locus-tag class description EEL44_00010 PF00456 Transketolase, thiamine diphosphate binding domain EEL44_00010 PF02779 Transketolase, pyrimidine binding domain EEL44_00010 PF02780 Transketolase, C-terminal domain EEL44_00015 PF00923 Transaldolase/Fructose-6-phosphate aldolase EEL44_00025 PF04198 Putative sugar-binding domain EEL44_00030 PF00581 Rhodanese-like domain EEL44_00040 PF00899 ThiF family EEL44_00045 PF03453 MoeA N-terminal region (domain I and II) EEL44_00045 PF00994 Probable molybdopterin binding domain EEL44_00045 PF03454 MoeA C-terminal region (domain IV) EEL44_00050 PF01227 GTP cyclohydrolase I EEL44_00055 PF01641 SelR domain EEL44_00055 PF01625 Peptide methionine sulfoxide reductase EEL44_00060 PF01268 Formate--tetrahydrofolate ligase EEL44_00065 PF01741 Large-conductance mechanosensitive channel, MscL EEL44_00080 PF13419 Haloacid dehalogenase-like hydrolase EEL44_00085 PF01272 Transcription elongation factor, GreA/GreB, C-term EEL44_00085 PF14760 Rnk N-terminus EEL44_00090 PF13419 Haloacid dehalogenase-like hydrolase EEL44_00100 PF00266 Aminotransferase class-V EEL44_00110 PF00005 ABC transporter EEL44_00115 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_00120 PF00392 Bacterial regulatory proteins, gntR family EEL44_00120 PF07702 UTRA domain EEL44_00130 PF00854 POT family EEL44_00155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEL44_00160 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_00165 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_00165 PF12911 N-terminal TM domain of oligopeptide transport permease C EEL44_00170 PF00005 ABC transporter EEL44_00170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_00175 PF03479 Plants and Prokaryotes Conserved (PCC) domain EEL44_00175 PF12804 MobA-like NTP transferase domain EEL44_00175 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_00190 PF02798 Glutathione S-transferase, N-terminal domain EEL44_00190 PF00043 Glutathione S-transferase, C-terminal domain EEL44_00215 PF03061 Thioesterase superfamily EEL44_00225 PF12793 Sugar transport-related sRNA regulator N-term EEL44_00225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEL44_00230 PF07715 TonB-dependent Receptor Plug Domain EEL44_00230 PF00593 TonB dependent receptor EEL44_00235 PF03466 LysR substrate binding domain EEL44_00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_00240 PF00583 Acetyltransferase (GNAT) family EEL44_00240 PF13380 CoA binding domain EEL44_00240 PF13607 Succinyl-CoA ligase like flavodoxin domain EEL44_00250 PF01820 D-ala D-ala ligase N-terminus EEL44_00250 PF07478 D-ala D-ala ligase C-terminus EEL44_00260 PF01253 Translation initiation factor SUI1 EEL44_00265 PF03701 Uncharacterised protein family (UPF0181) EEL44_00280 PF00486 Transcriptional regulatory protein, C terminal EEL44_00280 PF00072 Response regulator receiver domain EEL44_00290 PF02233 NAD(P) transhydrogenase beta subunit EEL44_00295 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EEL44_00295 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EEL44_00295 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EEL44_00310 PF00990 Diguanylate cyclase, GGDEF domain EEL44_00310 PF17158 Membrane-associated sensor, integral membrane domain EEL44_00330 PF00990 Diguanylate cyclase, GGDEF domain EEL44_00330 PF17151 Periplasmic sensor domain EEL44_00365 PF03831 PhnA domain EEL44_00365 PF08274 PhnA Zinc-Ribbon EEL44_00375 PF03741 Integral membrane protein TerC family EEL44_00380 PF00149 Calcineurin-like phosphoesterase EEL44_00380 PF02872 5'-nucleotidase, C-terminal domain EEL44_00385 PF11398 Protein of unknown function (DUF2813) EEL44_00390 PF06496 Protein of unknown function (DUF1097) EEL44_00395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_00395 PF03466 LysR substrate binding domain EEL44_00400 PF01226 Formate/nitrite transporter EEL44_00405 PF04264 YceI-like domain EEL44_00410 PF01292 Prokaryotic cytochrome b561 EEL44_00420 PF00563 EAL domain EEL44_00420 PF10388 EAL-domain associated signalling protein domain EEL44_00430 PF09335 SNARE associated Golgi protein EEL44_00435 PF02416 mttA/Hcf106 family EEL44_00440 PF00072 Response regulator receiver domain EEL44_00440 PF00486 Transcriptional regulatory protein, C terminal EEL44_00445 PF13493 Domain of unknown function (DUF4118) EEL44_00445 PF00512 His Kinase A (phospho-acceptor) domain EEL44_00445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_00445 PF02702 Osmosensitive K+ channel His kinase sensor domain EEL44_00450 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg EEL44_00450 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase EEL44_00450 PF10371 Domain of unknown function EEL44_00450 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II EEL44_00450 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEL44_00455 PF02705 K+ potassium transporter EEL44_00460 PF01926 50S ribosome-binding GTPase EEL44_00465 PF07683 Cobalamin synthesis protein cobW C-terminal domain EEL44_00465 PF02492 CobW/HypB/UreG, nucleotide-binding domain EEL44_00470 PF00654 Voltage gated chloride channel EEL44_00480 PF00155 Aminotransferase class I and II EEL44_00485 PF00072 Response regulator receiver domain EEL44_00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_00490 PF13476 AAA domain EEL44_00495 PF12320 Type 5 capsule protein repressor C-terminal domain EEL44_00495 PF00149 Calcineurin-like phosphoesterase EEL44_00500 PF00356 Bacterial regulatory proteins, lacI family EEL44_00500 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EEL44_00505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEL44_00505 PF00381 PTS HPr component phosphorylation site EEL44_00510 PF00294 pfkB family carbohydrate kinase EEL44_00515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EEL44_00515 PF02378 Phosphotransferase system, EIIC EEL44_00520 PF18030 RimK PreATP-grasp domain EEL44_00520 PF08443 RimK-like ATP-grasp domain EEL44_00525 PF00155 Aminotransferase class I and II EEL44_00535 PF03477 ATP cone domain EEL44_00535 PF13597 Anaerobic ribonucleoside-triphosphate reductase EEL44_00560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_00630 PF01797 Transposase IS200 like EEL44_00645 PF07859 alpha/beta hydrolase fold EEL44_00715 PF05016 ParE toxin of type II toxin-antitoxin system, parDE EEL44_00725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_00745 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_00750 PF05598 Transposase domain (DUF772) EEL44_00750 PF01609 Transposase DDE domain EEL44_00760 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA EEL44_00765 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system EEL44_00810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_00870 PF12833 Helix-turn-helix domain EEL44_00870 PF01965 DJ-1/PfpI family EEL44_00915 PF01555 DNA methylase EEL44_00935 PF05016 ParE toxin of type II toxin-antitoxin system, parDE EEL44_00940 PF08212 Lipocalin-like domain EEL44_00965 PF17676 LD-carboxypeptidase C-terminal domain EEL44_00965 PF02016 LD-carboxypeptidase N-terminal domain EEL44_00990 PF01381 Helix-turn-helix EEL44_00995 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB EEL44_01180 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EEL44_01220 PF01810 LysE type translocator EEL44_01230 PF04229 GrpB protein EEL44_01250 PF08212 Lipocalin-like domain EEL44_01270 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_01310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_01330 PF17676 LD-carboxypeptidase C-terminal domain EEL44_01330 PF02016 LD-carboxypeptidase N-terminal domain EEL44_01415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_01445 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ EEL44_01480 PF08212 Lipocalin-like domain EEL44_01485 PF13302 Acetyltransferase (GNAT) domain EEL44_01510 PF00293 NUDIX domain EEL44_01540 PF01966 HD domain EEL44_01540 PF13286 Phosphohydrolase-associated domain EEL44_01590 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_01650 PF00589 Phage integrase family EEL44_01650 PF13495 Phage integrase, N-terminal SAM-like domain EEL44_01655 PF00453 Ribosomal protein L20 EEL44_01660 PF01632 Ribosomal protein L35 EEL44_01665 PF05198 Translation initiation factor IF-3, N-terminal domain EEL44_01665 PF00707 Translation initiation factor IF-3, C-terminal domain EEL44_01670 PF02824 TGS domain EEL44_01670 PF03129 Anticodon binding domain EEL44_01670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EEL44_01670 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EEL44_01695 PF05598 Transposase domain (DUF772) EEL44_01695 PF01609 Transposase DDE domain EEL44_01705 PF01571 Aminomethyltransferase folate-binding domain EEL44_01705 PF08669 Glycine cleavage T-protein C-terminal barrel domain EEL44_01715 PF00464 Serine hydroxymethyltransferase EEL44_01720 PF01597 Glycine cleavage H-protein EEL44_01725 PF02347 Glycine cleavage system P-protein EEL44_01735 PF01797 Transposase IS200 like EEL44_01740 PF00194 Eukaryotic-type carbonic anhydrase EEL44_01755 PF07943 Penicillin-binding protein 5, C-terminal domain EEL44_01755 PF00768 D-alanyl-D-alanine carboxypeptidase EEL44_01765 PF02743 Cache domain EEL44_01765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_01765 PF00672 HAMP domain EEL44_01770 PF07690 Major Facilitator Superfamily EEL44_01810 PF00512 His Kinase A (phospho-acceptor) domain EEL44_01810 PF00672 HAMP domain EEL44_01810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_01810 PF14827 Double sensory domain of two-component sensor kinase EEL44_01810 PF13426 PAS domain EEL44_01815 PF00072 Response regulator receiver domain EEL44_01815 PF00486 Transcriptional regulatory protein, C terminal EEL44_01835 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_01840 PF00128 Alpha amylase, catalytic domain EEL44_01845 PF01292 Prokaryotic cytochrome b561 EEL44_01855 PF00455 DeoR C terminal sensor domain EEL44_01855 PF08220 DeoR-like helix-turn-helix domain EEL44_01860 PF03611 PTS system sugar-specific permease component EEL44_01865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEL44_01870 PF00596 Class II Aldolase and Adducin N-terminal domain EEL44_01880 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EEL44_01885 PF01261 Xylose isomerase-like TIM barrel EEL44_01895 PF00072 Response regulator receiver domain EEL44_01895 PF00486 Transcriptional regulatory protein, C terminal EEL44_01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_01900 PF00512 His Kinase A (phospho-acceptor) domain EEL44_01900 PF00672 HAMP domain EEL44_01915 PF00871 Acetokinase family EEL44_01925 PF00593 TonB dependent receptor EEL44_01925 PF07715 TonB-dependent Receptor Plug Domain EEL44_01930 PF12833 Helix-turn-helix domain EEL44_01935 PF00005 ABC transporter EEL44_01940 PF01032 FecCD transport family EEL44_01945 PF01032 FecCD transport family EEL44_01965 PF05547 Immune inhibitor A peptidase M6 EEL44_01965 PF00801 PKD domain EEL44_01970 PF03280 Proteobacterial lipase chaperone protein EEL44_01975 PF00561 alpha/beta hydrolase fold EEL44_01980 PF00672 HAMP domain EEL44_01980 PF12729 Four helix bundle sensory module for signal transduction EEL44_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_01985 PF07968 Leukocidin/Hemolysin toxin family EEL44_01985 PF12563 Hemolytic toxin N terminal EEL44_01985 PF16458 Beta-prism lectin EEL44_01990 PF00657 GDSL-like Lipase/Acylhydrolase EEL44_01995 PF08448 PAS fold EEL44_01995 PF00990 Diguanylate cyclase, GGDEF domain EEL44_02005 PF07690 Major Facilitator Superfamily EEL44_02010 PF03553 Na+/H+ antiporter family EEL44_02020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_02020 PF00512 His Kinase A (phospho-acceptor) domain EEL44_02020 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEL44_02025 PF11849 Domain of unknown function (DUF3369) EEL44_02035 PF01467 Cytidylyltransferase-like EEL44_02040 PF02540 NAD synthase EEL44_02045 PF03605 Anaerobic c4-dicarboxylate membrane transporter EEL44_02050 PF00271 Helicase conserved C-terminal domain EEL44_02050 PF00270 DEAD/DEAH box helicase EEL44_02065 PF01797 Transposase IS200 like EEL44_02085 PF00145 C-5 cytosine-specific DNA methylase EEL44_02090 PF00478 IMP dehydrogenase / GMP reductase domain EEL44_02105 PF07885 Ion channel EEL44_02115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEL44_02115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEL44_02120 PF03853 YjeF-related protein N-terminus EEL44_02120 PF01256 Carbohydrate kinase EEL44_02130 PF00072 Response regulator receiver domain EEL44_02145 PF03889 Alternative ribosome-rescue factor A EEL44_02150 PF00313 'Cold-shock' DNA-binding domain EEL44_02155 PF00970 Oxidoreductase FAD-binding domain EEL44_02155 PF00175 Oxidoreductase NAD-binding domain EEL44_02155 PF00042 Globin EEL44_02160 PF00158 Sigma-54 interaction domain EEL44_02160 PF01590 GAF domain EEL44_02170 PF07687 Peptidase dimerisation domain EEL44_02170 PF01546 Peptidase family M20/M25/M40 EEL44_02175 PF07662 Na+ dependent nucleoside transporter C-terminus EEL44_02175 PF07670 Nucleoside recognition EEL44_02175 PF01773 Na+ dependent nucleoside transporter N-terminus EEL44_02190 PF00672 HAMP domain EEL44_02190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_02190 PF02743 Cache domain EEL44_02195 PF07726 ATPase family associated with various cellular activities (AAA) EEL44_02195 PF17863 AAA lid domain EEL44_02200 PF01882 Protein of unknown function DUF58 EEL44_02215 PF07584 Aerotolerance regulator N-terminal EEL44_02215 PF13519 von Willebrand factor type A domain EEL44_02230 PF00313 'Cold-shock' DNA-binding domain EEL44_02235 PF00990 Diguanylate cyclase, GGDEF domain EEL44_02235 PF00563 EAL domain EEL44_02235 PF08448 PAS fold EEL44_02245 PF12843 Putative quorum-sensing-regulated virulence factor EEL44_02255 PF01212 Beta-eliminating lyase EEL44_02260 PF03222 Tryptophan/tyrosine permease family EEL44_02265 PF00582 Universal stress protein family EEL44_02275 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EEL44_02275 PF00361 Proton-conducting membrane transporter EEL44_02275 PF13244 Domain of unknown function (DUF4040) EEL44_02275 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EEL44_02295 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EEL44_02300 PF03334 Na+/H+ antiporter subunit EEL44_02310 PF01327 Polypeptide deformylase EEL44_02315 PF00041 Fibronectin type III domain EEL44_02315 PF12561 ToxR activated gene A lipoprotein domain EEL44_02320 PF01266 FAD dependent oxidoreductase EEL44_02340 PF00072 Response regulator receiver domain EEL44_02340 PF00158 Sigma-54 interaction domain EEL44_02340 PF02954 Bacterial regulatory protein, Fis family EEL44_02345 PF02743 Cache domain EEL44_02345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_02345 PF00512 His Kinase A (phospho-acceptor) domain EEL44_02360 PF07690 Major Facilitator Superfamily EEL44_02365 PF03009 Glycerophosphoryl diester phosphodiesterase family EEL44_02375 PF01048 Phosphorylase superfamily EEL44_02385 PF00356 Bacterial regulatory proteins, lacI family EEL44_02390 PF00294 pfkB family carbohydrate kinase EEL44_02395 PF13407 Periplasmic binding protein domain EEL44_02400 PF02653 Branched-chain amino acid transport system / permease component EEL44_02405 PF00005 ABC transporter EEL44_02410 PF05025 RbsD / FucU transport protein family EEL44_02425 PF16671 Actin cross-linking domain EEL44_02425 PF04717 Type VI secretion system, phage-baseplate injector EEL44_02460 PF17871 AAA lid domain EEL44_02460 PF07724 AAA domain (Cdc48 subfamily) EEL44_02460 PF00004 ATPase family associated with various cellular activities (AAA) EEL44_02460 PF10431 C-terminal, D2-small domain, of ClpB protein EEL44_02520 PF00849 RNA pseudouridylate synthase EEL44_02525 PF01740 STAS domain EEL44_02525 PF00916 Sulfate permease family EEL44_02530 PF13419 Haloacid dehalogenase-like hydrolase EEL44_02535 PF00196 Bacterial regulatory proteins, luxR family EEL44_02535 PF00563 EAL domain EEL44_02540 PF00581 Rhodanese-like domain EEL44_02545 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EEL44_02545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EEL44_02550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EEL44_02550 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EEL44_02570 PF07504 Fungalysin/Thermolysin Propeptide Motif EEL44_02570 PF01483 Proprotein convertase P-domain EEL44_02570 PF02868 Thermolysin metallopeptidase, alpha-helical domain EEL44_02570 PF01447 Thermolysin metallopeptidase, catalytic domain EEL44_02590 PF02001 Protein of unknown function DUF134 EEL44_02600 PF00375 Sodium:dicarboxylate symporter family EEL44_02620 PF00376 MerR family regulatory protein EEL44_02620 PF09278 MerR, DNA binding EEL44_02625 PF07690 Major Facilitator Superfamily EEL44_02630 PF03466 LysR substrate binding domain EEL44_02630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_02635 PF13188 PAS domain EEL44_02635 PF00563 EAL domain EEL44_02635 PF03707 Bacterial signalling protein N terminal repeat EEL44_02635 PF00990 Diguanylate cyclase, GGDEF domain EEL44_02640 PF01551 Peptidase family M23 EEL44_02640 PF01476 LysM domain EEL44_02640 PF08525 Opacity-associated protein A N-terminal motif EEL44_02655 PF00916 Sulfate permease family EEL44_02655 PF01740 STAS domain EEL44_02680 PF00005 ABC transporter EEL44_02685 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_02690 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_02695 PF12849 PBP superfamily domain EEL44_02700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_02700 PF12729 Four helix bundle sensory module for signal transduction EEL44_02700 PF00672 HAMP domain EEL44_02720 PF00593 TonB dependent receptor EEL44_02720 PF07715 TonB-dependent Receptor Plug Domain EEL44_02725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EEL44_02725 PF00326 Prolyl oligopeptidase family EEL44_02730 PF00270 DEAD/DEAH box helicase EEL44_02730 PF00271 Helicase conserved C-terminal domain EEL44_02740 PF17969 L,D-transpeptidase C-terminal domain EEL44_02740 PF01476 LysM domain EEL44_02740 PF03734 L,D-transpeptidase catalytic domain EEL44_02745 PF00875 DNA photolyase EEL44_02745 PF03441 FAD binding domain of DNA photolyase EEL44_02750 PF13411 MerR HTH family regulatory protein EEL44_02755 PF08349 Protein of unknown function (DUF1722) EEL44_02765 PF01048 Phosphorylase superfamily EEL44_02780 PF00990 Diguanylate cyclase, GGDEF domain EEL44_02785 PF11742 Protein of unknown function (DUF3302) EEL44_02790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEL44_02790 PF00529 HlyD membrane-fusion protein of T1SS EEL44_02805 PF07238 PilZ domain EEL44_02805 PF12945 Flagellar protein YcgR EEL44_02810 PF03616 Sodium/glutamate symporter EEL44_02825 PF02630 SCO1/SenC EEL44_02835 PF00375 Sodium:dicarboxylate symporter family EEL44_02840 PF01569 PAP2 superfamily EEL44_02860 PF02743 Cache domain EEL44_02860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_02860 PF00672 HAMP domain EEL44_02880 PF08329 Chitinase A, N-terminal domain EEL44_02880 PF00704 Glycosyl hydrolases family 18 EEL44_02885 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EEL44_02890 PF00939 Sodium:sulfate symporter transmembrane region EEL44_02900 PF01757 Acyltransferase family EEL44_02900 PF00842 Alanine racemase, C-terminal domain EEL44_02900 PF01168 Alanine racemase, N-terminal domain EEL44_02925 PF16671 Actin cross-linking domain EEL44_02925 PF04717 Type VI secretion system, phage-baseplate injector EEL44_02930 PF05638 Type VI secretion system effector, Hcp EEL44_02940 PF02806 Alpha amylase, C-terminal all-beta domain EEL44_02940 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EEL44_02940 PF00128 Alpha amylase, catalytic domain EEL44_02945 PF02446 4-alpha-glucanotransferase EEL44_02950 PF00343 Carbohydrate phosphorylase EEL44_02955 PF00196 Bacterial regulatory proteins, luxR family EEL44_02955 PF17874 MalT-like TPR region EEL44_02960 PF10928 Protein of unknown function (DUF2810) EEL44_02970 PF00672 HAMP domain EEL44_02970 PF17200 Single Cache domain 2 EEL44_02970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_02975 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EEL44_02975 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EEL44_02980 PF01709 Transcriptional regulator EEL44_03010 PF18607 ParA helix turn helix domain EEL44_03010 PF13614 AAA domain EEL44_03015 PF02195 ParB-like nuclease domain EEL44_03015 PF08775 ParB family EEL44_03020 PF13416 Bacterial extracellular solute-binding protein EEL44_03025 PF13718 GNAT acetyltransferase 2 EEL44_03025 PF05127 Helicase EEL44_03035 PF00501 AMP-binding enzyme EEL44_03055 PF00486 Transcriptional regulatory protein, C terminal EEL44_03055 PF00072 Response regulator receiver domain EEL44_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_03060 PF00512 His Kinase A (phospho-acceptor) domain EEL44_03060 PF08521 Two-component sensor kinase N-terminal EEL44_03065 PF00884 Sulfatase EEL44_03065 PF08019 Phosphoethanolamine transferase EptA/EptB EEL44_03070 PF00005 ABC transporter EEL44_03070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_03075 PF12911 N-terminal TM domain of oligopeptide transport permease C EEL44_03075 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_03080 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_03095 PF00072 Response regulator receiver domain EEL44_03100 PF01627 Hpt domain EEL44_03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_03100 PF09078 CheY binding EEL44_03100 PF01584 CheW-like domain EEL44_03100 PF02895 Signal transducing histidine kinase, homodimeric domain EEL44_03105 PF01584 CheW-like domain EEL44_03110 PF01584 CheW-like domain EEL44_03115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03115 PF02203 Tar ligand binding domain homologue EEL44_03115 PF00672 HAMP domain EEL44_03120 PF03705 CheR methyltransferase, all-alpha domain EEL44_03120 PF01739 CheR methyltransferase, SAM binding domain EEL44_03125 PF03975 CheD chemotactic sensory transduction EEL44_03130 PF01339 CheB methylesterase EEL44_03130 PF00072 Response regulator receiver domain EEL44_03135 PF02743 Cache domain EEL44_03135 PF00672 HAMP domain EEL44_03135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03145 PF00486 Transcriptional regulatory protein, C terminal EEL44_03145 PF00072 Response regulator receiver domain EEL44_03155 PF00664 ABC transporter transmembrane region EEL44_03155 PF00005 ABC transporter EEL44_03155 PF03412 Peptidase C39 family EEL44_03170 PF00529 HlyD membrane-fusion protein of T1SS EEL44_03175 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EEL44_03175 PF01243 Pyridoxamine 5'-phosphate oxidase EEL44_03180 PF00072 Response regulator receiver domain EEL44_03180 PF00196 Bacterial regulatory proteins, luxR family EEL44_03185 PF03781 Sulfatase-modifying factor enzyme 1 EEL44_03195 PF12833 Helix-turn-helix domain EEL44_03200 PF14850 DNA-binding domain of Proline dehydrogenase EEL44_03200 PF01619 Proline dehydrogenase EEL44_03200 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EEL44_03200 PF00171 Aldehyde dehydrogenase family EEL44_03210 PF00474 Sodium:solute symporter family EEL44_03220 PF00672 HAMP domain EEL44_03220 PF02743 Cache domain EEL44_03220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03225 PF01037 Lrp/AsnC ligand binding domain EEL44_03230 PF00171 Aldehyde dehydrogenase family EEL44_03240 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain EEL44_03240 PF01276 Orn/Lys/Arg decarboxylase, major domain EEL44_03240 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain EEL44_03245 PF13520 Amino acid permease EEL44_03255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EEL44_03260 PF04013 Putative SAM-dependent RNA methyltransferase EEL44_03265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_03265 PF03466 LysR substrate binding domain EEL44_03270 PF00106 short chain dehydrogenase EEL44_03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03275 PF02743 Cache domain EEL44_03275 PF00672 HAMP domain EEL44_03280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_03280 PF03466 LysR substrate binding domain EEL44_03285 PF13460 NAD(P)H-binding EEL44_03315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EEL44_03320 PF05068 Mannitol repressor EEL44_03325 PF01232 Mannitol dehydrogenase Rossmann domain EEL44_03325 PF08125 Mannitol dehydrogenase C-terminal domain EEL44_03330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EEL44_03330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEL44_03330 PF02378 Phosphotransferase system, EIIC EEL44_03350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEL44_03350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEL44_03350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEL44_03350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEL44_03355 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_03360 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEL44_03365 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_03370 PF00005 ABC transporter EEL44_03375 PF00793 DAHP synthetase I family EEL44_03385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03385 PF00672 HAMP domain EEL44_03400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03400 PF00672 HAMP domain EEL44_03400 PF12729 Four helix bundle sensory module for signal transduction EEL44_03410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EEL44_03410 PF00128 Alpha amylase, catalytic domain EEL44_03415 PF02264 LamB porin EEL44_03420 PF07148 Maltose operon periplasmic protein precursor (MalM) EEL44_03430 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EEL44_03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_03450 PF03466 LysR substrate binding domain EEL44_03455 PF07681 DoxX EEL44_03460 PF06029 AlkA N-terminal domain EEL44_03460 PF00730 HhH-GPD superfamily base excision DNA repair protein EEL44_03465 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EEL44_03465 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EEL44_03475 PF03600 Citrate transporter EEL44_03480 PF07670 Nucleoside recognition EEL44_03485 PF07670 Nucleoside recognition EEL44_03490 PF00462 Glutaredoxin EEL44_03495 PF00892 EamA-like transporter family EEL44_03500 PF13609 Gram-negative porin EEL44_03505 PF02566 OsmC-like protein EEL44_03510 