locus-tag	class	description
J9265_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
J9265_00010	COG0592	DNA-directed DNA polymerase activity
J9265_00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
J9265_00020	COG0187	DNA topoisomerase II activity
J9265_00030	COG0071	Belongs to the small heat shock protein (HSP20) family
J9265_00035	COG3977	Valine--pyruvate aminotransferase
J9265_00040	COG0751	glycine-tRNA ligase activity
J9265_00045	COG0752	glycyl-tRNA synthetase alpha subunit
J9265_00050	COG2119	membrane
J9265_00060	COG0425	Belongs to the sulfur carrier protein TusA family
J9265_00070	COG0604	alcohol dehydrogenase
J9265_00080	COG0129	dihydroxy-acid dehydratase activity
J9265_00085	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J9265_00100	COG0606	chelatase, subunit chli
J9265_00105	COG0204	Acyl-transferase
J9265_00110	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J9265_00115	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
J9265_00125	COG3084	Protein conserved in bacteria
J9265_00130	COG4326	sporulation control protein
J9265_00135	COG1272	protein, Hemolysin III
J9265_00145	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J9265_00150	COG0569	domain protein
J9265_00155	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
J9265_00155	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J9265_00160	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
J9265_00165	COG0242	peptide deformylase activity
J9265_00170	COG1652	LysM domain
J9265_00175	COG0758	DNA mediated transformation
J9265_00180	COG2922	Belongs to the Smg family
J9265_00185	COG0551	DNA topoisomerase type I activity
J9265_00190	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
J9265_00195	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
J9265_00200	COG0009	L-threonylcarbamoyladenylate synthase
J9265_00205	COG0408	coproporphyrinogen oxidase activity
J9265_00210	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
J9265_00220	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
J9265_00255	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
J9265_00265	COG0812	UDP-N-acetylmuramate dehydrogenase activity
J9265_00275	COG1072	(Pantothenic acid kinase))
J9265_00300	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J9265_00305	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J9265_00310	COG0250	Participates in transcription elongation, termination and antitermination
J9265_00315	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
J9265_00325	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
J9265_00330	COG0222	ribosome binding
J9265_00335	COG0085	RNA polymerase activity
J9265_00340	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
J9265_00345	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
J9265_00350	COG2816	NAD+ diphosphatase activity
J9265_00355	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
J9265_00370	COG4942	peptidase
J9265_00375	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
J9265_00385	COG0471	metal ion transport
J9265_00390	COG0688	phosphatidylethanolamine metabolic process
J9265_00395	COG1162	GTPase activity
J9265_00400	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
J9265_00455	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
J9265_00460	COG0802	atpase or kinase
J9265_00470	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
J9265_00475	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
J9265_00480	COG1923	regulation of RNA biosynthetic process
J9265_00485	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
J9265_00490	COG0330	HflC and HflK could
J9265_00495	COG0330	HflC and HflK could
J9265_00500	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
J9265_00505	COG2900	Belongs to the SlyX family
J9265_00515	COG0545	Peptidyl-prolyl cis-trans isomerase
J9265_00520	COG2964	Protein conserved in bacteria
J9265_00525	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
J9265_00530	COG2923	Belongs to the DsrF TusC family
J9265_00545	COG0049	tRNA binding
J9265_00550	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J9265_00555	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
J9265_00560	COG2906	2 iron, 2 sulfur cluster binding
J9265_00570	COG0360	Binds together with S18 to 16S ribosomal RNA
J9265_00575	COG2965	DNA replication, synthesis of RNA primer
J9265_00580	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
J9265_00585	COG0359	binds to the 23S rRNA
J9265_00600	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J9265_00605	COG0432	Pfam Uncharacterised protein family UPF0047
J9265_00625	COG0735	belongs to the Fur family
J9265_00630	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J9265_00655	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J9265_00665	COG0175	sulfate reduction
J9265_00735	COG0646	methionine synthase
J9265_00735	COG1410	methionine synthase
J9265_00740	COG0527	aspartate kinase activity
J9265_00745	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J9265_00755	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
J9265_00770	COG0629	single-stranded DNA binding
J9265_00775	COG2200	EAL domain
J9265_00775	COG2199	diguanylate cyclase activity
J9265_00800	COG3267	Type II secretory pathway component ExeA
J9265_00800	COG3409	Peptidoglycan-binding domain 1 protein
J9265_00810	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J9265_00815	COG1459	type II secretion system
J9265_00825	COG2165	general secretion pathway protein
J9265_00830	COG2165	general secretion pathway protein
J9265_00860	COG1077	Cell shape determining protein MreB Mrl
J9265_00865	COG1792	Involved in formation and maintenance of cell shape
J9265_00870	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
J9265_00875	COG0424	maF-like protein
J9265_00885	COG3164	Protein of unknown function
J9265_00890	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
J9265_00895	COG0312	modulator of DNA gyrase
J9265_00900	COG2235	arginine
J9265_00920	COG0589	response to stress
J9265_00930	COG2358	TRAP transporter, solute receptor (TAXI family
J9265_00935	COG1438	arginine binding
J9265_00940	COG0039	L-malate dehydrogenase activity
J9265_00945	COG0531	amino acid
J9265_00950	COG0142	geranyltranstransferase activity
J9265_00955	COG0261	This protein binds to 23S rRNA in the presence of protein L20
J9265_00960	COG0211	Belongs to the bacterial ribosomal protein bL27 family
J9265_00965	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
J9265_00970	COG2966	Psort location CytoplasmicMembrane, score
J9265_00975	COG3610	response to peptide
J9265_00985	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
J9265_00990	COG2967	ApaG domain
J9265_00995	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
J9265_01000	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
J9265_01005	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J9265_01010	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
J9265_01015	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
J9265_01070	COG0741	lytic transglycosylase activity
J9265_01075	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
J9265_01080	COG1194	a g-specific adenine glycosylase
J9265_01090	COG2066	Belongs to the glutaminase family
J9265_01095	COG0635	Involved in the biosynthesis of porphyrin-containing compound
J9265_01100	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
J9265_01110	COG1872	DUF167
J9265_01115	COG0762	integral membrane protein
J9265_01120	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
J9265_01125	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
J9265_01145	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J9265_01150	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
J9265_01155	COG1678	Uncharacterized ACR, COG1678
J9265_01160	COG0189	ligase activity
J9265_01165	COG1385	rRNA (uridine-N3-)-methyltransferase activity
J9265_01170	COG2356	endonuclease I
J9265_01180	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
J9265_01185	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J9265_01190	COG0583	DNA-binding transcription factor activity
J9265_01195	COG4771	TonB-dependent receptor
J9265_01200	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J9265_01205	COG0126	phosphoglycerate kinase activity
J9265_01210	COG0191	fructose-bisphosphate aldolase activity
J9265_01215	COG0668	transmembrane transport
J9265_01220	COG1279	arginine transmembrane transporter activity
J9265_01240	COG1349	DNA-binding transcription factor activity
J9265_01245	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
J9265_01250	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J9265_01305	COG0328	RNA-DNA hybrid ribonuclease activity
J9265_01325	COG4969	Belongs to the N-Me-Phe pilin family
J9265_01335	COG0739	heme binding
J9265_01365	COG2003	Belongs to the UPF0758 family
J9265_01390	COG0582	viral genome integration into host DNA
J9265_01405	COG0358	DNA primase activity
J9265_01410	COG1610	YqeY-like protein
J9265_01415	COG0828	Belongs to the bacterial ribosomal protein bS21 family
J9265_01420	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
J9265_01430	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
J9265_01435	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
J9265_01440	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J9265_01445	COG1968	undecaprenyl-diphosphatase activity
J9265_01450	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
J9265_01455	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
J9265_01460	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
J9265_01465	COG0585	pseudouridine synthase activity
J9265_01470	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
J9265_01475	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
J9265_01485	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J9265_01490	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
J9265_01510	COG4208	sulfate ABC transporter
J9265_01515	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
J9265_01525	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
J9265_01535	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
J9265_01540	COG0527	aspartate kinase activity
J9265_01545	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
J9265_01590	COG3630	sodium ion export across plasma membrane
J9265_01595	COG0511	ligase activity, forming carbon-carbon bonds
J9265_01595	COG5016	pyruvate
J9265_01600	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
J9265_01610	COG1238	metal cluster binding
J9265_01615	COG0612	Peptidase, M16
J9265_01620	COG2918	glutathione biosynthetic process
J9265_01625	COG1854	S-ribosylhomocysteine lyase activity
J9265_01630	COG4536	flavin adenine dinucleotide binding
J9265_01635	COG4137	Cytochrome C assembly protein
J9265_01640	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
J9265_01645	COG0228	four-way junction DNA binding
J9265_01650	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
J9265_01655	COG0336	Belongs to the RNA methyltransferase TrmD family
J9265_01660	COG0335	large ribosomal subunit rRNA binding
J9265_01665	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J9265_01670	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
J9265_01680	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
J9265_01685	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
J9265_01690	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J9265_01695	COG0723	plastoquinol--plastocyanin reductase activity
J9265_01700	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
J9265_01705	COG2857	Cytochrome c1
J9265_01710	COG0625	glutathione transferase activity
J9265_01715	COG2969	positive regulation of protein catabolic process
J9265_01720	COG2823	Periplasmic or secreted lipoprotein
J9265_01725	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J9265_01730	COG0792	nuclease activity
J9265_01735	COG3107	peptidoglycan biosynthetic process
J9265_01740	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
J9265_01755	COG0288	reversible hydration of carbon dioxide
J9265_01760	COG0659	secondary active sulfate transmembrane transporter activity
J9265_01765	COG1131	(ABC) transporter
J9265_01770	COG0842	Transport permease protein
J9265_01775	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
J9265_01780	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
J9265_01785	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
J9265_01795	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J9265_01805	COG1489	DNA binding
J9265_01815	COG1643	Atp-dependent helicase
J9265_01820	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
J9265_01825	COG1752	Esterase of the alpha-beta hydrolase superfamily
J9265_01830	COG1049	propionate catabolic process, 2-methylcitrate cycle
J9265_01835	COG3112	Uncharacterised protein family (UPF0231)
J9265_01840	COG0347	Belongs to the P(II) protein family
J9265_01845	COG0004	ammonium transporteR
J9265_01850	COG1840	ABC-type Fe3 transport system, periplasmic component
J9265_01860	COG3842	ATPase activity
J9265_01880	COG2971	BadF BadG BcrA BcrD
J9265_01890	COG4608	Belongs to the ABC transporter superfamily
J9265_01895	COG0444	Belongs to the ABC transporter superfamily
J9265_01900	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J9265_01905	COG0601	transmembrane transport
J9265_01910	COG0747	negative chemotaxis
J9265_01915	COG2205	protein histidine kinase activity
J9265_01915	COG0784	Response regulator, receiver
J9265_01920	COG2813	Specifically methylates the guanine in position
J9265_01925	COG0628	permease
J9265_01930	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
J9265_01935	COG0316	Belongs to the HesB IscA family
J9265_01950	COG0739	heme binding
J9265_01955	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
J9265_01960	COG2027	D-alanyl-D-alanine carboxypeptidase
J9265_01965	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J9265_01970	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J9265_01975	COG1534	Rna-binding protein
J9265_01980	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
J9265_01985	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
J9265_01990	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
J9265_02000	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
J9265_02015	COG0779	Required for maturation of 30S ribosomal subunits
J9265_02020	COG0195	Participates in both transcription termination and antitermination
J9265_02025	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
J9265_02030	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
J9265_02040	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
J9265_02065	COG0826	peptidase U32
J9265_02070	COG0826	peptidase U32
J9265_02080	COG3154	lipid carrier protein
J9265_02085	COG3153	acetyltransferase
J9265_02110	COG0513	Belongs to the DEAD box helicase family
J9265_02130	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
