AP033_10003 SM00100 Cyclic nucleotide-monophosphate binding domain AP033_10006 SM00354 helix_turn _helix lactose operon repressor AP033_10010 SM00382 ATPases associated with a variety of cellular activities AP033_10020 SM00382 ATPases associated with a variety of cellular activities AP033_10021 SM00382 ATPases associated with a variety of cellular activities AP033_10021 SM01086 C-terminal, D2-small domain, of ClpB protein AP033_10036 SM00052 Putative diguanylate phosphodiesterase AP033_10037 SM00450 Rhodanese Homology Domain AP033_10052 SM00422 helix_turn_helix, mercury resistance AP033_10055 SM00052 Putative diguanylate phosphodiesterase AP033_10055 SM00267 diguanylate cyclase AP033_10061 SM00267 diguanylate cyclase AP033_10062 SM00382 ATPases associated with a variety of cellular activities AP033_10066 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10066 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10072 SM00487 DEAD-like helicases superfamily AP033_10072 SM00490 helicase superfamily c-terminal domain AP033_10074 SM00257 Lysin motif AP033_10076 SM00422 helix_turn_helix, mercury resistance AP033_10080 SM00028 Tetratricopeptide repeats AP033_10081 SM00267 diguanylate cyclase AP033_10084 SM00245 tail specific protease AP033_10093 SM00014 Acid phosphatase homologues AP033_10097 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10097 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10100 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AP033_10100 SM00495 Chitin-binding domain type 3 AP033_10100 SM00636 AP033_10100 AP033_10111 SM00642 Alpha-amylase domain AP033_10114 SM00421 helix_turn_helix, Lux Regulon AP033_10116 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10116 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10116 SM01049 AP033_10116 AP033_10124 SM00470 ParB-like nuclease domain AP033_10129 SM01236 AP033_10129 AP033_10130 SM00822 AP033_10130 AP033_10132 SM00448 cheY-homologous receiver domain AP033_10132 SM00862 Transcriptional regulatory protein, C terminal AP033_10133 SM00387 Histidine kinase-like ATPases AP033_10133 SM00388 His Kinase A (phosphoacceptor) domain AP033_10135 SM00382 ATPases associated with a variety of cellular activities AP033_10140 SM00448 cheY-homologous receiver domain AP033_10141 SM00073 Histidine Phosphotransfer domain AP033_10141 SM00260 Two component signalling adaptor domain AP033_10141 SM00387 Histidine kinase-like ATPases AP033_10141 SM01231 AP033_10141 AP033_10142 SM00260 Two component signalling adaptor domain AP033_10143 SM00260 Two component signalling adaptor domain AP033_10144 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10144 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10145 SM00138 Methyltransferase, chemotaxis proteins AP033_10147 SM00448 cheY-homologous receiver domain AP033_10148 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10150 SM00331 Sigma factor PP2C-like phosphatases AP033_10150 SM00448 cheY-homologous receiver domain AP033_10152 SM00382 ATPases associated with a variety of cellular activities AP033_10153 SM00052 Putative diguanylate phosphodiesterase AP033_10153 SM00267 diguanylate cyclase AP033_10157 SM00421 helix_turn_helix, Lux Regulon AP033_10161 SM00342 helix_turn_helix, arabinose operon control protein AP033_10166 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10166 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10167 SM00344 helix_turn_helix ASNC type AP033_10175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10178 SM00342 helix_turn_helix, arabinose operon control protein AP033_10180 SM00450 Rhodanese Homology Domain AP033_10181 SM00347 helix_turn_helix multiple antibiotic resistance protein AP033_10186 SM00849 Metallo-beta-lactamase superfamily AP033_10195 SM00062 Bacterial periplasmic substrate-binding proteins AP033_10197 SM00382 ATPases associated with a variety of cellular activities AP033_10200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10203 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10203 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10205 SM00642 Alpha-amylase domain AP033_10208 SM00671 Sel1-like repeats. AP033_10212 SM01154 AP033_10212 AP033_10216 SM00342 helix_turn_helix, arabinose operon control protein AP033_10216 SM01009 AlkA N-terminal domain AP033_10226 SM00347 helix_turn_helix multiple antibiotic resistance protein AP033_10230 SM00342 helix_turn_helix, arabinose operon control protein AP033_10235 SM00382 ATPases associated with a variety of cellular activities AP033_10240 SM00487 DEAD-like helicases superfamily AP033_10240 SM00490 helicase superfamily c-terminal domain AP033_10242 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10251 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10252 SM00062 Bacterial periplasmic substrate-binding proteins AP033_10253 SM00382 ATPases associated with a variety of cellular activities AP033_10256 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10256 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10263 SM00267 diguanylate cyclase AP033_10268 SM00267 diguanylate cyclase AP033_10268 SM01079 AP033_10268 AP033_10271 SM00267 diguanylate cyclase AP033_10272 SM00347 helix_turn_helix multiple antibiotic resistance protein AP033_10273 SM00260 Two component signalling adaptor domain AP033_10273 SM00448 cheY-homologous receiver domain AP033_10275 SM00421 helix_turn_helix, Lux Regulon AP033_10277 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AP033_10280 SM00382 ATPases associated with a variety of cellular activities AP033_10286 SM00420 helix_turn_helix, Deoxyribose operon repressor AP033_10286 SM01134 AP033_10286 AP033_10287 SM00091 PAS domain AP033_10287 SM00267 diguanylate cyclase AP033_10289 SM00342 helix_turn_helix, arabinose operon control protein AP033_10292 SM00357 Cold shock protein domain AP033_10293 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_10298 SM00342 helix_turn_helix, arabinose operon control protein AP033_10301 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10301 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10307 SM00382 ATPases associated with a variety of cellular activities AP033_10313 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_10316 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10316 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10322 SM00849 Metallo-beta-lactamase superfamily AP033_10324 SM01350 AP033_10324 AP033_10327 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_10328 SM00481 DNA polymerase alpha chain like domain AP033_10336 SM00829 Enoylreductase AP033_10345 SM00530 Helix-turn-helix XRE-family like proteins AP033_10346 SM00530 Helix-turn-helix XRE-family like proteins AP033_10354 SM00357 Cold shock protein domain AP033_10359 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AP033_10361 SM00226 Low molecular weight phosphatase family AP033_10386 SM01007 Class II Aldolase and Adducin N-terminal domain AP033_10389 SM00420 helix_turn_helix, Deoxyribose operon repressor AP033_10389 SM01134 AP033_10389 AP033_10397 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_10403 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AP033_10403 SM00091 PAS domain AP033_10403 