locus-tag class description VCA1552_00001 PF00308 Bacterial dnaA protein VCA1552_00001 PF08299 Bacterial dnaA protein helix-turn-helix VCA1552_00001 PF11638 DnaA N-terminal domain VCA1552_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain VCA1552_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain VCA1552_00002 PF02767 DNA polymerase III beta subunit, central domain VCA1552_00003 PF02463 RecF/RecN/SMC N terminal domain VCA1552_00004 PF01751 Toprim domain VCA1552_00004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00004 PF18053 DNA gyrase B subunit insert domain VCA1552_00004 PF00204 DNA gyrase B VCA1552_00004 PF00986 DNA gyrase B subunit, carboxyl terminus VCA1552_00007 PF00011 Hsp20/alpha crystallin family VCA1552_00008 PF00155 Aminotransferase class I and II VCA1552_00009 PF05746 DALR anticodon binding domain VCA1552_00009 PF02092 Glycyl-tRNA synthetase beta subunit VCA1552_00010 PF02091 Glycyl-tRNA synthetase alpha subunit VCA1552_00012 PF01169 Uncharacterized protein family UPF0016 VCA1552_00014 PF01206 Sulfurtransferase TusA VCA1552_00016 PF00107 Zinc-binding dehydrogenase VCA1552_00016 PF08240 Alcohol dehydrogenase GroES-like domain VCA1552_00017 PF00585 C-terminal regulatory domain of Threonine dehydratase VCA1552_00017 PF00291 Pyridoxal-phosphate dependent enzyme VCA1552_00018 PF00920 Dehydratase family VCA1552_00019 PF01063 Amino-transferase class IV VCA1552_00021 PF00205 Thiamine pyrophosphate enzyme, central domain VCA1552_00021 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCA1552_00021 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCA1552_00022 PF13335 Magnesium chelatase, subunit ChlI C-terminal VCA1552_00022 PF01078 Magnesium chelatase, subunit ChlI VCA1552_00023 PF01553 Acyltransferase VCA1552_00024 PF01323 DSBA-like thioredoxin domain VCA1552_00025 PF01636 Phosphotransferase enzyme family VCA1552_00026 PF13746 4Fe-4S dicluster domain VCA1552_00026 PF12801 4Fe-4S binding domain VCA1552_00026 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VCA1552_00027 PF06288 Protein of unknown function (DUF1040) VCA1552_00028 PF07070 SpoOM protein VCA1552_00029 PF03006 Haemolysin-III related VCA1552_00031 PF02386 Cation transport protein VCA1552_00032 PF02080 TrkA-C domain VCA1552_00032 PF02254 TrkA-N domain VCA1552_00033 PF01029 NusB family VCA1552_00033 PF01189 16S rRNA methyltransferase RsmB/F VCA1552_00034 PF02911 Formyl transferase, C-terminal domain VCA1552_00034 PF00551 Formyl transferase VCA1552_00035 PF01327 Polypeptide deformylase VCA1552_00036 PF01476 LysM domain VCA1552_00037 PF02481 DNA recombination-mediator protein A VCA1552_00037 PF17782 DprA winged helix domain VCA1552_00038 PF04361 Protein of unknown function (DUF494) VCA1552_00039 PF01396 Topoisomerase DNA binding C4 zinc finger VCA1552_00040 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VCA1552_00040 PF02222 ATP-grasp domain VCA1552_00041 PF00731 AIR carboxylase VCA1552_00042 PF01300 Telomere recombination VCA1552_00043 PF01218 Coproporphyrinogen III oxidase VCA1552_00044 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VCA1552_00044 PF01488 Shikimate / quinate 5-dehydrogenase VCA1552_00044 PF08501 Shikimate dehydrogenase substrate binding domain VCA1552_00046 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_00052 PF13091 PLD-like domain VCA1552_00054 PF01565 FAD binding domain VCA1552_00054 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VCA1552_00055 PF03099 Biotin/lipoate A/B protein ligase family VCA1552_00055 PF02237 Biotin protein ligase C terminal domain VCA1552_00055 PF08279 HTH domain VCA1552_00056 PF00485 Phosphoribulokinase / Uridine kinase family VCA1552_00061 PF03144 Elongation factor Tu domain 2 VCA1552_00061 PF00009 Elongation factor Tu GTP binding domain VCA1552_00061 PF03143 Elongation factor Tu C-terminal domain VCA1552_00062 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VCA1552_00063 PF02357 Transcription termination factor nusG VCA1552_00063 PF00467 KOW motif VCA1552_00064 PF00298 Ribosomal protein L11, RNA binding domain VCA1552_00064 PF03946 Ribosomal protein L11, N-terminal domain VCA1552_00065 PF00687 Ribosomal protein L1p/L10e family VCA1552_00066 PF00466 Ribosomal protein L10 VCA1552_00067 PF16320 Ribosomal protein L7/L12 dimerisation domain VCA1552_00067 PF00542 Ribosomal protein L7/L12 C-terminal domain VCA1552_00068 PF10385 RNA polymerase beta subunit external 1 domain VCA1552_00068 PF04560 RNA polymerase Rpb2, domain 7 VCA1552_00068 PF04561 RNA polymerase Rpb2, domain 2 VCA1552_00068 PF04563 RNA polymerase beta subunit VCA1552_00068 PF00562 RNA polymerase Rpb2, domain 6 VCA1552_00068 PF04565 RNA polymerase Rpb2, domain 3 VCA1552_00069 PF04997 RNA polymerase Rpb1, domain 1 VCA1552_00069 PF00623 RNA polymerase Rpb1, domain 2 VCA1552_00069 PF04983 RNA polymerase Rpb1, domain 3 VCA1552_00069 PF04998 RNA polymerase Rpb1, domain 5 VCA1552_00069 PF05000 RNA polymerase Rpb1, domain 4 VCA1552_00070 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VCA1552_00071 PF00293 NUDIX domain VCA1552_00071 PF09297 NADH pyrophosphatase zinc ribbon domain VCA1552_00072 PF01208 Uroporphyrinogen decarboxylase (URO-D) VCA1552_00073 PF00440 Bacterial regulatory proteins, tetR family VCA1552_00073 PF08360 QacR-like protein, C-terminal region VCA1552_00075 PF01551 Peptidase family M23 VCA1552_00076 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VCA1552_00076 PF01676 Metalloenzyme superfamily VCA1552_00078 PF00939 Sodium:sulfate symporter transmembrane region VCA1552_00079 PF02666 Phosphatidylserine decarboxylase VCA1552_00080 PF03193 RsgA GTPase VCA1552_00081 PF00929 Exonuclease VCA1552_00092 PF08331 Domain of unknown function (DUF1730) VCA1552_00093 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VCA1552_00094 PF01520 N-acetylmuramoyl-L-alanine amidase VCA1552_00095 PF01119 DNA mismatch repair protein, C-terminal domain VCA1552_00095 PF08676 MutL C terminal dimerisation domain VCA1552_00097 PF17209 Hfq protein VCA1552_00098 PF16360 GTP-binding GTPase Middle Region VCA1552_00098 PF01926 50S ribosome-binding GTPase VCA1552_00098 PF13167 GTP-binding GTPase N-terminal VCA1552_00099 PF12221 Bacterial membrane protein N terminal VCA1552_00099 PF01145 SPFH domain / Band 7 family VCA1552_00100 PF01145 SPFH domain / Band 7 family VCA1552_00101 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VCA1552_00102 PF04102 SlyX VCA1552_00104 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCA1552_00104 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCA1552_00105 PF08348 YheO-like PAS domain VCA1552_00105 PF13309 HTH domain VCA1552_00106 PF02635 DsrE/DsrF-like family VCA1552_00107 PF02635 DsrE/DsrF-like family VCA1552_00109 PF00164 Ribosomal protein S12/S23 VCA1552_00110 PF00177 Ribosomal protein S7p/S5e VCA1552_00111 PF03144 Elongation factor Tu domain 2 VCA1552_00111 PF00009 Elongation factor Tu GTP binding domain VCA1552_00111 PF03764 Elongation factor G, domain IV VCA1552_00111 PF14492 Elongation Factor G, domain II VCA1552_00111 PF00679 Elongation factor G C-terminus VCA1552_00112 PF03143 Elongation factor Tu C-terminal domain VCA1552_00112 PF03144 Elongation factor Tu domain 2 VCA1552_00112 PF00009 Elongation factor Tu GTP binding domain VCA1552_00113 PF04324 BFD-like [2Fe-2S] binding domain VCA1552_00114 PF00210 Ferritin-like domain VCA1552_00115 PF01250 Ribosomal protein S6 VCA1552_00116 PF00436 Single-strand binding protein family VCA1552_00117 PF01084 Ribosomal protein S18 VCA1552_00118 PF03948 Ribosomal protein L9, C-terminal domain VCA1552_00118 PF01281 Ribosomal protein L9, N-terminal domain VCA1552_00120 PF03796 DnaB-like helicase C terminal domain VCA1552_00120 PF00772 DnaB-like helicase N terminal domain VCA1552_00121 PF00842 Alanine racemase, C-terminal domain VCA1552_00121 PF01168 Alanine racemase, N-terminal domain VCA1552_00122 PF01894 Uncharacterised protein family UPF0047 VCA1552_00123 PF00342 Phosphoglucose isomerase VCA1552_00124 PF12706 Beta-lactamase superfamily domain VCA1552_00126 PF01475 Ferric uptake regulator family VCA1552_00127 PF01207 Dihydrouridine synthase (Dus) VCA1552_00128 PF09583 Phage shock protein G (Phageshock_PspG) VCA1552_00131 PF00667 FAD binding domain VCA1552_00131 PF00175 Oxidoreductase NAD-binding domain VCA1552_00131 PF00258 Flavodoxin VCA1552_00132 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VCA1552_00132 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VCA1552_00133 PF01507 Phosphoadenosine phosphosulfate reductase family VCA1552_00146 PF00999 Sodium/hydrogen exchanger family VCA1552_00147 PF02310 B12 binding domain VCA1552_00147 PF02574 Homocysteine S-methyltransferase VCA1552_00147 PF02965 Vitamin B12 dependent methionine synthase, activation domain VCA1552_00147 PF00809 Pterin binding enzyme VCA1552_00147 PF02607 B12 binding domain VCA1552_00148 PF00696 Amino acid kinase family VCA1552_00148 PF01842 ACT domain VCA1552_00150 PF00266 Aminotransferase class-V VCA1552_00152 PF17755 UvrA DNA-binding domain VCA1552_00152 PF17760 UvrA interaction domain VCA1552_00152 PF00005 ABC transporter VCA1552_00153 PF00483 Nucleotidyl transferase VCA1552_00154 PF00196 Bacterial regulatory proteins, luxR family VCA1552_00155 PF00436 Single-strand binding protein family VCA1552_00156 PF17157 Gammaproteobacterial periplasmic sensor domain VCA1552_00156 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00156 PF00563 EAL domain VCA1552_00160 PF07660 Secretin and TonB N terminus short domain VCA1552_00160 PF11741 AMIN domain VCA1552_00160 PF00263 Bacterial type II and III secretion system protein VCA1552_00160 PF03958 Bacterial type II/III secretion system short domain VCA1552_00161 PF13401 AAA domain VCA1552_00161 PF01471 Putative peptidoglycan binding domain VCA1552_00163 PF00437 Type II/IV secretion system protein VCA1552_00164 PF00482 Type II secretion system (T2SS), protein F VCA1552_00167 PF07963 Prokaryotic N-terminal methylation motif VCA1552_00167 PF00114 Pilin (bacterial filament) VCA1552_00174 PF04085 rod shape-determining protein MreC VCA1552_00175 PF04093 rod shape-determining protein MreD VCA1552_00176 PF02545 Maf-like protein VCA1552_00177 PF00575 S1 RNA binding domain VCA1552_00177 PF10150 Ribonuclease E/G family VCA1552_00178 PF13116 Protein of unknown function VCA1552_00178 PF13502 AsmA-like C-terminal region VCA1552_00179 PF00795 Carbon-nitrogen hydrolase VCA1552_00180 PF01523 Putative modulator of DNA gyrase VCA1552_00182 PF06877 Regulator of ribonuclease activity B VCA1552_00185 PF00582 Universal stress protein family VCA1552_00187 PF16868 NMT1-like family VCA1552_00188 PF01316 Arginine repressor, DNA binding domain VCA1552_00188 PF02863 Arginine repressor, C-terminal domain VCA1552_00189 PF00056 lactate/malate dehydrogenase, NAD binding domain VCA1552_00189 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VCA1552_00190 PF13520 Amino acid permease VCA1552_00191 PF00348 Polyprenyl synthetase VCA1552_00192 PF00829 Ribosomal prokaryotic L21 protein VCA1552_00193 PF01016 Ribosomal L27 protein VCA1552_00194 PF01926 50S ribosome-binding GTPase VCA1552_00194 PF01018 GTP1/OBG VCA1552_00195 PF06738 Putative threonine/serine exporter VCA1552_00196 PF12821 Threonine/Serine exporter, ThrE VCA1552_00197 PF00186 Dihydrofolate reductase VCA1552_00198 PF00149 Calcineurin-like phosphoesterase VCA1552_00199 PF04379 ApaG domain VCA1552_00200 PF00398 Ribosomal RNA adenine dimethylase VCA1552_00201 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VCA1552_00202 PF09312 SurA N-terminal domain VCA1552_00203 PF03968 OstA-like protein VCA1552_00203 PF04453 LPS transport system D VCA1552_00204 PF05099 Tellurite resistance protein TerB VCA1552_00204 PF00226 DnaJ domain VCA1552_00210 PF12729 Four helix bundle sensory module for signal transduction VCA1552_00210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_00210 PF00672 HAMP domain VCA1552_00215 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VCA1552_00215 PF01464 Transglycosylase SLT domain VCA1552_00216 PF04362 Bacterial Fe(2+) trafficking VCA1552_00217 PF10576 Iron-sulfur binding domain of endonuclease III VCA1552_00217 PF14815 NUDIX domain VCA1552_00217 PF00730 HhH-GPD superfamily base excision DNA repair protein VCA1552_00217 PF00633 Helix-hairpin-helix motif VCA1552_00218 PF02390 Putative methyltransferase VCA1552_00219 PF04960 Glutaminase VCA1552_00220 PF04055 Radical SAM superfamily VCA1552_00220 PF06969 HemN C-terminal domain VCA1552_00221 PF01725 Ham1 family VCA1552_00223 PF02594 Uncharacterised ACR, YggU family COG1872 VCA1552_00224 PF02325 YGGT family VCA1552_00225 PF03807 NADP oxidoreductase coenzyme F420-dependent VCA1552_00225 PF14748 Pyrroline-5-carboxylate reductase dimerisation VCA1552_00226 PF01168 Alanine racemase, N-terminal domain VCA1552_00227 PF00437 Type II/IV secretion system protein VCA1552_00228 PF00437 Type II/IV secretion system protein VCA1552_00230 PF00579 tRNA synthetases class I (W and Y) VCA1552_00230 PF01479 S4 domain VCA1552_00231 PF03652 Holliday junction resolvase VCA1552_00232 PF02622 Uncharacterized ACR, COG1678 VCA1552_00233 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VCA1552_00233 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VCA1552_00234 PF04452 RNA methyltransferase VCA1552_00235 PF04231 Endonuclease I VCA1552_00236 PF10263 SprT-like family VCA1552_00236 PF17283 SprT-like zinc ribbon domain VCA1552_00237 PF02773 S-adenosylmethionine synthetase, C-terminal domain VCA1552_00237 PF00438 S-adenosylmethionine synthetase, N-terminal domain VCA1552_00237 PF02772 S-adenosylmethionine synthetase, central domain VCA1552_00238 PF00456 Transketolase, thiamine diphosphate binding domain VCA1552_00238 PF02779 Transketolase, pyrimidine binding domain VCA1552_00238 PF02780 Transketolase, C-terminal domain VCA1552_00239 PF03466 LysR substrate binding domain VCA1552_00239 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_00240 PF00593 TonB dependent receptor VCA1552_00240 PF07715 TonB-dependent Receptor Plug Domain VCA1552_00241 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCA1552_00241 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCA1552_00242 PF00162 Phosphoglycerate kinase VCA1552_00243 PF01116 Fructose-bisphosphate aldolase class-II VCA1552_00244 PF00924 Mechanosensitive ion channel VCA1552_00244 PF05552 Conserved TM helix VCA1552_00245 PF01810 LysE type translocator VCA1552_00246 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_00246 PF03466 LysR substrate binding domain VCA1552_00247 PF04402 Protein of unknown function (DUF541) VCA1552_00249 PF02887 Pyruvate kinase, alpha/beta domain VCA1552_00249 PF00224 Pyruvate kinase, barrel domain VCA1552_00250 PF08220 DeoR-like helix-turn-helix domain VCA1552_00250 PF00455 DeoR C terminal sensor domain VCA1552_00251 PF01380 SIS domain VCA1552_00252 PF03480 Bacterial extracellular solute-binding protein, family 7 VCA1552_00263 PF00075 RNase H VCA1552_00264 PF00665 Integrase core domain VCA1552_00265 PF01527 Transposase VCA1552_00266 PF13737 Transposase DDE domain VCA1552_00267 PF00114 Pilin (bacterial filament) VCA1552_00267 PF07963 Prokaryotic N-terminal methylation motif VCA1552_00268 PF01476 LysM domain VCA1552_00268 PF01551 Peptidase family M23 VCA1552_00268 PF08525 Opacity-associated protein A N-terminal motif VCA1552_00274 PF04002 RadC-like JAB domain VCA1552_00278 PF01527 Transposase VCA1552_00279 PF00665 Integrase core domain VCA1552_00280 PF00589 Phage integrase family VCA1552_00280 PF13356 Arm DNA-binding domain VCA1552_00282 PF04546 Sigma-70, non-essential region VCA1552_00282 PF03979 Sigma-70 factor, region 1.1 VCA1552_00282 PF00140 Sigma-70 factor, region 1.2 VCA1552_00282 PF04542 Sigma-70 region 2 VCA1552_00282 PF04545 Sigma-70, region 4 VCA1552_00282 PF04539 Sigma-70 region 3 VCA1552_00283 PF08278 DNA primase DnaG DnaB-binding VCA1552_00283 PF08275 DNA primase catalytic core, N-terminal domain VCA1552_00283 PF01807 CHC2 zinc finger VCA1552_00283 PF10410 DnaB-helicase binding domain of primase VCA1552_00284 PF09424 Yqey-like protein VCA1552_00285 PF01165 Ribosomal protein S21 VCA1552_00286 PF00814 Glycoprotease family VCA1552_00287 PF00561 alpha/beta hydrolase fold VCA1552_00288 PF02660 Glycerol-3-phosphate acyltransferase VCA1552_00289 PF02152 Dihydroneopterin aldolase VCA1552_00290 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCA1552_00291 PF02673 Bacitracin resistance protein BacA VCA1552_00292 PF04977 Septum formation initiator VCA1552_00293 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VCA1552_00294 PF02542 YgbB family VCA1552_00295 PF01142 tRNA pseudouridine synthase D (TruD) VCA1552_00296 PF01975 Survival protein SurE VCA1552_00298 PF01476 LysM domain VCA1552_00298 PF01551 Peptidase family M23 VCA1552_00299 PF00140 Sigma-70 factor, region 1.2 VCA1552_00299 PF04539 Sigma-70 region 3 VCA1552_00299 PF04545 Sigma-70, region 4 VCA1552_00299 PF04542 Sigma-70 region 2 VCA1552_00300 PF05190 MutS family domain IV VCA1552_00300 PF00488 MutS domain V VCA1552_00300 PF01624 MutS domain I VCA1552_00300 PF05188 MutS domain II VCA1552_00300 PF05192 MutS domain III VCA1552_00301 PF00291 Pyridoxal-phosphate dependent enzyme VCA1552_00303 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00304 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00305 PF00005 ABC transporter VCA1552_00305 PF12857 TOBE-like domain VCA1552_00306 PF02464 Competence-damaged protein VCA1552_00307 PF00154 recA bacterial DNA recombination protein VCA1552_00308 PF02631 RecX family VCA1552_00309 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VCA1552_00309 PF01411 tRNA synthetases class II (A) VCA1552_00309 PF02272 DHHA1 domain VCA1552_00310 PF01842 ACT domain VCA1552_00310 PF13840 ACT domain VCA1552_00310 PF00696 Amino acid kinase family VCA1552_00311 PF02599 Global regulator protein family VCA1552_00320 PF04277 Oxaloacetate decarboxylase, gamma chain VCA1552_00321 PF00682 HMGL-like VCA1552_00321 PF02436 Conserved carboxylase domain VCA1552_00321 PF00364 Biotin-requiring enzyme VCA1552_00322 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCA1552_00324 PF09335 SNARE associated Golgi protein VCA1552_00325 PF00675 Insulinase (Peptidase family M16) VCA1552_00325 PF05193 Peptidase M16 inactive domain VCA1552_00326 PF04262 Glutamate-cysteine ligase VCA1552_00327 PF02664 S-Ribosylhomocysteinase (LuxS) VCA1552_00328 PF01595 Cyclin M transmembrane N-terminal domain VCA1552_00328 PF03471 Transporter associated domain VCA1552_00328 PF00571 CBS domain VCA1552_00329 PF01578 Cytochrome C assembly protein VCA1552_00330 PF00448 SRP54-type protein, GTPase domain VCA1552_00330 PF02881 SRP54-type protein, helical bundle domain VCA1552_00330 PF02978 Signal peptide binding domain VCA1552_00331 PF00886 Ribosomal protein S16 VCA1552_00332 PF01782 RimM N-terminal domain VCA1552_00332 PF05239 PRC-barrel domain VCA1552_00333 PF01746 tRNA (Guanine-1)-methyltransferase VCA1552_00334 PF01245 Ribosomal protein L19 VCA1552_00335 PF13180 PDZ domain VCA1552_00336 PF00595 PDZ domain VCA1552_00338 PF03969 AFG1-like ATPase VCA1552_00339 PF00572 Ribosomal protein L13 VCA1552_00340 PF00380 Ribosomal protein S9/S16 VCA1552_00341 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VCA1552_00341 PF00355 Rieske [2Fe-2S] domain VCA1552_00342 PF00033 Cytochrome b/b6/petB VCA1552_00342 PF00032 Cytochrome b(C-terminal)/b6/petD VCA1552_00343 PF02167 Cytochrome C1 family VCA1552_00344 PF00043 Glutathione S-transferase, C-terminal domain VCA1552_00344 PF02798 Glutathione S-transferase, N-terminal domain VCA1552_00345 PF04386 Stringent starvation protein B VCA1552_00346 PF04972 BON domain VCA1552_00347 PF13580 SIS domain VCA1552_00348 PF02021 Uncharacterised protein family UPF0102 VCA1552_00349 PF04348 LppC putative lipoprotein VCA1552_00350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCA1552_00351 PF00440 Bacterial regulatory proteins, tetR family VCA1552_00352 PF00156 Phosphoribosyl transferase domain VCA1552_00353 PF00484 Carbonic anhydrase VCA1552_00354 PF00916 Sulfate permease family VCA1552_00354 PF01740 STAS domain VCA1552_00355 PF00005 ABC transporter VCA1552_00356 PF01061 ABC-2 type transporter VCA1552_00357 PF02569 Pantoate-beta-alanine ligase VCA1552_00358 PF02548 Ketopantoate hydroxymethyltransferase VCA1552_00359 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCA1552_00360 PF01743 Poly A polymerase head domain VCA1552_00360 PF12627 Probable RNA and SrmB- binding site of polymerase A VCA1552_00360 PF12626 Polymerase A arginine-rich C-terminus VCA1552_00361 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCA1552_00362 PF01258 Prokaryotic dksA/traR C4-type zinc finger VCA1552_00363 PF03749 Sugar fermentation stimulation protein RE domain VCA1552_00363 PF17746 SfsA N-terminal OB domain VCA1552_00365 PF00271 Helicase conserved C-terminal domain VCA1552_00365 PF04408 Helicase associated domain (HA2) VCA1552_00365 PF00270 DEAD/DEAH box helicase VCA1552_00365 PF08482 ATP-dependent helicase C-terminal VCA1552_00366 PF14814 Bifunctional transglycosylase second domain VCA1552_00366 PF00912 Transglycosylase VCA1552_00366 PF00905 Penicillin binding protein transpeptidase domain VCA1552_00367 PF01734 Patatin-like phospholipase VCA1552_00368 PF11791 Aconitate B N-terminal domain VCA1552_00368 PF06434 Aconitate hydratase 2 N-terminus VCA1552_00368 PF00330 Aconitase family (aconitate hydratase) VCA1552_00369 PF06062 Uncharacterised protein family (UPF0231) VCA1552_00370 PF00543 Nitrogen regulatory protein P-II VCA1552_00371 PF00909 Ammonium Transporter Family VCA1552_00372 PF13416 Bacterial extracellular solute-binding protein VCA1552_00374 PF00005 ABC transporter VCA1552_00374 PF08402 TOBE domain VCA1552_00375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCA1552_00375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCA1552_00375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCA1552_00375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCA1552_00376 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VCA1552_00376 PF06165 Glycosyltransferase family 36 VCA1552_00377 PF02838 Glycosyl hydrolase family 20, domain 2 VCA1552_00377 PF00728 Glycosyl hydrolase family 20, catalytic domain VCA1552_00378 PF01869 BadF/BadG/BcrA/BcrD ATPase family VCA1552_00380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_00380 PF00005 ABC transporter VCA1552_00381 PF00005 ABC transporter VCA1552_00381 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_00382 PF12911 N-terminal TM domain of oligopeptide transport permease C VCA1552_00382 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00383 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00384 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCA1552_00385 PF00072 Response regulator receiver domain VCA1552_00385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00385 PF09308 LuxQ, periplasmic VCA1552_00385 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_00386 PF05175 Methyltransferase small domain VCA1552_00386 PF08468 Methyltransferase small domain N-terminal VCA1552_00387 PF01594 AI-2E family transporter VCA1552_00389 PF00202 Aminotransferase class-III VCA1552_00390 PF01521 Iron-sulphur cluster biosynthesis VCA1552_00392 PF00873 AcrB/AcrD/AcrF family VCA1552_00393 PF04225 Opacity-associated protein A LysM-like domain VCA1552_00393 PF01551 Peptidase family M23 VCA1552_00394 PF01479 S4 domain VCA1552_00394 PF00579 tRNA synthetases class I (W and Y) VCA1552_00395 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VCA1552_00396 PF13609 Gram-negative porin VCA1552_00397 PF01272 Transcription elongation factor, GreA/GreB, C-term VCA1552_00397 PF03449 Transcription elongation factor, N-terminal VCA1552_00398 PF01985 CRS1 / YhbY (CRM) domain VCA1552_00399 PF01728 FtsJ-like methyltransferase VCA1552_00400 PF06480 FtsH Extracellular VCA1552_00400 PF17862 AAA+ lid domain VCA1552_00400 PF01434 Peptidase family M41 VCA1552_00400 PF00004 ATPase family associated with various cellular activities (AAA) VCA1552_00401 PF00809 Pterin binding enzyme VCA1552_00402 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCA1552_00402 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCA1552_00402 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCA1552_00402 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCA1552_00404 PF03840 Preprotein translocase SecG subunit VCA1552_00408 PF17384 RimP C-terminal SH3 domain VCA1552_00408 PF02576 RimP N-terminal domain VCA1552_00409 PF00575 S1 RNA binding domain VCA1552_00409 PF08529 NusA N-terminal domain VCA1552_00409 PF13184 NusA-like KH domain VCA1552_00410 PF04760 Translation initiation factor IF-2, N-terminal region VCA1552_00410 PF00009 Elongation factor Tu GTP binding domain VCA1552_00410 PF11987 Translation-initiation factor 2 VCA1552_00410 PF08364 Bacterial translation initiation factor IF-2 associated region VCA1552_00411 PF02033 Ribosome-binding factor A VCA1552_00412 PF09157 Pseudouridine synthase II TruB, C-terminal VCA1552_00412 PF16198 tRNA pseudouridylate synthase B C-terminal domain VCA1552_00412 PF01509 TruB family pseudouridylate synthase (N terminal domain) VCA1552_00414 PF00312 Ribosomal protein S15 VCA1552_00415 PF00013 KH domain VCA1552_00415 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VCA1552_00415 PF01138 3' exoribonuclease family, domain 1 VCA1552_00415 PF00575 S1 RNA binding domain VCA1552_00415 PF03725 3' exoribonuclease family, domain 2 VCA1552_00416 PF13181 Tetratricopeptide repeat VCA1552_00416 PF07719 Tetratricopeptide repeat VCA1552_00421 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00421 PF03707 Bacterial signalling protein N terminal repeat VCA1552_00421 PF00563 EAL domain VCA1552_00423 PF13508 Acetyltransferase (GNAT) domain VCA1552_00426 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00426 PF00563 EAL domain VCA1552_00426 PF03707 Bacterial signalling protein N terminal repeat VCA1552_00427 PF16658 Class II release factor RF3, C-terminal domain VCA1552_00427 PF03144 Elongation factor Tu domain 2 VCA1552_00427 PF00009 Elongation factor Tu GTP binding domain VCA1552_00428 PF00271 Helicase conserved C-terminal domain VCA1552_00428 PF00270 DEAD/DEAH box helicase VCA1552_00429 PF05175 Methyltransferase small domain VCA1552_00430 PF05525 Branched-chain amino acid transport protein VCA1552_00431 PF00472 RF-1 domain VCA1552_00431 PF03462 PCRF domain VCA1552_00432 PF01336 OB-fold nucleic acid binding domain VCA1552_00432 PF00152 tRNA synthetases class II (D, K and N) VCA1552_00433 PF00072 Response regulator receiver