J9265_02135	COG2204	response regulator
J9265_02145	COG0667	Aldo Keto reductase
J9265_02155	COG0494	nUDIX hydrolase
J9265_02160	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
J9265_02165	COG0730	response to heat
J9265_02170	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
J9265_02180	COG1283	sodium-dependent phosphate transmembrane transporter activity
J9265_02185	COG0583	DNA-binding transcription factor activity
J9265_02190	COG0640	Transcriptional regulator
J9265_02195	COG0268	Binds directly to 16S ribosomal RNA
J9265_02200	COG0728	peptidoglycan biosynthetic process
J9265_02205	COG0196	riboflavin kinase activity
J9265_02220	COG1047	Peptidyl-prolyl cis-trans
J9265_02225	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
J9265_02230	COG1966	Carbon starvation protein
J9265_02245	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
J9265_02250	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
J9265_02260	COG3279	Response regulator of the LytR AlgR family
J9265_02265	COG3275	phosphorelay sensor kinase activity
J9265_02270	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J9265_02275	COG1605	Chorismate mutase
J9265_02275	COG0287	Prephenate dehydrogenase
J9265_02285	COG0488	(ABC) transporter
J9265_02295	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
J9265_02305	COG5001	Diguanylate cyclase
J9265_02310	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
J9265_02315	COG0077	Prephenate dehydratase
J9265_02315	COG1605	Chorismate mutase
J9265_02320	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J9265_02325	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J9265_02330	COG0564	pseudouridine synthase activity
J9265_02340	COG0542	response to heat
J9265_02380	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J9265_02385	COG0826	peptidase U32
J9265_02395	COG0745	RESPONSE REGULATOR receiver
J9265_02400	COG5002	protein histidine kinase activity
J9265_02410	COG0248	Ppx GppA phosphatase
J9265_02415	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
J9265_02425	COG0581	inorganic phosphate transmembrane transporter activity
J9265_02430	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J9265_02445	COG3142	Participates in the control of copper homeostasis
J9265_02450	COG0450	alkyl hydroperoxide reductase
J9265_02455	COG0583	DNA-binding transcription factor activity
J9265_02460	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
J9265_02470	COG0517	IMP dehydrogenase activity
J9265_02485	COG1862	Preprotein translocase
J9265_02490	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J9265_02495	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J9265_02500	COG0483	inositol monophosphate 1-phosphatase activity
J9265_02510	COG1959	2 iron, 2 sulfur cluster binding
J9265_02515	COG1104	cysteine desulfurase activity
J9265_02520	COG0822	iron-sulfur transferase activity
J9265_02530	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
J9265_02535	COG0443	Heat shock 70 kDa protein
J9265_02540	COG0633	Ferredoxin
J9265_02545	COG2975	iron-sulfur cluster assembly
J9265_02550	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J9265_02555	COG0105	UTP biosynthetic process
J9265_02560	COG0820	rRNA (adenine-C2-)-methyltransferase activity
J9265_02570	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
J9265_02575	COG0124	histidyl-tRNA synthetase
J9265_02580	COG2976	Protein conserved in bacteria
J9265_02585	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J9265_02590	COG1160	GTP binding
J9265_02605	COG1570	exodeoxyribonuclease VII activity
J9265_02610	COG0516	GMP reductase activity
J9265_02610	COG0517	IMP dehydrogenase activity
J9265_02615	COG0519	Catalyzes the synthesis of GMP from XMP
J9265_02615	COG0518	GMP synthase (glutamine-hydrolyzing) activity
J9265_02625	COG1584	GPR1 FUN34 yaaH family protein
J9265_02630	COG1535	isochorismatase
J9265_02630	COG3433	isochorismatase activity
J9265_02635	COG1021	2,3-dihydroxybenzoate-AMP ligase
J9265_02640	COG1169	isochorismate synthase
J9265_02645	COG1028	Short-chain dehydrogenase reductase Sdr
J9265_02655	COG4592	Periplasmic binding protein
J9265_02660	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J9265_02665	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J9265_02670	COG1120	ATPase activity
J9265_02680	COG0583	DNA-binding transcription factor activity
J9265_02685	COG2015	COG2015, Alkyl sulfatase and related hydrolases
J9265_02690	COG1115	amino acid carrier protein
J9265_02700	COG0583	DNA-binding transcription factor activity
J9265_02715	COG4565	transcriptional regulatory protein
J9265_02725	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
J9265_02730	COG5016	pyruvate
J9265_02730	COG0511	ligase activity, forming carbon-carbon bonds
J9265_02735	COG3630	sodium ion export across plasma membrane
J9265_02745	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
J9265_02755	COG2301	Belongs to the HpcH HpaI aldolase family
J9265_02760	COG3051	citrate lyase alpha subunit
J9265_02780	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J9265_02785	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
J9265_02790	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
J9265_02845	COG1012	belongs to the aldehyde dehydrogenase family
J9265_02865	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
J9265_02870	COG0840	transmembrane signaling receptor activity
J9265_02875	COG3710	Transcriptional regulator
J9265_02885	COG2165	general secretion pathway protein
J9265_02900	COG4796	Type ii and iii secretion system protein
J9265_02920	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J9265_02925	COG1459	type II secretion system
J9265_02935	COG2207	Transcriptional regulator
J9265_02940	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
J9265_02960	COG0739	heme binding
J9265_02970	COG3064	Membrane
J9265_02975	COG0582	viral genome integration into host DNA
J9265_02985	COG0582	viral genome integration into host DNA
J9265_02995	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
J9265_03000	COG2867	negative regulation of translational initiation
J9265_03005	COG2914	Belongs to the UPF0125 (RnfH) family
J9265_03010	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
J9265_03015	COG0497	DNA recombination
J9265_03020	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
J9265_03025	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
J9265_03035	COG0443	Heat shock 70 kDa protein
J9265_03040	COG0484	heat shock protein binding
J9265_03070	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
J9265_03080	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
J9265_03090	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
J9265_03090	COG0047	phosphoribosylformylglycinamidine synthase activity
J9265_03115	COG0442	prolyl-tRNA aminoacylation
J9265_03120	COG1720	tRNA m6t6A37 methyltransferase activity
J9265_03125	COG0254	rRNA binding
J9265_03130	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J9265_03135	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
J9265_03140	COG1671	Belongs to the UPF0178 family
J9265_03150	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J9265_03165	COG3098	single-species biofilm formation
J9265_03170	COG0564	pseudouridine synthase activity
J9265_03175	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
J9265_03180	COG0142	geranyltranstransferase activity
J9265_03185	COG1722	exodeoxyribonuclease VII activity
J9265_03190	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
J9265_03200	COG0301	tRNA thio-modification
J9265_03200	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J9265_03205	COG0583	DNA-binding transcription factor activity
J9265_03210	COG2363	Small membrane protein
J9265_03215	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J9265_03220	COG1611	Belongs to the LOG family
J9265_03235	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J9265_03235	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
J9265_03245	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
J9265_03250	COG1464	Belongs to the NlpA lipoprotein family
J9265_03255	COG2011	ABC-type metal ion transport system permease component
J9265_03260	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
J9265_03265	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J9265_03270	COG1609	Transcriptional regulator
J9265_03275	COG1263	PTS System
J9265_03275	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J9265_03280	COG0366	Alpha amylase catalytic
J9265_03310	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J9265_03315	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J9265_03320	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
J9265_03325	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
J9265_03330	COG0110	maltose O-acetyltransferase activity
J9265_03350	COG1045	serine acetyltransferase
J9265_03360	COG0438	transferase activity, transferring glycosyl groups
J9265_03370	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
J9265_03400	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J9265_03410	COG1596	polysaccharide export
J9265_03435	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J9265_03445	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
J9265_03450	COG0321	lipoyl(octanoyl) transferase activity
J9265_03455	COG2921	Belongs to the UPF0250 family
J9265_03460	COG1686	Belongs to the peptidase S11 family
J9265_03465	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J9265_03470	COG0772	Belongs to the SEDS family
J9265_03475	COG0768	penicillin binding
J9265_03480	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
J9265_03485	COG0799	negative regulation of ribosome biogenesis
J9265_03490	COG1466	dna polymerase III delta subunit
J9265_03495	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
J9265_03500	COG0495	leucyl-tRNA aminoacylation
J9265_03505	COG2888	peptidyl-tyrosine sulfation
J9265_03510	COG0815	Transfers the fatty acyl group on membrane lipoproteins
J9265_03515	COG4535	Mg2 and Co2 transporter CorC
J9265_03525	COG1702	phosphate starvation-inducible protein PhoH
J9265_03530	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J9265_03535	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J9265_03540	COG2190	(PTS) system
J9265_03550	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J9265_03555	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
J9265_03560	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
J9265_03565	COG3115	cell septum assembly
J9265_03570	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
J9265_03585	COG0789	Transcriptional regulator
J9265_03590	COG1585	Membrane protein implicated in regulation of membrane protease activity
J9265_03595	COG0330	HflC and HflK could
J9265_03600	COG3118	belongs to the thioredoxin family
J9265_03605	COG0300	oxidoreductase activity
J9265_03610	COG1090	epimerase
J9265_03615	COG0622	Phosphoesterase
J9265_03630	COG3710	Transcriptional regulator
J9265_03635	COG0326	Molecular chaperone. Has ATPase activity
J9265_03640	COG0563	adenylate kinase activity
J9265_03645	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
J9265_03660	COG0367	asparagine synthase
J9265_03665	COG4651	solute:proton antiporter activity
J9265_03665	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J9265_03670	COG1940	carbohydrate kinase activity
J9265_03670	COG1846	Transcriptional regulator
J9265_03675	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
J9265_03680	COG1263	PTS System
J9265_03680	COG2190	(PTS) system
J9265_03680	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J9265_03695	COG0101	tRNA pseudouridine synthase activity
J9265_03700	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
J9265_03705	COG0285	dihydrofolate synthase activity
J9265_03710	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
J9265_03715	COG1286	toxin biosynthetic process
J9265_03720	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
J9265_03725	COG2056	Na+-H+ antiporter family
J9265_03730	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
J9265_03745	COG0346	lactoylglutathione lyase activity
J9265_03750	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
J9265_03770	COG4656	Part of a membrane complex involved in electron transport
J9265_03775	COG2878	Part of a membrane complex involved in electron transport
J9265_03780	COG4657	Part of a membrane complex involved in electron transport
J9265_03790	COG0556	nucleotide-excision repair
J9265_03795	COG2204	response regulator
J9265_03800	COG2198	Histidine kinase
J9265_03805	COG0391	Required for morphogenesis under gluconeogenic growth conditions
J9265_03810	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
J9265_03815	COG0521	Mo-molybdopterin cofactor biosynthetic process
J9265_03820	COG0315	cyclic pyranopterin monophosphate synthase activity
J9265_03825	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
J9265_03830	COG0314	molybdopterin synthase activity
J9265_03835	COG2199	diguanylate cyclase activity
J9265_03840	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
J9265_03840	COG0617	tRNA 3'-terminal CCA addition
J9265_03840	COG0517	IMP dehydrogenase activity
J9265_03850	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
J9265_03860	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J9265_03860	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J9265_03865	COG0489	protein tyrosine kinase activity
J9265_03870	COG0572	uridine kinase
J9265_03875	COG2982	Protein involved in outer membrane biogenesis
J9265_03880	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
J9265_03885	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
J9265_03910	COG0183	Belongs to the thiolase family
J9265_03915	COG1250	3-hydroxyacyl-CoA dehydrogenase
J9265_03915	COG1024	Enoyl-CoA hydratase
J9265_03920	COG0778	Nitroreductase
J9265_03925	COG0583	DNA-binding transcription factor activity
J9265_03930	COG0745	RESPONSE REGULATOR receiver
J9265_03935	COG2832	Protein of unknown function (DUF454)
J9265_03940	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
J9265_03950	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
J9265_03955	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
J9265_03965	COG2983	Belongs to the UPF0260 family
J9265_03970	COG1028	Short-chain dehydrogenase reductase Sdr
J9265_03975	COG0616	signal peptide processing
J9265_03985	COG1522	sequence-specific DNA binding
J9265_03990	COG1946	Acyl-CoA thioesterase
J9265_04010	COG3706	GGDEF domain
J9265_04020	COG0640	Transcriptional regulator
J9265_04025	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J9265_04050	COG1881	PFAM PEBP family protein
J9265_04065	COG0009	L-threonylcarbamoyladenylate synthase
J9265_04080	COG2201	protein-glutamate methylesterase activity
J9265_04090	COG5002	protein histidine kinase activity
J9265_04095	COG4191	Histidine kinase
J9265_04100	COG5001	Diguanylate cyclase
