locus-tag class description AP033_10001 PF07690 Major Facilitator Superfamily AP033_10002 PF03009 Glycerophosphoryl diester phosphodiesterase family AP033_10004 PF01048 Phosphorylase superfamily AP033_10005 PF04973 Nicotinamide mononucleotide transporter AP033_10006 PF00356 Bacterial regulatory proteins, lacI family AP033_10007 PF00294 pfkB family carbohydrate kinase AP033_10008 PF13407 Periplasmic binding protein domain AP033_10009 PF02653 Branched-chain amino acid transport system / permease component AP033_10010 PF00005 ABC transporter AP033_10011 PF05025 RbsD / FucU transport protein family AP033_10014 PF04717 Type VI secretion system, phage-baseplate injector AP033_10014 PF16671 Actin cross-linking domain AP033_10021 PF00004 ATPase family associated with various cellular activities (AAA) AP033_10021 PF10431 C-terminal, D2-small domain, of ClpB protein AP033_10021 PF17871 AAA lid domain AP033_10021 PF07724 AAA domain (Cdc48 subfamily) AP033_10033 PF00849 RNA pseudouridylate synthase AP033_10034 PF00916 Sulfate permease family AP033_10034 PF01740 STAS domain AP033_10035 PF13419 Haloacid dehalogenase-like hydrolase AP033_10036 PF00196 Bacterial regulatory proteins, luxR family AP033_10036 PF00563 EAL domain AP033_10037 PF00581 Rhodanese-like domain AP033_10038 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP033_10038 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AP033_10039 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AP033_10039 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AP033_10041 PF02868 Thermolysin metallopeptidase, alpha-helical domain AP033_10041 PF01447 Thermolysin metallopeptidase, catalytic domain AP033_10041 PF01483 Proprotein convertase P-domain AP033_10041 PF07504 Fungalysin/Thermolysin Propeptide Motif AP033_10045 PF02001 Protein of unknown function DUF134 AP033_10048 PF00375 Sodium:dicarboxylate symporter family AP033_10052 PF09278 MerR, DNA binding AP033_10052 PF00376 MerR family regulatory protein AP033_10053 PF07690 Major Facilitator Superfamily AP033_10054 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10054 PF03466 LysR substrate binding domain AP033_10055 PF13188 PAS domain AP033_10055 PF00563 EAL domain AP033_10055 PF03707 Bacterial signalling protein N terminal repeat AP033_10055 PF00990 Diguanylate cyclase, GGDEF domain AP033_10056 PF01476 LysM domain AP033_10056 PF08525 Opacity-associated protein A N-terminal motif AP033_10056 PF01551 Peptidase family M23 AP033_10058 PF01740 STAS domain AP033_10058 PF00916 Sulfate permease family AP033_10061 PF00990 Diguanylate cyclase, GGDEF domain AP033_10061 PF00072 Response regulator receiver domain AP033_10062 PF00005 ABC transporter AP033_10063 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10064 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10065 PF12849 PBP superfamily domain AP033_10066 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10066 PF00672 HAMP domain AP033_10066 PF12729 Four helix bundle sensory module for signal transduction AP033_10070 PF07715 TonB-dependent Receptor Plug Domain AP033_10070 PF00593 TonB dependent receptor AP033_10071 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AP033_10071 PF00326 Prolyl oligopeptidase family AP033_10072 PF00270 DEAD/DEAH box helicase AP033_10072 PF00271 Helicase conserved C-terminal domain AP033_10074 PF17969 L,D-transpeptidase C-terminal domain AP033_10074 PF01476 LysM domain AP033_10074 PF03734 L,D-transpeptidase catalytic domain AP033_10075 PF03441 FAD binding domain of DNA photolyase AP033_10075 PF00875 DNA photolyase AP033_10076 PF13411 MerR HTH family regulatory protein AP033_10077 PF08349 Protein of unknown function (DUF1722) AP033_10078 PF01048 Phosphorylase superfamily AP033_10081 PF00990 Diguanylate cyclase, GGDEF domain AP033_10082 PF11742 Protein of unknown function (DUF3302) AP033_10083 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP033_10083 PF00529 HlyD membrane-fusion protein of T1SS AP033_10086 PF07238 PilZ domain AP033_10086 PF12945 Flagellar protein YcgR AP033_10087 PF03616 Sodium/glutamate symporter AP033_10090 PF02630 SCO1/SenC AP033_10092 PF00375 Sodium:dicarboxylate symporter family AP033_10093 PF01569 PAP2 superfamily AP033_10097 PF00672 HAMP domain AP033_10097 PF02743 Cache domain AP033_10097 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10100 PF00704 Glycosyl hydrolases family 18 AP033_10100 PF08329 Chitinase A, N-terminal domain AP033_10101 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AP033_10102 PF00939 Sodium:sulfate symporter transmembrane region AP033_10104 PF01757 Acyltransferase family AP033_10104 PF00842 Alanine racemase, C-terminal domain AP033_10104 PF01168 Alanine racemase, N-terminal domain AP033_10109 PF04717 Type VI secretion system, phage-baseplate injector AP033_10109 PF16671 Actin cross-linking domain AP033_10110 PF05638 Type VI secretion system effector, Hcp AP033_10111 PF02806 Alpha amylase, C-terminal all-beta domain AP033_10111 PF00128 Alpha amylase, catalytic domain AP033_10111 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AP033_10112 PF02446 4-alpha-glucanotransferase AP033_10113 PF00343 Carbohydrate phosphorylase AP033_10114 PF17874 MalT-like TPR region AP033_10114 PF00196 Bacterial regulatory proteins, luxR family AP033_10115 PF10928 Protein of unknown function (DUF2810) AP033_10116 PF17200 Single Cache domain 2 AP033_10116 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10116 PF00672 HAMP domain AP033_10117 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AP033_10117 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AP033_10118 PF01709 Transcriptional regulator AP033_10123 PF13614 AAA domain AP033_10123 PF18607 ParA helix turn helix domain AP033_10124 PF02195 ParB-like nuclease domain AP033_10124 PF08775 ParB family AP033_10125 PF13416 Bacterial extracellular solute-binding protein AP033_10126 PF13718 GNAT acetyltransferase 2 AP033_10126 PF05127 Helicase AP033_10128 PF00501 AMP-binding enzyme AP033_10132 PF00486 Transcriptional regulatory protein, C terminal AP033_10132 PF00072 Response regulator receiver domain AP033_10133 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10133 PF08521 Two-component sensor kinase N-terminal AP033_10133 PF00512 His Kinase A (phospho-acceptor) domain AP033_10134 PF08019 Phosphoethanolamine transferase EptA/EptB AP033_10134 PF00884 Sulfatase AP033_10135 PF00005 ABC transporter AP033_10135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_10136 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10136 PF12911 N-terminal TM domain of oligopeptide transport permease C AP033_10137 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10140 PF00072 Response regulator receiver domain AP033_10141 PF02895 Signal transducing histidine kinase, homodimeric domain AP033_10141 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10141 PF01627 Hpt domain AP033_10141 PF09078 CheY binding AP033_10141 PF01584 CheW-like domain AP033_10142 PF01584 CheW-like domain AP033_10143 PF01584 CheW-like domain AP033_10144 PF00672 HAMP domain AP033_10144 PF02203 Tar ligand binding domain homologue AP033_10144 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10145 PF01739 CheR methyltransferase, SAM binding domain AP033_10145 PF03705 CheR methyltransferase, all-alpha domain AP033_10146 PF03975 CheD chemotactic sensory transduction AP033_10147 PF00072 Response regulator receiver domain AP033_10147 PF01339 CheB methylesterase AP033_10148 PF02743 Cache domain AP033_10148 PF00672 HAMP domain AP033_10148 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10150 PF00072 Response regulator receiver domain AP033_10150 PF00486 Transcriptional regulatory protein, C terminal AP033_10152 PF00664 ABC transporter transmembrane region AP033_10152 PF00005 ABC transporter AP033_10152 PF03412 Peptidase C39 family AP033_10155 PF00529 HlyD membrane-fusion protein of T1SS AP033_10156 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AP033_10156 PF01243 Pyridoxamine 5'-phosphate oxidase AP033_10157 PF00072 Response regulator receiver domain AP033_10157 PF00196 Bacterial regulatory proteins, luxR family AP033_10159 PF03781 Sulfatase-modifying factor enzyme 1 AP033_10161 PF12833 Helix-turn-helix domain AP033_10162 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AP033_10162 PF00171 Aldehyde dehydrogenase family AP033_10162 PF01619 Proline dehydrogenase AP033_10162 PF14850 DNA-binding domain of Proline dehydrogenase AP033_10164 PF00474 Sodium:solute symporter family AP033_10166 PF00672 HAMP domain AP033_10166 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10166 PF02743 Cache domain AP033_10167 PF01037 Lrp/AsnC ligand binding domain AP033_10168 PF00171 Aldehyde dehydrogenase family AP033_10169 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AP033_10169 PF01276 Orn/Lys/Arg decarboxylase, major domain AP033_10169 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AP033_10170 PF13520 Amino acid permease AP033_10171 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AP033_10172 PF04013 Putative SAM-dependent RNA methyltransferase AP033_10173 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10173 PF03466 LysR substrate binding domain AP033_10174 PF00106 short chain dehydrogenase AP033_10175 PF02743 Cache domain AP033_10175 PF00672 HAMP domain AP033_10175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10176 PF03466 LysR substrate binding domain AP033_10176 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10177 PF13460 NAD(P)H-binding AP033_10179 PF00857 Isochorismatase family AP033_10182 PF00892 EamA-like transporter family AP033_10187 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AP033_10188 PF05068 Mannitol repressor AP033_10189 PF08125 Mannitol dehydrogenase C-terminal domain AP033_10189 PF01232 Mannitol dehydrogenase Rossmann domain AP033_10190 PF02378 Phosphotransferase system, EIIC AP033_10190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP033_10190 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP033_10192 PF01551 Peptidase family M23 AP033_10192 PF04225 Opacity-associated protein A LysM-like domain AP033_10193 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP033_10193 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP033_10193 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP033_10193 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP033_10194 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10195 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_10196 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10197 PF00005 ABC transporter AP033_10198 PF00793 DAHP synthetase I family AP033_10200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10200 PF00672 HAMP domain AP033_10203 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10203 PF00672 HAMP domain AP033_10203 PF12729 Four helix bundle sensory module for signal transduction AP033_10205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AP033_10205 PF00128 Alpha amylase, catalytic domain AP033_10206 PF02264 LamB porin AP033_10207 PF07148 Maltose operon periplasmic protein precursor (MalM) AP033_10210 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AP033_10214 PF03466 LysR substrate binding domain AP033_10214 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10215 PF07681 DoxX AP033_10216 PF06029 AlkA N-terminal domain AP033_10216 PF00730 HhH-GPD superfamily base excision DNA repair protein AP033_10217 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AP033_10217 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AP033_10219 PF03600 Citrate transporter AP033_10220 PF07670 Nucleoside recognition AP033_10221 PF07670 Nucleoside recognition AP033_10222 PF00462 Glutaredoxin AP033_10223 PF00892 EamA-like transporter family AP033_10224 PF13609 Gram-negative porin AP033_10225 PF02566 OsmC-like protein AP033_10226 PF01047 MarR family AP033_10227 PF01557 Fumarylacetoacetate (FAA) hydrolase family AP033_10230 PF12833 Helix-turn-helix domain AP033_10231 PF01810 LysE type translocator AP033_10233 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AP033_10235 PF00005 ABC transporter AP033_10235 PF00664 ABC transporter transmembrane region AP033_10237 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AP033_10239 PF03466 LysR substrate binding domain AP033_10239 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10240 PF00270 DEAD/DEAH box helicase AP033_10240 PF00271 Helicase conserved C-terminal domain AP033_10241 PF01554 MatE AP033_10242 PF00672 HAMP domain AP033_10242 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10243 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10243 PF08447 PAS fold AP033_10244 PF02896 PEP-utilising enzyme, TIM barrel domain AP033_10244 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AP033_10244 PF00391 PEP-utilising enzyme, mobile domain AP033_10245 PF03618 Kinase/pyrophosphorylase AP033_10247 PF01070 FMN-dependent dehydrogenase AP033_10248 PF02652 L-lactate permease AP033_10249 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10249 PF03466 LysR substrate binding domain AP033_10251 PF17200 Single Cache domain 2 AP033_10251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10251 PF00672 HAMP domain AP033_10252 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_10253 PF00005 ABC transporter AP033_10253 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_10255 PF05362 Lon protease (S16) C-terminal proteolytic domain AP033_10255 PF13654 AAA domain AP033_10256 PF17200 Single Cache domain 2 AP033_10256 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10256 PF00672 HAMP domain AP033_10258 PF07690 Major Facilitator Superfamily AP033_10260 PF06865 Pyrimidine/purine nucleoside phosphorylase AP033_10261 PF05726 Pirin C-terminal cupin domain AP033_10261 PF02678 Pirin AP033_10263 PF00563 EAL domain AP033_10263 PF00990 Diguanylate cyclase, GGDEF domain AP033_10264 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10264 PF03466 LysR substrate binding domain AP033_10268 PF00990 Diguanylate cyclase, GGDEF domain AP033_10268 PF00563 EAL domain AP033_10268 PF03707 Bacterial signalling protein N terminal repeat AP033_10271 PF00990 Diguanylate cyclase, GGDEF domain AP033_10272 PF01047 MarR family AP033_10273 PF00072 Response regulator receiver domain AP033_10273 PF01584 CheW-like domain AP033_10275 PF00196 Bacterial regulatory proteins, luxR family AP033_10276 PF01906 Putative heavy-metal-binding AP033_10279 PF13302 Acetyltransferase (GNAT) domain AP033_10280 PF08402 TOBE domain AP033_10280 PF00005 ABC transporter AP033_10281 PF01547 Bacterial extracellular solute-binding protein AP033_10282 PF14785 Maltose transport system permease protein MalF P2 domain AP033_10282 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10283 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10286 PF08220 DeoR-like helix-turn-helix domain AP033_10286 PF00455 DeoR C terminal sensor domain AP033_10287 PF08448 PAS fold AP033_10287 PF00990 Diguanylate cyclase, GGDEF domain AP033_10292 PF00313 'Cold-shock' DNA-binding domain AP033_10294 PF05661 Protein of unknown function (DUF808) AP033_10295 PF05958 tRNA (Uracil-5-)-methyltransferase AP033_10297 PF05656 Protein of unknown function (DUF805) AP033_10299 PF01979 Amidohydrolase family AP033_10300 PF03476 MOSC N-terminal beta barrel domain AP033_10300 PF03473 MOSC domain AP033_10300 PF03473 MOSC domain AP033_10300 PF03476 MOSC N-terminal beta barrel domain AP033_10300 PF00111 2Fe-2S iron-sulfur cluster binding domain AP033_10300 PF00111 2Fe-2S iron-sulfur cluster binding domain AP033_10301 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10301 PF02743 Cache domain AP033_10301 PF00672 HAMP domain AP033_10307 PF00005 ABC transporter AP033_10308 PF01032 FecCD transport family AP033_10309 PF01497 Periplasmic binding protein AP033_10310 PF02472 Biopolymer transport protein ExbD/TolR AP033_10311 PF01618 MotA/TolQ/ExbB proton channel family AP033_10312 PF03544 Gram-negative bacterial TonB protein C-terminal AP033_10313 PF04055 Radical SAM superfamily AP033_10314 PF06228 Haem utilisation ChuX/HutX AP033_10315 PF01243 Pyridoxamine 5'-phosphate oxidase AP033_10316 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10316 PF00672 HAMP domain AP033_10317 PF17853 GGDEF-like domain AP033_10317 PF05651 Putative sugar diacid recognition AP033_10317 PF13556 PucR C-terminal helix-turn-helix domain AP033_10318 PF02447 GntP family permease AP033_10319 PF02595 Glycerate kinase family AP033_10324 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AP033_10324 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AP033_10325 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AP033_10326 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AP033_10326 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AP033_10327 PF01966 HD domain AP033_10332 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_10333 PF03466 LysR substrate binding domain AP033_10333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10334 PF01053 Cys/Met metabolism PLP-dependent enzyme AP033_10335 PF00155 Aminotransferase class I and II AP033_10336 PF00107 Zinc-binding dehydrogenase AP033_10336 PF08240 Alcohol dehydrogenase GroES-like domain AP033_10337 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP033_10342 PF12167 Arm DNA-binding domain AP033_10342 PF00589 Phage integrase family AP033_10345 PF01381 Helix-turn-helix AP033_10345 PF00717 Peptidase S24-like AP033_10349 PF03354 Phage Terminase AP033_10354 PF00313 'Cold-shock' DNA-binding domain AP033_10356 PF06965 Na+/H+ antiporter 1 AP033_10359 PF01022 Bacterial regulatory protein, arsR family AP033_10360 PF01758 Sodium Bile acid symporter family AP033_10383 PF02447 GntP family permease AP033_10384 PF01370 NAD dependent epimerase/dehydratase family AP033_10385 PF01261 Xylose isomerase-like TIM barrel AP033_10386 PF00596 Class II Aldolase and Adducin N-terminal domain AP033_10387 PF07005 Sugar-binding N-terminal domain AP033_10387 PF17042 Nucleotide-binding C-terminal domain AP033_10388 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AP033_10388 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AP033_10389 PF08220 DeoR-like helix-turn-helix domain AP033_10389 PF00455 DeoR C terminal sensor domain AP033_10391 PF01609 Transposase DDE domain AP033_10391 PF05598 Transposase domain (DUF772) AP033_10392 PF00291 Pyridoxal-phosphate dependent enzyme AP033_10395 PF02322 Cytochrome bd terminal oxidase subunit II AP033_10396 PF01654 Cytochrome bd terminal oxidase subunit I AP033_10397 PF00392 Bacterial regulatory proteins, gntR family AP033_10397 PF00155 Aminotransferase class I and II AP033_10398 PF00768 D-alanyl-D-alanine carboxypeptidase AP033_10401 PF03922 OmpW family AP033_10402 PF04151 Bacterial pre-peptidase C-terminal domain AP033_10402 PF02868 Thermolysin metallopeptidase, alpha-helical domain AP033_10402 PF01447 Thermolysin metallopeptidase, catalytic domain AP033_10402 PF03413 Peptidase propeptide and YPEB domain AP033_10402 PF07504 Fungalysin/Thermolysin Propeptide Motif AP033_10403 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10403 PF13426 PAS domain AP033_10403 PF08447 PAS fold AP033_10404 PF12262 Bacterial virulence factor lipase N-terminal AP033_10405 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AP033_10406 PF00128 Alpha amylase, catalytic domain AP033_10407 PF00248 Aldo/keto reductase family AP033_10409 PF00005 ABC transporter AP033_10410 PF00005 ABC transporter AP033_10410 PF02687 FtsX-like permease family AP033_10410 PF12704 MacB-like periplasmic core domain AP033_10413 PF13492 GAF domain AP033_10413 PF06580 Histidine kinase AP033_10413 PF07694 5TMR of 5TMR-LYT AP033_10413 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10414 PF04397 LytTr DNA-binding domain AP033_10414 PF00072 Response regulator receiver domain AP033_10417 PF00990 Diguanylate cyclase, GGDEF domain AP033_10418 PF13520 Amino acid permease AP033_10421 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_10421 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AP033_10422 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AP033_10423 PF02566 OsmC-like protein AP033_10424 PF03471 Transporter associated domain AP033_10424 PF00571 CBS domain AP033_10424 PF01595 Cyclin M transmembrane N-terminal domain AP033_10425 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AP033_10425 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_10425 PF14602 Hexapeptide repeat of succinyl-transferase AP033_10426 PF00892 EamA-like transporter family AP033_10428 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10428 PF03466 LysR substrate binding domain AP033_10432 PF00501 AMP-binding enzyme AP033_10432 PF13193 AMP-binding enzyme C-terminal domain AP033_10433 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AP033_10434 PF01329 Pterin 4 alpha carbinolamine dehydratase AP033_10435 PF00583 Acetyltransferase (GNAT) family AP033_10436 PF00202 Aminotransferase class-III AP033_10437 PF06339 Ectoine synthase AP033_10438 PF00696 Amino acid kinase family AP033_10438 PF13840 ACT domain AP033_10440 PF00118 TCP-1/cpn60 chaperonin family AP033_10441 PF00166 Chaperonin 10 Kd subunit AP033_10442 PF00571 CBS domain AP033_10442 PF03448 MgtE intracellular N domain AP033_10442 PF01769 Divalent cation transporter AP033_10444 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AP033_10444 PF17944 Arginine decarboxylase C-terminal helical extension AP033_10444 PF17810 Arginine decarboxylase helical bundle domain AP033_10445 PF00491 Arginase family AP033_10446 PF04389 Peptidase family M28 AP033_10446 PF04151 Bacterial pre-peptidase C-terminal domain AP033_10447 PF04151 Bacterial pre-peptidase C-terminal domain AP033_10447 PF03413 Peptidase propeptide and YPEB domain AP033_10447 PF07504 Fungalysin/Thermolysin Propeptide Motif AP033_10447 PF02868 Thermolysin metallopeptidase, alpha-helical domain AP033_10447 PF01447 Thermolysin metallopeptidase, catalytic domain AP033_10448 PF18416 N-acetylglucosamine binding protein domain 2 AP033_10448 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AP033_10449 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AP033_10450 PF01575 MaoC like domain AP033_10451 PF12849 PBP superfamily domain AP033_10453 PF00773 RNB domain AP033_10453 PF00575 S1 RNA binding domain AP033_10453 PF08206 Ribonuclease B OB domain AP033_10454 PF03880 DbpA RNA binding domain AP033_10454 PF00271 Helicase conserved C-terminal domain AP033_10454 PF00270 DEAD/DEAH box helicase AP033_10456 PF00884 Sulfatase AP033_10457 PF00294 pfkB family carbohydrate kinase AP033_10460 PF13419 Haloacid dehalogenase-like hydrolase AP033_10462 PF00239 Resolvase, N terminal domain AP033_10462 PF02796 Helix-turn-helix domain of resolvase AP033_10467 PF01527 Transposase AP033_10468 PF00665 Integrase core domain AP033_10470 PF03477 ATP cone domain AP033_10470 PF13597 Anaerobic ribonucleoside-triphosphate reductase AP033_10472 PF00155 Aminotransferase class I and II AP033_10473 PF18030 RimK PreATP-grasp domain AP033_10473 PF08443 RimK-like ATP-grasp domain AP033_10474 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP033_10474 PF02378 Phosphotransferase system, EIIC AP033_10475 PF00294 pfkB family carbohydrate kinase AP033_10476 PF00381 PTS HPr component phosphorylation site AP033_10476 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP033_10477 PF00381 PTS HPr component phosphorylation site AP033_10477 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP033_10478 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AP033_10478 PF00356 Bacterial regulatory proteins, lacI family AP033_10479 PF12320 Type 5 capsule protein repressor C-terminal domain AP033_10479 PF00149 Calcineurin-like phosphoesterase AP033_10480 PF13476 AAA domain AP033_10481 PF00072 Response regulator receiver domain AP033_10481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10482 PF00155 Aminotransferase class I and II AP033_10484 PF00654 Voltage gated chloride channel AP033_10485 PF02492 CobW/HypB/UreG, nucleotide-binding domain AP033_10485 PF07683 Cobalamin synthesis protein cobW C-terminal domain AP033_10486 PF01926 50S ribosome-binding GTPase AP033_10487 PF02705 K+ potassium transporter AP033_10488 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AP033_10488 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP033_10488 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AP033_10488 PF10371 Domain of unknown function AP033_10488 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AP033_10489 PF02702 Osmosensitive K+ channel His kinase sensor domain AP033_10489 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10489 PF00512 His Kinase A (phospho-acceptor) domain AP033_10489 PF13493 Domain of unknown function (DUF4118) AP033_10490 PF00486 Transcriptional regulatory protein, C terminal AP033_10490 PF00072 Response regulator receiver domain AP033_10491 PF02416 mttA/Hcf106 family AP033_10492 PF09335 SNARE associated Golgi protein AP033_10494 PF10388 EAL-domain associated signalling protein domain AP033_10494 PF00563 EAL domain AP033_10496 PF01292 Prokaryotic cytochrome b561 AP033_10497 PF04264 YceI-like domain AP033_10498 PF01226 Formate/nitrite transporter AP033_10499 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10499 PF03466 LysR substrate binding domain AP033_10500 PF06496 Protein of unknown function (DUF1097) AP033_10501 PF11398 Protein of unknown function (DUF2813) AP033_10502 PF00149 Calcineurin-like phosphoesterase AP033_10502 PF02872 5'-nucleotidase, C-terminal domain AP033_10504 PF03741 Integral membrane protein TerC family AP033_10506 PF08274 PhnA Zinc-Ribbon AP033_10506 PF03831 PhnA domain AP033_10512 PF00990 Diguanylate cyclase, GGDEF domain AP033_10512 PF17151 Periplasmic sensor domain AP033_10516 PF17158 