VCLMA_A0006 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0008 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_A0010 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0010 SM00760 Bacterial dnaA protein helix-turn-helix domain VCLMA_A0011 SM00480 DNA polymerase III beta subunit VCLMA_A0024 SM00829 Enoylreductase VCLMA_A0031 SM00563 Phosphate acyltransferases VCLMA_A0045 SM00257 Lysin motif VCLMA_A0050 SM01001 AIR carboxylase VCLMA_A0062 SM00876 Biotin and Thiamin Synthesis associated domain VCLMA_A0067 SM00344 helix_turn_helix ASNC type VCLMA_A0068 SM00052 Putative diguanylate phosphodiesterase VCLMA_A0068 SM00091 PAS domain VCLMA_A0068 SM00267 diguanylate cyclase VCLMA_A0088 SM00563 Phosphate acyltransferases VCLMA_A0092 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCLMA_A0092 SM00091 PAS domain VCLMA_A0092 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A0094 SM00450 Rhodanese Homology Domain VCLMA_A0097 SM01004 Delta-aminolevulinic acid dehydratase VCLMA_A0100 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VCLMA_A0100 SM00474 3'-5' exonuclease VCLMA_A0100 SM00475 5'-3' exonuclease VCLMA_A0100 SM00482 DNA polymerase A domain VCLMA_A0106 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A0113 SM01219 VCLMA_A0113 VCLMA_A0120 SM00052 Putative diguanylate phosphodiesterase VCLMA_A0120 SM00267 diguanylate cyclase VCLMA_A0120 SM00897 FIST N domain VCLMA_A0120 SM01204 VCLMA_A0120 VCLMA_A0121 SM01144 VCLMA_A0121 VCLMA_A0134 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0134 SM00962 SRP54-type protein, GTPase domain VCLMA_A0134 SM00963 SRP54-type protein, helical bundle domain VCLMA_A0135 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0154 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0164 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_A0168 SM00341 Helicase and RNase D C-terminal VCLMA_A0168 SM00487 DEAD-like helicases superfamily VCLMA_A0168 SM00490 helicase superfamily c-terminal domain VCLMA_A0168 SM00956 VCLMA_A0168 VCLMA_A0173 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0188 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A0188 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A0188 SM01049 VCLMA_A0188 VCLMA_A0193 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VCLMA_A0193 SM01232 VCLMA_A0193 VCLMA_A0218 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0230 SM00849 Metallo-beta-lactamase superfamily VCLMA_A0230 SM01027 Beta-Casp domain VCLMA_A0232 SM00986 Uracil DNA glycosylase superfamily VCLMA_A0232 SM00987 UreE urease accessory protein, C-terminal domain VCLMA_A0238 SM00411 bacterial (prokaryotic) histone like domain VCLMA_A0240 SM01209 VCLMA_A0240 VCLMA_A0240 SM01210 VCLMA_A0240 VCLMA_A0241 SM00798 AICARFT/IMPCHase bienzyme VCLMA_A0241 SM00851 MGS-like domain VCLMA_A0243 SM00422 helix_turn_helix, mercury resistance VCLMA_A0244 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A0247 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A0247 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A0247 SM01049 VCLMA_A0247 VCLMA_A0255 SM00354 helix_turn _helix lactose operon repressor VCLMA_A0259 SM00878 Biotin carboxylase C-terminal domain VCLMA_A0263 SM00479 VCLMA_A0263 VCLMA_A0264 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_A0266 SM00387 Histidine kinase-like ATPases VCLMA_A0266 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A0266 SM00448 cheY-homologous receiver domain VCLMA_A0268 SM00487 DEAD-like helicases superfamily VCLMA_A0268 SM00490 helicase superfamily c-terminal domain VCLMA_A0270 SM00357 Cold shock protein domain VCLMA_A0270 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0270 SM00959 Rho termination factor, N-terminal domain VCLMA_A0275 SM00155 Phospholipase D. Active site motifs. VCLMA_A0282 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VCLMA_A0282 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VCLMA_A0283 SM00649 Ribosomal protein L11/L12 VCLMA_A0303 SM00257 Lysin motif VCLMA_A0303 SM00646 VCLMA_A0303 VCLMA_A0309 SM00244 prohibitin homologues VCLMA_A0312 SM00320 WD40 repeats VCLMA_A0320 SM00838 Elongation factor G C-terminus VCLMA_A0320 SM00889 Elongation factor G, domain IV VCLMA_A0329 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0330 SM01005 Alanine racemase, C-terminal domain VCLMA_A0348 SM01018 B12 binding domain VCLMA_A0354 SM00421 helix_turn_helix, Lux Regulon VCLMA_A0360 SM00965 Secretin and TonB N terminus short domain VCLMA_A0362 SM00028 Tetratricopeptide repeats VCLMA_A0363 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0377 SM00316 Ribosomal protein S1-like RNA-binding domain VCLMA_A0401 SM00650 Ribosomal RNA adenine dimethylases VCLMA_A0405 SM00271 DnaJ molecular chaperone homology domain VCLMA_A0406 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A0406 SM01049 VCLMA_A0406 VCLMA_A0409 SM00478 endonuclease III VCLMA_A0409 SM00525 VCLMA_A0409 VCLMA_A0413 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A0416 SM01152 VCLMA_A0416 VCLMA_A0420 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0422 SM00421 helix_turn_helix, Lux Regulon VCLMA_A0423 SM00363 S4 RNA-binding domain VCLMA_A0424 SM00732 Likely ribonuclease with RNase H fold. VCLMA_A0429 SM00731 SprT homologues. VCLMA_A0434 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCLMA_A0443 SM00420 helix_turn_helix, Deoxyribose operon repressor VCLMA_A0443 SM01134 VCLMA_A0443 VCLMA_A0446 SM00563 Phosphate acyltransferases VCLMA_A0454 SM01207 VCLMA_A0454 VCLMA_A0455 SM00905 Dihydroneopterin aldolase VCLMA_A0464 SM00257 Lysin motif VCLMA_A0466 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VCLMA_A0466 SM00534 ATPase domain of DNA mismatch repair MUTS family VCLMA_A0473 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0475 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VCLMA_A0480 SM00829 Enoylreductase VCLMA_A0485 SM01091 Transporter associated domain VCLMA_A0487 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0487 SM00962 SRP54-type protein, GTPase domain VCLMA_A0487 SM00963 SRP54-type protein, helical bundle domain VCLMA_A0492 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VCLMA_A0503 