J9265_04100	COG3300	MHYT domain
J9265_04105	COG2204	response regulator
J9265_04125	COG0601	transmembrane transport
J9265_04130	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J9265_04135	COG0444	Belongs to the ABC transporter superfamily
J9265_04140	COG4608	Belongs to the ABC transporter superfamily
J9265_04145	COG0435	Glutathione S-transferase
J9265_04150	COG0280	phosphate acetyltransferase
J9265_04150	COG0857	belongs to the CobB CobQ family
J9265_04155	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J9265_04160	COG3092	negative regulation of chromosome organization
J9265_04165	COG4628	conserved protein (DUF2132)
J9265_04175	COG4120	Belongs to the binding-protein-dependent transport system permease family
J9265_04185	COG2199	diguanylate cyclase activity
J9265_04185	COG2203	Gaf domain
J9265_04190	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J9265_04200	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
J9265_04205	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
J9265_04210	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
J9265_04215	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
J9265_04220	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
J9265_04225	COG0156	8-amino-7-oxononanoate synthase activity
J9265_04230	COG2226	methyltransferase
J9265_04235	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
J9265_04245	COG0501	Belongs to the peptidase M48B family
J9265_04255	COG0300	oxidoreductase activity
J9265_04270	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J9265_04280	COG2268	Band 7 protein
J9265_04290	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
J9265_04295	COG2915	High frequency lysogenization protein hflD homolog
J9265_04300	COG0482	sulfurtransferase activity
J9265_04305	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J9265_04310	COG2916	Histone family protein nucleoid-structuring protein H-NS
J9265_04315	COG1757	Na H antiporter
J9265_04320	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
J9265_04325	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
J9265_04330	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
J9265_04335	COG0131	Imidazoleglycerol-phosphate dehydratase
J9265_04335	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
J9265_04340	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
J9265_04345	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
J9265_04350	COG0107	imidazoleglycerol-phosphate synthase activity
J9265_04355	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
J9265_04355	COG0140	phosphoribosyl-ATP diphosphatase activity
J9265_04360	COG1187	pseudouridine synthase activity
J9265_04370	COG1278	Cold shock
J9265_04375	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
J9265_04380	COG0542	response to heat
J9265_04385	COG2985	domain, Protein
J9265_04385	COG3273	potassium ion transport
J9265_04390	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J9265_04395	COG1454	alcohol dehydrogenase
J9265_04395	COG1012	belongs to the aldehyde dehydrogenase family
J9265_04400	COG1737	Transcriptional regulator
J9265_04405	COG0076	glutamate decarboxylase activity
J9265_04415	COG2431	L-lysine efflux transmembrane transporter activity
J9265_04425	COG3070	regulator of competence-specific genes
J9265_04440	COG3852	Histidine kinase
J9265_04450	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
J9265_04465	COG4067	protein conserved in archaea
J9265_04465	COG0189	ligase activity
J9265_04470	COG0500	methyltransferase
J9265_04475	COG4106	trans-aconitate 2-methyltransferase activity
J9265_04480	COG1801	Protein of unknown function DUF72
J9265_04485	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
J9265_04490	COG1435	thymidine kinase activity
J9265_04500	COG0159	tryptophan synthase activity
J9265_04505	COG0133	tryptophan synthase activity
J9265_04510	COG0134	indole-3-glycerol-phosphate synthase activity
J9265_04510	COG0135	phosphoribosylanthranilate isomerase activity
J9265_04515	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
J9265_04520	COG0512	Glutamine amidotransferase of anthranilate synthase
J9265_04525	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J9265_04535	COG0613	PHP domain protein
J9265_04540	COG0009	L-threonylcarbamoyladenylate synthase
J9265_04545	COG1187	pseudouridine synthase activity
J9265_04550	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
J9265_04555	COG4988	ABC transporter
J9265_04560	COG0492	ferredoxin-NADP+ reductase activity
J9265_04570	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J9265_04575	COG3706	GGDEF domain
J9265_04580	COG2949	membrane
J9265_04590	COG0281	malic enzyme
J9265_04600	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
J9265_04620	COG2885	chlorophyll binding
J9265_04635	COG0247	lactate metabolic process
J9265_04635	COG0277	FAD linked oxidase domain protein
J9265_04655	COG2986	histidine ammonia-lyase
J9265_04660	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
J9265_04665	COG0010	Belongs to the arginase family
J9265_04670	COG1228	amidohydrolase
J9265_04685	COG3099	Belongs to the UPF0263 family
J9265_04690	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J9265_04700	COG5001	Diguanylate cyclase
J9265_04705	COG0417	DNA replication proofreading
J9265_04710	COG2197	response regulator
J9265_04715	COG0322	excinuclease ABC activity
J9265_04755	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
J9265_04760	COG0072	phenylalanine-tRNA ligase activity
J9265_04760	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J9265_04765	COG0776	regulation of translation
J9265_04795	COG1346	cytolysis
J9265_04800	COG1380	Effector of murein hydrolase LrgA
J9265_04805	COG2925	Exonuclease
J9265_04810	COG1823	symporter activity
J9265_04815	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J9265_04820	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
J9265_04825	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
J9265_04845	COG4139	cobalamin transport
J9265_04895	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J9265_04900	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
J9265_04905	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J9265_04915	COG1054	Belongs to the UPF0176 family
J9265_04925	COG2814	Major facilitator Superfamily
J9265_04935	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
J9265_04960	COG2989	Protein conserved in bacteria
J9265_04965	COG3108	Peptidase M15
J9265_04970	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J9265_04985	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
J9265_05010	COG1846	Transcriptional regulator
J9265_05015	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
J9265_05020	COG0726	polysaccharide deacetylase
J9265_05025	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
J9265_05035	COG1447	Phosphotransferase system cellobiose-specific component IIA
J9265_05040	COG1486	melibiose metabolic process
J9265_05050	COG1609	Transcriptional regulator
J9265_05055	COG2943	transferase activity, transferring hexosyl groups
J9265_05060	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
J9265_05065	COG0840	transmembrane signaling receptor activity
J9265_05080	COG1448	Aminotransferase
J9265_05090	COG0351	phosphomethylpyrimidine kinase
J9265_05095	COG0017	Asparaginyl-tRNA synthetase
J9265_05105	COG0720	synthase
J9265_05110	COG1760	l-serine dehydratase
J9265_05115	COG0814	amino acid
J9265_05120	COG0494	nUDIX hydrolase
J9265_05125	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
J9265_05140	COG3106	COG3106 Predicted ATPase
J9265_05145	COG3768	UPF0283 membrane protein
J9265_05155	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J9265_05170	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
J9265_05180	COG0471	metal ion transport
J9265_05185	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J9265_05185	COG4191	Histidine kinase
J9265_05195	COG2990	Protein conserved in bacteria
J9265_05200	COG3713	MltA-interacting MipA family protein
J9265_05205	COG2205	protein histidine kinase activity
J9265_05210	COG0745	RESPONSE REGULATOR receiver
J9265_05235	COG1129	ABC transporter
J9265_05275	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
J9265_05280	COG0372	Belongs to the citrate synthase family
J9265_05315	COG2195	Cleaves the N-terminal amino acid of tripeptides
J9265_05325	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
J9265_05335	COG0625	glutathione transferase activity
J9265_05340	COG3437	response regulator, receiver
J9265_05355	COG3706	GGDEF domain
J9265_05360	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J9265_05365	COG1254	Belongs to the acylphosphatase family
J9265_05370	COG2920	part of a sulfur-relay system
J9265_05375	COG0670	Belongs to the BI1 family
J9265_05380	COG1126	abc transporter atp-binding protein
J9265_05385	COG0765	amino acid transport
J9265_05390	COG4597	amino acid ABC transporter
J9265_05395	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J9265_05405	COG0561	phosphatase activity
J9265_05410	COG0602	queuosine metabolic process
J9265_05415	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
J9265_05445	COG3706	GGDEF domain
J9265_05450	COG0443	Heat shock 70 kDa protein
J9265_05455	COG0443	Heat shock 70 kDa protein
J9265_05485	COG1643	Atp-dependent helicase
J9265_05495	COG0443	Heat shock 70 kDa protein
J9265_05500	COG0095	Lipoate-protein ligase
J9265_05510	COG0583	DNA-binding transcription factor activity
J9265_05515	COG0477	Major facilitator Superfamily
J9265_05520	COG0415	Belongs to the DNA photolyase family
J9265_05535	COG0745	RESPONSE REGULATOR receiver
J9265_05545	COG2198	Histidine kinase
J9265_05545	COG0643	Histidine kinase
J9265_05550	COG0643	Histidine kinase
J9265_05550	COG0784	Response regulator, receiver
J9265_05550	COG2198	Histidine kinase
J9265_05555	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J9265_05565	COG2201	protein-glutamate methylesterase activity
J9265_05570	COG0835	chemotaxis
J9265_05575	COG0840	transmembrane signaling receptor activity
J9265_05575	COG3290	protein histidine kinase activity
J9265_05580	COG0840	transmembrane signaling receptor activity
J9265_05590	COG0513	Belongs to the DEAD box helicase family
J9265_05600	COG1538	Outer membrane efflux protein
J9265_05605	COG1566	PFAM secretion protein HlyD family protein
J9265_05610	COG2814	Major facilitator Superfamily
J9265_05620	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
J9265_05630	COG3501	Rhs element vgr protein
J9265_05640	COG3675	Pfam Lipase (class 3)
J9265_05655	COG1280	lysine exporter protein (LysE YggA)
J9265_05660	COG1115	amino acid carrier protein
J9265_05675	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
J9265_05685	COG1177	transmembrane transport
J9265_05695	COG3842	ATPase activity
J9265_05720	COG0589	response to stress
J9265_05725	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
J9265_05740	COG2217	Heavy metal translocating P-type atpase
J9265_05750	COG2010	Cytochrome c
J9265_05765	COG3278	Belongs to the heme-copper respiratory oxidase family
J9265_05780	COG2205	protein histidine kinase activity
J9265_05780	COG0784	Response regulator, receiver
J9265_05805	COG2994	toxin metabolic process
J9265_05810	COG3064	Membrane
J9265_05810	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
J9265_05810	COG1073	alpha beta
J9265_05830	COG1476	TRANSCRIPTIONal
J9265_05845	COG4128	Pfam Zonular occludens toxin
J9265_05875	COG1476	TRANSCRIPTIONal
J9265_05950	COG3120	sequence-specific DNA binding
J9265_05955	COG1067	ATP-dependent peptidase activity
J9265_05960	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J9265_05975	COG0488	(ABC) transporter
J9265_05985	COG0116	Belongs to the methyltransferase superfamily
J9265_05985	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
J9265_05995	COG0167	dihydroorotate dehydrogenase activity
J9265_06010	COG0308	aminopeptidase N
J9265_06045	COG0641	radical SAM
J9265_06125	COG4695	Portal protein
J9265_06205	COG1428	Deoxynucleoside kinase
J9265_06275	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
J9265_06280	COG0308	aminopeptidase N
J9265_06295	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
J9265_06300	COG1956	GAF domain-containing protein
J9265_06305	COG1132	(ABC) transporter
J9265_06310	COG2995	paraquat-inducible protein a
J9265_06315	COG3008	intermembrane lipid transfer
J9265_06325	COG2996	Protein conserved in bacteria
J9265_06340	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J9265_06345	COG1666	GTP binding
J9265_06350	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
J9265_06365	COG0437	4 iron, 4 sulfur cluster binding
J9265_06370	COG3383	formate dehydrogenase (NAD+) activity
J9265_06370	COG0243	molybdopterin cofactor binding
J9265_06400	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
J9265_06405	COG0488	(ABC) transporter
J9265_06410	COG3852	Histidine kinase
J9265_06415	COG2204	response regulator
J9265_06425	COG4662	Binding-protein-dependent transport system inner membrane component
J9265_06430	COG3842	ATPase activity
J9265_06435	COG0746	molybdenum cofactor guanylyltransferase activity
J9265_06460	COG1940	carbohydrate kinase activity
J9265_06465	COG3148	PFAM DTW domain containing protein
J9265_06475	COG0840	transmembrane signaling receptor activity
J9265_06480	COG0791	NLP P60 protein
J9265_06490	COG3001	Fructosamine kinase
J9265_06500	COG0534	Mate efflux family protein
J9265_06510	COG1793	dna ligase
J9265_06520	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
J9265_06525	COG0848	biopolymer transport protein
J9265_06530	COG0811	peptide transport
J9265_06535	COG0811	peptide transport
J9265_06550	COG1175	transmembrane transport
J9265_06555	COG0395	ABC-type sugar transport system, permease component
J9265_06560	COG3842	ATPase activity
J9265_06565	COG1349	DNA-binding transcription factor activity
J9265_06570	COG0584	glycerophosphoryl diester phosphodiesterase
J9265_06575	COG2731	YhcH YjgK YiaL family protein
J9265_06580	COG0251	oxidation-reduction process
J9265_06585	COG1609	Transcriptional regulator
J9265_06590	COG2723	6-phospho-beta-galactosidase activity
J9265_06600	COG0583	DNA-binding transcription factor activity
J9265_06620	COG0577	efflux transmembrane transporter activity
J9265_06620	COG1136	(ABC) transporter
J9265_06625	COG0577	efflux transmembrane transporter activity
J9265_06625	COG1136	(ABC) transporter
J9265_06630	COG4591	ABC-type transport system involved in lipoprotein release permease component
J9265_06630	COG1136	(ABC) transporter
J9265_06635	COG1294	oxidase, subunit
J9265_06640	COG1271	oxidase subunit
J9265_06680	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J9265_06690	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J9265_06710	COG0753	catalase activity
J9265_06725	COG3527	Alpha-acetolactate decarboxylase
J9265_06740	COG2199	diguanylate cyclase activity
J9265_06740	COG2200	EAL domain
