locus-tag class description VCM66_0002 PF00258 Flavodoxin VCM66_0003 PF01926 50S ribosome-binding GTPase VCM66_0003 PF12631 MnmE helical domain VCM66_0003 PF10396 GTP-binding protein TrmE N-terminus VCM66_0004 PF02096 60Kd inner membrane protein VCM66_0004 PF14849 YidC periplasmic domain VCM66_0005 PF01809 Putative membrane protein insertion efficiency factor VCM66_0006 PF00825 Ribonuclease P VCM66_0007 PF00468 Ribosomal protein L34 VCM66_0008 PF00005 ABC transporter VCM66_0009 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0010 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_0012 PF00308 Bacterial dnaA protein VCM66_0012 PF08299 Bacterial dnaA protein helix-turn-helix VCM66_0012 PF11638 DnaA N-terminal domain VCM66_0013 PF02767 DNA polymerase III beta subunit, central domain VCM66_0013 PF00712 DNA polymerase III beta subunit, N-terminal domain VCM66_0013 PF02768 DNA polymerase III beta subunit, C-terminal domain VCM66_0014 PF02463 RecF/RecN/SMC N terminal domain VCM66_0015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_0015 PF18053 DNA gyrase B subunit insert domain VCM66_0015 PF00986 DNA gyrase B subunit, carboxyl terminus VCM66_0015 PF00204 DNA gyrase B VCM66_0015 PF01751 Toprim domain VCM66_0018 PF00011 Hsp20/alpha crystallin family VCM66_0019 PF00155 Aminotransferase class I and II VCM66_0020 PF05746 DALR anticodon binding domain VCM66_0020 PF02092 Glycyl-tRNA synthetase beta subunit VCM66_0021 PF02091 Glycyl-tRNA synthetase alpha subunit VCM66_0022 PF01169 Uncharacterized protein family UPF0016 VCM66_0024 PF01206 Sulfurtransferase TusA VCM66_0026 PF08240 Alcohol dehydrogenase GroES-like domain VCM66_0026 PF00107 Zinc-binding dehydrogenase VCM66_0027 PF00585 C-terminal regulatory domain of Threonine dehydratase VCM66_0027 PF00291 Pyridoxal-phosphate dependent enzyme VCM66_0028 PF00920 Dehydratase family VCM66_0029 PF01063 Amino-transferase class IV VCM66_0031 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCM66_0031 PF00205 Thiamine pyrophosphate enzyme, central domain VCM66_0031 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCM66_0032 PF01078 Magnesium chelatase, subunit ChlI VCM66_0032 PF13335 Magnesium chelatase, subunit ChlI C-terminal VCM66_0033 PF01553 Acyltransferase VCM66_0034 PF01323 DSBA-like thioredoxin domain VCM66_0035 PF01636 Phosphotransferase enzyme family VCM66_0036 PF13746 4Fe-4S dicluster domain VCM66_0036 PF12801 4Fe-4S binding domain VCM66_0036 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VCM66_0037 PF06288 Protein of unknown function (DUF1040) VCM66_0039 PF07070 SpoOM protein VCM66_0040 PF03006 Haemolysin-III related VCM66_0042 PF02386 Cation transport protein VCM66_0043 PF02254 TrkA-N domain VCM66_0043 PF02080 TrkA-C domain VCM66_0044 PF01189 16S rRNA methyltransferase RsmB/F VCM66_0044 PF01029 NusB family VCM66_0045 PF02911 Formyl transferase, C-terminal domain VCM66_0045 PF00551 Formyl transferase VCM66_0046 PF01327 Polypeptide deformylase VCM66_0047 PF01476 LysM domain VCM66_0048 PF17782 DprA winged helix domain VCM66_0048 PF02481 DNA recombination-mediator protein A VCM66_0049 PF04361 Protein of unknown function (DUF494) VCM66_0050 PF01396 Topoisomerase DNA binding C4 zinc finger VCM66_0051 PF02222 ATP-grasp domain VCM66_0051 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VCM66_0052 PF00731 AIR carboxylase VCM66_0054 PF01300 Telomere recombination VCM66_0055 PF01218 Coproporphyrinogen III oxidase VCM66_0056 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VCM66_0056 PF08501 Shikimate dehydrogenase substrate binding domain VCM66_0056 PF01488 Shikimate / quinate 5-dehydrogenase VCM66_0058 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_0060 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VCM66_0061 PF13667 ThiC-associated domain VCM66_0061 PF01964 Radical SAM ThiC family VCM66_0062 PF02581 Thiamine monophosphate synthase VCM66_0063 PF00899 ThiF family VCM66_0064 PF02597 ThiS family VCM66_0065 PF05690 Thiazole biosynthesis protein ThiG VCM66_0066 PF04055 Radical SAM superfamily VCM66_0066 PF06968 Biotin and Thiamin Synthesis associated domain VCM66_0067 PF00557 Metallopeptidase family M24 VCM66_0067 PF01321 Creatinase/Prolidase N-terminal domain VCM66_0067 PF00557 Metallopeptidase family M24 VCM66_0067 PF01321 Creatinase/Prolidase N-terminal domain VCM66_0068 PF03466 LysR substrate binding domain VCM66_0068 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0069 PF07690 Major Facilitator Superfamily VCM66_0071 PF01037 Lrp/AsnC ligand binding domain VCM66_0072 PF00563 EAL domain VCM66_0072 PF00990 Diguanylate cyclase, GGDEF domain VCM66_0072 PF08448 PAS fold VCM66_0073 PF04445 Putative SAM-dependent methyltransferase VCM66_0075 PF00892 EamA-like transporter family VCM66_0076 PF00582 Universal stress protein family VCM66_0078 PF00210 Ferritin-like domain VCM66_0079 PF10625 Universal stress protein B (UspB) VCM66_0082 PF02646 RmuC family VCM66_0083 PF01209 ubiE/COQ5 methyltransferase family VCM66_0084 PF02036 SCP-2 sterol transfer family VCM66_0085 PF03109 ABC1 family VCM66_0086 PF02416 mttA/Hcf106 family VCM66_0087 PF02416 mttA/Hcf106 family VCM66_0088 PF00902 Sec-independent protein translocase protein (TatC) VCM66_0089 PF03150 Di-haem cytochrome c peroxidase VCM66_0089 PF00034 Cytochrome c VCM66_0090 PF01554 MatE VCM66_0092 PF01726 LexA DNA binding domain VCM66_0092 PF00717 Peptidase S24-like VCM66_0093 PF01553 Acyltransferase VCM66_0094 PF01040 UbiA prenyltransferase family VCM66_0095 PF04345 Chorismate lyase VCM66_0097 PF03748 Flagellar basal body-associated protein FliL VCM66_0098 PF00672 HAMP domain VCM66_0098 PF02203 Tar ligand binding domain homologue VCM66_0098 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_0099 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VCM66_0099 PF01694 Rhomboid family VCM66_0100 PF00581 Rhodanese-like domain VCM66_0103 PF01026 TatD related DNase VCM66_0105 PF00490 Delta-aminolevulinic acid dehydratase VCM66_0108 PF01367 5'-3' exonuclease, C-terminal SAM fold VCM66_0108 PF00476 DNA polymerase family A VCM66_0108 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCM66_0108 PF01612 3'-5' exonuclease VCM66_0111 PF01926 50S ribosome-binding GTPase VCM66_0112 PF00034 Cytochrome c VCM66_0114 PF04220 Der GTPase activator (YihI) VCM66_0115 PF10675 Protein of unknown function (DUF2489) VCM66_0116 PF06969 HemN C-terminal domain VCM66_0116 PF04055 Radical SAM superfamily VCM66_0117 PF07219 HemY protein N-terminus VCM66_0118 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VCM66_0119 PF02602 Uroporphyrinogen-III synthase HemD VCM66_0120 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VCM66_0120 PF03900 Porphobilinogen deaminase, C-terminal domain VCM66_0122 PF12633 Adenylate cyclase NT domain VCM66_0122 PF01295 Adenylate cyclase, class-I VCM66_0123 PF01491 Frataxin-like domain VCM66_0125 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VCM66_0125 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VCM66_0126 PF01678 Diaminopimelate epimerase VCM66_0127 PF04340 Protein of unknown function, DUF484 VCM66_0128 PF00589 Phage integrase family VCM66_0128 PF02899 Phage integrase, N-terminal SAM-like domain VCM66_0129 PF13419 Haloacid dehalogenase-like hydrolase VCM66_0130 PF00990 Diguanylate cyclase, GGDEF domain VCM66_0130 PF10442 FIST C domain VCM66_0130 PF00563 EAL domain VCM66_0130 PF08495 FIST N domain VCM66_0135 PF12146 Serine aminopeptidase, S33 VCM66_0136 PF01810 LysE type translocator VCM66_0137 PF00563 EAL domain VCM66_0137 PF08668 HDOD domain VCM66_0139 PF00210 Ferritin-like domain VCM66_0147 PF02881 SRP54-type protein, helical bundle domain VCM66_0147 PF00448 SRP54-type protein, GTPase domain VCM66_0148 PF00005 ABC transporter VCM66_0149 PF18075 FtsX extracellular domain VCM66_0150 PF04545 Sigma-70, region 4 VCM66_0150 PF04542 Sigma-70 region 2 VCM66_0150 PF00140 Sigma-70 factor, region 1.2 VCM66_0151 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCM66_0151 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_0152 PF00440 Bacterial regulatory proteins, tetR family VCM66_0154 PF05958 tRNA (Uracil-5-)-methyltransferase VCM66_0155 PF07715 TonB-dependent Receptor Plug Domain VCM66_0155 PF00593 TonB dependent receptor VCM66_0156 PF04151 Bacterial pre-peptidase C-terminal domain VCM66_0156 PF00082 Subtilase family VCM66_0156 PF05922 Peptidase inhibitor I9 VCM66_0157 PF01177 Asp/Glu/Hydantoin racemase VCM66_0160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0160 PF03466 LysR substrate binding domain VCM66_0161 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VCM66_0161 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VCM66_0162 PF04380 Membrane fusogenic activity VCM66_0163 PF00873 AcrB/AcrD/AcrF family VCM66_0164 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCM66_0165 PF00440 Bacterial regulatory proteins, tetR family VCM66_0166 PF13361 UvrD-like helicase C-terminal domain VCM66_0166 PF00580 UvrD/REP helicase N-terminal domain VCM66_0167 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCM66_0169 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_0169 PF00005 ABC transporter VCM66_0170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCM66_0172 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0172 PF12911 N-terminal TM domain of oligopeptide transport permease C VCM66_0174 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCM66_0174 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_0175 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VCM66_0176 PF01432 Peptidase family M3 VCM66_0178 PF13361 UvrD-like helicase C-terminal domain VCM66_0178 PF00580 UvrD/REP helicase N-terminal domain VCM66_0179 PF01810 LysE type translocator VCM66_0180 PF12833 Helix-turn-helix domain VCM66_0183 PF00892 EamA-like transporter family VCM66_0184 PF16124 RecQ zinc-binding VCM66_0184 PF09382 RQC domain VCM66_0184 PF00270 DEAD/DEAH box helicase VCM66_0184 PF00570 HRDC domain VCM66_0184 PF00271 Helicase conserved C-terminal domain VCM66_0187 PF00664 ABC transporter transmembrane region VCM66_0187 PF00005 ABC transporter VCM66_0188 PF07715 TonB-dependent Receptor Plug Domain VCM66_0188 PF00593 TonB dependent receptor VCM66_0189 PF00005 ABC transporter VCM66_0190 PF01497 Periplasmic binding protein VCM66_0191 PF01032 FecCD transport family VCM66_0192 PF01418 Helix-turn-helix domain, rpiR family VCM66_0192 PF01380 SIS domain VCM66_0194 PF13580 SIS domain VCM66_0195 PF00367 phosphotransferase system, EIIB VCM66_0195 PF02378 Phosphotransferase system, EIIC VCM66_0196 PF03350 Uncharacterized protein family, UPF0114 VCM66_0197 PF08340 Domain of unknown function (DUF1732) VCM66_0197 PF03755 YicC-like family, N-terminal region VCM66_0198 PF01138 3' exoribonuclease family, domain 1 VCM66_0198 PF03725 3' exoribonuclease family, domain 2 VCM66_0199 PF00156 Phosphoribosyl transferase domain VCM66_0201 PF03279 Bacterial lipid A biosynthesis acyltransferase VCM66_0202 PF00440 Bacterial regulatory proteins, tetR family VCM66_0203 PF04127 DNA / pantothenate metabolism flavoprotein VCM66_0203 PF02441 Flavoprotein VCM66_0204 PF02743 Cache domain VCM66_0204 PF00672 HAMP domain VCM66_0204 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_0205 PF04002 RadC-like JAB domain VCM66_0206 PF00830 Ribosomal L28 family VCM66_0207 PF00471 Ribosomal protein L33 VCM66_0209 PF06827 Zinc finger found in FPG and IleRS VCM66_0209 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VCM66_0209 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VCM66_0210 PF01467 Cytidylyltransferase-like VCM66_0211 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCM66_0212 PF00535 Glycosyl transferase family 2 VCM66_0213 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCM66_0221 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VCM66_0222 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VCM66_0224 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCM66_0228 PF01370 NAD dependent epimerase/dehydratase family VCM66_0229 PF00483 Nucleotidyl transferase VCM66_0229 PF01050 Mannose-6-phosphate isomerase VCM66_0230 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCM66_0230 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCM66_0230 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCM66_0230 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCM66_0231 PF16363 GDP-mannose 4,6 dehydratase VCM66_0232 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VCM66_0235 PF14524 Wzt C-terminal domain VCM66_0235 PF00005 ABC transporter VCM66_0237 PF00501 AMP-binding enzyme VCM66_0237 PF13193 AMP-binding enzyme C-terminal domain VCM66_0238 PF00465 Iron-containing alcohol dehydrogenase VCM66_0238 PF00171 Aldehyde dehydrogenase family VCM66_0240 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_0245 PF02719 Polysaccharide biosynthesis protein VCM66_0247 PF01370 NAD dependent epimerase/dehydratase family VCM66_0248 PF02397 Bacterial sugar transferase VCM66_0249 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VCM66_0249 PF00753 Metallo-beta-lactamase superfamily VCM66_0249 PF10996 Beta-Casp domain VCM66_0250 PF00924 Mechanosensitive ion channel VCM66_0251 PF03167 Uracil DNA glycosylase superfamily VCM66_0252 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCM66_0253 PF04222 Protein of unknown function (DUF416) VCM66_0254 PF01238 Phosphomannose isomerase type I VCM66_0255 PF00480 ROK family VCM66_0256 PF01595 Cyclin M transmembrane N-terminal domain VCM66_0256 PF00571 CBS domain VCM66_0258 PF00216 Bacterial DNA-binding protein VCM66_0260 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VCM66_0260 PF02843 Phosphoribosylglycinamide synthetase, C domain VCM66_0260 PF02844 Phosphoribosylglycinamide synthetase, N domain VCM66_0261 PF01808 AICARFT/IMPCHase bienzyme VCM66_0261 PF02142 MGS-like domain VCM66_0262 PF13411 MerR HTH family regulatory protein VCM66_0263 PF00486 Transcriptional regulatory protein, C terminal VCM66_0263 PF18500 CadC C-terminal domain 1 VCM66_0265 PF13520 Amino acid permease VCM66_0266 PF01276 Orn/Lys/Arg decarboxylase, major domain VCM66_0266 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCM66_0266 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCM66_0267 PF00672 HAMP domain VCM66_0267 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_0267 PF17200 Single Cache domain 2 VCM66_0269 PF00593 TonB dependent receptor VCM66_0269 PF07715 TonB-dependent Receptor Plug Domain VCM66_0270 PF01081 KDPG and KHG aldolase VCM66_0271 PF02447 GntP family permease VCM66_0272 PF01202 Shikimate kinase VCM66_0273 PF00920 Dehydratase family VCM66_0274 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCM66_0274 PF00356 Bacterial regulatory proteins, lacI family VCM66_0275 PF02954 Bacterial regulatory protein, Fis family VCM66_0276 PF01207 Dihydrouridine synthase (Dus) VCM66_0280 PF00289 Biotin carboxylase, N-terminal domain VCM66_0280 PF02785 Biotin carboxylase C-terminal domain VCM66_0280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCM66_0281 PF00364 Biotin-requiring enzyme VCM66_0282 PF01220 Dehydroquinase class II VCM66_0283 PF16177 Acetyl-coenzyme A synthetase N-terminus VCM66_0283 PF00501 AMP-binding enzyme VCM66_0283 PF13193 AMP-binding enzyme C-terminal domain VCM66_0287 PF12832 MFS_1 like family VCM66_0288 PF00512 His Kinase A (phospho-acceptor) domain VCM66_0288 PF00072 Response regulator receiver domain VCM66_0288 PF09456 RcsC Alpha-Beta-Loop (ABL) VCM66_0288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_0289 PF02541 Ppx/GppA phosphatase family VCM66_0290 PF00270 DEAD/DEAH box helicase VCM66_0290 PF00271 Helicase conserved C-terminal domain VCM66_0291 PF00085 Thioredoxin VCM66_0292 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCM66_0292 PF07498 Rho termination factor, N-terminal domain VCM66_0292 PF07497 Rho termination factor, RNA-binding domain VCM66_0294 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VCM66_0295 PF00970 Oxidoreductase FAD-binding domain VCM66_0295 PF00111 2Fe-2S iron-sulfur cluster binding domain VCM66_0295 PF00175 Oxidoreductase NAD-binding domain VCM66_0296 PF00175 Oxidoreductase NAD-binding domain VCM66_0299 PF13091 PLD-like domain VCM66_0302 PF01565 FAD binding domain VCM66_0302 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VCM66_0303 PF02237 Biotin protein ligase C terminal domain VCM66_0303 PF03099 Biotin/lipoate A/B protein ligase family VCM66_0303 PF08279 HTH domain VCM66_0304 PF00485 Phosphoribulokinase / Uridine kinase family VCM66_0305 PF00009 Elongation factor Tu GTP binding domain VCM66_0305 PF03143 Elongation factor Tu C-terminal domain VCM66_0305 PF03144 Elongation factor Tu domain 2 VCM66_0306 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VCM66_0307 PF02357 Transcription termination factor nusG VCM66_0307 PF00467 KOW motif VCM66_0308 PF03946 Ribosomal protein L11, N-terminal domain VCM66_0308 PF00298 Ribosomal protein L11, RNA binding domain VCM66_0309 PF00687 Ribosomal protein L1p/L10e family VCM66_0310 PF00466 Ribosomal protein L10 VCM66_0311 PF16320 Ribosomal protein L7/L12 dimerisation domain VCM66_0311 PF00542 Ribosomal protein L7/L12 C-terminal domain VCM66_0312 PF04565 RNA polymerase Rpb2, domain 3 VCM66_0312 PF04563 RNA polymerase beta subunit VCM66_0312 PF04560 RNA polymerase Rpb2, domain 7 VCM66_0312 PF00562 RNA polymerase Rpb2, domain 6 VCM66_0312 PF10385 RNA polymerase beta subunit external 1 domain VCM66_0312 PF04561 RNA polymerase Rpb2, domain 2 VCM66_0313 PF04983 RNA polymerase Rpb1, domain 3 VCM66_0313 PF00623 RNA polymerase Rpb1, domain 2 VCM66_0313 PF04997 RNA polymerase Rpb1, domain 1 VCM66_0313 PF05000 RNA polymerase Rpb1, domain 4 VCM66_0313 PF04998 RNA polymerase Rpb1, domain 5 VCM66_0314 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VCM66_0315 PF00293 NUDIX domain VCM66_0315 PF09297 NADH pyrophosphatase zinc ribbon domain VCM66_0316 PF01208 Uroporphyrinogen decarboxylase (URO-D) VCM66_0317 PF08360 QacR-like protein, C-terminal region VCM66_0317 PF00440 Bacterial regulatory proteins, tetR family VCM66_0319 PF01551 Peptidase family M23 VCM66_0320 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VCM66_0320 PF01676 Metalloenzyme superfamily VCM66_0322 PF03600 Citrate transporter VCM66_0322 PF02080 TrkA-C domain VCM66_0323 PF02666 Phosphatidylserine decarboxylase VCM66_0324 PF03193 RsgA GTPase VCM66_0325 PF00929 Exonuclease VCM66_0326 PF08331 Domain of unknown function (DUF1730) VCM66_0327 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VCM66_0328 PF01520 N-acetylmuramoyl-L-alanine amidase VCM66_0329 PF01119 DNA mismatch repair protein, C-terminal domain VCM66_0329 PF08676 MutL C terminal dimerisation domain VCM66_0331 PF17209 Hfq protein VCM66_0332 PF16360 GTP-binding GTPase Middle Region VCM66_0332 PF13167 GTP-binding GTPase N-terminal VCM66_0332 PF01926 50S ribosome-binding GTPase VCM66_0333 PF12221 Bacterial membrane protein N terminal VCM66_0333 PF01145 SPFH domain / Band 7 family VCM66_0334 PF01145 SPFH domain / Band 7 family VCM66_0335 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VCM66_0336 PF04102 SlyX VCM66_0338 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCM66_0338 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCM66_0339 PF13309 HTH domain VCM66_0339 PF08348 YheO-like PAS domain VCM66_0340 PF02635 DsrE/DsrF-like family VCM66_0341 PF02635 DsrE/DsrF-like family VCM66_0343 PF00164 Ribosomal protein S12/S23 VCM66_0344 PF00177 Ribosomal protein S7p/S5e VCM66_0345 PF00679 Elongation factor G C-terminus VCM66_0345 PF03144 Elongation factor Tu domain 2 VCM66_0345 PF00009 Elongation factor Tu GTP binding domain VCM66_0345 PF14492 Elongation Factor G, domain II VCM66_0345 PF03764 Elongation factor G, domain IV VCM66_0346 PF03144 Elongation factor Tu domain 2 VCM66_0346 PF03143 Elongation factor Tu C-terminal domain VCM66_0346 PF00009 Elongation factor Tu GTP binding domain VCM66_0348 PF04324 BFD-like [2Fe-2S] binding domain VCM66_0349 PF00210 Ferritin-like domain VCM66_0350 PF01250 Ribosomal protein S6 VCM66_0351 PF00436 Single-strand binding protein family VCM66_0352 PF01084 Ribosomal protein S18 VCM66_0353 PF01281 Ribosomal protein L9, N-terminal domain VCM66_0353 PF03948 Ribosomal protein L9, C-terminal domain VCM66_0355 PF03796 DnaB-like helicase C terminal domain VCM66_0355 PF00772 DnaB-like helicase N terminal domain VCM66_0356 PF00842 Alanine racemase, C-terminal domain VCM66_0356 PF01168 Alanine racemase, N-terminal domain VCM66_0357 PF01894 Uncharacterised protein family UPF0047 VCM66_0358 PF00342 Phosphoglucose isomerase VCM66_0360 PF12706 Beta-lactamase superfamily domain VCM66_0362 PF01475 Ferric uptake regulator family VCM66_0363 PF01207 Dihydrouridine synthase (Dus) VCM66_0365 PF09583 Phage shock protein G (Phageshock_PspG) VCM66_0369 PF00175 Oxidoreductase NAD-binding domain VCM66_0369 PF00258 Flavodoxin VCM66_0369 PF00667 FAD binding domain VCM66_0370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VCM66_0370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VCM66_0371 PF01507 Phosphoadenosine phosphosulfate reductase family VCM66_0374 PF00999 Sodium/hydrogen exchanger family VCM66_0375 PF02607 B12 binding domain VCM66_0375 PF00809 Pterin binding enzyme VCM66_0375 PF02574 Homocysteine S-methyltransferase VCM66_0375 PF02310 B12 binding domain VCM66_0375 PF02965 Vitamin B12 dependent methionine synthase, activation domain VCM66_0376 PF01842 ACT domain VCM66_0376 PF00696 Amino acid kinase family VCM66_0377 PF00266 Aminotransferase class-V VCM66_0379 PF00005 ABC transporter VCM66_0379 PF17755 UvrA DNA-binding domain VCM66_0379 PF17760 UvrA interaction domain VCM66_0380 PF00483 Nucleotidyl transferase VCM66_0381 PF00196 Bacterial regulatory proteins, luxR family VCM66_0382 PF00436 Single-strand binding protein family VCM66_0383 PF17157 Gammaproteobacterial periplasmic sensor domain VCM66_0383 PF00563 EAL domain VCM66_0383 PF00990 Diguanylate cyclase, GGDEF domain VCM66_0387 PF07660 Secretin and TonB N terminus short domain VCM66_0387 PF11741 AMIN domain VCM66_0387 PF03958 Bacterial type II/III secretion system short domain VCM66_0387 PF00263 Bacterial type II and III secretion system protein VCM66_0388 PF01471 Putative peptidoglycan binding domain VCM66_0388 PF13401 AAA domain VCM66_0390 PF00437 Type II/IV secretion system protein VCM66_0391 PF00482 Type II secretion system (T2SS), protein F VCM66_0394 PF00114 Pilin (bacterial filament) VCM66_0394 PF07963 Prokaryotic N-terminal methylation motif VCM66_0401 PF04085 rod shape-determining protein MreC VCM66_0402 PF04093 rod shape-determining protein MreD VCM66_0403 PF02545 Maf-like protein VCM66_0404 PF10150 Ribonuclease E/G family VCM66_0404 PF00575 S1 RNA binding domain VCM66_0405 PF13116 Protein of unknown function VCM66_0405 PF13502 AsmA-like C-terminal region VCM66_0406 PF00795 Carbon-nitrogen hydrolase VCM66_0407 PF01523 Putative modulator of DNA gyrase VCM66_0409 PF06877 Regulator of ribonuclease activity B VCM66_0413 PF00582 Universal stress protein family VCM66_0415 PF16868 NMT1-like family VCM66_0416 PF01316 Arginine repressor, DNA binding domain VCM66_0416 PF02863 Arginine repressor, C-terminal domain VCM66_0417 PF00056 lactate/malate dehydrogenase, NAD binding domain VCM66_0417 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VCM66_0418 PF13520 Amino acid permease VCM66_0419 PF00348 Polyprenyl synthetase VCM66_0420 PF00829 Ribosomal prokaryotic L21 protein VCM66_0421 PF01016 Ribosomal L27 protein VCM66_0422 PF01926 50S ribosome-binding GTPase VCM66_0422 PF01018 GTP1/OBG VCM66_0423 PF06738 Putative threonine/serine exporter VCM66_0424 PF12821 Threonine/Serine exporter, ThrE VCM66_0425 PF00186 Dihydrofolate reductase VCM66_0426 PF00149 Calcineurin-like phosphoesterase VCM66_0427 PF04379 ApaG domain VCM66_0428 PF00398 Ribosomal RNA adenine dimethylase VCM66_0429 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VCM66_0430 PF09312 SurA N-terminal domain VCM66_0431 PF04453 LPS transport system D VCM66_0431 PF03968 OstA-like protein VCM66_0432 PF05099 Tellurite resistance protein TerB VCM66_0432 PF00226 DnaJ domain VCM66_0434 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_0434 PF00672 HAMP domain VCM66_0434 PF12729 Four helix bundle sensory module for signal transduction VCM66_0435 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VCM66_0435 PF01464 Transglycosylase SLT domain VCM66_0436 PF04362 Bacterial Fe(2+) trafficking VCM66_0437 PF14815 NUDIX domain VCM66_0437 PF00633 Helix-hairpin-helix motif VCM66_0437 PF00730 HhH-GPD superfamily base excision DNA repair protein VCM66_0437 PF10576 Iron-sulfur binding domain of endonuclease III VCM66_0438 PF02390 Putative methyltransferase VCM66_0439 PF04960 Glutaminase VCM66_0440 PF06969 HemN C-terminal domain VCM66_0440 PF04055 Radical SAM superfamily VCM66_0441 PF01725 Ham1 family VCM66_0443 PF02594 Uncharacterised