PF01047 MarR family EEL44_03515 PF01557 Fumarylacetoacetate (FAA) hydrolase family EEL44_03530 PF12833 Helix-turn-helix domain EEL44_03535 PF01810 LysE type translocator EEL44_03545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EEL44_03555 PF00005 ABC transporter EEL44_03555 PF00664 ABC transporter transmembrane region EEL44_03565 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EEL44_03575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_03575 PF03466 LysR substrate binding domain EEL44_03580 PF00270 DEAD/DEAH box helicase EEL44_03580 PF00271 Helicase conserved C-terminal domain EEL44_03585 PF01554 MatE EEL44_03590 PF08447 PAS fold EEL44_03590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03595 PF00391 PEP-utilising enzyme, mobile domain EEL44_03595 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EEL44_03595 PF02896 PEP-utilising enzyme, TIM barrel domain EEL44_03600 PF03618 Kinase/pyrophosphorylase EEL44_03610 PF01070 FMN-dependent dehydrogenase EEL44_03615 PF02652 L-lactate permease EEL44_03620 PF03466 LysR substrate binding domain EEL44_03620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_03635 PF13426 PAS domain EEL44_03635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03635 PF08447 PAS fold EEL44_03640 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEL44_03645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_03645 PF00005 ABC transporter EEL44_03655 PF13654 AAA domain EEL44_03655 PF05362 Lon protease (S16) C-terminal proteolytic domain EEL44_03660 PF00672 HAMP domain EEL44_03660 PF17200 Single Cache domain 2 EEL44_03660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03670 PF07690 Major Facilitator Superfamily EEL44_03680 PF06865 Pyrimidine/purine nucleoside phosphorylase EEL44_03685 PF02678 Pirin EEL44_03685 PF05726 Pirin C-terminal cupin domain EEL44_03695 PF00990 Diguanylate cyclase, GGDEF domain EEL44_03695 PF00563 EAL domain EEL44_03700 PF03466 LysR substrate binding domain EEL44_03700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_03725 PF00990 Diguanylate cyclase, GGDEF domain EEL44_03725 PF03707 Bacterial signalling protein N terminal repeat EEL44_03725 PF00563 EAL domain EEL44_03745 PF00990 Diguanylate cyclase, GGDEF domain EEL44_03750 PF01047 MarR family EEL44_03755 PF00072 Response regulator receiver domain EEL44_03755 PF01584 CheW-like domain EEL44_03765 PF00196 Bacterial regulatory proteins, luxR family EEL44_03770 PF01906 Putative heavy-metal-binding EEL44_03785 PF13302 Acetyltransferase (GNAT) domain EEL44_03790 PF00005 ABC transporter EEL44_03790 PF08402 TOBE domain EEL44_03795 PF01547 Bacterial extracellular solute-binding protein EEL44_03800 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_03800 PF14785 Maltose transport system permease protein MalF P2 domain EEL44_03805 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_03820 PF00455 DeoR C terminal sensor domain EEL44_03820 PF08220 DeoR-like helix-turn-helix domain EEL44_03825 PF00990 Diguanylate cyclase, GGDEF domain EEL44_03825 PF08448 PAS fold EEL44_03835 PF12833 Helix-turn-helix domain EEL44_03835 PF00072 Response regulator receiver domain EEL44_03855 PF00313 'Cold-shock' DNA-binding domain EEL44_03865 PF05661 Protein of unknown function (DUF808) EEL44_03870 PF05958 tRNA (Uracil-5-)-methyltransferase EEL44_03880 PF05656 Protein of unknown function (DUF805) EEL44_03890 PF01979 Amidohydrolase family EEL44_03895 PF03473 MOSC domain EEL44_03895 PF03476 MOSC N-terminal beta barrel domain EEL44_03895 PF00111 2Fe-2S iron-sulfur cluster binding domain EEL44_03895 PF03473 MOSC domain EEL44_03895 PF03476 MOSC N-terminal beta barrel domain EEL44_03895 PF00111 2Fe-2S iron-sulfur cluster binding domain EEL44_03900 PF02743 Cache domain EEL44_03900 PF00672 HAMP domain EEL44_03900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03930 PF00005 ABC transporter EEL44_03935 PF01032 FecCD transport family EEL44_03940 PF01497 Periplasmic binding protein EEL44_03945 PF02472 Biopolymer transport protein ExbD/TolR EEL44_03950 PF01618 MotA/TolQ/ExbB proton channel family EEL44_03955 PF03544 Gram-negative bacterial TonB protein C-terminal EEL44_03960 PF04055 Radical SAM superfamily EEL44_03965 PF06228 Haem utilisation ChuX/HutX EEL44_03970 PF01243 Pyridoxamine 5'-phosphate oxidase EEL44_03975 PF00672 HAMP domain EEL44_03975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_03980 PF13556 PucR C-terminal helix-turn-helix domain EEL44_03980 PF05651 Putative sugar diacid recognition EEL44_03980 PF17853 GGDEF-like domain EEL44_03985 PF02447 GntP family permease EEL44_03990 PF02595 Glycerate kinase family EEL44_04015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EEL44_04015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EEL44_04020 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EEL44_04025 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EEL44_04025 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EEL44_04030 PF01966 HD domain EEL44_04055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_04060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_04060 PF03466 LysR substrate binding domain EEL44_04080 PF00155 Aminotransferase class I and II EEL44_04085 PF00107 Zinc-binding dehydrogenase EEL44_04085 PF08240 Alcohol dehydrogenase GroES-like domain EEL44_04125 PF12167 Arm DNA-binding domain EEL44_04125 PF00589 Phage integrase family EEL44_04135 PF03466 LysR substrate binding domain EEL44_04135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_04140 PF00291 Pyridoxal-phosphate dependent enzyme EEL44_04160 PF02322 Cytochrome bd terminal oxidase subunit II EEL44_04165 PF01654 Cytochrome bd terminal oxidase subunit I EEL44_04170 PF00392 Bacterial regulatory proteins, gntR family EEL44_04170 PF00155 Aminotransferase class I and II EEL44_04175 PF00768 D-alanyl-D-alanine carboxypeptidase EEL44_04185 PF03922 OmpW family EEL44_04195 PF01447 Thermolysin metallopeptidase, catalytic domain EEL44_04195 PF04151 Bacterial pre-peptidase C-terminal domain EEL44_04195 PF02868 Thermolysin metallopeptidase, alpha-helical domain EEL44_04195 PF07504 Fungalysin/Thermolysin Propeptide Motif EEL44_04195 PF03413 Peptidase propeptide and YPEB domain EEL44_04200 PF08447 PAS fold EEL44_04200 PF13426 PAS domain EEL44_04200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_04205 PF12262 Bacterial virulence factor lipase N-terminal EEL44_04210 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EEL44_04220 PF00128 Alpha amylase, catalytic domain EEL44_04225 PF00248 Aldo/keto reductase family EEL44_04240 PF00005 ABC transporter EEL44_04245 PF00005 ABC transporter EEL44_04245 PF02687 FtsX-like permease family EEL44_04245 PF12704 MacB-like periplasmic core domain EEL44_04260 PF07694 5TMR of 5TMR-LYT EEL44_04260 PF13492 GAF domain EEL44_04260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_04260 PF06580 Histidine kinase EEL44_04265 PF00072 Response regulator receiver domain EEL44_04265 PF04397 LytTr DNA-binding domain EEL44_04275 PF00990 Diguanylate cyclase, GGDEF domain EEL44_04280 PF13520 Amino acid permease EEL44_04295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EEL44_04295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EEL44_04300 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EEL44_04305 PF02566 OsmC-like protein EEL44_04310 PF01595 Cyclin M transmembrane N-terminal domain EEL44_04310 PF03471 Transporter associated domain EEL44_04310 PF00571 CBS domain EEL44_04315 PF14602 Hexapeptide repeat of succinyl-transferase EEL44_04315 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal EEL44_04315 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_04320 PF00892 EamA-like transporter family EEL44_04330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_04330 PF03466 LysR substrate binding domain EEL44_04355 PF13193 AMP-binding enzyme C-terminal domain EEL44_04355 PF00501 AMP-binding enzyme EEL44_04360 PF00351 Biopterin-dependent aromatic amino acid hydroxylase EEL44_04365 PF01329 Pterin 4 alpha carbinolamine dehydratase EEL44_04370 PF00583 Acetyltransferase (GNAT) family EEL44_04375 PF00202 Aminotransferase class-III EEL44_04380 PF06339 Ectoine synthase EEL44_04385 PF00696 Amino acid kinase family EEL44_04385 PF13840 ACT domain EEL44_04395 PF00118 TCP-1/cpn60 chaperonin family EEL44_04400 PF00166 Chaperonin 10 Kd subunit EEL44_04405 PF01769 Divalent cation transporter EEL44_04405 PF00571 CBS domain EEL44_04405 PF03448 MgtE intracellular N domain EEL44_04415 PF17944 Arginine decarboxylase C-terminal helical extension EEL44_04415 PF17810 Arginine decarboxylase helical bundle domain EEL44_04415 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EEL44_04420 PF00491 Arginase family EEL44_04425 PF04151 Bacterial pre-peptidase C-terminal domain EEL44_04425 PF04389 Peptidase family M28 EEL44_04430 PF04151 Bacterial pre-peptidase C-terminal domain EEL44_04430 PF07504 Fungalysin/Thermolysin Propeptide Motif EEL44_04430 PF03413 Peptidase propeptide and YPEB domain EEL44_04430 PF02868 Thermolysin metallopeptidase, alpha-helical domain EEL44_04430 PF01447 Thermolysin metallopeptidase, catalytic domain EEL44_04435 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EEL44_04435 PF18416 N-acetylglucosamine binding protein domain 2 EEL44_04440 PF04244 Deoxyribodipyrimidine photo-lyase-related protein EEL44_04445 PF01575 MaoC like domain EEL44_04450 PF12849 PBP superfamily domain EEL44_04460 PF00575 S1 RNA binding domain EEL44_04460 PF00773 RNB domain EEL44_04460 PF08206 Ribonuclease B OB domain EEL44_04465 PF00271 Helicase conserved C-terminal domain EEL44_04465 PF00270 DEAD/DEAH box helicase EEL44_04465 PF03880 DbpA RNA binding domain EEL44_04475 PF00884 Sulfatase EEL44_04480 PF00294 pfkB family carbohydrate kinase EEL44_04495 PF13419 Haloacid dehalogenase-like hydrolase EEL44_04505 PF02796 Helix-turn-helix domain of resolvase EEL44_04505 PF00239 Resolvase, N terminal domain EEL44_04535 PF00226 DnaJ domain EEL44_04535 PF00684 DnaJ central domain EEL44_04535 PF01556 DnaJ C terminal domain EEL44_04550 PF00563 EAL domain EEL44_04550 PF00498 FHA domain EEL44_04550 PF00990 Diguanylate cyclase, GGDEF domain EEL44_04555 PF07055 Enoyl reductase FAD binding domain EEL44_04555 PF12241 Trans-2-enoyl-CoA reductase catalytic region EEL44_04555 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase EEL44_04560 PF13472 GDSL-like Lipase/Acylhydrolase family EEL44_04565 PF00005 ABC transporter EEL44_04575 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EEL44_04575 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EEL44_04585 PF02626 Carboxyltransferase domain, subdomain A and B EEL44_04595 PF03746 LamB/YcsF family EEL44_04605 PF16363 GDP-mannose 4,6 dehydratase EEL44_04610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_04610 PF12729 Four helix bundle sensory module for signal transduction EEL44_04610 PF00672 HAMP domain EEL44_04615 PF03222 Tryptophan/tyrosine permease family EEL44_04625 PF04336 Acyl carrier protein phosphodiesterase EEL44_04630 PF00270 DEAD/DEAH box helicase EEL44_04630 PF00271 Helicase conserved C-terminal domain EEL44_04635 PF08361 MAATS-type transcriptional repressor, C-terminal region EEL44_04635 PF00440 Bacterial regulatory proteins, tetR family EEL44_04640 PF00034 Cytochrome c EEL44_04645 PF01212 Beta-eliminating lyase EEL44_04650 PF00293 NUDIX domain EEL44_04655 PF07728 AAA domain (dynein-related subfamily) EEL44_04655 PF12592 Protein of unknown function (DUF3763) EEL44_04655 PF17868 AAA lid domain EEL44_04660 PF05762 VWA domain containing CoxE-like protein EEL44_04670 PF00005 ABC transporter EEL44_04675 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEL44_04680 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_04685 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_04690 PF03466 LysR substrate binding domain EEL44_04715 PF07690 Major Facilitator Superfamily EEL44_04720 PF00085 Thioredoxin EEL44_04725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EEL44_04725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EEL44_04730 PF02754 Cysteine-rich domain EEL44_04730 PF13183 4Fe-4S dicluster domain EEL44_04735 PF00890 FAD binding domain EEL44_04740 PF04324 BFD-like [2Fe-2S] binding domain EEL44_04740 PF01266 FAD dependent oxidoreductase EEL44_04745 PF00230 Major intrinsic protein EEL44_04750 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EEL44_04750 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EEL44_04765 PF04363 Protein of unknown function (DUF496) EEL44_04775 PF04337 Protein of unknown function, DUF480 EEL44_04780 PF01541 GIY-YIG catalytic domain EEL44_04790 PF13407 Periplasmic binding protein domain EEL44_04795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_04795 PF09308 LuxQ, periplasmic EEL44_04795 PF00512 His Kinase A (phospho-acceptor) domain EEL44_04795 PF00072 Response regulator receiver domain EEL44_04840 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EEL44_04840 PF07685 CobB/CobQ-like glutamine amidotransferase domain EEL44_04850 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_04855 PF03459 TOBE domain EEL44_04855 PF00005 ABC transporter EEL44_04880 PF00072 Response regulator receiver domain EEL44_04880 PF13188 PAS domain EEL44_04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_04880 PF00512 His Kinase A (phospho-acceptor) domain EEL44_04880 PF08448 PAS fold EEL44_04885 PF12805 FUSC-like inner membrane protein yccS EEL44_04890 PF13361 UvrD-like helicase C-terminal domain EEL44_04890 PF00580 UvrD/REP helicase N-terminal domain EEL44_04890 PF12462 DNA helicase IV / RNA helicase N terminal EEL44_04905 PF01219 Prokaryotic diacylglycerol kinase EEL44_04910 PF00857 Isochorismatase family EEL44_04915 PF02142 MGS-like domain EEL44_04920 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EEL44_04925 PF00072 Response regulator receiver domain EEL44_04925 PF00672 HAMP domain EEL44_04925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_04925 PF00512 His Kinase A (phospho-acceptor) domain EEL44_04925 PF01627 Hpt domain EEL44_04930 PF02887 Pyruvate kinase, alpha/beta domain EEL44_04930 PF00224 Pyruvate kinase, barrel domain EEL44_04935 PF07690 Major Facilitator Superfamily EEL44_04945 PF00512 His Kinase A (phospho-acceptor) domain EEL44_04945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_04945 PF02743 Cache domain EEL44_04950 PF14532 Sigma-54 interaction domain EEL44_04950 PF00072 Response regulator receiver domain EEL44_04950 PF02954 Bacterial regulatory protein, Fis family EEL44_04960 PF00465 Iron-containing alcohol dehydrogenase EEL44_04965 PF06483 Chitinase C EEL44_04965 PF00704 Glycosyl hydrolases family 18 EEL44_04970 PF00483 Nucleotidyl transferase EEL44_04975 PF17158 Membrane-associated sensor, integral membrane domain EEL44_04975 PF00990 Diguanylate cyclase, GGDEF domain EEL44_04990 PF07549 SecD/SecF GG Motif EEL44_04990 PF02355 Protein export membrane protein EEL44_04990 PF13721 SecD export protein N-terminal TM region EEL44_04995 PF02355 Protein export membrane protein EEL44_04995 PF07549 SecD/SecF GG Motif EEL44_05000 PF00106 short chain dehydrogenase EEL44_05005 PF02803 Thiolase, C-terminal domain EEL44_05005 PF00108 Thiolase, N-terminal domain EEL44_05015 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus EEL44_05020 PF08402 TOBE domain EEL44_05020 PF00005 ABC transporter EEL44_05025 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_05035 PF07690 Major Facilitator Superfamily EEL44_05040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_05040 PF07730 Histidine kinase EEL44_05040 PF05231 MASE1 EEL44_05045 PF00196 Bacterial regulatory proteins, luxR family EEL44_05045 PF00072 Response regulator receiver domain EEL44_05050 PF01966 HD domain EEL44_05060 PF03264 NapC/NirT cytochrome c family, N-terminal region EEL44_05065 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) EEL44_05070 PF01568 Molydopterin dinucleotide binding domain EEL44_05070 PF00384 Molybdopterin oxidoreductase EEL44_05070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EEL44_05080 PF13187 4Fe-4S dicluster domain EEL44_05080 PF12838 4Fe-4S dicluster domain EEL44_05085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_05085 PF07730 Histidine kinase EEL44_05085 PF00672 HAMP domain EEL44_05085 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term EEL44_05090 PF00072 Response regulator receiver domain EEL44_05090 PF00196 Bacterial regulatory proteins, luxR family EEL44_05095 PF00356 Bacterial regulatory proteins, lacI family EEL44_05110 PF00474 Sodium:solute symporter family EEL44_05115 PF03313 Serine dehydratase alpha chain EEL44_05115 PF03315 Serine dehydratase beta chain EEL44_05120 PF03606 C4-dicarboxylate anaerobic carrier EEL44_05130 PF12729 Four helix bundle sensory module for signal transduction EEL44_05130 PF00672 HAMP domain EEL44_05130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_05135 PF13419 Haloacid dehalogenase-like hydrolase EEL44_05140 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EEL44_05140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEL44_05145 PF00691 OmpA family EEL44_05145 PF13488 Glycine zipper EEL44_05150 PF00672 HAMP domain EEL44_05150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_05155 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EEL44_05155 PF01266 FAD dependent oxidoreductase EEL44_05160 PF00294 pfkB family carbohydrate kinase EEL44_05165 PF08244 Glycosyl hydrolases family 32 C terminal EEL44_05165 PF00251 Glycosyl hydrolases family 32 N-terminal domain EEL44_05175 PF00367 phosphotransferase system, EIIB EEL44_05175 PF02378 Phosphotransferase system, EIIC EEL44_05220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEL44_05220 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_05235 PF04143 Sulphur transport EEL44_05250 PF00873 AcrB/AcrD/AcrF family EEL44_05265 PF03992 Antibiotic biosynthesis monooxygenase EEL44_05270 PF03466 LysR substrate binding domain EEL44_05270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_05280 PF06942 GlpM protein EEL44_05295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEL44_05295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEL44_05305 PF07517 SecA DEAD-like domain EEL44_05305 PF01043 SecA preprotein cross-linking domain EEL44_05305 PF02810 SEC-C motif EEL44_05305 PF07516 SecA Wing and Scaffold domain EEL44_05335 PF01252 Signal peptidase (SPase) II EEL44_05345 PF13411 MerR HTH family regulatory protein EEL44_05385 PF01131 DNA topoisomerase EEL44_05385 PF01751 Toprim domain EEL44_05475 PF10411 Disulfide bond isomerase protein N-terminus EEL44_05475 PF13098 Thioredoxin-like domain EEL44_05500 PF00563 EAL domain EEL44_05500 PF13185 GAF domain EEL44_05500 PF00990 Diguanylate cyclase, GGDEF domain EEL44_05505 PF06834 TraU protein EEL44_05545 PF00436 Single-strand binding protein family EEL44_05600 PF00111 2Fe-2S iron-sulfur cluster binding domain EEL44_05770 PF00589 Phage integrase family EEL44_05770 PF02899 Phage integrase, N-terminal SAM-like domain EEL44_05925 PF01343 Peptidase family S49 EEL44_05970 PF00565 Staphylococcal nuclease homologue EEL44_05975 PF00216 Bacterial DNA-binding protein EEL44_06035 PF13610 DDE domain EEL44_06050 PF00589 Phage integrase family EEL44_06065 PF07690 Major Facilitator Superfamily EEL44_06075 PF02909 Tetracyclin repressor-like, C-terminal domain EEL44_06075 PF00440 Bacterial regulatory proteins, tetR family EEL44_06085 PF13610 DDE domain EEL44_06105 PF02687 FtsX-like permease family EEL44_06105 PF00005 ABC transporter EEL44_06105 PF12704 MacB-like periplasmic core domain EEL44_06110 PF12704 MacB-like periplasmic core domain EEL44_06110 PF02687 FtsX-like permease family EEL44_06110 PF00005 ABC transporter EEL44_06115 PF02687 FtsX-like permease family EEL44_06115 PF00005 ABC transporter EEL44_06115 PF12704 MacB-like periplasmic core domain EEL44_06125 PF10634 Fe2+ transport protein EEL44_06130 PF03239 Iron permease FTR1 family EEL44_06140 PF04205 FMN-binding domain EEL44_06145 PF00578 AhpC/TSA family EEL44_06180 PF00440 Bacterial regulatory proteins, tetR family EEL44_06185 PF07690 Major Facilitator Superfamily EEL44_06190 PF02909 Tetracyclin repressor-like, C-terminal domain EEL44_06190 PF00440 Bacterial regulatory proteins, tetR family EEL44_06205 PF05598 Transposase domain (DUF772) EEL44_06205 PF01609 Transposase DDE domain EEL44_06225 PF00302 Chloramphenicol acetyltransferase EEL44_06235 PF01526 Tn3 transposase DDE domain EEL44_06235 PF13700 Domain of unknown function (DUF4158) EEL44_06240 PF02796 Helix-turn-helix domain of resolvase EEL44_06240 PF00239 Resolvase, N terminal domain EEL44_06255 PF13610 DDE domain EEL44_06260 PF02796 Helix-turn-helix domain of resolvase EEL44_06260 PF00239 Resolvase, N terminal domain EEL44_06285 PF01636 Phosphotransferase enzyme family EEL44_06290 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase EEL44_06300 PF00665 Integrase core domain EEL44_06315 PF13610 DDE domain EEL44_06325 PF00589 Phage integrase family EEL44_06325 PF13495 Phage integrase, N-terminal SAM-like domain EEL44_06330 PF00186 Dihydrofolate reductase EEL44_06335 PF00893 Small Multidrug Resistance protein EEL44_06340 PF00809 Pterin binding enzyme EEL44_06360 PF13610 DDE domain EEL44_06380 PF00239 Resolvase, N terminal domain EEL44_06380 PF02796 Helix-turn-helix domain of resolvase EEL44_06400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEL44_06400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEL44_06400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEL44_06400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEL44_06405 PF00809 Pterin binding enzyme EEL44_06420 PF13614 AAA domain EEL44_06425 PF08535 KorB domain EEL44_06425 PF06613 KorB C-terminal beta-barrel domain EEL44_06425 PF02195 ParB-like nuclease domain EEL44_06470 PF11638 DnaA N-terminal domain EEL44_06470 PF00308 Bacterial dnaA protein EEL44_06470 PF08299 Bacterial dnaA protein helix-turn-helix EEL44_06475 PF00712 DNA polymerase III beta subunit, N-terminal domain EEL44_06475 PF02767 DNA polymerase III beta subunit, central domain EEL44_06475 PF02768 DNA polymerase III beta subunit, C-terminal domain EEL44_06480 PF02463 RecF/RecN/SMC N terminal domain EEL44_06485 PF00204 DNA gyrase B EEL44_06485 PF00986 DNA gyrase B subunit, carboxyl terminus EEL44_06485 PF18053 DNA gyrase B subunit insert domain EEL44_06485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_06485 PF01751 Toprim domain EEL44_06500 PF00011 Hsp20/alpha crystallin family EEL44_06505 PF00155 Aminotransferase class I and II EEL44_06515 PF02092 Glycyl-tRNA synthetase beta subunit EEL44_06515 PF05746 DALR anticodon binding domain EEL44_06520 PF02091 Glycyl-tRNA synthetase alpha subunit EEL44_06525 PF01169 Uncharacterized protein family UPF0016 EEL44_06540 PF01206 Sulfurtransferase TusA EEL44_06550 PF00107 Zinc-binding dehydrogenase EEL44_06550 PF08240 Alcohol dehydrogenase GroES-like domain EEL44_06555 PF00585 C-terminal regulatory domain of Threonine dehydratase EEL44_06555 PF00291 Pyridoxal-phosphate dependent enzyme EEL44_06560 PF00920 Dehydratase family EEL44_06565 PF01063 Amino-transferase class IV EEL44_06575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEL44_06575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EEL44_06575 PF00205 Thiamine pyrophosphate enzyme, central domain EEL44_06580 PF13335 Magnesium chelatase, subunit ChlI C-terminal EEL44_06580 PF01078 Magnesium chelatase, subunit ChlI EEL44_06585 PF01553 Acyltransferase EEL44_06590 PF01323 DSBA-like thioredoxin domain EEL44_06595 PF01636 Phosphotransferase enzyme family EEL44_06600 PF12801 4Fe-4S binding domain EEL44_06600 PF13746 4Fe-4S dicluster domain EEL44_06600 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EEL44_06605 PF06288 Protein of unknown function (DUF1040) EEL44_06615 PF07070 SpoOM protein EEL44_06620 PF03006 Haemolysin-III related EEL44_06630 PF02386 Cation transport protein EEL44_06635 PF02080 TrkA-C domain EEL44_06635 PF02254 TrkA-N domain EEL44_06640 PF01029 NusB family EEL44_06640 PF01189 16S rRNA methyltransferase RsmB/F EEL44_06645 PF00551 Formyl transferase EEL44_06645 PF02911 Formyl transferase, C-terminal domain EEL44_06650 PF01327 Polypeptide deformylase EEL44_06655 PF01476 LysM domain EEL44_06660 PF17782 DprA winged helix domain EEL44_06660 PF02481 DNA recombination-mediator protein A EEL44_06665 PF04361 Protein of unknown function (DUF494) EEL44_06670 PF01396 Topoisomerase DNA binding C4 zinc finger EEL44_06675 PF02222 ATP-grasp domain EEL44_06675 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EEL44_06680 PF00731 AIR carboxylase EEL44_06685 PF01300 Telomere recombination EEL44_06690 PF01218 Coproporphyrinogen III oxidase EEL44_06695 PF08501 Shikimate dehydrogenase substrate binding domain EEL44_06695 PF01488 Shikimate / quinate 5-dehydrogenase EEL44_06695 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EEL44_06705 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_06745 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EEL44_06750 PF13667 ThiC-associated domain EEL44_06750 PF01964 Radical SAM ThiC family EEL44_06755 PF02581 Thiamine monophosphate synthase EEL44_06760 PF00899 ThiF family EEL44_06765 PF02597 ThiS family EEL44_06770 PF05690 Thiazole biosynthesis protein ThiG EEL44_06775 PF06968 Biotin and Thiamin Synthesis associated domain EEL44_06775 PF04055 Radical SAM superfamily EEL44_06780 PF01321 Creatinase/Prolidase N-terminal domain EEL44_06780 PF00557 Metallopeptidase family M24 EEL44_06780 PF01321 Creatinase/Prolidase N-terminal domain EEL44_06780 PF00557 Metallopeptidase family M24 EEL44_06785 PF03466 LysR substrate binding domain EEL44_06785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_06790 PF07690 Major Facilitator Superfamily EEL44_06800 PF01037 Lrp/AsnC ligand binding domain EEL44_06805 PF00563 EAL domain EEL44_06805 PF00990 Diguanylate cyclase, GGDEF domain EEL44_06805 PF08448 PAS fold EEL44_06810 PF04445 Putative SAM-dependent methyltransferase EEL44_06820 PF00892 EamA-like transporter family EEL44_06825 PF00582 Universal stress protein family EEL44_06835 PF00210 Ferritin-like domain EEL44_06840 PF10625 Universal stress protein B (UspB) EEL44_06855 PF02646 RmuC family EEL44_06860 PF01209 ubiE/COQ5 methyltransferase