domain VCA1552_00433 PF00158 Sigma-54 interaction domain VCA1552_00433 PF02954 Bacterial regulatory protein, Fis family VCA1552_00435 PF00248 Aldo/keto reductase family VCA1552_00436 PF02976 DNA mismatch repair enzyme MutH VCA1552_00437 PF00293 NUDIX domain VCA1552_00438 PF05524 PEP-utilising enzyme, N-terminal VCA1552_00438 PF00391 PEP-utilising enzyme, mobile domain VCA1552_00438 PF01590 GAF domain VCA1552_00438 PF02896 PEP-utilising enzyme, TIM barrel domain VCA1552_00439 PF01925 Sulfite exporter TauE/SafE VCA1552_00440 PF01790 Prolipoprotein diacylglyceryl transferase VCA1552_00441 PF00303 Thymidylate synthase VCA1552_00442 PF02690 Na+/Pi-cotransporter VCA1552_00443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_00443 PF03466 LysR substrate binding domain VCA1552_00444 PF01022 Bacterial regulatory protein, arsR family VCA1552_00445 PF01649 Ribosomal protein S20 VCA1552_00446 PF03023 Lipid II flippase MurJ VCA1552_00447 PF06574 FAD synthetase VCA1552_00447 PF01687 Riboflavin kinase VCA1552_00448 PF00133 tRNA synthetases class I (I, L, M and V) VCA1552_00448 PF06827 Zinc finger found in FPG and IleRS VCA1552_00448 PF08264 Anticodon-binding domain of tRNA VCA1552_00449 PF01252 Signal peptidase (SPase) II VCA1552_00450 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCA1552_00451 PF02401 LytB protein VCA1552_00452 PF02554 Carbon starvation protein CstA VCA1552_00455 PF13580 SIS domain VCA1552_00456 PF03702 Anhydro-N-acetylmuramic acid kinase VCA1552_00457 PF00933 Glycosyl hydrolase family 3 N terminal domain VCA1552_00458 PF04397 LytTr DNA-binding domain VCA1552_00458 PF00072 Response regulator receiver domain VCA1552_00459 PF06580 Histidine kinase VCA1552_00459 PF07694 5TMR of 5TMR-LYT VCA1552_00460 PF00793 DAHP synthetase I family VCA1552_00461 PF01817 Chorismate mutase type II VCA1552_00461 PF02153 Prephenate dehydrogenase VCA1552_00462 PF07238 PilZ domain VCA1552_00463 PF00005 ABC transporter VCA1552_00463 PF12848 ABC transporter VCA1552_00464 PF01464 Transglycosylase SLT domain VCA1552_00464 PF14718 Soluble lytic murein transglycosylase L domain VCA1552_00465 PF01371 Trp repressor protein VCA1552_00466 PF01931 Protein of unknown function DUF84 VCA1552_00467 PF00563 EAL domain VCA1552_00467 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00468 PF13416 Bacterial extracellular solute-binding protein VCA1552_00469 PF00800 Prephenate dehydratase VCA1552_00469 PF01817 Chorismate mutase type II VCA1552_00471 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCA1552_00472 PF13525 Outer membrane lipoprotein VCA1552_00473 PF01479 S4 domain VCA1552_00473 PF00849 RNA pseudouridylate synthase VCA1552_00475 PF10431 C-terminal, D2-small domain, of ClpB protein VCA1552_00475 PF02861 Clp amino terminal domain, pathogenicity island component VCA1552_00475 PF00004 ATPase family associated with various cellular activities (AAA) VCA1552_00475 PF07724 AAA domain (Cdc48 subfamily) VCA1552_00475 PF17871 AAA lid domain VCA1552_00482 PF00881 Nitroreductase family VCA1552_00483 PF00037 4Fe-4S binding domain VCA1552_00485 PF04381 Putative exonuclease, RdgC VCA1552_00486 PF00072 Response regulator receiver domain VCA1552_00486 PF00486 Transcriptional regulatory protein, C terminal VCA1552_00487 PF00989 PAS fold VCA1552_00487 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_00487 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00487 PF11808 Phosphate regulon sensor protein PhoR VCA1552_00488 PF12849 PBP superfamily domain VCA1552_00489 PF02541 Ppx/GppA phosphatase family VCA1552_00490 PF13090 Polyphosphate kinase C-terminal domain 2 VCA1552_00490 PF17941 Polyphosphate kinase C-terminal domain 1 VCA1552_00490 PF13089 Polyphosphate kinase N-terminal domain VCA1552_00490 PF02503 Polyphosphate kinase middle domain VCA1552_00491 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00492 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00493 PF00005 ABC transporter VCA1552_00494 PF01895 PhoU domain VCA1552_00495 PF03976 Polyphosphate kinase 2 (PPK2) VCA1552_00496 PF03932 CutC family VCA1552_00497 PF00578 AhpC/TSA family VCA1552_00497 PF10417 C-terminal domain of 1-Cys peroxiredoxin VCA1552_00498 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_00498 PF03466 LysR substrate binding domain VCA1552_00499 PF01274 Malate synthase VCA1552_00500 PF00463 Isocitrate lyase family VCA1552_00501 PF00571 CBS domain VCA1552_00502 PF02547 Queuosine biosynthesis protein VCA1552_00503 PF01702 Queuine tRNA-ribosyltransferase VCA1552_00504 PF02699 Preprotein translocase subunit VCA1552_00505 PF13721 SecD export protein N-terminal TM region VCA1552_00505 PF02355 Protein export membrane protein VCA1552_00505 PF07549 SecD/SecF GG Motif VCA1552_00506 PF07549 SecD/SecF GG Motif VCA1552_00506 PF02355 Protein export membrane protein VCA1552_00507 PF00459 Inositol monophosphatase family VCA1552_00508 PF00588 SpoU rRNA Methylase family VCA1552_00509 PF02082 Transcriptional regulator VCA1552_00510 PF00266 Aminotransferase class-V VCA1552_00511 PF01592 NifU-like N terminal domain VCA1552_00512 PF01521 Iron-sulphur cluster biosynthesis VCA1552_00513 PF00226 DnaJ domain VCA1552_00513 PF07743 HSCB C-terminal oligomerisation domain VCA1552_00514 PF00012 Hsp70 protein VCA1552_00515 PF00111 2Fe-2S iron-sulfur cluster binding domain VCA1552_00516 PF04384 Iron-sulphur cluster assembly VCA1552_00517 PF12404 Peptidase VCA1552_00517 PF00883 Cytosol aminopeptidase family, catalytic domain VCA1552_00518 PF00334 Nucleoside diphosphate kinase VCA1552_00519 PF04055 Radical SAM superfamily VCA1552_00520 PF13464 Domain of unknown function (DUF4115) VCA1552_00521 PF04551 GcpE protein VCA1552_00522 PF13393 Histidyl-tRNA synthetase VCA1552_00522 PF03129 Anticodon binding domain VCA1552_00523 PF09976 Tetratricopeptide repeat-like domain VCA1552_00524 PF13360 PQQ-like domain VCA1552_00525 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VCA1552_00525 PF01926 50S ribosome-binding GTPase VCA1552_00528 PF13742 OB-fold nucleic acid binding domain VCA1552_00528 PF02601 Exonuclease VII, large subunit VCA1552_00529 PF00478 IMP dehydrogenase / GMP reductase domain VCA1552_00529 PF00571 CBS domain VCA1552_00530 PF02540 NAD synthase VCA1552_00530 PF00958 GMP synthase C terminal domain VCA1552_00530 PF00117 Glutamine amidotransferase class-I VCA1552_00531 PF06483 Chitinase C VCA1552_00531 PF00704 Glycosyl hydrolases family 18 VCA1552_00532 PF01184 GPR1/FUN34/yaaH family VCA1552_00533 PF00550 Phosphopantetheine attachment site VCA1552_00533 PF00857 Isochorismatase family VCA1552_00534 PF00501 AMP-binding enzyme VCA1552_00534 PF13193 AMP-binding enzyme C-terminal domain VCA1552_00535 PF00425 chorismate binding enzyme VCA1552_00538 PF01497 Periplasmic binding protein VCA1552_00539 PF01032 FecCD transport family VCA1552_00540 PF01032 FecCD transport family VCA1552_00541 PF00005 ABC transporter VCA1552_00542 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VCA1552_00542 PF01648 4'-phosphopantetheinyl transferase superfamily VCA1552_00543 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_00543 PF03466 LysR substrate binding domain VCA1552_00544 PF00753 Metallo-beta-lactamase superfamily VCA1552_00544 PF14864 Alkyl sulfatase C-terminal VCA1552_00544 PF14863 Alkyl sulfatase dimerisation VCA1552_00545 PF01235 Sodium:alanine symporter family VCA1552_00546 PF01266 FAD dependent oxidoreductase VCA1552_00547 PF03466 LysR substrate binding domain VCA1552_00547 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_00550 PF00072 Response regulator receiver domain VCA1552_00550 PF12431 Transcriptional regulator VCA1552_00551 PF17203 Single cache domain 3 VCA1552_00551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00552 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCA1552_00553 PF00364 Biotin-requiring enzyme VCA1552_00553 PF02436 Conserved carboxylase domain VCA1552_00553 PF00682 HMGL-like VCA1552_00554 PF04277 Oxaloacetate decarboxylase, gamma chain VCA1552_00555 PF03390 2-hydroxycarboxylate transporter family VCA1552_00556 PF08218 Citrate lyase ligase C-terminal domain VCA1552_00557 PF06857 Malonate decarboxylase delta subunit (MdcD) VCA1552_00558 PF03328 HpcH/HpaI aldolase/citrate lyase family VCA1552_00559 PF04223 Citrate lyase, alpha subunit (CitF) VCA1552_00560 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VCA1552_00561 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VCA1552_00563 PF00588 SpoU rRNA Methylase family VCA1552_00563 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCA1552_00564 PF11953 Domain of unknown function (DUF3470) VCA1552_00564 PF00037 4Fe-4S binding domain VCA1552_00576 PF00171 Aldehyde dehydrogenase family VCA1552_00577 PF12561 ToxR activated gene A lipoprotein domain VCA1552_00577 PF00041 Fibronectin type III domain VCA1552_00580 PF08534 Redoxin VCA1552_00581 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_00582 PF00486 Transcriptional regulatory protein, C terminal VCA1552_00584 PF07963 Prokaryotic N-terminal methylation motif VCA1552_00584 PF05946 Toxin-coregulated pilus subunit TcpA VCA1552_00586 PF10671 Toxin co-regulated pilus biosynthesis protein Q VCA1552_00590 PF17456 Toxin-coregulated pilus protein S VCA1552_00591 PF00437 Type II/IV secretion system protein VCA1552_00592 PF00482 Type II secretion system (T2SS), protein F VCA1552_00593 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F VCA1552_00594 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family VCA1552_00595 PF01478 Type IV leader peptidase family VCA1552_00595 PF06750 Bacterial Peptidase A24 N-terminal domain VCA1552_00596 PF00672 HAMP domain VCA1552_00596 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_00596 PF02743 Cache domain VCA1552_00600 PF04225 Opacity-associated protein A LysM-like domain VCA1552_00600 PF01551 Peptidase family M23 VCA1552_00602 PF13322 Domain of unknown function (DUF4092) VCA1552_00602 PF17291 N-terminal domain of M60-like peptidases VCA1552_00602 PF13402 Peptidase M60, enhancin and enhancin-like VCA1552_00603 PF00589 Phage integrase family VCA1552_00603 PF13356 Arm DNA-binding domain VCA1552_00605 PF01668 SmpB protein VCA1552_00606 PF03364 Polyketide cyclase / dehydrase and lipid transport VCA1552_00607 PF03658 RnfH family Ubiquitin VCA1552_00608 PF04355 SmpA / OmlA family VCA1552_00609 PF02463 RecF/RecN/SMC N terminal domain VCA1552_00610 PF01513 ATP-NAD kinase VCA1552_00611 PF01025 GrpE VCA1552_00612 PF00012 Hsp70 protein VCA1552_00613 PF00684 DnaJ central domain VCA1552_00613 PF01556 DnaJ C terminal domain VCA1552_00613 PF00226 DnaJ domain VCA1552_00614 PF00114 Pilin (bacterial filament) VCA1552_00614 PF07963 Prokaryotic N-terminal methylation motif VCA1552_00619 PF03806 AbgT putative transporter family VCA1552_00620 PF14437 MafB19-like deaminase VCA1552_00622 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_00622 PF01464 Transglycosylase SLT domain VCA1552_00623 PF02769 AIR synthase related protein, C-terminal domain VCA1552_00623 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VCA1552_00623 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VCA1552_00624 PF01797 Transposase IS200 like VCA1552_00626 PF06786 Uncharacterised protein family (UPF0253) VCA1552_00628 PF03129 Anticodon binding domain VCA1552_00628 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCA1552_00628 PF04073 Aminoacyl-tRNA editing domain VCA1552_00629 PF01980 tRNA-methyltransferase O VCA1552_00629 PF18389 TrmO C-terminal domain VCA1552_00630 PF01197 Ribosomal protein L31 VCA1552_00631 PF00444 Ribosomal protein L36 VCA1552_00632 PF03806 AbgT putative transporter family VCA1552_00633 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VCA1552_00636 PF13302 Acetyltransferase (GNAT) domain VCA1552_00639 PF04287 tRNA pseudouridine synthase C VCA1552_00640 PF00849 RNA pseudouridylate synthase VCA1552_00641 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VCA1552_00641 PF02779 Transketolase, pyrimidine binding domain VCA1552_00641 PF02780 Transketolase, C-terminal domain VCA1552_00642 PF00348 Polyprenyl synthetase VCA1552_00643 PF02609 Exonuclease VII small subunit VCA1552_00644 PF01618 MotA/TolQ/ExbB proton channel family VCA1552_00645 PF13677 Membrane MotB of proton-channel complex MotA/MotB VCA1552_00645 PF00691 OmpA family VCA1552_00646 PF02568 Thiamine biosynthesis protein (ThiI) VCA1552_00646 PF02926 THUMP domain VCA1552_00648 PF03466 LysR substrate binding domain VCA1552_00648 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_00649 PF04241 Protein of unknown function (DUF423) VCA1552_00650 PF01367 5'-3' exonuclease, C-terminal SAM fold VCA1552_00650 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCA1552_00651 PF03641 Possible lysine decarboxylase VCA1552_00651 PF11892 Domain of unknown function (DUF3412) VCA1552_00651 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VCA1552_00652 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00654 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VCA1552_00654 PF14489 QueF-like protein VCA1552_00655 PF07348 Syd protein (SUKH-2) VCA1552_00656 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VCA1552_00657 PF03180 NLPA lipoprotein VCA1552_00658 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00659 PF00005 ABC transporter VCA1552_00659 PF09383 NIL domain VCA1552_00661 PF00356 Bacterial regulatory proteins, lacI family VCA1552_00662 PF02378 Phosphotransferase system, EIIC VCA1552_00662 PF00367 phosphotransferase system, EIIB VCA1552_00663 PF00128 Alpha amylase, catalytic domain VCA1552_00663 PF16657 Maltogenic Amylase, C-terminal domain VCA1552_00668 PF13533 Biotin-lipoyl like VCA1552_00669 PF00873 AcrB/AcrD/AcrF family VCA1552_00670 PF01451 Low molecular weight phosphotyrosine protein phosphatase VCA1552_00672 PF02350 UDP-N-acetylglucosamine 2-epimerase VCA1552_00673 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VCA1552_00673 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VCA1552_00673 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VCA1552_00674 PF14602 Hexapeptide repeat of succinyl-transferase VCA1552_00674 PF12464 Maltose acetyltransferase VCA1552_00678 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_00680 PF00862 Sucrose synthase VCA1552_00680 PF00534 Glycosyl transferases group 1 VCA1552_00682 PF03808 Glycosyl transferase WecB/TagA/CpsF family VCA1552_00685 PF12561 ToxR activated gene A lipoprotein domain VCA1552_00685 PF17945 Beta/Gamma crystallin VCA1552_00688 PF02397 Bacterial sugar transferase VCA1552_00690 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VCA1552_00690 PF10531 SLBB domain VCA1552_00690 PF02563 Polysaccharide biosynthesis/export protein VCA1552_00691 PF13807 G-rich domain on putative tyrosine kinase VCA1552_00691 PF02706 Chain length determinant protein VCA1552_00691 PF13614 AAA domain VCA1552_00695 PF00464 Serine hydroxymethyltransferase VCA1552_00697 PF04055 Radical SAM superfamily VCA1552_00697 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VCA1552_00698 PF03099 Biotin/lipoate A/B protein ligase family VCA1552_00699 PF04359 Protein of unknown function (DUF493) VCA1552_00700 PF07943 Penicillin-binding protein 5, C-terminal domain VCA1552_00700 PF00768 D-alanyl-D-alanine carboxypeptidase VCA1552_00701 PF03330 Lytic transglycolase VCA1552_00701 PF05036 Sporulation related domain VCA1552_00702 PF01098 Cell cycle protein VCA1552_00703 PF03717 Penicillin-binding Protein dimerisation domain VCA1552_00703 PF00905 Penicillin binding protein transpeptidase domain VCA1552_00704 PF02590 Predicted SPOUT methyltransferase VCA1552_00706 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VCA1552_00706 PF06144 DNA polymerase III, delta subunit VCA1552_00707 PF04390 Lipopolysaccharide-assembly VCA1552_00708 PF08264 Anticodon-binding domain of tRNA VCA1552_00708 PF13603 Leucyl-tRNA synthetase, Domain 2 VCA1552_00708 PF00133 tRNA synthetases class I (I, L, M and V) VCA1552_00709 PF07295 Zinc-ribbon containing domain VCA1552_00710 PF00795 Carbon-nitrogen hydrolase VCA1552_00711 PF00571 CBS domain VCA1552_00711 PF03471 Transporter associated domain VCA1552_00712 PF02130 Uncharacterized protein family UPF0054 VCA1552_00713 PF02562 PhoH-like protein VCA1552_00714 PF04055 Radical SAM superfamily VCA1552_00714 PF01938 TRAM domain VCA1552_00714 PF00919 Uncharacterized protein family UPF0004 VCA1552_00715 PF01494 FAD binding domain VCA1552_00716 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCA1552_00717 PF05524 PEP-utilising enzyme, N-terminal VCA1552_00717 PF02896 PEP-utilising enzyme, TIM barrel domain VCA1552_00717 PF00391 PEP-utilising enzyme, mobile domain VCA1552_00718 PF00381 PTS HPr component phosphorylation site VCA1552_00719 PF00291 Pyridoxal-phosphate dependent enzyme VCA1552_00721 PF04354 ZipA, C-terminal FtsZ-binding domain VCA1552_00722 PF12826 Helix-hairpin-helix motif VCA1552_00722 PF03120 NAD-dependent DNA ligase OB-fold domain VCA1552_00722 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VCA1552_00722 PF01653 NAD-dependent DNA ligase adenylation domain VCA1552_00722 PF00533 BRCA1 C Terminus (BRCT) domain VCA1552_00723 PF13609 Gram-negative porin VCA1552_00725 PF13411 MerR HTH family regulatory protein VCA1552_00726 PF01957 NfeD-like C-terminal, partner-binding VCA1552_00727 PF16200 C-terminal region of band_7 VCA1552_00727 PF01145 SPFH domain / Band 7 family VCA1552_00728 PF00085 Thioredoxin VCA1552_00729 PF00106 short chain dehydrogenase VCA1552_00730 PF08338 Domain of unknown function (DUF1731) VCA1552_00730 PF01370 NAD dependent epimerase/dehydratase family VCA1552_00731 PF12850 Calcineurin-like phosphoesterase superfamily domain VCA1552_00733 PF17323 Trans-membrane regulatory protein ToxS VCA1552_00734 PF00486 Transcriptional regulatory protein, C terminal VCA1552_00735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00735 PF00183 Hsp90 protein VCA1552_00736 PF05191 Adenylate kinase, active site lid VCA1552_00737 PF00762 Ferrochelatase VCA1552_00738 PF00854 POT family VCA1552_00739 PF02357 Transcription termination factor nusG VCA1552_00740 PF00733 Asparagine synthase VCA1552_00740 PF13537 Glutamine amidotransferase domain VCA1552_00741 PF00999 Sodium/hydrogen exchanger family VCA1552_00741 PF02254 TrkA-N domain VCA1552_00742 PF00480 ROK family VCA1552_00742 PF01047 MarR family VCA1552_00743 PF01979 Amidohydrolase family VCA1552_00744 PF00367 phosphotransferase system, EIIB VCA1552_00744 PF02378 Phosphotransferase system, EIIC VCA1552_00744 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCA1552_00745 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VCA1552_00745 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCA1552_00747 PF01416 tRNA pseudouridine synthase VCA1552_00748 PF01039 Carboxyl transferase domain VCA1552_00748 PF17848 Acetyl-coA carboxylase zinc finger domain VCA1552_00749 PF08245 Mur ligase middle domain VCA1552_00749 PF02875 Mur ligase family, glutamate ligase domain VCA1552_00750 PF05036 Sporulation related domain VCA1552_00751 PF02674 Colicin V production protein VCA1552_00752 PF00156 Phosphoribosyl transferase domain VCA1552_00753 PF13726 Na+-H+ antiporter family VCA1552_00753 PF03553 Na+/H+ antiporter family VCA1552_00754 PF00929 Exonuclease VCA1552_00755 PF18393 MotY N-terminal domain VCA1552_00755 PF00691 OmpA family VCA1552_00756 PF10952 Protein of unknown function (DUF2753) VCA1552_00757 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_00758 PF00633 Helix-hairpin-helix motif VCA1552_00758 PF00730 HhH-GPD superfamily base excision DNA repair protein VCA1552_00758 PF10576 Iron-sulfur binding domain of endonuclease III VCA1552_00759 PF02508 Rnf-Nqr subunit, membrane protein VCA1552_00760 PF04205 FMN-binding domain VCA1552_00761 PF03116 NQR2, RnfD, RnfE family VCA1552_00762 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VCA1552_00762 PF12838 4Fe-4S dicluster domain VCA1552_00762 PF13375 RnfC Barrel sandwich hybrid domain VCA1552_00762 PF10531 SLBB domain VCA1552_00763 PF04060 Putative Fe-S cluster VCA1552_00764 PF02508 Rnf-Nqr subunit, membrane protein VCA1552_00766 PF17757 UvrB interaction domain VCA1552_00766 PF02151 UvrB/uvrC motif VCA1552_00766 PF12344 Ultra-violet resistance protein B VCA1552_00766 PF04851 Type III restriction enzyme, res subunit VCA1552_00766 PF00271 Helicase conserved C-terminal domain VCA1552_00768 PF00072 Response regulator receiver domain VCA1552_00768 PF02954 Bacterial regulatory protein, Fis family VCA1552_00768 PF00158 Sigma-54 interaction domain VCA1552_00769 PF01627 Hpt domain VCA1552_00770 PF01933 Uncharacterised protein family UPF0052 VCA1552_00772 PF06463 Molybdenum Cofactor Synthesis C VCA1552_00772 PF04055 Radical SAM superfamily VCA1552_00773 PF00994 Probable molybdopterin binding domain VCA1552_00774 PF01967 MoaC family VCA1552_00775 PF02597 ThiS family VCA1552_00776 PF02391 MoaE protein VCA1552_00777 PF07694 5TMR of 5TMR-LYT VCA1552_00777 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00778 PF03061 Thioesterase superfamily VCA1552_00778 PF00571 CBS domain VCA1552_00778 PF00392 Bacterial regulatory proteins, gntR family VCA1552_00778 PF07085 DRTGG domain VCA1552_00779 PF00403 Heavy-metal-associated domain VCA1552_00780 PF01048 Phosphorylase superfamily VCA1552_00782 PF01588 Putative tRNA binding domain VCA1552_00782 PF09334 tRNA synthetases class I (M) VCA1552_00783 PF10609 NUBPL iron-transfer P-loop NTPase VCA1552_00784 PF00485 Phosphoribulokinase / Uridine kinase family VCA1552_00785 PF05170 AsmA family VCA1552_00786 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VCA1552_00786 PF12557 Cob(I)alamin adenosyltransferase N terminal VCA1552_00787 PF01451 Low molecular weight phosphotyrosine protein phosphatase VCA1552_00788 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCA1552_00792 PF08281 Sigma-70, region 4 VCA1552_00792 PF04542 Sigma-70 region 2 VCA1552_00793 PF00108 Thiolase, N-terminal domain VCA1552_00793 PF02803 Thiolase, C-terminal domain VCA1552_00794 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCA1552_00794 PF00378 Enoyl-CoA hydratase/isomerase VCA1552_00794 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCA1552_00795 PF00881 Nitroreductase family VCA1552_00796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_00796 PF03466 LysR substrate binding domain VCA1552_00797 PF00072 Response regulator receiver domain VCA1552_00799 PF04304 Protein of unknown function (DUF454) VCA1552_00800 PF00156 Phosphoribosyl transferase domain VCA1552_00801 PF12170 DNA polymerase III tau subunit V interacting with alpha VCA1552_00801 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VCA1552_00801 PF12169 DNA polymerase III subunits gamma and tau domain III VCA1552_00802 PF02575 YbaB/EbfC DNA-binding family VCA1552_00803 PF13662 Toprim domain VCA1552_00803 PF02132 RecR protein VCA1552_00804 PF03692 Putative zinc- or iron-chelating domain VCA1552_00805 PF03692 Putative zinc- or iron-chelating domain VCA1552_00806 PF00106 short chain dehydrogenase VCA1552_00807 PF08496 Peptidase family S49 N-terminal VCA1552_00807 PF01343 Peptidase family S49 VCA1552_00808 PF00291 Pyridoxal-phosphate dependent enzyme VCA1552_00809 PF13404 AsnC-type helix-turn-helix domain VCA1552_00809 PF01037 Lrp/AsnC ligand binding domain VCA1552_00812 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VCA1552_00814 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00814 PF08448 PAS fold VCA1552_00817 PF01022 Bacterial regulatory protein, arsR family VCA1552_00818 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCA1552_00818 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCA1552_00821 PF00704 Glycosyl hydrolases family 18 VCA1552_00821 PF06483 Chitinase C VCA1552_00823 PF01161 Phosphatidylethanolamine-binding protein VCA1552_00826 PF03481 Putative GTP-binding controlling metal-binding VCA1552_00826 PF01300 Telomere recombination VCA1552_00829 PF00072 Response regulator receiver domain VCA1552_00831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00831 PF00989 PAS fold VCA1552_00831 PF13188 PAS domain VCA1552_00831 PF13426 PAS domain VCA1552_00831 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_00832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00832 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_00833 PF13188 PAS domain VCA1552_00833 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00833 PF00563 EAL domain VCA1552_00833 PF03707 Bacterial signalling protein N terminal repeat VCA1552_00834 PF00158 Sigma-54 interaction domain VCA1552_00834 PF00072 Response regulator receiver domain VCA1552_00834 PF02954 Bacterial regulatory protein, Fis family VCA1552_00835 PF00072 Response regulator receiver domain VCA1552_00835 PF13188 PAS domain VCA1552_00835 PF08448 PAS fold VCA1552_00835 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_00835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00837 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCA1552_00838 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00839 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_00839 PF12911 N-terminal TM domain of oligopeptide transport permease C VCA1552_00840 PF00005 ABC transporter VCA1552_00840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_00841 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_00841 PF00005 ABC transporter VCA1552_00842 PF13409 Glutathione S-transferase, N-terminal domain VCA1552_00843 PF01515 Phosphate acetyl/butaryl transferase VCA1552_00843 PF07085 DRTGG domain VCA1552_00844 PF00871 Acetokinase family VCA1552_00845 PF04217 Protein of unknown function, DUF412 VCA1552_00846 PF09905 DNA-binding protein VF530 VCA1552_00848 PF02653 Branched-chain amino acid transport system / permease component VCA1552_00849 PF00005 ABC transporter VCA1552_00850 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00851 PF01207 Dihydrouridine synthase (Dus) VCA1552_00852 PF07517 SecA DEAD-like domain VCA1552_00852 PF01043 SecA preprotein cross-linking domain VCA1552_00852 PF02810 SEC-C motif VCA1552_00852 PF07516 SecA Wing and Scaffold domain VCA1552_00853 PF03548 Outer membrane lipoprotein carrier protein LolA VCA1552_00854 PF16193 AAA C-terminal domain VCA1552_00854 PF12002 MgsA AAA+ ATPase C terminal VCA1552_00854 PF00004 ATPase family associated with various cellular activities (AAA) VCA1552_00855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCA1552_00855 PF02403 Seryl-tRNA synthetase N-terminal domain VCA1552_00856 PF00202 Aminotransferase class-III VCA1552_00857 PF06968 Biotin and Thiamin Synthesis associated domain VCA1552_00857 