SM00749 bacterial OsmY and nodulation domain VCLMA_A0510 SM00947 Carbonic anhydrase VCLMA_A0512 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0522 SM00487 DEAD-like helicases superfamily VCLMA_A0522 SM00490 helicase superfamily c-terminal domain VCLMA_A0522 SM00847 Helicase associated domain (HA2) Add an annotation VCLMA_A0527 SM00938 Nitrogen regulatory protein P-II VCLMA_A0531 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0533 SM01068 Putative carbohydrate binding domain VCLMA_A0537 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0538 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0542 SM00091 PAS domain VCLMA_A0542 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A0542 SM00387 Histidine kinase-like ATPases VCLMA_A0542 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A0542 SM00448 cheY-homologous receiver domain VCLMA_A0552 SM00363 S4 RNA-binding domain VCLMA_A0556 SM01103 VCLMA_A0556 VCLMA_A0558 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0563 SM00316 Ribosomal protein S1-like RNA-binding domain VCLMA_A0563 SM00322 K homology RNA-binding domain VCLMA_A0567 SM01387 VCLMA_A0567 VCLMA_A0569 SM00028 Tetratricopeptide repeats VCLMA_A0570 SM00347 helix_turn_helix multiple antibiotic resistance protein VCLMA_A0574 SM00052 Putative diguanylate phosphodiesterase VCLMA_A0574 SM00091 PAS domain VCLMA_A0574 SM00267 diguanylate cyclase VCLMA_A0579 SM00052 Putative diguanylate phosphodiesterase VCLMA_A0579 SM00267 diguanylate cyclase VCLMA_A0581 SM00487 DEAD-like helicases superfamily VCLMA_A0581 SM00490 helicase superfamily c-terminal domain VCLMA_A0584 SM00937 VCLMA_A0584 VCLMA_A0586 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0591 SM00927 DNA mismatch repair enzyme MutH VCLMA_A0594 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VCLMA_A0600 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VCLMA_A0603 SM00904 Riboflavin kinase VCLMA_A0613 SM00448 cheY-homologous receiver domain VCLMA_A0613 SM00850 LytTr DNA-binding domain VCLMA_A0616 SM00830 Chorismate mutase type II VCLMA_A0618 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0622 SM00052 Putative diguanylate phosphodiesterase VCLMA_A0622 SM00267 diguanylate cyclase VCLMA_A0624 SM00830 Chorismate mutase type II VCLMA_A0628 SM00363 S4 RNA-binding domain VCLMA_A0636 SM00448 cheY-homologous receiver domain VCLMA_A0636 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A0637 SM00091 PAS domain VCLMA_A0637 SM00387 Histidine kinase-like ATPases VCLMA_A0637 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A0643 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0651 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_A0654 SM01323 VCLMA_A0654 VCLMA_A0663 SM00271 DnaJ molecular chaperone homology domain VCLMA_A0668 SM00562 VCLMA_A0668 VCLMA_A0670 SM00530 Helix-turn-helix XRE-family like proteins VCLMA_A0674 SM00564 beta-propeller repeat VCLMA_A0675 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0679 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_A0679 SM01240 VCLMA_A0679 VCLMA_A0681 SM00495 Chitin-binding domain type 3 VCLMA_A0691 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0694 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0702 SM00448 cheY-homologous receiver domain VCLMA_A0703 SM00091 PAS domain VCLMA_A0703 SM00387 Histidine kinase-like ATPases VCLMA_A0719 SM00487 DEAD-like helicases superfamily VCLMA_A0719 SM00490 helicase superfamily c-terminal domain VCLMA_A0721 SM00530 Helix-turn-helix XRE-family like proteins VCLMA_A0733 SM00271 DnaJ molecular chaperone homology domain VCLMA_A0742 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_A0745 SM01211 VCLMA_A0745 VCLMA_A0760 SM00861 Transketolase, pyrimidine binding domain VCLMA_A0765 SM00981 VCLMA_A0765 VCLMA_A0768 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VCLMA_A0768 SM00475 5'-3' exonuclease VCLMA_A0770 SM00267 diguanylate cyclase VCLMA_A0771 SM00028 Tetratricopeptide repeats VCLMA_A0777 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0777 SM00930 VCLMA_A0777 VCLMA_A0779 SM00354 helix_turn _helix lactose operon repressor VCLMA_A0782 SM00642 Alpha-amylase domain VCLMA_A0786 SM00984 UDP binding domain VCLMA_A0792 SM00710 Parallel beta-helix repeats VCLMA_A0805 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A0808 SM00936 Penicillin-binding protein 5, C-terminal domain VCLMA_A0818 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_A0818 SM01091 Transporter associated domain VCLMA_A0821 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A0828 SM00771 ZipA, C-terminal domain (FtsZ-binding) VCLMA_A0829 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VCLMA_A0829 SM00292 breast cancer carboxy-terminal domain VCLMA_A0829 SM00532 Ligase N family VCLMA_A0832 SM00422 helix_turn_helix, mercury resistance VCLMA_A0834 SM00244 prohibitin homologues VCLMA_A0842 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A0843 SM00387 Histidine kinase-like ATPases VCLMA_A0848 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VCLMA_A0848 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VCLMA_A0863 SM00479 VCLMA_A0863 VCLMA_A0868 SM00478 endonuclease III VCLMA_A0868 SM00525 VCLMA_A0868 VCLMA_A0870 SM00900 VCLMA_A0870 VCLMA_A0876 SM00487 DEAD-like helicases superfamily VCLMA_A0876 SM00490 helicase superfamily c-terminal domain VCLMA_A0877 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0877 SM00448 cheY-homologous receiver domain VCLMA_A0880 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A0886 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_A0906 SM00448 cheY-homologous receiver domain VCLMA_A0910 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0912 SM00493 VCLMA_A0912 VCLMA_A0918 SM00344 helix_turn_helix ASNC type VCLMA_A0923 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_A0923 SM00267 diguanylate cyclase VCLMA_A0924 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VCLMA_A0925 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCLMA_A0928 SM00495 Chitin-binding domain type 3 VCLMA_A0928 SM00636 VCLMA_A0928 VCLMA_A0931 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_A0936 