NH62_10003 SM00100 Cyclic nucleotide-monophosphate binding domain NH62_10006 SM00354 helix_turn _helix lactose operon repressor NH62_10010 SM00382 ATPases associated with a variety of cellular activities NH62_10019 SM00382 ATPases associated with a variety of cellular activities NH62_10020 SM00382 ATPases associated with a variety of cellular activities NH62_10020 SM01086 C-terminal, D2-small domain, of ClpB protein NH62_10035 SM00052 Putative diguanylate phosphodiesterase NH62_10036 SM00450 Rhodanese Homology Domain NH62_10051 SM00422 helix_turn_helix, mercury resistance NH62_10054 SM00052 Putative diguanylate phosphodiesterase NH62_10054 SM00267 diguanylate cyclase NH62_10060 SM00267 diguanylate cyclase NH62_10061 SM00382 ATPases associated with a variety of cellular activities NH62_10065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10071 SM00487 DEAD-like helicases superfamily NH62_10071 SM00490 helicase superfamily c-terminal domain NH62_10073 SM00257 Lysin motif NH62_10075 SM00422 helix_turn_helix, mercury resistance NH62_10079 SM00028 Tetratricopeptide repeats NH62_10080 SM00267 diguanylate cyclase NH62_10083 SM00245 tail specific protease NH62_10092 SM00014 Acid phosphatase homologues NH62_10096 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10096 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10099 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins NH62_10099 SM00495 Chitin-binding domain type 3 NH62_10099 SM00636 NH62_10099 NH62_10110 SM00642 Alpha-amylase domain NH62_10113 SM00421 helix_turn_helix, Lux Regulon NH62_10115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10115 SM01049 NH62_10115 NH62_10123 SM00470 ParB-like nuclease domain NH62_10128 SM01236 NH62_10128 NH62_10129 SM00822 NH62_10129 NH62_10131 SM00448 cheY-homologous receiver domain NH62_10131 SM00862 Transcriptional regulatory protein, C terminal NH62_10132 SM00387 Histidine kinase-like ATPases NH62_10132 SM00388 His Kinase A (phosphoacceptor) domain NH62_10134 SM00382 ATPases associated with a variety of cellular activities NH62_10139 SM00448 cheY-homologous receiver domain NH62_10140 SM00073 Histidine Phosphotransfer domain NH62_10140 SM00260 Two component signalling adaptor domain NH62_10140 SM00387 Histidine kinase-like ATPases NH62_10140 SM01231 NH62_10140 NH62_10141 SM00260 Two component signalling adaptor domain NH62_10142 SM00260 Two component signalling adaptor domain NH62_10143 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10143 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10144 SM00138 Methyltransferase, chemotaxis proteins NH62_10146 SM00448 cheY-homologous receiver domain NH62_10147 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10149 SM00331 Sigma factor PP2C-like phosphatases NH62_10149 SM00448 cheY-homologous receiver domain NH62_10151 SM00382 ATPases associated with a variety of cellular activities NH62_10152 SM00052 Putative diguanylate phosphodiesterase NH62_10152 SM00267 diguanylate cyclase NH62_10156 SM00421 helix_turn_helix, Lux Regulon NH62_10160 SM00342 helix_turn_helix, arabinose operon control protein NH62_10165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10166 SM00344 helix_turn_helix ASNC type NH62_10174 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10174 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10177 SM00342 helix_turn_helix, arabinose operon control protein NH62_10179 SM00450 Rhodanese Homology Domain NH62_10180 SM00347 helix_turn_helix multiple antibiotic resistance protein NH62_10185 SM00849 Metallo-beta-lactamase superfamily NH62_10194 SM00062 Bacterial periplasmic substrate-binding proteins NH62_10196 SM00382 ATPases associated with a variety of cellular activities NH62_10199 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10199 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10202 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10202 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10204 SM00642 Alpha-amylase domain NH62_10207 SM00671 Sel1-like repeats. NH62_10210 SM01154 NH62_10210 NH62_10214 SM00342 helix_turn_helix, arabinose operon control protein NH62_10214 SM01009 AlkA N-terminal domain NH62_10224 SM00347 helix_turn_helix multiple antibiotic resistance protein NH62_10228 SM00342 helix_turn_helix, arabinose operon control protein NH62_10233 SM00382 ATPases associated with a variety of cellular activities NH62_10238 SM00487 DEAD-like helicases superfamily NH62_10238 SM00490 helicase superfamily c-terminal domain NH62_10240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10249 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10250 SM00062 Bacterial periplasmic substrate-binding proteins NH62_10251 SM00382 ATPases associated with a variety of cellular activities NH62_10254 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10254 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10261 SM00267 diguanylate cyclase NH62_10266 SM00267 diguanylate cyclase NH62_10266 SM01079 NH62_10266 NH62_10269 SM00267 diguanylate cyclase NH62_10270 SM00347 helix_turn_helix multiple antibiotic resistance protein NH62_10271 SM00260 Two component signalling adaptor domain NH62_10271 SM00448 cheY-homologous receiver domain NH62_10273 SM00421 helix_turn_helix, Lux Regulon NH62_10275 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. NH62_10278 SM00382 ATPases associated with a variety of cellular activities NH62_10284 SM00420 helix_turn_helix, Deoxyribose operon repressor NH62_10284 SM01134 NH62_10284 NH62_10285 SM00091 PAS domain NH62_10285 SM00267 diguanylate cyclase NH62_10287 SM00342 helix_turn_helix, arabinose operon control protein NH62_10290 SM00357 Cold shock protein domain NH62_10291 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_10296 SM00342 helix_turn_helix, arabinose operon control protein NH62_10299 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10299 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10305 SM00382 ATPases associated with a variety of cellular activities NH62_10311 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_10314 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10314 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10320 SM00849 Metallo-beta-lactamase superfamily NH62_10322 SM01350 NH62_10322 NH62_10325 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_10326 SM00481 DNA polymerase alpha chain like domain NH62_10334 SM00829 Enoylreductase NH62_10342 SM00530 Helix-turn-helix XRE-family like proteins NH62_10343 SM00530 Helix-turn-helix XRE-family like proteins NH62_10352 SM00357 Cold shock protein domain NH62_10357 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NH62_10359 SM00226 Low molecular weight phosphatase family NH62_10384 SM01007 Class II Aldolase and Adducin N-terminal domain NH62_10387 SM00420 helix_turn_helix, Deoxyribose operon repressor NH62_10387 SM01134 NH62_10387 NH62_10395 SM00345 helix_turn_helix gluconate operon transcriptional repressor NH62_10401 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NH62_10401 SM00091 PAS domain NH62_10401 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10404 SM00642 