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10406 SM00642 Alpha-amylase domain AP033_10409 SM00382 ATPases associated with a variety of cellular activities AP033_10413 SM00387 Histidine kinase-like ATPases AP033_10414 SM00448 cheY-homologous receiver domain AP033_10414 SM00850 LytTr DNA-binding domain AP033_10417 SM00267 diguanylate cyclase AP033_10421 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_10424 SM01091 Transporter associated domain AP033_10425 SM01266 AP033_10425 AP033_10441 SM00883 Chaperonin 10 Kd subunit AP033_10442 SM00924 MgtE intracellular N domain AP033_10453 SM00357 Cold shock protein domain AP033_10453 SM00955 AP033_10453 AP033_10454 SM00487 DEAD-like helicases superfamily AP033_10454 SM00490 helicase superfamily c-terminal domain AP033_10455 SM00020 Trypsin-like serine protease AP033_10462 SM00857 Resolvase, N terminal domain AP033_10478 SM00354 helix_turn _helix lactose operon repressor AP033_10481 SM00387 Histidine kinase-like ATPases AP033_10481 SM00448 cheY-homologous receiver domain AP033_10488 SM00890 Domain of unknown function AP033_10489 SM00387 Histidine kinase-like ATPases AP033_10489 SM00388 His Kinase A (phosphoacceptor) domain AP033_10490 SM00448 cheY-homologous receiver domain AP033_10490 SM00862 Transcriptional regulatory protein, C terminal AP033_10494 SM00052 Putative diguanylate phosphodiesterase AP033_10497 SM00867 YceI-like domain AP033_10498 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_10506 SM00782 PhnA Zinc-Ribbon AP033_10512 SM00062 Bacterial periplasmic substrate-binding proteins AP033_10512 SM00267 diguanylate cyclase AP033_10516 SM00267 diguanylate cyclase AP033_10519 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AP033_10519 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AP033_10521 SM00387 Histidine kinase-like ATPases AP033_10521 SM00388 His Kinase A (phosphoacceptor) domain AP033_10522 SM00448 cheY-homologous receiver domain AP033_10522 SM00862 Transcriptional regulatory protein, C terminal AP033_10531 SM00881 CoA binding domain AP033_10546 SM00382 ATPases associated with a variety of cellular activities AP033_10556 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_10556 SM00866 AP033_10556 AP033_10558 SM00382 ATPases associated with a variety of cellular activities AP033_10571 SM00852 Probable molybdopterin binding domain AP033_10574 SM00450 Rhodanese Homology Domain AP033_10575 SM00636 AP033_10575 AP033_10578 SM00861 Transketolase, pyrimidine binding domain AP033_10596 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AP033_10598 SM00450 Rhodanese Homology Domain AP033_10600 SM00563 Phosphate acyltransferases AP033_10608 SM00354 helix_turn _helix lactose operon repressor AP033_10609 SM00640 Glycosyl hydrolases family 32 AP033_10612 SM00091 PAS domain AP033_10612 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10616 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10616 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10623 SM00354 helix_turn _helix lactose operon repressor AP033_10624 SM00421 helix_turn_helix, Lux Regulon AP033_10624 SM00448 cheY-homologous receiver domain AP033_10625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10625 SM00387 Histidine kinase-like ATPases AP033_10628 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AP033_10632 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_10633 SM00421 helix_turn_helix, Lux Regulon AP033_10633 SM00448 cheY-homologous receiver domain AP033_10634 SM00387 Histidine kinase-like ATPases AP033_10638 SM00382 ATPases associated with a variety of cellular activities AP033_10642 SM00822 AP033_10642 AP033_10647 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AP033_10647 SM00267 diguanylate cyclase AP033_10649 SM00495 Chitin-binding domain type 3 AP033_10649 SM00636 AP033_10649 AP033_10652 SM00448 cheY-homologous receiver domain AP033_10653 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10653 SM00387 Histidine kinase-like ATPases AP033_10653 SM00388 His Kinase A (phosphoacceptor) domain AP033_10658 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10658 SM00387 Histidine kinase-like ATPases AP033_10658 SM00388 His Kinase A (phosphoacceptor) domain AP033_10658 SM00448 cheY-homologous receiver domain AP033_10660 SM00851 MGS-like domain AP033_10667 SM00387 Histidine kinase-like ATPases AP033_10668 SM00989 AP033_10668 AP033_10672 SM00382 ATPases associated with a variety of cellular activities AP033_10683 SM00387 Histidine kinase-like ATPases AP033_10683 SM00388 His Kinase A (phosphoacceptor) domain AP033_10683 SM00448 cheY-homologous receiver domain AP033_10705 SM00062 Bacterial periplasmic substrate-binding proteins AP033_10705 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AP033_10706 SM00382 ATPases associated with a variety of cellular activities AP033_10708 SM00327 von Willebrand factor (vWF) type A domain AP033_10709 SM00382 ATPases associated with a variety of cellular activities AP033_10714 SM00487 DEAD-like helicases superfamily AP033_10714 SM00490 helicase superfamily c-terminal domain AP033_10718 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10718 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10721 SM00796 Allophanate hydrolase subunit 1 AP033_10722 SM00797 Allophanate hydrolase subunit 2 AP033_10724 SM00984 UDP binding domain AP033_10726 SM00382 ATPases associated with a variety of cellular activities AP033_10729 SM00052 Putative diguanylate phosphodiesterase AP033_10729 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AP033_10729 SM00267 diguanylate cyclase AP033_10731 SM00271 DnaJ molecular chaperone homology domain AP033_10747 SM01321 AP033_10747 AP033_10798 SM00990 AP033_10798 AP033_10815 SM00530 Helix-turn-helix XRE-family like proteins AP033_10824 SM00871 Bacterial transcription activator, effector binding domain AP033_10829 SM01034 Sensors of blue-light using FAD AP033_10851 SM00360 RNA recognition motif AP033_10852 SM00360 RNA recognition motif AP033_10859 SM00360 RNA recognition motif AP033_10868 SM01034 Sensors of blue-light using FAD AP033_10872 SM00953 AP033_10872 AP033_10893 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AP033_10932 SM00530 Helix-turn-helix XRE-family like proteins AP033_10942 SM00530 Helix-turn-helix XRE-family like proteins AP033_10946 SM01321 AP033_10946 AP033_10948 SM01057 Eukaryotic-type carbonic anhydrase AP033_10951 SM00936 Penicillin-binding protein 5, C-terminal domain AP033_10953 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10953 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10955 SM00342 helix_turn_helix, arabinose operon control protein AP033_10957 SM00422 helix_turn_helix, mercury resistance AP033_10962 SM00387 Histidine kinase-like ATPases AP033_10962 SM00388 His Kinase A (phosphoacceptor) domain AP033_10963 SM00448 cheY-homologous receiver domain AP033_10963 SM00862 Transcriptional regulatory protein, C terminal AP033_10967 SM00642 Alpha-amylase domain AP033_10970 SM00420 helix_turn_helix, Deoxyribose operon repressor AP033_10970 SM01134 AP033_10970 AP033_10973 SM01007 Class II Aldolase and Adducin N-terminal domain AP033_10975 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AP033_10978 SM00448 