Membrane-associated sensor, integral membrane domain AP033_10516 PF00990 Diguanylate cyclase, GGDEF domain AP033_10519 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AP033_10519 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AP033_10519 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AP033_10520 PF02233 NAD(P) transhydrogenase beta subunit AP033_10522 PF00486 Transcriptional regulatory protein, C terminal AP033_10522 PF00072 Response regulator receiver domain AP033_10525 PF03701 Uncharacterised protein family (UPF0181) AP033_10527 PF01253 Translation initiation factor SUI1 AP033_10529 PF01820 D-ala D-ala ligase N-terminus AP033_10529 PF07478 D-ala D-ala ligase C-terminus AP033_10531 PF13380 CoA binding domain AP033_10531 PF00583 Acetyltransferase (GNAT) family AP033_10531 PF13607 Succinyl-CoA ligase like flavodoxin domain AP033_10532 PF03466 LysR substrate binding domain AP033_10532 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10533 PF00593 TonB dependent receptor AP033_10533 PF07715 TonB-dependent Receptor Plug Domain AP033_10536 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP033_10536 PF12793 Sugar transport-related sRNA regulator N-term AP033_10538 PF03061 Thioesterase superfamily AP033_10542 PF02798 Glutathione S-transferase, N-terminal domain AP033_10542 PF00043 Glutathione S-transferase, C-terminal domain AP033_10545 PF03479 Plants and Prokaryotes Conserved (PCC) domain AP033_10545 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_10545 PF12804 MobA-like NTP transferase domain AP033_10546 PF00005 ABC transporter AP033_10546 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_10547 PF12911 N-terminal TM domain of oligopeptide transport permease C AP033_10547 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10548 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10549 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP033_10554 PF00854 POT family AP033_10556 PF07702 UTRA domain AP033_10556 PF00392 Bacterial regulatory proteins, gntR family AP033_10557 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10558 PF00005 ABC transporter AP033_10560 PF00266 Aminotransferase class-V AP033_10562 PF13419 Haloacid dehalogenase-like hydrolase AP033_10563 PF14760 Rnk N-terminus AP033_10563 PF01272 Transcription elongation factor, GreA/GreB, C-term AP033_10564 PF13419 Haloacid dehalogenase-like hydrolase AP033_10567 PF01741 Large-conductance mechanosensitive channel, MscL AP033_10568 PF01268 Formate--tetrahydrofolate ligase AP033_10569 PF01641 SelR domain AP033_10569 PF01625 Peptide methionine sulfoxide reductase AP033_10570 PF01227 GTP cyclohydrolase I AP033_10571 PF00994 Probable molybdopterin binding domain AP033_10571 PF03454 MoeA C-terminal region (domain IV) AP033_10571 PF03453 MoeA N-terminal region (domain I and II) AP033_10572 PF00899 ThiF family AP033_10574 PF00581 Rhodanese-like domain AP033_10575 PF00704 Glycosyl hydrolases family 18 AP033_10575 PF08329 Chitinase A, N-terminal domain AP033_10576 PF04198 Putative sugar-binding domain AP033_10577 PF00923 Transaldolase/Fructose-6-phosphate aldolase AP033_10578 PF02779 Transketolase, pyrimidine binding domain AP033_10578 PF02780 Transketolase, C-terminal domain AP033_10578 PF00456 Transketolase, thiamine diphosphate binding domain AP033_10584 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP033_10584 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP033_10587 PF06942 GlpM protein AP033_10589 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_10589 PF03466 LysR substrate binding domain AP033_10590 PF03992 Antibiotic biosynthesis monooxygenase AP033_10591 PF00881 Nitroreductase family AP033_10592 PF00873 AcrB/AcrD/AcrF family AP033_10595 PF04143 Sulphur transport AP033_10598 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP033_10598 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_10607 PF00367 phosphotransferase system, EIIB AP033_10607 PF02378 Phosphotransferase system, EIIC AP033_10609 PF00251 Glycosyl hydrolases family 32 N-terminal domain AP033_10609 PF08244 Glycosyl hydrolases family 32 C terminal AP033_10610 PF00294 pfkB family carbohydrate kinase AP033_10611 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AP033_10611 PF01266 FAD dependent oxidoreductase AP033_10612 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10612 PF00672 HAMP domain AP033_10613 PF13488 Glycine zipper AP033_10613 PF00691 OmpA family AP033_10614 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AP033_10614 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP033_10615 PF13419 Haloacid dehalogenase-like hydrolase AP033_10616 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10616 PF00672 HAMP domain AP033_10616 PF12729 Four helix bundle sensory module for signal transduction AP033_10617 PF03606 C4-dicarboxylate anaerobic carrier AP033_10618 PF03313 Serine dehydratase alpha chain AP033_10618 PF03315 Serine dehydratase beta chain AP033_10619 PF00474 Sodium:solute symporter family AP033_10623 PF00356 Bacterial regulatory proteins, lacI family AP033_10624 PF00196 Bacterial regulatory proteins, luxR family AP033_10624 PF00072 Response regulator receiver domain AP033_10625 PF00672 HAMP domain AP033_10625 PF07730 Histidine kinase AP033_10625 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AP033_10625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10626 PF12838 4Fe-4S dicluster domain AP033_10626 PF13187 4Fe-4S dicluster domain AP033_10628 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AP033_10628 PF01568 Molydopterin dinucleotide binding domain AP033_10628 PF00384 Molybdopterin oxidoreductase AP033_10629 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AP033_10630 PF03264 NapC/NirT cytochrome c family, N-terminal region AP033_10632 PF01966 HD domain AP033_10633 PF00072 Response regulator receiver domain AP033_10633 PF00196 Bacterial regulatory proteins, luxR family AP033_10634 PF07730 Histidine kinase AP033_10634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10634 PF05231 MASE1 AP033_10635 PF07690 Major Facilitator Superfamily AP033_10637 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10638 PF08402 TOBE domain AP033_10638 PF00005 ABC transporter AP033_10639 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AP033_10641 PF00108 Thiolase, N-terminal domain AP033_10641 PF02803 Thiolase, C-terminal domain AP033_10642 PF00106 short chain dehydrogenase AP033_10643 PF02355 Protein export membrane protein AP033_10643 PF07549 SecD/SecF GG Motif AP033_10644 PF07549 SecD/SecF GG Motif AP033_10644 PF13721 SecD export protein N-terminal TM region AP033_10644 PF02355 Protein export membrane protein AP033_10647 PF17158 Membrane-associated sensor, integral membrane domain AP033_10647 PF00990 Diguanylate cyclase, GGDEF domain AP033_10648 PF00483 Nucleotidyl transferase AP033_10649 PF06483 Chitinase C AP033_10649 PF00704 Glycosyl hydrolases family 18 AP033_10650 PF00465 Iron-containing alcohol dehydrogenase AP033_10652 PF00072 Response regulator receiver domain AP033_10652 PF14532 Sigma-54 interaction domain AP033_10652 PF02954 Bacterial regulatory protein, Fis family AP033_10653 PF02743 Cache domain AP033_10653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10653 PF00512 His Kinase A (phospho-acceptor) domain AP033_10656 PF07690 Major Facilitator Superfamily AP033_10657 PF00224 Pyruvate kinase, barrel domain AP033_10657 PF02887 Pyruvate kinase, alpha/beta domain AP033_10658 PF00672 HAMP domain AP033_10658 PF01627 Hpt domain AP033_10658 PF00512 His Kinase A (phospho-acceptor) domain AP033_10658 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10658 PF00072 Response regulator receiver domain AP033_10659 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AP033_10660 PF02142 MGS-like domain AP033_10661 PF00857 Isochorismatase family AP033_10662 PF01219 Prokaryotic diacylglycerol kinase AP033_10665 PF13361 UvrD-like helicase C-terminal domain AP033_10665 PF00580 UvrD/REP helicase N-terminal domain AP033_10665 PF12462 DNA helicase IV / RNA helicase N terminal AP033_10666 PF12805 FUSC-like inner membrane protein yccS AP033_10667 PF00072 Response regulator receiver domain AP033_10667 PF08448 PAS fold AP033_10667 PF00512 His Kinase A (phospho-acceptor) domain AP033_10667 PF13188 PAS domain AP033_10667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10672 PF00005 ABC transporter AP033_10672 PF03459 TOBE domain AP033_10673 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10675 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AP033_10675 PF07685 CobB/CobQ-like glutamine amidotransferase domain AP033_10676 PF01609 Transposase DDE domain AP033_10676 PF05598 Transposase domain (DUF772) AP033_10677 PF05598 Transposase domain (DUF772) AP033_10677 PF01609 Transposase DDE domain AP033_10683 PF00512 His Kinase A (phospho-acceptor) domain AP033_10683 PF09308 LuxQ, periplasmic AP033_10683 PF00072 Response regulator receiver domain AP033_10683 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10684 PF13407 Periplasmic binding protein domain AP033_10686 PF01541 GIY-YIG catalytic domain AP033_10687 PF04337 Protein of unknown function, DUF480 AP033_10689 PF04363 Protein of unknown function (DUF496) AP033_10692 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AP033_10692 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AP033_10693 PF00230 Major intrinsic protein AP033_10694 PF04324 BFD-like [2Fe-2S] binding domain AP033_10694 PF01266 FAD dependent oxidoreductase AP033_10695 PF00890 FAD binding domain AP033_10696 PF02754 Cysteine-rich domain AP033_10696 PF13183 4Fe-4S dicluster domain AP033_10697 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AP033_10697 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AP033_10698 PF00085 Thioredoxin AP033_10699 PF07690 Major Facilitator Superfamily AP033_10703 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10704 PF00528 Binding-protein-dependent transport system inner membrane component AP033_10705 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_10706 PF00005 ABC transporter AP033_10708 PF05762 VWA domain containing CoxE-like protein AP033_10709 PF17868 AAA lid domain AP033_10709 PF07728 AAA domain (dynein-related subfamily) AP033_10709 PF12592 Protein of unknown function (DUF3763) AP033_10710 PF00293 NUDIX domain AP033_10711 PF01212 Beta-eliminating lyase AP033_10712 PF00034 Cytochrome c AP033_10713 PF00440 Bacterial regulatory proteins, tetR family AP033_10713 PF08361 MAATS-type transcriptional repressor, C-terminal region AP033_10714 PF00271 Helicase conserved C-terminal domain AP033_10714 PF00270 DEAD/DEAH box helicase AP033_10715 PF04336 Acyl carrier protein phosphodiesterase AP033_10717 PF03222 Tryptophan/tyrosine permease family AP033_10718 PF12729 Four helix bundle sensory module for signal transduction AP033_10718 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10718 PF00672 HAMP domain AP033_10719 PF16363 GDP-mannose 4,6 dehydratase AP033_10720 PF03746 LamB/YcsF family AP033_10722 PF02626 Carboxyltransferase domain, subdomain A and B AP033_10724 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AP033_10724 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AP033_10726 PF00005 ABC transporter AP033_10727 PF13472 GDSL-like Lipase/Acylhydrolase family AP033_10728 PF12241 Trans-2-enoyl-CoA reductase catalytic region AP033_10728 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AP033_10728 PF07055 Enoyl reductase FAD binding domain AP033_10729 PF00498 FHA domain AP033_10729 PF00563 EAL domain AP033_10729 PF00990 Diguanylate cyclase, GGDEF domain AP033_10731 PF00226 DnaJ domain AP033_10731 PF01556 DnaJ C terminal domain AP033_10731 PF00684 DnaJ central domain AP033_10734 PF00665 Integrase core domain AP033_10735 PF01527 Transposase AP033_10737 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_10747 PF01797 Transposase IS200 like AP033_10751 PF07859 alpha/beta hydrolase fold AP033_10759 PF05598 Transposase domain (DUF772) AP033_10759 PF01609 Transposase DDE domain AP033_10764 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AP033_10766 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_10769 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_10770 PF05598 Transposase domain (DUF772) AP033_10770 PF01609 Transposase DDE domain AP033_10775 PF01965 DJ-1/PfpI family AP033_10775 PF12833 Helix-turn-helix domain AP033_10785 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AP033_10786 PF08212 Lipocalin-like domain AP033_10788 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AP033_10806 PF05598 Transposase domain (DUF772) AP033_10806 PF01609 Transposase DDE domain AP033_10808 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_10814 PF02567 Phenazine biosynthesis-like protein AP033_10815 PF01381 Helix-turn-helix AP033_10816 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB AP033_10831 PF05598 Transposase domain (DUF772) AP033_10831 PF01609 Transposase DDE domain AP033_10835 PF12833 Helix-turn-helix domain AP033_10835 PF01965 DJ-1/PfpI family AP033_10837 PF00665 Integrase core domain AP033_10838 PF01527 Transposase AP033_10839 PF01725 Ham1 family AP033_10841 PF01609 Transposase DDE domain AP033_10841 PF05598 Transposase domain (DUF772) AP033_10842 PF17676 LD-carboxypeptidase C-terminal domain AP033_10842 PF02016 LD-carboxypeptidase N-terminal domain AP033_10845 PF02567 Phenazine biosynthesis-like protein AP033_10853 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_10855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_10864 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_10877 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_10878 PF00561 alpha/beta hydrolase fold AP033_10889 PF00589 Phage integrase family AP033_10889 PF13495 Phage integrase, N-terminal SAM-like domain AP033_10890 PF00453 Ribosomal protein L20 AP033_10891 PF01632 Ribosomal protein L35 AP033_10892 PF05198 Translation initiation factor IF-3, N-terminal domain AP033_10892 PF00707 Translation initiation factor IF-3, C-terminal domain AP033_10893 PF03129 Anticodon binding domain AP033_10893 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AP033_10893 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP033_10893 PF02824 TGS domain AP033_10904 PF17482 Phage tail sheath C-terminal domain AP033_10904 PF04984 Phage tail sheath protein subtilisin-like domain AP033_10906 PF07484 Phage Tail Collar Domain AP033_10922 PF00959 Phage lysozyme AP033_10932 PF01381 Helix-turn-helix AP033_10932 PF00717 Peptidase S24-like AP033_10941 PF01571 Aminomethyltransferase folate-binding domain AP033_10941 PF08669 Glycine cleavage T-protein C-terminal barrel domain AP033_10943 PF00464 Serine hydroxymethyltransferase AP033_10944 PF01597 Glycine cleavage H-protein AP033_10945 PF02347 Glycine cleavage system P-protein AP033_10946 PF01797 Transposase IS200 like AP033_10948 PF00194 Eukaryotic-type carbonic anhydrase AP033_10951 PF00768 D-alanyl-D-alanine carboxypeptidase AP033_10951 PF07943 Penicillin-binding protein 5, C-terminal domain AP033_10953 PF02743 Cache domain AP033_10953 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10953 PF00672 HAMP domain AP033_10954 PF07690 Major Facilitator Superfamily AP033_10962 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10962 PF00672 HAMP domain AP033_10962 PF00512 His Kinase A (phospho-acceptor) domain AP033_10963 PF00486 Transcriptional regulatory protein, C terminal AP033_10963 PF00072 Response regulator receiver domain AP033_10966 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_10967 PF00128 Alpha amylase, catalytic domain AP033_10968 PF01292 Prokaryotic cytochrome b561 AP033_10970 PF08220 DeoR-like helix-turn-helix domain AP033_10970 PF00455 DeoR C terminal sensor domain AP033_10971 PF03611 PTS system sugar-specific permease component AP033_10972 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP033_10973 PF00596 Class II Aldolase and Adducin N-terminal domain AP033_10975 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AP033_10976 PF01261 Xylose isomerase-like TIM barrel AP033_10978 PF00072 Response regulator receiver domain AP033_10978 PF00486 Transcriptional regulatory protein, C terminal AP033_10979 PF00672 HAMP domain AP033_10979 PF00512 His Kinase A (phospho-acceptor) domain AP033_10979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_10982 PF00871 Acetokinase family AP033_10984 PF00593 TonB dependent receptor AP033_10984 PF07715 TonB-dependent Receptor Plug Domain AP033_10985 PF12833 Helix-turn-helix domain AP033_10986 PF00005 ABC transporter AP033_10987 PF01032 FecCD transport family AP033_10988 PF01032 FecCD transport family AP033_10992 PF05547 Immune inhibitor A peptidase M6 AP033_10992 PF00801 PKD domain AP033_10993 PF03280 Proteobacterial lipase chaperone protein AP033_10994 PF00561 alpha/beta hydrolase fold AP033_10995 PF12729 Four helix bundle sensory module for signal transduction AP033_10995 PF00672 HAMP domain AP033_10995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_10996 PF07968 Leukocidin/Hemolysin toxin family AP033_10996 PF12563 Hemolytic toxin N terminal AP033_10996 PF16458 Beta-prism lectin AP033_10997 PF00657 GDSL-like Lipase/Acylhydrolase AP033_10998 PF00990 Diguanylate cyclase, GGDEF domain AP033_10998 PF08448 PAS fold AP033_10999 PF07690 Major Facilitator Superfamily AP033_11000 PF03553 Na+/H+ antiporter family AP033_11002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_11002 PF00512 His Kinase A (phospho-acceptor) domain AP033_11002 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_11003 PF11849 Domain of unknown function (DUF3369) AP033_11004 PF01467 Cytidylyltransferase-like AP033_11005 PF02540 NAD synthase AP033_11006 PF03605 Anaerobic c4-dicarboxylate membrane transporter AP033_11007 PF00271 Helicase conserved C-terminal domain AP033_11007 PF00270 DEAD/DEAH box helicase AP033_11009 PF00478 IMP dehydrogenase / GMP reductase domain AP033_11011 PF07885 Ion channel AP033_11013 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP033_11013 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP033_11014 PF01256 Carbohydrate kinase AP033_11014 PF03853 YjeF-related protein N-terminus AP033_11016 PF00072 Response regulator receiver domain AP033_11019 PF03889 Alternative ribosome-rescue factor A AP033_11020 PF00313 'Cold-shock' DNA-binding domain AP033_11021 PF00042 Globin AP033_11021 PF00970 Oxidoreductase FAD-binding domain AP033_11021 PF00175 Oxidoreductase NAD-binding domain AP033_11022 PF01590 GAF domain AP033_11022 PF00158 Sigma-54 interaction domain AP033_11024 PF07687 Peptidase dimerisation domain AP033_11024 PF01546 Peptidase family M20/M25/M40 AP033_11025 PF07662 Na+ dependent nucleoside transporter C-terminus AP033_11025 PF01773 Na+ dependent nucleoside transporter N-terminus AP033_11025 PF07670 Nucleoside recognition AP033_11028 PF00672 HAMP domain AP033_11028 PF02743 Cache domain AP033_11028 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_11029 PF17863 AAA lid domain AP033_11029 PF07726 ATPase family associated with various cellular activities (AAA) AP033_11030 PF01882 Protein of unknown function DUF58 AP033_11033 PF07584 Aerotolerance regulator N-terminal AP033_11033 PF13519 von Willebrand factor type A domain AP033_11036 PF00313 'Cold-shock' DNA-binding domain AP033_11037 PF00990 Diguanylate cyclase, GGDEF domain AP033_11037 PF08448 PAS fold AP033_11037 PF00563 EAL domain AP033_11039 PF12843 Putative quorum-sensing-regulated virulence factor AP033_11040 PF01212 Beta-eliminating lyase AP033_11041 PF03222 Tryptophan/tyrosine permease family AP033_11042 PF00582 Universal stress protein family AP033_11044 PF13244 Domain of unknown function (DUF4040) AP033_11044 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AP033_11044 PF00361 Proton-conducting membrane transporter AP033_11044 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AP033_11048 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AP033_11049 PF03334 Na+/H+ antiporter subunit AP033_11050 PF00175 Oxidoreductase NAD-binding domain AP033_11050 PF00970 Oxidoreductase FAD-binding domain AP033_11050 PF00042 Globin AP033_11051 PF01327 Polypeptide deformylase AP033_11052 PF00041 Fibronectin type III domain AP033_11052 PF12561 ToxR activated gene A lipoprotein domain AP033_11053 PF01266 FAD dependent oxidoreductase AP033_11056 PF00072 Response regulator receiver domain AP033_11056 PF02954 Bacterial regulatory protein, Fis family AP033_11056 PF00158 Sigma-54 interaction domain AP033_11057 PF00512 His Kinase A (phospho-acceptor) domain AP033_11057 PF02743 Cache domain AP033_11057 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20001 PF04362 Bacterial Fe(2+) trafficking AP033_20002 PF10576 Iron-sulfur binding domain of endonuclease III AP033_20002 PF00633 Helix-hairpin-helix motif AP033_20002 PF00730 HhH-GPD superfamily base excision DNA repair protein AP033_20002 PF14815 NUDIX domain AP033_20003 PF02390 Putative methyltransferase AP033_20004 PF04960 Glutaminase AP033_20005 PF04055 Radical SAM superfamily AP033_20005 PF06969 HemN C-terminal domain AP033_20006 PF01725 Ham1 family AP033_20008 PF02594 Uncharacterised ACR, YggU family COG1872 AP033_20009 PF02325 YGGT family AP033_20010 PF03807 NADP oxidoreductase coenzyme F420-dependent AP033_20010 PF14748 Pyrroline-5-carboxylate reductase dimerisation AP033_20011 PF01168 Alanine racemase, N-terminal domain AP033_20012 PF00437 Type II/IV secretion system protein AP033_20013 PF00437 Type II/IV secretion system protein AP033_20015 PF01479 S4 domain AP033_20015 PF00579 tRNA synthetases class I (W and Y) AP033_20016 PF03652 Holliday junction resolvase AP033_20017 PF02622 Uncharacterized ACR, COG1678 AP033_20018 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AP033_20018 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AP033_20019 PF04452 RNA methyltransferase AP033_20020 PF04231 Endonuclease I AP033_20021 PF17283 SprT-like zinc ribbon domain AP033_20021 PF10263 SprT-like family AP033_20022 PF02773 S-adenosylmethionine synthetase, C-terminal domain AP033_20022 PF02772 S-adenosylmethionine synthetase, central domain AP033_20022 PF00438 S-adenosylmethionine synthetase, N-terminal domain AP033_20023 PF00456 Transketolase, thiamine diphosphate binding domain AP033_20023 PF02780 Transketolase, C-terminal domain AP033_20023 PF02779 Transketolase, pyrimidine binding domain AP033_20024 PF03466 LysR substrate binding domain AP033_20024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20025 PF00593 TonB dependent receptor AP033_20025 PF07715 TonB-dependent Receptor Plug Domain AP033_20026 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AP033_20026 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_20027 PF00162 Phosphoglycerate kinase AP033_20028 PF01116 Fructose-bisphosphate aldolase class-II AP033_20029 PF05552 Conserved TM helix AP033_20029 PF00924 Mechanosensitive ion channel AP033_20030 PF01810 LysE type translocator AP033_20031 PF03466 LysR substrate binding domain AP033_20031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20032 PF04402 Protein of unknown function (DUF541) AP033_20034 PF02887 Pyruvate kinase, alpha/beta domain AP033_20034 PF00224 Pyruvate kinase, barrel domain AP033_20035 PF08220 DeoR-like helix-turn-helix domain AP033_20035 PF00455 DeoR C terminal sensor domain AP033_20036 PF01380 SIS domain AP033_20037 PF03480 Bacterial extracellular solute-binding protein, family 7 AP033_20040 PF04542 Sigma-70 region 2 AP033_20040 PF03979 Sigma-70 factor, region 1.1 AP033_20040 PF00140 Sigma-70 factor, region 1.2 AP033_20040 PF04539 Sigma-70 region 3 AP033_20040 PF04545 Sigma-70, region 4 AP033_20040 PF04546 Sigma-70, non-essential region AP033_20041 PF08278 DNA primase DnaG DnaB-binding AP033_20041 PF01807 CHC2 zinc finger AP033_20041 PF10410 DnaB-helicase binding domain of primase AP033_20041 PF08275 DNA primase catalytic core, N-terminal domain AP033_20042 PF09424 Yqey-like protein AP033_20043 PF01165 Ribosomal protein S21 AP033_20044 PF00814 Glycoprotease family AP033_20045 PF00561 alpha/beta hydrolase fold AP033_20046 PF02660 Glycerol-3-phosphate acyltransferase AP033_20047 PF02152 Dihydroneopterin aldolase AP033_20048 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AP033_20049 PF02673 Bacitracin resistance protein BacA AP033_20050 PF04977 Septum formation initiator AP033_20051 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AP033_20052 PF02542 YgbB family AP033_20053 PF01142 tRNA pseudouridine synthase D (TruD) AP033_20054 PF01975 Survival protein SurE AP033_20056 PF01551 Peptidase family M23 AP033_20056 PF01476 LysM domain AP033_20057 PF04542 Sigma-70 region 2 AP033_20057 PF04539 Sigma-70 region 3 AP033_20057 PF04545 Sigma-70, region 4 AP033_20057 PF00140 Sigma-70 factor, region 1.2 AP033_20058 PF01624 MutS domain I AP033_20058 PF05188 MutS domain II AP033_20058 PF05192 MutS domain III AP033_20058 PF05190 MutS family domain IV AP033_20058 PF00488 MutS domain V AP033_20059 PF00291 Pyridoxal-phosphate dependent enzyme AP033_20061 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20062 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20063 PF00005 ABC transporter AP033_20063 PF12857 TOBE-like domain AP033_20064 PF02464 Competence-damaged protein AP033_20065 PF00154 recA bacterial DNA recombination protein AP033_20066 PF02631 RecX family AP033_20067 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AP033_20067 PF02272 DHHA1 domain AP033_20067 PF01411 tRNA synthetases class II (A) AP033_20068 PF01842 ACT domain AP033_20068 PF00696 Amino acid kinase family AP033_20068 PF13840 ACT domain AP033_20069 PF02599 Global regulator protein family AP033_20078 PF04277 Oxaloacetate decarboxylase, gamma chain AP033_20079 PF02436 Conserved carboxylase domain AP033_20079 PF00682 HMGL-like AP033_20079 PF00364 