Alpha-amylase domain NH62_10407 SM00382 ATPases associated with a variety of cellular activities NH62_10411 SM00387 Histidine kinase-like ATPases NH62_10412 SM00448 cheY-homologous receiver domain NH62_10412 SM00850 LytTr DNA-binding domain NH62_10414 SM00267 diguanylate cyclase NH62_10418 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NH62_10421 SM01091 Transporter associated domain NH62_10422 SM01266 NH62_10422 NH62_10438 SM00883 Chaperonin 10 Kd subunit NH62_10439 SM00924 MgtE intracellular N domain NH62_10450 SM00357 Cold shock protein domain NH62_10450 SM00955 NH62_10450 NH62_10451 SM00487 DEAD-like helicases superfamily NH62_10451 SM00490 helicase superfamily c-terminal domain NH62_10452 SM00020 Trypsin-like serine protease NH62_10459 SM00857 Resolvase, N terminal domain NH62_10474 SM00354 helix_turn _helix lactose operon repressor NH62_10477 SM00387 Histidine kinase-like ATPases NH62_10477 SM00448 cheY-homologous receiver domain NH62_10485 SM00890 Domain of unknown function NH62_10486 SM00387 Histidine kinase-like ATPases NH62_10486 SM00388 His Kinase A (phosphoacceptor) domain NH62_10487 SM00448 cheY-homologous receiver domain NH62_10487 SM00862 Transcriptional regulatory protein, C terminal NH62_10491 SM00052 Putative diguanylate phosphodiesterase NH62_10494 SM00867 YceI-like domain NH62_10495 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_10503 SM00782 PhnA Zinc-Ribbon NH62_10509 SM00062 Bacterial periplasmic substrate-binding proteins NH62_10509 SM00267 diguanylate cyclase NH62_10513 SM00267 diguanylate cyclase NH62_10516 SM01002 Alanine dehydrogenase/PNT, C-terminal domain NH62_10516 SM01003 Alanine dehydrogenase/PNT, N-terminal domain NH62_10518 SM00387 Histidine kinase-like ATPases NH62_10518 SM00388 His Kinase A (phosphoacceptor) domain NH62_10519 SM00448 cheY-homologous receiver domain NH62_10519 SM00862 Transcriptional regulatory protein, C terminal NH62_10528 SM00881 CoA binding domain NH62_10543 SM00382 ATPases associated with a variety of cellular activities NH62_10553 SM00345 helix_turn_helix gluconate operon transcriptional repressor NH62_10553 SM00866 NH62_10553 NH62_10556 SM00382 ATPases associated with a variety of cellular activities NH62_10569 SM00852 Probable molybdopterin binding domain NH62_10572 SM00450 Rhodanese Homology Domain NH62_10573 SM00636 NH62_10573 NH62_10576 SM00861 Transketolase, pyrimidine binding domain NH62_10594 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NH62_10596 SM00450 Rhodanese Homology Domain NH62_10598 SM00563 Phosphate acyltransferases NH62_10606 SM00354 helix_turn _helix lactose operon repressor NH62_10607 SM00640 Glycosyl hydrolases family 32 NH62_10610 SM00091 PAS domain NH62_10610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10614 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10614 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10620 SM00354 helix_turn _helix lactose operon repressor NH62_10621 SM00421 helix_turn_helix, Lux Regulon NH62_10621 SM00448 cheY-homologous receiver domain NH62_10622 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10622 SM00387 Histidine kinase-like ATPases NH62_10625 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NH62_10629 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_10630 SM00421 helix_turn_helix, Lux Regulon NH62_10630 SM00448 cheY-homologous receiver domain NH62_10631 SM00387 Histidine kinase-like ATPases NH62_10635 SM00382 ATPases associated with a variety of cellular activities NH62_10639 SM00822 NH62_10639 NH62_10644 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NH62_10644 SM00267 diguanylate cyclase NH62_10646 SM00495 Chitin-binding domain type 3 NH62_10646 SM00636 NH62_10646 NH62_10649 SM00448 cheY-homologous receiver domain NH62_10650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10650 SM00387 Histidine kinase-like ATPases NH62_10650 SM00388 His Kinase A (phosphoacceptor) domain NH62_10655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10655 SM00387 Histidine kinase-like ATPases NH62_10655 SM00388 His Kinase A (phosphoacceptor) domain NH62_10655 SM00448 cheY-homologous receiver domain NH62_10657 SM00851 MGS-like domain NH62_10664 SM00387 Histidine kinase-like ATPases NH62_10665 SM00989 NH62_10665 NH62_10669 SM00382 ATPases associated with a variety of cellular activities NH62_10679 SM00387 Histidine kinase-like ATPases NH62_10679 SM00388 His Kinase A (phosphoacceptor) domain NH62_10679 SM00448 cheY-homologous receiver domain NH62_10701 SM00062 Bacterial periplasmic substrate-binding proteins NH62_10701 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NH62_10702 SM00382 ATPases associated with a variety of cellular activities NH62_10704 SM00327 von Willebrand factor (vWF) type A domain NH62_10705 SM00382 ATPases associated with a variety of cellular activities NH62_10710 SM00487 DEAD-like helicases superfamily NH62_10710 SM00490 helicase superfamily c-terminal domain NH62_10714 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10714 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10717 SM00796 Allophanate hydrolase subunit 1 NH62_10718 SM00797 Allophanate hydrolase subunit 2 NH62_10720 SM00984 UDP binding domain NH62_10722 SM00382 ATPases associated with a variety of cellular activities NH62_10725 SM00052 Putative diguanylate phosphodiesterase NH62_10725 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NH62_10725 SM00267 diguanylate cyclase NH62_10727 SM00271 DnaJ molecular chaperone homology domain NH62_10743 SM01321 NH62_10743 NH62_10794 SM00990 NH62_10794 NH62_10811 SM00530 Helix-turn-helix XRE-family like proteins NH62_10820 SM00871 Bacterial transcription activator, effector binding domain NH62_10825 SM01034 Sensors of blue-light using FAD NH62_10847 SM00360 RNA recognition motif NH62_10848 SM00360 RNA recognition motif NH62_10855 SM00360 RNA recognition motif NH62_10864 SM01034 Sensors of blue-light using FAD NH62_10868 SM00953 NH62_10868 NH62_10889 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NH62_10928 SM00530 Helix-turn-helix XRE-family like proteins NH62_10938 SM00530 Helix-turn-helix XRE-family like proteins NH62_10942 SM01321 NH62_10942 NH62_10944 SM01057 Eukaryotic-type carbonic anhydrase NH62_10947 SM00936 Penicillin-binding protein 5, C-terminal domain NH62_10949 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10949 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10951 SM00342 helix_turn_helix, arabinose operon control protein NH62_10953 SM00422 helix_turn_helix, mercury resistance NH62_10958 SM00387 Histidine kinase-like ATPases NH62_10958 SM00388 His Kinase A (phosphoacceptor) domain NH62_10959 SM00448 cheY-homologous receiver domain NH62_10959 SM00862 Transcriptional regulatory protein, C terminal NH62_10964 SM00642 Alpha-amylase domain NH62_10967 SM00420 helix_turn_helix, Deoxyribose operon repressor NH62_10967 SM01134 NH62_10967 NH62_10970 SM01007 Class II Aldolase and Adducin N-terminal domain NH62_10972 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family NH62_10975 SM00448 cheY-homologous receiver domain NH62_10975 SM00862 Transcriptional regulatory