PF04055 Radical SAM superfamily VCA1552_00858 PF00155 Aminotransferase class I and II VCA1552_00859 PF08241 Methyltransferase domain VCA1552_00862 PF01435 Peptidase family M48 VCA1552_00864 PF00106 short chain dehydrogenase VCA1552_00869 PF16036 Chalcone isomerase-like VCA1552_00871 PF08328 Adenylosuccinate lyase C-terminal VCA1552_00871 PF00206 Lyase VCA1552_00872 PF04356 Protein of unknown function (DUF489) VCA1552_00874 PF00294 pfkB family carbohydrate kinase VCA1552_00875 PF00816 H-NS histone family VCA1552_00877 PF03553 Na+/H+ antiporter family VCA1552_00879 PF01634 ATP phosphoribosyltransferase VCA1552_00879 PF08029 HisG, C-terminal domain VCA1552_00880 PF00815 Histidinol dehydrogenase VCA1552_00881 PF00155 Aminotransferase class I and II VCA1552_00882 PF00475 Imidazoleglycerol-phosphate dehydratase VCA1552_00882 PF08645 Polynucleotide kinase 3 phosphatase VCA1552_00883 PF00117 Glutamine amidotransferase class-I VCA1552_00884 PF00977 Histidine biosynthesis protein VCA1552_00885 PF00977 Histidine biosynthesis protein VCA1552_00886 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VCA1552_00886 PF01502 Phosphoribosyl-AMP cyclohydrolase VCA1552_00887 PF00849 RNA pseudouridylate synthase VCA1552_00888 PF03971 Monomeric isocitrate dehydrogenase VCA1552_00889 PF00313 'Cold-shock' DNA-binding domain VCA1552_00890 PF02617 ATP-dependent Clp protease adaptor protein ClpS VCA1552_00891 PF17871 AAA lid domain VCA1552_00891 PF00004 ATPase family associated with various cellular activities (AAA) VCA1552_00891 PF02861 Clp amino terminal domain, pathogenicity island component VCA1552_00891 PF10431 C-terminal, D2-small domain, of ClpB protein VCA1552_00891 PF07724 AAA domain (Cdc48 subfamily) VCA1552_00892 PF02080 TrkA-C domain VCA1552_00892 PF06826 Predicted Permease Membrane Region VCA1552_00893 PF00462 Glutaredoxin VCA1552_00894 PF00171 Aldehyde dehydrogenase family VCA1552_00894 PF00465 Iron-containing alcohol dehydrogenase VCA1552_00895 PF01380 SIS domain VCA1552_00895 PF01418 Helix-turn-helix domain, rpiR family VCA1552_00896 PF00282 Pyridoxal-dependent decarboxylase conserved domain VCA1552_00898 PF03956 Lysine exporter LysO VCA1552_00900 PF04993 TfoX N-terminal domain VCA1552_00900 PF04994 TfoX C-terminal domain VCA1552_00903 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_00903 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_00903 PF00989 PAS fold VCA1552_00905 PF00266 Aminotransferase class-V VCA1552_00908 PF18030 RimK PreATP-grasp domain VCA1552_00908 PF08443 RimK-like ATP-grasp domain VCA1552_00909 PF08003 Protein of unknown function (DUF1698) VCA1552_00910 PF13649 Methyltransferase domain VCA1552_00911 PF01904 Protein of unknown function DUF72 VCA1552_00912 PF00152 tRNA synthetases class II (D, K and N) VCA1552_00912 PF02938 GAD domain VCA1552_00912 PF01336 OB-fold nucleic acid binding domain VCA1552_00913 PF00265 Thymidine kinase VCA1552_00914 PF00375 Sodium:dicarboxylate symporter family VCA1552_00915 PF00290 Tryptophan synthase alpha chain VCA1552_00916 PF00291 Pyridoxal-phosphate dependent enzyme VCA1552_00917 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VCA1552_00917 PF00218 Indole-3-glycerol phosphate synthase VCA1552_00918 PF02885 Glycosyl transferase family, helical bundle domain VCA1552_00918 PF00591 Glycosyl transferase family, a/b domain VCA1552_00919 PF00117 Glutamine amidotransferase class-I VCA1552_00920 PF04715 Anthranilate synthase component I, N terminal region VCA1552_00920 PF00425 chorismate binding enzyme VCA1552_00922 PF02811 PHP domain VCA1552_00923 PF01300 Telomere recombination VCA1552_00924 PF00849 RNA pseudouridylate synthase VCA1552_00924 PF01479 S4 domain VCA1552_00925 PF00664 ABC transporter transmembrane region VCA1552_00925 PF00005 ABC transporter VCA1552_00926 PF00664 ABC transporter transmembrane region VCA1552_00926 PF00005 ABC transporter VCA1552_00927 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_00929 PF00266 Aminotransferase class-V VCA1552_00930 PF08448 PAS fold VCA1552_00930 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00931 PF02698 DUF218 domain VCA1552_00933 PF03949 Malic enzyme, NAD binding domain VCA1552_00933 PF00390 Malic enzyme, N-terminal domain VCA1552_00935 PF01259 SAICAR synthetase VCA1552_00939 PF00691 OmpA family VCA1552_00939 PF13488 Glycine zipper VCA1552_00942 PF02913 FAD linked oxidases, C-terminal domain VCA1552_00942 PF01565 FAD binding domain VCA1552_00942 PF13183 4Fe-4S dicluster domain VCA1552_00943 PF04191 Phospholipid methyltransferase VCA1552_00944 PF00089 Trypsin VCA1552_00946 PF00221 Aromatic amino acid lyase VCA1552_00947 PF17391 Urocanase N-terminal domain VCA1552_00947 PF17392 Urocanase C-terminal domain VCA1552_00947 PF01175 Urocanase Rossmann-like domain VCA1552_00948 PF00491 Arginase family VCA1552_00949 PF01979 Amidohydrolase family VCA1552_00950 PF00392 Bacterial regulatory proteins, gntR family VCA1552_00950 PF07702 UTRA domain VCA1552_00952 PF04269 Protein of unknown function, DUF440 VCA1552_00953 PF08207 Elongation factor P (EF-P) KOW-like domain VCA1552_00953 PF01132 Elongation factor P (EF-P) OB domain VCA1552_00953 PF09285 Elongation factor P, C-terminal VCA1552_00955 PF13426 PAS domain VCA1552_00955 PF00563 EAL domain VCA1552_00955 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00956 PF03104 DNA polymerase family B, exonuclease domain VCA1552_00956 PF00136 DNA polymerase family B VCA1552_00957 PF00196 Bacterial regulatory proteins, luxR family VCA1552_00957 PF00072 Response regulator receiver domain VCA1552_00958 PF08459 UvrC Helix-hairpin-helix N-terminal VCA1552_00958 PF02151 UvrB/uvrC motif VCA1552_00958 PF01541 GIY-YIG catalytic domain VCA1552_00959 PF01066 CDP-alcohol phosphatidyltransferase VCA1552_00964 PF00072 Response regulator receiver domain VCA1552_00964 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_00966 PF01409 tRNA synthetases class II core domain (F) VCA1552_00966 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VCA1552_00967 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VCA1552_00967 PF03483 B3/4 domain VCA1552_00967 PF03147 Ferredoxin-fold anticodon binding domain VCA1552_00967 PF01588 Putative tRNA binding domain VCA1552_00967 PF03484 tRNA synthetase B5 domain VCA1552_00968 PF00216 Bacterial DNA-binding protein VCA1552_00971 PF05724 Thiopurine S-methyltransferase (TPMT) VCA1552_00972 PF02222 ATP-grasp domain VCA1552_00974 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCA1552_00974 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VCA1552_00975 PF04172 LrgB-like family VCA1552_00976 PF03788 LrgA family VCA1552_00977 PF08411 Exonuclease C-terminal VCA1552_00977 PF00929 Exonuclease VCA1552_00979 PF01641 SelR domain VCA1552_00980 PF02277 Phosphoribosyltransferase VCA1552_00981 PF02654 Cobalamin-5-phosphate synthase VCA1552_00982 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VCA1552_00984 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VCA1552_00985 PF01032 FecCD transport family VCA1552_00986 PF00005 ABC transporter VCA1552_00989 PF00672 HAMP domain VCA1552_00989 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_00989 PF17200 Single Cache domain 2 VCA1552_00992 PF00994 Probable molybdopterin binding domain VCA1552_00994 PF00175 Oxidoreductase NAD-binding domain VCA1552_00994 PF00970 Oxidoreductase FAD-binding domain VCA1552_00994 PF00111 2Fe-2S iron-sulfur cluster binding domain VCA1552_00995 PF00268 Ribonucleotide reductase, small chain VCA1552_00996 PF03477 ATP cone domain VCA1552_00996 PF02867 Ribonucleotide reductase, barrel domain VCA1552_00996 PF00317 Ribonucleotide reductase, all-alpha domain VCA1552_00998 PF03989 DNA gyrase C-terminal domain, beta-propeller VCA1552_00998 PF00521 DNA gyrase/topoisomerase IV, subunit A VCA1552_01001 PF07690 Major Facilitator Superfamily VCA1552_01003 PF00925 GTP cyclohydrolase II VCA1552_01008 PF03734 L,D-transpeptidase catalytic domain VCA1552_01008 PF01471 Putative peptidoglycan binding domain VCA1552_01009 PF05951 Bacterial protein of unknown function (DUF882) VCA1552_01010 PF00753 Metallo-beta-lactamase superfamily VCA1552_01013 PF03480 Bacterial extracellular solute-binding protein, family 7 VCA1552_01015 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCA1552_01016 PF17200 Single Cache domain 2 VCA1552_01016 PF07730 Histidine kinase VCA1552_01017 PF00072 Response regulator receiver domain VCA1552_01017 PF00196 Bacterial regulatory proteins, luxR family VCA1552_01018 PF01047 MarR family VCA1552_01019 PF02028 BCCT, betaine/carnitine/choline family transporter VCA1552_01020 PF01522 Polysaccharide deacetylase VCA1552_01021 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCA1552_01022 PF02378 Phosphotransferase system, EIIC VCA1552_01023 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VCA1552_01024 PF11975 Family 4 glycosyl hydrolase C-terminal domain VCA1552_01024 PF02056 Family 4 glycosyl hydrolase VCA1552_01025 PF04794 YdjC-like protein VCA1552_01026 PF00356 Bacterial regulatory proteins, lacI family VCA1552_01027 PF13506 Glycosyl transferase family 21 VCA1552_01028 PF04349 Periplasmic glucan biosynthesis protein, MdoG VCA1552_01029 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01029 PF17200 Single Cache domain 2 VCA1552_01029 PF00672 HAMP domain VCA1552_01032 PF00155 Aminotransferase class I and II VCA1552_01036 PF08543 Phosphomethylpyrimidine kinase VCA1552_01037 PF00152 tRNA synthetases class II (D, K and N) VCA1552_01037 PF01336 OB-fold nucleic acid binding domain VCA1552_01038 PF00672 HAMP domain VCA1552_01038 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01039 PF01242 6-pyruvoyl tetrahydropterin synthase VCA1552_01040 PF03315 Serine dehydratase beta chain VCA1552_01040 PF03313 Serine dehydratase alpha chain VCA1552_01041 PF03222 Tryptophan/tyrosine permease family VCA1552_01042 PF00293 NUDIX domain VCA1552_01043 PF00425 chorismate binding enzyme VCA1552_01043 PF04715 Anthranilate synthase component I, N terminal region VCA1552_01046 PF04317 YcjX-like family, DUF463 VCA1552_01047 PF05128 Domain of unknown function (DUF697) VCA1552_01048 PF18024 Helix-turn-helix domain VCA1552_01048 PF00158 Sigma-54 interaction domain VCA1552_01049 PF13302 Acetyltransferase (GNAT) domain VCA1552_01051 PF00892 EamA-like transporter family VCA1552_01052 PF00842 Alanine racemase, C-terminal domain VCA1552_01052 PF01168 Alanine racemase, N-terminal domain VCA1552_01053 PF00672 HAMP domain VCA1552_01053 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01054 PF00939 Sodium:sulfate symporter transmembrane region VCA1552_01055 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_01055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01055 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01056 PF00158 Sigma-54 interaction domain VCA1552_01056 PF02954 Bacterial regulatory protein, Fis family VCA1552_01056 PF00072 Response regulator receiver domain VCA1552_01057 PF04393 Protein of unknown function (DUF535) VCA1552_01058 PF06629 MltA-interacting protein MipA VCA1552_01059 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01059 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01059 PF00672 HAMP domain VCA1552_01060 PF00072 Response regulator receiver domain VCA1552_01060 PF00486 Transcriptional regulatory protein, C terminal VCA1552_01064 PF13407 Periplasmic binding protein domain VCA1552_01065 PF00005 ABC transporter VCA1552_01066 PF02653 Branched-chain amino acid transport system / permease component VCA1552_01069 PF01970 Tripartite tricarboxylate transporter TctA family VCA1552_01072 PF07729 FCD domain VCA1552_01072 PF00392 Bacterial regulatory proteins, gntR family VCA1552_01074 PF00285 Citrate synthase, C-terminal domain VCA1552_01076 PF00694 Aconitase C-terminal domain VCA1552_01076 PF00330 Aconitase family (aconitate hydratase) VCA1552_01077 PF04303 PrpF protein VCA1552_01078 PF16177 Acetyl-coenzyme A synthetase N-terminus VCA1552_01078 PF00501 AMP-binding enzyme VCA1552_01078 PF13193 AMP-binding enzyme C-terminal domain VCA1552_01081 PF01797 Transposase IS200 like VCA1552_01082 PF01546 Peptidase family M20/M25/M40 VCA1552_01082 PF07687 Peptidase dimerisation domain VCA1552_01083 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_01084 PF04209 homogentisate 1,2-dioxygenase VCA1552_01086 PF14497 Glutathione S-transferase, C-terminal domain VCA1552_01086 PF02798 Glutathione S-transferase, N-terminal domain VCA1552_01087 PF00072 Response regulator receiver domain VCA1552_01088 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCA1552_01088 PF00072 Response regulator receiver domain VCA1552_01088 PF01627 Hpt domain VCA1552_01088 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01088 PF00672 HAMP domain VCA1552_01088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01089 PF08534 Redoxin VCA1552_01089 PF00462 Glutaredoxin VCA1552_01090 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01091 PF17785 PUA-like domain VCA1552_01091 PF10672 S-adenosylmethionine-dependent methyltransferase VCA1552_01092 PF00708 Acylphosphatase VCA1552_01093 PF04358 DsrC like protein VCA1552_01094 PF01027 Inhibitor of apoptosis-promoting Bax1 VCA1552_01095 PF00005 ABC transporter VCA1552_01096 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01097 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01098 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_01099 PF10414 Sirohaem synthase dimerisation region VCA1552_01099 PF14824 Sirohaem biosynthesis protein central VCA1552_01099 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCA1552_01102 PF04055 Radical SAM superfamily VCA1552_01103 PF06508 Queuosine biosynthesis protein QueC VCA1552_01107 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01107 PF00563 EAL domain VCA1552_01107 PF03707 Bacterial signalling protein N terminal repeat VCA1552_01109 PF17158 Membrane-associated sensor, integral membrane domain VCA1552_01109 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01110 PF00012 Hsp70 protein VCA1552_01111 PF00012 Hsp70 protein VCA1552_01113 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01113 PF00563 EAL domain VCA1552_01113 PF03707 Bacterial signalling protein N terminal repeat VCA1552_01118 PF00270 DEAD/DEAH box helicase VCA1552_01118 PF11898 Domain of unknown function (DUF3418) VCA1552_01118 PF04408 Helicase associated domain (HA2) VCA1552_01118 PF00271 Helicase conserved C-terminal domain VCA1552_01118 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VCA1552_01120 PF00012 Hsp70 protein VCA1552_01121 PF03099 Biotin/lipoate A/B protein ligase family VCA1552_01121 PF10437 Bacterial lipoate protein ligase C-terminus VCA1552_01122 PF03466 LysR substrate binding domain VCA1552_01122 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01123 PF07690 Major Facilitator Superfamily VCA1552_01124 PF03441 FAD binding domain of DNA photolyase VCA1552_01124 PF00875 DNA photolyase VCA1552_01126 PF00893 Small Multidrug Resistance protein VCA1552_01127 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01127 PF00672 HAMP domain VCA1552_01130 PF01627 Hpt domain VCA1552_01130 PF07194 P2 response regulator binding domain VCA1552_01130 PF01584 CheW-like domain VCA1552_01130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01130 PF02895 Signal transducing histidine kinase, homodimeric domain VCA1552_01131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01131 PF01627 Hpt domain VCA1552_01131 PF00072 Response regulator receiver domain VCA1552_01131 PF01584 CheW-like domain VCA1552_01132 PF03705 CheR methyltransferase, all-alpha domain VCA1552_01132 PF01739 CheR methyltransferase, SAM binding domain VCA1552_01134 PF01339 CheB methylesterase VCA1552_01134 PF00072 Response regulator receiver domain VCA1552_01135 PF01584 CheW-like domain VCA1552_01136 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01136 PF17202 Single cache domain 3 VCA1552_01136 PF00672 HAMP domain VCA1552_01137 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01137 PF00672 HAMP domain VCA1552_01137 PF12729 Four helix bundle sensory module for signal transduction VCA1552_01138 PF08447 PAS fold VCA1552_01138 PF13426 PAS domain VCA1552_01138 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01139 PF00270 DEAD/DEAH box helicase VCA1552_01139 PF00271 Helicase conserved C-terminal domain VCA1552_01141 PF02321 Outer membrane efflux protein VCA1552_01142 PF00529 HlyD membrane-fusion protein of T1SS VCA1552_01142 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCA1552_01143 PF07690 Major Facilitator Superfamily VCA1552_01144 PF02743 Cache domain VCA1552_01144 PF00672 HAMP domain VCA1552_01144 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01145 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VCA1552_01146 PF05638 Type VI secretion system effector, Hcp VCA1552_01147 PF04717 Type VI secretion system, phage-baseplate injector VCA1552_01147 PF16671 Actin cross-linking domain VCA1552_01152 PF01810 LysE type translocator VCA1552_01153 PF01235 Sodium:alanine symporter family VCA1552_01157 PF13416 Bacterial extracellular solute-binding protein VCA1552_01158 PF13416 Bacterial extracellular solute-binding protein VCA1552_01159 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01160 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01161 PF00005 ABC transporter VCA1552_01161 PF08402 TOBE domain VCA1552_01165 PF01171 PP-loop family VCA1552_01166 PF00582 Universal stress protein family VCA1552_01167 PF00027 Cyclic nucleotide-binding domain VCA1552_01167 PF13545 Crp-like helix-turn-helix domain VCA1552_01170 PF00403 Heavy-metal-associated domain VCA1552_01172 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VCA1552_01172 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCA1552_01175 PF00115 Cytochrome C and Quinol oxidase polypeptide I VCA1552_01178 PF00072 Response regulator receiver domain VCA1552_01178 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01178 PF09308 LuxQ, periplasmic VCA1552_01178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01179 PF03412 Peptidase C39 family VCA1552_01179 PF00005 ABC transporter VCA1552_01179 PF00664 ABC transporter transmembrane region VCA1552_01181 PF03412 Peptidase C39 family VCA1552_01181 PF00664 ABC transporter transmembrane region VCA1552_01181 PF00005 ABC transporter VCA1552_01183 PF02794 RTX toxin acyltransferase family VCA1552_01184 PF16671 Actin cross-linking domain VCA1552_01184 PF11647 Membrane Localization Domain VCA1552_01184 PF07634 RtxA repeat VCA1552_01184 PF11713 Peptidase C80 family VCA1552_01184 PF12146 Serine aminopeptidase, S33 VCA1552_01188 PF01381 Helix-turn-helix VCA1552_01189 PF01376 Heat-labile enterotoxin beta chain VCA1552_01190 PF01375 Heat-labile enterotoxin alpha chain VCA1552_01191 PF05707 Zonular occludens toxin (Zot) VCA1552_01192 PF10734 Protein of unknown function (DUF2523) VCA1552_01193 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII VCA1552_01198 PF01381 Helix-turn-helix VCA1552_01211 PF01527 Transposase VCA1552_01212 PF00665 Integrase core domain VCA1552_01215 PF06303 MatP N-terminal domain VCA1552_01215 PF17414 MatP C-terminal ribbon-helix-helix domain VCA1552_01216 PF13654 AAA domain VCA1552_01216 PF05362 Lon protease (S16) C-terminal proteolytic domain VCA1552_01217 PF07977 FabA-like domain VCA1552_01218 PF04957 Ribosome modulation factor VCA1552_01222 PF01170 Putative RNA methylase family UPF0020 VCA1552_01222 PF02926 THUMP domain VCA1552_01222 PF10672 S-adenosylmethionine-dependent methyltransferase VCA1552_01224 PF07126 Cell-division protein ZapC VCA1552_01225 PF01180 Dihydroorotate dehydrogenase VCA1552_01226 PF05088 Bacterial NAD-glutamate dehydrogenase VCA1552_01227 PF01433 Peptidase family M1 domain VCA1552_01227 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VCA1552_01227 PF11940 Domain of unknown function (DUF3458) Ig-like fold VCA1552_01235 PF13186 Iron-sulfur cluster-binding domain VCA1552_01235 PF04055 Radical SAM superfamily VCA1552_01251 PF04860 Phage portal protein VCA1552_01270 PF01712 Deoxynucleoside kinase VCA1552_01285 PF13408 Recombinase zinc beta ribbon domain VCA1552_01285 PF00239 Resolvase, N terminal domain VCA1552_01285 PF07508 Recombinase VCA1552_01286 PF01433 Peptidase family M1 domain VCA1552_01286 PF11940 Domain of unknown function (DUF3458) Ig-like fold VCA1552_01286 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VCA1552_01288 PF11818 C-terminal domain of tail specific protease (DUF3340) VCA1552_01288 PF00595 PDZ domain VCA1552_01288 PF03572 Peptidase family S41 VCA1552_01288 PF17804 Tail specific protease N-terminal domain VCA1552_01289 PF04352 ProQ/FINO family VCA1552_01289 PF17516 ProQ C-terminal domain VCA1552_01290 PF13185 GAF domain VCA1552_01291 PF00664 ABC transporter transmembrane region VCA1552_01291 PF00005 ABC transporter VCA1552_01292 PF04403 Paraquat-inducible protein A VCA1552_01293 PF02470 MlaD protein VCA1552_01294 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VCA1552_01294 PF01189 16S rRNA methyltransferase RsmB/F VCA1552_01294 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VCA1552_01296 PF17783 CvfB-like winged helix domain VCA1552_01296 PF13509 S1 domain VCA1552_01299 PF00793 DAHP synthetase I family VCA1552_01300 PF04461 Protein of unknown function (DUF520) VCA1552_01301 PF02146 Sir2 family VCA1552_01304 PF13247 4Fe-4S dicluster domain VCA1552_01305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VCA1552_01305 PF00384 Molybdopterin oxidoreductase VCA1552_01305 PF01568 Molydopterin dinucleotide binding domain VCA1552_01307 PF02613 Nitrate reductase delta subunit VCA1552_01311 PF02634 FdhD/NarQ family VCA1552_01312 PF00005 ABC transporter VCA1552_01312 PF12848 ABC transporter VCA1552_01313 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01313 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01313 PF00989 PAS fold VCA1552_01314 PF02954 Bacterial regulatory protein, Fis family VCA1552_01314 PF00072 Response regulator receiver domain VCA1552_01314 PF00158 Sigma-54 interaction domain VCA1552_01315 PF12849 PBP superfamily domain VCA1552_01316 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01317 PF08402 TOBE domain VCA1552_01317 PF00005 ABC transporter VCA1552_01318 PF12804 MobA-like NTP transferase domain VCA1552_01319 PF03453 MoeA N-terminal region (domain I and II) VCA1552_01319 PF00994 Probable molybdopterin binding domain VCA1552_01319 PF03454 MoeA C-terminal region (domain IV) VCA1552_01323 PF00480 ROK family VCA1552_01326 PF00672 HAMP domain VCA1552_01326 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01326 PF02743 Cache domain VCA1552_01327 PF00877 NlpC/P60 family VCA1552_01331 PF01554 MatE VCA1552_01333 PF14743 DNA ligase OB-like domain VCA1552_01333 PF01068 ATP dependent DNA ligase domain VCA1552_01335 PF03544 Gram-negative bacterial TonB protein C-terminal VCA1552_01336 PF02472 Biopolymer transport protein ExbD/TolR VCA1552_01337 PF01618 MotA/TolQ/ExbB proton channel family VCA1552_01338 PF01618 MotA/TolQ/ExbB proton channel family VCA1552_01340 PF13416 Bacterial extracellular solute-binding protein VCA1552_01341 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01342 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01343 PF17912 MalK OB fold domain VCA1552_01343 PF00005 ABC transporter VCA1552_01344 PF08220 DeoR-like helix-turn-helix domain VCA1552_01344 PF00455 DeoR C terminal sensor domain VCA1552_01345 PF03009 Glycerophosphoryl diester phosphodiesterase family VCA1552_01346 PF04074 YhcH/YjgK/YiaL VCA1552_01347 PF01042 Endoribonuclease L-PSP VCA1552_01348 PF00356 Bacterial regulatory proteins, lacI family VCA1552_01349 PF00232 Glycosyl hydrolase family 1 VCA1552_01350 PF00141 Peroxidase VCA1552_01351 PF03466 LysR substrate binding domain VCA1552_01351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01353 PF00529 HlyD membrane-fusion protein of T1SS VCA1552_01355 PF00005 ABC transporter VCA1552_01355 PF12704 MacB-like periplasmic core domain VCA1552_01355 PF02687 FtsX-like permease family VCA1552_01356 PF00005 ABC transporter VCA1552_01356 PF02687 FtsX-like permease family VCA1552_01356 PF12704 MacB-like periplasmic core domain VCA1552_01357 PF12704 MacB-like periplasmic core domain VCA1552_01357 PF02687 FtsX-like permease family VCA1552_01357 PF00005 ABC transporter VCA1552_01358 PF02322 Cytochrome bd terminal oxidase subunit II VCA1552_01359 PF01654 Cytochrome bd terminal oxidase subunit I VCA1552_01361 PF00206 Lyase VCA1552_01361 PF10415 Fumarase C C-terminus VCA1552_01367 PF13193 AMP-binding enzyme C-terminal domain VCA1552_01367 PF00501 AMP-binding enzyme VCA1552_01368 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01368 PF03466 LysR substrate binding domain VCA1552_01369 PF00361 Proton-conducting membrane transporter VCA1552_01369 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VCA1552_01370 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) VCA1552_01371 PF00080 Copper/zinc superoxide dismutase (SODC) VCA1552_01373 PF00199 Catalase VCA1552_01373 PF06628 Catalase-related immune-responsive VCA1552_01375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01375 PF03466 LysR substrate binding domain VCA1552_01376 PF03306 Alpha-acetolactate decarboxylase VCA1552_01377 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCA1552_01377 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCA1552_01377 PF00205 Thiamine pyrophosphate enzyme, central domain VCA1552_01379 PF00563 EAL domain VCA1552_01379 PF17154 Gammaproteobacterial periplasmic sensor domain VCA1552_01379 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01379 PF00672 HAMP domain VCA1552_01380 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01381 PF01263 Aldose 1-epimerase VCA1552_01382 PF08544 GHMP kinases C terminal VCA1552_01382 PF10509 Galactokinase galactose-binding signature VCA1552_01382 PF00288 GHMP kinases N terminal domain VCA1552_01383 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VCA1552_01383 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VCA1552_01384 PF07690 Major Facilitator Superfamily VCA1552_01388 PF00072 Response regulator receiver domain VCA1552_01388 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01391 PF00072 Response regulator receiver domain VCA1552_01391 PF01584 CheW-like domain VCA1552_01393 PF00072 Response regulator receiver domain VCA1552_01393 PF12431 Transcriptional regulator VCA1552_01394 PF17203 Single cache domain 3 VCA1552_01394 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01394 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VCA1552_01394 