locus-tag class description VCD_000003 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_000004 PF00128 Alpha amylase, catalytic domain VCD_000005 PF01292 Prokaryotic cytochrome b561 VCD_000007 PF08220 DeoR-like helix-turn-helix domain VCD_000007 PF00455 DeoR C terminal sensor domain VCD_000008 PF03611 PTS system sugar-specific permease component VCD_000009 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCD_000010 PF00596 Class II Aldolase and Adducin N-terminal domain VCD_000012 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VCD_000013 PF01261 Xylose isomerase-like TIM barrel VCD_000016 PF00072 Response regulator receiver domain VCD_000016 PF00486 Transcriptional regulatory protein, C terminal VCD_000017 PF00672 HAMP domain VCD_000017 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000017 PF00512 His Kinase A (phospho-acceptor) domain VCD_000020 PF00871 Acetokinase family VCD_000022 PF07715 TonB-dependent Receptor Plug Domain VCD_000022 PF00593 TonB dependent receptor VCD_000023 PF12833 Helix-turn-helix domain VCD_000024 PF00005 ABC transporter VCD_000025 PF01032 FecCD transport family VCD_000026 PF01032 FecCD transport family VCD_000030 PF05547 Immune inhibitor A peptidase M6 VCD_000030 PF00801 PKD domain VCD_000031 PF03280 Proteobacterial lipase chaperone protein VCD_000032 PF00561 alpha/beta hydrolase fold VCD_000033 PF12729 Four helix bundle sensory module for signal transduction VCD_000033 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000033 PF00672 HAMP domain VCD_000034 PF07968 Leukocidin/Hemolysin toxin family VCD_000034 PF12563 Hemolytic toxin N terminal VCD_000034 PF16458 Beta-prism lectin VCD_000035 PF00657 GDSL-like Lipase/Acylhydrolase VCD_000036 PF00990 Diguanylate cyclase, GGDEF domain VCD_000036 PF08448 PAS fold VCD_000039 PF07690 Major Facilitator Superfamily VCD_000040 PF03553 Na+/H+ antiporter family VCD_000042 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_000042 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000042 PF00512 His Kinase A (phospho-acceptor) domain VCD_000043 PF11849 Domain of unknown function (DUF3369) VCD_000044 PF01467 Cytidylyltransferase-like VCD_000045 PF02540 NAD synthase VCD_000046 PF03605 Anaerobic c4-dicarboxylate membrane transporter VCD_000047 PF00271 Helicase conserved C-terminal domain VCD_000047 PF00270 DEAD/DEAH box helicase VCD_000048 PF01797 Transposase IS200 like VCD_000052 PF00145 C-5 cytosine-specific DNA methylase VCD_000053 PF00478 IMP dehydrogenase / GMP reductase domain VCD_000055 PF07885 Ion channel VCD_000057 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCD_000057 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_000058 PF01256 Carbohydrate kinase VCD_000058 PF03853 YjeF-related protein N-terminus VCD_000060 PF00072 Response regulator receiver domain VCD_000064 PF03889 Alternative ribosome-rescue factor A VCD_000065 PF00313 'Cold-shock' DNA-binding domain VCD_000066 PF00970 Oxidoreductase FAD-binding domain VCD_000066 PF00042 Globin VCD_000066 PF00175 Oxidoreductase NAD-binding domain VCD_000067 PF00158 Sigma-54 interaction domain VCD_000067 PF01590 GAF domain VCD_000070 PF01546 Peptidase family M20/M25/M40 VCD_000070 PF07687 Peptidase dimerisation domain VCD_000071 PF01773 Na+ dependent nucleoside transporter N-terminus VCD_000071 PF07662 Na+ dependent nucleoside transporter C-terminus VCD_000071 PF07670 Nucleoside recognition VCD_000074 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000074 PF02743 Cache domain VCD_000074 PF00672 HAMP domain VCD_000075 PF17863 AAA lid domain VCD_000075 PF07726 ATPase family associated with various cellular activities (AAA) VCD_000076 PF01882 Protein of unknown function DUF58 VCD_000079 PF07584 Aerotolerance regulator N-terminal VCD_000079 PF13519 von Willebrand factor type A domain VCD_000082 PF00313 'Cold-shock' DNA-binding domain VCD_000083 PF08448 PAS fold VCD_000083 PF00563 EAL domain VCD_000083 PF00990 Diguanylate cyclase, GGDEF domain VCD_000085 PF12843 Putative quorum-sensing-regulated virulence factor VCD_000086 PF01212 Beta-eliminating lyase VCD_000087 PF03222 Tryptophan/tyrosine permease family VCD_000088 PF00582 Universal stress protein family VCD_000090 PF00361 Proton-conducting membrane transporter VCD_000090 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VCD_000090 PF13244 Domain of unknown function (DUF4040) VCD_000094 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VCD_000095 PF03334 Na+/H+ antiporter subunit VCD_000097 PF01327 Polypeptide deformylase VCD_000099 PF00041 Fibronectin type III domain VCD_000099 PF12561 ToxR activated gene A lipoprotein domain VCD_000100 PF01266 FAD dependent oxidoreductase VCD_000104 PF02954 Bacterial regulatory protein, Fis family VCD_000104 PF00158 Sigma-54 interaction domain VCD_000104 PF00072 Response regulator receiver domain VCD_000105 PF02743 Cache domain VCD_000105 PF00512 His Kinase A (phospho-acceptor) domain VCD_000105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000108 PF07690 Major Facilitator Superfamily VCD_000109 PF03009 Glycerophosphoryl diester phosphodiesterase family VCD_000111 PF01048 Phosphorylase superfamily VCD_000114 PF00356 Bacterial regulatory proteins, lacI family VCD_000115 PF00294 pfkB family carbohydrate kinase VCD_000116 PF13407 Periplasmic binding protein domain VCD_000117 PF02653 Branched-chain amino acid transport system / permease component VCD_000118 PF00005 ABC transporter VCD_000119 PF05025 RbsD / FucU transport protein family VCD_000122 PF16671 Actin cross-linking domain VCD_000122 PF04717 Type VI secretion system, phage-baseplate injector VCD_000128 PF17871 AAA lid domain VCD_000128 PF07724 AAA domain (Cdc48 subfamily) VCD_000128 PF00004 ATPase family associated with various cellular activities (AAA) VCD_000128 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_000140 PF00849 RNA pseudouridylate synthase VCD_000141 PF01740 