cheY-homologous receiver domain AP033_10978 SM00862 Transcriptional regulatory protein, C terminal AP033_10979 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10979 SM00387 Histidine kinase-like ATPases AP033_10979 SM00388 His Kinase A (phosphoacceptor) domain AP033_10985 SM00342 helix_turn_helix, arabinose operon control protein AP033_10986 SM00382 ATPases associated with a variety of cellular activities AP033_10992 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AP033_10995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_10995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_10996 SM00458 Ricin-type beta-trefoil AP033_10998 SM00267 diguanylate cyclase AP033_11002 SM00387 Histidine kinase-like ATPases AP033_11003 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_11007 SM00487 DEAD-like helicases superfamily AP033_11007 SM00490 helicase superfamily c-terminal domain AP033_11008 SM00974 AP033_11008 AP033_11009 SM01240 AP033_11009 AP033_11016 SM00448 cheY-homologous receiver domain AP033_11020 SM00357 Cold shock protein domain AP033_11022 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AP033_11022 SM00382 ATPases associated with a variety of cellular activities AP033_11028 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_11028 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_11032 SM00327 von Willebrand factor (vWF) type A domain AP033_11033 SM00028 Tetratricopeptide repeats AP033_11036 SM00357 Cold shock protein domain AP033_11037 SM00267 diguanylate cyclase AP033_11056 SM00382 ATPases associated with a variety of cellular activities AP033_11056 SM00448 cheY-homologous receiver domain AP033_11057 SM00091 PAS domain AP033_11057 SM00387 Histidine kinase-like ATPases AP033_11057 SM00388 His Kinase A (phosphoacceptor) domain AP033_11058 SM00495 Chitin-binding domain type 3 AP033_20002 SM00478 endonuclease III AP033_20002 SM00525 AP033_20002 AP033_20005 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_20008 SM01152 AP033_20008 AP033_20012 SM00382 ATPases associated with a variety of cellular activities AP033_20014 SM00421 helix_turn_helix, Lux Regulon AP033_20016 SM00732 Likely ribonuclease with RNase H fold. AP033_20021 SM00731 SprT homologues. AP033_20023 SM00861 Transketolase, pyrimidine binding domain AP033_20026 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_20035 SM00420 helix_turn_helix, Deoxyribose operon repressor AP033_20035 SM01134 AP033_20035 AP033_20038 SM00563 Phosphate acyltransferases AP033_20041 SM00400 zinc finger AP033_20041 SM00493 AP033_20041 AP033_20041 SM00766 DNA primase DnaG DnaB-binding AP033_20046 SM01207 AP033_20046 AP033_20047 SM00905 Dihydroneopterin aldolase AP033_20056 SM00257 Lysin motif AP033_20058 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AP033_20058 SM00534 ATPase domain of DNA mismatch repair MUTS family AP033_20063 SM00382 ATPases associated with a variety of cellular activities AP033_20065 SM00382 ATPases associated with a variety of cellular activities AP033_20067 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AP033_20081 SM00829 Enoylreductase AP033_20086 SM01091 Transporter associated domain AP033_20089 SM00382 ATPases associated with a variety of cellular activities AP033_20089 SM00962 SRP54-type protein, GTPase domain AP033_20089 SM00963 SRP54-type protein, helical bundle domain AP033_20094 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AP033_20095 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AP033_20105 SM00749 bacterial OsmY and nodulation domain AP033_20112 SM00947 Carbonic anhydrase AP033_20114 SM00382 ATPases associated with a variety of cellular activities AP033_20124 SM00487 DEAD-like helicases superfamily AP033_20124 SM00490 helicase superfamily c-terminal domain AP033_20124 SM00847 Helicase associated domain (HA2) Add an annotation AP033_20129 SM00938 Nitrogen regulatory protein P-II AP033_20133 SM00382 ATPases associated with a variety of cellular activities AP033_20135 SM01068 Putative carbohydrate binding domain AP033_20139 SM00382 ATPases associated with a variety of cellular activities AP033_20140 SM00382 ATPases associated with a variety of cellular activities AP033_20144 SM00091 PAS domain AP033_20144 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20144 SM00387 Histidine kinase-like ATPases AP033_20144 SM00388 His Kinase A (phosphoacceptor) domain AP033_20144 SM00448 cheY-homologous receiver domain AP033_20153 SM00363 S4 RNA-binding domain AP033_20157 SM01103 AP033_20157 AP033_20159 SM00382 ATPases associated with a variety of cellular activities AP033_20167 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_20172 SM01387 AP033_20172 AP033_20173 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_20173 SM00322 K homology RNA-binding domain AP033_20174 SM00028 Tetratricopeptide repeats AP033_20175 SM00347 helix_turn_helix multiple antibiotic resistance protein AP033_20179 SM00052 Putative diguanylate phosphodiesterase AP033_20179 SM00091 PAS domain AP033_20179 SM00267 diguanylate cyclase AP033_20184 SM00052 Putative diguanylate phosphodiesterase AP033_20184 SM00267 diguanylate cyclase AP033_20186 SM00487 DEAD-like helicases superfamily AP033_20186 SM00490 helicase superfamily c-terminal domain AP033_20189 SM00937 AP033_20189 AP033_20191 SM00382 ATPases associated with a variety of cellular activities AP033_20194 SM00927 DNA mismatch repair enzyme MutH AP033_20196 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AP033_20202 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AP033_20205 SM00904 Riboflavin kinase AP033_20216 SM00448 cheY-homologous receiver domain AP033_20216 SM00850 LytTr DNA-binding domain AP033_20219 SM00830 Chorismate mutase type II AP033_20221 SM00382 ATPases associated with a variety of cellular activities AP033_20225 SM00052 Putative diguanylate phosphodiesterase AP033_20225 SM00267 diguanylate cyclase AP033_20227 SM00830 Chorismate mutase type II AP033_20230 SM00363 S4 RNA-binding domain AP033_20232 SM00382 ATPases associated with a variety of cellular activities AP033_20232 SM01086 C-terminal, D2-small domain, of ClpB protein AP033_20243 SM00448 cheY-homologous receiver domain AP033_20243 SM00862 Transcriptional regulatory protein, C terminal AP033_20244 SM00091 PAS domain AP033_20244 SM00387 Histidine kinase-like ATPases AP033_20244 SM00388 His Kinase A (phosphoacceptor) domain AP033_20250 SM00382 ATPases associated with a variety of cellular activities AP033_20258 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_20261 SM01323 AP033_20261 AP033_20270 SM00271 DnaJ molecular chaperone homology domain AP033_20275 SM00562 AP033_20275 AP033_20277 SM00530 Helix-turn-helix XRE-family like proteins AP033_20281 SM00564 beta-propeller repeat AP033_20282 SM00382 ATPases associated with a variety of cellular activities AP033_20286 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_20286 SM01240 AP033_20286 AP033_20288 SM00495 Chitin-binding domain type 3 AP033_20298 SM00382 ATPases associated with a variety of cellular activities AP033_20301 SM00849 Metallo-beta-lactamase superfamily AP033_20307 SM00448 cheY-homologous receiver domain AP033_20308 SM00091 PAS domain AP033_20308 SM00387 Histidine kinase-like ATPases