ACR, YggU family COG1872 VCM66_0444 PF02325 YGGT family VCM66_0445 PF14748 Pyrroline-5-carboxylate reductase dimerisation VCM66_0445 PF03807 NADP oxidoreductase coenzyme F420-dependent VCM66_0446 PF01168 Alanine racemase, N-terminal domain VCM66_0447 PF00437 Type II/IV secretion system protein VCM66_0448 PF00437 Type II/IV secretion system protein VCM66_0450 PF00579 tRNA synthetases class I (W and Y) VCM66_0450 PF01479 S4 domain VCM66_0451 PF03652 Holliday junction resolvase VCM66_0452 PF02622 Uncharacterized ACR, COG1678 VCM66_0453 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VCM66_0453 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VCM66_0454 PF04452 RNA methyltransferase VCM66_0455 PF04231 Endonuclease I VCM66_0456 PF10263 SprT-like family VCM66_0456 PF17283 SprT-like zinc ribbon domain VCM66_0457 PF00438 S-adenosylmethionine synthetase, N-terminal domain VCM66_0457 PF02773 S-adenosylmethionine synthetase, C-terminal domain VCM66_0457 PF02772 S-adenosylmethionine synthetase, central domain VCM66_0458 PF00456 Transketolase, thiamine diphosphate binding domain VCM66_0458 PF02780 Transketolase, C-terminal domain VCM66_0458 PF02779 Transketolase, pyrimidine binding domain VCM66_0459 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0459 PF03466 LysR substrate binding domain VCM66_0460 PF00593 TonB dependent receptor VCM66_0460 PF07715 TonB-dependent Receptor Plug Domain VCM66_0461 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCM66_0461 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCM66_0462 PF00162 Phosphoglycerate kinase VCM66_0463 PF01116 Fructose-bisphosphate aldolase class-II VCM66_0465 PF00924 Mechanosensitive ion channel VCM66_0465 PF05552 Conserved TM helix VCM66_0466 PF01810 LysE type translocator VCM66_0467 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0467 PF03466 LysR substrate binding domain VCM66_0468 PF04402 Protein of unknown function (DUF541) VCM66_0470 PF02887 Pyruvate kinase, alpha/beta domain VCM66_0470 PF00224 Pyruvate kinase, barrel domain VCM66_0471 PF08220 DeoR-like helix-turn-helix domain VCM66_0471 PF00455 DeoR C terminal sensor domain VCM66_0472 PF01380 SIS domain VCM66_0473 PF03480 Bacterial extracellular solute-binding protein, family 7 VCM66_0475 PF04545 Sigma-70, region 4 VCM66_0475 PF04539 Sigma-70 region 3 VCM66_0475 PF04542 Sigma-70 region 2 VCM66_0475 PF00140 Sigma-70 factor, region 1.2 VCM66_0475 PF03979 Sigma-70 factor, region 1.1 VCM66_0475 PF04546 Sigma-70, non-essential region VCM66_0476 PF08275 DNA primase catalytic core, N-terminal domain VCM66_0476 PF08278 DNA primase DnaG DnaB-binding VCM66_0476 PF10410 DnaB-helicase binding domain of primase VCM66_0476 PF01807 CHC2 zinc finger VCM66_0477 PF09424 Yqey-like protein VCM66_0478 PF01165 Ribosomal protein S21 VCM66_0479 PF00814 Glycoprotease family VCM66_0480 PF00561 alpha/beta hydrolase fold VCM66_0481 PF02660 Glycerol-3-phosphate acyltransferase VCM66_0482 PF02152 Dihydroneopterin aldolase VCM66_0483 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCM66_0484 PF02673 Bacitracin resistance protein BacA VCM66_0485 PF04977 Septum formation initiator VCM66_0486 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VCM66_0487 PF02542 YgbB family VCM66_0488 PF01142 tRNA pseudouridine synthase D (TruD) VCM66_0489 PF01975 Survival protein SurE VCM66_0491 PF01551 Peptidase family M23 VCM66_0491 PF01476 LysM domain VCM66_0492 PF00140 Sigma-70 factor, region 1.2 VCM66_0492 PF04539 Sigma-70 region 3 VCM66_0492 PF04542 Sigma-70 region 2 VCM66_0492 PF04545 Sigma-70, region 4 VCM66_0493 PF01624 MutS domain I VCM66_0493 PF05188 MutS domain II VCM66_0493 PF05192 MutS domain III VCM66_0493 PF05190 MutS family domain IV VCM66_0493 PF00488 MutS domain V VCM66_0495 PF00291 Pyridoxal-phosphate dependent enzyme VCM66_0497 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0498 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0499 PF00005 ABC transporter VCM66_0499 PF12857 TOBE-like domain VCM66_0500 PF02464 Competence-damaged protein VCM66_0501 PF00154 recA bacterial DNA recombination protein VCM66_0502 PF02631 RecX family VCM66_0503 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VCM66_0503 PF02272 DHHA1 domain VCM66_0503 PF01411 tRNA synthetases class II (A) VCM66_0505 PF13840 ACT domain VCM66_0505 PF01842 ACT domain VCM66_0505 PF00696 Amino acid kinase family VCM66_0506 PF02599 Global regulator protein family VCM66_0507 PF04277 Oxaloacetate decarboxylase, gamma chain VCM66_0508 PF00364 Biotin-requiring enzyme VCM66_0508 PF02436 Conserved carboxylase domain VCM66_0508 PF00682 HMGL-like VCM66_0509 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCM66_0511 PF09335 SNARE associated Golgi protein VCM66_0512 PF00675 Insulinase (Peptidase family M16) VCM66_0512 PF05193 Peptidase M16 inactive domain VCM66_0514 PF04262 Glutamate-cysteine ligase VCM66_0515 PF02664 S-Ribosylhomocysteinase (LuxS) VCM66_0516 PF00571 CBS domain VCM66_0516 PF03471 Transporter associated domain VCM66_0516 PF01595 Cyclin M transmembrane N-terminal domain VCM66_0517 PF01578 Cytochrome C assembly protein VCM66_0518 PF00448 SRP54-type protein, GTPase domain VCM66_0518 PF02881 SRP54-type protein, helical bundle domain VCM66_0518 PF02978 Signal peptide binding domain VCM66_0519 PF00886 Ribosomal protein S16 VCM66_0520 PF05239 PRC-barrel domain VCM66_0520 PF01782 RimM N-terminal domain VCM66_0521 PF01746 tRNA (Guanine-1)-methyltransferase VCM66_0522 PF01245 Ribosomal protein L19 VCM66_0523 PF13180 PDZ domain VCM66_0524 PF00595 PDZ domain VCM66_0526 PF03969 AFG1-like ATPase VCM66_0528 PF00572 Ribosomal protein L13 VCM66_0529 PF00380 Ribosomal protein S9/S16 VCM66_0531 PF00355 Rieske [2Fe-2S] domain VCM66_0531 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VCM66_0532 PF00033 Cytochrome b/b6/petB VCM66_0532 PF00032 Cytochrome b(C-terminal)/b6/petD VCM66_0533 PF02167 Cytochrome C1 family VCM66_0534 PF00043 Glutathione S-transferase, C-terminal domain VCM66_0534 PF02798 Glutathione S-transferase, N-terminal domain VCM66_0535 PF04386 Stringent starvation protein B VCM66_0536 PF04972 BON domain VCM66_0537 PF13580 SIS domain VCM66_0538 PF02021 Uncharacterised protein family UPF0102 VCM66_0539 PF04348 LppC putative lipoprotein VCM66_0540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCM66_0541 PF00440 Bacterial regulatory proteins, tetR family VCM66_0543 PF00156 Phosphoribosyl transferase domain VCM66_0544 PF00484 Carbonic anhydrase VCM66_0545 PF01740 STAS domain VCM66_0545 PF00916 Sulfate permease family VCM66_0547 PF00005 ABC transporter VCM66_0548 PF01061 ABC-2 type transporter VCM66_0549 PF02569 Pantoate-beta-alanine ligase VCM66_0550 PF02548 Ketopantoate hydroxymethyltransferase VCM66_0551 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCM66_0552 PF01743 Poly A polymerase head domain VCM66_0552 PF12627 Probable RNA and SrmB- binding site of polymerase A VCM66_0552 PF12626 Polymerase A arginine-rich C-terminus VCM66_0553 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCM66_0554 PF01258 Prokaryotic dksA/traR C4-type zinc finger VCM66_0555 PF17746 SfsA N-terminal OB domain VCM66_0555 PF03749 Sugar fermentation stimulation protein RE domain VCM66_0560 PF14814 Bifunctional transglycosylase second domain VCM66_0560 PF00905 Penicillin binding protein transpeptidase domain VCM66_0560 PF00912 Transglycosylase VCM66_0561 PF01734 Patatin-like phospholipase VCM66_0562 PF06434 Aconitate hydratase 2 N-terminus VCM66_0562 PF00330 Aconitase family (aconitate hydratase) VCM66_0562 PF11791 Aconitate B N-terminal domain VCM66_0563 PF06062 Uncharacterised protein family (UPF0231) VCM66_0564 PF00543 Nitrogen regulatory protein P-II VCM66_0565 PF00909 Ammonium Transporter Family VCM66_0566 PF13416 Bacterial extracellular solute-binding protein VCM66_0568 PF00005 ABC transporter VCM66_0568 PF08402 TOBE domain VCM66_0569 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCM66_0569 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCM66_0569 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCM66_0569 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCM66_0570 PF06165 Glycosyltransferase family 36 VCM66_0570 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VCM66_0571 PF00728 Glycosyl hydrolase family 20, catalytic domain VCM66_0571 PF02838 Glycosyl hydrolase family 20, domain 2 VCM66_0572 PF01869 BadF/BadG/BcrA/BcrD ATPase family VCM66_0574 PF00005 ABC transporter VCM66_0574 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_0575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_0575 PF00005 ABC transporter VCM66_0576 PF12911 N-terminal TM domain of oligopeptide transport permease C VCM66_0576 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0577 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0578 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCM66_0580 PF00512 His Kinase A (phospho-acceptor) domain VCM66_0580 PF00072 Response regulator receiver domain VCM66_0580 PF09308 LuxQ, periplasmic VCM66_0580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_0581 PF05175 Methyltransferase small domain VCM66_0581 PF08468 Methyltransferase small domain N-terminal VCM66_0582 PF01594 AI-2E family transporter VCM66_0584 PF00202 Aminotransferase class-III VCM66_0585 PF01521 Iron-sulphur cluster biosynthesis VCM66_0587 PF00873 AcrB/AcrD/AcrF family VCM66_0588 PF01551 Peptidase family M23 VCM66_0588 PF04225 Opacity-associated protein A LysM-like domain VCM66_0589 PF00579 tRNA synthetases class I (W and Y) VCM66_0589 PF01479 S4 domain VCM66_0590 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VCM66_0591 PF13609 Gram-negative porin VCM66_0592 PF03449 Transcription elongation factor, N-terminal VCM66_0592 PF01272 Transcription elongation factor, GreA/GreB, C-term VCM66_0593 PF01985 CRS1 / YhbY (CRM) domain VCM66_0594 PF01728 FtsJ-like methyltransferase VCM66_0595 PF00004 ATPase family associated with various cellular activities (AAA) VCM66_0595 PF06480 FtsH Extracellular VCM66_0595 PF17862 AAA+ lid domain VCM66_0595 PF01434 Peptidase family M41 VCM66_0596 PF00809 Pterin binding enzyme VCM66_0597 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCM66_0597 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCM66_0597 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCM66_0597 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCM66_0598 PF03840 Preprotein translocase SecG subunit VCM66_0599 PF17384 RimP C-terminal SH3 domain VCM66_0599 PF02576 RimP N-terminal domain VCM66_0600 PF13184 NusA-like KH domain VCM66_0600 PF08529 NusA N-terminal domain VCM66_0600 PF00575 S1 RNA binding domain VCM66_0601 PF04760 Translation initiation factor IF-2, N-terminal region VCM66_0601 PF08364 Bacterial translation initiation factor IF-2 associated region VCM66_0601 PF11987 Translation-initiation factor 2 VCM66_0601 PF00009 Elongation factor Tu GTP binding domain VCM66_0602 PF02033 Ribosome-binding factor A VCM66_0603 PF16198 tRNA pseudouridylate synthase B C-terminal domain VCM66_0603 PF01509 TruB family pseudouridylate synthase (N terminal domain) VCM66_0603 PF09157 Pseudouridine synthase II TruB, C-terminal VCM66_0604 PF00312 Ribosomal protein S15 VCM66_0605 PF00575 S1 RNA binding domain VCM66_0605 PF03725 3' exoribonuclease family, domain 2 VCM66_0605 PF01138 3' exoribonuclease family, domain 1 VCM66_0605 PF00013 KH domain VCM66_0605 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VCM66_0606 PF13181 Tetratricopeptide repeat VCM66_0606 PF07719 Tetratricopeptide repeat VCM66_0611 PF00563 EAL domain VCM66_0611 PF00990 Diguanylate cyclase, GGDEF domain VCM66_0611 PF03707 Bacterial signalling protein N terminal repeat VCM66_0613 PF13508 Acetyltransferase (GNAT) domain VCM66_0616 PF00563 EAL domain VCM66_0616 PF00990 Diguanylate cyclase, GGDEF domain VCM66_0616 PF03707 Bacterial signalling protein N terminal repeat VCM66_0617 PF00009 Elongation factor Tu GTP binding domain VCM66_0617 PF03144 Elongation factor Tu domain 2 VCM66_0617 PF16658 Class II release factor RF3, C-terminal domain VCM66_0618 PF00270 DEAD/DEAH box helicase VCM66_0618 PF00271 Helicase conserved C-terminal domain VCM66_0619 PF05175 Methyltransferase small domain VCM66_0620 PF05525 Branched-chain amino acid transport protein VCM66_0621 PF00472 RF-1 domain VCM66_0621 PF03462 PCRF domain VCM66_0622 PF01336 OB-fold nucleic acid binding domain VCM66_0622 PF00152 tRNA synthetases class II (D, K and N) VCM66_0623 PF00072 Response regulator receiver domain VCM66_0623 PF00158 Sigma-54 interaction domain VCM66_0623 PF02954 Bacterial regulatory protein, Fis family VCM66_0625 PF00248 Aldo/keto reductase family VCM66_0626 PF02976 DNA mismatch repair enzyme MutH VCM66_0629 PF00293 NUDIX domain VCM66_0630 PF02896 PEP-utilising enzyme, TIM barrel domain VCM66_0630 PF05524 PEP-utilising enzyme, N-terminal VCM66_0630 PF01590 GAF domain VCM66_0630 PF00391 PEP-utilising enzyme, mobile domain VCM66_0631 PF01925 Sulfite exporter TauE/SafE VCM66_0632 PF01790 Prolipoprotein diacylglyceryl transferase VCM66_0633 PF00303 Thymidylate synthase VCM66_0634 PF02690 Na+/Pi-cotransporter VCM66_0635 PF03466 LysR substrate binding domain VCM66_0635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0636 PF01022 Bacterial regulatory protein, arsR family VCM66_0637 PF01649 Ribosomal protein S20 VCM66_0638 PF03023 Lipid II flippase MurJ VCM66_0639 PF01687 Riboflavin kinase VCM66_0639 PF06574 FAD synthetase VCM66_0640 PF06827 Zinc finger found in FPG and IleRS VCM66_0640 PF08264 Anticodon-binding domain of tRNA VCM66_0640 PF00133 tRNA synthetases class I (I, L, M and V) VCM66_0641 PF01252 Signal peptidase (SPase) II VCM66_0642 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCM66_0643 PF02401 LytB protein VCM66_0645 PF02554 Carbon starvation protein CstA VCM66_0648 PF13580 SIS domain VCM66_0649 PF03702 Anhydro-N-acetylmuramic acid kinase VCM66_0650 PF00933 Glycosyl hydrolase family 3 N terminal domain VCM66_0651 PF00072 Response regulator receiver domain VCM66_0651 PF04397 LytTr DNA-binding domain VCM66_0652 PF07694 5TMR of 5TMR-LYT VCM66_0652 PF06580 Histidine kinase VCM66_0653 PF00793 DAHP synthetase I family VCM66_0654 PF02153 Prephenate dehydrogenase VCM66_0654 PF01817 Chorismate mutase type II VCM66_0655 PF07238 PilZ domain VCM66_0656 PF00005 ABC transporter VCM66_0656 PF12848 ABC transporter VCM66_0659 PF01371 Trp repressor protein VCM66_0660 PF01931 Protein of unknown function DUF84 VCM66_0661 PF00990 Diguanylate cyclase, GGDEF domain VCM66_0661 PF00563 EAL domain VCM66_0662 PF13416 Bacterial extracellular solute-binding protein VCM66_0663 PF00800 Prephenate dehydratase VCM66_0663 PF01817 Chorismate mutase type II VCM66_0664 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCM66_0666 PF13525 Outer membrane lipoprotein VCM66_0667 PF00849 RNA pseudouridylate synthase VCM66_0667 PF01479 S4 domain VCM66_0669 PF10431 C-terminal, D2-small domain, of ClpB protein VCM66_0669 PF02861 Clp amino terminal domain, pathogenicity island component VCM66_0669 PF00004 ATPase family associated with various cellular activities (AAA) VCM66_0669 PF07724 AAA domain (Cdc48 subfamily) VCM66_0669 PF17871 AAA lid domain VCM66_0673 PF00881 Nitroreductase family VCM66_0674 PF00037 4Fe-4S binding domain VCM66_0676 PF04381 Putative exonuclease, RdgC VCM66_0677 PF00486 Transcriptional regulatory protein, C terminal VCM66_0677 PF00072 Response regulator receiver domain VCM66_0678 PF11808 Phosphate regulon sensor protein PhoR VCM66_0678 PF00989 PAS fold VCM66_0678 PF00512 His Kinase A (phospho-acceptor) domain VCM66_0678 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_0679 PF12849 PBP superfamily domain VCM66_0680 PF02541 Ppx/GppA phosphatase family VCM66_0681 PF02503 Polyphosphate kinase middle domain VCM66_0681 PF13090 Polyphosphate kinase C-terminal domain 2 VCM66_0681 PF17941 Polyphosphate kinase C-terminal domain 1 VCM66_0681 PF13089 Polyphosphate kinase N-terminal domain VCM66_0682 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0683 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0684 PF00005 ABC transporter VCM66_0685 PF01895 PhoU domain VCM66_0686 PF03976 Polyphosphate kinase 2 (PPK2) VCM66_0688 PF03932 CutC family VCM66_0689 PF00578 AhpC/TSA family VCM66_0689 PF10417 C-terminal domain of 1-Cys peroxiredoxin VCM66_0690 PF03466 LysR substrate binding domain VCM66_0690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0692 PF01274 Malate synthase VCM66_0694 PF00463 Isocitrate lyase family VCM66_0695 PF00571 CBS domain VCM66_0697 PF02547 Queuosine biosynthesis protein VCM66_0699 PF01702 Queuine tRNA-ribosyltransferase VCM66_0700 PF02699 Preprotein translocase subunit VCM66_0701 PF07549 SecD/SecF GG Motif VCM66_0701 PF13721 SecD export protein N-terminal TM region VCM66_0701 PF02355 Protein export membrane protein VCM66_0702 PF07549 SecD/SecF GG Motif VCM66_0702 PF02355 Protein export membrane protein VCM66_0703 PF00459 Inositol monophosphatase family VCM66_0704 PF00588 SpoU rRNA Methylase family VCM66_0705 PF02082 Transcriptional regulator VCM66_0706 PF00266 Aminotransferase class-V VCM66_0707 PF01592 NifU-like N terminal domain VCM66_0708 PF01521 Iron-sulphur cluster biosynthesis VCM66_0709 PF00226 DnaJ domain VCM66_0709 PF07743 HSCB C-terminal oligomerisation domain VCM66_0710 PF00012 Hsp70 protein VCM66_0711 PF00111 2Fe-2S iron-sulfur cluster binding domain VCM66_0712 PF04384 Iron-sulphur cluster assembly VCM66_0713 PF12404 Peptidase VCM66_0713 PF00883 Cytosol aminopeptidase family, catalytic domain VCM66_0714 PF00334 Nucleoside diphosphate kinase VCM66_0715 PF04055 Radical SAM superfamily VCM66_0716 PF13464 Domain of unknown function (DUF4115) VCM66_0717 PF04551 GcpE protein VCM66_0718 PF13393 Histidyl-tRNA synthetase VCM66_0718 PF03129 Anticodon binding domain VCM66_0719 PF09976 Tetratricopeptide repeat-like domain VCM66_0720 PF13360 PQQ-like domain VCM66_0721 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VCM66_0721 PF01926 50S ribosome-binding GTPase VCM66_0724 PF02601 Exonuclease VII, large subunit VCM66_0724 PF13742 OB-fold nucleic acid binding domain VCM66_0725 PF00571 CBS domain VCM66_0725 PF00478 IMP dehydrogenase / GMP reductase domain VCM66_0726 PF02540 NAD synthase VCM66_0726 PF00958 GMP synthase C terminal domain VCM66_0726 PF00117 Glutamine amidotransferase class-I VCM66_0727 PF00704 Glycosyl hydrolases family 18 VCM66_0727 PF06483 Chitinase C VCM66_0728 PF01184 GPR1/FUN34/yaaH family VCM66_0729 PF00550 Phosphopantetheine attachment site VCM66_0729 PF00857 Isochorismatase family VCM66_0730 PF13193 AMP-binding enzyme C-terminal domain VCM66_0730 PF00501 AMP-binding enzyme VCM66_0731 PF00425 chorismate binding enzyme VCM66_0734 PF01497 Periplasmic binding protein VCM66_0735 PF01032 FecCD transport family VCM66_0736 PF01032 FecCD transport family VCM66_0737 PF00005 ABC transporter VCM66_0738 PF01648 4'-phosphopantetheinyl transferase superfamily VCM66_0738 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VCM66_0739 PF03466 LysR substrate binding domain VCM66_0739 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0741 PF14864 Alkyl sulfatase C-terminal VCM66_0741 PF00753 Metallo-beta-lactamase superfamily VCM66_0741 PF14863 Alkyl sulfatase dimerisation VCM66_0742 PF01235 Sodium:alanine symporter family VCM66_0744 PF01266 FAD dependent oxidoreductase VCM66_0745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0745 PF03466 LysR substrate binding domain VCM66_0748 PF12431 Transcriptional regulator VCM66_0748 PF00072 Response regulator receiver domain VCM66_0749 PF17203 Single cache domain 3 VCM66_0749 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_0750 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCM66_0751 PF00364 Biotin-requiring enzyme VCM66_0751 PF00682 HMGL-like VCM66_0751 PF02436 Conserved carboxylase domain VCM66_0752 PF04277 Oxaloacetate decarboxylase, gamma chain VCM66_0753 PF03390 2-hydroxycarboxylate transporter family VCM66_0754 PF08218 Citrate lyase ligase C-terminal domain VCM66_0755 PF06857 Malonate decarboxylase delta subunit (MdcD) VCM66_0756 PF03328 HpcH/HpaI aldolase/citrate lyase family VCM66_0757 PF04223 Citrate lyase, alpha subunit (CitF) VCM66_0758 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VCM66_0759 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VCM66_0761 PF00588 SpoU rRNA Methylase family VCM66_0761 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCM66_0762 PF11953 Domain of unknown function (DUF3470) VCM66_0762 PF00037 4Fe-4S binding domain VCM66_0777 PF00171 Aldehyde dehydrogenase family VCM66_0778 PF00041 Fibronectin type III domain VCM66_0778 PF12561 ToxR activated gene A lipoprotein domain VCM66_0781 PF08534 Redoxin VCM66_0782 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_0783 PF00486 Transcriptional regulatory protein, C terminal VCM66_0785 PF05946 Toxin-coregulated pilus subunit TcpA VCM66_0785 PF07963 Prokaryotic N-terminal methylation motif VCM66_0787 PF10671 Toxin co-regulated pilus biosynthesis protein Q VCM66_0791 PF17456 Toxin-coregulated pilus protein S VCM66_0792 PF00437 Type II/IV secretion system protein VCM66_0793 PF00482 Type II secretion system (T2SS), protein F VCM66_0794 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F VCM66_0795 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family VCM66_0796 PF01478 Type IV leader peptidase family VCM66_0796 PF06750 Bacterial Peptidase A24 N-terminal domain VCM66_0797 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_0797 PF02743 Cache domain VCM66_0797 PF00672 HAMP domain VCM66_0800 PF01551 Peptidase family M23 VCM66_0800 PF04225 Opacity-associated protein A LysM-like domain VCM66_0802 PF13322 Domain of unknown function (DUF4092) VCM66_0802 PF17291 N-terminal domain of M60-like peptidases VCM66_0802 PF13402 Peptidase M60, enhancin and enhancin-like VCM66_0804 PF13356 Arm DNA-binding domain VCM66_0804 PF00589 Phage integrase family VCM66_0805 PF01668 SmpB protein VCM66_0806 PF03364 Polyketide cyclase / dehydrase and lipid transport VCM66_0807 PF03658 RnfH family Ubiquitin VCM66_0808 PF04355 SmpA / OmlA family VCM66_0809 PF02463 RecF/RecN/SMC N terminal domain VCM66_0810 PF01513 ATP-NAD kinase VCM66_0811 PF01025 GrpE VCM66_0812 PF00012 Hsp70 protein VCM66_0813 PF00684 DnaJ central domain VCM66_0813 PF01556 DnaJ C terminal domain VCM66_0813 PF00226 DnaJ domain VCM66_0814 PF00114 Pilin (bacterial filament) VCM66_0814 PF07963 Prokaryotic N-terminal methylation motif VCM66_0815 PF07963 Prokaryotic N-terminal methylation motif VCM66_0815 PF14245 Type IV pilin PilA VCM66_0820 PF03806 AbgT putative transporter family VCM66_0821 PF14437 MafB19-like deaminase VCM66_0823 PF01464 Transglycosylase SLT domain VCM66_0823 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_0826 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VCM66_0826 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VCM66_0826 PF02769 AIR synthase related protein, C-terminal domain VCM66_0827 PF01797 Transposase IS200 like VCM66_0829 PF06786 Uncharacterised protein family (UPF0253) VCM66_0832 PF04073 Aminoacyl-tRNA editing domain VCM66_0832 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCM66_0832 PF03129 Anticodon binding domain VCM66_0833 PF01980 tRNA-methyltransferase O VCM66_0833 PF18389 TrmO C-terminal domain VCM66_0835 PF01197 Ribosomal protein L31 VCM66_0836 PF00444 Ribosomal protein L36 VCM66_0837 PF03806 AbgT putative transporter family VCM66_0838 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VCM66_0841 PF13302 Acetyltransferase (GNAT) domain VCM66_0844 PF04287 tRNA pseudouridine synthase C VCM66_0845 PF00849 RNA pseudouridylate synthase VCM66_0846 PF02779 Transketolase, pyrimidine binding domain VCM66_0846 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VCM66_0846 PF02780 Transketolase, C-terminal domain VCM66_0847 PF00348 Polyprenyl synthetase VCM66_0848 PF02609 Exonuclease VII small subunit VCM66_0849 PF01618 MotA/TolQ/ExbB proton channel family VCM66_0850 PF00691 OmpA family VCM66_0850 PF13677 Membrane MotB of proton-channel complex MotA/MotB VCM66_0851 PF02926 THUMP domain VCM66_0851 PF02568 Thiamine biosynthesis protein (ThiI) VCM66_0853 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_0853 PF03466 LysR substrate binding domain VCM66_0854 PF04241 Protein of unknown function (DUF423) VCM66_0855 PF01367 5'-3' exonuclease, C-terminal SAM fold VCM66_0855 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCM66_0856 PF03641 Possible lysine decarboxylase VCM66_0856 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VCM66_0856 PF11892 Domain of unknown function (DUF3412) VCM66_0857 PF00990 Diguanylate cyclase, GGDEF domain VCM66_0859 PF14489 QueF-like protein VCM66_0859 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VCM66_0860 PF07348 Syd protein (SUKH-2) VCM66_0861 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VCM66_0862 