family EEL44_06865 PF02036 SCP-2 sterol transfer family EEL44_06870 PF03109 ABC1 family EEL44_06875 PF02416 mttA/Hcf106 family EEL44_06880 PF02416 mttA/Hcf106 family EEL44_06885 PF00902 Sec-independent protein translocase protein (TatC) EEL44_06890 PF00034 Cytochrome c EEL44_06890 PF03150 Di-haem cytochrome c peroxidase EEL44_06895 PF01554 MatE EEL44_06905 PF01726 LexA DNA binding domain EEL44_06905 PF00717 Peptidase S24-like EEL44_06915 PF01553 Acyltransferase EEL44_06920 PF01040 UbiA prenyltransferase family EEL44_06925 PF04345 Chorismate lyase EEL44_06935 PF03748 Flagellar basal body-associated protein FliL EEL44_06940 PF00672 HAMP domain EEL44_06940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_06940 PF02203 Tar ligand binding domain homologue EEL44_06945 PF01694 Rhomboid family EEL44_06945 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease EEL44_06950 PF00581 Rhodanese-like domain EEL44_06960 PF01026 TatD related DNase EEL44_06965 PF00490 Delta-aminolevulinic acid dehydratase EEL44_06975 PF01612 3'-5' exonuclease EEL44_06975 PF00476 DNA polymerase family A EEL44_06975 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EEL44_06975 PF01367 5'-3' exonuclease, C-terminal SAM fold EEL44_06980 PF01926 50S ribosome-binding GTPase EEL44_06985 PF00034 Cytochrome c EEL44_06995 PF04220 Der GTPase activator (YihI) EEL44_07000 PF10675 Protein of unknown function (DUF2489) EEL44_07005 PF06969 HemN C-terminal domain EEL44_07005 PF04055 Radical SAM superfamily EEL44_07010 PF07219 HemY protein N-terminus EEL44_07015 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase EEL44_07020 PF02602 Uroporphyrinogen-III synthase HemD EEL44_07025 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EEL44_07025 PF03900 Porphobilinogen deaminase, C-terminal domain EEL44_07035 PF01295 Adenylate cyclase, class-I EEL44_07035 PF12633 Adenylate cyclase NT domain EEL44_07040 PF01491 Frataxin-like domain EEL44_07050 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EEL44_07050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EEL44_07055 PF01678 Diaminopimelate epimerase EEL44_07060 PF04340 Protein of unknown function, DUF484 EEL44_07065 PF02899 Phage integrase, N-terminal SAM-like domain EEL44_07065 PF00589 Phage integrase family EEL44_07070 PF13419 Haloacid dehalogenase-like hydrolase EEL44_07075 PF08495 FIST N domain EEL44_07075 PF10442 FIST C domain EEL44_07075 PF00563 EAL domain EEL44_07075 PF00990 Diguanylate cyclase, GGDEF domain EEL44_07100 PF12146 Serine aminopeptidase, S33 EEL44_07105 PF01810 LysE type translocator EEL44_07110 PF08668 HDOD domain EEL44_07110 PF00563 EAL domain EEL44_07115 PF00210 Ferritin-like domain EEL44_07160 PF02881 SRP54-type protein, helical bundle domain EEL44_07160 PF00448 SRP54-type protein, GTPase domain EEL44_07165 PF00005 ABC transporter EEL44_07170 PF18075 FtsX extracellular domain EEL44_07175 PF00140 Sigma-70 factor, region 1.2 EEL44_07175 PF04542 Sigma-70 region 2 EEL44_07175 PF04545 Sigma-70, region 4 EEL44_07185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEL44_07185 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_07195 PF00440 Bacterial regulatory proteins, tetR family EEL44_07205 PF05958 tRNA (Uracil-5-)-methyltransferase EEL44_07210 PF00593 TonB dependent receptor EEL44_07210 PF07715 TonB-dependent Receptor Plug Domain EEL44_07215 PF04151 Bacterial pre-peptidase C-terminal domain EEL44_07215 PF00082 Subtilase family EEL44_07215 PF05922 Peptidase inhibitor I9 EEL44_07220 PF01177 Asp/Glu/Hydantoin racemase EEL44_07290 PF00962 Adenosine/AMP deaminase EEL44_07295 PF00563 EAL domain EEL44_07295 PF00990 Diguanylate cyclase, GGDEF domain EEL44_07295 PF03707 Bacterial signalling protein N terminal repeat EEL44_07295 PF13188 PAS domain EEL44_07300 PF02954 Bacterial regulatory protein, Fis family EEL44_07300 PF00072 Response regulator receiver domain EEL44_07300 PF00158 Sigma-54 interaction domain EEL44_07305 PF00989 PAS fold EEL44_07305 PF00512 His Kinase A (phospho-acceptor) domain EEL44_07305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_07315 PF00120 Glutamine synthetase, catalytic domain EEL44_07315 PF03951 Glutamine synthetase, beta-Grasp domain EEL44_07330 PF03668 P-loop ATPase protein family EEL44_07335 PF03631 Virulence factor BrkB EEL44_07340 PF02580 D-Tyr-tRNA(Tyr) deacylase EEL44_07345 PF00583 Acetyltransferase (GNAT) family EEL44_07345 PF09500 Putative thioesterase (yiiD_Cterm) EEL44_07355 PF01293 Phosphoenolpyruvate carboxykinase EEL44_07360 PF01430 Hsp33 protein EEL44_07365 PF01479 S4 domain EEL44_07370 PF11356 Type II secretion system protein C EEL44_07375 PF03958 Bacterial type II/III secretion system short domain EEL44_07375 PF00263 Bacterial type II and III secretion system protein EEL44_07380 PF00437 Type II/IV secretion system protein EEL44_07385 PF00482 Type II secretion system (T2SS), protein F EEL44_07390 PF07963 Prokaryotic N-terminal methylation motif EEL44_07390 PF08334 Type II secretion system (T2SS), protein G EEL44_07395 PF12019 Type II transport protein GspH EEL44_07400 PF07963 Prokaryotic N-terminal methylation motif EEL44_07400 PF02501 Type II secretion system (T2SS), protein I EEL44_07405 PF07963 Prokaryotic N-terminal methylation motif EEL44_07405 PF11612 Type II secretion system (T2SS), protein J EEL44_07410 PF03934 Type II secretion system (T2SS), protein K EEL44_07415 PF05134 Type II secretion system (T2SS), protein L EEL44_07415 PF12693 GspL periplasmic domain EEL44_07420 PF04612 Type II secretion system (T2SS), protein M EEL44_07425 PF01203 Type II secretion system (T2SS), protein N EEL44_07430 PF00459 Inositol monophosphatase family EEL44_07435 PF00293 NUDIX domain EEL44_07440 PF01106 NifU-like domain EEL44_07440 PF01521 Iron-sulphur cluster biosynthesis EEL44_07445 PF00156 Phosphoribosyl transferase domain EEL44_07450 PF00561 alpha/beta hydrolase fold EEL44_07460 PF17674 HHH domain EEL44_07460 PF00575 S1 RNA binding domain EEL44_07460 PF16921 Tex protein YqgF-like domain EEL44_07460 PF09371 Tex-like protein N-terminal domain EEL44_07465 PF01272 Transcription elongation factor, GreA/GreB, C-term EEL44_07465 PF03449 Transcription elongation factor, N-terminal EEL44_07470 PF00072 Response regulator receiver domain EEL44_07470 PF00486 Transcriptional regulatory protein, C terminal EEL44_07475 PF00672 HAMP domain EEL44_07475 PF00512 His Kinase A (phospho-acceptor) domain EEL44_07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_07480 PF00860 Permease family EEL44_07485 PF17191 RecG wedge domain EEL44_07485 PF00271 Helicase conserved C-terminal domain EEL44_07485 PF00270 DEAD/DEAH box helicase EEL44_07490 PF02824 TGS domain EEL44_07490 PF04607 Region found in RelA / SpoT proteins EEL44_07490 PF13291 ACT domain EEL44_07495 PF01192 RNA polymerase Rpb6 EEL44_07500 PF00625 Guanylate kinase EEL44_07505 PF02592 Putative vitamin uptake transporter EEL44_07510 PF00474 Sodium:solute symporter family EEL44_07520 PF03471 Transporter associated domain EEL44_07520 PF00999 Sodium/hydrogen exchanger family EEL44_07520 PF02080 TrkA-C domain EEL44_07525 PF00072 Response regulator receiver domain EEL44_07525 PF00196 Bacterial regulatory proteins, luxR family EEL44_07530 PF11412 Disulphide bond corrector protein DsbC EEL44_07530 PF02683 Cytochrome C biogenesis protein transmembrane region EEL44_07540 PF03605 Anaerobic c4-dicarboxylate membrane transporter EEL44_07545 PF10415 Fumarase C C-terminus EEL44_07545 PF00206 Lyase EEL44_07550 PF17158 Membrane-associated sensor, integral membrane domain EEL44_07550 PF00990 Diguanylate cyclase, GGDEF domain EEL44_07555 PF04186 FxsA cytoplasmic membrane protein EEL44_07560 PF00588 SpoU rRNA Methylase family EEL44_07565 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EEL44_07565 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EEL44_07570 PF00672 HAMP domain EEL44_07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_07570 PF00512 His Kinase A (phospho-acceptor) domain EEL44_07570 PF16527 Two-component sensor protein CpxA, periplasmic domain EEL44_07575 PF00072 Response regulator receiver domain EEL44_07575 PF00486 Transcriptional regulatory protein, C terminal EEL44_07585 PF16916 Dimerisation domain of Zinc Transporter EEL44_07585 PF01545 Cation efflux family EEL44_07590 PF00365 Phosphofructokinase EEL44_07595 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded EEL44_07600 PF06005 Cell division protein ZapB EEL44_07605 PF02219 Methylenetetrahydrofolate reductase EEL44_07610 PF00696 Amino acid kinase family EEL44_07610 PF00742 Homoserine dehydrogenase EEL44_07610 PF03447 Homoserine dehydrogenase, NAD binding domain EEL44_07615 PF01053 Cys/Met metabolism PLP-dependent enzyme EEL44_07620 PF01340 Met Apo-repressor, MetJ EEL44_07625 PF00390 Malic enzyme, N-terminal domain EEL44_07625 PF03949 Malic enzyme, NAD binding domain EEL44_07630 PF01197 Ribosomal protein L31 EEL44_07635 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EEL44_07635 PF18074 Primosomal protein N C-terminal domain EEL44_07635 PF17764 3′ DNA-binding domain (3′BD) EEL44_07635 PF00271 Helicase conserved C-terminal domain EEL44_07635 PF00270 DEAD/DEAH box helicase EEL44_07640 PF00356 Bacterial regulatory proteins, lacI family EEL44_07645 PF05036 Sporulation related domain EEL44_07650 PF00227 Proteasome subunit EEL44_07655 PF10431 C-terminal, D2-small domain, of ClpB protein EEL44_07655 PF07724 AAA domain (Cdc48 subfamily) EEL44_07655 PF00004 ATPase family associated with various cellular activities (AAA) EEL44_07660 PF01040 UbiA prenyltransferase family EEL44_07665 PF03737 Aldolase/RraA EEL44_07675 PF00121 Triosephosphate isomerase EEL44_07700 PF00455 DeoR C terminal sensor domain EEL44_07700 PF08220 DeoR-like helix-turn-helix domain EEL44_07705 PF00166 Chaperonin 10 Kd subunit EEL44_07710 PF00118 TCP-1/cpn60 chaperonin family EEL44_07720 PF04055 Radical SAM superfamily EEL44_07725 PF01132 Elongation factor P (EF-P) OB domain EEL44_07725 PF09285 Elongation factor P, C-terminal EEL44_07725 PF08207 Elongation factor P (EF-P) KOW-like domain EEL44_07730 PF02313 Fumarate reductase subunit D EEL44_07735 PF02300 Fumarate reductase subunit C EEL44_07740 PF13183 4Fe-4S dicluster domain EEL44_07740 PF13085 2Fe-2S iron-sulfur cluster binding domain EEL44_07745 PF00890 FAD binding domain EEL44_07745 PF02910 Fumarate reductase flavoprotein C-term EEL44_07750 PF00152 tRNA synthetases class II (D, K and N) EEL44_07755 PF00581 Rhodanese-like domain EEL44_07760 PF02556 Preprotein translocase subunit SecB EEL44_07765 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EEL44_07765 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EEL44_07770 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_07770 PF06426 Serine acetyltransferase, N-terminal EEL44_07780 PF00311 Phosphoenolpyruvate carboxylase EEL44_07785 PF01546 Peptidase family M20/M25/M40 EEL44_07785 PF07687 Peptidase dimerisation domain EEL44_07790 PF01118 Semialdehyde dehydrogenase, NAD binding domain EEL44_07790 PF02774 Semialdehyde dehydrogenase, dimerisation domain EEL44_07795 PF00696 Amino acid kinase family EEL44_07800 PF00764 Arginosuccinate synthase EEL44_07805 PF00206 Lyase EEL44_07805 PF14698 Argininosuccinate lyase C-terminal EEL44_07815 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_07815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEL44_07820 PF08534 Redoxin EEL44_07820 PF00462 Glutaredoxin EEL44_07825 PF03466 LysR substrate binding domain EEL44_07825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_07830 PF00912 Transglycosylase EEL44_07830 PF00905 Penicillin binding protein transpeptidase domain EEL44_07830 PF17092 Penicillin-binding protein OB-like domain EEL44_07855 PF03958 Bacterial type II/III secretion system short domain EEL44_07855 PF11741 AMIN domain EEL44_07855 PF00263 Bacterial type II and III secretion system protein EEL44_07855 PF07660 Secretin and TonB N terminus short domain EEL44_07860 PF01202 Shikimate kinase EEL44_07865 PF01761 3-dehydroquinate synthase EEL44_07875 PF02086 D12 class N6 adenine-specific DNA methyltransferase EEL44_07880 PF00834 Ribulose-phosphate 3 epimerase family EEL44_07885 PF13419 Haloacid dehalogenase-like hydrolase EEL44_07890 PF00579 tRNA synthetases class I (W and Y) EEL44_07905 PF00919 Uncharacterized protein family UPF0004 EEL44_07905 PF18693 TRAM domain EEL44_07905 PF04055 Radical SAM superfamily EEL44_07910 PF00117 Glutamine amidotransferase class-I EEL44_07915 PF00202 Aminotransferase class-III EEL44_07920 PF04958 Arginine N-succinyltransferase beta subunit EEL44_07925 PF00171 Aldehyde dehydrogenase family EEL44_07935 PF13545 Crp-like helix-turn-helix domain EEL44_07935 PF00027 Cyclic nucleotide-binding domain EEL44_07940 PF00485 Phosphoribulokinase / Uridine kinase family EEL44_07945 PF06794 Uncharacterised protein family (UPF0270) EEL44_07950 PF00561 alpha/beta hydrolase fold EEL44_07960 PF00005 ABC transporter EEL44_07960 PF12848 ABC transporter EEL44_07965 PF02525 Flavodoxin-like fold EEL44_07970 PF02254 TrkA-N domain EEL44_07970 PF00999 Sodium/hydrogen exchanger family EEL44_07980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEL44_07985 PF01112 Asparaginase EEL44_07990 PF00709 Adenylosuccinate synthetase EEL44_08000 PF08238 Sel1 repeat EEL44_08005 PF00884 Sulfatase EEL44_08005 PF11893 Domain of unknown function (DUF3413) EEL44_08010 PF08206 Ribonuclease B OB domain EEL44_08010 PF00773 RNB domain EEL44_08010 PF00575 S1 RNA binding domain EEL44_08010 PF17876 Cold shock domain EEL44_08010 PF08461 Ribonuclease R winged-helix domain EEL44_08015 PF00588 SpoU rRNA Methylase family EEL44_08015 PF08032 RNA 2'-O ribose methyltransferase substrate binding EEL44_08020 PF00338 Ribosomal protein S10p/S20e EEL44_08025 PF00297 Ribosomal protein L3 EEL44_08030 PF00573 Ribosomal protein L4/L1 family EEL44_08035 PF00276 Ribosomal protein L23 EEL44_08040 PF00181 Ribosomal Proteins L2, RNA binding domain EEL44_08040 PF03947 Ribosomal Proteins L2, C-terminal domain EEL44_08045 PF00203 Ribosomal protein S19 EEL44_08050 PF00237 Ribosomal protein L22p/L17e EEL44_08055 PF00189 Ribosomal protein S3, C-terminal domain EEL44_08055 PF07650 KH domain EEL44_08060 PF00252 Ribosomal protein L16p/L10e EEL44_08065 PF00831 Ribosomal L29 protein EEL44_08070 PF00366 Ribosomal protein S17 EEL44_08075 PF00238 Ribosomal protein L14p/L23e EEL44_08080 PF00467 KOW motif EEL44_08080 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EEL44_08085 PF00281 Ribosomal protein L5 EEL44_08085 PF00673 ribosomal L5P family C-terminus EEL44_08090 PF00253 Ribosomal protein S14p/S29e EEL44_08095 PF00410 Ribosomal protein S8 EEL44_08100 PF00347 Ribosomal protein L6 EEL44_08105 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EEL44_08110 PF03719 Ribosomal protein S5, C-terminal domain EEL44_08110 PF00333 Ribosomal protein S5, N-terminal domain EEL44_08115 PF00327 Ribosomal protein L30p/L7e EEL44_08120 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EEL44_08125 PF00344 SecY translocase EEL44_08130 PF00444 Ribosomal protein L36 EEL44_08135 PF00416 Ribosomal protein S13/S18 EEL44_08140 PF00411 Ribosomal protein S11 EEL44_08145 PF00163 Ribosomal protein S4/S9 N-terminal domain EEL44_08145 PF01479 S4 domain EEL44_08150 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EEL44_08150 PF01000 RNA polymerase Rpb3/RpoA insert domain EEL44_08150 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EEL44_08155 PF01196 Ribosomal protein L17 EEL44_08165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEL44_08165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EEL44_08170 PF08525 Opacity-associated protein A N-terminal motif EEL44_08170 PF04225 Opacity-associated protein A LysM-like domain EEL44_08175 PF00892 EamA-like transporter family EEL44_08180 PF13673 Acetyltransferase (GNAT) domain EEL44_08185 PF03880 DbpA RNA binding domain EEL44_08185 PF00270 DEAD/DEAH box helicase EEL44_08185 PF00271 Helicase conserved C-terminal domain EEL44_08195 PF02872 5'-nucleotidase, C-terminal domain EEL44_08195 PF00149 Calcineurin-like phosphoesterase EEL44_08200 PF10414 Sirohaem synthase dimerisation region EEL44_08200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EEL44_08200 PF14824 Sirohaem biosynthesis protein central EEL44_08205 PF01507 Phosphoadenosine phosphosulfate reductase family EEL44_08210 PF00009 Elongation factor Tu GTP binding domain EEL44_08235 PF00005 ABC transporter EEL44_08245 PF10795 Protein of unknown function (DUF2607) EEL44_08250 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) EEL44_08255 PF01625 Peptide methionine sulfoxide reductase EEL44_08260 PF01103 Surface antigen EEL44_08260 PF07244 Surface antigen variable number repeat EEL44_08260 PF17243 POTRA domain TamA domain 1 EEL44_08265 PF04357 TamB, inner membrane protein subunit of TAM complex EEL44_08270 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like EEL44_08275 PF00719 Inorganic pyrophosphatase EEL44_08280 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain EEL44_08290 PF02875 Mur ligase family, glutamate ligase domain EEL44_08290 PF08245 Mur ligase middle domain EEL44_08290 PF01225 Mur ligase family, catalytic domain EEL44_08295 PF02441 Flavoprotein EEL44_08305 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_08310 PF00005 ABC transporter EEL44_08315 PF04751 Protein of unknown function (DUF615) EEL44_08320 PF01523 Putative modulator of DNA gyrase EEL44_08325 PF03448 MgtE intracellular N domain EEL44_08325 PF01769 Divalent cation transporter EEL44_08325 PF00571 CBS domain EEL44_08330 PF00381 PTS HPr component phosphorylation site EEL44_08335 PF03668 P-loop ATPase protein family EEL44_08340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEL44_08345 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EEL44_08350 PF04552 Sigma-54, DNA binding domain EEL44_08350 PF00309 Sigma-54 factor, Activator interacting domain (AID) EEL44_08350 PF04963 Sigma-54 factor, core binding domain EEL44_08355 PF00005 ABC transporter EEL44_08355 PF12399 Branched-chain amino acid ATP-binding cassette transporter EEL44_08360 PF03968 OstA-like protein EEL44_08375 PF01380 SIS domain EEL44_08375 PF00571 CBS domain EEL44_08380 PF01699 Sodium/calcium exchanger protein EEL44_08390 PF00005 ABC transporter EEL44_08395 PF02405 Permease MlaE EEL44_08400 PF02470 MlaD protein EEL44_08405 PF05494 MlaC protein EEL44_08415 PF01722 BolA-like protein EEL44_08420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EEL44_08425 PF01553 Acyltransferase EEL44_08430 PF01042 Endoribonuclease L-PSP EEL44_08435 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain EEL44_08435 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain EEL44_08440 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EEL44_08440 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EEL44_08445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EEL44_08445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EEL44_08450 PF13638 PIN domain EEL44_08450 PF02562 PhoH-like protein EEL44_08460 PF18339 RapA N-terminal Tudor like domain 1 EEL44_08460 PF00176 SNF2 family N-terminal domain EEL44_08460 PF12137 RNA polymerase recycling family C-terminal EEL44_08460 PF00271 Helicase conserved C-terminal domain EEL44_08460 PF18337 RapA N-terminal Tudor like domain EEL44_08465 PF00849 RNA pseudouridylate synthase EEL44_08470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEL44_08470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEL44_08475 PF10458 Valyl tRNA synthetase tRNA binding arm EEL44_08475 PF00133 tRNA synthetases class I (I, L, M and V) EEL44_08475 PF08264 Anticodon-binding domain of tRNA EEL44_08480 PF04364 DNA polymerase III chi subunit, HolC EEL44_08485 PF02789 Cytosol aminopeptidase family, N-terminal domain EEL44_08485 PF00883 Cytosol aminopeptidase family, catalytic domain EEL44_08490 PF03739 Lipopolysaccharide export system permease LptF/LptG EEL44_08495 PF03739 Lipopolysaccharide export system permease LptF/LptG EEL44_08510 PF00072 Response regulator receiver domain EEL44_08555 PF00694 Aconitase C-terminal domain EEL44_08560 PF00330 Aconitase family (aconitate hydratase) EEL44_08565 PF00180 Isocitrate/isopropylmalate dehydrogenase EEL44_08570 PF00682 HMGL-like EEL44_08570 PF08502 LeuA allosteric (dimerisation) domain EEL44_08580 PF01569 PAP2 superfamily EEL44_08590 PF03466 LysR substrate binding domain EEL44_08590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_08595 PF00501 AMP-binding enzyme EEL44_08600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEL44_08600 PF00205 Thiamine pyrophosphate enzyme, central domain EEL44_08600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EEL44_08605 PF10369 Small subunit of acetolactate synthase EEL44_08610 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEL44_08610 PF01842 ACT domain EEL44_08610 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEL44_08615 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EEL44_08620 PF01812 5-formyltetrahydrofolate cyclo-ligase family EEL44_08630 PF05164 Cell division protein ZapA EEL44_08635 PF03695 Uncharacterised protein family (UPF0149) EEL44_08640 PF01494 FAD binding domain EEL44_08645 PF01494 FAD binding domain EEL44_08660 PF03937 Flavinator of succinate dehydrogenase EEL44_08670 PF02910 Fumarate reductase flavoprotein C-term EEL44_08670 PF00890 FAD binding domain EEL44_08680 PF04542 Sigma-70 region 2 EEL44_08680 PF08281 Sigma-70, region 4 EEL44_08685 PF03873 Anti sigma-E protein RseA, C-terminal domain EEL44_08685 PF03872 Anti sigma-E protein RseA, N-terminal domain EEL44_08690 PF17188 MucB/RseB C-terminal domain EEL44_08690 PF03888 MucB/RseB N-terminal domain EEL44_08700 PF00009 Elongation factor Tu GTP binding domain EEL44_08700 PF00679 Elongation factor G C-terminus EEL44_08700 PF03144 Elongation factor Tu domain 2 EEL44_08700 PF06421 GTP-binding protein LepA C-terminus EEL44_08705 PF10502 Signal peptidase, peptidase S26 EEL44_08710 PF14622 Ribonuclease-III-like EEL44_08710 PF00035 Double-stranded RNA binding motif EEL44_08715 PF01926 50S ribosome-binding GTPase EEL44_08715 PF07650 KH domain EEL44_08720 PF02565 Recombination protein O C terminal EEL44_08720 PF11967 Recombination protein O N terminal EEL44_08725 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EEL44_08730 PF01648 4'-phosphopantetheinyl transferase superfamily EEL44_08745 PF00563 EAL domain EEL44_08745 PF00990 Diguanylate cyclase, GGDEF domain EEL44_08750 PF00072 Response regulator receiver domain EEL44_08750 PF00672 HAMP domain EEL44_08750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EEL44_08750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_08750 PF00512 His Kinase A (phospho-acceptor) domain EEL44_08750 PF01627 Hpt domain EEL44_08755 PF05958 tRNA (Uracil-5-)-methyltransferase EEL44_08755 PF01938 TRAM domain EEL44_08760 PF13291 ACT domain EEL44_08760 PF04607 Region found in RelA / SpoT proteins EEL44_08760 PF02824 TGS domain EEL44_08765 PF03819 MazG nucleotide pyrophosphohydrolase domain EEL44_08770 PF06418 CTP synthase N-terminus EEL44_08770 PF00117 Glutamine amidotransferase class-I EEL44_08775 PF03952 Enolase, N-terminal domain EEL44_08775 PF00113 Enolase, C-terminal TIM barrel domain EEL44_08780 PF01743 Poly A polymerase head domain EEL44_08780 PF12627 Probable RNA and SrmB- binding site of polymerase A EEL44_08780 PF01966 HD domain EEL44_08785 PF13401 AAA domain EEL44_08785 PF01471 Putative peptidoglycan binding domain EEL44_08795 PF08239 Bacterial SH3 domain EEL44_08800 PF01384 Phosphate transporter family EEL44_08805 PF01865 Protein of unknown function DUF47 EEL44_08810 PF01928 CYTH domain EEL44_08815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_08815 PF00672 HAMP domain EEL44_08815 PF02743 Cache domain EEL44_08820 PF08335 GlnD PII-uridylyltransferase EEL44_08820 PF03710 Glutamate-ammonia ligase adenylyltransferase EEL44_08825 PF00294 pfkB family carbohydrate kinase EEL44_08825 PF01467 Cytidylyltransferase-like EEL44_08830 PF02321 Outer membrane efflux protein EEL44_08835 PF00293 NUDIX domain EEL44_08840 PF06853 Protein of unknown function (DUF1249) EEL44_08845 PF00149 Calcineurin-like phosphoesterase EEL44_08850 PF05728 Uncharacterised protein family (UPF0227) EEL44_08855 PF00986 DNA gyrase B subunit, carboxyl terminus EEL44_08855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_08855 PF00204 DNA gyrase B EEL44_08855 PF01751 Toprim domain EEL44_08860 PF00521 DNA gyrase/topoisomerase IV, subunit A EEL44_08860 PF03989 DNA gyrase C-terminal domain, beta-propeller EEL44_08865 PF03884 DNA gyrase inhibitor YacG EEL44_08870 PF07072 Cell division protein EEL44_08875 PF01121 Dephospho-CoA kinase EEL44_08880 PF01478 Type IV leader peptidase family EEL44_08880 PF06750 Bacterial Peptidase A24 N-terminal domain EEL44_08885 PF00482 Type II secretion system (T2SS), protein F EEL44_08890 PF00437 Type II/IV secretion system protein EEL44_08890 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain EEL44_08895 PF07963 Prokaryotic N-terminal methylation motif EEL44_08895 PF00114 Pilin (bacterial filament) EEL44_08900 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EEL44_08900 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EEL44_08905 PF01510 N-acetylmuramoyl-L-alanine amidase EEL44_08910 PF00258 Flavodoxin EEL44_08915 PF00589 Phage integrase family EEL44_08915 PF02899 Phage integrase, N-terminal SAM-like domain EEL44_08920 PF13098 Thioredoxin-like domain EEL44_08920 PF10411 Disulfide bond isomerase protein N-terminus EEL44_08925 PF02272 DHHA1 domain EEL44_08925 PF01368 DHH family EEL44_08925 PF17768 RecJ OB domain EEL44_08930 PF00149 Calcineurin-like phosphoesterase EEL44_08930 PF02872 5'-nucleotidase, C-terminal domain EEL44_08940 PF07729 FCD domain EEL44_08940 PF00392 Bacterial regulatory proteins, gntR family EEL44_08945 PF00456 Transketolase, thiamine diphosphate binding domain EEL44_08945 PF17831 Pyruvate dehydrogenase E1 component middle domain EEL44_08950 PF02817 e3 binding domain EEL44_08950 PF00364 Biotin-requiring enzyme EEL44_08950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EEL44_08955 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_08955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEL44_08965 PF01795 MraW methylase