locus-tag	class	description
FORC55_0001	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
FORC55_0002	COG0592	DNA-directed DNA polymerase activity
FORC55_0003	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
FORC55_0004	COG0187	DNA topoisomerase II activity
FORC55_0006	COG0071	Belongs to the small heat shock protein (HSP20) family
FORC55_0007	COG3977	Valine--pyruvate aminotransferase
FORC55_0008	COG0751	glycine-tRNA ligase activity
FORC55_0009	COG0752	glycyl-tRNA synthetase alpha subunit
FORC55_0010	COG2119	membrane
FORC55_0012	COG0425	Belongs to the sulfur carrier protein TusA family
FORC55_0014	COG0604	alcohol dehydrogenase
FORC55_0016	COG0129	dihydroxy-acid dehydratase activity
FORC55_0017	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FORC55_0020	COG0606	chelatase, subunit chli
FORC55_0021	COG0204	Acyl-transferase
FORC55_0022	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FORC55_0023	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FORC55_0025	COG3084	Protein conserved in bacteria
FORC55_0026	COG4326	sporulation control protein
FORC55_0027	COG1272	protein, Hemolysin III
FORC55_0029	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FORC55_0030	COG0569	domain protein
FORC55_0031	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FORC55_0031	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FORC55_0032	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FORC55_0033	COG0242	peptide deformylase activity
FORC55_0034	COG1652	LysM domain
FORC55_0035	COG0758	DNA mediated transformation
FORC55_0036	COG2922	Belongs to the Smg family
FORC55_0037	COG0551	DNA topoisomerase type I activity
FORC55_0038	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FORC55_0039	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FORC55_0040	COG0009	L-threonylcarbamoyladenylate synthase
FORC55_0041	COG0408	coproporphyrinogen oxidase activity
FORC55_0042	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
FORC55_0044	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
FORC55_0045	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
FORC55_0046	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
FORC55_0048	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FORC55_0049	COG2104	thiamine diphosphate biosynthetic process
FORC55_0050	COG2022	thiamine diphosphate biosynthetic process
FORC55_0051	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
FORC55_0052	COG0006	proline dipeptidase activity
FORC55_0052	COG0006	proline dipeptidase activity
FORC55_0056	COG1522	sequence-specific DNA binding
FORC55_0057	COG5002	protein histidine kinase activity
FORC55_0057	COG5001	Diguanylate cyclase
FORC55_0058	COG0742	ribosomal rna small subunit methyltransferase
FORC55_0060	COG0697	spore germination
FORC55_0061	COG0589	response to stress
FORC55_0062	COG1528	Iron-storage protein
FORC55_0064	COG2081	HI0933 family
FORC55_0065	COG0840	transmembrane signaling receptor activity
FORC55_0067	COG1322	Protein conserved in bacteria
FORC55_0068	COG2226	methyltransferase
FORC55_0070	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FORC55_0071	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FORC55_0072	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
FORC55_0073	COG0805	protein transport
FORC55_0075	COG1858	cytochrome C peroxidase
FORC55_0076	COG0534	Mate efflux family protein
FORC55_0078	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FORC55_0079	COG2937	Belongs to the GPAT DAPAT family
FORC55_0080	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
FORC55_0081	COG3161	chorismate lyase activity
FORC55_0082	COG1580	Controls the rotational direction of flagella during chemotaxis
FORC55_0085	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FORC55_0086	COG0084	hydrolase, TatD family'
FORC55_0089	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FORC55_0089	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FORC55_0090	COG0218	Necessary for normal cell division and for the maintenance of normal septation
FORC55_0093	COG3078	GTPase activator activity
FORC55_0095	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FORC55_0096	COG3071	HemY protein
FORC55_0097	COG2959	enzyme of heme biosynthesis
FORC55_0098	COG1587	Uroporphyrinogen-III synthase
FORC55_0099	COG0181	hydroxymethylbilane synthase activity
FORC55_0100	COG3072	Adenylate cyclase
FORC55_0101	COG1965	Belongs to the frataxin family
FORC55_0102	COG0019	diaminopimelate decarboxylase activity
FORC55_0103	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
FORC55_0105	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
FORC55_0106	COG1011	Hydrolase
FORC55_0107	COG2200	EAL domain
FORC55_0107	COG2199	diguanylate cyclase activity
FORC55_0107	COG3287	FIST C domain
FORC55_0110	COG0561	phosphatase activity
FORC55_0111	COG2267	carboxylic ester hydrolase activity
FORC55_0112	COG1280	lysine exporter protein (LysE YggA)
FORC55_0113	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
FORC55_0114	COG0783	Belongs to the Dps family
FORC55_0120	COG0742	ribosomal rna small subunit methyltransferase
FORC55_0121	COG0552	protein localization to endoplasmic reticulum
FORC55_0122	COG2884	Cell division ATP-binding protein ftsE
FORC55_0123	COG2177	Part of the ABC transporter FtsEX involved in
FORC55_0124	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FORC55_0125	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FORC55_0128	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FORC55_0129	COG4206	TonB-dependent receptor
FORC55_0130	COG1943	Transposase
FORC55_0131	COG1404	Belongs to the peptidase S8 family
FORC55_0132	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
FORC55_0135	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
FORC55_0136	COG5001	Diguanylate cyclase
FORC55_0136	COG3300	MHYT domain
FORC55_0138	COG3852	Histidine kinase
FORC55_0140	COG0174	glutamine synthetase
FORC55_0145	COG1490	D-aminoacyl-tRNA deacylase activity
FORC55_0146	COG0456	acetyltransferase
FORC55_0148	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
FORC55_0149	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
FORC55_0150	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
FORC55_0151	COG3031	protein transport across the cell outer membrane
FORC55_0153	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FORC55_0154	COG1459	type II secretion system
FORC55_0155	COG2165	general secretion pathway protein
FORC55_0156	COG2165	general secretion pathway protein
FORC55_0157	COG2165	general secretion pathway protein
FORC55_0158	COG4795	General secretion pathway protein
FORC55_0159	COG3156	type II secretion system protein K
FORC55_0160	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
FORC55_0161	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
FORC55_0163	COG1218	3'(2'),5'-bisphosphate nucleotidase
FORC55_0164	COG0494	nUDIX hydrolase
FORC55_0165	COG0316	Belongs to the HesB IscA family
FORC55_0165	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
FORC55_0166	COG1040	competence protein
FORC55_0167	COG0596	Alpha beta hydrolase
FORC55_0169	COG2183	response to ionizing radiation
FORC55_0170	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FORC55_0173	COG1129	ABC transporter
FORC55_0174	COG1172	Belongs to the binding-protein-dependent transport system permease family
FORC55_0175	COG1472	Belongs to the glycosyl hydrolase 3 family
FORC55_0177	COG0745	RESPONSE REGULATOR receiver
FORC55_0179	COG2233	PERMEase
FORC55_0180	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FORC55_0181	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FORC55_0182	COG1758	RNA polymerase activity
FORC55_0183	COG0194	GDP metabolic process
FORC55_0184	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
FORC55_0185	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FORC55_0187	COG3263	regulation of cellular component size
FORC55_0189	COG4232	protein-disulfide reductase activity
FORC55_0192	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
FORC55_0193	COG1027	Aspartate ammonia-lyase
FORC55_0194	COG3706	GGDEF domain
FORC55_0195	COG3030	protein affecting phage T7 exclusion by the F plasmid
FORC55_0196	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FORC55_0198	COG2205	protein histidine kinase activity
FORC55_0199	COG0745	RESPONSE REGULATOR receiver
FORC55_0201	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FORC55_0202	COG0205	6-phosphofructokinase activity
FORC55_0203	COG1494	fructose-1,6-bisphosphatase
FORC55_0204	COG3074	FtsZ-dependent cytokinesis
FORC55_0205	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
FORC55_0206	COG0460	homoserine dehydrogenase
FORC55_0206	COG0527	aspartate kinase activity
FORC55_0207	COG0626	cystathionine gamma-synthase activity
FORC55_0208	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
FORC55_0209	COG0281	malic enzyme
FORC55_0210	COG0254	rRNA binding
FORC55_0211	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FORC55_0212	COG1609	Transcriptional regulator
FORC55_0213	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FORC55_0214	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
FORC55_0215	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
FORC55_0216	COG1575	Belongs to the MenA family. Type 1 subfamily
FORC55_0217	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FORC55_0219	COG0149	triose-phosphate isomerase activity
FORC55_0224	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FORC55_0225	COG0459	protein refolding
FORC55_0227	COG1509	lysine 2,3-aminomutase activity
FORC55_0228	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FORC55_0229	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
FORC55_0230	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
FORC55_0231	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FORC55_0232	COG1053	succinate dehydrogenase
FORC55_0233	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
FORC55_0234	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FORC55_0235	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
FORC55_0236	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
FORC55_0237	COG1045	serine acetyltransferase
FORC55_0239	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
FORC55_0240	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FORC55_0241	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
FORC55_0242	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FORC55_0243	COG0137	argininosuccinate synthase activity
FORC55_0244	COG0165	Argininosuccinate lyase
FORC55_0246	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FORC55_0247	COG0678	peroxiredoxin activity
FORC55_0247	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FORC55_0249	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
FORC55_0255	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
FORC55_0256	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
FORC55_0258	COG0338	D12 class N6 adenine-specific DNA methyltransferase
FORC55_0259	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FORC55_0260	COG0546	phosphoglycolate phosphatase activity
FORC55_0261	COG0180	Tryptophanyl-tRNA synthetase
FORC55_0264	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FORC55_0266	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FORC55_0268	COG1012	belongs to the aldehyde dehydrogenase family
FORC55_0270	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FORC55_0271	COG3954	Phosphoribulokinase
FORC55_0273	COG0429	hydrolase of the alpha beta-hydrolase fold
FORC55_0275	COG0488	(ABC) transporter
FORC55_0276	COG2249	NAD(P)H dehydrogenase (quinone) activity
FORC55_0280	COG1047	Peptidyl-prolyl cis-trans
FORC55_0282	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
FORC55_0283	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
FORC55_0284	COG3083	sulfuric ester hydrolase activity
FORC55_0285	COG0557	exoribonuclease II activity
FORC55_0286	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FORC55_0287	COG0051	transcription antitermination factor activity, RNA binding
FORC55_0288	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
FORC55_0289	COG0088	Forms part of the polypeptide exit tunnel
FORC55_0290	COG0089	rRNA binding
FORC55_0291	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
FORC55_0292	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
FORC55_0293	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
FORC55_0294	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
FORC55_0295	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
FORC55_0296	COG0255	Belongs to the universal ribosomal protein uL29 family
FORC55_0297	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
FORC55_0298	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
FORC55_0299	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
FORC55_0300	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
FORC55_0301	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
FORC55_0302	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
FORC55_0303	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
FORC55_0304	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
FORC55_0305	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
FORC55_0306	COG1841	ribosomal large subunit assembly
FORC55_0307	COG0200	Binds to the 23S rRNA
FORC55_0308	COG0201	protein transport
FORC55_0310	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
FORC55_0311	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
FORC55_0312	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
FORC55_0313	COG0202	RNA polymerase activity
FORC55_0314	COG0203	ribosomal protein L17
FORC55_0316	COG0545	Peptidyl-prolyl cis-trans isomerase
FORC55_0317	COG3061	Opacity-associated protein A
FORC55_0317	COG3266	domain, Protein
FORC55_0318	COG0697	spore germination
FORC55_0319	COG2153	protein acetylation
FORC55_0320	COG0513	Belongs to the DEAD box helicase family
FORC55_0322	COG0737	Belongs to the 5'-nucleotidase family
FORC55_0323	COG1648	precorrin-2 dehydrogenase activity
FORC55_0323	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FORC55_0324	COG0175	sulfate reduction
FORC55_0325	COG2895	sulfate adenylyltransferase (ATP) activity
FORC55_0326	COG0529	Catalyzes the synthesis of activated sulfate
FORC55_0330	COG1136	(ABC) transporter
FORC55_0333	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
FORC55_0334	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FORC55_0335	COG0729	surface antigen
FORC55_0337	COG2105	PFAM AIG2 family protein
FORC55_0338	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
FORC55_0339	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
FORC55_0340	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FORC55_0341	COG0163	prenyltransferase activity
FORC55_0342	COG4143	(ABC) transporter
FORC55_0343	COG1178	ABC-type Fe3 transport system permease component
FORC55_0344	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
FORC55_0345	COG3028	Belongs to the UPF0307 family
FORC55_0346	COG0312	modulator of DNA gyrase
FORC55_0347	COG2239	Acts as a magnesium transporter
FORC55_0348	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FORC55_0350	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FORC55_0351	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FORC55_0353	COG1137	ATPase activity
FORC55_0354	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