SM00448 cheY-homologous receiver domain VCLMA_A0937 SM00448 cheY-homologous receiver domain VCLMA_A0939 SM00387 Histidine kinase-like ATPases VCLMA_A0939 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A0940 SM00387 Histidine kinase-like ATPases VCLMA_A0941 SM00052 Putative diguanylate phosphodiesterase VCLMA_A0941 SM00448 cheY-homologous receiver domain VCLMA_A0942 SM00448 cheY-homologous receiver domain VCLMA_A0943 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A0943 SM00387 Histidine kinase-like ATPases VCLMA_A0948 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0949 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0957 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0958 SM00267 diguanylate cyclase VCLMA_A0962 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0966 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A0966 SM00876 Biotin and Thiamin Synthesis associated domain VCLMA_A0984 SM00528 Domain in histone-like proteins of HNS family VCLMA_A0996 SM00357 Cold shock protein domain VCLMA_A0998 SM00382 ATPases associated with a variety of cellular activities VCLMA_A0998 SM01086 C-terminal, D2-small domain, of ClpB protein VCLMA_A1009 SM00448 cheY-homologous receiver domain VCLMA_A1010 SM00387 Histidine kinase-like ATPases VCLMA_A1029 SM00481 DNA polymerase alpha chain like domain VCLMA_A1031 SM00363 S4 RNA-binding domain VCLMA_A1032 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1037 SM00267 diguanylate cyclase VCLMA_A1040 SM00919 Malic enzyme, NAD binding domain VCLMA_A1040 SM01274 VCLMA_A1040 VCLMA_A1045 SM00271 DnaJ molecular chaperone homology domain VCLMA_A1045 SM00671 Sel1-like repeats. VCLMA_A1051 SM00020 Trypsin-like serine protease VCLMA_A1057 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCLMA_A1057 SM00866 VCLMA_A1057 VCLMA_A1060 SM00841 Elongation factor P, C-terminal VCLMA_A1060 SM01185 VCLMA_A1060 VCLMA_A1062 SM00052 Putative diguanylate phosphodiesterase VCLMA_A1063 SM00486 DNA polymerase type-B family VCLMA_A1064 SM00421 helix_turn_helix, Lux Regulon VCLMA_A1064 SM00448 cheY-homologous receiver domain VCLMA_A1065 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VCLMA_A1065 SM00465 GIY-YIG type nucleases (URI domain) VCLMA_A1067 SM00267 diguanylate cyclase VCLMA_A1071 SM00873 B3/4 domain VCLMA_A1071 SM00874 tRNA synthetase B5 domain VCLMA_A1071 SM00896 Ferredoxin-fold anticodon binding domain VCLMA_A1072 SM00411 bacterial (prokaryotic) histone like domain VCLMA_A1087 SM00855 Phosphoglycerate mutase family VCLMA_A1090 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1093 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1093 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1093 SM01049 VCLMA_A1093 VCLMA_A1103 SM00450 Rhodanese Homology Domain VCLMA_A1104 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_A1114 SM00849 Metallo-beta-lactamase superfamily VCLMA_A1120 SM00387 Histidine kinase-like ATPases VCLMA_A1120 SM01049 VCLMA_A1120 VCLMA_A1121 SM00421 helix_turn_helix, Lux Regulon VCLMA_A1121 SM00448 cheY-homologous receiver domain VCLMA_A1122 SM00347 helix_turn_helix multiple antibiotic resistance protein VCLMA_A1124 SM00495 Chitin-binding domain type 3 VCLMA_A1130 SM00354 helix_turn _helix lactose operon repressor VCLMA_A1133 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1134 SM00479 VCLMA_A1134 VCLMA_A1135 SM00100 Cyclic nucleotide-monophosphate binding domain VCLMA_A1135 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_A1137 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1137 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_A1140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1150 SM00091 PAS domain VCLMA_A1150 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1157 SM00387 Histidine kinase-like ATPases VCLMA_A1161 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1161 SM00387 Histidine kinase-like ATPases VCLMA_A1161 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A1162 SM00448 cheY-homologous receiver domain VCLMA_A1162 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A1175 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCLMA_A1175 SM00895 VCLMA_A1175 VCLMA_A1187 SM00448 cheY-homologous receiver domain VCLMA_A1187 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_A1190 SM00267 diguanylate cyclase VCLMA_A1191 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VCLMA_A1195 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1198 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_A1203 SM00028 Tetratricopeptide repeats VCLMA_A1203 SM00267 diguanylate cyclase VCLMA_A1206 SM00267 diguanylate cyclase VCLMA_A1208 SM00267 diguanylate cyclase VCLMA_A1212 SM00267 diguanylate cyclase VCLMA_A1212 SM01079 VCLMA_A1212 VCLMA_A1213 SM00479 VCLMA_A1213 VCLMA_A1218 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1218 SM00487 DEAD-like helicases superfamily VCLMA_A1218 SM00490 helicase superfamily c-terminal domain VCLMA_A1218 SM00847 Helicase associated domain (HA2) Add an annotation VCLMA_A1227 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1228 SM00448 cheY-homologous receiver domain VCLMA_A1230 SM00073 Histidine Phosphotransfer domain VCLMA_A1230 SM00260 Two component signalling adaptor domain VCLMA_A1230 SM00387 Histidine kinase-like ATPases VCLMA_A1230 SM01231 VCLMA_A1230 VCLMA_A1231 SM00448 cheY-homologous receiver domain VCLMA_A1232 SM00138 Methyltransferase, chemotaxis proteins VCLMA_A1234 SM00448 cheY-homologous receiver domain VCLMA_A1235 SM00260 Two component signalling adaptor domain VCLMA_A1236 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1237 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1237 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1238 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCLMA_A1238 SM00091 PAS domain VCLMA_A1238 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1239 SM00487 DEAD-like helicases superfamily VCLMA_A1239 SM00490 helicase superfamily c-terminal domain VCLMA_A1244 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1244 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1256 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1261 SM00100 Cyclic nucleotide-monophosphate binding domain VCLMA_A1261 SM00419 helix_turn_helix, cAMP Regulatory protein VCLMA_A1270 SM00897 FIST N domain VCLMA_A1270 SM01204 VCLMA_A1270 VCLMA_A1271 SM00387 Histidine kinase-like ATPases VCLMA_A1271 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A1271 SM00448 cheY-homologous receiver domain VCLMA_A1272 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1274 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1286 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1288 SM00981 VCLMA_A1288 VCLMA_A1295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VCLMA_A1295 SM00245 tail specific protease VCLMA_A1296 SM00945 ProQ/FINO family VCLMA_A1298 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1302 SM00316 Ribosomal protein S1-like RNA-binding domain VCLMA_A1318 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1319 SM00387 Histidine kinase-like ATPases VCLMA_A1319 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A1320 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1320 SM00448 cheY-homologous receiver domain VCLMA_A1323 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1325 SM00852 Probable molybdopterin binding domain VCLMA_A1329 SM01144 VCLMA_A1329 VCLMA_A1331 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1348 SM00420 helix_turn_helix, Deoxyribose operon repressor VCLMA_A1348 SM01134 VCLMA_A1348 VCLMA_A1352 SM00354 helix_turn _helix lactose operon repressor VCLMA_A1356 SM00849 Metallo-beta-lactamase superfamily VCLMA_A1361 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1368 SM01022 VCLMA_A1368 VCLMA_A1376 SM00248 ankyrin repeats VCLMA_A1382 SM00822 VCLMA_A1382 VCLMA_A1383 SM00052 Putative diguanylate phosphodiesterase VCLMA_A1384 SM00267 diguanylate cyclase VCLMA_A1390 SM00267 diguanylate cyclase VCLMA_A1393 SM00260 Two component signalling adaptor domain VCLMA_A1393 SM00448 cheY-homologous receiver domain VCLMA_A1395 SM00448 cheY-homologous receiver domain VCLMA_A1396 SM00387 Histidine kinase-like ATPases VCLMA_A1403 SM00028 Tetratricopeptide repeats VCLMA_A1403 SM00386 HAT (Half-A-TPR) repeats VCLMA_A1419 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1424 SM00363 S4 RNA-binding domain VCLMA_A1425 SM00487 DEAD-like helicases superfamily VCLMA_A1425 SM00490 helicase superfamily c-terminal domain VCLMA_A1427 SM00448 cheY-homologous receiver domain VCLMA_A1427 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A1428 SM00387 Histidine kinase-like ATPases VCLMA_A1430 SM00052 Putative diguanylate phosphodiesterase VCLMA_A1437 SM00020 Trypsin-like serine protease VCLMA_A1439 SM00448 cheY-homologous receiver domain VCLMA_A1440 SM00052 Putative diguanylate phosphodiesterase VCLMA_A1440 SM00421 helix_turn_helix, Lux Regulon VCLMA_A1440 SM00448 cheY-homologous receiver domain VCLMA_A1441 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_A1441 SM00073 Histidine Phosphotransfer domain VCLMA_A1441 SM00387 Histidine kinase-like ATPases VCLMA_A1441 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A1441 SM00448 cheY-homologous receiver domain VCLMA_A1441 SM00918 Ligated ion channel L-glutamate- and glycine-binding site VCLMA_A1442 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_A1447 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1454 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1458 SM00155 Phospholipase D. Active site motifs. VCLMA_A1459 SM00155 Phospholipase D. Active site motifs. VCLMA_A1469 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1473 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1474 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1477 SM01131 VCLMA_A1477 VCLMA_A1497 SM00052 Putative diguanylate phosphodiesterase VCLMA_A1497 SM00091 PAS domain VCLMA_A1498 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A1505 SM00448 cheY-homologous receiver domain VCLMA_A1505 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A1520 SM00316 Ribosomal protein S1-like RNA-binding domain VCLMA_A1538 SM01130 VCLMA_A1538 VCLMA_A1571 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1578 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_A1582 SM00387 Histidine kinase-like ATPases VCLMA_A1582 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A1582 SM00448 cheY-homologous receiver domain VCLMA_A1594 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1595 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VCLMA_A1597 SM00840 VCLMA_A1597 VCLMA_A1604 SM00491 VCLMA_A1604 VCLMA_A1608 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1608 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1612 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_A1612 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VCLMA_A1613 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1617 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1617 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1621 SM00763 PrkA AAA domain VCLMA_A1626 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1627 SM00849 Metallo-beta-lactamase superfamily VCLMA_A1630 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1644 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1644 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1646 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCLMA_A1649 SM00843 VCLMA_A1649 VCLMA_A1651 SM00344 helix_turn_helix ASNC type VCLMA_A1652 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VCLMA_A1652 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VCLMA_A1658 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VCLMA_A1659 SM00028 Tetratricopeptide repeats VCLMA_A1661 SM00411 bacterial (prokaryotic) histone like domain VCLMA_A1662 SM00316 Ribosomal protein S1-like RNA-binding domain VCLMA_A1664 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VCLMA_A1666 SM00411 bacterial (prokaryotic) histone like domain VCLMA_A1668 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1668 SM00994 ClpX C4-type zinc finger VCLMA_A1668 SM01086 C-terminal, D2-small domain, of ClpB protein VCLMA_A1671 SM00387 Histidine kinase-like ATPases VCLMA_A1671 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A1672 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1672 SM00448 cheY-homologous receiver domain VCLMA_A1679 SM00052 Putative diguanylate phosphodiesterase VCLMA_A1679 SM00267 diguanylate cyclase VCLMA_A1682 SM00563 Phosphate acyltransferases VCLMA_A1695 SM00495 Chitin-binding domain type 3 VCLMA_A1695 SM00636 VCLMA_A1695 VCLMA_A1705 SM00978 VCLMA_A1705 VCLMA_A1707 SM00563 Phosphate acyltransferases VCLMA_A1709 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1709 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1710 SM00530 Helix-turn-helix XRE-family like proteins VCLMA_A1713 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VCLMA_A1719 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_A1720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_A1721 SM01144 VCLMA_A1721 VCLMA_A1724 SM00474 3'-5' exonuclease VCLMA_A1730 SM00487 DEAD-like helicases superfamily VCLMA_A1730 SM00491 VCLMA_A1730 VCLMA_A1735 SM00870 VCLMA_A1735 VCLMA_A1739 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCLMA_A1745 SM00260 Two component signalling adaptor domain VCLMA_A1745 SM00448 cheY-homologous receiver domain VCLMA_A1758 SM00825 Beta-ketoacyl synthase VCLMA_A1760 SM00822 VCLMA_A1760 VCLMA_A1761 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VCLMA_A1767 SM00363 S4 RNA-binding domain VCLMA_A1768 SM00316 Ribosomal protein S1-like RNA-binding domain VCLMA_A1773 SM00859 Semialdehyde dehydrogenase, NAD binding domain VCLMA_A1775 SM00073 Histidine Phosphotransfer domain VCLMA_A1780 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VCLMA_A1780 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VCLMA_A1780 SM00493 VCLMA_A1780 VCLMA_A1795 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1797 SM00260 Two component signalling adaptor domain VCLMA_A1798 SM00260 Two component signalling adaptor domain VCLMA_A1800 SM00448 cheY-homologous receiver domain VCLMA_A1801 SM00073 Histidine Phosphotransfer domain VCLMA_A1801 SM00260 Two component signalling adaptor domain VCLMA_A1801 SM00387 Histidine kinase-like ATPases VCLMA_A1801 SM01231 VCLMA_A1801 VCLMA_A1803 SM00448 cheY-homologous receiver domain VCLMA_A1806 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1806 SM00962 SRP54-type protein, GTPase domain VCLMA_A1808 SM00855 Phosphoglycerate mutase family VCLMA_A1811 SM00836 DALR anticodon binding domain VCLMA_A1811 SM01016 Arginyl tRNA synthetase N terminal dom VCLMA_A1815 SM00899 VCLMA_A1815 VCLMA_A1816 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_A1818 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1820 SM00881 CoA binding domain VCLMA_A1823 SM00861 Transketolase, pyrimidine binding domain VCLMA_A1841 SM00859 Semialdehyde dehydrogenase, NAD binding domain VCLMA_A1843 SM00825 Beta-ketoacyl synthase VCLMA_A1851 SM00463 Small MutS-related domain VCLMA_A1863 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1868 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1868 SM00448 cheY-homologous receiver domain VCLMA_A1869 SM00091 PAS domain VCLMA_A1869 SM00387 Histidine kinase-like ATPases VCLMA_A1869 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A1870 SM00382 ATPases associated with a variety of cellular activities VCLMA_A1887 SM01130 VCLMA_A1887 VCLMA_A1890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A1890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A1893 SM00028 Tetratricopeptide repeats VCLMA_A1906 SM00937 VCLMA_A1906 VCLMA_A1910 SM01400 VCLMA_A1910 VCLMA_A1917 SM00047 Lysozyme subfamily 2 VCLMA_A1926 SM00138 Methyltransferase, chemotaxis proteins VCLMA_A1927 SM00260 Two component signalling adaptor domain VCLMA_A1927 SM00448 cheY-homologous receiver domain VCLMA_A1928 SM00858 VCLMA_A1928 VCLMA_A1934 SM00823 Phosphopantetheine attachment site VCLMA_A1942 SM01081 Putative carbohydrate binding domain VCLMA_A1947 SM00463 Small MutS-related domain VCLMA_A1948 SM00363 S4 RNA-binding domain VCLMA_A1949 SM00267 diguanylate cyclase VCLMA_A1957 SM00479 VCLMA_A1957 VCLMA_A1960 SM00849 Metallo-beta-lactamase superfamily VCLMA_A1961 SM00257 Lysin motif VCLMA_A1963 SM00938 Nitrogen regulatory protein P-II VCLMA_A1966 SM00977 TilS substrate C-terminal domain VCLMA_A1968 SM00481 DNA polymerase alpha chain like domain VCLMA_A1974 SM00935 Outer membrane protein (OmpH-like) VCLMA_A1976 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VCLMA_A1985 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_A1996 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VCLMA_A2006 SM00267 diguanylate cyclase VCLMA_A2014 SM00900 VCLMA_A2014 VCLMA_A2024 SM00464 Found in ATP-dependent protease La (LON) VCLMA_A2031 SM00925 MltA specific insert domain VCLMA_A2048 SM00354 helix_turn _helix lactose operon repressor VCLMA_A2049 SM01038 Beta galactosidase small chain VCLMA_A2053 SM00838 Elongation factor G C-terminus VCLMA_A2053 SM00889 Elongation factor G, domain IV VCLMA_A2054 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2060 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VCLMA_A2061 SM01133 VCLMA_A2061 VCLMA_A2070 SM00986 Uracil DNA glycosylase superfamily VCLMA_A2070 SM00987 UreE urease accessory protein, C-terminal domain VCLMA_A2071 SM00518 AP endonuclease family 2 VCLMA_A2079 SM00448 cheY-homologous receiver domain VCLMA_A2079 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A2080 SM00073 Histidine Phosphotransfer domain VCLMA_A2080 SM00091 PAS domain VCLMA_A2080 SM00387 Histidine kinase-like ATPases VCLMA_A2080 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A2080 SM00448 cheY-homologous receiver domain VCLMA_A2081 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCLMA_A2081 SM00091 PAS domain VCLMA_A2081 SM00267 diguanylate cyclase VCLMA_A2082 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A2095 SM00851 MGS-like domain VCLMA_A2095 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCLMA_A2096 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VCLMA_A2100 SM00957 SecA DEAD-like domain VCLMA_A2100 SM00958 SecA preprotein cross-linking domain VCLMA_A2103 SM00864 Tubulin/FtsZ family, GTPase domain VCLMA_A2103 SM00865 Tubulin/FtsZ family, C-terminal domain VCLMA_A2104 SM00842 Cell division protein FtsA VCLMA_A2119 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCLMA_A2119 SM00895 VCLMA_A2119 VCLMA_A2125 SM00644 VCLMA_A2125 VCLMA_A2133 SM00434 DNA Topoisomerase IV VCLMA_A2134 SM00387 Histidine kinase-like ATPases VCLMA_A2134 SM00433 TopoisomeraseII VCLMA_A2142 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_A2142 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A2147 SM00287 Bacterial SH3 domain homologues VCLMA_A2149 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2151 SM01192 VCLMA_A2151 VCLMA_A2151 SM01193 VCLMA_A2151 VCLMA_A2155 SM00954 Region found in RelA / SpoT proteins VCLMA_A2157 SM00073 Histidine Phosphotransfer domain VCLMA_A2157 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A2157 SM00387 Histidine kinase-like ATPases VCLMA_A2157 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A2157 SM00448 cheY-homologous receiver domain VCLMA_A2158 SM00267 diguanylate cyclase VCLMA_A2165 SM00358 Double-stranded RNA binding motif VCLMA_A2165 SM00535 Ribonuclease III family VCLMA_A2189 SM00014 Acid phosphatase homologues VCLMA_A2191 SM00917 LeuA allosteric (dimerisation) domain VCLMA_A2192 SM01329 VCLMA_A2192 VCLMA_A2197 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_A2206 SM00487 DEAD-like helicases superfamily VCLMA_A2206 SM00490 helicase superfamily c-terminal domain VCLMA_A2213 SM00563 Phosphate acyltransferases VCLMA_A2220 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2222 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_A2226 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2232 SM00924 MgtE intracellular N domain VCLMA_A2235 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2250 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2260 SM00487 DEAD-like helicases superfamily VCLMA_A2260 SM00490 helicase superfamily c-terminal domain VCLMA_A2267 SM00662 RNA polymerases D VCLMA_A2268 SM00363 S4 RNA-binding domain VCLMA_A2268 SM01390 VCLMA_A2268 VCLMA_A2281 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VCLMA_A2282 SM01374 VCLMA_A2282 VCLMA_A2286 SM00322 K homology RNA-binding domain VCLMA_A2289 SM01382 VCLMA_A2289 VCLMA_A2289 SM01383 VCLMA_A2289 VCLMA_A2293 SM01403 VCLMA_A2293 VCLMA_A2294 SM00967 RNA 2'-O ribose methyltransferase substrate binding VCLMA_A2295 SM00316 Ribosomal protein S1-like RNA-binding domain VCLMA_A2295 SM00357 Cold shock protein domain VCLMA_A2295 SM00955 VCLMA_A2295 VCLMA_A2297 SM00671 Sel1-like repeats. VCLMA_A2298 SM00788 Adenylosuccinate synthetase VCLMA_A2304 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2309 SM00100 Cyclic nucleotide-monophosphate binding domain VCLMA_A2309 SM00419 helix_turn_helix, cAMP Regulatory protein VCLMA_A2310 SM01150 VCLMA_A2310 VCLMA_A2315 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_A2325 SM00965 Secretin and TonB N terminus short domain VCLMA_A2338 SM00859 Semialdehyde dehydrogenase, NAD binding domain VCLMA_A2345 SM00450 Rhodanese Homology Domain VCLMA_A2351 SM00841 Elongation factor P, C-terminal VCLMA_A2351 SM01185 VCLMA_A2351 VCLMA_A2355 SM00883 Chaperonin 10 Kd subunit VCLMA_A2364 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2364 SM01086 C-terminal, D2-small domain, of ClpB protein VCLMA_A2368 SM00354 helix_turn _helix lactose operon repressor VCLMA_A2369 SM00487 DEAD-like helicases superfamily VCLMA_A2369 SM00490 helicase superfamily c-terminal domain VCLMA_A2382 SM00448 cheY-homologous receiver domain VCLMA_A2382 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A2383 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A2383 SM00387 Histidine kinase-like ATPases VCLMA_A2383 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A2387 SM00267 diguanylate cyclase VCLMA_A2392 SM00421 helix_turn_helix, Lux Regulon VCLMA_A2392 SM00448 cheY-homologous receiver domain VCLMA_A2393 SM01091 Transporter associated domain VCLMA_A2398 SM00072 Guanylate kinase homologues. VCLMA_A2399 SM01409 VCLMA_A2399 VCLMA_A2400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_A2400 SM00954 Region found in RelA / SpoT proteins VCLMA_A2401 SM00487 DEAD-like helicases superfamily VCLMA_A2401 SM00490 helicase superfamily c-terminal domain VCLMA_A2403 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_A2403 SM00387 Histidine kinase-like ATPases VCLMA_A2403 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A2404 SM00448 cheY-homologous receiver domain VCLMA_A2404 SM00862 Transcriptional regulatory protein, C terminal VCLMA_A2406 SM00316 Ribosomal protein S1-like RNA-binding domain VCLMA_A2406 SM00732 Likely ribonuclease with RNase H fold. VCLMA_A2425 SM00363 S4 RNA-binding domain VCLMA_A2436 SM01230 VCLMA_A2436 VCLMA_A2438 SM00091 PAS domain VCLMA_A2438 SM00387 Histidine kinase-like ATPases VCLMA_A2438 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_A2439 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2439 SM00448 cheY-homologous receiver domain VCLMA_A2440 SM00052 Putative diguanylate phosphodiesterase VCLMA_A2440 SM00267 diguanylate cyclase VCLMA_A2454 SM00382 ATPases associated with a variety of cellular activities VCLMA_A2462 SM00470 ParB-like nuclease domain VCLMA_A2465 SM01228 VCLMA_A2465 VCLMA_B0008 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0008 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0008 SM01049 VCLMA_B0008 VCLMA_B0013 SM00642 Alpha-amylase domain VCLMA_B0024 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VCLMA_B0024 SM00495 Chitin-binding domain type 3 VCLMA_B0024 SM00636 VCLMA_B0024 VCLMA_B0027 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0027 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0031 SM00014 Acid phosphatase homologues VCLMA_B0043 SM00267 diguanylate cyclase VCLMA_B0044 SM00028 Tetratricopeptide repeats VCLMA_B0048 SM00422 helix_turn_helix, mercury resistance VCLMA_B0050 SM00257 Lysin motif VCLMA_B0053 SM00487 DEAD-like helicases superfamily VCLMA_B0053 SM00490 helicase superfamily c-terminal domain VCLMA_B0059 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0059 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0063 