protein, C terminal NH62_10976 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10976 SM00387 Histidine kinase-like ATPases NH62_10976 SM00388 His Kinase A (phosphoacceptor) domain NH62_10982 SM00342 helix_turn_helix, arabinose operon control protein NH62_10983 SM00382 ATPases associated with a variety of cellular activities NH62_10989 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins NH62_10992 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_10992 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_10993 SM00458 Ricin-type beta-trefoil NH62_10995 SM00267 diguanylate cyclase NH62_10999 SM00387 Histidine kinase-like ATPases NH62_11000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_11004 SM00487 DEAD-like helicases superfamily NH62_11004 SM00490 helicase superfamily c-terminal domain NH62_11005 SM00974 NH62_11005 NH62_11006 SM01240 NH62_11006 NH62_11013 SM00448 cheY-homologous receiver domain NH62_11017 SM00357 Cold shock protein domain NH62_11019 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NH62_11019 SM00382 ATPases associated with a variety of cellular activities NH62_11025 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_11025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_11029 SM00327 von Willebrand factor (vWF) type A domain NH62_11030 SM00028 Tetratricopeptide repeats NH62_11033 SM00357 Cold shock protein domain NH62_11034 SM00267 diguanylate cyclase NH62_11053 SM00382 ATPases associated with a variety of cellular activities NH62_11053 SM00448 cheY-homologous receiver domain NH62_11054 SM00091 PAS domain NH62_11054 SM00387 Histidine kinase-like ATPases NH62_11054 SM00388 His Kinase A (phosphoacceptor) domain NH62_11055 SM00495 Chitin-binding domain type 3 NH62_20002 SM00478 endonuclease III NH62_20002 SM00525 NH62_20002 NH62_20005 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_20008 SM01152 NH62_20008 NH62_20012 SM00382 ATPases associated with a variety of cellular activities NH62_20014 SM00421 helix_turn_helix, Lux Regulon NH62_20015 SM00363 S4 RNA-binding domain NH62_20016 SM00732 Likely ribonuclease with RNase H fold. NH62_20021 SM00731 SprT homologues. NH62_20023 SM00861 Transketolase, pyrimidine binding domain NH62_20026 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NH62_20035 SM00420 helix_turn_helix, Deoxyribose operon repressor NH62_20035 SM01134 NH62_20035 NH62_20038 SM00563 Phosphate acyltransferases NH62_20041 SM00400 zinc finger NH62_20041 SM00493 NH62_20041 NH62_20041 SM00766 DNA primase DnaG DnaB-binding NH62_20046 SM01207 NH62_20046 NH62_20047 SM00905 Dihydroneopterin aldolase NH62_20056 SM00257 Lysin motif NH62_20058 SM00533 DNA-binding domain of DNA mismatch repair MUTS family NH62_20058 SM00534 ATPase domain of DNA mismatch repair MUTS family NH62_20063 SM00382 ATPases associated with a variety of cellular activities NH62_20065 SM00382 ATPases associated with a variety of cellular activities NH62_20067 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain NH62_20081 SM00829 Enoylreductase NH62_20086 SM01091 Transporter associated domain NH62_20089 SM00382 ATPases associated with a variety of cellular activities NH62_20089 SM00962 SRP54-type protein, GTPase domain NH62_20089 SM00963 SRP54-type protein, helical bundle domain NH62_20094 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NH62_20095 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NH62_20105 SM00749 bacterial OsmY and nodulation domain NH62_20112 SM00947 Carbonic anhydrase NH62_20114 SM00382 ATPases associated with a variety of cellular activities NH62_20124 SM00487 DEAD-like helicases superfamily NH62_20124 SM00490 helicase superfamily c-terminal domain NH62_20124 SM00847 Helicase associated domain (HA2) Add an annotation NH62_20129 SM00938 Nitrogen regulatory protein P-II NH62_20133 SM00382 ATPases associated with a variety of cellular activities NH62_20135 SM01068 Putative carbohydrate binding domain NH62_20139 SM00382 ATPases associated with a variety of cellular activities NH62_20140 SM00382 ATPases associated with a variety of cellular activities NH62_20144 SM00091 PAS domain NH62_20144 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20144 SM00387 Histidine kinase-like ATPases NH62_20144 SM00388 His Kinase A (phosphoacceptor) domain NH62_20144 SM00448 cheY-homologous receiver domain NH62_20153 SM00363 S4 RNA-binding domain NH62_20157 SM01103 NH62_20157 NH62_20159 SM00382 ATPases associated with a variety of cellular activities NH62_20167 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_20167 SM00322 K homology RNA-binding domain NH62_20171 SM01387 NH62_20171 NH62_20172 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_20172 SM00322 K homology RNA-binding domain NH62_20173 SM00028 Tetratricopeptide repeats NH62_20174 SM00347 helix_turn_helix multiple antibiotic resistance protein NH62_20178 SM00052 Putative diguanylate phosphodiesterase NH62_20178 SM00267 diguanylate cyclase NH62_20183 SM00052 Putative diguanylate phosphodiesterase NH62_20183 SM00267 diguanylate cyclase NH62_20185 SM00487 DEAD-like helicases superfamily NH62_20185 SM00490 helicase superfamily c-terminal domain NH62_20188 SM00937 NH62_20188 NH62_20190 SM00382 ATPases associated with a variety of cellular activities NH62_20193 SM00927 DNA mismatch repair enzyme MutH NH62_20195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. NH62_20201 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NH62_20204 SM00904 Riboflavin kinase NH62_20215 SM00448 cheY-homologous receiver domain NH62_20215 SM00850 LytTr DNA-binding domain NH62_20218 SM00830 Chorismate mutase type II NH62_20220 SM00382 ATPases associated with a variety of cellular activities NH62_20224 SM00052 Putative diguanylate phosphodiesterase NH62_20224 SM00267 diguanylate cyclase NH62_20226 SM00830 Chorismate mutase type II NH62_20229 SM00363 S4 RNA-binding domain NH62_20231 SM00382 ATPases associated with a variety of cellular activities NH62_20231 SM01086 C-terminal, D2-small domain, of ClpB protein NH62_20242 SM00448 cheY-homologous receiver domain NH62_20242 SM00862 Transcriptional regulatory protein, C terminal NH62_20243 SM00091 PAS domain NH62_20243 SM00387 Histidine kinase-like ATPases NH62_20243 SM00388 His Kinase A (phosphoacceptor) domain NH62_20249 SM00382 ATPases associated with a variety of cellular activities NH62_20257 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_20260 SM01323 NH62_20260 NH62_20269 SM00271 DnaJ molecular chaperone homology domain NH62_20274 SM00562 NH62_20274 NH62_20276 SM00530 Helix-turn-helix XRE-family like proteins NH62_20280 SM00564 beta-propeller repeat NH62_20281 SM00382 ATPases associated with a variety of cellular activities NH62_20285 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_20285 SM01240 NH62_20285 NH62_20287 SM00495 Chitin-binding domain type 3 NH62_20297 SM00382 ATPases associated with a variety of cellular activities NH62_20300 SM00849 Metallo-beta-lactamase superfamily NH62_20306 SM00448 cheY-homologous receiver domain NH62_20307 SM00091 PAS domain NH62_20307 SM00387 Histidine kinase-like ATPases NH62_20312 SM00764 Citrate lyase ligase