FORC55_0357	COG0517	IMP dehydrogenase activity
FORC55_0357	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
FORC55_0359	COG1127	ABC transporter
FORC55_0360	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
FORC55_0361	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FORC55_0362	COG2854	intermembrane phospholipid transfer
FORC55_0364	COG5007	Belongs to the BolA IbaG family
FORC55_0365	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
FORC55_0366	COG0204	Acyl-transferase
FORC55_0367	COG0251	oxidation-reduction process
FORC55_0368	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
FORC55_0369	COG0540	Belongs to the ATCase OTCase family
FORC55_0370	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
FORC55_0371	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FORC55_0373	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FORC55_0374	COG0564	pseudouridine synthase activity
FORC55_0375	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FORC55_0376	COG0525	valine-tRNA ligase activity
FORC55_0377	COG2927	DNA polymerase III (CHI subunit)
FORC55_0378	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
FORC55_0379	COG0795	lipopolysaccharide-transporting ATPase activity
FORC55_0380	COG0795	lipopolysaccharide-transporting ATPase activity
FORC55_0382	COG3437	response regulator, receiver
FORC55_0385	COG0066	3-isopropylmalate dehydratase activity
FORC55_0386	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
FORC55_0387	COG0473	3-isopropylmalate dehydrogenase activity
FORC55_0388	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FORC55_0392	COG0583	DNA-binding transcription factor activity
FORC55_0393	COG1022	Amp-dependent synthetase and ligase
FORC55_0394	COG0028	Belongs to the TPP enzyme family
FORC55_0395	COG0440	acetolactate synthase activity
FORC55_0396	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FORC55_0397	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
FORC55_0398	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FORC55_0399	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
FORC55_0401	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FORC55_0402	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FORC55_0404	COG0354	folic acid binding
FORC55_0405	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
FORC55_0407	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
FORC55_0408	COG1595	DNA-templated transcription, initiation
FORC55_0410	COG3026	antisigma factor binding
FORC55_0411	COG3086	response to oxidative stress
FORC55_0412	COG0481	GTPase activity
FORC55_0413	COG0681	Belongs to the peptidase S26 family
FORC55_0414	COG0571	ribonuclease III activity
FORC55_0415	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FORC55_0416	COG1381	Involved in DNA repair and RecF pathway recombination
FORC55_0417	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
FORC55_0418	COG0736	holo-[acyl-carrier-protein] synthase activity
FORC55_0424	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FORC55_0425	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FORC55_0426	COG3956	TIGRFAM MazG family protein
FORC55_0427	COG0504	CTP synthase activity
FORC55_0428	COG0148	phosphopyruvate hydratase activity
FORC55_0429	COG0617	tRNA 3'-terminal CCA addition
FORC55_0430	COG3267	Type II secretory pathway component ExeA
FORC55_0430	COG3409	Peptidoglycan-binding domain 1 protein
FORC55_0432	COG4991	sh3 domain protein
FORC55_0433	COG0306	phosphate transporter
FORC55_0434	COG1392	Phosphate transport regulator
FORC55_0435	COG3025	triphosphatase activity
FORC55_0436	COG0840	transmembrane signaling receptor activity
FORC55_0437	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
FORC55_0439	COG1538	Outer membrane efflux protein
FORC55_0440	COG0494	nUDIX hydrolase
FORC55_0441	COG3151	Protein conserved in bacteria
FORC55_0443	COG3150	esterase
FORC55_0444	COG0187	DNA topoisomerase II activity
FORC55_0445	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FORC55_0446	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
FORC55_0447	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
FORC55_0448	COG0237	dephospho-CoA kinase activity
FORC55_0450	COG1459	type II secretion system
FORC55_0451	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FORC55_0455	COG0716	FMN binding
FORC55_0456	COG4974	Belongs to the 'phage' integrase family
FORC55_0457	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FORC55_0458	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FORC55_0459	COG0737	Belongs to the 5'-nucleotidase family
FORC55_0460	COG2186	Transcriptional regulator
FORC55_0461	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
FORC55_0462	COG0508	dehydrogenase complex catalyzes the overall conversion of
FORC55_0463	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FORC55_0464	COG0275	rRNA processing
FORC55_0465	COG3116	cell division
FORC55_0466	COG0768	penicillin binding
FORC55_0467	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FORC55_0468	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FORC55_0469	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FORC55_0470	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
FORC55_0471	COG0772	Belongs to the SEDS family
FORC55_0472	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
FORC55_0473	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
FORC55_0474	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FORC55_0475	COG0849	cell division
FORC55_0476	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FORC55_0477	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
FORC55_0479	COG0653	protein targeting
FORC55_0480	COG0494	nUDIX hydrolase
FORC55_0481	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
FORC55_0483	COG0505	Belongs to the CarA family
FORC55_0484	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
FORC55_0490	COG0730	response to heat
FORC55_0491	COG0583	DNA-binding transcription factor activity
FORC55_0492	COG2860	membrane
FORC55_0493	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FORC55_0495	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FORC55_0497	COG0493	'glutamate synthase
FORC55_0498	COG0069	glutamate synthase activity
FORC55_0498	COG0067	glutamate synthase
FORC55_0498	COG0070	glutamate synthase
FORC55_0500	COG0067	glutamate synthase
FORC55_0500	COG0069	glutamate synthase activity
FORC55_0500	COG0070	glutamate synthase
FORC55_0501	COG1242	4 iron, 4 sulfur cluster binding
FORC55_0502	COG4251	negative regulation of phosphorylation
FORC55_0502	COG3706	GGDEF domain
FORC55_0502	COG2203	Gaf domain
FORC55_0502	COG5001	Diguanylate cyclase
FORC55_0503	COG0784	Response regulator, receiver
FORC55_0503	COG2198	Histidine kinase
FORC55_0503	COG5002	protein histidine kinase activity
FORC55_0504	COG0745	RESPONSE REGULATOR receiver
FORC55_0506	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FORC55_0509	COG0083	homoserine kinase activity
FORC55_0510	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
FORC55_0511	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
FORC55_0512	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
FORC55_0513	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
FORC55_0516	COG1115	amino acid carrier protein
FORC55_0518	COG0084	hydrolase, TatD family'
FORC55_0519	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FORC55_0521	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
FORC55_0522	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
FORC55_0523	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
FORC55_0524	COG0813	purine-nucleoside phosphorylase activity
FORC55_0526	COG0560	Phosphoserine phosphatase
FORC55_0528	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
FORC55_0529	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
FORC55_0530	COG1022	Amp-dependent synthetase and ligase
FORC55_0533	COG3250	beta-galactosidase activity
FORC55_0534	COG1609	Transcriptional regulator
FORC55_0535	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FORC55_0538	COG0189	ligase activity
FORC55_0538	COG0569	domain protein
FORC55_0539	COG0456	acetyltransferase
FORC55_0541	COG2171	N-acyltransferase activity
FORC55_0543	COG3141	response to X-ray
FORC55_0546	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
FORC55_0547	COG1074	ATP-dependent DNA helicase activity
FORC55_0548	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FORC55_0550	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
FORC55_0550	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
FORC55_0552	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
FORC55_0553	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FORC55_0554	COG2166	iron-sulfur cluster assembly
FORC55_0555	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FORC55_0556	COG0693	protein deglycase activity
FORC55_0557	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FORC55_0558	COG3248	Nucleoside-binding outer membrane protein
FORC55_0560	COG1595	DNA-templated transcription, initiation
FORC55_0562	COG2211	Major facilitator Superfamily
FORC55_0563	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FORC55_0565	COG2813	Specifically methylates the guanine in position
FORC55_0566	COG0271	Belongs to the BolA IbaG family
FORC55_0567	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
FORC55_0568	COG1805	sodium ion transport
FORC55_0569	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
FORC55_0570	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
FORC55_0571	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
FORC55_0572	COG2871	sodium ion transport
FORC55_0573	COG1477	protein flavinylation
FORC55_0575	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FORC55_0577	COG3706	GGDEF domain
FORC55_0578	COG0733	neurotransmitter:sodium symporter activity
FORC55_0579	COG3385	transposase activity
FORC55_0581	COG0189	ligase activity
FORC55_0582	COG0189	ligase activity
FORC55_0582	COG4067	protein conserved in archaea
FORC55_0583	COG2195	Cleaves the N-terminal amino acid of tripeptides
FORC55_0584	COG2252	PERMEase
FORC55_0585	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
FORC55_0588	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
FORC55_0589	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
FORC55_0590	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
FORC55_0591	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FORC55_0591	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FORC55_0594	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
FORC55_0595	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FORC55_0596	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
FORC55_0597	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FORC55_0599	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
FORC55_0600	COG0024	Methionine aminopeptidase
FORC55_0601	COG0052	Belongs to the universal ribosomal protein uS2 family
FORC55_0602	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
FORC55_0603	COG0528	UMP kinase activity
FORC55_0604	COG0233	cytoplasmic translational termination
FORC55_0605	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
FORC55_0606	COG0575	Belongs to the CDS family
FORC55_0607	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
FORC55_0608	COG0750	zinc metalloprotease
FORC55_0610	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
FORC55_0611	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FORC55_0612	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FORC55_0613	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FORC55_0614	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FORC55_0615	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
FORC55_0616	COG0587	DNA-directed DNA polymerase activity
FORC55_0617	COG0825	malonyl-CoA metabolic process
FORC55_0618	COG0037	tRNA processing
FORC55_0620	COG3479	Phenolic acid decarboxylase
FORC55_0621	COG0347	Belongs to the P(II) protein family
FORC55_0623	COG0741	lytic transglycosylase activity
FORC55_0623	COG1388	LysM domain
FORC55_0624	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FORC55_0625	COG2226	methyltransferase
FORC55_0626	COG0328	RNA-DNA hybrid ribonuclease activity
FORC55_0627	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FORC55_0629	COG1960	acyl-CoA dehydrogenase activity
FORC55_0630	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
FORC55_0631	COG0121	glutamine amidotransferase
FORC55_0632	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FORC55_0633	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
FORC55_0634	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
FORC55_0635	COG3706	GGDEF domain
FORC55_0636	COG1187	pseudouridine synthase activity
FORC55_0637	COG2840	Smr protein MutS2
FORC55_0638	COG3735	TraB family
FORC55_0641	COG2608	mercury ion transmembrane transporter activity
FORC55_0641	COG2217	Heavy metal translocating P-type atpase
FORC55_0642	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FORC55_0645	COG4774	siderophore transport
FORC55_0645	COG1629	transport
FORC55_0646	COG2375	cellular response to nickel ion
FORC55_0647	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FORC55_0647	COG3433	isochorismatase activity
FORC55_0647	COG2226	methyltransferase
FORC55_0654	COG0835	chemotaxis
FORC55_0654	COG0784	Response regulator, receiver
FORC55_0655	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FORC55_0656	COG1815	bacterial-type flagellum-dependent cell motility
FORC55_0657	COG1558	bacterial-type flagellum-dependent cell motility
FORC55_0658	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
FORC55_0659	COG1749	Flagellar hook protein flgE
FORC55_0660	COG4787	bacterial-type flagellum-dependent cell motility
FORC55_0661	COG4786	Flagellar basal body rod
FORC55_0662	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
FORC55_0663	COG1706	bacterial-type flagellum-dependent cell motility
FORC55_0664	COG1705	Flagellar rod assembly protein muramidase FlgJ
FORC55_0664	COG3951	Flagellar rod assembly protein muramidase FlgJ
FORC55_0667	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FORC55_0668	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FORC55_0669	COG0012	GTP binding
FORC55_0670	COG0193	aminoacyl-tRNA hydrolase activity
FORC55_0671	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
FORC55_0672	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
FORC55_0673	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
FORC55_0674	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
FORC55_0675	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
FORC55_0676	COG2890	protein-(glutamine-N5) methyltransferase activity
FORC55_0677	COG3094	Invasion gene expression up-regulator, SirB
FORC55_0678	COG2912	Transglutaminase-like superfamily
FORC55_0679	COG2877	3-deoxy-8-phosphooctulonate synthase activity
FORC55_0680	COG0737	Belongs to the 5'-nucleotidase family
FORC55_0681	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FORC55_0682	COG2233	PERMEase
FORC55_0686	COG1393	Belongs to the ArsC family
FORC55_0687	COG4783	chaperone-mediated protein folding
FORC55_0690	COG3385	transposase activity
FORC55_0693	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FORC55_0695	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FORC55_0696	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FORC55_0697	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
FORC55_0699	COG1876	peptidase activity
FORC55_0700	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FORC55_0701	COG1393	Belongs to the ArsC family
FORC55_0703	COG1943	Transposase
FORC55_0706	COG2837	iron assimilation
FORC55_0707	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FORC55_0708	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FORC55_0709	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FORC55_0710	COG1334	flagellar protein FlaG
FORC55_0711	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
FORC55_0713	COG1516	flagellar protein fliS
FORC55_0714	COG2204	response regulator
FORC55_0715	COG4191	Histidine kinase
FORC55_0716	COG2204	response regulator
FORC55_0717	COG1677	Flagellar hook-basal body complex protein FliE
FORC55_0719	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FORC55_0720	COG1317	bacterial-type flagellum organization
FORC55_0724	COG1580	Controls the rotational direction of flagella during chemotaxis
FORC55_0729	COG1987	bacterial-type flagellum assembly
FORC55_0730	COG1684	flagellar biosynthetic protein fliR
FORC55_0731	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FORC55_0733	COG2890	protein-(glutamine-N5) methyltransferase activity
FORC55_0734	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
FORC55_0735	COG2860	membrane
FORC55_0736	COG3101	peptidyl-lysine hydroxylation
FORC55_0738	COG0431	NADPH-dependent FMN reductase
FORC55_0739	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FORC55_0739	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
FORC55_0740	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FORC55_0741	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FORC55_0742	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FORC55_0743	COG0735	belongs to the Fur family
FORC55_0745	COG0583	DNA-binding transcription factor activity
FORC55_0747	COG1346	cytolysis
FORC55_0750	COG0596	Alpha beta hydrolase
FORC55_0751	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
FORC55_0752	COG0033	Phosphoglucomutase
FORC55_0754	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FORC55_0755	COG0372	Belongs to the citrate synthase family
FORC55_0756	COG2009	succinate dehydrogenase
FORC55_0757	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
FORC55_0758	COG1053	succinate dehydrogenase
FORC55_0760	COG0567	Dehydrogenase, E1 component
FORC55_0761	COG0508	dehydrogenase complex catalyzes the overall conversion of
FORC55_0762	COG0045	succinate-CoA ligase (ADP-forming) activity
FORC55_0764	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FORC55_0765	COG1121	(ABC) transporter
FORC55_0766	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
FORC55_0767	COG4977	sequence-specific DNA binding
FORC55_0768	COG1918	ferrous iron import across plasma membrane
FORC55_0772	COG0018	arginyl-trna synthetase
FORC55_0774	COG1025	Belongs to the peptidase M16 family
FORC55_0775	COG2062	phosphohistidine phosphatase, SixA
FORC55_0778	COG0455	bacterial-type flagellum organization
FORC55_0781	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
FORC55_0782	COG0643	Histidine kinase
FORC55_0782	COG2198	Histidine kinase
FORC55_0783	COG2201	protein-glutamate methylesterase activity
FORC55_0784	COG1192	Involved in chromosome partitioning
FORC55_0786	COG0835	chemotaxis
FORC55_0788	COG4133	protoheme IX ABC transporter activity
FORC55_0789	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FORC55_0790	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FORC55_0792	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
FORC55_0793	COG1138	Cytochrome C-type biogenesis protein
FORC55_0794	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FORC55_0795	COG3088	subunit of a heme lyase
FORC55_0795	COG4235	cytochrome complex assembly
FORC55_0797	COG2853	Lipoprotein
FORC55_0801	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
FORC55_0802	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FORC55_0803	COG0123	including yeast histone deacetylase and acetoin utilization protein
FORC55_0804	COG3083	sulfuric ester hydrolase activity
FORC55_0806	COG3081	Nucleoid-associated protein
FORC55_0808	COG1757	Na H antiporter
FORC55_0809	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FORC55_0810	COG2095	MarC family integral membrane protein
FORC55_0811	COG1012	belongs to the aldehyde dehydrogenase family
FORC55_0811	COG1454	alcohol dehydrogenase
FORC55_0813	COG0659	secondary active sulfate transmembrane transporter activity
FORC55_0814	COG1530	ribonuclease E activity
FORC55_0815	COG0564	pseudouridine synthase activity
FORC55_0816	COG0424	maF-like protein
FORC55_0817	COG1399	metal-binding, possibly nucleic acid-binding protein
FORC55_0818	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FORC55_0819	COG0416	fatty acid biosynthetic process
FORC55_0820	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FORC55_0821	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FORC55_0822	COG1028	Short-chain dehydrogenase reductase Sdr
FORC55_0823	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FORC55_0824	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FORC55_0825	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FORC55_0826	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FORC55_0827	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
FORC55_0829	COG0084	hydrolase, TatD family'
FORC55_0830	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FORC55_0830	COG1263	PTS System
FORC55_0831	COG0733	neurotransmitter:sodium symporter activity
FORC55_0833	COG4667	esterase of the alpha-beta hydrolase superfamily
FORC55_0835	COG1940	carbohydrate kinase activity
FORC55_0836	COG0784	Response regulator, receiver
FORC55_0836	COG0835	chemotaxis
FORC55_0839	COG2226	methyltransferase
FORC55_0841	COG0676	glucose-6-phosphate 1-epimerase activity
FORC55_0842	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FORC55_0843	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FORC55_0845	COG3139	Protein of unknown function (DUF1315)
FORC55_0846	COG0252	asparaginase activity
FORC55_0847	COG0616	signal peptide processing
FORC55_0848	COG0446	pyridine nucleotide-disulphide oxidoreductase
FORC55_0848	COG1902	pentaerythritol trinitrate reductase activity
FORC55_0849	COG0788	formyltetrahydrofolate deformylase activity
FORC55_0851	COG1199	ATP-dependent helicase activity
FORC55_0852	COG1214	PFAM Peptidase M22, glycoprotease
FORC55_0855	COG0596	Alpha beta hydrolase
FORC55_0856	COG0318	PFAM AMP-dependent synthetase and ligase
FORC55_0857	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
FORC55_0860	COG0232	Belongs to the dGTPase family. Type 2 subfamily
FORC55_0861	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
FORC55_0862	COG0436	Aminotransferase
FORC55_0863	COG1169	isochorismate synthase
FORC55_0864	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
FORC55_0865	COG0596	Alpha beta hydrolase
FORC55_0867	COG1441	menaquinone biosynthetic process
FORC55_0869	COG3135	benzoate transporter
FORC55_0874	COG3015	lipoprotein NlpE involved in copper resistance
FORC55_0875	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
FORC55_0876	COG2894	cell division
FORC55_0877	COG0850	regulation of cytokinetic process
FORC55_0878	COG3100	YcgL domain-containing protein
FORC55_0879	COG2951	lytic endotransglycosylase activity
FORC55_0881	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FORC55_0882	COG3005	denitrification pathway
FORC55_0883	COG0243	molybdopterin cofactor binding
FORC55_0886	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FORC55_0888	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
FORC55_0894	COG4589	Belongs to the CDS family
FORC55_0896	COG3300	MHYT domain
FORC55_0896	COG5001	Diguanylate cyclase
FORC55_0898	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
FORC55_0899	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
FORC55_0900	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
FORC55_0901	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
FORC55_0903	COG4191	Histidine kinase
FORC55_0905	COG0544	peptidyl-prolyl cis-trans isomerase activity
FORC55_0907	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
FORC55_0908	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
FORC55_0909	COG0776	regulation of translation
FORC55_0910	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FORC55_0911	COG1555	photosystem II stabilization
FORC55_0912	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
FORC55_0913	COG0539	negative regulation of cytoplasmic translation
FORC55_0914	COG0776	regulation of translation
FORC55_0915	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
FORC55_0916	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
FORC55_0917	COG0284	orotidine-5'-phosphate decarboxylase activity
FORC55_0918	COG0601	transmembrane transport
FORC55_0919	COG4239	(ABC) transporter, permease
FORC55_0920	COG0747	negative chemotaxis
FORC55_0921	COG0444	Belongs to the ABC transporter superfamily
FORC55_0922	COG4608	Belongs to the ABC transporter superfamily
FORC55_0928	COG0583	DNA-binding transcription factor activity
FORC55_0930	COG0686	Belongs to the AlaDH PNT family
FORC55_0933	COG1674	ftsk spoiiie
FORC55_0934	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
FORC55_0935	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
FORC55_0936	COG2186	Transcriptional regulator
FORC55_0939	COG0537	adenosine 5'-monophosphoramidase activity
FORC55_0945	COG1252	NADH dehydrogenase
FORC55_0949	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FORC55_0951	COG4591	ABC-type transport system involved in lipoprotein release permease component
FORC55_0952	COG1136	(ABC) transporter
FORC55_0953	COG4591	ABC-type transport system involved in lipoprotein release permease component
FORC55_0955	COG0658	competence protein
FORC55_0955	COG2333	competence protein COMEC
FORC55_0956	COG1132	(ABC) transporter
FORC55_0957	COG1663	tetraacyldisaccharide 4'-kinase activity
FORC55_0959	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
FORC55_0960	COG2719	SpoVR family
FORC55_0961	COG2718	Belongs to the UPF0229 family
FORC55_0962	COG2766	serine protein kinase
FORC55_0964	COG3013	Belongs to the UPF0304 family
FORC55_0966	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
FORC55_0968	COG0840	transmembrane signaling receptor activity
FORC55_0970	COG1882	Formate acetyltransferase
FORC55_0975	COG4215	(ABC) transporter
FORC55_0976	COG4160	amino acid transport
FORC55_0977	COG0708	Exodeoxyribonuclease III
FORC55_0978	COG0840	transmembrane signaling receptor activity
FORC55_0980	COG3923	Primosomal replication protein n
FORC55_0981	COG0730	response to heat
FORC55_0982	COG1199	ATP-dependent helicase activity
FORC55_0983	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FORC55_0984	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
FORC55_0986	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
FORC55_0987	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FORC55_0988	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FORC55_0989	COG0215	cysteine-tRNA ligase activity
FORC55_0990	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
FORC55_0991	COG0632	four-way junction helicase activity
FORC55_0992	COG2255	four-way junction helicase activity
FORC55_0993	COG1271	oxidase subunit
FORC55_0994	COG1294	oxidase, subunit
FORC55_0995	COG3790	cyd operon protein YbgE
FORC55_0996	COG0824	Thioesterase
FORC55_0997	COG0811	peptide transport
FORC55_1000	COG0823	Involved in the tonB-independent uptake of proteins
FORC55_1001	COG2885	chlorophyll binding
FORC55_1003	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
FORC55_1005	COG0784	Response regulator, receiver
FORC55_1005	COG5002	protein histidine kinase activity
FORC55_1007	COG1012	belongs to the aldehyde dehydrogenase family
FORC55_1008	COG3284	Transcriptional regulator
FORC55_1009	COG4628	conserved protein (DUF2132)
FORC55_1011	COG0415	Belongs to the DNA photolyase family
FORC55_1016	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FORC55_1018	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
FORC55_1018	COG3008	intermembrane lipid transfer
FORC55_1019	COG2995	paraquat-inducible protein a
FORC55_1020	COG1309	transcriptional regulator
FORC55_1021	COG1012	belongs to the aldehyde dehydrogenase family
FORC55_1026	COG1960	acyl-CoA dehydrogenase activity
FORC55_1027	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FORC55_1028	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
FORC55_1029	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
FORC55_1030	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
FORC55_1032	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
FORC55_1034	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FORC55_1035	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
FORC55_1036	COG0297	glycogen (starch) synthase activity
FORC55_1040	COG3070	regulator of competence-specific genes
FORC55_1041	COG1609	Transcriptional regulator
FORC55_1042	COG3381	protein complex oligomerization
FORC55_1043	COG0745	RESPONSE REGULATOR receiver
FORC55_1044	COG1434	Gram-negative-bacterium-type cell wall biogenesis
FORC55_1045	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FORC55_1046	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
FORC55_1047	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
FORC55_1048	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
FORC55_1049	COG1979	alcohol dehydrogenase
FORC55_1050	COG2207	Transcriptional regulator
FORC55_1054	COG1032	radical SAM domain protein
FORC55_1055	COG0582	viral genome integration into host DNA
FORC55_1075	COG2974	May be involved in recombination
FORC55_1083	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FORC55_1130	COG0612	Peptidase, M16
FORC55_1133	COG0583	DNA-binding transcription factor activity
FORC55_1134	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
FORC55_1136	COG2350	Protein conserved in bacteria
FORC55_1137	COG1607	acyl-coa hydrolase
FORC55_1138	COG2917	probably involved in intracellular septation
FORC55_1140	COG1434	Gram-negative-bacterium-type cell wall biogenesis
FORC55_1141	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FORC55_1143	COG2116	formate transmembrane transporter activity
FORC55_1145	COG4459	periplasmic nitrate reductase
FORC55_1146	COG3005	denitrification pathway
FORC55_1147	COG0243	molybdopterin cofactor binding
FORC55_1150	COG1227	inorganic diphosphatase activity
FORC55_1153	COG4172	Belongs to the ABC transporter superfamily
FORC55_1155	COG4171	peptide transport system, permease
FORC55_1156	COG4168	peptide transport system, permease
FORC55_1158	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
FORC55_1159	COG1842	Phage shock protein A
FORC55_1162	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FORC55_1165	COG2818	Glycosylase
FORC55_1166	COG0589	response to stress
FORC55_1168	COG0626	cystathionine gamma-synthase activity
FORC55_1170	COG0733	neurotransmitter:sodium symporter activity
FORC55_1171	COG0564	pseudouridine synthase activity
FORC55_1172	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FORC55_1173	COG4136	ATPase activity
FORC55_1174	COG4135	transport system, permease component
FORC55_1175	COG4134	Bacterial extracellular solute-binding protein
FORC55_1177	COG3313	Fe-S protein
FORC55_1179	COG0842	Transport permease protein
FORC55_1180	COG1131	(ABC) transporter