family EEL44_08970 PF04999 Cell division protein FtsL EEL44_08975 PF00905 Penicillin binding protein transpeptidase domain EEL44_08975 PF03717 Penicillin-binding Protein dimerisation domain EEL44_08980 PF08245 Mur ligase middle domain EEL44_08980 PF02875 Mur ligase family, glutamate ligase domain EEL44_08980 PF01225 Mur ligase family, catalytic domain EEL44_08985 PF01225 Mur ligase family, catalytic domain EEL44_08985 PF02875 Mur ligase family, glutamate ligase domain EEL44_08985 PF08245 Mur ligase middle domain EEL44_08990 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EEL44_08990 PF00953 Glycosyl transferase family 4 EEL44_08995 PF02875 Mur ligase family, glutamate ligase domain EEL44_08995 PF08245 Mur ligase middle domain EEL44_09000 PF01098 Cell cycle protein EEL44_09005 PF04101 Glycosyltransferase family 28 C-terminal domain EEL44_09005 PF03033 Glycosyltransferase family 28 N-terminal domain EEL44_09010 PF01225 Mur ligase family, catalytic domain EEL44_09010 PF08245 Mur ligase middle domain EEL44_09010 PF02875 Mur ligase family, glutamate ligase domain EEL44_09015 PF08478 POTRA domain, FtsQ-type EEL44_09015 PF03799 Cell division protein FtsQ EEL44_09020 PF02491 SHS2 domain inserted in FTSA EEL44_09025 PF00091 Tubulin/FtsZ family, GTPase domain EEL44_09025 PF12327 FtsZ family, C-terminal domain EEL44_09030 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EEL44_09040 PF07517 SecA DEAD-like domain EEL44_09040 PF01043 SecA preprotein cross-linking domain EEL44_09040 PF07516 SecA Wing and Scaffold domain EEL44_09040 PF02810 SEC-C motif EEL44_09045 PF00293 NUDIX domain EEL44_09050 PF05173 Dihydrodipicolinate reductase, C-terminus EEL44_09050 PF01113 Dihydrodipicolinate reductase, N-terminus EEL44_09060 PF00117 Glutamine amidotransferase class-I EEL44_09060 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EEL44_09065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EEL44_09065 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EEL44_09065 PF02142 MGS-like domain EEL44_09085 PF00005 ABC transporter EEL44_09090 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EEL44_09095 PF01925 Sulfite exporter TauE/SafE EEL44_09100 PF03466 LysR substrate binding domain EEL44_09100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_09105 PF03458 UPF0126 domain EEL44_09110 PF01497 Periplasmic binding protein EEL44_09120 PF01048 Phosphorylase superfamily EEL44_09130 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EEL44_09130 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_09135 PF04898 Glutamate synthase central domain EEL44_09135 PF00310 Glutamine amidotransferases class-II EEL44_09135 PF01645 Conserved region in glutamate synthase EEL44_09135 PF01493 GXGXG motif EEL44_09140 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EEL44_09140 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_09145 PF00310 Glutamine amidotransferases class-II EEL44_09145 PF01645 Conserved region in glutamate synthase EEL44_09145 PF01493 GXGXG motif EEL44_09145 PF04898 Glutamate synthase central domain EEL44_09150 PF16199 Radical_SAM C-terminal domain EEL44_09150 PF04055 Radical SAM superfamily EEL44_09155 PF00563 EAL domain EEL44_09155 PF00990 Diguanylate cyclase, GGDEF domain EEL44_09155 PF00360 Phytochrome region EEL44_09155 PF01590 GAF domain EEL44_09160 PF18415 Histidine kinase receptor ArcB trans-membrane domain EEL44_09160 PF00512 His Kinase A (phospho-acceptor) domain EEL44_09160 PF01627 Hpt domain EEL44_09160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_09160 PF00072 Response regulator receiver domain EEL44_09160 PF00989 PAS fold EEL44_09165 PF00486 Transcriptional regulatory protein, C terminal EEL44_09165 PF00072 Response regulator receiver domain EEL44_09175 PF03737 Aldolase/RraA EEL44_09190 PF00696 Amino acid kinase family EEL44_09190 PF13840 ACT domain EEL44_09190 PF00742 Homoserine dehydrogenase EEL44_09190 PF03447 Homoserine dehydrogenase, NAD binding domain EEL44_09190 PF01842 ACT domain EEL44_09195 PF08544 GHMP kinases C terminal EEL44_09195 PF00288 GHMP kinases N terminal domain EEL44_09200 PF00291 Pyridoxal-phosphate dependent enzyme EEL44_09200 PF14821 Threonine synthase N terminus EEL44_09205 PF01228 Glycine radical EEL44_09210 PF01261 Xylose isomerase-like TIM barrel EEL44_09215 PF03167 Uracil DNA glycosylase superfamily EEL44_09230 PF01235 Sodium:alanine symporter family EEL44_09235 PF03883 Peroxide stress protein YaaA EEL44_09240 PF01026 TatD related DNase EEL44_09245 PF01773 Na+ dependent nucleoside transporter N-terminus EEL44_09245 PF07662 Na+ dependent nucleoside transporter C-terminus EEL44_09245 PF07670 Nucleoside recognition EEL44_09255 PF01791 DeoC/LacD family aldolase EEL44_09260 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain EEL44_09260 PF02885 Glycosyl transferase family, helical bundle domain EEL44_09260 PF00591 Glycosyl transferase family, a/b domain EEL44_09265 PF01676 Metalloenzyme superfamily EEL44_09270 PF01048 Phosphorylase superfamily EEL44_09280 PF18429 Domain of unknown function (DUF5609) EEL44_09295 PF18073 Rubredoxin metal binding domain EEL44_09300 PF03144 Elongation factor Tu domain 2 EEL44_09300 PF00009 Elongation factor Tu GTP binding domain EEL44_09300 PF03764 Elongation factor G, domain IV EEL44_09300 PF00679 Elongation factor G C-terminus EEL44_09300 PF14492 Elongation Factor G, domain II EEL44_09305 PF00501 AMP-binding enzyme EEL44_09310 PF00072 Response regulator receiver domain EEL44_09320 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EEL44_09320 PF00703 Glycosyl hydrolases family 2 EEL44_09320 PF02929 Beta galactosidase small chain EEL44_09320 PF16353 Domain of unknown function(DUF4981) EEL44_09320 PF02837 Glycosyl hydrolases family 2, sugar binding domain EEL44_09325 PF00356 Bacterial regulatory proteins, lacI family EEL44_09330 PF01588 Putative tRNA binding domain EEL44_09340 PF01544 CorA-like Mg2+ transporter protein EEL44_09345 PF02080 TrkA-C domain EEL44_09345 PF18030 RimK PreATP-grasp domain EEL44_09345 PF08443 RimK-like ATP-grasp domain EEL44_09350 PF00583 Acetyltransferase (GNAT) family EEL44_09360 PF14602 Hexapeptide repeat of succinyl-transferase EEL44_09360 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle EEL44_09365 PF07130 YebG protein EEL44_09380 PF17946 RecC C-terminal domain EEL44_09385 PF00580 UvrD/REP helicase N-terminal domain EEL44_09385 PF12705 PD-(D/E)XK nuclease superfamily EEL44_09385 PF13361 UvrD-like helicase C-terminal domain EEL44_09390 PF13538 UvrD-like helicase C-terminal domain EEL44_09400 PF00583 Acetyltransferase (GNAT) family EEL44_09400 PF00696 Amino acid kinase family EEL44_09410 PF06725 3D domain EEL44_09410 PF03562 MltA specific insert domain EEL44_09415 PF00899 ThiF family EEL44_09420 PF02657 Fe-S metabolism associated domain EEL44_09425 PF00266 Aminotransferase class-V EEL44_09430 PF01965 DJ-1/PfpI family EEL44_09435 PF02558 Ketopantoate reductase PanE/ApbA EEL44_09435 PF08546 Ketopantoate reductase PanE/ApbA C terminal EEL44_09440 PF03502 Nucleoside-specific channel-forming protein, Tsx EEL44_09450 PF04545 Sigma-70, region 4 EEL44_09450 PF04542 Sigma-70 region 2 EEL44_09460 PF07690 Major Facilitator Superfamily EEL44_09470 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EEL44_09480 PF05175 Methyltransferase small domain EEL44_09485 PF01722 BolA-like protein EEL44_09490 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) EEL44_09490 PF11973 NQRA C-terminal domain EEL44_09495 PF03116 NQR2, RnfD, RnfE family EEL44_09500 PF04205 FMN-binding domain EEL44_09505 PF02508 Rnf-Nqr subunit, membrane protein EEL44_09510 PF02508 Rnf-Nqr subunit, membrane protein EEL44_09515 PF00175 Oxidoreductase NAD-binding domain EEL44_09515 PF00111 2Fe-2S iron-sulfur cluster binding domain EEL44_09515 PF00970 Oxidoreductase FAD-binding domain EEL44_09520 PF02424 ApbE family EEL44_09530 PF00817 impB/mucB/samB family EEL44_09530 PF11798 IMS family HHH motif EEL44_09545 PF00872 Transposase, Mutator family EEL44_09550 PF00990 Diguanylate cyclase, GGDEF domain EEL44_09550 PF17158 Membrane-associated sensor, integral membrane domain EEL44_09555 PF00209 Sodium:neurotransmitter symporter family EEL44_09565 PF08443 RimK-like ATP-grasp domain EEL44_09565 PF18030 RimK PreATP-grasp domain EEL44_09570 PF08443 RimK-like ATP-grasp domain EEL44_09570 PF18030 RimK PreATP-grasp domain EEL44_09575 PF01546 Peptidase family M20/M25/M40 EEL44_09575 PF07687 Peptidase dimerisation domain EEL44_09580 PF00860 Permease family EEL44_09585 PF00156 Phosphoribosyl transferase domain EEL44_09595 PF07417 Sigma factor-binding transcriptional regulator Crl EEL44_09600 PF01472 PUA domain EEL44_09600 PF00696 Amino acid kinase family EEL44_09605 PF00171 Aldehyde dehydrogenase family EEL44_09610 PF03477 ATP cone domain EEL44_09615 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EEL44_09615 PF01872 RibD C-terminal domain EEL44_09620 PF00677 Lumazine binding domain EEL44_09625 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EEL44_09625 PF00925 GTP cyclohydrolase II EEL44_09630 PF00885 6,7-dimethyl-8-ribityllumazine synthase EEL44_09635 PF01029 NusB family EEL44_09640 PF02769 AIR synthase related protein, C-terminal domain EEL44_09640 PF00586 AIR synthase related protein, N-terminal domain EEL44_09645 PF04608 Phosphatidylglycerophosphatase A EEL44_09650 PF11944 Protein of unknown function (DUF3461) EEL44_09655 PF01909 Nucleotidyltransferase domain EEL44_09655 PF01966 HD domain EEL44_09655 PF08335 GlnD PII-uridylyltransferase EEL44_09660 PF00557 Metallopeptidase family M24 EEL44_09665 PF00318 Ribosomal protein S2 EEL44_09670 PF00889 Elongation factor TS EEL44_09675 PF00696 Amino acid kinase family EEL44_09680 PF01765 Ribosome recycling factor EEL44_09685 PF01255 Putative undecaprenyl diphosphate synthase EEL44_09695 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EEL44_09695 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EEL44_09695 PF13288 DXP reductoisomerase C-terminal domain EEL44_09700 PF17820 PDZ domain EEL44_09700 PF02163 Peptidase family M50 EEL44_09705 PF07244 Surface antigen variable number repeat EEL44_09705 PF01103 Surface antigen EEL44_09710 PF03938 Outer membrane protein (OmpH-like) EEL44_09715 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EEL44_09715 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_09720 PF07977 FabA-like domain EEL44_09725 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EEL44_09725 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_09730 PF02684 Lipid-A-disaccharide synthetase EEL44_09735 PF01351 Ribonuclease HII EEL44_09740 PF02811 PHP domain EEL44_09740 PF07733 Bacterial DNA polymerase III alpha NTPase domain EEL44_09740 PF14579 Helix-hairpin-helix motif EEL44_09740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EEL44_09740 PF01336 OB-fold nucleic acid binding domain EEL44_09745 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EEL44_09750 PF01171 PP-loop family EEL44_09750 PF09179 TilS substrate binding domain EEL44_09750 PF11734 TilS substrate C-terminal domain EEL44_09755 PF00034 Cytochrome c EEL44_09760 PF05870 Phenolic acid decarboxylase (PAD) EEL44_09765 PF00543 Nitrogen regulatory protein P-II EEL44_09770 PF03372 Endonuclease/Exonuclease/phosphatase family EEL44_09775 PF01476 LysM domain EEL44_09775 PF01464 Transglycosylase SLT domain EEL44_09780 PF16123 Hydroxyacylglutathione hydrolase C-terminus EEL44_09780 PF00753 Metallo-beta-lactamase superfamily EEL44_09785 PF08241 Methyltransferase domain EEL44_09790 PF00075 RNase H EEL44_09795 PF00929 Exonuclease EEL44_09805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EEL44_09805 PF02770 Acyl-CoA dehydrogenase, middle domain EEL44_09805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EEL44_09805 PF09317 Domain of unknown function (DUF1974) EEL44_09810 PF13580 SIS domain EEL44_09815 PF13230 Glutamine amidotransferases class-II EEL44_09820 PF00551 Formyl transferase EEL44_09825 PF00586 AIR synthase related protein, N-terminal domain EEL44_09825 PF02769 AIR synthase related protein, C-terminal domain EEL44_09835 PF08448 PAS fold EEL44_09835 PF00990 Diguanylate cyclase, GGDEF domain EEL44_09840 PF01479 S4 domain EEL44_09840 PF00849 RNA pseudouridylate synthase EEL44_09845 PF01713 Smr domain EEL44_09860 PF01963 TraB family EEL44_09865 PF03173 Putative carbohydrate binding domain EEL44_09865 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain EEL44_09865 PF00728 Glycosyl hydrolase family 20, catalytic domain EEL44_09865 PF02838 Glycosyl hydrolase family 20, domain 2 EEL44_09875 PF00403 Heavy-metal-associated domain EEL44_09880 PF00749 tRNA synthetases class I (E and Q), catalytic domain EEL44_09885 PF00691 OmpA family EEL44_09885 PF01389 OmpA-like transmembrane domain EEL44_09895 PF07715 TonB-dependent Receptor Plug Domain EEL44_09900 PF04954 Siderophore-interacting protein EEL44_09900 PF08021 Siderophore-interacting FAD-binding domain EEL44_09905 PF00550 Phosphopantetheine attachment site EEL44_09905 PF00668 Condensation domain EEL44_09905 PF00501 AMP-binding enzyme EEL44_09905 PF08242 Methyltransferase domain EEL44_09940 PF00072 Response regulator receiver domain EEL44_09940 PF01584 CheW-like domain EEL44_09945 PF01739 CheR methyltransferase, SAM binding domain EEL44_09945 PF03705 CheR methyltransferase, all-alpha domain EEL44_09950 PF00460 Flagella basal body rod protein EEL44_09955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEL44_09955 PF00460 Flagella basal body rod protein EEL44_09960 PF03963 Flagellar hook capping protein - N-terminal region EEL44_09960 PF13861 FlgD Tudor-like domain EEL44_09960 PF13860 FlgD Ig-like domain EEL44_09965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEL44_09965 PF00460 Flagella basal body rod protein EEL44_09965 PF07559 Flagellar basal body protein FlaE EEL44_09970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEL44_09970 PF00460 Flagella basal body rod protein EEL44_09975 PF00460 Flagella basal body rod protein EEL44_09975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEL44_09980 PF02107 Flagellar L-ring protein EEL44_09985 PF02119 Flagellar P-ring protein EEL44_09990 PF10135 Rod binding protein EEL44_09990 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EEL44_09995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EEL44_09995 PF07196 Flagellin hook IN motif EEL44_10005 PF00700 Bacterial flagellin C-terminal helical region EEL44_10005 PF00669 Bacterial flagellin N-terminal helical region EEL44_10005 PF07196 Flagellin hook IN motif EEL44_10010 PF00669 Bacterial flagellin N-terminal helical region EEL44_10010 PF00700 Bacterial flagellin C-terminal helical region EEL44_10010 PF07196 Flagellin hook IN motif EEL44_10095 PF01926 50S ribosome-binding GTPase EEL44_10095 PF06071 Protein of unknown function (DUF933) EEL44_10100 PF01195 Peptidyl-tRNA hydrolase EEL44_10105 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EEL44_10105 PF14572 Phosphoribosyl synthetase-associated domain EEL44_10110 PF00288 GHMP kinases N terminal domain EEL44_10110 PF08544 GHMP kinases C terminal EEL44_10115 PF03550 Outer membrane lipoprotein LolB EEL44_10120 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EEL44_10120 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EEL44_10120 PF01488 Shikimate / quinate 5-dehydrogenase EEL44_10125 PF03462 PCRF domain EEL44_10125 PF00472 RF-1 domain EEL44_10130 PF17827 PrmC N-terminal domain EEL44_10130 PF13847 Methyltransferase domain EEL44_10135 PF04247 Invasion gene expression up-regulator, SirB EEL44_10140 PF13369 Transglutaminase-like superfamily EEL44_10145 PF00793 DAHP synthetase I family EEL44_10150 PF02872 5'-nucleotidase, C-terminal domain EEL44_10150 PF00149 Calcineurin-like phosphoesterase EEL44_10155 PF04073 Aminoacyl-tRNA editing domain EEL44_10160 PF00860 Permease family EEL44_10175 PF03358 NADPH-dependent FMN reductase EEL44_10180 PF03960 ArsC family EEL44_10185 PF01435 Peptidase family M48 EEL44_10185 PF13181 Tetratricopeptide repeat EEL44_10195 PF01594 AI-2E family transporter EEL44_10200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_10200 PF02743 Cache domain EEL44_10200 PF00672 HAMP domain EEL44_10205 PF00578 AhpC/TSA family EEL44_10215 PF00701 Dihydrodipicolinate synthetase family EEL44_10220 PF06804 NlpB/DapX lipoprotein EEL44_10230 PF02557 D-alanyl-D-alanine carboxypeptidase EEL44_10235 PF07687 Peptidase dimerisation domain EEL44_10235 PF01546 Peptidase family M20/M25/M40 EEL44_10240 PF03960 ArsC family EEL44_10255 PF11143 Protein of unknown function (DUF2919) EEL44_10260 PF04261 Dyp-type peroxidase family EEL44_10265 PF07196 Flagellin hook IN motif EEL44_10265 PF00700 Bacterial flagellin C-terminal helical region EEL44_10265 PF00669 Bacterial flagellin N-terminal helical region EEL44_10270 PF07196 Flagellin hook IN motif EEL44_10270 PF00669 Bacterial flagellin N-terminal helical region EEL44_10270 PF00700 Bacterial flagellin C-terminal helical region EEL44_10275 PF00669 Bacterial flagellin N-terminal helical region EEL44_10275 PF00700 Bacterial flagellin C-terminal helical region EEL44_10275 PF07196 Flagellin hook IN motif EEL44_10280 PF03646 FlaG protein EEL44_10285 PF07195 Flagellar hook-associated protein 2 C-terminus EEL44_10285 PF02465 Flagellar hook-associated protein 2 N-terminus EEL44_10285 PF07196 Flagellin hook IN motif EEL44_10295 PF02561 Flagellar protein FliS EEL44_10300 PF02954 Bacterial regulatory protein, Fis family EEL44_10300 PF00072 Response regulator receiver domain EEL44_10300 PF00158 Sigma-54 interaction domain EEL44_10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_10305 PF13426 PAS domain EEL44_10305 PF00512 His Kinase A (phospho-acceptor) domain EEL44_10305 PF13493 Domain of unknown function (DUF4118) EEL44_10305 PF08447 PAS fold EEL44_10305 PF00989 PAS fold EEL44_10310 PF00158 Sigma-54 interaction domain EEL44_10310 PF00072 Response regulator receiver domain EEL44_10310 PF02954 Bacterial regulatory protein, Fis family EEL44_10315 PF02049 Flagellar hook-basal body complex protein FliE EEL44_10320 PF08345 Flagellar M-ring protein C-terminal EEL44_10320 PF01514 Secretory protein of YscJ/FliF family EEL44_10325 PF01706 FliG C-terminal domain EEL44_10325 PF14841 FliG middle domain EEL44_10325 PF14842 FliG N-terminal domain EEL44_10330 PF02108 Flagellar assembly protein FliH EEL44_10335 PF18269 T3SS EscN ATPase C-terminal domain EEL44_10335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEL44_10355 PF03748 Flagellar basal body-associated protein FliL EEL44_10360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EEL44_10360 PF02154 Flagellar motor switch protein FliM EEL44_10365 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EEL44_10370 PF04347 Flagellar biosynthesis protein, FliO EEL44_10375 PF00813 FliP family EEL44_10380 PF01313 Bacterial export proteins, family 3 EEL44_10385 PF01311 Bacterial export proteins, family 1 EEL44_10390 PF01312 FlhB HrpN YscU SpaS Family EEL44_10395 PF01713 Smr domain EEL44_10400 PF05175 Methyltransferase small domain EEL44_10410 PF01264 Chorismate synthase EEL44_10415 PF03458 UPF0126 domain EEL44_10420 PF04315 Elongation factor P hydroxylase EEL44_10425 PF08891 YfcL protein EEL44_10430 PF03358 NADPH-dependent FMN reductase EEL44_10435 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EEL44_10435 PF01266 FAD dependent oxidoreductase EEL44_10440 PF00109 Beta-ketoacyl synthase, N-terminal domain EEL44_10440 PF02801 Beta-ketoacyl synthase, C-terminal domain EEL44_10445 PF11890 Domain of unknown function (DUF3410) EEL44_10445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EEL44_10445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEL44_10450 PF02774 Semialdehyde dehydrogenase, dimerisation domain EEL44_10450 PF01118 Semialdehyde dehydrogenase, NAD binding domain EEL44_10455 PF01475 Ferric uptake regulator family EEL44_10465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_10465 PF03466 LysR substrate binding domain EEL44_10470 PF03788 LrgA family EEL44_10475 PF04172 LrgB-like family EEL44_10480 PF00258 Flavodoxin EEL44_10490 PF12697 Alpha/beta hydrolase family EEL44_10495 PF17206 SeqA protein N-terminal domain EEL44_10495 PF03925 SeqA protein C-terminal domain EEL44_10500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEL44_10500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEL44_10500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEL44_10500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEL44_10510 PF01784 NIF3 (NGG1p interacting factor 3) EEL44_10515 PF00285 Citrate synthase, C-terminal domain EEL44_10520 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EEL44_10525 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EEL44_10530 PF00890 FAD binding domain EEL44_10530 PF02910 Fumarate reductase flavoprotein C-term EEL44_10535 PF13085 2Fe-2S iron-sulfur cluster binding domain EEL44_10540 PF02779 Transketolase, pyrimidine binding domain EEL44_10540 PF00676 Dehydrogenase E1 component EEL44_10540 PF16078 2-oxoglutarate dehydrogenase N-terminus EEL44_10540 PF16870 2-oxoglutarate dehydrogenase C-terminal EEL44_10545 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EEL44_10545 PF00364 Biotin-requiring enzyme EEL44_10545 PF02817 e3 binding domain EEL44_10550 PF00549 CoA-ligase EEL44_10550 PF08442 ATP-grasp domain EEL44_10555 PF02629 CoA binding domain EEL44_10555 PF00549 CoA-ligase EEL44_10560 PF00950 ABC 3 transport family EEL44_10565 PF00005 ABC transporter EEL44_10570 PF01297 Zinc-uptake complex component A periplasmic EEL44_10575 PF02311 AraC-like ligand binding domain EEL44_10575 PF12833 Helix-turn-helix domain EEL44_10580 PF04023 FeoA domain EEL44_10585 PF07670 Nucleoside recognition EEL44_10585 PF07664 Ferrous iron transport protein B C terminus EEL44_10585 PF02421 Ferrous iron transport protein B EEL44_10600 PF00750 tRNA synthetases class I (R) EEL44_10600 PF05746 DALR anticodon binding domain EEL44_10600 PF03485 Arginyl tRNA synthetase N terminal domain EEL44_10610 PF05193 Peptidase M16 inactive domain EEL44_10610 PF00675 Insulinase (Peptidase family M16) EEL44_10615 PF00300 Histidine phosphatase superfamily (branch 1) EEL44_10620 PF00771 FHIPEP family EEL44_10625 PF00448 SRP54-type protein, GTPase domain EEL44_10630 PF10609 NUBPL iron-transfer P-loop NTPase EEL44_10635 PF04539 Sigma-70 region 3 EEL44_10635 PF04545 Sigma-70, region 4 EEL44_10635 PF04542 Sigma-70 region 2 EEL44_10640 PF00072 Response regulator receiver domain EEL44_10645 PF04344 Chemotaxis phosphatase, CheZ EEL44_10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_10650 PF01627 Hpt domain EEL44_10650 PF07194 P2 response regulator binding domain EEL44_10650 PF01584 CheW-like domain EEL44_10650 PF02895 Signal transducing histidine kinase, homodimeric domain EEL44_10655 PF00072 Response regulator receiver domain EEL44_10655 PF01339 CheB methylesterase EEL44_10660 PF13614 AAA domain EEL44_10670 PF01584 CheW-like domain EEL44_10680 PF00005 ABC transporter EEL44_10685 PF03379 CcmB protein EEL44_10690 PF01578 Cytochrome C assembly protein EEL44_10695 PF04995 Heme exporter protein D (CcmD) EEL44_10700 PF03100 CcmE EEL44_10705 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EEL44_10705 PF01578 Cytochrome C assembly protein EEL44_10710 PF08534 Redoxin EEL44_10715 PF03918 Cytochrome C biogenesis protein EEL44_10725 PF04333 MlaA lipoprotein EEL44_10740 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EEL44_10740 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EEL44_10745 PF00462 Glutaredoxin EEL44_10750 PF01751 Toprim domain EEL44_10750 PF01131 DNA topoisomerase EEL44_10755 PF00850 Histone deacetylase domain EEL44_10770 PF11893 Domain of unknown function (DUF3413) EEL44_10770 PF00884 Sulfatase EEL44_10775 PF07208 Protein of unknown function (DUF1414) EEL44_10780 PF04245 37-kD nucleoid-associated bacterial protein EEL44_10790 PF03553 Na+/H+ antiporter family EEL44_10795 PF01118 Semialdehyde dehydrogenase, NAD binding domain EEL44_10795 PF02774 Semialdehyde dehydrogenase, dimerisation domain EEL44_10800 PF01914 MarC family integral membrane protein EEL44_10805 PF00171 Aldehyde dehydrogenase family EEL44_10805 PF00465 Iron-containing alcohol dehydrogenase EEL44_10820 PF01740 STAS domain EEL44_10820 PF00916 Sulfate permease family EEL44_10825 PF10150 Ribonuclease E/G family EEL44_10825 PF00575 S1 RNA binding domain EEL44_10825 PF12111 Polyribonucleotide phosphorylase C terminal EEL44_10840 PF01479 S4 domain EEL44_10840 PF00849 RNA pseudouridylate synthase EEL44_10845 PF02545 Maf-like protein EEL44_10850 PF02620 Large ribosomal RNA subunit accumulation protein YceD EEL44_10855 PF01783 Ribosomal L32p protein family EEL44_10860 PF02504 Fatty acid synthesis protein EEL44_10865 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EEL44_10865 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EEL44_10870 PF00698 Acyl transferase domain EEL44_10880 PF00550 Phosphopantetheine attachment site EEL44_10885 PF00109 Beta-ketoacyl synthase, N-terminal domain EEL44_10885 PF02801 Beta-ketoacyl synthase, C-terminal domain EEL44_10890 PF01063 Amino-transferase class IV EEL44_10895 PF02618 YceG-like family EEL44_10900 PF02223 Thymidylate kinase EEL44_10905 PF09115 DNA polymerase III, delta subunit, C terminal EEL44_10910 PF01026 TatD related DNase EEL44_10915 PF02378 Phosphotransferase system, EIIC EEL44_10915 PF00367 phosphotransferase system, EIIB EEL44_10925 PF00209 Sodium:neurotransmitter symporter family EEL44_10940 PF01734 Patatin-like phospholipase EEL44_10945 PF00224 Pyruvate kinase, barrel domain EEL44_10945 PF02887 Pyruvate kinase, alpha/beta domain EEL44_10950 PF00480 ROK family EEL44_10955 PF00072 Response regulator receiver domain EEL44_10955 PF01584 CheW-like domain EEL44_10970 PF13847 Methyltransferase domain EEL44_10985 PF01263 Aldose 1-epimerase EEL44_10990 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EEL44_10990 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EEL44_10995 PF01641 SelR domain EEL44_11005 PF07023 Protein of unknown function (DUF1315) EEL44_11010 PF00710 Asparaginase, N-terminal EEL44_11010 PF17763 Glutaminase/Asparaginase C-terminal domain EEL44_11015 PF01343 Peptidase family S49 EEL44_11020 