C-terminal domain NH62_20339 SM00530 Helix-turn-helix XRE-family like proteins NH62_20344 SM00060 Fibronectin type 3 domain NH62_20345 SM00247 Beta/gamma crystallins NH62_20348 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20349 SM00862 Transcriptional regulatory protein, C terminal NH62_20361 SM00342 helix_turn_helix, arabinose operon control protein NH62_20363 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20363 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20369 SM01276 NH62_20369 NH62_20381 SM00271 DnaJ molecular chaperone homology domain NH62_20390 SM00062 Bacterial periplasmic substrate-binding proteins NH62_20391 SM01211 NH62_20391 NH62_20392 SM01321 NH62_20392 NH62_20408 SM00861 Transketolase, pyrimidine binding domain NH62_20413 SM00981 NH62_20413 NH62_20417 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs NH62_20417 SM00475 5'-3' exonuclease NH62_20419 SM00267 diguanylate cyclase NH62_20420 SM00028 Tetratricopeptide repeats NH62_20426 SM00382 ATPases associated with a variety of cellular activities NH62_20426 SM00930 NH62_20426 NH62_20428 SM00354 helix_turn _helix lactose operon repressor NH62_20430 SM00642 Alpha-amylase domain NH62_20436 SM00226 Low molecular weight phosphatase family NH62_20438 SM00984 UDP binding domain NH62_20449 SM00710 Parallel beta-helix repeats NH62_20462 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_20465 SM00936 Penicillin-binding protein 5, C-terminal domain NH62_20476 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_20476 SM01091 Transporter associated domain NH62_20479 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_20486 SM00771 ZipA, C-terminal domain (FtsZ-binding) NH62_20487 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NH62_20487 SM00292 breast cancer carboxy-terminal domain NH62_20487 SM00532 Ligase N family NH62_20490 SM00422 helix_turn_helix, mercury resistance NH62_20492 SM00244 prohibitin homologues NH62_20500 SM00862 Transcriptional regulatory protein, C terminal NH62_20501 SM00387 Histidine kinase-like ATPases NH62_20505 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. NH62_20505 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. NH62_20520 SM00479 NH62_20520 NH62_20524 SM00478 endonuclease III NH62_20524 SM00525 NH62_20524 NH62_20526 SM00900 NH62_20526 NH62_20532 SM00487 DEAD-like helicases superfamily NH62_20532 SM00490 helicase superfamily c-terminal domain NH62_20533 SM00382 ATPases associated with a variety of cellular activities NH62_20533 SM00448 cheY-homologous receiver domain NH62_20536 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_20537 SM00852 Probable molybdopterin binding domain NH62_20541 SM00267 diguanylate cyclase NH62_20542 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_20552 SM00226 Low molecular weight phosphatase family NH62_20561 SM00448 cheY-homologous receiver domain NH62_20565 SM00382 ATPases associated with a variety of cellular activities NH62_20567 SM00493 NH62_20567 NH62_20573 SM00344 helix_turn_helix ASNC type NH62_20578 SM00062 Bacterial periplasmic substrate-binding proteins NH62_20578 SM00267 diguanylate cyclase NH62_20579 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor NH62_20580 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NH62_20583 SM00495 Chitin-binding domain type 3 NH62_20583 SM00636 NH62_20583 NH62_20586 SM00342 helix_turn_helix, arabinose operon control protein NH62_20590 SM00448 cheY-homologous receiver domain NH62_20591 SM00448 cheY-homologous receiver domain NH62_20593 SM00387 Histidine kinase-like ATPases NH62_20593 SM00388 His Kinase A (phosphoacceptor) domain NH62_20594 SM00387 Histidine kinase-like ATPases NH62_20595 SM00052 Putative diguanylate phosphodiesterase NH62_20595 SM00448 cheY-homologous receiver domain NH62_20596 SM00448 cheY-homologous receiver domain NH62_20597 SM00387 Histidine kinase-like ATPases NH62_20598 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20603 SM00382 ATPases associated with a variety of cellular activities NH62_20604 SM00382 ATPases associated with a variety of cellular activities NH62_20612 SM00382 ATPases associated with a variety of cellular activities NH62_20613 SM00267 diguanylate cyclase NH62_20617 SM00382 ATPases associated with a variety of cellular activities NH62_20620 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_20620 SM00876 Biotin and Thiamin Synthesis associated domain NH62_20638 SM00528 Domain in histone-like proteins of HNS family NH62_20650 SM00357 Cold shock protein domain NH62_20652 SM00382 ATPases associated with a variety of cellular activities NH62_20652 SM01086 C-terminal, D2-small domain, of ClpB protein NH62_20663 SM00448 cheY-homologous receiver domain NH62_20664 SM00387 Histidine kinase-like ATPases NH62_20682 SM00481 DNA polymerase alpha chain like domain NH62_20684 SM00363 S4 RNA-binding domain NH62_20685 SM00382 ATPases associated with a variety of cellular activities NH62_20686 SM00382 ATPases associated with a variety of cellular activities NH62_20690 SM00267 diguanylate cyclase NH62_20693 SM00919 Malic enzyme, NAD binding domain NH62_20693 SM01274 NH62_20693 NH62_20698 SM00271 DnaJ molecular chaperone homology domain NH62_20698 SM00671 Sel1-like repeats. NH62_20704 SM00020 Trypsin-like serine protease NH62_20710 SM00345 helix_turn_helix gluconate operon transcriptional repressor NH62_20710 SM00866 NH62_20710 NH62_20713 SM00841 Elongation factor P, C-terminal NH62_20713 SM01185 NH62_20713 NH62_20715 SM00052 Putative diguanylate phosphodiesterase NH62_20716 SM00486 DNA polymerase type-B family NH62_20717 SM00421 helix_turn_helix, Lux Regulon NH62_20717 SM00448 cheY-homologous receiver domain NH62_20718 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NH62_20718 SM00465 GIY-YIG type nucleases (URI domain) NH62_20724 SM00267 diguanylate cyclase NH62_20727 SM00873 B3/4 domain NH62_20727 SM00874 tRNA synthetase B5 domain NH62_20727 SM00896 Ferredoxin-fold anticodon binding domain NH62_20728 SM00411 bacterial (prokaryotic) histone like domain NH62_20743 SM00855 Phosphoglycerate mutase family NH62_20746 SM00382 ATPases associated with a variety of cellular activities NH62_20749 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20749 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20749 SM01049 NH62_20749 NH62_20752 SM00852 Probable molybdopterin binding domain NH62_20758 SM00434 DNA Topoisomerase IV NH62_20759 SM00450 Rhodanese Homology Domain NH62_20760 SM00342 helix_turn_helix, arabinose operon control protein NH62_20770 SM00849 Metallo-beta-lactamase superfamily NH62_20776 SM00387 Histidine kinase-like ATPases NH62_20776 SM01049 NH62_20776 NH62_20777 SM00421 helix_turn_helix, Lux Regulon NH62_20777 SM00448 cheY-homologous receiver domain NH62_20778 SM00347 helix_turn_helix multiple antibiotic resistance protein NH62_20780 SM00495 Chitin-binding domain type 3 NH62_20786 SM00354 helix_turn _helix lactose operon repressor NH62_20789 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20789 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20790 SM00479 NH62_20790 NH62_20791 SM00100 Cyclic nucleotide-monophosphate binding domain NH62_20791 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_20793 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20793 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_20796 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20796 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20806 SM00091 PAS domain NH62_20806 SM00382 ATPases associated with a variety of cellular activities NH62_20810 SM01005 Alanine racemase, C-terminal domain NH62_20811 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20811 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20813 SM00387 Histidine kinase-like ATPases NH62_20814 SM00448 cheY-homologous receiver domain NH62_20817 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20817 SM00387 Histidine kinase-like ATPases NH62_20817 SM00388 His Kinase A (phosphoacceptor) domain NH62_20818 SM00448 cheY-homologous receiver domain NH62_20818 SM00862 Transcriptional regulatory protein, C terminal NH62_20823 SM00382 ATPases associated with a variety of cellular activities NH62_20830 SM00345 helix_turn_helix gluconate operon transcriptional repressor NH62_20830 SM00895 NH62_20830 NH62_20845 SM00448 cheY-homologous receiver domain NH62_20846 SM00073 Histidine Phosphotransfer domain NH62_20846 SM00091 PAS domain NH62_20846 SM00387 Histidine kinase-like ATPases NH62_20846 SM00388 His Kinase A (phosphoacceptor) domain NH62_20846 SM00448 cheY-homologous receiver domain NH62_20848 SM00267 diguanylate cyclase NH62_20849 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase NH62_20853 SM00382 ATPases associated with a variety of cellular activities NH62_20856 SM00062 Bacterial periplasmic substrate-binding proteins NH62_20862 SM00028 Tetratricopeptide repeats NH62_20862 SM00267 diguanylate cyclase NH62_20865 SM00267 diguanylate cyclase NH62_20867 SM00267 diguanylate cyclase NH62_20871 SM00267 diguanylate cyclase NH62_20871 SM01079 NH62_20871 NH62_20872 SM00479 NH62_20872 NH62_20876 SM00382 ATPases associated with a variety of cellular activities NH62_20876 SM00487 DEAD-like helicases superfamily NH62_20876 SM00490 helicase superfamily c-terminal domain NH62_20876 SM00847 Helicase associated domain (HA2) Add an annotation NH62_20884 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20885 SM00448 cheY-homologous receiver domain NH62_20887 SM00073 Histidine Phosphotransfer domain NH62_20887 SM00260 Two component signalling adaptor domain NH62_20887 SM00387 Histidine kinase-like ATPases NH62_20887 SM01231 NH62_20887 NH62_20888 SM00448 cheY-homologous receiver domain NH62_20889 SM00138 Methyltransferase, chemotaxis proteins NH62_20891 SM00448 cheY-homologous receiver domain NH62_20892 SM00260 Two component signalling adaptor domain NH62_20893 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20894 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20894 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20895 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NH62_20895 SM00091 PAS domain NH62_20895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20896 SM00487 DEAD-like helicases superfamily NH62_20896 SM00490 helicase superfamily c-terminal domain NH62_20901 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_20901 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_20916 SM00382 ATPases associated with a variety of cellular activities NH62_20922 SM00100 Cyclic nucleotide-monophosphate binding domain NH62_20922 SM00419 helix_turn_helix, cAMP Regulatory protein NH62_20932 SM00897 FIST N domain NH62_20932 SM01204 NH62_20932 NH62_20933 SM00387 Histidine kinase-like ATPases NH62_20933 SM00388 His Kinase A (phosphoacceptor) domain NH62_20933 SM00448 cheY-homologous receiver domain NH62_20934 SM00382 ATPases associated with a variety of cellular activities NH62_20936 SM00382 ATPases associated with a variety of cellular activities NH62_20947 SM00382 ATPases associated with a variety of cellular activities NH62_20949 SM00981 NH62_20949 NH62_20956 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NH62_20956 SM00245 tail specific protease NH62_20957 SM00945 ProQ/FINO family NH62_20959 SM00382 ATPases associated with a variety of cellular activities NH62_20963 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_20972 SM00926 Molybdopterin oxidoreductase Fe4S4 domain NH62_20980 SM00382 ATPases associated with a variety of cellular activities NH62_20981 SM00387 Histidine kinase-like ATPases NH62_20981 SM00388 His Kinase A (phosphoacceptor) domain NH62_20982 SM00382 ATPases associated with a variety of cellular activities NH62_20982 SM00448 cheY-homologous receiver domain NH62_20985 SM00382 ATPases associated with a variety of cellular activities NH62_20987 SM00852 Probable molybdopterin binding domain NH62_20990 SM01144 NH62_20990 NH62_20992 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_21009 SM00382 ATPases associated with a variety of cellular activities NH62_21010 SM00420 helix_turn_helix, Deoxyribose operon repressor NH62_21010 SM01134 NH62_21010 NH62_21014 SM00354 helix_turn _helix lactose operon repressor NH62_21018 SM00849 Metallo-beta-lactamase superfamily NH62_21023 SM00382 ATPases associated with a variety of cellular activities NH62_21030 SM01022 NH62_21030 NH62_21037 SM00248 ankyrin repeats NH62_21038 SM01060 NH62_21038 NH62_21043 SM00822 NH62_21043 NH62_21044 SM00052 Putative diguanylate phosphodiesterase NH62_21045 SM00267 diguanylate cyclase NH62_21054 SM00267 diguanylate cyclase NH62_21057 SM00260 Two component signalling adaptor domain NH62_21057 SM00448 cheY-homologous receiver domain NH62_21059 SM00448 cheY-homologous receiver domain NH62_21060 SM00387 Histidine kinase-like ATPases NH62_21068 SM00028 Tetratricopeptide repeats NH62_21068 SM00386 HAT (Half-A-TPR) repeats NH62_21076 SM00112 Cadherin repeats. NH62_21085 SM00382 ATPases associated with a variety of cellular activities NH62_21090 SM00363 S4 RNA-binding domain NH62_21091 SM00487 DEAD-like helicases superfamily NH62_21091 SM00490 helicase superfamily c-terminal domain NH62_21093 SM00448 cheY-homologous receiver domain NH62_21093 SM00862 Transcriptional regulatory protein, C terminal NH62_21094 SM00387 Histidine kinase-like ATPases NH62_21096 SM00052 Putative diguanylate phosphodiesterase NH62_21098 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_21098 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_21103 SM00020 Trypsin-like serine protease NH62_21105 SM00448 cheY-homologous receiver domain NH62_21106 SM00052 Putative diguanylate phosphodiesterase NH62_21106 SM00421 helix_turn_helix, Lux Regulon NH62_21106 SM00448 cheY-homologous receiver domain NH62_21107 SM00062 Bacterial periplasmic substrate-binding proteins NH62_21107 SM00073 Histidine Phosphotransfer domain NH62_21107 SM00387 Histidine kinase-like ATPases NH62_21107 SM00388 His Kinase A (phosphoacceptor) domain NH62_21107 SM00448 cheY-homologous receiver domain NH62_21107 SM00918 Ligated ion channel L-glutamate- and glycine-binding site NH62_21108 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_21112 SM00382 ATPases associated with a variety of cellular activities