Biotin-requiring enzyme AP033_20080 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AP033_20082 PF09335 SNARE associated Golgi protein AP033_20083 PF00675 Insulinase (Peptidase family M16) AP033_20083 PF05193 Peptidase M16 inactive domain AP033_20084 PF04262 Glutamate-cysteine ligase AP033_20085 PF02664 S-Ribosylhomocysteinase (LuxS) AP033_20086 PF03471 Transporter associated domain AP033_20086 PF01595 Cyclin M transmembrane N-terminal domain AP033_20086 PF00571 CBS domain AP033_20087 PF01578 Cytochrome C assembly protein AP033_20089 PF02881 SRP54-type protein, helical bundle domain AP033_20089 PF02978 Signal peptide binding domain AP033_20089 PF00448 SRP54-type protein, GTPase domain AP033_20090 PF00886 Ribosomal protein S16 AP033_20091 PF01782 RimM N-terminal domain AP033_20091 PF05239 PRC-barrel domain AP033_20092 PF01746 tRNA (Guanine-1)-methyltransferase AP033_20093 PF01245 Ribosomal protein L19 AP033_20094 PF13180 PDZ domain AP033_20095 PF00595 PDZ domain AP033_20097 PF03969 AFG1-like ATPase AP033_20098 PF00572 Ribosomal protein L13 AP033_20099 PF00380 Ribosomal protein S9/S16 AP033_20100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AP033_20100 PF00355 Rieske [2Fe-2S] domain AP033_20101 PF00033 Cytochrome b/b6/petB AP033_20101 PF00032 Cytochrome b(C-terminal)/b6/petD AP033_20102 PF02167 Cytochrome C1 family AP033_20103 PF02798 Glutathione S-transferase, N-terminal domain AP033_20103 PF00043 Glutathione S-transferase, C-terminal domain AP033_20104 PF04386 Stringent starvation protein B AP033_20105 PF04972 BON domain AP033_20106 PF13580 SIS domain AP033_20107 PF02021 Uncharacterised protein family UPF0102 AP033_20108 PF04348 LppC putative lipoprotein AP033_20109 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP033_20110 PF00440 Bacterial regulatory proteins, tetR family AP033_20111 PF00156 Phosphoribosyl transferase domain AP033_20112 PF00484 Carbonic anhydrase AP033_20113 PF01740 STAS domain AP033_20113 PF00916 Sulfate permease family AP033_20114 PF00005 ABC transporter AP033_20115 PF01061 ABC-2 type transporter AP033_20116 PF02569 Pantoate-beta-alanine ligase AP033_20117 PF02548 Ketopantoate hydroxymethyltransferase AP033_20118 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AP033_20119 PF12627 Probable RNA and SrmB- binding site of polymerase A AP033_20119 PF12626 Polymerase A arginine-rich C-terminus AP033_20119 PF01743 Poly A polymerase head domain AP033_20120 PF00749 tRNA synthetases class I (E and Q), catalytic domain AP033_20121 PF01258 Prokaryotic dksA/traR C4-type zinc finger AP033_20122 PF17746 SfsA N-terminal OB domain AP033_20122 PF03749 Sugar fermentation stimulation protein RE domain AP033_20124 PF08482 ATP-dependent helicase C-terminal AP033_20124 PF00271 Helicase conserved C-terminal domain AP033_20124 PF04408 Helicase associated domain (HA2) AP033_20124 PF00270 DEAD/DEAH box helicase AP033_20125 PF00905 Penicillin binding protein transpeptidase domain AP033_20125 PF00912 Transglycosylase AP033_20125 PF14814 Bifunctional transglycosylase second domain AP033_20126 PF01734 Patatin-like phospholipase AP033_20127 PF06434 Aconitate hydratase 2 N-terminus AP033_20127 PF00330 Aconitase family (aconitate hydratase) AP033_20127 PF11791 Aconitate B N-terminal domain AP033_20128 PF06062 Uncharacterised protein family (UPF0231) AP033_20129 PF00543 Nitrogen regulatory protein P-II AP033_20130 PF00909 Ammonium Transporter Family AP033_20131 PF13416 Bacterial extracellular solute-binding protein AP033_20133 PF00005 ABC transporter AP033_20133 PF08402 TOBE domain AP033_20134 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP033_20134 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP033_20134 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP033_20134 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP033_20135 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AP033_20135 PF06165 Glycosyltransferase family 36 AP033_20136 PF00728 Glycosyl hydrolase family 20, catalytic domain AP033_20136 PF02838 Glycosyl hydrolase family 20, domain 2 AP033_20137 PF01869 BadF/BadG/BcrA/BcrD ATPase family AP033_20139 PF00005 ABC transporter AP033_20139 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_20140 PF00005 ABC transporter AP033_20140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_20141 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20141 PF12911 N-terminal TM domain of oligopeptide transport permease C AP033_20142 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20143 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP033_20144 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20144 PF00072 Response regulator receiver domain AP033_20144 PF00512 His Kinase A (phospho-acceptor) domain AP033_20144 PF09308 LuxQ, periplasmic AP033_20145 PF08468 Methyltransferase small domain N-terminal AP033_20145 PF05175 Methyltransferase small domain AP033_20146 PF01594 AI-2E family transporter AP033_20148 PF00202 Aminotransferase class-III AP033_20149 PF01521 Iron-sulphur cluster biosynthesis AP033_20151 PF00873 AcrB/AcrD/AcrF family AP033_20152 PF04225 Opacity-associated protein A LysM-like domain AP033_20152 PF01551 Peptidase family M23 AP033_20153 PF01479 S4 domain AP033_20153 PF00579 tRNA synthetases class I (W and Y) AP033_20154 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AP033_20155 PF13609 Gram-negative porin AP033_20156 PF01272 Transcription elongation factor, GreA/GreB, C-term AP033_20156 PF03449 Transcription elongation factor, N-terminal AP033_20157 PF01985 CRS1 / YhbY (CRM) domain AP033_20158 PF01728 FtsJ-like methyltransferase AP033_20159 PF17862 AAA+ lid domain AP033_20159 PF06480 FtsH Extracellular AP033_20159 PF01434 Peptidase family M41 AP033_20159 PF00004 ATPase family associated with various cellular activities (AAA) AP033_20160 PF00809 Pterin binding enzyme AP033_20161 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP033_20161 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP033_20161 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP033_20161 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP033_20163 PF03840 Preprotein translocase SecG subunit AP033_20166 PF17384 RimP C-terminal SH3 domain AP033_20166 PF02576 RimP N-terminal domain AP033_20167 PF08529 NusA N-terminal domain AP033_20167 PF13184 NusA-like KH domain AP033_20167 PF00575 S1 RNA binding domain AP033_20168 PF00575 S1 RNA binding domain AP033_20168 PF08529 NusA N-terminal domain AP033_20168 PF13184 NusA-like KH domain AP033_20169 PF04760 Translation initiation factor IF-2, N-terminal region AP033_20169 PF00009 Elongation factor Tu GTP binding domain AP033_20169 PF11987 Translation-initiation factor 2 AP033_20169 PF08364 Bacterial translation initiation factor IF-2 associated region AP033_20170 PF02033 Ribosome-binding factor A AP033_20171 PF09157 Pseudouridine synthase II TruB, C-terminal AP033_20171 PF01509 TruB family pseudouridylate synthase (N terminal domain) AP033_20171 PF16198 tRNA pseudouridylate synthase B C-terminal domain AP033_20172 PF00312 Ribosomal protein S15 AP033_20173 PF00575 S1 RNA binding domain AP033_20173 PF03725 3' exoribonuclease family, domain 2 AP033_20173 PF00013 KH domain AP033_20173 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AP033_20173 PF01138 3' exoribonuclease family, domain 1 AP033_20174 PF07719 Tetratricopeptide repeat AP033_20174 PF13181 Tetratricopeptide repeat AP033_20179 PF03707 Bacterial signalling protein N terminal repeat AP033_20179 PF00563 EAL domain AP033_20179 PF00990 Diguanylate cyclase, GGDEF domain AP033_20181 PF13508 Acetyltransferase (GNAT) domain AP033_20184 PF03707 Bacterial signalling protein N terminal repeat AP033_20184 PF00563 EAL domain AP033_20184 PF00990 Diguanylate cyclase, GGDEF domain AP033_20185 PF16658 Class II release factor RF3, C-terminal domain AP033_20185 PF03144 Elongation factor Tu domain 2 AP033_20185 PF00009 Elongation factor Tu GTP binding domain AP033_20186 PF00270 DEAD/DEAH box helicase AP033_20186 PF00271 Helicase conserved C-terminal domain AP033_20187 PF05175 Methyltransferase small domain AP033_20188 PF05525 Branched-chain amino acid transport protein AP033_20189 PF03462 PCRF domain AP033_20189 PF00472 RF-1 domain AP033_20190 PF01336 OB-fold nucleic acid binding domain AP033_20190 PF00152 tRNA synthetases class II (D, K and N) AP033_20191 PF00158 Sigma-54 interaction domain AP033_20191 PF00072 Response regulator receiver domain AP033_20191 PF02954 Bacterial regulatory protein, Fis family AP033_20193 PF00248 Aldo/keto reductase family AP033_20194 PF02976 DNA mismatch repair enzyme MutH AP033_20195 PF00293 NUDIX domain AP033_20196 PF01590 GAF domain AP033_20196 PF05524 PEP-utilising enzyme, N-terminal AP033_20196 PF02896 PEP-utilising enzyme, TIM barrel domain AP033_20196 PF00391 PEP-utilising enzyme, mobile domain AP033_20197 PF01925 Sulfite exporter TauE/SafE AP033_20198 PF01790 Prolipoprotein diacylglyceryl transferase AP033_20199 PF00303 Thymidylate synthase AP033_20200 PF02690 Na+/Pi-cotransporter AP033_20201 PF03466 LysR substrate binding domain AP033_20201 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20202 PF01022 Bacterial regulatory protein, arsR family AP033_20203 PF01649 Ribosomal protein S20 AP033_20204 PF03023 Lipid II flippase MurJ AP033_20205 PF01687 Riboflavin kinase AP033_20205 PF06574 FAD synthetase AP033_20206 PF08264 Anticodon-binding domain of tRNA AP033_20206 PF06827 Zinc finger found in FPG and IleRS AP033_20206 PF00133 tRNA synthetases class I (I, L, M and V) AP033_20207 PF01252 Signal peptidase (SPase) II AP033_20208 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP033_20209 PF02401 LytB protein AP033_20210 PF02554 Carbon starvation protein CstA AP033_20213 PF13580 SIS domain AP033_20214 PF03702 Anhydro-N-acetylmuramic acid kinase AP033_20215 PF00933 Glycosyl hydrolase family 3 N terminal domain AP033_20216 PF04397 LytTr DNA-binding domain AP033_20216 PF00072 Response regulator receiver domain AP033_20217 PF06580 Histidine kinase AP033_20217 PF07694 5TMR of 5TMR-LYT AP033_20218 PF00793 DAHP synthetase I family AP033_20219 PF01817 Chorismate mutase type II AP033_20219 PF02153 Prephenate dehydrogenase AP033_20220 PF07238 PilZ domain AP033_20221 PF00005 ABC transporter AP033_20221 PF12848 ABC transporter AP033_20222 PF01464 Transglycosylase SLT domain AP033_20222 PF14718 Soluble lytic murein transglycosylase L domain AP033_20223 PF01371 Trp repressor protein AP033_20224 PF01931 Protein of unknown function DUF84 AP033_20225 PF00563 EAL domain AP033_20225 PF00990 Diguanylate cyclase, GGDEF domain AP033_20226 PF13416 Bacterial extracellular solute-binding protein AP033_20227 PF00800 Prephenate dehydratase AP033_20227 PF01817 Chorismate mutase type II AP033_20228 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AP033_20229 PF13525 Outer membrane lipoprotein AP033_20230 PF00849 RNA pseudouridylate synthase AP033_20230 PF01479 S4 domain AP033_20232 PF02861 Clp amino terminal domain, pathogenicity island component AP033_20232 PF17871 AAA lid domain AP033_20232 PF07724 AAA domain (Cdc48 subfamily) AP033_20232 PF00004 ATPase family associated with various cellular activities (AAA) AP033_20232 PF10431 C-terminal, D2-small domain, of ClpB protein AP033_20239 PF00881 Nitroreductase family AP033_20240 PF00037 4Fe-4S binding domain AP033_20242 PF04381 Putative exonuclease, RdgC AP033_20243 PF00486 Transcriptional regulatory protein, C terminal AP033_20243 PF00072 Response regulator receiver domain AP033_20244 PF00989 PAS fold AP033_20244 PF11808 Phosphate regulon sensor protein PhoR AP033_20244 PF00512 His Kinase A (phospho-acceptor) domain AP033_20244 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20245 PF12849 PBP superfamily domain AP033_20246 PF02541 Ppx/GppA phosphatase family AP033_20247 PF17941 Polyphosphate kinase C-terminal domain 1 AP033_20247 PF02503 Polyphosphate kinase middle domain AP033_20247 PF13090 Polyphosphate kinase C-terminal domain 2 AP033_20247 PF13089 Polyphosphate kinase N-terminal domain AP033_20248 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20249 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20250 PF00005 ABC transporter AP033_20251 PF01895 PhoU domain AP033_20252 PF03976 Polyphosphate kinase 2 (PPK2) AP033_20253 PF03932 CutC family AP033_20254 PF00578 AhpC/TSA family AP033_20254 PF10417 C-terminal domain of 1-Cys peroxiredoxin AP033_20255 PF03466 LysR substrate binding domain AP033_20255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20256 PF01274 Malate synthase AP033_20257 PF00463 Isocitrate lyase family AP033_20258 PF00571 CBS domain AP033_20259 PF02547 Queuosine biosynthesis protein AP033_20260 PF01702 Queuine tRNA-ribosyltransferase AP033_20261 PF02699 Preprotein translocase subunit AP033_20262 PF07549 SecD/SecF GG Motif AP033_20262 PF02355 Protein export membrane protein AP033_20262 PF13721 SecD export protein N-terminal TM region AP033_20263 PF07549 SecD/SecF GG Motif AP033_20263 PF02355 Protein export membrane protein AP033_20264 PF00459 Inositol monophosphatase family AP033_20265 PF00588 SpoU rRNA Methylase family AP033_20266 PF02082 Transcriptional regulator AP033_20267 PF00266 Aminotransferase class-V AP033_20268 PF01592 NifU-like N terminal domain AP033_20269 PF01521 Iron-sulphur cluster biosynthesis AP033_20270 PF07743 HSCB C-terminal oligomerisation domain AP033_20270 PF00226 DnaJ domain AP033_20271 PF00012 Hsp70 protein AP033_20272 PF00111 2Fe-2S iron-sulfur cluster binding domain AP033_20273 PF04384 Iron-sulphur cluster assembly AP033_20274 PF12404 Peptidase AP033_20274 PF00883 Cytosol aminopeptidase family, catalytic domain AP033_20275 PF00334 Nucleoside diphosphate kinase AP033_20276 PF04055 Radical SAM superfamily AP033_20277 PF13464 Domain of unknown function (DUF4115) AP033_20278 PF04551 GcpE protein AP033_20279 PF13393 Histidyl-tRNA synthetase AP033_20279 PF03129 Anticodon binding domain AP033_20280 PF09976 Tetratricopeptide repeat-like domain AP033_20281 PF13360 PQQ-like domain AP033_20282 PF01926 50S ribosome-binding GTPase AP033_20282 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AP033_20285 PF02601 Exonuclease VII, large subunit AP033_20285 PF13742 OB-fold nucleic acid binding domain AP033_20286 PF00571 CBS domain AP033_20286 PF00478 IMP dehydrogenase / GMP reductase domain AP033_20287 PF00958 GMP synthase C terminal domain AP033_20287 PF02540 NAD synthase AP033_20287 PF00117 Glutamine amidotransferase class-I AP033_20288 PF00704 Glycosyl hydrolases family 18 AP033_20288 PF06483 Chitinase C AP033_20289 PF01184 GPR1/FUN34/yaaH family AP033_20290 PF00550 Phosphopantetheine attachment site AP033_20290 PF00857 Isochorismatase family AP033_20291 PF00501 AMP-binding enzyme AP033_20291 PF13193 AMP-binding enzyme C-terminal domain AP033_20292 PF00425 chorismate binding enzyme AP033_20295 PF01497 Periplasmic binding protein AP033_20296 PF01032 FecCD transport family AP033_20297 PF01032 FecCD transport family AP033_20298 PF00005 ABC transporter AP033_20299 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AP033_20299 PF01648 4'-phosphopantetheinyl transferase superfamily AP033_20300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20300 PF03466 LysR substrate binding domain AP033_20301 PF14863 Alkyl sulfatase dimerisation AP033_20301 PF14864 Alkyl sulfatase C-terminal AP033_20301 PF00753 Metallo-beta-lactamase superfamily AP033_20302 PF01235 Sodium:alanine symporter family AP033_20303 PF01266 FAD dependent oxidoreductase AP033_20304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20304 PF03466 LysR substrate binding domain AP033_20307 PF12431 Transcriptional regulator AP033_20307 PF00072 Response regulator receiver domain AP033_20308 PF17203 Single cache domain 3 AP033_20308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20309 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AP033_20310 PF00364 Biotin-requiring enzyme AP033_20310 PF00682 HMGL-like AP033_20310 PF02436 Conserved carboxylase domain AP033_20311 PF04277 Oxaloacetate decarboxylase, gamma chain AP033_20312 PF03390 2-hydroxycarboxylate transporter family AP033_20313 PF08218 Citrate lyase ligase C-terminal domain AP033_20314 PF06857 Malonate decarboxylase delta subunit (MdcD) AP033_20315 PF03328 HpcH/HpaI aldolase/citrate lyase family AP033_20316 PF04223 Citrate lyase, alpha subunit (CitF) AP033_20317 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase AP033_20318 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AP033_20320 PF08032 RNA 2'-O ribose methyltransferase substrate binding AP033_20320 PF00588 SpoU rRNA Methylase family AP033_20321 PF11953 Domain of unknown function (DUF3470) AP033_20321 PF00037 4Fe-4S binding domain AP033_20331 PF05598 Transposase domain (DUF772) AP033_20331 PF01609 Transposase DDE domain AP033_20343 PF00171 Aldehyde dehydrogenase family AP033_20344 PF00041 Fibronectin type III domain AP033_20344 PF12561 ToxR activated gene A lipoprotein domain AP033_20347 PF08534 Redoxin AP033_20348 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20349 PF00486 Transcriptional regulatory protein, C terminal AP033_20351 PF05946 Toxin-coregulated pilus subunit TcpA AP033_20351 PF07963 Prokaryotic N-terminal methylation motif AP033_20353 PF10671 Toxin co-regulated pilus biosynthesis protein Q AP033_20357 PF17456 Toxin-coregulated pilus protein S AP033_20358 PF00437 Type II/IV secretion system protein AP033_20359 PF00482 Type II secretion system (T2SS), protein F AP033_20360 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F AP033_20361 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F AP033_20362 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family AP033_20363 PF01478 Type IV leader peptidase family AP033_20363 PF06750 Bacterial Peptidase A24 N-terminal domain AP033_20364 PF02743 Cache domain AP033_20364 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20364 PF00672 HAMP domain AP033_20368 PF04225 Opacity-associated protein A LysM-like domain AP033_20368 PF01551 Peptidase family M23 AP033_20370 PF13402 Peptidase M60, enhancin and enhancin-like AP033_20370 PF13322 Domain of unknown function (DUF4092) AP033_20370 PF17291 N-terminal domain of M60-like peptidases AP033_20371 PF00589 Phage integrase family AP033_20371 PF13356 Arm DNA-binding domain AP033_20372 PF13356 Arm DNA-binding domain AP033_20372 PF00589 Phage integrase family AP033_20374 PF01668 SmpB protein AP033_20375 PF03364 Polyketide cyclase / dehydrase and lipid transport AP033_20376 PF03658 RnfH family Ubiquitin AP033_20377 PF04355 SmpA / OmlA family AP033_20378 PF02463 RecF/RecN/SMC N terminal domain AP033_20379 PF01513 ATP-NAD kinase AP033_20380 PF01025 GrpE AP033_20381 PF00012 Hsp70 protein AP033_20382 PF01556 DnaJ C terminal domain AP033_20382 PF00226 DnaJ domain AP033_20382 PF00684 DnaJ central domain AP033_20383 PF07963 Prokaryotic N-terminal methylation motif AP033_20383 PF00114 Pilin (bacterial filament) AP033_20388 PF03806 AbgT putative transporter family AP033_20389 PF14437 MafB19-like deaminase AP033_20391 PF01464 Transglycosylase SLT domain AP033_20391 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_20392 PF02769 AIR synthase related protein, C-terminal domain AP033_20392 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AP033_20392 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AP033_20393 PF01797 Transposase IS200 like AP033_20395 PF06786 Uncharacterised protein family (UPF0253) AP033_20397 PF04073 Aminoacyl-tRNA editing domain AP033_20397 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP033_20397 PF03129 Anticodon binding domain AP033_20398 PF18389 TrmO C-terminal domain AP033_20398 PF01980 tRNA-methyltransferase O AP033_20399 PF01197 Ribosomal protein L31 AP033_20400 PF00444 Ribosomal protein L36 AP033_20401 PF03806 AbgT putative transporter family AP033_20402 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AP033_20404 PF13302 Acetyltransferase (GNAT) domain AP033_20407 PF04287 tRNA pseudouridine synthase C AP033_20408 PF00849 RNA pseudouridylate synthase AP033_20409 PF02780 Transketolase, C-terminal domain AP033_20409 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AP033_20409 PF02779 Transketolase, pyrimidine binding domain AP033_20410 PF00348 Polyprenyl synthetase AP033_20411 PF02609 Exonuclease VII small subunit AP033_20412 PF01618 MotA/TolQ/ExbB proton channel family AP033_20413 PF13677 Membrane MotB of proton-channel complex MotA/MotB AP033_20413 PF00691 OmpA family AP033_20414 PF02568 Thiamine biosynthesis protein (ThiI) AP033_20414 PF02926 THUMP domain AP033_20415 PF03466 LysR substrate binding domain AP033_20415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20416 PF04241 Protein of unknown function (DUF423) AP033_20417 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AP033_20417 PF01367 5'-3' exonuclease, C-terminal SAM fold AP033_20418 PF11892 Domain of unknown function (DUF3412) AP033_20418 PF03641 Possible lysine decarboxylase AP033_20418 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AP033_20419 PF00990 Diguanylate cyclase, GGDEF domain AP033_20421 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AP033_20421 PF14489 QueF-like protein AP033_20422 PF07348 Syd protein (SUKH-2) AP033_20423 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AP033_20424 PF03180 NLPA lipoprotein AP033_20425 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20426 PF00005 ABC transporter AP033_20426 PF09383 NIL domain AP033_20428 PF00356 Bacterial regulatory proteins, lacI family AP033_20429 PF00367 phosphotransferase system, EIIB AP033_20429 PF02378 Phosphotransferase system, EIIC AP033_20430 PF00128 Alpha amylase, catalytic domain AP033_20430 PF16657 Maltogenic Amylase, C-terminal domain AP033_20435 PF13533 Biotin-lipoyl like AP033_20436 PF00873 AcrB/AcrD/AcrF family AP033_20437 PF01451 Low molecular weight phosphotyrosine protein phosphatase AP033_20438 PF02350 UDP-N-acetylglucosamine 2-epimerase AP033_20439 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AP033_20439 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AP033_20439 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AP033_20440 PF12464 Maltose acetyltransferase AP033_20440 PF14602 Hexapeptide repeat of succinyl-transferase AP033_20444 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_20446 PF00534 Glycosyl transferases group 1 AP033_20446 PF00862 Sucrose synthase AP033_20448 PF03808 Glycosyl transferase WecB/TagA/CpsF family AP033_20451 PF12561 ToxR activated gene A lipoprotein domain AP033_20451 PF17945 Beta/Gamma crystallin AP033_20454 PF02397 Bacterial sugar transferase AP033_20456 PF02563 Polysaccharide biosynthesis/export protein AP033_20456 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AP033_20456 PF10531 SLBB domain AP033_20457 PF02706 Chain length determinant protein AP033_20457 PF13807 G-rich domain on putative tyrosine kinase AP033_20457 PF13614 AAA domain AP033_20461 PF00464 Serine hydroxymethyltransferase AP033_20463 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AP033_20463 PF04055 Radical SAM superfamily AP033_20464 PF03099 Biotin/lipoate A/B protein ligase family AP033_20465 PF04359 Protein of unknown function (DUF493) AP033_20466 PF00768 D-alanyl-D-alanine carboxypeptidase AP033_20466 PF07943 Penicillin-binding protein 5, C-terminal domain AP033_20467 PF05036 Sporulation related domain AP033_20467 PF03330 Lytic transglycolase AP033_20468 PF01098 Cell cycle protein AP033_20469 PF03717 Penicillin-binding Protein dimerisation domain AP033_20469 PF00905 Penicillin binding protein transpeptidase domain AP033_20470 PF02590 Predicted SPOUT methyltransferase AP033_20472 PF06144 DNA polymerase III, delta subunit AP033_20472 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AP033_20473 PF04390 Lipopolysaccharide-assembly AP033_20474 PF00133 tRNA synthetases class I (I, L, M and V) AP033_20474 PF08264 Anticodon-binding domain of tRNA AP033_20474 PF13603 Leucyl-tRNA synthetase, Domain 2 AP033_20475 PF07295 Zinc-ribbon containing domain AP033_20476 PF00795 Carbon-nitrogen hydrolase AP033_20477 PF03471 Transporter associated domain AP033_20477 PF00571 CBS domain AP033_20478 PF02130 Uncharacterized protein family UPF0054 AP033_20479 PF02562 PhoH-like protein AP033_20480 PF00919 Uncharacterized protein family UPF0004 AP033_20480 PF01938 TRAM domain AP033_20480 PF04055 Radical SAM superfamily AP033_20481 PF01494 FAD binding domain AP033_20482 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AP033_20483 PF05524 PEP-utilising enzyme, N-terminal AP033_20483 PF00391 PEP-utilising enzyme, mobile domain AP033_20483 PF02896 PEP-utilising enzyme, TIM barrel domain AP033_20484 PF00381 PTS HPr component phosphorylation site AP033_20485 PF00291 Pyridoxal-phosphate dependent enzyme AP033_20487 PF04354 ZipA, C-terminal FtsZ-binding domain AP033_20488 PF12826 Helix-hairpin-helix motif AP033_20488 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AP033_20488 PF03120 NAD-dependent DNA ligase OB-fold domain AP033_20488 PF00533 BRCA1 C Terminus (BRCT) domain AP033_20488 PF01653 NAD-dependent DNA ligase adenylation domain AP033_20489 PF13609 Gram-negative porin AP033_20491 PF13411 MerR HTH family regulatory protein AP033_20492 PF01957 NfeD-like C-terminal, partner-binding AP033_20493 PF16200 C-terminal region of band_7 AP033_20493 PF01145 SPFH domain / Band 7 family AP033_20494 PF00085 Thioredoxin AP033_20495 PF01609 Transposase DDE domain AP033_20495 PF05598 Transposase domain (DUF772) AP033_20496 PF00106 short chain dehydrogenase AP033_20497 PF08338 Domain of unknown function (DUF1731) AP033_20497 PF01370 NAD dependent epimerase/dehydratase family AP033_20498 PF12850 Calcineurin-like phosphoesterase superfamily domain AP033_20500 PF17323 Trans-membrane regulatory protein ToxS AP033_20501 