STAS domain VCD_000141 PF00916 Sulfate permease family VCD_000142 PF13419 Haloacid dehalogenase-like hydrolase VCD_000143 PF00563 EAL domain VCD_000143 PF00196 Bacterial regulatory proteins, luxR family VCD_000144 PF00581 Rhodanese-like domain VCD_000145 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VCD_000145 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VCD_000146 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VCD_000146 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VCD_000148 PF07504 Fungalysin/Thermolysin Propeptide Motif VCD_000148 PF01483 Proprotein convertase P-domain VCD_000148 PF01447 Thermolysin metallopeptidase, catalytic domain VCD_000148 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCD_000151 PF02001 Protein of unknown function DUF134 VCD_000153 PF00375 Sodium:dicarboxylate symporter family VCD_000157 PF00376 MerR family regulatory protein VCD_000157 PF09278 MerR, DNA binding VCD_000158 PF07690 Major Facilitator Superfamily VCD_000159 PF03466 LysR substrate binding domain VCD_000159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000160 PF13188 PAS domain VCD_000160 PF03707 Bacterial signalling protein N terminal repeat VCD_000160 PF00563 EAL domain VCD_000160 PF00990 Diguanylate cyclase, GGDEF domain VCD_000161 PF01476 LysM domain VCD_000161 PF08525 Opacity-associated protein A N-terminal motif VCD_000161 PF01551 Peptidase family M23 VCD_000163 PF00916 Sulfate permease family VCD_000163 PF01740 STAS domain VCD_000166 PF03707 Bacterial signalling protein N terminal repeat VCD_000166 PF00563 EAL domain VCD_000166 PF00990 Diguanylate cyclase, GGDEF domain VCD_000167 PF00005 ABC transporter VCD_000168 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000169 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000170 PF12849 PBP superfamily domain VCD_000171 PF00672 HAMP domain VCD_000171 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000171 PF12729 Four helix bundle sensory module for signal transduction VCD_000175 PF07715 TonB-dependent Receptor Plug Domain VCD_000175 PF00593 TonB dependent receptor VCD_000176 PF00326 Prolyl oligopeptidase family VCD_000176 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VCD_000177 PF00270 DEAD/DEAH box helicase VCD_000177 PF00271 Helicase conserved C-terminal domain VCD_000180 PF03734 L,D-transpeptidase catalytic domain VCD_000180 PF01476 LysM domain VCD_000180 PF17969 L,D-transpeptidase C-terminal domain VCD_000181 PF00875 DNA photolyase VCD_000181 PF03441 FAD binding domain of DNA photolyase VCD_000182 PF13411 MerR HTH family regulatory protein VCD_000183 PF08349 Protein of unknown function (DUF1722) VCD_000184 PF01048 Phosphorylase superfamily VCD_000187 PF00990 Diguanylate cyclase, GGDEF domain VCD_000188 PF11742 Protein of unknown function (DUF3302) VCD_000189 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_000189 PF00529 HlyD membrane-fusion protein of T1SS VCD_000192 PF07238 PilZ domain VCD_000192 PF12945 Flagellar protein YcgR VCD_000193 PF03616 Sodium/glutamate symporter VCD_000196 PF02630 SCO1/SenC VCD_000198 PF00375 Sodium:dicarboxylate symporter family VCD_000199 PF01569 PAP2 superfamily VCD_000203 PF00672 HAMP domain VCD_000203 PF02743 Cache domain VCD_000203 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000206 PF08329 Chitinase A, N-terminal domain VCD_000206 PF00704 Glycosyl hydrolases family 18 VCD_000207 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VCD_000208 PF00939 Sodium:sulfate symporter transmembrane region VCD_000210 PF01168 Alanine racemase, N-terminal domain VCD_000210 PF00842 Alanine racemase, C-terminal domain VCD_000210 PF01757 Acyltransferase family VCD_000215 PF16671 Actin cross-linking domain VCD_000215 PF04717 Type VI secretion system, phage-baseplate injector VCD_000216 PF05638 Type VI secretion system effector, Hcp VCD_000217 PF02806 Alpha amylase, C-terminal all-beta domain VCD_000217 PF00128 Alpha amylase, catalytic domain VCD_000217 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCD_000218 PF02446 4-alpha-glucanotransferase VCD_000219 PF00343 Carbohydrate phosphorylase VCD_000220 PF00196 Bacterial regulatory proteins, luxR family VCD_000220 PF17874 MalT-like TPR region VCD_000221 PF10928 Protein of unknown function (DUF2810) VCD_000222 PF00672 HAMP domain VCD_000222 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000222 PF17200 Single Cache domain 2 VCD_000223 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VCD_000223 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VCD_000224 PF01709 Transcriptional regulator VCD_000229 PF18607 ParA helix turn helix domain VCD_000229 PF13614 AAA domain VCD_000230 PF08775 ParB family VCD_000230 PF02195 ParB-like nuclease domain VCD_000231 PF13416 Bacterial extracellular solute-binding protein VCD_000232 PF05127 Helicase VCD_000232 PF13718 GNAT acetyltransferase 2 VCD_000234 PF00501 AMP-binding enzyme VCD_000238 PF00486 Transcriptional regulatory protein, C terminal VCD_000238 PF00072 Response regulator receiver domain VCD_000239 PF08521 Two-component sensor kinase N-terminal VCD_000239 PF00512 His Kinase A (phospho-acceptor) domain VCD_000239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000241 PF00884 Sulfatase VCD_000241 PF08019 Phosphoethanolamine transferase EptA/EptB VCD_000242 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_000242 PF00005 ABC transporter VCD_000243 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_000243 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000244 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000247 PF00072 Response regulator receiver domain VCD_000248 PF01627 Hpt domain VCD_000248 PF02895 Signal transducing histidine kinase, homodimeric domain VCD_000248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000248 PF09078 CheY binding VCD_000248 PF01584 CheW-like domain VCD_000249 PF01584 CheW-like domain VCD_000250 