J9265_06750	COG2017	converts alpha-aldose to the beta-anomer
J9265_06755	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
J9265_06760	COG1085	galactose-1-phosphate uridylyltransferase
J9265_06805	COG0784	Response regulator, receiver
J9265_06805	COG0835	chemotaxis
J9265_06815	COG4565	transcriptional regulatory protein
J9265_06820	COG3290	protein histidine kinase activity
J9265_06835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J9265_06855	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
J9265_06860	COG3063	Type IV pilus biogenesis stability protein PilW
J9265_06875	COG1451	nucleotide metabolic process
J9265_06885	COG0583	DNA-binding transcription factor activity
J9265_06905	COG1538	Outer membrane efflux protein
J9265_06920	COG1748	Saccharopine dehydrogenase
J9265_06930	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
J9265_06940	COG0577	efflux transmembrane transporter activity
J9265_06945	COG4181	ATPase activity
J9265_06950	COG0534	Mate efflux family protein
J9265_06955	COG0702	epimerase
J9265_06965	COG2814	Major facilitator Superfamily
J9265_06970	COG1187	pseudouridine synthase activity
J9265_06975	COG1061	Type III restriction enzyme res subunit
J9265_06995	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
J9265_07000	COG5001	Diguanylate cyclase
J9265_07000	COG4251	negative regulation of phosphorylation
J9265_07000	COG3706	GGDEF domain
J9265_07000	COG2203	Gaf domain
J9265_07010	COG0840	transmembrane signaling receptor activity
J9265_07040	COG4934	collagen metabolic process
J9265_07055	COG2205	protein histidine kinase activity
J9265_07055	COG0784	Response regulator, receiver
J9265_07060	COG2239	Acts as a magnesium transporter
J9265_07070	COG0814	amino acid
J9265_07075	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J9265_07080	COG1131	(ABC) transporter
J9265_07085	COG0842	Transport permease protein
J9265_07095	COG3313	Fe-S protein
J9265_07105	COG4134	Bacterial extracellular solute-binding protein
J9265_07110	COG4135	transport system, permease component
J9265_07115	COG4136	ATPase activity
J9265_07120	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
J9265_07125	COG0564	pseudouridine synthase activity
J9265_07130	COG0733	neurotransmitter:sodium symporter activity
J9265_07140	COG0626	cystathionine gamma-synthase activity
J9265_07145	COG2818	Glycosylase
J9265_07160	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J9265_07175	COG1842	Phage shock protein A
J9265_07180	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
J9265_07190	COG4168	peptide transport system, permease
J9265_07205	COG4172	Belongs to the ABC transporter superfamily
J9265_07220	COG1227	inorganic diphosphatase activity
J9265_07240	COG0243	molybdopterin cofactor binding
J9265_07245	COG3005	denitrification pathway
J9265_07250	COG4459	periplasmic nitrate reductase
J9265_07260	COG2116	formate transmembrane transporter activity
J9265_07270	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J9265_07275	COG1434	Gram-negative-bacterium-type cell wall biogenesis
J9265_07290	COG1607	acyl-coa hydrolase
J9265_07295	COG2350	Protein conserved in bacteria
J9265_07305	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
J9265_07310	COG0583	DNA-binding transcription factor activity
J9265_07325	COG0612	Peptidase, M16
J9265_07330	COG5001	Diguanylate cyclase
J9265_07335	COG1032	radical SAM domain protein
J9265_07355	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
J9265_07365	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J9265_07370	COG1434	Gram-negative-bacterium-type cell wall biogenesis
J9265_07375	COG0745	RESPONSE REGULATOR receiver
J9265_07380	COG3381	protein complex oligomerization
J9265_07385	COG1609	Transcriptional regulator
J9265_07390	COG3070	regulator of competence-specific genes
J9265_07410	COG0297	glycogen (starch) synthase activity
J9265_07415	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J9265_07420	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J9265_07445	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
J9265_07450	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J9265_07480	COG1012	belongs to the aldehyde dehydrogenase family
J9265_07485	COG1309	transcriptional regulator
J9265_07505	COG0668	transmembrane transport
J9265_07510	COG2995	paraquat-inducible protein a
J9265_07515	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J9265_07515	COG3008	intermembrane lipid transfer
J9265_07525	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J9265_07540	COG0582	viral genome integration into host DNA
J9265_07545	COG0582	viral genome integration into host DNA
J9265_07550	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
J9265_07570	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
J9265_07590	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
J9265_07610	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
J9265_07615	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
J9265_07620	COG1737	Transcriptional regulator
J9265_07625	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
J9265_07630	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J9265_07635	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J9265_07640	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J9265_07650	COG1940	carbohydrate kinase activity
J9265_07655	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
J9265_07660	COG4409	exo-alpha-(2->6)-sialidase activity
J9265_07670	COG2003	Belongs to the UPF0758 family
J9265_07685	COG3941	tape measure
J9265_07725	COG0488	(ABC) transporter
J9265_07805	COG0415	Belongs to the DNA photolyase family
J9265_07815	COG4628	conserved protein (DUF2132)
J9265_07820	COG3284	Transcriptional regulator
J9265_07825	COG1012	belongs to the aldehyde dehydrogenase family
J9265_07835	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J9265_07840	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J9265_07845	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J9265_07855	COG2207	Transcriptional regulator
J9265_07860	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J9265_07860	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J9265_07860	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J9265_07865	COG1482	cell wall glycoprotein biosynthetic process
J9265_07875	COG0784	Response regulator, receiver
J9265_07875	COG5002	protein histidine kinase activity
J9265_07885	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
J9265_07895	COG2885	chlorophyll binding
J9265_07900	COG0823	Involved in the tonB-independent uptake of proteins
J9265_07915	COG0811	peptide transport
J9265_07920	COG0824	Thioesterase
J9265_07925	COG3790	cyd operon protein YbgE
J9265_07930	COG4890	Cyd operon protein YbgT
J9265_07935	COG1294	oxidase, subunit
J9265_07940	COG1271	oxidase subunit
J9265_07950	COG0632	four-way junction helicase activity
J9265_07955	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
J9265_07960	COG0215	cysteine-tRNA ligase activity
J9265_07965	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J9265_07970	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J9265_07975	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J9265_07980	COG3012	SEC-C Motif Domain Protein
J9265_07985	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J9265_07990	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J9265_07995	COG1199	ATP-dependent helicase activity
J9265_08000	COG0730	response to heat
J9265_08005	COG3923	Primosomal replication protein n
J9265_08015	COG0840	transmembrane signaling receptor activity
J9265_08020	COG0708	Exodeoxyribonuclease III
J9265_08025	COG4160	amino acid transport
J9265_08050	COG1882	Formate acetyltransferase
J9265_08060	COG0840	transmembrane signaling receptor activity
J9265_08065	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
J9265_08075	COG3013	Belongs to the UPF0304 family
J9265_08080	COG2766	serine protein kinase
J9265_08085	COG2718	Belongs to the UPF0229 family
J9265_08090	COG2719	SpoVR family
J9265_08095	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
J9265_08100	COG2835	tetraacyldisaccharide 4'-kinase activity
J9265_08105	COG1663	tetraacyldisaccharide 4'-kinase activity
J9265_08110	COG1132	(ABC) transporter
J9265_08115	COG2333	competence protein COMEC
J9265_08115	COG0658	competence protein
J9265_08125	COG4591	ABC-type transport system involved in lipoprotein release permease component
J9265_08130	COG1136	(ABC) transporter
J9265_08135	COG4591	ABC-type transport system involved in lipoprotein release permease component
J9265_08145	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
J9265_08165	COG1252	NADH dehydrogenase
J9265_08170	COG3150	esterase
J9265_08195	COG0537	adenosine 5'-monophosphoramidase activity
J9265_08210	COG2186	Transcriptional regulator
J9265_08215	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
J9265_08220	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
J9265_08225	COG1674	ftsk spoiiie
J9265_08235	COG0686	Belongs to the AlaDH PNT family
J9265_08245	COG0583	DNA-binding transcription factor activity
J9265_08265	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
J9265_08270	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
J9265_08275	COG0776	regulation of translation
J9265_08280	COG0539	negative regulation of cytoplasmic translation
J9265_08285	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
J9265_08290	COG1555	photosystem II stabilization
J9265_08295	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J9265_08300	COG0776	regulation of translation
J9265_08305	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
J9265_08310	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
J9265_08320	COG0544	peptidyl-prolyl cis-trans isomerase activity
J9265_08330	COG4191	Histidine kinase
J9265_08340	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
J9265_08345	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
J9265_08350	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
J9265_08355	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
J9265_08365	COG5001	Diguanylate cyclase
J9265_08365	COG3300	MHYT domain
J9265_08375	COG4589	Belongs to the CDS family
J9265_08410	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
J9265_08420	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J9265_08435	COG0243	molybdopterin cofactor binding
J9265_08440	COG3005	denitrification pathway
J9265_08445	COG3469	chitinase activity
J9265_08445	COG3325	Belongs to the glycosyl hydrolase 18 family
J9265_08450	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J9265_08460	COG2951	lytic endotransglycosylase activity
J9265_08465	COG3100	YcgL domain-containing protein
J9265_08470	COG0850	regulation of cytokinetic process
J9265_08475	COG2894	cell division
J9265_08480	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
J9265_08485	COG3015	lipoprotein NlpE involved in copper resistance
J9265_08505	COG0477	Major facilitator Superfamily
J9265_08520	COG0840	transmembrane signaling receptor activity
J9265_08525	COG1396	sequence-specific DNA binding
J9265_08530	COG3135	benzoate transporter
J9265_08550	COG0596	Alpha beta hydrolase
J9265_08555	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
J9265_08560	COG1169	isochorismate synthase
J9265_08565	COG0436	Aminotransferase
J9265_08570	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
J9265_08575	COG0232	Belongs to the dGTPase family. Type 2 subfamily
J9265_08595	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
J9265_08600	COG0318	PFAM AMP-dependent synthetase and ligase
J9265_08605	COG0596	Alpha beta hydrolase
J9265_08620	COG1214	PFAM Peptidase M22, glycoprotease
J9265_08625	COG1199	ATP-dependent helicase activity
J9265_08635	COG0788	formyltetrahydrofolate deformylase activity
J9265_08640	COG0446	pyridine nucleotide-disulphide oxidoreductase
J9265_08640	COG1902	pentaerythritol trinitrate reductase activity
J9265_08645	COG0616	signal peptide processing
J9265_08650	COG0252	asparaginase activity
J9265_08655	COG3139	Protein of unknown function (DUF1315)
J9265_08665	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J9265_08670	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
J9265_08675	COG0676	glucose-6-phosphate 1-epimerase activity
J9265_08685	COG2226	methyltransferase
J9265_08700	COG0784	Response regulator, receiver
J9265_08700	COG0835	chemotaxis
J9265_08705	COG1940	carbohydrate kinase activity
J9265_08715	COG4667	esterase of the alpha-beta hydrolase superfamily
J9265_08730	COG0733	neurotransmitter:sodium symporter activity
J9265_08740	COG1263	PTS System
J9265_08740	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J9265_08745	COG0084	hydrolase, TatD family'
J9265_08755	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
J9265_08760	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
J9265_08765	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
J9265_08770	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J9265_08775	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
J9265_08780	COG1028	Short-chain dehydrogenase reductase Sdr
J9265_08790	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J9265_08795	COG0416	fatty acid biosynthetic process
J9265_08800	COG0333	Belongs to the bacterial ribosomal protein bL32 family
J9265_08805	COG1399	metal-binding, possibly nucleic acid-binding protein
J9265_08810	COG0424	maF-like protein
J9265_08815	COG0564	pseudouridine synthase activity
J9265_08820	COG1530	ribonuclease E activity
J9265_08825	COG0659	secondary active sulfate transmembrane transporter activity
J9265_08835	COG1012	belongs to the aldehyde dehydrogenase family
J9265_08835	COG1454	alcohol dehydrogenase
J9265_08840	COG2095	MarC family integral membrane protein
J9265_08845	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J9265_08850	COG1757	Na H antiporter
J9265_08860	COG3081	Nucleoid-associated protein
J9265_08865	COG3082	Protein of unknown function (DUF1414)
J9265_08870	COG3083	sulfuric ester hydrolase activity
J9265_08885	COG0123	including yeast histone deacetylase and acetoin utilization protein
J9265_08890	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
J9265_08895	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
J9265_08915	COG2853	Lipoprotein
J9265_08925	COG4235	cytochrome complex assembly
J9265_08925	COG3088	subunit of a heme lyase
J9265_08930	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
J9265_08935	COG1138	Cytochrome C-type biogenesis protein
J9265_08940	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
J9265_08950	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J9265_08955	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
J9265_08960	COG4133	protoheme IX ABC transporter activity
J9265_08970	COG0835	chemotaxis
J9265_08980	COG1192	Involved in chromosome partitioning
J9265_08985	COG2201	protein-glutamate methylesterase activity