AP033_20313 SM00764 Citrate lyase ligase C-terminal domain AP033_20339 SM00530 Helix-turn-helix XRE-family like proteins AP033_20344 SM00060 Fibronectin type 3 domain AP033_20345 SM00247 Beta/gamma crystallins AP033_20348 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20349 SM00862 Transcriptional regulatory protein, C terminal AP033_20362 SM00342 helix_turn_helix, arabinose operon control protein AP033_20364 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20364 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20370 SM01276 AP033_20370 AP033_20382 SM00271 DnaJ molecular chaperone homology domain AP033_20391 SM00062 Bacterial periplasmic substrate-binding proteins AP033_20392 SM01211 AP033_20392 AP033_20393 SM01321 AP033_20393 AP033_20409 SM00861 Transketolase, pyrimidine binding domain AP033_20414 SM00981 AP033_20414 AP033_20417 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AP033_20417 SM00475 5'-3' exonuclease AP033_20419 SM00267 diguanylate cyclase AP033_20420 SM00028 Tetratricopeptide repeats AP033_20426 SM00382 ATPases associated with a variety of cellular activities AP033_20426 SM00930 AP033_20426 AP033_20428 SM00354 helix_turn _helix lactose operon repressor AP033_20430 SM00642 Alpha-amylase domain AP033_20437 SM00226 Low molecular weight phosphatase family AP033_20439 SM00984 UDP binding domain AP033_20450 SM00710 Parallel beta-helix repeats AP033_20463 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_20466 SM00936 Penicillin-binding protein 5, C-terminal domain AP033_20477 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_20477 SM01091 Transporter associated domain AP033_20480 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_20487 SM00771 ZipA, C-terminal domain (FtsZ-binding) AP033_20488 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AP033_20488 SM00292 breast cancer carboxy-terminal domain AP033_20488 SM00532 Ligase N family AP033_20491 SM00422 helix_turn_helix, mercury resistance AP033_20493 SM00244 prohibitin homologues AP033_20501 SM00862 Transcriptional regulatory protein, C terminal AP033_20502 SM00387 Histidine kinase-like ATPases AP033_20506 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AP033_20506 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AP033_20521 SM00479 AP033_20521 AP033_20525 SM00478 endonuclease III AP033_20525 SM00525 AP033_20525 AP033_20527 SM00900 AP033_20527 AP033_20533 SM00487 DEAD-like helicases superfamily AP033_20533 SM00490 helicase superfamily c-terminal domain AP033_20534 SM00382 ATPases associated with a variety of cellular activities AP033_20534 SM00448 cheY-homologous receiver domain AP033_20537 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_20538 SM00852 Probable molybdopterin binding domain AP033_20542 SM00267 diguanylate cyclase AP033_20543 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_20553 SM00226 Low molecular weight phosphatase family AP033_20562 SM00448 cheY-homologous receiver domain AP033_20566 SM00382 ATPases associated with a variety of cellular activities AP033_20568 SM00493 AP033_20568 AP033_20574 SM00344 helix_turn_helix ASNC type AP033_20579 SM00062 Bacterial periplasmic substrate-binding proteins AP033_20579 SM00267 diguanylate cyclase AP033_20580 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AP033_20581 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_20584 SM00495 Chitin-binding domain type 3 AP033_20584 SM00636 AP033_20584 AP033_20588 SM00342 helix_turn_helix, arabinose operon control protein AP033_20592 SM00448 cheY-homologous receiver domain AP033_20593 SM00448 cheY-homologous receiver domain AP033_20595 SM00387 Histidine kinase-like ATPases AP033_20595 SM00388 His Kinase A (phosphoacceptor) domain AP033_20596 SM00387 Histidine kinase-like ATPases AP033_20597 SM00052 Putative diguanylate phosphodiesterase AP033_20597 SM00448 cheY-homologous receiver domain AP033_20598 SM00448 cheY-homologous receiver domain AP033_20599 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20599 SM00387 Histidine kinase-like ATPases AP033_20604 SM00382 ATPases associated with a variety of cellular activities AP033_20605 SM00382 ATPases associated with a variety of cellular activities AP033_20613 SM00382 ATPases associated with a variety of cellular activities AP033_20614 SM00267 diguanylate cyclase AP033_20618 SM00382 ATPases associated with a variety of cellular activities AP033_20621 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_20621 SM00876 Biotin and Thiamin Synthesis associated domain AP033_20639 SM00528 Domain in histone-like proteins of HNS family AP033_20651 SM00357 Cold shock protein domain AP033_20653 SM00382 ATPases associated with a variety of cellular activities AP033_20653 SM01086 C-terminal, D2-small domain, of ClpB protein AP033_20664 SM00448 cheY-homologous receiver domain AP033_20665 SM00387 Histidine kinase-like ATPases AP033_20683 SM00481 DNA polymerase alpha chain like domain AP033_20685 SM00363 S4 RNA-binding domain AP033_20686 SM00382 ATPases associated with a variety of cellular activities AP033_20687 SM00382 ATPases associated with a variety of cellular activities AP033_20691 SM00267 diguanylate cyclase AP033_20694 SM00919 Malic enzyme, NAD binding domain AP033_20694 SM01274 AP033_20694 AP033_20699 SM00271 DnaJ molecular chaperone homology domain AP033_20699 SM00671 Sel1-like repeats. AP033_20705 SM00020 Trypsin-like serine protease AP033_20711 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_20711 SM00866 AP033_20711 AP033_20714 SM00841 Elongation factor P, C-terminal AP033_20714 SM01185 AP033_20714 AP033_20716 SM00052 Putative diguanylate phosphodiesterase AP033_20717 SM00486 DNA polymerase type-B family AP033_20718 SM00421 helix_turn_helix, Lux Regulon AP033_20718 SM00448 cheY-homologous receiver domain AP033_20719 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AP033_20719 SM00465 GIY-YIG type nucleases (URI domain) AP033_20725 SM00267 diguanylate cyclase AP033_20728 SM00873 B3/4 domain AP033_20728 SM00874 tRNA synthetase B5 domain AP033_20728 SM00896 Ferredoxin-fold anticodon binding domain AP033_20729 SM00411 bacterial (prokaryotic) histone like domain AP033_20744 SM00855 Phosphoglycerate mutase family AP033_20747 SM00382 ATPases associated with a variety of cellular activities AP033_20750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20750 SM01049 AP033_20750 AP033_20753 SM00852 Probable molybdopterin binding domain AP033_20759 SM00434 DNA Topoisomerase IV AP033_20760 SM00450 Rhodanese Homology Domain AP033_20761 SM00342 helix_turn_helix, arabinose operon control protein AP033_20771 SM00849 Metallo-beta-lactamase superfamily AP033_20777 SM00387 Histidine kinase-like ATPases AP033_20777 SM01049 AP033_20777 AP033_20778 SM00421 helix_turn_helix, Lux Regulon AP033_20778 SM00448 cheY-homologous receiver domain AP033_20779 SM00347 helix_turn_helix multiple antibiotic resistance protein AP033_20781 SM00495 Chitin-binding domain type 3 AP033_20787 SM00354 helix_turn _helix lactose operon repressor AP033_20790 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20791 SM00479 AP033_20791 AP033_20792 SM00100 Cyclic nucleotide-monophosphate binding domain AP033_20792 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_20794 