PF01584 CheW-like domain VCD_000251 PF00672 HAMP domain VCD_000251 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000251 PF02203 Tar ligand binding domain homologue VCD_000252 PF01739 CheR methyltransferase, SAM binding domain VCD_000252 PF03705 CheR methyltransferase, all-alpha domain VCD_000253 PF03975 CheD chemotactic sensory transduction VCD_000254 PF00072 Response regulator receiver domain VCD_000254 PF01339 CheB methylesterase VCD_000255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000255 PF00672 HAMP domain VCD_000255 PF02743 Cache domain VCD_000257 PF00486 Transcriptional regulatory protein, C terminal VCD_000257 PF00072 Response regulator receiver domain VCD_000259 PF00005 ABC transporter VCD_000259 PF03412 Peptidase C39 family VCD_000259 PF00664 ABC transporter transmembrane region VCD_000262 PF00529 HlyD membrane-fusion protein of T1SS VCD_000263 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VCD_000263 PF01243 Pyridoxamine 5'-phosphate oxidase VCD_000264 PF00072 Response regulator receiver domain VCD_000264 PF00196 Bacterial regulatory proteins, luxR family VCD_000265 PF03781 Sulfatase-modifying factor enzyme 1 VCD_000268 PF12833 Helix-turn-helix domain VCD_000269 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VCD_000269 PF14850 DNA-binding domain of Proline dehydrogenase VCD_000269 PF01619 Proline dehydrogenase VCD_000269 PF00171 Aldehyde dehydrogenase family VCD_000271 PF00474 Sodium:solute symporter family VCD_000273 PF00672 HAMP domain VCD_000273 PF02743 Cache domain VCD_000273 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000274 PF01037 Lrp/AsnC ligand binding domain VCD_000275 PF00171 Aldehyde dehydrogenase family VCD_000277 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCD_000277 PF01276 Orn/Lys/Arg decarboxylase, major domain VCD_000277 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCD_000278 PF13520 Amino acid permease VCD_000280 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VCD_000281 PF04013 Putative SAM-dependent RNA methyltransferase VCD_000282 PF03466 LysR substrate binding domain VCD_000282 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000283 PF00106 short chain dehydrogenase VCD_000284 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000284 PF02743 Cache domain VCD_000284 PF00672 HAMP domain VCD_000285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000285 PF03466 LysR substrate binding domain VCD_000286 PF13460 NAD(P)H-binding VCD_000292 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VCD_000293 PF05068 Mannitol repressor VCD_000294 PF01232 Mannitol dehydrogenase Rossmann domain VCD_000294 PF08125 Mannitol dehydrogenase C-terminal domain VCD_000295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCD_000295 PF02378 Phosphotransferase system, EIIC VCD_000295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCD_000297 PF01551 Peptidase family M23 VCD_000297 PF04225 Opacity-associated protein A LysM-like domain VCD_000299 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_000299 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_000299 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_000299 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_000300 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000301 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_000302 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000303 PF00005 ABC transporter VCD_000304 PF00793 DAHP synthetase I family VCD_000306 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000306 PF00672 HAMP domain VCD_000310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000310 PF12729 Four helix bundle sensory module for signal transduction VCD_000310 PF00672 HAMP domain VCD_000312 PF00128 Alpha amylase, catalytic domain VCD_000312 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCD_000313 PF02264 LamB porin VCD_000314 PF07148 Maltose operon periplasmic protein precursor (MalM) VCD_000316 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VCD_000320 PF03466 LysR substrate binding domain VCD_000320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000321 PF07681 DoxX VCD_000322 PF00730 HhH-GPD superfamily base excision DNA repair protein VCD_000322 PF06029 AlkA N-terminal domain VCD_000323 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VCD_000323 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VCD_000325 PF03600 Citrate transporter VCD_000326 PF07670 Nucleoside recognition VCD_000327 PF07670 Nucleoside recognition VCD_000328 PF00462 Glutaredoxin VCD_000329 PF00892 EamA-like transporter family VCD_000330 PF13609 Gram-negative porin VCD_000332 PF02566 OsmC-like protein VCD_000333 PF01047 MarR family VCD_000334 PF01557 Fumarylacetoacetate (FAA) hydrolase family VCD_000337 PF12833 Helix-turn-helix domain VCD_000338 PF01810 LysE type translocator VCD_000340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCD_000342 PF00664 ABC transporter transmembrane region VCD_000342 PF00005 ABC transporter VCD_000345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCD_000347 PF03466 LysR substrate binding domain VCD_000347 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000348 PF00271 Helicase conserved C-terminal domain VCD_000348 PF00270 DEAD/DEAH box helicase VCD_000349 PF01554 MatE VCD_000350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000350 PF08447 PAS fold VCD_000351 PF00391 PEP-utilising enzyme, mobile domain VCD_000351 PF02896 PEP-utilising enzyme, TIM barrel domain VCD_000351 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VCD_000352 PF03618 Kinase/pyrophosphorylase VCD_000354 PF01070 FMN-dependent dehydrogenase VCD_000355 PF02652 L-lactate permease VCD_000356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000356 PF03466 LysR substrate binding domain VCD_000360 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_000361 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_000361 