J9265_08990	COG2198	Histidine kinase
J9265_08990	COG0784	Response regulator, receiver
J9265_08990	COG0643	Histidine kinase
J9265_08995	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
J9265_09025	COG2062	phosphohistidine phosphatase, SixA
J9265_09030	COG1025	Belongs to the peptidase M16 family
J9265_09040	COG0018	arginyl-trna synthetase
J9265_09060	COG1918	ferrous iron import across plasma membrane
J9265_09065	COG4977	sequence-specific DNA binding
J9265_09070	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
J9265_09075	COG1121	(ABC) transporter
J9265_09080	COG1108	ABC-type Mn2 Zn2 transport systems permease components
J9265_09090	COG0045	succinate-CoA ligase (ADP-forming) activity
J9265_09095	COG0508	dehydrogenase complex catalyzes the overall conversion of
J9265_09100	COG0567	Dehydrogenase, E1 component
J9265_09110	COG1053	succinate dehydrogenase
J9265_09115	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
J9265_09120	COG2009	succinate dehydrogenase
J9265_09125	COG0372	Belongs to the citrate synthase family
J9265_09130	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
J9265_09140	COG0033	Phosphoglucomutase
J9265_09145	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
J9265_09150	COG0596	Alpha beta hydrolase
J9265_09165	COG1346	cytolysis
J9265_09175	COG0583	DNA-binding transcription factor activity
J9265_09185	COG0735	belongs to the Fur family
J9265_09190	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
J9265_09195	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J9265_09200	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
J9265_09210	COG0431	NADPH-dependent FMN reductase
J9265_09220	COG3101	peptidyl-lysine hydroxylation
J9265_09225	COG2860	membrane
J9265_09230	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
J9265_09235	COG2890	protein-(glutamine-N5) methyltransferase activity
J9265_09240	COG2840	Smr protein MutS2
J9265_09250	COG1684	flagellar biosynthetic protein fliR
J9265_09255	COG1987	bacterial-type flagellum assembly
J9265_09280	COG1580	Controls the rotational direction of flagella during chemotaxis
J9265_09305	COG1317	bacterial-type flagellum organization
J9265_09310	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
J9265_09320	COG1677	Flagellar hook-basal body complex protein FliE
J9265_09340	COG1516	flagellar protein fliS
J9265_09350	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
J9265_09355	COG1334	flagellar protein FlaG
J9265_09360	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J9265_09365	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J9265_09370	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J9265_09375	COG2837	iron assimilation
J9265_09395	COG1393	Belongs to the ArsC family
J9265_09405	COG1876	peptidase activity
J9265_09415	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
J9265_09430	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
J9265_09450	COG4783	chaperone-mediated protein folding
J9265_09455	COG1393	Belongs to the ArsC family
J9265_09475	COG2233	PERMEase
J9265_09480	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
J9265_09485	COG0737	Belongs to the 5'-nucleotidase family
J9265_09490	COG2877	3-deoxy-8-phosphooctulonate synthase activity
J9265_09495	COG2912	Transglutaminase-like superfamily
J9265_09505	COG2890	protein-(glutamine-N5) methyltransferase activity
J9265_09510	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
J9265_09515	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
J9265_09520	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
J9265_09525	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
J9265_09530	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
J9265_09535	COG0193	aminoacyl-tRNA hydrolase activity
J9265_09540	COG0012	GTP binding
J9265_09625	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J9265_09630	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
J9265_09645	COG3951	Flagellar rod assembly protein muramidase FlgJ
J9265_09645	COG1705	Flagellar rod assembly protein muramidase FlgJ
J9265_09650	COG1706	bacterial-type flagellum-dependent cell motility
J9265_09655	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
J9265_09665	COG4787	bacterial-type flagellum-dependent cell motility
J9265_09670	COG1749	Flagellar hook protein flgE
J9265_09685	COG1815	bacterial-type flagellum-dependent cell motility
J9265_09690	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J9265_09695	COG0784	Response regulator, receiver
J9265_09695	COG0835	chemotaxis
J9265_09730	COG3433	isochorismatase activity
J9265_09730	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
J9265_09730	COG2226	methyltransferase
J9265_09735	COG2375	cellular response to nickel ion
J9265_09740	COG1629	transport
J9265_09740	COG4774	siderophore transport
J9265_09755	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
J9265_09760	COG2217	Heavy metal translocating P-type atpase
J9265_09760	COG2608	mercury ion transmembrane transporter activity
J9265_09775	COG3735	TraB family
J9265_09790	COG2840	Smr protein MutS2
J9265_09795	COG1187	pseudouridine synthase activity
J9265_09805	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
J9265_09810	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
J9265_09815	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
J9265_09820	COG0121	glutamine amidotransferase
J9265_09825	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
J9265_09830	COG1960	acyl-CoA dehydrogenase activity
J9265_09845	COG0328	RNA-DNA hybrid ribonuclease activity
J9265_09850	COG2226	methyltransferase
J9265_09855	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
J9265_09860	COG1388	LysM domain
J9265_09860	COG0741	lytic transglycosylase activity
J9265_09865	COG3021	interspecies interaction between organisms
J9265_09870	COG0347	Belongs to the P(II) protein family
J9265_09875	COG3479	Phenolic acid decarboxylase
J9265_09885	COG0037	tRNA processing
J9265_09890	COG0825	malonyl-CoA metabolic process
J9265_09895	COG0587	DNA-directed DNA polymerase activity
J9265_09900	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
J9265_09905	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J9265_09910	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J9265_09915	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
J9265_09920	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
J9265_09925	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
J9265_09935	COG0750	zinc metalloprotease
J9265_09940	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
J9265_09945	COG0575	Belongs to the CDS family
J9265_09950	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
J9265_09955	COG0233	cytoplasmic translational termination
J9265_09960	COG0528	UMP kinase activity
J9265_09965	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
J9265_09970	COG0052	Belongs to the universal ribosomal protein uS2 family
J9265_09975	COG0024	Methionine aminopeptidase
J9265_09980	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
J9265_09990	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
J9265_09995	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
J9265_10000	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
J9265_10005	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
J9265_10020	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J9265_10020	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
J9265_10025	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
J9265_10030	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
J9265_10035	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
J9265_10045	COG1073	alpha beta
J9265_10050	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
J9265_10055	COG2252	PERMEase
J9265_10060	COG2195	Cleaves the N-terminal amino acid of tripeptides
J9265_10065	COG0189	ligase activity
J9265_10065	COG4067	protein conserved in archaea
J9265_10070	COG0189	ligase activity
J9265_10080	COG0733	neurotransmitter:sodium symporter activity
J9265_10085	COG3706	GGDEF domain
J9265_10105	COG1477	protein flavinylation
J9265_10110	COG2871	sodium ion transport
J9265_10115	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J9265_10120	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J9265_10125	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J9265_10130	COG1805	sodium ion transport
J9265_10135	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
J9265_10140	COG0271	Belongs to the BolA IbaG family
J9265_10145	COG2813	Specifically methylates the guanine in position
J9265_10155	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
J9265_10160	COG2211	Major facilitator Superfamily
J9265_10170	COG1595	DNA-templated transcription, initiation
J9265_10180	COG3248	Nucleoside-binding outer membrane protein
J9265_10185	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
J9265_10190	COG0693	protein deglycase activity
J9265_10195	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
J9265_10200	COG2166	iron-sulfur cluster assembly
J9265_10205	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
J9265_10210	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
J9265_10220	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
J9265_10220	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J9265_10230	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
J9265_10235	COG1074	ATP-dependent DNA helicase activity
J9265_10240	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
J9265_10255	COG3141	response to X-ray
J9265_10260	COG2171	N-acyltransferase activity
J9265_10270	COG0456	acetyltransferase
J9265_10275	COG0189	ligase activity
J9265_10275	COG0569	domain protein
J9265_10290	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
J9265_10295	COG1609	Transcriptional regulator
J9265_10300	COG3250	beta-galactosidase activity
J9265_10315	COG1022	Amp-dependent synthetase and ligase
J9265_10320	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
J9265_10325	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
J9265_10335	COG0560	Phosphoserine phosphatase
J9265_10345	COG0813	purine-nucleoside phosphorylase activity
J9265_10350	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
J9265_10355	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
J9265_10360	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
J9265_10370	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J9265_10375	COG0084	hydrolase, TatD family'
J9265_10385	COG3022	response to hydroperoxide
J9265_10390	COG1115	amino acid carrier protein
J9265_10405	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
J9265_10410	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
J9265_10415	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
J9265_10420	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
J9265_10445	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J9265_10455	COG0745	RESPONSE REGULATOR receiver
J9265_10460	COG2198	Histidine kinase
J9265_10460	COG0784	Response regulator, receiver
J9265_10460	COG5002	protein histidine kinase activity
J9265_10465	COG5001	Diguanylate cyclase
J9265_10465	COG4251	negative regulation of phosphorylation
J9265_10465	COG3706	GGDEF domain
J9265_10465	COG2203	Gaf domain
J9265_10470	COG1242	4 iron, 4 sulfur cluster binding
J9265_10475	COG0067	glutamate synthase
J9265_10475	COG0069	glutamate synthase activity
J9265_10475	COG0070	glutamate synthase
J9265_10485	COG0067	glutamate synthase
J9265_10485	COG0069	glutamate synthase activity
J9265_10485	COG0070	glutamate synthase
J9265_10490	COG0493	'glutamate synthase
J9265_10500	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
J9265_10510	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
J9265_10515	COG2860	membrane
J9265_10520	COG0583	DNA-binding transcription factor activity
J9265_10525	COG0730	response to heat
J9265_10535	COG4172	Belongs to the ABC transporter superfamily
J9265_10550	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
J9265_10555	COG0505	Belongs to the CarA family
J9265_10565	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
J9265_10570	COG0494	nUDIX hydrolase
J9265_10575	COG0653	protein targeting
J9265_10585	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
J9265_10590	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
J9265_10595	COG0849	cell division
J9265_10600	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
J9265_10605	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J9265_10615	COG0772	Belongs to the SEDS family
J9265_10620	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
J9265_10630	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
J9265_10635	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
J9265_10640	COG0768	penicillin binding
J9265_10645	COG3116	cell division
J9265_10660	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J9265_10665	COG0508	dehydrogenase complex catalyzes the overall conversion of
J9265_10670	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
J9265_10675	COG2186	Transcriptional regulator
J9265_10680	COG0737	Belongs to the 5'-nucleotidase family
J9265_10685	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
J9265_10690	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
J9265_10695	COG4974	Belongs to the 'phage' integrase family
J9265_10700	COG0716	FMN binding
J9265_10720	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J9265_10725	COG1459	type II secretion system
J9265_10735	COG0237	dephospho-CoA kinase activity
J9265_10740	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
J9265_10750	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
J9265_10755	COG0187	DNA topoisomerase II activity
J9265_10760	COG3150	esterase
J9265_10770	COG3151	Protein conserved in bacteria
J9265_10775	COG0494	nUDIX hydrolase
J9265_10780	COG1538	Outer membrane efflux protein
J9265_10790	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
J9265_10795	COG0840	transmembrane signaling receptor activity
J9265_10800	COG3025	triphosphatase activity
J9265_10805	COG1392	Phosphate transport regulator
J9265_10810	COG0306	phosphate transporter
J9265_10815	COG4991	sh3 domain protein
J9265_10825	COG3267	Type II secretory pathway component ExeA
J9265_10825	COG3409	Peptidoglycan-binding domain 1 protein
J9265_10835	COG0148	phosphopyruvate hydratase activity
J9265_10840	COG0504	CTP synthase activity
J9265_10845	COG3956	TIGRFAM MazG family protein
J9265_10850	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J9265_10865	COG5001	Diguanylate cyclase
J9265_10885	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
J9265_10890	COG1381	Involved in DNA repair and RecF pathway recombination
J9265_10895	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
J9265_10910	COG0481	GTPase activity
J9265_10915	COG3086	response to oxidative stress
J9265_10930	COG1595	DNA-templated transcription, initiation