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20794 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_20797 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20797 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20807 SM00091 PAS domain AP033_20807 SM00382 ATPases associated with a variety of cellular activities AP033_20811 SM01005 Alanine racemase, C-terminal domain AP033_20812 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20812 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20814 SM00387 Histidine kinase-like ATPases AP033_20815 SM00448 cheY-homologous receiver domain AP033_20818 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20818 SM00387 Histidine kinase-like ATPases AP033_20818 SM00388 His Kinase A (phosphoacceptor) domain AP033_20819 SM00448 cheY-homologous receiver domain AP033_20819 SM00862 Transcriptional regulatory protein, C terminal AP033_20824 SM00382 ATPases associated with a variety of cellular activities AP033_20831 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_20831 SM00895 AP033_20831 AP033_20844 SM00448 cheY-homologous receiver domain AP033_20844 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_20845 SM00073 Histidine Phosphotransfer domain AP033_20845 SM00091 PAS domain AP033_20845 SM00387 Histidine kinase-like ATPases AP033_20845 SM00388 His Kinase A (phosphoacceptor) domain AP033_20845 SM00448 cheY-homologous receiver domain AP033_20847 SM00267 diguanylate cyclase AP033_20848 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AP033_20852 SM00382 ATPases associated with a variety of cellular activities AP033_20855 SM00062 Bacterial periplasmic substrate-binding proteins AP033_20861 SM00028 Tetratricopeptide repeats AP033_20861 SM00267 diguanylate cyclase AP033_20864 SM00267 diguanylate cyclase AP033_20866 SM00267 diguanylate cyclase AP033_20870 SM00267 diguanylate cyclase AP033_20870 SM01079 AP033_20870 AP033_20871 SM00479 AP033_20871 AP033_20875 SM00382 ATPases associated with a variety of cellular activities AP033_20875 SM00487 DEAD-like helicases superfamily AP033_20875 SM00490 helicase superfamily c-terminal domain AP033_20875 SM00847 Helicase associated domain (HA2) Add an annotation AP033_20883 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20884 SM00448 cheY-homologous receiver domain AP033_20886 SM00073 Histidine Phosphotransfer domain AP033_20886 SM00260 Two component signalling adaptor domain AP033_20886 SM00387 Histidine kinase-like ATPases AP033_20886 SM01231 AP033_20886 AP033_20887 SM00448 cheY-homologous receiver domain AP033_20888 SM00138 Methyltransferase, chemotaxis proteins AP033_20890 SM00448 cheY-homologous receiver domain AP033_20891 SM00260 Two component signalling adaptor domain AP033_20892 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20893 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20893 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20894 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AP033_20894 SM00091 PAS domain AP033_20894 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20895 SM00487 DEAD-like helicases superfamily AP033_20895 SM00490 helicase superfamily c-terminal domain AP033_20900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_20900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_20915 SM00382 ATPases associated with a variety of cellular activities AP033_20921 SM00100 Cyclic nucleotide-monophosphate binding domain AP033_20921 SM00419 helix_turn_helix, cAMP Regulatory protein AP033_20931 SM00897 FIST N domain AP033_20931 SM01204 AP033_20931 AP033_20932 SM00387 Histidine kinase-like ATPases AP033_20932 SM00388 His Kinase A (phosphoacceptor) domain AP033_20932 SM00448 cheY-homologous receiver domain AP033_20933 SM00382 ATPases associated with a variety of cellular activities AP033_20935 SM00382 ATPases associated with a variety of cellular activities AP033_20946 SM00382 ATPases associated with a variety of cellular activities AP033_20948 SM00981 AP033_20948 AP033_20955 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AP033_20955 SM00245 tail specific protease AP033_20956 SM00945 ProQ/FINO family AP033_20958 SM00382 ATPases associated with a variety of cellular activities AP033_20962 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_20971 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AP033_20979 SM00382 ATPases associated with a variety of cellular activities AP033_20980 SM00387 Histidine kinase-like ATPases AP033_20980 SM00388 His Kinase A (phosphoacceptor) domain AP033_20981 SM00382 ATPases associated with a variety of cellular activities AP033_20981 SM00448 cheY-homologous receiver domain AP033_20984 SM00382 ATPases associated with a variety of cellular activities AP033_20986 SM00852 Probable molybdopterin binding domain AP033_20989 SM01144 AP033_20989 AP033_20991 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_21008 SM00382 ATPases associated with a variety of cellular activities AP033_21009 SM00420 helix_turn_helix, Deoxyribose operon repressor AP033_21009 SM01134 AP033_21009 AP033_21013 SM00354 helix_turn _helix lactose operon repressor AP033_21017 SM00849 Metallo-beta-lactamase superfamily AP033_21022 SM00382 ATPases associated with a variety of cellular activities AP033_21029 SM01022 AP033_21029 AP033_21037 SM00248 ankyrin repeats AP033_21038 SM01060 AP033_21038 AP033_21043 SM00822 AP033_21043 AP033_21044 SM00052 Putative diguanylate phosphodiesterase AP033_21045 SM00267 diguanylate cyclase AP033_21053 SM00267 diguanylate cyclase AP033_21056 SM00260 Two component signalling adaptor domain AP033_21056 SM00448 cheY-homologous receiver domain AP033_21058 SM00448 cheY-homologous receiver domain AP033_21059 SM00387 Histidine kinase-like ATPases AP033_21067 SM00028 Tetratricopeptide repeats AP033_21067 SM00386 HAT (Half-A-TPR) repeats AP033_21075 SM00112 Cadherin repeats. AP033_21085 SM00382 ATPases associated with a variety of cellular activities AP033_21090 SM00363 S4 RNA-binding domain AP033_21091 SM00487 DEAD-like helicases superfamily AP033_21091 SM00490 helicase superfamily c-terminal domain AP033_21093 SM00448 cheY-homologous receiver domain AP033_21093 SM00862 Transcriptional regulatory protein, C terminal AP033_21094 SM00387 Histidine kinase-like ATPases AP033_21096 SM00052 Putative diguanylate phosphodiesterase AP033_21098 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_21098 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_21103 SM00020 Trypsin-like serine protease AP033_21105 SM00448 cheY-homologous receiver domain AP033_21106 SM00052 Putative diguanylate phosphodiesterase AP033_21106 SM00421 helix_turn_helix, Lux Regulon AP033_21106 SM00448 cheY-homologous receiver domain AP033_21107 SM00062 Bacterial periplasmic substrate-binding proteins AP033_21107 SM00073 Histidine Phosphotransfer domain AP033_21107 SM00387 Histidine kinase-like ATPases AP033_21107 SM00388 His Kinase A (phosphoacceptor) domain AP033_21107 SM00448 cheY-homologous receiver domain AP033_21107 SM00918 Ligated ion channel L-glutamate- and glycine-binding site AP033_21108 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_21112 SM00382 ATPases associated with a variety of cellular activities AP033_21119 SM00382 ATPases associated with a variety of cellular activities AP033_21123 SM00155 Phospholipase D. Active site motifs. AP033_21132 SM00382 ATPases associated with a variety of cellular activities AP033_21136 SM00382 ATPases associated with a variety of cellular activities AP033_21137 SM00382 ATPases associated with a variety of cellular activities AP033_21140 SM01131 AP033_21140 AP033_21162 SM00052 Putative diguanylate phosphodiesterase AP033_21162 SM00091 PAS domain AP033_21163 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_21165 SM00344 helix_turn_helix ASNC type AP033_21171 SM00448 cheY-homologous receiver domain AP033_21171 SM00862 Transcriptional regulatory protein, C terminal AP033_21173 SM00354 helix_turn _helix lactose operon repressor AP033_21180 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AP033_21180 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AP033_21180 SM00493 AP033_21180 AP033_21185 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_21205 SM00490 helicase superfamily c-terminal domain AP033_21214 SM00382 ATPases associated with a variety of cellular activities AP033_21221 SM00342 helix_turn_helix, arabinose operon control protein AP033_21225 SM00387 Histidine kinase-like ATPases AP033_21225 SM00388 His Kinase A (phosphoacceptor) domain AP033_21225 SM00448 cheY-homologous receiver domain AP033_21240 SM00382 ATPases associated with a variety of cellular activities AP033_21241 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AP033_21243 SM00840 AP033_21243 AP033_21246 SM00052 Putative diguanylate phosphodiesterase AP033_21250 SM00491 AP033_21250 AP033_21254 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_21254 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_21258 SM00062 Bacterial periplasmic substrate-binding proteins AP033_21258 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AP033_21259 SM00382 ATPases associated with a variety of cellular activities AP033_21264 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_21264 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_21268 SM00763 PrkA AAA domain AP033_21274 SM00382 ATPases associated with a variety of cellular activities AP033_21275 SM00849 Metallo-beta-lactamase superfamily AP033_21278 SM00382 ATPases associated with a variety of cellular activities AP033_21281 SM00487 DEAD-like helicases superfamily AP033_21281 SM00490 helicase superfamily c-terminal domain AP033_21281 SM00982 AP033_21281 AP033_21281 SM01058 CarD-like/TRCF domain AP033_21292 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_21292 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_21294 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_21297 SM00843 AP033_21297 AP033_21298 SM00344 helix_turn_helix ASNC type AP033_21299 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AP033_21299 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AP033_21304 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AP033_21305 SM00028 Tetratricopeptide repeats AP033_21307 SM00411 bacterial (prokaryotic) histone like domain AP033_21308 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_21310 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AP033_21312 SM00411 bacterial (prokaryotic) histone like domain AP033_21313 SM00382 ATPases associated with a variety of cellular activities AP033_21313 SM00464 Found in ATP-dependent protease La (LON) AP033_21314 SM00382 ATPases associated with a variety of cellular activities AP033_21314 SM00994 ClpX C4-type zinc finger AP033_21314 SM01086 C-terminal, D2-small domain, of ClpB protein AP033_21317 SM00387 Histidine kinase-like ATPases AP033_21317 SM00388 His Kinase A (phosphoacceptor) domain AP033_21318 SM00382 ATPases associated with a variety of cellular activities AP033_21318 SM00448 cheY-homologous receiver domain AP033_21325 SM00052 Putative diguanylate phosphodiesterase AP033_21325 SM00267 diguanylate cyclase AP033_21328 SM00563 Phosphate acyltransferases AP033_21341 SM00495 Chitin-binding domain type 3 AP033_21341 SM00636 AP033_21341 AP033_21351 SM00978 AP033_21351 AP033_21354 SM00563 Phosphate acyltransferases AP033_21355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_21355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_21356 SM00530 Helix-turn-helix XRE-family like proteins AP033_21359 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AP033_21365 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_21366 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_21367 SM01144 AP033_21367 AP033_21370 SM00474 3'-5' exonuclease AP033_21376 SM00487 DEAD-like helicases superfamily AP033_21376 SM00491 AP033_21376 AP033_21381 SM00870 AP033_21381 AP033_21385 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_21391 SM00260 Two component signalling adaptor domain AP033_21391 SM00448 cheY-homologous receiver domain AP033_21405 SM00825 Beta-ketoacyl synthase AP033_21407 SM00822 AP033_21407 AP033_21408 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AP033_21414 SM00363 S4 RNA-binding domain AP033_21415 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_21420 SM00859 Semialdehyde dehydrogenase, NAD binding domain AP033_21422 SM00073 Histidine Phosphotransfer domain AP033_21432 SM01022 AP033_21432 AP033_21442 SM01040 BRO family, N-terminal domain AP033_21476 SM00883 Chaperonin 10 Kd subunit AP033_21482 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AP033_21482 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AP033_21482 SM00493 AP033_21482 AP033_21496 SM00382 ATPases associated with a variety of cellular activities AP033_21498 SM00260 Two component signalling adaptor domain AP033_21499 SM00260 Two component signalling adaptor domain AP033_21501 SM00448 cheY-homologous receiver domain AP033_21502 SM00073 Histidine Phosphotransfer domain AP033_21502 SM00260 Two component signalling adaptor domain AP033_21502 SM00387 Histidine kinase-like ATPases AP033_21502 SM01231 AP033_21502 AP033_21504 SM00448 cheY-homologous receiver domain AP033_21507 SM00382 ATPases associated with a variety of cellular activities AP033_21507 SM00962 SRP54-type protein, GTPase domain AP033_21509 SM00855 Phosphoglycerate mutase family AP033_21512 SM00836 DALR anticodon binding domain AP033_21512 SM01016 Arginyl tRNA synthetase N terminal dom AP033_21517 SM00899 AP033_21517 AP033_21518 SM00342 helix_turn_helix, arabinose operon control protein AP033_21520 SM00382 ATPases associated with a variety of cellular activities AP033_21522 SM00881 CoA binding domain AP033_21525 SM00861 Transketolase, pyrimidine binding domain AP033_21543 SM00859 Semialdehyde dehydrogenase, NAD binding domain AP033_21545 SM00825 Beta-ketoacyl synthase AP033_21553 SM00463 Small MutS-related domain AP033_21564 SM00382 ATPases associated with a variety of cellular activities AP033_21569 SM00382 ATPases associated with a variety of cellular activities AP033_21569 SM00448 cheY-homologous receiver domain AP033_21570 SM00091 PAS domain AP033_21570 SM00387 Histidine kinase-like ATPases AP033_21570 SM00388 His Kinase A (phosphoacceptor) domain AP033_21571 SM00382 ATPases associated with a variety of cellular activities AP033_21588 SM01130 AP033_21588 AP033_21591 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_21591 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_21594 SM00028 Tetratricopeptide repeats AP033_21606 SM00937 AP033_21606 AP033_21610 SM01400 AP033_21610 AP033_21633 SM00047 Lysozyme subfamily 2 AP033_21642 SM00138 Methyltransferase, chemotaxis proteins AP033_21643 SM00260 Two component signalling adaptor domain AP033_21643 SM00448 cheY-homologous receiver domain AP033_21644 SM00858 AP033_21644 AP033_21658 SM01081 Putative carbohydrate binding domain AP033_21662 SM00463 Small MutS-related domain AP033_21663 SM00363 S4 RNA-binding domain AP033_21664 SM00267 diguanylate cyclase AP033_21673 SM00479 AP033_21673 AP033_21676 SM00849 Metallo-beta-lactamase superfamily AP033_21678 SM00257 Lysin motif AP033_21680 SM00938 Nitrogen regulatory protein P-II AP033_21683 SM00977 TilS substrate C-terminal domain AP033_21685 SM00481 DNA polymerase alpha chain like domain AP033_21691 SM00935 Outer membrane protein (OmpH-like) AP033_21693 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AP033_21702 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_21713 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AP033_21723 SM00267 diguanylate cyclase AP033_21731 SM00900 AP033_21731 AP033_21741 SM00464 Found in ATP-dependent protease La (LON) AP033_21748 SM00925 MltA specific insert domain AP033_21765 SM00354 helix_turn _helix lactose operon repressor AP033_21766 SM01038 Beta galactosidase small chain AP033_21770 SM00838 Elongation factor G C-terminus AP033_21770 SM00889 Elongation factor G, domain IV AP033_21771 SM00382 ATPases associated with a variety of cellular activities AP033_21777 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AP033_21778 SM01133 AP033_21778 AP033_21786 SM00986 Uracil DNA glycosylase superfamily AP033_21786 SM00987 UreE urease accessory protein, C-terminal domain AP033_21787 SM00518 AP endonuclease family 2 AP033_21795 SM00448 cheY-homologous receiver domain AP033_21795 SM00862 Transcriptional regulatory protein, C terminal AP033_21796 SM00073 Histidine Phosphotransfer domain AP033_21796 SM00091 PAS domain AP033_21796 SM00387 Histidine kinase-like ATPases AP033_21796 SM00388 His Kinase A (phosphoacceptor) domain AP033_21796 SM00448 cheY-homologous receiver domain AP033_21797 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AP033_21797 SM00091 PAS domain AP033_21797 SM00267 diguanylate cyclase AP033_21798 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_21811 SM00382 ATPases associated with a variety of cellular activities AP033_21812 SM00507 HNH nucleases AP033_21815 SM00851 MGS-like domain AP033_21815 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AP033_21816 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AP033_21819 SM00957 SecA DEAD-like domain AP033_21819 SM00958 SecA preprotein cross-linking domain AP033_21822 SM00864 Tubulin/FtsZ family, GTPase domain AP033_21822 SM00865 Tubulin/FtsZ family, C-terminal domain AP033_21823 SM00842 Cell division protein FtsA AP033_21838 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_21838 SM00895 AP033_21838 AP033_21844 SM00644 AP033_21844 AP033_21854 SM00434 DNA Topoisomerase IV AP033_21855 SM00387 Histidine kinase-like ATPases AP033_21855 SM00433 TopoisomeraseII AP033_21863 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_21863 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_21865 SM00880 AP033_21865 AP033_21865 SM01118 AP033_21865 AP033_21868 SM00287 Bacterial SH3 domain homologues AP033_21870 SM00382 ATPases associated with a variety of cellular activities AP033_21872 SM01192 AP033_21872 AP033_21872 SM01193 AP033_21872 AP033_21875 SM00954 Region found in RelA / SpoT proteins AP033_21877 SM00073 Histidine Phosphotransfer domain AP033_21877 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_21877 SM00387 Histidine kinase-like ATPases AP033_21877 SM00388 His Kinase A (phosphoacceptor) domain AP033_21877 SM00448 cheY-homologous receiver domain AP033_21878 SM00267 diguanylate cyclase AP033_21885 SM00358 Double-stranded RNA binding motif AP033_21885 SM00535 Ribonuclease III family AP033_21909 SM00014 Acid phosphatase homologues AP033_21911 SM00917 LeuA allosteric (dimerisation) domain AP033_21912 SM01329 AP033_21912 AP033_21923 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_21933 SM00487 DEAD-like helicases superfamily AP033_21933 SM00490 helicase superfamily c-terminal domain AP033_21934 SM00670 Large family of predicted nucleotide-binding domains AP033_21939 SM00563 Phosphate acyltransferases AP033_21946 SM00382 ATPases associated with a variety of cellular activities AP033_21948 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_21952 SM00382 ATPases associated with a variety of cellular activities AP033_21958 SM00924 MgtE intracellular N domain AP033_21961 SM00382 ATPases associated with a variety of cellular activities AP033_21975 SM00382 ATPases associated with a variety of cellular activities AP033_21985 SM00487 DEAD-like helicases superfamily AP033_21985 SM00490 helicase superfamily c-terminal domain AP033_21990 SM01321 AP033_21990 AP033_21993 SM00662 RNA polymerases D AP033_21994 SM00363 S4 RNA-binding domain AP033_21994 SM01390 AP033_21994 AP033_22007 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AP033_22008 SM01374 AP033_22008 AP033_22012 SM00322 K homology RNA-binding domain AP033_22015 SM01382 AP033_22015 AP033_22015 SM01383 AP033_22015 AP033_22019 SM01403 AP033_22019 AP033_22020 SM00967 RNA 2'-O ribose methyltransferase substrate binding AP033_22021 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_22021 SM00357 Cold shock protein domain AP033_22021 SM00955 AP033_22021 AP033_22023 SM00671 Sel1-like repeats. AP033_22024 SM00788 Adenylosuccinate synthetase AP033_22031 SM00382 ATPases associated with a variety of cellular activities AP033_22036 SM00100 Cyclic nucleotide-monophosphate binding domain AP033_22036 SM00419 helix_turn_helix, cAMP Regulatory protein AP033_22037 SM01150 AP033_22037 AP033_22042 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_22052 SM00965 Secretin and TonB N terminus short domain AP033_22065 SM00859 Semialdehyde dehydrogenase, NAD binding domain AP033_22069 SM00971 Serine acetyltransferase, N-terminal AP033_22072 SM00450 Rhodanese Homology Domain AP033_22078 SM00841 Elongation factor P, C-terminal AP033_22078 SM01185 AP033_22078 AP033_22082 SM00883 Chaperonin 10 Kd subunit AP033_22091 SM00382 ATPases associated with a variety of cellular activities AP033_22091 SM01086 C-terminal, D2-small domain, of ClpB protein AP033_22094 SM00354 helix_turn _helix lactose operon repressor AP033_22095 SM00487 DEAD-like helicases superfamily AP033_22095 SM00490 helicase superfamily c-terminal domain AP033_22097 SM00919 Malic enzyme, NAD binding domain AP033_22097 SM01274 AP033_22097 AP033_22107 SM00448 cheY-homologous receiver domain AP033_22107 SM00862 Transcriptional regulatory protein, C terminal AP033_22108 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_22108 SM00387 Histidine kinase-like ATPases AP033_22108 SM00388 His Kinase A (phosphoacceptor) domain AP033_22112 SM00267 diguanylate cyclase AP033_22117 SM00421 helix_turn_helix, Lux Regulon AP033_22117 SM00448 cheY-homologous receiver domain AP033_22118 SM01091 Transporter associated domain AP033_22122 SM00072 Guanylate kinase homologues. AP033_22123 SM01409 AP033_22123 AP033_22124 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_22124 SM00954 Region found in RelA / SpoT proteins AP033_22125 SM00487 DEAD-like helicases superfamily AP033_22125 SM00490 helicase superfamily c-terminal domain AP033_22127 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_22127 SM00387 Histidine kinase-like ATPases AP033_22127 SM00388 His Kinase A (phosphoacceptor) domain AP033_22128 SM00448 cheY-homologous receiver domain AP033_22128 SM00862 Transcriptional regulatory protein, C terminal AP033_22129 SM00267 diguanylate cyclase AP033_22131 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_22131 SM00732 Likely ribonuclease with RNase H fold. AP033_22147 SM00382 ATPases associated with a variety of cellular activities AP033_22150 SM00363 S4 RNA-binding domain AP033_22160 SM01230 AP033_22160 AP033_22162 SM00091 PAS domain AP033_22162 SM00387 Histidine kinase-like ATPases AP033_22162 SM00388 His Kinase A (phosphoacceptor) domain AP033_22163 SM00382 ATPases associated with a variety of cellular activities AP033_22163 SM00448 cheY-homologous receiver domain AP033_22164 SM00052 Putative diguanylate phosphodiesterase AP033_22164 SM00267 diguanylate cyclase AP033_22178 SM00360 RNA recognition motif AP033_22188 SM00382 ATPases associated with a variety of cellular activities AP033_22189 SM00382 ATPases associated with a variety of cellular activities AP033_22189 SM00962 SRP54-type protein, GTPase domain AP033_22189 SM00963 SRP54-type protein, helical bundle domain AP033_22201 SM01144 AP033_22201 AP033_22202 SM00052 Putative diguanylate phosphodiesterase AP033_22202 SM00267 diguanylate cyclase AP033_22202 SM00897 FIST N domain AP033_22202 SM01204 AP033_22202 AP033_22208 SM01219 AP033_22208 AP033_22214 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_22220 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AP033_22220 SM00474 3'-5' exonuclease AP033_22220 SM00475 5'-3' exonuclease AP033_22220 SM00482 DNA polymerase A domain AP033_22222 SM01004 Delta-aminolevulinic acid dehydratase AP033_22224 SM00450 Rhodanese Homology Domain AP033_22226 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AP033_22226 SM00091 PAS domain AP033_22226 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_22230 SM00563 Phosphate acyltransferases AP033_22249 SM00052 Putative diguanylate phosphodiesterase AP033_22249 SM00091 PAS domain AP033_22249 SM00267 diguanylate cyclase AP033_22250 SM00344 helix_turn_helix ASNC type AP033_22255 SM00876 Biotin and Thiamin Synthesis associated domain AP033_22273 SM01001 AIR carboxylase AP033_22278 SM00257 Lysin motif AP033_22291 SM00563 Phosphate acyltransferases AP033_22292 SM00382 ATPases associated with a variety of cellular activities AP033_22298 SM00829 Enoylreductase AP033_22309 SM00387 Histidine kinase-like ATPases AP033_22309 SM00433 TopoisomeraseII AP033_22311 SM00480 DNA polymerase III beta subunit AP033_22312 SM00382 ATPases associated with a variety of cellular activities AP033_22312 SM00760 Bacterial dnaA protein helix-turn-helix domain AP033_22313 SM00062 Bacterial periplasmic substrate-binding proteins AP033_22315 SM00382 ATPases associated with a variety of cellular activities AP033_22321 SM01228 AP033_22321 AP033_22324 SM00470 ParB-like nuclease domain AP033_22332 SM00382 ATPases associated with a variety of cellular activities AP033_22361 SM00382 ATPases associated with a variety of cellular activities AP033_22371 SM00342 helix_turn_helix, arabinose operon control protein AP033_22374 SM00341 Helicase and RNase D C-terminal AP033_22374 SM00487 DEAD-like helicases superfamily AP033_22374 SM00490 helicase superfamily c-terminal domain AP033_22374 SM00956 AP033_22374 AP033_22377 SM00382 ATPases associated with a variety of cellular activities AP033_22379 SM00382 ATPases associated with a variety of cellular activities AP033_22394 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_22394 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_22394 SM01049 AP033_22394 AP033_22415 SM00530 Helix-turn-helix XRE-family like proteins AP033_22419 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AP033_22419 SM01232 AP033_22419 AP033_22445 SM00382 ATPases associated with a variety of cellular activities AP033_22458 SM00849 Metallo-beta-lactamase superfamily AP033_22458 SM01027 Beta-Casp domain AP033_22460 SM00986 Uracil DNA glycosylase superfamily AP033_22460 SM00987 UreE urease accessory protein, C-terminal domain AP033_22466 SM00411 bacterial (prokaryotic) histone like domain AP033_22468 SM01209 AP033_22468 AP033_22468 SM01210 AP033_22468 AP033_22469 SM00798 AICARFT/IMPCHase bienzyme AP033_22469 SM00851 MGS-like domain AP033_22470 SM00422 helix_turn_helix, mercury resistance AP033_22471 SM00862 Transcriptional regulatory protein, C terminal AP033_22474 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_22474 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_22474 SM01049 AP033_22474 AP033_22481 SM00354 helix_turn _helix lactose operon repressor AP033_22486 SM00878 Biotin carboxylase C-terminal domain AP033_22490 SM00479 AP033_22490 AP033_22491 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_22493 SM00387 Histidine kinase-like ATPases AP033_22493 SM00388 His Kinase A (phosphoacceptor) domain AP033_22493 SM00448 cheY-homologous receiver domain AP033_22495 SM00487 DEAD-like helicases superfamily AP033_22495 SM00490 helicase superfamily c-terminal domain AP033_22497 SM00357 Cold shock protein domain AP033_22497 SM00382 ATPases associated with a variety of cellular activities AP033_22497 SM00959 Rho termination factor, N-terminal domain AP033_22508 SM00155 Phospholipase D. Active site motifs. AP033_22519 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AP033_22519 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AP033_22520 SM00649 Ribosomal protein L11/L12 AP033_22525 SM00663 RNA polymerase I subunit A N-terminus AP033_22537 SM00479 AP033_22537 AP033_22549 SM00257 Lysin motif AP033_22549 SM00646 AP033_22549 AP033_22550 SM00853 MutL C terminal dimerisation domain AP033_22550 SM01340 AP033_22550 AP033_22554 SM00244 prohibitin homologues AP033_22555 SM00244 prohibitin homologues AP033_22558 SM00320 WD40 repeats AP033_22566 SM00838 Elongation factor G C-terminus AP033_22566 SM00889 Elongation factor G, domain IV AP033_22575 SM00382 ATPases associated with a variety of cellular activities AP033_22576 SM01005 Alanine racemase, C-terminal domain AP033_22596 SM01018 B12 binding domain AP033_22602 SM00421 helix_turn_helix, Lux Regulon AP033_22604 SM00052 Putative diguanylate phosphodiesterase AP033_22604 SM00267 diguanylate cyclase AP033_22608 SM00965 Secretin and TonB N terminus short domain AP033_22610 SM00028 Tetratricopeptide repeats AP033_22611 SM00382 ATPases associated with a variety of cellular activities AP033_22625 SM00316 Ribosomal protein S1-like RNA-binding domain AP033_22648 SM00650 Ribosomal RNA adenine dimethylases AP033_22652 SM00271 DnaJ molecular chaperone homology domain AP033_22658 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_22658 SM01049 AP033_22658