FORC55_0001 SM00382 ATPases associated with a variety of cellular activities FORC55_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain FORC55_0002 SM00480 DNA polymerase III beta subunit FORC55_0004 SM00387 Histidine kinase-like ATPases FORC55_0004 SM00433 TopoisomeraseII FORC55_0014 SM00829 Enoylreductase FORC55_0020 SM00382 ATPases associated with a variety of cellular activities FORC55_0021 SM00563 Phosphate acyltransferases FORC55_0034 SM00257 Lysin motif FORC55_0039 SM01001 AIR carboxylase FORC55_0051 SM00876 Biotin and Thiamin Synthesis associated domain FORC55_0056 SM00344 helix_turn_helix ASNC type FORC55_0057 SM00052 Putative diguanylate phosphodiesterase FORC55_0057 SM00091 PAS domain FORC55_0057 SM00267 diguanylate cyclase FORC55_0065 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) FORC55_0065 SM00091 PAS domain FORC55_0065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_0079 SM00563 Phosphate acyltransferases FORC55_0083 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) FORC55_0083 SM00091 PAS domain FORC55_0083 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_0085 SM00450 Rhodanese Homology Domain FORC55_0087 SM01004 Delta-aminolevulinic acid dehydratase FORC55_0089 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs FORC55_0089 SM00474 3'-5' exonuclease FORC55_0089 SM00475 5'-3' exonuclease FORC55_0089 SM00482 DNA polymerase A domain FORC55_0095 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_0101 SM01219 FORC55_0101 FORC55_0107 SM00052 Putative diguanylate phosphodiesterase FORC55_0107 SM00267 diguanylate cyclase FORC55_0107 SM00897 FIST N domain FORC55_0107 SM01204 FORC55_0107 FORC55_0108 SM01144 FORC55_0108 FORC55_0121 SM00382 ATPases associated with a variety of cellular activities FORC55_0121 SM00962 SRP54-type protein, GTPase domain FORC55_0121 SM00963 SRP54-type protein, helical bundle domain FORC55_0122 SM00382 ATPases associated with a variety of cellular activities FORC55_0130 SM01321 FORC55_0130 FORC55_0133 SM00360 RNA recognition motif FORC55_0136 SM00052 Putative diguanylate phosphodiesterase FORC55_0136 SM00267 diguanylate cyclase FORC55_0137 SM00382 ATPases associated with a variety of cellular activities FORC55_0137 SM00448 cheY-homologous receiver domain FORC55_0138 SM00091 PAS domain FORC55_0138 SM00387 Histidine kinase-like ATPases FORC55_0138 SM00388 His Kinase A (phosphoacceptor) domain FORC55_0140 SM01230 FORC55_0140 FORC55_0150 SM00363 S4 RNA-binding domain FORC55_0153 SM00382 ATPases associated with a variety of cellular activities FORC55_0169 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_0169 SM00732 Likely ribonuclease with RNase H fold. FORC55_0171 SM00421 helix_turn_helix, Lux Regulon FORC55_0173 SM00382 ATPases associated with a variety of cellular activities FORC55_0176 SM00495 Chitin-binding domain type 3 FORC55_0177 SM00448 cheY-homologous receiver domain FORC55_0177 SM00862 Transcriptional regulatory protein, C terminal FORC55_0178 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_0178 SM00387 Histidine kinase-like ATPases FORC55_0178 SM00388 His Kinase A (phosphoacceptor) domain FORC55_0180 SM00487 DEAD-like helicases superfamily FORC55_0180 SM00490 helicase superfamily c-terminal domain FORC55_0181 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_0181 SM00954 Region found in RelA / SpoT proteins FORC55_0182 SM01409 FORC55_0182 FORC55_0183 SM00072 Guanylate kinase homologues. FORC55_0187 SM01091 Transporter associated domain FORC55_0188 SM00421 helix_turn_helix, Lux Regulon FORC55_0188 SM00448 cheY-homologous receiver domain FORC55_0194 SM00267 diguanylate cyclase FORC55_0198 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_0198 SM00387 Histidine kinase-like ATPases FORC55_0198 SM00388 His Kinase A (phosphoacceptor) domain FORC55_0199 SM00448 cheY-homologous receiver domain FORC55_0199 SM00862 Transcriptional regulatory protein, C terminal FORC55_0209 SM00919 Malic enzyme, NAD binding domain FORC55_0209 SM01274 FORC55_0209 FORC55_0211 SM00487 DEAD-like helicases superfamily FORC55_0211 SM00490 helicase superfamily c-terminal domain FORC55_0212 SM00354 helix_turn _helix lactose operon repressor FORC55_0215 SM00382 ATPases associated with a variety of cellular activities FORC55_0215 SM01086 C-terminal, D2-small domain, of ClpB protein FORC55_0224 SM00883 Chaperonin 10 Kd subunit FORC55_0228 SM00841 Elongation factor P, C-terminal FORC55_0228 SM01185 FORC55_0228 FORC55_0234 SM00450 Rhodanese Homology Domain FORC55_0237 SM00971 Serine acetyltransferase, N-terminal FORC55_0241 SM00859 Semialdehyde dehydrogenase, NAD binding domain FORC55_0254 SM00965 Secretin and TonB N terminus short domain FORC55_0264 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_0269 SM01150 FORC55_0269 FORC55_0270 SM00100 Cyclic nucleotide-monophosphate binding domain FORC55_0270 SM00419 helix_turn_helix, cAMP Regulatory protein FORC55_0275 SM00382 ATPases associated with a variety of cellular activities FORC55_0282 SM00788 Adenylosuccinate synthetase FORC55_0283 SM00671 Sel1-like repeats. FORC55_0285 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_0285 SM00357 Cold shock protein domain FORC55_0285 SM00955 FORC55_0285 FORC55_0286 SM00967 RNA 2'-O ribose methyltransferase substrate binding FORC55_0287 SM01403 FORC55_0287 FORC55_0291 SM01382 FORC55_0291 FORC55_0291 SM01383 FORC55_0291 FORC55_0294 SM00322 K homology RNA-binding domain FORC55_0298 SM01374 FORC55_0298 FORC55_0299 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. FORC55_0312 SM00363 S4 RNA-binding domain FORC55_0312 SM01390 FORC55_0312 FORC55_0313 SM00662 RNA polymerases D FORC55_0320 SM00487 DEAD-like helicases superfamily FORC55_0320 SM00490 helicase superfamily c-terminal domain FORC55_0330 SM00382 ATPases associated with a variety of cellular activities FORC55_0344 SM00382 ATPases associated with a variety of cellular activities FORC55_0347 SM00924 MgtE intracellular N domain FORC55_0353 SM00382 ATPases associated with a variety of cellular activities FORC55_0357 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_0359 SM00382 ATPases associated with a variety of cellular activities FORC55_0366 SM00563 Phosphate acyltransferases FORC55_0371 SM00670 Large family of predicted nucleotide-binding domains FORC55_0373 SM00487 DEAD-like helicases superfamily FORC55_0373 SM00490 helicase superfamily c-terminal domain FORC55_0382 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_0387 SM01329 FORC55_0387 FORC55_0388 SM00917 LeuA allosteric (dimerisation) domain FORC55_0390 SM00014 Acid phosphatase homologues FORC55_0414 SM00358 Double-stranded RNA binding motif FORC55_0414 SM00535 Ribonuclease III family FORC55_0422 SM00267 diguanylate cyclase FORC55_0423 SM00073 Histidine Phosphotransfer domain FORC55_0423 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_0423 SM00387 Histidine kinase-like ATPases FORC55_0423 SM00388 His Kinase A (phosphoacceptor) domain FORC55_0423 SM00448 cheY-homologous receiver domain FORC55_0425 SM00954 Region