PF00989 PAS fold VCA1552_01397 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCA1552_01401 PF04204 Homoserine O-succinyltransferase VCA1552_01404 PF05971 RNA methyltransferase VCA1552_01405 PF01863 Protein of unknown function DUF45 VCA1552_01407 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01407 PF03466 LysR substrate binding domain VCA1552_01411 PF02321 Outer membrane efflux protein VCA1552_01412 PF05736 OprF membrane domain VCA1552_01412 PF00691 OmpA family VCA1552_01414 PF03435 Saccharopine dehydrogenase NADP binding domain VCA1552_01414 PF16653 Saccharopine dehydrogenase C-terminal domain VCA1552_01415 PF00202 Aminotransferase class-III VCA1552_01416 PF06965 Na+/H+ antiporter 1 VCA1552_01419 PF00005 ABC transporter VCA1552_01420 PF01554 MatE VCA1552_01421 PF11066 Protein of unknown function (DUF2867) VCA1552_01421 PF13460 NAD(P)H-binding VCA1552_01423 PF07690 Major Facilitator Superfamily VCA1552_01424 PF00849 RNA pseudouridylate synthase VCA1552_01424 PF01479 S4 domain VCA1552_01425 PF04851 Type III restriction enzyme, res subunit VCA1552_01425 PF00271 Helicase conserved C-terminal domain VCA1552_01427 PF00486 Transcriptional regulatory protein, C terminal VCA1552_01427 PF00072 Response regulator receiver domain VCA1552_01429 PF01386 Ribosomal L25p family VCA1552_01430 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01430 PF01590 GAF domain VCA1552_01430 PF00563 EAL domain VCA1552_01430 PF00360 Phytochrome region VCA1552_01432 PF12729 Four helix bundle sensory module for signal transduction VCA1552_01432 PF00672 HAMP domain VCA1552_01432 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01436 PF12793 Sugar transport-related sRNA regulator N-term VCA1552_01436 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCA1552_01438 PF01752 Collagenase VCA1552_01438 PF04151 Bacterial pre-peptidase C-terminal domain VCA1552_01438 PF08453 Peptidase family M9 N-terminal VCA1552_01440 PF00563 EAL domain VCA1552_01440 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01440 PF03707 Bacterial signalling protein N terminal repeat VCA1552_01441 PF00072 Response regulator receiver domain VCA1552_01441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01441 PF09308 LuxQ, periplasmic VCA1552_01441 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01443 PF01769 Divalent cation transporter VCA1552_01443 PF00571 CBS domain VCA1552_01443 PF03448 MgtE intracellular N domain VCA1552_01446 PF03222 Tryptophan/tyrosine permease family VCA1552_01447 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCA1552_01448 PF00005 ABC transporter VCA1552_01451 PF06945 Protein of unknown function (DUF1289) VCA1552_01453 PF13416 Bacterial extracellular solute-binding protein VCA1552_01454 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01455 PF00005 ABC transporter VCA1552_01456 PF01066 CDP-alcohol phosphatidyltransferase VCA1552_01457 PF00849 RNA pseudouridylate synthase VCA1552_01458 PF00209 Sodium:neurotransmitter symporter family VCA1552_01459 PF13091 PLD-like domain VCA1552_01459 PF13396 Phospholipase_D-nuclease N-terminal VCA1552_01460 PF01053 Cys/Met metabolism PLP-dependent enzyme VCA1552_01461 PF03352 Methyladenine glycosylase VCA1552_01462 PF00873 AcrB/AcrD/AcrF family VCA1552_01463 PF13533 Biotin-lipoyl like VCA1552_01464 PF00529 HlyD membrane-fusion protein of T1SS VCA1552_01464 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCA1552_01467 PF04012 PspA/IM30 family VCA1552_01468 PF02954 Bacterial regulatory protein, Fis family VCA1552_01468 PF00158 Sigma-54 interaction domain VCA1552_01469 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCA1552_01470 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01471 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01471 PF12911 N-terminal TM domain of oligopeptide transport permease C VCA1552_01472 PF00005 ABC transporter VCA1552_01472 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_01473 PF00005 ABC transporter VCA1552_01476 PF02833 DHHA2 domain VCA1552_01476 PF01368 DHH family VCA1552_01480 PF01568 Molydopterin dinucleotide binding domain VCA1552_01480 PF00384 Molybdopterin oxidoreductase VCA1552_01480 PF18364 Molybdopterin oxidoreductase N-terminal domain VCA1552_01481 PF03264 NapC/NirT cytochrome c family, N-terminal region VCA1552_01482 PF06796 Periplasmic nitrate reductase protein NapE VCA1552_01483 PF01226 Formate/nitrite transporter VCA1552_01485 PF01370 NAD dependent epimerase/dehydratase family VCA1552_01486 PF02698 DUF218 domain VCA1552_01488 PF04279 Intracellular septation protein A VCA1552_01489 PF03061 Thioesterase superfamily VCA1552_01490 PF03795 YCII-related domain VCA1552_01492 PF08267 Cobalamin-independent synthase, N-terminal domain VCA1552_01492 PF01717 Cobalamin-independent synthase, Catalytic domain VCA1552_01493 PF03466 LysR substrate binding domain VCA1552_01493 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01496 PF00675 Insulinase (Peptidase family M16) VCA1552_01496 PF05193 Peptidase M16 inactive domain VCA1552_01497 PF03707 Bacterial signalling protein N terminal repeat VCA1552_01497 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01497 PF00563 EAL domain VCA1552_01498 PF04055 Radical SAM superfamily VCA1552_01498 PF11842 Domain of unknown function (DUF3362) VCA1552_01498 PF08497 Radical SAM N-terminal VCA1552_01499 PF01810 LysE type translocator VCA1552_01500 PF01037 Lrp/AsnC ligand binding domain VCA1552_01501 PF04310 MukB N-terminal VCA1552_01501 PF16330 MukB hinge domain VCA1552_01502 PF04288 MukE-like family VCA1552_01503 PF03882 MukF winged-helix domain VCA1552_01503 PF17193 MukF C-terminal domain VCA1552_01503 PF17192 MukF middle domain VCA1552_01505 PF02698 DUF218 domain VCA1552_01506 PF00486 Transcriptional regulatory protein, C terminal VCA1552_01506 PF00072 Response regulator receiver domain VCA1552_01507 PF02613 Nitrate reductase delta subunit VCA1552_01508 PF00356 Bacterial regulatory proteins, lacI family VCA1552_01510 PF04994 TfoX C-terminal domain VCA1552_01510 PF04993 TfoX N-terminal domain VCA1552_01514 PF08323 Starch synthase catalytic domain VCA1552_01514 PF00534 Glycosyl transferases group 1 VCA1552_01515 PF00483 Nucleotidyl transferase VCA1552_01516 PF01751 Toprim domain VCA1552_01516 PF01131 DNA topoisomerase VCA1552_01516 PF08272 Topoisomerase I zinc-ribbon-like VCA1552_01516 PF01396 Topoisomerase DNA binding C4 zinc finger VCA1552_01517 PF10692 Protein of unknown function (DUF2498) VCA1552_01518 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCA1552_01519 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VCA1552_01520 PF04376 Arginine-tRNA-protein transferase, N terminus VCA1552_01520 PF04377 Arginine-tRNA-protein transferase, C terminus VCA1552_01521 PF01176 Translation initiation factor 1A / IF-1 VCA1552_01522 PF12241 Trans-2-enoyl-CoA reductase catalytic region VCA1552_01522 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VCA1552_01522 PF07055 Enoyl reductase FAD binding domain VCA1552_01523 PF09317 Domain of unknown function (DUF1974) VCA1552_01523 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCA1552_01523 PF02770 Acyl-CoA dehydrogenase, middle domain VCA1552_01523 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCA1552_01524 PF16295 Tetracyclin repressor-like, C-terminal domain VCA1552_01524 PF00440 Bacterial regulatory proteins, tetR family VCA1552_01527 PF07383 Protein of unknown function (DUF1496) VCA1552_01528 PF00171 Aldehyde dehydrogenase family VCA1552_01529 PF00440 Bacterial regulatory proteins, tetR family VCA1552_01529 PF08362 YcdC-like protein, C-terminal region VCA1552_01533 PF00924 Mechanosensitive ion channel VCA1552_01533 PF05552 Conserved TM helix VCA1552_01534 PF04403 Paraquat-inducible protein A VCA1552_01535 PF02470 MlaD protein VCA1552_01537 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCA1552_01538 PF00873 AcrB/AcrD/AcrF family VCA1552_01540 PF13356 Arm DNA-binding domain VCA1552_01540 PF00589 Phage integrase family VCA1552_01541 PF13356 Arm DNA-binding domain VCA1552_01541 PF00589 Phage integrase family VCA1552_01542 PF00176 SNF2 family N-terminal domain VCA1552_01542 PF00271 Helicase conserved C-terminal domain VCA1552_01542 PF12419 SNF2 Helicase protein VCA1552_01546 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCA1552_01546 PF11867 Domain of unknown function (DUF3387) VCA1552_01546 PF18766 SWI2/SNF2 ATPase VCA1552_01550 PF02384 N-6 DNA Methylase VCA1552_01554 PF07646 Kelch motif VCA1552_01555 PF01344 Kelch motif VCA1552_01556 PF01418 Helix-turn-helix domain, rpiR family VCA1552_01556 PF01380 SIS domain VCA1552_01557 PF00701 Dihydrodipicolinate synthetase family VCA1552_01558 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCA1552_01559 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCA1552_01560 PF03480 Bacterial extracellular solute-binding protein, family 7 VCA1552_01561 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VCA1552_01562 PF00480 ROK family VCA1552_01563 PF01979 Amidohydrolase family VCA1552_01564 PF13088 BNR repeat-like domain VCA1552_01564 PF09264 Vibrio cholerae sialidase, lectin insertion VCA1552_01566 PF04002 RadC-like JAB domain VCA1552_01569 PF00665 Integrase core domain VCA1552_01570 PF01527 Transposase VCA1552_01579 PF00005 ABC transporter VCA1552_01594 PF03441 FAD binding domain of DNA photolyase VCA1552_01594 PF00875 DNA photolyase VCA1552_01596 PF09905 DNA-binding protein VF530 VCA1552_01597 PF02954 Bacterial regulatory protein, Fis family VCA1552_01597 PF01590 GAF domain VCA1552_01597 PF00158 Sigma-54 interaction domain VCA1552_01598 PF00171 Aldehyde dehydrogenase family VCA1552_01602 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCA1552_01604 PF12833 Helix-turn-helix domain VCA1552_01605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCA1552_01605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCA1552_01605 PF02378 Phosphotransferase system, EIIC VCA1552_01606 PF01238 Phosphomannose isomerase type I VCA1552_01607 PF06610 L-alanine exporter VCA1552_01608 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01608 PF09308 LuxQ, periplasmic VCA1552_01608 PF00072 Response regulator receiver domain VCA1552_01608 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01610 PF02445 Quinolinate synthetase A protein VCA1552_01612 PF00691 OmpA family VCA1552_01613 PF04052 TolB amino-terminal domain VCA1552_01613 PF07676 WD40-like Beta Propeller Repeat VCA1552_01615 PF02472 Biopolymer transport protein ExbD/TolR VCA1552_01616 PF01618 MotA/TolQ/ExbB proton channel family VCA1552_01617 PF03061 Thioesterase superfamily VCA1552_01618 PF08173 Membrane bound YbgT-like protein VCA1552_01619 PF02322 Cytochrome bd terminal oxidase subunit II VCA1552_01620 PF01654 Cytochrome bd terminal oxidase subunit I VCA1552_01622 PF05496 Holliday junction DNA helicase RuvB P-loop domain VCA1552_01622 PF05491 RuvB C-terminal winged helix domain VCA1552_01622 PF17864 RuvB AAA lid domain VCA1552_01623 PF07499 RuvA, C-terminal domain VCA1552_01623 PF01330 RuvA N terminal domain VCA1552_01624 PF02075 Crossover junction endodeoxyribonuclease RuvC VCA1552_01625 PF01406 tRNA synthetases class I (C) catalytic domain VCA1552_01625 PF09190 DALR domain VCA1552_01626 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCA1552_01627 PF00149 Calcineurin-like phosphoesterase VCA1552_01628 PF08668 HDOD domain VCA1552_01628 PF00563 EAL domain VCA1552_01629 PF02810 SEC-C motif VCA1552_01630 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VCA1552_01631 PF13609 Gram-negative porin VCA1552_01632 PF06733 DEAD_2 VCA1552_01632 PF13307 Helicase C-terminal domain VCA1552_01633 PF01925 Sulfite exporter TauE/SafE VCA1552_01634 PF07445 Primosomal replication protein priC VCA1552_01635 PF10689 Protein of unknown function (DUF2496) VCA1552_01636 PF00672 HAMP domain VCA1552_01636 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01637 PF03372 Endonuclease/Exonuclease/phosphatase family VCA1552_01638 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01639 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_01640 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_01641 PF00005 ABC transporter VCA1552_01644 PF01228 Glycine radical VCA1552_01644 PF02901 Pyruvate formate lyase-like VCA1552_01646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01646 PF00672 HAMP domain VCA1552_01646 PF02743 Cache domain VCA1552_01647 PF04055 Radical SAM superfamily VCA1552_01649 PF03887 YfbU domain VCA1552_01650 PF06798 PrkA serine protein kinase C-terminal domain VCA1552_01650 PF08298 PrkA AAA domain VCA1552_01651 PF04285 Protein of unknown function (DUF444) VCA1552_01652 PF04293 SpoVR like protein VCA1552_01653 PF02348 Cytidylyltransferase VCA1552_01654 PF03966 Trm112p-like protein VCA1552_01655 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VCA1552_01656 PF00005 ABC transporter VCA1552_01656 PF00664 ABC transporter transmembrane region VCA1552_01657 PF13567 Domain of unknown function (DUF4131) VCA1552_01657 PF00753 Metallo-beta-lactamase superfamily VCA1552_01657 PF03772 Competence protein VCA1552_01659 PF02687 FtsX-like permease family VCA1552_01659 PF12704 MacB-like periplasmic core domain VCA1552_01660 PF00005 ABC transporter VCA1552_01661 PF12704 MacB-like periplasmic core domain VCA1552_01661 PF02687 FtsX-like permease family VCA1552_01663 PF02559 CarD-like/TRCF domain VCA1552_01663 PF00270 DEAD/DEAH box helicase VCA1552_01663 PF17757 UvrB interaction domain VCA1552_01663 PF00271 Helicase conserved C-terminal domain VCA1552_01663 PF03461 TRCF domain VCA1552_01665 PF07968 Leukocidin/Hemolysin toxin family VCA1552_01665 PF12563 Hemolytic toxin N terminal VCA1552_01665 PF16458 Beta-prism lectin VCA1552_01667 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_01668 PF05728 Uncharacterised protein family (UPF0227) VCA1552_01670 PF13036 Peptidoglycan-synthase activator LpoB VCA1552_01670 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VCA1552_01673 PF01230 HIT domain VCA1552_01674 PF00672 HAMP domain VCA1552_01674 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01676 PF07840 FadR C-terminal domain VCA1552_01676 PF00392 Bacterial regulatory proteins, gntR family VCA1552_01677 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VCA1552_01678 PF02600 Disulfide bond formation protein DsbB VCA1552_01679 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VCA1552_01679 PF17854 FtsK alpha domain VCA1552_01679 PF09397 Ftsk gamma domain VCA1552_01679 PF01580 FtsK/SpoIIIE family VCA1552_01680 PF01037 Lrp/AsnC ligand binding domain VCA1552_01681 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VCA1552_01681 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VCA1552_01683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01683 PF03466 LysR substrate binding domain VCA1552_01685 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VCA1552_01686 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VCA1552_01687 PF18073 Rubredoxin metal binding domain VCA1552_01688 PF06305 Lipopolysaccharide assembly protein A domain VCA1552_01689 PF00216 Bacterial DNA-binding protein VCA1552_01690 PF00575 S1 RNA binding domain VCA1552_01691 PF02224 Cytidylate kinase VCA1552_01693 PF13145 PPIC-type PPIASE domain VCA1552_01694 PF00216 Bacterial DNA-binding protein VCA1552_01695 PF05362 Lon protease (S16) C-terminal proteolytic domain VCA1552_01695 PF02190 ATP-dependent protease La (LON) substrate-binding domain VCA1552_01695 PF00004 ATPase family associated with various cellular activities (AAA) VCA1552_01696 PF07724 AAA domain (Cdc48 subfamily) VCA1552_01696 PF10431 C-terminal, D2-small domain, of ClpB protein VCA1552_01696 PF06689 ClpX C4-type zinc finger VCA1552_01697 PF00574 Clp protease VCA1552_01698 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCA1552_01698 PF05698 Bacterial trigger factor protein (TF) C-terminus VCA1552_01698 PF05697 Bacterial trigger factor protein (TF) VCA1552_01699 PF02743 Cache domain VCA1552_01699 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01699 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01700 PF00158 Sigma-54 interaction domain VCA1552_01700 PF00072 Response regulator receiver domain VCA1552_01700 PF02954 Bacterial regulatory protein, Fis family VCA1552_01701 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCA1552_01702 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCA1552_01703 PF03480 Bacterial extracellular solute-binding protein, family 7 VCA1552_01704 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VCA1552_01707 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01707 PF13188 PAS domain VCA1552_01707 PF00563 EAL domain VCA1552_01707 PF03707 Bacterial signalling protein N terminal repeat VCA1552_01716 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VCA1552_01716 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VCA1552_01717 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VCA1552_01718 PF01494 FAD binding domain VCA1552_01720 PF03466 LysR substrate binding domain VCA1552_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01722 PF18364 Molybdopterin oxidoreductase N-terminal domain VCA1552_01722 PF01568 Molydopterin dinucleotide binding domain VCA1552_01722 PF00384 Molybdopterin oxidoreductase VCA1552_01723 PF03264 NapC/NirT cytochrome c family, N-terminal region VCA1552_01724 PF00704 Glycosyl hydrolases family 18 VCA1552_01725 PF07670 Nucleoside recognition VCA1552_01725 PF07662 Na+ dependent nucleoside transporter C-terminus VCA1552_01725 PF01773 Na+ dependent nucleoside transporter N-terminus VCA1552_01726 PF03466 LysR substrate binding domain VCA1552_01726 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01727 PF13406 Transglycosylase SLT domain VCA1552_01728 PF05166 YcgL domain VCA1552_01729 PF03775 Septum formation inhibitor MinC, C-terminal domain VCA1552_01729 PF05209 Septum formation inhibitor MinC, N-terminal domain VCA1552_01730 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VCA1552_01731 PF03776 Septum formation topological specificity factor MinE VCA1552_01732 PF04170 NlpE N-terminal domain VCA1552_01737 PF07690 Major Facilitator Superfamily VCA1552_01738 PF12729 Four helix bundle sensory module for signal transduction VCA1552_01738 PF00672 HAMP domain VCA1552_01738 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01739 PF07883 Cupin domain VCA1552_01739 PF01381 Helix-turn-helix VCA1552_01740 PF03594 Benzoate membrane transport protein VCA1552_01741 PF13193 AMP-binding enzyme C-terminal domain VCA1552_01741 PF00501 AMP-binding enzyme VCA1552_01742 PF13378 Enolase C-terminal domain-like VCA1552_01743 PF00378 Enoyl-CoA hydratase/isomerase VCA1552_01744 PF12697 Alpha/beta hydrolase family VCA1552_01745 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCA1552_01745 PF16582 Middle domain of thiamine pyrophosphate VCA1552_01745 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCA1552_01746 PF00425 chorismate binding enzyme VCA1552_01747 PF00155 Aminotransferase class I and II VCA1552_01749 PF01966 HD domain VCA1552_01749 PF13286 Phosphohydrolase-associated domain VCA1552_01753 PF01612 3'-5' exonuclease VCA1552_01753 PF00570 HRDC domain VCA1552_01754 PF13193 AMP-binding enzyme C-terminal domain VCA1552_01754 PF00501 AMP-binding enzyme VCA1552_01755 PF00561 alpha/beta hydrolase fold VCA1552_01758 PF00814 Glycoprotease family VCA1552_01759 PF04851 Type III restriction enzyme, res subunit VCA1552_01759 PF13307 Helicase C-terminal domain VCA1552_01761 PF00551 Formyl transferase VCA1552_01761 PF01842 ACT domain VCA1552_01762 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_01762 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCA1552_01763 PF01343 Peptidase family S49 VCA1552_01764 PF17763 Glutaminase/Asparaginase C-terminal domain VCA1552_01764 PF00710 Asparaginase, N-terminal VCA1552_01765 PF07023 Protein of unknown function (DUF1315) VCA1552_01767 PF01641 SelR domain VCA1552_01768 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCA1552_01768 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCA1552_01769 PF01263 Aldose 1-epimerase VCA1552_01771 PF13847 Methyltransferase domain VCA1552_01774 PF00072 Response regulator receiver domain VCA1552_01774 PF01584 CheW-like domain VCA1552_01775 PF00480 ROK family VCA1552_01776 PF00224 Pyruvate kinase, barrel domain VCA1552_01776 PF02887 Pyruvate kinase, alpha/beta domain VCA1552_01777 PF01734 Patatin-like phospholipase VCA1552_01780 PF00209 Sodium:neurotransmitter symporter family VCA1552_01782 PF02378 Phosphotransferase system, EIIC VCA1552_01782 PF00367 phosphotransferase system, EIIB VCA1552_01783 PF01026 TatD related DNase VCA1552_01784 PF09115 DNA polymerase III, delta subunit, C terminal VCA1552_01785 PF02223 Thymidylate kinase VCA1552_01786 PF02618 YceG-like family VCA1552_01787 PF01063 Amino-transferase class IV VCA1552_01788 PF00109 Beta-ketoacyl synthase, N-terminal domain VCA1552_01788 PF02801 Beta-ketoacyl synthase, C-terminal domain VCA1552_01789 PF00550 Phosphopantetheine attachment site VCA1552_01791 PF00698 Acyl transferase domain VCA1552_01792 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VCA1552_01792 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VCA1552_01793 PF02504 Fatty acid synthesis protein VCA1552_01794 PF01783 Ribosomal L32p protein family VCA1552_01795 PF02620 Large ribosomal RNA subunit accumulation protein YceD VCA1552_01796 PF02545 Maf-like protein VCA1552_01797 PF01479 S4 domain VCA1552_01797 PF00849 RNA pseudouridylate synthase VCA1552_01798 PF00575 S1 RNA binding domain VCA1552_01798 PF10150 Ribonuclease E/G family VCA1552_01798 PF12111 Polyribonucleotide phosphorylase C terminal VCA1552_01799 PF00916 Sulfate permease family VCA1552_01799 PF01740 STAS domain VCA1552_01801 PF00465 Iron-containing alcohol dehydrogenase VCA1552_01801 PF00171 Aldehyde dehydrogenase family VCA1552_01802 PF01914 MarC family integral membrane protein VCA1552_01803 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCA1552_01803 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCA1552_01804 PF03553 Na+/H+ antiporter family VCA1552_01806 PF04245 37-kD nucleoid-associated bacterial protein VCA1552_01807 PF07208 Protein of unknown function (DUF1414) VCA1552_01808 PF00884 Sulfatase VCA1552_01808 PF11893 Domain of unknown function (DUF3413) VCA1552_01811 PF00850 Histone deacetylase domain VCA1552_01812 PF01751 Toprim domain VCA1552_01812 PF01131 DNA topoisomerase VCA1552_01813 PF00462 Glutaredoxin VCA1552_01814 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCA1552_01814 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCA1552_01817 PF04333 MlaA lipoprotein VCA1552_01819 PF03918 Cytochrome C biogenesis protein VCA1552_01820 PF08534 Redoxin VCA1552_01821 PF01578 Cytochrome C assembly protein VCA1552_01821 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VCA1552_01822 PF03100 CcmE VCA1552_01823 PF04995 Heme exporter protein D (CcmD) VCA1552_01824 PF01578 Cytochrome C assembly protein VCA1552_01825 PF03379 CcmB protein VCA1552_01826 PF00005 ABC transporter VCA1552_01828 PF01584 CheW-like domain VCA1552_01830 PF13614 AAA domain VCA1552_01831 PF01339 CheB methylesterase VCA1552_01831 PF00072 Response regulator receiver domain VCA1552_01832 PF01584 CheW-like domain VCA1552_01832 PF02895 Signal transducing histidine kinase, homodimeric domain VCA1552_01832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01832 PF01627 Hpt domain VCA1552_01832 PF07194 P2 response regulator binding domain VCA1552_01833 PF04344 Chemotaxis phosphatase, CheZ VCA1552_01834 PF00072 Response regulator receiver domain VCA1552_01835 PF04545 Sigma-70, region 4 VCA1552_01835 PF04539 Sigma-70 region 3 VCA1552_01835 PF04542 Sigma-70 region 2 VCA1552_01836 PF10609 NUBPL iron-transfer P-loop NTPase VCA1552_01837 PF00448 SRP54-type protein, GTPase domain VCA1552_01838 PF00771 FHIPEP family VCA1552_01839 PF00300 Histidine phosphatase superfamily (branch 1) VCA1552_01840 PF00675 Insulinase (Peptidase family M16) VCA1552_01840 PF05193 Peptidase M16 inactive domain VCA1552_01842 PF03485 Arginyl tRNA synthetase N terminal domain VCA1552_01842 PF00750 tRNA synthetases class I (R) VCA1552_01842 PF05746 DALR anticodon binding domain VCA1552_01845 PF07670 Nucleoside recognition VCA1552_01845 PF07664 Ferrous iron transport protein B C terminus VCA1552_01845 PF02421 Ferrous iron transport protein B VCA1552_01846 PF04023 FeoA domain VCA1552_01848 PF02311 AraC-like ligand binding domain VCA1552_01848 PF12833 Helix-turn-helix domain VCA1552_01849 PF01297 Zinc-uptake complex component A periplasmic VCA1552_01850 PF00005 ABC transporter VCA1552_01851 PF00950 ABC 3 transport family VCA1552_01852 PF02629 CoA binding domain VCA1552_01852 PF00549 CoA-ligase VCA1552_01853 PF00549 CoA-ligase VCA1552_01853 PF08442 ATP-grasp domain VCA1552_01854 PF02817 e3 binding domain VCA1552_01854 PF00364 Biotin-requiring enzyme VCA1552_01854 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCA1552_01855 PF16078 2-oxoglutarate dehydrogenase N-terminus VCA1552_01855 PF00676 Dehydrogenase E1 component VCA1552_01855 PF16870 2-oxoglutarate dehydrogenase C-terminal VCA1552_01855 PF02779 Transketolase, pyrimidine binding domain VCA1552_01856 PF13085 2Fe-2S iron-sulfur cluster binding domain VCA1552_01857 PF02910 Fumarate reductase flavoprotein C-term VCA1552_01857 PF00890 FAD binding domain VCA1552_01858 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCA1552_01859 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCA1552_01860 PF00285 Citrate synthase, C-terminal domain VCA1552_01861 PF01784 NIF3 (NGG1p interacting factor 3) VCA1552_01863 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCA1552_01863 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCA1552_01863 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCA1552_01863 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCA1552_01864 PF03925 SeqA protein C-terminal domain VCA1552_01864 PF17206 SeqA protein N-terminal domain VCA1552_01865 PF12697 Alpha/beta hydrolase family VCA1552_01867 PF00258 Flavodoxin VCA1552_01868 PF04172 LrgB-like family VCA1552_01869 PF03788 LrgA family VCA1552_01870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_01870 PF03466 LysR substrate binding domain VCA1552_01872 PF01475 Ferric uptake regulator family VCA1552_01873 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCA1552_01873 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCA1552_01874 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCA1552_01874 PF11890 Domain of unknown function (DUF3410) VCA1552_01874 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCA1552_01875 PF02801 Beta-ketoacyl synthase, C-terminal domain VCA1552_01875 PF00109 Beta-ketoacyl synthase, N-terminal domain VCA1552_01876 PF01266 FAD dependent oxidoreductase VCA1552_01876 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VCA1552_01877 PF03358 NADPH-dependent FMN reductase VCA1552_01878 PF08891 YfcL protein VCA1552_01879 PF04315 Elongation factor P hydroxylase VCA1552_01880 PF03458 UPF0126 domain VCA1552_01881 PF01264 Chorismate synthase VCA1552_01882 PF05175 Methyltransferase small domain VCA1552_01883 PF01713 Smr domain VCA1552_01884 PF01312 FlhB HrpN YscU SpaS Family VCA1552_01885 PF01311 Bacterial export proteins, family 1 VCA1552_01886 PF01313 Bacterial export proteins, family 3 VCA1552_01887 PF00813 FliP family VCA1552_01888 PF04347 Flagellar biosynthesis protein, FliO VCA1552_01889 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCA1552_01890 PF02154 Flagellar motor switch protein FliM VCA1552_01890 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCA1552_01891 PF03748 Flagellar basal body-associated protein FliL VCA1552_01894 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCA1552_01894 PF18269 T3SS EscN ATPase C-terminal domain VCA1552_01895 PF02108 Flagellar assembly protein FliH VCA1552_01896 PF14842 FliG N-terminal domain VCA1552_01896 PF01706 FliG C-terminal domain VCA1552_01896 PF14841 FliG middle domain VCA1552_01897 PF08345 Flagellar M-ring protein C-terminal VCA1552_01897 PF01514 Secretory protein of YscJ/FliF family VCA1552_01898 PF02049 Flagellar hook-basal body complex protein FliE VCA1552_01899 PF00158 Sigma-54 interaction domain VCA1552_01899 PF00072 Response regulator receiver domain VCA1552_01899 PF02954 Bacterial regulatory protein, Fis family VCA1552_01900 PF13426 PAS domain VCA1552_01900 PF08447 PAS fold VCA1552_01900 PF00989 PAS fold VCA1552_01900 PF13493 Domain of unknown function (DUF4118) VCA1552_01900 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_01901 PF02954 Bacterial regulatory protein, Fis family VCA1552_01901 PF00072 Response regulator receiver domain VCA1552_01901 PF00158 Sigma-54 interaction domain VCA1552_01902 PF02561 Flagellar protein FliS VCA1552_01904 PF07196 Flagellin hook IN motif VCA1552_01904 PF07195 Flagellar hook-associated protein 2 C-terminus VCA1552_01904 PF02465 Flagellar hook-associated protein 2 N-terminus VCA1552_01905 PF03646 FlaG protein VCA1552_01906 PF00669 Bacterial flagellin N-terminal helical region VCA1552_01906 PF07196 Flagellin hook IN motif VCA1552_01906 PF00700 Bacterial flagellin C-terminal helical region VCA1552_01907 PF00700 Bacterial flagellin C-terminal helical region VCA1552_01907 PF07196 Flagellin hook IN motif VCA1552_01907 PF00669 Bacterial flagellin N-terminal helical region VCA1552_01908 PF00669 Bacterial flagellin N-terminal helical region VCA1552_01908 PF07196 Flagellin hook IN motif VCA1552_01908 PF00700 Bacterial flagellin C-terminal helical region VCA1552_01909 PF04261 Dyp-type peroxidase family VCA1552_01910 PF11143 Protein of unknown function (DUF2919) VCA1552_01913 PF03960 ArsC family VCA1552_01914 PF07687 Peptidase dimerisation domain VCA1552_01914 PF01546 Peptidase family M20/M25/M40 VCA1552_01915 PF02557 D-alanyl-D-alanine carboxypeptidase VCA1552_01917 PF06804 NlpB/DapX lipoprotein VCA1552_01918 PF00701 Dihydrodipicolinate synthetase family VCA1552_01920 PF00578 AhpC/TSA family VCA1552_01921 PF00672 HAMP domain VCA1552_01921 PF02743 Cache domain VCA1552_01921 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_01922 PF01594 AI-2E family transporter VCA1552_01924 PF13181 Tetratricopeptide repeat VCA1552_01924 PF01435 Peptidase family M48 VCA1552_01925 PF03960 ArsC family VCA1552_01926 PF03358 NADPH-dependent FMN reductase VCA1552_01929 PF00860 Permease family VCA1552_01930 PF04073 Aminoacyl-tRNA editing domain VCA1552_01931 PF02872 5'-nucleotidase, C-terminal domain VCA1552_01931 PF00149 Calcineurin-like phosphoesterase VCA1552_01932 PF00793 DAHP synthetase I family VCA1552_01933 PF13369 Transglutaminase-like superfamily VCA1552_01934 PF04247 Invasion gene expression up-regulator, SirB VCA1552_01935 PF13847 Methyltransferase domain VCA1552_01935 PF17827 PrmC N-terminal domain VCA1552_01936 PF00472 RF-1 domain VCA1552_01936 PF03462 PCRF domain VCA1552_01937 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VCA1552_01937 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VCA1552_01937 PF01488 Shikimate / quinate 5-dehydrogenase VCA1552_01938 PF03550 Outer membrane lipoprotein LolB VCA1552_01939 PF08544 GHMP kinases C terminal VCA1552_01939 PF00288 GHMP kinases N terminal domain VCA1552_01940 PF14572 Phosphoribosyl synthetase-associated domain VCA1552_01940 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VCA1552_01941 PF01195 Peptidyl-tRNA hydrolase VCA1552_01942 PF06071 Protein of unknown function (DUF933) VCA1552_01942 PF01926 50S ribosome-binding GTPase VCA1552_01959 PF00669 Bacterial flagellin N-terminal helical region VCA1552_01959 PF07196 Flagellin hook IN motif VCA1552_01959 PF00700 Bacterial flagellin C-terminal helical region VCA1552_01960 PF00700 Bacterial flagellin C-terminal helical region VCA1552_01960 PF07196 Flagellin hook IN motif VCA1552_01960 PF00669 Bacterial flagellin N-terminal helical region VCA1552_01962 PF07196 Flagellin hook IN motif VCA1552_01962 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCA1552_01963 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VCA1552_01963 PF10135 Rod binding protein VCA1552_01964 PF02119 Flagellar P-ring protein VCA1552_01965 PF02107 Flagellar L-ring protein VCA1552_01966 PF00460 Flagella basal body rod protein VCA1552_01966 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCA1552_01967 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCA1552_01967 PF00460 Flagella basal body rod protein VCA1552_01968 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCA1552_01968 PF00460 Flagella basal body rod protein VCA1552_01968 PF07559 Flagellar basal body protein FlaE VCA1552_01969 PF13860 FlgD Ig-like domain VCA1552_01969 PF13861 FlgD Tudor-like domain VCA1552_01969 PF03963 Flagellar hook capping protein - N-terminal region VCA1552_01970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCA1552_01970 PF00460 Flagella basal body rod protein VCA1552_01971 PF00460 Flagella basal body rod protein VCA1552_01972 PF01739 CheR methyltransferase, SAM binding domain VCA1552_01972 PF03705 CheR methyltransferase, all-alpha domain VCA1552_01973 PF01584 CheW-like domain VCA1552_01973 PF00072 Response regulator receiver domain VCA1552_01980 PF00668 Condensation domain VCA1552_01980 PF00550 Phosphopantetheine attachment site VCA1552_01980 PF08242 Methyltransferase domain VCA1552_01980 PF00501 AMP-binding enzyme VCA1552_01981 PF04954 Siderophore-interacting protein VCA1552_01981 PF08021 Siderophore-interacting FAD-binding domain VCA1552_01982 PF07715 TonB-dependent Receptor Plug Domain VCA1552_01984 PF01389 OmpA-like transmembrane domain VCA1552_01984 PF00691 OmpA family VCA1552_01985 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCA1552_01986 PF00403 Heavy-metal-associated domain VCA1552_01988 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VCA1552_01988 PF00728 Glycosyl hydrolase family 20, catalytic domain VCA1552_01988 PF02838 Glycosyl hydrolase family 20, domain 2 VCA1552_01988 PF03173 Putative carbohydrate binding domain VCA1552_01989 PF01963 TraB family VCA1552_01992 PF01713 Smr domain VCA1552_01993 PF01479 S4 domain VCA1552_01993 PF00849 RNA pseudouridylate synthase VCA1552_01994 PF08448 PAS fold VCA1552_01994 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_01997 PF00586 AIR synthase related protein, N-terminal domain VCA1552_01997 PF02769 AIR synthase related protein, C-terminal domain VCA1552_01998 PF00551 Formyl transferase VCA1552_01999 PF13230 Glutamine amidotransferases class-II VCA1552_02000 PF13580 SIS domain VCA1552_02001 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCA1552_02001 PF09317 Domain of unknown function (DUF1974) VCA1552_02001 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCA1552_02001 PF02770 Acyl-CoA dehydrogenase, middle domain VCA1552_02003 PF00929 Exonuclease VCA1552_02004 PF00075 RNase H VCA1552_02005 PF08241 Methyltransferase domain VCA1552_02006 PF00753 Metallo-beta-lactamase superfamily VCA1552_02006 PF16123 Hydroxyacylglutathione hydrolase C-terminus VCA1552_02007 PF01476 LysM domain VCA1552_02007 PF01464 Transglycosylase SLT domain VCA1552_02008 PF03372 Endonuclease/Exonuclease/phosphatase family VCA1552_02009 PF00543 Nitrogen regulatory protein P-II VCA1552_02010 PF05870 Phenolic acid decarboxylase (PAD) VCA1552_02011 PF00034 Cytochrome c VCA1552_02012 PF01171 PP-loop family VCA1552_02012 PF11734 TilS substrate C-terminal domain VCA1552_02012 PF09179 TilS substrate binding domain VCA1552_02013 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VCA1552_02014 PF01336 OB-fold nucleic acid binding domain VCA1552_02014 PF14579 Helix-hairpin-helix motif VCA1552_02014 PF02811 PHP domain VCA1552_02014 PF07733 Bacterial DNA polymerase III alpha NTPase domain VCA1552_02014 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VCA1552_02015 PF01351 Ribonuclease HII VCA1552_02016 PF02684 Lipid-A-disaccharide synthetase VCA1552_02017 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_02017 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VCA1552_02018 PF07977 FabA-like domain VCA1552_02019 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VCA1552_02019 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_02020 PF03938 Outer membrane protein (OmpH-like) VCA1552_02021 PF07244 Surface antigen variable number repeat VCA1552_02021 PF01103 Surface antigen VCA1552_02022 PF17820 PDZ domain VCA1552_02022 PF02163 Peptidase family M50 VCA1552_02023 PF13288 DXP reductoisomerase C-terminal domain VCA1552_02023 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VCA1552_02023 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VCA1552_02025 PF01255 Putative undecaprenyl diphosphate synthase VCA1552_02026 PF01765 Ribosome recycling factor VCA1552_02027 PF00696 Amino acid kinase family VCA1552_02028 PF00889 Elongation factor TS VCA1552_02029 PF00318 Ribosomal protein S2 VCA1552_02031 PF00557 Metallopeptidase family M24 VCA1552_02032 PF01966 HD domain VCA1552_02032 PF01909 Nucleotidyltransferase domain VCA1552_02032 PF08335 GlnD PII-uridylyltransferase VCA1552_02033 PF11944 Protein of unknown function (DUF3461) VCA1552_02034 PF04608 Phosphatidylglycerophosphatase A VCA1552_02035 PF00586 AIR synthase related protein, N-terminal domain VCA1552_02035 PF02769 AIR synthase related protein, C-terminal domain VCA1552_02036 PF01029 NusB family VCA1552_02037 PF00885 6,7-dimethyl-8-ribityllumazine synthase VCA1552_02038 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VCA1552_02038 PF00925 GTP cyclohydrolase II VCA1552_02039 PF00677 Lumazine binding domain VCA1552_02040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCA1552_02040 PF01872 RibD C-terminal domain VCA1552_02041 PF03477 ATP cone domain VCA1552_02042 PF00171 Aldehyde dehydrogenase family VCA1552_02043 PF01472 PUA domain VCA1552_02043 PF00696 Amino acid kinase family VCA1552_02044 PF07417 Sigma factor-binding transcriptional regulator Crl VCA1552_02046 PF00156 Phosphoribosyl transferase domain VCA1552_02047 PF00860 Permease family VCA1552_02048 PF01546 Peptidase family M20/M25/M40 VCA1552_02048 PF07687 Peptidase dimerisation domain VCA1552_02049 PF08443 RimK-like ATP-grasp domain VCA1552_02049 PF18030 RimK PreATP-grasp domain VCA1552_02050 PF08443 RimK-like ATP-grasp domain VCA1552_02050 PF18030 RimK PreATP-grasp domain VCA1552_02052 PF00209 Sodium:neurotransmitter symporter family VCA1552_02053 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02053 PF17158 Membrane-associated sensor, integral membrane domain VCA1552_02055 PF00817 impB/mucB/samB family VCA1552_02055 PF11798 IMS family HHH motif VCA1552_02057 PF02424 ApbE family VCA1552_02058 PF00175 Oxidoreductase NAD-binding domain VCA1552_02058 PF00111 2Fe-2S iron-sulfur cluster binding domain VCA1552_02058 PF00970 Oxidoreductase FAD-binding domain VCA1552_02059 PF02508 Rnf-Nqr subunit, membrane protein VCA1552_02060 PF02508 Rnf-Nqr subunit, membrane protein VCA1552_02061 PF04205 FMN-binding domain VCA1552_02062 PF03116 NQR2, RnfD, RnfE family VCA1552_02063 PF11973 NQRA C-terminal domain VCA1552_02063 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VCA1552_02064 PF01722 BolA-like protein VCA1552_02065 PF05175 Methyltransferase small domain VCA1552_02067 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCA1552_02068 PF07690 Major Facilitator Superfamily VCA1552_02070 PF04545 Sigma-70, region 4 VCA1552_02070 PF04542 Sigma-70 region 2 VCA1552_02072 PF03502 Nucleoside-specific channel-forming protein, Tsx VCA1552_02073 PF08546 Ketopantoate reductase PanE/ApbA C terminal VCA1552_02073 PF02558 Ketopantoate reductase PanE/ApbA VCA1552_02074 PF01965 DJ-1/PfpI family VCA1552_02075 PF00266 Aminotransferase class-V VCA1552_02076 PF02657 Fe-S metabolism associated domain VCA1552_02077 PF00899 ThiF family VCA1552_02078 PF03562 MltA specific insert domain VCA1552_02078 PF06725 3D domain VCA1552_02080 PF00583 Acetyltransferase (GNAT) family VCA1552_02080 PF00696 Amino acid kinase family VCA1552_02082 PF13538 UvrD-like helicase C-terminal domain VCA1552_02083 PF13361 UvrD-like helicase C-terminal domain VCA1552_02083 PF00580 UvrD/REP helicase N-terminal domain VCA1552_02083 PF12705 PD-(D/E)XK nuclease superfamily VCA1552_02084 PF17946 RecC C-terminal domain VCA1552_02087 PF07130 YebG protein VCA1552_02088 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VCA1552_02088 PF14602 Hexapeptide repeat of succinyl-transferase VCA1552_02090 PF00583 Acetyltransferase (GNAT) family VCA1552_02092 PF08443 RimK-like ATP-grasp domain VCA1552_02092 PF02080 TrkA-C domain VCA1552_02092 PF18030 RimK PreATP-grasp domain VCA1552_02093 PF01544 CorA-like Mg2+ transporter protein VCA1552_02095 PF01588 Putative tRNA binding domain VCA1552_02096 PF00356 Bacterial regulatory proteins, lacI family VCA1552_02097 PF02837 Glycosyl hydrolases family 2, sugar binding domain VCA1552_02097 PF16353 Domain of unknown function(DUF4981) VCA1552_02097 PF00703 Glycosyl hydrolases family 2 VCA1552_02097 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VCA1552_02097 PF02929 Beta galactosidase small chain VCA1552_02099 PF00072 Response regulator receiver domain VCA1552_02100 PF00501 AMP-binding enzyme VCA1552_02101 PF00009 Elongation factor Tu GTP binding domain VCA1552_02101 PF03764 Elongation factor G, domain IV VCA1552_02101 PF00679 Elongation factor G C-terminus VCA1552_02101 PF14492 Elongation Factor G, domain II VCA1552_02101 PF03144 Elongation factor Tu domain 2 VCA1552_02102 PF18073 Rubredoxin metal binding domain VCA1552_02104 PF18429 Domain of unknown function (DUF5609) VCA1552_02106 PF01048 Phosphorylase superfamily VCA1552_02107 PF01676 Metalloenzyme superfamily VCA1552_02108 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VCA1552_02108 PF00591 Glycosyl transferase family, a/b domain VCA1552_02108 PF02885 Glycosyl transferase family, helical bundle domain VCA1552_02109 PF01791 DeoC/LacD family aldolase VCA1552_02110 PF07662 Na+ dependent nucleoside transporter C-terminus VCA1552_02110 PF07670 Nucleoside recognition VCA1552_02110 PF01773 Na+ dependent nucleoside transporter N-terminus VCA1552_02111 PF01026 TatD related DNase VCA1552_02113 PF03883 Peroxide stress protein YaaA VCA1552_02114 PF01235 Sodium:alanine symporter family VCA1552_02117 PF03167 Uracil DNA glycosylase superfamily VCA1552_02118 PF01261 Xylose isomerase-like TIM barrel VCA1552_02119 PF01228 Glycine radical VCA1552_02120 PF14821 Threonine synthase N terminus VCA1552_02120 PF00291 Pyridoxal-phosphate dependent enzyme VCA1552_02121 PF00288 GHMP kinases N terminal domain VCA1552_02121 PF08544 GHMP kinases C terminal VCA1552_02122 PF00696 Amino acid kinase family VCA1552_02122 PF01842 ACT domain VCA1552_02122 PF13840 ACT domain VCA1552_02122 PF03447 Homoserine dehydrogenase, NAD binding domain VCA1552_02122 PF00742 Homoserine dehydrogenase VCA1552_02125 PF03737 Aldolase/RraA VCA1552_02127 PF00486 Transcriptional regulatory protein, C terminal VCA1552_02127 PF00072 Response regulator receiver domain VCA1552_02128 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_02128 PF01627 Hpt domain VCA1552_02128 PF18415 Histidine kinase receptor ArcB trans-membrane domain VCA1552_02128 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02128 PF00072 Response regulator receiver domain VCA1552_02128 PF00989 PAS fold VCA1552_02129 PF00360 Phytochrome region VCA1552_02129 PF00563 EAL domain VCA1552_02129 PF01590 GAF domain VCA1552_02129 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02130 PF04055 Radical SAM superfamily VCA1552_02130 PF16199 Radical_SAM C-terminal domain VCA1552_02131 PF01493 GXGXG motif VCA1552_02131 PF01645 Conserved region in glutamate synthase VCA1552_02131 PF04898 Glutamate synthase central domain VCA1552_02131 PF00310 Glutamine amidotransferases class-II VCA1552_02132 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCA1552_02132 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_02133 PF01645 Conserved region in glutamate synthase VCA1552_02133 PF00310 Glutamine amidotransferases class-II VCA1552_02133 PF04898 Glutamate synthase central domain VCA1552_02133 PF01493 GXGXG motif VCA1552_02134 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_02134 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCA1552_02136 PF01048 Phosphorylase superfamily VCA1552_02138 PF01497 Periplasmic binding protein VCA1552_02139 PF03458 UPF0126 domain VCA1552_02140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_02140 PF03466 LysR substrate binding domain VCA1552_02141 PF01925 Sulfite exporter TauE/SafE VCA1552_02143 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VCA1552_02144 PF00005 ABC transporter VCA1552_02148 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCA1552_02148 PF02142 MGS-like domain VCA1552_02148 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCA1552_02149 PF00117 Glutamine amidotransferase class-I VCA1552_02149 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VCA1552_02150 PF01113 Dihydrodipicolinate reductase, N-terminus VCA1552_02150 PF05173 Dihydrodipicolinate reductase, C-terminus VCA1552_02151 PF00293 NUDIX domain VCA1552_02152 PF07516 SecA Wing and Scaffold domain VCA1552_02152 PF07517 SecA DEAD-like domain VCA1552_02152 PF02810 SEC-C motif VCA1552_02152 PF01043 SecA preprotein cross-linking domain VCA1552_02154 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VCA1552_02155 PF00091 Tubulin/FtsZ family, GTPase domain VCA1552_02155 PF12327 FtsZ family, C-terminal domain VCA1552_02156 PF02491 SHS2 domain inserted in FTSA VCA1552_02157 PF03799 Cell division protein FtsQ VCA1552_02157 PF08478 POTRA domain, FtsQ-type VCA1552_02158 PF01225 Mur ligase family, catalytic domain VCA1552_02158 PF02875 Mur ligase family, glutamate ligase domain VCA1552_02158 PF08245 Mur ligase middle domain VCA1552_02159 PF03033 Glycosyltransferase family 28 N-terminal domain VCA1552_02159 PF04101 Glycosyltransferase family 28 C-terminal domain VCA1552_02160 PF01098 Cell cycle protein VCA1552_02161 PF08245 Mur ligase middle domain VCA1552_02161 PF02875 Mur ligase family, glutamate ligase domain VCA1552_02162 PF00953 Glycosyl transferase family 4 VCA1552_02162 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VCA1552_02163 PF02875 Mur ligase family, glutamate ligase domain VCA1552_02163 PF01225 Mur ligase family, catalytic domain VCA1552_02163 PF08245 Mur ligase middle domain VCA1552_02164 PF02875 Mur ligase family, glutamate ligase domain VCA1552_02164 PF01225 Mur ligase family, catalytic domain VCA1552_02164 PF08245 Mur ligase middle domain VCA1552_02165 PF03717 Penicillin-binding Protein dimerisation domain VCA1552_02165 PF00905 Penicillin binding protein transpeptidase domain VCA1552_02166 PF04999 Cell division protein FtsL VCA1552_02167 PF01795 MraW methylase family VCA1552_02169 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_02169 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCA1552_02170 PF00364 Biotin-requiring enzyme VCA1552_02170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCA1552_02170 PF02817 e3 binding domain VCA1552_02171 PF17831 Pyruvate dehydrogenase E1 component middle domain VCA1552_02171 PF00456 Transketolase, thiamine diphosphate binding domain VCA1552_02172 PF00392 Bacterial regulatory proteins, gntR family VCA1552_02172 PF07729 FCD domain VCA1552_02173 PF02872 5'-nucleotidase, C-terminal domain VCA1552_02173 PF00149 Calcineurin-like phosphoesterase VCA1552_02174 PF17768 RecJ OB domain VCA1552_02174 PF02272 DHHA1 domain VCA1552_02174 PF01368 DHH family VCA1552_02175 PF13098 Thioredoxin-like domain VCA1552_02175 PF10411 Disulfide bond isomerase protein N-terminus VCA1552_02176 PF02899 Phage integrase, N-terminal SAM-like domain VCA1552_02176 PF00589 Phage integrase family VCA1552_02177 PF00258 Flavodoxin VCA1552_02178 PF01510 N-acetylmuramoyl-L-alanine amidase VCA1552_02179 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VCA1552_02179 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VCA1552_02180 PF00114 Pilin (bacterial filament) VCA1552_02180 PF07963 Prokaryotic N-terminal methylation motif VCA1552_02181 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VCA1552_02181 PF00437 Type II/IV secretion system protein VCA1552_02182 PF00482 Type II secretion system (T2SS), protein F VCA1552_02183 PF06750 Bacterial Peptidase A24 N-terminal domain VCA1552_02183 PF01478 Type IV leader peptidase family VCA1552_02184 PF01121 Dephospho-CoA kinase VCA1552_02185 PF07072 Cell division protein VCA1552_02186 PF03884 DNA gyrase inhibitor YacG VCA1552_02187 PF00521 DNA gyrase/topoisomerase IV, subunit A VCA1552_02187 PF03989 DNA gyrase C-terminal domain, beta-propeller VCA1552_02188 PF01751 Toprim domain VCA1552_02188 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02188 PF00986 DNA gyrase B subunit, carboxyl terminus VCA1552_02188 PF00204 DNA gyrase B VCA1552_02189 PF05728 Uncharacterised protein family (UPF0227) VCA1552_02190 PF00149 Calcineurin-like phosphoesterase VCA1552_02191 PF06853 Protein of unknown function (DUF1249) VCA1552_02192 PF00293 NUDIX domain VCA1552_02193 PF02321 Outer membrane efflux protein VCA1552_02194 PF00294 pfkB family carbohydrate kinase VCA1552_02194 PF01467 Cytidylyltransferase-like VCA1552_02195 PF03710 Glutamate-ammonia ligase adenylyltransferase VCA1552_02195 PF08335 GlnD PII-uridylyltransferase VCA1552_02196 PF02743 Cache domain VCA1552_02196 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02196 PF00672 HAMP domain VCA1552_02198 PF01928 CYTH domain VCA1552_02199 PF01865 Protein of unknown function DUF47 VCA1552_02200 PF01384 Phosphate transporter family VCA1552_02201 PF08239 Bacterial SH3 domain VCA1552_02203 PF13401 AAA domain VCA1552_02203 PF01471 Putative peptidoglycan binding domain VCA1552_02204 PF12627 Probable RNA and SrmB- binding site of polymerase A VCA1552_02204 PF01743 Poly A polymerase head domain VCA1552_02204 PF01966 HD domain VCA1552_02205 PF00113 Enolase, C-terminal TIM barrel domain VCA1552_02205 PF03952 Enolase, N-terminal domain VCA1552_02206 PF00117 Glutamine amidotransferase class-I VCA1552_02206 PF06418 CTP synthase N-terminus VCA1552_02207 PF03819 MazG nucleotide pyrophosphohydrolase domain VCA1552_02208 PF02824 TGS domain VCA1552_02208 PF04607 Region found in RelA / SpoT proteins VCA1552_02208 PF13291 ACT domain VCA1552_02209 PF05958 tRNA (Uracil-5-)-methyltransferase VCA1552_02209 PF01938 TRAM domain VCA1552_02210 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCA1552_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02210 PF01627 Hpt domain VCA1552_02210 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_02210 PF00672 HAMP domain VCA1552_02210 PF00072 Response regulator receiver domain VCA1552_02211 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02211 PF00563 EAL domain VCA1552_02214 PF01648 4'-phosphopantetheinyl transferase superfamily VCA1552_02215 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VCA1552_02216 PF02565 Recombination protein O C terminal VCA1552_02216 PF11967 Recombination protein O N terminal VCA1552_02217 PF01926 50S ribosome-binding GTPase VCA1552_02217 PF07650 KH domain VCA1552_02218 PF14622 Ribonuclease-III-like VCA1552_02218 PF00035 Double-stranded RNA binding motif VCA1552_02219 PF10502 Signal peptidase, peptidase S26 VCA1552_02220 PF00009 Elongation factor Tu GTP binding domain VCA1552_02220 PF03144 Elongation factor Tu domain 2 VCA1552_02220 PF06421 GTP-binding protein LepA C-terminus VCA1552_02220 PF00679 Elongation factor G C-terminus VCA1552_02222 PF17188 MucB/RseB C-terminal domain VCA1552_02222 PF03888 MucB/RseB N-terminal domain VCA1552_02223 PF03872 Anti sigma-E protein RseA, N-terminal domain VCA1552_02223 PF03873 Anti sigma-E protein RseA, C-terminal domain VCA1552_02224 PF08281 Sigma-70, region 4 VCA1552_02224 PF04542 Sigma-70 region 2 VCA1552_02225 PF00890 FAD binding domain VCA1552_02225 PF02910 Fumarate reductase flavoprotein C-term VCA1552_02227 PF03937 Flavinator of succinate dehydrogenase VCA1552_02230 PF01494 FAD binding domain VCA1552_02231 PF01494 FAD binding domain VCA1552_02232 PF03695 Uncharacterised protein family (UPF0149) VCA1552_02233 PF05164 Cell division protein ZapA VCA1552_02235 PF01812 5-formyltetrahydrofolate cyclo-ligase family VCA1552_02236 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VCA1552_02237 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCA1552_02237 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCA1552_02237 PF01842 ACT domain VCA1552_02238 PF10369 Small subunit of acetolactate synthase VCA1552_02239 PF00205 Thiamine pyrophosphate enzyme, central domain VCA1552_02239 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCA1552_02239 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCA1552_02240 PF00501 AMP-binding enzyme VCA1552_02241 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_02241 PF03466 LysR substrate binding domain VCA1552_02243 PF01569 PAP2 superfamily VCA1552_02245 PF00682 HMGL-like VCA1552_02245 PF08502 LeuA allosteric (dimerisation) domain VCA1552_02246 PF00180 Isocitrate/isopropylmalate dehydrogenase VCA1552_02247 PF00330 Aconitase family (aconitate hydratase) VCA1552_02248 PF00694 Aconitase C-terminal domain VCA1552_02257 PF00072 Response regulator receiver domain VCA1552_02260 PF03739 Lipopolysaccharide export system permease LptF/LptG VCA1552_02261 PF03739 Lipopolysaccharide export system permease LptF/LptG VCA1552_02262 PF00883 Cytosol aminopeptidase family, catalytic domain VCA1552_02262 PF02789 Cytosol aminopeptidase family, N-terminal domain VCA1552_02263 PF04364 DNA polymerase III chi subunit, HolC VCA1552_02264 PF00133 tRNA synthetases class I (I, L, M and V) VCA1552_02264 PF10458 Valyl tRNA synthetase tRNA binding arm VCA1552_02264 PF08264 Anticodon-binding domain of tRNA VCA1552_02265 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCA1552_02265 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCA1552_02266 PF00849 RNA pseudouridylate synthase VCA1552_02267 PF00271 Helicase conserved C-terminal domain VCA1552_02267 PF12137 RNA polymerase recycling family C-terminal VCA1552_02267 PF00176 SNF2 family N-terminal domain VCA1552_02267 PF18337 RapA N-terminal Tudor like domain VCA1552_02267 PF18339 RapA N-terminal Tudor like domain 1 VCA1552_02268 PF02562 PhoH-like protein VCA1552_02268 PF13638 PIN domain VCA1552_02269 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCA1552_02269 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCA1552_02270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCA1552_02270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCA1552_02271 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VCA1552_02271 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VCA1552_02272 PF01042 Endoribonuclease L-PSP VCA1552_02273 PF01553 Acyltransferase VCA1552_02274 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCA1552_02275 PF01722 BolA-like protein VCA1552_02277 PF05494 MlaC protein VCA1552_02278 PF02470 MlaD protein VCA1552_02279 PF02405 Permease MlaE VCA1552_02280 PF00005 ABC transporter VCA1552_02281 PF01699 Sodium/calcium exchanger protein VCA1552_02282 PF00571 CBS domain VCA1552_02282 PF01380 SIS domain VCA1552_02285 PF03968 OstA-like protein VCA1552_02286 PF00005 ABC transporter VCA1552_02286 PF12399 Branched-chain amino acid ATP-binding cassette transporter VCA1552_02287 PF04963 Sigma-54 factor, core binding domain VCA1552_02287 PF00309 Sigma-54 factor, Activator interacting domain (AID) VCA1552_02287 PF04552 Sigma-54, DNA binding domain VCA1552_02288 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCA1552_02289 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCA1552_02290 PF03668 P-loop ATPase protein family VCA1552_02291 PF00381 PTS HPr component phosphorylation site VCA1552_02292 PF00571 CBS domain VCA1552_02292 PF03448 MgtE intracellular N domain VCA1552_02292 PF01769 Divalent cation transporter VCA1552_02293 PF01523 Putative modulator of DNA gyrase VCA1552_02294 PF04751 Protein of unknown function (DUF615) VCA1552_02295 PF00005 ABC transporter VCA1552_02296 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_02298 PF02441 Flavoprotein VCA1552_02299 PF08245 Mur ligase middle domain VCA1552_02299 PF02875 Mur ligase family, glutamate ligase domain VCA1552_02299 PF01225 Mur ligase family, catalytic domain VCA1552_02300 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VCA1552_02301 PF00719 Inorganic pyrophosphatase VCA1552_02302 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VCA1552_02303 PF04357 TamB, inner membrane protein subunit of TAM complex VCA1552_02304 PF17243 POTRA domain TamA domain 1 VCA1552_02304 PF01103 Surface antigen VCA1552_02304 PF07244 Surface antigen variable number repeat VCA1552_02305 PF01625 Peptide methionine sulfoxide reductase VCA1552_02306 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VCA1552_02307 PF10795 Protein of unknown function (DUF2607) VCA1552_02309 PF00005 ABC transporter VCA1552_02314 PF00009 Elongation factor Tu GTP binding domain VCA1552_02315 PF01507 Phosphoadenosine phosphosulfate reductase family VCA1552_02316 PF14824 Sirohaem biosynthesis protein central VCA1552_02316 PF10414 Sirohaem synthase dimerisation region VCA1552_02316 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCA1552_02317 PF00149 Calcineurin-like phosphoesterase VCA1552_02317 PF02872 5'-nucleotidase, C-terminal domain VCA1552_02319 PF00270 DEAD/DEAH box helicase VCA1552_02319 PF00271 Helicase conserved C-terminal domain VCA1552_02319 PF03880 DbpA RNA binding domain VCA1552_02320 PF13673 Acetyltransferase (GNAT) domain VCA1552_02321 PF00892 EamA-like transporter family VCA1552_02322 PF04225 Opacity-associated protein A LysM-like domain VCA1552_02322 PF08525 Opacity-associated protein A N-terminal motif VCA1552_02323 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCA1552_02323 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCA1552_02325 PF01196 Ribosomal protein L17 VCA1552_02326 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VCA1552_02326 PF01000 RNA polymerase Rpb3/RpoA insert domain VCA1552_02326 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VCA1552_02327 PF00163 Ribosomal protein S4/S9 N-terminal domain VCA1552_02327 PF01479 S4 domain VCA1552_02328 PF00411 Ribosomal protein S11 VCA1552_02329 PF00416 Ribosomal protein S13/S18 VCA1552_02331 PF00444 Ribosomal protein L36 VCA1552_02332 PF00344 SecY translocase VCA1552_02333 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VCA1552_02334 PF00327 Ribosomal protein L30p/L7e VCA1552_02335 PF00333 Ribosomal protein S5, N-terminal domain VCA1552_02335 PF03719 Ribosomal protein S5, C-terminal domain VCA1552_02336 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VCA1552_02337 PF00347 Ribosomal protein L6 VCA1552_02338 PF00410 Ribosomal protein S8 VCA1552_02339 PF00253 Ribosomal protein S14p/S29e VCA1552_02340 PF00281 Ribosomal protein L5 VCA1552_02340 PF00673 ribosomal L5P family C-terminus VCA1552_02341 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VCA1552_02341 PF00467 KOW motif VCA1552_02342 PF00238 Ribosomal protein L14p/L23e VCA1552_02343 PF00366 Ribosomal protein S17 VCA1552_02344 PF00831 Ribosomal L29 protein VCA1552_02345 PF00252 Ribosomal protein L16p/L10e VCA1552_02346 PF00189 Ribosomal protein S3, C-terminal domain VCA1552_02346 PF07650 KH domain VCA1552_02347 PF00237 Ribosomal protein L22p/L17e VCA1552_02348 PF00203 Ribosomal protein S19 VCA1552_02349 PF03947 Ribosomal Proteins L2, C-terminal domain VCA1552_02349 PF00181 Ribosomal Proteins L2, RNA binding domain VCA1552_02350 PF00276 Ribosomal protein L23 VCA1552_02351 PF00573 Ribosomal protein L4/L1 family VCA1552_02352 PF00297 Ribosomal protein L3 VCA1552_02353 PF00338 Ribosomal protein S10p/S20e VCA1552_02354 PF00588 SpoU rRNA Methylase family VCA1552_02354 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCA1552_02355 PF00575 S1 RNA binding domain VCA1552_02355 PF08461 Ribonuclease R winged-helix domain VCA1552_02355 PF08206 Ribonuclease B OB domain VCA1552_02355 PF17876 Cold shock domain VCA1552_02355 PF00773 RNB domain VCA1552_02356 PF11893 Domain of unknown function (DUF3413) VCA1552_02356 PF00884 Sulfatase VCA1552_02357 PF08238 Sel1 repeat VCA1552_02358 PF00709 Adenylosuccinate synthetase VCA1552_02359 PF01112 Asparaginase VCA1552_02360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCA1552_02362 PF02254 TrkA-N domain VCA1552_02362 PF00999 Sodium/hydrogen exchanger family VCA1552_02363 PF02525 Flavodoxin-like fold VCA1552_02364 PF12848 ABC transporter VCA1552_02364 PF00005 ABC transporter VCA1552_02366 PF00561 alpha/beta hydrolase fold VCA1552_02367 PF06794 Uncharacterised protein family (UPF0270) VCA1552_02368 PF00485 Phosphoribulokinase / Uridine kinase family VCA1552_02369 PF13545 Crp-like helix-turn-helix domain VCA1552_02369 PF00027 Cyclic nucleotide-binding domain VCA1552_02371 PF00171 Aldehyde dehydrogenase family VCA1552_02372 PF04958 Arginine N-succinyltransferase beta subunit VCA1552_02373 PF00202 Aminotransferase class-III VCA1552_02374 PF00117 Glutamine amidotransferase class-I VCA1552_02375 PF00919 Uncharacterized protein family UPF0004 VCA1552_02375 PF04055 Radical SAM superfamily VCA1552_02375 PF18693 TRAM domain VCA1552_02378 PF00579 tRNA synthetases class I (W and Y) VCA1552_02379 PF13419 Haloacid dehalogenase-like hydrolase VCA1552_02380 PF00834 Ribulose-phosphate 3 epimerase family VCA1552_02381 PF02086 D12 class N6 adenine-specific DNA methyltransferase VCA1552_02383 PF01761 3-dehydroquinate synthase VCA1552_02384 PF01202 Shikimate kinase VCA1552_02385 PF03958 Bacterial type II/III secretion system short domain VCA1552_02385 PF07660 Secretin and TonB N terminus short domain VCA1552_02385 PF00263 Bacterial type II and III secretion system protein VCA1552_02385 PF11741 AMIN domain VCA1552_02390 PF17092 Penicillin-binding protein OB-like domain VCA1552_02390 PF00905 Penicillin binding protein transpeptidase domain VCA1552_02390 PF00912 Transglycosylase VCA1552_02391 PF03466 LysR substrate binding domain VCA1552_02391 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_02392 PF00462 Glutaredoxin VCA1552_02392 PF08534 Redoxin VCA1552_02393 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCA1552_02393 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_02395 PF00206 Lyase VCA1552_02395 PF14698 Argininosuccinate lyase C-terminal VCA1552_02396 PF00764 Arginosuccinate synthase VCA1552_02397 PF00696 Amino acid kinase family VCA1552_02398 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCA1552_02398 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCA1552_02399 PF01546 Peptidase family M20/M25/M40 VCA1552_02399 PF07687 Peptidase dimerisation domain VCA1552_02400 PF00311 Phosphoenolpyruvate carboxylase VCA1552_02402 PF06426 Serine acetyltransferase, N-terminal VCA1552_02402 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_02403 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VCA1552_02403 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VCA1552_02404 PF02556 Preprotein translocase subunit SecB VCA1552_02405 PF00581 Rhodanese-like domain VCA1552_02406 PF00152 tRNA synthetases class II (D, K and N) VCA1552_02407 PF00890 FAD binding domain VCA1552_02407 PF02910 Fumarate reductase flavoprotein C-term VCA1552_02408 PF13183 4Fe-4S dicluster domain VCA1552_02408 PF13085 2Fe-2S iron-sulfur cluster binding domain VCA1552_02409 PF02300 Fumarate reductase subunit C VCA1552_02410 PF02313 Fumarate reductase subunit D VCA1552_02411 PF09285 Elongation factor P, C-terminal VCA1552_02411 PF08207 Elongation factor P (EF-P) KOW-like domain VCA1552_02411 PF01132 Elongation factor P (EF-P) OB domain VCA1552_02412 PF04055 Radical SAM superfamily VCA1552_02414 PF00118 TCP-1/cpn60 chaperonin family VCA1552_02415 PF00166 Chaperonin 10 Kd subunit VCA1552_02416 PF08220 DeoR-like helix-turn-helix domain VCA1552_02416 PF00455 DeoR C terminal sensor domain VCA1552_02420 PF00121 Triosephosphate isomerase VCA1552_02422 PF03737 Aldolase/RraA VCA1552_02423 PF01040 UbiA prenyltransferase family VCA1552_02424 PF00004 ATPase family associated with various cellular activities (AAA) VCA1552_02424 PF10431 C-terminal, D2-small domain, of ClpB protein VCA1552_02424 PF07724 AAA domain (Cdc48 subfamily) VCA1552_02425 PF00227 Proteasome subunit VCA1552_02426 PF05036 Sporulation related domain VCA1552_02427 PF00356 Bacterial regulatory proteins, lacI family VCA1552_02428 PF00270 DEAD/DEAH box helicase VCA1552_02428 PF00271 Helicase conserved C-terminal domain VCA1552_02428 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VCA1552_02428 PF18074 Primosomal protein N C-terminal domain VCA1552_02428 PF17764 3′ DNA-binding domain (3′BD) VCA1552_02429 PF01197 Ribosomal protein L31 VCA1552_02430 PF03949 Malic enzyme, NAD binding domain VCA1552_02430 PF00390 Malic enzyme, N-terminal domain VCA1552_02431 PF01340 Met Apo-repressor, MetJ VCA1552_02432 PF01053 Cys/Met metabolism PLP-dependent enzyme VCA1552_02433 PF00696 Amino acid kinase family VCA1552_02433 PF00742 Homoserine dehydrogenase VCA1552_02433 PF03447 Homoserine dehydrogenase, NAD binding domain VCA1552_02434 PF02219 Methylenetetrahydrofolate reductase VCA1552_02435 PF06005 Cell division protein ZapB VCA1552_02436 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VCA1552_02437 PF00365 Phosphofructokinase VCA1552_02438 PF16916 Dimerisation domain of Zinc Transporter VCA1552_02438 PF01545 Cation efflux family VCA1552_02440 PF00072 Response regulator receiver domain VCA1552_02440 PF00486 Transcriptional regulatory protein, C terminal VCA1552_02441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02441 PF00672 HAMP domain VCA1552_02441 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_02441 PF16527 Two-component sensor protein CpxA, periplasmic domain VCA1552_02442 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCA1552_02442 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCA1552_02443 PF00588 SpoU rRNA Methylase family VCA1552_02444 PF04186 FxsA cytoplasmic membrane protein VCA1552_02445 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02445 PF17158 Membrane-associated sensor, integral membrane domain VCA1552_02446 PF00206 Lyase VCA1552_02446 PF10415 Fumarase C C-terminus VCA1552_02447 PF03605 Anaerobic c4-dicarboxylate membrane transporter VCA1552_02449 PF17967 Pullulanase N2 domain VCA1552_02449 PF18494 Pullulanase Ins domain VCA1552_02449 PF03714 Bacterial pullanase-associated domain VCA1552_02449 PF11852 Domain of unknown function (DUF3372) VCA1552_02449 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCA1552_02450 PF02683 Cytochrome C biogenesis protein transmembrane region VCA1552_02450 PF11412 Disulphide bond corrector protein DsbC VCA1552_02451 PF00196 Bacterial regulatory proteins, luxR family VCA1552_02451 PF00072 Response regulator receiver domain VCA1552_02452 PF03471 Transporter associated domain VCA1552_02452 PF00999 Sodium/hydrogen exchanger family VCA1552_02452 PF02080 TrkA-C domain VCA1552_02454 PF00474 Sodium:solute symporter family VCA1552_02455 PF02592 Putative vitamin uptake transporter VCA1552_02456 PF00625 Guanylate kinase VCA1552_02457 PF01192 RNA polymerase Rpb6 VCA1552_02458 PF13291 ACT domain VCA1552_02458 PF04607 Region found in RelA / SpoT proteins VCA1552_02458 PF02824 TGS domain VCA1552_02459 PF17191 RecG wedge domain VCA1552_02459 PF00271 Helicase conserved C-terminal domain VCA1552_02459 PF00270 DEAD/DEAH box helicase VCA1552_02460 PF00860 Permease family VCA1552_02461 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02461 PF00672 HAMP domain VCA1552_02461 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_02462 PF00072 Response regulator receiver domain VCA1552_02462 PF00486 Transcriptional regulatory protein, C terminal VCA1552_02463 PF03449 Transcription elongation factor, N-terminal VCA1552_02463 PF01272 Transcription elongation factor, GreA/GreB, C-term VCA1552_02464 PF17674 HHH domain VCA1552_02464 PF16921 Tex protein YqgF-like domain VCA1552_02464 PF00575 S1 RNA binding domain VCA1552_02464 PF09371 Tex-like protein N-terminal domain VCA1552_02466 PF00561 alpha/beta hydrolase fold VCA1552_02467 PF00156 Phosphoribosyl transferase domain VCA1552_02468 PF01106 NifU-like domain VCA1552_02468 PF01521 Iron-sulphur cluster biosynthesis VCA1552_02469 PF00293 NUDIX domain VCA1552_02470 PF00459 Inositol monophosphatase family VCA1552_02471 PF01203 Type II secretion system (T2SS), protein N VCA1552_02472 PF04612 Type II secretion system (T2SS), protein M VCA1552_02473 PF05134 Type II secretion system (T2SS), protein L VCA1552_02473 PF12693 GspL periplasmic domain VCA1552_02474 PF03934 Type II secretion system (T2SS), protein K VCA1552_02475 PF07963 Prokaryotic N-terminal methylation motif VCA1552_02475 PF11612 Type II secretion system (T2SS), protein J VCA1552_02476 PF07963 Prokaryotic N-terminal methylation motif VCA1552_02476 PF02501 Type II secretion system (T2SS), protein I VCA1552_02477 PF12019 Type II transport protein GspH VCA1552_02478 PF08334 Type II secretion system (T2SS), protein G VCA1552_02478 PF07963 Prokaryotic N-terminal methylation motif VCA1552_02479 PF00482 Type II secretion system (T2SS), protein F VCA1552_02480 PF00437 Type II/IV secretion system protein VCA1552_02481 PF00263 Bacterial type II and III secretion system protein VCA1552_02481 PF03958 Bacterial type II/III secretion system short domain VCA1552_02482 PF11356 Type II secretion system protein C VCA1552_02483 PF01479 S4 domain VCA1552_02484 PF01430 Hsp33 protein VCA1552_02485 PF01293 Phosphoenolpyruvate carboxykinase VCA1552_02487 PF09500 Putative thioesterase (yiiD_Cterm) VCA1552_02487 PF00583 Acetyltransferase (GNAT) family VCA1552_02488 PF02580 D-Tyr-tRNA(Tyr) deacylase VCA1552_02489 PF03631 Virulence factor BrkB VCA1552_02493 PF00120 Glutamine synthetase, catalytic domain VCA1552_02493 PF03951 Glutamine synthetase, beta-Grasp domain VCA1552_02495 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_02495 PF00989 PAS fold VCA1552_02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02496 PF00158 Sigma-54 interaction domain VCA1552_02496 PF00072 Response regulator receiver domain VCA1552_02496 PF02954 Bacterial regulatory protein, Fis family VCA1552_02497 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02497 PF00563 EAL domain VCA1552_02497 PF13188 PAS domain VCA1552_02497 PF03707 Bacterial signalling protein N terminal repeat VCA1552_02498 PF00962 Adenosine/AMP deaminase VCA1552_02512 PF01177 Asp/Glu/Hydantoin racemase VCA1552_02513 PF00082 Subtilase family VCA1552_02513 PF04151 Bacterial pre-peptidase C-terminal domain VCA1552_02513 PF05922 Peptidase inhibitor I9 VCA1552_02514 PF00593 TonB dependent receptor VCA1552_02514 PF07715 TonB-dependent Receptor Plug Domain VCA1552_02516 PF05958 tRNA (Uracil-5-)-methyltransferase VCA1552_02518 PF00440 Bacterial regulatory proteins, tetR family VCA1552_02519 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCA1552_02519 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_02520 PF04545 Sigma-70, region 4 VCA1552_02520 PF04542 Sigma-70 region 2 VCA1552_02520 PF00140 Sigma-70 factor, region 1.2 VCA1552_02521 PF18075 FtsX extracellular domain VCA1552_02522 PF00005 ABC transporter VCA1552_02523 PF02881 SRP54-type protein, helical bundle domain VCA1552_02523 PF00448 SRP54-type protein, GTPase domain VCA1552_02529 PF00210 Ferritin-like domain VCA1552_02530 PF08668 HDOD domain VCA1552_02530 PF00563 EAL domain VCA1552_02531 PF01810 LysE type translocator VCA1552_02532 PF12146 Serine aminopeptidase, S33 VCA1552_02536 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02536 PF08495 FIST N domain VCA1552_02536 PF00563 EAL domain VCA1552_02536 PF10442 FIST C domain VCA1552_02537 PF13419 Haloacid dehalogenase-like hydrolase VCA1552_02538 PF02899 Phage integrase, N-terminal SAM-like domain VCA1552_02538 PF00589 Phage integrase family VCA1552_02539 PF04340 Protein of unknown function, DUF484 VCA1552_02540 PF01678 Diaminopimelate epimerase VCA1552_02541 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VCA1552_02541 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VCA1552_02542 PF01491 Frataxin-like domain VCA1552_02543 PF01295 Adenylate cyclase, class-I VCA1552_02543 PF12633 Adenylate cyclase NT domain VCA1552_02544 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VCA1552_02544 PF03900 Porphobilinogen deaminase, C-terminal domain VCA1552_02545 PF02602 Uroporphyrinogen-III synthase HemD VCA1552_02546 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VCA1552_02547 PF07219 HemY protein N-terminus VCA1552_02548 PF06969 HemN C-terminal domain VCA1552_02548 PF04055 Radical SAM superfamily VCA1552_02549 PF10675 Protein of unknown function (DUF2489) VCA1552_02550 PF04220 Der GTPase activator (YihI) VCA1552_02552 PF00034 Cytochrome c VCA1552_02553 PF01926 50S ribosome-binding GTPase VCA1552_02555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCA1552_02555 PF01367 5'-3' exonuclease, C-terminal SAM fold VCA1552_02555 PF00476 DNA polymerase family A VCA1552_02555 PF01612 3'-5' exonuclease VCA1552_02558 PF00490 Delta-aminolevulinic acid dehydratase VCA1552_02559 PF01026 TatD related DNase VCA1552_02560 PF00581 Rhodanese-like domain VCA1552_02561 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VCA1552_02561 PF01694 Rhomboid family VCA1552_02562 PF02203 Tar ligand binding domain homologue VCA1552_02562 PF00672 HAMP domain VCA1552_02562 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02563 PF03748 Flagellar basal body-associated protein FliL VCA1552_02564 PF04345 Chorismate lyase VCA1552_02565 PF01040 UbiA prenyltransferase family VCA1552_02566 PF01553 Acyltransferase VCA1552_02567 PF01726 LexA DNA binding domain VCA1552_02567 PF00717 Peptidase S24-like VCA1552_02569 PF01554 MatE VCA1552_02570 PF00034 Cytochrome c VCA1552_02570 PF03150 Di-haem cytochrome c peroxidase VCA1552_02571 PF00902 Sec-independent protein translocase protein (TatC) VCA1552_02572 PF02416 mttA/Hcf106 family VCA1552_02573 PF02416 mttA/Hcf106 family VCA1552_02574 PF03109 ABC1 family VCA1552_02575 PF02036 SCP-2 sterol transfer family VCA1552_02576 PF01209 ubiE/COQ5 methyltransferase family VCA1552_02577 PF02646 RmuC family VCA1552_02580 PF10625 Universal stress protein B (UspB) VCA1552_02581 PF00210 Ferritin-like domain VCA1552_02582 PF00582 Universal stress protein family VCA1552_02583 PF00892 EamA-like transporter family VCA1552_02585 PF04445 Putative SAM-dependent methyltransferase VCA1552_02586 PF08448 PAS fold VCA1552_02586 PF00563 EAL domain VCA1552_02586 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02587 PF01037 Lrp/AsnC ligand binding domain VCA1552_02589 PF07690 Major Facilitator Superfamily VCA1552_02590 PF03466 LysR substrate binding domain VCA1552_02590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_02591 PF00557 Metallopeptidase family M24 VCA1552_02591 PF01321 Creatinase/Prolidase N-terminal domain VCA1552_02591 PF01321 Creatinase/Prolidase N-terminal domain VCA1552_02591 PF00557 Metallopeptidase family M24 VCA1552_02592 PF04055 Radical SAM superfamily VCA1552_02592 PF06968 Biotin and Thiamin Synthesis associated domain VCA1552_02593 PF05690 Thiazole biosynthesis protein ThiG VCA1552_02594 PF02597 ThiS family VCA1552_02595 PF00899 ThiF family VCA1552_02596 PF02581 Thiamine monophosphate synthase VCA1552_02597 PF13667 ThiC-associated domain VCA1552_02597 PF01964 Radical SAM ThiC family VCA1552_02599 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VCA1552_02607 PF00175 Oxidoreductase NAD-binding domain VCA1552_02608 PF00970 Oxidoreductase FAD-binding domain VCA1552_02608 PF00175 Oxidoreductase NAD-binding domain VCA1552_02608 PF00111 2Fe-2S iron-sulfur cluster binding domain VCA1552_02609 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VCA1552_02611 PF07498 Rho termination factor, N-terminal domain VCA1552_02611 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCA1552_02611 PF07497 Rho termination factor, RNA-binding domain VCA1552_02612 PF00085 Thioredoxin VCA1552_02613 PF00270 DEAD/DEAH box helicase VCA1552_02613 PF00271 Helicase conserved C-terminal domain VCA1552_02614 PF02541 Ppx/GppA phosphatase family VCA1552_02615 PF09456 RcsC Alpha-Beta-Loop (ABL) VCA1552_02615 PF00072 Response regulator receiver domain VCA1552_02615 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02616 PF12832 MFS_1 like family VCA1552_02619 PF00501 AMP-binding enzyme VCA1552_02619 PF13193 AMP-binding enzyme C-terminal domain VCA1552_02619 PF16177 Acetyl-coenzyme A synthetase N-terminus VCA1552_02620 PF01220 Dehydroquinase class II VCA1552_02621 PF00364 Biotin-requiring enzyme VCA1552_02622 PF02785 Biotin carboxylase C-terminal domain VCA1552_02622 PF00289 Biotin carboxylase, N-terminal domain VCA1552_02622 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCA1552_02624 PF01207 Dihydrouridine synthase (Dus) VCA1552_02625 PF02954 Bacterial regulatory protein, Fis family VCA1552_02626 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCA1552_02626 PF00356 Bacterial regulatory proteins, lacI family VCA1552_02627 PF00920 Dehydratase family VCA1552_02628 PF01202 Shikimate kinase VCA1552_02629 PF02447 GntP family permease VCA1552_02630 PF01081 KDPG and KHG aldolase VCA1552_02631 PF00593 TonB dependent receptor VCA1552_02631 PF07715 TonB-dependent Receptor Plug Domain VCA1552_02634 PF17200 Single Cache domain 2 VCA1552_02634 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02634 PF00672 HAMP domain VCA1552_02635 PF01276 Orn/Lys/Arg decarboxylase, major domain VCA1552_02635 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCA1552_02635 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCA1552_02636 PF13520 Amino acid permease VCA1552_02639 PF13411 MerR HTH family regulatory protein VCA1552_02640 PF02142 MGS-like domain VCA1552_02640 PF01808 AICARFT/IMPCHase bienzyme VCA1552_02641 PF02844 Phosphoribosylglycinamide synthetase, N domain VCA1552_02641 PF02843 Phosphoribosylglycinamide synthetase, C domain VCA1552_02641 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VCA1552_02643 PF00216 Bacterial DNA-binding protein VCA1552_02644 PF01595 Cyclin M transmembrane N-terminal domain VCA1552_02644 PF00571 CBS domain VCA1552_02645 PF00480 ROK family VCA1552_02646 PF01238 Phosphomannose isomerase type I VCA1552_02647 PF04222 Protein of unknown function (DUF416) VCA1552_02648 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCA1552_02649 PF03167 Uracil DNA glycosylase superfamily VCA1552_02650 PF00924 Mechanosensitive ion channel VCA1552_02651 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VCA1552_02651 PF10996 Beta-Casp domain VCA1552_02651 PF00753 Metallo-beta-lactamase superfamily VCA1552_02652 PF02397 Bacterial sugar transferase VCA1552_02653 PF01370 NAD dependent epimerase/dehydratase family VCA1552_02654 PF02719 Polysaccharide biosynthesis protein VCA1552_02659 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_02661 PF00171 Aldehyde dehydrogenase family VCA1552_02661 PF00465 Iron-containing alcohol dehydrogenase VCA1552_02662 PF00501 AMP-binding enzyme VCA1552_02662 PF13193 AMP-binding enzyme C-terminal domain VCA1552_02664 PF14524 Wzt C-terminal domain VCA1552_02664 PF00005 ABC transporter VCA1552_02667 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VCA1552_02668 PF16363 GDP-mannose 4,6 dehydratase VCA1552_02669 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCA1552_02669 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCA1552_02669 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCA1552_02669 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCA1552_02670 PF01050 Mannose-6-phosphate isomerase VCA1552_02670 PF00483 Nucleotidyl transferase VCA1552_02671 PF01370 NAD dependent epimerase/dehydratase family VCA1552_02672 PF01522 Polysaccharide deacetylase VCA1552_02672 PF00457 Glycosyl hydrolases family 11 VCA1552_02675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCA1552_02677 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VCA1552_02678 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VCA1552_02685 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCA1552_02686 PF00535 Glycosyl transferase family 2 VCA1552_02687 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCA1552_02688 PF01467 Cytidylyltransferase-like VCA1552_02689 PF06827 Zinc finger found in FPG and IleRS VCA1552_02689 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VCA1552_02689 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VCA1552_02691 PF00471 Ribosomal protein L33 VCA1552_02692 PF00830 Ribosomal L28 family VCA1552_02693 PF04002 RadC-like JAB domain VCA1552_02694 PF00672 HAMP domain VCA1552_02694 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02694 PF02743 Cache domain VCA1552_02695 PF04127 DNA / pantothenate metabolism flavoprotein VCA1552_02695 PF02441 Flavoprotein VCA1552_02696 PF00440 Bacterial regulatory proteins, tetR family VCA1552_02697 PF03279 Bacterial lipid A biosynthesis acyltransferase VCA1552_02698 PF03279 Bacterial lipid A biosynthesis acyltransferase VCA1552_02699 PF00156 Phosphoribosyl transferase domain VCA1552_02700 PF03725 3' exoribonuclease family, domain 2 VCA1552_02700 PF01138 3' exoribonuclease family, domain 1 VCA1552_02701 PF03755 YicC-like family, N-terminal region VCA1552_02701 PF08340 Domain of unknown function (DUF1732) VCA1552_02702 PF03350 Uncharacterized protein family, UPF0114 VCA1552_02703 PF00367 phosphotransferase system, EIIB VCA1552_02703 PF02378 Phosphotransferase system, EIIC VCA1552_02704 PF13580 SIS domain VCA1552_02705 PF01418 Helix-turn-helix domain, rpiR family VCA1552_02705 PF01380 SIS domain VCA1552_02706 PF01032 FecCD transport family VCA1552_02707 PF01497 Periplasmic binding protein VCA1552_02708 PF00005 ABC transporter VCA1552_02709 PF07715 TonB-dependent Receptor Plug Domain VCA1552_02709 PF00593 TonB dependent receptor VCA1552_02710 PF00005 ABC transporter VCA1552_02710 PF00664 ABC transporter transmembrane region VCA1552_02713 PF00570 HRDC domain VCA1552_02713 PF16124 RecQ zinc-binding VCA1552_02713 PF09382 RQC domain VCA1552_02713 PF00271 Helicase conserved C-terminal domain VCA1552_02713 PF00270 DEAD/DEAH box helicase VCA1552_02714 PF00892 EamA-like transporter family VCA1552_02716 PF12833 Helix-turn-helix domain VCA1552_02717 PF01810 LysE type translocator VCA1552_02719 PF00580 UvrD/REP helicase N-terminal domain VCA1552_02719 PF13361 UvrD-like helicase C-terminal domain VCA1552_02720 PF01432 Peptidase family M3 VCA1552_02721 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VCA1552_02722 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_02722 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCA1552_02724 PF01527 Transposase VCA1552_02725 PF00665 Integrase core domain VCA1552_02739 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCA1552_02741 PF12911 N-terminal TM domain of oligopeptide transport permease C VCA1552_02741 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_02743 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCA1552_02744 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_02744 PF00005 ABC transporter VCA1552_02750 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCA1552_02751 PF13361 UvrD-like helicase C-terminal domain VCA1552_02751 PF00580 UvrD/REP helicase N-terminal domain VCA1552_02752 PF00440 Bacterial regulatory proteins, tetR family VCA1552_02753 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCA1552_02754 PF00873 AcrB/AcrD/AcrF family VCA1552_02755 PF04380 Membrane fusogenic activity VCA1552_02756 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VCA1552_02756 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VCA1552_02757 PF03466 LysR substrate binding domain VCA1552_02757 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_02765 PF12724 Flavodoxin domain VCA1552_02766 PF02386 Cation transport protein VCA1552_02767 PF09186 Domain of unknown function (DUF1949) VCA1552_02767 PF01205 Uncharacterized protein family UPF0029 VCA1552_02768 PF00378 Enoyl-CoA hydratase/isomerase VCA1552_02768 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCA1552_02768 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCA1552_02769 PF02803 Thiolase, C-terminal domain VCA1552_02769 PF00108 Thiolase, N-terminal domain VCA1552_02770 PF03466 LysR substrate binding domain VCA1552_02770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_02771 PF07690 Major Facilitator Superfamily VCA1552_02772 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_02772 PF12804 MobA-like NTP transferase domain VCA1552_02773 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VCA1552_02773 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VCA1552_02774 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCA1552_02774 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCA1552_02775 PF00231 ATP synthase VCA1552_02776 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCA1552_02776 PF00306 ATP synthase alpha/beta chain, C terminal domain VCA1552_02776 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCA1552_02777 PF00213 ATP synthase delta (OSCP) subunit VCA1552_02778 PF00430 ATP synthase B/B' CF(0) VCA1552_02779 PF00137 ATP synthase subunit C VCA1552_02780 PF00119 ATP synthase A chain VCA1552_02781 PF03899 ATP synthase I chain VCA1552_02782 PF17762 HTH domain found in ParB protein VCA1552_02782 PF02195 ParB-like nuclease domain VCA1552_02783 PF13614 AAA domain VCA1552_02784 PF02527 rRNA small subunit methyltransferase G VCA1552_02785 PF13932 GidA associated domain VCA1552_02785 PF01134 Glucose inhibited division protein A VCA1552_02786 PF00258 Flavodoxin VCA1552_02787 PF12631 MnmE helical domain VCA1552_02787 PF01926 50S ribosome-binding GTPase VCA1552_02787 PF10396 GTP-binding protein TrmE N-terminus VCA1552_02788 PF02096 60Kd inner membrane protein VCA1552_02788 PF14849 YidC periplasmic domain VCA1552_02789 PF00825 Ribonuclease P VCA1552_02790 PF00468 Ribosomal protein L34 VCA1552_02791 PF00005 ABC transporter VCA1552_02792 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_02793 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_02798 PF01709 Transcriptional regulator VCA1552_02799 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VCA1552_02799 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VCA1552_02800 PF17200 Single Cache domain 2 VCA1552_02800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02800 PF00672 HAMP domain VCA1552_02801 PF10928 Protein of unknown function (DUF2810) VCA1552_02802 PF17874 MalT-like TPR region VCA1552_02802 PF00196 Bacterial regulatory proteins, luxR family VCA1552_02803 PF00343 Carbohydrate phosphorylase VCA1552_02804 PF02446 4-alpha-glucanotransferase VCA1552_02805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCA1552_02805 PF02806 Alpha amylase, C-terminal all-beta domain VCA1552_02805 PF00128 Alpha amylase, catalytic domain VCA1552_02806 PF05638 Type VI secretion system effector, Hcp VCA1552_02807 PF04717 Type VI secretion system, phage-baseplate injector VCA1552_02807 PF16671 Actin cross-linking domain VCA1552_02812 PF00842 Alanine racemase, C-terminal domain VCA1552_02812 PF01168 Alanine racemase, N-terminal domain VCA1552_02812 PF01757 Acyltransferase family VCA1552_02814 PF00939 Sodium:sulfate symporter transmembrane region VCA1552_02815 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VCA1552_02816 PF00704 Glycosyl hydrolases family 18 VCA1552_02816 PF08329 Chitinase A, N-terminal domain VCA1552_02820 PF00672 HAMP domain VCA1552_02820 PF02743 Cache domain VCA1552_02820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02824 PF01569 PAP2 superfamily VCA1552_02825 PF00375 Sodium:dicarboxylate symporter family VCA1552_02827 PF02630 SCO1/SenC VCA1552_02831 PF03616 Sodium/glutamate symporter VCA1552_02832 PF07238 PilZ domain VCA1552_02832 PF12945 Flagellar protein YcgR VCA1552_02835 PF00529 HlyD membrane-fusion protein of T1SS VCA1552_02835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCA1552_02836 PF11742 Protein of unknown function (DUF3302) VCA1552_02837 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02840 PF01048 Phosphorylase superfamily VCA1552_02841 PF08349 Protein of unknown function (DUF1722) VCA1552_02842 PF13411 MerR HTH family regulatory protein VCA1552_02843 PF00875 DNA photolyase VCA1552_02843 PF03441 FAD binding domain of DNA photolyase VCA1552_02844 PF17969 L,D-transpeptidase C-terminal domain VCA1552_02844 PF03734 L,D-transpeptidase catalytic domain VCA1552_02844 PF01476 LysM domain VCA1552_02846 PF00271 Helicase conserved C-terminal domain VCA1552_02846 PF00270 DEAD/DEAH box helicase VCA1552_02847 PF00326 Prolyl oligopeptidase family VCA1552_02847 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VCA1552_02848 PF07715 TonB-dependent Receptor Plug Domain VCA1552_02848 PF00593 TonB dependent receptor VCA1552_02852 PF12729 Four helix bundle sensory module for signal transduction VCA1552_02852 PF00672 HAMP domain VCA1552_02852 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02853 PF12849 PBP superfamily domain VCA1552_02854 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_02855 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_02856 PF00005 ABC transporter VCA1552_02857 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02857 PF03707 Bacterial signalling protein N terminal repeat VCA1552_02857 PF00563 EAL domain VCA1552_02860 PF01740 STAS domain VCA1552_02860 PF00916 Sulfate permease family VCA1552_02862 PF08525 Opacity-associated protein A N-terminal motif VCA1552_02862 PF01551 Peptidase family M23 VCA1552_02862 PF01476 LysM domain VCA1552_02863 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02863 PF03707 Bacterial signalling protein N terminal repeat VCA1552_02863 PF13188 PAS domain VCA1552_02863 PF00563 EAL domain VCA1552_02865 PF03466 LysR substrate binding domain VCA1552_02865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_02866 PF07690 Major Facilitator Superfamily VCA1552_02867 PF00376 MerR family regulatory protein VCA1552_02867 PF09278 MerR, DNA binding VCA1552_02871 PF00375 Sodium:dicarboxylate symporter family VCA1552_02873 PF02001 Protein of unknown function DUF134 VCA1552_02877 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCA1552_02877 PF07504 Fungalysin/Thermolysin Propeptide Motif VCA1552_02877 PF01447 Thermolysin metallopeptidase, catalytic domain VCA1552_02877 PF01483 Proprotein convertase P-domain VCA1552_02879 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VCA1552_02879 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VCA1552_02880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VCA1552_02880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VCA1552_02881 PF00581 Rhodanese-like domain VCA1552_02882 PF00563 EAL domain VCA1552_02882 PF00196 Bacterial regulatory proteins, luxR family VCA1552_02883 PF13419 Haloacid dehalogenase-like hydrolase VCA1552_02884 PF01740 STAS domain VCA1552_02884 PF00916 Sulfate permease family VCA1552_02885 PF00849 RNA pseudouridylate synthase VCA1552_02897 PF00004 ATPase family associated with various cellular activities (AAA) VCA1552_02897 PF07724 AAA domain (Cdc48 subfamily) VCA1552_02897 PF17871 AAA lid domain VCA1552_02897 PF10431 C-terminal, D2-small domain, of ClpB protein VCA1552_02903 PF04717 Type VI secretion system, phage-baseplate injector VCA1552_02903 PF16671 Actin cross-linking domain VCA1552_02906 PF05025 RbsD / FucU transport protein family VCA1552_02907 PF00005 ABC transporter VCA1552_02908 PF02653 Branched-chain amino acid transport system / permease component VCA1552_02909 PF13407 Periplasmic binding protein domain VCA1552_02910 PF00294 pfkB family carbohydrate kinase VCA1552_02911 PF00356 Bacterial regulatory proteins, lacI family VCA1552_02912 PF04973 Nicotinamide mononucleotide transporter VCA1552_02913 PF01048 Phosphorylase superfamily VCA1552_02915 PF03009 Glycerophosphoryl diester phosphodiesterase family VCA1552_02916 PF07690 Major Facilitator Superfamily VCA1552_02919 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_02919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02919 PF02743 Cache domain VCA1552_02920 PF02954 Bacterial regulatory protein, Fis family VCA1552_02920 PF00158 Sigma-54 interaction domain VCA1552_02920 PF00072 Response regulator receiver domain VCA1552_02923 PF01266 FAD dependent oxidoreductase VCA1552_02924 PF00041 Fibronectin type III domain VCA1552_02924 PF12561 ToxR activated gene A lipoprotein domain VCA1552_02925 PF01327 Polypeptide deformylase VCA1552_02927 PF03334 Na+/H+ antiporter subunit VCA1552_02928 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VCA1552_02932 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VCA1552_02932 PF13244 Domain of unknown function (DUF4040) VCA1552_02932 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter VCA1552_02932 PF00361 Proton-conducting membrane transporter VCA1552_02934 PF00582 Universal stress protein family VCA1552_02935 PF03222 Tryptophan/tyrosine permease family VCA1552_02936 PF01212 Beta-eliminating lyase VCA1552_02938 PF12843 Putative quorum-sensing-regulated virulence factor VCA1552_02940 PF00563 EAL domain VCA1552_02940 PF08448 PAS fold VCA1552_02940 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02942 PF00313 'Cold-shock' DNA-binding domain VCA1552_02945 PF13519 von Willebrand factor type A domain VCA1552_02945 PF07584 Aerotolerance regulator N-terminal VCA1552_02948 PF01882 Protein of unknown function DUF58 VCA1552_02949 PF17863 AAA lid domain VCA1552_02949 PF07726 ATPase family associated with various cellular activities (AAA) VCA1552_02950 PF02743 Cache domain VCA1552_02950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02950 PF00672 HAMP domain VCA1552_02953 PF07662 Na+ dependent nucleoside transporter C-terminus VCA1552_02953 PF01773 Na+ dependent nucleoside transporter N-terminus VCA1552_02953 PF07670 Nucleoside recognition VCA1552_02954 PF07687 Peptidase dimerisation domain VCA1552_02954 PF01546 Peptidase family M20/M25/M40 VCA1552_02956 PF00158 Sigma-54 interaction domain VCA1552_02956 PF01590 GAF domain VCA1552_02957 PF00970 Oxidoreductase FAD-binding domain VCA1552_02957 PF00042 Globin VCA1552_02957 PF00175 Oxidoreductase NAD-binding domain VCA1552_02959 PF00313 'Cold-shock' DNA-binding domain VCA1552_02960 PF03889 Alternative ribosome-rescue factor A VCA1552_02963 PF00072 Response regulator receiver domain VCA1552_02965 PF01256 Carbohydrate kinase VCA1552_02965 PF03853 YjeF-related protein N-terminus VCA1552_02966 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCA1552_02966 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCA1552_02968 PF07885 Ion channel VCA1552_02970 PF00478 IMP dehydrogenase / GMP reductase domain VCA1552_02971 PF00145 C-5 cytosine-specific DNA methylase VCA1552_02975 PF01797 Transposase IS200 like VCA1552_02976 PF00270 DEAD/DEAH box helicase VCA1552_02976 PF00271 Helicase conserved C-terminal domain VCA1552_02977 PF03605 Anaerobic c4-dicarboxylate membrane transporter VCA1552_02978 PF02540 NAD synthase VCA1552_02979 PF01467 Cytidylyltransferase-like VCA1552_02981 PF11849 Domain of unknown function (DUF3369) VCA1552_02982 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_02982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_02982 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_02984 PF03553 Na+/H+ antiporter family VCA1552_02986 PF07690 Major Facilitator Superfamily VCA1552_02987 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_02987 PF08448 PAS fold VCA1552_02988 PF00657 GDSL-like Lipase/Acylhydrolase VCA1552_02989 PF07968 Leukocidin/Hemolysin toxin family VCA1552_02989 PF12563 Hemolytic toxin N terminal VCA1552_02989 PF16458 Beta-prism lectin VCA1552_02990 PF12729 Four helix bundle sensory module for signal transduction VCA1552_02990 PF00672 HAMP domain VCA1552_02990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_02991 PF00561 alpha/beta hydrolase fold VCA1552_02992 PF03280 Proteobacterial lipase chaperone protein VCA1552_02993 PF05547 Immune inhibitor A peptidase M6 VCA1552_02993 PF00801 PKD domain VCA1552_02997 PF01032 FecCD transport family VCA1552_02998 PF01032 FecCD transport family VCA1552_02999 PF00005 ABC transporter VCA1552_03000 PF12833 Helix-turn-helix domain VCA1552_03001 PF00593 TonB dependent receptor VCA1552_03001 PF07715 TonB-dependent Receptor Plug Domain VCA1552_03003 PF00871 Acetokinase family VCA1552_03006 PF00672 HAMP domain VCA1552_03006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03006 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_03007 PF00072 Response regulator receiver domain VCA1552_03007 PF00486 Transcriptional regulatory protein, C terminal VCA1552_03009 PF01261 Xylose isomerase-like TIM barrel VCA1552_03010 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VCA1552_03012 PF00596 Class II Aldolase and Adducin N-terminal domain VCA1552_03013 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCA1552_03014 PF03611 PTS system sugar-specific permease component VCA1552_03015 PF00455 DeoR C terminal sensor domain VCA1552_03015 PF08220 DeoR-like helix-turn-helix domain VCA1552_03017 PF01292 Prokaryotic cytochrome b561 VCA1552_03018 PF00128 Alpha amylase, catalytic domain VCA1552_03019 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_03023 PF00072 Response regulator receiver domain VCA1552_03023 PF00486 Transcriptional regulatory protein, C terminal VCA1552_03024 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_03024 PF00672 HAMP domain VCA1552_03024 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03024 PF14827 Double sensory domain of two-component sensor kinase VCA1552_03024 PF13426 PAS domain VCA1552_03032 PF07690 Major Facilitator Superfamily VCA1552_03033 PF02743 Cache domain VCA1552_03033 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03033 PF00672 HAMP domain VCA1552_03035 PF07943 Penicillin-binding protein 5, C-terminal domain VCA1552_03035 PF00768 D-alanyl-D-alanine carboxypeptidase VCA1552_03038 PF00194 Eukaryotic-type carbonic anhydrase VCA1552_03039 PF01797 Transposase IS200 like VCA1552_03040 PF02347 Glycine cleavage system P-protein VCA1552_03041 PF01597 Glycine cleavage H-protein VCA1552_03042 PF00464 Serine hydroxymethyltransferase VCA1552_03044 PF08669 Glycine cleavage T-protein C-terminal barrel domain VCA1552_03044 PF01571 Aminomethyltransferase folate-binding domain VCA1552_03046 PF05598 Transposase domain (DUF772) VCA1552_03046 PF01609 Transposase DDE domain VCA1552_03051 PF02824 TGS domain VCA1552_03051 PF03129 Anticodon binding domain VCA1552_03051 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCA1552_03051 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VCA1552_03052 PF05198 Translation initiation factor IF-3, N-terminal domain VCA1552_03052 PF00707 Translation initiation factor IF-3, C-terminal domain VCA1552_03053 PF01632 Ribosomal protein L35 VCA1552_03054 PF00453 Ribosomal protein L20 VCA1552_03055 PF13495 Phage integrase, N-terminal SAM-like domain VCA1552_03055 PF00589 Phage integrase family VCA1552_03060 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_03064 PF13286 Phosphohydrolase-associated domain VCA1552_03064 PF01966 HD domain VCA1552_03069 PF00293 NUDIX domain VCA1552_03071 PF13302 Acetyltransferase (GNAT) domain VCA1552_03072 PF08212 Lipocalin-like domain VCA1552_03076 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ VCA1552_03078 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_03085 PF17676 LD-carboxypeptidase C-terminal domain VCA1552_03085 PF02016 LD-carboxypeptidase N-terminal domain VCA1552_03088 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_03093 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_03096 PF08212 Lipocalin-like domain VCA1552_03098 PF04229 GrpB protein VCA1552_03099 PF01810 LysE type translocator VCA1552_03104 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VCA1552_03114 PF00665 Integrase core domain VCA1552_03115 PF01527 Transposase VCA1552_03126 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB VCA1552_03127 PF01381 Helix-turn-helix VCA1552_03128 PF02567 Phenazine biosynthesis-like protein VCA1552_03134 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_03137 PF08212 Lipocalin-like domain VCA1552_03144 PF13302 Acetyltransferase (GNAT) domain VCA1552_03158 PF17676 LD-carboxypeptidase C-terminal domain VCA1552_03158 PF02016 LD-carboxypeptidase N-terminal domain VCA1552_03162 PF08212 Lipocalin-like domain VCA1552_03163 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VCA1552_03166 PF01555 DNA methylase VCA1552_03175 PF12833 Helix-turn-helix domain VCA1552_03175 PF01965 DJ-1/PfpI family VCA1552_03181 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_03186 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VCA1552_03187 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VCA1552_03190 PF01609 Transposase DDE domain VCA1552_03190 PF05598 Transposase domain (DUF772) VCA1552_03191 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_03194 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_03196 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VCA1552_03207 PF07859 alpha/beta hydrolase fold VCA1552_03210 PF01797 Transposase IS200 like VCA1552_03220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_03222 PF01527 Transposase VCA1552_03223 PF00665 Integrase core domain VCA1552_03225 PF03477 ATP cone domain VCA1552_03225 PF13597 Anaerobic ribonucleoside-triphosphate reductase VCA1552_03227 PF00155 Aminotransferase class I and II VCA1552_03228 PF18030 RimK PreATP-grasp domain VCA1552_03228 PF08443 RimK-like ATP-grasp domain VCA1552_03229 PF02378 Phosphotransferase system, EIIC VCA1552_03229 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCA1552_03230 PF00294 pfkB family carbohydrate kinase VCA1552_03231 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCA1552_03231 PF00381 PTS HPr component phosphorylation site VCA1552_03232 PF00356 Bacterial regulatory proteins, lacI family VCA1552_03232 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCA1552_03233 PF12320 Type 5 capsule protein repressor C-terminal domain VCA1552_03233 PF00149 Calcineurin-like phosphoesterase VCA1552_03234 PF13476 AAA domain VCA1552_03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03235 PF00072 Response regulator receiver domain VCA1552_03236 PF00155 Aminotransferase class I and II VCA1552_03238 PF00654 Voltage gated chloride channel VCA1552_03239 PF02492 CobW/HypB/UreG, nucleotide-binding domain VCA1552_03239 PF07683 Cobalamin synthesis protein cobW C-terminal domain VCA1552_03240 PF01926 50S ribosome-binding GTPase VCA1552_03241 PF02705 K+ potassium transporter VCA1552_03242 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VCA1552_03242 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VCA1552_03242 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCA1552_03242 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VCA1552_03242 PF10371 Domain of unknown function VCA1552_03243 PF02702 Osmosensitive K+ channel His kinase sensor domain VCA1552_03243 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_03243 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03243 PF13493 Domain of unknown function (DUF4118) VCA1552_03244 PF00486 Transcriptional regulatory protein, C terminal VCA1552_03244 PF00072 Response regulator receiver domain VCA1552_03245 PF02416 mttA/Hcf106 family VCA1552_03246 PF09335 SNARE associated Golgi protein VCA1552_03248 PF10388 EAL-domain associated signalling protein domain VCA1552_03248 PF00563 EAL domain VCA1552_03250 PF01292 Prokaryotic cytochrome b561 VCA1552_03251 PF04264 YceI-like domain VCA1552_03252 PF01226 Formate/nitrite transporter VCA1552_03253 PF03466 LysR substrate binding domain VCA1552_03253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03254 PF06496 Protein of unknown function (DUF1097) VCA1552_03255 PF11398 Protein of unknown function (DUF2813) VCA1552_03256 PF00149 Calcineurin-like phosphoesterase VCA1552_03256 PF02872 5'-nucleotidase, C-terminal domain VCA1552_03259 PF03741 Integral membrane protein TerC family VCA1552_03261 PF08274 PhnA Zinc-Ribbon VCA1552_03261 PF03831 PhnA domain VCA1552_03267 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03267 PF17151 Periplasmic sensor domain VCA1552_03271 PF17158 Membrane-associated sensor, integral membrane domain VCA1552_03271 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03274 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VCA1552_03274 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VCA1552_03274 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VCA1552_03275 PF02233 NAD(P) transhydrogenase beta subunit VCA1552_03277 PF00072 Response regulator receiver domain VCA1552_03277 PF00486 Transcriptional regulatory protein, C terminal VCA1552_03280 PF03701 Uncharacterised protein family (UPF0181) VCA1552_03281 PF01253 Translation initiation factor SUI1 VCA1552_03283 PF01820 D-ala D-ala ligase N-terminus VCA1552_03283 PF07478 D-ala D-ala ligase C-terminus VCA1552_03285 PF13380 CoA binding domain VCA1552_03285 PF13607 Succinyl-CoA ligase like flavodoxin domain VCA1552_03285 PF00583 Acetyltransferase (GNAT) family VCA1552_03286 PF03466 LysR substrate binding domain VCA1552_03286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03287 PF00593 TonB dependent receptor VCA1552_03287 PF07715 TonB-dependent Receptor Plug Domain VCA1552_03288 PF12793 Sugar transport-related sRNA regulator N-term VCA1552_03288 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCA1552_03290 PF03061 Thioesterase superfamily VCA1552_03294 PF02798 Glutathione S-transferase, N-terminal domain VCA1552_03294 PF00043 Glutathione S-transferase, C-terminal domain VCA1552_03297 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_03297 PF12804 MobA-like NTP transferase domain VCA1552_03297 PF03479 Plants and Prokaryotes Conserved (PCC) domain VCA1552_03298 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_03298 PF00005 ABC transporter VCA1552_03299 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03299 PF12911 N-terminal TM domain of oligopeptide transport permease C VCA1552_03300 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03301 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCA1552_03306 PF00854 POT family VCA1552_03308 PF07702 UTRA domain VCA1552_03308 PF00392 Bacterial regulatory proteins, gntR family VCA1552_03309 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03310 PF00005 ABC transporter VCA1552_03312 PF00266 Aminotransferase class-V VCA1552_03314 PF13419 Haloacid dehalogenase-like hydrolase VCA1552_03315 PF01272 Transcription elongation factor, GreA/GreB, C-term VCA1552_03315 PF14760 Rnk N-terminus VCA1552_03316 PF13419 Haloacid dehalogenase-like hydrolase VCA1552_03319 PF01741 Large-conductance mechanosensitive channel, MscL VCA1552_03320 PF01268 Formate--tetrahydrofolate ligase VCA1552_03321 PF01641 SelR domain VCA1552_03321 PF01625 Peptide methionine sulfoxide reductase VCA1552_03322 PF01227 GTP cyclohydrolase I VCA1552_03323 PF03454 MoeA C-terminal region (domain IV) VCA1552_03323 PF03453 MoeA N-terminal region (domain I and II) VCA1552_03323 PF00994 Probable molybdopterin binding domain VCA1552_03324 PF00899 ThiF family VCA1552_03326 PF00581 Rhodanese-like domain VCA1552_03327 PF04198 Putative sugar-binding domain VCA1552_03328 PF00923 Transaldolase/Fructose-6-phosphate aldolase VCA1552_03329 PF00456 Transketolase, thiamine diphosphate binding domain VCA1552_03329 PF02780 Transketolase, C-terminal domain VCA1552_03329 PF02779 Transketolase, pyrimidine binding domain VCA1552_03332 PF07517 SecA DEAD-like domain VCA1552_03332 PF02810 SEC-C motif VCA1552_03332 PF07516 SecA Wing and Scaffold domain VCA1552_03332 PF01043 SecA preprotein cross-linking domain VCA1552_03334 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCA1552_03334 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCA1552_03337 PF06942 GlpM protein VCA1552_03339 PF03466 LysR substrate binding domain VCA1552_03339 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03340 PF03992 Antibiotic biosynthesis monooxygenase VCA1552_03341 PF00881 Nitroreductase family VCA1552_03342 PF00873 AcrB/AcrD/AcrF family VCA1552_03345 PF04143 Sulphur transport VCA1552_03348 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCA1552_03348 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCA1552_03357 PF00367 phosphotransferase system, EIIB VCA1552_03357 PF02378 Phosphotransferase system, EIIC VCA1552_03359 PF08244 Glycosyl hydrolases family 32 C terminal VCA1552_03359 PF00251 Glycosyl hydrolases family 32 N-terminal domain VCA1552_03360 PF00294 pfkB family carbohydrate kinase VCA1552_03361 PF01266 FAD dependent oxidoreductase VCA1552_03361 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VCA1552_03362 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03362 PF00672 HAMP domain VCA1552_03363 PF13488 Glycine zipper VCA1552_03363 PF00691 OmpA family VCA1552_03364 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCA1552_03364 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCA1552_03365 PF13419 Haloacid dehalogenase-like hydrolase VCA1552_03366 PF12729 Four helix bundle sensory module for signal transduction VCA1552_03366 PF00672 HAMP domain VCA1552_03366 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03367 PF03606 C4-dicarboxylate anaerobic carrier VCA1552_03368 PF03315 Serine dehydratase beta chain VCA1552_03368 PF03313 Serine dehydratase alpha chain VCA1552_03369 PF00474 Sodium:solute symporter family VCA1552_03373 PF00356 Bacterial regulatory proteins, lacI family VCA1552_03374 PF00072 Response regulator receiver domain VCA1552_03374 PF00196 Bacterial regulatory proteins, luxR family VCA1552_03375 PF00672 HAMP domain VCA1552_03375 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VCA1552_03375 PF07730 Histidine kinase VCA1552_03375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03376 PF12838 4Fe-4S dicluster domain VCA1552_03376 PF13187 4Fe-4S dicluster domain VCA1552_03378 PF00384 Molybdopterin oxidoreductase VCA1552_03378 PF01568 Molydopterin dinucleotide binding domain VCA1552_03378 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VCA1552_03379 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VCA1552_03380 PF03264 NapC/NirT cytochrome c family, N-terminal region VCA1552_03382 PF01966 HD domain VCA1552_03383 PF00072 Response regulator receiver domain VCA1552_03383 PF00196 Bacterial regulatory proteins, luxR family VCA1552_03384 PF05231 MASE1 VCA1552_03384 PF07730 Histidine kinase VCA1552_03384 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03385 PF07690 Major Facilitator Superfamily VCA1552_03387 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03388 PF08402 TOBE domain VCA1552_03388 PF00005 ABC transporter VCA1552_03389 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VCA1552_03391 PF00108 Thiolase, N-terminal domain VCA1552_03391 PF02803 Thiolase, C-terminal domain VCA1552_03392 PF00106 short chain dehydrogenase VCA1552_03393 PF02355 Protein export membrane protein VCA1552_03393 PF07549 SecD/SecF GG Motif VCA1552_03394 PF13721 SecD export protein N-terminal TM region VCA1552_03394 PF02355 Protein export membrane protein VCA1552_03394 PF07549 SecD/SecF GG Motif VCA1552_03397 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03397 PF17158 Membrane-associated sensor, integral membrane domain VCA1552_03398 PF00483 Nucleotidyl transferase VCA1552_03399 PF00704 Glycosyl hydrolases family 18 VCA1552_03399 PF06483 Chitinase C VCA1552_03400 PF00465 Iron-containing alcohol dehydrogenase VCA1552_03402 PF14532 Sigma-54 interaction domain VCA1552_03402 PF02954 Bacterial regulatory protein, Fis family VCA1552_03402 PF00072 Response regulator receiver domain VCA1552_03403 PF02743 Cache domain VCA1552_03403 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03403 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_03406 PF07690 Major Facilitator Superfamily VCA1552_03407 PF02887 Pyruvate kinase, alpha/beta domain VCA1552_03407 PF00224 Pyruvate kinase, barrel domain VCA1552_03408 PF00672 HAMP domain VCA1552_03408 PF00072 Response regulator receiver domain VCA1552_03408 PF01627 Hpt domain VCA1552_03408 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03408 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_03409 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCA1552_03410 PF02142 MGS-like domain VCA1552_03411 PF00857 Isochorismatase family VCA1552_03412 PF01219 Prokaryotic diacylglycerol kinase VCA1552_03415 PF00580 UvrD/REP helicase N-terminal domain VCA1552_03415 PF13361 UvrD-like helicase C-terminal domain VCA1552_03415 PF12462 DNA helicase IV / RNA helicase N terminal VCA1552_03416 PF12805 FUSC-like inner membrane protein yccS VCA1552_03417 PF13188 PAS domain VCA1552_03417 PF00072 Response regulator receiver domain VCA1552_03417 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03417 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_03417 PF08448 PAS fold VCA1552_03422 PF03459 TOBE domain VCA1552_03422 PF00005 ABC transporter VCA1552_03423 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03425 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VCA1552_03425 PF07685 CobB/CobQ-like glutamine amidotransferase domain VCA1552_03433 PF00072 Response regulator receiver domain VCA1552_03433 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_03433 PF09308 LuxQ, periplasmic VCA1552_03433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03434 PF13407 Periplasmic binding protein domain VCA1552_03436 PF01541 GIY-YIG catalytic domain VCA1552_03437 PF04337 Protein of unknown function, DUF480 VCA1552_03439 PF04363 Protein of unknown function (DUF496) VCA1552_03442 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VCA1552_03442 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VCA1552_03443 PF00230 Major intrinsic protein VCA1552_03444 PF01266 FAD dependent oxidoreductase VCA1552_03444 PF04324 BFD-like [2Fe-2S] binding domain VCA1552_03445 PF00890 FAD binding domain VCA1552_03446 PF02754 Cysteine-rich domain VCA1552_03446 PF13183 4Fe-4S dicluster domain VCA1552_03447 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VCA1552_03447 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VCA1552_03448 PF00085 Thioredoxin VCA1552_03449 PF07690 Major Facilitator Superfamily VCA1552_03454 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03454 PF03466 LysR substrate binding domain VCA1552_03455 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03456 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03457 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_03458 PF00005 ABC transporter VCA1552_03460 PF05762 VWA domain containing CoxE-like protein VCA1552_03461 PF12592 Protein of unknown function (DUF3763) VCA1552_03461 PF07728 AAA domain (dynein-related subfamily) VCA1552_03461 PF17868 AAA lid domain VCA1552_03462 PF00293 NUDIX domain VCA1552_03463 PF01212 Beta-eliminating lyase VCA1552_03464 PF00034 Cytochrome c VCA1552_03465 PF08361 MAATS-type transcriptional repressor, C-terminal region VCA1552_03465 PF00440 Bacterial regulatory proteins, tetR family VCA1552_03466 PF00270 DEAD/DEAH box helicase VCA1552_03466 PF00271 Helicase conserved C-terminal domain VCA1552_03467 PF04336 Acyl carrier protein phosphodiesterase VCA1552_03469 PF03222 Tryptophan/tyrosine permease family VCA1552_03470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03470 PF00672 HAMP domain VCA1552_03470 PF12729 Four helix bundle sensory module for signal transduction VCA1552_03471 PF16363 GDP-mannose 4,6 dehydratase VCA1552_03472 PF03746 LamB/YcsF family VCA1552_03474 PF02626 Carboxyltransferase domain, subdomain A and B VCA1552_03476 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VCA1552_03476 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VCA1552_03478 PF00005 ABC transporter VCA1552_03479 PF13472 GDSL-like Lipase/Acylhydrolase family VCA1552_03480 PF12241 Trans-2-enoyl-CoA reductase catalytic region VCA1552_03480 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VCA1552_03480 PF07055 Enoyl reductase FAD binding domain VCA1552_03481 PF00498 FHA domain VCA1552_03481 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03481 PF00563 EAL domain VCA1552_03483 PF01556 DnaJ C terminal domain VCA1552_03483 PF00684 DnaJ central domain VCA1552_03483 PF00226 DnaJ domain VCA1552_03486 PF00665 Integrase core domain VCA1552_03487 PF01527 Transposase VCA1552_03490 PF00239 Resolvase, N terminal domain VCA1552_03490 PF02796 Helix-turn-helix domain of resolvase VCA1552_03492 PF13419 Haloacid dehalogenase-like hydrolase VCA1552_03495 PF00294 pfkB family carbohydrate kinase VCA1552_03496 PF00884 Sulfatase VCA1552_03498 PF00270 DEAD/DEAH box helicase VCA1552_03498 PF00271 Helicase conserved C-terminal domain VCA1552_03498 PF03880 DbpA RNA binding domain VCA1552_03499 PF08206 Ribonuclease B OB domain VCA1552_03499 PF00575 S1 RNA binding domain VCA1552_03499 PF00773 RNB domain VCA1552_03501 PF12849 PBP superfamily domain VCA1552_03502 PF01575 MaoC like domain VCA1552_03503 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VCA1552_03505 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VCA1552_03505 PF18416 N-acetylglucosamine binding protein domain 2 VCA1552_03506 PF04151 Bacterial pre-peptidase C-terminal domain VCA1552_03506 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCA1552_03506 PF07504 Fungalysin/Thermolysin Propeptide Motif VCA1552_03506 PF03413 Peptidase propeptide and YPEB domain VCA1552_03506 PF01447 Thermolysin metallopeptidase, catalytic domain VCA1552_03507 PF04151 Bacterial pre-peptidase C-terminal domain VCA1552_03507 PF04389 Peptidase family M28 VCA1552_03508 PF00491 Arginase family VCA1552_03509 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VCA1552_03509 PF17944 Arginine decarboxylase C-terminal helical extension VCA1552_03509 PF17810 Arginine decarboxylase helical bundle domain VCA1552_03511 PF03448 MgtE intracellular N domain VCA1552_03511 PF01769 Divalent cation transporter VCA1552_03511 PF00571 CBS domain VCA1552_03512 PF00166 Chaperonin 10 Kd subunit VCA1552_03513 PF00118 TCP-1/cpn60 chaperonin family VCA1552_03515 PF00696 Amino acid kinase family VCA1552_03515 PF13840 ACT domain VCA1552_03516 PF06339 Ectoine synthase VCA1552_03517 PF00202 Aminotransferase class-III VCA1552_03518 PF00583 Acetyltransferase (GNAT) family VCA1552_03520 PF01329 Pterin 4 alpha carbinolamine dehydratase VCA1552_03521 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VCA1552_03522 PF13193 AMP-binding enzyme C-terminal domain VCA1552_03522 PF00501 AMP-binding enzyme VCA1552_03526 PF03466 LysR substrate binding domain VCA1552_03526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03528 PF00892 EamA-like transporter family VCA1552_03529 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VCA1552_03529 PF14602 Hexapeptide repeat of succinyl-transferase VCA1552_03529 PF00132 Bacterial transferase hexapeptide (six repeats) VCA1552_03530 PF00571 CBS domain VCA1552_03530 PF03471 Transporter associated domain VCA1552_03530 PF01595 Cyclin M transmembrane N-terminal domain VCA1552_03531 PF02566 OsmC-like protein VCA1552_03533 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCA1552_03534 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCA1552_03534 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCA1552_03537 PF13520 Amino acid permease VCA1552_03538 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03540 PF00072 Response regulator receiver domain VCA1552_03540 PF04397 LytTr DNA-binding domain VCA1552_03541 PF13492 GAF domain VCA1552_03541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03541 PF06580 Histidine kinase VCA1552_03541 PF07694 5TMR of 5TMR-LYT VCA1552_03544 PF00005 ABC transporter VCA1552_03544 PF12704 MacB-like periplasmic core domain VCA1552_03544 PF02687 FtsX-like permease family VCA1552_03545 PF00005 ABC transporter VCA1552_03547 PF00248 Aldo/keto reductase family VCA1552_03548 PF00128 Alpha amylase, catalytic domain VCA1552_03549 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCA1552_03550 PF12262 Bacterial virulence factor lipase N-terminal VCA1552_03551 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03551 PF08447 PAS fold VCA1552_03551 PF13426 PAS domain VCA1552_03552 PF04151 Bacterial pre-peptidase C-terminal domain VCA1552_03552 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCA1552_03552 PF01447 Thermolysin metallopeptidase, catalytic domain VCA1552_03552 PF07504 Fungalysin/Thermolysin Propeptide Motif VCA1552_03552 PF03413 Peptidase propeptide and YPEB domain VCA1552_03553 PF03922 OmpW family VCA1552_03555 PF00768 D-alanyl-D-alanine carboxypeptidase VCA1552_03556 PF00155 Aminotransferase class I and II VCA1552_03556 PF00392 Bacterial regulatory proteins, gntR family VCA1552_03557 PF01654 Cytochrome bd terminal oxidase subunit I VCA1552_03558 PF02322 Cytochrome bd terminal oxidase subunit II VCA1552_03561 PF00291 Pyridoxal-phosphate dependent enzyme VCA1552_03562 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03562 PF03466 LysR substrate binding domain VCA1552_03569 PF08240 Alcohol dehydrogenase GroES-like domain VCA1552_03569 PF00107 Zinc-binding dehydrogenase VCA1552_03570 PF00155 Aminotransferase class I and II VCA1552_03574 PF03466 LysR substrate binding domain VCA1552_03574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCA1552_03580 PF01966 HD domain VCA1552_03581 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VCA1552_03581 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VCA1552_03582 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VCA1552_03583 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VCA1552_03583 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VCA1552_03588 PF02595 Glycerate kinase family VCA1552_03589 PF02447 GntP family permease VCA1552_03590 PF05651 Putative sugar diacid recognition VCA1552_03590 PF17853 GGDEF-like domain VCA1552_03590 PF13556 PucR C-terminal helix-turn-helix domain VCA1552_03591 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03591 PF00672 HAMP domain VCA1552_03592 PF01243 Pyridoxamine 5'-phosphate oxidase VCA1552_03593 PF06228 Haem utilisation ChuX/HutX VCA1552_03594 PF04055 Radical SAM superfamily VCA1552_03595 PF03544 Gram-negative bacterial TonB protein C-terminal VCA1552_03596 PF01618 MotA/TolQ/ExbB proton channel family VCA1552_03597 PF02472 Biopolymer transport protein ExbD/TolR VCA1552_03598 PF01497 Periplasmic binding protein VCA1552_03599 PF01032 FecCD transport family VCA1552_03600 PF00005 ABC transporter VCA1552_03606 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03606 PF00672 HAMP domain VCA1552_03606 PF02743 Cache domain VCA1552_03607 PF03476 MOSC N-terminal beta barrel domain VCA1552_03607 PF03473 MOSC domain VCA1552_03607 PF00111 2Fe-2S iron-sulfur cluster binding domain VCA1552_03607 PF00111 2Fe-2S iron-sulfur cluster binding domain VCA1552_03607 PF03476 MOSC N-terminal beta barrel domain VCA1552_03607 PF03473 MOSC domain VCA1552_03608 PF01979 Amidohydrolase family VCA1552_03610 PF05656 Protein of unknown function (DUF805) VCA1552_03612 PF05958 tRNA (Uracil-5-)-methyltransferase VCA1552_03613 PF05661 Protein of unknown function (DUF808) VCA1552_03616 PF00313 'Cold-shock' DNA-binding domain VCA1552_03621 PF08448 PAS fold VCA1552_03621 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03622 PF00455 DeoR C terminal sensor domain VCA1552_03622 PF08220 DeoR-like helix-turn-helix domain VCA1552_03626 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03627 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03627 PF14785 Maltose transport system permease protein MalF P2 domain VCA1552_03628 PF01547 Bacterial extracellular solute-binding protein VCA1552_03629 PF00005 ABC transporter VCA1552_03629 PF08402 TOBE domain VCA1552_03630 PF13302 Acetyltransferase (GNAT) domain VCA1552_03633 PF01906 Putative heavy-metal-binding VCA1552_03634 PF00196 Bacterial regulatory proteins, luxR family VCA1552_03636 PF00072 Response regulator receiver domain VCA1552_03636 PF01584 CheW-like domain VCA1552_03637 PF01047 MarR family VCA1552_03638 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03642 PF00563 EAL domain VCA1552_03642 PF03707 Bacterial signalling protein N terminal repeat VCA1552_03642 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03646 PF03466 LysR substrate binding domain VCA1552_03646 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03647 PF00990 Diguanylate cyclase, GGDEF domain VCA1552_03647 PF00563 EAL domain VCA1552_03649 PF02678 Pirin VCA1552_03649 PF05726 Pirin C-terminal cupin domain VCA1552_03650 PF06865 Pyrimidine/purine nucleoside phosphorylase VCA1552_03652 PF07690 Major Facilitator Superfamily VCA1552_03654 PF00672 HAMP domain VCA1552_03654 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03654 PF17200 Single Cache domain 2 VCA1552_03655 PF05362 Lon protease (S16) C-terminal proteolytic domain VCA1552_03655 PF13654 AAA domain VCA1552_03657 PF00005 ABC transporter VCA1552_03657 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_03658 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_03659 PF13426 PAS domain VCA1552_03659 PF08447 PAS fold VCA1552_03659 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03662 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03662 PF03466 LysR substrate binding domain VCA1552_03663 PF02652 L-lactate permease VCA1552_03664 PF01070 FMN-dependent dehydrogenase VCA1552_03666 PF03618 Kinase/pyrophosphorylase VCA1552_03667 PF00391 PEP-utilising enzyme, mobile domain VCA1552_03667 PF02896 PEP-utilising enzyme, TIM barrel domain VCA1552_03667 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VCA1552_03668 PF08447 PAS fold VCA1552_03668 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03669 PF01554 MatE VCA1552_03670 PF00270 DEAD/DEAH box helicase VCA1552_03670 PF00271 Helicase conserved C-terminal domain VCA1552_03671 PF03466 LysR substrate binding domain VCA1552_03671 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03673 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCA1552_03675 PF00005 ABC transporter VCA1552_03675 PF00664 ABC transporter transmembrane region VCA1552_03677 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCA1552_03679 PF01810 LysE type translocator VCA1552_03680 PF12833 Helix-turn-helix domain VCA1552_03683 PF01557 Fumarylacetoacetate (FAA) hydrolase family VCA1552_03684 PF01047 MarR family VCA1552_03685 PF02566 OsmC-like protein VCA1552_03686 PF13609 Gram-negative porin VCA1552_03687 PF00892 EamA-like transporter family VCA1552_03688 PF00462 Glutaredoxin VCA1552_03689 PF07670 Nucleoside recognition VCA1552_03690 PF07670 Nucleoside recognition VCA1552_03691 PF03600 Citrate transporter VCA1552_03693 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VCA1552_03693 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VCA1552_03694 PF00730 HhH-GPD superfamily base excision DNA repair protein VCA1552_03694 PF06029 AlkA N-terminal domain VCA1552_03695 PF07681 DoxX VCA1552_03696 PF03466 LysR substrate binding domain VCA1552_03696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03700 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VCA1552_03702 PF07148 Maltose operon periplasmic protein precursor (MalM) VCA1552_03703 PF02264 LamB porin VCA1552_03704 PF00128 Alpha amylase, catalytic domain VCA1552_03704 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCA1552_03706 PF16591 Helical bimodular sensor domain VCA1552_03706 PF00672 HAMP domain VCA1552_03706 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03709 PF00672 HAMP domain VCA1552_03709 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03711 PF00793 DAHP synthetase I family VCA1552_03712 PF00005 ABC transporter VCA1552_03713 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03714 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCA1552_03715 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03716 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCA1552_03716 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCA1552_03716 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCA1552_03716 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCA1552_03717 PF04225 Opacity-associated protein A LysM-like domain VCA1552_03717 PF01551 Peptidase family M23 VCA1552_03720 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCA1552_03720 PF02378 Phosphotransferase system, EIIC VCA1552_03720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCA1552_03721 PF08125 Mannitol dehydrogenase C-terminal domain VCA1552_03721 PF01232 Mannitol dehydrogenase Rossmann domain VCA1552_03722 PF05068 Mannitol repressor VCA1552_03723 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VCA1552_03729 PF13460 NAD(P)H-binding VCA1552_03730 PF03466 LysR substrate binding domain VCA1552_03730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03731 PF00672 HAMP domain VCA1552_03731 PF02743 Cache domain VCA1552_03731 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03732 PF00106 short chain dehydrogenase VCA1552_03733 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCA1552_03733 PF03466 LysR substrate binding domain VCA1552_03734 PF04013 Putative SAM-dependent RNA methyltransferase VCA1552_03735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VCA1552_03737 PF13520 Amino acid permease VCA1552_03738 PF01276 Orn/Lys/Arg decarboxylase, major domain VCA1552_03738 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCA1552_03738 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCA1552_03739 PF00171 Aldehyde dehydrogenase family VCA1552_03740 PF01037 Lrp/AsnC ligand binding domain VCA1552_03741 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03741 PF02743 Cache domain VCA1552_03741 PF00672 HAMP domain VCA1552_03743 PF00474 Sodium:solute symporter family VCA1552_03745 PF00171 Aldehyde dehydrogenase family VCA1552_03745 PF01619 Proline dehydrogenase VCA1552_03745 PF14850 DNA-binding domain of Proline dehydrogenase VCA1552_03745 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VCA1552_03746 PF12833 Helix-turn-helix domain VCA1552_03748 PF03781 Sulfatase-modifying factor enzyme 1 VCA1552_03749 PF00196 Bacterial regulatory proteins, luxR family VCA1552_03749 PF00072 Response regulator receiver domain VCA1552_03750 PF01243 Pyridoxamine 5'-phosphate oxidase VCA1552_03750 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VCA1552_03751 PF00529 HlyD membrane-fusion protein of T1SS VCA1552_03754 PF00005 ABC transporter VCA1552_03754 PF00664 ABC transporter transmembrane region VCA1552_03754 PF03412 Peptidase C39 family VCA1552_03756 PF00072 Response regulator receiver domain VCA1552_03756 PF00486 Transcriptional regulatory protein, C terminal VCA1552_03758 PF02743 Cache domain VCA1552_03758 PF00672 HAMP domain VCA1552_03758 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03759 PF00072 Response regulator receiver domain VCA1552_03759 PF01339 CheB methylesterase VCA1552_03760 PF03975 CheD chemotactic sensory transduction VCA1552_03761 PF03705 CheR methyltransferase, all-alpha domain VCA1552_03761 PF01739 CheR methyltransferase, SAM binding domain VCA1552_03762 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA1552_03762 PF02203 Tar ligand binding domain homologue VCA1552_03762 PF00672 HAMP domain VCA1552_03763 PF01584 CheW-like domain VCA1552_03764 PF01584 CheW-like domain VCA1552_03765 PF09078 CheY binding VCA1552_03765 PF01584 CheW-like domain VCA1552_03765 PF01627 Hpt domain VCA1552_03765 PF02895 Signal transducing histidine kinase, homodimeric domain VCA1552_03765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03766 PF00072 Response regulator receiver domain VCA1552_03769 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03770 PF12911 N-terminal TM domain of oligopeptide transport permease C VCA1552_03770 PF00528 Binding-protein-dependent transport system inner membrane component VCA1552_03771 PF00005 ABC transporter VCA1552_03771 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA1552_03772 PF00884 Sulfatase VCA1552_03772 PF08019 Phosphoethanolamine transferase EptA/EptB VCA1552_03773 PF08521 Two-component sensor kinase N-terminal VCA1552_03773 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCA1552_03773 PF00512 His Kinase A (phospho-acceptor) domain VCA1552_03774 PF00072 Response regulator receiver domain VCA1552_03774 PF00486 Transcriptional regulatory protein, C terminal VCA1552_03778 PF00501 AMP-binding enzyme VCA1552_03780 PF05127 Helicase VCA1552_03780 PF13718 GNAT acetyltransferase 2 VCA1552_03781 PF13416 Bacterial extracellular solute-binding protein VCA1552_03782 PF02195 ParB-like nuclease domain VCA1552_03782 PF08775 ParB family VCA1552_03783 PF18607 ParA helix turn helix domain VCA1552_03783 PF13614 AAA domain