FORC55_1181	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FORC55_1182	COG0814	amino acid
FORC55_1184	COG2239	Acts as a magnesium transporter
FORC55_1186	COG4934	collagen metabolic process
FORC55_1192	COG0840	transmembrane signaling receptor activity
FORC55_1195	COG2203	Gaf domain
FORC55_1195	COG4251	negative regulation of phosphorylation
FORC55_1195	COG5001	Diguanylate cyclase
FORC55_1195	COG3706	GGDEF domain
FORC55_1196	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
FORC55_1197	COG5002	protein histidine kinase activity
FORC55_1200	COG1061	Type III restriction enzyme res subunit
FORC55_1201	COG1187	pseudouridine synthase activity
FORC55_1202	COG2814	Major facilitator Superfamily
FORC55_1204	COG0702	epimerase
FORC55_1205	COG0534	Mate efflux family protein
FORC55_1206	COG4181	ATPase activity
FORC55_1209	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
FORC55_1211	COG1748	Saccharopine dehydrogenase
FORC55_1212	COG0019	diaminopimelate decarboxylase activity
FORC55_1214	COG1538	Outer membrane efflux protein
FORC55_1218	COG0583	DNA-binding transcription factor activity
FORC55_1220	COG1451	nucleotide metabolic process
FORC55_1223	COG3063	Type IV pilus biogenesis stability protein PilW
FORC55_1224	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
FORC55_1228	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FORC55_1231	COG3290	protein histidine kinase activity
FORC55_1232	COG4565	transcriptional regulatory protein
FORC55_1234	COG0784	Response regulator, receiver
FORC55_1234	COG0835	chemotaxis
FORC55_1237	COG0745	RESPONSE REGULATOR receiver
FORC55_1237	COG3706	GGDEF domain
FORC55_1240	COG1085	galactose-1-phosphate uridylyltransferase
FORC55_1241	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
FORC55_1242	COG2017	converts alpha-aldose to the beta-anomer
FORC55_1243	COG3706	GGDEF domain
FORC55_1244	COG2200	EAL domain
FORC55_1244	COG2199	diguanylate cyclase activity
FORC55_1247	COG3527	Alpha-acetolactate decarboxylase
FORC55_1250	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FORC55_1260	COG1271	oxidase subunit
FORC55_1261	COG1294	oxidase, subunit
FORC55_1262	COG1136	(ABC) transporter
FORC55_1262	COG4591	ABC-type transport system involved in lipoprotein release permease component
FORC55_1263	COG0577	efflux transmembrane transporter activity
FORC55_1263	COG1136	(ABC) transporter
FORC55_1268	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
FORC55_1269	COG2723	6-phospho-beta-galactosidase activity
FORC55_1270	COG1609	Transcriptional regulator
FORC55_1271	COG0251	oxidation-reduction process
FORC55_1272	COG2731	YhcH YjgK YiaL family protein
FORC55_1273	COG0584	glycerophosphoryl diester phosphodiesterase
FORC55_1274	COG1349	DNA-binding transcription factor activity
FORC55_1275	COG3842	ATPase activity
FORC55_1276	COG0395	ABC-type sugar transport system, permease component
FORC55_1277	COG1175	transmembrane transport
FORC55_1280	COG0811	peptide transport
FORC55_1281	COG0811	peptide transport
FORC55_1282	COG0848	biopolymer transport protein
FORC55_1283	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
FORC55_1285	COG1793	dna ligase
FORC55_1287	COG0534	Mate efflux family protein
FORC55_1291	COG0791	NLP P60 protein
FORC55_1292	COG0840	transmembrane signaling receptor activity
FORC55_1295	COG1940	carbohydrate kinase activity
FORC55_1297	COG0303	'Molybdopterin
FORC55_1298	COG0746	molybdenum cofactor guanylyltransferase activity
FORC55_1299	COG3842	ATPase activity
FORC55_1300	COG4662	Binding-protein-dependent transport system inner membrane component
FORC55_1302	COG2204	response regulator
FORC55_1303	COG3852	Histidine kinase
FORC55_1304	COG0488	(ABC) transporter
FORC55_1305	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FORC55_1311	COG0243	molybdopterin cofactor binding
FORC55_1311	COG3383	formate dehydrogenase (NAD+) activity
FORC55_1312	COG0437	4 iron, 4 sulfur cluster binding
FORC55_1315	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
FORC55_1317	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FORC55_1320	COG2996	Protein conserved in bacteria
FORC55_1321	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FORC55_1321	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
FORC55_1322	COG3008	intermembrane lipid transfer
FORC55_1323	COG2995	paraquat-inducible protein a
FORC55_1324	COG1132	(ABC) transporter
FORC55_1325	COG1956	GAF domain-containing protein
FORC55_1326	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
FORC55_1329	COG0308	aminopeptidase N
FORC55_1331	COG0167	dihydroorotate dehydrogenase activity
FORC55_1333	COG0116	Belongs to the methyltransferase superfamily
FORC55_1333	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
FORC55_1337	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FORC55_1338	COG1067	ATP-dependent peptidase activity
FORC55_1339	COG3120	sequence-specific DNA binding
FORC55_1352	COG1073	alpha beta
FORC55_1352	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
FORC55_1352	COG3064	Membrane
FORC55_1353	COG2994	toxin metabolic process
FORC55_1361	COG0784	Response regulator, receiver
FORC55_1361	COG2205	protein histidine kinase activity
FORC55_1364	COG3278	Belongs to the heme-copper respiratory oxidase family
FORC55_1367	COG2010	Cytochrome c
FORC55_1369	COG2217	Heavy metal translocating P-type atpase
FORC55_1372	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FORC55_1373	COG0589	response to stress
FORC55_1374	COG0037	tRNA processing
FORC55_1378	COG3842	ATPase activity
FORC55_1379	COG1176	ABC-type spermidine putrescine transport system, permease component I
FORC55_1380	COG1177	transmembrane transport
FORC55_1381	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FORC55_1382	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FORC55_1385	COG1115	amino acid carrier protein
FORC55_1386	COG1280	lysine exporter protein (LysE YggA)
FORC55_1394	COG3501	Rhs element vgr protein
FORC55_1396	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
FORC55_1398	COG2814	Major facilitator Superfamily
FORC55_1399	COG1566	PFAM secretion protein HlyD family protein
FORC55_1400	COG1538	Outer membrane efflux protein
FORC55_1402	COG0513	Belongs to the DEAD box helicase family
FORC55_1405	COG2076	Multidrug Resistance protein
FORC55_1406	COG0415	Belongs to the DNA photolyase family
FORC55_1407	COG0477	Major facilitator Superfamily
FORC55_1408	COG0583	DNA-binding transcription factor activity
FORC55_1410	COG0402	S-adenosylhomocysteine deaminase activity
FORC55_1411	COG0095	Lipoate-protein ligase
FORC55_1412	COG0443	Heat shock 70 kDa protein
FORC55_1414	COG1643	Atp-dependent helicase
FORC55_1420	COG0443	Heat shock 70 kDa protein
FORC55_1421	COG0443	Heat shock 70 kDa protein
FORC55_1422	COG3706	GGDEF domain
FORC55_1428	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
FORC55_1429	COG0602	queuosine metabolic process
FORC55_1431	COG0561	phosphatase activity
FORC55_1433	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FORC55_1434	COG4597	amino acid ABC transporter
FORC55_1435	COG0765	amino acid transport
FORC55_1436	COG1126	abc transporter atp-binding protein
FORC55_1437	COG0670	Belongs to the BI1 family
FORC55_1438	COG2920	part of a sulfur-relay system
FORC55_1439	COG1254	Belongs to the acylphosphatase family
FORC55_1440	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
FORC55_1441	COG3706	GGDEF domain
FORC55_1444	COG3437	response regulator, receiver
FORC55_1444	COG2205	protein histidine kinase activity
FORC55_1444	COG3850	Histidine kinase
FORC55_1444	COG4999	Histidine kinase
FORC55_1448	COG3437	response regulator, receiver
FORC55_1449	COG0625	glutathione transferase activity
FORC55_1451	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
FORC55_1453	COG2195	Cleaves the N-terminal amino acid of tripeptides
FORC55_1459	COG0372	Belongs to the citrate synthase family
FORC55_1460	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
FORC55_1461	COG2186	Transcriptional regulator
FORC55_1469	COG1129	ABC transporter
FORC55_1474	COG0745	RESPONSE REGULATOR receiver
FORC55_1475	COG2205	protein histidine kinase activity
FORC55_1476	COG3713	MltA-interacting MipA family protein
FORC55_1477	COG2990	Protein conserved in bacteria
FORC55_1479	COG2205	protein histidine kinase activity
FORC55_1480	COG0471	metal ion transport
FORC55_1482	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FORC55_1485	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FORC55_1486	COG3283	Transcriptional regulator of aromatic amino acids metabolism
FORC55_1487	COG3768	UPF0283 membrane protein
FORC55_1488	COG3106	COG3106 Predicted ATPase
FORC55_1491	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FORC55_1492	COG0494	nUDIX hydrolase
FORC55_1493	COG0814	amino acid
FORC55_1494	COG1760	l-serine dehydratase
FORC55_1495	COG0720	synthase
FORC55_1496	COG0840	transmembrane signaling receptor activity
FORC55_1497	COG0017	Asparaginyl-tRNA synthetase
FORC55_1498	COG0351	phosphomethylpyrimidine kinase
FORC55_1499	COG1448	Aminotransferase
FORC55_1503	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
FORC55_1504	COG2943	transferase activity, transferring hexosyl groups
FORC55_1505	COG1609	Transcriptional regulator
FORC55_1506	COG3394	polysaccharide catabolic process
FORC55_1507	COG1486	melibiose metabolic process
FORC55_1508	COG1447	Phosphotransferase system cellobiose-specific component IIA
FORC55_1510	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FORC55_1511	COG0726	polysaccharide deacetylase
FORC55_1512	COG0726	polysaccharide deacetylase
FORC55_1513	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FORC55_1514	COG1846	Transcriptional regulator
FORC55_1519	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FORC55_1522	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FORC55_1523	COG3108	Peptidase M15
FORC55_1529	COG3385	transposase activity
FORC55_1530	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
FORC55_1532	COG2814	Major facilitator Superfamily
FORC55_1536	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FORC55_1537	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FORC55_1538	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FORC55_1544	COG0840	transmembrane signaling receptor activity
FORC55_1547	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
FORC55_1548	COG4139	cobalamin transport
FORC55_1549	COG2988	succinylglutamate desuccinylase activity
FORC55_1552	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
FORC55_1553	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
FORC55_1554	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FORC55_1556	COG2925	Exonuclease
FORC55_1558	COG1346	cytolysis
FORC55_1559	COG0295	cytidine deaminase activity
FORC55_1561	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
FORC55_1562	COG0500	methyltransferase
FORC55_1564	COG0776	regulation of translation
FORC55_1565	COG0072	phenylalanine-tRNA ligase activity
FORC55_1565	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FORC55_1566	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
FORC55_1568	COG0745	RESPONSE REGULATOR receiver
FORC55_1568	COG3706	GGDEF domain
FORC55_1570	COG0322	excinuclease ABC activity
FORC55_1571	COG2197	response regulator
FORC55_1572	COG0417	DNA replication proofreading
FORC55_1573	COG5001	Diguanylate cyclase
FORC55_1575	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
FORC55_1579	COG1228	amidohydrolase
FORC55_1580	COG0010	Belongs to the arginase family
FORC55_1581	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
FORC55_1582	COG2986	histidine ammonia-lyase
FORC55_1587	COG0247	lactate metabolic process
FORC55_1587	COG0277	FAD linked oxidase domain protein
FORC55_1591	COG2885	chlorophyll binding
FORC55_1595	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
FORC55_1597	COG0281	malic enzyme
FORC55_1599	COG2949	membrane
FORC55_1600	COG3706	GGDEF domain
FORC55_1601	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FORC55_1603	COG0492	ferredoxin-NADP+ reductase activity
FORC55_1604	COG4988	ABC transporter
FORC55_1605	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FORC55_1606	COG1187	pseudouridine synthase activity
FORC55_1607	COG0009	L-threonylcarbamoyladenylate synthase
FORC55_1608	COG0613	PHP domain protein
FORC55_1609	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FORC55_1610	COG0512	Glutamine amidotransferase of anthranilate synthase
FORC55_1611	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FORC55_1612	COG0134	indole-3-glycerol-phosphate synthase activity
FORC55_1612	COG0135	phosphoribosylanthranilate isomerase activity
FORC55_1613	COG0133	tryptophan synthase activity
FORC55_1614	COG0159	tryptophan synthase activity
FORC55_1616	COG1435	thymidine kinase activity
FORC55_1617	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
FORC55_1618	COG1801	Protein of unknown function DUF72
FORC55_1619	COG4106	trans-aconitate 2-methyltransferase activity
FORC55_1620	COG0500	methyltransferase
FORC55_1621	COG0189	ligase activity
FORC55_1621	COG4067	protein conserved in archaea
FORC55_1624	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
FORC55_1626	COG3852	Histidine kinase
FORC55_1629	COG3070	regulator of competence-specific genes
FORC55_1631	COG2431	L-lysine efflux transmembrane transporter activity
FORC55_1633	COG0076	glutamate decarboxylase activity
FORC55_1634	COG1737	Transcriptional regulator
FORC55_1635	COG1012	belongs to the aldehyde dehydrogenase family
FORC55_1635	COG1454	alcohol dehydrogenase
FORC55_1636	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
FORC55_1637	COG3385	transposase activity
FORC55_1639	COG0542	response to heat
FORC55_1640	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
FORC55_1641	COG1278	Cold shock
FORC55_1642	COG3385	transposase activity
FORC55_1644	COG1187	pseudouridine synthase activity
FORC55_1645	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
FORC55_1645	COG0140	phosphoribosyl-ATP diphosphatase activity
FORC55_1646	COG0107	imidazoleglycerol-phosphate synthase activity
FORC55_1647	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
FORC55_1648	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
FORC55_1649	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FORC55_1649	COG0131	Imidazoleglycerol-phosphate dehydratase
FORC55_1650	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FORC55_1651	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
FORC55_1652	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
FORC55_1653	COG1757	Na H antiporter
FORC55_1654	COG2916	Histone family protein nucleoid-structuring protein H-NS
FORC55_1655	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FORC55_1656	COG0482	sulfurtransferase activity
FORC55_1657	COG2915	High frequency lysogenization protein hflD homolog
FORC55_1658	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FORC55_1660	COG2268	Band 7 protein
FORC55_1662	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FORC55_1665	COG0300	oxidoreductase activity
FORC55_1667	COG0501	Belongs to the peptidase M48B family
FORC55_1669	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
FORC55_1670	COG2226	methyltransferase
FORC55_1671	COG0156	8-amino-7-oxononanoate synthase activity
FORC55_1672	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
FORC55_1673	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FORC55_1674	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
FORC55_1675	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FORC55_1676	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
FORC55_1677	COG0653	protein targeting
FORC55_1678	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FORC55_1679	COG2203	Gaf domain
FORC55_1679	COG2199	diguanylate cyclase activity
FORC55_1681	COG4120	Belongs to the binding-protein-dependent transport system permease family
FORC55_1683	COG4628	conserved protein (DUF2132)
FORC55_1684	COG3092	negative regulation of chromosome organization
FORC55_1685	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FORC55_1686	COG0857	belongs to the CobB CobQ family
FORC55_1686	COG0280	phosphate acetyltransferase
FORC55_1687	COG0435	Glutathione S-transferase
FORC55_1688	COG4608	Belongs to the ABC transporter superfamily
FORC55_1689	COG0444	Belongs to the ABC transporter superfamily
FORC55_1690	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FORC55_1691	COG0601	transmembrane transport
FORC55_1695	COG2204	response regulator
FORC55_1696	COG3300	MHYT domain
FORC55_1696	COG5001	Diguanylate cyclase
FORC55_1697	COG4191	Histidine kinase
FORC55_1698	COG5002	protein histidine kinase activity
FORC55_1700	COG2201	protein-glutamate methylesterase activity
FORC55_1703	COG0009	L-threonylcarbamoyladenylate synthase
FORC55_1706	COG1881	PFAM PEBP family protein
FORC55_1712	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FORC55_1713	COG0640	Transcriptional regulator
FORC55_1714	COG3706	GGDEF domain
FORC55_1718	COG1946	Acyl-CoA thioesterase
FORC55_1719	COG1522	sequence-specific DNA binding
FORC55_1721	COG0616	signal peptide processing
FORC55_1722	COG1028	Short-chain dehydrogenase reductase Sdr
FORC55_1726	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
FORC55_1727	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
FORC55_1729	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FORC55_1731	COG0745	RESPONSE REGULATOR receiver
FORC55_1732	COG0583	DNA-binding transcription factor activity
FORC55_1733	COG0778	Nitroreductase
FORC55_1734	COG1250	3-hydroxyacyl-CoA dehydrogenase
FORC55_1734	COG1024	Enoyl-CoA hydratase
FORC55_1735	COG0183	Belongs to the thiolase family
FORC55_1738	COG2067	long-chain fatty acid transport protein
FORC55_1739	COG2067	long-chain fatty acid transport protein
FORC55_1740	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FORC55_1741	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
FORC55_1742	COG2982	Protein involved in outer membrane biogenesis
FORC55_1743	COG0572	uridine kinase
FORC55_1745	COG0489	protein tyrosine kinase activity
FORC55_1746	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FORC55_1746	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FORC55_1748	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
FORC55_1750	COG4109	DRTGG domain
FORC55_1751	COG2199	diguanylate cyclase activity
FORC55_1752	COG0314	molybdopterin synthase activity
FORC55_1753	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
FORC55_1754	COG0315	cyclic pyranopterin monophosphate synthase activity
FORC55_1755	COG0521	Mo-molybdopterin cofactor biosynthetic process
FORC55_1756	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FORC55_1757	COG0391	Required for morphogenesis under gluconeogenic growth conditions
FORC55_1758	COG2198	Histidine kinase
FORC55_1759	COG2204	response regulator
FORC55_1760	COG0556	nucleotide-excision repair
FORC55_1761	COG4657	Part of a membrane complex involved in electron transport
FORC55_1762	COG2878	Part of a membrane complex involved in electron transport
FORC55_1763	COG4656	Part of a membrane complex involved in electron transport
FORC55_1764	COG4658	electron transport chain
FORC55_1765	COG4659	FMN binding
FORC55_1766	COG4660	Part of a membrane complex involved in electron transport
FORC55_1767	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FORC55_1768	COG0346	lactoylglutathione lyase activity
FORC55_1771	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FORC55_1772	COG2056	Na+-H+ antiporter family
FORC55_1773	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
FORC55_1774	COG1286	toxin biosynthetic process
FORC55_1775	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
FORC55_1776	COG0285	dihydrofolate synthase activity
FORC55_1777	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
FORC55_1778	COG0101	tRNA pseudouridine synthase activity
FORC55_1781	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FORC55_1782	COG2190	(PTS) system
FORC55_1782	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FORC55_1782	COG1263	PTS System
FORC55_1783	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
FORC55_1784	COG1846	Transcriptional regulator
FORC55_1784	COG1940	carbohydrate kinase activity
FORC55_1785	COG4651	solute:proton antiporter activity
FORC55_1785	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FORC55_1786	COG0367	asparagine synthase
FORC55_1789	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
FORC55_1790	COG0563	adenylate kinase activity
FORC55_1791	COG0326	Molecular chaperone. Has ATPase activity
FORC55_1792	COG3710	Transcriptional regulator
FORC55_1795	COG0622	Phosphoesterase
FORC55_1796	COG1090	epimerase
FORC55_1797	COG0300	oxidoreductase activity
FORC55_1798	COG3118	belongs to the thioredoxin family
FORC55_1799	COG0330	HflC and HflK could
FORC55_1800	COG1585	Membrane protein implicated in regulation of membrane protease activity
FORC55_1801	COG0789	Transcriptional regulator
FORC55_1804	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
FORC55_1805	COG3115	cell septum assembly
FORC55_1806	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
FORC55_1807	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FORC55_1808	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FORC55_1810	COG2190	(PTS) system
FORC55_1811	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FORC55_1812	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FORC55_1813	COG1702	phosphate starvation-inducible protein PhoH
FORC55_1814	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
FORC55_1815	COG4535	Mg2 and Co2 transporter CorC
FORC55_1816	COG0815	Transfers the fatty acyl group on membrane lipoproteins
FORC55_1817	COG2888	peptidyl-tyrosine sulfation
FORC55_1818	COG0495	leucyl-tRNA aminoacylation
FORC55_1819	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
FORC55_1820	COG1466	dna polymerase III delta subunit
FORC55_1821	COG0799	negative regulation of ribosome biogenesis
FORC55_1822	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
FORC55_1823	COG0768	penicillin binding
FORC55_1824	COG0772	Belongs to the SEDS family
FORC55_1825	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
FORC55_1826	COG1686	Belongs to the peptidase S11 family
FORC55_1827	COG2921	Belongs to the UPF0250 family
FORC55_1828	COG0321	lipoyl(octanoyl) transferase activity
FORC55_1829	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
FORC55_1831	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
FORC55_1836	COG1596	polysaccharide export
FORC55_1838	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FORC55_1845	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
FORC55_1847	COG0438	transferase activity, transferring glycosyl groups
FORC55_1849	COG1045	serine acetyltransferase
FORC55_1853	COG1045	serine acetyltransferase
FORC55_1854	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FORC55_1855	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FORC55_1857	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FORC55_1859	COG0366	Alpha amylase catalytic
FORC55_1860	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FORC55_1860	COG1263	PTS System
FORC55_1861	COG1609	Transcriptional regulator
FORC55_1862	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FORC55_1863	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FORC55_1864	COG2011	ABC-type metal ion transport system permease component
FORC55_1865	COG1464	Belongs to the NlpA lipoprotein family
FORC55_1866	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
FORC55_1868	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
FORC55_1868	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
FORC55_1870	COG3706	GGDEF domain
FORC55_1871	COG1611	Belongs to the LOG family
FORC55_1872	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FORC55_1873	COG2363	Small membrane protein
FORC55_1874	COG0583	DNA-binding transcription factor activity
FORC55_1875	COG0301	tRNA thio-modification
FORC55_1875	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FORC55_1877	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FORC55_1878	COG1722	exodeoxyribonuclease VII activity
FORC55_1879	COG0142	geranyltranstransferase activity
FORC55_1880	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
FORC55_1881	COG0564	pseudouridine synthase activity
FORC55_1882	COG3098	single-species biofilm formation
FORC55_1886	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FORC55_1888	COG1671	Belongs to the UPF0178 family
FORC55_1889	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
FORC55_1890	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FORC55_1891	COG0254	rRNA binding
FORC55_1892	COG1720	tRNA m6t6A37 methyltransferase activity
FORC55_1893	COG0442	prolyl-tRNA aminoacylation
FORC55_1897	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FORC55_1897	COG0047	phosphoribosylformylglycinamidine synthase activity
FORC55_1899	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
FORC55_1900	COG0590	tRNA wobble adenosine to inosine editing
FORC55_1901	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
FORC55_1907	COG0484	heat shock protein binding
FORC55_1908	COG0443	Heat shock 70 kDa protein
FORC55_1909	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
FORC55_1910	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
FORC55_1911	COG0497	DNA recombination
FORC55_1912	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FORC55_1913	COG2914	Belongs to the UPF0125 (RnfH) family
FORC55_1914	COG2867	negative regulation of translational initiation
FORC55_1915	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
FORC55_1916	COG0582	viral genome integration into host DNA
FORC55_1923	COG1518	maintenance of DNA repeat elements
FORC55_1926	COG3501	Rhs element vgr protein
FORC55_1931	COG2433	Pfam Transposase IS66
FORC55_1939	COG1061	Type III restriction enzyme res subunit
FORC55_1942	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
FORC55_1943	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
FORC55_1944	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FORC55_1946	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
FORC55_1947	COG3697	Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase
FORC55_1948	COG3051	citrate lyase alpha subunit
FORC55_1949	COG2301	Belongs to the HpcH HpaI aldolase family
FORC55_1950	COG3052	prosthetic group binding
FORC55_1951	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
FORC55_1953	COG3630	sodium ion export across plasma membrane
FORC55_1954	COG5016	pyruvate
FORC55_1954	COG0511	ligase activity, forming carbon-carbon bonds
FORC55_1955	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
FORC55_1957	COG4565	transcriptional regulatory protein
FORC55_1960	COG0583	DNA-binding transcription factor activity
FORC55_1961	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FORC55_1962	COG1115	amino acid carrier protein
FORC55_1963	COG2977	Belongs to the P-Pant transferase superfamily
FORC55_1964	COG1120	ATPase activity
FORC55_1965	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FORC55_1966	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FORC55_1967	COG4592	Periplasmic binding protein
FORC55_1969	COG1028	Short-chain dehydrogenase reductase Sdr
FORC55_1970	COG1169	isochorismate synthase
FORC55_1971	COG1021	2,3-dihydroxybenzoate-AMP ligase
FORC55_1972	COG1535	isochorismatase
FORC55_1972	COG3433	isochorismatase activity
FORC55_1973	COG1584	GPR1 FUN34 yaaH family protein
FORC55_1975	COG0519	Catalyzes the synthesis of GMP from XMP
FORC55_1975	COG0518	GMP synthase (glutamine-hydrolyzing) activity
FORC55_1976	COG0517	IMP dehydrogenase activity
FORC55_1976	COG0516	GMP reductase activity
FORC55_1977	COG1570	exodeoxyribonuclease VII activity
FORC55_1980	COG1160	GTP binding
FORC55_1981	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FORC55_1982	COG2976	Protein conserved in bacteria
FORC55_1983	COG0124	histidyl-tRNA synthetase
FORC55_1984	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
FORC55_1986	COG0820	rRNA (adenine-C2-)-methyltransferase activity
FORC55_1987	COG0105	UTP biosynthetic process
FORC55_1988	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
FORC55_1989	COG2975	iron-sulfur cluster assembly
FORC55_1990	COG0633	Ferredoxin
FORC55_1994	COG0822	iron-sulfur transferase activity
FORC55_1996	COG1959	2 iron, 2 sulfur cluster binding
FORC55_1998	COG0483	inositol monophosphate 1-phosphatase activity
FORC55_1999	COG3385	transposase activity
FORC55_2000	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FORC55_2001	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FORC55_2002	COG1862	Preprotein translocase
FORC55_2003	COG0343	queuine tRNA-ribosyltransferase activity
FORC55_2005	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
FORC55_2006	COG0517	IMP dehydrogenase activity
FORC55_2008	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
FORC55_2009	COG0583	DNA-binding transcription factor activity
FORC55_2010	COG0450	alkyl hydroperoxide reductase
FORC55_2011	COG3142	Participates in the control of copper homeostasis
FORC55_2014	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FORC55_2015	COG0581	inorganic phosphate transmembrane transporter activity
FORC55_2017	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
FORC55_2018	COG0248	Ppx GppA phosphatase
FORC55_2020	COG5002	protein histidine kinase activity
FORC55_2021	COG0745	RESPONSE REGULATOR receiver
FORC55_2022	COG2974	May be involved in recombination
FORC55_2024	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FORC55_2028	COG0542	response to heat
FORC55_2030	COG0564	pseudouridine synthase activity
FORC55_2031	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
FORC55_2032	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FORC55_2033	COG1605	Chorismate mutase
FORC55_2033	COG0077	Prephenate dehydratase
FORC55_2034	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FORC55_2035	COG5001	Diguanylate cyclase
FORC55_2036	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
FORC55_2037	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
FORC55_2039	COG0488	(ABC) transporter
FORC55_2041	COG1605	Chorismate mutase
FORC55_2041	COG0287	Prephenate dehydrogenase
FORC55_2042	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FORC55_2043	COG3275	phosphorelay sensor kinase activity
FORC55_2044	COG3279	Response regulator of the LytR AlgR family
FORC55_2045	COG1472	Belongs to the glycosyl hydrolase 3 family
FORC55_2046	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
FORC55_2047	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
FORC55_2050	COG1966	Carbon starvation protein
FORC55_2051	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
FORC55_2052	COG1047	Peptidyl-prolyl cis-trans
FORC55_2053	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
FORC55_2054	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
FORC55_2055	COG0196	riboflavin kinase activity
FORC55_2056	COG0728	peptidoglycan biosynthetic process
FORC55_2057	COG0268	Binds directly to 16S ribosomal RNA
FORC55_2058	COG0640	Transcriptional regulator
FORC55_2059	COG0583	DNA-binding transcription factor activity
FORC55_2060	COG1283	sodium-dependent phosphate transmembrane transporter activity
FORC55_2061	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
FORC55_2062	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
FORC55_2063	COG0730	response to heat
FORC55_2064	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
FORC55_2065	COG0494	nUDIX hydrolase
FORC55_2067	COG3066	DNA modification
FORC55_2068	COG0667	Aldo Keto reductase
FORC55_2070	COG2204	response regulator
FORC55_2071	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
FORC55_2072	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
FORC55_2074	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FORC55_2075	COG0513	Belongs to the DEAD box helicase family
FORC55_2076	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
FORC55_2084	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
FORC55_2086	COG0840	transmembrane signaling receptor activity
FORC55_2095	COG0745	RESPONSE REGULATOR receiver
FORC55_2095	COG3706	GGDEF domain
FORC55_2098	COG2433	Pfam Transposase IS66
FORC55_2105	COG2003	Belongs to the UPF0758 family
FORC55_2110	COG0714	Associated with various cellular activities
FORC55_2113	COG0629	single-stranded DNA binding
FORC55_2116	COG2433	Pfam Transposase IS66
FORC55_2121	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FORC55_2125	COG3706	GGDEF domain
FORC55_2126	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FORC55_2128	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
FORC55_2131	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FORC55_2132	COG4325	translation initiation factor activity
FORC55_2138	COG2433	Pfam Transposase IS66
FORC55_2142	COG0681	Belongs to the peptidase S26 family
FORC55_2145	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FORC55_2162	COG3550	peptidyl-serine autophosphorylation
FORC55_2163	COG3620	sequence-specific DNA binding
FORC55_2167	COG3153	acetyltransferase
FORC55_2174	COG4785	May be involved in cell division
FORC55_2175	COG1185	polyribonucleotide nucleotidyltransferase activity
FORC55_2176	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
FORC55_2177	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
FORC55_2178	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
FORC55_2179	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
FORC55_2180	COG0195	Participates in both transcription termination and antitermination
FORC55_2181	COG0779	Required for maturation of 30S ribosomal subunits
FORC55_2182	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FORC55_2184	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FORC55_2185	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
FORC55_2186	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FORC55_2187	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
FORC55_2188	COG1534	Rna-binding protein
FORC55_2189	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FORC55_2190	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FORC55_2191	COG2027	D-alanyl-D-alanine carboxypeptidase
FORC55_2192	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FORC55_2193	COG0739	heme binding
FORC55_2196	COG0316	Belongs to the HesB IscA family
FORC55_2197	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
FORC55_2198	COG0628	permease
FORC55_2199	COG2813	Specifically methylates the guanine in position
FORC55_2201	COG0747	negative chemotaxis
FORC55_2202	COG0601	transmembrane transport
FORC55_2203	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FORC55_2204	COG0444	Belongs to the ABC transporter superfamily
FORC55_2205	COG4608	Belongs to the ABC transporter superfamily
FORC55_2207	COG2971	BadF BadG BcrA BcrD
FORC55_2211	COG3842	ATPase activity
FORC55_2213	COG1840	ABC-type Fe3 transport system, periplasmic component
FORC55_2214	COG0004	ammonium transporteR
FORC55_2215	COG0347	Belongs to the P(II) protein family
FORC55_2216	COG3112	Uncharacterised protein family (UPF0231)
FORC55_2217	COG1049	propionate catabolic process, 2-methylcitrate cycle
FORC55_2218	COG1752	Esterase of the alpha-beta hydrolase superfamily
FORC55_2219	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FORC55_2220	COG1643	Atp-dependent helicase
FORC55_2222	COG1489	DNA binding
FORC55_2223	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FORC55_2224	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
FORC55_2226	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FORC55_2227	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
FORC55_2228	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
FORC55_2229	COG0842	Transport permease protein
FORC55_2230	COG1131	(ABC) transporter
FORC55_2231	COG0659	secondary active sulfate transmembrane transporter activity
FORC55_2232	COG0288	reversible hydration of carbon dioxide
FORC55_2235	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
FORC55_2236	COG3107	peptidoglycan biosynthetic process
FORC55_2237	COG0792	nuclease activity
FORC55_2238	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
FORC55_2239	COG2823	Periplasmic or secreted lipoprotein
FORC55_2240	COG2969	positive regulation of protein catabolic process
FORC55_2241	COG0625	glutathione transferase activity
FORC55_2242	COG2857	Cytochrome c1
FORC55_2243	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FORC55_2244	COG0723	plastoquinol--plastocyanin reductase activity
FORC55_2245	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
FORC55_2246	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
FORC55_2247	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
FORC55_2249	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FORC55_2250	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FORC55_2251	COG3385	transposase activity
FORC55_2252	COG0335	large ribosomal subunit rRNA binding
FORC55_2253	COG0336	Belongs to the RNA methyltransferase TrmD family
FORC55_2254	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
FORC55_2255	COG0228	four-way junction DNA binding
FORC55_2256	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FORC55_2257	COG4137	Cytochrome C assembly protein
FORC55_2258	COG4536	flavin adenine dinucleotide binding
FORC55_2259	COG1854	S-ribosylhomocysteine lyase activity
FORC55_2260	COG2918	glutathione biosynthetic process
FORC55_2261	COG0612	Peptidase, M16
FORC55_2262	COG1238	metal cluster binding
FORC55_2264	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
FORC55_2265	COG5016	pyruvate
FORC55_2265	COG0511	ligase activity, forming carbon-carbon bonds
FORC55_2266	COG3630	sodium ion export across plasma membrane
FORC55_2267	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
FORC55_2268	COG0527	aspartate kinase activity
FORC55_2269	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FORC55_2270	COG2137	regulation of response to DNA damage stimulus
FORC55_2271	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
FORC55_2273	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
FORC55_2274	COG4208	sulfate ABC transporter
FORC55_2278	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
FORC55_2279	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FORC55_2280	COG1388	LysM domain
FORC55_2280	COG4942	peptidase
FORC55_2281	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
FORC55_2282	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
FORC55_2283	COG0585	pseudouridine synthase activity
FORC55_2284	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
FORC55_2285	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
FORC55_2286	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
FORC55_2287	COG1968	undecaprenyl-diphosphatase activity
FORC55_2288	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FORC55_2289	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
FORC55_2290	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
FORC55_2292	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
FORC55_2294	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FORC55_2295	COG1610	YqeY-like protein
FORC55_2298	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FORC55_2300	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
FORC55_2301	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
FORC55_2302	COG1349	DNA-binding transcription factor activity
FORC55_2303	COG0469	pyruvate kinase activity
FORC55_2305	COG0583	DNA-binding transcription factor activity
FORC55_2306	COG1279	arginine transmembrane transporter activity
FORC55_2307	COG0668	transmembrane transport
FORC55_2308	COG0191	fructose-bisphosphate aldolase activity
FORC55_2310	COG0126	phosphoglycerate kinase activity
FORC55_2311	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FORC55_2312	COG4771	TonB-dependent receptor
FORC55_2313	COG0583	DNA-binding transcription factor activity
FORC55_2314	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FORC55_2316	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
FORC55_2317	COG3091	SprT-like family
FORC55_2318	COG2356	endonuclease I
FORC55_2319	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FORC55_2320	COG0189	ligase activity
FORC55_2321	COG1678	Uncharacterized ACR, COG1678
FORC55_2322	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
FORC55_2323	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FORC55_2327	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FORC55_2328	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FORC55_2329	COG0762	integral membrane protein
FORC55_2330	COG1872	DUF167
FORC55_2332	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
FORC55_2333	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FORC55_2334	COG2066	Belongs to the glutaminase family
FORC55_2335	COG0220	tRNA (guanine-N7-)-methyltransferase activity
FORC55_2337	COG1194	a g-specific adenine glycosylase
FORC55_2338	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
FORC55_2339	COG0741	lytic transglycosylase activity
FORC55_2340	COG0840	transmembrane signaling receptor activity
FORC55_2341	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
FORC55_2342	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
FORC55_2343	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FORC55_2344	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
FORC55_2345	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
FORC55_2346	COG2967	ApaG domain
FORC55_2347	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FORC55_2349	COG3610	response to peptide
FORC55_2350	COG2966	Psort location CytoplasmicMembrane, score
FORC55_2351	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
FORC55_2352	COG0211	Belongs to the bacterial ribosomal protein bL27 family
FORC55_2353	COG0261	This protein binds to 23S rRNA in the presence of protein L20
FORC55_2354	COG0142	geranyltranstransferase activity
FORC55_2355	COG0531	amino acid
FORC55_2356	COG0039	L-malate dehydrogenase activity
FORC55_2357	COG1438	arginine binding
FORC55_2360	COG0589	response to stress
FORC55_2364	COG2235	arginine
FORC55_2365	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FORC55_2366	COG1151	hydroxylamine reductase activity
FORC55_2367	COG0312	modulator of DNA gyrase
FORC55_2368	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FORC55_2369	COG3164	Protein of unknown function
FORC55_2370	COG1530	ribonuclease E activity
FORC55_2371	COG0424	maF-like protein
FORC55_2372	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
FORC55_2373	COG1792	Involved in formation and maintenance of cell shape
FORC55_2374	COG1077	Cell shape determining protein MreB Mrl
FORC55_2383	COG1459	type II secretion system
FORC55_2384	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FORC55_2386	COG3267	Type II secretory pathway component ExeA
FORC55_2386	COG3409	Peptidoglycan-binding domain 1 protein
FORC55_2391	COG2199	diguanylate cyclase activity
FORC55_2391	COG2200	EAL domain
FORC55_2392	COG0629	single-stranded DNA binding
FORC55_2395	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FORC55_2397	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FORC55_2398	COG0527	aspartate kinase activity
FORC55_2399	COG0646	methionine synthase
FORC55_2399	COG1410	methionine synthase
FORC55_2401	COG0175	sulfate reduction
FORC55_2402	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FORC55_2403	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
FORC55_2408	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FORC55_2409	COG0735	belongs to the Fur family
FORC55_2412	COG0166	Belongs to the GPI family
FORC55_2413	COG0432	Pfam Uncharacterised protein family UPF0047
FORC55_2414	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FORC55_2415	COG0305	Participates in initiation and elongation during chromosome replication
FORC55_2417	COG0359	binds to the 23S rRNA
FORC55_2418	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
FORC55_2419	COG2965	DNA replication, synthesis of RNA primer
FORC55_2420	COG0360	Binds together with S18 to 16S ribosomal RNA
FORC55_2422	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FORC55_2423	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
FORC55_2424	COG0049	tRNA binding
FORC55_2425	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
FORC55_2427	COG2923	Belongs to the DsrF TusC family
FORC55_2428	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
FORC55_2429	COG2964	Protein conserved in bacteria
FORC55_2430	COG0545	Peptidyl-prolyl cis-trans isomerase
FORC55_2432	COG2900	Belongs to the SlyX family
FORC55_2433	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
FORC55_2434	COG0330	HflC and HflK could
FORC55_2435	COG0330	HflC and HflK could
FORC55_2436	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FORC55_2437	COG1923	regulation of RNA biosynthetic process
FORC55_2438	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
FORC55_2439	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
FORC55_2441	COG0802	atpase or kinase
FORC55_2442	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FORC55_2443	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
FORC55_2444	COG1162	GTPase activity
FORC55_2445	COG0688	phosphatidylethanolamine metabolic process
FORC55_2446	COG0471	metal ion transport
FORC55_2448	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
FORC55_2449	COG4942	peptidase
FORC55_2452	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
FORC55_2453	COG2816	NAD+ diphosphatase activity
FORC55_2454	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
FORC55_2455	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
FORC55_2456	COG0085	RNA polymerase activity
FORC55_2457	COG0222	ribosome binding
FORC55_2458	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
FORC55_2459	COG0081	regulation of translation
FORC55_2460	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
FORC55_2461	COG0250	Participates in transcription elongation, termination and antitermination
FORC55_2462	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FORC55_2463	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
FORC55_2464	COG1072	(Pantothenic acid kinase))
FORC55_2466	COG0812	UDP-N-acetylmuramate dehydrogenase activity
FORC55_2468	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FORC55_2471	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
FORC55_2473	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FORC55_2474	COG3118	belongs to the thioredoxin family
FORC55_2475	COG0513	Belongs to the DEAD box helicase family
FORC55_2476	COG0248	Ppx GppA phosphatase
FORC55_2477	COG2205	protein histidine kinase activity
FORC55_2477	COG0784	Response regulator, receiver
FORC55_2478	COG2814	Major facilitator Superfamily
FORC55_2481	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FORC55_2482	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
FORC55_2483	COG0511	ligase activity, forming carbon-carbon bonds
FORC55_2484	COG0439	Biotin carboxylase
FORC55_2485	COG2264	protein methyltransferase activity
FORC55_2486	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FORC55_2487	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
FORC55_2488	COG1609	Transcriptional regulator
FORC55_2491	COG0387	Pfam Sodium calcium exchanger
FORC55_2492	COG0129	dihydroxy-acid dehydratase activity
FORC55_2493	COG3265	gluconokinase activity
FORC55_2495	COG0800	Aldolase
FORC55_2498	COG0840	transmembrane signaling receptor activity
FORC55_2499	COG1982	Orn Lys Arg decarboxylase major
FORC55_2500	COG0531	amino acid
FORC55_2502	COG3710	Transcriptional regulator
FORC55_2503	COG0789	Transcriptional regulator
FORC55_2505	COG0138	bifunctional purine biosynthesis protein purh
FORC55_2506	COG0151	Belongs to the GarS family
FORC55_2508	COG0776	regulation of translation
FORC55_2509	COG1253	flavin adenine dinucleotide binding
FORC55_2511	COG3068	Protein conserved in bacteria
FORC55_2513	COG1573	uracil-dna glycosylase
FORC55_2514	COG0668	transmembrane transport
FORC55_2518	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
FORC55_2520	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FORC55_2525	COG1086	Polysaccharide biosynthesis protein
FORC55_2528	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FORC55_2528	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
FORC55_2531	COG0110	maltose O-acetyltransferase activity
FORC55_2533	COG2089	acid synthase
FORC55_2536	COG1083	cytidylyl-transferase
FORC55_2537	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FORC55_2539	COG5433	transposase activity
FORC55_2540	COG5433	transposase activity
FORC55_2542	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FORC55_2549	COG1519	Transferase
FORC55_2555	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
FORC55_2555	COG2755	lipolytic protein G-D-S-L family
FORC55_2556	COG3642	lipopolysaccharide core region biosynthetic process
FORC55_2557	COG0859	PFAM glycosyl transferase family 9
FORC55_2558	COG0463	Glycosyl transferase, family 2
FORC55_2559	COG0859	PFAM glycosyl transferase family 9
FORC55_2560	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
FORC55_2561	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
FORC55_2563	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FORC55_2564	COG0227	Belongs to the bacterial ribosomal protein bL28 family
FORC55_2566	COG0840	transmembrane signaling receptor activity
FORC55_2567	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FORC55_2568	COG1309	transcriptional regulator
FORC55_2569	COG1560	Kdo2-lipid A biosynthetic process
FORC55_2570	COG1560	Kdo2-lipid A biosynthetic process
FORC55_2571	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
FORC55_2572	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
FORC55_2573	COG1561	YicC-like family, N-terminal region
FORC55_2577	COG2856	Zn peptidase
FORC55_2582	COG1288	antiporter activity
FORC55_2602	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FORC55_2602	COG1263	PTS System
FORC55_2603	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
FORC55_2606	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FORC55_2607	COG1120	ATPase activity
FORC55_2608	COG4774	siderophore transport
FORC55_2609	COG1132	(ABC) transporter
FORC55_2612	COG0514	ATP-dependent DNA helicase (RecQ)
FORC55_2613	COG2962	Rard protein
FORC55_2614	COG0405	Gamma-glutamyltransferase
FORC55_2616	COG1280	lysine exporter protein (LysE YggA)
FORC55_2617	COG0210	DNA helicase
FORC55_2619	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
FORC55_2620	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FORC55_2623	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FORC55_2625	COG0747	negative chemotaxis
FORC55_2630	COG1309	transcriptional regulator
FORC55_2631	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
FORC55_2632	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FORC55_2633	COG2960	long-chain fatty acid transporting porin activity
FORC55_2634	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
FORC55_2635	COG0583	DNA-binding transcription factor activity
FORC55_2637	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
FORC55_2638	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FORC55_2639	COG1739	Uncharacterized protein family UPF0029
FORC55_2640	COG1024	Enoyl-CoA hydratase
FORC55_2640	COG1250	3-hydroxyacyl-CoA dehydrogenase
FORC55_2641	COG0183	Belongs to the thiolase family
FORC55_2642	COG0583	DNA-binding transcription factor activity
FORC55_2643	COG2814	Major facilitator Superfamily
FORC55_2645	COG0355	proton-transporting ATP synthase activity, rotational mechanism
FORC55_2646	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
FORC55_2647	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
FORC55_2648	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
FORC55_2649	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
FORC55_2650	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
FORC55_2652	COG0356	it plays a direct role in the translocation of protons across the membrane
FORC55_2653	COG3312	ion transport
FORC55_2654	COG1475	DNA binding
FORC55_2655	COG1192	Involved in chromosome partitioning
FORC55_2656	COG0357	Ribosomal RNA small subunit methyltransferase G
FORC55_2657	COG0445	tRNA wobble uridine modification
FORC55_2658	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
FORC55_2672	COG2433	Pfam Transposase IS66
FORC55_2675	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
FORC55_2682	COG4974	Belongs to the 'phage' integrase family
FORC55_2683	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
FORC55_2684	COG0706	membrane insertase activity
FORC55_2685	COG0594	ribonuclease P activity
FORC55_2686	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FORC55_2687	COG1126	abc transporter atp-binding protein
FORC55_2696	COG0217	transcriptional regulatory protein
FORC55_2697	COG2084	Dehydrogenase
FORC55_2700	COG2909	trisaccharide binding
FORC55_2701	COG0058	SHG alpha-glucan phosphorylase activity
FORC55_2702	COG1640	4-alpha-glucanotransferase
FORC55_2703	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
FORC55_2705	COG3501	Rhs element vgr protein
FORC55_2712	COG0471	metal ion transport
FORC55_2713	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
FORC55_2723	COG0671	phosphoesterase, PA-phosphatase related
FORC55_2724	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
FORC55_2726	COG1999	signal sequence binding
FORC55_2729	COG0786	glutamate:sodium symporter activity
FORC55_2733	COG3706	GGDEF domain
FORC55_2736	COG0813	purine-nucleoside phosphorylase activity
FORC55_2737	COG3272	Protein of unknown function (DUF1722)
FORC55_2739	COG0415	Belongs to the DNA photolyase family
FORC55_2740	COG1388	LysM domain
FORC55_2740	COG1376	ErfK ybiS ycfS ynhG family protein
FORC55_2742	COG0513	Belongs to the DEAD box helicase family
FORC55_2743	COG1770	oligopeptidase
FORC55_2748	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FORC55_2749	COG0573	inorganic phosphate transmembrane transporter activity
FORC55_2750	COG0581	inorganic phosphate transmembrane transporter activity
FORC55_2751	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
FORC55_2755	COG0659	secondary active sulfate transmembrane transporter activity
FORC55_2757	COG0739	heme binding
FORC55_2758	COG2203	Gaf domain
FORC55_2758	COG4251	negative regulation of phosphorylation
FORC55_2758	COG5001	Diguanylate cyclase
FORC55_2758	COG3706	GGDEF domain
FORC55_2759	COG2203	Gaf domain
FORC55_2759	COG2199	diguanylate cyclase activity
FORC55_2760	COG0583	DNA-binding transcription factor activity
FORC55_2761	COG2814	Major facilitator Superfamily
FORC55_2765	COG1301	dicarboxylic acid transport
FORC55_2767	COG1342	Belongs to the UPF0251 family
FORC55_2773	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
FORC55_2774	COG0673	inositol 2-dehydrogenase activity
FORC55_2776	COG2200	EAL domain
FORC55_2776	COG2771	luxR family
FORC55_2777	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FORC55_2779	COG0564	pseudouridine synthase activity
FORC55_2798	COG3501	Rhs element vgr protein
FORC55_2803	COG2433	Pfam Transposase IS66
FORC55_2806	COG1869	D-ribose catabolic process
FORC55_2807	COG1129	ABC transporter
FORC55_2808	COG1172	Belongs to the binding-protein-dependent transport system permease family
FORC55_2809	COG1879	ABC-type sugar transport system periplasmic component
FORC55_2810	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FORC55_2811	COG1609	Transcriptional regulator
FORC55_2816	COG0584	glycerophosphoryl diester phosphodiesterase
FORC55_2817	COG2271	Major facilitator Superfamily
FORC55_2824	COG0579	oxidoreductase
FORC55_2826	COG0242	peptide deformylase activity
FORC55_2829	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FORC55_2830	COG1609	Transcriptional regulator
FORC55_2831	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FORC55_2831	COG1017	nitric oxide dioxygenase activity
FORC55_2832	COG1320	monovalent cation:proton antiporter activity
FORC55_2833	COG2212	antiporter activity
FORC55_2837	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FORC55_2837	COG2111	Na H antiporter
FORC55_2839	COG0589	response to stress
FORC55_2840	COG0814	amino acid
FORC55_2841	COG3033	Beta-eliminating lyase
FORC55_2843	COG3530	Putative quorum-sensing-regulated virulence factor
FORC55_2845	COG5002	protein histidine kinase activity
FORC55_2845	COG5001	Diguanylate cyclase
FORC55_2846	COG1278	Cold shock
FORC55_2849	COG2304	oxidoreductase activity
FORC55_2853	COG0714	Associated with various cellular activities
FORC55_2854	COG0840	transmembrane signaling receptor activity
FORC55_2857	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FORC55_2859	COG2195	Cleaves the N-terminal amino acid of tripeptides
FORC55_2861	COG3604	Transcriptional regulator
FORC55_2862	COG1017	nitric oxide dioxygenase activity
FORC55_2862	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
FORC55_2863	COG1278	Cold shock
FORC55_2864	COG3036	rescue of stalled ribosome
FORC55_2866	COG3385	transposase activity
FORC55_2870	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
FORC55_2870	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
FORC55_2871	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FORC55_2873	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FORC55_2876	COG0516	GMP reductase activity
FORC55_2882	COG0513	Belongs to the DEAD box helicase family
FORC55_2883	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
FORC55_2884	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
FORC55_2885	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
FORC55_2886	COG3437	response regulator, receiver
FORC55_2886	COG0784	Response regulator, receiver
FORC55_2887	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FORC55_2887	COG4191	Histidine kinase
FORC55_2889	COG1757	Na H antiporter
FORC55_2890	COG2814	Major facilitator Superfamily
FORC55_2893	COG3706	GGDEF domain
FORC55_2894	COG3240	lipase activity
FORC55_2896	COG0840	transmembrane signaling receptor activity
FORC55_2897	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
FORC55_2898	COG5380	lipid catabolic process
FORC55_2899	COG3291	Pkd domain containing protein
FORC55_2899	COG4412	M6 family metalloprotease domain protein
FORC55_2903	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FORC55_2904	COG4605	iron ion homeostasis
FORC55_2905	COG4604	ABC transporter, ATP-binding protein
FORC55_2908	COG3385	transposase activity
FORC55_2910	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
FORC55_2919	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FORC55_2920	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
FORC55_2928	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FORC55_2930	COG2433	Pfam Transposase IS66
FORC55_2933	COG1484	DNA-dependent DNA replication
FORC55_2934	COG4584	PFAM Integrase catalytic
FORC55_2941	COG2916	Histone family protein nucleoid-structuring protein H-NS
FORC55_2947	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
FORC55_2948	COG3335	DDE superfamily endonuclease
FORC55_2949	COG3550	peptidyl-serine autophosphorylation
FORC55_2955	COG0745	RESPONSE REGULATOR receiver
FORC55_2957	COG3623	hexulose-6-phosphate isomerase
FORC55_2958	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
FORC55_2959	COG0561	phosphatase activity
FORC55_2968	COG0745	RESPONSE REGULATOR receiver
FORC55_2969	COG5002	protein histidine kinase activity
FORC55_2972	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FORC55_2980	COG1686	Belongs to the peptidase S11 family
FORC55_2984	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
FORC55_2984	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
FORC55_2985	COG0509	glycine decarboxylation via glycine cleavage system
FORC55_2986	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
FORC55_2988	COG0404	The glycine cleavage system catalyzes the degradation of glycine
FORC55_2989	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FORC55_2991	COG0291	Belongs to the bacterial ribosomal protein bL35 family
FORC55_2992	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
FORC55_3009	COG3040	lipid binding
FORC55_3030	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FORC55_3041	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FORC55_3054	COG4372	Transposase
FORC55_3057	COG2433	Pfam Transposase IS66
FORC55_3058	COG2433	Pfam Transposase IS66
FORC55_3070	COG1619	proteins homologs of microcin C7 resistance protein MccF
FORC55_3083	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FORC55_3086	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FORC55_3089	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
FORC55_3090	COG2944	sequence-specific DNA binding
FORC55_3107	COG1484	DNA-dependent DNA replication
FORC55_3108	COG4584	PFAM Integrase catalytic
FORC55_3122	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FORC55_3127	COG2433	Pfam Transposase IS66
FORC55_3140	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FORC55_3142	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FORC55_3150	COG1328	CTP reductase activity
FORC55_3151	COG0602	queuosine metabolic process
FORC55_3153	COG0189	ligase activity
FORC55_3153	COG4067	protein conserved in archaea
FORC55_3154	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FORC55_3154	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
FORC55_3154	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FORC55_3155	COG1105	Belongs to the carbohydrate kinase PfkB family
FORC55_3156	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
FORC55_3156	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FORC55_3157	COG1609	Transcriptional regulator
FORC55_3158	COG0420	3'-5' exonuclease activity
FORC55_3159	COG0419	ATPase involved in DNA repair
FORC55_3160	COG2205	protein histidine kinase activity
FORC55_3160	COG0784	Response regulator, receiver
FORC55_3161	COG0156	8-amino-7-oxononanoate synthase activity
FORC55_3162	COG2433	Pfam Transposase IS66
FORC55_3165	COG0156	8-amino-7-oxononanoate synthase activity
FORC55_3167	COG0038	chloride channel
FORC55_3168	COG0523	cobalamin synthesis protein
FORC55_3171	COG2200	EAL domain
FORC55_3173	COG3038	cytochrome b561
FORC55_3175	COG3385	transposase activity
FORC55_3176	COG2116	formate transmembrane transporter activity
FORC55_3177	COG0583	DNA-binding transcription factor activity
FORC55_3179	COG3593	DNA synthesis involved in DNA repair
FORC55_3181	COG0737	Belongs to the 5'-nucleotidase family
FORC55_3184	COG2824	Alkylphosphonate utilization operon protein PhnA
FORC55_3194	COG3706	GGDEF domain
FORC55_3197	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
FORC55_3198	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
FORC55_3200	COG0745	RESPONSE REGULATOR receiver
FORC55_3204	COG1943	Transposase
FORC55_3205	COG0023	Translation Initiation Factor
FORC55_3207	COG1181	Belongs to the D-alanine--D-alanine ligase family
FORC55_3209	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FORC55_3209	COG1042	CoA-binding domain protein
FORC55_3209	COG0045	succinate-CoA ligase (ADP-forming) activity
FORC55_3210	COG0583	DNA-binding transcription factor activity
FORC55_3214	COG2050	protein possibly involved in aromatic compounds catabolism
FORC55_3219	COG0625	glutathione transferase activity
FORC55_3222	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
FORC55_3223	COG4172	Belongs to the ABC transporter superfamily
FORC55_3224	COG4239	(ABC) transporter, permease
FORC55_3225	COG4174	ABC transporter (Permease)
FORC55_3226	COG4166	transmembrane transport
FORC55_3227	COG4166	transmembrane transport
FORC55_3237	COG3842	ATPase activity
FORC55_3239	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FORC55_3241	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FORC55_3242	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
FORC55_3244	COG3842	ATPase activity
FORC55_3246	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
FORC55_3249	COG1175	transmembrane transport
FORC55_3250	COG3833	ABC-type maltose transport systems, permease component
FORC55_3254	COG1011	Hydrolase
FORC55_3256	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
FORC55_3257	COG1970	mechanosensitive ion channel activity
FORC55_3258	COG2759	Belongs to the formate--tetrahydrofolate ligase family
FORC55_3259	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FORC55_3259	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FORC55_3260	COG0302	gtp cyclohydrolase
FORC55_3262	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FORC55_3264	COG2897	thiosulfate sulfurtransferase activity
FORC55_3266	COG2390	Transcriptional regulator
FORC55_3267	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FORC55_3268	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
FORC55_3275	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FORC55_3280	COG0583	DNA-binding transcription factor activity
FORC55_3281	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
FORC55_3282	COG0778	Nitroreductase
FORC55_3288	COG0640	Transcriptional regulator
FORC55_3290	COG0446	pyridine nucleotide-disulphide oxidoreductase
FORC55_3299	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FORC55_3299	COG1263	PTS System
FORC55_3301	COG1621	beta-fructofuranosidase activity
FORC55_3302	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FORC55_3303	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FORC55_3304	COG0840	transmembrane signaling receptor activity
FORC55_3306	COG0545	Peptidyl-prolyl cis-trans isomerase
FORC55_3307	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FORC55_3312	COG3069	C4-dicarboxylate transmembrane transporter activity
FORC55_3313	COG1760	l-serine dehydratase
FORC55_3314	COG2197	response regulator
FORC55_3315	COG3850	Histidine kinase
FORC55_3316	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
FORC55_3318	COG0243	molybdopterin cofactor binding
FORC55_3321	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
FORC55_3322	COG2197	response regulator
FORC55_3323	COG3851	Histidine kinase
FORC55_3324	COG2271	Major facilitator Superfamily
FORC55_3325	COG1840	ABC-type Fe3 transport system, periplasmic component
FORC55_3327	COG3842	ATPase activity
FORC55_3328	COG3243	poly(R)-hydroxyalkanoic acid synthase
FORC55_3330	COG0183	Belongs to the thiolase family
FORC55_3333	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FORC55_3334	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FORC55_3337	COG3706	GGDEF domain
FORC55_3338	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
FORC55_3340	COG1979	alcohol dehydrogenase
FORC55_3343	COG4191	Histidine kinase
FORC55_3344	COG1840	ABC-type Fe3 transport system, periplasmic component
FORC55_3345	COG2271	Major facilitator Superfamily
FORC55_3346	COG0469	pyruvate kinase activity
FORC55_3347	COG2205	protein histidine kinase activity
FORC55_3347	COG2198	Histidine kinase
FORC55_3347	COG0784	Response regulator, receiver
FORC55_3348	COG1879	ABC-type sugar transport system periplasmic component
FORC55_3349	COG1803	Methylglyoxal synthase
FORC55_3350	COG1335	isochorismatase
FORC55_3351	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
FORC55_3352	COG0210	DNA helicase
FORC55_3353	COG1289	transmembrane transporter activity
FORC55_3354	COG4191	Histidine kinase
FORC55_3359	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
FORC55_3360	COG4149	molybdate abc transporter
FORC55_3361	COG0725	ABC transporter, periplasmic molybdate-binding protein
FORC55_3362	COG1492	cobalamin metabolic process
FORC55_3368	COG5002	protein histidine kinase activity
FORC55_3368	COG0784	Response regulator, receiver
FORC55_3369	COG1879	ABC-type sugar transport system periplasmic component
FORC55_3371	COG2827	Endonuclease containing a URI domain
FORC55_3372	COG3132	Protein of unknown function, DUF480
FORC55_3378	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
FORC55_3379	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FORC55_3380	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
FORC55_3381	COG0247	lactate metabolic process
FORC55_3382	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FORC55_3383	COG3118	belongs to the thioredoxin family
FORC55_3388	COG4160	amino acid transport
FORC55_3389	COG4215	(ABC) transporter
FORC55_3390	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FORC55_3391	COG1126	abc transporter atp-binding protein
FORC55_3393	COG2425	protein containing a von Willebrand factor type A (vWA) domain
FORC55_3395	COG0494	nUDIX hydrolase
FORC55_3396	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
FORC55_3398	COG1309	transcriptional regulator
FORC55_3399	COG0513	Belongs to the DEAD box helicase family
FORC55_3400	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
FORC55_3401	COG0814	amino acid
FORC55_3403	COG0840	transmembrane signaling receptor activity
FORC55_3404	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FORC55_3405	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
FORC55_3407	COG1984	allophanate hydrolase subunit 2
FORC55_3410	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
FORC55_3411	COG4181	ATPase activity
FORC55_3413	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
FORC55_3414	COG5001	Diguanylate cyclase
FORC55_3414	COG1716	ATPase activity
FORC55_3416	COG0484	heat shock protein binding
FORC55_3419	COG0546	phosphoglycolate phosphatase activity
FORC55_3422	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FORC55_3424	COG0513	Belongs to the DEAD box helicase family
FORC55_3425	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
FORC55_3427	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FORC55_3429	COG3046	protein related to deoxyribodipyrimidine photolyase
FORC55_3430	COG3397	chitin binding
FORC55_3433	COG0010	Belongs to the arginase family
FORC55_3434	COG1166	arginine decarboxylase activity
FORC55_3436	COG2239	Acts as a magnesium transporter
FORC55_3437	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
FORC55_3438	COG0459	protein refolding
FORC55_3440	COG0527	aspartate kinase activity
FORC55_3441	COG0662	Cupin 2, conserved barrel domain protein
FORC55_3442	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FORC55_3443	COG0456	acetyltransferase
FORC55_3444	COG2154	pterin-4-alpha-carbinolamine dehydratase
FORC55_3445	COG3186	Phenylalanine-4-hydroxylase
FORC55_3446	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FORC55_3449	COG2264	protein methyltransferase activity
FORC55_3450	COG0583	DNA-binding transcription factor activity
FORC55_3453	COG2171	N-acyltransferase activity
FORC55_3454	COG1253	flavin adenine dinucleotide binding
FORC55_3455	COG1765	OsmC-like protein
FORC55_3461	COG0531	amino acid
FORC55_3463	COG4989	oxidoreductase activity
FORC55_3464	COG0366	Alpha amylase catalytic
FORC55_3465	COG2067	long-chain fatty acid transport protein
FORC55_3466	COG2267	carboxylic ester hydrolase activity
FORC55_3467	COG2267	carboxylic ester hydrolase activity
FORC55_3469	COG3227	Zinc metalloprotease (Elastase)
FORC55_3470	COG3047	cAMP biosynthetic process
FORC55_3473	COG1686	Belongs to the peptidase S11 family
FORC55_3474	COG0557	exoribonuclease II activity
FORC55_3475	COG1278	Cold shock
FORC55_3477	COG2200	EAL domain
FORC55_3477	COG2771	luxR family
FORC55_3478	COG1063	alcohol dehydrogenase
FORC55_3480	COG2873	o-acetylhomoserine
FORC55_3482	COG0346	lactoylglutathione lyase activity
FORC55_3486	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FORC55_3488	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
FORC55_3489	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
FORC55_3490	COG0363	glucosamine-6-phosphate deaminase activity
FORC55_3491	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
FORC55_3495	COG1929	Belongs to the glycerate kinase type-1 family
FORC55_3497	COG0748	coenzyme F420 binding
FORC55_3498	COG3721	Heme iron utilization protein
FORC55_3500	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
FORC55_3501	COG0811	peptide transport
FORC55_3502	COG0848	biopolymer transport protein
FORC55_3503	COG4558	Periplasmic binding protein
FORC55_3504	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FORC55_3505	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
FORC55_3512	COG3217	Mosc domain protein beta barrel domain protein
FORC55_3512	COG0633	Ferredoxin
FORC55_3512	COG3217	Mosc domain protein beta barrel domain protein
FORC55_3512	COG0633	Ferredoxin
FORC55_3513	COG0418	dihydroorotase activity
FORC55_3516	COG3152	Membrane
FORC55_3518	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FORC55_3519	COG2354	Protein conserved in bacteria
FORC55_3520	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
FORC55_3521	COG1278	Cold shock
FORC55_3526	COG3706	GGDEF domain
FORC55_3527	COG3706	GGDEF domain
FORC55_3528	COG1349	DNA-binding transcription factor activity
FORC55_3531	COG3833	ABC-type maltose transport systems, permease component
FORC55_3532	COG1175	transmembrane transport
FORC55_3534	COG3842	ATPase activity
FORC55_3535	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FORC55_3538	COG0393	Putative heavy-metal-binding
FORC55_3539	COG2197	response regulator
FORC55_3540	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FORC55_3541	COG0784	Response regulator, receiver
FORC55_3541	COG0835	chemotaxis
FORC55_3542	COG1846	Transcriptional regulator
FORC55_3543	COG3706	GGDEF domain
FORC55_3551	COG0583	DNA-binding transcription factor activity
FORC55_3552	COG5001	Diguanylate cyclase
FORC55_3554	COG1741	Belongs to the pirin family
FORC55_3555	COG3123	guanosine phosphorylase activity
FORC55_3557	COG2211	Major facilitator Superfamily
FORC55_3559	COG1067	ATP-dependent peptidase activity
FORC55_3561	COG4172	Belongs to the ABC transporter superfamily
FORC55_3565	COG0583	DNA-binding transcription factor activity
FORC55_3566	COG1620	l-lactate permease
FORC55_3567	COG1304	FMN binding
FORC55_3569	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
FORC55_3572	COG0840	transmembrane signaling receptor activity
FORC55_3574	COG0513	Belongs to the DEAD box helicase family
FORC55_3576	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FORC55_3578	COG1132	(ABC) transporter
FORC55_3580	COG1902	pentaerythritol trinitrate reductase activity
FORC55_3582	COG1280	lysine exporter protein (LysE YggA)
FORC55_3583	COG2207	Transcriptional regulator
FORC55_3587	COG1846	Transcriptional regulator
FORC55_3588	COG1764	response to oxidative stress
FORC55_3589	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
FORC55_3590	COG0697	spore germination
FORC55_3592	COG0700	Nucleoside recognition
FORC55_3593	COG3366	ferrous iron transmembrane transporter activity
FORC55_3594	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FORC55_3596	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FORC55_3597	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
FORC55_3598	COG2259	Doxx family
FORC55_3603	COG0363	glucosamine-6-phosphate deaminase activity
FORC55_3606	COG4580	involved in the transport of maltose and maltodextrins
FORC55_3609	COG0840	transmembrane signaling receptor activity
FORC55_3611	COG0840	transmembrane signaling receptor activity
FORC55_3613	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
FORC55_3614	COG1126	abc transporter atp-binding protein
FORC55_3616	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FORC55_3617	COG4597	amino acid ABC transporter
FORC55_3618	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FORC55_3620	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
FORC55_3620	COG2213	PTS system mannitol-specific
FORC55_3621	COG0246	Mannitol dehydrogenase
FORC55_3622	COG3722	fumarate hydratase activity
FORC55_3623	COG0673	inositol 2-dehydrogenase activity
FORC55_3624	COG3385	transposase activity
FORC55_3629	COG0697	spore germination
FORC55_3632	COG1335	isochorismatase
FORC55_3634	COG2910	NAD(P)H-binding
FORC55_3636	COG0840	transmembrane signaling receptor activity
FORC55_3637	COG4221	oxidoreductase activity
FORC55_3639	COG1901	pseudouridine methyltransferase
FORC55_3640	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
FORC55_3641	COG0531	amino acid
FORC55_3642	COG1982	Orn Lys Arg decarboxylase major
FORC55_3648	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FORC55_3653	COG1262	PFAM Formylglycine-generating sulfatase enzyme
FORC55_3655	COG0259	pyridoxamine-phosphate oxidase activity
FORC55_3661	COG0745	RESPONSE REGULATOR receiver
FORC55_3665	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
FORC55_3666	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FORC55_3667	COG0840	transmembrane signaling receptor activity
FORC55_3668	COG0835	chemotaxis
FORC55_3669	COG0835	chemotaxis
FORC55_3670	COG0643	Histidine kinase
FORC55_3670	COG2198	Histidine kinase
FORC55_3674	COG0601	transmembrane transport
FORC55_3675	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FORC55_3677	COG2194	sulfuric ester hydrolase activity
FORC55_3678	COG0642	Histidine kinase
FORC55_3679	COG0745	RESPONSE REGULATOR receiver
FORC55_3685	COG1444	tRNA N-acetyltransferase activity
FORC55_3686	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine