR family VAA049_2275 PF00072 Response regulator receiver domain VAA049_2276 PF03315 Serine dehydratase beta chain VAA049_2276 PF03313 Serine dehydratase alpha chain VAA049_2277 PF03606 C4-dicarboxylate anaerobic carrier VAA049_2278 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_2278 PF12729 Four helix bundle sensory module for signal transduction VAA049_2278 PF00672 HAMP domain VAA049_2279 PF13419 Haloacid dehalogenase-like hydrolase VAA049_228 PF00227 Proteasome subunit VAA049_2280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA049_2280 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA049_2281 PF13488 Glycine zipper VAA049_2281 PF00691 OmpA family VAA049_2282 PF00672 HAMP domain VAA049_2282 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_2283 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VAA049_2283 PF01266 FAD dependent oxidoreductase VAA049_2284 PF00294 pfkB family carbohydrate kinase VAA049_2285 PF08244 Glycosyl hydrolases family 32 C terminal VAA049_2285 PF00251 Glycosyl hydrolases family 32 N-terminal domain VAA049_2287 PF00367 phosphotransferase system, EIIB VAA049_2287 PF02378 Phosphotransferase system, EIIC VAA049_229 PF10431 C-terminal, D2-small domain, of ClpB protein VAA049_229 PF07724 AAA domain (Cdc48 subfamily) VAA049_229 PF00004 ATPase family associated with various cellular activities (AAA) VAA049_2296 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_2296 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA049_2299 PF04143 Sulphur transport VAA049_23 PF01323 DSBA-like thioredoxin domain VAA049_230 PF01040 UbiA prenyltransferase family VAA049_2302 PF00873 AcrB/AcrD/AcrF family VAA049_2303 PF00881 Nitroreductase family VAA049_2304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2304 PF03466 LysR substrate binding domain VAA049_2305 PF03992 Antibiotic biosynthesis monooxygenase VAA049_2307 PF06942 GlpM protein VAA049_231 PF03737 Aldolase/RraA VAA049_2310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA049_2310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA049_2315 PF14706 Transposase DNA-binding VAA049_2315 PF01609 Transposase DDE domain VAA049_2315 PF02281 Transposase Tn5 dimerisation domain VAA049_2316 PF02779 Transketolase, pyrimidine binding domain VAA049_2316 PF00456 Transketolase, thiamine diphosphate binding domain VAA049_2316 PF02780 Transketolase, C-terminal domain VAA049_2317 PF00923 Transaldolase/Fructose-6-phosphate aldolase VAA049_2318 PF04198 Putative sugar-binding domain VAA049_2319 PF08329 Chitinase A, N-terminal domain VAA049_2319 PF00704 Glycosyl hydrolases family 18 VAA049_2320 PF00581 Rhodanese-like domain VAA049_2322 PF00899 ThiF family VAA049_2323 PF03454 MoeA C-terminal region (domain IV) VAA049_2323 PF03453 MoeA N-terminal region (domain I and II) VAA049_2323 PF00994 Probable molybdopterin binding domain VAA049_2324 PF01227 GTP cyclohydrolase I VAA049_2325 PF01641 SelR domain VAA049_2325 PF01625 Peptide methionine sulfoxide reductase VAA049_2326 PF01268 Formate--tetrahydrofolate ligase VAA049_2327 PF01741 Large-conductance mechanosensitive channel, MscL VAA049_233 PF00121 Triosephosphate isomerase VAA049_2330 PF13419 Haloacid dehalogenase-like hydrolase VAA049_2331 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA049_2331 PF14760 Rnk N-terminus VAA049_2332 PF13419 Haloacid dehalogenase-like hydrolase VAA049_2334 PF00266 Aminotransferase class-V VAA049_2336 PF00005 ABC transporter VAA049_2337 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2338 PF00392 Bacterial regulatory proteins, gntR family VAA049_2338 PF07702 UTRA domain VAA049_2340 PF00854 POT family VAA049_2345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA049_2346 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2347 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA049_2347 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2348 PF00005 ABC transporter VAA049_2348 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA049_2349 PF00132 Bacterial transferase hexapeptide (six repeats) VAA049_2349 PF12804 MobA-like NTP transferase domain VAA049_2349 PF03479 Plants and Prokaryotes Conserved (PCC) domain VAA049_2352 PF02798 Glutathione S-transferase, N-terminal domain VAA049_2352 PF00043 Glutathione S-transferase, C-terminal domain VAA049_2356 PF03061 Thioesterase superfamily VAA049_2358 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA049_2358 PF12793 Sugar transport-related sRNA regulator N-term VAA049_2359 PF07715 TonB-dependent Receptor Plug Domain VAA049_2359 PF04886 PT repeat VAA049_2359 PF00593 TonB dependent receptor VAA049_2360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2360 PF03466 LysR substrate binding domain VAA049_2361 PF00583 Acetyltransferase (GNAT) family VAA049_2361 PF13607 Succinyl-CoA ligase like flavodoxin domain VAA049_2361 PF13380 CoA binding domain VAA049_2363 PF07478 D-ala D-ala ligase C-terminus VAA049_2363 PF01820 D-ala D-ala ligase N-terminus VAA049_2365 PF01253 Translation initiation factor SUI1 VAA049_237 PF08220 DeoR-like helix-turn-helix domain VAA049_237 PF00455 DeoR C terminal sensor domain VAA049_2377 PF03701 Uncharacterised protein family (UPF0181) VAA049_238 PF00166 Chaperonin 10 Kd subunit VAA049_2380 PF00072 Response regulator receiver domain VAA049_2380 PF00486 Transcriptional regulatory protein, C terminal VAA049_2382 PF02233 NAD(P) transhydrogenase beta subunit VAA049_2383 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VAA049_2383 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VAA049_2383 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VAA049_2387 PF17158 Membrane-associated sensor, integral membrane domain VAA049_2387 PF00990 Diguanylate cyclase, GGDEF domain VAA049_239 PF00118 TCP-1/cpn60 chaperonin family VAA049_2390 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2390 PF17151 Periplasmic sensor domain VAA049_2396 PF08274 PhnA Zinc-Ribbon VAA049_2396 PF03831 PhnA domain VAA049_2398 PF03741 Integral membrane protein TerC family VAA049_24 PF01636 Phosphotransferase enzyme family VAA049_2400 PF00149 Calcineurin-like phosphoesterase VAA049_2400 PF02872 5'-nucleotidase, C-terminal domain VAA049_2401 PF11398 Protein of unknown function (DUF2813) VAA049_2402 PF06496 Protein of unknown function (DUF1097) VAA049_2403 PF03466 LysR substrate binding domain VAA049_2403 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2404 PF01226 Formate/nitrite transporter VAA049_2405 PF04264 YceI-like domain VAA049_2406 PF01292 Prokaryotic cytochrome b561 VAA049_2408 PF00563 EAL domain VAA049_2408 PF10388 EAL-domain associated signalling protein domain VAA049_241 PF04055 Radical SAM superfamily VAA049_2410 PF09335 SNARE associated Golgi protein VAA049_2411 PF02416 mttA/Hcf106 family VAA049_2412 PF00486 Transcriptional regulatory protein, C terminal VAA049_2412 PF00072 Response regulator receiver domain VAA049_2413 PF02702 Osmosensitive K+ channel His kinase sensor domain VAA049_2413 PF13493 Domain of unknown function (DUF4118) VAA049_2413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2413 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2414 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VAA049_2414 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VAA049_2414 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA049_2414 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VAA049_2414 PF10371 Domain of unknown function VAA049_2415 PF02705 K+ potassium transporter VAA049_2416 PF01926 50S ribosome-binding GTPase VAA049_2417 PF02492 CobW/HypB/UreG, nucleotide-binding domain VAA049_2417 PF07683 Cobalamin synthesis protein cobW C-terminal domain VAA049_2418 PF00654 Voltage gated chloride channel VAA049_242 PF01132 Elongation factor P (EF-P) OB domain VAA049_242 PF08207 Elongation factor P (EF-P) KOW-like domain VAA049_242 PF09285 Elongation factor P, C-terminal VAA049_2420 PF00155 Aminotransferase class I and II VAA049_2421 PF00072 Response regulator receiver domain VAA049_2421 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2422 PF13476 AAA domain VAA049_2423 PF00149 Calcineurin-like phosphoesterase VAA049_2423 PF12320 Type 5 capsule protein repressor C-terminal domain VAA049_2424 PF00356 Bacterial regulatory proteins, lacI family VAA049_2424 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA049_2425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA049_2425 PF00381 PTS HPr component phosphorylation site VAA049_2426 PF00294 pfkB family carbohydrate kinase VAA049_2427 PF02378 Phosphotransferase system, EIIC VAA049_2427 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VAA049_2428 PF08443 RimK-like ATP-grasp domain VAA049_2428 PF18030 RimK PreATP-grasp domain VAA049_2429 PF00155 Aminotransferase class I and II VAA049_243 PF02313 Fumarate reductase subunit D VAA049_2431 PF13597 Anaerobic ribonucleoside-triphosphate reductase VAA049_2431 PF03477 ATP cone domain VAA049_244 PF02300 Fumarate reductase subunit C VAA049_2444 PF12833 Helix-turn-helix domain VAA049_2444 PF01965 DJ-1/PfpI family VAA049_2449 PF17676 LD-carboxypeptidase C-terminal domain VAA049_2449 PF02016 LD-carboxypeptidase N-terminal domain VAA049_245 PF13085 2Fe-2S iron-sulfur cluster binding domain VAA049_245 PF13183 4Fe-4S dicluster domain VAA049_246 PF00890 FAD binding domain VAA049_246 PF02910 Fumarate reductase flavoprotein C-term VAA049_2467 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA049_247 PF00152 tRNA synthetases class II (D, K and N) VAA049_2474 PF14602 Hexapeptide repeat of succinyl-transferase VAA049_2474 PF12464 Maltose acetyltransferase VAA049_2479 PF00583 Acetyltransferase (GNAT) family VAA049_248 PF00581 Rhodanese-like domain VAA049_2481 PF13302 Acetyltransferase (GNAT) domain VAA049_2483 PF02567 Phenazine biosynthesis-like protein VAA049_249 PF02556 Preprotein translocase subunit SecB VAA049_2492 PF13302 Acetyltransferase (GNAT) domain VAA049_2493 PF13737 Transposase DDE domain VAA049_25 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VAA049_25 PF13746 4Fe-4S dicluster domain VAA049_25 PF12801 4Fe-4S binding domain VAA049_250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VAA049_250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VAA049_2501 PF00005 ABC transporter VAA049_2502 PF01032 FecCD transport family VAA049_2503 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VAA049_2505 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VAA049_2506 PF02654 Cobalamin-5-phosphate synthase VAA049_2507 PF02277 Phosphoribosyltransferase VAA049_2508 PF01641 SelR domain VAA049_251 PF06426 Serine acetyltransferase, N-terminal VAA049_251 PF00132 Bacterial transferase hexapeptide (six repeats) VAA049_2510 PF08411 Exonuclease C-terminal VAA049_2510 PF00929 Exonuclease VAA049_2511 PF03788 LrgA family VAA049_2512 PF04172 LrgB-like family VAA049_2513 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA049_2513 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VAA049_2515 PF02222 ATP-grasp domain VAA049_2516 PF05724 Thiopurine S-methyltransferase (TPMT) VAA049_2519 PF00216 Bacterial DNA-binding protein VAA049_2520 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VAA049_2520 PF01588 Putative tRNA binding domain VAA049_2520 PF03484 tRNA synthetase B5 domain VAA049_2520 PF03147 Ferredoxin-fold anticodon binding domain VAA049_2520 PF03483 B3/4 domain VAA049_2521 PF01409 tRNA synthetases class II core domain (F) VAA049_2521 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VAA049_2522 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2522 PF00072 Response regulator receiver domain VAA049_2528 PF01066 CDP-alcohol phosphatidyltransferase VAA049_2529 PF01541 GIY-YIG catalytic domain VAA049_2529 PF02151 UvrB/uvrC motif VAA049_2529 PF08459 UvrC Helix-hairpin-helix N-terminal VAA049_253 PF00311 Phosphoenolpyruvate carboxylase VAA049_2530 PF00196 Bacterial regulatory proteins, luxR family VAA049_2530 PF00072 Response regulator receiver domain VAA049_2531 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2531 PF00563 EAL domain VAA049_2531 PF13426 PAS domain VAA049_2532 PF03104 DNA polymerase family B, exonuclease domain VAA049_2532 PF00136 DNA polymerase family B VAA049_2534 PF01132 Elongation factor P (EF-P) OB domain VAA049_2534 PF09285 Elongation factor P, C-terminal VAA049_2534 PF08207 Elongation factor P (EF-P) KOW-like domain VAA049_2535 PF04269 Protein of unknown function, DUF440 VAA049_2537 PF07702 UTRA domain VAA049_2537 PF00392 Bacterial regulatory proteins, gntR family VAA049_2538 PF01979 Amidohydrolase family VAA049_2539 PF00491 Arginase family VAA049_254 PF01546 Peptidase family M20/M25/M40 VAA049_254 PF07687 Peptidase dimerisation domain VAA049_2540 PF17391 Urocanase N-terminal domain VAA049_2540 PF17392 Urocanase C-terminal domain VAA049_2540 PF01175 Urocanase Rossmann-like domain VAA049_2541 PF00221 Aromatic amino acid lyase VAA049_2543 PF00089 Trypsin VAA049_2544 PF04191 Phospholipid methyltransferase VAA049_2545 PF02913 FAD linked oxidases, C-terminal domain VAA049_2545 PF01565 FAD binding domain VAA049_2545 PF13183 4Fe-4S dicluster domain VAA049_2548 PF00691 OmpA family VAA049_2548 PF13488 Glycine zipper VAA049_255 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA049_255 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA049_2552 PF01259 SAICAR synthetase VAA049_2554 PF00390 Malic enzyme, N-terminal domain VAA049_2554 PF03949 Malic enzyme, NAD binding domain VAA049_2556 PF02698 DUF218 domain VAA049_2557 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2557 PF08448 PAS fold VAA049_2558 PF00266 Aminotransferase class-V VAA049_256 PF00696 Amino acid kinase family VAA049_2560 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_2561 PF00664 ABC transporter transmembrane region VAA049_2561 PF00005 ABC transporter VAA049_2562 PF00664 ABC transporter transmembrane region VAA049_2562 PF00005 ABC transporter VAA049_2563 PF01479 S4 domain VAA049_2563 PF00849 RNA pseudouridylate synthase VAA049_2564 PF01300 Telomere recombination VAA049_2565 PF02811 PHP domain VAA049_2566 PF04715 Anthranilate synthase component I, N terminal region VAA049_2566 PF00425 chorismate binding enzyme VAA049_2567 PF00117 Glutamine amidotransferase class-I VAA049_2568 PF02885 Glycosyl transferase family, helical bundle domain VAA049_2568 PF00591 Glycosyl transferase family, a/b domain VAA049_2569 PF00218 Indole-3-glycerol phosphate synthase VAA049_2569 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VAA049_257 PF00764 Arginosuccinate synthase VAA049_2570 PF00291 Pyridoxal-phosphate dependent enzyme VAA049_2571 PF00290 Tryptophan synthase alpha chain VAA049_2572 PF00375 Sodium:dicarboxylate symporter family VAA049_2573 PF00265 Thymidine kinase VAA049_2574 PF01336 OB-fold nucleic acid binding domain VAA049_2574 PF00152 tRNA synthetases class II (D, K and N) VAA049_2574 PF02938 GAD domain VAA049_2575 PF01904 Protein of unknown function DUF72 VAA049_2576 PF13649 Methyltransferase domain VAA049_2577 PF08003 Protein of unknown function (DUF1698) VAA049_2578 PF08443 RimK-like ATP-grasp domain VAA049_2578 PF18030 RimK PreATP-grasp domain VAA049_258 PF00206 Lyase VAA049_258 PF14698 Argininosuccinate lyase C-terminal VAA049_2581 PF00266 Aminotransferase class-V VAA049_2583 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2583 PF00989 PAS fold VAA049_2583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2586 PF04993 TfoX N-terminal domain VAA049_2586 PF04994 TfoX C-terminal domain VAA049_2588 PF03956 Lysine exporter LysO VAA049_2590 PF00282 Pyridoxal-dependent decarboxylase conserved domain VAA049_2591 PF01418 Helix-turn-helix domain, rpiR family VAA049_2591 PF01380 SIS domain VAA049_2592 PF00171 Aldehyde dehydrogenase family VAA049_2592 PF00465 Iron-containing alcohol dehydrogenase VAA049_2593 PF00462 