found in RelA / SpoT proteins FORC55_0428 SM01192 FORC55_0428 FORC55_0428 SM01193 FORC55_0428 FORC55_0430 SM00382 ATPases associated with a variety of cellular activities FORC55_0432 SM00287 Bacterial SH3 domain homologues FORC55_0435 SM00880 FORC55_0435 FORC55_0435 SM01118 FORC55_0435 FORC55_0436 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_0436 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_0444 SM00387 Histidine kinase-like ATPases FORC55_0444 SM00433 TopoisomeraseII FORC55_0445 SM00434 DNA Topoisomerase IV FORC55_0454 SM00644 FORC55_0454 FORC55_0460 SM00345 helix_turn_helix gluconate operon transcriptional repressor FORC55_0460 SM00895 FORC55_0460 FORC55_0475 SM00842 Cell division protein FtsA FORC55_0476 SM00864 Tubulin/FtsZ family, GTPase domain FORC55_0476 SM00865 Tubulin/FtsZ family, C-terminal domain FORC55_0479 SM00957 SecA DEAD-like domain FORC55_0479 SM00958 SecA preprotein cross-linking domain FORC55_0483 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain FORC55_0484 SM00851 MGS-like domain FORC55_0484 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FORC55_0501 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_0502 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) FORC55_0502 SM00091 PAS domain FORC55_0502 SM00267 diguanylate cyclase FORC55_0503 SM00073 Histidine Phosphotransfer domain FORC55_0503 SM00091 PAS domain FORC55_0503 SM00387 Histidine kinase-like ATPases FORC55_0503 SM00388 His Kinase A (phosphoacceptor) domain FORC55_0503 SM00448 cheY-homologous receiver domain FORC55_0504 SM00448 cheY-homologous receiver domain FORC55_0504 SM00862 Transcriptional regulatory protein, C terminal FORC55_0512 SM00518 AP endonuclease family 2 FORC55_0513 SM00986 Uracil DNA glycosylase superfamily FORC55_0513 SM00987 UreE urease accessory protein, C-terminal domain FORC55_0521 SM01133 FORC55_0521 FORC55_0522 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain FORC55_0528 SM00382 ATPases associated with a variety of cellular activities FORC55_0529 SM00838 Elongation factor G C-terminus FORC55_0529 SM00889 Elongation factor G, domain IV FORC55_0533 SM01038 Beta galactosidase small chain FORC55_0534 SM00354 helix_turn _helix lactose operon repressor FORC55_0552 SM00925 MltA specific insert domain FORC55_0559 SM00464 Found in ATP-dependent protease La (LON) FORC55_0569 SM00900 FORC55_0569 FORC55_0577 SM00267 diguanylate cyclase FORC55_0588 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase FORC55_0599 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_0608 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. FORC55_0610 SM00935 Outer membrane protein (OmpH-like) FORC55_0616 SM00481 DNA polymerase alpha chain like domain FORC55_0618 SM00977 TilS substrate C-terminal domain FORC55_0621 SM00938 Nitrogen regulatory protein P-II FORC55_0623 SM00257 Lysin motif FORC55_0624 SM00849 Metallo-beta-lactamase superfamily FORC55_0627 SM00479 FORC55_0627 FORC55_0635 SM00267 diguanylate cyclase FORC55_0636 SM00363 S4 RNA-binding domain FORC55_0637 SM00463 Small MutS-related domain FORC55_0639 SM01081 Putative carbohydrate binding domain FORC55_0647 SM00823 Phosphopantetheine attachment site FORC55_0653 SM00858 FORC55_0653 FORC55_0654 SM00260 Two component signalling adaptor domain FORC55_0654 SM00448 cheY-homologous receiver domain FORC55_0655 SM00138 Methyltransferase, chemotaxis proteins FORC55_0664 SM00047 Lysozyme subfamily 2 FORC55_0671 SM01400 FORC55_0671 FORC55_0675 SM00937 FORC55_0675 FORC55_0687 SM00028 Tetratricopeptide repeats FORC55_0692 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_0692 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_0695 SM01130 FORC55_0695 FORC55_0703 SM01321 FORC55_0703 FORC55_0714 SM00382 ATPases associated with a variety of cellular activities FORC55_0715 SM00091 PAS domain FORC55_0715 SM00387 Histidine kinase-like ATPases FORC55_0715 SM00388 His Kinase A (phosphoacceptor) domain FORC55_0716 SM00382 ATPases associated with a variety of cellular activities FORC55_0716 SM00448 cheY-homologous receiver domain FORC55_0721 SM00382 ATPases associated with a variety of cellular activities FORC55_0732 SM00463 Small MutS-related domain FORC55_0740 SM00825 Beta-ketoacyl synthase FORC55_0742 SM00859 Semialdehyde dehydrogenase, NAD binding domain FORC55_0760 SM00861 Transketolase, pyrimidine binding domain FORC55_0763 SM00881 CoA binding domain FORC55_0765 SM00382 ATPases associated with a variety of cellular activities FORC55_0767 SM00342 helix_turn_helix, arabinose operon control protein FORC55_0768 SM00899 FORC55_0768 FORC55_0772 SM00836 DALR anticodon binding domain FORC55_0772 SM01016 Arginyl tRNA synthetase N terminal dom FORC55_0775 SM00855 Phosphoglycerate mutase family FORC55_0777 SM00382 ATPases associated with a variety of cellular activities FORC55_0777 SM00962 SRP54-type protein, GTPase domain FORC55_0780 SM00448 cheY-homologous receiver domain FORC55_0782 SM00073 Histidine Phosphotransfer domain FORC55_0782 SM00260 Two component signalling adaptor domain FORC55_0782 SM00387 Histidine kinase-like ATPases FORC55_0782 SM01231 FORC55_0782 FORC55_0783 SM00448 cheY-homologous receiver domain FORC55_0785 SM00260 Two component signalling adaptor domain FORC55_0786 SM00260 Two component signalling adaptor domain FORC55_0788 SM00382 ATPases associated with a variety of cellular activities FORC55_0802 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain FORC55_0802 SM00437 Bacterial DNA topoisomerase I DNA-binding domain FORC55_0802 SM00493 FORC55_0802 FORC55_0807 SM00073 Histidine Phosphotransfer domain FORC55_0809 SM00859 Semialdehyde dehydrogenase, NAD binding domain FORC55_0814 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_0815 SM00363 S4 RNA-binding domain FORC55_0821 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. FORC55_0822 SM00822 FORC55_0822 FORC55_0824 SM00825 Beta-ketoacyl synthase FORC55_0836 SM00260 Two component signalling adaptor domain FORC55_0836 SM00448 cheY-homologous receiver domain FORC55_0842 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FORC55_0846 SM00870 FORC55_0846 FORC55_0851 SM00487 DEAD-like helicases superfamily FORC55_0851 SM00491 FORC55_0851 FORC55_0857 SM00474 3'-5' exonuclease FORC55_0859 SM01144 FORC55_0859 FORC55_0860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_0861 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_0867 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain FORC55_0870 SM00563 Phosphate acyltransferases FORC55_0872 SM00978 FORC55_0872 FORC55_0893 SM00563 Phosphate acyltransferases FORC55_0896 SM00052 Putative diguanylate phosphodiesterase FORC55_0896 SM00267 diguanylate cyclase FORC55_0902 SM00382 ATPases associated with a variety of cellular activities FORC55_0902 SM00448 cheY-homologous receiver domain FORC55_0903 SM00387 Histidine kinase-like ATPases FORC55_0903 SM00388 His Kinase A (phosphoacceptor) domain FORC55_0907 SM00382 ATPases associated with a variety of cellular activities FORC55_0907 SM00994 ClpX C4-type