J9265_10935	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
J9265_10945	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
J9265_10960	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J9265_10965	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
J9265_10970	COG3079	Belongs to the UPF0149 family
J9265_10975	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
J9265_10985	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
J9265_10990	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
J9265_10995	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J9265_11000	COG0440	acetolactate synthase activity
J9265_11005	COG0028	Belongs to the TPP enzyme family
J9265_11010	COG1022	Amp-dependent synthetase and ligase
J9265_11015	COG0583	DNA-binding transcription factor activity
J9265_11040	COG0473	3-isopropylmalate dehydrogenase activity
J9265_11045	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
J9265_11050	COG0066	3-isopropylmalate dehydratase activity
J9265_11095	COG3437	response regulator, receiver
J9265_11110	COG0795	lipopolysaccharide-transporting ATPase activity
J9265_11115	COG0795	lipopolysaccharide-transporting ATPase activity
J9265_11120	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
J9265_11125	COG2927	DNA polymerase III (CHI subunit)
J9265_11130	COG0525	valine-tRNA ligase activity
J9265_11135	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J9265_11140	COG0564	pseudouridine synthase activity
J9265_11150	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
J9265_11160	COG0540	Belongs to the ATCase OTCase family
J9265_11170	COG0251	oxidation-reduction process
J9265_11180	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
J9265_11185	COG5007	Belongs to the BolA IbaG family
J9265_11195	COG2854	intermembrane phospholipid transfer
J9265_11200	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
J9265_11205	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
J9265_11210	COG1127	ABC transporter
J9265_11220	COG0517	IMP dehydrogenase activity
J9265_11220	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
J9265_11235	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
J9265_11240	COG1137	ATPase activity
J9265_11250	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
J9265_11255	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
J9265_11260	COG1660	Displays ATPase and GTPase activities
J9265_11265	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J9265_11270	COG2239	Acts as a magnesium transporter
J9265_11275	COG0312	modulator of DNA gyrase
J9265_11280	COG3028	Belongs to the UPF0307 family
J9265_11285	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
J9265_11290	COG1178	ABC-type Fe3 transport system permease component
J9265_11300	COG0163	prenyltransferase activity
J9265_11305	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
J9265_11315	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
J9265_11320	COG2105	PFAM AIG2 family protein
J9265_11330	COG0729	surface antigen
J9265_11335	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J9265_11340	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
J9265_11355	COG1136	(ABC) transporter
J9265_11375	COG0529	Catalyzes the synthesis of activated sulfate
J9265_11390	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
J9265_11390	COG1648	precorrin-2 dehydrogenase activity
J9265_11395	COG0737	Belongs to the 5'-nucleotidase family
J9265_11405	COG0513	Belongs to the DEAD box helicase family
J9265_11410	COG2153	protein acetylation
J9265_11415	COG0697	spore germination
J9265_11420	COG3266	domain, Protein
J9265_11420	COG3061	Opacity-associated protein A
J9265_11425	COG0545	Peptidyl-prolyl cis-trans isomerase
J9265_11435	COG0203	ribosomal protein L17
J9265_11440	COG0202	RNA polymerase activity
J9265_11445	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
J9265_11450	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
J9265_11455	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
J9265_11460	COG0257	Belongs to the bacterial ribosomal protein bL36 family
J9265_11465	COG0201	protein transport
J9265_11475	COG1841	ribosomal large subunit assembly
J9265_11480	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
J9265_11485	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
J9265_11495	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
J9265_11500	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
J9265_11505	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
J9265_11510	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
J9265_11515	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
J9265_11520	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
J9265_11525	COG0255	Belongs to the universal ribosomal protein uL29 family
J9265_11530	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
J9265_11535	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
J9265_11540	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
J9265_11545	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
J9265_11550	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
J9265_11555	COG0089	rRNA binding
J9265_11560	COG0088	Forms part of the polypeptide exit tunnel
J9265_11565	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
J9265_11570	COG0051	transcription antitermination factor activity, RNA binding
J9265_11575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
J9265_11580	COG0557	exoribonuclease II activity
J9265_11585	COG3083	sulfuric ester hydrolase activity
J9265_11590	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
J9265_11605	COG1047	Peptidyl-prolyl cis-trans
J9265_11620	COG2249	NAD(P)H dehydrogenase (quinone) activity
J9265_11625	COG0488	(ABC) transporter
J9265_11635	COG0429	hydrolase of the alpha beta-hydrolase fold
J9265_11645	COG3954	Phosphoribulokinase
J9265_11660	COG1012	belongs to the aldehyde dehydrogenase family
J9265_11670	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
J9265_11680	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
J9265_11695	COG0180	Tryptophanyl-tRNA synthetase
J9265_11700	COG0546	phosphoglycolate phosphatase activity
J9265_11705	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
J9265_11710	COG0338	D12 class N6 adenine-specific DNA methyltransferase
J9265_11720	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
J9265_11725	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
J9265_11755	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
J9265_11765	COG0678	peroxiredoxin activity
J9265_11765	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
J9265_11770	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J9265_11780	COG0165	Argininosuccinate lyase
J9265_11785	COG0137	argininosuccinate synthase activity
J9265_11790	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
J9265_11795	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
J9265_11800	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
J9265_11805	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
J9265_11815	COG1045	serine acetyltransferase
J9265_11820	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
J9265_11825	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
J9265_11830	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J9265_11835	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
J9265_11840	COG1053	succinate dehydrogenase
J9265_11845	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
J9265_11850	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
J9265_11860	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
J9265_11865	COG1509	lysine 2,3-aminomutase activity
J9265_11875	COG0459	protein refolding
J9265_11880	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J9265_11905	COG0149	triose-phosphate isomerase activity
J9265_11910	COG0534	Mate efflux family protein
J9265_11915	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
J9265_11920	COG1575	Belongs to the MenA family. Type 1 subfamily
J9265_11925	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
J9265_11930	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
J9265_11935	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
J9265_11940	COG1609	Transcriptional regulator
J9265_11945	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
J9265_11950	COG0254	rRNA binding
J9265_11955	COG0281	malic enzyme
J9265_11960	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
J9265_11965	COG0626	cystathionine gamma-synthase activity
J9265_11970	COG0460	homoserine dehydrogenase
J9265_11970	COG0527	aspartate kinase activity
J9265_11975	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
J9265_11980	COG3074	FtsZ-dependent cytokinesis
J9265_11985	COG1494	fructose-1,6-bisphosphatase
J9265_11990	COG0205	6-phosphofructokinase activity
J9265_11995	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
J9265_12005	COG0745	RESPONSE REGULATOR receiver
J9265_12010	COG2205	protein histidine kinase activity
J9265_12020	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
J9265_12025	COG3030	protein affecting phage T7 exclusion by the F plasmid
J9265_12030	COG3706	GGDEF domain
J9265_12035	COG1027	Aspartate ammonia-lyase
J9265_12040	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
J9265_12050	COG4232	protein-disulfide reductase activity
J9265_12070	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J9265_12075	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
J9265_12080	COG0194	GDP metabolic process
J9265_12085	COG1758	RNA polymerase activity
J9265_12090	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
J9265_12095	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
J9265_12100	COG2233	PERMEase
J9265_12115	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J9265_12120	COG2183	response to ionizing radiation
J9265_12130	COG0596	Alpha beta hydrolase
J9265_12140	COG1040	competence protein
J9265_12150	COG0494	nUDIX hydrolase
J9265_12155	COG1218	3'(2'),5'-bisphosphate nucleotidase
J9265_12165	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
J9265_12170	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
J9265_12175	COG3156	type II secretion system protein K
J9265_12180	COG4795	General secretion pathway protein
J9265_12185	COG2165	general secretion pathway protein
J9265_12190	COG2165	general secretion pathway protein
J9265_12195	COG2165	general secretion pathway protein
J9265_12200	COG1459	type II secretion system
J9265_12205	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
J9265_12215	COG3031	protein transport across the cell outer membrane
J9265_12220	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
J9265_12225	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
J9265_12230	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
J9265_12240	COG0456	acetyltransferase
J9265_12245	COG1490	D-aminoacyl-tRNA deacylase activity
J9265_12250	COG1295	ribonuclease BN
J9265_12260	COG1217	gtp-binding protein TYPA
J9265_12270	COG0174	glutamine synthetase
J9265_12280	COG3852	Histidine kinase
J9265_12290	COG5001	Diguanylate cyclase
J9265_12290	COG3300	MHYT domain
J9265_12295	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
J9265_12365	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
J9265_12370	COG1404	Belongs to the peptidase S8 family
J9265_12375	COG4206	TonB-dependent receptor
J9265_12380	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J9265_12395	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J9265_12400	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
J9265_12405	COG2177	Part of the ABC transporter FtsEX involved in
J9265_12410	COG2884	Cell division ATP-binding protein ftsE
J9265_12415	COG0552	protein localization to endoplasmic reticulum
J9265_12420	COG0742	ribosomal rna small subunit methyltransferase
J9265_12450	COG0783	Belongs to the Dps family
J9265_12455	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
J9265_12460	COG1280	lysine exporter protein (LysE YggA)
J9265_12465	COG2267	carboxylic ester hydrolase activity
J9265_12470	COG0561	phosphatase activity
J9265_12485	COG2199	diguanylate cyclase activity
J9265_12485	COG2200	EAL domain
J9265_12485	COG3287	FIST C domain
J9265_12490	COG1011	Hydrolase
J9265_12495	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
J9265_12505	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
J9265_12510	COG0019	diaminopimelate decarboxylase activity
J9265_12520	COG1965	Belongs to the frataxin family
J9265_12530	COG0181	hydroxymethylbilane synthase activity
J9265_12535	COG1587	Uroporphyrinogen-III synthase
J9265_12540	COG2959	enzyme of heme biosynthesis
J9265_12545	COG3071	HemY protein
J9265_12560	COG3078	GTPase activator activity
J9265_12580	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J9265_12580	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
J9265_12595	COG0084	hydrolase, TatD family'
J9265_12600	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
J9265_12610	COG0840	transmembrane signaling receptor activity
J9265_12615	COG1580	Controls the rotational direction of flagella during chemotaxis
J9265_12620	COG3161	chorismate lyase activity
J9265_12625	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
J9265_12635	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
J9265_12645	COG0534	Mate efflux family protein
J9265_12650	COG1858	cytochrome C peroxidase
J9265_12655	COG0805	protein transport
J9265_12660	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J9265_12665	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J9265_12680	COG2226	methyltransferase
J9265_12685	COG1322	Protein conserved in bacteria
J9265_12695	COG2081	HI0933 family
J9265_12705	COG1528	Iron-storage protein
J9265_12710	COG0589	response to stress
J9265_12730	COG5001	Diguanylate cyclase
J9265_12730	COG5002	protein histidine kinase activity
J9265_12735	COG1522	sequence-specific DNA binding
J9265_12755	COG0006	proline dipeptidase activity
J9265_12755	COG0006	proline dipeptidase activity
J9265_12760	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
J9265_12765	COG2022	thiamine diphosphate biosynthetic process
J9265_12770	COG2104	thiamine diphosphate biosynthetic process
J9265_12775	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J9265_12785	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
J9265_12790	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
J9265_12840	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
J9265_12855	COG3118	belongs to the thioredoxin family
J9265_12860	COG0513	Belongs to the DEAD box helicase family
J9265_12865	COG0248	Ppx GppA phosphatase
J9265_12870	COG0784	Response regulator, receiver
J9265_12870	COG2205	protein histidine kinase activity
J9265_12875	COG2814	Major facilitator Superfamily
J9265_12890	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J9265_12895	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
J9265_12900	COG0511	ligase activity, forming carbon-carbon bonds
J9265_12905	COG0439	Biotin carboxylase
J9265_12910	COG2264	protein methyltransferase activity
J9265_12915	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
J9265_12920	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
J9265_12925	COG1609	Transcriptional regulator
J9265_12930	COG0129	dihydroxy-acid dehydratase activity
J9265_12935	COG3265	gluconokinase activity
J9265_12945	COG0800	Aldolase
J9265_12965	COG0840	transmembrane signaling receptor activity
J9265_12970	COG1982	Orn Lys Arg decarboxylase major
J9265_12975	COG0531	amino acid
J9265_12980	COG3710	Transcriptional regulator
J9265_12985	COG0789	Transcriptional regulator
J9265_13000	COG0151	Belongs to the GarS family
J9265_13010	COG0776	regulation of translation
J9265_13015	COG1253	flavin adenine dinucleotide binding
J9265_13020	COG1940	carbohydrate kinase activity
J9265_13030	COG3068	Protein conserved in bacteria
J9265_13040	COG1573	uracil-dna glycosylase
J9265_13045	COG0668	transmembrane transport
J9265_13050	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
J9265_13055	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
J9265_13100	COG1012	belongs to the aldehyde dehydrogenase family
J9265_13100	COG1454	alcohol dehydrogenase
J9265_13105	COG0318	PFAM AMP-dependent synthetase and ligase
J9265_13135	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
J9265_13140	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J9265_13145	COG0662	Cupin 2, conserved barrel domain protein
J9265_13145	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
J9265_13150	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
J9265_13185	COG1519	Transferase
J9265_13215	COG3642	lipopolysaccharide core region biosynthetic process
J9265_13220	COG0859	PFAM glycosyl transferase family 9
J9265_13225	COG0463	Glycosyl transferase, family 2
J9265_13230	COG0859	PFAM glycosyl transferase family 9
J9265_13235	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
J9265_13240	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
J9265_13250	COG0267	Belongs to the bacterial ribosomal protein bL33 family
J9265_13255	COG0227	Belongs to the bacterial ribosomal protein bL28 family
J9265_13260	COG2003	Belongs to the UPF0758 family
J9265_13270	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
J9265_13280	COG1309	transcriptional regulator
J9265_13285	COG1560	Kdo2-lipid A biosynthetic process
J9265_13290	COG1560	Kdo2-lipid A biosynthetic process
J9265_13295	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
J9265_13300	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
J9265_13305	COG1561	YicC-like family, N-terminal region
J9265_13310	COG2862	Uncharacterized protein family, UPF0114
J9265_13315	COG1263	PTS System
J9265_13315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J9265_13320	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
J9265_13340	COG1120	ATPase activity
J9265_13345	COG4774	siderophore transport
J9265_13350	COG1132	(ABC) transporter
J9265_13365	COG0514	ATP-dependent DNA helicase (RecQ)
J9265_13370	COG2962	Rard protein
J9265_13385	COG1280	lysine exporter protein (LysE YggA)
J9265_13390	COG0210	DNA helicase
J9265_13400	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
J9265_13405	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
J9265_13455	COG3621	Patatin-like phospholipase
J9265_13480	COG2131	deaminase
J9265_13490	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J9265_13495	COG0601	transmembrane transport
J9265_13500	COG0747	negative chemotaxis
J9265_13550	COG1309	transcriptional regulator
J9265_13555	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
J9265_13560	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
J9265_13565	COG2960	long-chain fatty acid transporting porin activity
J9265_13570	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
J9265_13575	COG0583	DNA-binding transcription factor activity
J9265_13620	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
J9265_13625	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
J9265_13630	COG1739	Uncharacterized protein family UPF0029
J9265_13640	COG0183	Belongs to the thiolase family
J9265_13645	COG0583	DNA-binding transcription factor activity
J9265_13650	COG2814	Major facilitator Superfamily
J9265_13655	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J9265_13660	COG0355	proton-transporting ATP synthase activity, rotational mechanism
J9265_13665	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
J9265_13670	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
J9265_13675	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
J9265_13680	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
J9265_13685	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
J9265_13695	COG0356	it plays a direct role in the translocation of protons across the membrane
J9265_13700	COG3312	ion transport
J9265_13705	COG1475	DNA binding
J9265_13710	COG1192	Involved in chromosome partitioning
J9265_13720	COG0445	tRNA wobble uridine modification
J9265_13725	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
J9265_13730	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
J9265_13735	COG0706	membrane insertase activity
J9265_13745	COG0594	ribonuclease P activity
J9265_13750	COG0230	Belongs to the bacterial ribosomal protein bL34 family
J9265_13755	COG1126	abc transporter atp-binding protein
J9265_13800	COG0217	transcriptional regulatory protein
J9265_13805	COG2084	Dehydrogenase
J9265_13820	COG2909	trisaccharide binding
J9265_13825	COG0058	SHG alpha-glucan phosphorylase activity
J9265_13830	COG1640	4-alpha-glucanotransferase
J9265_13835	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
J9265_13845	COG3501	Rhs element vgr protein
J9265_13850	COG4104	PAAR repeat-containing protein
J9265_13880	COG0471	metal ion transport
J9265_13885	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
J9265_13925	COG0671	phosphoesterase, PA-phosphatase related
J9265_13930	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
J9265_13940	COG1999	signal sequence binding
J9265_13955	COG0786	glutamate:sodium symporter activity
J9265_13975	COG1566	PFAM secretion protein HlyD family protein
J9265_14000	COG0813	purine-nucleoside phosphorylase activity
J9265_14005	COG3272	Protein of unknown function (DUF1722)
J9265_14015	COG0415	Belongs to the DNA photolyase family
J9265_14020	COG1376	ErfK ybiS ycfS ynhG family protein
J9265_14020	COG1388	LysM domain
J9265_14030	COG0513	Belongs to the DEAD box helicase family
J9265_14035	COG1770	oligopeptidase
J9265_14065	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
J9265_14070	COG0573	inorganic phosphate transmembrane transporter activity
J9265_14075	COG0581	inorganic phosphate transmembrane transporter activity
J9265_14080	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
J9265_14095	COG3314	Sporulation integral membrane protein YlbJ
J9265_14100	COG0659	secondary active sulfate transmembrane transporter activity
J9265_14110	COG0739	heme binding
J9265_14115	COG3300	MHYT domain
J9265_14115	COG5001	Diguanylate cyclase
J9265_14120	COG0583	DNA-binding transcription factor activity
J9265_14125	COG2814	Major facilitator Superfamily
J9265_14145	COG1301	dicarboxylic acid transport
J9265_14155	COG1342	Belongs to the UPF0251 family
J9265_14185	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
J9265_14190	COG0673	inositol 2-dehydrogenase activity
J9265_14200	COG2200	EAL domain
J9265_14200	COG2771	luxR family
J9265_14205	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J9265_14215	COG0564	pseudouridine synthase activity
J9265_14280	COG3829	transcription factor binding
J9265_14305	COG3409	Peptidoglycan-binding domain 1 protein
J9265_14305	COG3501	Rhs element vgr protein
J9265_14320	COG1869	D-ribose catabolic process
J9265_14325	COG1129	ABC transporter
J9265_14330	COG1172	Belongs to the binding-protein-dependent transport system permease family
J9265_14335	COG1879	ABC-type sugar transport system periplasmic component
J9265_14340	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J9265_14345	COG1609	Transcriptional regulator
J9265_14355	COG3201	nicotinamide mononucleotide transporter
J9265_14360	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
J9265_14370	COG0584	glycerophosphoryl diester phosphodiesterase
J9265_14375	COG2271	Major facilitator Superfamily
J9265_14410	COG0579	oxidoreductase
J9265_14420	COG0242	peptide deformylase activity
J9265_14430	COG1320	monovalent cation:proton antiporter activity
J9265_14435	COG2212	antiporter activity
J9265_14440	COG1863	multisubunit Na H antiporter MnhE subunit
J9265_14445	COG0651	ATP synthesis coupled electron transport
J9265_14450	COG1006	Multisubunit Na H antiporter MnhC subunit
J9265_14455	COG2111	Na H antiporter
J9265_14455	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
J9265_14465	COG0589	response to stress
J9265_14470	COG0814	amino acid
J9265_14485	COG3530	Putative quorum-sensing-regulated virulence factor
J9265_14495	COG5001	Diguanylate cyclase
J9265_14495	COG5002	protein histidine kinase activity
J9265_14500	COG1278	Cold shock
J9265_14515	COG2304	oxidoreductase activity
J9265_14535	COG0714	Associated with various cellular activities
J9265_14540	COG0840	transmembrane signaling receptor activity
J9265_14555	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
J9265_14560	COG2195	Cleaves the N-terminal amino acid of tripeptides
J9265_14570	COG3604	Transcriptional regulator
J9265_14575	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
J9265_14575	COG1017	nitric oxide dioxygenase activity
J9265_14580	COG1278	Cold shock
J9265_14585	COG3036	rescue of stalled ribosome
J9265_14610	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
J9265_14610	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
J9265_14615	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
J9265_14625	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
J9265_14635	COG0516	GMP reductase activity
J9265_14670	COG0513	Belongs to the DEAD box helicase family
J9265_14675	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
J9265_14680	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
J9265_14685	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
J9265_14690	COG0784	Response regulator, receiver
J9265_14690	COG3437	response regulator, receiver
J9265_14695	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J9265_14695	COG4191	Histidine kinase
J9265_14705	COG1757	Na H antiporter
J9265_14710	COG2814	Major facilitator Superfamily
J9265_14720	COG3706	GGDEF domain
J9265_14725	COG3240	lipase activity
J9265_14735	COG0840	transmembrane signaling receptor activity
J9265_14740	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
J9265_14745	COG5380	lipid catabolic process
J9265_14770	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J9265_14775	COG4605	iron ion homeostasis
J9265_14780	COG4604	ABC transporter, ATP-binding protein
J9265_14785	COG2207	Transcriptional regulator
J9265_14800	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
J9265_14820	COG0745	RESPONSE REGULATOR receiver
J9265_14830	COG3623	hexulose-6-phosphate isomerase
J9265_14835	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
J9265_14840	COG0561	phosphatase activity
J9265_14870	COG3038	cytochrome b561
J9265_14875	COG0366	Alpha amylase catalytic
J9265_14900	COG0745	RESPONSE REGULATOR receiver
J9265_14905	COG5002	protein histidine kinase activity
J9265_14930	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
J9265_14945	COG2814	Major facilitator Superfamily
J9265_14960	COG1686	Belongs to the peptidase S11 family
J9265_14985	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J9265_14985	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
J9265_14990	COG0509	glycine decarboxylation via glycine cleavage system
J9265_14995	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
J9265_15005	COG0404	The glycine cleavage system catalyzes the degradation of glycine
J9265_15015	COG3039	Transposase
J9265_15050	COG0291	Belongs to the bacterial ribosomal protein bL35 family
J9265_15055	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
J9265_15105	COG1028	Short-chain dehydrogenase reductase Sdr
J9265_15140	COG0232	Belongs to the dGTPase family. Type 2 subfamily
J9265_15165	COG0494	nUDIX hydrolase
J9265_15180	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J9265_15185	COG3040	lipid binding
J9265_15215	COG3041	Addiction module toxin RelE StbE family
J9265_15310	COG1619	proteins homologs of microcin C7 resistance protein MccF
J9265_15360	COG0346	lactoylglutathione lyase activity
J9265_15375	COG3040	lipid binding
J9265_15390	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
J9265_15400	COG1280	lysine exporter protein (LysE YggA)
J9265_15585	COG3549	Plasmid maintenance system killer
J9265_15590	COG3093	addiction module antidote protein HigA
J9265_15610	COG0384	phenazine biosynthesis protein PhzF
J9265_15640	COG0346	lactoylglutathione lyase activity
J9265_15660	COG3040	lipid binding
J9265_15715	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J9265_15810	COG1619	proteins homologs of microcin C7 resistance protein MccF
J9265_15835	COG3040	lipid binding
J9265_15890	COG4977	sequence-specific DNA binding
J9265_15970	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
J9265_15975	COG2944	sequence-specific DNA binding
J9265_15990	COG3039	Transposase
J9265_16015	COG0346	lactoylglutathione lyase activity
J9265_16160	COG0346	lactoylglutathione lyase activity
J9265_16175	COG1328	CTP reductase activity
J9265_16180	COG0602	queuosine metabolic process
J9265_16190	COG4067	protein conserved in archaea
J9265_16190	COG0189	ligase activity
J9265_16195	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J9265_16195	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
J9265_16195	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
J9265_16200	COG1105	Belongs to the carbohydrate kinase PfkB family
J9265_16205	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J9265_16205	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
J9265_16210	COG1609	Transcriptional regulator
J9265_16215	COG0420	3'-5' exonuclease activity
J9265_16220	COG0419	ATPase involved in DNA repair
J9265_16225	COG2205	protein histidine kinase activity
J9265_16225	COG0784	Response regulator, receiver
J9265_16230	COG0156	8-amino-7-oxononanoate synthase activity
J9265_16245	COG0523	cobalamin synthesis protein
J9265_16260	COG0674	pyruvate-flavodoxin oxidoreductase activity
J9265_16260	COG1013	pyruvate-flavodoxin oxidoreductase activity
J9265_16260	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
J9265_16260	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
J9265_16265	COG2205	protein histidine kinase activity
J9265_16270	COG0745	RESPONSE REGULATOR receiver
J9265_16275	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