PF00486 Transcriptional regulatory protein, C terminal AP033_20502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20502 PF00183 Hsp90 protein AP033_20503 PF05191 Adenylate kinase, active site lid AP033_20504 PF00762 Ferrochelatase AP033_20505 PF00854 POT family AP033_20506 PF02357 Transcription termination factor nusG AP033_20507 PF13537 Glutamine amidotransferase domain AP033_20507 PF00733 Asparagine synthase AP033_20508 PF02254 TrkA-N domain AP033_20508 PF00999 Sodium/hydrogen exchanger family AP033_20509 PF00480 ROK family AP033_20509 PF01047 MarR family AP033_20510 PF01979 Amidohydrolase family AP033_20511 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AP033_20511 PF02378 Phosphotransferase system, EIIC AP033_20511 PF00367 phosphotransferase system, EIIB AP033_20512 PF00749 tRNA synthetases class I (E and Q), catalytic domain AP033_20512 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AP033_20514 PF01416 tRNA pseudouridine synthase AP033_20515 PF17848 Acetyl-coA carboxylase zinc finger domain AP033_20515 PF01039 Carboxyl transferase domain AP033_20516 PF02875 Mur ligase family, glutamate ligase domain AP033_20516 PF08245 Mur ligase middle domain AP033_20517 PF05036 Sporulation related domain AP033_20518 PF02674 Colicin V production protein AP033_20519 PF00156 Phosphoribosyl transferase domain AP033_20520 PF03553 Na+/H+ antiporter family AP033_20520 PF13726 Na+-H+ antiporter family AP033_20521 PF00929 Exonuclease AP033_20522 PF00691 OmpA family AP033_20522 PF18393 MotY N-terminal domain AP033_20523 PF10952 Protein of unknown function (DUF2753) AP033_20524 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_20525 PF00633 Helix-hairpin-helix motif AP033_20525 PF10576 Iron-sulfur binding domain of endonuclease III AP033_20525 PF00730 HhH-GPD superfamily base excision DNA repair protein AP033_20526 PF02508 Rnf-Nqr subunit, membrane protein AP033_20527 PF04205 FMN-binding domain AP033_20528 PF03116 NQR2, RnfD, RnfE family AP033_20529 PF12838 4Fe-4S dicluster domain AP033_20529 PF13375 RnfC Barrel sandwich hybrid domain AP033_20529 PF10531 SLBB domain AP033_20529 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AP033_20530 PF04060 Putative Fe-S cluster AP033_20531 PF02508 Rnf-Nqr subunit, membrane protein AP033_20533 PF00271 Helicase conserved C-terminal domain AP033_20533 PF04851 Type III restriction enzyme, res subunit AP033_20533 PF17757 UvrB interaction domain AP033_20533 PF02151 UvrB/uvrC motif AP033_20533 PF12344 Ultra-violet resistance protein B AP033_20534 PF02954 Bacterial regulatory protein, Fis family AP033_20534 PF00072 Response regulator receiver domain AP033_20534 PF00158 Sigma-54 interaction domain AP033_20535 PF01627 Hpt domain AP033_20536 PF01933 Uncharacterised protein family UPF0052 AP033_20537 PF04055 Radical SAM superfamily AP033_20537 PF06463 Molybdenum Cofactor Synthesis C AP033_20538 PF00994 Probable molybdopterin binding domain AP033_20539 PF01967 MoaC family AP033_20540 PF02597 ThiS family AP033_20541 PF02391 MoaE protein AP033_20542 PF07694 5TMR of 5TMR-LYT AP033_20542 PF00990 Diguanylate cyclase, GGDEF domain AP033_20543 PF03061 Thioesterase superfamily AP033_20543 PF07085 DRTGG domain AP033_20543 PF00571 CBS domain AP033_20543 PF00392 Bacterial regulatory proteins, gntR family AP033_20544 PF00403 Heavy-metal-associated domain AP033_20545 PF01048 Phosphorylase superfamily AP033_20546 PF01048 Phosphorylase superfamily AP033_20548 PF09334 tRNA synthetases class I (M) AP033_20548 PF01588 Putative tRNA binding domain AP033_20549 PF10609 NUBPL iron-transfer P-loop NTPase AP033_20550 PF00485 Phosphoribulokinase / Uridine kinase family AP033_20551 PF05170 AsmA family AP033_20552 PF12557 Cob(I)alamin adenosyltransferase N terminal AP033_20552 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AP033_20553 PF01451 Low molecular weight phosphotyrosine protein phosphatase AP033_20554 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AP033_20555 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AP033_20557 PF08281 Sigma-70, region 4 AP033_20557 PF04542 Sigma-70 region 2 AP033_20558 PF00108 Thiolase, N-terminal domain AP033_20558 PF02803 Thiolase, C-terminal domain AP033_20559 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AP033_20559 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AP033_20559 PF00378 Enoyl-CoA hydratase/isomerase AP033_20560 PF00881 Nitroreductase family AP033_20561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20561 PF03466 LysR substrate binding domain AP033_20562 PF00072 Response regulator receiver domain AP033_20564 PF04304 Protein of unknown function (DUF454) AP033_20565 PF00156 Phosphoribosyl transferase domain AP033_20566 PF12169 DNA polymerase III subunits gamma and tau domain III AP033_20566 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AP033_20566 PF12170 DNA polymerase III tau subunit V interacting with alpha AP033_20567 PF02575 YbaB/EbfC DNA-binding family AP033_20568 PF13662 Toprim domain AP033_20568 PF02132 RecR protein AP033_20569 PF03692 Putative zinc- or iron-chelating domain AP033_20570 PF03692 Putative zinc- or iron-chelating domain AP033_20571 PF00106 short chain dehydrogenase AP033_20572 PF01343 Peptidase family S49 AP033_20572 PF08496 Peptidase family S49 N-terminal AP033_20573 PF00291 Pyridoxal-phosphate dependent enzyme AP033_20574 PF01037 Lrp/AsnC ligand binding domain AP033_20574 PF13404 AsnC-type helix-turn-helix domain AP033_20577 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AP033_20579 PF00990 Diguanylate cyclase, GGDEF domain AP033_20579 PF08448 PAS fold AP033_20580 PF01022 Bacterial regulatory protein, arsR family AP033_20581 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AP033_20581 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_20584 PF06483 Chitinase C AP033_20584 PF00704 Glycosyl hydrolases family 18 AP033_20586 PF01161 Phosphatidylethanolamine-binding protein AP033_20587 PF01161 Phosphatidylethanolamine-binding protein AP033_20590 PF01300 Telomere recombination AP033_20590 PF03481 Putative GTP-binding controlling metal-binding AP033_20593 PF00072 Response regulator receiver domain AP033_20595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20595 PF00512 His Kinase A (phospho-acceptor) domain AP033_20595 PF00989 PAS fold AP033_20595 PF13426 PAS domain AP033_20595 PF13188 PAS domain AP033_20596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20596 PF00512 His Kinase A (phospho-acceptor) domain AP033_20597 PF00563 EAL domain AP033_20597 PF03707 Bacterial signalling protein N terminal repeat AP033_20597 PF13188 PAS domain AP033_20597 PF00990 Diguanylate cyclase, GGDEF domain AP033_20598 PF00158 Sigma-54 interaction domain AP033_20598 PF02954 Bacterial regulatory protein, Fis family AP033_20598 PF00072 Response regulator receiver domain AP033_20599 PF00072 Response regulator receiver domain AP033_20599 PF08448 PAS fold AP033_20599 PF00512 His Kinase A (phospho-acceptor) domain AP033_20599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20599 PF13188 PAS domain AP033_20601 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP033_20602 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20603 PF12911 N-terminal TM domain of oligopeptide transport permease C AP033_20603 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20604 PF00005 ABC transporter AP033_20604 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_20605 PF00005 ABC transporter AP033_20605 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_20606 PF13409 Glutathione S-transferase, N-terminal domain AP033_20607 PF01515 Phosphate acetyl/butaryl transferase AP033_20607 PF07085 DRTGG domain AP033_20608 PF00871 Acetokinase family AP033_20609 PF04217 Protein of unknown function, DUF412 AP033_20610 PF09905 DNA-binding protein VF530 AP033_20612 PF02653 Branched-chain amino acid transport system / permease component AP033_20613 PF00005 ABC transporter AP033_20614 PF00990 Diguanylate cyclase, GGDEF domain AP033_20615 PF01207 Dihydrouridine synthase (Dus) AP033_20616 PF07517 SecA DEAD-like domain AP033_20616 PF02810 SEC-C motif AP033_20616 PF01043 SecA preprotein cross-linking domain AP033_20616 PF07516 SecA Wing and Scaffold domain AP033_20617 PF03548 Outer membrane lipoprotein carrier protein LolA AP033_20618 PF12002 MgsA AAA+ ATPase C terminal AP033_20618 PF00004 ATPase family associated with various cellular activities (AAA) AP033_20618 PF16193 AAA C-terminal domain AP033_20619 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AP033_20619 PF02403 Seryl-tRNA synthetase N-terminal domain AP033_20620 PF00202 Aminotransferase class-III AP033_20621 PF06968 Biotin and Thiamin Synthesis associated domain AP033_20621 PF04055 Radical SAM superfamily AP033_20622 PF00155 Aminotransferase class I and II AP033_20623 PF08241 Methyltransferase domain AP033_20626 PF01435 Peptidase family M48 AP033_20628 PF00106 short chain dehydrogenase AP033_20633 PF16036 Chalcone isomerase-like AP033_20635 PF08328 Adenylosuccinate lyase C-terminal AP033_20635 PF00206 Lyase AP033_20636 PF04356 Protein of unknown function (DUF489) AP033_20638 PF00294 pfkB family carbohydrate kinase AP033_20639 PF00816 H-NS histone family AP033_20640 PF03553 Na+/H+ antiporter family AP033_20641 PF08029 HisG, C-terminal domain AP033_20641 PF01634 ATP phosphoribosyltransferase AP033_20642 PF00815 Histidinol dehydrogenase AP033_20643 PF00155 Aminotransferase class I and II AP033_20644 PF00475 Imidazoleglycerol-phosphate dehydratase AP033_20644 PF08645 Polynucleotide kinase 3 phosphatase AP033_20645 PF00117 Glutamine amidotransferase class-I AP033_20646 PF00977 Histidine biosynthesis protein AP033_20647 PF00977 Histidine biosynthesis protein AP033_20648 PF01502 Phosphoribosyl-AMP cyclohydrolase AP033_20648 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AP033_20649 PF00849 RNA pseudouridylate synthase AP033_20650 PF03971 Monomeric isocitrate dehydrogenase AP033_20651 PF00313 'Cold-shock' DNA-binding domain AP033_20652 PF02617 ATP-dependent Clp protease adaptor protein ClpS AP033_20653 PF00004 ATPase family associated with various cellular activities (AAA) AP033_20653 PF07724 AAA domain (Cdc48 subfamily) AP033_20653 PF10431 C-terminal, D2-small domain, of ClpB protein AP033_20653 PF02861 Clp amino terminal domain, pathogenicity island component AP033_20653 PF17871 AAA lid domain AP033_20654 PF06826 Predicted Permease Membrane Region AP033_20654 PF02080 TrkA-C domain AP033_20655 PF00462 Glutaredoxin AP033_20656 PF00465 Iron-containing alcohol dehydrogenase AP033_20656 PF00171 Aldehyde dehydrogenase family AP033_20657 PF01380 SIS domain AP033_20657 PF01418 Helix-turn-helix domain, rpiR family AP033_20658 PF00282 Pyridoxal-dependent decarboxylase conserved domain AP033_20660 PF03956 Lysine exporter LysO AP033_20662 PF04993 TfoX N-terminal domain AP033_20662 PF04994 TfoX C-terminal domain AP033_20665 PF00989 PAS fold AP033_20665 PF00512 His Kinase A (phospho-acceptor) domain AP033_20665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20667 PF00266 Aminotransferase class-V AP033_20670 PF08443 RimK-like ATP-grasp domain AP033_20670 PF18030 RimK PreATP-grasp domain AP033_20671 PF08003 Protein of unknown function (DUF1698) AP033_20672 PF13649 Methyltransferase domain AP033_20673 PF01904 Protein of unknown function DUF72 AP033_20674 PF02938 GAD domain AP033_20674 PF01336 OB-fold nucleic acid binding domain AP033_20674 PF00152 tRNA synthetases class II (D, K and N) AP033_20675 PF00265 Thymidine kinase AP033_20676 PF00375 Sodium:dicarboxylate symporter family AP033_20677 PF00290 Tryptophan synthase alpha chain AP033_20678 PF00291 Pyridoxal-phosphate dependent enzyme AP033_20679 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AP033_20679 PF00218 Indole-3-glycerol phosphate synthase AP033_20680 PF02885 Glycosyl transferase family, helical bundle domain AP033_20680 PF00591 Glycosyl transferase family, a/b domain AP033_20681 PF00117 Glutamine amidotransferase class-I AP033_20682 PF04715 Anthranilate synthase component I, N terminal region AP033_20682 PF00425 chorismate binding enzyme AP033_20683 PF02811 PHP domain AP033_20684 PF01300 Telomere recombination AP033_20685 PF00849 RNA pseudouridylate synthase AP033_20685 PF01479 S4 domain AP033_20686 PF00664 ABC transporter transmembrane region AP033_20686 PF00005 ABC transporter AP033_20687 PF00005 ABC transporter AP033_20687 PF00664 ABC transporter transmembrane region AP033_20688 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_20690 PF00266 Aminotransferase class-V AP033_20691 PF00990 Diguanylate cyclase, GGDEF domain AP033_20691 PF08448 PAS fold AP033_20692 PF02698 DUF218 domain AP033_20694 PF00390 Malic enzyme, N-terminal domain AP033_20694 PF03949 Malic enzyme, NAD binding domain AP033_20696 PF01259 SAICAR synthetase AP033_20700 PF13488 Glycine zipper AP033_20700 PF00691 OmpA family AP033_20703 PF13183 4Fe-4S dicluster domain AP033_20703 PF01565 FAD binding domain AP033_20703 PF02913 FAD linked oxidases, C-terminal domain AP033_20704 PF04191 Phospholipid methyltransferase AP033_20705 PF00089 Trypsin AP033_20707 PF00221 Aromatic amino acid lyase AP033_20708 PF01175 Urocanase Rossmann-like domain AP033_20708 PF17391 Urocanase N-terminal domain AP033_20708 PF17392 Urocanase C-terminal domain AP033_20709 PF00491 Arginase family AP033_20710 PF01979 Amidohydrolase family AP033_20711 PF00392 Bacterial regulatory proteins, gntR family AP033_20711 PF07702 UTRA domain AP033_20713 PF04269 Protein of unknown function, DUF440 AP033_20714 PF08207 Elongation factor P (EF-P) KOW-like domain AP033_20714 PF09285 Elongation factor P, C-terminal AP033_20714 PF01132 Elongation factor P (EF-P) OB domain AP033_20716 PF00990 Diguanylate cyclase, GGDEF domain AP033_20716 PF13426 PAS domain AP033_20716 PF00563 EAL domain AP033_20717 PF00136 DNA polymerase family B AP033_20717 PF03104 DNA polymerase family B, exonuclease domain AP033_20718 PF00072 Response regulator receiver domain AP033_20718 PF00196 Bacterial regulatory proteins, luxR family AP033_20719 PF01541 GIY-YIG catalytic domain AP033_20719 PF02151 UvrB/uvrC motif AP033_20719 PF08459 UvrC Helix-hairpin-helix N-terminal AP033_20720 PF01066 CDP-alcohol phosphatidyltransferase AP033_20725 PF00072 Response regulator receiver domain AP033_20725 PF00990 Diguanylate cyclase, GGDEF domain AP033_20727 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AP033_20727 PF01409 tRNA synthetases class II core domain (F) AP033_20728 PF03147 Ferredoxin-fold anticodon binding domain AP033_20728 PF01588 Putative tRNA binding domain AP033_20728 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AP033_20728 PF03484 tRNA synthetase B5 domain AP033_20728 PF03483 B3/4 domain AP033_20729 PF00216 Bacterial DNA-binding protein AP033_20732 PF05724 Thiopurine S-methyltransferase (TPMT) AP033_20733 PF02222 ATP-grasp domain AP033_20735 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AP033_20735 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AP033_20736 PF04172 LrgB-like family AP033_20737 PF03788 LrgA family AP033_20738 PF08411 Exonuclease C-terminal AP033_20738 PF00929 Exonuclease AP033_20740 PF01641 SelR domain AP033_20741 PF02277 Phosphoribosyltransferase AP033_20742 PF02654 Cobalamin-5-phosphate synthase AP033_20743 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AP033_20745 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AP033_20746 PF01032 FecCD transport family AP033_20747 PF00005 ABC transporter AP033_20750 PF00672 HAMP domain AP033_20750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20750 PF17200 Single Cache domain 2 AP033_20753 PF00994 Probable molybdopterin binding domain AP033_20755 PF00175 Oxidoreductase NAD-binding domain AP033_20755 PF00111 2Fe-2S iron-sulfur cluster binding domain AP033_20755 PF00970 Oxidoreductase FAD-binding domain AP033_20756 PF00268 Ribonucleotide reductase, small chain AP033_20757 PF02867 Ribonucleotide reductase, barrel domain AP033_20757 PF03477 ATP cone domain AP033_20757 PF00317 Ribonucleotide reductase, all-alpha domain AP033_20759 PF03989 DNA gyrase C-terminal domain, beta-propeller AP033_20759 PF00521 DNA gyrase/topoisomerase IV, subunit A AP033_20762 PF07690 Major Facilitator Superfamily AP033_20764 PF00925 GTP cyclohydrolase II AP033_20770 PF05951 Bacterial protein of unknown function (DUF882) AP033_20771 PF00753 Metallo-beta-lactamase superfamily AP033_20774 PF03480 Bacterial extracellular solute-binding protein, family 7 AP033_20776 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AP033_20777 PF17200 Single Cache domain 2 AP033_20777 PF07730 Histidine kinase AP033_20778 PF00196 Bacterial regulatory proteins, luxR family AP033_20778 PF00072 Response regulator receiver domain AP033_20779 PF01047 MarR family AP033_20780 PF02028 BCCT, betaine/carnitine/choline family transporter AP033_20781 PF01522 Polysaccharide deacetylase AP033_20782 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP033_20783 PF02378 Phosphotransferase system, EIIC AP033_20784 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AP033_20785 PF02056 Family 4 glycosyl hydrolase AP033_20785 PF11975 Family 4 glycosyl hydrolase C-terminal domain AP033_20786 PF04794 YdjC-like protein AP033_20787 PF00356 Bacterial regulatory proteins, lacI family AP033_20788 PF13506 Glycosyl transferase family 21 AP033_20789 PF04349 Periplasmic glucan biosynthesis protein, MdoG AP033_20790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20790 PF17200 Single Cache domain 2 AP033_20790 PF00672 HAMP domain AP033_20793 PF00155 Aminotransferase class I and II AP033_20794 PF00672 HAMP domain AP033_20794 PF01966 HD domain AP033_20795 PF02581 Thiamine monophosphate synthase AP033_20795 PF08543 Phosphomethylpyrimidine kinase AP033_20796 PF00152 tRNA synthetases class II (D, K and N) AP033_20796 PF01336 OB-fold nucleic acid binding domain AP033_20797 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20797 PF00672 HAMP domain AP033_20798 PF01242 6-pyruvoyl tetrahydropterin synthase AP033_20799 PF03315 Serine dehydratase beta chain AP033_20799 PF03313 Serine dehydratase alpha chain AP033_20800 PF03222 Tryptophan/tyrosine permease family AP033_20801 PF00293 NUDIX domain AP033_20802 PF04715 Anthranilate synthase component I, N terminal region AP033_20802 PF00425 chorismate binding enzyme AP033_20805 PF04317 YcjX-like family, DUF463 AP033_20806 PF05128 Domain of unknown function (DUF697) AP033_20807 PF18024 Helix-turn-helix domain AP033_20807 PF00158 Sigma-54 interaction domain AP033_20808 PF13302 Acetyltransferase (GNAT) domain AP033_20810 PF00892 EamA-like transporter family AP033_20811 PF01168 Alanine racemase, N-terminal domain AP033_20811 PF00842 Alanine racemase, C-terminal domain AP033_20812 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20812 PF00672 HAMP domain AP033_20813 PF00939 Sodium:sulfate symporter transmembrane region AP033_20814 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20814 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_20814 PF00512 His Kinase A (phospho-acceptor) domain AP033_20815 PF00072 Response regulator receiver domain AP033_20815 PF00158 Sigma-54 interaction domain AP033_20815 PF02954 Bacterial regulatory protein, Fis family AP033_20816 PF04393 Protein of unknown function (DUF535) AP033_20817 PF06629 MltA-interacting protein MipA AP033_20818 PF00672 HAMP domain AP033_20818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20818 PF00512 His Kinase A (phospho-acceptor) domain AP033_20819 PF00072 Response regulator receiver domain AP033_20819 PF00486 Transcriptional regulatory protein, C terminal AP033_20823 PF13407 Periplasmic binding protein domain AP033_20824 PF00005 ABC transporter AP033_20825 PF02653 Branched-chain amino acid transport system / permease component AP033_20826 PF01609 Transposase DDE domain AP033_20826 PF05598 Transposase domain (DUF772) AP033_20828 PF01970 Tripartite tricarboxylate transporter TctA family AP033_20831 PF00392 Bacterial regulatory proteins, gntR family AP033_20831 PF07729 FCD domain AP033_20833 PF00285 Citrate synthase, C-terminal domain AP033_20834 PF00694 Aconitase C-terminal domain AP033_20834 PF00330 Aconitase family (aconitate hydratase) AP033_20835 PF04303 PrpF protein AP033_20836 PF16177 Acetyl-coenzyme A synthetase N-terminus AP033_20836 PF00501 AMP-binding enzyme AP033_20836 PF13193 AMP-binding enzyme C-terminal domain AP033_20839 PF01546 Peptidase family M20/M25/M40 AP033_20839 PF07687 Peptidase dimerisation domain AP033_20840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP033_20841 PF04209 homogentisate 1,2-dioxygenase AP033_20843 PF02798 Glutathione S-transferase, N-terminal domain AP033_20843 PF14497 Glutathione S-transferase, C-terminal domain AP033_20844 PF00072 Response regulator receiver domain AP033_20845 PF01627 Hpt domain AP033_20845 PF00512 His Kinase A (phospho-acceptor) domain AP033_20845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP033_20845 PF00072 Response regulator receiver domain AP033_20845 PF00672 HAMP domain AP033_20845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20846 PF08534 Redoxin AP033_20846 PF00462 Glutaredoxin AP033_20847 PF00990 Diguanylate cyclase, GGDEF domain AP033_20848 PF17785 PUA-like domain AP033_20848 PF10672 S-adenosylmethionine-dependent methyltransferase AP033_20849 PF00708 Acylphosphatase AP033_20850 PF04358 DsrC like protein AP033_20851 PF01027 Inhibitor of apoptosis-promoting Bax1 AP033_20852 PF00005 ABC transporter AP033_20853 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20854 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20855 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_20856 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP033_20856 PF14824 Sirohaem biosynthesis protein central AP033_20856 PF10414 Sirohaem synthase dimerisation region AP033_20859 PF04055 Radical SAM superfamily AP033_20860 PF06508 Queuosine biosynthesis protein QueC AP033_20864 PF00563 EAL domain AP033_20864 PF00990 Diguanylate cyclase, GGDEF domain AP033_20864 PF03707 Bacterial signalling protein N terminal repeat AP033_20866 PF17158 Membrane-associated sensor, integral membrane domain AP033_20866 PF00990 Diguanylate cyclase, GGDEF domain AP033_20867 PF00012 Hsp70 protein AP033_20868 PF00012 Hsp70 protein AP033_20870 PF00990 Diguanylate cyclase, GGDEF domain AP033_20870 PF00563 EAL domain AP033_20870 PF03707 Bacterial signalling protein N terminal repeat AP033_20875 PF04408 Helicase associated domain (HA2) AP033_20875 PF11898 Domain of unknown function (DUF3418) AP033_20875 PF00270 DEAD/DEAH box helicase AP033_20875 PF00271 Helicase conserved C-terminal domain AP033_20875 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AP033_20877 PF00012 Hsp70 protein AP033_20878 PF03099 Biotin/lipoate A/B protein ligase family AP033_20878 PF10437 Bacterial lipoate protein ligase C-terminus AP033_20879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_20879 PF03466 LysR substrate binding domain AP033_20880 PF07690 Major Facilitator Superfamily AP033_20881 PF03441 FAD binding domain of DNA photolyase AP033_20881 PF00875 DNA photolyase AP033_20882 PF00893 Small Multidrug Resistance protein AP033_20883 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20883 PF00672 HAMP domain AP033_20886 PF02895 Signal transducing histidine kinase, homodimeric domain AP033_20886 PF01627 Hpt domain AP033_20886 PF01584 CheW-like domain AP033_20886 PF07194 P2 response regulator binding domain AP033_20886 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20887 PF00072 Response regulator receiver domain AP033_20887 PF01627 Hpt domain AP033_20887 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20887 PF01584 CheW-like domain AP033_20888 PF03705 CheR methyltransferase, all-alpha domain AP033_20888 PF01739 CheR methyltransferase, SAM binding domain AP033_20890 PF00072 Response regulator receiver domain AP033_20890 PF01339 CheB methylesterase AP033_20891 PF01584 CheW-like domain AP033_20892 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20892 PF00672 HAMP domain AP033_20892 PF17202 Single cache domain 3 AP033_20893 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20893 PF12729 Four helix bundle sensory module for signal transduction AP033_20893 PF00672 HAMP domain AP033_20894 PF13426 PAS domain AP033_20894 PF08447 PAS fold AP033_20894 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20895 PF00271 Helicase conserved C-terminal domain AP033_20895 PF00270 DEAD/DEAH box helicase AP033_20897 PF02321 Outer membrane efflux protein AP033_20898 PF00529 HlyD membrane-fusion protein of T1SS AP033_20898 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP033_20899 PF07690 Major Facilitator Superfamily AP033_20900 PF02743 Cache domain AP033_20900 PF00672 HAMP domain AP033_20900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20901 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AP033_20902 PF05638 Type VI secretion system effector, Hcp AP033_20903 PF16671 Actin cross-linking domain AP033_20903 PF04717 Type VI secretion system, phage-baseplate injector AP033_20907 PF01810 LysE type translocator AP033_20908 PF01235 Sodium:alanine symporter family AP033_20911 PF13416 Bacterial extracellular solute-binding protein AP033_20912 PF13416 Bacterial extracellular solute-binding protein AP033_20913 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20914 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20915 PF08402 TOBE domain AP033_20915 PF00005 ABC transporter AP033_20919 PF01171 PP-loop family AP033_20920 PF00582 Universal stress protein family AP033_20921 PF13545 Crp-like helix-turn-helix domain AP033_20921 PF00027 Cyclic nucleotide-binding domain AP033_20924 PF00403 Heavy-metal-associated domain AP033_20926 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AP033_20926 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AP033_20929 PF00115 Cytochrome C and Quinol oxidase polypeptide I AP033_20932 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20932 PF00512 His Kinase A (phospho-acceptor) domain AP033_20932 PF09308 LuxQ, periplasmic AP033_20932 PF00072 Response regulator receiver domain AP033_20933 PF00664 ABC transporter transmembrane region AP033_20933 PF00005 ABC transporter AP033_20933 PF03412 Peptidase C39 family AP033_20935 PF03412 Peptidase C39 family AP033_20935 PF00005 ABC transporter AP033_20935 PF00664 ABC transporter transmembrane region AP033_20937 PF02794 RTX toxin acyltransferase family AP033_20938 PF16671 Actin cross-linking domain AP033_20938 PF12146 Serine aminopeptidase, S33 AP033_20938 PF11713 Peptidase C80 family AP033_20938 PF07634 RtxA repeat AP033_20938 PF11647 Membrane Localization Domain AP033_20941 PF06303 MatP N-terminal domain AP033_20941 PF17414 MatP C-terminal ribbon-helix-helix domain AP033_20942 PF13654 AAA domain AP033_20942 PF05362 Lon protease (S16) C-terminal proteolytic domain AP033_20943 PF07977 FabA-like domain AP033_20944 PF04957 Ribosome modulation factor AP033_20948 PF10672 S-adenosylmethionine-dependent methyltransferase AP033_20948 PF02926 THUMP domain AP033_20948 PF01170 Putative RNA methylase family UPF0020 AP033_20950 PF07126 Cell-division protein ZapC AP033_20951 PF01180 Dihydroorotate dehydrogenase AP033_20952 PF05088 Bacterial NAD-glutamate dehydrogenase AP033_20953 PF11940 Domain of unknown function (DUF3458) Ig-like fold AP033_20953 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AP033_20953 PF01433 Peptidase family M1 domain AP033_20955 PF11818 C-terminal domain of tail specific protease (DUF3340) AP033_20955 PF00595 PDZ domain AP033_20955 PF17804 Tail specific protease N-terminal domain AP033_20955 PF03572 Peptidase family S41 AP033_20956 PF04352 ProQ/FINO family AP033_20956 PF17516 ProQ C-terminal domain AP033_20957 PF13185 GAF domain AP033_20958 PF00005 ABC transporter AP033_20958 PF00664 ABC transporter transmembrane region AP033_20959 PF04403 Paraquat-inducible protein A AP033_20960 PF02470 MlaD protein AP033_20961 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AP033_20961 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AP033_20961 PF01189 16S rRNA methyltransferase RsmB/F AP033_20962 PF13509 S1 domain AP033_20962 PF17783 CvfB-like winged helix domain AP033_20965 PF00793 DAHP synthetase I family AP033_20966 PF04461 Protein of unknown function (DUF520) AP033_20967 PF02146 Sir2 family AP033_20970 PF13247 4Fe-4S dicluster domain AP033_20971 PF01568 Molydopterin dinucleotide binding domain AP033_20971 PF00384 Molybdopterin oxidoreductase AP033_20971 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AP033_20973 PF02613 Nitrate reductase delta subunit AP033_20977 PF02634 FdhD/NarQ family AP033_20979 PF00005 ABC transporter AP033_20979 PF12848 ABC transporter AP033_20980 PF00989 PAS fold AP033_20980 PF00512 His Kinase A (phospho-acceptor) domain AP033_20980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_20981 PF00158 Sigma-54 interaction domain AP033_20981 PF00072 Response regulator receiver domain AP033_20981 PF02954 Bacterial regulatory protein, Fis family AP033_20982 PF12849 PBP superfamily domain AP033_20983 PF00528 Binding-protein-dependent transport system inner membrane component AP033_20984 PF08402 TOBE domain AP033_20984 PF00005 ABC transporter AP033_20985 PF12804 MobA-like NTP transferase domain AP033_20986 PF00994 Probable molybdopterin binding domain AP033_20986 PF03453 MoeA N-terminal region (domain I and II) AP033_20986 PF03454 MoeA C-terminal region (domain IV) AP033_20988 PF00480 ROK family AP033_20991 PF02743 Cache domain AP033_20991 PF00672 HAMP domain AP033_20991 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_20992 PF00877 NlpC/P60 family AP033_20996 PF01554 MatE AP033_20998 PF01068 ATP dependent DNA ligase domain AP033_20998 PF14743 DNA ligase OB-like domain AP033_21001 PF02472 Biopolymer transport protein ExbD/TolR AP033_21002 PF01618 MotA/TolQ/ExbB proton channel family AP033_21003 PF01618 MotA/TolQ/ExbB proton channel family AP033_21005 PF13416 Bacterial extracellular solute-binding protein AP033_21006 PF00528 Binding-protein-dependent transport system inner membrane component AP033_21007 PF00528 Binding-protein-dependent transport system inner membrane component AP033_21008 PF17912 MalK OB fold domain AP033_21008 PF00005 ABC transporter AP033_21009 PF00455 DeoR C terminal sensor domain AP033_21009 PF08220 DeoR-like helix-turn-helix domain AP033_21010 PF03009 Glycerophosphoryl diester phosphodiesterase family AP033_21011 PF04074 YhcH/YjgK/YiaL AP033_21012 PF01042 Endoribonuclease L-PSP AP033_21013 PF00356 Bacterial regulatory proteins, lacI family AP033_21014 PF00232 Glycosyl hydrolase family 1 AP033_21015 PF00141 Peroxidase AP033_21016 PF03466 LysR substrate binding domain AP033_21016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21018 PF00529 HlyD membrane-fusion protein of T1SS AP033_21020 PF00005 ABC transporter AP033_21020 PF02687 FtsX-like permease family AP033_21020 PF12704 MacB-like periplasmic core domain AP033_21021 PF00005 ABC transporter AP033_21021 PF12704 MacB-like periplasmic core domain AP033_21021 PF02687 FtsX-like permease family AP033_21022 PF00005 ABC transporter AP033_21022 PF12704 MacB-like periplasmic core domain AP033_21022 PF02687 FtsX-like permease family AP033_21023 PF02322 Cytochrome bd terminal oxidase subunit II AP033_21024 PF01654 Cytochrome bd terminal oxidase subunit I AP033_21026 PF10415 Fumarase C C-terminus AP033_21026 PF00206 Lyase AP033_21032 PF00501 AMP-binding enzyme AP033_21032 PF13193 AMP-binding enzyme C-terminal domain AP033_21033 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21033 PF03466 LysR substrate binding domain AP033_21034 PF00361 Proton-conducting membrane transporter AP033_21034 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AP033_21035 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AP033_21036 PF00080 Copper/zinc superoxide dismutase (SODC) AP033_21038 PF00199 Catalase AP033_21038 PF06628 Catalase-related immune-responsive AP033_21040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21040 PF03466 LysR substrate binding domain AP033_21041 PF03306 Alpha-acetolactate decarboxylase AP033_21042 PF00205 Thiamine pyrophosphate enzyme, central domain AP033_21042 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP033_21042 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP033_21044 PF00990 Diguanylate cyclase, GGDEF domain AP033_21044 PF00672 HAMP domain AP033_21044 PF00563 EAL domain AP033_21044 PF17154 Gammaproteobacterial periplasmic sensor domain AP033_21045 PF00990 Diguanylate cyclase, GGDEF domain AP033_21046 PF01263 Aldose 1-epimerase AP033_21047 PF10509 Galactokinase galactose-binding signature AP033_21047 PF08544 GHMP kinases C terminal AP033_21047 PF00288 GHMP kinases N terminal domain AP033_21048 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AP033_21048 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AP033_21049 PF07690 Major Facilitator Superfamily AP033_21053 PF00990 Diguanylate cyclase, GGDEF domain AP033_21053 PF00072 Response regulator receiver domain AP033_21056 PF00072 Response regulator receiver domain AP033_21056 PF01584 CheW-like domain AP033_21058 PF12431 Transcriptional regulator AP033_21058 PF00072 Response regulator receiver domain AP033_21059 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21059 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AP033_21059 PF17203 Single cache domain 3 AP033_21059 PF00989 PAS fold AP033_21062 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP033_21066 PF04204 Homoserine O-succinyltransferase AP033_21069 PF05971 RNA methyltransferase AP033_21070 PF01863 Protein of unknown function DUF45 AP033_21072 PF03466 LysR substrate binding domain AP033_21072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21076 PF02321 Outer membrane efflux protein AP033_21077 PF00691 OmpA family AP033_21077 PF05736 OprF membrane domain AP033_21079 PF16653 Saccharopine dehydrogenase C-terminal domain AP033_21079 PF03435 Saccharopine dehydrogenase NADP binding domain AP033_21080 PF00282 Pyridoxal-dependent decarboxylase conserved domain AP033_21081 PF00202 Aminotransferase class-III AP033_21082 PF06965 Na+/H+ antiporter 1 AP033_21085 PF00005 ABC transporter AP033_21086 PF01554 MatE AP033_21087 PF13460 NAD(P)H-binding AP033_21087 PF11066 Protein of unknown function (DUF2867) AP033_21089 PF07690 Major Facilitator Superfamily AP033_21090 PF00849 RNA pseudouridylate synthase AP033_21090 PF01479 S4 domain AP033_21091 PF04851 Type III restriction enzyme, res subunit AP033_21091 PF00271 Helicase conserved C-terminal domain AP033_21093 PF00072 Response regulator receiver domain AP033_21093 PF00486 Transcriptional regulatory protein, C terminal AP033_21094 PF00989 PAS fold AP033_21094 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21094 PF11808 Phosphate regulon sensor protein PhoR AP033_21094 PF00512 His Kinase A (phospho-acceptor) domain AP033_21095 PF01386 Ribosomal L25p family AP033_21096 PF00990 Diguanylate cyclase, GGDEF domain AP033_21096 PF00360 Phytochrome region AP033_21096 PF01590 GAF domain AP033_21096 PF00563 EAL domain AP033_21098 PF12729 Four helix bundle sensory module for signal transduction AP033_21098 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_21098 PF00672 HAMP domain AP033_21102 PF12793 Sugar transport-related sRNA regulator N-term AP033_21102 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP033_21104 PF01752 Collagenase AP033_21104 PF04151 Bacterial pre-peptidase C-terminal domain AP033_21104 PF08453 Peptidase family M9 N-terminal AP033_21106 PF00990 Diguanylate cyclase, GGDEF domain AP033_21106 PF00563 EAL domain AP033_21106 PF03707 Bacterial signalling protein N terminal repeat AP033_21107 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21107 PF00512 His Kinase A (phospho-acceptor) domain AP033_21107 PF09308 LuxQ, periplasmic AP033_21107 PF00072 Response regulator receiver domain AP033_21108 PF00571 CBS domain AP033_21108 PF01769 Divalent cation transporter AP033_21108 PF03448 MgtE intracellular N domain AP033_21110 PF03222 Tryptophan/tyrosine permease family AP033_21111 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP033_21112 PF00005 ABC transporter AP033_21115 PF06945 Protein of unknown function (DUF1289) AP033_21117 PF13416 Bacterial extracellular solute-binding protein AP033_21118 PF00528 Binding-protein-dependent transport system inner membrane component AP033_21119 PF00005 ABC transporter AP033_21120 PF01066 CDP-alcohol phosphatidyltransferase AP033_21121 PF00849 RNA pseudouridylate synthase AP033_21122 PF00209 Sodium:neurotransmitter symporter family AP033_21123 PF13091 PLD-like domain AP033_21123 PF13396 Phospholipase_D-nuclease N-terminal AP033_21124 PF01053 Cys/Met metabolism PLP-dependent enzyme AP033_21125 PF03352 Methyladenine glycosylase AP033_21126 PF00873 AcrB/AcrD/AcrF family AP033_21127 PF13533 Biotin-lipoyl like AP033_21128 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP033_21128 PF00529 HlyD membrane-fusion protein of T1SS AP033_21131 PF04012 PspA/IM30 family AP033_21132 PF02954 Bacterial regulatory protein, Fis family AP033_21132 PF00158 Sigma-54 interaction domain AP033_21133 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP033_21134 PF00528 Binding-protein-dependent transport system inner membrane component AP033_21135 PF12911 N-terminal TM domain of oligopeptide transport permease C AP033_21135 PF00528 Binding-protein-dependent transport system inner membrane component AP033_21136 PF00005 ABC transporter AP033_21136 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_21137 PF00005 ABC transporter AP033_21140 PF01368 DHH family AP033_21140 PF02833 DHHA2 domain AP033_21145 PF01568 Molydopterin dinucleotide binding domain AP033_21145 PF00384 Molybdopterin oxidoreductase AP033_21145 PF18364 Molybdopterin oxidoreductase N-terminal domain AP033_21146 PF03264 NapC/NirT cytochrome c family, N-terminal region AP033_21147 PF06796 Periplasmic nitrate reductase protein NapE AP033_21148 PF01226 Formate/nitrite transporter AP033_21150 PF01370 NAD dependent epimerase/dehydratase family AP033_21151 PF02698 DUF218 domain AP033_21153 PF04279 Intracellular septation protein A AP033_21154 PF03061 Thioesterase superfamily AP033_21155 PF03795 YCII-related domain AP033_21157 PF01717 Cobalamin-independent synthase, Catalytic domain AP033_21157 PF08267 Cobalamin-independent synthase, N-terminal domain AP033_21158 PF03466 LysR substrate binding domain AP033_21158 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21161 PF05193 Peptidase M16 inactive domain AP033_21161 PF00675 Insulinase (Peptidase family M16) AP033_21162 PF08448 PAS fold AP033_21162 PF00990 Diguanylate cyclase, GGDEF domain AP033_21162 PF08447 PAS fold AP033_21162 PF00563 EAL domain AP033_21163 PF08497 Radical SAM N-terminal AP033_21163 PF11842 Domain of unknown function (DUF3362) AP033_21163 PF04055 Radical SAM superfamily AP033_21164 PF01810 LysE type translocator AP033_21165 PF01037 Lrp/AsnC ligand binding domain AP033_21166 PF16330 MukB hinge domain AP033_21166 PF04310 MukB N-terminal AP033_21167 PF04288 MukE-like family AP033_21168 PF17193 MukF C-terminal domain AP033_21168 PF17192 MukF middle domain AP033_21168 PF03882 MukF winged-helix domain AP033_21170 PF02698 DUF218 domain AP033_21171 PF00486 Transcriptional regulatory protein, C terminal AP033_21171 PF00072 Response regulator receiver domain AP033_21172 PF02613 Nitrate reductase delta subunit AP033_21173 PF00356 Bacterial regulatory proteins, lacI family AP033_21174 PF04993 TfoX N-terminal domain AP033_21174 PF04994 TfoX C-terminal domain AP033_21178 PF00534 Glycosyl transferases group 1 AP033_21178 PF08323 Starch synthase catalytic domain AP033_21179 PF00483 Nucleotidyl transferase AP033_21180 PF01131 DNA topoisomerase AP033_21180 PF08272 Topoisomerase I zinc-ribbon-like AP033_21180 PF01751 Toprim domain AP033_21180 PF01396 Topoisomerase DNA binding C4 zinc finger AP033_21181 PF10692 Protein of unknown function (DUF2498) AP033_21182 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AP033_21183 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AP033_21184 PF04376 Arginine-tRNA-protein transferase, N terminus AP033_21184 PF04377 Arginine-tRNA-protein transferase, C terminus AP033_21185 PF01176 Translation initiation factor 1A / IF-1 AP033_21186 PF12241 Trans-2-enoyl-CoA reductase catalytic region AP033_21186 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AP033_21186 PF07055 Enoyl reductase FAD binding domain AP033_21187 PF02770 Acyl-CoA dehydrogenase, middle domain AP033_21187 PF09317 Domain of unknown function (DUF1974) AP033_21187 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AP033_21187 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AP033_21188 PF16295 Tetracyclin repressor-like, C-terminal domain AP033_21188 PF00440 Bacterial regulatory proteins, tetR family AP033_21190 PF07383 Protein of unknown function (DUF1496) AP033_21191 PF00171 Aldehyde dehydrogenase family AP033_21192 PF00440 Bacterial regulatory proteins, tetR family AP033_21192 PF08362 YcdC-like protein, C-terminal region AP033_21196 PF00924 Mechanosensitive ion channel AP033_21196 PF05552 Conserved TM helix AP033_21197 PF04403 Paraquat-inducible protein A AP033_21198 PF02470 MlaD protein AP033_21200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP033_21201 PF00873 AcrB/AcrD/AcrF family AP033_21203 PF13356 Arm DNA-binding domain AP033_21203 PF00589 Phage integrase family AP033_21204 PF00589 Phage integrase family AP033_21204 PF13356 Arm DNA-binding domain AP033_21205 PF12419 SNF2 Helicase protein AP033_21205 PF00271 Helicase conserved C-terminal domain AP033_21205 PF00176 SNF2 family N-terminal domain AP033_21206 PF01527 Transposase AP033_21207 PF00665 Integrase core domain AP033_21211 PF03441 FAD binding domain of DNA photolyase AP033_21211 PF00875 DNA photolyase AP033_21213 PF09905 DNA-binding protein VF530 AP033_21214 PF02954 Bacterial regulatory protein, Fis family AP033_21214 PF01590 GAF domain AP033_21214 PF00158 Sigma-54 interaction domain AP033_21215 PF00171 Aldehyde dehydrogenase family AP033_21219 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP033_21221 PF12833 Helix-turn-helix domain AP033_21222 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AP033_21222 PF02378 Phosphotransferase system, EIIC AP033_21222 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP033_21223 PF01238 Phosphomannose isomerase type I AP033_21224 PF06610 L-alanine exporter AP033_21225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21225 PF00512 His Kinase A (phospho-acceptor) domain AP033_21225 PF09308 LuxQ, periplasmic AP033_21225 PF00072 Response regulator receiver domain AP033_21227 PF02445 Quinolinate synthetase A protein AP033_21229 PF00691 OmpA family AP033_21230 PF04052 TolB amino-terminal domain AP033_21230 PF07676 WD40-like Beta Propeller Repeat AP033_21232 PF02472 Biopolymer transport protein ExbD/TolR AP033_21233 PF01618 MotA/TolQ/ExbB proton channel family AP033_21234 PF03061 Thioesterase superfamily AP033_21235 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) AP033_21236 PF08173 Membrane bound YbgT-like protein AP033_21237 PF02322 Cytochrome bd terminal oxidase subunit II AP033_21238 PF01654 Cytochrome bd terminal oxidase subunit I AP033_21240 PF17864 RuvB AAA lid domain AP033_21240 PF05491 RuvB C-terminal winged helix domain AP033_21240 PF05496 Holliday junction DNA helicase RuvB P-loop domain AP033_21241 PF01330 RuvA N terminal domain AP033_21241 PF07499 RuvA, C-terminal domain AP033_21242 PF02075 Crossover junction endodeoxyribonuclease RuvC AP033_21243 PF01406 tRNA synthetases class I (C) catalytic domain AP033_21243 PF09190 DALR domain AP033_21244 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AP033_21245 PF00149 Calcineurin-like phosphoesterase AP033_21246 PF00563 EAL domain AP033_21246 PF08668 HDOD domain AP033_21247 PF02810 SEC-C motif AP033_21248 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AP033_21249 PF13609 Gram-negative porin AP033_21250 PF06733 DEAD_2 AP033_21250 PF13307 Helicase C-terminal domain AP033_21251 PF01925 Sulfite exporter TauE/SafE AP033_21252 PF07445 Primosomal replication protein priC AP033_21253 PF10689 Protein of unknown function (DUF2496) AP033_21254 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_21254 PF00672 HAMP domain AP033_21255 PF03372 Endonuclease/Exonuclease/phosphatase family AP033_21256 PF00528 Binding-protein-dependent transport system inner membrane component AP033_21257 PF00528 Binding-protein-dependent transport system inner membrane component AP033_21258 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_21259 PF00005 ABC transporter AP033_21262 PF01228 Glycine radical AP033_21262 PF02901 Pyruvate formate lyase-like AP033_21264 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_21264 PF00672 HAMP domain AP033_21264 PF12729 Four helix bundle sensory module for signal transduction AP033_21265 PF04055 Radical SAM superfamily AP033_21267 PF03887 YfbU domain AP033_21268 PF06798 PrkA serine protein kinase C-terminal domain AP033_21268 PF08298 PrkA AAA domain AP033_21269 PF04285 Protein of unknown function (DUF444) AP033_21270 PF04293 SpoVR like protein AP033_21271 PF02348 Cytidylyltransferase AP033_21272 PF03966 Trm112p-like protein AP033_21273 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AP033_21274 PF00005 ABC transporter AP033_21274 PF00664 ABC transporter transmembrane region AP033_21275 PF13567 Domain of unknown function (DUF4131) AP033_21275 PF00753 Metallo-beta-lactamase superfamily AP033_21275 PF03772 Competence protein AP033_21277 PF12704 MacB-like periplasmic core domain AP033_21277 PF02687 FtsX-like permease family AP033_21278 PF00005 ABC transporter AP033_21279 PF02687 FtsX-like permease family AP033_21279 PF12704 MacB-like periplasmic core domain AP033_21281 PF00270 DEAD/DEAH box helicase AP033_21281 PF00271 Helicase conserved C-terminal domain AP033_21281 PF17757 UvrB interaction domain AP033_21281 PF03461 TRCF domain AP033_21281 PF02559 CarD-like/TRCF domain AP033_21283 PF16458 Beta-prism lectin AP033_21283 PF12563 Hemolytic toxin N terminal AP033_21283 PF07968 Leukocidin/Hemolysin toxin family AP033_21285 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_21286 PF05728 Uncharacterised protein family (UPF0227) AP033_21288 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AP033_21288 PF13036 Peptidoglycan-synthase activator LpoB AP033_21291 PF01230 HIT domain AP033_21292 PF00672 HAMP domain AP033_21292 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_21294 PF07840 FadR C-terminal domain AP033_21294 PF00392 Bacterial regulatory proteins, gntR family AP033_21295 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AP033_21296 PF02600 Disulfide bond formation protein DsbB AP033_21297 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AP033_21297 PF09397 Ftsk gamma domain AP033_21297 PF01580 FtsK/SpoIIIE family AP033_21297 PF17854 FtsK alpha domain AP033_21298 PF01037 Lrp/AsnC ligand binding domain AP033_21299 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AP033_21299 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AP033_21301 PF03466 LysR substrate binding domain AP033_21301 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21303 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AP033_21304 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AP033_21305 PF18073 Rubredoxin metal binding domain AP033_21306 PF06305 Lipopolysaccharide assembly protein A domain AP033_21307 PF00216 Bacterial DNA-binding protein AP033_21308 PF00575 S1 RNA binding domain AP033_21309 PF02224 Cytidylate kinase AP033_21311 PF13145 PPIC-type PPIASE domain AP033_21312 PF00216 Bacterial DNA-binding protein AP033_21313 PF00004 ATPase family associated with various cellular activities (AAA) AP033_21313 PF02190 ATP-dependent protease La (LON) substrate-binding domain AP033_21313 PF05362 Lon protease (S16) C-terminal proteolytic domain AP033_21314 PF06689 ClpX C4-type zinc finger AP033_21314 PF10431 C-terminal, D2-small domain, of ClpB protein AP033_21314 PF07724 AAA domain (Cdc48 subfamily) AP033_21315 PF00574 Clp protease AP033_21316 PF05697 Bacterial trigger factor protein (TF) AP033_21316 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP033_21316 PF05698 Bacterial trigger factor protein (TF) C-terminus AP033_21317 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21317 PF00512 His Kinase A (phospho-acceptor) domain AP033_21318 PF02954 Bacterial regulatory protein, Fis family AP033_21318 PF00072 Response regulator receiver domain AP033_21318 PF00158 Sigma-54 interaction domain AP033_21319 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AP033_21320 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AP033_21321 PF03480 Bacterial extracellular solute-binding protein, family 7 AP033_21322 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AP033_21325 PF13188 PAS domain AP033_21325 PF00990 Diguanylate cyclase, GGDEF domain AP033_21325 PF03707 Bacterial signalling protein N terminal repeat AP033_21325 PF00563 EAL domain AP033_21334 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AP033_21334 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AP033_21335 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AP033_21336 PF01494 FAD binding domain AP033_21337 PF03466 LysR substrate binding domain AP033_21337 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21339 PF01568 Molydopterin dinucleotide binding domain AP033_21339 PF18364 Molybdopterin oxidoreductase N-terminal domain AP033_21339 PF00384 Molybdopterin oxidoreductase AP033_21340 PF03264 NapC/NirT cytochrome c family, N-terminal region AP033_21341 PF00704 Glycosyl hydrolases family 18 AP033_21342 PF07670 Nucleoside recognition AP033_21342 PF07662 Na+ dependent nucleoside transporter C-terminus AP033_21342 PF01773 Na+ dependent nucleoside transporter N-terminus AP033_21343 PF03466 LysR substrate binding domain AP033_21343 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21344 PF13406 Transglycosylase SLT domain AP033_21345 PF05166 YcgL domain AP033_21346 PF05209 Septum formation inhibitor MinC, N-terminal domain AP033_21346 PF03775 Septum formation inhibitor MinC, C-terminal domain AP033_21347 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AP033_21348 PF03776 Septum formation topological specificity factor MinE AP033_21349 PF04170 NlpE N-terminal domain AP033_21354 PF07690 Major Facilitator Superfamily AP033_21355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_21355 PF00672 HAMP domain AP033_21355 PF12729 Four helix bundle sensory module for signal transduction AP033_21356 PF07883 Cupin domain AP033_21356 PF01381 Helix-turn-helix AP033_21357 PF03594 Benzoate membrane transport protein AP033_21358 PF00501 AMP-binding enzyme AP033_21358 PF13193 AMP-binding enzyme C-terminal domain AP033_21359 PF13378 Enolase C-terminal domain-like AP033_21360 PF00378 Enoyl-CoA hydratase/isomerase AP033_21361 PF12697 Alpha/beta hydrolase family AP033_21362 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP033_21362 PF16582 Middle domain of thiamine pyrophosphate AP033_21362 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP033_21363 PF00425 chorismate binding enzyme AP033_21364 PF00155 Aminotransferase class I and II AP033_21366 PF13286 Phosphohydrolase-associated domain AP033_21366 PF01966 HD domain AP033_21370 PF00570 HRDC domain AP033_21370 PF01612 3'-5' exonuclease AP033_21371 PF00501 AMP-binding enzyme AP033_21371 PF13193 AMP-binding enzyme C-terminal domain AP033_21372 PF00561 alpha/beta hydrolase fold AP033_21375 PF00814 Glycoprotease family AP033_21376 PF04851 Type III restriction enzyme, res subunit AP033_21376 PF13307 Helicase C-terminal domain AP033_21378 PF00551 Formyl transferase AP033_21378 PF01842 ACT domain AP033_21379 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_21379 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AP033_21380 PF01343 Peptidase family S49 AP033_21381 PF00710 Asparaginase, N-terminal AP033_21381 PF17763 Glutaminase/Asparaginase C-terminal domain AP033_21382 PF07023 Protein of unknown function (DUF1315) AP033_21384 PF01641 SelR domain AP033_21385 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_21385 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AP033_21386 PF01263 Aldose 1-epimerase AP033_21388 PF13847 Methyltransferase domain AP033_21391 PF01584 CheW-like domain AP033_21391 PF00072 Response regulator receiver domain AP033_21392 PF00480 ROK family AP033_21393 PF02887 Pyruvate kinase, alpha/beta domain AP033_21393 PF00224 Pyruvate kinase, barrel domain AP033_21394 PF01734 Patatin-like phospholipase AP033_21397 PF00209 Sodium:neurotransmitter symporter family AP033_21399 PF00367 phosphotransferase system, EIIB AP033_21399 PF02378 Phosphotransferase system, EIIC AP033_21400 PF01026 TatD related DNase AP033_21401 PF09115 DNA polymerase III, delta subunit, C terminal AP033_21402 PF02223 Thymidylate kinase AP033_21403 PF02618 YceG-like family AP033_21404 PF01063 Amino-transferase class IV AP033_21405 PF00109 Beta-ketoacyl synthase, N-terminal domain AP033_21405 PF02801 Beta-ketoacyl synthase, C-terminal domain AP033_21406 PF00550 Phosphopantetheine attachment site AP033_21408 PF00698 Acyl transferase domain AP033_21409 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AP033_21409 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AP033_21410 PF02504 Fatty acid synthesis protein AP033_21411 PF01783 Ribosomal L32p protein family AP033_21412 PF02620 Large ribosomal RNA subunit accumulation protein YceD AP033_21413 PF02545 Maf-like protein AP033_21414 PF01479 S4 domain AP033_21414 PF00849 RNA pseudouridylate synthase AP033_21415 PF12111 Polyribonucleotide phosphorylase C terminal AP033_21415 PF10150 Ribonuclease E/G family AP033_21415 PF00575 S1 RNA binding domain AP033_21416 PF00916 Sulfate permease family AP033_21416 PF01740 STAS domain AP033_21418 PF00465 Iron-containing alcohol dehydrogenase AP033_21418 PF00171 Aldehyde dehydrogenase family AP033_21419 PF01914 MarC family integral membrane protein AP033_21420 PF02774 Semialdehyde dehydrogenase, dimerisation domain AP033_21420 PF01118 Semialdehyde dehydrogenase, NAD binding domain AP033_21421 PF03553 Na+/H+ antiporter family AP033_21423 PF04245 37-kD nucleoid-associated bacterial protein AP033_21424 PF07208 Protein of unknown function (DUF1414) AP033_21425 PF00884 Sulfatase AP033_21425 PF11893 Domain of unknown function (DUF3413) AP033_21432 PF12961 Domain of unknown function (DUF3850) AP033_21440 PF00589 Phage integrase family AP033_21440 PF02899 Phage integrase, N-terminal SAM-like domain AP033_21442 PF10548 P22AR C-terminal domain AP033_21442 PF02498 BRO family, N-terminal domain AP033_21468 PF05598 Transposase domain (DUF772) AP033_21468 PF01609 Transposase DDE domain AP033_21476 PF00166 Chaperonin 10 Kd subunit AP033_21477 PF00589 Phage integrase family AP033_21477 PF02899 Phage integrase, N-terminal SAM-like domain AP033_21481 PF00850 Histone deacetylase domain AP033_21482 PF01751 Toprim domain AP033_21482 PF01131 DNA topoisomerase AP033_21483 PF00462 Glutaredoxin AP033_21484 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AP033_21484 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AP033_21487 PF04333 MlaA lipoprotein AP033_21489 PF03918 Cytochrome C biogenesis protein AP033_21490 PF08534 Redoxin AP033_21491 PF01578 Cytochrome C assembly protein AP033_21491 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AP033_21492 PF03100 CcmE AP033_21493 PF04995 Heme exporter protein D (CcmD) AP033_21494 PF01578 Cytochrome C assembly protein AP033_21495 PF03379 CcmB protein AP033_21496 PF00005 ABC transporter AP033_21498 PF01584 CheW-like domain AP033_21500 PF13614 AAA domain AP033_21501 PF00072 Response regulator receiver domain AP033_21501 PF01339 CheB methylesterase AP033_21502 PF01584 CheW-like domain AP033_21502 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21502 PF02895 Signal transducing histidine kinase, homodimeric domain AP033_21502 PF07194 P2 response regulator binding domain AP033_21502 PF01627 Hpt domain AP033_21503 PF04344 Chemotaxis phosphatase, CheZ AP033_21504 PF00072 Response regulator receiver domain AP033_21505 PF04545 Sigma-70, region 4 AP033_21505 PF04542 Sigma-70 region 2 AP033_21505 PF04539 Sigma-70 region 3 AP033_21506 PF10609 NUBPL iron-transfer P-loop NTPase AP033_21507 PF00448 SRP54-type protein, GTPase domain AP033_21508 PF00771 FHIPEP family AP033_21509 PF00300 Histidine phosphatase superfamily (branch 1) AP033_21510 PF05193 Peptidase M16 inactive domain AP033_21510 PF00675 Insulinase (Peptidase family M16) AP033_21512 PF05746 DALR anticodon binding domain AP033_21512 PF03485 Arginyl tRNA synthetase N terminal domain AP033_21512 PF00750 tRNA synthetases class I (R) AP033_21516 PF02421 Ferrous iron transport protein B AP033_21516 PF07664 Ferrous iron transport protein B C terminus AP033_21516 PF07670 Nucleoside recognition AP033_21517 PF04023 FeoA domain AP033_21518 PF02311 AraC-like ligand binding domain AP033_21518 PF12833 Helix-turn-helix domain AP033_21519 PF01297 Zinc-uptake complex component A periplasmic AP033_21520 PF00005 ABC transporter AP033_21521 PF00950 ABC 3 transport family AP033_21522 PF02629 CoA binding domain AP033_21522 PF00549 CoA-ligase AP033_21523 PF00549 CoA-ligase AP033_21523 PF08442 ATP-grasp domain AP033_21524 PF02817 e3 binding domain AP033_21524 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP033_21524 PF00364 Biotin-requiring enzyme AP033_21525 PF02779 Transketolase, pyrimidine binding domain AP033_21525 PF16870 2-oxoglutarate dehydrogenase C-terminal AP033_21525 PF00676 Dehydrogenase E1 component AP033_21525 PF16078 2-oxoglutarate dehydrogenase N-terminus AP033_21526 PF13085 2Fe-2S iron-sulfur cluster binding domain AP033_21527 PF00890 FAD binding domain AP033_21527 PF02910 Fumarate reductase flavoprotein C-term AP033_21528 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AP033_21529 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AP033_21530 PF00285 Citrate synthase, C-terminal domain AP033_21531 PF01784 NIF3 (NGG1p interacting factor 3) AP033_21533 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP033_21533 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP033_21533 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP033_21533 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP033_21534 PF03925 SeqA protein C-terminal domain AP033_21534 PF17206 SeqA protein N-terminal domain AP033_21535 PF12697 Alpha/beta hydrolase family AP033_21537 PF00258 Flavodoxin AP033_21538 PF04172 LrgB-like family AP033_21539 PF03788 LrgA family AP033_21540 PF03466 LysR substrate binding domain AP033_21540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21542 PF01475 Ferric uptake regulator family AP033_21543 PF01118 Semialdehyde dehydrogenase, NAD binding domain AP033_21543 PF02774 Semialdehyde dehydrogenase, dimerisation domain AP033_21544 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP033_21544 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP033_21544 PF11890 Domain of unknown function (DUF3410) AP033_21545 PF02801 Beta-ketoacyl synthase, C-terminal domain AP033_21545 PF00109 Beta-ketoacyl synthase, N-terminal domain AP033_21546 PF01266 FAD dependent oxidoreductase AP033_21546 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AP033_21547 PF03358 NADPH-dependent FMN reductase AP033_21548 PF08891 YfcL protein AP033_21549 PF04315 Elongation factor P hydroxylase AP033_21550 PF03458 UPF0126 domain AP033_21551 PF01264 Chorismate synthase AP033_21552 PF05175 Methyltransferase small domain AP033_21553 PF01713 Smr domain AP033_21554 PF01312 FlhB HrpN YscU SpaS Family AP033_21555 PF01311 Bacterial export proteins, family 1 AP033_21556 PF01313 Bacterial export proteins, family 3 AP033_21557 PF00813 FliP family AP033_21558 PF04347 Flagellar biosynthesis protein, FliO AP033_21559 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AP033_21560 PF02154 Flagellar motor switch protein FliM AP033_21560 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AP033_21561 PF03748 Flagellar basal body-associated protein FliL AP033_21564 PF18269 T3SS EscN ATPase C-terminal domain AP033_21564 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP033_21565 PF02108 Flagellar assembly protein FliH AP033_21566 PF14841 FliG middle domain AP033_21566 PF01706 FliG C-terminal domain AP033_21566 PF14842 FliG N-terminal domain AP033_21567 PF01514 Secretory protein of YscJ/FliF family AP033_21567 PF08345 Flagellar M-ring protein C-terminal AP033_21568 PF02049 Flagellar hook-basal body complex protein FliE AP033_21569 PF02954 Bacterial regulatory protein, Fis family AP033_21569 PF00072 Response regulator receiver domain AP033_21569 PF00158 Sigma-54 interaction domain AP033_21570 PF13426 PAS domain AP033_21570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21570 PF00512 His Kinase A (phospho-acceptor) domain AP033_21570 PF08447 PAS fold AP033_21570 PF00989 PAS fold AP033_21570 PF13493 Domain of unknown function (DUF4118) AP033_21571 PF00158 Sigma-54 interaction domain AP033_21571 PF02954 Bacterial regulatory protein, Fis family AP033_21571 PF00072 Response regulator receiver domain AP033_21572 PF02561 Flagellar protein FliS AP033_21574 PF07196 Flagellin hook IN motif AP033_21574 PF07195 Flagellar hook-associated protein 2 C-terminus AP033_21574 PF02465 Flagellar hook-associated protein 2 N-terminus AP033_21575 PF03646 FlaG protein AP033_21576 PF00700 Bacterial flagellin C-terminal helical region AP033_21576 PF07196 Flagellin hook IN motif AP033_21576 PF00669 Bacterial flagellin N-terminal helical region AP033_21577 PF07196 Flagellin hook IN motif AP033_21577 PF00700 Bacterial flagellin C-terminal helical region AP033_21577 PF00669 Bacterial flagellin N-terminal helical region AP033_21578 PF07196 Flagellin hook IN motif AP033_21578 PF00700 Bacterial flagellin C-terminal helical region AP033_21578 PF00669 Bacterial flagellin N-terminal helical region AP033_21579 PF04261 Dyp-type peroxidase family AP033_21580 PF11143 Protein of unknown function (DUF2919) AP033_21583 PF03960 ArsC family AP033_21584 PF01546 Peptidase family M20/M25/M40 AP033_21584 PF07687 Peptidase dimerisation domain AP033_21585 PF02557 D-alanyl-D-alanine carboxypeptidase AP033_21587 PF06804 NlpB/DapX lipoprotein AP033_21588 PF00701 Dihydrodipicolinate synthetase family AP033_21590 PF00578 AhpC/TSA family AP033_21591 PF00672 HAMP domain AP033_21591 PF02743 Cache domain AP033_21591 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_21592 PF01594 AI-2E family transporter AP033_21594 PF13181 Tetratricopeptide repeat AP033_21594 PF01435 Peptidase family M48 AP033_21595 PF03960 ArsC family AP033_21596 PF03358 NADPH-dependent FMN reductase AP033_21599 PF00860 Permease family AP033_21600 PF04073 Aminoacyl-tRNA editing domain AP033_21601 PF02872 5'-nucleotidase, C-terminal domain AP033_21601 PF00149 Calcineurin-like phosphoesterase AP033_21602 PF00793 DAHP synthetase I family AP033_21603 PF13369 Transglutaminase-like superfamily AP033_21604 PF04247 Invasion gene expression up-regulator, SirB AP033_21605 PF13847 Methyltransferase domain AP033_21605 PF17827 PrmC N-terminal domain AP033_21606 PF03462 PCRF domain AP033_21606 PF00472 RF-1 domain AP033_21607 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AP033_21607 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AP033_21607 PF01488 Shikimate / quinate 5-dehydrogenase AP033_21608 PF03550 Outer membrane lipoprotein LolB AP033_21609 PF08544 GHMP kinases C terminal AP033_21609 PF00288 GHMP kinases N terminal domain AP033_21610 PF14572 Phosphoribosyl synthetase-associated domain AP033_21610 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AP033_21611 PF01195 Peptidyl-tRNA hydrolase AP033_21612 PF06071 Protein of unknown function (DUF933) AP033_21612 PF01926 50S ribosome-binding GTPase AP033_21629 PF00669 Bacterial flagellin N-terminal helical region AP033_21629 PF07196 Flagellin hook IN motif AP033_21629 PF00700 Bacterial flagellin C-terminal helical region AP033_21630 PF00700 Bacterial flagellin C-terminal helical region AP033_21630 PF07196 Flagellin hook IN motif AP033_21630 PF00669 Bacterial flagellin N-terminal helical region AP033_21632 PF07196 Flagellin hook IN motif AP033_21632 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP033_21633 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AP033_21633 PF10135 Rod binding protein AP033_21634 PF02119 Flagellar P-ring protein AP033_21635 PF02107 Flagellar L-ring protein AP033_21636 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP033_21636 PF00460 Flagella basal body rod protein AP033_21637 PF00460 Flagella basal body rod protein AP033_21637 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP033_21638 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP033_21638 PF00460 Flagella basal body rod protein AP033_21638 PF07559 Flagellar basal body protein FlaE AP033_21639 PF13860 FlgD Ig-like domain AP033_21639 PF13861 FlgD Tudor-like domain AP033_21639 PF03963 Flagellar hook capping protein - N-terminal region AP033_21640 PF00460 Flagella basal body rod protein AP033_21640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AP033_21641 PF00460 Flagella basal body rod protein AP033_21642 PF01739 CheR methyltransferase, SAM binding domain AP033_21642 PF03705 CheR methyltransferase, all-alpha domain AP033_21643 PF00072 Response regulator receiver domain AP033_21643 PF01584 CheW-like domain AP033_21650 PF00550 Phosphopantetheine attachment site AP033_21650 PF00501 AMP-binding enzyme AP033_21650 PF00668 Condensation domain AP033_21650 PF08242 Methyltransferase domain AP033_21651 PF04954 Siderophore-interacting protein AP033_21651 PF08021 Siderophore-interacting FAD-binding domain AP033_21652 PF07715 TonB-dependent Receptor Plug Domain AP033_21654 PF01389 OmpA-like transmembrane domain AP033_21654 PF00691 OmpA family AP033_21655 PF00749 tRNA synthetases class I (E and Q), catalytic domain AP033_21656 PF00403 Heavy-metal-associated domain AP033_21658 PF03173 Putative carbohydrate binding domain AP033_21658 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AP033_21658 PF00728 Glycosyl hydrolase family 20, catalytic domain AP033_21658 PF02838 Glycosyl hydrolase family 20, domain 2 AP033_21659 PF01963 TraB family AP033_21662 PF01713 Smr domain AP033_21663 PF00849 RNA pseudouridylate synthase AP033_21663 PF01479 S4 domain AP033_21664 PF00990 Diguanylate cyclase, GGDEF domain AP033_21664 PF08448 PAS fold AP033_21667 PF00586 AIR synthase related protein, N-terminal domain AP033_21667 PF02769 AIR synthase related protein, C-terminal domain AP033_21668 PF00551 Formyl transferase AP033_21669 PF13230 Glutamine amidotransferases class-II AP033_21670 PF13580 SIS domain AP033_21671 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AP033_21671 PF02770 Acyl-CoA dehydrogenase, middle domain AP033_21671 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AP033_21671 PF09317 Domain of unknown function (DUF1974) AP033_21673 PF00929 Exonuclease AP033_21674 PF00075 RNase H AP033_21675 PF08241 Methyltransferase domain AP033_21676 PF00753 Metallo-beta-lactamase superfamily AP033_21676 PF16123 Hydroxyacylglutathione hydrolase C-terminus AP033_21677 PF01464 Transglycosylase SLT domain AP033_21677 PF01476 LysM domain AP033_21678 PF01476 LysM domain AP033_21678 PF05257 CHAP domain AP033_21679 PF03372 Endonuclease/Exonuclease/phosphatase family AP033_21680 PF00543 Nitrogen regulatory protein P-II AP033_21681 PF05870 Phenolic acid decarboxylase (PAD) AP033_21682 PF00034 Cytochrome c AP033_21683 PF01171 PP-loop family AP033_21683 PF09179 TilS substrate binding domain AP033_21683 PF11734 TilS substrate C-terminal domain AP033_21684 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AP033_21685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AP033_21685 PF01336 OB-fold nucleic acid binding domain AP033_21685 PF02811 PHP domain AP033_21685 PF14579 Helix-hairpin-helix motif AP033_21685 PF07733 Bacterial DNA polymerase III alpha NTPase domain AP033_21686 PF01351 Ribonuclease HII AP033_21687 PF02684 Lipid-A-disaccharide synthetase AP033_21688 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AP033_21688 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_21689 PF07977 FabA-like domain AP033_21690 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_21690 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AP033_21691 PF03938 Outer membrane protein (OmpH-like) AP033_21692 PF07244 Surface antigen variable number repeat AP033_21692 PF01103 Surface antigen AP033_21693 PF02163 Peptidase family M50 AP033_21693 PF17820 PDZ domain AP033_21694 PF13288 DXP reductoisomerase C-terminal domain AP033_21694 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AP033_21694 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AP033_21696 PF01255 Putative undecaprenyl diphosphate synthase AP033_21697 PF01765 Ribosome recycling factor AP033_21698 PF00696 Amino acid kinase family AP033_21699 PF00889 Elongation factor TS AP033_21700 PF00318 Ribosomal protein S2 AP033_21701 PF00557 Metallopeptidase family M24 AP033_21702 PF01966 HD domain AP033_21702 PF08335 GlnD PII-uridylyltransferase AP033_21702 PF01909 Nucleotidyltransferase domain AP033_21703 PF11944 Protein of unknown function (DUF3461) AP033_21704 PF04608 Phosphatidylglycerophosphatase A AP033_21705 PF00586 AIR synthase related protein, N-terminal domain AP033_21705 PF02769 AIR synthase related protein, C-terminal domain AP033_21706 PF01029 NusB family AP033_21707 PF00885 6,7-dimethyl-8-ribityllumazine synthase AP033_21708 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AP033_21708 PF00925 GTP cyclohydrolase II AP033_21709 PF00677 Lumazine binding domain AP033_21710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AP033_21710 PF01872 RibD C-terminal domain AP033_21711 PF03477 ATP cone domain AP033_21712 PF00171 Aldehyde dehydrogenase family AP033_21713 PF01472 PUA domain AP033_21713 PF00696 Amino acid kinase family AP033_21714 PF07417 Sigma factor-binding transcriptional regulator Crl AP033_21716 PF00156 Phosphoribosyl transferase domain AP033_21717 PF00860 Permease family AP033_21718 PF01546 Peptidase family M20/M25/M40 AP033_21718 PF07687 Peptidase dimerisation domain AP033_21719 PF08443 RimK-like ATP-grasp domain AP033_21719 PF18030 RimK PreATP-grasp domain AP033_21720 PF08443 RimK-like ATP-grasp domain AP033_21720 PF18030 RimK PreATP-grasp domain AP033_21722 PF00209 Sodium:neurotransmitter symporter family AP033_21723 PF00990 Diguanylate cyclase, GGDEF domain AP033_21723 PF17158 Membrane-associated sensor, integral membrane domain AP033_21725 PF11798 IMS family HHH motif AP033_21725 PF00817 impB/mucB/samB family AP033_21727 PF02424 ApbE family AP033_21728 PF00970 Oxidoreductase FAD-binding domain AP033_21728 PF00111 2Fe-2S iron-sulfur cluster binding domain AP033_21728 PF00175 Oxidoreductase NAD-binding domain AP033_21729 PF02508 Rnf-Nqr subunit, membrane protein AP033_21730 PF02508 Rnf-Nqr subunit, membrane protein AP033_21731 PF04205 FMN-binding domain AP033_21732 PF03116 NQR2, RnfD, RnfE family AP033_21733 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AP033_21733 PF11973 NQRA C-terminal domain AP033_21734 PF01722 BolA-like protein AP033_21735 PF05175 Methyltransferase small domain AP033_21737 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AP033_21738 PF07690 Major Facilitator Superfamily AP033_21740 PF04545 Sigma-70, region 4 AP033_21740 PF04542 Sigma-70 region 2 AP033_21742 PF03502 Nucleoside-specific channel-forming protein, Tsx AP033_21743 PF02558 Ketopantoate reductase PanE/ApbA AP033_21743 PF08546 Ketopantoate reductase PanE/ApbA C terminal AP033_21744 PF01965 DJ-1/PfpI family AP033_21745 PF00266 Aminotransferase class-V AP033_21746 PF02657 Fe-S metabolism associated domain AP033_21747 PF00899 ThiF family AP033_21748 PF06725 3D domain AP033_21748 PF03562 MltA specific insert domain AP033_21750 PF00583 Acetyltransferase (GNAT) family AP033_21750 PF00696 Amino acid kinase family AP033_21752 PF13538 UvrD-like helicase C-terminal domain AP033_21753 PF13361 UvrD-like helicase C-terminal domain AP033_21753 PF00580 UvrD/REP helicase N-terminal domain AP033_21753 PF12705 PD-(D/E)XK nuclease superfamily AP033_21754 PF17946 RecC C-terminal domain AP033_21757 PF07130 YebG protein AP033_21758 PF14602 Hexapeptide repeat of succinyl-transferase AP033_21758 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AP033_21760 PF00583 Acetyltransferase (GNAT) family AP033_21761 PF02080 TrkA-C domain AP033_21761 PF18030 RimK PreATP-grasp domain AP033_21761 PF08443 RimK-like ATP-grasp domain AP033_21762 PF01544 CorA-like Mg2+ transporter protein AP033_21764 PF01588 Putative tRNA binding domain AP033_21765 PF00356 Bacterial regulatory proteins, lacI family AP033_21766 PF00703 Glycosyl hydrolases family 2 AP033_21766 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AP033_21766 PF16353 Domain of unknown function(DUF4981) AP033_21766 PF02929 Beta galactosidase small chain AP033_21766 PF02837 Glycosyl hydrolases family 2, sugar binding domain AP033_21768 PF00072 Response regulator receiver domain AP033_21769 PF00501 AMP-binding enzyme AP033_21770 PF03144 Elongation factor Tu domain 2 AP033_21770 PF03764 Elongation factor G, domain IV AP033_21770 PF00009 Elongation factor Tu GTP binding domain AP033_21770 PF14492 Elongation Factor G, domain II AP033_21770 PF00679 Elongation factor G C-terminus AP033_21771 PF18073 Rubredoxin metal binding domain AP033_21773 PF18429 Domain of unknown function (DUF5609) AP033_21775 PF01048 Phosphorylase superfamily AP033_21776 PF01676 Metalloenzyme superfamily AP033_21777 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AP033_21777 PF00591 Glycosyl transferase family, a/b domain AP033_21777 PF02885 Glycosyl transferase family, helical bundle domain AP033_21778 PF01791 DeoC/LacD family aldolase AP033_21779 PF07670 Nucleoside recognition AP033_21779 PF07662 Na+ dependent nucleoside transporter C-terminus AP033_21779 PF01773 Na+ dependent nucleoside transporter N-terminus AP033_21780 PF01026 TatD related DNase AP033_21782 PF03883 Peroxide stress protein YaaA AP033_21783 PF01235 Sodium:alanine symporter family AP033_21786 PF03167 Uracil DNA glycosylase superfamily AP033_21787 PF01261 Xylose isomerase-like TIM barrel AP033_21788 PF01228 Glycine radical AP033_21789 PF00291 Pyridoxal-phosphate dependent enzyme AP033_21789 PF14821 Threonine synthase N terminus AP033_21790 PF00288 GHMP kinases N terminal domain AP033_21790 PF08544 GHMP kinases C terminal AP033_21791 PF03447 Homoserine dehydrogenase, NAD binding domain AP033_21791 PF01842 ACT domain AP033_21791 PF00696 Amino acid kinase family AP033_21791 PF13840 ACT domain AP033_21791 PF00742 Homoserine dehydrogenase AP033_21793 PF03737 Aldolase/RraA AP033_21795 PF00486 Transcriptional regulatory protein, C terminal AP033_21795 PF00072 Response regulator receiver domain AP033_21796 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21796 PF00072 Response regulator receiver domain AP033_21796 PF00989 PAS fold AP033_21796 PF01627 Hpt domain AP033_21796 PF00512 His Kinase A (phospho-acceptor) domain AP033_21796 PF18415 Histidine kinase receptor ArcB trans-membrane domain AP033_21797 PF00360 Phytochrome region AP033_21797 PF01590 GAF domain AP033_21797 PF00563 EAL domain AP033_21797 PF00990 Diguanylate cyclase, GGDEF domain AP033_21798 PF16199 Radical_SAM C-terminal domain AP033_21798 PF04055 Radical SAM superfamily AP033_21799 PF04898 Glutamate synthase central domain AP033_21799 PF01645 Conserved region in glutamate synthase AP033_21799 PF00310 Glutamine amidotransferases class-II AP033_21799 PF01493 GXGXG motif AP033_21800 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AP033_21800 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_21801 PF00310 Glutamine amidotransferases class-II AP033_21801 PF01493 GXGXG motif AP033_21801 PF04898 Glutamate synthase central domain AP033_21801 PF01645 Conserved region in glutamate synthase AP033_21802 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AP033_21802 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_21804 PF01048 Phosphorylase superfamily AP033_21806 PF01497 Periplasmic binding protein AP033_21807 PF03458 UPF0126 domain AP033_21808 PF03466 LysR substrate binding domain AP033_21808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21809 PF01925 Sulfite exporter TauE/SafE AP033_21810 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AP033_21811 PF00005 ABC transporter AP033_21815 PF02142 MGS-like domain AP033_21815 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AP033_21815 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP033_21816 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AP033_21816 PF00117 Glutamine amidotransferase class-I AP033_21817 PF01113 Dihydrodipicolinate reductase, N-terminus AP033_21817 PF05173 Dihydrodipicolinate reductase, C-terminus AP033_21818 PF00293 NUDIX domain AP033_21819 PF02810 SEC-C motif AP033_21819 PF07517 SecA DEAD-like domain AP033_21819 PF01043 SecA preprotein cross-linking domain AP033_21819 PF07516 SecA Wing and Scaffold domain AP033_21821 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AP033_21822 PF00091 Tubulin/FtsZ family, GTPase domain AP033_21822 PF12327 FtsZ family, C-terminal domain AP033_21823 PF02491 SHS2 domain inserted in FTSA AP033_21824 PF03799 Cell division protein FtsQ AP033_21824 PF08478 POTRA domain, FtsQ-type AP033_21825 PF01225 Mur ligase family, catalytic domain AP033_21825 PF02875 Mur ligase family, glutamate ligase domain AP033_21825 PF08245 Mur ligase middle domain AP033_21826 PF04101 Glycosyltransferase family 28 C-terminal domain AP033_21826 PF03033 Glycosyltransferase family 28 N-terminal domain AP033_21827 PF01098 Cell cycle protein AP033_21828 PF08245 Mur ligase middle domain AP033_21828 PF02875 Mur ligase family, glutamate ligase domain AP033_21829 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AP033_21829 PF00953 Glycosyl transferase family 4 AP033_21830 PF08245 Mur ligase middle domain AP033_21830 PF02875 Mur ligase family, glutamate ligase domain AP033_21830 PF01225 Mur ligase family, catalytic domain AP033_21831 PF08245 Mur ligase middle domain AP033_21831 PF02875 Mur ligase family, glutamate ligase domain AP033_21831 PF01225 Mur ligase family, catalytic domain AP033_21832 PF03717 Penicillin-binding Protein dimerisation domain AP033_21832 PF00905 Penicillin binding protein transpeptidase domain AP033_21833 PF04999 Cell division protein FtsL AP033_21834 PF01795 MraW methylase family AP033_21835 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_21835 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP033_21836 PF00364 Biotin-requiring enzyme AP033_21836 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AP033_21836 PF02817 e3 binding domain AP033_21837 PF17831 Pyruvate dehydrogenase E1 component middle domain AP033_21837 PF00456 Transketolase, thiamine diphosphate binding domain AP033_21838 PF00392 Bacterial regulatory proteins, gntR family AP033_21838 PF07729 FCD domain AP033_21839 PF00149 Calcineurin-like phosphoesterase AP033_21839 PF02872 5'-nucleotidase, C-terminal domain AP033_21840 PF17768 RecJ OB domain AP033_21840 PF01368 DHH family AP033_21840 PF02272 DHHA1 domain AP033_21841 PF10411 Disulfide bond isomerase protein N-terminus AP033_21841 PF13098 Thioredoxin-like domain AP033_21842 PF00589 Phage integrase family AP033_21842 PF02899 Phage integrase, N-terminal SAM-like domain AP033_21843 PF00258 Flavodoxin AP033_21844 PF01510 N-acetylmuramoyl-L-alanine amidase AP033_21845 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AP033_21845 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AP033_21846 PF07963 Prokaryotic N-terminal methylation motif AP033_21846 PF00114 Pilin (bacterial filament) AP033_21848 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AP033_21848 PF00437 Type II/IV secretion system protein AP033_21849 PF00482 Type II secretion system (T2SS), protein F AP033_21850 PF06750 Bacterial Peptidase A24 N-terminal domain AP033_21850 PF01478 Type IV leader peptidase family AP033_21851 PF01121 Dephospho-CoA kinase AP033_21852 PF07072 Cell division protein AP033_21853 PF03884 DNA gyrase inhibitor YacG AP033_21854 PF03989 DNA gyrase C-terminal domain, beta-propeller AP033_21854 PF00521 DNA gyrase/topoisomerase IV, subunit A AP033_21855 PF01751 Toprim domain AP033_21855 PF00204 DNA gyrase B AP033_21855 PF00986 DNA gyrase B subunit, carboxyl terminus AP033_21855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21856 PF05728 Uncharacterised protein family (UPF0227) AP033_21857 PF00149 Calcineurin-like phosphoesterase AP033_21858 PF06853 Protein of unknown function (DUF1249) AP033_21859 PF00293 NUDIX domain AP033_21860 PF02321 Outer membrane efflux protein AP033_21861 PF01467 Cytidylyltransferase-like AP033_21861 PF00294 pfkB family carbohydrate kinase AP033_21862 PF08335 GlnD PII-uridylyltransferase AP033_21862 PF03710 Glutamate-ammonia ligase adenylyltransferase AP033_21863 PF02743 Cache domain AP033_21863 PF00672 HAMP domain AP033_21863 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_21865 PF01928 CYTH domain AP033_21866 PF01865 Protein of unknown function DUF47 AP033_21867 PF01384 Phosphate transporter family AP033_21868 PF08239 Bacterial SH3 domain AP033_21870 PF01471 Putative peptidoglycan binding domain AP033_21870 PF13401 AAA domain AP033_21871 PF12627 Probable RNA and SrmB- binding site of polymerase A AP033_21871 PF01743 Poly A polymerase head domain AP033_21871 PF01966 HD domain AP033_21872 PF03952 Enolase, N-terminal domain AP033_21872 PF00113 Enolase, C-terminal TIM barrel domain AP033_21873 PF06418 CTP synthase N-terminus AP033_21873 PF00117 Glutamine amidotransferase class-I AP033_21874 PF03819 MazG nucleotide pyrophosphohydrolase domain AP033_21875 PF13291 ACT domain AP033_21875 PF02824 TGS domain AP033_21875 PF04607 Region found in RelA / SpoT proteins AP033_21876 PF01938 TRAM domain AP033_21876 PF05958 tRNA (Uracil-5-)-methyltransferase AP033_21877 PF00072 Response regulator receiver domain AP033_21877 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AP033_21877 PF00672 HAMP domain AP033_21877 PF00512 His Kinase A (phospho-acceptor) domain AP033_21877 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_21877 PF01627 Hpt domain AP033_21878 PF00990 Diguanylate cyclase, GGDEF domain AP033_21881 PF01648 4'-phosphopantetheinyl transferase superfamily AP033_21882 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AP033_21883 PF11967 Recombination protein O N terminal AP033_21883 PF02565 Recombination protein O C terminal AP033_21884 PF07650 KH domain AP033_21884 PF01926 50S ribosome-binding GTPase AP033_21885 PF00035 Double-stranded RNA binding motif AP033_21885 PF14622 Ribonuclease-III-like AP033_21886 PF10502 Signal peptidase, peptidase S26 AP033_21887 PF00009 Elongation factor Tu GTP binding domain AP033_21887 PF03144 Elongation factor Tu domain 2 AP033_21887 PF06421 GTP-binding protein LepA C-terminus AP033_21887 PF00679 Elongation factor G C-terminus AP033_21889 PF17188 MucB/RseB C-terminal domain AP033_21889 PF03888 MucB/RseB N-terminal domain AP033_21890 PF03872 Anti sigma-E protein RseA, N-terminal domain AP033_21890 PF03873 Anti sigma-E protein RseA, C-terminal domain AP033_21891 PF08281 Sigma-70, region 4 AP033_21891 PF04542 Sigma-70 region 2 AP033_21892 PF00890 FAD binding domain AP033_21892 PF02910 Fumarate reductase flavoprotein C-term AP033_21894 PF03937 Flavinator of succinate dehydrogenase AP033_21897 PF01494 FAD binding domain AP033_21898 PF01494 FAD binding domain AP033_21899 PF03695 Uncharacterised protein family (UPF0149) AP033_21900 PF05164 Cell division protein ZapA AP033_21901 PF01812 5-formyltetrahydrofolate cyclo-ligase family AP033_21902 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AP033_21903 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP033_21903 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP033_21903 PF01842 ACT domain AP033_21904 PF10369 Small subunit of acetolactate synthase AP033_21905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP033_21905 PF00205 Thiamine pyrophosphate enzyme, central domain AP033_21905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP033_21906 PF00501 AMP-binding enzyme AP033_21907 PF03466 LysR substrate binding domain AP033_21907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_21909 PF01569 PAP2 superfamily AP033_21911 PF08502 LeuA allosteric (dimerisation) domain AP033_21911 PF00682 HMGL-like AP033_21912 PF00180 Isocitrate/isopropylmalate dehydrogenase AP033_21913 PF00330 Aconitase family (aconitate hydratase) AP033_21914 PF00694 Aconitase C-terminal domain AP033_21923 PF00072 Response regulator receiver domain AP033_21926 PF03739 Lipopolysaccharide export system permease LptF/LptG AP033_21927 PF03739 Lipopolysaccharide export system permease LptF/LptG AP033_21928 PF02789 Cytosol aminopeptidase family, N-terminal domain AP033_21928 PF00883 Cytosol aminopeptidase family, catalytic domain AP033_21929 PF04364 DNA polymerase III chi subunit, HolC AP033_21930 PF10458 Valyl tRNA synthetase tRNA binding arm AP033_21930 PF00133 tRNA synthetases class I (I, L, M and V) AP033_21930 PF08264 Anticodon-binding domain of tRNA AP033_21931 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AP033_21931 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP033_21932 PF00849 RNA pseudouridylate synthase AP033_21933 PF18339 RapA N-terminal Tudor like domain 1 AP033_21933 PF00176 SNF2 family N-terminal domain AP033_21933 PF12137 RNA polymerase recycling family C-terminal AP033_21933 PF00271 Helicase conserved C-terminal domain AP033_21933 PF18337 RapA N-terminal Tudor like domain AP033_21934 PF13638 PIN domain AP033_21934 PF02562 PhoH-like protein AP033_21935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AP033_21935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AP033_21936 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AP033_21936 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AP033_21937 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AP033_21937 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AP033_21938 PF01042 Endoribonuclease L-PSP AP033_21939 PF01553 Acyltransferase AP033_21940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AP033_21941 PF01722 BolA-like protein AP033_21943 PF05494 MlaC protein AP033_21944 PF02470 MlaD protein AP033_21945 PF02405 Permease MlaE AP033_21946 PF00005 ABC transporter AP033_21947 PF01699 Sodium/calcium exchanger protein AP033_21948 PF00571 CBS domain AP033_21948 PF01380 SIS domain AP033_21951 PF03968 OstA-like protein AP033_21952 PF12399 Branched-chain amino acid ATP-binding cassette transporter AP033_21952 PF00005 ABC transporter AP033_21953 PF00309 Sigma-54 factor, Activator interacting domain (AID) AP033_21953 PF04552 Sigma-54, DNA binding domain AP033_21953 PF04963 Sigma-54 factor, core binding domain AP033_21954 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AP033_21955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AP033_21956 PF03668 P-loop ATPase protein family AP033_21957 PF00381 PTS HPr component phosphorylation site AP033_21958 PF00571 CBS domain AP033_21958 PF01769 Divalent cation transporter AP033_21958 PF03448 MgtE intracellular N domain AP033_21959 PF01523 Putative modulator of DNA gyrase AP033_21960 PF04751 Protein of unknown function (DUF615) AP033_21961 PF00005 ABC transporter AP033_21962 PF00528 Binding-protein-dependent transport system inner membrane component AP033_21964 PF02441 Flavoprotein AP033_21965 PF02875 Mur ligase family, glutamate ligase domain AP033_21965 PF01225 Mur ligase family, catalytic domain AP033_21965 PF08245 Mur ligase middle domain AP033_21966 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AP033_21967 PF00719 Inorganic pyrophosphatase AP033_21968 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AP033_21969 PF04357 TamB, inner membrane protein subunit of TAM complex AP033_21970 PF07244 Surface antigen variable number repeat AP033_21970 PF17243 POTRA domain TamA domain 1 AP033_21970 PF01103 Surface antigen AP033_21971 PF01625 Peptide methionine sulfoxide reductase AP033_21972 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AP033_21973 PF10795 Protein of unknown function (DUF2607) AP033_21975 PF00005 ABC transporter AP033_21980 PF00009 Elongation factor Tu GTP binding domain AP033_21981 PF01507 Phosphoadenosine phosphosulfate reductase family AP033_21982 PF14824 Sirohaem biosynthesis protein central AP033_21982 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AP033_21982 PF10414 Sirohaem synthase dimerisation region AP033_21983 PF00149 Calcineurin-like phosphoesterase AP033_21983 PF02872 5'-nucleotidase, C-terminal domain AP033_21985 PF03880 DbpA RNA binding domain AP033_21985 PF00270 DEAD/DEAH box helicase AP033_21985 PF00271 Helicase conserved C-terminal domain AP033_21986 PF13673 Acetyltransferase (GNAT) domain AP033_21987 PF00892 EamA-like transporter family AP033_21988 PF04225 Opacity-associated protein A LysM-like domain AP033_21988 PF08525 Opacity-associated protein A N-terminal motif AP033_21989 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AP033_21989 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP033_21990 PF01797 Transposase IS200 like AP033_21992 PF01196 Ribosomal protein L17 AP033_21993 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AP033_21993 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AP033_21993 PF01000 RNA polymerase Rpb3/RpoA insert domain AP033_21994 PF00163 Ribosomal protein S4/S9 N-terminal domain AP033_21994 PF01479 S4 domain AP033_21995 PF00411 Ribosomal protein S11 AP033_21996 PF00416 Ribosomal protein S13/S18 AP033_21997 PF00444 Ribosomal protein L36 AP033_21998 PF00344 SecY translocase AP033_21999 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AP033_22000 PF00327 Ribosomal protein L30p/L7e AP033_22001 PF00333 Ribosomal protein S5, N-terminal domain AP033_22001 PF03719 Ribosomal protein S5, C-terminal domain AP033_22002 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AP033_22003 PF00347 Ribosomal protein L6 AP033_22004 PF00410 Ribosomal protein S8 AP033_22005 PF00253 Ribosomal protein S14p/S29e AP033_22006 PF00281 Ribosomal protein L5 AP033_22006 PF00673 ribosomal L5P family C-terminus AP033_22007 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AP033_22007 PF00467 KOW motif AP033_22008 PF00238 Ribosomal protein L14p/L23e AP033_22009 PF00366 Ribosomal protein S17 AP033_22010 PF00831 Ribosomal L29 protein AP033_22011 PF00252 Ribosomal protein L16p/L10e AP033_22012 PF00189 Ribosomal protein S3, C-terminal domain AP033_22012 PF07650 KH domain AP033_22013 PF00237 Ribosomal protein L22p/L17e AP033_22014 PF00203 Ribosomal protein S19 AP033_22015 PF00181 Ribosomal Proteins L2, RNA binding domain AP033_22015 PF03947 Ribosomal Proteins L2, C-terminal domain AP033_22016 PF00276 Ribosomal protein L23 AP033_22017 PF00573 Ribosomal protein L4/L1 family AP033_22018 PF00297 Ribosomal protein L3 AP033_22019 PF00338 Ribosomal protein S10p/S20e AP033_22020 PF00588 SpoU rRNA Methylase family AP033_22020 PF08032 RNA 2'-O ribose methyltransferase substrate binding AP033_22021 PF17876 Cold shock domain AP033_22021 PF08461 Ribonuclease R winged-helix domain AP033_22021 PF08206 Ribonuclease B OB domain AP033_22021 PF00575 S1 RNA binding domain AP033_22021 PF00773 RNB domain AP033_22022 PF00884 Sulfatase AP033_22022 PF11893 Domain of unknown function (DUF3413) AP033_22023 PF08238 Sel1 repeat AP033_22024 PF00709 Adenylosuccinate synthetase AP033_22025 PF01112 Asparaginase AP033_22026 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP033_22028 PF02254 TrkA-N domain AP033_22028 PF00999 Sodium/hydrogen exchanger family AP033_22029 PF00999 Sodium/hydrogen exchanger family AP033_22029 PF02254 TrkA-N domain AP033_22030 PF02525 Flavodoxin-like fold AP033_22031 PF00005 ABC transporter AP033_22031 PF12848 ABC transporter AP033_22033 PF00561 alpha/beta hydrolase fold AP033_22034 PF06794 Uncharacterised protein family (UPF0270) AP033_22035 PF00485 Phosphoribulokinase / Uridine kinase family AP033_22036 PF00027 Cyclic nucleotide-binding domain AP033_22036 PF13545 Crp-like helix-turn-helix domain AP033_22038 PF00171 Aldehyde dehydrogenase family AP033_22039 PF04958 Arginine N-succinyltransferase beta subunit AP033_22040 PF00202 Aminotransferase class-III AP033_22041 PF00117 Glutamine amidotransferase class-I AP033_22042 PF04055 Radical SAM superfamily AP033_22042 PF18693 TRAM domain AP033_22042 PF00919 Uncharacterized protein family UPF0004 AP033_22045 PF00579 tRNA synthetases class I (W and Y) AP033_22046 PF13419 Haloacid dehalogenase-like hydrolase AP033_22047 PF00834 Ribulose-phosphate 3 epimerase family AP033_22048 PF02086 D12 class N6 adenine-specific DNA methyltransferase AP033_22050 PF01761 3-dehydroquinate synthase AP033_22051 PF01202 Shikimate kinase AP033_22052 PF11741 AMIN domain AP033_22052 PF00263 Bacterial type II and III secretion system protein AP033_22052 PF03958 Bacterial type II/III secretion system short domain AP033_22052 PF07660 Secretin and TonB N terminus short domain AP033_22057 PF17092 Penicillin-binding protein OB-like domain AP033_22057 PF00912 Transglycosylase AP033_22057 PF00905 Penicillin binding protein transpeptidase domain AP033_22058 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_22058 PF03466 LysR substrate binding domain AP033_22059 PF00462 Glutaredoxin AP033_22059 PF08534 Redoxin AP033_22060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP033_22060 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_22062 PF00206 Lyase AP033_22062 PF14698 Argininosuccinate lyase C-terminal AP033_22063 PF00764 Arginosuccinate synthase AP033_22064 PF00696 Amino acid kinase family AP033_22065 PF01118 Semialdehyde dehydrogenase, NAD binding domain AP033_22065 PF02774 Semialdehyde dehydrogenase, dimerisation domain AP033_22066 PF07687 Peptidase dimerisation domain AP033_22066 PF01546 Peptidase family M20/M25/M40 AP033_22067 PF00311 Phosphoenolpyruvate carboxylase AP033_22069 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_22069 PF06426 Serine acetyltransferase, N-terminal AP033_22070 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AP033_22070 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AP033_22071 PF02556 Preprotein translocase subunit SecB AP033_22072 PF00581 Rhodanese-like domain AP033_22073 PF00152 tRNA synthetases class II (D, K and N) AP033_22074 PF00890 FAD binding domain AP033_22074 PF02910 Fumarate reductase flavoprotein C-term AP033_22075 PF13183 4Fe-4S dicluster domain AP033_22075 PF13085 2Fe-2S iron-sulfur cluster binding domain AP033_22076 PF02300 Fumarate reductase subunit C AP033_22077 PF02313 Fumarate reductase subunit D AP033_22078 PF01132 Elongation factor P (EF-P) OB domain AP033_22078 PF08207 Elongation factor P (EF-P) KOW-like domain AP033_22078 PF09285 Elongation factor P, C-terminal AP033_22079 PF04055 Radical SAM superfamily AP033_22081 PF00118 TCP-1/cpn60 chaperonin family AP033_22082 PF00166 Chaperonin 10 Kd subunit AP033_22083 PF08220 DeoR-like helix-turn-helix domain AP033_22083 PF00455 DeoR C terminal sensor domain AP033_22087 PF00121 Triosephosphate isomerase AP033_22089 PF03737 Aldolase/RraA AP033_22090 PF01040 UbiA prenyltransferase family AP033_22091 PF10431 C-terminal, D2-small domain, of ClpB protein AP033_22091 PF07724 AAA domain (Cdc48 subfamily) AP033_22091 PF00004 ATPase family associated with various cellular activities (AAA) AP033_22092 PF00227 Proteasome subunit AP033_22093 PF05036 Sporulation related domain AP033_22094 PF00356 Bacterial regulatory proteins, lacI family AP033_22095 PF00270 DEAD/DEAH box helicase AP033_22095 PF18074 Primosomal protein N C-terminal domain AP033_22095 PF17764 3′ DNA-binding domain (3′BD) AP033_22095 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AP033_22095 PF00271 Helicase conserved C-terminal domain AP033_22096 PF01197 Ribosomal protein L31 AP033_22097 PF00390 Malic enzyme, N-terminal domain AP033_22097 PF03949 Malic enzyme, NAD binding domain AP033_22098 PF01340 Met Apo-repressor, MetJ AP033_22099 PF01053 Cys/Met metabolism PLP-dependent enzyme AP033_22100 PF03447 Homoserine dehydrogenase, NAD binding domain AP033_22100 PF00696 Amino acid kinase family AP033_22100 PF00742 Homoserine dehydrogenase AP033_22101 PF02219 Methylenetetrahydrofolate reductase AP033_22102 PF06005 Cell division protein ZapB AP033_22103 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AP033_22104 PF00365 Phosphofructokinase AP033_22105 PF01545 Cation efflux family AP033_22105 PF16916 Dimerisation domain of Zinc Transporter AP033_22107 PF00486 Transcriptional regulatory protein, C terminal AP033_22107 PF00072 Response regulator receiver domain AP033_22108 PF16527 Two-component sensor protein CpxA, periplasmic domain AP033_22108 PF00512 His Kinase A (phospho-acceptor) domain AP033_22108 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_22108 PF00672 HAMP domain AP033_22109 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AP033_22109 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AP033_22110 PF00588 SpoU rRNA Methylase family AP033_22111 PF04186 FxsA cytoplasmic membrane protein AP033_22112 PF00990 Diguanylate cyclase, GGDEF domain AP033_22112 PF17158 Membrane-associated sensor, integral membrane domain AP033_22113 PF10415 Fumarase C C-terminus AP033_22113 PF00206 Lyase AP033_22114 PF03605 Anaerobic c4-dicarboxylate membrane transporter AP033_22115 PF03714 Bacterial pullanase-associated domain AP033_22115 PF17967 Pullulanase N2 domain AP033_22115 PF11852 Domain of unknown function (DUF3372) AP033_22115 PF18494 Pullulanase Ins domain AP033_22115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AP033_22116 PF11412 Disulphide bond corrector protein DsbC AP033_22116 PF02683 Cytochrome C biogenesis protein transmembrane region AP033_22117 PF00072 Response regulator receiver domain AP033_22117 PF00196 Bacterial regulatory proteins, luxR family AP033_22118 PF00999 Sodium/hydrogen exchanger family AP033_22118 PF02080 TrkA-C domain AP033_22118 PF03471 Transporter associated domain AP033_22120 PF00474 Sodium:solute symporter family AP033_22121 PF02592 Putative vitamin uptake transporter AP033_22122 PF00625 Guanylate kinase AP033_22123 PF01192 RNA polymerase Rpb6 AP033_22124 PF13291 ACT domain AP033_22124 PF04607 Region found in RelA / SpoT proteins AP033_22124 PF02824 TGS domain AP033_22125 PF17191 RecG wedge domain AP033_22125 PF00271 Helicase conserved C-terminal domain AP033_22125 PF00270 DEAD/DEAH box helicase AP033_22126 PF00860 Permease family AP033_22127 PF00672 HAMP domain AP033_22127 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_22127 PF00512 His Kinase A (phospho-acceptor) domain AP033_22128 PF00486 Transcriptional regulatory protein, C terminal AP033_22128 PF00072 Response regulator receiver domain AP033_22129 PF17152 Periplasmic sensor domain AP033_22129 PF00990 Diguanylate cyclase, GGDEF domain AP033_22130 PF03449 Transcription elongation factor, N-terminal AP033_22130 PF01272 Transcription elongation factor, GreA/GreB, C-term AP033_22131 PF16921 Tex protein YqgF-like domain AP033_22131 PF09371 Tex-like protein N-terminal domain AP033_22131 PF00575 S1 RNA binding domain AP033_22131 PF17674 HHH domain AP033_22133 PF00561 alpha/beta hydrolase fold AP033_22134 PF00156 Phosphoribosyl transferase domain AP033_22135 PF01106 NifU-like domain AP033_22135 PF01521 Iron-sulphur cluster biosynthesis AP033_22136 PF00293 NUDIX domain AP033_22137 PF00459 Inositol monophosphatase family AP033_22138 PF01203 Type II secretion system (T2SS), protein N AP033_22139 PF04612 Type II secretion system (T2SS), protein M AP033_22140 PF12693 GspL periplasmic domain AP033_22140 PF05134 Type II secretion system (T2SS), protein L AP033_22141 PF03934 Type II secretion system (T2SS), protein K AP033_22142 PF11612 Type II secretion system (T2SS), protein J AP033_22142 PF07963 Prokaryotic N-terminal methylation motif AP033_22143 PF02501 Type II secretion system (T2SS), protein I AP033_22143 PF07963 Prokaryotic N-terminal methylation motif AP033_22144 PF12019 Type II transport protein GspH AP033_22145 PF07963 Prokaryotic N-terminal methylation motif AP033_22145 PF08334 Type II secretion system (T2SS), protein G AP033_22146 PF00482 Type II secretion system (T2SS), protein F AP033_22147 PF00437 Type II/IV secretion system protein AP033_22148 PF03958 Bacterial type II/III secretion system short domain AP033_22148 PF00263 Bacterial type II and III secretion system protein AP033_22149 PF11356 Type II secretion system protein C AP033_22150 PF01479 S4 domain AP033_22151 PF01430 Hsp33 protein AP033_22152 PF01293 Phosphoenolpyruvate carboxykinase AP033_22154 PF09500 Putative thioesterase (yiiD_Cterm) AP033_22154 PF00583 Acetyltransferase (GNAT) family AP033_22155 PF02580 D-Tyr-tRNA(Tyr) deacylase AP033_22156 PF03631 Virulence factor BrkB AP033_22160 PF00120 Glutamine synthetase, catalytic domain AP033_22160 PF03951 Glutamine synthetase, beta-Grasp domain AP033_22162 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_22162 PF00512 His Kinase A (phospho-acceptor) domain AP033_22162 PF00989 PAS fold AP033_22163 PF00158 Sigma-54 interaction domain AP033_22163 PF00072 Response regulator receiver domain AP033_22163 PF02954 Bacterial regulatory protein, Fis family AP033_22164 PF00563 EAL domain AP033_22164 PF00990 Diguanylate cyclase, GGDEF domain AP033_22164 PF03707 Bacterial signalling protein N terminal repeat AP033_22164 PF13188 PAS domain AP033_22165 PF00962 Adenosine/AMP deaminase AP033_22179 PF01177 Asp/Glu/Hydantoin racemase AP033_22180 PF05922 Peptidase inhibitor I9 AP033_22180 PF00082 Subtilase family AP033_22180 PF04151 Bacterial pre-peptidase C-terminal domain AP033_22181 PF07715 TonB-dependent Receptor Plug Domain AP033_22181 PF00593 TonB dependent receptor AP033_22182 PF05958 tRNA (Uracil-5-)-methyltransferase AP033_22184 PF00440 Bacterial regulatory proteins, tetR family AP033_22185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP033_22185 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_22186 PF04542 Sigma-70 region 2 AP033_22186 PF04545 Sigma-70, region 4 AP033_22186 PF00140 Sigma-70 factor, region 1.2 AP033_22187 PF18075 FtsX extracellular domain AP033_22188 PF00005 ABC transporter AP033_22189 PF00448 SRP54-type protein, GTPase domain AP033_22189 PF02881 SRP54-type protein, helical bundle domain AP033_22195 PF00210 Ferritin-like domain AP033_22196 PF08668 HDOD domain AP033_22196 PF00563 EAL domain AP033_22197 PF01810 LysE type translocator AP033_22198 PF12146 Serine aminopeptidase, S33 AP033_22202 PF10442 FIST C domain AP033_22202 PF00563 EAL domain AP033_22202 PF00990 Diguanylate cyclase, GGDEF domain AP033_22202 PF08495 FIST N domain AP033_22203 PF13419 Haloacid dehalogenase-like hydrolase AP033_22204 PF00589 Phage integrase family AP033_22204 PF02899 Phage integrase, N-terminal SAM-like domain AP033_22205 PF04340 Protein of unknown function, DUF484 AP033_22206 PF01678 Diaminopimelate epimerase AP033_22207 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AP033_22207 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AP033_22208 PF01491 Frataxin-like domain AP033_22209 PF01295 Adenylate cyclase, class-I AP033_22209 PF12633 Adenylate cyclase NT domain AP033_22210 PF03900 Porphobilinogen deaminase, C-terminal domain AP033_22210 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AP033_22211 PF02602 Uroporphyrinogen-III synthase HemD AP033_22212 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AP033_22213 PF07219 HemY protein N-terminus AP033_22214 PF06969 HemN C-terminal domain AP033_22214 PF04055 Radical SAM superfamily AP033_22215 PF10675 Protein of unknown function (DUF2489) AP033_22216 PF04220 Der GTPase activator (YihI) AP033_22218 PF00034 Cytochrome c AP033_22219 PF01926 50S ribosome-binding GTPase AP033_22220 PF01612 3'-5' exonuclease AP033_22220 PF01367 5'-3' exonuclease, C-terminal SAM fold AP033_22220 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AP033_22220 PF00476 DNA polymerase family A AP033_22222 PF00490 Delta-aminolevulinic acid dehydratase AP033_22223 PF01026 TatD related DNase AP033_22224 PF00581 Rhodanese-like domain AP033_22225 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AP033_22225 PF01694 Rhomboid family AP033_22226 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_22226 PF02203 Tar ligand binding domain homologue AP033_22226 PF00672 HAMP domain AP033_22227 PF03748 Flagellar basal body-associated protein FliL AP033_22228 PF04345 Chorismate lyase AP033_22229 PF01040 UbiA prenyltransferase family AP033_22230 PF01553 Acyltransferase AP033_22231 PF01726 LexA DNA binding domain AP033_22231 PF00717 Peptidase S24-like AP033_22233 PF01554 MatE AP033_22234 PF00902 Sec-independent protein translocase protein (TatC) AP033_22235 PF02416 mttA/Hcf106 family AP033_22236 PF02416 mttA/Hcf106 family AP033_22237 PF03109 ABC1 family AP033_22238 PF02036 SCP-2 sterol transfer family AP033_22239 PF01209 ubiE/COQ5 methyltransferase family AP033_22240 PF02646 RmuC family AP033_22243 PF10625 Universal stress protein B (UspB) AP033_22244 PF00210 Ferritin-like domain AP033_22245 PF00582 Universal stress protein family AP033_22246 PF00892 EamA-like transporter family AP033_22248 PF04445 Putative SAM-dependent methyltransferase AP033_22249 PF00563 EAL domain AP033_22249 PF00990 Diguanylate cyclase, GGDEF domain AP033_22249 PF08448 PAS fold AP033_22250 PF01037 Lrp/AsnC ligand binding domain AP033_22252 PF07690 Major Facilitator Superfamily AP033_22253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_22253 PF03466 LysR substrate binding domain AP033_22254 PF01321 Creatinase/Prolidase N-terminal domain AP033_22254 PF00557 Metallopeptidase family M24 AP033_22254 PF00557 Metallopeptidase family M24 AP033_22254 PF01321 Creatinase/Prolidase N-terminal domain AP033_22255 PF04055 Radical SAM superfamily AP033_22255 PF06968 Biotin and Thiamin Synthesis associated domain AP033_22256 PF05690 Thiazole biosynthesis protein ThiG AP033_22257 PF02597 ThiS family AP033_22258 PF00899 ThiF family AP033_22259 PF02581 Thiamine monophosphate synthase AP033_22260 PF13667 ThiC-associated domain AP033_22260 PF01964 Radical SAM ThiC family AP033_22261 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AP033_22268 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_22270 PF08501 Shikimate dehydrogenase substrate binding domain AP033_22270 PF01488 Shikimate / quinate 5-dehydrogenase AP033_22270 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AP033_22271 PF01218 Coproporphyrinogen III oxidase AP033_22272 PF01300 Telomere recombination AP033_22273 PF00731 AIR carboxylase AP033_22274 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AP033_22274 PF02222 ATP-grasp domain AP033_22275 PF01396 Topoisomerase DNA binding C4 zinc finger AP033_22276 PF04361 Protein of unknown function (DUF494) AP033_22277 PF02481 DNA recombination-mediator protein A AP033_22277 PF17782 DprA winged helix domain AP033_22278 PF01476 LysM domain AP033_22279 PF01327 Polypeptide deformylase AP033_22280 PF00551 Formyl transferase AP033_22280 PF02911 Formyl transferase, C-terminal domain AP033_22281 PF01189 16S rRNA methyltransferase RsmB/F AP033_22281 PF01029 NusB family AP033_22282 PF02254 TrkA-N domain AP033_22282 PF02080 TrkA-C domain AP033_22283 PF02386 Cation transport protein AP033_22285 PF03006 Haemolysin-III related AP033_22286 PF07070 SpoOM protein AP033_22287 PF06288 Protein of unknown function (DUF1040) AP033_22288 PF12801 4Fe-4S binding domain AP033_22288 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AP033_22288 PF13746 4Fe-4S dicluster domain AP033_22289 PF01636 Phosphotransferase enzyme family AP033_22290 PF01323 DSBA-like thioredoxin domain AP033_22291 PF01553 Acyltransferase AP033_22292 PF01078 Magnesium chelatase, subunit ChlI AP033_22292 PF13335 Magnesium chelatase, subunit ChlI C-terminal AP033_22293 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AP033_22293 PF00205 Thiamine pyrophosphate enzyme, central domain AP033_22293 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AP033_22295 PF01063 Amino-transferase class IV AP033_22296 PF00920 Dehydratase family AP033_22297 PF00291 Pyridoxal-phosphate dependent enzyme AP033_22297 PF00585 C-terminal regulatory domain of Threonine dehydratase AP033_22298 PF08240 Alcohol dehydrogenase GroES-like domain AP033_22298 PF00107 Zinc-binding dehydrogenase AP033_22300 PF01206 Sulfurtransferase TusA AP033_22302 PF01169 Uncharacterized protein family UPF0016 AP033_22303 PF02091 Glycyl-tRNA synthetase alpha subunit AP033_22304 PF05746 DALR anticodon binding domain AP033_22304 PF02092 Glycyl-tRNA synthetase beta subunit AP033_22305 PF00155 Aminotransferase class I and II AP033_22306 PF00011 Hsp20/alpha crystallin family AP033_22309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_22309 PF18053 DNA gyrase B subunit insert domain AP033_22309 PF00986 DNA gyrase B subunit, carboxyl terminus AP033_22309 PF00204 DNA gyrase B AP033_22309 PF01751 Toprim domain AP033_22310 PF02463 RecF/RecN/SMC N terminal domain AP033_22311 PF00712 DNA polymerase III beta subunit, N-terminal domain AP033_22311 PF02767 DNA polymerase III beta subunit, central domain AP033_22311 PF02768 DNA polymerase III beta subunit, C-terminal domain AP033_22312 PF11638 DnaA N-terminal domain AP033_22312 PF00308 Bacterial dnaA protein AP033_22312 PF08299 Bacterial dnaA protein helix-turn-helix AP033_22313 PF00497 Bacterial extracellular solute-binding proteins, family 3 AP033_22314 PF00528 Binding-protein-dependent transport system inner membrane component AP033_22315 PF00005 ABC transporter AP033_22316 PF00468 Ribosomal protein L34 AP033_22317 PF00825 Ribonuclease P AP033_22318 PF02096 60Kd inner membrane protein AP033_22318 PF14849 YidC periplasmic domain AP033_22319 PF10396 GTP-binding protein TrmE N-terminus AP033_22319 PF12631 MnmE helical domain AP033_22319 PF01926 50S ribosome-binding GTPase AP033_22320 PF00258 Flavodoxin AP033_22321 PF01134 Glucose inhibited division protein A AP033_22321 PF13932 GidA associated domain AP033_22322 PF02527 rRNA small subunit methyltransferase G AP033_22323 PF13614 AAA domain AP033_22324 PF17762 HTH domain found in ParB protein AP033_22324 PF02195 ParB-like nuclease domain AP033_22325 PF03899 ATP synthase I chain AP033_22326 PF00119 ATP synthase A chain AP033_22327 PF00137 ATP synthase subunit C AP033_22328 PF00430 ATP synthase B/B' CF(0) AP033_22329 PF00213 ATP synthase delta (OSCP) subunit AP033_22330 PF00306 ATP synthase alpha/beta chain, C terminal domain AP033_22330 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP033_22330 PF02874 ATP synthase alpha/beta family, beta-barrel domain AP033_22331 PF00231 ATP synthase AP033_22332 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP033_22332 PF02874 ATP synthase alpha/beta family, beta-barrel domain AP033_22333 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AP033_22333 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AP033_22334 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_22334 PF12804 MobA-like NTP transferase domain AP033_22335 PF07690 Major Facilitator Superfamily AP033_22336 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_22336 PF03466 LysR substrate binding domain AP033_22337 PF02803 Thiolase, C-terminal domain AP033_22337 PF00108 Thiolase, N-terminal domain AP033_22338 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AP033_22338 PF00378 Enoyl-CoA hydratase/isomerase AP033_22338 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AP033_22339 PF01205 Uncharacterized protein family UPF0029 AP033_22339 PF09186 Domain of unknown function (DUF1949) AP033_22340 PF02386 Cation transport protein AP033_22341 PF12724 Flavodoxin domain AP033_22349 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AP033_22349 PF03466 LysR substrate binding domain AP033_22350 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AP033_22350 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AP033_22351 PF00873 AcrB/AcrD/AcrF family AP033_22352 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AP033_22353 PF00440 Bacterial regulatory proteins, tetR family AP033_22354 PF00580 UvrD/REP helicase N-terminal domain AP033_22354 PF13361 UvrD-like helicase C-terminal domain AP033_22355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AP033_22361 PF00005 ABC transporter AP033_22361 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AP033_22362 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AP033_22364 PF12911 N-terminal TM domain of oligopeptide transport permease C AP033_22364 PF00528 Binding-protein-dependent transport system inner membrane component AP033_22366 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AP033_22366 PF07992 Pyridine nucleotide-disulphide oxidoreductase AP033_22367 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AP033_22368 PF01432 Peptidase family M3 AP033_22369 PF13361 UvrD-like helicase C-terminal domain AP033_22369 PF00580 UvrD/REP helicase N-terminal domain AP033_22370 PF01810 LysE type translocator AP033_22371 PF12833 Helix-turn-helix domain AP033_22373 PF00892 EamA-like transporter family AP033_22374 PF00570 HRDC domain AP033_22374 PF09382 RQC domain AP033_22374 PF16124 RecQ zinc-binding AP033_22374 PF00271 Helicase conserved C-terminal domain AP033_22374 PF00270 DEAD/DEAH box helicase AP033_22377 PF00005 ABC transporter AP033_22377 PF00664 ABC transporter transmembrane region AP033_22378 PF07715 TonB-dependent Receptor Plug Domain AP033_22378 PF00593 TonB dependent receptor AP033_22379 PF00005 ABC transporter AP033_22380 PF01497 Periplasmic binding protein AP033_22381 PF01032 FecCD transport family AP033_22382 PF01418 Helix-turn-helix domain, rpiR family AP033_22382 PF01380 SIS domain AP033_22383 PF13580 SIS domain AP033_22384 PF00367 phosphotransferase system, EIIB AP033_22384 PF02378 Phosphotransferase system, EIIC AP033_22385 PF00267 Gram-negative porin AP033_22386 PF03350 Uncharacterized protein family, UPF0114 AP033_22387 PF08340 Domain of unknown function (DUF1732) AP033_22387 PF03755 YicC-like family, N-terminal region AP033_22388 PF01138 3' exoribonuclease family, domain 1 AP033_22388 PF03725 3' exoribonuclease family, domain 2 AP033_22389 PF00156 Phosphoribosyl transferase domain AP033_22390 PF03279 Bacterial lipid A biosynthesis acyltransferase AP033_22391 PF03279 Bacterial lipid A biosynthesis acyltransferase AP033_22392 PF00440 Bacterial regulatory proteins, tetR family AP033_22393 PF04127 DNA / pantothenate metabolism flavoprotein AP033_22393 PF02441 Flavoprotein AP033_22394 PF00672 HAMP domain AP033_22394 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_22394 PF02743 Cache domain AP033_22395 PF04002 RadC-like JAB domain AP033_22403 PF00717 Peptidase S24-like AP033_22404 PF11798 IMS family HHH motif AP033_22404 PF11799 impB/mucB/samB family C-terminal domain AP033_22404 PF13438 Domain of unknown function (DUF4113) AP033_22404 PF00817 impB/mucB/samB family AP033_22413 PF13737 Transposase DDE domain AP033_22415 PF01381 Helix-turn-helix AP033_22416 PF00830 Ribosomal L28 family AP033_22417 PF00471 Ribosomal protein L33 AP033_22419 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AP033_22419 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AP033_22419 PF06827 Zinc finger found in FPG and IleRS AP033_22420 PF01467 Cytidylyltransferase-like AP033_22421 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AP033_22422 PF00535 Glycosyl transferase family 2 AP033_22423 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AP033_22430 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AP033_22431 PF04488 Glycosyltransferase sugar-binding region containing DXD motif AP033_22433 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AP033_22436 PF01522 Polysaccharide deacetylase AP033_22436 PF00457 Glycosyl hydrolases family 11 AP033_22437 PF01370 NAD dependent epimerase/dehydratase family AP033_22438 PF00483 Nucleotidyl transferase AP033_22438 PF01050 Mannose-6-phosphate isomerase AP033_22439 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AP033_22439 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AP033_22439 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AP033_22439 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AP033_22440 PF16363 GDP-mannose 4,6 dehydratase AP033_22441 PF16363 GDP-mannose 4,6 dehydratase AP033_22442 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AP033_22445 PF00005 ABC transporter AP033_22445 PF14524 Wzt C-terminal domain AP033_22447 PF00501 AMP-binding enzyme AP033_22447 PF13193 AMP-binding enzyme C-terminal domain AP033_22448 PF00171 Aldehyde dehydrogenase family AP033_22448 PF00465 Iron-containing alcohol dehydrogenase AP033_22450 PF00132 Bacterial transferase hexapeptide (six repeats) AP033_22451 PF13808 DDE_Tnp_1-associated AP033_22451 PF01609 Transposase DDE domain AP033_22452 PF13808 DDE_Tnp_1-associated AP033_22452 PF01609 Transposase DDE domain AP033_22455 PF02719 Polysaccharide biosynthesis protein AP033_22456 PF01370 NAD dependent epimerase/dehydratase family AP033_22457 PF02397 Bacterial sugar transferase AP033_22458 PF10996 Beta-Casp domain AP033_22458 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AP033_22458 PF00753 Metallo-beta-lactamase superfamily AP033_22459 PF00924 Mechanosensitive ion channel AP033_22460 PF03167 Uracil DNA glycosylase superfamily AP033_22461 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AP033_22462 PF04222 Protein of unknown function (DUF416) AP033_22463 PF01238 Phosphomannose isomerase type I AP033_22464 PF00480 ROK family AP033_22465 PF00571 CBS domain AP033_22465 PF01595 Cyclin M transmembrane N-terminal domain AP033_22466 PF00216 Bacterial DNA-binding protein AP033_22468 PF02844 Phosphoribosylglycinamide synthetase, N domain AP033_22468 PF02843 Phosphoribosylglycinamide synthetase, C domain AP033_22468 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AP033_22469 PF02142 MGS-like domain AP033_22469 PF01808 AICARFT/IMPCHase bienzyme AP033_22470 PF13411 MerR HTH family regulatory protein AP033_22471 PF18500 CadC C-terminal domain 1 AP033_22471 PF00486 Transcriptional regulatory protein, C terminal AP033_22472 PF13520 Amino acid permease AP033_22473 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AP033_22473 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AP033_22473 PF01276 Orn/Lys/Arg decarboxylase, major domain AP033_22474 PF17200 Single Cache domain 2 AP033_22474 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_22474 PF00672 HAMP domain AP033_22476 PF00593 TonB dependent receptor AP033_22476 PF07715 TonB-dependent Receptor Plug Domain AP033_22477 PF01081 KDPG and KHG aldolase AP033_22478 PF02447 GntP family permease AP033_22479 PF01202 Shikimate kinase AP033_22480 PF00920 Dehydratase family AP033_22481 PF00356 Bacterial regulatory proteins, lacI family AP033_22481 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AP033_22482 PF02661 Fic/DOC family AP033_22482 PF13784 Fic/DOC family N-terminal AP033_22483 PF02954 Bacterial regulatory protein, Fis family AP033_22484 PF01207 Dihydrouridine synthase (Dus) AP033_22486 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AP033_22486 PF00289 Biotin carboxylase, N-terminal domain AP033_22486 PF02785 Biotin carboxylase C-terminal domain AP033_22487 PF00364 Biotin-requiring enzyme AP033_22488 PF01220 Dehydroquinase class II AP033_22489 PF13193 AMP-binding enzyme C-terminal domain AP033_22489 PF00501 AMP-binding enzyme AP033_22489 PF16177 Acetyl-coenzyme A synthetase N-terminus AP033_22492 PF12832 MFS_1 like family AP033_22493 PF09456 RcsC Alpha-Beta-Loop (ABL) AP033_22493 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AP033_22493 PF00512 His Kinase A (phospho-acceptor) domain AP033_22493 PF00072 Response regulator receiver domain AP033_22494 PF02541 Ppx/GppA phosphatase family AP033_22495 PF00271 Helicase conserved C-terminal domain AP033_22495 PF00270 DEAD/DEAH box helicase AP033_22496 PF00085 Thioredoxin AP033_22497 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AP033_22497 PF07497 Rho termination factor, RNA-binding domain AP033_22497 PF07498 Rho termination factor, N-terminal domain AP033_22499 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AP033_22500 PF00111 2Fe-2S iron-sulfur cluster binding domain AP033_22500 PF00970 Oxidoreductase FAD-binding domain AP033_22500 PF00175 Oxidoreductase NAD-binding domain AP033_22501 PF00175 Oxidoreductase NAD-binding domain AP033_22508 PF13091 PLD-like domain AP033_22510 PF01565 FAD binding domain AP033_22510 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AP033_22511 PF02237 Biotin protein ligase C terminal domain AP033_22511 PF08279 HTH domain AP033_22511 PF03099 Biotin/lipoate A/B protein ligase family AP033_22512 PF00485 Phosphoribulokinase / Uridine kinase family AP033_22517 PF03144 Elongation factor Tu domain 2 AP033_22517 PF00009 Elongation factor Tu GTP binding domain AP033_22517 PF03143 Elongation factor Tu C-terminal domain AP033_22518 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AP033_22519 PF02357 Transcription termination factor nusG AP033_22519 PF00467 KOW motif AP033_22520 PF03946 Ribosomal protein L11, N-terminal domain AP033_22520 PF00298 Ribosomal protein L11, RNA binding domain AP033_22521 PF00687 Ribosomal protein L1p/L10e family AP033_22522 PF00466 Ribosomal protein L10 AP033_22523 PF00542 Ribosomal protein L7/L12 C-terminal domain AP033_22523 PF16320 Ribosomal protein L7/L12 dimerisation domain AP033_22524 PF04560 RNA polymerase Rpb2, domain 7 AP033_22524 PF00562 RNA polymerase Rpb2, domain 6 AP033_22524 PF10385 RNA polymerase beta subunit external 1 domain AP033_22524 PF04563 RNA polymerase beta subunit AP033_22524 PF04561 RNA polymerase Rpb2, domain 2 AP033_22524 PF04565 RNA polymerase Rpb2, domain 3 AP033_22525 PF05000 RNA polymerase Rpb1, domain 4 AP033_22525 PF00623 RNA polymerase Rpb1, domain 2 AP033_22525 PF04983 RNA polymerase Rpb1, domain 3 AP033_22525 PF04997 RNA polymerase Rpb1, domain 1 AP033_22525 PF04998 RNA polymerase Rpb1, domain 5 AP033_22526 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AP033_22527 PF09297 NADH pyrophosphatase zinc ribbon domain AP033_22527 PF00293 NUDIX domain AP033_22528 PF01208 Uroporphyrinogen decarboxylase (URO-D) AP033_22529 PF00440 Bacterial regulatory proteins, tetR family AP033_22529 PF08360 QacR-like protein, C-terminal region AP033_22531 PF01551 Peptidase family M23 AP033_22532 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AP033_22532 PF01676 Metalloenzyme superfamily AP033_22534 PF00939 Sodium:sulfate symporter transmembrane region AP033_22535 PF02666 Phosphatidylserine decarboxylase AP033_22536 PF03193 RsgA GTPase AP033_22537 PF00929 Exonuclease AP033_22547 PF08331 Domain of unknown function (DUF1730) AP033_22548 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AP033_22549 PF01520 N-acetylmuramoyl-L-alanine amidase AP033_22550 PF08676 MutL C terminal dimerisation domain AP033_22550 PF01119 DNA mismatch repair protein, C-terminal domain AP033_22552 PF17209 Hfq protein AP033_22553 PF01926 50S ribosome-binding GTPase AP033_22553 PF13167 GTP-binding GTPase N-terminal AP033_22553 PF16360 GTP-binding GTPase Middle Region AP033_22554 PF12221 Bacterial membrane protein N terminal AP033_22554 PF01145 SPFH domain / Band 7 family AP033_22555 PF01145 SPFH domain / Band 7 family AP033_22556 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AP033_22557 PF04102 SlyX AP033_22559 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AP033_22559 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AP033_22560 PF13309 HTH domain AP033_22560 PF08348 YheO-like PAS domain AP033_22561 PF02635 DsrE/DsrF-like family AP033_22562 PF02635 DsrE/DsrF-like family AP033_22564 PF00164 Ribosomal protein S12/S23 AP033_22565 PF00177 Ribosomal protein S7p/S5e AP033_22566 PF03144 Elongation factor Tu domain 2 AP033_22566 PF14492 Elongation Factor G, domain II AP033_22566 PF03764 Elongation factor G, domain IV AP033_22566 PF00009 Elongation factor Tu GTP binding domain AP033_22566 PF00679 Elongation factor G C-terminus AP033_22567 PF03143 Elongation factor Tu C-terminal domain AP033_22567 PF03144 Elongation factor Tu domain 2 AP033_22567 PF00009 Elongation factor Tu GTP binding domain AP033_22568 PF04324 BFD-like [2Fe-2S] binding domain AP033_22569 PF00210 Ferritin-like domain AP033_22570 PF01250 Ribosomal protein S6 AP033_22571 PF00436 Single-strand binding protein family AP033_22572 PF01084 Ribosomal protein S18 AP033_22573 PF01281 Ribosomal protein L9, N-terminal domain AP033_22573 PF03948 Ribosomal protein L9, C-terminal domain AP033_22575 PF03796 DnaB-like helicase C terminal domain AP033_22575 PF00772 DnaB-like helicase N terminal domain AP033_22576 PF01168 Alanine racemase, N-terminal domain AP033_22576 PF00842 Alanine racemase, C-terminal domain AP033_22577 PF01894 Uncharacterised protein family UPF0047 AP033_22578 PF00342 Phosphoglucose isomerase AP033_22579 PF12706 Beta-lactamase superfamily domain AP033_22581 PF01475 Ferric uptake regulator family AP033_22582 PF01207 Dihydrouridine synthase (Dus) AP033_22583 PF09583 Phage shock protein G (Phageshock_PspG) AP033_22586 PF00258 Flavodoxin AP033_22586 PF00667 FAD binding domain AP033_22586 PF00175 Oxidoreductase NAD-binding domain AP033_22587 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AP033_22587 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AP033_22588 PF01507 Phosphoadenosine phosphosulfate reductase family AP033_22595 PF00999 Sodium/hydrogen exchanger family AP033_22596 PF02965 Vitamin B12 dependent methionine synthase, activation domain AP033_22596 PF02607 B12 binding domain AP033_22596 PF02310 B12 binding domain AP033_22596 PF02574 Homocysteine S-methyltransferase AP033_22596 PF00809 Pterin binding enzyme AP033_22597 PF01842 ACT domain AP033_22597 PF00696 Amino acid kinase family AP033_22598 PF00266 Aminotransferase class-V AP033_22600 PF17760 UvrA interaction domain AP033_22600 PF00005 ABC transporter AP033_22600 PF17755 UvrA DNA-binding domain AP033_22601 PF00483 Nucleotidyl transferase AP033_22602 PF00196 Bacterial regulatory proteins, luxR family AP033_22603 PF00436 Single-strand binding protein family AP033_22604 PF00990 Diguanylate cyclase, GGDEF domain AP033_22604 PF17157 Gammaproteobacterial periplasmic sensor domain AP033_22604 PF00563 EAL domain AP033_22608 PF11741 AMIN domain AP033_22608 PF00263 Bacterial type II and III secretion system protein AP033_22608 PF07660 Secretin and TonB N terminus short domain AP033_22608 PF03958 Bacterial type II/III secretion system short domain AP033_22609 PF13401 AAA domain AP033_22609 PF01471 Putative peptidoglycan binding domain AP033_22611 PF00437 Type II/IV secretion system protein AP033_22612 PF00482 Type II secretion system (T2SS), protein F AP033_22615 PF07963 Prokaryotic N-terminal methylation motif AP033_22615 PF00114 Pilin (bacterial filament) AP033_22622 PF04085 rod shape-determining protein MreC AP033_22623 PF04093 rod shape-determining protein MreD AP033_22624 PF02545 Maf-like protein AP033_22625 PF00575 S1 RNA binding domain AP033_22625 PF10150 Ribonuclease E/G family AP033_22626 PF13116 Protein of unknown function AP033_22626 PF13502 AsmA-like C-terminal region AP033_22627 PF00795 Carbon-nitrogen hydrolase AP033_22628 PF01523 Putative modulator of DNA gyrase AP033_22630 PF06877 Regulator of ribonuclease activity B AP033_22633 PF00582 Universal stress protein family AP033_22635 PF16868 NMT1-like family AP033_22636 PF02863 Arginine repressor, C-terminal domain AP033_22636 PF01316 Arginine repressor, DNA binding domain AP033_22637 PF00056 lactate/malate dehydrogenase, NAD binding domain AP033_22637 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AP033_22638 PF13520 Amino acid permease AP033_22639 PF00348 Polyprenyl synthetase AP033_22640 PF00829 Ribosomal prokaryotic L21 protein AP033_22641 PF01016 Ribosomal L27 protein AP033_22642 PF01018 GTP1/OBG AP033_22642 PF01926 50S ribosome-binding GTPase AP033_22643 PF06738 Putative threonine/serine exporter AP033_22644 PF12821 Threonine/Serine exporter, ThrE AP033_22645 PF00186 Dihydrofolate reductase AP033_22646 PF00149 Calcineurin-like phosphoesterase AP033_22647 PF04379 ApaG domain AP033_22648 PF00398 Ribosomal RNA adenine dimethylase AP033_22649 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AP033_22650 PF09312 SurA N-terminal domain AP033_22651 PF03968 OstA-like protein AP033_22651 PF04453 LPS transport system D AP033_22652 PF00226 DnaJ domain AP033_22652 PF05099 Tellurite resistance protein TerB AP033_22658 PF00672 HAMP domain AP033_22658 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AP033_22658 PF12729 Four helix bundle sensory module for signal transduction