Glutaredoxin VAA049_2594 PF06826 Predicted Permease Membrane Region VAA049_2594 PF02080 TrkA-C domain VAA049_2595 PF00004 ATPase family associated with various cellular activities (AAA) VAA049_2595 PF07724 AAA domain (Cdc48 subfamily) VAA049_2595 PF02861 Clp amino terminal domain, pathogenicity island component VAA049_2595 PF10431 C-terminal, D2-small domain, of ClpB protein VAA049_2595 PF17871 AAA lid domain VAA049_2596 PF02617 ATP-dependent Clp protease adaptor protein ClpS VAA049_2597 PF00313 'Cold-shock' DNA-binding domain VAA049_2598 PF03971 Monomeric isocitrate dehydrogenase VAA049_2599 PF00849 RNA pseudouridylate synthase VAA049_26 PF06288 Protein of unknown function (DUF1040) VAA049_260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA049_260 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_2600 PF01502 Phosphoribosyl-AMP cyclohydrolase VAA049_2600 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VAA049_2601 PF00977 Histidine biosynthesis protein VAA049_2602 PF00977 Histidine biosynthesis protein VAA049_2603 PF00117 Glutamine amidotransferase class-I VAA049_2604 PF00475 Imidazoleglycerol-phosphate dehydratase VAA049_2604 PF08645 Polynucleotide kinase 3 phosphatase VAA049_2605 PF00155 Aminotransferase class I and II VAA049_2606 PF00815 Histidinol dehydrogenase VAA049_2607 PF08029 HisG, C-terminal domain VAA049_2607 PF01634 ATP phosphoribosyltransferase VAA049_2608 PF03553 Na+/H+ antiporter family VAA049_2609 PF00816 H-NS histone family VAA049_261 PF08534 Redoxin VAA049_261 PF00462 Glutaredoxin VAA049_2610 PF00294 pfkB family carbohydrate kinase VAA049_2612 PF04356 Protein of unknown function (DUF489) VAA049_2613 PF00206 Lyase VAA049_2613 PF08328 Adenylosuccinate lyase C-terminal VAA049_2615 PF16036 Chalcone isomerase-like VAA049_262 PF03466 LysR substrate binding domain VAA049_262 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2620 PF00106 short chain dehydrogenase VAA049_2622 PF01435 Peptidase family M48 VAA049_2625 PF08241 Methyltransferase domain VAA049_2626 PF00155 Aminotransferase class I and II VAA049_2627 PF06968 Biotin and Thiamin Synthesis associated domain VAA049_2627 PF04055 Radical SAM superfamily VAA049_2628 PF00202 Aminotransferase class-III VAA049_2629 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA049_2629 PF02403 Seryl-tRNA synthetase N-terminal domain VAA049_263 PF00912 Transglycosylase VAA049_263 PF17092 Penicillin-binding protein OB-like domain VAA049_263 PF00905 Penicillin binding protein transpeptidase domain VAA049_2630 PF12002 MgsA AAA+ ATPase C terminal VAA049_2630 PF16193 AAA C-terminal domain VAA049_2630 PF00004 ATPase family associated with various cellular activities (AAA) VAA049_2631 PF03548 Outer membrane lipoprotein carrier protein LolA VAA049_2632 PF02810 SEC-C motif VAA049_2632 PF07517 SecA DEAD-like domain VAA049_2632 PF07516 SecA Wing and Scaffold domain VAA049_2632 PF01043 SecA preprotein cross-linking domain VAA049_2633 PF01207 Dihydrouridine synthase (Dus) VAA049_2634 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2634 PF05230 MASE2 domain VAA049_2635 PF00005 ABC transporter VAA049_2636 PF02653 Branched-chain amino acid transport system / permease component VAA049_2638 PF09905 DNA-binding protein VF530 VAA049_2639 PF04217 Protein of unknown function, DUF412 VAA049_2640 PF00871 Acetokinase family VAA049_2641 PF07085 DRTGG domain VAA049_2641 PF01515 Phosphate acetyl/butaryl transferase VAA049_2642 PF13409 Glutathione S-transferase, N-terminal domain VAA049_2645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA049_2645 PF00005 ABC transporter VAA049_2646 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA049_2646 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2647 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2648 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA049_2650 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2650 PF08448 PAS fold VAA049_2650 PF00072 Response regulator receiver domain VAA049_2650 PF13188 PAS domain VAA049_2651 PF00072 Response regulator receiver domain VAA049_2651 PF00158 Sigma-54 interaction domain VAA049_2651 PF02954 Bacterial regulatory protein, Fis family VAA049_2652 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2652 PF03707 Bacterial signalling protein N terminal repeat VAA049_2652 PF13188 PAS domain VAA049_2652 PF00563 EAL domain VAA049_2653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2653 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2654 PF13426 PAS domain VAA049_2654 PF00989 PAS fold VAA049_2654 PF13188 PAS domain VAA049_2654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2654 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2656 PF00072 Response regulator receiver domain VAA049_2659 PF03481 Putative GTP-binding controlling metal-binding VAA049_2659 PF01300 Telomere recombination VAA049_2662 PF01161 Phosphatidylethanolamine-binding protein VAA049_2664 PF00704 Glycosyl hydrolases family 18 VAA049_2664 PF06483 Chitinase C VAA049_2667 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA049_2667 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA049_2668 PF01022 Bacterial regulatory protein, arsR family VAA049_2669 PF02386 Cation transport protein VAA049_2670 PF02254 TrkA-N domain VAA049_2670 PF02080 TrkA-C domain VAA049_2673 PF00486 Transcriptional regulatory protein, C terminal VAA049_2673 PF00072 Response regulator receiver domain VAA049_2674 PF13493 Domain of unknown function (DUF4118) VAA049_2674 PF02702 Osmosensitive K+ channel His kinase sensor domain VAA049_2674 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2674 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2675 PF03824 High-affinity nickel-transport protein VAA049_2676 PF02583 Metal-sensitive transcriptional repressor VAA049_2679 PF17848 Acetyl-coA carboxylase zinc finger domain VAA049_2679 PF01039 Carboxyl transferase domain VAA049_268 PF00263 Bacterial type II and III secretion system protein VAA049_268 PF03958 Bacterial type II/III secretion system short domain VAA049_268 PF07660 Secretin and TonB N terminus short domain VAA049_268 PF11741 AMIN domain VAA049_2682 PF13737 Transposase DDE domain VAA049_2685 PF08448 PAS fold VAA049_2685 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2687 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VAA049_269 PF01202 Shikimate kinase VAA049_2690 PF13404 AsnC-type helix-turn-helix domain VAA049_2690 PF01037 Lrp/AsnC ligand binding domain VAA049_2691 PF00291 Pyridoxal-phosphate dependent enzyme VAA049_2692 PF01343 Peptidase family S49 VAA049_2692 PF08496 Peptidase family S49 N-terminal VAA049_2693 PF00106 short chain dehydrogenase VAA049_2694 PF03692 Putative zinc- or iron-chelating domain VAA049_2695 PF03692 Putative zinc- or iron-chelating domain VAA049_2696 PF13662 Toprim domain VAA049_2696 PF02132 RecR protein VAA049_2697 PF02575 YbaB/EbfC DNA-binding family VAA049_2698 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VAA049_2698 PF12169 DNA polymerase III subunits gamma and tau domain III VAA049_2698 PF12170 DNA polymerase III tau subunit V interacting with alpha VAA049_2699 PF00156 Phosphoribosyl transferase domain VAA049_27 PF07070 SpoOM protein VAA049_270 PF01761 3-dehydroquinate synthase VAA049_2700 PF04304 Protein of unknown function (DUF454) VAA049_2702 PF00072 Response regulator receiver domain VAA049_2703 PF03466 LysR substrate binding domain VAA049_2703 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2704 PF00881 Nitroreductase family VAA049_2705 PF00378 Enoyl-CoA hydratase/isomerase VAA049_2705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VAA049_2705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VAA049_2706 PF00108 Thiolase, N-terminal domain VAA049_2706 PF02803 Thiolase, C-terminal domain VAA049_2707 PF04542 Sigma-70 region 2 VAA049_2707 PF08281 Sigma-70, region 4 VAA049_2709 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA049_2710 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VAA049_2711 PF01451 Low molecular weight phosphotyrosine protein phosphatase VAA049_2712 PF12557 Cob(I)alamin adenosyltransferase N terminal VAA049_2712 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VAA049_2714 PF05170 AsmA family VAA049_2715 PF00485 Phosphoribulokinase / Uridine kinase family VAA049_2716 PF10609 NUBPL iron-transfer P-loop NTPase VAA049_2717 PF01588 Putative tRNA binding domain VAA049_2717 PF09334 tRNA synthetases class I (M) VAA049_2719 PF01048 Phosphorylase superfamily VAA049_272 PF02086 D12 class N6 adenine-specific DNA methyltransferase VAA049_2720 PF00403 Heavy-metal-associated domain VAA049_2721 PF03061 Thioesterase superfamily VAA049_2721 PF07085 DRTGG domain VAA049_2721 PF00392 Bacterial regulatory proteins, gntR family VAA049_2721 PF00571 CBS domain VAA049_2722 PF07694 5TMR of 5TMR-LYT VAA049_2722 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2723 PF02391 MoaE protein VAA049_2724 PF02597 ThiS family VAA049_2725 PF01967 MoaC family VAA049_2726 PF00994 Probable molybdopterin binding domain VAA049_2727 PF06463 Molybdenum Cofactor Synthesis C VAA049_2727 PF04055 Radical SAM superfamily VAA049_2728 PF01627 Hpt domain VAA049_2729 PF01933 Uncharacterised protein family UPF0052 VAA049_273 PF00834 Ribulose-phosphate 3 epimerase family VAA049_2730 PF02954 Bacterial regulatory protein, Fis family VAA049_2730 PF00072 Response regulator receiver domain VAA049_2730 PF00158 Sigma-54 interaction domain VAA049_2731 PF17757 UvrB interaction domain VAA049_2731 PF12344 Ultra-violet resistance protein B VAA049_2731 PF00271 Helicase conserved C-terminal domain VAA049_2731 PF02151 UvrB/uvrC motif VAA049_2731 PF04851 Type III restriction enzyme, res subunit VAA049_2733 PF02508 Rnf-Nqr subunit, membrane protein VAA049_2734 PF04060 Putative Fe-S cluster VAA049_2735 PF13375 RnfC Barrel sandwich hybrid domain VAA049_2735 PF10531 SLBB domain VAA049_2735 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VAA049_2735 PF12838 4Fe-4S dicluster domain VAA049_2736 PF03116 NQR2, RnfD, RnfE family VAA049_2737 PF04205 FMN-binding domain VAA049_2738 PF02508 Rnf-Nqr subunit, membrane protein VAA049_2739 PF10576 Iron-sulfur binding domain of endonuclease III VAA049_2739 PF00633 Helix-hairpin-helix motif VAA049_2739 PF00730 HhH-GPD superfamily base excision DNA repair protein VAA049_274 PF13419 Haloacid dehalogenase-like hydrolase VAA049_2740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VAA049_2741 PF10952 Protein of unknown function (DUF2753) VAA049_2742 PF18393 MotY N-terminal domain VAA049_2742 PF00691 OmpA family VAA049_2743 PF00929 Exonuclease VAA049_2744 PF13726 Na+-H+ antiporter family VAA049_2744 PF03553 Na+/H+ antiporter family VAA049_2745 PF00156 Phosphoribosyl transferase domain VAA049_2746 PF02674 Colicin V production protein VAA049_2747 PF05036 Sporulation related domain VAA049_2748 PF02875 Mur ligase family, glutamate ligase domain VAA049_2748 PF08245 Mur ligase middle domain VAA049_2749 PF01039 Carboxyl transferase domain VAA049_2749 PF17848 Acetyl-coA carboxylase zinc finger domain VAA049_275 PF00579 tRNA synthetases class I (W and Y) VAA049_2750 PF01416 tRNA pseudouridine synthase VAA049_2752 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VAA049_2752 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA049_2753 PF00367 phosphotransferase system, EIIB VAA049_2753 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VAA049_2753 PF02378 Phosphotransferase system, EIIC VAA049_2754 PF01979 Amidohydrolase family VAA049_2755 PF00480 ROK family VAA049_2755 PF01047 MarR family VAA049_2756 PF00999 Sodium/hydrogen exchanger family VAA049_2756 PF02254 TrkA-N domain VAA049_2757 PF13537 Glutamine amidotransferase domain VAA049_2757 PF00733 Asparagine synthase VAA049_2758 PF02357 Transcription termination factor nusG VAA049_2759 PF00854 POT family VAA049_2760 PF00762 Ferrochelatase VAA049_2761 PF05191 Adenylate kinase, active site lid VAA049_2762 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2762 PF00183 Hsp90 protein VAA049_2763 PF00486 Transcriptional regulatory protein, C terminal VAA049_2764 PF17323 Trans-membrane regulatory protein ToxS VAA049_2766 PF12850 Calcineurin-like phosphoesterase superfamily domain VAA049_2767 PF01370 NAD dependent epimerase/dehydratase family VAA049_2767 PF08338 Domain of unknown function (DUF1731) VAA049_2768 PF00106 short chain dehydrogenase VAA049_2769 PF00085 Thioredoxin VAA049_2770 PF16200 C-terminal region of band_7 VAA049_2770 PF01145 SPFH domain / Band 7 family VAA049_2771 PF01957 NfeD-like C-terminal, partner-binding VAA049_2772 PF13411 MerR HTH family regulatory protein VAA049_2774 PF13609 Gram-negative porin VAA049_2775 PF00533 BRCA1 C Terminus (BRCT) domain VAA049_2775 PF03120 NAD-dependent DNA ligase OB-fold domain VAA049_2775 PF12826 Helix-hairpin-helix motif VAA049_2775 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VAA049_2775 PF01653 NAD-dependent DNA ligase adenylation domain VAA049_2776 PF04354 ZipA, C-terminal FtsZ-binding domain VAA049_2778 PF00291 Pyridoxal-phosphate dependent enzyme VAA049_2779 PF00381 PTS HPr component phosphorylation site VAA049_278 PF18693 TRAM domain VAA049_278 PF04055 Radical SAM superfamily VAA049_278 PF00919 Uncharacterized protein family UPF0004 VAA049_2780 PF05524 PEP-utilising enzyme, N-terminal VAA049_2780 PF02896 PEP-utilising enzyme, TIM barrel domain VAA049_2780 PF00391 PEP-utilising enzyme, mobile domain VAA049_2781 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VAA049_2782 PF01494 FAD binding domain VAA049_2783 PF01938 TRAM domain VAA049_2783 PF00919 Uncharacterized protein family UPF0004 VAA049_2783 PF04055 Radical SAM superfamily VAA049_2784 PF02562 PhoH-like protein VAA049_2785 PF02130 Uncharacterized protein family UPF0054 VAA049_2786 PF03471 Transporter associated domain VAA049_2786 PF00571 CBS domain VAA049_2787 PF00795 Carbon-nitrogen hydrolase VAA049_2788 PF07295 Zinc-ribbon containing domain VAA049_2789 PF08264 Anticodon-binding domain of tRNA VAA049_2789 PF00133 tRNA synthetases class I (I, L, M and V) VAA049_2789 PF13603 Leucyl-tRNA synthetase, Domain 2 VAA049_279 PF00117 Glutamine amidotransferase class-I VAA049_2790 PF04390 Lipopolysaccharide-assembly VAA049_2791 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VAA049_2791 PF06144 DNA polymerase III, delta subunit VAA049_2793 PF02590 Predicted SPOUT methyltransferase VAA049_2794 PF00905 Penicillin binding protein transpeptidase domain VAA049_2794 PF03717 Penicillin-binding Protein dimerisation domain VAA049_2795 PF01098 Cell cycle protein VAA049_2796 PF05036 Sporulation related domain VAA049_2796 PF03330 Lytic transglycolase VAA049_2797 PF00768 D-alanyl-D-alanine carboxypeptidase VAA049_2797 PF07943 Penicillin-binding protein 5, C-terminal domain VAA049_2798 PF01609 Transposase DDE domain VAA049_2798 PF14706 Transposase DNA-binding VAA049_2798 PF02281 Transposase Tn5 dimerisation domain VAA049_2799 PF04359 Protein of unknown function (DUF493) VAA049_28 PF03006 Haemolysin-III related VAA049_280 PF00202 Aminotransferase class-III VAA049_2800 PF03099 Biotin/lipoate A/B protein ligase family VAA049_2801 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VAA049_2801 PF04055 Radical SAM superfamily VAA049_2803 PF00464 Serine hydroxymethyltransferase VAA049_2807 PF02706 Chain length determinant protein VAA049_2807 PF13807 G-rich domain on putative tyrosine kinase VAA049_2807 PF13614 AAA domain VAA049_2808 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VAA049_2808 PF10531 SLBB domain VAA049_2808 PF02563 Polysaccharide biosynthesis/export protein VAA049_281 PF04958 Arginine N-succinyltransferase beta subunit VAA049_2810 PF02397 Bacterial sugar transferase VAA049_2813 PF17945 Beta/Gamma crystallin VAA049_2813 PF12561 ToxR activated gene A lipoprotein domain VAA049_2816 PF03808 Glycosyl transferase WecB/TagA/CpsF family VAA049_2818 PF00534 Glycosyl transferases group 1 VAA049_2818 PF13439 Glycosyltransferase Family 4 VAA049_282 PF00171 Aldehyde dehydrogenase family VAA049_2824 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VAA049_2824 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VAA049_2824 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VAA049_2825 PF02350 UDP-N-acetylglucosamine 2-epimerase VAA049_2827 PF00873 AcrB/AcrD/AcrF family VAA049_2828 PF13533 Biotin-lipoyl like VAA049_2833 PF16657 Maltogenic Amylase, C-terminal domain VAA049_2833 PF00128 Alpha amylase, catalytic domain VAA049_2834 PF00367 phosphotransferase system, EIIB VAA049_2834 PF02378 Phosphotransferase system, EIIC VAA049_2835 PF00356 Bacterial regulatory proteins, lacI family VAA049_2837 PF09383 NIL domain VAA049_2837 PF00005 ABC transporter VAA049_2838 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2839 PF03180 NLPA lipoprotein VAA049_284 PF00027 Cyclic nucleotide-binding domain VAA049_284 PF13545 Crp-like helix-turn-helix domain VAA049_2840 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VAA049_2841 PF07348 Syd protein (SUKH-2) VAA049_2842 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VAA049_2842 PF14489 QueF-like protein VAA049_2844 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2845 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VAA049_2845 PF11892 Domain of unknown function (DUF3412) VAA049_2845 PF03641 Possible lysine decarboxylase VAA049_2846 PF01367 5'-3' exonuclease, C-terminal SAM fold VAA049_2846 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VAA049_2847 PF04241 Protein of unknown function (DUF423) VAA049_2848 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2848 PF03466 LysR substrate binding domain VAA049_2849 PF02926 THUMP domain VAA049_2849 PF02568 Thiamine biosynthesis protein (ThiI) VAA049_285 PF00485 Phosphoribulokinase / Uridine kinase family VAA049_2850 PF13677 Membrane MotB of proton-channel complex MotA/MotB VAA049_2850 PF00691 OmpA family VAA049_2851 PF01618 MotA/TolQ/ExbB proton channel family VAA049_2852 PF02609 Exonuclease VII small subunit VAA049_2853 PF00348 Polyprenyl synthetase VAA049_2854 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VAA049_2854 PF02779 Transketolase, pyrimidine binding domain VAA049_2854 PF02780 Transketolase, C-terminal domain VAA049_2855 PF00849 RNA pseudouridylate synthase VAA049_2856 PF04287 tRNA pseudouridine synthase C VAA049_2858 PF13302 Acetyltransferase (GNAT) domain VAA049_286 PF06794 Uncharacterised protein family (UPF0270) VAA049_2861 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VAA049_2862 PF03806 AbgT putative transporter family VAA049_2863 PF00444 Ribosomal protein L36 VAA049_2864 PF01197 Ribosomal protein L31 VAA049_2865 PF01980 tRNA-methyltransferase O VAA049_2865 PF18389 TrmO C-terminal domain VAA049_2866 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VAA049_2866 PF03129 Anticodon binding domain VAA049_2866 PF04073 Aminoacyl-tRNA editing domain VAA049_2868 PF06786 Uncharacterised protein family (UPF0253) VAA049_287 PF00561 alpha/beta hydrolase fold VAA049_2870 PF02769 AIR synthase related protein, C-terminal domain VAA049_2870 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VAA049_2870 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VAA049_2871 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_2871 PF01464 Transglycosylase SLT domain VAA049_2873 PF14437 MafB19-like deaminase VAA049_2874 PF03806 AbgT putative transporter family VAA049_2879 PF00114 Pilin (bacterial filament) VAA049_2879 PF07963 Prokaryotic N-terminal methylation motif VAA049_2880 PF00226 DnaJ domain VAA049_2880 PF01556 DnaJ C terminal domain VAA049_2880 PF00684 DnaJ central domain VAA049_2881 PF00012 Hsp70 protein VAA049_2882 PF01025 GrpE VAA049_2883 PF01513 ATP-NAD kinase VAA049_2884 PF02463 RecF/RecN/SMC N terminal domain VAA049_2885 PF04355 SmpA / OmlA family VAA049_2886 PF03658 RnfH family Ubiquitin VAA049_2887 PF03364 Polyketide cyclase / dehydrase and lipid transport VAA049_2888 PF01668 SmpB protein VAA049_2889 PF11867 Domain of unknown function (DUF3387) VAA049_2889 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VAA049_2889 PF18766 SWI2/SNF2 ATPase VAA049_289 PF00005 ABC transporter VAA049_289 PF12848 ABC transporter VAA049_2890 PF01420 Type I restriction modification DNA specificity domain VAA049_2891 PF02384 N-6 DNA Methylase VAA049_2895 PF00037 4Fe-4S binding domain VAA049_2895 PF11953 Domain of unknown function (DUF3470) VAA049_2896 PF08032 RNA 2'-O ribose methyltransferase substrate binding VAA049_2896 PF00588 SpoU rRNA Methylase family VAA049_2898 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VAA049_2899 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VAA049_290 PF02525 Flavodoxin-like fold VAA049_2900 PF04223 Citrate lyase, alpha subunit (CitF) VAA049_2901 PF03328 HpcH/HpaI aldolase/citrate lyase family VAA049_2902 PF06857 Malonate decarboxylase delta subunit (MdcD) VAA049_2903 PF08218 Citrate lyase ligase C-terminal domain VAA049_2904 PF03390 2-hydroxycarboxylate transporter family VAA049_2905 PF04277 Oxaloacetate decarboxylase, gamma chain VAA049_2906 PF00682 HMGL-like VAA049_2906 PF02436 Conserved carboxylase domain VAA049_2906 PF00364 Biotin-requiring enzyme VAA049_2907 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VAA049_2908 PF17203 Single cache domain 3 VAA049_2908 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2909 PF00072 Response regulator receiver domain VAA049_2909 PF12431 Transcriptional regulator VAA049_2912 PF03466 LysR substrate binding domain VAA049_2912 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2913 PF01266 FAD dependent oxidoreductase VAA049_2914 PF01235 Sodium:alanine symporter family VAA049_2915 PF14864 Alkyl sulfatase C-terminal VAA049_2915 PF14863 Alkyl sulfatase dimerisation VAA049_2915 PF00753 Metallo-beta-lactamase superfamily VAA049_2916 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2916 PF03466 LysR substrate binding domain VAA049_2917 PF01648 4'-phosphopantetheinyl transferase superfamily VAA049_2917 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VAA049_2918 PF00005 ABC transporter VAA049_2919 PF01032 FecCD transport family VAA049_292 PF02254 TrkA-N domain VAA049_292 PF00999 Sodium/hydrogen exchanger family VAA049_2920 PF01032 FecCD transport family VAA049_2921 PF01497 Periplasmic binding protein VAA049_2924 PF00425 chorismate binding enzyme VAA049_2925 PF00501 AMP-binding enzyme VAA049_2925 PF13193 AMP-binding enzyme C-terminal domain VAA049_2926 PF00857 Isochorismatase family VAA049_2926 PF00550 Phosphopantetheine attachment site VAA049_2927 PF01184 GPR1/FUN34/yaaH family VAA049_2928 PF00704 Glycosyl hydrolases family 18 VAA049_2928 PF06483 Chitinase C VAA049_2929 PF00958 GMP synthase C terminal domain VAA049_2929 PF00117 Glutamine amidotransferase class-I VAA049_2929 PF02540 NAD synthase VAA049_293 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA049_2930 PF00478 IMP dehydrogenase / GMP reductase domain VAA049_2930 PF00571 CBS domain VAA049_2932 PF02601 Exonuclease VII, large subunit VAA049_2932 PF13742 OB-fold nucleic acid binding domain VAA049_2934 PF01926 50S ribosome-binding GTPase VAA049_2934 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VAA049_2935 PF13360 PQQ-like domain VAA049_2936 PF09976 Tetratricopeptide repeat-like domain VAA049_2937 PF13393 Histidyl-tRNA synthetase VAA049_2937 PF03129 Anticodon binding domain VAA049_2938 PF04551 GcpE protein VAA049_2939 PF13464 Domain of unknown function (DUF4115) VAA049_294 PF01112 Asparaginase VAA049_2940 PF04055 Radical SAM superfamily VAA049_2941 PF00334 Nucleoside diphosphate kinase VAA049_2942 PF00883 Cytosol aminopeptidase family, catalytic domain VAA049_2942 PF12404 Peptidase VAA049_2943 PF04384 Iron-sulphur cluster assembly VAA049_2944 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA049_2945 PF00012 Hsp70 protein VAA049_2946 PF00226 DnaJ domain VAA049_2946 PF07743 HSCB C-terminal oligomerisation domain VAA049_2947 PF01521 Iron-sulphur cluster biosynthesis VAA049_2948 PF01592 NifU-like N terminal domain VAA049_2949 PF00266 Aminotransferase class-V VAA049_295 PF00709 Adenylosuccinate synthetase VAA049_2950 PF02082 Transcriptional regulator VAA049_2951 PF00588 SpoU rRNA Methylase family VAA049_2952 PF00459 Inositol monophosphatase family VAA049_2953 PF02355 Protein export membrane protein VAA049_2953 PF07549 SecD/SecF GG Motif VAA049_2954 PF02355 Protein export membrane protein VAA049_2954 PF07549 SecD/SecF GG Motif VAA049_2954 PF13721 SecD export protein N-terminal TM region VAA049_2955 PF02699 Preprotein translocase subunit VAA049_2956 PF01702 Queuine tRNA-ribosyltransferase VAA049_2957 PF02547 Queuosine biosynthesis protein VAA049_2958 PF00571 CBS domain VAA049_2959 PF00463 Isocitrate lyase family VAA049_296 PF08238 Sel1 repeat VAA049_2960 PF01274 Malate synthase VAA049_2961 PF03466 LysR substrate binding domain VAA049_2961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_2962 PF00578 AhpC/TSA family VAA049_2962 PF10417 C-terminal domain of 1-Cys peroxiredoxin VAA049_2963 PF03932 CutC family VAA049_2964 PF03976 Polyphosphate kinase 2 (PPK2) VAA049_2965 PF01895 PhoU domain VAA049_2966 PF00005 ABC transporter VAA049_2967 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2968 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_2969 PF13089 Polyphosphate kinase N-terminal domain VAA049_2969 PF17941 Polyphosphate kinase C-terminal domain 1 VAA049_2969 PF13090 Polyphosphate kinase C-terminal domain 2 VAA049_2969 PF02503 Polyphosphate kinase middle domain VAA049_297 PF00884 Sulfatase VAA049_297 PF11893 Domain of unknown function (DUF3413) VAA049_2970 PF02541 Ppx/GppA phosphatase family VAA049_2971 PF12849 PBP superfamily domain VAA049_2972 PF00512 His Kinase A (phospho-acceptor) domain VAA049_2972 PF11808 Phosphate regulon sensor protein PhoR VAA049_2972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_2972 PF00989 PAS fold VAA049_2973 PF00486 Transcriptional regulatory protein, C terminal VAA049_2973 PF00072 Response regulator receiver domain VAA049_2974 PF04381 Putative exonuclease, RdgC VAA049_2976 PF00037 4Fe-4S binding domain VAA049_2977 PF00881 Nitroreductase family VAA049_298 PF00575 S1 RNA binding domain VAA049_298 PF00773 RNB domain VAA049_298 PF08206 Ribonuclease B OB domain VAA049_298 PF08461 Ribonuclease R winged-helix domain VAA049_298 PF17876 Cold shock domain VAA049_2984 PF07724 AAA domain (Cdc48 subfamily) VAA049_2984 PF00004 ATPase family associated with various cellular activities (AAA) VAA049_2984 PF17871 AAA lid domain VAA049_2984 PF02861 Clp amino terminal domain, pathogenicity island component VAA049_2984 PF10431 C-terminal, D2-small domain, of ClpB protein VAA049_2986 PF01479 S4 domain VAA049_2986 PF00849 RNA pseudouridylate synthase VAA049_2987 PF13525 Outer membrane lipoprotein VAA049_2988 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VAA049_2989 PF00800 Prephenate dehydratase VAA049_2989 PF01817 Chorismate mutase type II VAA049_299 PF00588 SpoU rRNA Methylase family VAA049_299 PF08032 RNA 2'-O ribose methyltransferase substrate binding VAA049_2990 PF13416 Bacterial extracellular solute-binding protein VAA049_2991 PF00990 Diguanylate cyclase, GGDEF domain VAA049_2991 PF00563 EAL domain VAA049_2992 PF01931 Protein of unknown function DUF84 VAA049_2993 PF01371 Trp repressor protein VAA049_2994 PF01464 Transglycosylase SLT domain VAA049_2994 PF14718 Soluble lytic murein transglycosylase L domain VAA049_2995 PF12848 ABC transporter VAA049_2995 PF00005 ABC transporter VAA049_2996 PF07238 PilZ domain VAA049_2997 PF02153 Prephenate dehydrogenase VAA049_2997 PF01817 Chorismate mutase type II VAA049_2998 PF00793 DAHP synthetase I family VAA049_2999 PF07694 5TMR of 5TMR-LYT VAA049_2999 PF06580 Histidine kinase VAA049_3 PF02463 RecF/RecN/SMC N terminal domain VAA049_30 PF02386 Cation transport protein VAA049_300 PF00338 Ribosomal protein S10p/S20e VAA049_3000 PF04397 LytTr DNA-binding domain VAA049_3000 PF00072 Response regulator receiver domain VAA049_3001 PF00933 Glycosyl hydrolase family 3 N terminal domain VAA049_3002 PF03702 Anhydro-N-acetylmuramic acid kinase VAA049_3003 PF13580 SIS domain VAA049_3006 PF02554 Carbon starvation protein CstA VAA049_3007 PF02401 LytB protein VAA049_3008 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA049_3009 PF01252 Signal peptidase (SPase) II VAA049_301 PF00297 Ribosomal protein L3 VAA049_3010 PF08264 Anticodon-binding domain of tRNA VAA049_3010 PF00133 tRNA synthetases class I (I, L, M and V) VAA049_3010 PF06827 Zinc finger found in FPG and IleRS VAA049_3011 PF06574 FAD synthetase VAA049_3011 PF01687 Riboflavin kinase VAA049_3012 PF03023 Lipid II flippase MurJ VAA049_3013 PF01649 Ribosomal protein S20 VAA049_3014 PF01022 Bacterial regulatory protein, arsR family VAA049_3015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_3015 PF03466 LysR substrate binding domain VAA049_3016 PF02690 Na+/Pi-cotransporter VAA049_3017 PF00303 Thymidylate synthase VAA049_3018 PF01790 Prolipoprotein diacylglyceryl transferase VAA049_3019 PF01925 Sulfite exporter TauE/SafE VAA049_302 PF00573 Ribosomal protein L4/L1 family VAA049_3020 PF05524 PEP-utilising enzyme, N-terminal VAA049_3020 PF00391 PEP-utilising enzyme, mobile domain VAA049_3020 PF01590 GAF domain VAA049_3020 PF02896 PEP-utilising enzyme, TIM barrel domain VAA049_3021 PF00293 NUDIX domain VAA049_3022 PF02976 DNA mismatch repair enzyme MutH VAA049_3023 PF00248 Aldo/keto reductase family VAA049_3025 PF02954 Bacterial regulatory protein, Fis family VAA049_3025 PF00158 Sigma-54 interaction domain VAA049_3025 PF00072 Response regulator receiver domain VAA049_3026 PF00152 tRNA synthetases class II (D, K and N) VAA049_3026 PF01336 OB-fold nucleic acid binding domain VAA049_3027 PF00472 RF-1 domain VAA049_3027 PF03462 PCRF domain VAA049_3028 PF05525 Branched-chain amino acid transport protein VAA049_3029 PF05175 Methyltransferase small domain VAA049_303 PF00276 Ribosomal protein L23 VAA049_3030 PF00270 DEAD/DEAH box helicase VAA049_3030 PF00271 Helicase conserved C-terminal domain VAA049_3031 PF00009 Elongation factor Tu GTP binding domain VAA049_3031 PF03144 Elongation factor Tu domain 2 VAA049_3031 PF16658 Class II release factor RF3, C-terminal domain VAA049_3033 PF00563 EAL domain VAA049_3033 PF00990 Diguanylate cyclase, GGDEF domain VAA049_3033 PF03707 Bacterial signalling protein N terminal repeat VAA049_3035 PF13508 Acetyltransferase (GNAT) domain VAA049_3037 PF03707 Bacterial signalling protein N terminal repeat VAA049_3037 PF00990 Diguanylate cyclase, GGDEF domain VAA049_3037 PF00563 EAL domain VAA049_304 PF00181 Ribosomal Proteins L2, RNA binding domain VAA049_304 PF03947 Ribosomal Proteins L2, C-terminal domain VAA049_3042 PF14706 Transposase DNA-binding VAA049_3042 PF01609 Transposase DDE domain VAA049_3042 PF02281 Transposase Tn5 dimerisation domain VAA049_3043 PF07719 Tetratricopeptide repeat VAA049_3043 PF13181 Tetratricopeptide repeat VAA049_3044 PF00013 KH domain VAA049_3044 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VAA049_3044 PF00575 S1 RNA binding domain VAA049_3044 PF03725 3' exoribonuclease family, domain 2 VAA049_3044 PF01138 3' exoribonuclease family, domain 1 VAA049_3045 PF00312 Ribosomal protein S15 VAA049_3046 PF09157 Pseudouridine synthase II TruB, C-terminal VAA049_3046 PF01509 TruB family pseudouridylate synthase (N terminal domain) VAA049_3046 PF16198 tRNA pseudouridylate synthase B C-terminal domain VAA049_3047 PF02033 Ribosome-binding factor A VAA049_3048 PF08364 Bacterial translation initiation factor IF-2 associated region VAA049_3048 PF00009 Elongation factor Tu GTP binding domain VAA049_3048 PF11987 Translation-initiation factor 2 VAA049_3048 PF04760 Translation initiation factor IF-2, N-terminal region VAA049_3049 PF13184 NusA-like KH domain VAA049_3049 PF00575 S1 RNA binding domain VAA049_3049 PF08529 NusA N-terminal domain VAA049_305 PF00203 Ribosomal protein S19 VAA049_3050 PF02576 RimP N-terminal domain VAA049_3050 PF17384 RimP C-terminal SH3 domain VAA049_3053 PF03840 Preprotein translocase SecG subunit VAA049_3055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA049_3055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA049_3055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA049_3055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA049_3056 PF00809 Pterin binding enzyme VAA049_3057 PF01434 Peptidase family M41 VAA049_3057 PF06480 FtsH Extracellular VAA049_3057 PF17862 AAA+ lid domain VAA049_3057 PF00004 ATPase family associated with various cellular activities (AAA) VAA049_3058 PF01728 FtsJ-like methyltransferase VAA049_3059 PF01985 CRS1 / YhbY (CRM) domain VAA049_306 PF00237 Ribosomal protein L22p/L17e VAA049_3060 PF01272 Transcription elongation factor, GreA/GreB, C-term VAA049_3060 PF03449 Transcription elongation factor, N-terminal VAA049_3061 PF13609 Gram-negative porin VAA049_3062 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VAA049_3063 PF01479 S4 domain VAA049_3063 PF00579 tRNA synthetases class I (W and Y) VAA049_3064 PF01551 Peptidase family M23 VAA049_3064 PF04225 Opacity-associated protein A LysM-like domain VAA049_3065 PF00873 AcrB/AcrD/AcrF family VAA049_3067 PF01521 Iron-sulphur cluster biosynthesis VAA049_3068 PF00202 Aminotransferase class-III VAA049_307 PF07650 KH domain VAA049_307 PF00189 Ribosomal protein S3, C-terminal domain VAA049_3070 PF01594 AI-2E family transporter VAA049_3071 PF05175 Methyltransferase small domain VAA049_3071 PF08468 Methyltransferase small domain N-terminal VAA049_3072 PF00072 Response regulator receiver domain VAA049_3072 PF09308 LuxQ, periplasmic VAA049_3072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_3072 PF00512 His Kinase A (phospho-acceptor) domain VAA049_3073 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA049_3074 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_3075 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_3075 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA049_3076 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA049_3076 PF00005 ABC transporter VAA049_3077 PF00005 ABC transporter VAA049_3077 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA049_3079 PF01869 BadF/BadG/BcrA/BcrD ATPase family VAA049_308 PF00252 Ribosomal protein L16p/L10e VAA049_3080 PF00728 Glycosyl hydrolase family 20, catalytic domain VAA049_3080 PF02838 Glycosyl hydrolase family 20, domain 2 VAA049_3081 PF06165 Glycosyltransferase family 36 VAA049_3081 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VAA049_3082 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA049_3082 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA049_3082 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA049_3082 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA049_3083 PF08402 TOBE domain VAA049_3083 PF00005 ABC transporter VAA049_3085 PF13416 Bacterial extracellular solute-binding protein VAA049_3086 PF00909 Ammonium Transporter Family VAA049_3087 PF00543 Nitrogen regulatory protein P-II VAA049_3088 PF06062 Uncharacterised protein family (UPF0231) VAA049_3089 PF06434 Aconitate hydratase 2 N-terminus VAA049_3089 PF00330 Aconitase family (aconitate hydratase) VAA049_3089 PF11791 Aconitate B N-terminal domain VAA049_309 PF00831 Ribosomal L29 protein VAA049_3091 PF01734 Patatin-like phospholipase VAA049_3092 PF14814 Bifunctional transglycosylase second domain VAA049_3092 PF00912 Transglycosylase VAA049_3092 PF00905 Penicillin binding protein transpeptidase domain VAA049_3093 PF00271 Helicase conserved C-terminal domain VAA049_3093 PF00270 DEAD/DEAH box helicase VAA049_3093 PF08482 ATP-dependent helicase C-terminal VAA049_3093 PF04408 Helicase associated domain (HA2) VAA049_3095 PF03749 Sugar fermentation stimulation protein RE domain VAA049_3095 PF17746 SfsA N-terminal OB domain VAA049_3096 PF01258 Prokaryotic dksA/traR C4-type zinc finger VAA049_3097 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA049_3098 PF01743 Poly A polymerase head domain VAA049_3098 PF12626 Polymerase A arginine-rich C-terminus VAA049_3098 PF12627 Probable RNA and SrmB- binding site of polymerase A VAA049_3099 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VAA049_31 PF02080 TrkA-C domain VAA049_31 PF02254 TrkA-N domain VAA049_310 PF00366 Ribosomal protein S17 VAA049_3100 PF02548 Ketopantoate hydroxymethyltransferase VAA049_3101 PF02569 Pantoate-beta-alanine ligase VAA049_3102 PF01061 ABC-2 type transporter VAA049_3103 PF00005 ABC transporter VAA049_3104 PF01740 STAS domain VAA049_3104 PF00916 Sulfate permease family VAA049_3105 PF00484 Carbonic anhydrase VAA049_3106 PF00156 Phosphoribosyl transferase domain VAA049_3107 PF00440 Bacterial regulatory proteins, tetR family VAA049_3108 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA049_3109 PF04348 LppC putative lipoprotein VAA049_311 PF00238 Ribosomal protein L14p/L23e VAA049_3110 PF02021 Uncharacterised protein family UPF0102 VAA049_3111 PF13580 SIS domain VAA049_3112 PF04972 BON domain VAA049_3113 PF04386 Stringent starvation protein B VAA049_3114 PF00043 Glutathione S-transferase, C-terminal domain VAA049_3114 PF02798 Glutathione S-transferase, N-terminal domain VAA049_3115 PF02167 Cytochrome C1 family VAA049_3116 PF00032 Cytochrome b(C-terminal)/b6/petD VAA049_3116 PF00033 Cytochrome b/b6/petB VAA049_3117 PF00355 Rieske [2Fe-2S] domain VAA049_3117 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VAA049_3118 PF00380 Ribosomal protein S9/S16 VAA049_3119 PF00572 Ribosomal protein L13 VAA049_312 PF00467 KOW motif VAA049_312 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VAA049_3120 PF03969 AFG1-like ATPase VAA049_3122 PF00595 PDZ domain VAA049_3123 PF13180 PDZ domain VAA049_3124 PF01245 Ribosomal protein L19 VAA049_3125 PF01746 tRNA (Guanine-1)-methyltransferase VAA049_3126 PF05239 PRC-barrel domain VAA049_3126 PF01782 RimM N-terminal domain VAA049_3127 PF00886 Ribosomal protein S16 VAA049_3128 PF02881 SRP54-type protein, helical bundle domain VAA049_3128 PF02978 Signal peptide binding domain VAA049_3128 PF00448 SRP54-type protein, GTPase domain VAA049_313 PF00673 ribosomal L5P family C-terminus VAA049_313 PF00281 Ribosomal protein L5 VAA049_3130 PF01578 Cytochrome C assembly protein VAA049_3131 PF00571 CBS domain VAA049_3131 PF01595 Cyclin M transmembrane N-terminal domain VAA049_3131 PF03471 Transporter associated domain VAA049_3132 PF02664 S-Ribosylhomocysteinase (LuxS) VAA049_3133 PF04262 Glutamate-cysteine ligase VAA049_3134 PF05193 Peptidase M16 inactive domain VAA049_3134 PF00675 Insulinase (Peptidase family M16) VAA049_3135 PF09335 SNARE associated Golgi protein VAA049_3137 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VAA049_3138 PF02436 Conserved carboxylase domain VAA049_3138 PF00364 Biotin-requiring enzyme VAA049_3138 PF00682 HMGL-like VAA049_3139 PF04277 Oxaloacetate decarboxylase, gamma chain VAA049_314 PF00253 Ribosomal protein S14p/S29e VAA049_3148 PF02599 Global regulator protein family VAA049_3149 PF00696 Amino acid kinase family VAA049_3149 PF13840 ACT domain VAA049_3149 PF01842 ACT domain VAA049_315 PF00410 Ribosomal protein S8 VAA049_3150 PF01411 tRNA synthetases class II (A) VAA049_3150 PF02272 DHHA1 domain VAA049_3150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VAA049_3151 PF02631 RecX family VAA049_3152 PF00154 recA bacterial DNA recombination protein VAA049_3153 PF02464 Competence-damaged protein VAA049_3154 PF00005 ABC transporter VAA049_3154 PF12857 TOBE-like domain VAA049_3155 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_3156 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_3158 PF00291 Pyridoxal-phosphate dependent enzyme VAA049_3159 PF05188 MutS domain II VAA049_3159 PF00488 MutS domain V VAA049_3159 PF05192 MutS domain III VAA049_3159 PF05190 MutS family domain IV VAA049_3159 PF01624 MutS domain I VAA049_316 PF00347 Ribosomal protein L6 VAA049_3160 PF04545 Sigma-70, region 4 VAA049_3160 PF00140 Sigma-70 factor, region 1.2 VAA049_3160 PF04542 Sigma-70 region 2 VAA049_3160 PF04539 Sigma-70 region 3 VAA049_3161 PF01476 LysM domain VAA049_3161 PF01551 Peptidase family M23 VAA049_3163 PF01975 Survival protein SurE VAA049_3164 PF01142 tRNA pseudouridine synthase D (TruD) VAA049_3165 PF02542 YgbB family VAA049_3166 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VAA049_3167 PF04977 Septum formation initiator VAA049_3168 PF02673 Bacitracin resistance protein BacA VAA049_3169 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VAA049_317 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VAA049_3170 PF02152 Dihydroneopterin aldolase VAA049_3171 PF02660 Glycerol-3-phosphate acyltransferase VAA049_3172 PF00561 alpha/beta hydrolase fold VAA049_3173 PF00814 Glycoprotease family VAA049_3174 PF01165 Ribosomal protein S21 VAA049_3175 PF09424 Yqey-like protein VAA049_3176 PF01807 CHC2 zinc finger VAA049_3176 PF08275 DNA primase catalytic core, N-terminal domain VAA049_3176 PF08278 DNA primase DnaG DnaB-binding VAA049_3176 PF10410 DnaB-helicase binding domain of primase VAA049_3177 PF00140 Sigma-70 factor, region 1.2 VAA049_3177 PF03979 Sigma-70 factor, region 1.1 VAA049_3177 PF04546 Sigma-70, non-essential region VAA049_3177 PF04545 Sigma-70, region 4 VAA049_3177 PF04539 Sigma-70 region 3 VAA049_3177 PF04542 Sigma-70 region 2 VAA049_318 PF00333 Ribosomal protein S5, N-terminal domain VAA049_318 PF03719 Ribosomal protein S5, C-terminal domain VAA049_3180 PF03480 Bacterial extracellular solute-binding protein, family 7 VAA049_3181 PF01380 SIS domain VAA049_3182 PF08220 DeoR-like helix-turn-helix domain VAA049_3182 PF00455 DeoR C terminal sensor domain VAA049_3183 PF02887 Pyruvate kinase, alpha/beta domain VAA049_3183 PF00224 Pyruvate kinase, barrel domain VAA049_3185 PF04402 Protein of unknown function (DUF541) VAA049_3186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_3186 PF03466 LysR substrate binding domain VAA049_3187 PF01810 LysE type translocator VAA049_3188 PF05552 Conserved TM helix VAA049_3188 PF00924 Mechanosensitive ion channel VAA049_3189 PF01116 Fructose-bisphosphate aldolase class-II VAA049_319 PF00327 Ribosomal protein L30p/L7e VAA049_3190 PF00162 Phosphoglycerate kinase VAA049_3191 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA049_3191 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA049_3192 PF00593 TonB dependent receptor VAA049_3192 PF07715 TonB-dependent Receptor Plug Domain VAA049_3193 PF03466 LysR substrate binding domain VAA049_3193 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_3194 PF00456 Transketolase, thiamine diphosphate binding domain VAA049_3194 PF02780 Transketolase, C-terminal domain VAA049_3194 PF02779 Transketolase, pyrimidine binding domain VAA049_3195 PF02773 S-adenosylmethionine synthetase, C-terminal domain VAA049_3195 PF02772 S-adenosylmethionine synthetase, central domain VAA049_3195 PF00438 S-adenosylmethionine synthetase, N-terminal domain VAA049_3196 PF17283 SprT-like zinc ribbon domain VAA049_3196 PF10263 SprT-like family VAA049_3197 PF04231 Endonuclease I VAA049_3198 PF04452 RNA methyltransferase VAA049_3199 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VAA049_3199 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VAA049_32 PF01189 16S rRNA methyltransferase RsmB/F VAA049_32 PF01029 NusB family VAA049_320 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VAA049_3200 PF02622 Uncharacterized ACR, COG1678 VAA049_3201 PF03652 Holliday junction resolvase VAA049_3202 PF00579 tRNA synthetases class I (W and Y) VAA049_3202 PF01479 S4 domain VAA049_3204 PF00437 Type II/IV secretion system protein VAA049_3205 PF00437 Type II/IV secretion system protein VAA049_3206 PF01168 Alanine racemase, N-terminal domain VAA049_3207 PF03807 NADP oxidoreductase coenzyme F420-dependent VAA049_3207 PF14748 Pyrroline-5-carboxylate reductase dimerisation VAA049_3208 PF02325 YGGT family VAA049_3209 PF02594 Uncharacterised ACR, YggU family COG1872 VAA049_321 PF00344 SecY translocase VAA049_3211 PF01725 Ham1 family VAA049_3212 PF04055 Radical SAM superfamily VAA049_3212 PF06969 HemN C-terminal domain VAA049_3213 PF04960 Glutaminase VAA049_3214 PF02390 Putative methyltransferase VAA049_3215 PF00633 Helix-hairpin-helix motif VAA049_3215 PF00730 HhH-GPD superfamily base excision DNA repair protein VAA049_3215 PF14815 NUDIX domain VAA049_3215 PF10576 Iron-sulfur binding domain of endonuclease III VAA049_3216 PF04362 Bacterial Fe(2+) trafficking VAA049_3217 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VAA049_3217 PF01464 Transglycosylase SLT domain VAA049_322 PF00444 Ribosomal protein L36 VAA049_3222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_3222 PF00672 HAMP domain VAA049_3222 PF12729 Four helix bundle sensory module for signal transduction VAA049_3228 PF00226 DnaJ domain VAA049_3228 PF05099 Tellurite resistance protein TerB VAA049_3229 PF04453 LPS transport system D VAA049_3229 PF03968 OstA-like protein VAA049_323 PF00416 Ribosomal protein S13/S18 VAA049_3230 PF09312 SurA N-terminal domain VAA049_3231 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VAA049_3232 PF00398 Ribosomal RNA adenine dimethylase VAA049_3233 PF04379 ApaG domain VAA049_3234 PF00149 Calcineurin-like phosphoesterase VAA049_3235 PF00186 Dihydrofolate reductase VAA049_3236 PF12821 Threonine/Serine exporter, ThrE VAA049_3237 PF06738 Putative threonine/serine exporter VAA049_3238 PF01018 GTP1/OBG VAA049_3238 PF01926 50S ribosome-binding GTPase VAA049_3239 PF01016 Ribosomal L27 protein VAA049_324 PF00411 Ribosomal protein S11 VAA049_3240 PF00829 Ribosomal prokaryotic L21 protein VAA049_3241 PF00348 Polyprenyl synthetase VAA049_3242 PF13520 Amino acid permease VAA049_3243 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VAA049_3243 PF00056 lactate/malate dehydrogenase, NAD binding domain VAA049_3244 PF02863 Arginine repressor, C-terminal domain VAA049_3244 PF01316 Arginine repressor, DNA binding domain VAA049_3245 PF16868 NMT1-like family VAA049_3247 PF00582 Universal stress protein family VAA049_325 PF01479 S4 domain VAA049_325 PF00163 Ribosomal protein S4/S9 N-terminal domain VAA049_3250 PF06877 Regulator of ribonuclease activity B VAA049_3253 PF01523 Putative modulator of DNA gyrase VAA049_3254 PF00795 Carbon-nitrogen hydrolase VAA049_3255 PF13116 Protein of unknown function VAA049_3255 PF13502 AsmA-like C-terminal region VAA049_3256 PF00575 S1 RNA binding domain VAA049_3256 PF10150 Ribonuclease E/G family VAA049_3257 PF02545 Maf-like protein VAA049_3258 PF04093 rod shape-determining protein MreD VAA049_3259 PF04085 rod shape-determining protein MreC VAA049_326 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VAA049_326 PF01000 RNA polymerase Rpb3/RpoA insert domain VAA049_326 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VAA049_3266 PF00114 Pilin (bacterial filament) VAA049_3266 PF07963 Prokaryotic N-terminal methylation motif VAA049_3267 PF00114 Pilin (bacterial filament) VAA049_3267 PF07963 Prokaryotic N-terminal methylation motif VAA049_3269 PF00482 Type II secretion system (T2SS), protein F VAA049_327 PF01196 Ribosomal protein L17 VAA049_3273 PF13401 AAA domain VAA049_3273 PF01471 Putative peptidoglycan binding domain VAA049_3274 PF07660 Secretin and TonB N terminus short domain VAA049_3274 PF11741 AMIN domain VAA049_3274 PF00263 Bacterial type II and III secretion system protein VAA049_3274 PF03958 Bacterial type II/III secretion system short domain VAA049_3278 PF00990 Diguanylate cyclase, GGDEF domain VAA049_3278 PF17157 Gammaproteobacterial periplasmic sensor domain VAA049_3278 PF00563 EAL domain VAA049_3279 PF00436 Single-strand binding protein family VAA049_3280 PF00196 Bacterial regulatory proteins, luxR family VAA049_3281 PF00483 Nucleotidyl transferase VAA049_3282 PF17755 UvrA DNA-binding domain VAA049_3282 PF00005 ABC transporter VAA049_3282 PF17760 UvrA interaction domain VAA049_3284 PF00266 Aminotransferase class-V VAA049_3285 PF00696 Amino acid kinase family VAA049_3285 PF01842 ACT domain VAA049_3286 PF02574 Homocysteine S-methyltransferase VAA049_3286 PF00809 Pterin binding enzyme VAA049_3286 PF02965 Vitamin B12 dependent methionine synthase, activation domain VAA049_3286 PF02607 B12 binding domain VAA049_3286 PF02310 B12 binding domain VAA049_3287 PF00999 Sodium/hydrogen exchanger family VAA049_329 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA049_329 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA049_33 PF02911 Formyl transferase, C-terminal domain VAA049_33 PF00551 Formyl transferase VAA049_330 PF00892 EamA-like transporter family VAA049_3301 PF01507 Phosphoadenosine phosphosulfate reductase family VAA049_3302 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VAA049_3302 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VAA049_3303 PF00175 Oxidoreductase NAD-binding domain VAA049_3303 PF00667 FAD binding domain VAA049_3303 PF00258 Flavodoxin VAA049_3306 PF09583 Phage shock protein G (Phageshock_PspG) VAA049_3307 PF01207 Dihydrouridine synthase (Dus) VAA049_3308 PF01475 Ferric uptake regulator family VAA049_331 PF04225 Opacity-associated protein A LysM-like domain VAA049_331 PF08525 Opacity-associated protein A N-terminal motif VAA049_3310 PF12706 Beta-lactamase superfamily domain VAA049_3311 PF00342 Phosphoglucose isomerase VAA049_3312 PF01894 Uncharacterised protein family UPF0047 VAA049_3313 PF00842 Alanine racemase, C-terminal domain VAA049_3313 PF01168 Alanine racemase, N-terminal domain VAA049_3314 PF03796 DnaB-like helicase C terminal domain VAA049_3314 PF00772 DnaB-like helicase N terminal domain VAA049_3316 PF03948 Ribosomal protein L9, C-terminal domain VAA049_3316 PF01281 Ribosomal protein L9, N-terminal domain VAA049_3317 PF01084 Ribosomal protein S18 VAA049_3318 PF00436 Single-strand binding protein family VAA049_3319 PF01250 Ribosomal protein S6 VAA049_332 PF13673 Acetyltransferase (GNAT) domain VAA049_3320 PF00210 Ferritin-like domain VAA049_3321 PF04324 BFD-like [2Fe-2S] binding domain VAA049_3322 PF03144 Elongation factor Tu domain 2 VAA049_3322 PF03143 Elongation factor Tu C-terminal domain VAA049_3322 PF00009 Elongation factor Tu GTP binding domain VAA049_3323 PF14492 Elongation Factor G, domain II VAA049_3323 PF00009 Elongation factor Tu GTP binding domain VAA049_3323 PF03144 Elongation factor Tu domain 2 VAA049_3323 PF00679 Elongation factor G C-terminus VAA049_3323 PF03764 Elongation factor G, domain IV VAA049_3324 PF00177 Ribosomal protein S7p/S5e VAA049_3325 PF00164 Ribosomal protein S12/S23 VAA049_3327 PF02635 DsrE/DsrF-like family VAA049_3328 PF02635 DsrE/DsrF-like family VAA049_3329 PF08348 YheO-like PAS domain VAA049_3329 PF13309 HTH domain VAA049_333 PF00270 DEAD/DEAH box helicase VAA049_333 PF00271 Helicase conserved C-terminal domain VAA049_333 PF03880 DbpA RNA binding domain VAA049_3330 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA049_3330 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VAA049_3332 PF04102 SlyX VAA049_3333 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VAA049_3334 PF01145 SPFH domain / Band 7 family VAA049_3335 PF12221 Bacterial membrane protein N terminal VAA049_3335 PF01145 SPFH domain / Band 7 family VAA049_3336 PF13167 GTP-binding GTPase N-terminal VAA049_3336 PF16360 GTP-binding GTPase Middle Region VAA049_3336 PF01926 50S ribosome-binding GTPase VAA049_3337 PF17209 Hfq protein VAA049_3339 PF08676 MutL C terminal dimerisation domain VAA049_3339 PF01119 DNA mismatch repair protein, C-terminal domain VAA049_3340 PF01520 N-acetylmuramoyl-L-alanine amidase VAA049_3341 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VAA049_3342 PF08331 Domain of unknown function (DUF1730) VAA049_335 PF00149 Calcineurin-like phosphoesterase VAA049_335 PF02872 5'-nucleotidase, C-terminal domain VAA049_3352 PF00929 Exonuclease VAA049_3353 PF03193 RsgA GTPase VAA049_3354 PF02666 Phosphatidylserine decarboxylase VAA049_3355 PF00939 Sodium:sulfate symporter transmembrane region VAA049_3357 PF01676 Metalloenzyme superfamily VAA049_3357 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VAA049_3359 PF01551 Peptidase family M23 VAA049_336 PF10414 Sirohaem synthase dimerisation region VAA049_336 PF14824 Sirohaem biosynthesis protein central VAA049_336 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VAA049_3360 PF00440 Bacterial regulatory proteins, tetR family VAA049_3360 PF08360 QacR-like protein, C-terminal region VAA049_3361 PF01208 Uroporphyrinogen decarboxylase (URO-D) VAA049_3362 PF00293 NUDIX domain VAA049_3362 PF09297 NADH pyrophosphatase zinc ribbon domain VAA049_3363 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VAA049_3364 PF04997 RNA polymerase Rpb1, domain 1 VAA049_3364 PF04998 RNA polymerase Rpb1, domain 5 VAA049_3364 PF05000 RNA polymerase Rpb1, domain 4 VAA049_3364 PF04983 RNA polymerase Rpb1, domain 3 VAA049_3364 PF00623 RNA polymerase Rpb1, domain 2 VAA049_3365 PF04560 RNA polymerase Rpb2, domain 7 VAA049_3365 PF04563 RNA polymerase beta subunit VAA049_3365 PF04565 RNA polymerase Rpb2, domain 3 VAA049_3365 PF00562 RNA polymerase Rpb2, domain 6 VAA049_3365 PF04561 RNA polymerase Rpb2, domain 2 VAA049_3365 PF10385 RNA polymerase beta subunit external 1 domain VAA049_3366 PF16320 Ribosomal protein L7/L12 dimerisation domain VAA049_3366 PF00542 Ribosomal protein L7/L12 C-terminal domain VAA049_3367 PF00466 Ribosomal protein L10 VAA049_3368 PF00687 Ribosomal protein L1p/L10e family VAA049_3369 PF00298 Ribosomal protein L11, RNA binding domain VAA049_3369 PF03946 Ribosomal protein L11, N-terminal domain VAA049_337 PF01507 Phosphoadenosine phosphosulfate reductase family VAA049_3370 PF02357 Transcription termination factor nusG VAA049_3370 PF00467 KOW motif VAA049_3371 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VAA049_3372 PF03143 Elongation factor Tu C-terminal domain VAA049_3372 PF03144 Elongation factor Tu domain 2 VAA049_3372 PF00009 Elongation factor Tu GTP binding domain VAA049_3377 PF00485 Phosphoribulokinase / Uridine kinase family VAA049_3378 PF08279 HTH domain VAA049_3378 PF02237 Biotin protein ligase C terminal domain VAA049_3378 PF03099 Biotin/lipoate A/B protein ligase family VAA049_3379 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VAA049_3379 PF01565 FAD binding domain VAA049_338 PF00009 Elongation factor Tu GTP binding domain VAA049_3381 PF13091 PLD-like domain VAA049_3388 PF00175 Oxidoreductase NAD-binding domain VAA049_3389 PF00175 Oxidoreductase NAD-binding domain VAA049_3389 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA049_3389 PF00970 Oxidoreductase FAD-binding domain VAA049_3390 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VAA049_3392 PF07498 Rho termination factor, N-terminal domain VAA049_3392 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA049_3392 PF07497 Rho termination factor, RNA-binding domain VAA049_3393 PF00085 Thioredoxin VAA049_3394 PF00271 Helicase conserved C-terminal domain VAA049_3394 PF00270 DEAD/DEAH box helicase VAA049_3395 PF02541 Ppx/GppA phosphatase family VAA049_3396 PF00072 Response regulator receiver domain VAA049_3396 PF09456 RcsC Alpha-Beta-Loop (ABL) VAA049_3396 PF00512 His Kinase A (phospho-acceptor) domain VAA049_3396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_3397 PF12832 MFS_1 like family VAA049_34 PF01327 Polypeptide deformylase VAA049_3400 PF16177 Acetyl-coenzyme A synthetase N-terminus VAA049_3400 PF00501 AMP-binding enzyme VAA049_3400 PF13193 AMP-binding enzyme C-terminal domain VAA049_3401 PF01220 Dehydroquinase class II VAA049_3402 PF00364 Biotin-requiring enzyme VAA049_3403 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VAA049_3403 PF02785 Biotin carboxylase C-terminal domain VAA049_3403 PF00289 Biotin carboxylase, N-terminal domain VAA049_3405 PF01207 Dihydrouridine synthase (Dus) VAA049_3406 PF02954 Bacterial regulatory protein, Fis family VAA049_3407 PF13784 Fic/DOC family N-terminal VAA049_3407 PF02661 Fic/DOC family VAA049_3408 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VAA049_3408 PF00356 Bacterial regulatory proteins, lacI family VAA049_3409 PF00920 Dehydratase family VAA049_3410 PF01202 Shikimate kinase VAA049_3411 PF02447 GntP family permease VAA049_3412 PF01081 KDPG and KHG aldolase VAA049_3413 PF07715 TonB-dependent Receptor Plug Domain VAA049_3413 PF00593 TonB dependent receptor VAA049_3415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_3415 PF00672 HAMP domain VAA049_3415 PF17200 Single Cache domain 2 VAA049_3416 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VAA049_3416 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VAA049_3416 PF01276 Orn/Lys/Arg decarboxylase, major domain VAA049_3417 PF13520 Amino acid permease VAA049_3418 PF18500 CadC C-terminal domain 1 VAA049_3418 PF00486 Transcriptional regulatory protein, C terminal VAA049_3419 PF13411 MerR HTH family regulatory protein VAA049_3420 PF02142 MGS-like domain VAA049_3420 PF01808 AICARFT/IMPCHase bienzyme VAA049_3421 PF02844 Phosphoribosylglycinamide synthetase, N domain VAA049_3421 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VAA049_3421 PF02843 Phosphoribosylglycinamide synthetase, C domain VAA049_3423 PF00216 Bacterial DNA-binding protein VAA049_3424 PF00571 CBS domain VAA049_3424 PF01595 Cyclin M transmembrane N-terminal domain VAA049_3425 PF00480 ROK family VAA049_3426 PF01238 Phosphomannose isomerase type I VAA049_3427 PF04222 Protein of unknown function (DUF416) VAA049_3428 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA049_3429 PF03167 Uracil DNA glycosylase superfamily VAA049_343 PF00005 ABC transporter VAA049_3430 PF00924 Mechanosensitive ion channel VAA049_3433 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VAA049_3433 PF00753 Metallo-beta-lactamase superfamily VAA049_3433 PF10996 Beta-Casp domain VAA049_3434 PF02397 Bacterial sugar transferase VAA049_3435 PF01370 NAD dependent epimerase/dehydratase family VAA049_3436 PF02719 Polysaccharide biosynthesis protein VAA049_3439 PF01370 NAD dependent epimerase/dehydratase family VAA049_3440 PF16363 GDP-mannose 4,6 dehydratase VAA049_3442 PF00535 Glycosyl transferase family 2 VAA049_3443 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VAA049_3444 PF03559 NDP-hexose 2,3-dehydratase VAA049_3445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VAA049_3446 PF13193 AMP-binding enzyme C-terminal domain VAA049_3446 PF00501 AMP-binding enzyme VAA049_3447 PF00106 short chain dehydrogenase VAA049_345 PF10795 Protein of unknown function (DUF2607) VAA049_3451 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VAA049_3451 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VAA049_3453 PF00483 Nucleotidyl transferase VAA049_3454 PF16363 GDP-mannose 4,6 dehydratase VAA049_3456 PF13439 Glycosyltransferase Family 4 VAA049_3456 PF00534 Glycosyl transferases group 1 VAA049_3458 PF14524 Wzt C-terminal domain VAA049_3458 PF00005 ABC transporter VAA049_346 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VAA049_3460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA049_3460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA049_3460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA049_3460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA049_3461 PF00483 Nucleotidyl transferase VAA049_3461 PF01050 Mannose-6-phosphate isomerase VAA049_3462 PF01370 NAD dependent epimerase/dehydratase family VAA049_3463 PF00457 Glycosyl hydrolases family 11 VAA049_3463 PF01522 Polysaccharide deacetylase VAA049_3466 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VAA049_3468 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VAA049_3469 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VAA049_347 PF01625 Peptide methionine sulfoxide reductase VAA049_3476 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VAA049_3477 PF00535 Glycosyl transferase family 2 VAA049_3478 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VAA049_3479 PF01467 Cytidylyltransferase-like VAA049_348 PF01103 Surface antigen VAA049_348 PF07244 Surface antigen variable number repeat VAA049_348 PF17243 POTRA domain TamA domain 1 VAA049_3480 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VAA049_3480 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VAA049_3480 PF06827 Zinc finger found in FPG and IleRS VAA049_3482 PF00471 Ribosomal protein L33 VAA049_3483 PF00830 Ribosomal L28 family VAA049_3484 PF04002 RadC-like JAB domain VAA049_3485 PF02743 Cache domain VAA049_3485 PF00672 HAMP domain VAA049_3485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_3486 PF02441 Flavoprotein VAA049_3486 PF04127 DNA / pantothenate metabolism flavoprotein VAA049_3487 PF00440 Bacterial regulatory proteins, tetR family VAA049_3488 PF03279 Bacterial lipid A biosynthesis acyltransferase VAA049_3489 PF03279 Bacterial lipid A biosynthesis acyltransferase VAA049_349 PF04357 TamB, inner membrane protein subunit of TAM complex VAA049_3490 PF00156 Phosphoribosyl transferase domain VAA049_3491 PF01138 3' exoribonuclease family, domain 1 VAA049_3491 PF03725 3' exoribonuclease family, domain 2 VAA049_3492 PF03755 YicC-like family, N-terminal region VAA049_3492 PF08340 Domain of unknown function (DUF1732) VAA049_3493 PF03350 Uncharacterized protein family, UPF0114 VAA049_3494 PF00367 phosphotransferase system, EIIB VAA049_3494 PF02378 Phosphotransferase system, EIIC VAA049_3495 PF13580 SIS domain VAA049_3496 PF01380 SIS domain VAA049_3496 PF01418 Helix-turn-helix domain, rpiR family VAA049_3497 PF01032 FecCD transport family VAA049_3498 PF01497 Periplasmic binding protein VAA049_3499 PF00005 ABC transporter VAA049_35 PF01476 LysM domain VAA049_350 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VAA049_3500 PF00593 TonB dependent receptor VAA049_3500 PF07715 TonB-dependent Receptor Plug Domain VAA049_3501 PF00005 ABC transporter VAA049_3501 PF00664 ABC transporter transmembrane region VAA049_3504 PF00570 HRDC domain VAA049_3504 PF00271 Helicase conserved C-terminal domain VAA049_3504 PF09382 RQC domain VAA049_3504 PF00270 DEAD/DEAH box helicase VAA049_3504 PF16124 RecQ zinc-binding VAA049_3505 PF00892 EamA-like transporter family VAA049_3507 PF12833 Helix-turn-helix domain VAA049_3508 PF01810 LysE type translocator VAA049_3509 PF13361 UvrD-like helicase C-terminal domain VAA049_3509 PF00580 UvrD/REP helicase N-terminal domain VAA049_351 PF00719 Inorganic pyrophosphatase VAA049_3510 PF01432 Peptidase family M3 VAA049_3511 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VAA049_3512 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_3512 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA049_3514 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_3514 PF12911 N-terminal TM domain of oligopeptide transport permease C VAA049_3516 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VAA049_3517 PF00005 ABC transporter VAA049_3517 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VAA049_352 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VAA049_3523 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VAA049_3524 PF00580 UvrD/REP helicase N-terminal domain VAA049_3524 PF13361 UvrD-like helicase C-terminal domain VAA049_3525 PF00440 Bacterial regulatory proteins, tetR family VAA049_3526 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VAA049_3527 PF00873 AcrB/AcrD/AcrF family VAA049_3528 PF04380 Membrane fusogenic activity VAA049_3529 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VAA049_3529 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VAA049_353 PF01225 Mur ligase family, catalytic domain VAA049_353 PF02875 Mur ligase family, glutamate ligase domain VAA049_353 PF08245 Mur ligase middle domain VAA049_3530 PF03466 LysR substrate binding domain VAA049_3530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_354 PF02441 Flavoprotein VAA049_3544 PF12724 Flavodoxin domain VAA049_3545 PF02386 Cation transport protein VAA049_3546 PF01205 Uncharacterized protein family UPF0029 VAA049_3546 PF09186 Domain of unknown function (DUF1949) VAA049_3547 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VAA049_3547 PF00378 Enoyl-CoA hydratase/isomerase VAA049_3547 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VAA049_3548 PF00108 Thiolase, N-terminal domain VAA049_3548 PF02803 Thiolase, C-terminal domain VAA049_3549 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_3549 PF03466 LysR substrate binding domain VAA049_3550 PF07690 Major Facilitator Superfamily VAA049_3551 PF00132 Bacterial transferase hexapeptide (six repeats) VAA049_3551 PF12804 MobA-like NTP transferase domain VAA049_3552 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VAA049_3552 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VAA049_3553 PF02874 ATP synthase alpha/beta family, beta-barrel domain VAA049_3553 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA049_3554 PF00231 ATP synthase VAA049_3555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA049_3555 PF00306 ATP synthase alpha/beta chain, C terminal domain VAA049_3555 PF02874 ATP synthase alpha/beta family, beta-barrel domain VAA049_3556 PF00213 ATP synthase delta (OSCP) subunit VAA049_3557 PF00430 ATP synthase B/B' CF(0) VAA049_3558 PF00137 ATP synthase subunit C VAA049_3559 PF00119 ATP synthase A chain VAA049_356 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_3560 PF03899 ATP synthase I chain VAA049_3561 PF17762 HTH domain found in ParB protein VAA049_3561 PF02195 ParB-like nuclease domain VAA049_3562 PF13614 AAA domain VAA049_3563 PF02527 rRNA small subunit methyltransferase G VAA049_3564 PF13932 GidA associated domain VAA049_3564 PF01134 Glucose inhibited division protein A VAA049_3565 PF00258 Flavodoxin VAA049_3566 PF01926 50S ribosome-binding GTPase VAA049_3566 PF12631 MnmE helical domain VAA049_3566 PF10396 GTP-binding protein TrmE N-terminus VAA049_3567 PF02096 60Kd inner membrane protein VAA049_3567 PF14849 YidC periplasmic domain VAA049_3568 PF00825 Ribonuclease P VAA049_3569 PF00005 ABC transporter VAA049_357 PF00005 ABC transporter VAA049_3570 PF00528 Binding-protein-dependent transport system inner membrane component VAA049_3571 PF00497 Bacterial extracellular solute-binding proteins, family 3 VAA049_358 PF04751 Protein of unknown function (DUF615) VAA049_359 PF01523 Putative modulator of DNA gyrase VAA049_36 PF02481 DNA recombination-mediator protein A VAA049_36 PF17782 DprA winged helix domain VAA049_360 PF03448 MgtE intracellular N domain VAA049_360 PF01769 Divalent cation transporter VAA049_360 PF00571 CBS domain VAA049_361 PF00381 PTS HPr component phosphorylation site VAA049_362 PF03668 P-loop ATPase protein family VAA049_363 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VAA049_364 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VAA049_365 PF04552 Sigma-54, DNA binding domain VAA049_365 PF00309 Sigma-54 factor, Activator interacting domain (AID) VAA049_365 PF04963 Sigma-54 factor, core binding domain VAA049_366 PF00005 ABC transporter VAA049_366 PF12399 Branched-chain amino acid ATP-binding cassette transporter VAA049_367 PF03968 OstA-like protein VAA049_37 PF04361 Protein of unknown function (DUF494) VAA049_370 PF00571 CBS domain VAA049_370 PF01380 SIS domain VAA049_371 PF01699 Sodium/calcium exchanger protein VAA049_372 PF00005 ABC transporter VAA049_373 PF02405 Permease MlaE VAA049_374 PF02470 MlaD protein VAA049_375 PF05494 MlaC protein VAA049_377 PF01722 BolA-like protein VAA049_378 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VAA049_379 PF01553 Acyltransferase VAA049_38 PF01396 Topoisomerase DNA binding C4 zinc finger VAA049_380 PF01042 Endoribonuclease L-PSP VAA049_381 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VAA049_381 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VAA049_382 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA049_382 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA049_383 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VAA049_383 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VAA049_384 PF02562 PhoH-like protein VAA049_384 PF13638 PIN domain VAA049_385 PF18339 RapA N-terminal Tudor like domain 1 VAA049_385 PF12137 RNA polymerase recycling family C-terminal VAA049_385 PF18337 RapA N-terminal Tudor like domain VAA049_385 PF00176 SNF2 family N-terminal domain VAA049_385 PF00271 Helicase conserved C-terminal domain VAA049_386 PF00849 RNA pseudouridylate synthase VAA049_387 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA049_387 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA049_388 PF00133 tRNA synthetases class I (I, L, M and V) VAA049_388 PF10458 Valyl tRNA synthetase tRNA binding arm VAA049_388 PF08264 Anticodon-binding domain of tRNA VAA049_389 PF04364 DNA polymerase III chi subunit, HolC VAA049_39 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VAA049_39 PF02222 ATP-grasp domain VAA049_390 PF00883 Cytosol aminopeptidase family, catalytic domain VAA049_390 PF02789 Cytosol aminopeptidase family, N-terminal domain VAA049_391 PF03739 Lipopolysaccharide export system permease LptF/LptG VAA049_392 PF03739 Lipopolysaccharide export system permease LptF/LptG VAA049_395 PF00072 Response regulator receiver domain VAA049_4 PF00204 DNA gyrase B VAA049_4 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_4 PF01751 Toprim domain VAA049_4 PF00986 DNA gyrase B subunit, carboxyl terminus VAA049_4 PF18053 DNA gyrase B subunit insert domain VAA049_40 PF00731 AIR carboxylase VAA049_405 PF00694 Aconitase C-terminal domain VAA049_406 PF00330 Aconitase family (aconitate hydratase) VAA049_407 PF00180 Isocitrate/isopropylmalate dehydrogenase VAA049_408 PF08502 LeuA allosteric (dimerisation) domain VAA049_408 PF00682 HMGL-like VAA049_41 PF01300 Telomere recombination VAA049_410 PF01569 PAP2 superfamily VAA049_412 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_412 PF03466 LysR substrate binding domain VAA049_413 PF00501 AMP-binding enzyme VAA049_414 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA049_414 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA049_414 PF00205 Thiamine pyrophosphate enzyme, central domain VAA049_415 PF10369 Small subunit of acetolactate synthase VAA049_416 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA049_416 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA049_416 PF01842 ACT domain VAA049_417 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VAA049_418 PF01812 5-formyltetrahydrofolate cyclo-ligase family VAA049_419 PF05164 Cell division protein ZapA VAA049_42 PF01218 Coproporphyrinogen III oxidase VAA049_420 PF03695 Uncharacterised protein family (UPF0149) VAA049_421 PF01494 FAD binding domain VAA049_422 PF01494 FAD binding domain VAA049_425 PF03937 Flavinator of succinate dehydrogenase VAA049_427 PF02910 Fumarate reductase flavoprotein C-term VAA049_427 PF00890 FAD binding domain VAA049_428 PF08281 Sigma-70, region 4 VAA049_428 PF04542 Sigma-70 region 2 VAA049_429 PF03872 Anti sigma-E protein RseA, N-terminal domain VAA049_429 PF03873 Anti sigma-E protein RseA, C-terminal domain VAA049_43 PF01488 Shikimate / quinate 5-dehydrogenase VAA049_43 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VAA049_43 PF08501 Shikimate dehydrogenase substrate binding domain VAA049_430 PF17188 MucB/RseB C-terminal domain VAA049_430 PF03888 MucB/RseB N-terminal domain VAA049_432 PF03144 Elongation factor Tu domain 2 VAA049_432 PF06421 GTP-binding protein LepA C-terminus VAA049_432 PF00009 Elongation factor Tu GTP binding domain VAA049_432 PF00679 Elongation factor G C-terminus VAA049_433 PF10502 Signal peptidase, peptidase S26 VAA049_434 PF00035 Double-stranded RNA binding motif VAA049_434 PF14622 Ribonuclease-III-like VAA049_435 PF01926 50S ribosome-binding GTPase VAA049_435 PF07650 KH domain VAA049_436 PF02565 Recombination protein O C terminal VAA049_436 PF11967 Recombination protein O N terminal VAA049_437 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VAA049_438 PF01648 4'-phosphopantetheinyl transferase superfamily VAA049_44 PF00132 Bacterial transferase hexapeptide (six repeats) VAA049_441 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VAA049_441 PF00672 HAMP domain VAA049_441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_441 PF00512 His Kinase A (phospho-acceptor) domain VAA049_441 PF01627 Hpt domain VAA049_441 PF00072 Response regulator receiver domain VAA049_442 PF00990 Diguanylate cyclase, GGDEF domain VAA049_443 PF01938 TRAM domain VAA049_443 PF05958 tRNA (Uracil-5-)-methyltransferase VAA049_444 PF02824 TGS domain VAA049_444 PF13291 ACT domain VAA049_444 PF04607 Region found in RelA / SpoT proteins VAA049_445 PF03819 MazG nucleotide pyrophosphohydrolase domain VAA049_446 PF06418 CTP synthase N-terminus VAA049_446 PF00117 Glutamine amidotransferase class-I VAA049_447 PF00113 Enolase, C-terminal TIM barrel domain VAA049_447 PF03952 Enolase, N-terminal domain VAA049_448 PF01966 HD domain VAA049_448 PF01743 Poly A polymerase head domain VAA049_448 PF12627 Probable RNA and SrmB- binding site of polymerase A VAA049_449 PF01471 Putative peptidoglycan binding domain VAA049_449 PF13401 AAA domain VAA049_451 PF08239 Bacterial SH3 domain VAA049_452 PF01384 Phosphate transporter family VAA049_453 PF01865 Protein of unknown function DUF47 VAA049_454 PF01928 CYTH domain VAA049_456 PF00672 HAMP domain VAA049_456 PF02743 Cache domain VAA049_456 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_457 PF08335 GlnD PII-uridylyltransferase VAA049_457 PF03710 Glutamate-ammonia ligase adenylyltransferase VAA049_458 PF01467 Cytidylyltransferase-like VAA049_458 PF00294 pfkB family carbohydrate kinase VAA049_459 PF02321 Outer membrane efflux protein VAA049_460 PF00293 NUDIX domain VAA049_461 PF06853 Protein of unknown function (DUF1249) VAA049_462 PF00149 Calcineurin-like phosphoesterase VAA049_463 PF05728 Uncharacterised protein family (UPF0227) VAA049_464 PF00204 DNA gyrase B VAA049_464 PF00986 DNA gyrase B subunit, carboxyl terminus VAA049_464 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_464 PF01751 Toprim domain VAA049_465 PF03989 DNA gyrase C-terminal domain, beta-propeller VAA049_465 PF00521 DNA gyrase/topoisomerase IV, subunit A VAA049_466 PF03884 DNA gyrase inhibitor YacG VAA049_467 PF07072 Cell division protein VAA049_468 PF01121 Dephospho-CoA kinase VAA049_469 PF01478 Type IV leader peptidase family VAA049_469 PF06750 Bacterial Peptidase A24 N-terminal domain VAA049_470 PF00482 Type II secretion system (T2SS), protein F VAA049_471 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VAA049_471 PF00437 Type II/IV secretion system protein VAA049_473 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VAA049_473 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VAA049_474 PF01510 N-acetylmuramoyl-L-alanine amidase VAA049_475 PF00258 Flavodoxin VAA049_476 PF02899 Phage integrase, N-terminal SAM-like domain VAA049_476 PF00589 Phage integrase family VAA049_477 PF13098 Thioredoxin-like domain VAA049_477 PF10411 Disulfide bond isomerase protein N-terminus VAA049_478 PF01368 DHH family VAA049_478 PF17768 RecJ OB domain VAA049_478 PF02272 DHHA1 domain VAA049_479 PF02872 5'-nucleotidase, C-terminal domain VAA049_479 PF00149 Calcineurin-like phosphoesterase VAA049_480 PF07729 FCD domain VAA049_480 PF00392 Bacterial regulatory proteins, gntR family VAA049_481 PF00456 Transketolase, thiamine diphosphate binding domain VAA049_481 PF17831 Pyruvate dehydrogenase E1 component middle domain VAA049_482 PF02817 e3 binding domain VAA049_482 PF00364 Biotin-requiring enzyme VAA049_482 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VAA049_483 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VAA049_483 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_484 PF01795 MraW methylase family VAA049_485 PF04999 Cell division protein FtsL VAA049_486 PF03717 Penicillin-binding Protein dimerisation domain VAA049_486 PF00905 Penicillin binding protein transpeptidase domain VAA049_487 PF01225 Mur ligase family, catalytic domain VAA049_487 PF08245 Mur ligase middle domain VAA049_487 PF02875 Mur ligase family, glutamate ligase domain VAA049_488 PF02875 Mur ligase family, glutamate ligase domain VAA049_488 PF08245 Mur ligase middle domain VAA049_488 PF01225 Mur ligase family, catalytic domain VAA049_489 PF00953 Glycosyl transferase family 4 VAA049_489 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VAA049_490 PF02875 Mur ligase family, glutamate ligase domain VAA049_490 PF08245 Mur ligase middle domain VAA049_491 PF01098 Cell cycle protein VAA049_492 PF04101 Glycosyltransferase family 28 C-terminal domain VAA049_492 PF03033 Glycosyltransferase family 28 N-terminal domain VAA049_493 PF02875 Mur ligase family, glutamate ligase domain VAA049_493 PF01225 Mur ligase family, catalytic domain VAA049_493 PF08245 Mur ligase middle domain VAA049_494 PF08478 POTRA domain, FtsQ-type VAA049_494 PF03799 Cell division protein FtsQ VAA049_495 PF02491 SHS2 domain inserted in FTSA VAA049_496 PF12327 FtsZ family, C-terminal domain VAA049_496 PF00091 Tubulin/FtsZ family, GTPase domain VAA049_497 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VAA049_499 PF02810 SEC-C motif VAA049_499 PF01043 SecA preprotein cross-linking domain VAA049_499 PF07516 SecA Wing and Scaffold domain VAA049_499 PF07517 SecA DEAD-like domain VAA049_500 PF00293 NUDIX domain VAA049_501 PF05173 Dihydrodipicolinate reductase, C-terminus VAA049_501 PF01113 Dihydrodipicolinate reductase, N-terminus VAA049_502 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VAA049_502 PF00117 Glutamine amidotransferase class-I VAA049_503 PF02142 MGS-like domain VAA049_503 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VAA049_503 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VAA049_507 PF03466 LysR substrate binding domain VAA049_507 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_508 PF01925 Sulfite exporter TauE/SafE VAA049_509 PF03458 UPF0126 domain VAA049_510 PF01497 Periplasmic binding protein VAA049_512 PF01048 Phosphorylase superfamily VAA049_514 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VAA049_514 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_515 PF04898 Glutamate synthase central domain VAA049_515 PF00310 Glutamine amidotransferases class-II VAA049_515 PF01645 Conserved region in glutamate synthase VAA049_515 PF01493 GXGXG motif VAA049_516 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VAA049_516 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_517 PF01645 Conserved region in glutamate synthase VAA049_517 PF01493 GXGXG motif VAA049_517 PF04898 Glutamate synthase central domain VAA049_517 PF00310 Glutamine amidotransferases class-II VAA049_518 PF16199 Radical_SAM C-terminal domain VAA049_518 PF04055 Radical SAM superfamily VAA049_519 PF00990 Diguanylate cyclase, GGDEF domain VAA049_519 PF01590 GAF domain VAA049_519 PF00563 EAL domain VAA049_519 PF00360 Phytochrome region VAA049_52 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VAA049_520 PF18415 Histidine kinase receptor ArcB trans-membrane domain VAA049_520 PF01627 Hpt domain VAA049_520 PF00989 PAS fold VAA049_520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_520 PF00512 His Kinase A (phospho-acceptor) domain VAA049_520 PF00072 Response regulator receiver domain VAA049_521 PF00072 Response regulator receiver domain VAA049_521 PF00486 Transcriptional regulatory protein, C terminal VAA049_524 PF03737 Aldolase/RraA VAA049_525 PF13840 ACT domain VAA049_525 PF00742 Homoserine dehydrogenase VAA049_525 PF03447 Homoserine dehydrogenase, NAD binding domain VAA049_525 PF00696 Amino acid kinase family VAA049_525 PF01842 ACT domain VAA049_526 PF00288 GHMP kinases N terminal domain VAA049_526 PF08544 GHMP kinases C terminal VAA049_527 PF00291 Pyridoxal-phosphate dependent enzyme VAA049_527 PF14821 Threonine synthase N terminus VAA049_528 PF01228 Glycine radical VAA049_529 PF01261 Xylose isomerase-like TIM barrel VAA049_53 PF13667 ThiC-associated domain VAA049_53 PF01964 Radical SAM ThiC family VAA049_530 PF03167 Uracil DNA glycosylase superfamily VAA049_533 PF01235 Sodium:alanine symporter family VAA049_534 PF03883 Peroxide stress protein YaaA VAA049_536 PF01026 TatD related DNase VAA049_537 PF07662 Na+ dependent nucleoside transporter C-terminus VAA049_537 PF01773 Na+ dependent nucleoside transporter N-terminus VAA049_537 PF07670 Nucleoside recognition VAA049_538 PF01791 DeoC/LacD family aldolase VAA049_539 PF02885 Glycosyl transferase family, helical bundle domain VAA049_539 PF00591 Glycosyl transferase family, a/b domain VAA049_539 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VAA049_54 PF02581 Thiamine monophosphate synthase VAA049_540 PF01676 Metalloenzyme superfamily VAA049_541 PF01048 Phosphorylase superfamily VAA049_543 PF18429 Domain of unknown function (DUF5609) VAA049_545 PF18073 Rubredoxin metal binding domain VAA049_546 PF03144 Elongation factor Tu domain 2 VAA049_546 PF00009 Elongation factor Tu GTP binding domain VAA049_546 PF03764 Elongation factor G, domain IV VAA049_546 PF14492 Elongation Factor G, domain II VAA049_546 PF00679 Elongation factor G C-terminus VAA049_547 PF00501 AMP-binding enzyme VAA049_548 PF00072 Response regulator receiver domain VAA049_55 PF00899 ThiF family VAA049_550 PF00703 Glycosyl hydrolases family 2 VAA049_550 PF02929 Beta galactosidase small chain VAA049_550 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VAA049_550 PF02837 Glycosyl hydrolases family 2, sugar binding domain VAA049_550 PF16353 Domain of unknown function(DUF4981) VAA049_551 PF00356 Bacterial regulatory proteins, lacI family VAA049_553 PF01588 Putative tRNA binding domain VAA049_554 PF01544 CorA-like Mg2+ transporter protein VAA049_555 PF02080 TrkA-C domain VAA049_555 PF18030 RimK PreATP-grasp domain VAA049_555 PF08443 RimK-like ATP-grasp domain VAA049_557 PF00583 Acetyltransferase (GNAT) family VAA049_559 PF14602 Hexapeptide repeat of succinyl-transferase VAA049_559 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VAA049_56 PF02597 ThiS family VAA049_560 PF07130 YebG protein VAA049_563 PF17946 RecC C-terminal domain VAA049_565 PF00580 UvrD/REP helicase N-terminal domain VAA049_565 PF13361 UvrD-like helicase C-terminal domain VAA049_565 PF12705 PD-(D/E)XK nuclease superfamily VAA049_566 PF13538 UvrD-like helicase C-terminal domain VAA049_568 PF00583 Acetyltransferase (GNAT) family VAA049_568 PF00696 Amino acid kinase family VAA049_57 PF05690 Thiazole biosynthesis protein ThiG VAA049_570 PF03562 MltA specific insert domain VAA049_570 PF06725 3D domain VAA049_571 PF00899 ThiF family VAA049_572 PF02657 Fe-S metabolism associated domain VAA049_573 PF00266 Aminotransferase class-V VAA049_574 PF01965 DJ-1/PfpI family VAA049_575 PF08546 Ketopantoate reductase PanE/ApbA C terminal VAA049_575 PF02558 Ketopantoate reductase PanE/ApbA VAA049_576 PF03502 Nucleoside-specific channel-forming protein, Tsx VAA049_578 PF04542 Sigma-70 region 2 VAA049_578 PF04545 Sigma-70, region 4 VAA049_58 PF04055 Radical SAM superfamily VAA049_58 PF06968 Biotin and Thiamin Synthesis associated domain VAA049_580 PF07690 Major Facilitator Superfamily VAA049_581 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VAA049_583 PF05175 Methyltransferase small domain VAA049_584 PF01722 BolA-like protein VAA049_585 PF11973 NQRA C-terminal domain VAA049_585 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VAA049_586 PF03116 NQR2, RnfD, RnfE family VAA049_587 PF04205 FMN-binding domain VAA049_588 PF02508 Rnf-Nqr subunit, membrane protein VAA049_589 PF02508 Rnf-Nqr subunit, membrane protein VAA049_59 PF00557 Metallopeptidase family M24 VAA049_59 PF01321 Creatinase/Prolidase N-terminal domain VAA049_59 PF01321 Creatinase/Prolidase N-terminal domain VAA049_59 PF00557 Metallopeptidase family M24 VAA049_590 PF00111 2Fe-2S iron-sulfur cluster binding domain VAA049_590 PF00970 Oxidoreductase FAD-binding domain VAA049_590 PF00175 Oxidoreductase NAD-binding domain VAA049_591 PF02424 ApbE family VAA049_593 PF11798 IMS family HHH motif VAA049_593 PF00817 impB/mucB/samB family VAA049_595 PF17158 Membrane-associated sensor, integral membrane domain VAA049_595 PF00990 Diguanylate cyclase, GGDEF domain VAA049_596 PF00209 Sodium:neurotransmitter symporter family VAA049_598 PF08443 RimK-like ATP-grasp domain VAA049_598 PF18030 RimK PreATP-grasp domain VAA049_599 PF08443 RimK-like ATP-grasp domain VAA049_599 PF18030 RimK PreATP-grasp domain VAA049_60 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_60 PF03466 LysR substrate binding domain VAA049_600 PF07687 Peptidase dimerisation domain VAA049_600 PF01546 Peptidase family M20/M25/M40 VAA049_601 PF00860 Permease family VAA049_602 PF00156 Phosphoribosyl transferase domain VAA049_604 PF07417 Sigma factor-binding transcriptional regulator Crl VAA049_605 PF00696 Amino acid kinase family VAA049_605 PF01472 PUA domain VAA049_606 PF00171 Aldehyde dehydrogenase family VAA049_607 PF03477 ATP cone domain VAA049_608 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VAA049_608 PF01872 RibD C-terminal domain VAA049_609 PF00677 Lumazine binding domain VAA049_61 PF07690 Major Facilitator Superfamily VAA049_610 PF00925 GTP cyclohydrolase II VAA049_610 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VAA049_611 PF00885 6,7-dimethyl-8-ribityllumazine synthase VAA049_612 PF01029 NusB family VAA049_613 PF02769 AIR synthase related protein, C-terminal domain VAA049_613 PF00586 AIR synthase related protein, N-terminal domain VAA049_614 PF04608 Phosphatidylglycerophosphatase A VAA049_615 PF11944 Protein of unknown function (DUF3461) VAA049_616 PF08335 GlnD PII-uridylyltransferase VAA049_616 PF01966 HD domain VAA049_616 PF01909 Nucleotidyltransferase domain VAA049_617 PF00557 Metallopeptidase family M24 VAA049_618 PF00318 Ribosomal protein S2 VAA049_619 PF00889 Elongation factor TS VAA049_620 PF00696 Amino acid kinase family VAA049_621 PF01765 Ribosome recycling factor VAA049_622 PF01255 Putative undecaprenyl diphosphate synthase VAA049_624 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VAA049_624 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VAA049_624 PF13288 DXP reductoisomerase C-terminal domain VAA049_625 PF17820 PDZ domain VAA049_625 PF02163 Peptidase family M50 VAA049_626 PF07244 Surface antigen variable number repeat VAA049_626 PF01103 Surface antigen VAA049_627 PF03938 Outer membrane protein (OmpH-like) VAA049_628 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VAA049_628 PF00132 Bacterial transferase hexapeptide (six repeats) VAA049_629 PF07977 FabA-like domain VAA049_63 PF01037 Lrp/AsnC ligand binding domain VAA049_630 PF00132 Bacterial transferase hexapeptide (six repeats) VAA049_630 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VAA049_631 PF02684 Lipid-A-disaccharide synthetase VAA049_632 PF01351 Ribonuclease HII VAA049_633 PF14579 Helix-hairpin-helix motif VAA049_633 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VAA049_633 PF02811 PHP domain VAA049_633 PF01336 OB-fold nucleic acid binding domain VAA049_633 PF07733 Bacterial DNA polymerase III alpha NTPase domain VAA049_634 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VAA049_635 PF01171 PP-loop family VAA049_635 PF11734 TilS substrate C-terminal domain VAA049_635 PF09179 TilS substrate binding domain VAA049_636 PF00034 Cytochrome c VAA049_637 PF05870 Phenolic acid decarboxylase (PAD) VAA049_638 PF00543 Nitrogen regulatory protein P-II VAA049_639 PF03372 Endonuclease/Exonuclease/phosphatase family VAA049_64 PF00563 EAL domain VAA049_64 PF00990 Diguanylate cyclase, GGDEF domain VAA049_64 PF08448 PAS fold VAA049_640 PF01476 LysM domain VAA049_640 PF01464 Transglycosylase SLT domain VAA049_641 PF16123 Hydroxyacylglutathione hydrolase C-terminus VAA049_641 PF00753 Metallo-beta-lactamase superfamily VAA049_642 PF08241 Methyltransferase domain VAA049_643 PF00075 RNase H VAA049_644 PF00929 Exonuclease VAA049_646 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VAA049_646 PF09317 Domain of unknown function (DUF1974) VAA049_646 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VAA049_646 PF02770 Acyl-CoA dehydrogenase, middle domain VAA049_647 PF13580 SIS domain VAA049_648 PF13230 Glutamine amidotransferases class-II VAA049_649 PF00551 Formyl transferase VAA049_65 PF04445 Putative SAM-dependent methyltransferase VAA049_650 PF00586 AIR synthase related protein, N-terminal domain VAA049_650 PF02769 AIR synthase related protein, C-terminal domain VAA049_652 PF08448 PAS fold VAA049_652 PF00990 Diguanylate cyclase, GGDEF domain VAA049_653 PF01479 S4 domain VAA049_653 PF00849 RNA pseudouridylate synthase VAA049_654 PF01713 Smr domain VAA049_659 PF02838 Glycosyl hydrolase family 20, domain 2 VAA049_659 PF00728 Glycosyl hydrolase family 20, catalytic domain VAA049_659 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VAA049_659 PF03173 Putative carbohydrate binding domain VAA049_661 PF00403 Heavy-metal-associated domain VAA049_662 PF00749 tRNA synthetases class I (E and Q), catalytic domain VAA049_663 PF00691 OmpA family VAA049_663 PF01389 OmpA-like transmembrane domain VAA049_665 PF07715 TonB-dependent Receptor Plug Domain VAA049_666 PF04954 Siderophore-interacting protein VAA049_666 PF08021 Siderophore-interacting FAD-binding domain VAA049_667 PF00501 AMP-binding enzyme VAA049_667 PF00668 Condensation domain VAA049_667 PF00550 Phosphopantetheine attachment site VAA049_667 PF08242 Methyltransferase domain VAA049_67 PF00892 EamA-like transporter family VAA049_674 PF00072 Response regulator receiver domain VAA049_674 PF01584 CheW-like domain VAA049_675 PF01739 CheR methyltransferase, SAM binding domain VAA049_675 PF03705 CheR methyltransferase, all-alpha domain VAA049_676 PF00460 Flagella basal body rod protein VAA049_677 PF00460 Flagella basal body rod protein VAA049_677 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA049_678 PF13860 FlgD Ig-like domain VAA049_678 PF13861 FlgD Tudor-like domain VAA049_678 PF03963 Flagellar hook capping protein - N-terminal region VAA049_679 PF07559 Flagellar basal body protein FlaE VAA049_679 PF00460 Flagella basal body rod protein VAA049_679 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA049_68 PF00582 Universal stress protein family VAA049_680 PF00460 Flagella basal body rod protein VAA049_680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA049_681 PF00460 Flagella basal body rod protein VAA049_681 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA049_682 PF02107 Flagellar L-ring protein VAA049_683 PF02119 Flagellar P-ring protein VAA049_684 PF10135 Rod binding protein VAA049_684 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VAA049_685 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VAA049_685 PF07196 Flagellin hook IN motif VAA049_687 PF07196 Flagellin hook IN motif VAA049_687 PF00700 Bacterial flagellin C-terminal helical region VAA049_687 PF00669 Bacterial flagellin N-terminal helical region VAA049_688 PF00700 Bacterial flagellin C-terminal helical region VAA049_688 PF00669 Bacterial flagellin N-terminal helical region VAA049_688 PF07196 Flagellin hook IN motif VAA049_69 PF00210 Ferritin-like domain VAA049_7 PF00011 Hsp20/alpha crystallin family VAA049_70 PF10625 Universal stress protein B (UspB) VAA049_707 PF01926 50S ribosome-binding GTPase VAA049_707 PF06071 Protein of unknown function (DUF933) VAA049_708 PF01195 Peptidyl-tRNA hydrolase VAA049_709 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VAA049_709 PF14572 Phosphoribosyl synthetase-associated domain VAA049_710 PF00288 GHMP kinases N terminal domain VAA049_710 PF08544 GHMP kinases C terminal VAA049_711 PF03550 Outer membrane lipoprotein LolB VAA049_712 PF01488 Shikimate / quinate 5-dehydrogenase VAA049_712 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VAA049_712 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VAA049_713 PF03462 PCRF domain VAA049_713 PF00472 RF-1 domain VAA049_714 PF13847 Methyltransferase domain VAA049_714 PF17827 PrmC N-terminal domain VAA049_715 PF04247 Invasion gene expression up-regulator, SirB VAA049_716 PF13369 Transglutaminase-like superfamily VAA049_717 PF00793 DAHP synthetase I family VAA049_718 PF00149 Calcineurin-like phosphoesterase VAA049_718 PF02872 5'-nucleotidase, C-terminal domain VAA049_719 PF04073 Aminoacyl-tRNA editing domain VAA049_720 PF00860 Permease family VAA049_723 PF03358 NADPH-dependent FMN reductase VAA049_724 PF03960 ArsC family VAA049_725 PF13181 Tetratricopeptide repeat VAA049_725 PF01435 Peptidase family M48 VAA049_727 PF01594 AI-2E family transporter VAA049_728 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_728 PF02743 Cache domain VAA049_728 PF00672 HAMP domain VAA049_729 PF00578 AhpC/TSA family VAA049_73 PF02646 RmuC family VAA049_731 PF00701 Dihydrodipicolinate synthetase family VAA049_732 PF06804 NlpB/DapX lipoprotein VAA049_734 PF02557 D-alanyl-D-alanine carboxypeptidase VAA049_735 PF01546 Peptidase family M20/M25/M40 VAA049_735 PF07687 Peptidase dimerisation domain VAA049_736 PF03960 ArsC family VAA049_739 PF11143 Protein of unknown function (DUF2919) VAA049_74 PF01209 ubiE/COQ5 methyltransferase family VAA049_740 PF04261 Dyp-type peroxidase family VAA049_741 PF07196 Flagellin hook IN motif VAA049_741 PF00700 Bacterial flagellin C-terminal helical region VAA049_741 PF00669 Bacterial flagellin N-terminal helical region VAA049_742 PF00700 Bacterial flagellin C-terminal helical region VAA049_742 PF00669 Bacterial flagellin N-terminal helical region VAA049_742 PF07196 Flagellin hook IN motif VAA049_743 PF07196 Flagellin hook IN motif VAA049_743 PF00669 Bacterial flagellin N-terminal helical region VAA049_743 PF00700 Bacterial flagellin C-terminal helical region VAA049_744 PF03646 FlaG protein VAA049_745 PF07196 Flagellin hook IN motif VAA049_745 PF02465 Flagellar hook-associated protein 2 N-terminus VAA049_745 PF07195 Flagellar hook-associated protein 2 C-terminus VAA049_747 PF02561 Flagellar protein FliS VAA049_748 PF02954 Bacterial regulatory protein, Fis family VAA049_748 PF00158 Sigma-54 interaction domain VAA049_748 PF00072 Response regulator receiver domain VAA049_749 PF13426 PAS domain VAA049_749 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_749 PF00989 PAS fold VAA049_749 PF00512 His Kinase A (phospho-acceptor) domain VAA049_749 PF13493 Domain of unknown function (DUF4118) VAA049_749 PF08447 PAS fold VAA049_75 PF02036 SCP-2 sterol transfer family VAA049_750 PF00072 Response regulator receiver domain VAA049_750 PF00158 Sigma-54 interaction domain VAA049_750 PF02954 Bacterial regulatory protein, Fis family VAA049_751 PF02049 Flagellar hook-basal body complex protein FliE VAA049_752 PF01514 Secretory protein of YscJ/FliF family VAA049_752 PF08345 Flagellar M-ring protein C-terminal VAA049_753 PF14842 FliG N-terminal domain VAA049_753 PF14841 FliG middle domain VAA049_753 PF01706 FliG C-terminal domain VAA049_754 PF02108 Flagellar assembly protein FliH VAA049_755 PF18269 T3SS EscN ATPase C-terminal domain VAA049_755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VAA049_758 PF03748 Flagellar basal body-associated protein FliL VAA049_759 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VAA049_759 PF02154 Flagellar motor switch protein FliM VAA049_76 PF03109 ABC1 family VAA049_760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VAA049_761 PF04347 Flagellar biosynthesis protein, FliO VAA049_762 PF00813 FliP family VAA049_763 PF01313 Bacterial export proteins, family 3 VAA049_764 PF01311 Bacterial export proteins, family 1 VAA049_765 PF01312 FlhB HrpN YscU SpaS Family VAA049_766 PF01713 Smr domain VAA049_767 PF05175 Methyltransferase small domain VAA049_768 PF01264 Chorismate synthase VAA049_769 PF03458 UPF0126 domain VAA049_77 PF02416 mttA/Hcf106 family VAA049_770 PF04315 Elongation factor P hydroxylase VAA049_771 PF08891 YfcL protein VAA049_772 PF03358 NADPH-dependent FMN reductase VAA049_773 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VAA049_773 PF01266 FAD dependent oxidoreductase VAA049_774 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA049_774 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA049_775 PF11890 Domain of unknown function (DUF3410) VAA049_775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VAA049_775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VAA049_776 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA049_776 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA049_777 PF01475 Ferric uptake regulator family VAA049_779 PF03466 LysR substrate binding domain VAA049_779 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_78 PF02416 mttA/Hcf106 family VAA049_780 PF03788 LrgA family VAA049_781 PF04172 LrgB-like family VAA049_782 PF00258 Flavodoxin VAA049_784 PF12697 Alpha/beta hydrolase family VAA049_785 PF17206 SeqA protein N-terminal domain VAA049_785 PF03925 SeqA protein C-terminal domain VAA049_786 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VAA049_786 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VAA049_786 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VAA049_786 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VAA049_788 PF01784 NIF3 (NGG1p interacting factor 3) VAA049_789 PF00285 Citrate synthase, C-terminal domain VAA049_79 PF00902 Sec-independent protein translocase protein (TatC) VAA049_790 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VAA049_791 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VAA049_792 PF02910 Fumarate reductase flavoprotein C-term VAA049_792 PF00890 FAD binding domain VAA049_793 PF13085 2Fe-2S iron-sulfur cluster binding domain VAA049_794 PF16870 2-oxoglutarate dehydrogenase C-terminal VAA049_794 PF00676 Dehydrogenase E1 component VAA049_794 PF16078 2-oxoglutarate dehydrogenase N-terminus VAA049_794 PF02779 Transketolase, pyrimidine binding domain VAA049_795 PF00364 Biotin-requiring enzyme VAA049_795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VAA049_795 PF02817 e3 binding domain VAA049_796 PF08442 ATP-grasp domain VAA049_796 PF00549 CoA-ligase VAA049_797 PF00549 CoA-ligase VAA049_797 PF02629 CoA binding domain VAA049_798 PF00950 ABC 3 transport family VAA049_799 PF00005 ABC transporter VAA049_8 PF00155 Aminotransferase class I and II VAA049_80 PF00034 Cytochrome c VAA049_80 PF03150 Di-haem cytochrome c peroxidase VAA049_800 PF01297 Zinc-uptake complex component A periplasmic VAA049_801 PF02311 AraC-like ligand binding domain VAA049_801 PF12833 Helix-turn-helix domain VAA049_802 PF04023 FeoA domain VAA049_803 PF07670 Nucleoside recognition VAA049_803 PF07664 Ferrous iron transport protein B C terminus VAA049_803 PF02421 Ferrous iron transport protein B VAA049_806 PF05746 DALR anticodon binding domain VAA049_806 PF00750 tRNA synthetases class I (R) VAA049_806 PF03485 Arginyl tRNA synthetase N terminal domain VAA049_807 PF05193 Peptidase M16 inactive domain VAA049_807 PF00675 Insulinase (Peptidase family M16) VAA049_809 PF00300 Histidine phosphatase superfamily (branch 1) VAA049_81 PF01554 MatE VAA049_810 PF00771 FHIPEP family VAA049_811 PF00448 SRP54-type protein, GTPase domain VAA049_812 PF10609 NUBPL iron-transfer P-loop NTPase VAA049_813 PF04545 Sigma-70, region 4 VAA049_813 PF04542 Sigma-70 region 2 VAA049_813 PF04539 Sigma-70 region 3 VAA049_814 PF00072 Response regulator receiver domain VAA049_815 PF04344 Chemotaxis phosphatase, CheZ VAA049_816 PF01584 CheW-like domain VAA049_816 PF07194 P2 response regulator binding domain VAA049_816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_816 PF01627 Hpt domain VAA049_816 PF02895 Signal transducing histidine kinase, homodimeric domain VAA049_817 PF01339 CheB methylesterase VAA049_817 PF00072 Response regulator receiver domain VAA049_818 PF13614 AAA domain VAA049_820 PF01584 CheW-like domain VAA049_822 PF00005 ABC transporter VAA049_823 PF03379 CcmB protein VAA049_824 PF01578 Cytochrome C assembly protein VAA049_825 PF04995 Heme exporter protein D (CcmD) VAA049_826 PF03100 CcmE VAA049_827 PF01578 Cytochrome C assembly protein VAA049_827 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VAA049_828 PF08534 Redoxin VAA049_829 PF03918 Cytochrome C biogenesis protein VAA049_83 PF00717 Peptidase S24-like VAA049_83 PF01726 LexA DNA binding domain VAA049_831 PF04333 MlaA lipoprotein VAA049_834 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VAA049_834 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VAA049_835 PF00462 Glutaredoxin VAA049_836 PF01131 DNA topoisomerase VAA049_836 PF01751 Toprim domain VAA049_837 PF00850 Histone deacetylase domain VAA049_84 PF01553 Acyltransferase VAA049_840 PF00884 Sulfatase VAA049_840 PF11893 Domain of unknown function (DUF3413) VAA049_841 PF07208 Protein of unknown function (DUF1414) VAA049_842 PF04245 37-kD nucleoid-associated bacterial protein VAA049_844 PF03553 Na+/H+ antiporter family VAA049_845 PF01118 Semialdehyde dehydrogenase, NAD binding domain VAA049_845 PF02774 Semialdehyde dehydrogenase, dimerisation domain VAA049_846 PF01914 MarC family integral membrane protein VAA049_847 PF00171 Aldehyde dehydrogenase family VAA049_847 PF00465 Iron-containing alcohol dehydrogenase VAA049_849 PF00916 Sulfate permease family VAA049_849 PF01740 STAS domain VAA049_85 PF01040 UbiA prenyltransferase family VAA049_850 PF10150 Ribonuclease E/G family VAA049_850 PF12111 Polyribonucleotide phosphorylase C terminal VAA049_850 PF00575 S1 RNA binding domain VAA049_851 PF01479 S4 domain VAA049_851 PF00849 RNA pseudouridylate synthase VAA049_852 PF02545 Maf-like protein VAA049_853 PF02620 Large ribosomal RNA subunit accumulation protein YceD VAA049_854 PF01783 Ribosomal L32p protein family VAA049_855 PF02504 Fatty acid synthesis protein VAA049_856 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VAA049_856 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VAA049_857 PF00698 Acyl transferase domain VAA049_859 PF00550 Phosphopantetheine attachment site VAA049_86 PF04345 Chorismate lyase VAA049_860 PF02801 Beta-ketoacyl synthase, C-terminal domain VAA049_860 PF00109 Beta-ketoacyl synthase, N-terminal domain VAA049_861 PF01063 Amino-transferase class IV VAA049_862 PF02618 YceG-like family VAA049_863 PF02223 Thymidylate kinase VAA049_864 PF09115 DNA polymerase III, delta subunit, C terminal VAA049_865 PF01026 TatD related DNase VAA049_866 PF00367 phosphotransferase system, EIIB VAA049_866 PF02378 Phosphotransferase system, EIIC VAA049_868 PF00209 Sodium:neurotransmitter symporter family VAA049_87 PF03748 Flagellar basal body-associated protein FliL VAA049_871 PF01734 Patatin-like phospholipase VAA049_872 PF00224 Pyruvate kinase, barrel domain VAA049_872 PF02887 Pyruvate kinase, alpha/beta domain VAA049_873 PF00480 ROK family VAA049_874 PF01584 CheW-like domain VAA049_874 PF00072 Response regulator receiver domain VAA049_877 PF13847 Methyltransferase domain VAA049_879 PF01263 Aldose 1-epimerase VAA049_88 PF00672 HAMP domain VAA049_88 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_88 PF02203 Tar ligand binding domain homologue VAA049_880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VAA049_880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA049_881 PF01641 SelR domain VAA049_883 PF07023 Protein of unknown function (DUF1315) VAA049_884 PF17763 Glutaminase/Asparaginase C-terminal domain VAA049_884 PF00710 Asparaginase, N-terminal VAA049_885 PF01343 Peptidase family S49 VAA049_886 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_886 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VAA049_887 PF01842 ACT domain VAA049_887 PF00551 Formyl transferase VAA049_889 PF13307 Helicase C-terminal domain VAA049_889 PF04851 Type III restriction enzyme, res subunit VAA049_89 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VAA049_89 PF01694 Rhomboid family VAA049_890 PF00814 Glycoprotease family VAA049_893 PF00561 alpha/beta hydrolase fold VAA049_896 PF00570 HRDC domain VAA049_896 PF01612 3'-5' exonuclease VAA049_899 PF13286 Phosphohydrolase-associated domain VAA049_899 PF01966 HD domain VAA049_9 PF05746 DALR anticodon binding domain VAA049_9 PF02092 Glycyl-tRNA synthetase beta subunit VAA049_90 PF00581 Rhodanese-like domain VAA049_902 PF00155 Aminotransferase class I and II VAA049_903 PF00425 chorismate binding enzyme VAA049_904 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VAA049_904 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VAA049_904 PF16582 Middle domain of thiamine pyrophosphate VAA049_905 PF12697 Alpha/beta hydrolase family VAA049_906 PF00378 Enoyl-CoA hydratase/isomerase VAA049_907 PF13378 Enolase C-terminal domain-like VAA049_908 PF13193 AMP-binding enzyme C-terminal domain VAA049_908 PF00501 AMP-binding enzyme VAA049_909 PF03594 Benzoate membrane transport protein VAA049_91 PF01026 TatD related DNase VAA049_910 PF07883 Cupin domain VAA049_910 PF01381 Helix-turn-helix VAA049_911 PF12729 Four helix bundle sensory module for signal transduction VAA049_911 PF00672 HAMP domain VAA049_911 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_912 PF07690 Major Facilitator Superfamily VAA049_917 PF04170 NlpE N-terminal domain VAA049_918 PF03776 Septum formation topological specificity factor MinE VAA049_919 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VAA049_92 PF00490 Delta-aminolevulinic acid dehydratase VAA049_920 PF05209 Septum formation inhibitor MinC, N-terminal domain VAA049_920 PF03775 Septum formation inhibitor MinC, C-terminal domain VAA049_921 PF05166 YcgL domain VAA049_922 PF13406 Transglycosylase SLT domain VAA049_923 PF03466 LysR substrate binding domain VAA049_923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_924 PF07670 Nucleoside recognition VAA049_924 PF07662 Na+ dependent nucleoside transporter C-terminus VAA049_924 PF01773 Na+ dependent nucleoside transporter N-terminus VAA049_925 PF06483 Chitinase C VAA049_925 PF00704 Glycosyl hydrolases family 18 VAA049_926 PF03264 NapC/NirT cytochrome c family, N-terminal region VAA049_927 PF01568 Molydopterin dinucleotide binding domain VAA049_927 PF18364 Molybdopterin oxidoreductase N-terminal domain VAA049_927 PF00384 Molybdopterin oxidoreductase VAA049_930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_930 PF03466 LysR substrate binding domain VAA049_931 PF01494 FAD binding domain VAA049_932 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VAA049_933 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VAA049_933 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VAA049_94 PF01367 5'-3' exonuclease, C-terminal SAM fold VAA049_94 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VAA049_94 PF00476 DNA polymerase family A VAA049_94 PF01612 3'-5' exonuclease VAA049_943 PF00990 Diguanylate cyclase, GGDEF domain VAA049_943 PF00563 EAL domain VAA049_943 PF03707 Bacterial signalling protein N terminal repeat VAA049_943 PF13188 PAS domain VAA049_946 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VAA049_947 PF03480 Bacterial extracellular solute-binding protein, family 7 VAA049_948 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VAA049_949 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VAA049_95 PF01926 50S ribosome-binding GTPase VAA049_950 PF02954 Bacterial regulatory protein, Fis family VAA049_950 PF00072 Response regulator receiver domain VAA049_950 PF00158 Sigma-54 interaction domain VAA049_951 PF02743 Cache domain VAA049_951 PF00512 His Kinase A (phospho-acceptor) domain VAA049_951 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VAA049_952 PF05697 Bacterial trigger factor protein (TF) VAA049_952 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VAA049_952 PF05698 Bacterial trigger factor protein (TF) C-terminus VAA049_953 PF00574 Clp protease VAA049_954 PF06689 ClpX C4-type zinc finger VAA049_954 PF10431 C-terminal, D2-small domain, of ClpB protein VAA049_954 PF07724 AAA domain (Cdc48 subfamily) VAA049_955 PF00004 ATPase family associated with various cellular activities (AAA) VAA049_955 PF05362 Lon protease (S16) C-terminal proteolytic domain VAA049_955 PF02190 ATP-dependent protease La (LON) substrate-binding domain VAA049_956 PF00216 Bacterial DNA-binding protein VAA049_957 PF13145 PPIC-type PPIASE domain VAA049_959 PF02224 Cytidylate kinase VAA049_96 PF00034 Cytochrome c VAA049_960 PF00575 S1 RNA binding domain VAA049_961 PF00216 Bacterial DNA-binding protein VAA049_962 PF06305 Lipopolysaccharide assembly protein A domain VAA049_963 PF18073 Rubredoxin metal binding domain VAA049_964 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA049_965 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VAA049_967 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VAA049_967 PF03466 LysR substrate binding domain VAA049_969 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VAA049_969 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VAA049_970 PF01037 Lrp/AsnC ligand binding domain VAA049_971 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VAA049_971 PF17854 FtsK alpha domain VAA049_971 PF09397 Ftsk gamma domain VAA049_971 PF01580 FtsK/SpoIIIE family VAA049_972 PF02600 Disulfide bond formation protein DsbB VAA049_973 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VAA049_974 PF07840 FadR C-terminal domain VAA049_974 PF00392 Bacterial regulatory proteins, gntR family VAA049_976 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VAA049_976 PF00672 HAMP domain VAA049_977 PF01230 HIT domain VAA049_98 PF04220 Der GTPase activator (YihI) VAA049_980 PF13036 Peptidoglycan-synthase activator LpoB VAA049_980 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VAA049_982 PF05728 Uncharacterised protein family (UPF0227) VAA049_983 PF07992 Pyridine nucleotide-disulphide oxidoreductase VAA049_985 PF07968 Leukocidin/Hemolysin toxin family VAA049_985 PF16458 Beta-prism lectin VAA049_985 PF12563 Hemolytic toxin N terminal VAA049_987 PF02559 CarD-like/TRCF domain VAA049_987 PF03461 TRCF domain VAA049_987 PF17757 UvrB interaction domain VAA049_987 PF00271 Helicase conserved C-terminal domain VAA049_987 PF00270 DEAD/DEAH box helicase VAA049_989 PF02687 FtsX-like permease family VAA049_989 PF12704 MacB-like periplasmic core domain VAA049_99 PF10675 Protein of unknown function (DUF2489) VAA049_990 PF00005 ABC transporter VAA049_991 PF02687 FtsX-like permease family VAA049_991 PF12704 MacB-like periplasmic core domain VAA049_993 PF13567 Domain of unknown function (DUF4131) VAA049_993 PF00753 Metallo-beta-lactamase superfamily VAA049_993 PF03772 Competence protein VAA049_994 PF00005 ABC transporter VAA049_994 PF00664 ABC transporter transmembrane region VAA049_995 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VAA049_996 PF03966 Trm112p-like protein VAA049_997 PF02348 Cytidylyltransferase VAA049_998 PF04293 SpoVR like protein VAA049_999 PF04285 Protein of unknown function (DUF444)