J9265_16280	COG0586	Pfam SNARE associated Golgi protein
J9265_16290	COG2200	EAL domain
J9265_16300	COG3038	cytochrome b561
J9265_16310	COG2116	formate transmembrane transporter activity
J9265_16315	COG0583	DNA-binding transcription factor activity
J9265_16325	COG3593	DNA synthesis involved in DNA repair
J9265_16330	COG0737	Belongs to the 5'-nucleotidase family
J9265_16345	COG2824	Alkylphosphonate utilization operon protein PhnA
J9265_16375	COG2199	diguanylate cyclase activity
J9265_16395	COG3706	GGDEF domain
J9265_16410	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
J9265_16415	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
J9265_16425	COG0745	RESPONSE REGULATOR receiver
J9265_16440	COG3140	Belongs to the UPF0181 family
J9265_16445	COG0023	Translation Initiation Factor
J9265_16465	COG0045	succinate-CoA ligase (ADP-forming) activity
J9265_16465	COG1042	CoA-binding domain protein
J9265_16465	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J9265_16470	COG0583	DNA-binding transcription factor activity
J9265_16475	COG1629	transport
J9265_16475	COG4771	TonB-dependent receptor
J9265_16490	COG2050	protein possibly involved in aromatic compounds catabolism
J9265_16510	COG0625	glutathione transferase activity
J9265_16525	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
J9265_16530	COG4172	Belongs to the ABC transporter superfamily
J9265_16535	COG4239	(ABC) transporter, permease
J9265_16540	COG4174	ABC transporter (Permease)
J9265_16545	COG4166	transmembrane transport
J9265_16570	COG3104	oligopeptide transport
J9265_16590	COG3842	ATPase activity
J9265_16600	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
J9265_16605	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J9265_16610	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J9265_16615	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
J9265_16620	COG1011	Hydrolase
J9265_16630	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
J9265_16635	COG1970	mechanosensitive ion channel activity
J9265_16640	COG2759	Belongs to the formate--tetrahydrofolate ligase family
J9265_16645	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J9265_16645	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
J9265_16650	COG0302	gtp cyclohydrolase
J9265_16660	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
J9265_16670	COG2897	thiosulfate sulfurtransferase activity
J9265_16675	COG2390	Transcriptional regulator
J9265_16685	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
J9265_16710	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
J9265_16735	COG0583	DNA-binding transcription factor activity
J9265_16740	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
J9265_16780	COG0446	pyridine nucleotide-disulphide oxidoreductase
J9265_16825	COG1263	PTS System
J9265_16825	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
J9265_16830	COG1609	Transcriptional regulator
J9265_16835	COG1621	beta-fructofuranosidase activity
J9265_16840	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J9265_16845	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J9265_16855	COG2885	chlorophyll binding
J9265_16860	COG0545	Peptidyl-prolyl cis-trans isomerase
J9265_16865	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
J9265_16870	COG0840	transmembrane signaling receptor activity
J9265_16875	COG3069	C4-dicarboxylate transmembrane transporter activity
J9265_16880	COG1760	l-serine dehydratase
J9265_16900	COG1609	Transcriptional regulator
J9265_16905	COG2197	response regulator
J9265_16910	COG3850	Histidine kinase
J9265_16915	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
J9265_16925	COG0243	molybdopterin cofactor binding
J9265_16945	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J9265_16950	COG2197	response regulator
J9265_16955	COG3851	Histidine kinase
J9265_16960	COG2271	Major facilitator Superfamily
J9265_16965	COG1840	ABC-type Fe3 transport system, periplasmic component
J9265_16975	COG3842	ATPase activity
J9265_16980	COG3243	poly(R)-hydroxyalkanoic acid synthase
J9265_16990	COG0183	Belongs to the thiolase family
J9265_17000	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J9265_17005	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
J9265_17025	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
J9265_17035	COG1979	alcohol dehydrogenase
J9265_17050	COG4191	Histidine kinase
J9265_17060	COG2271	Major facilitator Superfamily
J9265_17065	COG0469	pyruvate kinase activity
J9265_17070	COG2205	protein histidine kinase activity
J9265_17070	COG2198	Histidine kinase
J9265_17070	COG0784	Response regulator, receiver
J9265_17075	COG1879	ABC-type sugar transport system periplasmic component
J9265_17080	COG1803	Methylglyoxal synthase
J9265_17085	COG1335	isochorismatase
J9265_17090	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
J9265_17105	COG0210	DNA helicase
J9265_17110	COG1289	transmembrane transporter activity
J9265_17140	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
J9265_17145	COG4149	molybdate abc transporter
J9265_17150	COG0725	ABC transporter, periplasmic molybdate-binding protein
J9265_17155	COG1492	cobalamin metabolic process
J9265_17195	COG5002	protein histidine kinase activity
J9265_17195	COG0784	Response regulator, receiver
J9265_17200	COG1879	ABC-type sugar transport system periplasmic component
J9265_17210	COG2827	Endonuclease containing a URI domain
J9265_17225	COG2926	Belongs to the UPF0265 family
J9265_17240	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
J9265_17245	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
J9265_17250	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
J9265_17255	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
J9265_17260	COG0247	lactate metabolic process
J9265_17265	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
J9265_17270	COG3118	belongs to the thioredoxin family
J9265_17300	COG0583	DNA-binding transcription factor activity
J9265_17305	COG4160	amino acid transport
J9265_17310	COG4215	(ABC) transporter
J9265_17315	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J9265_17320	COG1126	abc transporter atp-binding protein
J9265_17330	COG2425	protein containing a von Willebrand factor type A (vWA) domain
J9265_17340	COG0494	nUDIX hydrolase
J9265_17345	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
J9265_17355	COG1309	transcriptional regulator
J9265_17360	COG0513	Belongs to the DEAD box helicase family
J9265_17365	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
J9265_17370	COG0814	amino acid
J9265_17375	COG0840	transmembrane signaling receptor activity
J9265_17380	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
J9265_17385	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
J9265_17395	COG1984	allophanate hydrolase subunit 2
J9265_17410	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
J9265_17415	COG4181	ATPase activity
J9265_17425	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
J9265_17430	COG1716	ATPase activity
J9265_17430	COG5001	Diguanylate cyclase
J9265_17440	COG0484	heat shock protein binding
J9265_17480	COG0546	phosphoglycolate phosphatase activity
J9265_17495	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
J9265_17500	COG1368	sulfuric ester hydrolase activity
J9265_17510	COG0513	Belongs to the DEAD box helicase family
J9265_17525	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
J9265_17535	COG3046	protein related to deoxyribodipyrimidine photolyase
J9265_17540	COG3397	chitin binding
J9265_17545	COG3227	Zinc metalloprotease (Elastase)
J9265_17555	COG0010	Belongs to the arginase family
J9265_17560	COG1166	arginine decarboxylase activity
J9265_17570	COG2239	Acts as a magnesium transporter
J9265_17575	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
J9265_17580	COG0459	protein refolding
J9265_17590	COG0527	aspartate kinase activity
J9265_17595	COG0662	Cupin 2, conserved barrel domain protein
J9265_17600	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
J9265_17605	COG0456	acetyltransferase
J9265_17615	COG3186	Phenylalanine-4-hydroxylase
J9265_17620	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
J9265_17635	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
J9265_17660	COG1253	flavin adenine dinucleotide binding
J9265_17665	COG1765	OsmC-like protein
J9265_17690	COG0531	amino acid
J9265_17705	COG3279	Response regulator of the LytR AlgR family
J9265_17710	COG3275	phosphorelay sensor kinase activity
J9265_17725	COG1136	(ABC) transporter
J9265_17725	COG0577	efflux transmembrane transporter activity
J9265_17730	COG1136	(ABC) transporter
J9265_17740	COG4989	oxidoreductase activity
J9265_17745	COG0366	Alpha amylase catalytic
J9265_17755	COG2067	long-chain fatty acid transport protein
J9265_17760	COG2267	carboxylic ester hydrolase activity
J9265_17770	COG3227	Zinc metalloprotease (Elastase)
J9265_17780	COG3047	cAMP biosynthetic process
J9265_17790	COG1686	Belongs to the peptidase S11 family
J9265_17795	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
J9265_17800	COG1271	oxidase subunit
J9265_17805	COG1294	oxidase, subunit
J9265_17820	COG3048	D-serine ammonia-lyase activity
J9265_17825	COG0583	DNA-binding transcription factor activity
J9265_17870	COG1063	alcohol dehydrogenase
J9265_17895	COG0346	lactoylglutathione lyase activity
J9265_17915	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
J9265_17920	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J9265_17925	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
J9265_17930	COG0363	glucosamine-6-phosphate deaminase activity
J9265_17935	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
J9265_17960	COG1929	Belongs to the glycerate kinase type-1 family
J9265_17965	COG2610	gluconate transmembrane transporter activity
J9265_17970	COG3835	regulator
J9265_17980	COG0748	coenzyme F420 binding
J9265_17985	COG3721	Heme iron utilization protein
J9265_17995	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
J9265_18000	COG0811	peptide transport
J9265_18005	COG0848	biopolymer transport protein
J9265_18010	COG4558	Periplasmic binding protein
J9265_18015	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
J9265_18020	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
J9265_18055	COG3217	Mosc domain protein beta barrel domain protein
J9265_18055	COG0633	Ferredoxin
J9265_18055	COG3217	Mosc domain protein beta barrel domain protein
J9265_18055	COG0633	Ferredoxin
J9265_18060	COG0418	dihydroorotase activity
J9265_18070	COG3152	Membrane
J9265_18080	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
J9265_18085	COG2354	Protein conserved in bacteria
J9265_18090	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
J9265_18095	COG1278	Cold shock
J9265_18120	COG2199	diguanylate cyclase activity
J9265_18125	COG1349	DNA-binding transcription factor activity
J9265_18140	COG3833	ABC-type maltose transport systems, permease component
J9265_18145	COG1175	transmembrane transport
J9265_18155	COG3842	ATPase activity
J9265_18160	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
J9265_18175	COG0393	Putative heavy-metal-binding
J9265_18185	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
J9265_18190	COG0835	chemotaxis
J9265_18190	COG0784	Response regulator, receiver
J9265_18195	COG1846	Transcriptional regulator
J9265_18200	COG3706	GGDEF domain
J9265_18235	COG0583	DNA-binding transcription factor activity
J9265_18240	COG5001	Diguanylate cyclase
J9265_18250	COG1741	Belongs to the pirin family
J9265_18255	COG3123	guanosine phosphorylase activity
J9265_18265	COG2211	Major facilitator Superfamily
J9265_18270	COG0840	transmembrane signaling receptor activity
J9265_18275	COG1067	ATP-dependent peptidase activity
J9265_18285	COG4172	Belongs to the ABC transporter superfamily
J9265_18310	COG0583	DNA-binding transcription factor activity
J9265_18320	COG1620	l-lactate permease
J9265_18335	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
J9265_18345	COG0840	transmembrane signaling receptor activity
J9265_18355	COG0513	Belongs to the DEAD box helicase family
J9265_18360	COG0583	DNA-binding transcription factor activity
J9265_18370	COG1902	pentaerythritol trinitrate reductase activity
J9265_18380	COG1132	(ABC) transporter
J9265_18390	COG1902	pentaerythritol trinitrate reductase activity
J9265_18400	COG1280	lysine exporter protein (LysE YggA)
J9265_18405	COG2207	Transcriptional regulator
J9265_18425	COG1846	Transcriptional regulator
J9265_18430	COG1764	response to oxidative stress
J9265_18435	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
J9265_18440	COG0697	spore germination
J9265_18450	COG0700	Nucleoside recognition
J9265_18455	COG3366	ferrous iron transmembrane transporter activity
J9265_18460	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
J9265_18470	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
J9265_18475	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
J9265_18480	COG2259	Doxx family
J9265_18505	COG0363	glucosamine-6-phosphate deaminase activity
J9265_18520	COG4580	involved in the transport of maltose and maltodextrins
J9265_18535	COG0840	transmembrane signaling receptor activity
J9265_18550	COG0840	transmembrane signaling receptor activity
J9265_18560	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
J9265_18565	COG1126	abc transporter atp-binding protein
J9265_18575	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
J9265_18580	COG4597	amino acid ABC transporter
J9265_18585	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
J9265_18595	COG0739	heme binding
J9265_18600	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
J9265_18600	COG2213	PTS system mannitol-specific
J9265_18605	COG0246	Mannitol dehydrogenase
J9265_18610	COG3722	fumarate hydratase activity
J9265_18615	COG0673	inositol 2-dehydrogenase activity
J9265_18645	COG2910	NAD(P)H-binding
J9265_18655	COG0840	transmembrane signaling receptor activity
J9265_18660	COG4221	oxidoreductase activity
J9265_18670	COG1901	pseudouridine methyltransferase
J9265_18685	COG0531	amino acid
J9265_18690	COG1982	Orn Lys Arg decarboxylase major
J9265_18720	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
J9265_18745	COG1262	PFAM Formylglycine-generating sulfatase enzyme
J9265_18785	COG0745	RESPONSE REGULATOR receiver
J9265_18810	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
J9265_18815	COG0840	transmembrane signaling receptor activity
J9265_18820	COG0835	chemotaxis
J9265_18825	COG0835	chemotaxis
J9265_18830	COG0643	Histidine kinase
J9265_18830	COG2198	Histidine kinase
J9265_18850	COG0601	transmembrane transport
J9265_18855	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
J9265_18865	COG2194	sulfuric ester hydrolase activity
J9265_18870	COG0642	Histidine kinase
J9265_18905	COG1444	tRNA N-acetyltransferase activity
J9265_18910	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine