VAA049_1 SM00382 ATPases associated with a variety of cellular activities VAA049_1 SM00760 Bacterial dnaA protein helix-turn-helix domain VAA049_100 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_1000 SM00763 PrkA AAA domain VAA049_1004 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1004 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1009 SM00382 ATPases associated with a variety of cellular activities VAA049_1010 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_1010 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VAA049_1014 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1014 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1018 SM00491 VAA049_1018 VAA049_1023 SM00052 Putative diguanylate phosphodiesterase VAA049_1026 SM00840 VAA049_1026 VAA049_1028 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VAA049_1029 SM00382 ATPases associated with a variety of cellular activities VAA049_1042 SM00387 Histidine kinase-like ATPases VAA049_1042 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1042 SM00448 cheY-homologous receiver domain VAA049_1047 SM00342 helix_turn_helix, arabinose operon control protein VAA049_1053 SM00382 ATPases associated with a variety of cellular activities VAA049_106 SM01219 VAA049_106 VAA049_1073 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_1078 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VAA049_1078 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VAA049_1078 SM00493 VAA049_1078 VAA049_1085 SM00354 helix_turn _helix lactose operon repressor VAA049_1087 SM00448 cheY-homologous receiver domain VAA049_1087 SM00862 Transcriptional regulatory protein, C terminal VAA049_1093 SM00344 helix_turn_helix ASNC type VAA049_1095 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_1096 SM00052 Putative diguanylate phosphodiesterase VAA049_1096 SM00091 PAS domain VAA049_1116 SM01131 VAA049_1116 VAA049_1119 SM00382 ATPases associated with a variety of cellular activities VAA049_112 SM00052 Putative diguanylate phosphodiesterase VAA049_112 SM00267 diguanylate cyclase VAA049_112 SM00897 FIST N domain VAA049_112 SM01204 VAA049_112 VAA049_1120 SM00382 ATPases associated with a variety of cellular activities VAA049_1124 SM00382 ATPases associated with a variety of cellular activities VAA049_113 SM01144 VAA049_113 VAA049_1133 SM00155 Phospholipase D. Active site motifs. VAA049_1137 SM00382 ATPases associated with a variety of cellular activities VAA049_1144 SM00382 ATPases associated with a variety of cellular activities VAA049_1149 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_1150 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_1150 SM00073 Histidine Phosphotransfer domain VAA049_1150 SM00387 Histidine kinase-like ATPases VAA049_1150 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1150 SM00448 cheY-homologous receiver domain VAA049_1150 SM00918 Ligated ion channel L-glutamate- and glycine-binding site VAA049_1151 SM00052 Putative diguanylate phosphodiesterase VAA049_1151 SM00421 helix_turn_helix, Lux Regulon VAA049_1151 SM00448 cheY-homologous receiver domain VAA049_1152 SM00448 cheY-homologous receiver domain VAA049_1154 SM00020 Trypsin-like serine protease VAA049_1161 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1161 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1163 SM00052 Putative diguanylate phosphodiesterase VAA049_1165 SM00387 Histidine kinase-like ATPases VAA049_1166 SM00448 cheY-homologous receiver domain VAA049_1166 SM00862 Transcriptional regulatory protein, C terminal VAA049_1168 SM00487 DEAD-like helicases superfamily VAA049_1168 SM00490 helicase superfamily c-terminal domain VAA049_1169 SM00363 S4 RNA-binding domain VAA049_1174 SM00382 ATPases associated with a variety of cellular activities VAA049_1183 SM00112 Cadherin repeats. VAA049_1184 SM00112 Cadherin repeats. VAA049_1192 SM00028 Tetratricopeptide repeats VAA049_1192 SM00386 HAT (Half-A-TPR) repeats VAA049_1200 SM00387 Histidine kinase-like ATPases VAA049_1201 SM00448 cheY-homologous receiver domain VAA049_1203 SM00260 Two component signalling adaptor domain VAA049_1203 SM00448 cheY-homologous receiver domain VAA049_1206 SM00267 diguanylate cyclase VAA049_1214 SM00267 diguanylate cyclase VAA049_1215 SM00052 Putative diguanylate phosphodiesterase VAA049_1216 SM00822 VAA049_1216 VAA049_1226 SM01022 VAA049_1226 VAA049_1233 SM00382 ATPases associated with a variety of cellular activities VAA049_1238 SM00849 Metallo-beta-lactamase superfamily VAA049_1242 SM00354 helix_turn _helix lactose operon repressor VAA049_1246 SM00420 helix_turn_helix, Deoxyribose operon repressor VAA049_1246 SM01134 VAA049_1246 VAA049_1247 SM00382 ATPases associated with a variety of cellular activities VAA049_125 SM00382 ATPases associated with a variety of cellular activities VAA049_125 SM00962 SRP54-type protein, GTPase domain VAA049_125 SM00963 SRP54-type protein, helical bundle domain VAA049_126 SM00382 ATPases associated with a variety of cellular activities VAA049_1264 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1266 SM01144 VAA049_1266 VAA049_1270 SM00852 Probable molybdopterin binding domain VAA049_1272 SM00382 ATPases associated with a variety of cellular activities VAA049_1275 SM00382 ATPases associated with a variety of cellular activities VAA049_1275 SM00448 cheY-homologous receiver domain VAA049_1276 SM00387 Histidine kinase-like ATPases VAA049_1276 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1277 SM00382 ATPases associated with a variety of cellular activities VAA049_1284 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VAA049_1293 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_1297 SM00382 ATPases associated with a variety of cellular activities VAA049_1299 SM00945 ProQ/FINO family VAA049_1300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VAA049_1300 SM00245 tail specific protease VAA049_1306 SM00981 VAA049_1306 VAA049_1308 SM00382 ATPases associated with a variety of cellular activities VAA049_1320 SM00530 Helix-turn-helix XRE-family like proteins VAA049_1328 SM00530 Helix-turn-helix XRE-family like proteins VAA049_135 SM00360 RNA recognition motif VAA049_1359 SM00382 ATPases associated with a variety of cellular activities VAA049_1361 SM00382 ATPases associated with a variety of cellular activities VAA049_1362 SM00387 Histidine kinase-like ATPases VAA049_1362 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1362 SM00448 cheY-homologous receiver domain VAA049_1363 SM00897 FIST N domain VAA049_1363 SM01204 VAA049_1363 VAA049_1373 SM00100 Cyclic nucleotide-monophosphate binding domain VAA049_1373 SM00419 helix_turn_helix, cAMP Regulatory protein VAA049_1379 SM00382 ATPases associated with a variety of cellular activities VAA049_1394 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1394 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1399 SM00487 DEAD-like helicases superfamily VAA049_1399 SM00490 helicase superfamily c-terminal domain VAA049_1400 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VAA049_1400 SM00091 PAS domain VAA049_1400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1401 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1401 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1402 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1403 SM00260 Two component signalling adaptor domain VAA049_1404 SM00448 cheY-homologous receiver domain VAA049_1406 SM00138 Methyltransferase, chemotaxis proteins VAA049_1407 SM00448 cheY-homologous receiver domain VAA049_1408 SM00073 Histidine Phosphotransfer domain VAA049_1408 SM00260 Two component signalling adaptor domain VAA049_1408 SM00387 Histidine kinase-like ATPases VAA049_1408 SM01231 VAA049_1408 VAA049_1410 SM00448 cheY-homologous receiver domain VAA049_1411 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1419 SM00382 ATPases associated with a variety of cellular activities VAA049_1419 SM00487 DEAD-like helicases superfamily VAA049_1419 SM00490 helicase superfamily c-terminal domain VAA049_1419 SM00847 Helicase associated domain (HA2) Add an annotation VAA049_1423 SM00479 VAA049_1423 VAA049_1424 SM00267 diguanylate cyclase VAA049_1424 SM01079 VAA049_1424 VAA049_1428 SM00267 diguanylate cyclase VAA049_1430 SM00267 diguanylate cyclase VAA049_1434 SM00028 Tetratricopeptide repeats VAA049_1434 SM00267 diguanylate cyclase VAA049_1439 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_1442 SM00382 ATPases associated with a variety of cellular activities VAA049_1446 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VAA049_1447 SM00267 diguanylate cyclase VAA049_1449 SM00073 Histidine Phosphotransfer domain VAA049_1449 SM00091 PAS domain VAA049_1449 SM00387 Histidine kinase-like ATPases VAA049_1449 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1449 SM00448 cheY-homologous receiver domain VAA049_1451 SM00448 cheY-homologous receiver domain VAA049_1451 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_1463 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA049_1463 SM00895 VAA049_1463 VAA049_1470 SM00382 ATPases associated with a variety of cellular activities VAA049_1475 SM00448 cheY-homologous receiver domain VAA049_1475 SM00862 Transcriptional regulatory protein, C terminal VAA049_1476 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1476 SM00387 Histidine kinase-like ATPases VAA049_1476 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1479 SM00448 cheY-homologous receiver domain VAA049_1480 SM00387 Histidine kinase-like ATPases VAA049_1482 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1482 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1483 SM01005 Alanine racemase, C-terminal domain VAA049_1487 SM00091 PAS domain VAA049_1487 SM00382 ATPases associated with a variety of cellular activities VAA049_1497 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1497 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_15 SM00829 Enoylreductase VAA049_150 SM00052 Putative diguanylate phosphodiesterase VAA049_150 SM00267 diguanylate cyclase VAA049_1500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_1502 SM00100 Cyclic nucleotide-monophosphate binding domain VAA049_1502 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_1503 SM00479 VAA049_1503 VAA049_1504 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1504 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1507 SM00354 helix_turn _helix lactose operon repressor VAA049_151 SM00382 ATPases associated with a variety of cellular activities VAA049_151 SM00448 cheY-homologous receiver domain VAA049_1513 SM00495 Chitin-binding domain type 3 VAA049_1515 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA049_1516 SM00421 helix_turn_helix, Lux Regulon VAA049_1516 SM00448 cheY-homologous receiver domain VAA049_1517 SM00387 Histidine kinase-like ATPases VAA049_1517 SM01049 VAA049_1517 VAA049_152 SM00091 PAS domain VAA049_152 SM00387 Histidine kinase-like ATPases VAA049_152 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1522 SM00849 Metallo-beta-lactamase superfamily VAA049_1533 SM00342 helix_turn_helix, arabinose operon control protein VAA049_1534 SM00450 Rhodanese Homology Domain VAA049_1535 SM00434 DNA Topoisomerase IV VAA049_154 SM01230 VAA049_154 VAA049_1541 SM00852 Probable molybdopterin binding domain VAA049_1544 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1544 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1544 SM01049 VAA049_1544 VAA049_1548 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_1590 SM01022 VAA049_1590 VAA049_1598 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VAA049_1639 SM00530 Helix-turn-helix XRE-family like proteins VAA049_164 SM00363 S4 RNA-binding domain VAA049_1649 SM00530 Helix-turn-helix XRE-family like proteins VAA049_1653 SM01057 Eukaryotic-type carbonic anhydrase VAA049_1656 SM00936 Penicillin-binding protein 5, C-terminal domain VAA049_1658 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1658 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1660 SM00422 helix_turn_helix, mercury resistance VAA049_1665 SM00387 Histidine kinase-like ATPases VAA049_1665 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1666 SM00448 cheY-homologous receiver domain VAA049_1666 SM00862 Transcriptional regulatory protein, C terminal VAA049_167 SM00382 ATPases associated with a variety of cellular activities VAA049_1671 SM00642 Alpha-amylase domain VAA049_1674 SM00420 helix_turn_helix, Deoxyribose operon repressor VAA049_1674 SM01134 VAA049_1674 VAA049_1677 SM01007 Class II Aldolase and Adducin N-terminal domain VAA049_1679 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA049_1682 SM00448 cheY-homologous receiver domain VAA049_1682 SM00862 Transcriptional regulatory protein, C terminal VAA049_1683 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1683 SM00387 Histidine kinase-like ATPases VAA049_1683 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1689 SM00342 helix_turn_helix, arabinose operon control protein VAA049_1690 SM00382 ATPases associated with a variety of cellular activities VAA049_1698 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VAA049_1701 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1701 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1702 SM00458 Ricin-type beta-trefoil VAA049_1705 SM00267 diguanylate cyclase VAA049_1709 SM00387 Histidine kinase-like ATPases VAA049_1710 SM00448 cheY-homologous receiver domain VAA049_1710 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_1714 SM00487 DEAD-like helicases superfamily VAA049_1714 SM00490 helicase superfamily c-terminal domain VAA049_1721 SM01240 VAA049_1721 VAA049_1728 SM00448 cheY-homologous receiver domain VAA049_1732 SM00357 Cold shock protein domain VAA049_1735 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VAA049_1735 SM00382 ATPases associated with a variety of cellular activities VAA049_1740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1744 SM00327 von Willebrand factor (vWF) type A domain VAA049_1745 SM00028 Tetratricopeptide repeats VAA049_1748 SM00357 Cold shock protein domain VAA049_1749 SM00267 diguanylate cyclase VAA049_1769 SM00382 ATPases associated with a variety of cellular activities VAA049_1769 SM00448 cheY-homologous receiver domain VAA049_1770 SM00091 PAS domain VAA049_1770 SM00387 Histidine kinase-like ATPases VAA049_1770 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1771 SM00495 Chitin-binding domain type 3 VAA049_1776 SM00267 diguanylate cyclase VAA049_1777 SM00354 helix_turn _helix lactose operon repressor VAA049_1781 SM00382 ATPases associated with a variety of cellular activities VAA049_1791 SM00382 ATPases associated with a variety of cellular activities VAA049_1792 SM00382 ATPases associated with a variety of cellular activities VAA049_1792 SM01086 C-terminal, D2-small domain, of ClpB protein VAA049_1807 SM00052 Putative diguanylate phosphodiesterase VAA049_1808 SM00450 Rhodanese Homology Domain VAA049_1822 SM00422 helix_turn_helix, mercury resistance VAA049_1826 SM00052 Putative diguanylate phosphodiesterase VAA049_1826 SM00267 diguanylate cyclase VAA049_183 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_183 SM00732 Likely ribonuclease with RNase H fold. VAA049_1832 SM00267 diguanylate cyclase VAA049_1833 SM00382 ATPases associated with a variety of cellular activities VAA049_1837 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1837 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1843 SM00487 DEAD-like helicases superfamily VAA049_1843 SM00490 helicase superfamily c-terminal domain VAA049_1845 SM00257 Lysin motif VAA049_1847 SM00422 helix_turn_helix, mercury resistance VAA049_185 SM00421 helix_turn_helix, Lux Regulon VAA049_1851 SM00028 Tetratricopeptide repeats VAA049_1852 SM00267 diguanylate cyclase VAA049_1855 SM00245 tail specific protease VAA049_1864 SM00014 Acid phosphatase homologues VAA049_1868 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1868 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_187 SM00382 ATPases associated with a variety of cellular activities VAA049_1871 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VAA049_1871 SM00495 Chitin-binding domain type 3 VAA049_1871 SM00636 VAA049_1871 VAA049_1882 SM00642 Alpha-amylase domain VAA049_1885 SM00421 helix_turn_helix, Lux Regulon VAA049_1887 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1887 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1887 SM01049 VAA049_1887 VAA049_1895 SM00470 ParB-like nuclease domain VAA049_190 SM00495 Chitin-binding domain type 3 VAA049_1900 SM01236 VAA049_1900 VAA049_1901 SM00822 VAA049_1901 VAA049_1903 SM00448 cheY-homologous receiver domain VAA049_1903 SM00862 Transcriptional regulatory protein, C terminal VAA049_1904 SM00387 Histidine kinase-like ATPases VAA049_1904 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1906 SM00382 ATPases associated with a variety of cellular activities VAA049_1911 SM00448 cheY-homologous receiver domain VAA049_1912 SM00073 Histidine Phosphotransfer domain VAA049_1912 SM00260 Two component signalling adaptor domain VAA049_1912 SM00387 Histidine kinase-like ATPases VAA049_1912 SM01231 VAA049_1912 VAA049_1913 SM00260 Two component signalling adaptor domain VAA049_1914 SM00260 Two component signalling adaptor domain VAA049_1915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1916 SM00138 Methyltransferase, chemotaxis proteins VAA049_1918 SM00448 cheY-homologous receiver domain VAA049_1919 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_192 SM00448 cheY-homologous receiver domain VAA049_192 SM00862 Transcriptional regulatory protein, C terminal VAA049_1921 SM00331 Sigma factor PP2C-like phosphatases VAA049_1921 SM00448 cheY-homologous receiver domain VAA049_1923 SM00382 ATPases associated with a variety of cellular activities VAA049_1924 SM00052 Putative diguanylate phosphodiesterase VAA049_1924 SM00267 diguanylate cyclase VAA049_1928 SM00421 helix_turn_helix, Lux Regulon VAA049_193 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_193 SM00387 Histidine kinase-like ATPases VAA049_193 SM00388 His Kinase A (phosphoacceptor) domain VAA049_1931 SM00342 helix_turn_helix, arabinose operon control protein VAA049_1936 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1936 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1937 SM00344 helix_turn_helix ASNC type VAA049_1945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1948 SM00342 helix_turn_helix, arabinose operon control protein VAA049_195 SM00487 DEAD-like helicases superfamily VAA049_195 SM00490 helicase superfamily c-terminal domain VAA049_1950 SM00450 Rhodanese Homology Domain VAA049_1951 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA049_196 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_196 SM00954 Region found in RelA / SpoT proteins VAA049_1962 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_1964 SM00382 ATPases associated with a variety of cellular activities VAA049_1967 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1967 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_197 SM01409 VAA049_197 VAA049_1970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_1970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_1972 SM00642 Alpha-amylase domain VAA049_1975 SM00671 Sel1-like repeats. VAA049_1978 SM01154 VAA049_1978 VAA049_198 SM00072 Guanylate kinase homologues. VAA049_1982 SM00342 helix_turn_helix, arabinose operon control protein VAA049_1982 SM01009 AlkA N-terminal domain VAA049_1986 SM00091 PAS domain VAA049_1986 SM00387 Histidine kinase-like ATPases VAA049_1988 SM00448 cheY-homologous receiver domain VAA049_1995 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA049_1999 SM00342 helix_turn_helix, arabinose operon control protein VAA049_2 SM00480 DNA polymerase III beta subunit VAA049_2004 SM00382 ATPases associated with a variety of cellular activities VAA049_2006 SM00487 DEAD-like helicases superfamily VAA049_2006 SM00490 helicase superfamily c-terminal domain VAA049_2008 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2016 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2017 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_2018 SM00382 ATPases associated with a variety of cellular activities VAA049_202 SM01091 Transporter associated domain VAA049_2021 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2021 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2028 SM00267 diguanylate cyclase VAA049_203 SM00421 helix_turn_helix, Lux Regulon VAA049_203 SM00448 cheY-homologous receiver domain VAA049_2033 SM00267 diguanylate cyclase VAA049_2033 SM01079 VAA049_2033 VAA049_2036 SM00267 diguanylate cyclase VAA049_2037 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA049_2038 SM00260 Two component signalling adaptor domain VAA049_2038 SM00448 cheY-homologous receiver domain VAA049_2040 SM00421 helix_turn_helix, Lux Regulon