PF03180 NLPA lipoprotein VCM66_0863 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_0864 PF00005 ABC transporter VCM66_0864 PF09383 NIL domain VCM66_0866 PF00356 Bacterial regulatory proteins, lacI family VCM66_0867 PF02378 Phosphotransferase system, EIIC VCM66_0867 PF00367 phosphotransferase system, EIIB VCM66_0868 PF00128 Alpha amylase, catalytic domain VCM66_0868 PF16657 Maltogenic Amylase, C-terminal domain VCM66_0870 PF13533 Biotin-lipoyl like VCM66_0871 PF00873 AcrB/AcrD/AcrF family VCM66_0873 PF01451 Low molecular weight phosphotyrosine protein phosphatase VCM66_0874 PF02350 UDP-N-acetylglucosamine 2-epimerase VCM66_0875 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VCM66_0875 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VCM66_0875 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VCM66_0876 PF14602 Hexapeptide repeat of succinyl-transferase VCM66_0876 PF12464 Maltose acetyltransferase VCM66_0880 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_0882 PF00534 Glycosyl transferases group 1 VCM66_0882 PF00862 Sucrose synthase VCM66_0884 PF03808 Glycosyl transferase WecB/TagA/CpsF family VCM66_0887 PF12561 ToxR activated gene A lipoprotein domain VCM66_0887 PF17945 Beta/Gamma crystallin VCM66_0890 PF02397 Bacterial sugar transferase VCM66_0892 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VCM66_0892 PF10531 SLBB domain VCM66_0892 PF02563 Polysaccharide biosynthesis/export protein VCM66_0893 PF02706 Chain length determinant protein VCM66_0893 PF13614 AAA domain VCM66_0893 PF13807 G-rich domain on putative tyrosine kinase VCM66_0897 PF00464 Serine hydroxymethyltransferase VCM66_0899 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VCM66_0899 PF04055 Radical SAM superfamily VCM66_0900 PF03099 Biotin/lipoate A/B protein ligase family VCM66_0901 PF04359 Protein of unknown function (DUF493) VCM66_0903 PF00768 D-alanyl-D-alanine carboxypeptidase VCM66_0903 PF07943 Penicillin-binding protein 5, C-terminal domain VCM66_0904 PF05036 Sporulation related domain VCM66_0904 PF03330 Lytic transglycolase VCM66_0905 PF01098 Cell cycle protein VCM66_0906 PF00905 Penicillin binding protein transpeptidase domain VCM66_0906 PF03717 Penicillin-binding Protein dimerisation domain VCM66_0907 PF02590 Predicted SPOUT methyltransferase VCM66_0909 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VCM66_0909 PF06144 DNA polymerase III, delta subunit VCM66_0910 PF04390 Lipopolysaccharide-assembly VCM66_0912 PF00133 tRNA synthetases class I (I, L, M and V) VCM66_0912 PF08264 Anticodon-binding domain of tRNA VCM66_0912 PF13603 Leucyl-tRNA synthetase, Domain 2 VCM66_0913 PF07295 Zinc-ribbon containing domain VCM66_0914 PF00795 Carbon-nitrogen hydrolase VCM66_0915 PF03471 Transporter associated domain VCM66_0915 PF00571 CBS domain VCM66_0916 PF02130 Uncharacterized protein family UPF0054 VCM66_0917 PF02562 PhoH-like protein VCM66_0918 PF04055 Radical SAM superfamily VCM66_0918 PF01938 TRAM domain VCM66_0918 PF00919 Uncharacterized protein family UPF0004 VCM66_0919 PF01494 FAD binding domain VCM66_0920 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCM66_0921 PF02896 PEP-utilising enzyme, TIM barrel domain VCM66_0921 PF00391 PEP-utilising enzyme, mobile domain VCM66_0921 PF05524 PEP-utilising enzyme, N-terminal VCM66_0922 PF00381 PTS HPr component phosphorylation site VCM66_0924 PF00291 Pyridoxal-phosphate dependent enzyme VCM66_0926 PF04354 ZipA, C-terminal FtsZ-binding domain VCM66_0927 PF00533 BRCA1 C Terminus (BRCT) domain VCM66_0927 PF03120 NAD-dependent DNA ligase OB-fold domain VCM66_0927 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VCM66_0927 PF12826 Helix-hairpin-helix motif VCM66_0927 PF01653 NAD-dependent DNA ligase adenylation domain VCM66_0928 PF13609 Gram-negative porin VCM66_0930 PF13411 MerR HTH family regulatory protein VCM66_0931 PF01957 NfeD-like C-terminal, partner-binding VCM66_0932 PF16200 C-terminal region of band_7 VCM66_0932 PF01145 SPFH domain / Band 7 family VCM66_0933 PF00085 Thioredoxin VCM66_0935 PF00106 short chain dehydrogenase VCM66_0936 PF01370 NAD dependent epimerase/dehydratase family VCM66_0936 PF08338 Domain of unknown function (DUF1731) VCM66_0937 PF12850 Calcineurin-like phosphoesterase superfamily domain VCM66_0939 PF17323 Trans-membrane regulatory protein ToxS VCM66_0940 PF00486 Transcriptional regulatory protein, C terminal VCM66_0941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_0941 PF00183 Hsp90 protein VCM66_0942 PF05191 Adenylate kinase, active site lid VCM66_0943 PF00762 Ferrochelatase VCM66_0944 PF00854 POT family VCM66_0946 PF02357 Transcription termination factor nusG VCM66_0947 PF00733 Asparagine synthase VCM66_0947 PF13537 Glutamine amidotransferase domain VCM66_0948 PF00999 Sodium/hydrogen exchanger family VCM66_0948 PF02254 TrkA-N domain VCM66_0949 PF00480 ROK family VCM66_0949 PF01047 MarR family VCM66_0950 PF01979 Amidohydrolase family VCM66_0951 PF00367 phosphotransferase system, EIIB VCM66_0951 PF02378 Phosphotransferase system, EIIC VCM66_0951 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCM66_0953 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCM66_0953 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VCM66_0955 PF01416 tRNA pseudouridine synthase VCM66_0956 PF01039 Carboxyl transferase domain VCM66_0956 PF17848 Acetyl-coA carboxylase zinc finger domain VCM66_0957 PF02875 Mur ligase family, glutamate ligase domain VCM66_0957 PF08245 Mur ligase middle domain VCM66_0958 PF05036 Sporulation related domain VCM66_0959 PF02674 Colicin V production protein VCM66_0960 PF00156 Phosphoribosyl transferase domain VCM66_0961 PF13726 Na+-H+ antiporter family VCM66_0961 PF03553 Na+/H+ antiporter family VCM66_0962 PF00929 Exonuclease VCM66_0964 PF18393 MotY N-terminal domain VCM66_0964 PF00691 OmpA family VCM66_0965 PF10952 Protein of unknown function (DUF2753) VCM66_0966 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCM66_0967 PF00633 Helix-hairpin-helix motif VCM66_0967 PF00730 HhH-GPD superfamily base excision DNA repair protein VCM66_0967 PF10576 Iron-sulfur binding domain of endonuclease III VCM66_0968 PF02508 Rnf-Nqr subunit, membrane protein VCM66_0969 PF04205 FMN-binding domain VCM66_0970 PF03116 NQR2, RnfD, RnfE family VCM66_0971 PF13375 RnfC Barrel sandwich hybrid domain VCM66_0971 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VCM66_0971 PF12838 4Fe-4S dicluster domain VCM66_0971 PF10531 SLBB domain VCM66_0972 PF04060 Putative Fe-S cluster VCM66_0973 PF02508 Rnf-Nqr subunit, membrane protein VCM66_0974 PF02151 UvrB/uvrC motif VCM66_0974 PF17757 UvrB interaction domain VCM66_0974 PF00271 Helicase conserved C-terminal domain VCM66_0974 PF04851 Type III restriction enzyme, res subunit VCM66_0974 PF12344 Ultra-violet resistance protein B VCM66_0976 PF02954 Bacterial regulatory protein, Fis family VCM66_0976 PF00072 Response regulator receiver domain VCM66_0976 PF00158 Sigma-54 interaction domain VCM66_0977 PF01627 Hpt domain VCM66_0978 PF01933 Uncharacterised protein family UPF0052 VCM66_0979 PF04055 Radical SAM superfamily VCM66_0979 PF06463 Molybdenum Cofactor Synthesis C VCM66_0980 PF00994 Probable molybdopterin binding domain VCM66_0981 PF01967 MoaC family VCM66_0982 PF02597 ThiS family VCM66_0983 PF02391 MoaE protein VCM66_0984 PF00990 Diguanylate cyclase, GGDEF domain VCM66_0984 PF07694 5TMR of 5TMR-LYT VCM66_0986 PF03061 Thioesterase superfamily VCM66_0986 PF00571 CBS domain VCM66_0986 PF07085 DRTGG domain VCM66_0986 PF00392 Bacterial regulatory proteins, gntR family VCM66_0988 PF00403 Heavy-metal-associated domain VCM66_0989 PF01048 Phosphorylase superfamily VCM66_0991 PF09334 tRNA synthetases class I (M) VCM66_0991 PF01588 Putative tRNA binding domain VCM66_0992 PF10609 NUBPL iron-transfer P-loop NTPase VCM66_0993 PF00485 Phosphoribulokinase / Uridine kinase family VCM66_0994 PF05170 AsmA family VCM66_0995 PF12557 Cob(I)alamin adenosyltransferase N terminal VCM66_0995 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VCM66_0996 PF01451 Low molecular weight phosphotyrosine protein phosphatase VCM66_0997 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCM66_0998 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCM66_1000 PF04542 Sigma-70 region 2 VCM66_1000 PF08281 Sigma-70, region 4 VCM66_1001 PF02803 Thiolase, C-terminal domain VCM66_1001 PF00108 Thiolase, N-terminal domain VCM66_1002 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCM66_1002 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCM66_1002 PF00378 Enoyl-CoA hydratase/isomerase VCM66_1003 PF00881 Nitroreductase family VCM66_1004 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1004 PF03466 LysR substrate binding domain VCM66_1005 PF00072 Response regulator receiver domain VCM66_1007 PF04304 Protein of unknown function (DUF454) VCM66_1008 PF00156 Phosphoribosyl transferase domain VCM66_1009 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VCM66_1009 PF12170 DNA polymerase III tau subunit V interacting with alpha VCM66_1009 PF12169 DNA polymerase III subunits gamma and tau domain III VCM66_1010 PF02575 YbaB/EbfC DNA-binding family VCM66_1011 PF13662 Toprim domain VCM66_1011 PF02132 RecR protein VCM66_1012 PF03692 Putative zinc- or iron-chelating domain VCM66_1013 PF03692 Putative zinc- or iron-chelating domain VCM66_1014 PF00106 short chain dehydrogenase VCM66_1015 PF08496 Peptidase family S49 N-terminal VCM66_1015 PF01343 Peptidase family S49 VCM66_1016 PF00291 Pyridoxal-phosphate dependent enzyme VCM66_1017 PF13404 AsnC-type helix-turn-helix domain VCM66_1017 PF01037 Lrp/AsnC ligand binding domain VCM66_1020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VCM66_1022 PF08448 PAS fold VCM66_1022 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1024 PF01022 Bacterial regulatory protein, arsR family VCM66_1025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCM66_1025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCM66_1029 PF06483 Chitinase C VCM66_1029 PF00704 Glycosyl hydrolases family 18 VCM66_1031 PF01161 Phosphatidylethanolamine-binding protein VCM66_1035 PF01300 Telomere recombination VCM66_1035 PF03481 Putative GTP-binding controlling metal-binding VCM66_1038 PF00072 Response regulator receiver domain VCM66_1040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1040 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1040 PF00989 PAS fold VCM66_1040 PF13188 PAS domain VCM66_1040 PF13426 PAS domain VCM66_1042 PF13188 PAS domain VCM66_1042 PF03707 Bacterial signalling protein N terminal repeat VCM66_1042 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1042 PF00563 EAL domain VCM66_1043 PF00158 Sigma-54 interaction domain VCM66_1043 PF00072 Response regulator receiver domain VCM66_1043 PF02954 Bacterial regulatory protein, Fis family VCM66_1044 PF00072 Response regulator receiver domain VCM66_1044 PF13188 PAS domain VCM66_1044 PF08448 PAS fold VCM66_1044 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1044 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1047 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCM66_1048 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1049 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1049 PF12911 N-terminal TM domain of oligopeptide transport permease C VCM66_1050 PF00005 ABC transporter VCM66_1050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_1051 PF00005 ABC transporter VCM66_1051 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_1052 PF13409 Glutathione S-transferase, N-terminal domain VCM66_1053 PF07085 DRTGG domain VCM66_1053 PF01515 Phosphate acetyl/butaryl transferase VCM66_1054 PF00871 Acetokinase family VCM66_1055 PF04217 Protein of unknown function, DUF412 VCM66_1056 PF09905 DNA-binding protein VF530 VCM66_1058 PF02653 Branched-chain amino acid transport system / permease component VCM66_1059 PF00005 ABC transporter VCM66_1060 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1061 PF01207 Dihydrouridine synthase (Dus) VCM66_1062 PF07516 SecA Wing and Scaffold domain VCM66_1062 PF02810 SEC-C motif VCM66_1062 PF01043 SecA preprotein cross-linking domain VCM66_1062 PF07517 SecA DEAD-like domain VCM66_1063 PF03548 Outer membrane lipoprotein carrier protein LolA VCM66_1064 PF12002 MgsA AAA+ ATPase C terminal VCM66_1064 PF16193 AAA C-terminal domain VCM66_1064 PF00004 ATPase family associated with various cellular activities (AAA) VCM66_1066 PF02403 Seryl-tRNA synthetase N-terminal domain VCM66_1066 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCM66_1067 PF00202 Aminotransferase class-III VCM66_1068 PF04055 Radical SAM superfamily VCM66_1068 PF06968 Biotin and Thiamin Synthesis associated domain VCM66_1069 PF00155 Aminotransferase class I and II VCM66_1070 PF08241 Methyltransferase domain VCM66_1073 PF01435 Peptidase family M48 VCM66_1075 PF00106 short chain dehydrogenase VCM66_1080 PF16036 Chalcone isomerase-like VCM66_1082 PF00206 Lyase VCM66_1082 PF08328 Adenylosuccinate lyase C-terminal VCM66_1083 PF04356 Protein of unknown function (DUF489) VCM66_1085 PF00294 pfkB family carbohydrate kinase VCM66_1086 PF00816 H-NS histone family VCM66_1087 PF03553 Na+/H+ antiporter family VCM66_1088 PF01634 ATP phosphoribosyltransferase VCM66_1088 PF08029 HisG, C-terminal domain VCM66_1089 PF00815 Histidinol dehydrogenase VCM66_1090 PF00155 Aminotransferase class I and II VCM66_1091 PF00475 Imidazoleglycerol-phosphate dehydratase VCM66_1091 PF08645 Polynucleotide kinase 3 phosphatase VCM66_1092 PF00117 Glutamine amidotransferase class-I VCM66_1093 PF00977 Histidine biosynthesis protein VCM66_1094 PF00977 Histidine biosynthesis protein VCM66_1095 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VCM66_1095 PF01502 Phosphoribosyl-AMP cyclohydrolase VCM66_1096 PF00849 RNA pseudouridylate synthase VCM66_1097 PF03971 Monomeric isocitrate dehydrogenase VCM66_1098 PF00313 'Cold-shock' DNA-binding domain VCM66_1099 PF02617 ATP-dependent Clp protease adaptor protein ClpS VCM66_1100 PF07724 AAA domain (Cdc48 subfamily) VCM66_1100 PF00004 ATPase family associated with various cellular activities (AAA) VCM66_1100 PF17871 AAA lid domain VCM66_1100 PF02861 Clp amino terminal domain, pathogenicity island component VCM66_1100 PF10431 C-terminal, D2-small domain, of ClpB protein VCM66_1101 PF02080 TrkA-C domain VCM66_1101 PF06826 Predicted Permease Membrane Region VCM66_1102 PF00462 Glutaredoxin VCM66_1103 PF00465 Iron-containing alcohol dehydrogenase VCM66_1103 PF00171 Aldehyde dehydrogenase family VCM66_1104 PF01380 SIS domain VCM66_1104 PF01418 Helix-turn-helix domain, rpiR family VCM66_1105 PF00282 Pyridoxal-dependent decarboxylase conserved domain VCM66_1107 PF03956 Lysine exporter LysO VCM66_1109 PF04994 TfoX C-terminal domain VCM66_1109 PF04993 TfoX N-terminal domain VCM66_1112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1112 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1112 PF00989 PAS fold VCM66_1114 PF00266 Aminotransferase class-V VCM66_1117 PF18030 RimK PreATP-grasp domain VCM66_1117 PF08443 RimK-like ATP-grasp domain VCM66_1118 PF08003 Protein of unknown function (DUF1698) VCM66_1119 PF13649 Methyltransferase domain VCM66_1120 PF01904 Protein of unknown function DUF72 VCM66_1121 PF01336 OB-fold nucleic acid binding domain VCM66_1121 PF00152 tRNA synthetases class II (D, K and N) VCM66_1121 PF02938 GAD domain VCM66_1122 PF00265 Thymidine kinase VCM66_1123 PF00375 Sodium:dicarboxylate symporter family VCM66_1124 PF00290 Tryptophan synthase alpha chain VCM66_1125 PF00291 Pyridoxal-phosphate dependent enzyme VCM66_1126 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VCM66_1126 PF00218 Indole-3-glycerol phosphate synthase VCM66_1127 PF00591 Glycosyl transferase family, a/b domain VCM66_1127 PF02885 Glycosyl transferase family, helical bundle domain VCM66_1128 PF00117 Glutamine amidotransferase class-I VCM66_1129 PF00425 chorismate binding enzyme VCM66_1129 PF04715 Anthranilate synthase component I, N terminal region VCM66_1131 PF08056 Tryptophan operon leader peptide VCM66_1132 PF02811 PHP domain VCM66_1133 PF01300 Telomere recombination VCM66_1134 PF00849 RNA pseudouridylate synthase VCM66_1134 PF01479 S4 domain VCM66_1135 PF00664 ABC transporter transmembrane region VCM66_1135 PF00005 ABC transporter VCM66_1136 PF00005 ABC transporter VCM66_1136 PF00664 ABC transporter transmembrane region VCM66_1137 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_1139 PF00266 Aminotransferase class-V VCM66_1140 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1140 PF08448 PAS fold VCM66_1141 PF02698 DUF218 domain VCM66_1143 PF00390 Malic enzyme, N-terminal domain VCM66_1143 PF03949 Malic enzyme, NAD binding domain VCM66_1145 PF01259 SAICAR synthetase VCM66_1150 PF13488 Glycine zipper VCM66_1150 PF00691 OmpA family VCM66_1153 PF02913 FAD linked oxidases, C-terminal domain VCM66_1153 PF01565 FAD binding domain VCM66_1153 PF13183 4Fe-4S dicluster domain VCM66_1154 PF04191 Phospholipid methyltransferase VCM66_1155 PF00089 Trypsin VCM66_1157 PF00221 Aromatic amino acid lyase VCM66_1158 PF17391 Urocanase N-terminal domain VCM66_1158 PF17392 Urocanase C-terminal domain VCM66_1158 PF01175 Urocanase Rossmann-like domain VCM66_1159 PF00491 Arginase family VCM66_1160 PF01979 Amidohydrolase family VCM66_1161 PF00392 Bacterial regulatory proteins, gntR family VCM66_1161 PF07702 UTRA domain VCM66_1163 PF04269 Protein of unknown function, DUF440 VCM66_1164 PF09285 Elongation factor P, C-terminal VCM66_1164 PF08207 Elongation factor P (EF-P) KOW-like domain VCM66_1164 PF01132 Elongation factor P (EF-P) OB domain VCM66_1166 PF13426 PAS domain VCM66_1166 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1166 PF00563 EAL domain VCM66_1167 PF03104 DNA polymerase family B, exonuclease domain VCM66_1167 PF00136 DNA polymerase family B VCM66_1168 PF00196 Bacterial regulatory proteins, luxR family VCM66_1168 PF00072 Response regulator receiver domain VCM66_1169 PF01541 GIY-YIG catalytic domain VCM66_1169 PF02151 UvrB/uvrC motif VCM66_1169 PF08459 UvrC Helix-hairpin-helix N-terminal VCM66_1170 PF01066 CDP-alcohol phosphatidyltransferase VCM66_1171 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1171 PF00072 Response regulator receiver domain VCM66_1174 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VCM66_1174 PF01409 tRNA synthetases class II core domain (F) VCM66_1175 PF03147 Ferredoxin-fold anticodon binding domain VCM66_1175 PF01588 Putative tRNA binding domain VCM66_1175 PF03483 B3/4 domain VCM66_1175 PF03484 tRNA synthetase B5 domain VCM66_1175 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VCM66_1177 PF00216 Bacterial DNA-binding protein VCM66_1181 PF05724 Thiopurine S-methyltransferase (TPMT) VCM66_1183 PF02222 ATP-grasp domain VCM66_1186 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VCM66_1186 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCM66_1187 PF04172 LrgB-like family VCM66_1188 PF03788 LrgA family VCM66_1189 PF08411 Exonuclease C-terminal VCM66_1189 PF00929 Exonuclease VCM66_1191 PF01641 SelR domain VCM66_1192 PF02277 Phosphoribosyltransferase VCM66_1193 PF02654 Cobalamin-5-phosphate synthase VCM66_1194 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VCM66_1197 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VCM66_1199 PF01032 FecCD transport family VCM66_1200 PF00005 ABC transporter VCM66_1203 PF00672 HAMP domain VCM66_1203 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1203 PF17200 Single Cache domain 2 VCM66_1207 PF00994 Probable molybdopterin binding domain VCM66_1209 PF00175 Oxidoreductase NAD-binding domain VCM66_1209 PF00111 2Fe-2S iron-sulfur cluster binding domain VCM66_1209 PF00970 Oxidoreductase FAD-binding domain VCM66_1210 PF00268 Ribonucleotide reductase, small chain VCM66_1211 PF03477 ATP cone domain VCM66_1211 PF02867 Ribonucleotide reductase, barrel domain VCM66_1211 PF00317 Ribonucleotide reductase, all-alpha domain VCM66_1213 PF03989 DNA gyrase C-terminal domain, beta-propeller VCM66_1213 PF00521 DNA gyrase/topoisomerase IV, subunit A VCM66_1216 PF07690 Major Facilitator Superfamily VCM66_1218 PF00925 GTP cyclohydrolase II VCM66_1223 PF03734 L,D-transpeptidase catalytic domain VCM66_1223 PF01471 Putative peptidoglycan binding domain VCM66_1224 PF05951 Bacterial protein of unknown function (DUF882) VCM66_1225 PF00753 Metallo-beta-lactamase superfamily VCM66_1228 PF03480 Bacterial extracellular solute-binding protein, family 7 VCM66_1230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCM66_1231 PF07730 Histidine kinase VCM66_1231 PF17200 Single Cache domain 2 VCM66_1232 PF00072 Response regulator receiver domain VCM66_1232 PF00196 Bacterial regulatory proteins, luxR family VCM66_1233 PF01047 MarR family VCM66_1234 PF02028 BCCT, betaine/carnitine/choline family transporter VCM66_1235 PF01522 Polysaccharide deacetylase VCM66_1236 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCM66_1237 PF02378 Phosphotransferase system, EIIC VCM66_1238 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VCM66_1239 PF11975 Family 4 glycosyl hydrolase C-terminal domain VCM66_1239 PF02056 Family 4 glycosyl hydrolase VCM66_1240 PF04794 YdjC-like protein VCM66_1241 PF00356 Bacterial regulatory proteins, lacI family VCM66_1243 PF04349 Periplasmic glucan biosynthesis protein, MdoG VCM66_1244 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1244 PF17200 Single Cache domain 2 VCM66_1244 PF00672 HAMP domain VCM66_1248 PF00155 Aminotransferase class I and II VCM66_1250 PF01966 HD domain VCM66_1250 PF00672 HAMP domain VCM66_1251 PF08543 Phosphomethylpyrimidine kinase VCM66_1252 PF01336 OB-fold nucleic acid binding domain VCM66_1252 PF00152 tRNA synthetases class II (D, K and N) VCM66_1253 PF00672 HAMP domain VCM66_1253 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1254 PF01242 6-pyruvoyl tetrahydropterin synthase VCM66_1255 PF03313 Serine dehydratase alpha chain VCM66_1255 PF03315 Serine dehydratase beta chain VCM66_1256 PF03222 Tryptophan/tyrosine permease family VCM66_1257 PF00293 NUDIX domain VCM66_1258 PF04715 Anthranilate synthase component I, N terminal region VCM66_1258 PF00425 chorismate binding enzyme VCM66_1261 PF04317 YcjX-like family, DUF463 VCM66_1262 PF05128 Domain of unknown function (DUF697) VCM66_1263 PF18024 Helix-turn-helix domain VCM66_1263 PF00158 Sigma-54 interaction domain VCM66_1264 PF13302 Acetyltransferase (GNAT) domain VCM66_1266 PF00892 EamA-like transporter family VCM66_1267 PF01168 Alanine racemase, N-terminal domain VCM66_1267 PF00842 Alanine racemase, C-terminal domain VCM66_1268 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1268 PF00672 HAMP domain VCM66_1269 PF00939 Sodium:sulfate symporter transmembrane region VCM66_1270 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1270 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_1271 PF02954 Bacterial regulatory protein, Fis family VCM66_1271 PF00072 Response regulator receiver domain VCM66_1271 PF00158 Sigma-54 interaction domain VCM66_1272 PF04393 Protein of unknown function (DUF535) VCM66_1273 PF06629 MltA-interacting protein MipA VCM66_1274 PF00672 HAMP domain VCM66_1274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1274 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1275 PF00072 Response regulator receiver domain VCM66_1275 PF00486 Transcriptional regulatory protein, C terminal VCM66_1280 PF13407 Periplasmic binding protein domain VCM66_1282 PF00005 ABC transporter VCM66_1283 PF02653 Branched-chain amino acid transport system / permease component VCM66_1287 PF01970 Tripartite tricarboxylate transporter TctA family VCM66_1290 PF07729 FCD domain VCM66_1290 PF00392 Bacterial regulatory proteins, gntR family VCM66_1292 PF00285 Citrate synthase, C-terminal domain VCM66_1293 PF00330 Aconitase family (aconitate hydratase) VCM66_1293 PF00694 Aconitase C-terminal domain VCM66_1294 PF04303 PrpF protein VCM66_1295 PF16177 Acetyl-coenzyme A synthetase N-terminus VCM66_1295 PF13193 AMP-binding enzyme C-terminal domain VCM66_1295 PF00501 AMP-binding enzyme VCM66_1298 PF07687 Peptidase dimerisation domain VCM66_1298 PF01546 Peptidase family M20/M25/M40 VCM66_1299 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCM66_1300 PF04209 homogentisate 1,2-dioxygenase VCM66_1302 PF14497 Glutathione S-transferase, C-terminal domain VCM66_1302 PF02798 Glutathione S-transferase, N-terminal domain VCM66_1303 PF00072 Response regulator receiver domain VCM66_1304 PF01627 Hpt domain VCM66_1304 PF00072 Response regulator receiver domain VCM66_1304 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCM66_1304 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1304 PF00672 HAMP domain VCM66_1305 PF00462 Glutaredoxin VCM66_1305 PF08534 Redoxin VCM66_1308 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1309 PF10672 S-adenosylmethionine-dependent methyltransferase VCM66_1309 PF17785 PUA-like domain VCM66_1310 PF00708 Acylphosphatase VCM66_1311 PF04358 DsrC like protein VCM66_1313 PF01027 Inhibitor of apoptosis-promoting Bax1 VCM66_1314 PF00005 ABC transporter VCM66_1315 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1316 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1317 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_1318 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCM66_1318 PF14824 Sirohaem biosynthesis protein central VCM66_1318 PF10414 Sirohaem synthase dimerisation region VCM66_1320 PF04055 Radical SAM superfamily VCM66_1321 PF06508 Queuosine biosynthesis protein QueC VCM66_1325 PF03707 Bacterial signalling protein N terminal repeat VCM66_1325 PF00563 EAL domain VCM66_1325 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1327 PF17158 Membrane-associated sensor, integral membrane domain VCM66_1327 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1328 PF00012 Hsp70 protein VCM66_1329 PF00012 Hsp70 protein VCM66_1331 PF00563 EAL domain VCM66_1331 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1331 PF03707 Bacterial signalling protein N terminal repeat VCM66_1337 PF00271 Helicase conserved C-terminal domain VCM66_1337 PF04408 Helicase associated domain (HA2) VCM66_1337 PF11898 Domain of unknown function (DUF3418) VCM66_1337 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VCM66_1337 PF00270 DEAD/DEAH box helicase VCM66_1341 PF00012 Hsp70 protein VCM66_1343 PF10437 Bacterial lipoate protein ligase C-terminus VCM66_1343 PF03099 Biotin/lipoate A/B protein ligase family VCM66_1345 PF03466 LysR substrate binding domain VCM66_1345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1346 PF07690 Major Facilitator Superfamily VCM66_1347 PF00875 DNA photolyase VCM66_1347 PF03441 FAD binding domain of DNA photolyase VCM66_1348 PF00893 Small Multidrug Resistance protein VCM66_1349 PF00672 HAMP domain VCM66_1349 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1352 PF01584 CheW-like domain VCM66_1352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1352 PF01627 Hpt domain VCM66_1352 PF07194 P2 response regulator binding domain VCM66_1352 PF02895 Signal transducing histidine kinase, homodimeric domain VCM66_1353 PF00072 Response regulator receiver domain VCM66_1353 PF01584 CheW-like domain VCM66_1353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1353 PF01627 Hpt domain VCM66_1354 PF01739 CheR methyltransferase, SAM binding domain VCM66_1354 PF03705 CheR methyltransferase, all-alpha domain VCM66_1356 PF00072 Response regulator receiver domain VCM66_1356 PF01339 CheB methylesterase VCM66_1357 PF01584 CheW-like domain VCM66_1358 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1358 PF17202 Single cache domain 3 VCM66_1358 PF00672 HAMP domain VCM66_1360 PF12729 Four helix bundle sensory module for signal transduction VCM66_1360 PF00672 HAMP domain VCM66_1360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1361 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1361 PF08447 PAS fold VCM66_1361 PF13426 PAS domain VCM66_1362 PF00271 Helicase conserved C-terminal domain VCM66_1362 PF00270 DEAD/DEAH box helicase VCM66_1364 PF02321 Outer membrane efflux protein VCM66_1365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCM66_1365 PF00529 HlyD membrane-fusion protein of T1SS VCM66_1366 PF07690 Major Facilitator Superfamily VCM66_1368 PF02743 Cache domain VCM66_1368 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1368 PF00672 HAMP domain VCM66_1369 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VCM66_1370 PF05638 Type VI secretion system effector, Hcp VCM66_1371 PF16671 Actin cross-linking domain VCM66_1371 PF04717 Type VI secretion system, phage-baseplate injector VCM66_1376 PF01810 LysE type translocator VCM66_1377 PF01235 Sodium:alanine symporter family VCM66_1380 PF13416 Bacterial extracellular solute-binding protein VCM66_1381 PF13416 Bacterial extracellular solute-binding protein VCM66_1382 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1383 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1384 PF08402 TOBE domain VCM66_1384 PF00005 ABC transporter VCM66_1388 PF01171 PP-loop family VCM66_1389 PF00582 Universal stress protein family VCM66_1390 PF00027 Cyclic nucleotide-binding domain VCM66_1390 PF13545 Crp-like helix-turn-helix domain VCM66_1393 PF00403 Heavy-metal-associated domain VCM66_1395 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VCM66_1395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCM66_1398 PF00115 Cytochrome C and Quinol oxidase polypeptide I VCM66_1401 PF09308 LuxQ, periplasmic VCM66_1401 PF00072 Response regulator receiver domain VCM66_1401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1401 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1402 PF03412 Peptidase C39 family VCM66_1402 PF00005 ABC transporter VCM66_1402 PF00664 ABC transporter transmembrane region VCM66_1404 PF03412 Peptidase C39 family VCM66_1404 PF00005 ABC transporter VCM66_1404 PF00664 ABC transporter transmembrane region VCM66_1406 PF02794 RTX toxin acyltransferase family VCM66_1407 PF11713 Peptidase C80 family VCM66_1407 PF07634 RtxA repeat VCM66_1407 PF16671 Actin cross-linking domain VCM66_1407 PF11647 Membrane Localization Domain VCM66_1407 PF12146 Serine aminopeptidase, S33 VCM66_1420 PF01527 Transposase VCM66_1421 PF00665 Integrase core domain VCM66_1424 PF17414 MatP C-terminal ribbon-helix-helix domain VCM66_1424 PF06303 MatP N-terminal domain VCM66_1425 PF05362 Lon protease (S16) C-terminal proteolytic domain VCM66_1425 PF13654 AAA domain VCM66_1426 PF07977 FabA-like domain VCM66_1427 PF04957 Ribosome modulation factor VCM66_1431 PF10672 S-adenosylmethionine-dependent methyltransferase VCM66_1431 PF02926 THUMP domain VCM66_1431 PF01170 Putative RNA methylase family UPF0020 VCM66_1433 PF07126 Cell-division protein ZapC VCM66_1434 PF01180 Dihydroorotate dehydrogenase VCM66_1435 PF05088 Bacterial NAD-glutamate dehydrogenase VCM66_1437 PF01433 Peptidase family M1 domain VCM66_1437 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VCM66_1437 PF11940 Domain of unknown function (DUF3458) Ig-like fold VCM66_1439 PF11818 C-terminal domain of tail specific protease (DUF3340) VCM66_1439 PF00595 PDZ domain VCM66_1439 PF03572 Peptidase family S41 VCM66_1439 PF17804 Tail specific protease N-terminal domain VCM66_1440 PF04352 ProQ/FINO family VCM66_1440 PF17516 ProQ C-terminal domain VCM66_1441 PF13185 GAF domain VCM66_1442 PF00664 ABC transporter transmembrane region VCM66_1442 PF00005 ABC transporter VCM66_1443 PF04403 Paraquat-inducible protein A VCM66_1444 PF02470 MlaD protein VCM66_1445 PF01189 16S rRNA methyltransferase RsmB/F VCM66_1445 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VCM66_1445 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VCM66_1446 PF17783 CvfB-like winged helix domain VCM66_1446 PF13509 S1 domain VCM66_1449 PF00793 DAHP synthetase I family VCM66_1450 PF04461 Protein of unknown function (DUF520) VCM66_1451 PF02146 Sir2 family VCM66_1454 PF13247 4Fe-4S dicluster domain VCM66_1455 PF00384 Molybdopterin oxidoreductase VCM66_1455 PF01568 Molydopterin dinucleotide binding domain VCM66_1455 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VCM66_1457 PF02613 Nitrate reductase delta subunit VCM66_1461 PF02634 FdhD/NarQ family VCM66_1462 PF00005 ABC transporter VCM66_1462 PF12848 ABC transporter VCM66_1463 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1463 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1463 PF00989 PAS fold VCM66_1464 PF02954 Bacterial regulatory protein, Fis family VCM66_1464 PF00072 Response regulator receiver domain VCM66_1464 PF00158 Sigma-54 interaction domain VCM66_1465 PF12849 PBP superfamily domain VCM66_1466 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1467 PF00005 ABC transporter VCM66_1467 PF08402 TOBE domain VCM66_1468 PF12804 MobA-like NTP transferase domain VCM66_1469 PF03453 MoeA N-terminal region (domain I and II) VCM66_1469 PF03454 MoeA C-terminal region (domain IV) VCM66_1469 PF00994 Probable molybdopterin binding domain VCM66_1474 PF00480 ROK family VCM66_1477 PF02743 Cache domain VCM66_1477 PF00672 HAMP domain VCM66_1477 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1478 PF00877 NlpC/P60 family VCM66_1481 PF01554 MatE VCM66_1483 PF14743 DNA ligase OB-like domain VCM66_1483 PF01068 ATP dependent DNA ligase domain VCM66_1485 PF03544 Gram-negative bacterial TonB protein C-terminal VCM66_1486 PF02472 Biopolymer transport protein ExbD/TolR VCM66_1487 PF01618 MotA/TolQ/ExbB proton channel family VCM66_1488 PF01618 MotA/TolQ/ExbB proton channel family VCM66_1490 PF13416 Bacterial extracellular solute-binding protein VCM66_1491 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1492 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1493 PF00005 ABC transporter VCM66_1493 PF17912 MalK OB fold domain VCM66_1494 PF00455 DeoR C terminal sensor domain VCM66_1494 PF08220 DeoR-like helix-turn-helix domain VCM66_1495 PF03009 Glycerophosphoryl diester phosphodiesterase family VCM66_1496 PF04074 YhcH/YjgK/YiaL VCM66_1497 PF01042 Endoribonuclease L-PSP VCM66_1498 PF00356 Bacterial regulatory proteins, lacI family VCM66_1499 PF00232 Glycosyl hydrolase family 1 VCM66_1501 PF00141 Peroxidase VCM66_1502 PF03466 LysR substrate binding domain VCM66_1502 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1504 PF00529 HlyD membrane-fusion protein of T1SS VCM66_1506 PF02687 FtsX-like permease family VCM66_1506 PF12704 MacB-like periplasmic core domain VCM66_1506 PF00005 ABC transporter VCM66_1507 PF00005 ABC transporter VCM66_1507 PF02687 FtsX-like permease family VCM66_1507 PF12704 MacB-like periplasmic core domain VCM66_1508 PF02687 FtsX-like permease family VCM66_1508 PF12704 MacB-like periplasmic core domain VCM66_1508 PF00005 ABC transporter VCM66_1510 PF02322 Cytochrome bd terminal oxidase subunit II VCM66_1511 PF01654 Cytochrome bd terminal oxidase subunit I VCM66_1513 PF00206 Lyase VCM66_1513 PF10415 Fumarase C C-terminus VCM66_1519 PF13193 AMP-binding enzyme C-terminal domain VCM66_1519 PF00501 AMP-binding enzyme VCM66_1520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1520 PF03466 LysR substrate binding domain VCM66_1521 PF00361 Proton-conducting membrane transporter VCM66_1521 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VCM66_1522 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) VCM66_1523 PF00080 Copper/zinc superoxide dismutase (SODC) VCM66_1525 PF06628 Catalase-related immune-responsive VCM66_1525 PF00199 Catalase VCM66_1528 PF03466 LysR substrate binding domain VCM66_1528 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1529 PF03306 Alpha-acetolactate decarboxylase VCM66_1530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCM66_1530 PF00205 Thiamine pyrophosphate enzyme, central domain VCM66_1530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCM66_1532 PF00672 HAMP domain VCM66_1532 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1532 PF00563 EAL domain VCM66_1532 PF17154 Gammaproteobacterial periplasmic sensor domain VCM66_1533 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1534 PF01263 Aldose 1-epimerase VCM66_1535 PF10509 Galactokinase galactose-binding signature VCM66_1535 PF08544 GHMP kinases C terminal VCM66_1535 PF00288 GHMP kinases N terminal domain VCM66_1536 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VCM66_1536 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VCM66_1537 PF07690 Major Facilitator Superfamily VCM66_1539 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1539 PF00072 Response regulator receiver domain VCM66_1542 PF00072 Response regulator receiver domain VCM66_1542 PF01584 CheW-like domain VCM66_1544 PF00072 Response regulator receiver domain VCM66_1544 PF12431 Transcriptional regulator VCM66_1545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1545 PF00989 PAS fold VCM66_1545 PF17203 Single cache domain 3 VCM66_1545 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VCM66_1547 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCM66_1551 PF04204 Homoserine O-succinyltransferase VCM66_1554 PF05971 RNA methyltransferase VCM66_1555 PF01863 Protein of unknown function DUF45 VCM66_1557 PF03466 LysR substrate binding domain VCM66_1557 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1561 PF02321 Outer membrane efflux protein VCM66_1562 PF00691 OmpA family VCM66_1562 PF05736 OprF membrane domain VCM66_1564 PF16653 Saccharopine dehydrogenase C-terminal domain VCM66_1564 PF03435 Saccharopine dehydrogenase NADP binding domain VCM66_1565 PF00202 Aminotransferase class-III VCM66_1566 PF06965 Na+/H+ antiporter 1 VCM66_1569 PF00005 ABC transporter VCM66_1570 PF01554 MatE VCM66_1571 PF13460 NAD(P)H-binding VCM66_1571 PF11066 Protein of unknown function (DUF2867) VCM66_1573 PF07690 Major Facilitator Superfamily VCM66_1574 PF00849 RNA pseudouridylate synthase VCM66_1574 PF01479 S4 domain VCM66_1575 PF00271 Helicase conserved C-terminal domain VCM66_1575 PF04851 Type III restriction enzyme, res subunit VCM66_1577 PF00072 Response regulator receiver domain VCM66_1577 PF00486 Transcriptional regulatory protein, C terminal VCM66_1579 PF01386 Ribosomal L25p family VCM66_1580 PF01590 GAF domain VCM66_1580 PF00563 EAL domain VCM66_1580 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1580 PF00360 Phytochrome region VCM66_1582 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1582 PF00672 HAMP domain VCM66_1582 PF12729 Four helix bundle sensory module for signal transduction VCM66_1586 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCM66_1586 PF12793 Sugar transport-related sRNA regulator N-term VCM66_1589 PF01752 Collagenase VCM66_1589 PF04151 Bacterial pre-peptidase C-terminal domain VCM66_1589 PF08453 Peptidase family M9 N-terminal VCM66_1591 PF03707 Bacterial signalling protein N terminal repeat VCM66_1591 PF00563 EAL domain VCM66_1591 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1592 PF00072 Response regulator receiver domain VCM66_1592 PF09308 LuxQ, periplasmic VCM66_1592 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1594 PF00571 CBS domain VCM66_1594 PF03448 MgtE intracellular N domain VCM66_1594 PF01769 Divalent cation transporter VCM66_1597 PF03222 Tryptophan/tyrosine permease family VCM66_1598 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCM66_1599 PF00005 ABC transporter VCM66_1602 PF06945 Protein of unknown function (DUF1289) VCM66_1604 PF13416 Bacterial extracellular solute-binding protein VCM66_1605 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1606 PF00005 ABC transporter VCM66_1607 PF01066 CDP-alcohol phosphatidyltransferase VCM66_1608 PF00849 RNA pseudouridylate synthase VCM66_1609 PF00209 Sodium:neurotransmitter symporter family VCM66_1610 PF13396 Phospholipase_D-nuclease N-terminal VCM66_1610 PF13091 PLD-like domain VCM66_1611 PF01053 Cys/Met metabolism PLP-dependent enzyme VCM66_1612 PF03352 Methyladenine glycosylase VCM66_1613 PF00873 AcrB/AcrD/AcrF family VCM66_1614 PF13533 Biotin-lipoyl like VCM66_1615 PF00529 HlyD membrane-fusion protein of T1SS VCM66_1615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCM66_1618 PF04012 PspA/IM30 family VCM66_1619 PF00158 Sigma-54 interaction domain VCM66_1619 PF02954 Bacterial regulatory protein, Fis family VCM66_1620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCM66_1621 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1622 PF12911 N-terminal TM domain of oligopeptide transport permease C VCM66_1622 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1623 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_1623 PF00005 ABC transporter VCM66_1624 PF00005 ABC transporter VCM66_1627 PF02833 DHHA2 domain VCM66_1627 PF01368 DHH family VCM66_1632 PF00384 Molybdopterin oxidoreductase VCM66_1632 PF01568 Molydopterin dinucleotide binding domain VCM66_1632 PF18364 Molybdopterin oxidoreductase N-terminal domain VCM66_1633 PF03264 NapC/NirT cytochrome c family, N-terminal region VCM66_1634 PF06796 Periplasmic nitrate reductase protein NapE VCM66_1635 PF01226 Formate/nitrite transporter VCM66_1637 PF01370 NAD dependent epimerase/dehydratase family VCM66_1638 PF02698 DUF218 domain VCM66_1640 PF04279 Intracellular septation protein A VCM66_1641 PF03061 Thioesterase superfamily VCM66_1642 PF03795 YCII-related domain VCM66_1644 PF08267 Cobalamin-independent synthase, N-terminal domain VCM66_1644 PF01717 Cobalamin-independent synthase, Catalytic domain VCM66_1646 PF03466 LysR substrate binding domain VCM66_1646 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1649 PF05193 Peptidase M16 inactive domain VCM66_1649 PF00675 Insulinase (Peptidase family M16) VCM66_1650 PF00563 EAL domain VCM66_1650 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1650 PF03707 Bacterial signalling protein N terminal repeat VCM66_1651 PF11842 Domain of unknown function (DUF3362) VCM66_1651 PF04055 Radical SAM superfamily VCM66_1651 PF08497 Radical SAM N-terminal VCM66_1652 PF01810 LysE type translocator VCM66_1653 PF01037 Lrp/AsnC ligand binding domain VCM66_1654 PF04310 MukB N-terminal VCM66_1654 PF16330 MukB hinge domain VCM66_1655 PF04288 MukE-like family VCM66_1656 PF17193 MukF C-terminal domain VCM66_1656 PF03882 MukF winged-helix domain VCM66_1656 PF17192 MukF middle domain VCM66_1658 PF02698 DUF218 domain VCM66_1659 PF00072 Response regulator receiver domain VCM66_1659 PF00486 Transcriptional regulatory protein, C terminal VCM66_1660 PF02613 Nitrate reductase delta subunit VCM66_1661 PF00356 Bacterial regulatory proteins, lacI family VCM66_1662 PF04993 TfoX N-terminal domain VCM66_1662 PF04994 TfoX C-terminal domain VCM66_1666 PF08323 Starch synthase catalytic domain VCM66_1666 PF00534 Glycosyl transferases group 1 VCM66_1667 PF00483 Nucleotidyl transferase VCM66_1670 PF01751 Toprim domain VCM66_1670 PF01396 Topoisomerase DNA binding C4 zinc finger VCM66_1670 PF08272 Topoisomerase I zinc-ribbon-like VCM66_1670 PF01131 DNA topoisomerase VCM66_1671 PF10692 Protein of unknown function (DUF2498) VCM66_1672 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCM66_1675 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VCM66_1676 PF04377 Arginine-tRNA-protein transferase, C terminus VCM66_1676 PF04376 Arginine-tRNA-protein transferase, N terminus VCM66_1677 PF01176 Translation initiation factor 1A / IF-1 VCM66_1678 PF12241 Trans-2-enoyl-CoA reductase catalytic region VCM66_1678 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VCM66_1678 PF07055 Enoyl reductase FAD binding domain VCM66_1679 PF02770 Acyl-CoA dehydrogenase, middle domain VCM66_1679 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCM66_1679 PF09317 Domain of unknown function (DUF1974) VCM66_1679 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCM66_1680 PF16295 Tetracyclin repressor-like, C-terminal domain VCM66_1680 PF00440 Bacterial regulatory proteins, tetR family VCM66_1683 PF07383 Protein of unknown function (DUF1496) VCM66_1684 PF00171 Aldehyde dehydrogenase family VCM66_1685 PF08362 YcdC-like protein, C-terminal region VCM66_1685 PF00440 Bacterial regulatory proteins, tetR family VCM66_1690 PF00924 Mechanosensitive ion channel VCM66_1690 PF05552 Conserved TM helix VCM66_1692 PF04403 Paraquat-inducible protein A VCM66_1693 PF02470 MlaD protein VCM66_1695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCM66_1696 PF00873 AcrB/AcrD/AcrF family VCM66_1697 PF13356 Arm DNA-binding domain VCM66_1697 PF00589 Phage integrase family VCM66_1699 PF00271 Helicase conserved C-terminal domain VCM66_1699 PF00176 SNF2 family N-terminal domain VCM66_1699 PF12419 SNF2 Helicase protein VCM66_1703 PF11867 Domain of unknown function (DUF3387) VCM66_1703 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCM66_1703 PF18766 SWI2/SNF2 ATPase VCM66_1707 PF02384 N-6 DNA Methylase VCM66_1711 PF07646 Kelch motif VCM66_1712 PF01344 Kelch motif VCM66_1713 PF01380 SIS domain VCM66_1713 PF01418 Helix-turn-helix domain, rpiR family VCM66_1714 PF00701 Dihydrodipicolinate synthetase family VCM66_1715 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCM66_1716 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCM66_1717 PF03480 Bacterial extracellular solute-binding protein, family 7 VCM66_1719 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VCM66_1720 PF00480 ROK family VCM66_1721 PF01979 Amidohydrolase family VCM66_1722 PF09264 Vibrio cholerae sialidase, lectin insertion VCM66_1722 PF13088 BNR repeat-like domain VCM66_1724 PF04002 RadC-like JAB domain VCM66_1727 PF00665 Integrase core domain VCM66_1728 PF01527 Transposase VCM66_1737 PF03441 FAD binding domain of DNA photolyase VCM66_1737 PF00875 DNA photolyase VCM66_1739 PF09905 DNA-binding protein VF530 VCM66_1740 PF00158 Sigma-54 interaction domain VCM66_1740 PF02954 Bacterial regulatory protein, Fis family VCM66_1740 PF01590 GAF domain VCM66_1742 PF00171 Aldehyde dehydrogenase family VCM66_1746 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCM66_1748 PF12833 Helix-turn-helix domain VCM66_1749 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCM66_1749 PF02378 Phosphotransferase system, EIIC VCM66_1749 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCM66_1750 PF01238 Phosphomannose isomerase type I VCM66_1751 PF06610 L-alanine exporter VCM66_1754 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1754 PF09308 LuxQ, periplasmic VCM66_1754 PF00072 Response regulator receiver domain VCM66_1754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1756 PF02445 Quinolinate synthetase A protein VCM66_1758 PF00691 OmpA family VCM66_1759 PF07676 WD40-like Beta Propeller Repeat VCM66_1759 PF04052 TolB amino-terminal domain VCM66_1761 PF02472 Biopolymer transport protein ExbD/TolR VCM66_1762 PF01618 MotA/TolQ/ExbB proton channel family VCM66_1763 PF03061 Thioesterase superfamily VCM66_1764 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) VCM66_1765 PF08173 Membrane bound YbgT-like protein VCM66_1766 PF02322 Cytochrome bd terminal oxidase subunit II VCM66_1767 PF01654 Cytochrome bd terminal oxidase subunit I VCM66_1768 PF05491 RuvB C-terminal winged helix domain VCM66_1768 PF05496 Holliday junction DNA helicase RuvB P-loop domain VCM66_1768 PF17864 RuvB AAA lid domain VCM66_1769 PF01330 RuvA N terminal domain VCM66_1769 PF07499 RuvA, C-terminal domain VCM66_1770 PF02075 Crossover junction endodeoxyribonuclease RuvC VCM66_1771 PF09190 DALR domain VCM66_1771 PF01406 tRNA synthetases class I (C) catalytic domain VCM66_1772 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCM66_1773 PF00149 Calcineurin-like phosphoesterase VCM66_1774 PF00563 EAL domain VCM66_1774 PF08668 HDOD domain VCM66_1775 PF02810 SEC-C motif VCM66_1776 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VCM66_1777 PF13609 Gram-negative porin VCM66_1778 PF06733 DEAD_2 VCM66_1778 PF13307 Helicase C-terminal domain VCM66_1779 PF01925 Sulfite exporter TauE/SafE VCM66_1780 PF07445 Primosomal replication protein priC VCM66_1781 PF10689 Protein of unknown function (DUF2496) VCM66_1782 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1782 PF00672 HAMP domain VCM66_1783 PF03372 Endonuclease/Exonuclease/phosphatase family VCM66_1784 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1785 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_1786 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_1787 PF00005 ABC transporter VCM66_1789 PF01228 Glycine radical VCM66_1789 PF02901 Pyruvate formate lyase-like VCM66_1791 PF02743 Cache domain VCM66_1791 PF00672 HAMP domain VCM66_1791 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1792 PF04055 Radical SAM superfamily VCM66_1794 PF03887 YfbU domain VCM66_1795 PF08298 PrkA AAA domain VCM66_1795 PF06798 PrkA serine protein kinase C-terminal domain VCM66_1796 PF04285 Protein of unknown function (DUF444) VCM66_1797 PF04293 SpoVR like protein VCM66_1798 PF01797 Transposase IS200 like VCM66_1799 PF02348 Cytidylyltransferase VCM66_1800 PF03966 Trm112p-like protein VCM66_1801 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VCM66_1802 PF00664 ABC transporter transmembrane region VCM66_1802 PF00005 ABC transporter VCM66_1803 PF13567 Domain of unknown function (DUF4131) VCM66_1803 PF03772 Competence protein VCM66_1803 PF00753 Metallo-beta-lactamase superfamily VCM66_1806 PF12704 MacB-like periplasmic core domain VCM66_1806 PF02687 FtsX-like permease family VCM66_1807 PF00005 ABC transporter VCM66_1808 PF02687 FtsX-like permease family VCM66_1808 PF12704 MacB-like periplasmic core domain VCM66_1810 PF00271 Helicase conserved C-terminal domain VCM66_1810 PF03461 TRCF domain VCM66_1810 PF00270 DEAD/DEAH box helicase VCM66_1810 PF17757 UvrB interaction domain VCM66_1810 PF02559 CarD-like/TRCF domain VCM66_1812 PF16458 Beta-prism lectin VCM66_1812 PF12563 Hemolytic toxin N terminal VCM66_1812 PF07968 Leukocidin/Hemolysin toxin family VCM66_1814 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_1816 PF05728 Uncharacterised protein family (UPF0227) VCM66_1818 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VCM66_1818 PF13036 Peptidoglycan-synthase activator LpoB VCM66_1821 PF01230 HIT domain VCM66_1822 PF00672 HAMP domain VCM66_1822 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1824 PF07840 FadR C-terminal domain VCM66_1824 PF00392 Bacterial regulatory proteins, gntR family VCM66_1825 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VCM66_1826 PF02600 Disulfide bond formation protein DsbB VCM66_1827 PF01580 FtsK/SpoIIIE family VCM66_1827 PF09397 Ftsk gamma domain VCM66_1827 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VCM66_1827 PF17854 FtsK alpha domain VCM66_1828 PF01037 Lrp/AsnC ligand binding domain VCM66_1829 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VCM66_1829 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VCM66_1831 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1831 PF03466 LysR substrate binding domain VCM66_1834 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VCM66_1835 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VCM66_1836 PF18073 Rubredoxin metal binding domain VCM66_1837 PF06305 Lipopolysaccharide assembly protein A domain VCM66_1838 PF00216 Bacterial DNA-binding protein VCM66_1839 PF00575 S1 RNA binding domain VCM66_1840 PF02224 Cytidylate kinase VCM66_1842 PF13145 PPIC-type PPIASE domain VCM66_1843 PF00216 Bacterial DNA-binding protein VCM66_1844 PF02190 ATP-dependent protease La (LON) substrate-binding domain VCM66_1844 PF05362 Lon protease (S16) C-terminal proteolytic domain VCM66_1844 PF00004 ATPase family associated with various cellular activities (AAA) VCM66_1845 PF10431 C-terminal, D2-small domain, of ClpB protein VCM66_1845 PF06689 ClpX C4-type zinc finger VCM66_1845 PF07724 AAA domain (Cdc48 subfamily) VCM66_1846 PF00574 Clp protease VCM66_1847 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCM66_1847 PF05698 Bacterial trigger factor protein (TF) C-terminus VCM66_1847 PF05697 Bacterial trigger factor protein (TF) VCM66_1849 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1849 PF02743 Cache domain VCM66_1849 PF00512 His Kinase A (phospho-acceptor) domain VCM66_1850 PF02954 Bacterial regulatory protein, Fis family VCM66_1850 PF00072 Response regulator receiver domain VCM66_1850 PF00158 Sigma-54 interaction domain VCM66_1851 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCM66_1852 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCM66_1853 PF03480 Bacterial extracellular solute-binding protein, family 7 VCM66_1855 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VCM66_1858 PF00990 Diguanylate cyclase, GGDEF domain VCM66_1858 PF03707 Bacterial signalling protein N terminal repeat VCM66_1858 PF13188 PAS domain VCM66_1858 PF00563 EAL domain VCM66_1866 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VCM66_1866 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VCM66_1868 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VCM66_1869 PF01494 FAD binding domain VCM66_1871 PF03466 LysR substrate binding domain VCM66_1871 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1874 PF01568 Molydopterin dinucleotide binding domain VCM66_1874 PF18364 Molybdopterin oxidoreductase N-terminal domain VCM66_1874 PF00384 Molybdopterin oxidoreductase VCM66_1875 PF03264 NapC/NirT cytochrome c family, N-terminal region VCM66_1876 PF00704 Glycosyl hydrolases family 18 VCM66_1877 PF07670 Nucleoside recognition VCM66_1877 PF01773 Na+ dependent nucleoside transporter N-terminus VCM66_1877 PF07662 Na+ dependent nucleoside transporter C-terminus VCM66_1879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_1879 PF03466 LysR substrate binding domain VCM66_1880 PF13406 Transglycosylase SLT domain VCM66_1881 PF05166 YcgL domain VCM66_1883 PF03775 Septum formation inhibitor MinC, C-terminal domain VCM66_1883 PF05209 Septum formation inhibitor MinC, N-terminal domain VCM66_1884 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VCM66_1885 PF03776 Septum formation topological specificity factor MinE VCM66_1886 PF04170 NlpE N-terminal domain VCM66_1890 PF07690 Major Facilitator Superfamily VCM66_1891 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_1891 PF00672 HAMP domain VCM66_1891 PF12729 Four helix bundle sensory module for signal transduction VCM66_1892 PF07883 Cupin domain VCM66_1892 PF01381 Helix-turn-helix VCM66_1894 PF03594 Benzoate membrane transport protein VCM66_1895 PF00501 AMP-binding enzyme VCM66_1895 PF13193 AMP-binding enzyme C-terminal domain VCM66_1896 PF13378 Enolase C-terminal domain-like VCM66_1897 PF00378 Enoyl-CoA hydratase/isomerase VCM66_1898 PF12697 Alpha/beta hydrolase family VCM66_1899 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCM66_1899 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCM66_1899 PF16582 Middle domain of thiamine pyrophosphate VCM66_1900 PF00425 chorismate binding enzyme VCM66_1901 PF00155 Aminotransferase class I and II VCM66_1903 PF01966 HD domain VCM66_1903 PF13286 Phosphohydrolase-associated domain VCM66_1908 PF01612 3'-5' exonuclease VCM66_1908 PF00570 HRDC domain VCM66_1909 PF00501 AMP-binding enzyme VCM66_1909 PF13193 AMP-binding enzyme C-terminal domain VCM66_1910 PF00561 alpha/beta hydrolase fold VCM66_1913 PF00814 Glycoprotease family VCM66_1914 PF04851 Type III restriction enzyme, res subunit VCM66_1914 PF13307 Helicase C-terminal domain VCM66_1916 PF00551 Formyl transferase VCM66_1916 PF01842 ACT domain VCM66_1917 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_1917 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCM66_1918 PF01343 Peptidase family S49 VCM66_1919 PF17763 Glutaminase/Asparaginase C-terminal domain VCM66_1919 PF00710 Asparaginase, N-terminal VCM66_1920 PF07023 Protein of unknown function (DUF1315) VCM66_1922 PF01641 SelR domain VCM66_1924 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCM66_1924 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCM66_1925 PF01263 Aldose 1-epimerase VCM66_1927 PF13847 Methyltransferase domain VCM66_1930 PF01584 CheW-like domain VCM66_1930 PF00072 Response regulator receiver domain VCM66_1931 PF00480 ROK family VCM66_1932 PF02887 Pyruvate kinase, alpha/beta domain VCM66_1932 PF00224 Pyruvate kinase, barrel domain VCM66_1933 PF01734 Patatin-like phospholipase VCM66_1936 PF00209 Sodium:neurotransmitter symporter family VCM66_1937 PF00367 phosphotransferase system, EIIB VCM66_1937 PF02378 Phosphotransferase system, EIIC VCM66_1938 PF01026 TatD related DNase VCM66_1939 PF09115 DNA polymerase III, delta subunit, C terminal VCM66_1940 PF02223 Thymidylate kinase VCM66_1941 PF02618 YceG-like family VCM66_1942 PF01063 Amino-transferase class IV VCM66_1943 PF00109 Beta-ketoacyl synthase, N-terminal domain VCM66_1943 PF02801 Beta-ketoacyl synthase, C-terminal domain VCM66_1944 PF00550 Phosphopantetheine attachment site VCM66_1946 PF00698 Acyl transferase domain VCM66_1947 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VCM66_1947 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VCM66_1948 PF02504 Fatty acid synthesis protein VCM66_1949 PF01783 Ribosomal L32p protein family VCM66_1950 PF02620 Large ribosomal RNA subunit accumulation protein YceD VCM66_1951 PF02545 Maf-like protein VCM66_1952 PF01479 S4 domain VCM66_1952 PF00849 RNA pseudouridylate synthase VCM66_1954 PF00575 S1 RNA binding domain VCM66_1954 PF10150 Ribonuclease E/G family VCM66_1954 PF12111 Polyribonucleotide phosphorylase C terminal VCM66_1955 PF00916 Sulfate permease family VCM66_1955 PF01740 STAS domain VCM66_1957 PF00171 Aldehyde dehydrogenase family VCM66_1957 PF00465 Iron-containing alcohol dehydrogenase VCM66_1959 PF01914 MarC family integral membrane protein VCM66_1960 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCM66_1960 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCM66_1961 PF03553 Na+/H+ antiporter family VCM66_1963 PF04245 37-kD nucleoid-associated bacterial protein VCM66_1964 PF07208 Protein of unknown function (DUF1414) VCM66_1965 PF11893 Domain of unknown function (DUF3413) VCM66_1965 PF00884 Sulfatase VCM66_1966 PF00850 Histone deacetylase domain VCM66_1967 PF01751 Toprim domain VCM66_1967 PF01131 DNA topoisomerase VCM66_1968 PF00462 Glutaredoxin VCM66_1969 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCM66_1969 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCM66_1972 PF04333 MlaA lipoprotein VCM66_1974 PF03918 Cytochrome C biogenesis protein VCM66_1975 PF08534 Redoxin VCM66_1976 PF01578 Cytochrome C assembly protein VCM66_1976 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VCM66_1977 PF03100 CcmE VCM66_1978 PF04995 Heme exporter protein D (CcmD) VCM66_1979 PF01578 Cytochrome C assembly protein VCM66_1980 PF03379 CcmB protein VCM66_1981 PF00005 ABC transporter VCM66_1983 PF01584 CheW-like domain VCM66_1985 PF13614 AAA domain VCM66_1986 PF00072 Response regulator receiver domain VCM66_1986 PF01339 CheB methylesterase VCM66_1987 PF07194 P2 response regulator binding domain VCM66_1987 PF01584 CheW-like domain VCM66_1987 PF02895 Signal transducing histidine kinase, homodimeric domain VCM66_1987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_1987 PF01627 Hpt domain VCM66_1988 PF04344 Chemotaxis phosphatase, CheZ VCM66_1989 PF00072 Response regulator receiver domain VCM66_1990 PF04539 Sigma-70 region 3 VCM66_1990 PF04542 Sigma-70 region 2 VCM66_1990 PF04545 Sigma-70, region 4 VCM66_1991 PF10609 NUBPL iron-transfer P-loop NTPase VCM66_1992 PF00448 SRP54-type protein, GTPase domain VCM66_1993 PF00771 FHIPEP family VCM66_1996 PF00675 Insulinase (Peptidase family M16) VCM66_1996 PF05193 Peptidase M16 inactive domain VCM66_1998 PF03485 Arginyl tRNA synthetase N terminal domain VCM66_1998 PF00750 tRNA synthetases class I (R) VCM66_1998 PF05746 DALR anticodon binding domain VCM66_2001 PF07664 Ferrous iron transport protein B C terminus VCM66_2001 PF02421 Ferrous iron transport protein B VCM66_2001 PF07670 Nucleoside recognition VCM66_2002 PF04023 FeoA domain VCM66_2004 PF02311 AraC-like ligand binding domain VCM66_2004 PF12833 Helix-turn-helix domain VCM66_2005 PF01297 Zinc-uptake complex component A periplasmic VCM66_2006 PF00005 ABC transporter VCM66_2007 PF00950 ABC 3 transport family VCM66_2008 PF00549 CoA-ligase VCM66_2008 PF02629 CoA binding domain VCM66_2009 PF00549 CoA-ligase VCM66_2009 PF08442 ATP-grasp domain VCM66_2010 PF02817 e3 binding domain VCM66_2010 PF00364 Biotin-requiring enzyme VCM66_2010 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCM66_2011 PF02779 Transketolase, pyrimidine binding domain VCM66_2011 PF16870 2-oxoglutarate dehydrogenase C-terminal VCM66_2011 PF00676 Dehydrogenase E1 component VCM66_2011 PF16078 2-oxoglutarate dehydrogenase N-terminus VCM66_2012 PF13085 2Fe-2S iron-sulfur cluster binding domain VCM66_2013 PF02910 Fumarate reductase flavoprotein C-term VCM66_2013 PF00890 FAD binding domain VCM66_2014 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCM66_2015 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCM66_2016 PF00285 Citrate synthase, C-terminal domain VCM66_2017 PF01784 NIF3 (NGG1p interacting factor 3) VCM66_2019 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCM66_2019 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCM66_2019 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCM66_2019 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCM66_2020 PF17206 SeqA protein N-terminal domain VCM66_2020 PF03925 SeqA protein C-terminal domain VCM66_2021 PF12697 Alpha/beta hydrolase family VCM66_2023 PF00258 Flavodoxin VCM66_2024 PF04172 LrgB-like family VCM66_2025 PF03788 LrgA family VCM66_2027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_2027 PF03466 LysR substrate binding domain VCM66_2029 PF01475 Ferric uptake regulator family VCM66_2030 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCM66_2030 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCM66_2031 PF11890 Domain of unknown function (DUF3410) VCM66_2031 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCM66_2031 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCM66_2032 PF02801 Beta-ketoacyl synthase, C-terminal domain VCM66_2032 PF00109 Beta-ketoacyl synthase, N-terminal domain VCM66_2033 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VCM66_2033 PF01266 FAD dependent oxidoreductase VCM66_2034 PF03358 NADPH-dependent FMN reductase VCM66_2035 PF08891 YfcL protein VCM66_2036 PF04315 Elongation factor P hydroxylase VCM66_2038 PF03458 UPF0126 domain VCM66_2039 PF01264 Chorismate synthase VCM66_2041 PF05175 Methyltransferase small domain VCM66_2042 PF01713 Smr domain VCM66_2043 PF01312 FlhB HrpN YscU SpaS Family VCM66_2044 PF01311 Bacterial export proteins, family 1 VCM66_2045 PF01313 Bacterial export proteins, family 3 VCM66_2046 PF00813 FliP family VCM66_2047 PF04347 Flagellar biosynthesis protein, FliO VCM66_2048 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCM66_2049 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCM66_2049 PF02154 Flagellar motor switch protein FliM VCM66_2050 PF03748 Flagellar basal body-associated protein FliL VCM66_2053 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCM66_2053 PF18269 T3SS EscN ATPase C-terminal domain VCM66_2054 PF02108 Flagellar assembly protein FliH VCM66_2055 PF14842 FliG N-terminal domain VCM66_2055 PF14841 FliG middle domain VCM66_2055 PF01706 FliG C-terminal domain VCM66_2056 PF08345 Flagellar M-ring protein C-terminal VCM66_2056 PF01514 Secretory protein of YscJ/FliF family VCM66_2057 PF02049 Flagellar hook-basal body complex protein FliE VCM66_2058 PF00072 Response regulator receiver domain VCM66_2058 PF00158 Sigma-54 interaction domain VCM66_2058 PF02954 Bacterial regulatory protein, Fis family VCM66_2059 PF13493 Domain of unknown function (DUF4118) VCM66_2059 PF00512 His Kinase A (phospho-acceptor) domain VCM66_2059 PF00989 PAS fold VCM66_2059 PF08447 PAS fold VCM66_2059 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_2059 PF13426 PAS domain VCM66_2060 PF00072 Response regulator receiver domain VCM66_2060 PF00158 Sigma-54 interaction domain VCM66_2060 PF02954 Bacterial regulatory protein, Fis family VCM66_2061 PF02561 Flagellar protein FliS VCM66_2063 PF07195 Flagellar hook-associated protein 2 C-terminus VCM66_2063 PF07196 Flagellin hook IN motif VCM66_2063 PF02465 Flagellar hook-associated protein 2 N-terminus VCM66_2064 PF03646 FlaG protein VCM66_2065 PF07196 Flagellin hook IN motif VCM66_2065 PF00700 Bacterial flagellin C-terminal helical region VCM66_2065 PF00669 Bacterial flagellin N-terminal helical region VCM66_2066 PF00669 Bacterial flagellin N-terminal helical region VCM66_2066 PF07196 Flagellin hook IN motif VCM66_2066 PF00700 Bacterial flagellin C-terminal helical region VCM66_2067 PF00700 Bacterial flagellin C-terminal helical region VCM66_2067 PF00669 Bacterial flagellin N-terminal helical region VCM66_2067 PF07196 Flagellin hook IN motif VCM66_2068 PF04261 Dyp-type peroxidase family VCM66_2069 PF11143 Protein of unknown function (DUF2919) VCM66_2073 PF03960 ArsC family VCM66_2075 PF07687 Peptidase dimerisation domain VCM66_2075 PF01546 Peptidase family M20/M25/M40 VCM66_2076 PF02557 D-alanyl-D-alanine carboxypeptidase VCM66_2079 PF06804 NlpB/DapX lipoprotein VCM66_2080 PF00701 Dihydrodipicolinate synthetase family VCM66_2083 PF00578 AhpC/TSA family VCM66_2084 PF00672 HAMP domain VCM66_2084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_2084 PF02743 Cache domain VCM66_2085 PF01594 AI-2E family transporter VCM66_2087 PF01435 Peptidase family M48 VCM66_2087 PF13181 Tetratricopeptide repeat VCM66_2088 PF03960 ArsC family VCM66_2089 PF03358 NADPH-dependent FMN reductase VCM66_2094 PF00860 Permease family VCM66_2095 PF04073 Aminoacyl-tRNA editing domain VCM66_2097 PF02872 5'-nucleotidase, C-terminal domain VCM66_2097 PF00149 Calcineurin-like phosphoesterase VCM66_2098 PF00793 DAHP synthetase I family VCM66_2099 PF13369 Transglutaminase-like superfamily VCM66_2100 PF04247 Invasion gene expression up-regulator, SirB VCM66_2101 PF17827 PrmC N-terminal domain VCM66_2101 PF13847 Methyltransferase domain VCM66_2102 PF00472 RF-1 domain VCM66_2102 PF03462 PCRF domain VCM66_2103 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VCM66_2103 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VCM66_2103 PF01488 Shikimate / quinate 5-dehydrogenase VCM66_2104 PF03550 Outer membrane lipoprotein LolB VCM66_2105 PF08544 GHMP kinases C terminal VCM66_2105 PF00288 GHMP kinases N terminal domain VCM66_2106 PF14572 Phosphoribosyl synthetase-associated domain VCM66_2106 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VCM66_2107 PF01195 Peptidyl-tRNA hydrolase VCM66_2108 PF06071 Protein of unknown function (DUF933) VCM66_2108 PF01926 50S ribosome-binding GTPase VCM66_2110 PF07196 Flagellin hook IN motif VCM66_2110 PF00700 Bacterial flagellin C-terminal helical region VCM66_2110 PF00669 Bacterial flagellin N-terminal helical region VCM66_2111 PF07196 Flagellin hook IN motif VCM66_2111 PF00700 Bacterial flagellin C-terminal helical region VCM66_2111 PF00669 Bacterial flagellin N-terminal helical region VCM66_2114 PF07196 Flagellin hook IN motif VCM66_2114 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCM66_2115 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VCM66_2115 PF10135 Rod binding protein VCM66_2116 PF02119 Flagellar P-ring protein VCM66_2117 PF02107 Flagellar L-ring protein VCM66_2118 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCM66_2118 PF00460 Flagella basal body rod protein VCM66_2119 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCM66_2119 PF00460 Flagella basal body rod protein VCM66_2120 PF07559 Flagellar basal body protein FlaE VCM66_2120 PF00460 Flagella basal body rod protein VCM66_2120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCM66_2121 PF13860 FlgD Ig-like domain VCM66_2121 PF03963 Flagellar hook capping protein - N-terminal region VCM66_2121 PF13861 FlgD Tudor-like domain VCM66_2122 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCM66_2122 PF00460 Flagella basal body rod protein VCM66_2123 PF00460 Flagella basal body rod protein VCM66_2124 PF01739 CheR methyltransferase, SAM binding domain VCM66_2124 PF03705 CheR methyltransferase, all-alpha domain VCM66_2125 PF01584 CheW-like domain VCM66_2125 PF00072 Response regulator receiver domain VCM66_2132 PF00550 Phosphopantetheine attachment site VCM66_2132 PF08242 Methyltransferase domain VCM66_2132 PF00501 AMP-binding enzyme VCM66_2132 PF00668 Condensation domain VCM66_2133 PF08021 Siderophore-interacting FAD-binding domain VCM66_2133 PF04954 Siderophore-interacting protein VCM66_2134 PF07715 TonB-dependent Receptor Plug Domain VCM66_2136 PF00691 OmpA family VCM66_2136 PF01389 OmpA-like transmembrane domain VCM66_2137 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCM66_2138 PF00403 Heavy-metal-associated domain VCM66_2140 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VCM66_2140 PF00728 Glycosyl hydrolase family 20, catalytic domain VCM66_2140 PF02838 Glycosyl hydrolase family 20, domain 2 VCM66_2140 PF03173 Putative carbohydrate binding domain VCM66_2143 PF01963 TraB family VCM66_2145 PF01713 Smr domain VCM66_2146 PF01479 S4 domain VCM66_2146 PF00849 RNA pseudouridylate synthase VCM66_2147 PF00990 Diguanylate cyclase, GGDEF domain VCM66_2147 PF08448 PAS fold VCM66_2149 PF02769 AIR synthase related protein, C-terminal domain VCM66_2149 PF00586 AIR synthase related protein, N-terminal domain VCM66_2150 PF00551 Formyl transferase VCM66_2152 PF13230 Glutamine amidotransferases class-II VCM66_2153 PF13580 SIS domain VCM66_2154 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCM66_2154 PF09317 Domain of unknown function (DUF1974) VCM66_2154 PF02770 Acyl-CoA dehydrogenase, middle domain VCM66_2154 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCM66_2156 PF00929 Exonuclease VCM66_2157 PF00075 RNase H VCM66_2158 PF08241 Methyltransferase domain VCM66_2159 PF16123 Hydroxyacylglutathione hydrolase C-terminus VCM66_2159 PF00753 Metallo-beta-lactamase superfamily VCM66_2160 PF01464 Transglycosylase SLT domain VCM66_2160 PF01476 LysM domain VCM66_2161 PF03372 Endonuclease/Exonuclease/phosphatase family VCM66_2162 PF00543 Nitrogen regulatory protein P-II VCM66_2163 PF05870 Phenolic acid decarboxylase (PAD) VCM66_2164 PF00034 Cytochrome c VCM66_2165 PF11734 TilS substrate C-terminal domain VCM66_2165 PF09179 TilS substrate binding domain VCM66_2165 PF01171 PP-loop family VCM66_2167 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VCM66_2168 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VCM66_2168 PF01336 OB-fold nucleic acid binding domain VCM66_2168 PF02811 PHP domain VCM66_2168 PF07733 Bacterial DNA polymerase III alpha NTPase domain VCM66_2168 PF14579 Helix-hairpin-helix motif VCM66_2169 PF01351 Ribonuclease HII VCM66_2170 PF02684 Lipid-A-disaccharide synthetase VCM66_2171 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_2171 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VCM66_2172 PF07977 FabA-like domain VCM66_2173 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VCM66_2173 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_2174 PF03938 Outer membrane protein (OmpH-like) VCM66_2175 PF01103 Surface antigen VCM66_2175 PF07244 Surface antigen variable number repeat VCM66_2176 PF17820 PDZ domain VCM66_2176 PF02163 Peptidase family M50 VCM66_2177 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VCM66_2177 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VCM66_2177 PF13288 DXP reductoisomerase C-terminal domain VCM66_2179 PF01255 Putative undecaprenyl diphosphate synthase VCM66_2180 PF01765 Ribosome recycling factor VCM66_2181 PF00696 Amino acid kinase family VCM66_2182 PF00889 Elongation factor TS VCM66_2183 PF00318 Ribosomal protein S2 VCM66_2184 PF00557 Metallopeptidase family M24 VCM66_2185 PF08335 GlnD PII-uridylyltransferase VCM66_2185 PF01966 HD domain VCM66_2185 PF01909 Nucleotidyltransferase domain VCM66_2187 PF11944 Protein of unknown function (DUF3461) VCM66_2188 PF04608 Phosphatidylglycerophosphatase A VCM66_2189 PF02769 AIR synthase related protein, C-terminal domain VCM66_2189 PF00586 AIR synthase related protein, N-terminal domain VCM66_2190 PF01029 NusB family VCM66_2191 PF00885 6,7-dimethyl-8-ribityllumazine synthase VCM66_2192 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VCM66_2192 PF00925 GTP cyclohydrolase II VCM66_2193 PF00677 Lumazine binding domain VCM66_2194 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCM66_2194 PF01872 RibD C-terminal domain VCM66_2195 PF03477 ATP cone domain VCM66_2196 PF00171 Aldehyde dehydrogenase family VCM66_2197 PF01472 PUA domain VCM66_2197 PF00696 Amino acid kinase family VCM66_2198 PF07417 Sigma factor-binding transcriptional regulator Crl VCM66_2200 PF00156 Phosphoribosyl transferase domain VCM66_2201 PF00860 Permease family VCM66_2202 PF07687 Peptidase dimerisation domain VCM66_2202 PF01546 Peptidase family M20/M25/M40 VCM66_2203 PF08443 RimK-like ATP-grasp domain VCM66_2203 PF18030 RimK PreATP-grasp domain VCM66_2204 PF08443 RimK-like ATP-grasp domain VCM66_2204 PF18030 RimK PreATP-grasp domain VCM66_2206 PF00209 Sodium:neurotransmitter symporter family VCM66_2208 PF00990 Diguanylate cyclase, GGDEF domain VCM66_2208 PF17158 Membrane-associated sensor, integral membrane domain VCM66_2210 PF11798 IMS family HHH motif VCM66_2210 PF00817 impB/mucB/samB family VCM66_2212 PF02424 ApbE family VCM66_2213 PF00970 Oxidoreductase FAD-binding domain VCM66_2213 PF00111 2Fe-2S iron-sulfur cluster binding domain VCM66_2213 PF00175 Oxidoreductase NAD-binding domain VCM66_2214 PF02508 Rnf-Nqr subunit, membrane protein VCM66_2215 PF02508 Rnf-Nqr subunit, membrane protein VCM66_2216 PF04205 FMN-binding domain VCM66_2217 PF03116 NQR2, RnfD, RnfE family VCM66_2218 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VCM66_2218 PF11973 NQRA C-terminal domain VCM66_2219 PF01722 BolA-like protein VCM66_2220 PF05175 Methyltransferase small domain VCM66_2222 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCM66_2223 PF07690 Major Facilitator Superfamily VCM66_2225 PF04542 Sigma-70 region 2 VCM66_2225 PF04545 Sigma-70, region 4 VCM66_2228 PF03502 Nucleoside-specific channel-forming protein, Tsx VCM66_2230 PF02558 Ketopantoate reductase PanE/ApbA VCM66_2230 PF08546 Ketopantoate reductase PanE/ApbA C terminal VCM66_2231 PF01965 DJ-1/PfpI family VCM66_2232 PF00266 Aminotransferase class-V VCM66_2233 PF02657 Fe-S metabolism associated domain VCM66_2234 PF00899 ThiF family VCM66_2235 PF06725 3D domain VCM66_2235 PF03562 MltA specific insert domain VCM66_2239 PF00696 Amino acid kinase family VCM66_2239 PF00583 Acetyltransferase (GNAT) family VCM66_2242 PF13538 UvrD-like helicase C-terminal domain VCM66_2243 PF13361 UvrD-like helicase C-terminal domain VCM66_2243 PF12705 PD-(D/E)XK nuclease superfamily VCM66_2243 PF00580 UvrD/REP helicase N-terminal domain VCM66_2245 PF17946 RecC C-terminal domain VCM66_2249 PF07130 YebG protein VCM66_2252 PF14602 Hexapeptide repeat of succinyl-transferase VCM66_2252 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VCM66_2255 PF00583 Acetyltransferase (GNAT) family VCM66_2256 PF18030 RimK PreATP-grasp domain VCM66_2256 PF02080 TrkA-C domain VCM66_2256 PF08443 RimK-like ATP-grasp domain VCM66_2257 PF01544 CorA-like Mg2+ transporter protein VCM66_2259 PF01588 Putative tRNA binding domain VCM66_2260 PF00356 Bacterial regulatory proteins, lacI family VCM66_2261 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VCM66_2261 PF00703 Glycosyl hydrolases family 2 VCM66_2261 PF16353 Domain of unknown function(DUF4981) VCM66_2261 PF02929 Beta galactosidase small chain VCM66_2261 PF02837 Glycosyl hydrolases family 2, sugar binding domain VCM66_2263 PF00072 Response regulator receiver domain VCM66_2264 PF00501 AMP-binding enzyme VCM66_2265 PF03764 Elongation factor G, domain IV VCM66_2265 PF14492 Elongation Factor G, domain II VCM66_2265 PF00009 Elongation factor Tu GTP binding domain VCM66_2265 PF00679 Elongation factor G C-terminus VCM66_2265 PF03144 Elongation factor Tu domain 2 VCM66_2266 PF18073 Rubredoxin metal binding domain VCM66_2268 PF18429 Domain of unknown function (DUF5609) VCM66_2270 PF01048 Phosphorylase superfamily VCM66_2271 PF01676 Metalloenzyme superfamily VCM66_2272 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VCM66_2272 PF00591 Glycosyl transferase family, a/b domain VCM66_2272 PF02885 Glycosyl transferase family, helical bundle domain VCM66_2273 PF01791 DeoC/LacD family aldolase VCM66_2275 PF01773 Na+ dependent nucleoside transporter N-terminus VCM66_2275 PF07670 Nucleoside recognition VCM66_2275 PF07662 Na+ dependent nucleoside transporter C-terminus VCM66_2276 PF01026 TatD related DNase VCM66_2278 PF03883 Peroxide stress protein YaaA VCM66_2279 PF01235 Sodium:alanine symporter family VCM66_2282 PF03167 Uracil DNA glycosylase superfamily VCM66_2283 PF01261 Xylose isomerase-like TIM barrel VCM66_2284 PF01228 Glycine radical VCM66_2285 PF14821 Threonine synthase N terminus VCM66_2285 PF00291 Pyridoxal-phosphate dependent enzyme VCM66_2286 PF08544 GHMP kinases C terminal VCM66_2286 PF00288 GHMP kinases N terminal domain VCM66_2287 PF03447 Homoserine dehydrogenase, NAD binding domain VCM66_2287 PF00696 Amino acid kinase family VCM66_2287 PF01842 ACT domain VCM66_2287 PF13840 ACT domain VCM66_2287 PF00742 Homoserine dehydrogenase VCM66_2289 PF03737 Aldolase/RraA VCM66_2291 PF00072 Response regulator receiver domain VCM66_2291 PF00486 Transcriptional regulatory protein, C terminal VCM66_2292 PF00072 Response regulator receiver domain VCM66_2292 PF00989 PAS fold VCM66_2292 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_2292 PF00512 His Kinase A (phospho-acceptor) domain VCM66_2292 PF18415 Histidine kinase receptor ArcB trans-membrane domain VCM66_2292 PF01627 Hpt domain VCM66_2293 PF00990 Diguanylate cyclase, GGDEF domain VCM66_2293 PF00360 Phytochrome region VCM66_2293 PF01590 GAF domain VCM66_2293 PF00563 EAL domain VCM66_2294 PF16199 Radical_SAM C-terminal domain VCM66_2294 PF04055 Radical SAM superfamily VCM66_2296 PF01493 GXGXG motif VCM66_2296 PF04898 Glutamate synthase central domain VCM66_2296 PF01645 Conserved region in glutamate synthase VCM66_2296 PF00310 Glutamine amidotransferases class-II VCM66_2297 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_2297 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCM66_2299 PF01493 GXGXG motif VCM66_2299 PF01645 Conserved region in glutamate synthase VCM66_2299 PF04898 Glutamate synthase central domain VCM66_2299 PF00310 Glutamine amidotransferases class-II VCM66_2300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCM66_2300 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_2302 PF01048 Phosphorylase superfamily VCM66_2304 PF01497 Periplasmic binding protein VCM66_2305 PF03458 UPF0126 domain VCM66_2306 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_2306 PF03466 LysR substrate binding domain VCM66_2307 PF01925 Sulfite exporter TauE/SafE VCM66_2308 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VCM66_2312 PF02142 MGS-like domain VCM66_2312 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCM66_2312 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCM66_2313 PF00117 Glutamine amidotransferase class-I VCM66_2313 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VCM66_2314 PF05173 Dihydrodipicolinate reductase, C-terminus VCM66_2314 PF01113 Dihydrodipicolinate reductase, N-terminus VCM66_2315 PF00293 NUDIX domain VCM66_2317 PF01043 SecA preprotein cross-linking domain VCM66_2317 PF07517 SecA DEAD-like domain VCM66_2317 PF02810 SEC-C motif VCM66_2317 PF07516 SecA Wing and Scaffold domain VCM66_2319 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VCM66_2320 PF12327 FtsZ family, C-terminal domain VCM66_2320 PF00091 Tubulin/FtsZ family, GTPase domain VCM66_2321 PF02491 SHS2 domain inserted in FTSA VCM66_2322 PF03799 Cell division protein FtsQ VCM66_2322 PF08478 POTRA domain, FtsQ-type VCM66_2323 PF02875 Mur ligase family, glutamate ligase domain VCM66_2323 PF01225 Mur ligase family, catalytic domain VCM66_2323 PF08245 Mur ligase middle domain VCM66_2324 PF03033 Glycosyltransferase family 28 N-terminal domain VCM66_2324 PF04101 Glycosyltransferase family 28 C-terminal domain VCM66_2325 PF01098 Cell cycle protein VCM66_2326 PF02875 Mur ligase family, glutamate ligase domain VCM66_2326 PF08245 Mur ligase middle domain VCM66_2327 PF00953 Glycosyl transferase family 4 VCM66_2327 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VCM66_2328 PF02875 Mur ligase family, glutamate ligase domain VCM66_2328 PF08245 Mur ligase middle domain VCM66_2328 PF01225 Mur ligase family, catalytic domain VCM66_2329 PF02875 Mur ligase family, glutamate ligase domain VCM66_2329 PF08245 Mur ligase middle domain VCM66_2329 PF01225 Mur ligase family, catalytic domain VCM66_2330 PF03717 Penicillin-binding Protein dimerisation domain VCM66_2330 PF00905 Penicillin binding protein transpeptidase domain VCM66_2331 PF04999 Cell division protein FtsL VCM66_2332 PF01795 MraW methylase family VCM66_2335 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_2335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCM66_2336 PF02817 e3 binding domain VCM66_2336 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCM66_2336 PF00364 Biotin-requiring enzyme VCM66_2337 PF17831 Pyruvate dehydrogenase E1 component middle domain VCM66_2337 PF00456 Transketolase, thiamine diphosphate binding domain VCM66_2338 PF07729 FCD domain VCM66_2338 PF00392 Bacterial regulatory proteins, gntR family VCM66_2339 PF02872 5'-nucleotidase, C-terminal domain VCM66_2339 PF00149 Calcineurin-like phosphoesterase VCM66_2340 PF02272 DHHA1 domain VCM66_2340 PF01368 DHH family VCM66_2340 PF17768 RecJ OB domain VCM66_2341 PF10411 Disulfide bond isomerase protein N-terminus VCM66_2341 PF13098 Thioredoxin-like domain VCM66_2342 PF00589 Phage integrase family VCM66_2342 PF02899 Phage integrase, N-terminal SAM-like domain VCM66_2343 PF00258 Flavodoxin VCM66_2344 PF01510 N-acetylmuramoyl-L-alanine amidase VCM66_2345 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VCM66_2345 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VCM66_2346 PF00114 Pilin (bacterial filament) VCM66_2346 PF07963 Prokaryotic N-terminal methylation motif VCM66_2347 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VCM66_2347 PF00437 Type II/IV secretion system protein VCM66_2348 PF00482 Type II secretion system (T2SS), protein F VCM66_2349 PF06750 Bacterial Peptidase A24 N-terminal domain VCM66_2349 PF01478 Type IV leader peptidase family VCM66_2350 PF01121 Dephospho-CoA kinase VCM66_2351 PF07072 Cell division protein VCM66_2352 PF03884 DNA gyrase inhibitor YacG VCM66_2353 PF00521 DNA gyrase/topoisomerase IV, subunit A VCM66_2353 PF03989 DNA gyrase C-terminal domain, beta-propeller VCM66_2354 PF00204 DNA gyrase B VCM66_2354 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_2354 PF01751 Toprim domain VCM66_2354 PF00986 DNA gyrase B subunit, carboxyl terminus VCM66_2355 PF05728 Uncharacterised protein family (UPF0227) VCM66_2356 PF00149 Calcineurin-like phosphoesterase VCM66_2357 PF06853 Protein of unknown function (DUF1249) VCM66_2358 PF00293 NUDIX domain VCM66_2359 PF02321 Outer membrane efflux protein VCM66_2360 PF01467 Cytidylyltransferase-like VCM66_2360 PF00294 pfkB family carbohydrate kinase VCM66_2361 PF08335 GlnD PII-uridylyltransferase VCM66_2361 PF03710 Glutamate-ammonia ligase adenylyltransferase VCM66_2362 PF02743 Cache domain VCM66_2362 PF00672 HAMP domain VCM66_2362 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_2363 PF01928 CYTH domain VCM66_2364 PF01865 Protein of unknown function DUF47 VCM66_2365 PF01384 Phosphate transporter family VCM66_2366 PF08239 Bacterial SH3 domain VCM66_2368 PF13401 AAA domain VCM66_2368 PF01471 Putative peptidoglycan binding domain VCM66_2369 PF01966 HD domain VCM66_2369 PF12627 Probable RNA and SrmB- binding site of polymerase A VCM66_2369 PF01743 Poly A polymerase head domain VCM66_2370 PF03952 Enolase, N-terminal domain VCM66_2370 PF00113 Enolase, C-terminal TIM barrel domain VCM66_2371 PF06418 CTP synthase N-terminus VCM66_2371 PF00117 Glutamine amidotransferase class-I VCM66_2373 PF03819 MazG nucleotide pyrophosphohydrolase domain VCM66_2374 PF04607 Region found in RelA / SpoT proteins VCM66_2374 PF13291 ACT domain VCM66_2374 PF02824 TGS domain VCM66_2375 PF05958 tRNA (Uracil-5-)-methyltransferase VCM66_2375 PF01938 TRAM domain VCM66_2376 PF01627 Hpt domain VCM66_2376 PF00072 Response regulator receiver domain VCM66_2376 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCM66_2376 PF00672 HAMP domain VCM66_2376 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_2376 PF00512 His Kinase A (phospho-acceptor) domain VCM66_2377 PF00990 Diguanylate cyclase, GGDEF domain VCM66_2377 PF00563 EAL domain VCM66_2380 PF01648 4'-phosphopantetheinyl transferase superfamily VCM66_2381 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VCM66_2382 PF11967 Recombination protein O N terminal VCM66_2382 PF02565 Recombination protein O C terminal VCM66_2383 PF07650 KH domain VCM66_2383 PF01926 50S ribosome-binding GTPase VCM66_2384 PF00035 Double-stranded RNA binding motif VCM66_2384 PF14622 Ribonuclease-III-like VCM66_2385 PF10502 Signal peptidase, peptidase S26 VCM66_2386 PF06421 GTP-binding protein LepA C-terminus VCM66_2386 PF00009 Elongation factor Tu GTP binding domain VCM66_2386 PF00679 Elongation factor G C-terminus VCM66_2386 PF03144 Elongation factor Tu domain 2 VCM66_2388 PF17188 MucB/RseB C-terminal domain VCM66_2388 PF03888 MucB/RseB N-terminal domain VCM66_2389 PF03872 Anti sigma-E protein RseA, N-terminal domain VCM66_2389 PF03873 Anti sigma-E protein RseA, C-terminal domain VCM66_2390 PF04542 Sigma-70 region 2 VCM66_2390 PF08281 Sigma-70, region 4 VCM66_2392 PF02910 Fumarate reductase flavoprotein C-term VCM66_2392 PF00890 FAD binding domain VCM66_2394 PF03937 Flavinator of succinate dehydrogenase VCM66_2397 PF01494 FAD binding domain VCM66_2398 PF01494 FAD binding domain VCM66_2399 PF03695 Uncharacterised protein family (UPF0149) VCM66_2400 PF05164 Cell division protein ZapA VCM66_2401 PF01812 5-formyltetrahydrofolate cyclo-ligase family VCM66_2402 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VCM66_2403 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCM66_2403 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCM66_2403 PF01842 ACT domain VCM66_2404 PF10369 Small subunit of acetolactate synthase VCM66_2405 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCM66_2405 PF00205 Thiamine pyrophosphate enzyme, central domain VCM66_2405 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCM66_2406 PF00501 AMP-binding enzyme VCM66_2407 PF03466 LysR substrate binding domain VCM66_2407 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_2410 PF01569 PAP2 superfamily VCM66_2412 PF00682 HMGL-like VCM66_2412 PF08502 LeuA allosteric (dimerisation) domain VCM66_2413 PF00180 Isocitrate/isopropylmalate dehydrogenase VCM66_2414 PF00330 Aconitase family (aconitate hydratase) VCM66_2415 PF00694 Aconitase C-terminal domain VCM66_2419 PF00072 Response regulator receiver domain VCM66_2421 PF03739 Lipopolysaccharide export system permease LptF/LptG VCM66_2422 PF03739 Lipopolysaccharide export system permease LptF/LptG VCM66_2423 PF00883 Cytosol aminopeptidase family, catalytic domain VCM66_2423 PF02789 Cytosol aminopeptidase family, N-terminal domain VCM66_2424 PF04364 DNA polymerase III chi subunit, HolC VCM66_2425 PF00133 tRNA synthetases class I (I, L, M and V) VCM66_2425 PF08264 Anticodon-binding domain of tRNA VCM66_2425 PF10458 Valyl tRNA synthetase tRNA binding arm VCM66_2426 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCM66_2426 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCM66_2427 PF00849 RNA pseudouridylate synthase VCM66_2428 PF00271 Helicase conserved C-terminal domain VCM66_2428 PF12137 RNA polymerase recycling family C-terminal VCM66_2428 PF18339 RapA N-terminal Tudor like domain 1 VCM66_2428 PF18337 RapA N-terminal Tudor like domain VCM66_2428 PF00176 SNF2 family N-terminal domain VCM66_2429 PF13638 PIN domain VCM66_2429 PF02562 PhoH-like protein VCM66_2430 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCM66_2430 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCM66_2432 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCM66_2432 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCM66_2433 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VCM66_2433 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VCM66_2434 PF01042 Endoribonuclease L-PSP VCM66_2435 PF01553 Acyltransferase VCM66_2436 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCM66_2437 PF01722 BolA-like protein VCM66_2439 PF05494 MlaC protein VCM66_2440 PF02470 MlaD protein VCM66_2441 PF02405 Permease MlaE VCM66_2442 PF00005 ABC transporter VCM66_2444 PF01699 Sodium/calcium exchanger protein VCM66_2445 PF00571 CBS domain VCM66_2445 PF01380 SIS domain VCM66_2448 PF03968 OstA-like protein VCM66_2449 PF12399 Branched-chain amino acid ATP-binding cassette transporter VCM66_2449 PF00005 ABC transporter VCM66_2450 PF04552 Sigma-54, DNA binding domain VCM66_2450 PF04963 Sigma-54 factor, core binding domain VCM66_2450 PF00309 Sigma-54 factor, Activator interacting domain (AID) VCM66_2451 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCM66_2452 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCM66_2453 PF03668 P-loop ATPase protein family VCM66_2454 PF00381 PTS HPr component phosphorylation site VCM66_2455 PF03448 MgtE intracellular N domain VCM66_2455 PF01769 Divalent cation transporter VCM66_2455 PF00571 CBS domain VCM66_2456 PF01523 Putative modulator of DNA gyrase VCM66_2457 PF04751 Protein of unknown function (DUF615) VCM66_2458 PF00005 ABC transporter VCM66_2459 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_2462 PF02441 Flavoprotein VCM66_2463 PF08245 Mur ligase middle domain VCM66_2463 PF02875 Mur ligase family, glutamate ligase domain VCM66_2463 PF01225 Mur ligase family, catalytic domain VCM66_2465 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VCM66_2466 PF00719 Inorganic pyrophosphatase VCM66_2467 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VCM66_2468 PF04357 TamB, inner membrane protein subunit of TAM complex VCM66_2469 PF01103 Surface antigen VCM66_2469 PF07244 Surface antigen variable number repeat VCM66_2469 PF17243 POTRA domain TamA domain 1 VCM66_2470 PF01625 Peptide methionine sulfoxide reductase VCM66_2471 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VCM66_2472 PF10795 Protein of unknown function (DUF2607) VCM66_2474 PF00005 ABC transporter VCM66_2479 PF00009 Elongation factor Tu GTP binding domain VCM66_2480 PF01507 Phosphoadenosine phosphosulfate reductase family VCM66_2481 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCM66_2481 PF10414 Sirohaem synthase dimerisation region VCM66_2481 PF14824 Sirohaem biosynthesis protein central VCM66_2482 PF02872 5'-nucleotidase, C-terminal domain VCM66_2482 PF00149 Calcineurin-like phosphoesterase VCM66_2484 PF00271 Helicase conserved C-terminal domain VCM66_2484 PF00270 DEAD/DEAH box helicase VCM66_2484 PF03880 DbpA RNA binding domain VCM66_2485 PF13673 Acetyltransferase (GNAT) domain VCM66_2486 PF00892 EamA-like transporter family VCM66_2487 PF08525 Opacity-associated protein A N-terminal motif VCM66_2487 PF04225 Opacity-associated protein A LysM-like domain VCM66_2488 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCM66_2488 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCM66_2490 PF01196 Ribosomal protein L17 VCM66_2491 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VCM66_2491 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VCM66_2491 PF01000 RNA polymerase Rpb3/RpoA insert domain VCM66_2492 PF01479 S4 domain VCM66_2492 PF00163 Ribosomal protein S4/S9 N-terminal domain VCM66_2493 PF00411 Ribosomal protein S11 VCM66_2494 PF00416 Ribosomal protein S13/S18 VCM66_2495 PF00444 Ribosomal protein L36 VCM66_2496 PF00344 SecY translocase VCM66_2497 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VCM66_2498 PF00327 Ribosomal protein L30p/L7e VCM66_2499 PF00333 Ribosomal protein S5, N-terminal domain VCM66_2499 PF03719 Ribosomal protein S5, C-terminal domain VCM66_2500 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VCM66_2501 PF00347 Ribosomal protein L6 VCM66_2502 PF00410 Ribosomal protein S8 VCM66_2503 PF00253 Ribosomal protein S14p/S29e VCM66_2504 PF00673 ribosomal L5P family C-terminus VCM66_2504 PF00281 Ribosomal protein L5 VCM66_2505 PF00467 KOW motif VCM66_2505 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VCM66_2506 PF00238 Ribosomal protein L14p/L23e VCM66_2507 PF00366 Ribosomal protein S17 VCM66_2508 PF00831 Ribosomal L29 protein VCM66_2509 PF00252 Ribosomal protein L16p/L10e VCM66_2510 PF07650 KH domain VCM66_2510 PF00189 Ribosomal protein S3, C-terminal domain VCM66_2511 PF00237 Ribosomal protein L22p/L17e VCM66_2512 PF00203 Ribosomal protein S19 VCM66_2513 PF03947 Ribosomal Proteins L2, C-terminal domain VCM66_2513 PF00181 Ribosomal Proteins L2, RNA binding domain VCM66_2514 PF00276 Ribosomal protein L23 VCM66_2515 PF00573 Ribosomal protein L4/L1 family VCM66_2516 PF00297 Ribosomal protein L3 VCM66_2517 PF00338 Ribosomal protein S10p/S20e VCM66_2518 PF00588 SpoU rRNA Methylase family VCM66_2518 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCM66_2519 PF00773 RNB domain VCM66_2519 PF08206 Ribonuclease B OB domain VCM66_2519 PF08461 Ribonuclease R winged-helix domain VCM66_2519 PF17876 Cold shock domain VCM66_2519 PF00575 S1 RNA binding domain VCM66_2520 PF11893 Domain of unknown function (DUF3413) VCM66_2520 PF00884 Sulfatase VCM66_2521 PF08238 Sel1 repeat VCM66_2522 PF00709 Adenylosuccinate synthetase VCM66_2523 PF01112 Asparaginase VCM66_2524 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCM66_2526 PF02254 TrkA-N domain VCM66_2526 PF00999 Sodium/hydrogen exchanger family VCM66_2527 PF02525 Flavodoxin-like fold VCM66_2528 PF12848 ABC transporter VCM66_2528 PF00005 ABC transporter VCM66_2530 PF00561 alpha/beta hydrolase fold VCM66_2532 PF06794 Uncharacterised protein family (UPF0270) VCM66_2533 PF00485 Phosphoribulokinase / Uridine kinase family VCM66_2534 PF00027 Cyclic nucleotide-binding domain VCM66_2534 PF13545 Crp-like helix-turn-helix domain VCM66_2536 PF00171 Aldehyde dehydrogenase family VCM66_2537 PF04958 Arginine N-succinyltransferase beta subunit VCM66_2538 PF00202 Aminotransferase class-III VCM66_2539 PF00117 Glutamine amidotransferase class-I VCM66_2540 PF04055 Radical SAM superfamily VCM66_2540 PF18693 TRAM domain VCM66_2540 PF00919 Uncharacterized protein family UPF0004 VCM66_2543 PF00579 tRNA synthetases class I (W and Y) VCM66_2544 PF13419 Haloacid dehalogenase-like hydrolase VCM66_2545 PF00834 Ribulose-phosphate 3 epimerase family VCM66_2546 PF02086 D12 class N6 adenine-specific DNA methyltransferase VCM66_2548 PF01761 3-dehydroquinate synthase VCM66_2549 PF01202 Shikimate kinase VCM66_2550 PF03958 Bacterial type II/III secretion system short domain VCM66_2550 PF07660 Secretin and TonB N terminus short domain VCM66_2550 PF11741 AMIN domain VCM66_2550 PF00263 Bacterial type II and III secretion system protein VCM66_2555 PF00905 Penicillin binding protein transpeptidase domain VCM66_2555 PF00912 Transglycosylase VCM66_2555 PF17092 Penicillin-binding protein OB-like domain VCM66_2556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_2556 PF03466 LysR substrate binding domain VCM66_2557 PF08534 Redoxin VCM66_2557 PF00462 Glutaredoxin VCM66_2558 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCM66_2558 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_2561 PF14698 Argininosuccinate lyase C-terminal VCM66_2561 PF00206 Lyase VCM66_2562 PF00764 Arginosuccinate synthase VCM66_2563 PF00696 Amino acid kinase family VCM66_2564 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCM66_2564 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCM66_2565 PF01546 Peptidase family M20/M25/M40 VCM66_2565 PF07687 Peptidase dimerisation domain VCM66_2566 PF00311 Phosphoenolpyruvate carboxylase VCM66_2569 PF06426 Serine acetyltransferase, N-terminal VCM66_2569 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_2571 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VCM66_2571 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VCM66_2573 PF02556 Preprotein translocase subunit SecB VCM66_2574 PF00581 Rhodanese-like domain VCM66_2575 PF00152 tRNA synthetases class II (D, K and N) VCM66_2576 PF00890 FAD binding domain VCM66_2576 PF02910 Fumarate reductase flavoprotein C-term VCM66_2577 PF13085 2Fe-2S iron-sulfur cluster binding domain VCM66_2577 PF13183 4Fe-4S dicluster domain VCM66_2578 PF02300 Fumarate reductase subunit C VCM66_2579 PF02313 Fumarate reductase subunit D VCM66_2580 PF08207 Elongation factor P (EF-P) KOW-like domain VCM66_2580 PF01132 Elongation factor P (EF-P) OB domain VCM66_2580 PF09285 Elongation factor P, C-terminal VCM66_2581 PF04055 Radical SAM superfamily VCM66_2584 PF00118 TCP-1/cpn60 chaperonin family VCM66_2585 PF00166 Chaperonin 10 Kd subunit VCM66_2586 PF08220 DeoR-like helix-turn-helix domain VCM66_2586 PF00455 DeoR C terminal sensor domain VCM66_2590 PF00121 Triosephosphate isomerase VCM66_2592 PF03737 Aldolase/RraA VCM66_2593 PF01040 UbiA prenyltransferase family VCM66_2594 PF07724 AAA domain (Cdc48 subfamily) VCM66_2594 PF00004 ATPase family associated with various cellular activities (AAA) VCM66_2594 PF10431 C-terminal, D2-small domain, of ClpB protein VCM66_2595 PF00227 Proteasome subunit VCM66_2596 PF05036 Sporulation related domain VCM66_2597 PF00356 Bacterial regulatory proteins, lacI family VCM66_2598 PF18074 Primosomal protein N C-terminal domain VCM66_2598 PF00270 DEAD/DEAH box helicase VCM66_2598 PF17764 3′ DNA-binding domain (3′BD) VCM66_2598 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VCM66_2598 PF00271 Helicase conserved C-terminal domain VCM66_2599 PF01197 Ribosomal protein L31 VCM66_2601 PF03949 Malic enzyme, NAD binding domain VCM66_2601 PF00390 Malic enzyme, N-terminal domain VCM66_2602 PF01340 Met Apo-repressor, MetJ VCM66_2603 PF01053 Cys/Met metabolism PLP-dependent enzyme VCM66_2604 PF03447 Homoserine dehydrogenase, NAD binding domain VCM66_2604 PF00742 Homoserine dehydrogenase VCM66_2604 PF00696 Amino acid kinase family VCM66_2605 PF02219 Methylenetetrahydrofolate reductase VCM66_2606 PF06005 Cell division protein ZapB VCM66_2608 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VCM66_2609 PF00365 Phosphofructokinase VCM66_2610 PF16916 Dimerisation domain of Zinc Transporter VCM66_2610 PF01545 Cation efflux family VCM66_2612 PF00072 Response regulator receiver domain VCM66_2612 PF00486 Transcriptional regulatory protein, C terminal VCM66_2613 PF16527 Two-component sensor protein CpxA, periplasmic domain VCM66_2613 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_2613 PF00512 His Kinase A (phospho-acceptor) domain VCM66_2613 PF00672 HAMP domain VCM66_2614 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCM66_2614 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCM66_2615 PF00588 SpoU rRNA Methylase family VCM66_2616 PF04186 FxsA cytoplasmic membrane protein VCM66_2617 PF00990 Diguanylate cyclase, GGDEF domain VCM66_2617 PF17158 Membrane-associated sensor, integral membrane domain VCM66_2618 PF00206 Lyase VCM66_2618 PF10415 Fumarase C C-terminus VCM66_2619 PF03605 Anaerobic c4-dicarboxylate membrane transporter VCM66_2621 PF02683 Cytochrome C biogenesis protein transmembrane region VCM66_2621 PF11412 Disulphide bond corrector protein DsbC VCM66_2622 PF00072 Response regulator receiver domain VCM66_2622 PF00196 Bacterial regulatory proteins, luxR family VCM66_2623 PF02080 TrkA-C domain VCM66_2623 PF00999 Sodium/hydrogen exchanger family VCM66_2623 PF03471 Transporter associated domain VCM66_2625 PF00474 Sodium:solute symporter family VCM66_2626 PF02592 Putative vitamin uptake transporter VCM66_2628 PF00625 Guanylate kinase VCM66_2629 PF01192 RNA polymerase Rpb6 VCM66_2630 PF04607 Region found in RelA / SpoT proteins VCM66_2630 PF02824 TGS domain VCM66_2630 PF13291 ACT domain VCM66_2631 PF17191 RecG wedge domain VCM66_2631 PF00271 Helicase conserved C-terminal domain VCM66_2631 PF00270 DEAD/DEAH box helicase VCM66_2632 PF00860 Permease family VCM66_2633 PF00512 His Kinase A (phospho-acceptor) domain VCM66_2633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_2633 PF00672 HAMP domain VCM66_2634 PF00486 Transcriptional regulatory protein, C terminal VCM66_2634 PF00072 Response regulator receiver domain VCM66_2635 PF01272 Transcription elongation factor, GreA/GreB, C-term VCM66_2635 PF03449 Transcription elongation factor, N-terminal VCM66_2636 PF09371 Tex-like protein N-terminal domain VCM66_2636 PF17674 HHH domain VCM66_2636 PF00575 S1 RNA binding domain VCM66_2636 PF16921 Tex protein YqgF-like domain VCM66_2638 PF00561 alpha/beta hydrolase fold VCM66_2639 PF00156 Phosphoribosyl transferase domain VCM66_2640 PF01106 NifU-like domain VCM66_2640 PF01521 Iron-sulphur cluster biosynthesis VCM66_2641 PF00293 NUDIX domain VCM66_2642 PF00459 Inositol monophosphatase family VCM66_2643 PF01203 Type II secretion system (T2SS), protein N VCM66_2644 PF04612 Type II secretion system (T2SS), protein M VCM66_2645 PF05134 Type II secretion system (T2SS), protein L VCM66_2645 PF12693 GspL periplasmic domain VCM66_2646 PF03934 Type II secretion system (T2SS), protein K VCM66_2647 PF07963 Prokaryotic N-terminal methylation motif VCM66_2647 PF11612 Type II secretion system (T2SS), protein J VCM66_2648 PF02501 Type II secretion system (T2SS), protein I VCM66_2648 PF07963 Prokaryotic N-terminal methylation motif VCM66_2649 PF12019 Type II transport protein GspH VCM66_2650 PF08334 Type II secretion system (T2SS), protein G VCM66_2650 PF07963 Prokaryotic N-terminal methylation motif VCM66_2651 PF00482 Type II secretion system (T2SS), protein F VCM66_2652 PF00437 Type II/IV secretion system protein VCM66_2653 PF00263 Bacterial type II and III secretion system protein VCM66_2653 PF03958 Bacterial type II/III secretion system short domain VCM66_2654 PF11356 Type II secretion system protein C VCM66_2655 PF01479 S4 domain VCM66_2656 PF01430 Hsp33 protein VCM66_2658 PF01293 Phosphoenolpyruvate carboxykinase VCM66_2660 PF09500 Putative thioesterase (yiiD_Cterm) VCM66_2660 PF00583 Acetyltransferase (GNAT) family VCM66_2661 PF02580 D-Tyr-tRNA(Tyr) deacylase VCM66_2662 PF03631 Virulence factor BrkB VCM66_2663 PF03668 P-loop ATPase protein family VCM66_2666 PF00120 Glutamine synthetase, catalytic domain VCM66_2666 PF03951 Glutamine synthetase, beta-Grasp domain VCM66_2668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_2668 PF00989 PAS fold VCM66_2668 PF00512 His Kinase A (phospho-acceptor) domain VCM66_2669 PF00158 Sigma-54 interaction domain VCM66_2669 PF00072 Response regulator receiver domain VCM66_2669 PF02954 Bacterial regulatory protein, Fis family VCM66_2670 PF00563 EAL domain VCM66_2670 PF00990 Diguanylate cyclase, GGDEF domain VCM66_2670 PF03707 Bacterial signalling protein N terminal repeat VCM66_2670 PF13188 PAS domain VCM66_2671 PF00962 Adenosine/AMP deaminase VCM66_2675 PF12724 Flavodoxin domain VCM66_2676 PF02386 Cation transport protein VCM66_2677 PF09186 Domain of unknown function (DUF1949) VCM66_2677 PF01205 Uncharacterized protein family UPF0029 VCM66_2678 PF00378 Enoyl-CoA hydratase/isomerase VCM66_2678 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCM66_2678 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCM66_2679 PF02803 Thiolase, C-terminal domain VCM66_2679 PF00108 Thiolase, N-terminal domain VCM66_2680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_2680 PF03466 LysR substrate binding domain VCM66_2681 PF07690 Major Facilitator Superfamily VCM66_2682 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_2682 PF12804 MobA-like NTP transferase domain VCM66_2683 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VCM66_2683 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VCM66_2684 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCM66_2684 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCM66_2685 PF00231 ATP synthase VCM66_2686 PF00306 ATP synthase alpha/beta chain, C terminal domain VCM66_2686 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCM66_2686 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCM66_2687 PF00213 ATP synthase delta (OSCP) subunit VCM66_2688 PF00430 ATP synthase B/B' CF(0) VCM66_2689 PF00137 ATP synthase subunit C VCM66_2690 PF00119 ATP synthase A chain VCM66_2691 PF03899 ATP synthase I chain VCM66_2692 PF02195 ParB-like nuclease domain VCM66_2692 PF17762 HTH domain found in ParB protein VCM66_2693 PF13614 AAA domain VCM66_2694 PF02527 rRNA small subunit methyltransferase G VCM66_2695 PF13932 GidA associated domain VCM66_2695 PF01134 Glucose inhibited division protein A VCM66_A0006 PF01709 Transcriptional regulator VCM66_A0007 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VCM66_A0007 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VCM66_A0008 PF17200 Single Cache domain 2 VCM66_A0008 PF00672 HAMP domain VCM66_A0008 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0010 PF10928 Protein of unknown function (DUF2810) VCM66_A0011 PF00196 Bacterial regulatory proteins, luxR family VCM66_A0011 PF17874 MalT-like TPR region VCM66_A0013 PF00343 Carbohydrate phosphorylase VCM66_A0014 PF02446 4-alpha-glucanotransferase VCM66_A0015 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCM66_A0015 PF02806 Alpha amylase, C-terminal all-beta domain VCM66_A0015 PF00128 Alpha amylase, catalytic domain VCM66_A0016 PF05638 Type VI secretion system effector, Hcp VCM66_A0017 PF04717 Type VI secretion system, phage-baseplate injector VCM66_A0017 PF16671 Actin cross-linking domain VCM66_A0022 PF00842 Alanine racemase, C-terminal domain VCM66_A0022 PF01757 Acyltransferase family VCM66_A0022 PF01168 Alanine racemase, N-terminal domain VCM66_A0024 PF00939 Sodium:sulfate symporter transmembrane region VCM66_A0025 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VCM66_A0026 PF08329 Chitinase A, N-terminal domain VCM66_A0026 PF00704 Glycosyl hydrolases family 18 VCM66_A0030 PF00672 HAMP domain VCM66_A0030 PF02743 Cache domain VCM66_A0030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0034 PF01569 PAP2 superfamily VCM66_A0035 PF00375 Sodium:dicarboxylate symporter family VCM66_A0037 PF02630 SCO1/SenC VCM66_A0040 PF03616 Sodium/glutamate symporter VCM66_A0041 PF07238 PilZ domain VCM66_A0041 PF12945 Flagellar protein YcgR VCM66_A0045 PF00529 HlyD membrane-fusion protein of T1SS VCM66_A0045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCM66_A0046 PF11742 Protein of unknown function (DUF3302) VCM66_A0047 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0050 PF01048 Phosphorylase superfamily VCM66_A0052 PF08349 Protein of unknown function (DUF1722) VCM66_A0053 PF13411 MerR HTH family regulatory protein VCM66_A0054 PF00875 DNA photolyase VCM66_A0054 PF03441 FAD binding domain of DNA photolyase VCM66_A0055 PF03734 L,D-transpeptidase catalytic domain VCM66_A0055 PF01476 LysM domain VCM66_A0055 PF17969 L,D-transpeptidase C-terminal domain VCM66_A0058 PF00270 DEAD/DEAH box helicase VCM66_A0058 PF00271 Helicase conserved C-terminal domain VCM66_A0060 PF00326 Prolyl oligopeptidase family VCM66_A0060 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VCM66_A0061 PF00593 TonB dependent receptor VCM66_A0061 PF07715 TonB-dependent Receptor Plug Domain VCM66_A0065 PF00672 HAMP domain VCM66_A0065 PF12729 Four helix bundle sensory module for signal transduction VCM66_A0065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0067 PF12849 PBP superfamily domain VCM66_A0068 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0069 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0070 PF00005 ABC transporter VCM66_A0075 PF01740 STAS domain VCM66_A0075 PF00916 Sulfate permease family VCM66_A0077 PF01476 LysM domain VCM66_A0077 PF08525 Opacity-associated protein A N-terminal motif VCM66_A0077 PF01551 Peptidase family M23 VCM66_A0078 PF13188 PAS domain VCM66_A0078 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0078 PF00563 EAL domain VCM66_A0078 PF03707 Bacterial signalling protein N terminal repeat VCM66_A0080 PF03466 LysR substrate binding domain VCM66_A0080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0081 PF07690 Major Facilitator Superfamily VCM66_A0082 PF09278 MerR, DNA binding VCM66_A0082 PF00376 MerR family regulatory protein VCM66_A0086 PF00375 Sodium:dicarboxylate symporter family VCM66_A0089 PF02001 Protein of unknown function DUF134 VCM66_A0094 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCM66_A0094 PF01483 Proprotein convertase P-domain VCM66_A0094 PF07504 Fungalysin/Thermolysin Propeptide Motif VCM66_A0094 PF01447 Thermolysin metallopeptidase, catalytic domain VCM66_A0096 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VCM66_A0096 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VCM66_A0097 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VCM66_A0097 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VCM66_A0098 PF00581 Rhodanese-like domain VCM66_A0099 PF00563 EAL domain VCM66_A0099 PF00196 Bacterial regulatory proteins, luxR family VCM66_A0100 PF13419 Haloacid dehalogenase-like hydrolase VCM66_A0101 PF00916 Sulfate permease family VCM66_A0101 PF01740 STAS domain VCM66_A0102 PF00849 RNA pseudouridylate synthase VCM66_A0114 PF00004 ATPase family associated with various cellular activities (AAA) VCM66_A0114 PF07724 AAA domain (Cdc48 subfamily) VCM66_A0114 PF17871 AAA lid domain VCM66_A0114 PF10431 C-terminal, D2-small domain, of ClpB protein VCM66_A0121 PF04717 Type VI secretion system, phage-baseplate injector VCM66_A0121 PF16671 Actin cross-linking domain VCM66_A0125 PF05025 RbsD / FucU transport protein family VCM66_A0126 PF00005 ABC transporter VCM66_A0127 PF02653 Branched-chain amino acid transport system / permease component VCM66_A0128 PF13407 Periplasmic binding protein domain VCM66_A0129 PF00294 pfkB family carbohydrate kinase VCM66_A0130 PF00356 Bacterial regulatory proteins, lacI family VCM66_A0131 PF04973 Nicotinamide mononucleotide transporter VCM66_A0132 PF01048 Phosphorylase superfamily VCM66_A0134 PF03009 Glycerophosphoryl diester phosphodiesterase family VCM66_A0135 PF07690 Major Facilitator Superfamily VCM66_A0139 PF02743 Cache domain VCM66_A0139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0139 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0140 PF00158 Sigma-54 interaction domain VCM66_A0140 PF00072 Response regulator receiver domain VCM66_A0140 PF02954 Bacterial regulatory protein, Fis family VCM66_A0145 PF01266 FAD dependent oxidoreductase VCM66_A0146 PF00041 Fibronectin type III domain VCM66_A0146 PF12561 ToxR activated gene A lipoprotein domain VCM66_A0148 PF01327 Polypeptide deformylase VCM66_A0150 PF03334 Na+/H+ antiporter subunit VCM66_A0151 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VCM66_A0155 PF13244 Domain of unknown function (DUF4040) VCM66_A0155 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter VCM66_A0155 PF00361 Proton-conducting membrane transporter VCM66_A0155 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VCM66_A0157 PF00582 Universal stress protein family VCM66_A0158 PF03222 Tryptophan/tyrosine permease family VCM66_A0159 PF01212 Beta-eliminating lyase VCM66_A0161 PF12843 Putative quorum-sensing-regulated virulence factor VCM66_A0163 PF08448 PAS fold VCM66_A0163 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0163 PF00563 EAL domain VCM66_A0164 PF00313 'Cold-shock' DNA-binding domain VCM66_A0167 PF13519 von Willebrand factor type A domain VCM66_A0167 PF07584 Aerotolerance regulator N-terminal VCM66_A0170 PF01882 Protein of unknown function DUF58 VCM66_A0171 PF07726 ATPase family associated with various cellular activities (AAA) VCM66_A0171 PF17863 AAA lid domain VCM66_A0172 PF00672 HAMP domain VCM66_A0172 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0172 PF02743 Cache domain VCM66_A0175 PF07670 Nucleoside recognition VCM66_A0175 PF01773 Na+ dependent nucleoside transporter N-terminus VCM66_A0175 PF07662 Na+ dependent nucleoside transporter C-terminus VCM66_A0176 PF07687 Peptidase dimerisation domain VCM66_A0176 PF01546 Peptidase family M20/M25/M40 VCM66_A0178 PF00158 Sigma-54 interaction domain VCM66_A0178 PF01590 GAF domain VCM66_A0179 PF00970 Oxidoreductase FAD-binding domain VCM66_A0179 PF00175 Oxidoreductase NAD-binding domain VCM66_A0179 PF00042 Globin VCM66_A0180 PF00313 'Cold-shock' DNA-binding domain VCM66_A0181 PF03889 Alternative ribosome-rescue factor A VCM66_A0185 PF00072 Response regulator receiver domain VCM66_A0187 PF01256 Carbohydrate kinase VCM66_A0187 PF03853 YjeF-related protein N-terminus VCM66_A0188 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCM66_A0188 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCM66_A0190 PF07885 Ion channel VCM66_A0193 PF00478 IMP dehydrogenase / GMP reductase domain VCM66_A0194 PF00145 C-5 cytosine-specific DNA methylase VCM66_A0198 PF01797 Transposase IS200 like VCM66_A0200 PF00271 Helicase conserved C-terminal domain VCM66_A0200 PF00270 DEAD/DEAH box helicase VCM66_A0201 PF03605 Anaerobic c4-dicarboxylate membrane transporter VCM66_A0203 PF02540 NAD synthase VCM66_A0204 PF01467 Cytidylyltransferase-like VCM66_A0206 PF11849 Domain of unknown function (DUF3369) VCM66_A0207 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_A0207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0207 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0209 PF03553 Na+/H+ antiporter family VCM66_A0210 PF07690 Major Facilitator Superfamily VCM66_A0213 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0213 PF08448 PAS fold VCM66_A0214 PF00657 GDSL-like Lipase/Acylhydrolase VCM66_A0215 PF07968 Leukocidin/Hemolysin toxin family VCM66_A0215 PF12563 Hemolytic toxin N terminal VCM66_A0215 PF16458 Beta-prism lectin VCM66_A0216 PF12729 Four helix bundle sensory module for signal transduction VCM66_A0216 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0216 PF00672 HAMP domain VCM66_A0217 PF00561 alpha/beta hydrolase fold VCM66_A0218 PF03280 Proteobacterial lipase chaperone protein VCM66_A0219 PF00801 PKD domain VCM66_A0219 PF05547 Immune inhibitor A peptidase M6 VCM66_A0224 PF01032 FecCD transport family VCM66_A0225 PF01032 FecCD transport family VCM66_A0226 PF00005 ABC transporter VCM66_A0227 PF12833 Helix-turn-helix domain VCM66_A0228 PF00593 TonB dependent receptor VCM66_A0228 PF07715 TonB-dependent Receptor Plug Domain VCM66_A0231 PF00871 Acetokinase family VCM66_A0234 PF00672 HAMP domain VCM66_A0234 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0234 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0235 PF00072 Response regulator receiver domain VCM66_A0235 PF00486 Transcriptional regulatory protein, C terminal VCM66_A0237 PF01261 Xylose isomerase-like TIM barrel VCM66_A0238 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VCM66_A0240 PF00596 Class II Aldolase and Adducin N-terminal domain VCM66_A0241 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCM66_A0242 PF03611 PTS system sugar-specific permease component VCM66_A0243 PF00455 DeoR C terminal sensor domain VCM66_A0243 PF08220 DeoR-like helix-turn-helix domain VCM66_A0245 PF01292 Prokaryotic cytochrome b561 VCM66_A0246 PF00128 Alpha amylase, catalytic domain VCM66_A0249 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_A0253 PF00486 Transcriptional regulatory protein, C terminal VCM66_A0253 PF00072 Response regulator receiver domain VCM66_A0254 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0254 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0254 PF00672 HAMP domain VCM66_A0254 PF13426 PAS domain VCM66_A0254 PF14827 Double sensory domain of two-component sensor kinase VCM66_A0263 PF07690 Major Facilitator Superfamily VCM66_A0264 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0264 PF02743 Cache domain VCM66_A0264 PF00672 HAMP domain VCM66_A0266 PF07943 Penicillin-binding protein 5, C-terminal domain VCM66_A0266 PF00768 D-alanyl-D-alanine carboxypeptidase VCM66_A0270 PF00194 Eukaryotic-type carbonic anhydrase VCM66_A0272 PF00665 Integrase core domain VCM66_A0273 PF01527 Transposase VCM66_A0275 PF02347 Glycine cleavage system P-protein VCM66_A0276 PF01597 Glycine cleavage H-protein VCM66_A0277 PF00464 Serine hydroxymethyltransferase VCM66_A0279 PF08669 Glycine cleavage T-protein C-terminal barrel domain VCM66_A0279 PF01571 Aminomethyltransferase folate-binding domain VCM66_A0281 PF01609 Transposase DDE domain VCM66_A0281 PF05598 Transposase domain (DUF772) VCM66_A0286 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VCM66_A0286 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCM66_A0286 PF02824 TGS domain VCM66_A0286 PF03129 Anticodon binding domain VCM66_A0287 PF05198 Translation initiation factor IF-3, N-terminal domain VCM66_A0287 PF00707 Translation initiation factor IF-3, C-terminal domain VCM66_A0288 PF01632 Ribosomal protein L35 VCM66_A0289 PF00453 Ribosomal protein L20 VCM66_A0290 PF00589 Phage integrase family VCM66_A0290 PF13495 Phage integrase, N-terminal SAM-like domain VCM66_A0306 PF08212 Lipocalin-like domain VCM66_A0323 PF01966 HD domain VCM66_A0345 PF13286 Phosphohydrolase-associated domain VCM66_A0345 PF01966 HD domain VCM66_A0350 PF00293 NUDIX domain VCM66_A0355 PF13302 Acetyltransferase (GNAT) domain VCM66_A0356 PF08212 Lipocalin-like domain VCM66_A0362 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ VCM66_A0369 PF02016 LD-carboxypeptidase N-terminal domain VCM66_A0369 PF17676 LD-carboxypeptidase C-terminal domain VCM66_A0371 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB VCM66_A0372 PF01381 Helix-turn-helix VCM66_A0376 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCM66_A0396 PF00665 Integrase core domain VCM66_A0397 PF01527 Transposase VCM66_A0400 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB VCM66_A0401 PF01381 Helix-turn-helix VCM66_A0403 PF08212 Lipocalin-like domain VCM66_A0404 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VCM66_A0407 PF01555 DNA methylase VCM66_A0415 PF12833 Helix-turn-helix domain VCM66_A0415 PF01965 DJ-1/PfpI family VCM66_A0423 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCM66_A0430 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VCM66_A0431 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VCM66_A0434 PF05598 Transposase domain (DUF772) VCM66_A0434 PF01609 Transposase DDE domain VCM66_A0435 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_A0438 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCM66_A0440 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VCM66_A0453 PF01797 Transposase IS200 like VCM66_A0465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCM66_A0466 PF01527 Transposase VCM66_A0467 PF00665 Integrase core domain VCM66_A0470 PF13597 Anaerobic ribonucleoside-triphosphate reductase VCM66_A0470 PF03477 ATP cone domain VCM66_A0472 PF00155 Aminotransferase class I and II VCM66_A0473 PF18030 RimK PreATP-grasp domain VCM66_A0473 PF08443 RimK-like ATP-grasp domain VCM66_A0475 PF02378 Phosphotransferase system, EIIC VCM66_A0475 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCM66_A0476 PF00294 pfkB family carbohydrate kinase VCM66_A0477 PF00381 PTS HPr component phosphorylation site VCM66_A0477 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCM66_A0478 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCM66_A0478 PF00356 Bacterial regulatory proteins, lacI family VCM66_A0479 PF12320 Type 5 capsule protein repressor C-terminal domain VCM66_A0479 PF00149 Calcineurin-like phosphoesterase VCM66_A0480 PF13476 AAA domain VCM66_A0481 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0481 PF00072 Response regulator receiver domain VCM66_A0482 PF00155 Aminotransferase class I and II VCM66_A0485 PF00654 Voltage gated chloride channel VCM66_A0486 PF07683 Cobalamin synthesis protein cobW C-terminal domain VCM66_A0486 PF02492 CobW/HypB/UreG, nucleotide-binding domain VCM66_A0487 PF01926 50S ribosome-binding GTPase VCM66_A0488 PF02705 K+ potassium transporter VCM66_A0489 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VCM66_A0489 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCM66_A0489 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VCM66_A0489 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VCM66_A0489 PF10371 Domain of unknown function VCM66_A0490 PF13493 Domain of unknown function (DUF4118) VCM66_A0490 PF02702 Osmosensitive K+ channel His kinase sensor domain VCM66_A0490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0490 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0491 PF00072 Response regulator receiver domain VCM66_A0491 PF00486 Transcriptional regulatory protein, C terminal VCM66_A0492 PF02416 mttA/Hcf106 family VCM66_A0493 PF09335 SNARE associated Golgi protein VCM66_A0495 PF00563 EAL domain VCM66_A0495 PF10388 EAL-domain associated signalling protein domain VCM66_A0497 PF01292 Prokaryotic cytochrome b561 VCM66_A0498 PF04264 YceI-like domain VCM66_A0499 PF01226 Formate/nitrite transporter VCM66_A0501 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0501 PF03466 LysR substrate binding domain VCM66_A0502 PF06496 Protein of unknown function (DUF1097) VCM66_A0503 PF11398 Protein of unknown function (DUF2813) VCM66_A0504 PF02872 5'-nucleotidase, C-terminal domain VCM66_A0504 PF00149 Calcineurin-like phosphoesterase VCM66_A0505 PF03741 Integral membrane protein TerC family VCM66_A0508 PF03831 PhnA domain VCM66_A0508 PF08274 PhnA Zinc-Ribbon VCM66_A0516 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0516 PF17151 Periplasmic sensor domain VCM66_A0519 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0519 PF17158 Membrane-associated sensor, integral membrane domain VCM66_A0522 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VCM66_A0522 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VCM66_A0522 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VCM66_A0523 PF02233 NAD(P) transhydrogenase beta subunit VCM66_A0525 PF00072 Response regulator receiver domain VCM66_A0525 PF00486 Transcriptional regulatory protein, C terminal VCM66_A0528 PF03701 Uncharacterised protein family (UPF0181) VCM66_A0529 PF01253 Translation initiation factor SUI1 VCM66_A0531 PF07478 D-ala D-ala ligase C-terminus VCM66_A0531 PF01820 D-ala D-ala ligase N-terminus VCM66_A0533 PF00583 Acetyltransferase (GNAT) family VCM66_A0533 PF13607 Succinyl-CoA ligase like flavodoxin domain VCM66_A0533 PF13380 CoA binding domain VCM66_A0534 PF03466 LysR substrate binding domain VCM66_A0534 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0535 PF07715 TonB-dependent Receptor Plug Domain VCM66_A0535 PF00593 TonB dependent receptor VCM66_A0537 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCM66_A0537 PF12793 Sugar transport-related sRNA regulator N-term VCM66_A0539 PF03061 Thioesterase superfamily VCM66_A0543 PF00043 Glutathione S-transferase, C-terminal domain VCM66_A0543 PF02798 Glutathione S-transferase, N-terminal domain VCM66_A0546 PF12804 MobA-like NTP transferase domain VCM66_A0546 PF03479 Plants and Prokaryotes Conserved (PCC) domain VCM66_A0546 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_A0547 PF00005 ABC transporter VCM66_A0547 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_A0548 PF12911 N-terminal TM domain of oligopeptide transport permease C VCM66_A0548 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0549 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCM66_A0555 PF00854 POT family VCM66_A0558 PF00392 Bacterial regulatory proteins, gntR family VCM66_A0558 PF07702 UTRA domain VCM66_A0559 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0560 PF00005 ABC transporter VCM66_A0562 PF00266 Aminotransferase class-V VCM66_A0564 PF13419 Haloacid dehalogenase-like hydrolase VCM66_A0565 PF14760 Rnk N-terminus VCM66_A0565 PF01272 Transcription elongation factor, GreA/GreB, C-term VCM66_A0566 PF13419 Haloacid dehalogenase-like hydrolase VCM66_A0570 PF01741 Large-conductance mechanosensitive channel, MscL VCM66_A0572 PF01268 Formate--tetrahydrofolate ligase VCM66_A0573 PF01625 Peptide methionine sulfoxide reductase VCM66_A0573 PF01641 SelR domain VCM66_A0574 PF01227 GTP cyclohydrolase I VCM66_A0575 PF03453 MoeA N-terminal region (domain I and II) VCM66_A0575 PF03454 MoeA C-terminal region (domain IV) VCM66_A0575 PF00994 Probable molybdopterin binding domain VCM66_A0576 PF00899 ThiF family VCM66_A0578 PF00581 Rhodanese-like domain VCM66_A0579 PF04198 Putative sugar-binding domain VCM66_A0581 PF00923 Transaldolase/Fructose-6-phosphate aldolase VCM66_A0582 PF02779 Transketolase, pyrimidine binding domain VCM66_A0582 PF02780 Transketolase, C-terminal domain VCM66_A0582 PF00456 Transketolase, thiamine diphosphate binding domain VCM66_A0586 PF02810 SEC-C motif VCM66_A0586 PF07517 SecA DEAD-like domain VCM66_A0586 PF01043 SecA preprotein cross-linking domain VCM66_A0586 PF07516 SecA Wing and Scaffold domain VCM66_A0588 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCM66_A0588 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCM66_A0591 PF06942 GlpM protein VCM66_A0593 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0593 PF03466 LysR substrate binding domain VCM66_A0594 PF03992 Antibiotic biosynthesis monooxygenase VCM66_A0595 PF00881 Nitroreductase family VCM66_A0596 PF00873 AcrB/AcrD/AcrF family VCM66_A0599 PF04143 Sulphur transport VCM66_A0602 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCM66_A0602 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCM66_A0611 PF02378 Phosphotransferase system, EIIC VCM66_A0611 PF00367 phosphotransferase system, EIIB VCM66_A0613 PF00251 Glycosyl hydrolases family 32 N-terminal domain VCM66_A0613 PF08244 Glycosyl hydrolases family 32 C terminal VCM66_A0614 PF00294 pfkB family carbohydrate kinase VCM66_A0615 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VCM66_A0615 PF01266 FAD dependent oxidoreductase VCM66_A0616 PF00672 HAMP domain VCM66_A0616 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0617 PF13488 Glycine zipper VCM66_A0617 PF00691 OmpA family VCM66_A0619 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCM66_A0619 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCM66_A0620 PF13419 Haloacid dehalogenase-like hydrolase VCM66_A0621 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0621 PF12729 Four helix bundle sensory module for signal transduction VCM66_A0621 PF00672 HAMP domain VCM66_A0623 PF03606 C4-dicarboxylate anaerobic carrier VCM66_A0624 PF03313 Serine dehydratase alpha chain VCM66_A0624 PF03315 Serine dehydratase beta chain VCM66_A0625 PF00474 Sodium:solute symporter family VCM66_A0631 PF00356 Bacterial regulatory proteins, lacI family VCM66_A0632 PF00072 Response regulator receiver domain VCM66_A0632 PF00196 Bacterial regulatory proteins, luxR family VCM66_A0633 PF00672 HAMP domain VCM66_A0633 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0633 PF07730 Histidine kinase VCM66_A0633 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VCM66_A0634 PF13187 4Fe-4S dicluster domain VCM66_A0634 PF12838 4Fe-4S dicluster domain VCM66_A0636 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VCM66_A0636 PF00384 Molybdopterin oxidoreductase VCM66_A0636 PF01568 Molydopterin dinucleotide binding domain VCM66_A0637 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VCM66_A0638 PF03264 NapC/NirT cytochrome c family, N-terminal region VCM66_A0639 PF01966 HD domain VCM66_A0640 PF00196 Bacterial regulatory proteins, luxR family VCM66_A0640 PF00072 Response regulator receiver domain VCM66_A0641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0641 PF07730 Histidine kinase VCM66_A0641 PF05231 MASE1 VCM66_A0642 PF07690 Major Facilitator Superfamily VCM66_A0644 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0645 PF00005 ABC transporter VCM66_A0645 PF08402 TOBE domain VCM66_A0646 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VCM66_A0648 PF02803 Thiolase, C-terminal domain VCM66_A0648 PF00108 Thiolase, N-terminal domain VCM66_A0649 PF00106 short chain dehydrogenase VCM66_A0650 PF02355 Protein export membrane protein VCM66_A0650 PF07549 SecD/SecF GG Motif VCM66_A0651 PF07549 SecD/SecF GG Motif VCM66_A0651 PF13721 SecD export protein N-terminal TM region VCM66_A0651 PF02355 Protein export membrane protein VCM66_A0655 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0655 PF17158 Membrane-associated sensor, integral membrane domain VCM66_A0657 PF00483 Nucleotidyl transferase VCM66_A0658 PF06483 Chitinase C VCM66_A0658 PF00704 Glycosyl hydrolases family 18 VCM66_A0660 PF00465 Iron-containing alcohol dehydrogenase VCM66_A0662 PF02954 Bacterial regulatory protein, Fis family VCM66_A0662 PF14532 Sigma-54 interaction domain VCM66_A0662 PF00072 Response regulator receiver domain VCM66_A0663 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0663 PF02743 Cache domain VCM66_A0663 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0665 PF07690 Major Facilitator Superfamily VCM66_A0666 PF02887 Pyruvate kinase, alpha/beta domain VCM66_A0666 PF00224 Pyruvate kinase, barrel domain VCM66_A0667 PF00672 HAMP domain VCM66_A0667 PF01627 Hpt domain VCM66_A0667 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0667 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0667 PF00072 Response regulator receiver domain VCM66_A0668 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCM66_A0669 PF02142 MGS-like domain VCM66_A0670 PF00857 Isochorismatase family VCM66_A0672 PF01219 Prokaryotic diacylglycerol kinase VCM66_A0675 PF00580 UvrD/REP helicase N-terminal domain VCM66_A0675 PF12462 DNA helicase IV / RNA helicase N terminal VCM66_A0675 PF13361 UvrD-like helicase C-terminal domain VCM66_A0676 PF12805 FUSC-like inner membrane protein yccS VCM66_A0677 PF00072 Response regulator receiver domain VCM66_A0677 PF13188 PAS domain VCM66_A0677 PF08448 PAS fold VCM66_A0677 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0677 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0682 PF00005 ABC transporter VCM66_A0682 PF03459 TOBE domain VCM66_A0683 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VCM66_A0685 PF07685 CobB/CobQ-like glutamine amidotransferase domain VCM66_A0694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0694 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A0694 PF09308 LuxQ, periplasmic VCM66_A0694 PF00072 Response regulator receiver domain VCM66_A0695 PF13407 Periplasmic binding protein domain VCM66_A0697 PF01541 GIY-YIG catalytic domain VCM66_A0698 PF04337 Protein of unknown function, DUF480 VCM66_A0700 PF04363 Protein of unknown function (DUF496) VCM66_A0703 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VCM66_A0703 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VCM66_A0704 PF00230 Major intrinsic protein VCM66_A0706 PF04324 BFD-like [2Fe-2S] binding domain VCM66_A0706 PF01266 FAD dependent oxidoreductase VCM66_A0707 PF00890 FAD binding domain VCM66_A0708 PF02754 Cysteine-rich domain VCM66_A0708 PF13183 4Fe-4S dicluster domain VCM66_A0710 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VCM66_A0710 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VCM66_A0711 PF00085 Thioredoxin VCM66_A0712 PF07690 Major Facilitator Superfamily VCM66_A0715 PF03466 LysR substrate binding domain VCM66_A0715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0716 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0717 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0718 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_A0719 PF00005 ABC transporter VCM66_A0721 PF05762 VWA domain containing CoxE-like protein VCM66_A0722 PF07728 AAA domain (dynein-related subfamily) VCM66_A0722 PF17868 AAA lid domain VCM66_A0722 PF12592 Protein of unknown function (DUF3763) VCM66_A0723 PF00293 NUDIX domain VCM66_A0724 PF01212 Beta-eliminating lyase VCM66_A0725 PF00034 Cytochrome c VCM66_A0726 PF08361 MAATS-type transcriptional repressor, C-terminal region VCM66_A0726 PF00440 Bacterial regulatory proteins, tetR family VCM66_A0727 PF00270 DEAD/DEAH box helicase VCM66_A0727 PF00271 Helicase conserved C-terminal domain VCM66_A0728 PF04336 Acyl carrier protein phosphodiesterase VCM66_A0731 PF03222 Tryptophan/tyrosine permease family VCM66_A0732 PF12729 Four helix bundle sensory module for signal transduction VCM66_A0732 PF00672 HAMP domain VCM66_A0732 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0733 PF16363 GDP-mannose 4,6 dehydratase VCM66_A0735 PF03746 LamB/YcsF family VCM66_A0737 PF02626 Carboxyltransferase domain, subdomain A and B VCM66_A0739 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VCM66_A0739 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VCM66_A0741 PF00005 ABC transporter VCM66_A0742 PF13472 GDSL-like Lipase/Acylhydrolase family VCM66_A0743 PF07055 Enoyl reductase FAD binding domain VCM66_A0743 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VCM66_A0743 PF12241 Trans-2-enoyl-CoA reductase catalytic region VCM66_A0744 PF00563 EAL domain VCM66_A0744 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0744 PF00498 FHA domain VCM66_A0747 PF00684 DnaJ central domain VCM66_A0747 PF01556 DnaJ C terminal domain VCM66_A0747 PF00226 DnaJ domain VCM66_A0750 PF00665 Integrase core domain VCM66_A0751 PF01527 Transposase VCM66_A0754 PF02796 Helix-turn-helix domain of resolvase VCM66_A0754 PF00239 Resolvase, N terminal domain VCM66_A0757 PF13419 Haloacid dehalogenase-like hydrolase VCM66_A0760 PF00294 pfkB family carbohydrate kinase VCM66_A0761 PF00884 Sulfatase VCM66_A0763 PF00270 DEAD/DEAH box helicase VCM66_A0763 PF00271 Helicase conserved C-terminal domain VCM66_A0763 PF03880 DbpA RNA binding domain VCM66_A0764 PF08206 Ribonuclease B OB domain VCM66_A0764 PF00575 S1 RNA binding domain VCM66_A0764 PF00773 RNB domain VCM66_A0766 PF12849 PBP superfamily domain VCM66_A0767 PF01575 MaoC like domain VCM66_A0768 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VCM66_A0770 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VCM66_A0770 PF18416 N-acetylglucosamine binding protein domain 2 VCM66_A0771 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCM66_A0771 PF01447 Thermolysin metallopeptidase, catalytic domain VCM66_A0771 PF04151 Bacterial pre-peptidase C-terminal domain VCM66_A0771 PF07504 Fungalysin/Thermolysin Propeptide Motif VCM66_A0771 PF03413 Peptidase propeptide and YPEB domain VCM66_A0772 PF04151 Bacterial pre-peptidase C-terminal domain VCM66_A0772 PF04389 Peptidase family M28 VCM66_A0773 PF00491 Arginase family VCM66_A0774 PF17944 Arginine decarboxylase C-terminal helical extension VCM66_A0774 PF17810 Arginine decarboxylase helical bundle domain VCM66_A0774 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VCM66_A0777 PF00571 CBS domain VCM66_A0777 PF03448 MgtE intracellular N domain VCM66_A0777 PF01769 Divalent cation transporter VCM66_A0778 PF00166 Chaperonin 10 Kd subunit VCM66_A0779 PF00118 TCP-1/cpn60 chaperonin family VCM66_A0781 PF00696 Amino acid kinase family VCM66_A0781 PF13840 ACT domain VCM66_A0782 PF06339 Ectoine synthase VCM66_A0783 PF00202 Aminotransferase class-III VCM66_A0784 PF00583 Acetyltransferase (GNAT) family VCM66_A0786 PF01329 Pterin 4 alpha carbinolamine dehydratase VCM66_A0787 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VCM66_A0788 PF13193 AMP-binding enzyme C-terminal domain VCM66_A0788 PF00501 AMP-binding enzyme VCM66_A0792 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0792 PF03466 LysR substrate binding domain VCM66_A0794 PF00892 EamA-like transporter family VCM66_A0795 PF14602 Hexapeptide repeat of succinyl-transferase VCM66_A0795 PF00132 Bacterial transferase hexapeptide (six repeats) VCM66_A0795 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VCM66_A0796 PF00571 CBS domain VCM66_A0796 PF03471 Transporter associated domain VCM66_A0796 PF01595 Cyclin M transmembrane N-terminal domain VCM66_A0797 PF02566 OsmC-like protein VCM66_A0799 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCM66_A0802 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCM66_A0802 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCM66_A0806 PF13520 Amino acid permease VCM66_A0807 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0809 PF04397 LytTr DNA-binding domain VCM66_A0809 PF00072 Response regulator receiver domain VCM66_A0810 PF07694 5TMR of 5TMR-LYT VCM66_A0810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A0810 PF13492 GAF domain VCM66_A0810 PF06580 Histidine kinase VCM66_A0813 PF02687 FtsX-like permease family VCM66_A0813 PF12704 MacB-like periplasmic core domain VCM66_A0813 PF00005 ABC transporter VCM66_A0814 PF00005 ABC transporter VCM66_A0818 PF00248 Aldo/keto reductase family VCM66_A0819 PF00128 Alpha amylase, catalytic domain VCM66_A0821 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCM66_A0822 PF12262 Bacterial virulence factor lipase N-terminal VCM66_A0823 PF13426 PAS domain VCM66_A0823 PF08447 PAS fold VCM66_A0823 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0824 PF04151 Bacterial pre-peptidase C-terminal domain VCM66_A0824 PF01447 Thermolysin metallopeptidase, catalytic domain VCM66_A0824 PF03413 Peptidase propeptide and YPEB domain VCM66_A0824 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCM66_A0824 PF07504 Fungalysin/Thermolysin Propeptide Motif VCM66_A0826 PF03922 OmpW family VCM66_A0829 PF00768 D-alanyl-D-alanine carboxypeptidase VCM66_A0830 PF00155 Aminotransferase class I and II VCM66_A0830 PF00392 Bacterial regulatory proteins, gntR family VCM66_A0831 PF01654 Cytochrome bd terminal oxidase subunit I VCM66_A0832 PF02322 Cytochrome bd terminal oxidase subunit II VCM66_A0834 PF00291 Pyridoxal-phosphate dependent enzyme VCM66_A0835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0835 PF03466 LysR substrate binding domain VCM66_A0845 PF08240 Alcohol dehydrogenase GroES-like domain VCM66_A0845 PF00107 Zinc-binding dehydrogenase VCM66_A0846 PF00155 Aminotransferase class I and II VCM66_A0849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0849 PF03466 LysR substrate binding domain VCM66_A0850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCM66_A0855 PF01966 HD domain VCM66_A0856 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VCM66_A0856 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VCM66_A0857 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VCM66_A0858 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VCM66_A0858 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VCM66_A0863 PF02595 Glycerate kinase family VCM66_A0864 PF02447 GntP family permease VCM66_A0865 PF13556 PucR C-terminal helix-turn-helix domain VCM66_A0865 PF17853 GGDEF-like domain VCM66_A0865 PF05651 Putative sugar diacid recognition VCM66_A0866 PF00672 HAMP domain VCM66_A0866 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0867 PF01243 Pyridoxamine 5'-phosphate oxidase VCM66_A0868 PF06228 Haem utilisation ChuX/HutX VCM66_A0869 PF04055 Radical SAM superfamily VCM66_A0870 PF03544 Gram-negative bacterial TonB protein C-terminal VCM66_A0871 PF01618 MotA/TolQ/ExbB proton channel family VCM66_A0872 PF02472 Biopolymer transport protein ExbD/TolR VCM66_A0873 PF01497 Periplasmic binding protein VCM66_A0874 PF01032 FecCD transport family VCM66_A0875 PF00005 ABC transporter VCM66_A0883 PF02743 Cache domain VCM66_A0883 PF00672 HAMP domain VCM66_A0883 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0884 PF00111 2Fe-2S iron-sulfur cluster binding domain VCM66_A0884 PF03473 MOSC domain VCM66_A0884 PF00111 2Fe-2S iron-sulfur cluster binding domain VCM66_A0884 PF03476 MOSC N-terminal beta barrel domain VCM66_A0884 PF03473 MOSC domain VCM66_A0884 PF03476 MOSC N-terminal beta barrel domain VCM66_A0885 PF01979 Amidohydrolase family VCM66_A0887 PF05656 Protein of unknown function (DUF805) VCM66_A0889 PF05958 tRNA (Uracil-5-)-methyltransferase VCM66_A0890 PF05661 Protein of unknown function (DUF808) VCM66_A0893 PF00313 'Cold-shock' DNA-binding domain VCM66_A0899 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0899 PF08448 PAS fold VCM66_A0900 PF08220 DeoR-like helix-turn-helix domain VCM66_A0900 PF00455 DeoR C terminal sensor domain VCM66_A0903 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0904 PF14785 Maltose transport system permease protein MalF P2 domain VCM66_A0904 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0905 PF01547 Bacterial extracellular solute-binding protein VCM66_A0906 PF00005 ABC transporter VCM66_A0906 PF08402 TOBE domain VCM66_A0907 PF13302 Acetyltransferase (GNAT) domain VCM66_A0911 PF01906 Putative heavy-metal-binding VCM66_A0912 PF00196 Bacterial regulatory proteins, luxR family VCM66_A0914 PF01584 CheW-like domain VCM66_A0914 PF00072 Response regulator receiver domain VCM66_A0915 PF01047 MarR family VCM66_A0916 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0920 PF03707 Bacterial signalling protein N terminal repeat VCM66_A0920 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0920 PF00563 EAL domain VCM66_A0924 PF03466 LysR substrate binding domain VCM66_A0924 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0925 PF00990 Diguanylate cyclase, GGDEF domain VCM66_A0925 PF00563 EAL domain VCM66_A0929 PF02678 Pirin VCM66_A0929 PF05726 Pirin C-terminal cupin domain VCM66_A0930 PF06865 Pyrimidine/purine nucleoside phosphorylase VCM66_A0932 PF07690 Major Facilitator Superfamily VCM66_A0934 PF00672 HAMP domain VCM66_A0934 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0934 PF17200 Single Cache domain 2 VCM66_A0935 PF13654 AAA domain VCM66_A0935 PF05362 Lon protease (S16) C-terminal proteolytic domain VCM66_A0937 PF00005 ABC transporter VCM66_A0937 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_A0938 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_A0939 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0939 PF00672 HAMP domain VCM66_A0939 PF17200 Single Cache domain 2 VCM66_A0941 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0941 PF03466 LysR substrate binding domain VCM66_A0942 PF02652 L-lactate permease VCM66_A0943 PF01070 FMN-dependent dehydrogenase VCM66_A0945 PF03618 Kinase/pyrophosphorylase VCM66_A0946 PF02896 PEP-utilising enzyme, TIM barrel domain VCM66_A0946 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VCM66_A0946 PF00391 PEP-utilising enzyme, mobile domain VCM66_A0947 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0947 PF08447 PAS fold VCM66_A0948 PF01554 MatE VCM66_A0949 PF00271 Helicase conserved C-terminal domain VCM66_A0949 PF00270 DEAD/DEAH box helicase VCM66_A0950 PF03466 LysR substrate binding domain VCM66_A0950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0952 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCM66_A0955 PF00005 ABC transporter VCM66_A0955 PF00664 ABC transporter transmembrane region VCM66_A0957 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCM66_A0959 PF01810 LysE type translocator VCM66_A0960 PF12833 Helix-turn-helix domain VCM66_A0963 PF01557 Fumarylacetoacetate (FAA) hydrolase family VCM66_A0964 PF01047 MarR family VCM66_A0965 PF02566 OsmC-like protein VCM66_A0967 PF13609 Gram-negative porin VCM66_A0969 PF00892 EamA-like transporter family VCM66_A0970 PF00462 Glutaredoxin VCM66_A0971 PF07670 Nucleoside recognition VCM66_A0972 PF07670 Nucleoside recognition VCM66_A0974 PF03600 Citrate transporter VCM66_A0976 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VCM66_A0976 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VCM66_A0977 PF00730 HhH-GPD superfamily base excision DNA repair protein VCM66_A0977 PF06029 AlkA N-terminal domain VCM66_A0978 PF07681 DoxX VCM66_A0979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A0979 PF03466 LysR substrate binding domain VCM66_A0983 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VCM66_A0985 PF07148 Maltose operon periplasmic protein precursor (MalM) VCM66_A0986 PF02264 LamB porin VCM66_A0987 PF00128 Alpha amylase, catalytic domain VCM66_A0987 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCM66_A0989 PF00672 HAMP domain VCM66_A0989 PF16591 Helical bimodular sensor domain VCM66_A0989 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0992 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A0992 PF00672 HAMP domain VCM66_A0994 PF00793 DAHP synthetase I family VCM66_A0995 PF00005 ABC transporter VCM66_A0996 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0997 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCM66_A0998 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A0999 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCM66_A0999 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCM66_A0999 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCM66_A0999 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCM66_A1001 PF04225 Opacity-associated protein A LysM-like domain VCM66_A1001 PF01551 Peptidase family M23 VCM66_A1003 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCM66_A1003 PF02378 Phosphotransferase system, EIIC VCM66_A1003 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCM66_A1004 PF01232 Mannitol dehydrogenase Rossmann domain VCM66_A1004 PF08125 Mannitol dehydrogenase C-terminal domain VCM66_A1005 PF05068 Mannitol repressor VCM66_A1006 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VCM66_A1012 PF13460 NAD(P)H-binding VCM66_A1013 PF03466 LysR substrate binding domain VCM66_A1013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A1014 PF02743 Cache domain VCM66_A1014 PF00672 HAMP domain VCM66_A1014 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A1015 PF00106 short chain dehydrogenase VCM66_A1016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCM66_A1016 PF03466 LysR substrate binding domain VCM66_A1017 PF04013 Putative SAM-dependent RNA methyltransferase VCM66_A1018 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VCM66_A1020 PF13520 Amino acid permease VCM66_A1021 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCM66_A1021 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCM66_A1021 PF01276 Orn/Lys/Arg decarboxylase, major domain VCM66_A1025 PF00171 Aldehyde dehydrogenase family VCM66_A1026 PF01037 Lrp/AsnC ligand binding domain VCM66_A1027 PF02743 Cache domain VCM66_A1027 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A1027 PF00672 HAMP domain VCM66_A1029 PF00474 Sodium:solute symporter family VCM66_A1031 PF00171 Aldehyde dehydrogenase family VCM66_A1031 PF01619 Proline dehydrogenase VCM66_A1031 PF14850 DNA-binding domain of Proline dehydrogenase VCM66_A1031 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VCM66_A1032 PF12833 Helix-turn-helix domain VCM66_A1035 PF03781 Sulfatase-modifying factor enzyme 1 VCM66_A1036 PF00072 Response regulator receiver domain VCM66_A1036 PF00196 Bacterial regulatory proteins, luxR family VCM66_A1037 PF01243 Pyridoxamine 5'-phosphate oxidase VCM66_A1037 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VCM66_A1038 PF00529 HlyD membrane-fusion protein of T1SS VCM66_A1041 PF00664 ABC transporter transmembrane region VCM66_A1041 PF03412 Peptidase C39 family VCM66_A1041 PF00005 ABC transporter VCM66_A1043 PF00072 Response regulator receiver domain VCM66_A1043 PF00486 Transcriptional regulatory protein, C terminal VCM66_A1045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A1045 PF02743 Cache domain VCM66_A1045 PF00672 HAMP domain VCM66_A1046 PF01339 CheB methylesterase VCM66_A1046 PF00072 Response regulator receiver domain VCM66_A1047 PF03975 CheD chemotactic sensory transduction VCM66_A1048 PF03705 CheR methyltransferase, all-alpha domain VCM66_A1048 PF01739 CheR methyltransferase, SAM binding domain VCM66_A1049 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCM66_A1049 PF02203 Tar ligand binding domain homologue VCM66_A1049 PF00672 HAMP domain VCM66_A1050 PF01584 CheW-like domain VCM66_A1051 PF01584 CheW-like domain VCM66_A1052 PF09078 CheY binding VCM66_A1052 PF02895 Signal transducing histidine kinase, homodimeric domain VCM66_A1052 PF01584 CheW-like domain VCM66_A1052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A1052 PF01627 Hpt domain VCM66_A1053 PF00072 Response regulator receiver domain VCM66_A1056 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A1057 PF00528 Binding-protein-dependent transport system inner membrane component VCM66_A1057 PF12911 N-terminal TM domain of oligopeptide transport permease C VCM66_A1058 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCM66_A1058 PF00005 ABC transporter VCM66_A1059 PF08019 Phosphoethanolamine transferase EptA/EptB VCM66_A1059 PF00884 Sulfatase VCM66_A1061 PF08521 Two-component sensor kinase N-terminal VCM66_A1061 PF00512 His Kinase A (phospho-acceptor) domain VCM66_A1061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCM66_A1062 PF00486 Transcriptional regulatory protein, C terminal VCM66_A1062 PF00072 Response regulator receiver domain VCM66_A1066 PF00501 AMP-binding enzyme VCM66_A1068 PF05127 Helicase VCM66_A1068 PF13718 GNAT acetyltransferase 2 VCM66_A1069 PF13416 Bacterial extracellular solute-binding protein VCM66_A1070 PF08775 ParB family VCM66_A1070 PF02195 ParB-like nuclease domain VCM66_A1071 PF13614 AAA domain VCM66_A1071 PF18607 ParA helix turn helix domain