NH62_21119 SM00382 ATPases associated with a variety of cellular activities NH62_21123 SM00155 Phospholipase D. Active site motifs. NH62_21133 SM00382 ATPases associated with a variety of cellular activities NH62_21137 SM00382 ATPases associated with a variety of cellular activities NH62_21138 SM00382 ATPases associated with a variety of cellular activities NH62_21141 SM01131 NH62_21141 NH62_21162 SM00052 Putative diguanylate phosphodiesterase NH62_21162 SM00091 PAS domain NH62_21163 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_21165 SM00344 helix_turn_helix ASNC type NH62_21171 SM00448 cheY-homologous receiver domain NH62_21171 SM00862 Transcriptional regulatory protein, C terminal NH62_21173 SM00354 helix_turn _helix lactose operon repressor NH62_21180 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NH62_21180 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NH62_21180 SM00493 NH62_21180 NH62_21185 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_21205 SM00490 helicase superfamily c-terminal domain NH62_21214 SM00382 ATPases associated with a variety of cellular activities NH62_21221 SM00342 helix_turn_helix, arabinose operon control protein NH62_21225 SM00387 Histidine kinase-like ATPases NH62_21225 SM00388 His Kinase A (phosphoacceptor) domain NH62_21225 SM00448 cheY-homologous receiver domain NH62_21240 SM00382 ATPases associated with a variety of cellular activities NH62_21241 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NH62_21243 SM00840 NH62_21243 NH62_21246 SM00052 Putative diguanylate phosphodiesterase NH62_21250 SM00491 NH62_21250 NH62_21254 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_21254 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_21258 SM00062 Bacterial periplasmic substrate-binding proteins NH62_21258 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. NH62_21259 SM00382 ATPases associated with a variety of cellular activities NH62_21264 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_21264 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_21268 SM00763 PrkA AAA domain NH62_21274 SM00382 ATPases associated with a variety of cellular activities NH62_21275 SM00849 Metallo-beta-lactamase superfamily NH62_21278 SM00382 ATPases associated with a variety of cellular activities NH62_21281 SM00487 DEAD-like helicases superfamily NH62_21281 SM00490 helicase superfamily c-terminal domain NH62_21281 SM00982 NH62_21281 NH62_21281 SM01058 CarD-like/TRCF domain NH62_21293 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_21293 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_21295 SM00345 helix_turn_helix gluconate operon transcriptional repressor NH62_21298 SM00843 NH62_21298 NH62_21299 SM00344 helix_turn_helix ASNC type NH62_21300 SM01002 Alanine dehydrogenase/PNT, C-terminal domain NH62_21300 SM01003 Alanine dehydrogenase/PNT, N-terminal domain NH62_21305 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family NH62_21306 SM00028 Tetratricopeptide repeats NH62_21308 SM00411 bacterial (prokaryotic) histone like domain NH62_21309 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_21311 SM00278 Helix-hairpin-helix DNA-binding motif class 1 NH62_21313 SM00411 bacterial (prokaryotic) histone like domain NH62_21314 SM00382 ATPases associated with a variety of cellular activities NH62_21314 SM00464 Found in ATP-dependent protease La (LON) NH62_21315 SM00382 ATPases associated with a variety of cellular activities NH62_21315 SM00994 ClpX C4-type zinc finger NH62_21315 SM01086 C-terminal, D2-small domain, of ClpB protein NH62_21319 SM00387 Histidine kinase-like ATPases NH62_21319 SM00388 His Kinase A (phosphoacceptor) domain NH62_21320 SM00382 ATPases associated with a variety of cellular activities NH62_21320 SM00448 cheY-homologous receiver domain NH62_21327 SM00052 Putative diguanylate phosphodiesterase NH62_21327 SM00267 diguanylate cyclase NH62_21330 SM00563 Phosphate acyltransferases NH62_21343 SM00495 Chitin-binding domain type 3 NH62_21343 SM00636 NH62_21343 NH62_21353 SM00978 NH62_21353 NH62_21357 SM00563 Phosphate acyltransferases NH62_21358 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_21358 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_21359 SM00530 Helix-turn-helix XRE-family like proteins NH62_21362 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain NH62_21368 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_21369 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_21370 SM01144 NH62_21370 NH62_21373 SM00474 3'-5' exonuclease NH62_21379 SM00487 DEAD-like helicases superfamily NH62_21379 SM00491 NH62_21379 NH62_21384 SM00870 NH62_21384 NH62_21388 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NH62_21394 SM00260 Two component signalling adaptor domain NH62_21394 SM00448 cheY-homologous receiver domain NH62_21408 SM00825 Beta-ketoacyl synthase NH62_21410 SM00822 NH62_21410 NH62_21411 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. NH62_21418 SM00363 S4 RNA-binding domain NH62_21419 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_21424 SM00859 Semialdehyde dehydrogenase, NAD binding domain NH62_21426 SM00073 Histidine Phosphotransfer domain NH62_21436 SM01022 NH62_21436 NH62_21446 SM01040 BRO family, N-terminal domain NH62_21480 SM00883 Chaperonin 10 Kd subunit NH62_21486 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain NH62_21486 SM00437 Bacterial DNA topoisomerase I DNA-binding domain NH62_21486 SM00493 NH62_21486 NH62_21500 SM00382 ATPases associated with a variety of cellular activities NH62_21502 SM00260 Two component signalling adaptor domain NH62_21503 SM00260 Two component signalling adaptor domain NH62_21505 SM00448 cheY-homologous receiver domain NH62_21506 SM00073 Histidine Phosphotransfer domain NH62_21506 SM00260 Two component signalling adaptor domain NH62_21506 SM00387 Histidine kinase-like ATPases NH62_21506 SM01231 NH62_21506 NH62_21508 SM00448 cheY-homologous receiver domain NH62_21511 SM00382 ATPases associated with a variety of cellular activities NH62_21511 SM00962 SRP54-type protein, GTPase domain NH62_21513 SM00855 Phosphoglycerate mutase family NH62_21516 SM00836 DALR anticodon binding domain NH62_21516 SM01016 Arginyl tRNA synthetase N terminal dom NH62_21520 SM00899 NH62_21520 NH62_21521 SM00342 helix_turn_helix, arabinose operon control protein NH62_21523 SM00382 ATPases associated with a variety of cellular activities NH62_21525 SM00881 CoA binding domain NH62_21529 SM00861 Transketolase, pyrimidine binding domain NH62_21548 SM00859 Semialdehyde dehydrogenase, NAD binding domain NH62_21550 SM00825 Beta-ketoacyl synthase NH62_21558 SM00463 Small MutS-related domain NH62_21569 SM00382 ATPases associated with a variety of cellular activities NH62_21574 SM00382 ATPases associated with a variety of cellular activities NH62_21574 SM00448 cheY-homologous receiver domain NH62_21575 SM00091 PAS domain NH62_21575 SM00387 Histidine kinase-like ATPases NH62_21575 SM00388 His Kinase A (phosphoacceptor) domain NH62_21576 SM00382 ATPases associated with a variety of cellular activities NH62_21593 SM01130 NH62_21593 NH62_21596 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_21596 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_21599 SM00028 Tetratricopeptide repeats NH62_21611 SM00937 NH62_21611 NH62_21615 SM01400 NH62_21615 NH62_21638 SM00047 Lysozyme subfamily 2 NH62_21647 SM00138 Methyltransferase, chemotaxis proteins NH62_21648 SM00260 Two component signalling adaptor domain NH62_21648 SM00448 cheY-homologous receiver domain NH62_21649 SM00858 NH62_21649 NH62_21663 SM01081 Putative carbohydrate binding domain NH62_21667 SM00463 Small MutS-related domain NH62_21668 SM00363 S4 RNA-binding domain NH62_21669 SM00267 diguanylate cyclase NH62_21678 SM00479 NH62_21678 NH62_21681 SM00849 Metallo-beta-lactamase superfamily NH62_21683 SM00257 Lysin motif NH62_21685 SM00938 Nitrogen regulatory protein P-II NH62_21688 SM00977 TilS substrate C-terminal domain NH62_21690 SM00481 DNA polymerase alpha chain like domain NH62_21696 SM00935 Outer membrane protein (OmpH-like) NH62_21699 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. NH62_21708 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_21719 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase NH62_21730 SM00267 diguanylate cyclase NH62_21738 SM00900 NH62_21738 NH62_21748 SM00464 Found in ATP-dependent protease La (LON) NH62_21755 SM00925 MltA specific insert domain NH62_21772 SM00354 helix_turn _helix lactose operon repressor NH62_21773 SM01038 Beta galactosidase small chain NH62_21777 SM00838 Elongation factor G C-terminus NH62_21777 SM00889 Elongation factor G, domain IV NH62_21778 SM00382 ATPases associated with a variety of cellular activities NH62_21785 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain NH62_21786 SM01133 NH62_21786 NH62_21794 SM00986 Uracil DNA glycosylase superfamily NH62_21794 SM00987 UreE urease accessory protein, C-terminal domain NH62_21795 SM00518 AP endonuclease family 2 NH62_21803 SM00448 cheY-homologous receiver domain NH62_21803 SM00862 Transcriptional regulatory protein, C terminal NH62_21804 SM00073 Histidine Phosphotransfer domain NH62_21804 SM00091 PAS domain NH62_21804 SM00387 Histidine kinase-like ATPases NH62_21804 SM00388 His Kinase A (phosphoacceptor) domain NH62_21804 SM00448 cheY-homologous receiver domain NH62_21805 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NH62_21805 SM00091 PAS domain NH62_21805 SM00267 diguanylate cyclase NH62_21806 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_21819 SM00382 ATPases associated with a variety of cellular activities NH62_21820 SM00507 HNH nucleases NH62_21823 SM00851 MGS-like domain NH62_21823 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain NH62_21824 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain NH62_21827 SM00957 SecA DEAD-like domain NH62_21827 SM00958 SecA preprotein cross-linking domain NH62_21830 SM00864 Tubulin/FtsZ family, GTPase domain NH62_21830 SM00865 Tubulin/FtsZ family, C-terminal domain NH62_21831 SM00842 Cell division protein FtsA NH62_21846 SM00345 helix_turn_helix gluconate operon transcriptional repressor NH62_21846 SM00895 NH62_21846 NH62_21852 SM00644 NH62_21852 NH62_21861 SM00434 DNA Topoisomerase IV NH62_21862 SM00387 Histidine kinase-like ATPases NH62_21862 SM00433 TopoisomeraseII NH62_21870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_21870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_21872 SM00880 NH62_21872 NH62_21872 SM01118 NH62_21872 NH62_21875 SM00287 Bacterial SH3 domain homologues NH62_21877 SM00382 ATPases associated with a variety of cellular activities NH62_21879 SM01192 NH62_21879 NH62_21879 SM01193 NH62_21879 NH62_21882 SM00954 Region found in RelA / SpoT proteins NH62_21884 SM00073 Histidine Phosphotransfer domain NH62_21884 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_21884 SM00387 Histidine kinase-like ATPases NH62_21884 SM00388 His Kinase A (phosphoacceptor) domain NH62_21884 SM00448 cheY-homologous receiver domain NH62_21885 SM00267 diguanylate cyclase NH62_21892 SM00358 Double-stranded RNA binding motif NH62_21892 SM00535 Ribonuclease III family NH62_21916 SM00014 Acid phosphatase homologues NH62_21918 SM00917 LeuA allosteric (dimerisation) domain NH62_21919 SM01329 NH62_21919 NH62_21930 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_21940 SM00487 DEAD-like helicases superfamily NH62_21940 SM00490 helicase superfamily c-terminal domain NH62_21941 SM00670 Large family of predicted nucleotide-binding domains NH62_21946 SM00563 Phosphate acyltransferases NH62_21953 SM00382 ATPases associated with a variety of cellular activities NH62_21955 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_21959 SM00382 ATPases associated with a variety of cellular activities NH62_21965 SM00924 MgtE intracellular N domain NH62_21968 SM00382 ATPases associated with a variety of cellular activities NH62_21982 SM00382 ATPases associated with a variety of cellular activities NH62_21992 SM00487 DEAD-like helicases superfamily NH62_21992 SM00490 helicase superfamily c-terminal domain NH62_21997 SM01321 NH62_21997 NH62_22000 SM00662 RNA polymerases D NH62_22001 SM00363 S4 RNA-binding domain NH62_22001 SM01390 NH62_22001 NH62_22014 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. NH62_22015 SM01374 NH62_22015 NH62_22019 SM00322 K homology RNA-binding domain NH62_22022 SM01382 NH62_22022 NH62_22022 SM01383 NH62_22022 NH62_22026 SM01403 NH62_22026 NH62_22027 SM00967 RNA 2'-O ribose methyltransferase substrate binding NH62_22028 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_22028 SM00357 Cold shock protein domain NH62_22028 SM00955 NH62_22028 NH62_22030 SM00671 Sel1-like repeats. NH62_22031 SM00788 Adenylosuccinate synthetase NH62_22037 SM00382 ATPases associated with a variety of cellular activities NH62_22042 SM00100 Cyclic nucleotide-monophosphate binding domain NH62_22042 SM00419 helix_turn_helix, cAMP Regulatory protein NH62_22043 SM01150 NH62_22043 NH62_22048 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_22058 SM00965 Secretin and TonB N terminus short domain NH62_22071 SM00859 Semialdehyde dehydrogenase, NAD binding domain NH62_22075 SM00971 Serine acetyltransferase, N-terminal NH62_22078 SM00450 Rhodanese Homology Domain NH62_22084 SM00841 Elongation factor P, C-terminal NH62_22084 SM01185 NH62_22084 NH62_22088 SM00883 Chaperonin 10 Kd subunit NH62_22097 SM00382 ATPases associated with a variety of cellular activities NH62_22097 SM01086 C-terminal, D2-small domain, of ClpB protein NH62_22100 SM00354 helix_turn _helix lactose operon repressor NH62_22101 SM00487 DEAD-like helicases superfamily NH62_22101 SM00490 helicase superfamily c-terminal domain NH62_22103 SM00919 Malic enzyme, NAD binding domain NH62_22103 SM01274 NH62_22103 NH62_22113 SM00448 cheY-homologous receiver domain NH62_22113 SM00862 Transcriptional regulatory protein, C terminal NH62_22114 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_22114 SM00387 Histidine kinase-like ATPases NH62_22114 SM00388 His Kinase A (phosphoacceptor) domain NH62_22118 SM00267 diguanylate cyclase NH62_22123 SM00421 helix_turn_helix, Lux Regulon NH62_22123 SM00448 cheY-homologous receiver domain NH62_22124 SM01091 Transporter associated domain NH62_22128 SM00072 Guanylate kinase homologues. NH62_22129 SM01409 NH62_22129 NH62_22130 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. NH62_22130 SM00954 Region found in RelA / SpoT proteins NH62_22131 SM00487 DEAD-like helicases superfamily NH62_22131 SM00490 helicase superfamily c-terminal domain NH62_22133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_22133 SM00387 Histidine kinase-like ATPases NH62_22133 SM00388 His Kinase A (phosphoacceptor) domain NH62_22134 SM00448 cheY-homologous receiver domain NH62_22134 SM00862 Transcriptional regulatory protein, C terminal NH62_22135 SM00267 diguanylate cyclase NH62_22137 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_22137 SM00732 Likely ribonuclease with RNase H fold. NH62_22153 SM00382 ATPases associated with a variety of cellular activities NH62_22156 SM00363 S4 RNA-binding domain NH62_22166 SM01230 NH62_22166 NH62_22168 SM00091 PAS domain NH62_22168 SM00387 Histidine kinase-like ATPases NH62_22168 SM00388 His Kinase A (phosphoacceptor) domain NH62_22169 SM00382 ATPases associated with a variety of cellular activities NH62_22169 SM00448 cheY-homologous receiver domain NH62_22170 SM00052 Putative diguanylate phosphodiesterase NH62_22170 SM00267 diguanylate cyclase NH62_22197 SM01005 Alanine racemase, C-terminal domain NH62_22198 SM00382 ATPases associated with a variety of cellular activities NH62_22207 SM00838 Elongation factor G C-terminus NH62_22207 SM00889 Elongation factor G, domain IV NH62_22215 SM00320 WD40 repeats NH62_22218 SM00244 prohibitin homologues NH62_22219 SM00244 prohibitin homologues NH62_22223 SM00853 MutL C terminal dimerisation domain NH62_22223 SM01340 NH62_22223 NH62_22224 SM00257 Lysin motif NH62_22224 SM00646 NH62_22224 NH62_22236 SM00479 NH62_22236 NH62_22249 SM00663 RNA polymerase I subunit A N-terminus NH62_22254 SM00649 Ribosomal protein L11/L12 NH62_22255 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. NH62_22255 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. NH62_22266 SM00155 Phospholipase D. Active site motifs. NH62_22277 SM00357 Cold shock protein domain NH62_22277 SM00382 ATPases associated with a variety of cellular activities NH62_22277 SM00959 Rho termination factor, N-terminal domain NH62_22279 SM00487 DEAD-like helicases superfamily NH62_22279 SM00490 helicase superfamily c-terminal domain NH62_22281 SM00387 Histidine kinase-like ATPases NH62_22281 SM00388 His Kinase A (phosphoacceptor) domain NH62_22281 SM00448 cheY-homologous receiver domain NH62_22283 SM00116 Domain in cystathionine beta-synthase and other proteins. NH62_22284 SM00479 NH62_22284 NH62_22288 SM00878 Biotin carboxylase C-terminal domain NH62_22293 SM00354 helix_turn _helix lactose operon repressor NH62_22300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_22300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_22300 SM01049 NH62_22300 NH62_22303 SM00862 Transcriptional regulatory protein, C terminal NH62_22304 SM00422 helix_turn_helix, mercury resistance NH62_22305 SM00798 AICARFT/IMPCHase bienzyme NH62_22305 SM00851 MGS-like domain NH62_22306 SM01209 NH62_22306 NH62_22306 SM01210 NH62_22306 NH62_22308 SM00411 bacterial (prokaryotic) histone like domain NH62_22314 SM00986 Uracil DNA glycosylase superfamily NH62_22314 SM00987 UreE urease accessory protein, C-terminal domain NH62_22316 SM00849 Metallo-beta-lactamase superfamily NH62_22316 SM01027 Beta-Casp domain NH62_22329 SM00382 ATPases associated with a variety of cellular activities NH62_22355 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain NH62_22355 SM01232 NH62_22355 NH62_22359 SM00530 Helix-turn-helix XRE-family like proteins NH62_22379 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_22379 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain NH62_22379 SM01049 NH62_22379 NH62_22395 SM00382 ATPases associated with a variety of cellular activities NH62_22397 SM00382 ATPases associated with a variety of cellular activities NH62_22400 SM00341 Helicase and RNase D C-terminal NH62_22400 SM00487 DEAD-like helicases superfamily NH62_22400 SM00490 helicase superfamily c-terminal domain NH62_22400 SM00956 NH62_22400 NH62_22403 SM00342 helix_turn_helix, arabinose operon control protein NH62_22413 SM00382 ATPases associated with a variety of cellular activities NH62_22448 SM00382 ATPases associated with a variety of cellular activities NH62_22456 SM00470 ParB-like nuclease domain NH62_22459 SM01228 NH62_22459 NH62_22465 SM00382 ATPases associated with a variety of cellular activities NH62_22467 SM00062 Bacterial periplasmic substrate-binding proteins NH62_22468 SM00382 ATPases associated with a variety of cellular activities NH62_22468 SM00760 Bacterial dnaA protein helix-turn-helix domain NH62_22469 SM00480 DNA polymerase III beta subunit NH62_22471 SM00387 Histidine kinase-like ATPases NH62_22471 SM00433 TopoisomeraseII NH62_22482 SM00829 Enoylreductase NH62_22488 SM00382 ATPases associated with a variety of cellular activities NH62_22489 SM00563 Phosphate acyltransferases NH62_22502 SM00257 Lysin motif NH62_22507 SM01001 AIR carboxylase NH62_22525 SM00876 Biotin and Thiamin Synthesis associated domain NH62_22530 SM00344 helix_turn_helix ASNC type NH62_22531 SM00052 Putative diguanylate phosphodiesterase NH62_22531 SM00091 PAS domain NH62_22531 SM00267 diguanylate cyclase NH62_22550 SM00563 Phosphate acyltransferases NH62_22554 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) NH62_22554 SM00091 PAS domain NH62_22554 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_22556 SM00450 Rhodanese Homology Domain NH62_22558 SM01004 Delta-aminolevulinic acid dehydratase NH62_22560 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs NH62_22560 SM00474 3'-5' exonuclease NH62_22560 SM00475 5'-3' exonuclease NH62_22560 SM00482 DNA polymerase A domain NH62_22566 SM00729 Elongator protein 3, MiaB family, Radical SAM NH62_22572 SM01219 NH62_22572 NH62_22573 SM01219 NH62_22573 NH62_22579 SM00052 Putative diguanylate phosphodiesterase NH62_22579 SM00267 diguanylate cyclase NH62_22579 SM00897 FIST N domain NH62_22579 SM01204 NH62_22579 NH62_22580 SM01144 NH62_22580 NH62_22592 SM00382 ATPases associated with a variety of cellular activities NH62_22592 SM00962 SRP54-type protein, GTPase domain NH62_22592 SM00963 SRP54-type protein, helical bundle domain NH62_22593 SM00382 ATPases associated with a variety of cellular activities NH62_22603 SM00360 RNA recognition motif NH62_22616 SM01018 B12 binding domain NH62_22622 SM00421 helix_turn_helix, Lux Regulon NH62_22624 SM00052 Putative diguanylate phosphodiesterase NH62_22624 SM00267 diguanylate cyclase NH62_22628 SM00965 Secretin and TonB N terminus short domain NH62_22630 SM00028 Tetratricopeptide repeats NH62_22631 SM00382 ATPases associated with a variety of cellular activities NH62_22645 SM00316 Ribosomal protein S1-like RNA-binding domain NH62_22668 SM00650 Ribosomal RNA adenine dimethylases NH62_22672 SM00271 DnaJ molecular chaperone homology domain NH62_22678 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). NH62_22678 SM01049 NH62_22678