VAA049_2042 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VAA049_2045 SM00382 ATPases associated with a variety of cellular activities VAA049_2051 SM00420 helix_turn_helix, Deoxyribose operon repressor VAA049_2051 SM01134 VAA049_2051 VAA049_2052 SM00091 PAS domain VAA049_2052 SM00267 diguanylate cyclase VAA049_2055 SM00342 helix_turn_helix, arabinose operon control protein VAA049_2057 SM00357 Cold shock protein domain VAA049_2059 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_2064 SM00342 helix_turn_helix, arabinose operon control protein VAA049_2067 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2067 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2073 SM00382 ATPases associated with a variety of cellular activities VAA049_2079 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_208 SM00267 diguanylate cyclase VAA049_2082 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2082 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2088 SM00849 Metallo-beta-lactamase superfamily VAA049_2090 SM01350 VAA049_2090 VAA049_2093 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_2094 SM00481 DNA polymerase alpha chain like domain VAA049_21 SM00382 ATPases associated with a variety of cellular activities VAA049_2102 SM00829 Enoylreductase VAA049_2118 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA049_212 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_212 SM00387 Histidine kinase-like ATPases VAA049_212 SM00388 His Kinase A (phosphoacceptor) domain VAA049_2124 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VAA049_2124 SM00091 PAS domain VAA049_2124 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2127 SM00642 Alpha-amylase domain VAA049_213 SM00448 cheY-homologous receiver domain VAA049_213 SM00862 Transcriptional regulatory protein, C terminal VAA049_2130 SM00267 diguanylate cyclase VAA049_2134 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA049_2137 SM01091 Transporter associated domain VAA049_2138 SM01266 VAA049_2138 VAA049_2154 SM00883 Chaperonin 10 Kd subunit VAA049_2155 SM00924 MgtE intracellular N domain VAA049_2166 SM00357 Cold shock protein domain VAA049_2166 SM00955 VAA049_2166 VAA049_2167 SM00487 DEAD-like helicases superfamily VAA049_2167 SM00490 helicase superfamily c-terminal domain VAA049_2168 SM00020 Trypsin-like serine protease VAA049_2177 SM00271 DnaJ molecular chaperone homology domain VAA049_2179 SM00052 Putative diguanylate phosphodiesterase VAA049_2179 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VAA049_2179 SM00267 diguanylate cyclase VAA049_2182 SM00382 ATPases associated with a variety of cellular activities VAA049_2184 SM00984 UDP binding domain VAA049_2186 SM00797 Allophanate hydrolase subunit 2 VAA049_2187 SM00796 Allophanate hydrolase subunit 1 VAA049_2190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2194 SM00487 DEAD-like helicases superfamily VAA049_2194 SM00490 helicase superfamily c-terminal domain VAA049_2199 SM00382 ATPases associated with a variety of cellular activities VAA049_22 SM00563 Phosphate acyltransferases VAA049_2200 SM00327 von Willebrand factor (vWF) type A domain VAA049_2202 SM00382 ATPases associated with a variety of cellular activities VAA049_2203 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_2203 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VAA049_2219 SM00387 Histidine kinase-like ATPases VAA049_2219 SM00388 His Kinase A (phosphoacceptor) domain VAA049_2219 SM00448 cheY-homologous receiver domain VAA049_2227 SM00382 ATPases associated with a variety of cellular activities VAA049_223 SM00919 Malic enzyme, NAD binding domain VAA049_223 SM01274 VAA049_223 VAA049_2231 SM00989 VAA049_2231 VAA049_2232 SM00387 Histidine kinase-like ATPases VAA049_2239 SM00851 MGS-like domain VAA049_2241 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2241 SM00387 Histidine kinase-like ATPases VAA049_2241 SM00388 His Kinase A (phosphoacceptor) domain VAA049_2241 SM00448 cheY-homologous receiver domain VAA049_2246 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2246 SM00387 Histidine kinase-like ATPases VAA049_2246 SM00388 His Kinase A (phosphoacceptor) domain VAA049_2248 SM00448 cheY-homologous receiver domain VAA049_225 SM00487 DEAD-like helicases superfamily VAA049_225 SM00490 helicase superfamily c-terminal domain VAA049_2250 SM00495 Chitin-binding domain type 3 VAA049_2250 SM00636 VAA049_2250 VAA049_2252 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VAA049_2252 SM00267 diguanylate cyclase VAA049_2257 SM00822 VAA049_2257 VAA049_226 SM00354 helix_turn _helix lactose operon repressor VAA049_2261 SM00382 ATPases associated with a variety of cellular activities VAA049_2265 SM00387 Histidine kinase-like ATPases VAA049_2266 SM00421 helix_turn_helix, Lux Regulon VAA049_2266 SM00448 cheY-homologous receiver domain VAA049_2267 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_2271 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VAA049_2274 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2274 SM00387 Histidine kinase-like ATPases VAA049_2275 SM00421 helix_turn_helix, Lux Regulon VAA049_2275 SM00448 cheY-homologous receiver domain VAA049_2278 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2278 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2282 SM00091 PAS domain VAA049_2282 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_2285 SM00640 Glycosyl hydrolases family 32 VAA049_2286 SM00354 helix_turn _helix lactose operon repressor VAA049_229 SM00382 ATPases associated with a variety of cellular activities VAA049_229 SM01086 C-terminal, D2-small domain, of ClpB protein VAA049_2294 SM00563 Phosphate acyltransferases VAA049_2296 SM00450 Rhodanese Homology Domain VAA049_2298 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VAA049_2316 SM00861 Transketolase, pyrimidine binding domain VAA049_2319 SM00636 VAA049_2319 VAA049_2320 SM00450 Rhodanese Homology Domain VAA049_2323 SM00852 Probable molybdopterin binding domain VAA049_2336 SM00382 ATPases associated with a variety of cellular activities VAA049_2338 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA049_2338 SM00866 VAA049_2338 VAA049_2348 SM00382 ATPases associated with a variety of cellular activities VAA049_2361 SM00881 CoA binding domain VAA049_238 SM00883 Chaperonin 10 Kd subunit VAA049_2380 SM00448 cheY-homologous receiver domain VAA049_2380 SM00862 Transcriptional regulatory protein, C terminal VAA049_2381 SM00387 Histidine kinase-like ATPases VAA049_2381 SM00388 His Kinase A (phosphoacceptor) domain VAA049_2383 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VAA049_2383 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VAA049_2387 SM00267 diguanylate cyclase VAA049_2390 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_2390 SM00267 diguanylate cyclase VAA049_2396 SM00782 PhnA Zinc-Ribbon VAA049_2404 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_2405 SM00867 YceI-like domain VAA049_2408 SM00052 Putative diguanylate phosphodiesterase VAA049_2412 SM00448 cheY-homologous receiver domain VAA049_2412 SM00862 Transcriptional regulatory protein, C terminal VAA049_2413 SM00387 Histidine kinase-like ATPases VAA049_2413 SM00388 His Kinase A (phosphoacceptor) domain VAA049_2414 SM00890 Domain of unknown function VAA049_2417 SM00833 Cobalamin synthesis protein cobW C-terminal domain VAA049_242 SM00841 Elongation factor P, C-terminal VAA049_242 SM01185 VAA049_242 VAA049_2421 SM00387 Histidine kinase-like ATPases VAA049_2421 SM00448 cheY-homologous receiver domain VAA049_2424 SM00354 helix_turn _helix lactose operon repressor VAA049_2435 SM00886 Stress responsive A/B Barrel Domain VAA049_2437 SM00953 VAA049_2437 VAA049_2447 SM00871 Bacterial transcription activator, effector binding domain VAA049_2462 SM01022 VAA049_2462 VAA049_2464 SM00901 VAA049_2464 VAA049_2474 SM01266 VAA049_2474 VAA049_248 SM00450 Rhodanese Homology Domain VAA049_2501 SM00382 ATPases associated with a variety of cellular activities VAA049_2504 SM00855 Phosphoglycerate mutase family VAA049_251 SM00971 Serine acetyltransferase, N-terminal VAA049_2519 SM00411 bacterial (prokaryotic) histone like domain VAA049_2520 SM00873 B3/4 domain VAA049_2520 SM00874 tRNA synthetase B5 domain VAA049_2520 SM00896 Ferredoxin-fold anticodon binding domain VAA049_2522 SM00267 diguanylate cyclase VAA049_2529 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VAA049_2529 SM00465 GIY-YIG type nucleases (URI domain) VAA049_2530 SM00421 helix_turn_helix, Lux Regulon VAA049_2530 SM00448 cheY-homologous receiver domain VAA049_2531 SM00052 Putative diguanylate phosphodiesterase VAA049_2532 SM00486 DNA polymerase type-B family VAA049_2534 SM00841 Elongation factor P, C-terminal VAA049_2534 SM01185 VAA049_2534 VAA049_2537 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA049_2537 SM00866 VAA049_2537 VAA049_2543 SM00020 Trypsin-like serine protease VAA049_2549 SM00271 DnaJ molecular chaperone homology domain VAA049_2549 SM00671 Sel1-like repeats. VAA049_255 SM00859 Semialdehyde dehydrogenase, NAD binding domain VAA049_2554 SM00919 Malic enzyme, NAD binding domain VAA049_2554 SM01274 VAA049_2554 VAA049_2557 SM00267 diguanylate cyclase VAA049_2561 SM00382 ATPases associated with a variety of cellular activities VAA049_2562 SM00382 ATPases associated with a variety of cellular activities VAA049_2563 SM00363 S4 RNA-binding domain VAA049_2565 SM00481 DNA polymerase alpha chain like domain VAA049_2583 SM00387 Histidine kinase-like ATPases VAA049_2584 SM00448 cheY-homologous receiver domain VAA049_2595 SM00382 ATPases associated with a variety of cellular activities VAA049_2595 SM01086 C-terminal, D2-small domain, of ClpB protein VAA049_2597 SM00357 Cold shock protein domain VAA049_2609 SM00528 Domain in histone-like proteins of HNS family VAA049_2627 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_2627 SM00876 Biotin and Thiamin Synthesis associated domain VAA049_2630 SM00382 ATPases associated with a variety of cellular activities VAA049_2634 SM00267 diguanylate cyclase VAA049_2635 SM00382 ATPases associated with a variety of cellular activities VAA049_2645 SM00382 ATPases associated with a variety of cellular activities VAA049_2650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_2650 SM00387 Histidine kinase-like ATPases VAA049_2651 SM00448 cheY-homologous receiver domain VAA049_2652 SM00052 Putative diguanylate phosphodiesterase VAA049_2652 SM00448 cheY-homologous receiver domain VAA049_2653 SM00387 Histidine kinase-like ATPases VAA049_2654 SM00387 Histidine kinase-like ATPases VAA049_2654 SM00388 His Kinase A (phosphoacceptor) domain VAA049_2656 SM00448 cheY-homologous receiver domain VAA049_2657 SM00448 cheY-homologous receiver domain VAA049_2661 SM00342 helix_turn_helix, arabinose operon control protein VAA049_2664 SM00495 Chitin-binding domain type 3 VAA049_2664 SM00636 VAA049_2664 VAA049_2667 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA049_2668 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VAA049_2673 SM00448 cheY-homologous receiver domain VAA049_2673 SM00862 Transcriptional regulatory protein, C terminal VAA049_2674 SM00387 Histidine kinase-like ATPases VAA049_2674 SM00388 His Kinase A (phosphoacceptor) domain VAA049_268 SM00965 Secretin and TonB N terminus short domain VAA049_2685 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_2685 SM00267 diguanylate cyclase VAA049_2690 SM00344 helix_turn_helix ASNC type VAA049_2696 SM00493 VAA049_2696 VAA049_2698 SM00382 ATPases associated with a variety of cellular activities VAA049_2702 SM00448 cheY-homologous receiver domain VAA049_2711 SM00226 Low molecular weight phosphatase family VAA049_2721 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_2722 SM00267 diguanylate cyclase VAA049_2726 SM00852 Probable molybdopterin binding domain VAA049_2727 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_2730 SM00382 ATPases associated with a variety of cellular activities VAA049_2730 SM00448 cheY-homologous receiver domain VAA049_2731 SM00487 DEAD-like helicases superfamily VAA049_2731 SM00490 helicase superfamily c-terminal domain VAA049_2737 SM00900 VAA049_2737 VAA049_2739 SM00478 endonuclease III VAA049_2739 SM00525 VAA049_2739 VAA049_2743 SM00479 VAA049_2743 VAA049_2758 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VAA049_2762 SM00387 Histidine kinase-like ATPases VAA049_2763 SM00862 Transcriptional regulatory protein, C terminal VAA049_2770 SM00244 prohibitin homologues VAA049_2772 SM00422 helix_turn_helix, mercury resistance VAA049_2775 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VAA049_2775 SM00292 breast cancer carboxy-terminal domain VAA049_2775 SM00532 Ligase N family VAA049_2776 SM00771 ZipA, C-terminal domain (FtsZ-binding) VAA049_278 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_2783 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_2786 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_2786 SM01091 Transporter associated domain VAA049_2797 SM00936 Penicillin-binding protein 5, C-terminal domain VAA049_2801 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_2824 SM00984 UDP binding domain VAA049_2826 SM00226 Low molecular weight phosphatase family VAA049_283 SM01150 VAA049_283 VAA049_2833 SM00642 Alpha-amylase domain VAA049_2835 SM00354 helix_turn _helix lactose operon repressor VAA049_2837 SM00382 ATPases associated with a variety of cellular activities VAA049_2837 SM00930 VAA049_2837 VAA049_284 SM00100 Cyclic nucleotide-monophosphate binding domain VAA049_284 SM00419 helix_turn_helix, cAMP Regulatory protein VAA049_2843 SM00028 Tetratricopeptide repeats VAA049_2844 SM00267 diguanylate cyclase VAA049_2846 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VAA049_2846 SM00475 5'-3' exonuclease VAA049_2849 SM00981 VAA049_2849 VAA049_2854 SM00861 Transketolase, pyrimidine binding domain VAA049_2870 SM01211 VAA049_2870 VAA049_2871 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_2880 SM00271 DnaJ molecular chaperone homology domain VAA049_2889 SM00487 DEAD-like helicases superfamily VAA049_289 SM00382 ATPases associated with a variety of cellular activities VAA049_2903 SM00764 Citrate lyase ligase C-terminal domain VAA049_2908 SM00091 PAS domain VAA049_2908 SM00387 Histidine kinase-like ATPases VAA049_2909 SM00448 cheY-homologous receiver domain VAA049_2915 SM00849 Metallo-beta-lactamase superfamily VAA049_2918 SM00382 ATPases associated with a variety of cellular activities VAA049_2928 SM00495 Chitin-binding domain type 3 VAA049_2930 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_2930 SM01240 VAA049_2930 VAA049_2934 SM00382 ATPases associated with a variety of cellular activities VAA049_2935 SM00564 beta-propeller repeat VAA049_2939 SM00530 Helix-turn-helix XRE-family like proteins VAA049_2941 SM00562 VAA049_2941 VAA049_2946 SM00271 DnaJ molecular chaperone homology domain VAA049_295 SM00788 Adenylosuccinate synthetase VAA049_2955 SM01323 VAA049_2955 VAA049_2958 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_296 SM00671 Sel1-like repeats. VAA049_2966 SM00382 ATPases associated with a variety of cellular activities VAA049_2972 SM00091 PAS domain VAA049_2972 SM00387 Histidine kinase-like ATPases VAA049_2972 SM00388 His Kinase A (phosphoacceptor) domain VAA049_2973 SM00448 cheY-homologous receiver domain VAA049_2973 SM00862 Transcriptional regulatory protein, C terminal VAA049_298 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_298 SM00357 Cold shock protein domain VAA049_298 SM00955 VAA049_298 VAA049_2984 SM00382 ATPases associated with a variety of cellular activities VAA049_2984 SM01086 C-terminal, D2-small domain, of ClpB protein VAA049_2986 SM00363 S4 RNA-binding domain VAA049_2989 SM00830 Chorismate mutase type II VAA049_299 SM00967 RNA 2'-O ribose methyltransferase substrate binding VAA049_2991 SM00052 Putative diguanylate phosphodiesterase VAA049_2991 SM00267 diguanylate cyclase VAA049_2995 SM00382 ATPases associated with a variety of cellular activities VAA049_2997 SM00830 Chorismate mutase type II VAA049_300 SM01403 VAA049_300 VAA049_3000 SM00448 cheY-homologous receiver domain VAA049_3000 SM00850 LytTr DNA-binding domain VAA049_3011 SM00904 Riboflavin kinase VAA049_3014 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VAA049_3020 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VAA049_3022 SM00927 DNA mismatch repair enzyme MutH VAA049_3025 SM00382 ATPases associated with a variety of cellular activities VAA049_3027 SM00937 VAA049_3027 VAA049_3030 SM00487 DEAD-like helicases superfamily VAA049_3030 SM00490 helicase superfamily c-terminal domain VAA049_3033 SM00052 Putative diguanylate phosphodiesterase VAA049_3033 SM00267 diguanylate cyclase VAA049_3037 SM00052 Putative diguanylate phosphodiesterase VAA049_3037 SM00091 PAS domain VAA049_3037 SM00267 diguanylate cyclase VAA049_304 SM01382 VAA049_304 VAA049_304 SM01383 VAA049_304 VAA049_3041 SM00347 helix_turn_helix multiple antibiotic resistance protein VAA049_3043 SM00028 Tetratricopeptide repeats VAA049_3044 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_3044 SM00322 K homology RNA-binding domain VAA049_3045 SM01387 VAA049_3045 VAA049_3049 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_3049 SM00322 K homology RNA-binding domain VAA049_3057 SM00382 ATPases associated with a variety of cellular activities VAA049_3059 SM01103 VAA049_3059 VAA049_3063 SM00363 S4 RNA-binding domain VAA049_307 SM00322 K homology RNA-binding domain VAA049_3072 SM00091 PAS domain VAA049_3072 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_3072 SM00387 Histidine kinase-like ATPases VAA049_3072 SM00388 His Kinase A (phosphoacceptor) domain VAA049_3072 SM00448 cheY-homologous receiver domain VAA049_3076 SM00382 ATPases associated with a variety of cellular activities VAA049_3077 SM00382 ATPases associated with a variety of cellular activities VAA049_3081 SM01068 Putative carbohydrate binding domain VAA049_3083 SM00382 ATPases associated with a variety of cellular activities VAA049_3087 SM00938 Nitrogen regulatory protein P-II VAA049_3093 SM00487 DEAD-like helicases superfamily VAA049_3093 SM00490 helicase superfamily c-terminal domain VAA049_3093 SM00847 Helicase associated domain (HA2) Add an annotation VAA049_3103 SM00382 ATPases associated with a variety of cellular activities VAA049_3105 SM00947 Carbonic anhydrase VAA049_311 SM01374 VAA049_311 VAA049_3112 SM00749 bacterial OsmY and nodulation domain VAA049_312 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VAA049_3122 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VAA049_3123 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VAA049_3128 SM00382 ATPases associated with a variety of cellular activities VAA049_3128 SM00962 SRP54-type protein, GTPase domain VAA049_3128 SM00963 SRP54-type protein, helical bundle domain VAA049_3131 SM01091 Transporter associated domain VAA049_3136 SM00829 Enoylreductase VAA049_3150 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VAA049_3152 SM00382 ATPases associated with a variety of cellular activities VAA049_3154 SM00382 ATPases associated with a variety of cellular activities VAA049_3159 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VAA049_3159 SM00534 ATPase domain of DNA mismatch repair MUTS family VAA049_3161 SM00257 Lysin motif VAA049_3170 SM00905 Dihydroneopterin aldolase VAA049_3171 SM01207 VAA049_3171 VAA049_3176 SM00400 zinc finger VAA049_3176 SM00493 VAA049_3176 VAA049_3176 SM00766 DNA primase DnaG DnaB-binding VAA049_3179 SM00563 Phosphate acyltransferases VAA049_3182 SM00420 helix_turn_helix, Deoxyribose operon repressor VAA049_3182 SM01134 VAA049_3182 VAA049_3191 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA049_3194 SM00861 Transketolase, pyrimidine binding domain VAA049_3196 SM00731 SprT homologues. VAA049_3201 SM00732 Likely ribonuclease with RNase H fold. VAA049_3202 SM00363 S4 RNA-binding domain VAA049_3203 SM00421 helix_turn_helix, Lux Regulon VAA049_3205 SM00382 ATPases associated with a variety of cellular activities VAA049_3209 SM01152 VAA049_3209 VAA049_3212 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_3215 SM00478 endonuclease III VAA049_3215 SM00525 VAA049_3215 VAA049_3222 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_3222 SM01049 VAA049_3222 VAA049_3228 SM00271 DnaJ molecular chaperone homology domain VAA049_3232 SM00650 Ribosomal RNA adenine dimethylases VAA049_325 SM00363 S4 RNA-binding domain VAA049_325 SM01390 VAA049_325 VAA049_3256 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_326 SM00662 RNA polymerases D VAA049_3272 SM00028 Tetratricopeptide repeats VAA049_3274 SM00965 Secretin and TonB N terminus short domain VAA049_3278 SM00052 Putative diguanylate phosphodiesterase VAA049_3278 SM00267 diguanylate cyclase VAA049_3280 SM00421 helix_turn_helix, Lux Regulon VAA049_3286 SM01018 B12 binding domain VAA049_3313 SM01005 Alanine racemase, C-terminal domain VAA049_3314 SM00382 ATPases associated with a variety of cellular activities VAA049_3323 SM00838 Elongation factor G C-terminus VAA049_3323 SM00889 Elongation factor G, domain IV VAA049_333 SM00487 DEAD-like helicases superfamily VAA049_333 SM00490 helicase superfamily c-terminal domain VAA049_3331 SM00320 WD40 repeats VAA049_3334 SM00244 prohibitin homologues VAA049_3335 SM00244 prohibitin homologues VAA049_3339 SM00853 MutL C terminal dimerisation domain VAA049_3339 SM01340 VAA049_3339 VAA049_3340 SM00257 Lysin motif VAA049_3340 SM00646 VAA049_3340 VAA049_3352 SM00479 VAA049_3352 VAA049_3364 SM00663 RNA polymerase I subunit A N-terminus VAA049_3369 SM00649 Ribosomal protein L11/L12 VAA049_3370 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VAA049_3370 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VAA049_3381 SM00155 Phospholipase D. Active site motifs. VAA049_3392 SM00357 Cold shock protein domain VAA049_3392 SM00382 ATPases associated with a variety of cellular activities VAA049_3392 SM00959 Rho termination factor, N-terminal domain VAA049_3394 SM00487 DEAD-like helicases superfamily VAA049_3394 SM00490 helicase superfamily c-terminal domain VAA049_3396 SM00387 Histidine kinase-like ATPases VAA049_3396 SM00388 His Kinase A (phosphoacceptor) domain VAA049_3396 SM00448 cheY-homologous receiver domain VAA049_3398 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_3399 SM00479 VAA049_3399 VAA049_3403 SM00878 Biotin carboxylase C-terminal domain VAA049_3408 SM00354 helix_turn _helix lactose operon repressor VAA049_3415 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_3415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_3415 SM01049 VAA049_3415 VAA049_3418 SM00862 Transcriptional regulatory protein, C terminal VAA049_3419 SM00422 helix_turn_helix, mercury resistance VAA049_3420 SM00798 AICARFT/IMPCHase bienzyme VAA049_3420 SM00851 MGS-like domain VAA049_3421 SM01209 VAA049_3421 VAA049_3421 SM01210 VAA049_3421 VAA049_3423 SM00411 bacterial (prokaryotic) histone like domain VAA049_3429 SM00986 Uracil DNA glycosylase superfamily VAA049_3429 SM00987 UreE urease accessory protein, C-terminal domain VAA049_343 SM00382 ATPases associated with a variety of cellular activities VAA049_3433 SM00849 Metallo-beta-lactamase superfamily VAA049_3433 SM01027 Beta-Casp domain VAA049_3458 SM00382 ATPases associated with a variety of cellular activities VAA049_3480 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VAA049_3480 SM01232 VAA049_3480 VAA049_3485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_3485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_3485 SM01049 VAA049_3485 VAA049_3499 SM00382 ATPases associated with a variety of cellular activities VAA049_35 SM00257 Lysin motif VAA049_3501 SM00382 ATPases associated with a variety of cellular activities VAA049_3504 SM00341 Helicase and RNase D C-terminal VAA049_3504 SM00487 DEAD-like helicases superfamily VAA049_3504 SM00490 helicase superfamily c-terminal domain VAA049_3504 SM00956 VAA049_3504 VAA049_3507 SM00342 helix_turn_helix, arabinose operon control protein VAA049_3517 SM00382 ATPases associated with a variety of cellular activities VAA049_3553 SM00382 ATPases associated with a variety of cellular activities VAA049_3561 SM00470 ParB-like nuclease domain VAA049_3564 SM01228 VAA049_3564 VAA049_3569 SM00382 ATPases associated with a variety of cellular activities VAA049_357 SM00382 ATPases associated with a variety of cellular activities VAA049_3571 SM00062 Bacterial periplasmic substrate-binding proteins VAA049_360 SM00924 MgtE intracellular N domain VAA049_366 SM00382 ATPases associated with a variety of cellular activities VAA049_370 SM00116 Domain in cystathionine beta-synthase and other proteins. VAA049_372 SM00382 ATPases associated with a variety of cellular activities VAA049_379 SM00563 Phosphate acyltransferases VAA049_384 SM00670 Large family of predicted nucleotide-binding domains VAA049_385 SM00487 DEAD-like helicases superfamily VAA049_385 SM00490 helicase superfamily c-terminal domain VAA049_395 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_4 SM00387 Histidine kinase-like ATPases VAA049_4 SM00433 TopoisomeraseII VAA049_40 SM01001 AIR carboxylase VAA049_407 SM01329 VAA049_407 VAA049_408 SM00917 LeuA allosteric (dimerisation) domain VAA049_410 SM00014 Acid phosphatase homologues VAA049_434 SM00358 Double-stranded RNA binding motif VAA049_434 SM00535 Ribonuclease III family VAA049_441 SM00073 Histidine Phosphotransfer domain VAA049_441 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_441 SM00387 Histidine kinase-like ATPases VAA049_441 SM00388 His Kinase A (phosphoacceptor) domain VAA049_441 SM00448 cheY-homologous receiver domain VAA049_442 SM00267 diguanylate cyclase VAA049_444 SM00954 Region found in RelA / SpoT proteins VAA049_447 SM01192 VAA049_447 VAA049_447 SM01193 VAA049_447 VAA049_449 SM00382 ATPases associated with a variety of cellular activities VAA049_451 SM00287 Bacterial SH3 domain homologues VAA049_454 SM00880 VAA049_454 VAA049_454 SM01118 VAA049_454 VAA049_456 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_456 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_464 SM00387 Histidine kinase-like ATPases VAA049_464 SM00433 TopoisomeraseII VAA049_465 SM00434 DNA Topoisomerase IV VAA049_474 SM00644 VAA049_474 VAA049_480 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA049_480 SM00895 VAA049_480 VAA049_495 SM00842 Cell division protein FtsA VAA049_496 SM00864 Tubulin/FtsZ family, GTPase domain VAA049_496 SM00865 Tubulin/FtsZ family, C-terminal domain VAA049_499 SM00957 SecA DEAD-like domain VAA049_499 SM00958 SecA preprotein cross-linking domain VAA049_502 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VAA049_503 SM00851 MGS-like domain VAA049_503 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VAA049_518 SM00729 Elongator protein 3, MiaB family, Radical SAM VAA049_519 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VAA049_519 SM00091 PAS domain VAA049_519 SM00267 diguanylate cyclase VAA049_520 SM00073 Histidine Phosphotransfer domain VAA049_520 SM00091 PAS domain VAA049_520 SM00387 Histidine kinase-like ATPases VAA049_520 SM00388 His Kinase A (phosphoacceptor) domain VAA049_520 SM00448 cheY-homologous receiver domain VAA049_521 SM00448 cheY-homologous receiver domain VAA049_521 SM00862 Transcriptional regulatory protein, C terminal VAA049_529 SM00518 AP endonuclease family 2 VAA049_530 SM00986 Uracil DNA glycosylase superfamily VAA049_530 SM00987 UreE urease accessory protein, C-terminal domain VAA049_538 SM01133 VAA049_538 VAA049_539 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VAA049_545 SM00382 ATPases associated with a variety of cellular activities VAA049_546 SM00838 Elongation factor G C-terminus VAA049_546 SM00889 Elongation factor G, domain IV VAA049_550 SM01038 Beta galactosidase small chain VAA049_551 SM00354 helix_turn _helix lactose operon repressor VAA049_570 SM00925 MltA specific insert domain VAA049_577 SM00464 Found in ATP-dependent protease La (LON) VAA049_58 SM00876 Biotin and Thiamin Synthesis associated domain VAA049_587 SM00900 VAA049_587 VAA049_595 SM00267 diguanylate cyclase VAA049_605 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VAA049_616 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_625 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VAA049_627 SM00935 Outer membrane protein (OmpH-like) VAA049_63 SM00344 helix_turn_helix ASNC type VAA049_633 SM00481 DNA polymerase alpha chain like domain VAA049_635 SM00977 TilS substrate C-terminal domain VAA049_638 SM00938 Nitrogen regulatory protein P-II VAA049_64 SM00052 Putative diguanylate phosphodiesterase VAA049_64 SM00091 PAS domain VAA049_64 SM00267 diguanylate cyclase VAA049_640 SM00257 Lysin motif VAA049_641 SM00849 Metallo-beta-lactamase superfamily VAA049_644 SM00479 VAA049_644 VAA049_652 SM00267 diguanylate cyclase VAA049_653 SM00363 S4 RNA-binding domain VAA049_654 SM00463 Small MutS-related domain VAA049_659 SM01081 Putative carbohydrate binding domain VAA049_667 SM00823 Phosphopantetheine attachment site VAA049_673 SM00858 VAA049_673 VAA049_674 SM00260 Two component signalling adaptor domain VAA049_674 SM00448 cheY-homologous receiver domain VAA049_675 SM00138 Methyltransferase, chemotaxis proteins VAA049_684 SM00047 Lysozyme subfamily 2 VAA049_709 SM01400 VAA049_709 VAA049_713 SM00937 VAA049_713 VAA049_725 SM00028 Tetratricopeptide repeats VAA049_728 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_728 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_731 SM01130 VAA049_731 VAA049_748 SM00382 ATPases associated with a variety of cellular activities VAA049_749 SM00091 PAS domain VAA049_749 SM00387 Histidine kinase-like ATPases VAA049_749 SM00388 His Kinase A (phosphoacceptor) domain VAA049_750 SM00382 ATPases associated with a variety of cellular activities VAA049_750 SM00448 cheY-homologous receiver domain VAA049_755 SM00382 ATPases associated with a variety of cellular activities VAA049_766 SM00463 Small MutS-related domain VAA049_774 SM00825 Beta-ketoacyl synthase VAA049_776 SM00859 Semialdehyde dehydrogenase, NAD binding domain VAA049_794 SM00861 Transketolase, pyrimidine binding domain VAA049_797 SM00881 CoA binding domain VAA049_799 SM00382 ATPases associated with a variety of cellular activities VAA049_801 SM00342 helix_turn_helix, arabinose operon control protein VAA049_802 SM00899 VAA049_802 VAA049_806 SM00836 DALR anticodon binding domain VAA049_806 SM01016 Arginyl tRNA synthetase N terminal dom VAA049_809 SM00855 Phosphoglycerate mutase family VAA049_811 SM00382 ATPases associated with a variety of cellular activities VAA049_811 SM00962 SRP54-type protein, GTPase domain VAA049_814 SM00448 cheY-homologous receiver domain VAA049_816 SM00073 Histidine Phosphotransfer domain VAA049_816 SM00260 Two component signalling adaptor domain VAA049_816 SM00387 Histidine kinase-like ATPases VAA049_816 SM01231 VAA049_816 VAA049_817 SM00448 cheY-homologous receiver domain VAA049_819 SM00260 Two component signalling adaptor domain VAA049_820 SM00260 Two component signalling adaptor domain VAA049_822 SM00382 ATPases associated with a variety of cellular activities VAA049_836 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VAA049_836 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VAA049_836 SM00493 VAA049_836 VAA049_84 SM00563 Phosphate acyltransferases VAA049_843 SM00073 Histidine Phosphotransfer domain VAA049_845 SM00859 Semialdehyde dehydrogenase, NAD binding domain VAA049_850 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_851 SM00363 S4 RNA-binding domain VAA049_857 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VAA049_858 SM00822 VAA049_858 VAA049_860 SM00825 Beta-ketoacyl synthase VAA049_874 SM00260 Two component signalling adaptor domain VAA049_874 SM00448 cheY-homologous receiver domain VAA049_88 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VAA049_88 SM00091 PAS domain VAA049_88 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_880 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VAA049_884 SM00870 VAA049_884 VAA049_889 SM00487 DEAD-like helicases superfamily VAA049_889 SM00491 VAA049_889 VAA049_896 SM00474 3'-5' exonuclease VAA049_899 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_90 SM00450 Rhodanese Homology Domain VAA049_900 SM01144 VAA049_900 VAA049_901 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VAA049_907 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VAA049_910 SM00530 Helix-turn-helix XRE-family like proteins VAA049_911 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_911 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_912 SM00563 Phosphate acyltransferases VAA049_915 SM00978 VAA049_915 VAA049_92 SM01004 Delta-aminolevulinic acid dehydratase VAA049_925 SM00495 Chitin-binding domain type 3 VAA049_925 SM00636 VAA049_925 VAA049_94 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VAA049_94 SM00474 3'-5' exonuclease VAA049_94 SM00475 5'-3' exonuclease VAA049_94 SM00482 DNA polymerase A domain VAA049_940 SM00563 Phosphate acyltransferases VAA049_943 SM00052 Putative diguanylate phosphodiesterase VAA049_943 SM00267 diguanylate cyclase VAA049_950 SM00382 ATPases associated with a variety of cellular activities VAA049_950 SM00448 cheY-homologous receiver domain VAA049_951 SM00387 Histidine kinase-like ATPases VAA049_951 SM00388 His Kinase A (phosphoacceptor) domain VAA049_954 SM00382 ATPases associated with a variety of cellular activities VAA049_954 SM00994 ClpX C4-type zinc finger VAA049_954 SM01086 C-terminal, D2-small domain, of ClpB protein VAA049_955 SM00382 ATPases associated with a variety of cellular activities VAA049_955 SM00464 Found in ATP-dependent protease La (LON) VAA049_956 SM00411 bacterial (prokaryotic) histone like domain VAA049_958 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VAA049_960 SM00316 Ribosomal protein S1-like RNA-binding domain VAA049_961 SM00411 bacterial (prokaryotic) histone like domain VAA049_963 SM00028 Tetratricopeptide repeats VAA049_964 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VAA049_969 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VAA049_969 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VAA049_970 SM00344 helix_turn_helix ASNC type VAA049_971 SM00843 VAA049_971 VAA049_974 SM00345 helix_turn_helix gluconate operon transcriptional repressor VAA049_976 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VAA049_976 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VAA049_987 SM00487 DEAD-like helicases superfamily VAA049_987 SM00490 helicase superfamily c-terminal domain VAA049_987 SM00982 VAA049_987 VAA049_987 SM01058 CarD-like/TRCF domain VAA049_990 SM00382 ATPases associated with a variety of cellular activities VAA049_993 SM00849 Metallo-beta-lactamase superfamily VAA049_994 SM00382 ATPases associated with a variety of cellular activities