zinc finger FORC55_0907 SM01086 C-terminal, D2-small domain, of ClpB protein FORC55_0908 SM00382 ATPases associated with a variety of cellular activities FORC55_0908 SM00464 Found in ATP-dependent protease La (LON) FORC55_0909 SM00411 bacterial (prokaryotic) histone like domain FORC55_0911 SM00278 Helix-hairpin-helix DNA-binding motif class 1 FORC55_0913 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_0914 SM00411 bacterial (prokaryotic) histone like domain FORC55_0916 SM00028 Tetratricopeptide repeats FORC55_0917 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family FORC55_0921 SM00382 ATPases associated with a variety of cellular activities FORC55_0922 SM00382 ATPases associated with a variety of cellular activities FORC55_0930 SM01002 Alanine dehydrogenase/PNT, C-terminal domain FORC55_0930 SM01003 Alanine dehydrogenase/PNT, N-terminal domain FORC55_0931 SM00344 helix_turn_helix ASNC type FORC55_0933 SM00843 FORC55_0933 FORC55_0936 SM00345 helix_turn_helix gluconate operon transcriptional repressor FORC55_0938 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_0938 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_0949 SM00487 DEAD-like helicases superfamily FORC55_0949 SM00490 helicase superfamily c-terminal domain FORC55_0949 SM00982 FORC55_0949 FORC55_0949 SM01058 CarD-like/TRCF domain FORC55_0952 SM00382 ATPases associated with a variety of cellular activities FORC55_0955 SM00849 Metallo-beta-lactamase superfamily FORC55_0956 SM00382 ATPases associated with a variety of cellular activities FORC55_0962 SM00763 PrkA AAA domain FORC55_0968 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_0968 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_0973 SM00382 ATPases associated with a variety of cellular activities FORC55_0974 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_0974 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. FORC55_0978 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_0978 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_0982 SM00491 FORC55_0982 FORC55_0989 SM00840 FORC55_0989 FORC55_0991 SM00278 Helix-hairpin-helix DNA-binding motif class 1 FORC55_0992 SM00382 ATPases associated with a variety of cellular activities FORC55_1005 SM00387 Histidine kinase-like ATPases FORC55_1005 SM00388 His Kinase A (phosphoacceptor) domain FORC55_1005 SM00448 cheY-homologous receiver domain FORC55_1008 SM00382 ATPases associated with a variety of cellular activities FORC55_1028 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_1034 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain FORC55_1034 SM00437 Bacterial DNA topoisomerase I DNA-binding domain FORC55_1034 SM00493 FORC55_1034 FORC55_1041 SM00354 helix_turn _helix lactose operon repressor FORC55_1043 SM00448 cheY-homologous receiver domain FORC55_1043 SM00862 Transcriptional regulatory protein, C terminal FORC55_1050 SM00342 helix_turn_helix, arabinose operon control protein FORC55_1052 SM00344 helix_turn_helix ASNC type FORC55_1054 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_1075 SM00843 FORC55_1075 FORC55_1123 SM01252 FORC55_1123 FORC55_1129 SM00052 Putative diguanylate phosphodiesterase FORC55_1129 SM00091 PAS domain FORC55_1150 SM01131 FORC55_1150 FORC55_1153 SM00382 ATPases associated with a variety of cellular activities FORC55_1154 SM00382 ATPases associated with a variety of cellular activities FORC55_1158 SM00382 ATPases associated with a variety of cellular activities FORC55_1169 SM00155 Phospholipase D. Active site motifs. FORC55_1173 SM00382 ATPases associated with a variety of cellular activities FORC55_1180 SM00382 ATPases associated with a variety of cellular activities FORC55_1184 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_1185 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_1185 SM00918 Ligated ion channel L-glutamate- and glycine-binding site FORC55_1187 SM00020 Trypsin-like serine protease FORC55_1192 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1192 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1195 SM00052 Putative diguanylate phosphodiesterase FORC55_1197 SM00387 Histidine kinase-like ATPases FORC55_1198 SM00448 cheY-homologous receiver domain FORC55_1198 SM00862 Transcriptional regulatory protein, C terminal FORC55_1200 SM00487 DEAD-like helicases superfamily FORC55_1200 SM00490 helicase superfamily c-terminal domain FORC55_1201 SM00363 S4 RNA-binding domain FORC55_1206 SM00382 ATPases associated with a variety of cellular activities FORC55_1215 SM00327 von Willebrand factor (vWF) type A domain FORC55_1223 SM00028 Tetratricopeptide repeats FORC55_1223 SM00386 HAT (Half-A-TPR) repeats FORC55_1231 SM00387 Histidine kinase-like ATPases FORC55_1232 SM00448 cheY-homologous receiver domain FORC55_1234 SM00260 Two component signalling adaptor domain FORC55_1234 SM00448 cheY-homologous receiver domain FORC55_1237 SM00267 diguanylate cyclase FORC55_1243 SM00267 diguanylate cyclase FORC55_1244 SM00052 Putative diguanylate phosphodiesterase FORC55_1245 SM00822 FORC55_1245 FORC55_1255 SM01022 FORC55_1255 FORC55_1262 SM00382 ATPases associated with a variety of cellular activities FORC55_1270 SM00354 helix_turn _helix lactose operon repressor FORC55_1274 SM00420 helix_turn_helix, Deoxyribose operon repressor FORC55_1274 SM01134 FORC55_1274 FORC55_1275 SM00382 ATPases associated with a variety of cellular activities FORC55_1292 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1294 SM01144 FORC55_1294 FORC55_1297 SM00852 Probable molybdopterin binding domain FORC55_1299 SM00382 ATPases associated with a variety of cellular activities FORC55_1302 SM00382 ATPases associated with a variety of cellular activities FORC55_1302 SM00448 cheY-homologous receiver domain FORC55_1303 SM00387 Histidine kinase-like ATPases FORC55_1303 SM00388 His Kinase A (phosphoacceptor) domain FORC55_1304 SM00382 ATPases associated with a variety of cellular activities FORC55_1311 SM00926 Molybdopterin oxidoreductase Fe4S4 domain FORC55_1320 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_1324 SM00382 ATPases associated with a variety of cellular activities FORC55_1326 SM00945 ProQ/FINO family FORC55_1327 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. FORC55_1327 SM00245 tail specific protease FORC55_1333 SM00981 FORC55_1333 FORC55_1335 SM00382 ATPases associated with a variety of cellular activities FORC55_1342 SM00530 Helix-turn-helix XRE-family like proteins FORC55_1347 SM00530 Helix-turn-helix XRE-family like proteins FORC55_1360 SM00382 ATPases associated with a variety of cellular activities FORC55_1361 SM00387 Histidine kinase-like ATPases FORC55_1361 SM00388 His Kinase A (phosphoacceptor) domain FORC55_1361 SM00448 cheY-homologous receiver domain FORC55_1362 SM00897 FIST N domain FORC55_1362 SM01204 FORC55_1362 FORC55_1372 SM00100 Cyclic nucleotide-monophosphate binding domain FORC55_1372 SM00419 helix_turn_helix, cAMP Regulatory protein FORC55_1378 SM00382 ATPases associated with a variety of cellular activities FORC55_1397 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1397 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1402 SM00487 DEAD-like helicases superfamily FORC55_1402 SM00490 helicase superfamily c-terminal domain FORC55_1403 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) FORC55_1403 SM00091 PAS domain FORC55_1403 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1404 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1404 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1414 SM00382 ATPases associated with a variety of cellular activities FORC55_1414 SM00487 DEAD-like helicases superfamily FORC55_1414 SM00490 helicase superfamily c-terminal domain FORC55_1414 SM00847 Helicase associated domain (HA2) Add an annotation FORC55_1417 SM00479 FORC55_1417 FORC55_1418 SM00267 diguanylate cyclase FORC55_1418 SM01079 FORC55_1418 FORC55_1422 SM00267 diguanylate cyclase FORC55_1424 SM00267 diguanylate cyclase FORC55_1427 SM00028 Tetratricopeptide repeats FORC55_1427 SM00267 diguanylate cyclase FORC55_1433 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_1436 SM00382 ATPases associated with a variety of cellular activities FORC55_1440 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase FORC55_1441 SM00267 diguanylate cyclase FORC55_1444 SM00073 Histidine Phosphotransfer domain FORC55_1444 SM00387 Histidine kinase-like ATPases FORC55_1444 SM00388 His Kinase A (phosphoacceptor) domain FORC55_1444 SM00448 cheY-homologous receiver domain FORC55_1445 SM00091 PAS domain FORC55_1448 SM00448 cheY-homologous receiver domain FORC55_1448 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_1461 SM00345 helix_turn_helix gluconate operon transcriptional repressor FORC55_1461 SM00895 FORC55_1461 FORC55_1469 SM00382 ATPases associated with a variety of cellular activities FORC55_1474 SM00448 cheY-homologous receiver domain FORC55_1475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1475 SM00387 Histidine kinase-like ATPases FORC55_1475 SM00388 His Kinase A (phosphoacceptor) domain FORC55_1478 SM00448 cheY-homologous receiver domain FORC55_1479 SM00387 Histidine kinase-like ATPases FORC55_1481 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1481 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1482 SM01005 Alanine racemase, C-terminal domain FORC55_1486 SM00091 PAS domain FORC55_1486 SM00382 ATPases associated with a variety of cellular activities FORC55_1496 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1496 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1500 SM00100 Cyclic nucleotide-monophosphate binding domain FORC55_1500 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_1501 SM00479 FORC55_1501 FORC55_1502 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1502 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1505 SM00354 helix_turn _helix lactose operon repressor FORC55_1512 SM00495 Chitin-binding domain type 3 FORC55_1514 SM00347 helix_turn_helix multiple antibiotic resistance protein FORC55_1515 SM00421 helix_turn_helix, Lux Regulon FORC55_1515 SM00448 cheY-homologous receiver domain FORC55_1516 SM00387 Histidine kinase-like ATPases FORC55_1516 SM01049 FORC55_1516 FORC55_1522 SM00849 Metallo-beta-lactamase superfamily FORC55_1533 SM00342 helix_turn_helix, arabinose operon control protein FORC55_1534 SM00450 Rhodanese Homology Domain FORC55_1535 SM00434 DNA Topoisomerase IV FORC55_1541 SM00852 Probable molybdopterin binding domain FORC55_1544 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_1544 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1544 SM01049 FORC55_1544 FORC55_1547 SM00382 ATPases associated with a variety of cellular activities FORC55_1550 SM00855 Phosphoglycerate mutase family FORC55_1564 SM00411 bacterial (prokaryotic) histone like domain FORC55_1565 SM00873 B3/4 domain FORC55_1565 SM00874 tRNA synthetase B5 domain FORC55_1565 SM00896 Ferredoxin-fold anticodon binding domain FORC55_1568 SM00267 diguanylate cyclase FORC55_1570 SM00278 Helix-hairpin-helix DNA-binding motif class 1 FORC55_1570 SM00465 GIY-YIG type nucleases (URI domain) FORC55_1571 SM00421 helix_turn_helix, Lux Regulon FORC55_1571 SM00448 cheY-homologous receiver domain FORC55_1572 SM00486 DNA polymerase type-B family FORC55_1573 SM00052 Putative diguanylate phosphodiesterase FORC55_1575 SM00841 Elongation factor P, C-terminal FORC55_1575 SM01185 FORC55_1575 FORC55_1578 SM00345 helix_turn_helix gluconate operon transcriptional repressor FORC55_1578 SM00866 FORC55_1578 FORC55_1585 SM00020 Trypsin-like serine protease FORC55_1592 SM00271 DnaJ molecular chaperone homology domain FORC55_1592 SM00671 Sel1-like repeats. FORC55_1597 SM00919 Malic enzyme, NAD binding domain FORC55_1597 SM01274 FORC55_1597 FORC55_1600 SM00267 diguanylate cyclase FORC55_1604 SM00382 ATPases associated with a variety of cellular activities FORC55_1605 SM00382 ATPases associated with a variety of cellular activities FORC55_1606 SM00363 S4 RNA-binding domain FORC55_1608 SM00481 DNA polymerase alpha chain like domain FORC55_1626 SM00387 Histidine kinase-like ATPases FORC55_1627 SM00448 cheY-homologous receiver domain FORC55_1639 SM00382 ATPases associated with a variety of cellular activities FORC55_1639 SM01086 C-terminal, D2-small domain, of ClpB protein FORC55_1641 SM00357 Cold shock protein domain FORC55_1654 SM00528 Domain in histone-like proteins of HNS family FORC55_1672 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_1672 SM00876 Biotin and Thiamin Synthesis associated domain FORC55_1675 SM00382 ATPases associated with a variety of cellular activities FORC55_1679 SM00267 diguanylate cyclase FORC55_1680 SM00382 ATPases associated with a variety of cellular activities FORC55_1688 SM00382 ATPases associated with a variety of cellular activities FORC55_1689 SM00382 ATPases associated with a variety of cellular activities FORC55_1694 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_1694 SM00387 Histidine kinase-like ATPases FORC55_1695 SM00448 cheY-homologous receiver domain FORC55_1696 SM00052 Putative diguanylate phosphodiesterase FORC55_1696 SM00448 cheY-homologous receiver domain FORC55_1697 SM00387 Histidine kinase-like ATPases FORC55_1698 SM00387 Histidine kinase-like ATPases FORC55_1698 SM00388 His Kinase A (phosphoacceptor) domain FORC55_1700 SM00448 cheY-homologous receiver domain FORC55_1701 SM00448 cheY-homologous receiver domain FORC55_1705 SM00342 helix_turn_helix, arabinose operon control protein FORC55_1708 SM00495 Chitin-binding domain type 3 FORC55_1709 SM00636 FORC55_1709 FORC55_1712 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FORC55_1713 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor FORC55_1714 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_1714 SM00267 diguanylate cyclase FORC55_1719 SM00344 helix_turn_helix ASNC type FORC55_1726 SM00493 FORC55_1726 FORC55_1728 SM00382 ATPases associated with a variety of cellular activities FORC55_1731 SM00448 cheY-homologous receiver domain FORC55_1740 SM00226 Low molecular weight phosphatase family FORC55_1750 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_1751 SM00267 diguanylate cyclase FORC55_1755 SM00852 Probable molybdopterin binding domain FORC55_1756 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_1759 SM00382 ATPases associated with a variety of cellular activities FORC55_1759 SM00448 cheY-homologous receiver domain FORC55_1760 SM00487 DEAD-like helicases superfamily FORC55_1760 SM00490 helicase superfamily c-terminal domain FORC55_1765 SM00900 FORC55_1765 FORC55_1767 SM00478 endonuclease III FORC55_1767 SM00525 FORC55_1767 FORC55_1771 SM00479 FORC55_1771 FORC55_1787 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. FORC55_1787 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. FORC55_1791 SM00387 Histidine kinase-like ATPases FORC55_1792 SM00862 Transcriptional regulatory protein, C terminal FORC55_1799 SM00244 prohibitin homologues FORC55_1801 SM00422 helix_turn_helix, mercury resistance FORC55_1804 SM00278 Helix-hairpin-helix DNA-binding motif class 1 FORC55_1804 SM00292 breast cancer carboxy-terminal domain FORC55_1804 SM00532 Ligase N family FORC55_1805 SM00771 ZipA, C-terminal domain (FtsZ-binding) FORC55_1812 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_1815 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_1815 SM01091 Transporter associated domain FORC55_1826 SM00936 Penicillin-binding protein 5, C-terminal domain FORC55_1829 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_1843 SM00710 Parallel beta-helix repeats FORC55_1854 SM00984 UDP binding domain FORC55_1859 SM00642 Alpha-amylase domain FORC55_1861 SM00354 helix_turn _helix lactose operon repressor FORC55_1863 SM00382 ATPases associated with a variety of cellular activities FORC55_1863 SM00930 FORC55_1863 FORC55_1869 SM00028 Tetratricopeptide repeats FORC55_1870 SM00267 diguanylate cyclase FORC55_1872 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs FORC55_1872 SM00475 5'-3' exonuclease FORC55_1875 SM00981 FORC55_1875 FORC55_1880 SM00861 Transketolase, pyrimidine binding domain FORC55_1897 SM01211 FORC55_1897 FORC55_1899 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_1907 SM00271 DnaJ molecular chaperone homology domain FORC55_1936 SM00248 ankyrin repeats FORC55_1939 SM00487 DEAD-like helicases superfamily FORC55_1939 SM00490 helicase superfamily c-terminal domain FORC55_1951 SM00764 Citrate lyase ligase C-terminal domain FORC55_1956 SM00091 PAS domain FORC55_1956 SM00387 Histidine kinase-like ATPases FORC55_1957 SM00448 cheY-homologous receiver domain FORC55_1964 SM00382 ATPases associated with a variety of cellular activities FORC55_1974 SM00495 Chitin-binding domain type 3 FORC55_1976 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_1976 SM01240 FORC55_1976 FORC55_1980 SM00382 ATPases associated with a variety of cellular activities FORC55_1981 SM00564 beta-propeller repeat FORC55_1985 SM00530 Helix-turn-helix XRE-family like proteins FORC55_1987 SM00562 FORC55_1987 FORC55_1992 SM00271 DnaJ molecular chaperone homology domain FORC55_2002 SM01323 FORC55_2002 FORC55_2006 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_2014 SM00382 ATPases associated with a variety of cellular activities FORC55_2020 SM00091 PAS domain FORC55_2020 SM00387 Histidine kinase-like ATPases FORC55_2020 SM00388 His Kinase A (phosphoacceptor) domain FORC55_2021 SM00448 cheY-homologous receiver domain FORC55_2021 SM00862 Transcriptional regulatory protein, C terminal FORC55_2028 SM00382 ATPases associated with a variety of cellular activities FORC55_2028 SM01086 C-terminal, D2-small domain, of ClpB protein FORC55_2030 SM00363 S4 RNA-binding domain FORC55_2033 SM00830 Chorismate mutase type II FORC55_2035 SM00052 Putative diguanylate phosphodiesterase FORC55_2035 SM00267 diguanylate cyclase FORC55_2039 SM00382 ATPases associated with a variety of cellular activities FORC55_2041 SM00830 Chorismate mutase type II FORC55_2044 SM00448 cheY-homologous receiver domain FORC55_2044 SM00850 LytTr DNA-binding domain FORC55_2055 SM00904 Riboflavin kinase FORC55_2058 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor FORC55_2064 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. FORC55_2067 SM00927 DNA mismatch repair enzyme MutH FORC55_2070 SM00382 ATPases associated with a variety of cellular activities FORC55_2072 SM00937 FORC55_2072 FORC55_2075 SM00487 DEAD-like helicases superfamily FORC55_2075 SM00490 helicase superfamily c-terminal domain FORC55_2077 SM00530 Helix-turn-helix XRE-family like proteins FORC55_2086 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2090 SM00530 Helix-turn-helix XRE-family like proteins FORC55_2095 SM00267 diguanylate cyclase FORC55_2099 SM00052 Putative diguanylate phosphodiesterase FORC55_2099 SM00267 diguanylate cyclase FORC55_2103 SM00778 Zinc-binding domain of primase-helicase FORC55_2106 SM00327 von Willebrand factor (vWF) type A domain FORC55_2110 SM00382 ATPases associated with a variety of cellular activities FORC55_2122 SM00479 FORC55_2122 FORC55_2123 SM00100 Cyclic nucleotide-monophosphate binding domain FORC55_2123 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_2124 SM00052 Putative diguanylate phosphodiesterase FORC55_2124 SM00267 diguanylate cyclase FORC55_2125 SM00267 diguanylate cyclase FORC55_2130 SM00450 Rhodanese Homology Domain FORC55_2131 SM00849 Metallo-beta-lactamase superfamily FORC55_2158 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_2163 SM00530 Helix-turn-helix XRE-family like proteins FORC55_2164 SM00052 Putative diguanylate phosphodiesterase FORC55_2164 SM00267 diguanylate cyclase FORC55_2169 SM00052 Putative diguanylate phosphodiesterase FORC55_2169 SM00091 PAS domain FORC55_2169 SM00267 diguanylate cyclase FORC55_2173 SM00347 helix_turn_helix multiple antibiotic resistance protein FORC55_2174 SM00028 Tetratricopeptide repeats FORC55_2175 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_2175 SM00322 K homology RNA-binding domain FORC55_2176 SM01387 FORC55_2176 FORC55_2180 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_2180 SM00322 K homology RNA-binding domain FORC55_2186 SM00382 ATPases associated with a variety of cellular activities FORC55_2188 SM01103 FORC55_2188 FORC55_2192 SM00363 S4 RNA-binding domain FORC55_2200 SM00091 PAS domain FORC55_2200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2200 SM00387 Histidine kinase-like ATPases FORC55_2200 SM00388 His Kinase A (phosphoacceptor) domain FORC55_2200 SM00448 cheY-homologous receiver domain FORC55_2204 SM00382 ATPases associated with a variety of cellular activities FORC55_2205 SM00382 ATPases associated with a variety of cellular activities FORC55_2209 SM01068 Putative carbohydrate binding domain FORC55_2211 SM00382 ATPases associated with a variety of cellular activities FORC55_2215 SM00938 Nitrogen regulatory protein P-II FORC55_2220 SM00487 DEAD-like helicases superfamily FORC55_2220 SM00490 helicase superfamily c-terminal domain FORC55_2220 SM00847 Helicase associated domain (HA2) Add an annotation FORC55_2230 SM00382 ATPases associated with a variety of cellular activities FORC55_2232 SM00947 Carbonic anhydrase FORC55_2239 SM00749 bacterial OsmY and nodulation domain FORC55_2249 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. FORC55_2250 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. FORC55_2256 SM00382 ATPases associated with a variety of cellular activities FORC55_2256 SM00962 SRP54-type protein, GTPase domain FORC55_2256 SM00963 SRP54-type protein, helical bundle domain FORC55_2258 SM01091 Transporter associated domain FORC55_2263 SM00829 Enoylreductase FORC55_2269 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain FORC55_2271 SM00382 ATPases associated with a variety of cellular activities FORC55_2273 SM00382 ATPases associated with a variety of cellular activities FORC55_2278 SM00533 DNA-binding domain of DNA mismatch repair MUTS family FORC55_2278 SM00534 ATPase domain of DNA mismatch repair MUTS family FORC55_2280 SM00257 Lysin motif FORC55_2289 SM00905 Dihydroneopterin aldolase FORC55_2290 SM01207 FORC55_2290 FORC55_2297 SM00400 zinc finger FORC55_2297 SM00493 FORC55_2297 FORC55_2297 SM00766 DNA primase DnaG DnaB-binding FORC55_2299 SM00563 Phosphate acyltransferases FORC55_2302 SM00420 helix_turn_helix, Deoxyribose operon repressor FORC55_2302 SM01134 FORC55_2302 FORC55_2311 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FORC55_2314 SM00861 Transketolase, pyrimidine binding domain FORC55_2317 SM00731 SprT homologues. FORC55_2322 SM00732 Likely ribonuclease with RNase H fold. FORC55_2323 SM00363 S4 RNA-binding domain FORC55_2324 SM00421 helix_turn_helix, Lux Regulon FORC55_2326 SM00382 ATPases associated with a variety of cellular activities FORC55_2330 SM01152 FORC55_2330 FORC55_2333 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_2337 SM00478 endonuclease III FORC55_2337 SM00525 FORC55_2337 FORC55_2340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2340 SM01049 FORC55_2340 FORC55_2341 SM00271 DnaJ molecular chaperone homology domain FORC55_2345 SM00650 Ribosomal RNA adenine dimethylases FORC55_2370 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_2384 SM00382 ATPases associated with a variety of cellular activities FORC55_2385 SM00028 Tetratricopeptide repeats FORC55_2387 SM00965 Secretin and TonB N terminus short domain FORC55_2391 SM00052 Putative diguanylate phosphodiesterase FORC55_2391 SM00267 diguanylate cyclase FORC55_2393 SM00421 helix_turn_helix, Lux Regulon FORC55_2399 SM01018 B12 binding domain FORC55_2414 SM01005 Alanine racemase, C-terminal domain FORC55_2415 SM00382 ATPases associated with a variety of cellular activities FORC55_2423 SM00838 Elongation factor G C-terminus FORC55_2423 SM00889 Elongation factor G, domain IV FORC55_2431 SM00320 WD40 repeats FORC55_2434 SM00244 prohibitin homologues FORC55_2435 SM00244 prohibitin homologues FORC55_2439 SM00853 MutL C terminal dimerisation domain FORC55_2439 SM01340 FORC55_2439 FORC55_2440 SM00257 Lysin motif FORC55_2440 SM00646 FORC55_2440 FORC55_2443 SM00479 FORC55_2443 FORC55_2455 SM00663 RNA polymerase I subunit A N-terminus FORC55_2460 SM00649 Ribosomal protein L11/L12 FORC55_2461 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. FORC55_2461 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. FORC55_2468 SM00155 Phospholipase D. Active site motifs. FORC55_2473 SM00357 Cold shock protein domain FORC55_2473 SM00382 ATPases associated with a variety of cellular activities FORC55_2473 SM00959 Rho termination factor, N-terminal domain FORC55_2475 SM00487 DEAD-like helicases superfamily FORC55_2475 SM00490 helicase superfamily c-terminal domain FORC55_2477 SM00387 Histidine kinase-like ATPases FORC55_2477 SM00388 His Kinase A (phosphoacceptor) domain FORC55_2477 SM00448 cheY-homologous receiver domain FORC55_2479 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_2480 SM00479 FORC55_2480 FORC55_2484 SM00878 Biotin carboxylase C-terminal domain FORC55_2488 SM00354 helix_turn _helix lactose operon repressor FORC55_2498 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2498 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2498 SM01049 FORC55_2498 FORC55_2502 SM00862 Transcriptional regulatory protein, C terminal FORC55_2503 SM00422 helix_turn_helix, mercury resistance FORC55_2505 SM00798 AICARFT/IMPCHase bienzyme FORC55_2505 SM00851 MGS-like domain FORC55_2506 SM01209 FORC55_2506 FORC55_2506 SM01210 FORC55_2506 FORC55_2508 SM00411 bacterial (prokaryotic) histone like domain FORC55_2513 SM00986 Uracil DNA glycosylase superfamily FORC55_2513 SM00987 UreE urease accessory protein, C-terminal domain FORC55_2518 SM00849 Metallo-beta-lactamase superfamily FORC55_2518 SM01027 Beta-Casp domain FORC55_2533 SM00858 FORC55_2533 FORC55_2561 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain FORC55_2561 SM01232 FORC55_2561 FORC55_2566 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2566 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2566 SM01049 FORC55_2566 FORC55_2577 SM00530 Helix-turn-helix XRE-family like proteins FORC55_2585 SM00506 Appr-1"-p processing enzyme FORC55_2607 SM00382 ATPases associated with a variety of cellular activities FORC55_2609 SM00382 ATPases associated with a variety of cellular activities FORC55_2612 SM00341 Helicase and RNase D C-terminal FORC55_2612 SM00487 DEAD-like helicases superfamily FORC55_2612 SM00490 helicase superfamily c-terminal domain FORC55_2612 SM00956 FORC55_2612 FORC55_2615 SM00342 helix_turn_helix, arabinose operon control protein FORC55_2626 SM00382 ATPases associated with a variety of cellular activities FORC55_2646 SM00382 ATPases associated with a variety of cellular activities FORC55_2654 SM00470 ParB-like nuclease domain FORC55_2657 SM01228 FORC55_2657 FORC55_2673 SM00487 DEAD-like helicases superfamily FORC55_2687 SM00382 ATPases associated with a variety of cellular activities FORC55_2689 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_2690 SM00470 ParB-like nuclease domain FORC55_2698 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2698 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2698 SM01049 FORC55_2698 FORC55_2700 SM00421 helix_turn_helix, Lux Regulon FORC55_2703 SM00642 Alpha-amylase domain FORC55_2714 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins FORC55_2714 SM00495 Chitin-binding domain type 3 FORC55_2714 SM00636 FORC55_2714 FORC55_2718 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2718 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2723 SM00014 Acid phosphatase homologues FORC55_2732 SM00245 tail specific protease FORC55_2733 SM00267 diguanylate cyclase FORC55_2734 SM00028 Tetratricopeptide repeats FORC55_2738 SM00422 helix_turn_helix, mercury resistance FORC55_2740 SM00257 Lysin motif FORC55_2742 SM00487 DEAD-like helicases superfamily FORC55_2742 SM00490 helicase superfamily c-terminal domain FORC55_2751 SM00382 ATPases associated with a variety of cellular activities FORC55_2752 SM00267 diguanylate cyclase FORC55_2758 SM00052 Putative diguanylate phosphodiesterase FORC55_2759 SM00267 diguanylate cyclase FORC55_2762 SM00422 helix_turn_helix, mercury resistance FORC55_2775 SM00450 Rhodanese Homology Domain FORC55_2776 SM00052 Putative diguanylate phosphodiesterase FORC55_2792 SM00382 ATPases associated with a variety of cellular activities FORC55_2792 SM01086 C-terminal, D2-small domain, of ClpB protein FORC55_2793 SM00382 ATPases associated with a variety of cellular activities FORC55_2807 SM00382 ATPases associated with a variety of cellular activities FORC55_2811 SM00354 helix_turn _helix lactose operon repressor FORC55_2815 SM00100 Cyclic nucleotide-monophosphate binding domain FORC55_2819 SM00495 Chitin-binding domain type 3 FORC55_2820 SM00091 PAS domain FORC55_2820 SM00387 Histidine kinase-like ATPases FORC55_2820 SM00388 His Kinase A (phosphoacceptor) domain FORC55_2821 SM00382 ATPases associated with a variety of cellular activities FORC55_2821 SM00448 cheY-homologous receiver domain FORC55_2830 SM00354 helix_turn _helix lactose operon repressor FORC55_2845 SM00267 diguanylate cyclase FORC55_2846 SM00357 Cold shock protein domain FORC55_2849 SM00028 Tetratricopeptide repeats FORC55_2850 SM00327 von Willebrand factor (vWF) type A domain FORC55_2854 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2854 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2861 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. FORC55_2861 SM00382 ATPases associated with a variety of cellular activities FORC55_2863 SM00357 Cold shock protein domain FORC55_2868 SM00448 cheY-homologous receiver domain FORC55_2876 SM01240 FORC55_2876 FORC55_2882 SM00487 DEAD-like helicases superfamily FORC55_2882 SM00490 helicase superfamily c-terminal domain FORC55_2886 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_2887 SM00387 Histidine kinase-like ATPases FORC55_2893 SM00267 diguanylate cyclase FORC55_2895 SM00458 Ricin-type beta-trefoil FORC55_2896 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2896 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2899 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins FORC55_2905 SM00382 ATPases associated with a variety of cellular activities FORC55_2906 SM00342 helix_turn_helix, arabinose operon control protein FORC55_2911 SM00857 Resolvase, N terminal domain FORC55_2933 SM00382 ATPases associated with a variety of cellular activities FORC55_2935 SM00487 DEAD-like helicases superfamily FORC55_2941 SM00528 Domain in histone-like proteins of HNS family FORC55_2954 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2954 SM00387 Histidine kinase-like ATPases FORC55_2954 SM00388 His Kinase A (phosphoacceptor) domain FORC55_2955 SM00448 cheY-homologous receiver domain FORC55_2955 SM00862 Transcriptional regulatory protein, C terminal FORC55_2958 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family FORC55_2960 SM01007 Class II Aldolase and Adducin N-terminal domain FORC55_2963 SM00420 helix_turn_helix, Deoxyribose operon repressor FORC55_2963 SM01134 FORC55_2963 FORC55_2968 SM00448 cheY-homologous receiver domain FORC55_2968 SM00862 Transcriptional regulatory protein, C terminal FORC55_2969 SM00387 Histidine kinase-like ATPases FORC55_2969 SM00388 His Kinase A (phosphoacceptor) domain FORC55_2978 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_2978 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_2980 SM00936 Penicillin-binding protein 5, C-terminal domain FORC55_2983 SM01057 Eukaryotic-type carbonic anhydrase FORC55_2987 SM00530 Helix-turn-helix XRE-family like proteins FORC55_2989 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain FORC55_2994 SM00326 Src homology 3 domains FORC55_3000 SM01022 FORC55_3000 FORC55_3077 SM00990 FORC55_3077 FORC55_3081 SM00020 Trypsin-like serine protease FORC55_3107 SM00382 ATPases associated with a variety of cellular activities FORC55_3116 SM01022 FORC55_3116 FORC55_3134 SM00326 Src homology 3 domains FORC55_3157 SM00354 helix_turn _helix lactose operon repressor FORC55_3160 SM00387 Histidine kinase-like ATPases FORC55_3160 SM00448 cheY-homologous receiver domain FORC55_3171 SM00052 Putative diguanylate phosphodiesterase FORC55_3174 SM00867 YceI-like domain FORC55_3176 SM00116 Domain in cystathionine beta-synthase and other proteins. FORC55_3184 SM00782 PhnA Zinc-Ribbon FORC55_3191 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_3191 SM00267 diguanylate cyclase FORC55_3194 SM00267 diguanylate cyclase FORC55_3197 SM01002 Alanine dehydrogenase/PNT, C-terminal domain FORC55_3197 SM01003 Alanine dehydrogenase/PNT, N-terminal domain FORC55_3199 SM00387 Histidine kinase-like ATPases FORC55_3199 SM00388 His Kinase A (phosphoacceptor) domain FORC55_3200 SM00448 cheY-homologous receiver domain FORC55_3200 SM00862 Transcriptional regulatory protein, C terminal FORC55_3204 SM01321 FORC55_3204 FORC55_3209 SM00881 CoA binding domain FORC55_3223 SM00382 ATPases associated with a variety of cellular activities FORC55_3235 SM00345 helix_turn_helix gluconate operon transcriptional repressor FORC55_3235 SM00866 FORC55_3235 FORC55_3237 SM00382 ATPases associated with a variety of cellular activities FORC55_3243 SM00632 FORC55_3243 FORC55_3243 SM00642 Alpha-amylase domain FORC55_3243 SM01065 Starch binding domain FORC55_3244 SM00382 ATPases associated with a variety of cellular activities FORC55_3251 SM00642 Alpha-amylase domain FORC55_3261 SM00852 Probable molybdopterin binding domain FORC55_3264 SM00450 Rhodanese Homology Domain FORC55_3265 SM00636 FORC55_3265 FORC55_3268 SM00861 Transketolase, pyrimidine binding domain FORC55_3288 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor FORC55_3290 SM00450 Rhodanese Homology Domain FORC55_3292 SM00563 Phosphate acyltransferases FORC55_3300 SM00354 helix_turn _helix lactose operon repressor FORC55_3301 SM00640 Glycosyl hydrolases family 32 FORC55_3304 SM00091 PAS domain FORC55_3304 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3311 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3314 SM00421 helix_turn_helix, Lux Regulon FORC55_3314 SM00448 cheY-homologous receiver domain FORC55_3315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3315 SM00387 Histidine kinase-like ATPases FORC55_3318 SM00926 Molybdopterin oxidoreductase Fe4S4 domain FORC55_3321 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_3322 SM00421 helix_turn_helix, Lux Regulon FORC55_3322 SM00448 cheY-homologous receiver domain FORC55_3323 SM00387 Histidine kinase-like ATPases FORC55_3327 SM00382 ATPases associated with a variety of cellular activities FORC55_3332 SM00822 FORC55_3332 FORC55_3337 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) FORC55_3337 SM00267 diguanylate cyclase FORC55_3339 SM00495 Chitin-binding domain type 3 FORC55_3339 SM00636 FORC55_3339 FORC55_3342 SM00448 cheY-homologous receiver domain FORC55_3343 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3343 SM00387 Histidine kinase-like ATPases FORC55_3343 SM00388 His Kinase A (phosphoacceptor) domain FORC55_3347 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3347 SM00387 Histidine kinase-like ATPases FORC55_3347 SM00388 His Kinase A (phosphoacceptor) domain FORC55_3347 SM00448 cheY-homologous receiver domain FORC55_3349 SM00851 MGS-like domain FORC55_3355 SM00989 FORC55_3355 FORC55_3359 SM00382 ATPases associated with a variety of cellular activities FORC55_3368 SM00387 Histidine kinase-like ATPases FORC55_3368 SM00388 His Kinase A (phosphoacceptor) domain FORC55_3368 SM00448 cheY-homologous receiver domain FORC55_3390 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_3390 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. FORC55_3391 SM00382 ATPases associated with a variety of cellular activities FORC55_3393 SM00327 von Willebrand factor (vWF) type A domain FORC55_3394 SM00382 ATPases associated with a variety of cellular activities FORC55_3399 SM00487 DEAD-like helicases superfamily FORC55_3399 SM00490 helicase superfamily c-terminal domain FORC55_3403 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3406 SM00796 Allophanate hydrolase subunit 1 FORC55_3407 SM00797 Allophanate hydrolase subunit 2 FORC55_3409 SM00984 UDP binding domain FORC55_3411 SM00382 ATPases associated with a variety of cellular activities FORC55_3414 SM00052 Putative diguanylate phosphodiesterase FORC55_3414 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. FORC55_3414 SM00267 diguanylate cyclase FORC55_3416 SM00271 DnaJ molecular chaperone homology domain FORC55_3423 SM00020 Trypsin-like serine protease FORC55_3424 SM00487 DEAD-like helicases superfamily FORC55_3424 SM00490 helicase superfamily c-terminal domain FORC55_3425 SM00357 Cold shock protein domain FORC55_3425 SM00955 FORC55_3425 FORC55_3436 SM00924 MgtE intracellular N domain FORC55_3437 SM00883 Chaperonin 10 Kd subunit FORC55_3453 SM01266 FORC55_3453 FORC55_3454 SM01091 Transporter associated domain FORC55_3458 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FORC55_3464 SM00642 Alpha-amylase domain FORC55_3474 SM00316 Ribosomal protein S1-like RNA-binding domain FORC55_3474 SM00357 Cold shock protein domain FORC55_3474 SM00955 FORC55_3474 FORC55_3475 SM00357 Cold shock protein domain FORC55_3477 SM00052 Putative diguanylate phosphodiesterase FORC55_3478 SM00829 Enoylreductase FORC55_3486 SM00481 DNA polymerase alpha chain like domain FORC55_3488 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_3491 SM01350 FORC55_3491 FORC55_3492 SM00849 Metallo-beta-lactamase superfamily FORC55_3496 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3496 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3499 SM00729 Elongator protein 3, MiaB family, Radical SAM FORC55_3505 SM00382 ATPases associated with a variety of cellular activities FORC55_3511 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3511 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3514 SM00342 helix_turn_helix, arabinose operon control protein FORC55_3520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. FORC55_3521 SM00357 Cold shock protein domain FORC55_3524 SM00342 helix_turn_helix, arabinose operon control protein FORC55_3526 SM00091 PAS domain FORC55_3526 SM00267 diguanylate cyclase FORC55_3528 SM00420 helix_turn_helix, Deoxyribose operon repressor FORC55_3528 SM01134 FORC55_3528 FORC55_3534 SM00382 ATPases associated with a variety of cellular activities FORC55_3537 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. FORC55_3539 SM00421 helix_turn_helix, Lux Regulon FORC55_3541 SM00260 Two component signalling adaptor domain FORC55_3541 SM00448 cheY-homologous receiver domain FORC55_3542 SM00347 helix_turn_helix multiple antibiotic resistance protein FORC55_3543 SM00267 diguanylate cyclase FORC55_3547 SM00267 diguanylate cyclase FORC55_3547 SM01079 FORC55_3547 FORC55_3552 SM00267 diguanylate cyclase FORC55_3558 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3558 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3561 SM00382 ATPases associated with a variety of cellular activities FORC55_3562 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_3572 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3574 SM00487 DEAD-like helicases superfamily FORC55_3574 SM00490 helicase superfamily c-terminal domain FORC55_3575 SM00342 helix_turn_helix, arabinose operon control protein FORC55_3578 SM00382 ATPases associated with a variety of cellular activities FORC55_3583 SM00342 helix_turn_helix, arabinose operon control protein FORC55_3587 SM00347 helix_turn_helix multiple antibiotic resistance protein FORC55_3597 SM00342 helix_turn_helix, arabinose operon control protein FORC55_3597 SM01009 AlkA N-terminal domain FORC55_3601 SM01154 FORC55_3601 FORC55_3604 SM00671 Sel1-like repeats. FORC55_3607 SM00642 Alpha-amylase domain FORC55_3609 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3609 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3611 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3611 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3614 SM00382 ATPases associated with a variety of cellular activities FORC55_3616 SM00062 Bacterial periplasmic substrate-binding proteins FORC55_3625 SM00849 Metallo-beta-lactamase superfamily FORC55_3630 SM00347 helix_turn_helix multiple antibiotic resistance protein FORC55_3631 SM00450 Rhodanese Homology Domain FORC55_3633 SM00342 helix_turn_helix, arabinose operon control protein FORC55_3636 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3636 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3645 SM00344 helix_turn_helix ASNC type FORC55_3646 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3651 SM00342 helix_turn_helix, arabinose operon control protein FORC55_3654 SM00421 helix_turn_helix, Lux Regulon FORC55_3658 SM00052 Putative diguanylate phosphodiesterase FORC55_3658 SM00267 diguanylate cyclase FORC55_3659 SM00382 ATPases associated with a variety of cellular activities FORC55_3661 SM00331 Sigma factor PP2C-like phosphatases FORC55_3661 SM00448 cheY-homologous receiver domain FORC55_3663 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3664 SM00448 cheY-homologous receiver domain FORC55_3666 SM00138 Methyltransferase, chemotaxis proteins FORC55_3667 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). FORC55_3667 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain FORC55_3668 SM00260 Two component signalling adaptor domain FORC55_3669 SM00260 Two component signalling adaptor domain FORC55_3670 SM00073 Histidine Phosphotransfer domain FORC55_3670 SM00260 Two component signalling adaptor domain FORC55_3670 SM00387 Histidine kinase-like ATPases FORC55_3670 SM01231 FORC55_3670 FORC55_3671 SM00448 cheY-homologous receiver domain FORC55_3676 SM00382 ATPases associated with a variety of cellular activities FORC55_3678 SM00387 Histidine kinase-like ATPases FORC55_3678 SM00388 His Kinase A (phosphoacceptor) domain FORC55_3679 SM00448 cheY-homologous receiver domain FORC55_3679 SM00862 Transcriptional regulatory protein, C terminal FORC55_3681 SM00822 FORC55_3681 FORC55_3682 SM01236 FORC55_3682