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_11020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EEL44_11025 PF01842 ACT domain EEL44_11025 PF00551 Formyl transferase EEL44_11040 PF13307 Helicase C-terminal domain EEL44_11040 PF04851 Type III restriction enzyme, res subunit EEL44_11045 PF00814 Glycoprotease family EEL44_11060 PF00561 alpha/beta hydrolase fold EEL44_11065 PF00501 AMP-binding enzyme EEL44_11065 PF13193 AMP-binding enzyme C-terminal domain EEL44_11070 PF00570 HRDC domain EEL44_11070 PF01612 3'-5' exonuclease EEL44_11090 PF13286 Phosphohydrolase-associated domain EEL44_11090 PF01966 HD domain EEL44_11100 PF00155 Aminotransferase class I and II EEL44_11105 PF00425 chorismate binding enzyme EEL44_11110 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEL44_11110 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EEL44_11110 PF16582 Middle domain of thiamine pyrophosphate EEL44_11115 PF12697 Alpha/beta hydrolase family EEL44_11120 PF00378 Enoyl-CoA hydratase/isomerase EEL44_11125 PF13378 Enolase C-terminal domain-like EEL44_11130 PF00501 AMP-binding enzyme EEL44_11130 PF13193 AMP-binding enzyme C-terminal domain EEL44_11135 PF03594 Benzoate membrane transport protein EEL44_11140 PF01381 Helix-turn-helix EEL44_11140 PF07883 Cupin domain EEL44_11145 PF12729 Four helix bundle sensory module for signal transduction EEL44_11145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_11145 PF00672 HAMP domain EEL44_11150 PF07690 Major Facilitator Superfamily EEL44_11170 PF04170 NlpE N-terminal domain EEL44_11175 PF03776 Septum formation topological specificity factor MinE EEL44_11180 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EEL44_11185 PF03775 Septum formation inhibitor MinC, C-terminal domain EEL44_11185 PF05209 Septum formation inhibitor MinC, N-terminal domain EEL44_11190 PF05166 YcgL domain EEL44_11195 PF13406 Transglycosylase SLT domain EEL44_11200 PF03466 LysR substrate binding domain EEL44_11200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_11205 PF01773 Na+ dependent nucleoside transporter N-terminus EEL44_11205 PF07662 Na+ dependent nucleoside transporter C-terminus EEL44_11205 PF07670 Nucleoside recognition EEL44_11210 PF00704 Glycosyl hydrolases family 18 EEL44_11215 PF03264 NapC/NirT cytochrome c family, N-terminal region EEL44_11220 PF00384 Molybdopterin oxidoreductase EEL44_11220 PF18364 Molybdopterin oxidoreductase N-terminal domain EEL44_11220 PF01568 Molydopterin dinucleotide binding domain EEL44_11235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_11235 PF03466 LysR substrate binding domain EEL44_11240 PF01494 FAD binding domain EEL44_11245 PF02668 Taurine catabolism dioxygenase TauD, TfdA family EEL44_11250 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EEL44_11250 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EEL44_11300 PF00563 EAL domain EEL44_11300 PF00990 Diguanylate cyclase, GGDEF domain EEL44_11300 PF03707 Bacterial signalling protein N terminal repeat EEL44_11300 PF13188 PAS domain EEL44_11315 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EEL44_11320 PF03480 Bacterial extracellular solute-binding protein, family 7 EEL44_11325 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EEL44_11330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EEL44_11335 PF02954 Bacterial regulatory protein, Fis family EEL44_11335 PF00158 Sigma-54 interaction domain EEL44_11335 PF00072 Response regulator receiver domain EEL44_11340 PF02743 Cache domain EEL44_11340 PF00512 His Kinase A (phospho-acceptor) domain EEL44_11340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_11350 PF05698 Bacterial trigger factor protein (TF) C-terminus EEL44_11350 PF05697 Bacterial trigger factor protein (TF) EEL44_11350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEL44_11355 PF00574 Clp protease EEL44_11360 PF07724 AAA domain (Cdc48 subfamily) EEL44_11360 PF10431 C-terminal, D2-small domain, of ClpB protein EEL44_11360 PF06689 ClpX C4-type zinc finger EEL44_11365 PF02190 ATP-dependent protease La (LON) substrate-binding domain EEL44_11365 PF05362 Lon protease (S16) C-terminal proteolytic domain EEL44_11365 PF00004 ATPase family associated with various cellular activities (AAA) EEL44_11370 PF00216 Bacterial DNA-binding protein EEL44_11375 PF13145 PPIC-type PPIASE domain EEL44_11385 PF02224 Cytidylate kinase EEL44_11390 PF00575 S1 RNA binding domain EEL44_11395 PF00216 Bacterial DNA-binding protein EEL44_11400 PF06305 Lipopolysaccharide assembly protein A domain EEL44_11405 PF18073 Rubredoxin metal binding domain EEL44_11410 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EEL44_11415 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) EEL44_11425 PF03466 LysR substrate binding domain EEL44_11425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_11435 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EEL44_11435 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EEL44_11440 PF01037 Lrp/AsnC ligand binding domain EEL44_11445 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EEL44_11445 PF17854 FtsK alpha domain EEL44_11445 PF09397 Ftsk gamma domain EEL44_11445 PF01580 FtsK/SpoIIIE family EEL44_11450 PF02600 Disulfide bond formation protein DsbB EEL44_11455 PF06450 Bacterial Na+/H+ antiporter B (NhaB) EEL44_11460 PF07840 FadR C-terminal domain EEL44_11460 PF00392 Bacterial regulatory proteins, gntR family EEL44_11470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_11470 PF00672 HAMP domain EEL44_11475 PF01230 HIT domain EEL44_11490 PF13036 Peptidoglycan-synthase activator LpoB EEL44_11490 PF08139 Prokaryotic membrane lipoprotein lipid attachment site EEL44_11500 PF05728 Uncharacterised protein family (UPF0227) EEL44_11505 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_11515 PF07968 Leukocidin/Hemolysin toxin family EEL44_11515 PF12563 Hemolytic toxin N terminal EEL44_11515 PF16458 Beta-prism lectin EEL44_11525 PF00271 Helicase conserved C-terminal domain EEL44_11525 PF17757 UvrB interaction domain EEL44_11525 PF02559 CarD-like/TRCF domain EEL44_11525 PF03461 TRCF domain EEL44_11525 PF00270 DEAD/DEAH box helicase EEL44_11535 PF02687 FtsX-like permease family EEL44_11535 PF12704 MacB-like periplasmic core domain EEL44_11540 PF00005 ABC transporter EEL44_11545 PF12704 MacB-like periplasmic core domain EEL44_11545 PF02687 FtsX-like permease family EEL44_11555 PF00753 Metallo-beta-lactamase superfamily EEL44_11555 PF13567 Domain of unknown function (DUF4131) EEL44_11555 PF03772 Competence protein EEL44_11560 PF00005 ABC transporter EEL44_11560 PF00664 ABC transporter transmembrane region EEL44_11565 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EEL44_11570 PF03966 Trm112p-like protein EEL44_11575 PF02348 Cytidylyltransferase EEL44_11580 PF04293 SpoVR like protein EEL44_11585 PF04285 Protein of unknown function (DUF444) EEL44_11590 PF06798 PrkA serine protein kinase C-terminal domain EEL44_11590 PF08298 PrkA AAA domain EEL44_11595 PF03887 YfbU domain EEL44_11605 PF04055 Radical SAM superfamily EEL44_11610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_11610 PF12729 Four helix bundle sensory module for signal transduction EEL44_11610 PF00672 HAMP domain EEL44_11620 PF01228 Glycine radical EEL44_11620 PF02901 Pyruvate formate lyase-like EEL44_11635 PF00005 ABC transporter EEL44_11640 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEL44_11645 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_11650 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_11655 PF03372 Endonuclease/Exonuclease/phosphatase family EEL44_11660 PF00672 HAMP domain EEL44_11660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_11665 PF10689 Protein of unknown function (DUF2496) EEL44_11670 PF07445 Primosomal replication protein priC EEL44_11675 PF01925 Sulfite exporter TauE/SafE EEL44_11680 PF06733 DEAD_2 EEL44_11680 PF13307 Helicase C-terminal domain EEL44_11685 PF13609 Gram-negative porin EEL44_11690 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) EEL44_11695 PF02810 SEC-C motif EEL44_11700 PF08668 HDOD domain EEL44_11700 PF00563 EAL domain EEL44_11705 PF00149 Calcineurin-like phosphoesterase EEL44_11710 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EEL44_11715 PF01406 tRNA synthetases class I (C) catalytic domain EEL44_11715 PF09190 DALR domain EEL44_11720 PF02075 Crossover junction endodeoxyribonuclease RuvC EEL44_11725 PF01330 RuvA N terminal domain EEL44_11725 PF07499 RuvA, C-terminal domain EEL44_11730 PF17864 RuvB AAA lid domain EEL44_11730 PF05491 RuvB C-terminal winged helix domain EEL44_11730 PF05496 Holliday junction DNA helicase RuvB P-loop domain EEL44_11735 PF01654 Cytochrome bd terminal oxidase subunit I EEL44_11740 PF02322 Cytochrome bd terminal oxidase subunit II EEL44_11745 PF08173 Membrane bound YbgT-like protein EEL44_11750 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) EEL44_11755 PF03061 Thioesterase superfamily EEL44_11760 PF01618 MotA/TolQ/ExbB proton channel family EEL44_11765 PF02472 Biopolymer transport protein ExbD/TolR EEL44_11775 PF07676 WD40-like Beta Propeller Repeat EEL44_11775 PF04052 TolB amino-terminal domain EEL44_11780 PF00691 OmpA family EEL44_11790 PF02445 Quinolinate synthetase A protein EEL44_11800 PF00512 His Kinase A (phospho-acceptor) domain EEL44_11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_11800 PF00072 Response regulator receiver domain EEL44_11800 PF09308 LuxQ, periplasmic EEL44_11805 PF06610 L-alanine exporter EEL44_11810 PF01238 Phosphomannose isomerase type I EEL44_11815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EEL44_11815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EEL44_11815 PF02378 Phosphotransferase system, EIIC EEL44_11820 PF12833 Helix-turn-helix domain EEL44_11830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EEL44_11850 PF00171 Aldehyde dehydrogenase family EEL44_11855 PF02954 Bacterial regulatory protein, Fis family EEL44_11855 PF01590 GAF domain EEL44_11855 PF00158 Sigma-54 interaction domain EEL44_11860 PF09905 DNA-binding protein VF530 EEL44_11870 PF03441 FAD binding domain of DNA photolyase EEL44_11870 PF00875 DNA photolyase EEL44_11950 PF00005 ABC transporter EEL44_12010 PF04002 RadC-like JAB domain EEL44_12020 PF09264 Vibrio cholerae sialidase, lectin insertion EEL44_12020 PF13088 BNR repeat-like domain EEL44_12025 PF01979 Amidohydrolase family EEL44_12030 PF00480 ROK family EEL44_12035 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase EEL44_12045 PF03480 Bacterial extracellular solute-binding protein, family 7 EEL44_12050 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EEL44_12055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EEL44_12060 PF00701 Dihydrodipicolinate synthetase family EEL44_12065 PF01418 Helix-turn-helix domain, rpiR family EEL44_12065 PF01380 SIS domain EEL44_12070 PF01344 Kelch motif EEL44_12075 PF07646 Kelch motif EEL44_12095 PF02384 N-6 DNA Methylase EEL44_12115 PF11867 Domain of unknown function (DUF3387) EEL44_12115 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EEL44_12115 PF18766 SWI2/SNF2 ATPase EEL44_12135 PF00176 SNF2 family N-terminal domain EEL44_12135 PF12419 SNF2 Helicase protein EEL44_12135 PF00271 Helicase conserved C-terminal domain EEL44_12140 PF00589 Phage integrase family EEL44_12140 PF13356 Arm DNA-binding domain EEL44_12145 PF00589 Phage integrase family EEL44_12145 PF13356 Arm DNA-binding domain EEL44_12155 PF00873 AcrB/AcrD/AcrF family EEL44_12160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEL44_12170 PF02470 MlaD protein EEL44_12175 PF04403 Paraquat-inducible protein A EEL44_12180 PF00924 Mechanosensitive ion channel EEL44_12180 PF05552 Conserved TM helix EEL44_12205 PF08362 YcdC-like protein, C-terminal region EEL44_12205 PF00440 Bacterial regulatory proteins, tetR family EEL44_12210 PF00171 Aldehyde dehydrogenase family EEL44_12215 PF07383 Protein of unknown function (DUF1496) EEL44_12225 PF16295 Tetracyclin repressor-like, C-terminal domain EEL44_12225 PF00440 Bacterial regulatory proteins, tetR family EEL44_12230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EEL44_12230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EEL44_12230 PF09317 Domain of unknown function (DUF1974) EEL44_12230 PF02770 Acyl-CoA dehydrogenase, middle domain EEL44_12235 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase EEL44_12235 PF12241 Trans-2-enoyl-CoA reductase catalytic region EEL44_12235 PF07055 Enoyl reductase FAD binding domain EEL44_12245 PF01176 Translation initiation factor 1A / IF-1 EEL44_12250 PF04377 Arginine-tRNA-protein transferase, C terminus EEL44_12250 PF04376 Arginine-tRNA-protein transferase, N terminus EEL44_12255 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EEL44_12265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EEL44_12270 PF10692 Protein of unknown function (DUF2498) EEL44_12275 PF01751 Toprim domain EEL44_12275 PF01131 DNA topoisomerase EEL44_12275 PF01396 Topoisomerase DNA binding C4 zinc finger EEL44_12275 PF08272 Topoisomerase I zinc-ribbon-like EEL44_12280 PF00483 Nucleotidyl transferase EEL44_12285 PF00534 Glycosyl transferases group 1 EEL44_12285 PF08323 Starch synthase catalytic domain EEL44_12305 PF04994 TfoX C-terminal domain EEL44_12305 PF04993 TfoX N-terminal domain EEL44_12310 PF00356 Bacterial regulatory proteins, lacI family EEL44_12320 PF02613 Nitrate reductase delta subunit EEL44_12325 PF00072 Response regulator receiver domain EEL44_12325 PF00486 Transcriptional regulatory protein, C terminal EEL44_12330 PF02698 DUF218 domain EEL44_12340 PF03882 MukF winged-helix domain EEL44_12340 PF17192 MukF middle domain EEL44_12340 PF17193 MukF C-terminal domain EEL44_12345 PF04288 MukE-like family EEL44_12350 PF16330 MukB hinge domain EEL44_12350 PF04310 MukB N-terminal EEL44_12355 PF01037 Lrp/AsnC ligand binding domain EEL44_12360 PF01810 LysE type translocator EEL44_12365 PF04055 Radical SAM superfamily EEL44_12365 PF08497 Radical SAM N-terminal EEL44_12365 PF11842 Domain of unknown function (DUF3362) EEL44_12370 PF00563 EAL domain EEL44_12370 PF00990 Diguanylate cyclase, GGDEF domain EEL44_12370 PF03707 Bacterial signalling protein N terminal repeat EEL44_12375 PF00675 Insulinase (Peptidase family M16) EEL44_12375 PF05193 Peptidase M16 inactive domain EEL44_12390 PF03466 LysR substrate binding domain EEL44_12390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_12395 PF01717 Cobalamin-independent synthase, Catalytic domain EEL44_12395 PF08267 Cobalamin-independent synthase, N-terminal domain EEL44_12410 PF03795 YCII-related domain EEL44_12415 PF03061 Thioesterase superfamily EEL44_12420 PF04279 Intracellular septation protein A EEL44_12430 PF02698 DUF218 domain EEL44_12435 PF01370 NAD dependent epimerase/dehydratase family EEL44_12450 PF01226 Formate/nitrite transporter EEL44_12460 PF06796 Periplasmic nitrate reductase protein NapE EEL44_12465 PF03264 NapC/NirT cytochrome c family, N-terminal region EEL44_12470 PF01568 Molydopterin dinucleotide binding domain EEL44_12470 PF18364 Molybdopterin oxidoreductase N-terminal domain EEL44_12470 PF00384 Molybdopterin oxidoreductase EEL44_12495 PF02833 DHHA2 domain EEL44_12495 PF01368 DHH family EEL44_12510 PF00005 ABC transporter EEL44_12515 PF00005 ABC transporter EEL44_12515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_12520 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_12520 PF12911 N-terminal TM domain of oligopeptide transport permease C EEL44_12525 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_12530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEL44_12535 PF00158 Sigma-54 interaction domain EEL44_12535 PF02954 Bacterial regulatory protein, Fis family EEL44_12540 PF04012 PspA/IM30 family EEL44_12555 PF00529 HlyD membrane-fusion protein of T1SS EEL44_12555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEL44_12560 PF13533 Biotin-lipoyl like EEL44_12565 PF00873 AcrB/AcrD/AcrF family EEL44_12570 PF03352 Methyladenine glycosylase EEL44_12575 PF01053 Cys/Met metabolism PLP-dependent enzyme EEL44_12580 PF13396 Phospholipase_D-nuclease N-terminal EEL44_12580 PF13091 PLD-like domain EEL44_12590 PF00209 Sodium:neurotransmitter symporter family EEL44_12595 PF00849 RNA pseudouridylate synthase EEL44_12600 PF01066 CDP-alcohol phosphatidyltransferase EEL44_12605 PF00005 ABC transporter EEL44_12610 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_12615 PF13416 Bacterial extracellular solute-binding protein EEL44_12625 PF06945 Protein of unknown function (DUF1289) EEL44_12640 PF00005 ABC transporter EEL44_12645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEL44_12650 PF03222 Tryptophan/tyrosine permease family EEL44_12660 PF00571 CBS domain EEL44_12660 PF03448 MgtE intracellular N domain EEL44_12660 PF01769 Divalent cation transporter EEL44_12665 PF00512 His Kinase A (phospho-acceptor) domain EEL44_12665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_12665 PF09308 LuxQ, periplasmic EEL44_12665 PF00072 Response regulator receiver domain EEL44_12670 PF00563 EAL domain EEL44_12670 PF03707 Bacterial signalling protein N terminal repeat EEL44_12670 PF00990 Diguanylate cyclase, GGDEF domain EEL44_12680 PF04151 Bacterial pre-peptidase C-terminal domain EEL44_12680 PF08453 Peptidase family M9 N-terminal EEL44_12680 PF01752 Collagenase EEL44_12690 PF12793 Sugar transport-related sRNA regulator N-term EEL44_12690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEL44_12710 PF00672 HAMP domain EEL44_12710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_12710 PF12729 Four helix bundle sensory module for signal transduction EEL44_12725 PF00990 Diguanylate cyclase, GGDEF domain EEL44_12725 PF00563 EAL domain EEL44_12725 PF01590 GAF domain EEL44_12725 PF00360 Phytochrome region EEL44_12730 PF01386 Ribosomal L25p family EEL44_12740 PF00486 Transcriptional regulatory protein, C terminal EEL44_12740 PF00072 Response regulator receiver domain EEL44_12755 PF04851 Type III restriction enzyme, res subunit EEL44_12755 PF00271 Helicase conserved C-terminal domain EEL44_12760 PF01479 S4 domain EEL44_12760 PF00849 RNA pseudouridylate synthase EEL44_12765 PF07690 Major Facilitator Superfamily EEL44_12775 PF13460 NAD(P)H-binding EEL44_12775 PF11066 Protein of unknown function (DUF2867) EEL44_12780 PF01554 MatE EEL44_12785 PF00005 ABC transporter EEL44_12800 PF06965 Na+/H+ antiporter 1 EEL44_12810 PF00202 Aminotransferase class-III EEL44_12815 PF16653 Saccharopine dehydrogenase C-terminal domain EEL44_12815 PF03435 Saccharopine dehydrogenase NADP binding domain EEL44_12825 PF00691 OmpA family EEL44_12825 PF05736 OprF membrane domain EEL44_12830 PF02321 Outer membrane efflux protein EEL44_12850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_12850 PF03466 LysR substrate binding domain EEL44_12860 PF01863 Protein of unknown function DUF45 EEL44_12865 PF05971 RNA methyltransferase EEL44_12885 PF04204 Homoserine O-succinyltransferase EEL44_12905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEL44_12920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_12920 PF00989 PAS fold EEL44_12920 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EEL44_12920 PF17203 Single cache domain 3 EEL44_12925 PF00072 Response regulator receiver domain EEL44_12925 PF12431 Transcriptional regulator EEL44_12935 PF01584 CheW-like domain EEL44_12935 PF00072 Response regulator receiver domain EEL44_12955 PF00072 Response regulator receiver domain EEL44_12955 PF00990 Diguanylate cyclase, GGDEF domain EEL44_12975 PF07690 Major Facilitator Superfamily EEL44_12980 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain EEL44_12980 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain EEL44_12985 PF00288 GHMP kinases N terminal domain EEL44_12985 PF08544 GHMP kinases C terminal EEL44_12985 PF10509 Galactokinase galactose-binding signature EEL44_12990 PF01263 Aldose 1-epimerase EEL44_12995 PF00990 Diguanylate cyclase, GGDEF domain EEL44_13000 PF17154 Gammaproteobacterial periplasmic sensor domain EEL44_13000 PF00563 EAL domain EEL44_13000 PF00990 Diguanylate cyclase, GGDEF domain EEL44_13000 PF00672 HAMP domain EEL44_13010 PF00205 Thiamine pyrophosphate enzyme, central domain EEL44_13010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EEL44_13010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EEL44_13020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_13020 PF03466 LysR substrate binding domain EEL44_13030 PF00199 Catalase EEL44_13030 PF06628 Catalase-related immune-responsive EEL44_13040 PF00080 Copper/zinc superoxide dismutase (SODC) EEL44_13045 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) EEL44_13050 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EEL44_13050 PF00361 Proton-conducting membrane transporter EEL44_13055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_13055 PF03466 LysR substrate binding domain EEL44_13060 PF13193 AMP-binding enzyme C-terminal domain EEL44_13060 PF00501 AMP-binding enzyme EEL44_13090 PF00206 Lyase EEL44_13090 PF10415 Fumarase C C-terminus EEL44_13100 PF01654 Cytochrome bd terminal oxidase subunit I EEL44_13105 PF02322 Cytochrome bd terminal oxidase subunit II EEL44_13110 PF12704 MacB-like periplasmic core domain EEL44_13110 PF02687 FtsX-like permease family EEL44_13110 PF00005 ABC transporter EEL44_13115 PF12704 MacB-like periplasmic core domain EEL44_13115 PF02687 FtsX-like permease family EEL44_13115 PF00005 ABC transporter EEL44_13120 PF02687 FtsX-like permease family EEL44_13120 PF12704 MacB-like periplasmic core domain EEL44_13120 PF00005 ABC transporter EEL44_13130 PF00529 HlyD membrane-fusion protein of T1SS EEL44_13140 PF03466 LysR substrate binding domain EEL44_13140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_13145 PF00141 Peroxidase EEL44_13150 PF00232 Glycosyl hydrolase family 1 EEL44_13155 PF00356 Bacterial regulatory proteins, lacI family EEL44_13160 PF01042 Endoribonuclease L-PSP EEL44_13165 PF04074 YhcH/YjgK/YiaL EEL44_13170 PF03009 Glycerophosphoryl diester phosphodiesterase family EEL44_13175 PF00455 DeoR C terminal sensor domain EEL44_13175 PF08220 DeoR-like helix-turn-helix domain EEL44_13180 PF17912 MalK OB fold domain EEL44_13180 PF00005 ABC transporter EEL44_13185 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_13190 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_13195 PF13416 Bacterial extracellular solute-binding protein EEL44_13205 PF01618 MotA/TolQ/ExbB proton channel family EEL44_13210 PF01618 MotA/TolQ/ExbB proton channel family EEL44_13215 PF02472 Biopolymer transport protein ExbD/TolR EEL44_13220 PF03544 Gram-negative bacterial TonB protein C-terminal EEL44_13230 PF01068 ATP dependent DNA ligase domain EEL44_13230 PF14743 DNA ligase OB-like domain EEL44_13240 PF01554 MatE EEL44_13260 PF00877 NlpC/P60 family EEL44_13265 PF02743 Cache domain EEL44_13265 PF00672 HAMP domain EEL44_13265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_13280 PF00480 ROK family EEL44_13305 PF03454 MoeA C-terminal region (domain IV) EEL44_13305 PF03453 MoeA N-terminal region (domain I and II) EEL44_13305 PF00994 Probable molybdopterin binding domain EEL44_13310 PF12804 MobA-like NTP transferase domain EEL44_13315 PF08402 TOBE domain EEL44_13315 PF00005 ABC transporter EEL44_13320 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_13325 PF12849 PBP superfamily domain EEL44_13330 PF02954 Bacterial regulatory protein, Fis family EEL44_13330 PF00158 Sigma-54 interaction domain EEL44_13330 PF00072 Response regulator receiver domain EEL44_13335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_13335 PF00989 PAS fold EEL44_13335 PF00512 His Kinase A (phospho-acceptor) domain EEL44_13340 PF12848 ABC transporter EEL44_13340 PF00005 ABC transporter EEL44_13345 PF02634 FdhD/NarQ family EEL44_13365 PF02613 Nitrate reductase delta subunit EEL44_13375 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EEL44_13375 PF01568 Molydopterin dinucleotide binding domain EEL44_13375 PF00384 Molybdopterin oxidoreductase EEL44_13380 PF13247 4Fe-4S dicluster domain EEL44_13395 PF02146 Sir2 family EEL44_13400 PF04461 Protein of unknown function (DUF520) EEL44_13405 PF00793 DAHP synthetase I family EEL44_13420 PF13509 S1 domain EEL44_13420 PF17783 CvfB-like winged helix domain EEL44_13425 PF01189 16S rRNA methyltransferase RsmB/F EEL44_13425 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF EEL44_13425 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF EEL44_13430 PF02470 MlaD protein EEL44_13435 PF04403 Paraquat-inducible protein A EEL44_13440 PF00005 ABC transporter EEL44_13440 PF00664 ABC transporter transmembrane region EEL44_13445 PF13185 GAF domain EEL44_13450 PF04352 ProQ/FINO family EEL44_13450 PF17516 ProQ C-terminal domain EEL44_13455 PF17804 Tail specific protease N-terminal domain EEL44_13455 PF00595 PDZ domain EEL44_13455 PF11818 C-terminal domain of tail specific protease (DUF3340) EEL44_13455 PF03572 Peptidase family S41 EEL44_13465 PF11940 Domain of unknown function (DUF3458) Ig-like fold EEL44_13465 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EEL44_13465 PF01433 Peptidase family M1 domain EEL44_13475 PF05088 Bacterial NAD-glutamate dehydrogenase EEL44_13480 PF01180 Dihydroorotate dehydrogenase EEL44_13485 PF07126 Cell-division protein ZapC EEL44_13490 PF10672 S-adenosylmethionine-dependent methyltransferase EEL44_13490 PF02926 THUMP domain EEL44_13490 PF01170 Putative RNA methylase family UPF0020 EEL44_13510 PF04957 Ribosome modulation factor EEL44_13515 PF07977 FabA-like domain EEL44_13520 PF13654 AAA domain EEL44_13520 PF05362 Lon protease (S16) C-terminal proteolytic domain EEL44_13525 PF06303 MatP N-terminal domain EEL44_13525 PF17414 MatP C-terminal ribbon-helix-helix domain EEL44_13655 PF01381 Helix-turn-helix EEL44_13680 PF01381 Helix-turn-helix EEL44_13705 PF01381 Helix-turn-helix EEL44_13730 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII EEL44_13735 PF10734 Protein of unknown function (DUF2523) EEL44_13740 PF05707 Zonular occludens toxin (Zot) EEL44_13745 PF01375 Heat-labile enterotoxin alpha chain EEL44_13750 PF01376 Heat-labile enterotoxin beta chain EEL44_13755 PF11713 Peptidase C80 family EEL44_13755 PF12146 Serine aminopeptidase, S33 EEL44_13755 PF16671 Actin cross-linking domain EEL44_13755 PF07634 RtxA repeat EEL44_13755 PF11647 Membrane Localization Domain EEL44_13760 PF02794 RTX toxin acyltransferase family EEL44_13770 PF00664 ABC transporter transmembrane region EEL44_13770 PF03412 Peptidase C39 family EEL44_13770 PF00005 ABC transporter EEL44_13780 PF03412 Peptidase C39 family EEL44_13780 PF00005 ABC transporter EEL44_13780 PF00664 ABC transporter transmembrane region EEL44_13785 PF00072 Response regulator receiver domain EEL44_13785 PF09308 LuxQ, periplasmic EEL44_13785 PF00512 His Kinase A (phospho-acceptor) domain EEL44_13785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_13800 PF00115 Cytochrome C and Quinol oxidase polypeptide I EEL44_13815 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EEL44_13815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EEL44_13825 PF00403 Heavy-metal-associated domain EEL44_13840 PF00027 Cyclic nucleotide-binding domain EEL44_13840 PF13545 Crp-like helix-turn-helix domain EEL44_13845 PF00582 Universal stress protein family EEL44_13850 PF01171 PP-loop family EEL44_13870 PF00005 ABC transporter EEL44_13870 PF08402 TOBE domain EEL44_13875 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_13880 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_13885 PF13416 Bacterial extracellular solute-binding protein EEL44_13890 PF13416 Bacterial extracellular solute-binding protein EEL44_13905 PF01235 Sodium:alanine symporter family EEL44_13910 PF01810 LysE type translocator EEL44_13935 PF16671 Actin cross-linking domain EEL44_13935 PF04717 Type VI secretion system, phage-baseplate injector EEL44_13940 PF05638 Type VI secretion system effector, Hcp EEL44_13945 PF02074 Carboxypeptidase Taq (M32) metallopeptidase EEL44_13950 PF02743 Cache domain EEL44_13950 PF00672 HAMP domain EEL44_13950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_13955 PF07690 Major Facilitator Superfamily EEL44_13960 PF00529 HlyD membrane-fusion protein of T1SS EEL44_13960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEL44_13965 PF02321 Outer membrane efflux protein EEL44_13975 PF00270 DEAD/DEAH box helicase EEL44_13975 PF00271 Helicase conserved C-terminal domain EEL44_13980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_13980 PF08447 PAS fold EEL44_13980 PF13426 PAS domain EEL44_13985 PF00672 HAMP domain EEL44_13985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_13985 PF12729 Four helix bundle sensory module for signal transduction EEL44_13990 PF17202 Single cache domain 3 EEL44_13990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_13990 PF00672 HAMP domain EEL44_13995 PF01584 CheW-like domain EEL44_14000 PF01339 CheB methylesterase EEL44_14000 PF00072 Response regulator receiver domain EEL44_14010 PF03705 CheR methyltransferase, all-alpha domain EEL44_14010 PF01739 CheR methyltransferase, SAM binding domain EEL44_14015 PF01584 CheW-like domain EEL44_14015 PF00072 Response regulator receiver domain EEL44_14015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_14015 PF01627 Hpt domain EEL44_14020 PF07194 P2 response regulator binding domain EEL44_14020 PF02895 Signal transducing histidine kinase, homodimeric domain EEL44_14020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_14020 PF01627 Hpt domain EEL44_14020 PF01584 CheW-like domain EEL44_14035 PF00672 HAMP domain EEL44_14035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_14040 PF00893 Small Multidrug Resistance protein EEL44_14045 PF00875 DNA photolyase EEL44_14045 PF03441 FAD binding domain of DNA photolyase EEL44_14050 PF07690 Major Facilitator Superfamily EEL44_14055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_14055 PF03466 LysR substrate binding domain EEL44_14065 PF10437 Bacterial lipoate protein ligase C-terminus EEL44_14065 PF03099 Biotin/lipoate A/B protein ligase family EEL44_14070 PF00012 Hsp70 protein EEL44_14080 PF04408 Helicase associated domain (HA2) EEL44_14080 PF11898 Domain of unknown function (DUF3418) EEL44_14080 PF00271 Helicase conserved C-terminal domain EEL44_14080 PF00270 DEAD/DEAH box helicase EEL44_14080 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold EEL44_14105 PF00563 EAL domain EEL44_14105 PF00990 Diguanylate cyclase, GGDEF domain EEL44_14105 PF03707 Bacterial signalling protein N terminal repeat EEL44_14120 PF00012 Hsp70 protein EEL44_14125 PF00012 Hsp70 protein EEL44_14130 PF00990 Diguanylate cyclase, GGDEF domain EEL44_14130 PF17158 Membrane-associated sensor, integral membrane domain EEL44_14140 PF03707 Bacterial signalling protein N terminal repeat EEL44_14140 PF00990 Diguanylate cyclase, GGDEF domain EEL44_14140 PF00563 EAL domain EEL44_14160 PF06508 Queuosine biosynthesis protein QueC EEL44_14165 PF04055 Radical SAM superfamily EEL44_14175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EEL44_14175 PF10414 Sirohaem synthase dimerisation region EEL44_14175 PF14824 Sirohaem biosynthesis protein central EEL44_14180 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEL44_14185 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_14190 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_14195 PF00005 ABC transporter EEL44_14200 PF01027 Inhibitor of apoptosis-promoting Bax1 EEL44_14205 PF04358 DsrC like protein EEL44_14210 PF00708 Acylphosphatase EEL44_14215 PF17785 PUA-like domain EEL44_14215 PF10672 S-adenosylmethionine-dependent methyltransferase EEL44_14220 PF00990 Diguanylate cyclase, GGDEF domain EEL44_14230 PF08534 Redoxin EEL44_14230 PF00462 Glutaredoxin EEL44_14235 PF00072 Response regulator receiver domain EEL44_14235 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EEL44_14235 PF01627 Hpt domain EEL44_14235 PF00512 His Kinase A (phospho-acceptor) domain EEL44_14235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_14235 PF00672 HAMP domain EEL44_14240 PF00072 Response regulator receiver domain EEL44_14245 PF02798 Glutathione S-transferase, N-terminal domain EEL44_14245 PF14497 Glutathione S-transferase, C-terminal domain EEL44_14255 PF04209 homogentisate 1,2-dioxygenase EEL44_14260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_14265 PF01546 Peptidase family M20/M25/M40 EEL44_14265 PF07687 Peptidase dimerisation domain EEL44_14280 PF00501 AMP-binding enzyme EEL44_14280 PF13193 AMP-binding enzyme C-terminal domain EEL44_14280 PF16177 Acetyl-coenzyme A synthetase N-terminus EEL44_14285 PF04303 PrpF protein EEL44_14290 PF00330 Aconitase family (aconitate hydratase) EEL44_14290 PF00694 Aconitase C-terminal domain EEL44_14295 PF00285 Citrate synthase, C-terminal domain EEL44_14305 PF00392 Bacterial regulatory proteins, gntR family EEL44_14305 PF07729 FCD domain EEL44_14320 PF01970 Tripartite tricarboxylate transporter TctA family EEL44_14340 PF02653 Branched-chain amino acid transport system / permease component EEL44_14345 PF00005 ABC transporter EEL44_14350 PF13407 Periplasmic binding protein domain EEL44_14375 PF00486 Transcriptional regulatory protein, C terminal EEL44_14375 PF00072 Response regulator receiver domain EEL44_14380 PF00672 HAMP domain EEL44_14380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_14380 PF00512 His Kinase A (phospho-acceptor) domain EEL44_14385 PF06629 MltA-interacting protein MipA EEL44_14390 PF04393 Protein of unknown function (DUF535) EEL44_14395 PF00158 Sigma-54 interaction domain EEL44_14395 PF00072 Response regulator receiver domain EEL44_14395 PF02954 Bacterial regulatory protein, Fis family EEL44_14400 PF00512 His Kinase A (phospho-acceptor) domain EEL44_14400 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEL44_14400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_14405 PF00939 Sodium:sulfate symporter transmembrane region EEL44_14410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_14410 PF00672 HAMP domain EEL44_14415 PF01168 Alanine racemase, N-terminal domain EEL44_14415 PF00842 Alanine racemase, C-terminal domain EEL44_14420 PF00892 EamA-like transporter family EEL44_14435 PF13302 Acetyltransferase (GNAT) domain EEL44_14440 PF00158 Sigma-54 interaction domain EEL44_14440 PF18024 Helix-turn-helix domain EEL44_14445 PF05128 Domain of unknown function (DUF697) EEL44_14450 PF04317 YcjX-like family, DUF463 EEL44_14465 PF04715 Anthranilate synthase component I, N terminal region EEL44_14465 PF00425 chorismate binding enzyme EEL44_14470 PF00293 NUDIX domain EEL44_14475 PF03222 Tryptophan/tyrosine permease family EEL44_14480 PF03313 Serine dehydratase alpha chain EEL44_14480 PF03315 Serine dehydratase beta chain EEL44_14485 PF01242 6-pyruvoyl tetrahydropterin synthase EEL44_14490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_14490 PF00672 HAMP domain EEL44_14495 PF01336 OB-fold nucleic acid binding domain EEL44_14495 PF00152 tRNA synthetases class II (D, K and N) EEL44_14500 PF08543 Phosphomethylpyrimidine kinase EEL44_14505 PF01966 HD domain EEL44_14505 PF00672 HAMP domain EEL44_14515 PF00155 Aminotransferase class I and II EEL44_14530 PF00672 HAMP domain EEL44_14530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_14530 PF17200 Single Cache domain 2 EEL44_14535 PF04349 Periplasmic glucan biosynthesis protein, MdoG EEL44_14540 PF13506 Glycosyl transferase family 21 EEL44_14545 PF00356 Bacterial regulatory proteins, lacI family EEL44_14550 PF04794 YdjC-like protein EEL44_14555 PF02056 Family 4 glycosyl hydrolase EEL44_14555 PF11975 Family 4 glycosyl hydrolase C-terminal domain EEL44_14560 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EEL44_14565 PF02378 Phosphotransferase system, EIIC EEL44_14570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EEL44_14575 PF01522 Polysaccharide deacetylase EEL44_14580 PF02028 BCCT, betaine/carnitine/choline family transporter EEL44_14585 PF01047 MarR family EEL44_14590 PF00072 Response regulator receiver domain EEL44_14590 PF00196 Bacterial regulatory proteins, luxR family EEL44_14595 PF17200 Single Cache domain 2 EEL44_14595 PF07730 Histidine kinase EEL44_14605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EEL44_14615 PF03480 Bacterial extracellular solute-binding protein, family 7 EEL44_14630 PF00753 Metallo-beta-lactamase superfamily EEL44_14635 PF05951 Bacterial protein of unknown function (DUF882) EEL44_14640 PF01471 Putative peptidoglycan binding domain EEL44_14640 PF03734 L,D-transpeptidase catalytic domain EEL44_14665 PF00925 GTP cyclohydrolase II EEL44_14675 PF07690 Major Facilitator Superfamily EEL44_14690 PF03989 DNA gyrase C-terminal domain, beta-propeller EEL44_14690 PF00521 DNA gyrase/topoisomerase IV, subunit A EEL44_14700 PF00317 Ribonucleotide reductase, all-alpha domain EEL44_14700 PF02867 Ribonucleotide reductase, barrel domain EEL44_14700 PF03477 ATP cone domain EEL44_14705 PF00268 Ribonucleotide reductase, small chain EEL44_14710 PF00175 Oxidoreductase NAD-binding domain EEL44_14710 PF00111 2Fe-2S iron-sulfur cluster binding domain EEL44_14710 PF00970 Oxidoreductase FAD-binding domain EEL44_14725 PF00994 Probable molybdopterin binding domain EEL44_14740 PF17200 Single Cache domain 2 EEL44_14740 PF00672 HAMP domain EEL44_14740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_14755 PF00005 ABC transporter EEL44_14760 PF01032 FecCD transport family EEL44_14765 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EEL44_14775 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EEL44_14780 PF02654 Cobalamin-5-phosphate synthase EEL44_14785 PF02277 Phosphoribosyltransferase EEL44_14790 PF01641 SelR domain EEL44_14800 PF00929 Exonuclease EEL44_14800 PF08411 Exonuclease C-terminal EEL44_14805 PF03788 LrgA family EEL44_14810 PF04172 LrgB-like family EEL44_14815 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region EEL44_14815 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EEL44_14825 PF02222 ATP-grasp domain EEL44_14835 PF05724 Thiopurine S-methyltransferase (TPMT) EEL44_14850 PF00216 Bacterial DNA-binding protein EEL44_14855 PF03484 tRNA synthetase B5 domain EEL44_14855 PF03147 Ferredoxin-fold anticodon binding domain EEL44_14855 PF01588 Putative tRNA binding domain EEL44_14855 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EEL44_14855 PF03483 B3/4 domain EEL44_14860 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EEL44_14860 PF01409 tRNA synthetases class II core domain (F) EEL44_14870 PF00990 Diguanylate cyclase, GGDEF domain EEL44_14870 PF00072 Response regulator receiver domain EEL44_14895 PF01066 CDP-alcohol phosphatidyltransferase EEL44_14900 PF08459 UvrC Helix-hairpin-helix N-terminal EEL44_14900 PF02151 UvrB/uvrC motif EEL44_14900 PF01541 GIY-YIG catalytic domain EEL44_14905 PF00196 Bacterial regulatory proteins, luxR family EEL44_14905 PF00072 Response regulator receiver domain EEL44_14910 PF00136 DNA polymerase family B EEL44_14910 PF03104 DNA polymerase family B, exonuclease domain EEL44_14915 PF00990 Diguanylate cyclase, GGDEF domain EEL44_14915 PF00563 EAL domain EEL44_14915 PF13426 PAS domain EEL44_14925 PF01132 Elongation factor P (EF-P) OB domain EEL44_14925 PF09285 Elongation factor P, C-terminal EEL44_14925 PF08207 Elongation factor P (EF-P) KOW-like domain EEL44_14930 PF04269 Protein of unknown function, DUF440 EEL44_14940 PF07702 UTRA domain EEL44_14940 PF00392 Bacterial regulatory proteins, gntR family EEL44_14945 PF01979 Amidohydrolase family EEL44_14950 PF00491 Arginase family EEL44_14955 PF17392 Urocanase C-terminal domain EEL44_14955 PF17391 Urocanase N-terminal domain EEL44_14955 PF01175 Urocanase Rossmann-like domain EEL44_14960 PF00221 Aromatic amino acid lyase EEL44_14970 PF00089 Trypsin EEL44_14975 PF04191 Phospholipid methyltransferase EEL44_14980 PF02913 FAD linked oxidases, C-terminal domain EEL44_14980 PF13183 4Fe-4S dicluster domain EEL44_14980 PF01565 FAD binding domain EEL44_14995 PF13488 Glycine zipper EEL44_14995 PF00691 OmpA family EEL44_15015 PF01259 SAICAR synthetase EEL44_15025 PF03949 Malic enzyme, NAD binding domain EEL44_15025 PF00390 Malic enzyme, N-terminal domain EEL44_15035 PF02698 DUF218 domain EEL44_15045 PF00266 Aminotransferase class-V EEL44_15055 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_15060 PF00005 ABC transporter EEL44_15060 PF00664 ABC transporter transmembrane region EEL44_15065 PF00005 ABC transporter EEL44_15065 PF00664 ABC transporter transmembrane region EEL44_15070 PF01479 S4 domain EEL44_15070 PF00849 RNA pseudouridylate synthase EEL44_15075 PF01300 Telomere recombination EEL44_15080 PF02811 PHP domain EEL44_15085 PF08056 Tryptophan operon leader peptide EEL44_15090 PF04715 Anthranilate synthase component I, N terminal region EEL44_15090 PF00425 chorismate binding enzyme EEL44_15095 PF00117 Glutamine amidotransferase class-I EEL44_15100 PF02885 Glycosyl transferase family, helical bundle domain EEL44_15100 PF00591 Glycosyl transferase family, a/b domain EEL44_15105 PF00218 Indole-3-glycerol phosphate synthase EEL44_15105 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EEL44_15110 PF00291 Pyridoxal-phosphate dependent enzyme EEL44_15115 PF00290 Tryptophan synthase alpha chain EEL44_15120 PF00375 Sodium:dicarboxylate symporter family EEL44_15125 PF00265 Thymidine kinase EEL44_15130 PF02938 GAD domain EEL44_15130 PF01336 OB-fold nucleic acid binding domain EEL44_15130 PF00152 tRNA synthetases class II (D, K and N) EEL44_15135 PF01904 Protein of unknown function DUF72 EEL44_15140 PF13649 Methyltransferase domain EEL44_15145 PF08003 Protein of unknown function (DUF1698) EEL44_15165 PF00266 Aminotransferase class-V EEL44_15175 PF00989 PAS fold EEL44_15175 PF00512 His Kinase A (phospho-acceptor) domain EEL44_15175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_15190 PF04993 TfoX N-terminal domain EEL44_15190 PF04994 TfoX C-terminal domain EEL44_15200 PF03956 Lysine exporter LysO EEL44_15210 PF00282 Pyridoxal-dependent decarboxylase conserved domain EEL44_15215 PF01418 Helix-turn-helix domain, rpiR family EEL44_15215 PF01380 SIS domain EEL44_15220 PF00465 Iron-containing alcohol dehydrogenase EEL44_15220 PF00171 Aldehyde dehydrogenase family EEL44_15225 PF00462 Glutaredoxin EEL44_15230 PF06826 Predicted Permease Membrane Region EEL44_15230 PF02080 TrkA-C domain EEL44_15235 PF02861 Clp amino terminal domain, pathogenicity island component EEL44_15235 PF07724 AAA domain (Cdc48 subfamily) EEL44_15235 PF10431 C-terminal, D2-small domain, of ClpB protein EEL44_15235 PF00004 ATPase family associated with various cellular activities (AAA) EEL44_15235 PF17871 AAA lid domain EEL44_15240 PF02617 ATP-dependent Clp protease adaptor protein ClpS EEL44_15245 PF00313 'Cold-shock' DNA-binding domain EEL44_15250 PF03971 Monomeric isocitrate dehydrogenase EEL44_15255 PF00849 RNA pseudouridylate synthase EEL44_15260 PF01502 Phosphoribosyl-AMP cyclohydrolase EEL44_15260 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EEL44_15265 PF00977 Histidine biosynthesis protein EEL44_15270 PF00977 Histidine biosynthesis protein EEL44_15275 PF00117 Glutamine amidotransferase class-I EEL44_15280 PF00475 Imidazoleglycerol-phosphate dehydratase EEL44_15280 PF08645 Polynucleotide kinase 3 phosphatase EEL44_15285 PF00155 Aminotransferase class I and II EEL44_15290 PF00815 Histidinol dehydrogenase EEL44_15295 PF01634 ATP phosphoribosyltransferase EEL44_15295 PF08029 HisG, C-terminal domain EEL44_15300 PF03553 Na+/H+ antiporter family EEL44_15305 PF00816 H-NS histone family EEL44_15310 PF00294 pfkB family carbohydrate kinase EEL44_15320 PF04356 Protein of unknown function (DUF489) EEL44_15325 PF08328 Adenylosuccinate lyase C-terminal EEL44_15325 PF00206 Lyase EEL44_15335 PF16036 Chalcone isomerase-like EEL44_15360 PF00106 short chain dehydrogenase EEL44_15370 PF01435 Peptidase family M48 EEL44_15385 PF08241 Methyltransferase domain EEL44_15390 PF00155 Aminotransferase class I and II EEL44_15395 PF06968 Biotin and Thiamin Synthesis associated domain EEL44_15395 PF04055 Radical SAM superfamily EEL44_15400 PF00202 Aminotransferase class-III EEL44_15405 PF02403 Seryl-tRNA synthetase N-terminal domain EEL44_15405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EEL44_15410 PF12002 MgsA AAA+ ATPase C terminal EEL44_15410 PF16193 AAA C-terminal domain EEL44_15410 PF00004 ATPase family associated with various cellular activities (AAA) EEL44_15415 PF03548 Outer membrane lipoprotein carrier protein LolA EEL44_15420 PF01043 SecA preprotein cross-linking domain EEL44_15420 PF07517 SecA DEAD-like domain EEL44_15420 PF07516 SecA Wing and Scaffold domain EEL44_15420 PF02810 SEC-C motif EEL44_15425 PF01207 Dihydrouridine synthase (Dus) EEL44_15430 PF00990 Diguanylate cyclase, GGDEF domain EEL44_15435 PF00005 ABC transporter EEL44_15440 PF02653 Branched-chain amino acid transport system / permease component EEL44_15450 PF09905 DNA-binding protein VF530 EEL44_15455 PF04217 Protein of unknown function, DUF412 EEL44_15460 PF00871 Acetokinase family EEL44_15465 PF07085 DRTGG domain EEL44_15465 PF01515 Phosphate acetyl/butaryl transferase EEL44_15470 PF13409 Glutathione S-transferase, N-terminal domain EEL44_15475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_15475 PF00005 ABC transporter EEL44_15480 PF00005 ABC transporter EEL44_15480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_15485 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_15485 PF12911 N-terminal TM domain of oligopeptide transport permease C EEL44_15490 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_15495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEL44_15505 PF00072 Response regulator receiver domain EEL44_15505 PF00512 His Kinase A (phospho-acceptor) domain EEL44_15505 PF13188 PAS domain EEL44_15505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_15505 PF08448 PAS fold EEL44_15510 PF02954 Bacterial regulatory protein, Fis family EEL44_15510 PF00158 Sigma-54 interaction domain EEL44_15510 PF00072 Response regulator receiver domain EEL44_15515 PF00563 EAL domain EEL44_15515 PF00990 Diguanylate cyclase, GGDEF domain EEL44_15515 PF03707 Bacterial signalling protein N terminal repeat EEL44_15515 PF13188 PAS domain EEL44_15520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_15520 PF00512 His Kinase A (phospho-acceptor) domain EEL44_15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_15525 PF00512 His Kinase A (phospho-acceptor) domain EEL44_15525 PF00989 PAS fold EEL44_15525 PF13426 PAS domain EEL44_15525 PF13188 PAS domain EEL44_15535 PF00072 Response regulator receiver domain EEL44_15550 PF03481 Putative GTP-binding controlling metal-binding EEL44_15550 PF01300 Telomere recombination EEL44_15570 PF01161 Phosphatidylethanolamine-binding protein EEL44_15580 PF00704 Glycosyl hydrolases family 18 EEL44_15580 PF06483 Chitinase C EEL44_15595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EEL44_15595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EEL44_15600 PF01022 Bacterial regulatory protein, arsR family EEL44_15610 PF00990 Diguanylate cyclase, GGDEF domain EEL44_15610 PF08448 PAS fold EEL44_15620 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EEL44_15635 PF01037 Lrp/AsnC ligand binding domain EEL44_15635 PF13404 AsnC-type helix-turn-helix domain EEL44_15640 PF00291 Pyridoxal-phosphate dependent enzyme EEL44_15645 PF01343 Peptidase family S49 EEL44_15645 PF08496 Peptidase family S49 N-terminal EEL44_15650 PF00106 short chain dehydrogenase EEL44_15655 PF03692 Putative zinc- or iron-chelating domain EEL44_15660 PF03692 Putative zinc- or iron-chelating domain EEL44_15665 PF02132 RecR protein EEL44_15665 PF13662 Toprim domain EEL44_15670 PF02575 YbaB/EbfC DNA-binding family EEL44_15675 PF12170 DNA polymerase III tau subunit V interacting with alpha EEL44_15675 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EEL44_15675 PF12169 DNA polymerase III subunits gamma and tau domain III EEL44_15680 PF00156 Phosphoribosyl transferase domain EEL44_15685 PF04304 Protein of unknown function (DUF454) EEL44_15695 PF00072 Response regulator receiver domain EEL44_15700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_15700 PF03466 LysR substrate binding domain EEL44_15705 PF00881 Nitroreductase family EEL44_15710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EEL44_15710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EEL44_15710 PF00378 Enoyl-CoA hydratase/isomerase EEL44_15715 PF00108 Thiolase, N-terminal domain EEL44_15715 PF02803 Thiolase, C-terminal domain EEL44_15725 PF08281 Sigma-70, region 4 EEL44_15725 PF04542 Sigma-70 region 2 EEL44_15735 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EEL44_15740 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) EEL44_15745 PF01451 Low molecular weight phosphotyrosine protein phosphatase EEL44_15750 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP EEL44_15750 PF12557 Cob(I)alamin adenosyltransferase N terminal EEL44_15755 PF05170 AsmA family EEL44_15760 PF00485 Phosphoribulokinase / Uridine kinase family EEL44_15770 PF10609 NUBPL iron-transfer P-loop NTPase EEL44_15775 PF01588 Putative tRNA binding domain EEL44_15775 PF09334 tRNA synthetases class I (M) EEL44_15785 PF01048 Phosphorylase superfamily EEL44_15790 PF00403 Heavy-metal-associated domain EEL44_15800 PF00392 Bacterial regulatory proteins, gntR family EEL44_15800 PF07085 DRTGG domain EEL44_15800 PF00571 CBS domain EEL44_15800 PF03061 Thioesterase superfamily EEL44_15805 PF00990 Diguanylate cyclase, GGDEF domain EEL44_15805 PF07694 5TMR of 5TMR-LYT EEL44_15810 PF02391 MoaE protein EEL44_15815 PF02597 ThiS family EEL44_15820 PF01967 MoaC family EEL44_15825 PF00994 Probable molybdopterin binding domain EEL44_15830 PF06463 Molybdenum Cofactor Synthesis C EEL44_15830 PF04055 Radical SAM superfamily EEL44_15835 PF01933 Uncharacterised protein family UPF0052 EEL44_15840 PF01627 Hpt domain EEL44_15845 PF02954 Bacterial regulatory protein, Fis family EEL44_15845 PF00072 Response regulator receiver domain EEL44_15845 PF00158 Sigma-54 interaction domain EEL44_15855 PF17757 UvrB interaction domain EEL44_15855 PF04851 Type III restriction enzyme, res subunit EEL44_15855 PF02151 UvrB/uvrC motif EEL44_15855 PF12344 Ultra-violet resistance protein B EEL44_15855 PF00271 Helicase conserved C-terminal domain EEL44_15865 PF02508 Rnf-Nqr subunit, membrane protein EEL44_15870 PF04060 Putative Fe-S cluster EEL44_15875 PF10531 SLBB domain EEL44_15875 PF12838 4Fe-4S dicluster domain EEL44_15875 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EEL44_15875 PF13375 RnfC Barrel sandwich hybrid domain EEL44_15880 PF03116 NQR2, RnfD, RnfE family EEL44_15885 PF04205 FMN-binding domain EEL44_15890 PF02508 Rnf-Nqr subunit, membrane protein EEL44_15895 PF00730 HhH-GPD superfamily base excision DNA repair protein EEL44_15895 PF00633 Helix-hairpin-helix motif EEL44_15895 PF10576 Iron-sulfur binding domain of endonuclease III EEL44_15900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EEL44_15905 PF10952 Protein of unknown function (DUF2753) EEL44_15910 PF00691 OmpA family EEL44_15910 PF18393 MotY N-terminal domain EEL44_15915 PF00929 Exonuclease EEL44_15920 PF13726 Na+-H+ antiporter family EEL44_15920 PF03553 Na+/H+ antiporter family EEL44_15925 PF00156 Phosphoribosyl transferase domain EEL44_15930 PF02674 Colicin V production protein EEL44_15935 PF05036 Sporulation related domain EEL44_15940 PF08245 Mur ligase middle domain EEL44_15940 PF02875 Mur ligase family, glutamate ligase domain EEL44_15945 PF01039 Carboxyl transferase domain EEL44_15945 PF17848 Acetyl-coA carboxylase zinc finger domain EEL44_15950 PF01416 tRNA pseudouridine synthase EEL44_15960 PF00749 tRNA synthetases class I (E and Q), catalytic domain EEL44_15960 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain EEL44_15965 PF00367 phosphotransferase system, EIIB EEL44_15965 PF02378 Phosphotransferase system, EIIC EEL44_15965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EEL44_15970 PF01979 Amidohydrolase family EEL44_15975 PF01047 MarR family EEL44_15975 PF00480 ROK family EEL44_15980 PF00999 Sodium/hydrogen exchanger family EEL44_15980 PF02254 TrkA-N domain EEL44_15985 PF13537 Glutamine amidotransferase domain EEL44_15985 PF00733 Asparagine synthase EEL44_15990 PF02357 Transcription termination factor nusG EEL44_15995 PF00854 POT family EEL44_16000 PF00762 Ferrochelatase EEL44_16005 PF05191 Adenylate kinase, active site lid EEL44_16010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_16010 PF00183 Hsp90 protein EEL44_16020 PF00872 Transposase, Mutator family EEL44_16030 PF17323 Trans-membrane regulatory protein ToxS EEL44_16040 PF12850 Calcineurin-like phosphoesterase superfamily domain EEL44_16045 PF08338 Domain of unknown function (DUF1731) EEL44_16045 PF01370 NAD dependent epimerase/dehydratase family EEL44_16050 PF00106 short chain dehydrogenase EEL44_16060 PF00085 Thioredoxin EEL44_16065 PF01145 SPFH domain / Band 7 family EEL44_16065 PF16200 C-terminal region of band_7 EEL44_16070 PF01957 NfeD-like C-terminal, partner-binding EEL44_16075 PF13411 MerR HTH family regulatory protein EEL44_16085 PF13609 Gram-negative porin EEL44_16095 PF12826 Helix-hairpin-helix motif EEL44_16095 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EEL44_16095 PF03120 NAD-dependent DNA ligase OB-fold domain EEL44_16095 PF00533 BRCA1 C Terminus (BRCT) domain EEL44_16095 PF01653 NAD-dependent DNA ligase adenylation domain EEL44_16100 PF04354 ZipA, C-terminal FtsZ-binding domain EEL44_16110 PF00291 Pyridoxal-phosphate dependent enzyme EEL44_16120 PF00381 PTS HPr component phosphorylation site EEL44_16125 PF02896 PEP-utilising enzyme, TIM barrel domain EEL44_16125 PF00391 PEP-utilising enzyme, mobile domain EEL44_16125 PF05524 PEP-utilising enzyme, N-terminal EEL44_16130 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EEL44_16135 PF01494 FAD binding domain EEL44_16140 PF04055 Radical SAM superfamily EEL44_16140 PF00919 Uncharacterized protein family UPF0004 EEL44_16140 PF01938 TRAM domain EEL44_16145 PF02562 PhoH-like protein EEL44_16150 PF02130 Uncharacterized protein family UPF0054 EEL44_16155 PF03471 Transporter associated domain EEL44_16155 PF00571 CBS domain EEL44_16160 PF00795 Carbon-nitrogen hydrolase EEL44_16165 PF07295 Zinc-ribbon containing domain EEL44_16170 PF13603 Leucyl-tRNA synthetase, Domain 2 EEL44_16170 PF00133 tRNA synthetases class I (I, L, M and V) EEL44_16170 PF08264 Anticodon-binding domain of tRNA EEL44_16175 PF04390 Lipopolysaccharide-assembly EEL44_16180 PF06144 DNA polymerase III, delta subunit EEL44_16180 PF14840 Processivity clamp loader gamma complex DNA pol III C-term EEL44_16190 PF02590 Predicted SPOUT methyltransferase EEL44_16195 PF00905 Penicillin binding protein transpeptidase domain EEL44_16195 PF03717 Penicillin-binding Protein dimerisation domain EEL44_16200 PF01098 Cell cycle protein EEL44_16205 PF03330 Lytic transglycolase EEL44_16205 PF05036 Sporulation related domain EEL44_16210 PF07943 Penicillin-binding protein 5, C-terminal domain EEL44_16210 PF00768 D-alanyl-D-alanine carboxypeptidase EEL44_16215 PF04359 Protein of unknown function (DUF493) EEL44_16220 PF03099 Biotin/lipoate A/B protein ligase family EEL44_16225 PF04055 Radical SAM superfamily EEL44_16225 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EEL44_16235 PF00464 Serine hydroxymethyltransferase EEL44_16255 PF13807 G-rich domain on putative tyrosine kinase EEL44_16255 PF02706 Chain length determinant protein EEL44_16255 PF13614 AAA domain EEL44_16260 PF02563 Polysaccharide biosynthesis/export protein EEL44_16260 PF10531 SLBB domain EEL44_16260 PF18412 Outer-membrane lipoprotein Wza C-terminal domain EEL44_16270 PF02397 Bacterial sugar transferase EEL44_16285 PF17945 Beta/Gamma crystallin EEL44_16285 PF12561 ToxR activated gene A lipoprotein domain EEL44_16300 PF03808 Glycosyl transferase WecB/TagA/CpsF family EEL44_16310 PF00534 Glycosyl transferases group 1 EEL44_16310 PF00862 Sucrose synthase EEL44_16320 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_16340 PF12464 Maltose acetyltransferase EEL44_16340 PF14602 Hexapeptide repeat of succinyl-transferase EEL44_16345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EEL44_16345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EEL44_16345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EEL44_16350 PF02350 UDP-N-acetylglucosamine 2-epimerase EEL44_16355 PF01451 Low molecular weight phosphotyrosine protein phosphatase EEL44_16360 PF00873 AcrB/AcrD/AcrF family EEL44_16365 PF13533 Biotin-lipoyl like EEL44_16390 PF16657 Maltogenic Amylase, C-terminal domain EEL44_16390 PF00128 Alpha amylase, catalytic domain EEL44_16395 PF02378 Phosphotransferase system, EIIC EEL44_16395 PF00367 phosphotransferase system, EIIB EEL44_16400 PF00356 Bacterial regulatory proteins, lacI family EEL44_16410 PF09383 NIL domain EEL44_16410 PF00005 ABC transporter EEL44_16415 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_16420 PF03180 NLPA lipoprotein EEL44_16425 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) EEL44_16430 PF07348 Syd protein (SUKH-2) EEL44_16435 PF14489 QueF-like protein EEL44_16435 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term EEL44_16445 PF00990 Diguanylate cyclase, GGDEF domain EEL44_16450 PF11892 Domain of unknown function (DUF3412) EEL44_16450 PF03641 Possible lysine decarboxylase EEL44_16450 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases EEL44_16455 PF01367 5'-3' exonuclease, C-terminal SAM fold EEL44_16455 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EEL44_16460 PF04241 Protein of unknown function (DUF423) EEL44_16465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_16465 PF03466 LysR substrate binding domain EEL44_16470 PF02568 Thiamine biosynthesis protein (ThiI) EEL44_16470 PF02926 THUMP domain EEL44_16475 PF00691 OmpA family EEL44_16475 PF13677 Membrane MotB of proton-channel complex MotA/MotB EEL44_16480 PF01618 MotA/TolQ/ExbB proton channel family EEL44_16485 PF02609 Exonuclease VII small subunit EEL44_16490 PF00348 Polyprenyl synthetase EEL44_16495 PF02779 Transketolase, pyrimidine binding domain EEL44_16495 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EEL44_16495 PF02780 Transketolase, C-terminal domain EEL44_16500 PF00849 RNA pseudouridylate synthase EEL44_16505 PF04287 tRNA pseudouridine synthase C EEL44_16520 PF13302 Acetyltransferase (GNAT) domain EEL44_16530 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EEL44_16535 PF03806 AbgT putative transporter family EEL44_16540 PF00444 Ribosomal protein L36 EEL44_16545 PF01197 Ribosomal protein L31 EEL44_16550 PF01980 tRNA-methyltransferase O EEL44_16550 PF18389 TrmO C-terminal domain EEL44_16555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EEL44_16555 PF04073 Aminoacyl-tRNA editing domain EEL44_16555 PF03129 Anticodon binding domain EEL44_16565 PF06786 Uncharacterised protein family (UPF0253) EEL44_16575 PF01797 Transposase IS200 like EEL44_16580 PF02769 AIR synthase related protein, C-terminal domain EEL44_16580 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EEL44_16580 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal EEL44_16590 PF01464 Transglycosylase SLT domain EEL44_16590 PF00497 Bacterial extracellular solute-binding proteins, family 3 EEL44_16595 PF14437 MafB19-like deaminase EEL44_16600 PF03806 AbgT putative transporter family EEL44_16625 PF14245 Type IV pilin PilA EEL44_16625 PF07963 Prokaryotic N-terminal methylation motif EEL44_16630 PF07963 Prokaryotic N-terminal methylation motif EEL44_16630 PF00114 Pilin (bacterial filament) EEL44_16635 PF01556 DnaJ C terminal domain EEL44_16635 PF00226 DnaJ domain EEL44_16635 PF00684 DnaJ central domain EEL44_16640 PF00012 Hsp70 protein EEL44_16645 PF01025 GrpE EEL44_16650 PF01513 ATP-NAD kinase EEL44_16655 PF02463 RecF/RecN/SMC N terminal domain EEL44_16660 PF04355 SmpA / OmlA family EEL44_16665 PF03658 RnfH family Ubiquitin EEL44_16670 PF03364 Polyketide cyclase / dehydrase and lipid transport EEL44_16675 PF01668 SmpB protein EEL44_16685 PF00589 Phage integrase family EEL44_16685 PF13356 Arm DNA-binding domain EEL44_16695 PF13356 Arm DNA-binding domain EEL44_16695 PF00589 Phage integrase family EEL44_16700 PF13322 Domain of unknown function (DUF4092) EEL44_16700 PF17291 N-terminal domain of M60-like peptidases EEL44_16700 PF13402 Peptidase M60, enhancin and enhancin-like EEL44_16710 PF01551 Peptidase family M23 EEL44_16710 PF04225 Opacity-associated protein A LysM-like domain EEL44_16725 PF00672 HAMP domain EEL44_16725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_16725 PF02743 Cache domain EEL44_16730 PF06750 Bacterial Peptidase A24 N-terminal domain EEL44_16730 PF01478 Type IV leader peptidase family EEL44_16735 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family EEL44_16745 PF00482 Type II secretion system (T2SS), protein F EEL44_16750 PF00437 Type II/IV secretion system protein EEL44_16755 PF17456 Toxin-coregulated pilus protein S EEL44_16775 PF10671 Toxin co-regulated pilus biosynthesis protein Q EEL44_16785 PF07963 Prokaryotic N-terminal methylation motif EEL44_16785 PF05946 Toxin-coregulated pilus subunit TcpA EEL44_16795 PF00486 Transcriptional regulatory protein, C terminal EEL44_16800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_16805 PF08534 Redoxin EEL44_16820 PF12561 ToxR activated gene A lipoprotein domain EEL44_16820 PF00041 Fibronectin type III domain EEL44_16825 PF00171 Aldehyde dehydrogenase family EEL44_16900 PF11953 Domain of unknown function (DUF3470) EEL44_16900 PF00037 4Fe-4S binding domain EEL44_16905 PF00588 SpoU rRNA Methylase family EEL44_16905 PF08032 RNA 2'-O ribose methyltransferase substrate binding EEL44_16915 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase EEL44_16920 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase EEL44_16925 PF04223 Citrate lyase, alpha subunit (CitF) EEL44_16930 PF03328 HpcH/HpaI aldolase/citrate lyase family EEL44_16935 PF06857 Malonate decarboxylase delta subunit (MdcD) EEL44_16940 PF08218 Citrate lyase ligase C-terminal domain EEL44_16945 PF03390 2-hydroxycarboxylate transporter family EEL44_16950 PF04277 Oxaloacetate decarboxylase, gamma chain EEL44_16955 PF00682 HMGL-like EEL44_16955 PF02436 Conserved carboxylase domain EEL44_16955 PF00364 Biotin-requiring enzyme EEL44_16960 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit EEL44_16965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_16965 PF17203 Single cache domain 3 EEL44_16970 PF12431 Transcriptional regulator EEL44_16970 PF00072 Response regulator receiver domain EEL44_16985 PF03466 LysR substrate binding domain EEL44_16985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_16990 PF01266 FAD dependent oxidoreductase EEL44_16995 PF01235 Sodium:alanine symporter family EEL44_17000 PF00753 Metallo-beta-lactamase superfamily EEL44_17000 PF14863 Alkyl sulfatase dimerisation EEL44_17000 PF14864 Alkyl sulfatase C-terminal EEL44_17005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_17005 PF03466 LysR substrate binding domain EEL44_17010 PF01648 4'-phosphopantetheinyl transferase superfamily EEL44_17010 PF17837 4'-phosphopantetheinyl transferase N-terminal domain EEL44_17015 PF00005 ABC transporter EEL44_17020 PF01032 FecCD transport family EEL44_17025 PF01032 FecCD transport family EEL44_17030 PF01497 Periplasmic binding protein EEL44_17045 PF00425 chorismate binding enzyme EEL44_17050 PF00501 AMP-binding enzyme EEL44_17050 PF13193 AMP-binding enzyme C-terminal domain EEL44_17055 PF00550 Phosphopantetheine attachment site EEL44_17055 PF00857 Isochorismatase family EEL44_17060 PF01184 GPR1/FUN34/yaaH family EEL44_17065 PF00704 Glycosyl hydrolases family 18 EEL44_17065 PF06483 Chitinase C EEL44_17070 PF00117 Glutamine amidotransferase class-I EEL44_17070 PF02540 NAD synthase EEL44_17070 PF00958 GMP synthase C terminal domain EEL44_17075 PF00571 CBS domain EEL44_17075 PF00478 IMP dehydrogenase / GMP reductase domain EEL44_17080 PF02601 Exonuclease VII, large subunit EEL44_17080 PF13742 OB-fold nucleic acid binding domain EEL44_17095 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EEL44_17095 PF01926 50S ribosome-binding GTPase EEL44_17100 PF13360 PQQ-like domain EEL44_17105 PF09976 Tetratricopeptide repeat-like domain EEL44_17110 PF13393 Histidyl-tRNA synthetase EEL44_17110 PF03129 Anticodon binding domain EEL44_17115 PF04551 GcpE protein EEL44_17120 PF13464 Domain of unknown function (DUF4115) EEL44_17125 PF04055 Radical SAM superfamily EEL44_17130 PF00334 Nucleoside diphosphate kinase EEL44_17135 PF12404 Peptidase EEL44_17135 PF00883 Cytosol aminopeptidase family, catalytic domain EEL44_17140 PF04384 Iron-sulphur cluster assembly EEL44_17145 PF00111 2Fe-2S iron-sulfur cluster binding domain EEL44_17150 PF00012 Hsp70 protein EEL44_17155 PF00226 DnaJ domain EEL44_17155 PF07743 HSCB C-terminal oligomerisation domain EEL44_17160 PF01521 Iron-sulphur cluster biosynthesis EEL44_17165 PF01592 NifU-like N terminal domain EEL44_17170 PF00266 Aminotransferase class-V EEL44_17175 PF02082 Transcriptional regulator EEL44_17180 PF00588 SpoU rRNA Methylase family EEL44_17185 PF00459 Inositol monophosphatase family EEL44_17190 PF02355 Protein export membrane protein EEL44_17190 PF07549 SecD/SecF GG Motif EEL44_17195 PF02355 Protein export membrane protein EEL44_17195 PF13721 SecD export protein N-terminal TM region EEL44_17195 PF07549 SecD/SecF GG Motif EEL44_17200 PF02699 Preprotein translocase subunit EEL44_17205 PF01702 Queuine tRNA-ribosyltransferase EEL44_17215 PF02547 Queuosine biosynthesis protein EEL44_17220 PF00571 CBS domain EEL44_17225 PF00463 Isocitrate lyase family EEL44_17230 PF01274 Malate synthase EEL44_17235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_17235 PF03466 LysR substrate binding domain EEL44_17240 PF00578 AhpC/TSA family EEL44_17240 PF10417 C-terminal domain of 1-Cys peroxiredoxin EEL44_17245 PF03932 CutC family EEL44_17250 PF03976 Polyphosphate kinase 2 (PPK2) EEL44_17255 PF01895 PhoU domain EEL44_17260 PF00005 ABC transporter EEL44_17265 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_17270 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_17275 PF13089 Polyphosphate kinase N-terminal domain EEL44_17275 PF02503 Polyphosphate kinase middle domain EEL44_17275 PF13090 Polyphosphate kinase C-terminal domain 2 EEL44_17275 PF17941 Polyphosphate kinase C-terminal domain 1 EEL44_17280 PF02541 Ppx/GppA phosphatase family EEL44_17285 PF12849 PBP superfamily domain EEL44_17290 PF00512 His Kinase A (phospho-acceptor) domain EEL44_17290 PF11808 Phosphate regulon sensor protein PhoR EEL44_17290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_17290 PF00989 PAS fold EEL44_17295 PF00072 Response regulator receiver domain EEL44_17295 PF00486 Transcriptional regulatory protein, C terminal EEL44_17300 PF04381 Putative exonuclease, RdgC EEL44_17310 PF00037 4Fe-4S binding domain EEL44_17315 PF00881 Nitroreductase family EEL44_17350 PF00004 ATPase family associated with various cellular activities (AAA) EEL44_17350 PF07724 AAA domain (Cdc48 subfamily) EEL44_17350 PF17871 AAA lid domain EEL44_17350 PF02861 Clp amino terminal domain, pathogenicity island component EEL44_17350 PF10431 C-terminal, D2-small domain, of ClpB protein EEL44_17360 PF01479 S4 domain EEL44_17360 PF00849 RNA pseudouridylate synthase EEL44_17365 PF13525 Outer membrane lipoprotein EEL44_17370 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EEL44_17375 PF01817 Chorismate mutase type II EEL44_17375 PF00800 Prephenate dehydratase EEL44_17380 PF13416 Bacterial extracellular solute-binding protein EEL44_17385 PF00990 Diguanylate cyclase, GGDEF domain EEL44_17385 PF00563 EAL domain EEL44_17390 PF01931 Protein of unknown function DUF84 EEL44_17395 PF01371 Trp repressor protein EEL44_17400 PF01464 Transglycosylase SLT domain EEL44_17400 PF14718 Soluble lytic murein transglycosylase L domain EEL44_17405 PF12848 ABC transporter EEL44_17405 PF00005 ABC transporter EEL44_17410 PF07238 PilZ domain EEL44_17415 PF02153 Prephenate dehydrogenase EEL44_17415 PF01817 Chorismate mutase type II EEL44_17420 PF00793 DAHP synthetase I family EEL44_17425 PF07694 5TMR of 5TMR-LYT EEL44_17425 PF06580 Histidine kinase EEL44_17430 PF00072 Response regulator receiver domain EEL44_17430 PF04397 LytTr DNA-binding domain EEL44_17435 PF00933 Glycosyl hydrolase family 3 N terminal domain EEL44_17440 PF03702 Anhydro-N-acetylmuramic acid kinase EEL44_17445 PF13580 SIS domain EEL44_17460 PF02554 Carbon starvation protein CstA EEL44_17465 PF02401 LytB protein EEL44_17470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEL44_17475 PF01252 Signal peptidase (SPase) II EEL44_17480 PF06827 Zinc finger found in FPG and IleRS EEL44_17480 PF00133 tRNA synthetases class I (I, L, M and V) EEL44_17480 PF08264 Anticodon-binding domain of tRNA EEL44_17485 PF01687 Riboflavin kinase EEL44_17485 PF06574 FAD synthetase EEL44_17490 PF03023 Lipid II flippase MurJ EEL44_17495 PF01649 Ribosomal protein S20 EEL44_17500 PF01022 Bacterial regulatory protein, arsR family EEL44_17505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_17505 PF03466 LysR substrate binding domain EEL44_17510 PF02690 Na+/Pi-cotransporter EEL44_17515 PF00303 Thymidylate synthase EEL44_17520 PF01790 Prolipoprotein diacylglyceryl transferase EEL44_17525 PF01925 Sulfite exporter TauE/SafE EEL44_17530 PF01590 GAF domain EEL44_17530 PF05524 PEP-utilising enzyme, N-terminal EEL44_17530 PF00391 PEP-utilising enzyme, mobile domain EEL44_17530 PF02896 PEP-utilising enzyme, TIM barrel domain EEL44_17535 PF00293 NUDIX domain EEL44_17540 PF02976 DNA mismatch repair enzyme MutH EEL44_17545 PF00248 Aldo/keto reductase family EEL44_17555 PF02954 Bacterial regulatory protein, Fis family EEL44_17555 PF00072 Response regulator receiver domain EEL44_17555 PF00158 Sigma-54 interaction domain EEL44_17560 PF01336 OB-fold nucleic acid binding domain EEL44_17560 PF00152 tRNA synthetases class II (D, K and N) EEL44_17570 PF05525 Branched-chain amino acid transport protein EEL44_17575 PF05175 Methyltransferase small domain EEL44_17580 PF00270 DEAD/DEAH box helicase EEL44_17580 PF00271 Helicase conserved C-terminal domain EEL44_17585 PF03144 Elongation factor Tu domain 2 EEL44_17585 PF16658 Class II release factor RF3, C-terminal domain EEL44_17585 PF00009 Elongation factor Tu GTP binding domain EEL44_17590 PF00717 Peptidase S24-like EEL44_17590 PF01381 Helix-turn-helix EEL44_17635 PF06122 Conjugative relaxosome accessory transposon protein EEL44_17645 PF00589 Phage integrase family EEL44_17645 PF13495 Phage integrase, N-terminal SAM-like domain EEL44_17650 PF00186 Dihydrofolate reductase EEL44_17670 PF12833 Helix-turn-helix domain EEL44_17695 PF04002 RadC-like JAB domain EEL44_17700 PF00092 von Willebrand factor type A domain EEL44_17720 PF07728 AAA domain (dynein-related subfamily) EEL44_17735 PF00436 Single-strand binding protein family EEL44_17750 PF04231 Endonuclease I EEL44_17760 PF00665 Integrase core domain EEL44_17765 PF01695 IstB-like ATP binding protein EEL44_17775 PF06986 Type-1V conjugative transfer system mating pair stabilisation EEL44_17780 PF06834 TraU protein EEL44_17790 PF10502 Signal peptidase, peptidase S26 EEL44_17805 PF13098 Thioredoxin-like domain EEL44_17805 PF10411 Disulfide bond isomerase protein N-terminus EEL44_17930 PF00929 Exonuclease EEL44_17930 PF02811 PHP domain EEL44_17930 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EEL44_17930 PF07733 Bacterial DNA polymerase III alpha NTPase domain EEL44_17930 PF11490 DNA polymerase III polC-type N-terminus II EEL44_17930 PF14579 Helix-hairpin-helix motif EEL44_17940 PF00717 Peptidase S24-like EEL44_17945 PF13438 Domain of unknown function (DUF4113) EEL44_17945 PF00817 impB/mucB/samB family EEL44_17945 PF11799 impB/mucB/samB family C-terminal domain EEL44_17955 PF00872 Transposase, Mutator family EEL44_17970 PF00809 Pterin binding enzyme EEL44_17975 PF01636 Phosphotransferase enzyme family EEL44_17980 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase EEL44_17990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_17990 PF03466 LysR substrate binding domain EEL44_17995 PF07690 Major Facilitator Superfamily EEL44_18060 PF00009 Elongation factor Tu GTP binding domain EEL44_18060 PF16658 Class II release factor RF3, C-terminal domain EEL44_18060 PF03144 Elongation factor Tu domain 2 EEL44_18065 PF00990 Diguanylate cyclase, GGDEF domain EEL44_18065 PF00563 EAL domain EEL44_18065 PF03707 Bacterial signalling protein N terminal repeat EEL44_18080 PF13508 Acetyltransferase (GNAT) domain EEL44_18090 PF03707 Bacterial signalling protein N terminal repeat EEL44_18090 PF00990 Diguanylate cyclase, GGDEF domain EEL44_18090 PF00563 EAL domain EEL44_18115 PF07719 Tetratricopeptide repeat EEL44_18115 PF13181 Tetratricopeptide repeat EEL44_18120 PF01138 3' exoribonuclease family, domain 1 EEL44_18120 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EEL44_18120 PF03725 3' exoribonuclease family, domain 2 EEL44_18120 PF00575 S1 RNA binding domain EEL44_18120 PF00013 KH domain EEL44_18125 PF00312 Ribosomal protein S15 EEL44_18130 PF16198 tRNA pseudouridylate synthase B C-terminal domain EEL44_18130 PF01509 TruB family pseudouridylate synthase (N terminal domain) EEL44_18130 PF09157 Pseudouridine synthase II TruB, C-terminal EEL44_18135 PF02033 Ribosome-binding factor A EEL44_18140 PF11987 Translation-initiation factor 2 EEL44_18140 PF04760 Translation initiation factor IF-2, N-terminal region EEL44_18140 PF08364 Bacterial translation initiation factor IF-2 associated region EEL44_18140 PF00009 Elongation factor Tu GTP binding domain EEL44_18145 PF00575 S1 RNA binding domain EEL44_18145 PF13184 NusA-like KH domain EEL44_18145 PF08529 NusA N-terminal domain EEL44_18150 PF02576 RimP N-terminal domain EEL44_18150 PF17384 RimP C-terminal SH3 domain EEL44_18165 PF03840 Preprotein translocase SecG subunit EEL44_18175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEL44_18175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEL44_18175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEL44_18175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEL44_18180 PF00809 Pterin binding enzyme EEL44_18185 PF00004 ATPase family associated with various cellular activities (AAA) EEL44_18185 PF01434 Peptidase family M41 EEL44_18185 PF06480 FtsH Extracellular EEL44_18185 PF17862 AAA+ lid domain EEL44_18190 PF01728 FtsJ-like methyltransferase EEL44_18195 PF01985 CRS1 / YhbY (CRM) domain EEL44_18200 PF03449 Transcription elongation factor, N-terminal EEL44_18200 PF01272 Transcription elongation factor, GreA/GreB, C-term EEL44_18205 PF13609 Gram-negative porin EEL44_18210 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family EEL44_18215 PF01479 S4 domain EEL44_18215 PF00579 tRNA synthetases class I (W and Y) EEL44_18220 PF04225 Opacity-associated protein A LysM-like domain EEL44_18220 PF01551 Peptidase family M23 EEL44_18225 PF00873 AcrB/AcrD/AcrF family EEL44_18235 PF01521 Iron-sulphur cluster biosynthesis EEL44_18240 PF00202 Aminotransferase class-III EEL44_18245 PF01594 AI-2E family transporter EEL44_18250 PF05175 Methyltransferase small domain EEL44_18250 PF08468 Methyltransferase small domain N-terminal EEL44_18255 PF00072 Response regulator receiver domain EEL44_18255 PF09308 LuxQ, periplasmic EEL44_18255 PF00512 His Kinase A (phospho-acceptor) domain EEL44_18255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_18265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEL44_18270 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_18275 PF12911 N-terminal TM domain of oligopeptide transport permease C EEL44_18275 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_18280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_18280 PF00005 ABC transporter EEL44_18285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_18285 PF00005 ABC transporter EEL44_18295 PF01869 BadF/BadG/BcrA/BcrD ATPase family EEL44_18300 PF02838 Glycosyl hydrolase family 20, domain 2 EEL44_18300 PF00728 Glycosyl hydrolase family 20, catalytic domain EEL44_18305 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain EEL44_18305 PF06165 Glycosyltransferase family 36 EEL44_18310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEL44_18310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEL44_18310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEL44_18310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEL44_18315 PF08402 TOBE domain EEL44_18315 PF00005 ABC transporter EEL44_18325 PF13416 Bacterial extracellular solute-binding protein EEL44_18330 PF00909 Ammonium Transporter Family EEL44_18335 PF00543 Nitrogen regulatory protein P-II EEL44_18340 PF06062 Uncharacterised protein family (UPF0231) EEL44_18345 PF11791 Aconitate B N-terminal domain EEL44_18345 PF06434 Aconitate hydratase 2 N-terminus EEL44_18345 PF00330 Aconitase family (aconitate hydratase) EEL44_18350 PF01734 Patatin-like phospholipase EEL44_18355 PF14814 Bifunctional transglycosylase second domain EEL44_18355 PF00912 Transglycosylase EEL44_18355 PF00905 Penicillin binding protein transpeptidase domain EEL44_18360 PF00270 DEAD/DEAH box helicase EEL44_18360 PF04408 Helicase associated domain (HA2) EEL44_18360 PF00271 Helicase conserved C-terminal domain EEL44_18360 PF08482 ATP-dependent helicase C-terminal EEL44_18370 PF03749 Sugar fermentation stimulation protein RE domain EEL44_18370 PF17746 SfsA N-terminal OB domain EEL44_18375 PF01258 Prokaryotic dksA/traR C4-type zinc finger EEL44_18380 PF00749 tRNA synthetases class I (E and Q), catalytic domain EEL44_18385 PF01743 Poly A polymerase head domain EEL44_18385 PF12627 Probable RNA and SrmB- binding site of polymerase A EEL44_18385 PF12626 Polymerase A arginine-rich C-terminus EEL44_18390 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EEL44_18395 PF02548 Ketopantoate hydroxymethyltransferase EEL44_18400 PF02569 Pantoate-beta-alanine ligase EEL44_18405 PF01061 ABC-2 type transporter EEL44_18410 PF00005 ABC transporter EEL44_18415 PF00916 Sulfate permease family EEL44_18415 PF01740 STAS domain EEL44_18420 PF00484 Carbonic anhydrase EEL44_18425 PF00156 Phosphoribosyl transferase domain EEL44_18430 PF00440 Bacterial regulatory proteins, tetR family EEL44_18440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EEL44_18445 PF04348 LppC putative lipoprotein EEL44_18450 PF02021 Uncharacterised protein family UPF0102 EEL44_18455 PF13580 SIS domain EEL44_18460 PF04972 BON domain EEL44_18465 PF04386 Stringent starvation protein B EEL44_18470 PF00043 Glutathione S-transferase, C-terminal domain EEL44_18470 PF02798 Glutathione S-transferase, N-terminal domain EEL44_18475 PF02167 Cytochrome C1 family