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0064 SM00267 diguanylate cyclase VCLMA_B0071 SM00052 Putative diguanylate phosphodiesterase VCLMA_B0071 SM00267 diguanylate cyclase VCLMA_B0074 SM00422 helix_turn_helix, mercury resistance VCLMA_B0088 SM00450 Rhodanese Homology Domain VCLMA_B0104 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0104 SM01086 C-terminal, D2-small domain, of ClpB protein VCLMA_B0105 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0113 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0117 SM00354 helix_turn _helix lactose operon repressor VCLMA_B0120 SM00100 Cyclic nucleotide-monophosphate binding domain VCLMA_B0124 SM00495 Chitin-binding domain type 3 VCLMA_B0125 SM00091 PAS domain VCLMA_B0125 SM00387 Histidine kinase-like ATPases VCLMA_B0125 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_B0126 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0126 SM00448 cheY-homologous receiver domain VCLMA_B0148 SM00267 diguanylate cyclase VCLMA_B0149 SM00357 Cold shock protein domain VCLMA_B0152 SM00028 Tetratricopeptide repeats VCLMA_B0153 SM00327 von Willebrand factor (vWF) type A domain VCLMA_B0157 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0157 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0164 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VCLMA_B0164 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0166 SM00357 Cold shock protein domain VCLMA_B0171 SM00448 cheY-homologous receiver domain VCLMA_B0178 SM01240 VCLMA_B0178 VCLMA_B0179 SM00487 DEAD-like helicases superfamily VCLMA_B0179 SM00490 helicase superfamily c-terminal domain VCLMA_B0184 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_B0185 SM00387 Histidine kinase-like ATPases VCLMA_B0190 SM00267 diguanylate cyclase VCLMA_B0193 SM00458 Ricin-type beta-trefoil VCLMA_B0194 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0194 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0197 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VCLMA_B0203 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0204 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_B0211 SM00448 cheY-homologous receiver domain VCLMA_B0211 SM00862 Transcriptional regulatory protein, C terminal VCLMA_B0214 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VCLMA_B0216 SM01007 Class II Aldolase and Adducin N-terminal domain VCLMA_B0219 SM00420 helix_turn_helix, Deoxyribose operon repressor VCLMA_B0219 SM01134 VCLMA_B0219 VCLMA_B0222 SM00642 Alpha-amylase domain VCLMA_B0226 SM00448 cheY-homologous receiver domain VCLMA_B0226 SM00862 Transcriptional regulatory protein, C terminal VCLMA_B0227 SM00387 Histidine kinase-like ATPases VCLMA_B0227 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_B0237 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0237 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0239 SM00936 Penicillin-binding protein 5, C-terminal domain VCLMA_B0242 SM01057 Eukaryotic-type carbonic anhydrase VCLMA_B0250 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VCLMA_B0255 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VCLMA_B0297 SM01321 VCLMA_B0297 VCLMA_B0317 SM00354 helix_turn _helix lactose operon repressor VCLMA_B0320 SM00387 Histidine kinase-like ATPases VCLMA_B0320 SM00448 cheY-homologous receiver domain VCLMA_B0327 SM00890 Domain of unknown function VCLMA_B0328 SM00387 Histidine kinase-like ATPases VCLMA_B0328 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_B0329 SM00448 cheY-homologous receiver domain VCLMA_B0329 SM00862 Transcriptional regulatory protein, C terminal VCLMA_B0333 SM00052 Putative diguanylate phosphodiesterase VCLMA_B0336 SM00867 YceI-like domain VCLMA_B0337 SM00116 Domain in cystathionine beta-synthase and other proteins. VCLMA_B0345 SM00782 PhnA Zinc-Ribbon VCLMA_B0354 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_B0354 SM00267 diguanylate cyclase VCLMA_B0357 SM00267 diguanylate cyclase VCLMA_B0360 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VCLMA_B0360 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VCLMA_B0362 SM00387 Histidine kinase-like ATPases VCLMA_B0362 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_B0363 SM00448 cheY-homologous receiver domain VCLMA_B0363 SM00862 Transcriptional regulatory protein, C terminal VCLMA_B0371 SM00881 CoA binding domain VCLMA_B0384 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0394 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCLMA_B0394 SM00866 VCLMA_B0394 VCLMA_B0396 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0413 SM00450 Rhodanese Homology Domain VCLMA_B0432 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VCLMA_B0434 SM00450 Rhodanese Homology Domain VCLMA_B0436 SM00563 Phosphate acyltransferases VCLMA_B0444 SM00354 helix_turn _helix lactose operon repressor VCLMA_B0445 SM00640 Glycosyl hydrolases family 32 VCLMA_B0448 SM00091 PAS domain VCLMA_B0448 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0452 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0452 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0459 SM00354 helix_turn _helix lactose operon repressor VCLMA_B0460 SM00421 helix_turn_helix, Lux Regulon VCLMA_B0460 SM00448 cheY-homologous receiver domain VCLMA_B0461 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0461 SM00387 Histidine kinase-like ATPases VCLMA_B0464 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VCLMA_B0468 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_B0469 SM00421 helix_turn_helix, Lux Regulon VCLMA_B0469 SM00448 cheY-homologous receiver domain VCLMA_B0474 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0478 SM00822 VCLMA_B0478 VCLMA_B0483 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCLMA_B0483 SM00267 diguanylate cyclase VCLMA_B0485 SM00495 Chitin-binding domain type 3 VCLMA_B0485 SM00636 VCLMA_B0485 VCLMA_B0488 SM00448 cheY-homologous receiver domain VCLMA_B0489 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0489 SM00387 Histidine kinase-like ATPases VCLMA_B0489 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_B0494 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0494 SM00387 Histidine kinase-like ATPases VCLMA_B0494 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_B0494 SM00448 cheY-homologous receiver domain VCLMA_B0496 SM00851 MGS-like domain VCLMA_B0504 SM00387 Histidine kinase-like ATPases VCLMA_B0505 SM00989 VCLMA_B0505 VCLMA_B0509 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0519 SM00387 Histidine kinase-like ATPases VCLMA_B0519 SM00388 His Kinase A (phosphoacceptor) domain VCLMA_B0519 SM00448 cheY-homologous receiver domain VCLMA_B0541 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_B0541 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VCLMA_B0542 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0544 SM00327 von Willebrand factor (vWF) type A domain VCLMA_B0545 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0550 SM00487 DEAD-like helicases superfamily VCLMA_B0550 SM00490 helicase superfamily c-terminal domain VCLMA_B0554 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0554 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0558 SM00796 Allophanate hydrolase subunit 1 VCLMA_B0559 SM00797 Allophanate hydrolase subunit 2 VCLMA_B0561 SM00984 UDP binding domain VCLMA_B0564 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0569 SM00271 DnaJ molecular chaperone homology domain VCLMA_B0581 SM00020 Trypsin-like serine protease VCLMA_B0582 SM00487 DEAD-like helicases superfamily VCLMA_B0582 SM00490 helicase superfamily c-terminal domain VCLMA_B0583 SM00357 Cold shock protein domain VCLMA_B0583 SM00955 VCLMA_B0583 VCLMA_B0595 SM00924 MgtE intracellular N domain VCLMA_B0596 SM00883 Chaperonin 10 Kd subunit VCLMA_B0612 SM01266 VCLMA_B0612 VCLMA_B0613 SM01091 Transporter associated domain VCLMA_B0618 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCLMA_B0622 SM00267 diguanylate cyclase VCLMA_B0624 SM00448 cheY-homologous receiver domain VCLMA_B0624 SM00850 LytTr DNA-binding domain VCLMA_B0625 SM00387 Histidine kinase-like ATPases VCLMA_B0629 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0633 SM00642 Alpha-amylase domain VCLMA_B0642 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCLMA_B0648 SM00829 Enoylreductase VCLMA_B0651 SM00421 helix_turn_helix, Lux Regulon VCLMA_B0657 SM00481 DNA polymerase alpha chain like domain VCLMA_B0661 SM01350 VCLMA_B0661 VCLMA_B0663 SM00849 Metallo-beta-lactamase superfamily VCLMA_B0669 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0669 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0672 SM00729 Elongator protein 3, MiaB family, Radical SAM VCLMA_B0678 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0684 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0684 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0687 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_B0692 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCLMA_B0693 SM00357 Cold shock protein domain VCLMA_B0696 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_B0698 SM00091 PAS domain VCLMA_B0698 SM00267 diguanylate cyclase VCLMA_B0699 SM00420 helix_turn_helix, Deoxyribose operon repressor VCLMA_B0699 SM01134 VCLMA_B0699 VCLMA_B0705 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0708 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VCLMA_B0710 SM00421 helix_turn_helix, Lux Regulon VCLMA_B0712 SM00260 Two component signalling adaptor domain VCLMA_B0712 SM00448 cheY-homologous receiver domain VCLMA_B0713 SM00347 helix_turn_helix multiple antibiotic resistance protein VCLMA_B0714 SM00267 diguanylate cyclase VCLMA_B0717 SM00267 diguanylate cyclase VCLMA_B0717 SM01079 VCLMA_B0717 VCLMA_B0722 SM00267 diguanylate cyclase VCLMA_B0728 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0728 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0732 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0733 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_B0742 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0744 SM00487 DEAD-like helicases superfamily VCLMA_B0744 SM00490 helicase superfamily c-terminal domain VCLMA_B0750 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0756 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_B0760 SM00347 helix_turn_helix multiple antibiotic resistance protein VCLMA_B0771 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_B0771 SM01009 AlkA N-terminal domain VCLMA_B0775 SM01154 VCLMA_B0775 VCLMA_B0778 SM00671 Sel1-like repeats. VCLMA_B0786 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0786 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0789 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0791 SM00062 Bacterial periplasmic substrate-binding proteins VCLMA_B0802 SM00450 Rhodanese Homology Domain VCLMA_B0805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0817 SM00344 helix_turn_helix ASNC type VCLMA_B0823 SM00342 helix_turn_helix, arabinose operon control protein VCLMA_B0826 SM00421 helix_turn_helix, Lux Regulon VCLMA_B0830 SM00052 Putative diguanylate phosphodiesterase VCLMA_B0830 SM00267 diguanylate cyclase VCLMA_B0831 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0833 SM00331 Sigma factor PP2C-like phosphatases VCLMA_B0833 SM00448 cheY-homologous receiver domain VCLMA_B0835 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0836 SM00448 cheY-homologous receiver domain VCLMA_B0838 SM00138 Methyltransferase, chemotaxis proteins VCLMA_B0839 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCLMA_B0839 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCLMA_B0840 SM00260 Two component signalling adaptor domain VCLMA_B0841 SM00260 Two component signalling adaptor domain VCLMA_B0842 SM00073 Histidine Phosphotransfer domain VCLMA_B0842 SM00260 Two component signalling adaptor domain VCLMA_B0842 SM00387 Histidine kinase-like ATPases VCLMA_B0842 SM01231 VCLMA_B0842 VCLMA_B0843 SM00448 cheY-homologous receiver domain VCLMA_B0848 SM00382 ATPases associated with a variety of cellular activities VCLMA_B0851 SM00448 cheY-homologous receiver domain VCLMA_B0851 SM00862 Transcriptional regulatory protein, C terminal VCLMA_B0853 SM00822 VCLMA_B0853 VCLMA_B0854 SM01236 VCLMA_B0854 VCLMA_B0859 SM00470 ParB-like nuclease domain