EEL44_18480 PF00032 Cytochrome b(C-terminal)/b6/petD EEL44_18480 PF00033 Cytochrome b/b6/petB EEL44_18485 PF00355 Rieske [2Fe-2S] domain EEL44_18485 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EEL44_18490 PF00380 Ribosomal protein S9/S16 EEL44_18495 PF00572 Ribosomal protein L13 EEL44_18500 PF03969 AFG1-like ATPase EEL44_18510 PF00595 PDZ domain EEL44_18515 PF13180 PDZ domain EEL44_18520 PF01245 Ribosomal protein L19 EEL44_18525 PF01746 tRNA (Guanine-1)-methyltransferase EEL44_18530 PF01782 RimM N-terminal domain EEL44_18530 PF05239 PRC-barrel domain EEL44_18535 PF00886 Ribosomal protein S16 EEL44_18540 PF02881 SRP54-type protein, helical bundle domain EEL44_18540 PF02978 Signal peptide binding domain EEL44_18540 PF00448 SRP54-type protein, GTPase domain EEL44_18545 PF01578 Cytochrome C assembly protein EEL44_18550 PF01595 Cyclin M transmembrane N-terminal domain EEL44_18550 PF03471 Transporter associated domain EEL44_18550 PF00571 CBS domain EEL44_18555 PF02664 S-Ribosylhomocysteinase (LuxS) EEL44_18560 PF04262 Glutamate-cysteine ligase EEL44_18565 PF05193 Peptidase M16 inactive domain EEL44_18565 PF00675 Insulinase (Peptidase family M16) EEL44_18570 PF09335 SNARE associated Golgi protein EEL44_18580 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit EEL44_18585 PF00682 HMGL-like EEL44_18585 PF00364 Biotin-requiring enzyme EEL44_18585 PF02436 Conserved carboxylase domain EEL44_18590 PF04277 Oxaloacetate decarboxylase, gamma chain EEL44_18640 PF02599 Global regulator protein family EEL44_18645 PF13840 ACT domain EEL44_18645 PF00696 Amino acid kinase family EEL44_18645 PF01842 ACT domain EEL44_18650 PF01411 tRNA synthetases class II (A) EEL44_18650 PF02272 DHHA1 domain EEL44_18650 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EEL44_18655 PF02631 RecX family EEL44_18660 PF00154 recA bacterial DNA recombination protein EEL44_18665 PF02464 Competence-damaged protein EEL44_18670 PF12857 TOBE-like domain EEL44_18670 PF00005 ABC transporter EEL44_18675 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_18680 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_18690 PF00291 Pyridoxal-phosphate dependent enzyme EEL44_18695 PF00488 MutS domain V EEL44_18695 PF05190 MutS family domain IV EEL44_18695 PF05192 MutS domain III EEL44_18695 PF05188 MutS domain II EEL44_18695 PF01624 MutS domain I EEL44_18700 PF04545 Sigma-70, region 4 EEL44_18700 PF00140 Sigma-70 factor, region 1.2 EEL44_18700 PF04542 Sigma-70 region 2 EEL44_18700 PF04539 Sigma-70 region 3 EEL44_18705 PF01551 Peptidase family M23 EEL44_18705 PF01476 LysM domain EEL44_18715 PF01975 Survival protein SurE EEL44_18720 PF01142 tRNA pseudouridine synthase D (TruD) EEL44_18725 PF02542 YgbB family EEL44_18730 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EEL44_18735 PF04977 Septum formation initiator EEL44_18740 PF02673 Bacitracin resistance protein BacA EEL44_18745 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EEL44_18750 PF02152 Dihydroneopterin aldolase EEL44_18760 PF02660 Glycerol-3-phosphate acyltransferase EEL44_18765 PF00561 alpha/beta hydrolase fold EEL44_18770 PF00814 Glycoprotease family EEL44_18775 PF01165 Ribosomal protein S21 EEL44_18780 PF09424 Yqey-like protein EEL44_18785 PF08278 DNA primase DnaG DnaB-binding EEL44_18785 PF10410 DnaB-helicase binding domain of primase EEL44_18785 PF08275 DNA primase catalytic core, N-terminal domain EEL44_18785 PF01807 CHC2 zinc finger EEL44_18790 PF04545 Sigma-70, region 4 EEL44_18790 PF04539 Sigma-70 region 3 EEL44_18790 PF04542 Sigma-70 region 2 EEL44_18790 PF00140 Sigma-70 factor, region 1.2 EEL44_18790 PF03979 Sigma-70 factor, region 1.1 EEL44_18790 PF04546 Sigma-70, non-essential region EEL44_18800 PF00589 Phage integrase family EEL44_18800 PF13356 Arm DNA-binding domain EEL44_18805 PF00563 EAL domain EEL44_18805 PF08668 HDOD domain EEL44_18810 PF00672 HAMP domain EEL44_18810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_18810 PF17200 Single Cache domain 2 EEL44_18815 PF12833 Helix-turn-helix domain EEL44_18820 PF08447 PAS fold EEL44_18820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_18830 PF04002 RadC-like JAB domain EEL44_18865 PF01551 Peptidase family M23 EEL44_18865 PF08525 Opacity-associated protein A N-terminal motif EEL44_18865 PF01476 LysM domain EEL44_18875 PF00114 Pilin (bacterial filament) EEL44_18875 PF07963 Prokaryotic N-terminal methylation motif EEL44_18890 PF00075 RNase H EEL44_18945 PF03480 Bacterial extracellular solute-binding protein, family 7 EEL44_18950 PF01380 SIS domain EEL44_18955 PF00455 DeoR C terminal sensor domain EEL44_18955 PF08220 DeoR-like helix-turn-helix domain EEL44_18960 PF02887 Pyruvate kinase, alpha/beta domain EEL44_18960 PF00224 Pyruvate kinase, barrel domain EEL44_18965 PF04402 Protein of unknown function (DUF541) EEL44_18970 PF03466 LysR substrate binding domain EEL44_18970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_18975 PF01810 LysE type translocator EEL44_18980 PF00924 Mechanosensitive ion channel EEL44_18980 PF05552 Conserved TM helix EEL44_18990 PF01116 Fructose-bisphosphate aldolase class-II EEL44_18995 PF00162 Phosphoglycerate kinase EEL44_19000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EEL44_19000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EEL44_19005 PF07715 TonB-dependent Receptor Plug Domain EEL44_19005 PF00593 TonB dependent receptor EEL44_19010 PF03466 LysR substrate binding domain EEL44_19010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_19015 PF02780 Transketolase, C-terminal domain EEL44_19015 PF00456 Transketolase, thiamine diphosphate binding domain EEL44_19015 PF02779 Transketolase, pyrimidine binding domain EEL44_19020 PF02772 S-adenosylmethionine synthetase, central domain EEL44_19020 PF00438 S-adenosylmethionine synthetase, N-terminal domain EEL44_19020 PF02773 S-adenosylmethionine synthetase, C-terminal domain EEL44_19025 PF17283 SprT-like zinc ribbon domain EEL44_19025 PF10263 SprT-like family EEL44_19030 PF04231 Endonuclease I EEL44_19035 PF04452 RNA methyltransferase EEL44_19040 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EEL44_19040 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EEL44_19045 PF02622 Uncharacterized ACR, COG1678 EEL44_19050 PF03652 Holliday junction resolvase EEL44_19055 PF00579 tRNA synthetases class I (W and Y) EEL44_19055 PF01479 S4 domain EEL44_19065 PF00437 Type II/IV secretion system protein EEL44_19070 PF00437 Type II/IV secretion system protein EEL44_19075 PF01168 Alanine racemase, N-terminal domain EEL44_19080 PF03807 NADP oxidoreductase coenzyme F420-dependent EEL44_19080 PF14748 Pyrroline-5-carboxylate reductase dimerisation EEL44_19085 PF02325 YGGT family EEL44_19090 PF02594 Uncharacterised ACR, YggU family COG1872 EEL44_19100 PF01725 Ham1 family EEL44_19105 PF04055 Radical SAM superfamily EEL44_19105 PF06969 HemN C-terminal domain EEL44_19110 PF04960 Glutaminase EEL44_19115 PF02390 Putative methyltransferase EEL44_19120 PF00633 Helix-hairpin-helix motif EEL44_19120 PF10576 Iron-sulfur binding domain of endonuclease III EEL44_19120 PF14815 NUDIX domain EEL44_19120 PF00730 HhH-GPD superfamily base excision DNA repair protein EEL44_19125 PF04362 Bacterial Fe(2+) trafficking EEL44_19130 PF01464 Transglycosylase SLT domain EEL44_19130 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain EEL44_19155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_19155 PF00672 HAMP domain EEL44_19155 PF12729 Four helix bundle sensory module for signal transduction EEL44_19190 PF05099 Tellurite resistance protein TerB EEL44_19190 PF00226 DnaJ domain EEL44_19195 PF04453 LPS transport system D EEL44_19195 PF03968 OstA-like protein EEL44_19200 PF09312 SurA N-terminal domain EEL44_19205 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EEL44_19210 PF00398 Ribosomal RNA adenine dimethylase EEL44_19215 PF04379 ApaG domain EEL44_19220 PF00149 Calcineurin-like phosphoesterase EEL44_19225 PF00186 Dihydrofolate reductase EEL44_19230 PF12821 Threonine/Serine exporter, ThrE EEL44_19235 PF06738 Putative threonine/serine exporter EEL44_19240 PF01926 50S ribosome-binding GTPase EEL44_19240 PF01018 GTP1/OBG EEL44_19245 PF01016 Ribosomal L27 protein EEL44_19250 PF00829 Ribosomal prokaryotic L21 protein EEL44_19255 PF00348 Polyprenyl synthetase EEL44_19265 PF00056 lactate/malate dehydrogenase, NAD binding domain EEL44_19265 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EEL44_19270 PF01316 Arginine repressor, DNA binding domain EEL44_19270 PF02863 Arginine repressor, C-terminal domain EEL44_19280 PF16868 NMT1-like family EEL44_19290 PF00582 Universal stress protein family EEL44_19305 PF06877 Regulator of ribonuclease activity B EEL44_19315 PF01523 Putative modulator of DNA gyrase EEL44_19320 PF00795 Carbon-nitrogen hydrolase EEL44_19325 PF13502 AsmA-like C-terminal region EEL44_19325 PF13116 Protein of unknown function EEL44_19330 PF00575 S1 RNA binding domain EEL44_19330 PF10150 Ribonuclease E/G family EEL44_19335 PF02545 Maf-like protein EEL44_19340 PF04093 rod shape-determining protein MreD EEL44_19345 PF04085 rod shape-determining protein MreC EEL44_19380 PF00114 Pilin (bacterial filament) EEL44_19380 PF07963 Prokaryotic N-terminal methylation motif EEL44_19385 PF07963 Prokaryotic N-terminal methylation motif EEL44_19385 PF00114 Pilin (bacterial filament) EEL44_19395 PF00482 Type II secretion system (T2SS), protein F EEL44_19400 PF00437 Type II/IV secretion system protein EEL44_19410 PF01471 Putative peptidoglycan binding domain EEL44_19410 PF13401 AAA domain EEL44_19415 PF07660 Secretin and TonB N terminus short domain EEL44_19415 PF03958 Bacterial type II/III secretion system short domain EEL44_19415 PF00263 Bacterial type II and III secretion system protein EEL44_19415 PF11741 AMIN domain EEL44_19435 PF00990 Diguanylate cyclase, GGDEF domain EEL44_19435 PF00563 EAL domain EEL44_19435 PF17157 Gammaproteobacterial periplasmic sensor domain EEL44_19440 PF00436 Single-strand binding protein family EEL44_19445 PF00196 Bacterial regulatory proteins, luxR family EEL44_19450 PF00483 Nucleotidyl transferase EEL44_19455 PF00005 ABC transporter EEL44_19455 PF17755 UvrA DNA-binding domain EEL44_19455 PF17760 UvrA interaction domain EEL44_19465 PF00266 Aminotransferase class-V EEL44_19470 PF00696 Amino acid kinase family EEL44_19470 PF01842 ACT domain EEL44_19475 PF02310 B12 binding domain EEL44_19475 PF02607 B12 binding domain EEL44_19475 PF02965 Vitamin B12 dependent methionine synthase, activation domain EEL44_19475 PF00809 Pterin binding enzyme EEL44_19475 PF02574 Homocysteine S-methyltransferase EEL44_19480 PF00999 Sodium/hydrogen exchanger family EEL44_19545 PF01507 Phosphoadenosine phosphosulfate reductase family EEL44_19550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EEL44_19550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EEL44_19555 PF00175 Oxidoreductase NAD-binding domain EEL44_19555 PF00667 FAD binding domain EEL44_19555 PF00258 Flavodoxin EEL44_19575 PF09583 Phage shock protein G (Phageshock_PspG) EEL44_19580 PF01207 Dihydrouridine synthase (Dus) EEL44_19585 PF01475 Ferric uptake regulator family EEL44_19595 PF12706 Beta-lactamase superfamily domain EEL44_19600 PF00342 Phosphoglucose isomerase EEL44_19605 PF01894 Uncharacterised protein family UPF0047 EEL44_19610 PF00842 Alanine racemase, C-terminal domain EEL44_19610 PF01168 Alanine racemase, N-terminal domain EEL44_19615 PF03796 DnaB-like helicase C terminal domain EEL44_19615 PF00772 DnaB-like helicase N terminal domain EEL44_19625 PF01281 Ribosomal protein L9, N-terminal domain EEL44_19625 PF03948 Ribosomal protein L9, C-terminal domain EEL44_19630 PF01084 Ribosomal protein S18 EEL44_19635 PF00436 Single-strand binding protein family EEL44_19640 PF01250 Ribosomal protein S6 EEL44_19645 PF00210 Ferritin-like domain EEL44_19650 PF04324 BFD-like [2Fe-2S] binding domain EEL44_19655 PF03144 Elongation factor Tu domain 2 EEL44_19655 PF03143 Elongation factor Tu C-terminal domain EEL44_19655 PF00009 Elongation factor Tu GTP binding domain EEL44_19660 PF00009 Elongation factor Tu GTP binding domain EEL44_19660 PF03764 Elongation factor G, domain IV EEL44_19660 PF14492 Elongation Factor G, domain II EEL44_19660 PF00679 Elongation factor G C-terminus EEL44_19660 PF03144 Elongation factor Tu domain 2 EEL44_19665 PF00177 Ribosomal protein S7p/S5e EEL44_19670 PF00164 Ribosomal protein S12/S23 EEL44_19680 PF02635 DsrE/DsrF-like family EEL44_19685 PF02635 DsrE/DsrF-like family EEL44_19690 PF13309 HTH domain EEL44_19690 PF08348 YheO-like PAS domain EEL44_19695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EEL44_19695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase EEL44_19705 PF04102 SlyX EEL44_19710 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) EEL44_19715 PF01145 SPFH domain / Band 7 family EEL44_19720 PF01145 SPFH domain / Band 7 family EEL44_19720 PF12221 Bacterial membrane protein N terminal EEL44_19725 PF16360 GTP-binding GTPase Middle Region EEL44_19725 PF01926 50S ribosome-binding GTPase EEL44_19725 PF13167 GTP-binding GTPase N-terminal EEL44_19730 PF17209 Hfq protein EEL44_19740 PF01119 DNA mismatch repair protein, C-terminal domain EEL44_19740 PF08676 MutL C terminal dimerisation domain EEL44_19745 PF01520 N-acetylmuramoyl-L-alanine amidase EEL44_19750 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EEL44_19755 PF08331 Domain of unknown function (DUF1730) EEL44_19800 PF00929 Exonuclease EEL44_19805 PF03193 RsgA GTPase EEL44_19810 PF02666 Phosphatidylserine decarboxylase EEL44_19815 PF03600 Citrate transporter EEL44_19815 PF02080 TrkA-C domain EEL44_19825 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EEL44_19825 PF01676 Metalloenzyme superfamily EEL44_19830 PF01551 Peptidase family M23 EEL44_19840 PF08360 QacR-like protein, C-terminal region EEL44_19840 PF00440 Bacterial regulatory proteins, tetR family EEL44_19845 PF01208 Uroporphyrinogen decarboxylase (URO-D) EEL44_19850 PF00293 NUDIX domain EEL44_19850 PF09297 NADH pyrophosphatase zinc ribbon domain EEL44_19855 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ EEL44_19860 PF05000 RNA polymerase Rpb1, domain 4 EEL44_19860 PF04998 RNA polymerase Rpb1, domain 5 EEL44_19860 PF04997 RNA polymerase Rpb1, domain 1 EEL44_19860 PF00623 RNA polymerase Rpb1, domain 2 EEL44_19860 PF04983 RNA polymerase Rpb1, domain 3 EEL44_19865 PF04560 RNA polymerase Rpb2, domain 7 EEL44_19865 PF00562 RNA polymerase Rpb2, domain 6 EEL44_19865 PF10385 RNA polymerase beta subunit external 1 domain EEL44_19865 PF04565 RNA polymerase Rpb2, domain 3 EEL44_19865 PF04563 RNA polymerase beta subunit EEL44_19865 PF04561 RNA polymerase Rpb2, domain 2 EEL44_19870 PF16320 Ribosomal protein L7/L12 dimerisation domain EEL44_19870 PF00542 Ribosomal protein L7/L12 C-terminal domain EEL44_19875 PF00466 Ribosomal protein L10 EEL44_19880 PF00687 Ribosomal protein L1p/L10e family EEL44_19885 PF03946 Ribosomal protein L11, N-terminal domain EEL44_19885 PF00298 Ribosomal protein L11, RNA binding domain EEL44_19890 PF00467 KOW motif EEL44_19890 PF02357 Transcription termination factor nusG EEL44_19895 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EEL44_19900 PF03144 Elongation factor Tu domain 2 EEL44_19900 PF00009 Elongation factor Tu GTP binding domain EEL44_19900 PF03143 Elongation factor Tu C-terminal domain EEL44_19925 PF00485 Phosphoribulokinase / Uridine kinase family EEL44_19930 PF02237 Biotin protein ligase C terminal domain EEL44_19930 PF03099 Biotin/lipoate A/B protein ligase family EEL44_19930 PF08279 HTH domain EEL44_19935 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EEL44_19935 PF01565 FAD binding domain EEL44_19945 PF13091 PLD-like domain EEL44_19980 PF00175 Oxidoreductase NAD-binding domain EEL44_19985 PF00175 Oxidoreductase NAD-binding domain EEL44_19985 PF00970 Oxidoreductase FAD-binding domain EEL44_19985 PF00111 2Fe-2S iron-sulfur cluster binding domain EEL44_19990 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EEL44_20000 PF07498 Rho termination factor, N-terminal domain EEL44_20000 PF07497 Rho termination factor, RNA-binding domain EEL44_20000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEL44_20005 PF00085 Thioredoxin EEL44_20010 PF00271 Helicase conserved C-terminal domain EEL44_20010 PF00270 DEAD/DEAH box helicase EEL44_20015 PF02541 Ppx/GppA phosphatase family EEL44_20020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EEL44_20020 PF09456 RcsC Alpha-Beta-Loop (ABL) EEL44_20020 PF00512 His Kinase A (phospho-acceptor) domain EEL44_20020 PF00072 Response regulator receiver domain EEL44_20025 PF12832 MFS_1 like family EEL44_20045 PF13193 AMP-binding enzyme C-terminal domain EEL44_20045 PF16177 Acetyl-coenzyme A synthetase N-terminus EEL44_20045 PF00501 AMP-binding enzyme EEL44_20050 PF01220 Dehydroquinase class II EEL44_20055 PF00364 Biotin-requiring enzyme EEL44_20060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EEL44_20060 PF00289 Biotin carboxylase, N-terminal domain EEL44_20060 PF02785 Biotin carboxylase C-terminal domain EEL44_20070 PF01207 Dihydrouridine synthase (Dus) EEL44_20075 PF02954 Bacterial regulatory protein, Fis family EEL44_20080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EEL44_20080 PF00356 Bacterial regulatory proteins, lacI family EEL44_20085 PF00920 Dehydratase family EEL44_20090 PF01202 Shikimate kinase EEL44_20095 PF02447 GntP family permease EEL44_20100 PF01081 KDPG and KHG aldolase EEL44_20105 PF00593 TonB dependent receptor EEL44_20105 PF07715 TonB-dependent Receptor Plug Domain EEL44_20120 PF00672 HAMP domain EEL44_20120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_20120 PF17200 Single Cache domain 2 EEL44_20125 PF01276 Orn/Lys/Arg decarboxylase, major domain EEL44_20125 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain EEL44_20125 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain EEL44_20130 PF13520 Amino acid permease EEL44_20135 PF00486 Transcriptional regulatory protein, C terminal EEL44_20135 PF18500 CadC C-terminal domain 1 EEL44_20140 PF13411 MerR HTH family regulatory protein EEL44_20150 PF01808 AICARFT/IMPCHase bienzyme EEL44_20150 PF02142 MGS-like domain EEL44_20155 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EEL44_20155 PF02843 Phosphoribosylglycinamide synthetase, C domain EEL44_20155 PF02844 Phosphoribosylglycinamide synthetase, N domain EEL44_20165 PF00216 Bacterial DNA-binding protein EEL44_20170 PF01595 Cyclin M transmembrane N-terminal domain EEL44_20170 PF00571 CBS domain EEL44_20175 PF00480 ROK family EEL44_20180 PF01238 Phosphomannose isomerase type I EEL44_20185 PF04222 Protein of unknown function (DUF416) EEL44_20190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EEL44_20195 PF03167 Uracil DNA glycosylase superfamily EEL44_20200 PF00924 Mechanosensitive ion channel EEL44_20205 PF10996 Beta-Casp domain EEL44_20205 PF00753 Metallo-beta-lactamase superfamily EEL44_20205 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EEL44_20210 PF02397 Bacterial sugar transferase EEL44_20215 PF01370 NAD dependent epimerase/dehydratase family EEL44_20220 PF02719 Polysaccharide biosynthesis protein EEL44_20250 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_20260 PF00171 Aldehyde dehydrogenase family EEL44_20260 PF00465 Iron-containing alcohol dehydrogenase EEL44_20265 PF13193 AMP-binding enzyme C-terminal domain EEL44_20265 PF00501 AMP-binding enzyme EEL44_20275 PF00005 ABC transporter EEL44_20275 PF14524 Wzt C-terminal domain EEL44_20290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family EEL44_20295 PF16363 GDP-mannose 4,6 dehydratase EEL44_20300 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EEL44_20300 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EEL44_20300 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EEL44_20300 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EEL44_20305 PF01050 Mannose-6-phosphate isomerase EEL44_20305 PF00483 Nucleotidyl transferase EEL44_20310 PF01370 NAD dependent epimerase/dehydratase family EEL44_20315 PF00457 Glycosyl hydrolases family 11 EEL44_20315 PF01522 Polysaccharide deacetylase EEL44_20330 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EEL44_20340 PF04488 Glycosyltransferase sugar-binding region containing DXD motif EEL44_20345 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) EEL44_20380 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EEL44_20385 PF00535 Glycosyl transferase family 2 EEL44_20390 PF01075 Glycosyltransferase family 9 (heptosyltransferase) EEL44_20395 PF01467 Cytidylyltransferase-like EEL44_20400 PF06827 Zinc finger found in FPG and IleRS EEL44_20400 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EEL44_20400 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EEL44_20410 PF00471 Ribosomal protein L33 EEL44_20415 PF00830 Ribosomal L28 family EEL44_20420 PF04002 RadC-like JAB domain EEL44_20425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EEL44_20425 PF00672 HAMP domain EEL44_20430 PF04127 DNA / pantothenate metabolism flavoprotein EEL44_20430 PF02441 Flavoprotein EEL44_20440 PF00440 Bacterial regulatory proteins, tetR family EEL44_20445 PF03279 Bacterial lipid A biosynthesis acyltransferase EEL44_20450 PF03279 Bacterial lipid A biosynthesis acyltransferase EEL44_20455 PF00156 Phosphoribosyl transferase domain EEL44_20460 PF03725 3' exoribonuclease family, domain 2 EEL44_20460 PF01138 3' exoribonuclease family, domain 1 EEL44_20465 PF03755 YicC-like family, N-terminal region EEL44_20465 PF08340 Domain of unknown function (DUF1732) EEL44_20470 PF03350 Uncharacterized protein family, UPF0114 EEL44_20475 PF02378 Phosphotransferase system, EIIC EEL44_20475 PF00367 phosphotransferase system, EIIB EEL44_20480 PF13580 SIS domain EEL44_20490 PF01380 SIS domain EEL44_20490 PF01418 Helix-turn-helix domain, rpiR family EEL44_20495 PF01032 FecCD transport family EEL44_20500 PF01497 Periplasmic binding protein EEL44_20505 PF00005 ABC transporter EEL44_20510 PF00593 TonB dependent receptor EEL44_20510 PF07715 TonB-dependent Receptor Plug Domain EEL44_20515 PF00664 ABC transporter transmembrane region EEL44_20515 PF00005 ABC transporter EEL44_20530 PF00270 DEAD/DEAH box helicase EEL44_20530 PF00271 Helicase conserved C-terminal domain EEL44_20530 PF00570 HRDC domain EEL44_20530 PF16124 RecQ zinc-binding EEL44_20530 PF09382 RQC domain EEL44_20535 PF00892 EamA-like transporter family EEL44_20545 PF12833 Helix-turn-helix domain EEL44_20550 PF01810 LysE type translocator EEL44_20565 PF13361 UvrD-like helicase C-terminal domain EEL44_20565 PF00580 UvrD/REP helicase N-terminal domain EEL44_20570 PF01432 Peptidase family M3 EEL44_20575 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EEL44_20580 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EEL44_20580 PF07992 Pyridine nucleotide-disulphide oxidoreductase EEL44_20645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EEL44_20655 PF12911 N-terminal TM domain of oligopeptide transport permease C EEL44_20655 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_20665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EEL44_20670 PF00005 ABC transporter EEL44_20670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EEL44_20710 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EEL44_20715 PF13361 UvrD-like helicase C-terminal domain EEL44_20715 PF00580 UvrD/REP helicase N-terminal domain EEL44_20720 PF00440 Bacterial regulatory proteins, tetR family EEL44_20725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EEL44_20730 PF00873 AcrB/AcrD/AcrF family EEL44_20735 PF04380 Membrane fusogenic activity EEL44_20740 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EEL44_20740 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EEL44_20745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_20745 PF03466 LysR substrate binding domain EEL44_20790 PF12724 Flavodoxin domain EEL44_20795 PF02386 Cation transport protein EEL44_20800 PF09186 Domain of unknown function (DUF1949) EEL44_20800 PF01205 Uncharacterized protein family UPF0029 EEL44_20805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EEL44_20805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EEL44_20805 PF00378 Enoyl-CoA hydratase/isomerase EEL44_20810 PF02803 Thiolase, C-terminal domain EEL44_20810 PF00108 Thiolase, N-terminal domain EEL44_20815 PF03466 LysR substrate binding domain EEL44_20815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EEL44_20820 PF07690 Major Facilitator Superfamily EEL44_20825 PF12804 MobA-like NTP transferase domain EEL44_20825 PF00132 Bacterial transferase hexapeptide (six repeats) EEL44_20830 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain EEL44_20830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EEL44_20835 PF02874 ATP synthase alpha/beta family, beta-barrel domain EEL44_20835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEL44_20840 PF00231 ATP synthase EEL44_20845 PF02874 ATP synthase alpha/beta family, beta-barrel domain EEL44_20845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EEL44_20845 PF00306 ATP synthase alpha/beta chain, C terminal domain EEL44_20850 PF00213 ATP synthase delta (OSCP) subunit EEL44_20855 PF00430 ATP synthase B/B' CF(0) EEL44_20860 PF00137 ATP synthase subunit C EEL44_20865 PF00119 ATP synthase A chain EEL44_20870 PF03899 ATP synthase I chain EEL44_20875 PF02195 ParB-like nuclease domain EEL44_20875 PF17762 HTH domain found in ParB protein EEL44_20880 PF13614 AAA domain EEL44_20885 PF02527 rRNA small subunit methyltransferase G EEL44_20890 PF13932 GidA associated domain EEL44_20890 PF01134 Glucose inhibited division protein A EEL44_20900 PF00258 Flavodoxin EEL44_20905 PF10396 GTP-binding protein TrmE N-terminus EEL44_20905 PF12631 MnmE helical domain EEL44_20905 PF01926 50S ribosome-binding GTPase EEL44_20910 PF14849 YidC periplasmic domain EEL44_20910 PF02096 60Kd inner membrane protein EEL44_20915 PF01809 Putative membrane protein insertion efficiency factor EEL44_20920 PF00825 Ribonuclease P EEL44_20925 PF00468 Ribosomal protein L34 EEL44_20930 PF00005 ABC transporter EEL44_20935 PF00528 Binding-protein-dependent transport system inner membrane component EEL44_20940 PF00497 Bacterial extracellular solute-binding proteins, family 3