PF00005 ABC transporter VCD_000363 PF13654 AAA domain VCD_000363 PF05362 Lon protease (S16) C-terminal proteolytic domain VCD_000364 PF00672 HAMP domain VCD_000364 PF17200 Single Cache domain 2 VCD_000364 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000365 PF07690 Major Facilitator Superfamily VCD_000367 PF06865 Pyrimidine/purine nucleoside phosphorylase VCD_000368 PF02678 Pirin VCD_000368 PF05726 Pirin C-terminal cupin domain VCD_000370 PF00563 EAL domain VCD_000370 PF00990 Diguanylate cyclase, GGDEF domain VCD_000371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000371 PF03466 LysR substrate binding domain VCD_000375 PF03707 Bacterial signalling protein N terminal repeat VCD_000375 PF00990 Diguanylate cyclase, GGDEF domain VCD_000375 PF00563 EAL domain VCD_000378 PF00990 Diguanylate cyclase, GGDEF domain VCD_000379 PF01047 MarR family VCD_000380 PF00072 Response regulator receiver domain VCD_000380 PF01584 CheW-like domain VCD_000383 PF00196 Bacterial regulatory proteins, luxR family VCD_000384 PF01906 Putative heavy-metal-binding VCD_000387 PF13302 Acetyltransferase (GNAT) domain VCD_000388 PF00005 ABC transporter VCD_000388 PF08402 TOBE domain VCD_000389 PF01547 Bacterial extracellular solute-binding protein VCD_000390 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000390 PF14785 Maltose transport system permease protein MalF P2 domain VCD_000391 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000394 PF08220 DeoR-like helix-turn-helix domain VCD_000394 PF00455 DeoR C terminal sensor domain VCD_000395 PF08448 PAS fold VCD_000395 PF00990 Diguanylate cyclase, GGDEF domain VCD_000397 PF12833 Helix-turn-helix domain VCD_000397 PF00072 Response regulator receiver domain VCD_000400 PF00313 'Cold-shock' DNA-binding domain VCD_000402 PF05661 Protein of unknown function (DUF808) VCD_000403 PF05958 tRNA (Uracil-5-)-methyltransferase VCD_000405 PF05656 Protein of unknown function (DUF805) VCD_000407 PF01979 Amidohydrolase family VCD_000408 PF03473 MOSC domain VCD_000408 PF03476 MOSC N-terminal beta barrel domain VCD_000408 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_000408 PF03476 MOSC N-terminal beta barrel domain VCD_000408 PF03473 MOSC domain VCD_000408 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_000409 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000409 PF00672 HAMP domain VCD_000409 PF02743 Cache domain VCD_000416 PF00005 ABC transporter VCD_000417 PF01032 FecCD transport family VCD_000418 PF01497 Periplasmic binding protein VCD_000419 PF02472 Biopolymer transport protein ExbD/TolR VCD_000420 PF01618 MotA/TolQ/ExbB proton channel family VCD_000421 PF03544 Gram-negative bacterial TonB protein C-terminal VCD_000422 PF04055 Radical SAM superfamily VCD_000423 PF06228 Haem utilisation ChuX/HutX VCD_000424 PF01243 Pyridoxamine 5'-phosphate oxidase VCD_000425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000425 PF00672 HAMP domain VCD_000426 PF05651 Putative sugar diacid recognition VCD_000426 PF17853 GGDEF-like domain VCD_000426 PF13556 PucR C-terminal helix-turn-helix domain VCD_000427 PF02447 GntP family permease VCD_000428 PF02595 Glycerate kinase family VCD_000433 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VCD_000433 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VCD_000434 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VCD_000435 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VCD_000435 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VCD_000436 PF01966 HD domain VCD_000441 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_000442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000442 PF03466 LysR substrate binding domain VCD_000447 PF00155 Aminotransferase class I and II VCD_000448 PF08240 Alcohol dehydrogenase GroES-like domain VCD_000448 PF00107 Zinc-binding dehydrogenase VCD_000457 PF03466 LysR substrate binding domain VCD_000457 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000458 PF00291 Pyridoxal-phosphate dependent enzyme VCD_000460 PF02322 Cytochrome bd terminal oxidase subunit II VCD_000461 PF01654 Cytochrome bd terminal oxidase subunit I VCD_000462 PF00155 Aminotransferase class I and II VCD_000462 PF00392 Bacterial regulatory proteins, gntR family VCD_000463 PF00768 D-alanyl-D-alanine carboxypeptidase VCD_000465 PF03922 OmpW family VCD_000466 PF07504 Fungalysin/Thermolysin Propeptide Motif VCD_000466 PF03413 Peptidase propeptide and YPEB domain VCD_000466 PF01447 Thermolysin metallopeptidase, catalytic domain VCD_000466 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCD_000466 PF04151 Bacterial pre-peptidase C-terminal domain VCD_000467 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000467 PF08447 PAS fold VCD_000467 PF13426 PAS domain VCD_000468 PF12262 Bacterial virulence factor lipase N-terminal VCD_000469 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCD_000470 PF00128 Alpha amylase, catalytic domain VCD_000471 PF00248 Aldo/keto reductase family VCD_000474 PF00005 ABC transporter VCD_000475 PF12704 MacB-like periplasmic core domain VCD_000475 PF02687 FtsX-like permease family VCD_000475 PF00005 ABC transporter VCD_000478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000478 PF07694 5TMR of 5TMR-LYT VCD_000478 PF13492 GAF domain VCD_000478 PF06580 Histidine kinase VCD_000479 PF04397 LytTr DNA-binding domain VCD_000479 PF00072 Response regulator receiver domain VCD_000481 PF00990 Diguanylate cyclase, GGDEF domain VCD_000482 PF13520 Amino acid permease VCD_000485 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_000485 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCD_000487 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_000488 PF02566 OsmC-like protein VCD_000489 PF00571 CBS domain VCD_000489 PF03471 Transporter associated domain VCD_000489 PF01595 Cyclin M transmembrane N-terminal domain VCD_000490 PF14602 Hexapeptide repeat of succinyl-transferase VCD_000490 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_000490 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VCD_000491 PF00892 EamA-like transporter family VCD_000493 PF03466 LysR substrate binding domain VCD_000493 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000496 PF13193 AMP-binding enzyme C-terminal domain VCD_000496 PF00501 AMP-binding enzyme VCD_000497 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VCD_000498 PF01329 Pterin 4 alpha carbinolamine dehydratase VCD_000499 PF00583 Acetyltransferase (GNAT) family VCD_000500 PF00202 Aminotransferase class-III VCD_000501 PF06339 Ectoine synthase VCD_000502 PF00696 Amino acid kinase family VCD_000502 PF13840 ACT domain VCD_000504 PF00118 TCP-1/cpn60 chaperonin family VCD_000505 PF00166 Chaperonin 10 Kd subunit VCD_000506 PF03448 MgtE intracellular N domain VCD_000506 PF00571 CBS domain VCD_000506 PF01769 Divalent cation transporter VCD_000509 PF17810 Arginine decarboxylase helical bundle domain VCD_000509 PF17944 Arginine decarboxylase C-terminal helical extension VCD_000509 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VCD_000510 PF00491 Arginase family VCD_000511 PF04151 Bacterial pre-peptidase C-terminal domain VCD_000511 PF04389 Peptidase family M28 VCD_000512 PF07504 Fungalysin/Thermolysin Propeptide Motif VCD_000512 PF02868 Thermolysin metallopeptidase, alpha-helical domain VCD_000512 PF03413 Peptidase propeptide and YPEB domain VCD_000512 PF04151 Bacterial pre-peptidase C-terminal domain VCD_000512 PF01447 Thermolysin metallopeptidase, catalytic domain VCD_000513 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VCD_000513 PF18416 N-acetylglucosamine binding protein domain 2 VCD_000514 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VCD_000515 PF01575 MaoC like domain VCD_000516 PF12849 PBP superfamily domain VCD_000518 PF00773 RNB domain VCD_000518 PF08206 Ribonuclease B OB domain VCD_000518 PF00575 S1 RNA binding domain VCD_000519 PF03880 DbpA RNA binding domain VCD_000519 PF00270 DEAD/DEAH box helicase VCD_000519 PF00271 Helicase conserved C-terminal domain VCD_000521 PF00884 Sulfatase VCD_000522 PF00294 pfkB family carbohydrate kinase VCD_000525 PF13419 Haloacid dehalogenase-like hydrolase VCD_000527 PF02796 Helix-turn-helix domain of resolvase VCD_000527 PF00239 Resolvase, N terminal domain VCD_000530 PF01527 Transposase VCD_000531 PF00665 Integrase core domain VCD_000534 PF00226 DnaJ domain VCD_000534 PF00684 DnaJ central domain VCD_000534 PF01556 DnaJ C terminal domain VCD_000537 PF00990 Diguanylate cyclase, GGDEF domain VCD_000537 PF00498 FHA domain VCD_000537 PF00563 EAL domain VCD_000538 PF07055 Enoyl reductase FAD binding domain VCD_000538 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VCD_000538 PF12241 Trans-2-enoyl-CoA reductase catalytic region VCD_000539 PF13472 GDSL-like Lipase/Acylhydrolase family VCD_000540 PF00005 ABC transporter VCD_000542 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VCD_000542 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VCD_000544 PF02626 Carboxyltransferase domain, subdomain A and B VCD_000546 PF03746 LamB/YcsF family VCD_000547 PF16363 GDP-mannose 4,6 dehydratase VCD_000548 PF12729 Four helix bundle sensory module for signal transduction VCD_000548 PF00672 HAMP domain VCD_000548 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000549 PF03222 Tryptophan/tyrosine permease family VCD_000551 PF04336 Acyl carrier protein phosphodiesterase VCD_000552 PF00271 Helicase conserved C-terminal domain VCD_000552 PF00270 DEAD/DEAH box helicase VCD_000553 PF08361 MAATS-type transcriptional repressor, C-terminal region VCD_000553 PF00440 Bacterial regulatory proteins, tetR family VCD_000554 PF00034 Cytochrome c VCD_000555 PF01212 Beta-eliminating lyase VCD_000556 PF00293 NUDIX domain VCD_000557 PF17868 AAA lid domain VCD_000557 PF12592 Protein of unknown function (DUF3763) VCD_000557 PF07728 AAA domain (dynein-related subfamily) VCD_000558 PF05762 VWA domain containing CoxE-like protein VCD_000560 PF00005 ABC transporter VCD_000561 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_000562 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000563 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000564 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000564 PF03466 LysR substrate binding domain VCD_000567 PF07690 Major Facilitator Superfamily VCD_000568 PF00085 Thioredoxin VCD_000569 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VCD_000569 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VCD_000570 PF13183 4Fe-4S dicluster domain VCD_000570 PF02754 Cysteine-rich domain VCD_000571 PF00890 FAD binding domain VCD_000572 PF04324 BFD-like [2Fe-2S] binding domain VCD_000572 PF01266 FAD dependent oxidoreductase VCD_000574 PF00230 Major intrinsic protein VCD_000575 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VCD_000575 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VCD_000578 PF04363 Protein of unknown function (DUF496) VCD_000580 PF04337 Protein of unknown function, DUF480 VCD_000581 PF01541 GIY-YIG catalytic domain VCD_000583 PF13407 Periplasmic binding protein domain VCD_000584 PF00072 Response regulator receiver domain VCD_000584 PF09308 LuxQ, periplasmic VCD_000584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000584 PF00512 His Kinase A (phospho-acceptor) domain VCD_000592 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VCD_000592 PF07685 CobB/CobQ-like glutamine amidotransferase domain VCD_000594 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000595 PF00005 ABC transporter VCD_000595 PF03459 TOBE domain VCD_000600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000600 PF00072 Response regulator receiver domain VCD_000600 PF00512 His Kinase A (phospho-acceptor) domain VCD_000600 PF08448 PAS fold VCD_000600 PF13188 PAS domain VCD_000601 PF12805 FUSC-like inner membrane protein yccS VCD_000602 PF12462 DNA helicase IV / RNA helicase N terminal VCD_000602 PF00580 UvrD/REP helicase N-terminal domain VCD_000602 PF13361 UvrD-like helicase C-terminal domain VCD_000605 PF01219 Prokaryotic diacylglycerol kinase VCD_000607 PF00857 Isochorismatase family VCD_000608 PF02142 MGS-like domain VCD_000609 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCD_000610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000610 PF00512 His Kinase A (phospho-acceptor) domain VCD_000610 PF01627 Hpt domain VCD_000610 PF00672 HAMP domain VCD_000610 PF00072 Response regulator receiver domain VCD_000611 PF00224 Pyruvate kinase, barrel domain VCD_000611 PF02887 Pyruvate kinase, alpha/beta domain VCD_000612 PF07690 Major Facilitator Superfamily VCD_000614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000614 PF02743 Cache domain VCD_000614 PF00512 His Kinase A (phospho-acceptor) domain VCD_000615 PF14532 Sigma-54 interaction domain VCD_000615 PF02954 Bacterial regulatory protein, Fis family VCD_000615 PF00072 Response regulator receiver domain VCD_000617 PF00465 Iron-containing alcohol dehydrogenase VCD_000618 PF06483 Chitinase C VCD_000618 PF00704 Glycosyl hydrolases family 18 VCD_000619 PF00483 Nucleotidyl transferase VCD_000620 PF00990 Diguanylate cyclase, GGDEF domain VCD_000620 PF17158 Membrane-associated sensor, integral membrane domain VCD_000629 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_000632 PF07549 SecD/SecF GG Motif VCD_000632 PF13721 SecD export protein N-terminal TM region VCD_000632 PF02355 Protein export membrane protein VCD_000633 PF07549 SecD/SecF GG Motif VCD_000633 PF02355 Protein export membrane protein VCD_000634 PF00106 short chain dehydrogenase VCD_000635 PF00108 Thiolase, N-terminal domain VCD_000635 PF02803 Thiolase, C-terminal domain VCD_000637 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VCD_000638 PF08402 TOBE domain VCD_000638 PF00005 ABC transporter VCD_000639 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000641 PF07690 Major Facilitator Superfamily VCD_000642 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000642 PF07730 Histidine kinase VCD_000642 PF05231 MASE1 VCD_000643 PF00072 Response regulator receiver domain VCD_000643 PF00196 Bacterial regulatory proteins, luxR family VCD_000644 PF01966 HD domain VCD_000646 PF03264 NapC/NirT cytochrome c family, N-terminal region VCD_000647 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VCD_000648 PF00384 Molybdopterin oxidoreductase VCD_000648 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VCD_000648 PF01568 Molydopterin dinucleotide binding domain VCD_000650 PF12838 4Fe-4S dicluster domain VCD_000650 PF13187 4Fe-4S dicluster domain VCD_000651 PF00672 HAMP domain VCD_000651 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000651 PF07730 Histidine kinase VCD_000651 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VCD_000652 PF00072 Response regulator receiver domain VCD_000652 PF00196 Bacterial regulatory proteins, luxR family VCD_000653 PF00356 Bacterial regulatory proteins, lacI family VCD_000657 PF00474 Sodium:solute symporter family VCD_000658 PF03313 Serine dehydratase alpha chain VCD_000658 PF03315 Serine dehydratase beta chain VCD_000659 PF03606 C4-dicarboxylate anaerobic carrier VCD_000660 PF00672 HAMP domain VCD_000660 PF12729 Four helix bundle sensory module for signal transduction VCD_000660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000661 PF13419 Haloacid dehalogenase-like hydrolase VCD_000662 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_000662 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCD_000663 PF00691 OmpA family VCD_000663 PF13488 Glycine zipper VCD_000664 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_000664 PF00672 HAMP domain VCD_000665 PF01266 FAD dependent oxidoreductase VCD_000665 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VCD_000666 PF00294 pfkB family carbohydrate kinase VCD_000667 PF08244 Glycosyl hydrolases family 32 C terminal VCD_000667 PF00251 Glycosyl hydrolases family 32 N-terminal domain VCD_000669 PF02378 Phosphotransferase system, EIIC VCD_000669 PF00367 phosphotransferase system, EIIB VCD_000678 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_000678 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_000681 PF04143 Sulphur transport VCD_000684 PF00873 AcrB/AcrD/AcrF family VCD_000685 PF00881 Nitroreductase family VCD_000686 PF03992 Antibiotic biosynthesis monooxygenase VCD_000687 PF03466 LysR substrate binding domain VCD_000687 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000689 PF06942 GlpM protein VCD_000692 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_000692 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCD_000694 PF07516 SecA Wing and Scaffold domain VCD_000694 PF01043 SecA preprotein cross-linking domain VCD_000694 PF07517 SecA DEAD-like domain VCD_000694 PF02810 SEC-C motif VCD_000697 PF00456 Transketolase, thiamine diphosphate binding domain VCD_000697 PF02780 Transketolase, C-terminal domain VCD_000697 PF02779 Transketolase, pyrimidine binding domain VCD_000698 PF00923 Transaldolase/Fructose-6-phosphate aldolase VCD_000700 PF04198 Putative sugar-binding domain VCD_000701 PF00581 Rhodanese-like domain VCD_000703 PF00899 ThiF family VCD_000704 PF03453 MoeA N-terminal region (domain I and II) VCD_000704 PF00994 Probable molybdopterin binding domain VCD_000704 PF03454 MoeA C-terminal region (domain IV) VCD_000705 PF01227 GTP cyclohydrolase I VCD_000706 PF01625 Peptide methionine sulfoxide reductase VCD_000706 PF01641 SelR domain VCD_000707 PF01268 Formate--tetrahydrofolate ligase VCD_000708 PF01741 Large-conductance mechanosensitive channel, MscL VCD_000711 PF13419 Haloacid dehalogenase-like hydrolase VCD_000712 PF01272 Transcription elongation factor, GreA/GreB, C-term VCD_000712 PF14760 Rnk N-terminus VCD_000713 PF13419 Haloacid dehalogenase-like hydrolase VCD_000715 PF00266 Aminotransferase class-V VCD_000717 PF00005 ABC transporter VCD_000718 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000719 PF07702 UTRA domain VCD_000719 PF00392 Bacterial regulatory proteins, gntR family VCD_000721 PF00854 POT family VCD_000726 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_000727 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000728 PF00528 Binding-protein-dependent transport system inner membrane component VCD_000728 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_000729 PF00005 ABC transporter VCD_000729 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_000730 PF03479 Plants and Prokaryotes Conserved (PCC) domain VCD_000730 PF12804 MobA-like NTP transferase domain VCD_000730 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_000733 PF00043 Glutathione S-transferase, C-terminal domain VCD_000733 PF02798 Glutathione S-transferase, N-terminal domain VCD_000738 PF03061 Thioesterase superfamily VCD_000741 PF12793 Sugar transport-related sRNA regulator N-term VCD_000741 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_000742 PF07715 TonB-dependent Receptor Plug Domain VCD_000742 PF00593 TonB dependent receptor VCD_000743 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000743 PF03466 LysR substrate binding domain VCD_000744 PF13380 CoA binding domain VCD_000744 PF00583 Acetyltransferase (GNAT) family VCD_000744 PF13607 Succinyl-CoA ligase like flavodoxin domain VCD_000746 PF07478 D-ala D-ala ligase C-terminus VCD_000746 PF01820 D-ala D-ala ligase N-terminus VCD_000748 PF01253 Translation initiation factor SUI1 VCD_000749 PF01376 Heat-labile enterotoxin beta chain VCD_000750 PF01375 Heat-labile enterotoxin alpha chain VCD_000751 PF05707 Zonular occludens toxin (Zot) VCD_000752 PF10734 Protein of unknown function (DUF2523) VCD_000753 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII VCD_000757 PF01381 Helix-turn-helix VCD_000759 PF03701 Uncharacterised protein family (UPF0181) VCD_000762 PF00486 Transcriptional regulatory protein, C terminal VCD_000762 PF00072 Response regulator receiver domain VCD_000764 PF02233 NAD(P) transhydrogenase beta subunit VCD_000765 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VCD_000765 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VCD_000765 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VCD_000768 PF17158 Membrane-associated sensor, integral membrane domain VCD_000768 PF00990 Diguanylate cyclase, GGDEF domain VCD_000771 PF00990 Diguanylate cyclase, GGDEF domain VCD_000771 PF17151 Periplasmic sensor domain VCD_000778 PF03831 PhnA domain VCD_000778 PF08274 PhnA Zinc-Ribbon VCD_000781 PF03741 Integral membrane protein TerC family VCD_000782 PF00149 Calcineurin-like phosphoesterase VCD_000782 PF02872 5'-nucleotidase, C-terminal domain VCD_000783 PF11398 Protein of unknown function (DUF2813) VCD_000784 PF06496 Protein of unknown function (DUF1097) VCD_000785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_000785 PF03466 LysR substrate binding domain VCD_000787 PF01226 Formate/nitrite transporter VCD_000788 PF04264 YceI-like domain VCD_000789 PF01292 Prokaryotic cytochrome b561 VCD_000791 PF10388 EAL-domain associated signalling protein domain VCD_000791 PF00563 EAL domain VCD_000794 PF09335 SNARE associated Golgi protein VCD_000795 PF02416 mttA/Hcf106 family VCD_000796 PF00072 Response regulator receiver domain VCD_000796 PF00486 Transcriptional regulatory protein, C terminal VCD_000797 PF02702 Osmosensitive K+ channel His kinase sensor domain VCD_000797 PF00512 His Kinase A (phospho-acceptor) domain VCD_000797 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000797 PF13493 Domain of unknown function (DUF4118) VCD_000798 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg VCD_000798 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_000798 PF10371 Domain of unknown function VCD_000798 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II VCD_000798 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase VCD_000799 PF02705 K+ potassium transporter VCD_000800 PF01926 50S ribosome-binding GTPase VCD_000801 PF07683 Cobalamin synthesis protein cobW C-terminal domain VCD_000801 PF02492 CobW/HypB/UreG, nucleotide-binding domain VCD_000802 PF00654 Voltage gated chloride channel VCD_000804 PF00155 Aminotransferase class I and II VCD_000805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_000805 PF00072 Response regulator receiver domain VCD_000806 PF13476 AAA domain VCD_000807 PF00149 Calcineurin-like phosphoesterase VCD_000807 PF12320 Type 5 capsule protein repressor C-terminal domain VCD_000808 PF00356 Bacterial regulatory proteins, lacI family VCD_000808 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCD_000809 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCD_000809 PF00381 PTS HPr component phosphorylation site VCD_000810 PF00294 pfkB family carbohydrate kinase VCD_000811 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCD_000811 PF02378 Phosphotransferase system, EIIC VCD_000813 PF18030 RimK PreATP-grasp domain VCD_000813 PF08443 RimK-like ATP-grasp domain VCD_000814 PF00155 Aminotransferase class I and II VCD_000816 PF13597 Anaerobic ribonucleoside-triphosphate reductase VCD_000816 PF03477 ATP cone domain VCD_000818 PF00665 Integrase core domain VCD_000819 PF01527 Transposase VCD_000820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_000832 PF01797 Transposase IS200 like VCD_000849 PF07859 alpha/beta hydrolase fold VCD_000861 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VCD_000863 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_000866 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_000867 PF01609 Transposase DDE domain VCD_000867 PF05598 Transposase domain (DUF772) VCD_000869 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VCD_000870 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VCD_000873 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_000885 PF01555 DNA methylase VCD_000888 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VCD_000889 PF08212 Lipocalin-like domain VCD_000892 PF17676 LD-carboxypeptidase C-terminal domain VCD_000892 PF02016 LD-carboxypeptidase N-terminal domain VCD_000895 PF01381 Helix-turn-helix VCD_000896 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB VCD_000917 PF01527 Transposase VCD_000918 PF00665 Integrase core domain VCD_000930 PF01810 LysE type translocator VCD_000931 PF04229 GrpB protein VCD_000933 PF08212 Lipocalin-like domain VCD_000936 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_000941 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_000944 PF17676 LD-carboxypeptidase C-terminal domain VCD_000944 PF02016 LD-carboxypeptidase N-terminal domain VCD_000952 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_000963 PF08212 Lipocalin-like domain VCD_000964 PF13302 Acetyltransferase (GNAT) domain VCD_000966 PF00293 NUDIX domain VCD_000970 PF01966 HD domain VCD_000970 PF13286 Phosphohydrolase-associated domain VCD_000980 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_000984 PF00589 Phage integrase family VCD_000984 PF13495 Phage integrase, N-terminal SAM-like domain VCD_000985 PF00453 Ribosomal protein L20 VCD_000986 PF01632 Ribosomal protein L35 VCD_000987 PF00707 Translation initiation factor IF-3, C-terminal domain VCD_000987 PF05198 Translation initiation factor IF-3, N-terminal domain VCD_000988 PF03129 Anticodon binding domain VCD_000988 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VCD_000988 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCD_000988 PF02824 TGS domain VCD_000992 PF05598 Transposase domain (DUF772) VCD_000992 PF01609 Transposase DDE domain VCD_000994 PF08669 Glycine cleavage T-protein C-terminal barrel domain VCD_000994 PF01571 Aminomethyltransferase folate-binding domain VCD_000996 PF00464 Serine hydroxymethyltransferase VCD_000997 PF01597 Glycine cleavage H-protein VCD_000998 PF02347 Glycine cleavage system P-protein VCD_000999 PF01797 Transposase IS200 like VCD_001000 PF00194 Eukaryotic-type carbonic anhydrase VCD_001003 PF07943 Penicillin-binding protein 5, C-terminal domain VCD_001003 PF00768 D-alanyl-D-alanine carboxypeptidase VCD_001005 PF00672 HAMP domain VCD_001005 PF02743 Cache domain VCD_001005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_001006 PF07690 Major Facilitator Superfamily VCD_001015 PF13426 PAS domain VCD_001015 PF14827 Double sensory domain of two-component sensor kinase VCD_001015 PF00672 HAMP domain VCD_001015 PF00512 His Kinase A (phospho-acceptor) domain VCD_001015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001016 PF00486 Transcriptional regulatory protein, C terminal VCD_001016 PF00072 Response regulator receiver domain VCD_001018 PF02548 Ketopantoate hydroxymethyltransferase VCD_001019 PF02569 Pantoate-beta-alanine ligase VCD_001020 PF01061 ABC-2 type transporter VCD_001021 PF00005 ABC transporter VCD_001022 PF01740 STAS domain VCD_001022 PF00916 Sulfate permease family VCD_001023 PF00484 Carbonic anhydrase VCD_001024 PF00156 Phosphoribosyl transferase domain VCD_001025 PF00440 Bacterial regulatory proteins, tetR family VCD_001026 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCD_001027 PF04348 LppC putative lipoprotein VCD_001028 PF02021 Uncharacterised protein family UPF0102 VCD_001029 PF13580 SIS domain VCD_001030 PF04972 BON domain VCD_001031 PF04386 Stringent starvation protein B VCD_001032 PF00043 Glutathione S-transferase, C-terminal domain VCD_001032 PF02798 Glutathione S-transferase, N-terminal domain VCD_001033 PF02167 Cytochrome C1 family VCD_001034 PF00033 Cytochrome b/b6/petB VCD_001034 PF00032 Cytochrome b(C-terminal)/b6/petD VCD_001035 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VCD_001035 PF00355 Rieske [2Fe-2S] domain VCD_001036 PF00380 Ribosomal protein S9/S16 VCD_001037 PF00572 Ribosomal protein L13 VCD_001038 PF03969 AFG1-like ATPase VCD_001040 PF00595 PDZ domain VCD_001041 PF13180 PDZ domain VCD_001042 PF01245 Ribosomal protein L19 VCD_001043 PF01746 tRNA (Guanine-1)-methyltransferase VCD_001044 PF05239 PRC-barrel domain VCD_001044 PF01782 RimM N-terminal domain VCD_001045 PF00886 Ribosomal protein S16 VCD_001046 PF02978 Signal peptide binding domain VCD_001046 PF02881 SRP54-type protein, helical bundle domain VCD_001046 PF00448 SRP54-type protein, GTPase domain VCD_001047 PF01578 Cytochrome C assembly protein VCD_001048 PF01595 Cyclin M transmembrane N-terminal domain VCD_001048 PF03471 Transporter associated domain VCD_001048 PF00571 CBS domain VCD_001049 PF02664 S-Ribosylhomocysteinase (LuxS) VCD_001050 PF04262 Glutamate-cysteine ligase VCD_001051 PF00675 Insulinase (Peptidase family M16) VCD_001051 PF05193 Peptidase M16 inactive domain VCD_001052 PF09335 SNARE associated Golgi protein VCD_001054 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCD_001055 PF00682 HMGL-like VCD_001055 PF02436 Conserved carboxylase domain VCD_001055 PF00364 Biotin-requiring enzyme VCD_001056 PF04277 Oxaloacetate decarboxylase, gamma chain VCD_001057 PF02599 Global regulator protein family VCD_001058 PF00696 Amino acid kinase family VCD_001058 PF01842 ACT domain VCD_001058 PF13840 ACT domain VCD_001060 PF02272 DHHA1 domain VCD_001060 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VCD_001060 PF01411 tRNA synthetases class II (A) VCD_001061 PF02631 RecX family VCD_001062 PF00154 recA bacterial DNA recombination protein VCD_001063 PF02464 Competence-damaged protein VCD_001064 PF00005 ABC transporter VCD_001064 PF12857 TOBE-like domain VCD_001065 PF00528 Binding-protein-dependent transport system inner membrane component VCD_001066 PF00528 Binding-protein-dependent transport system inner membrane component VCD_001069 PF00291 Pyridoxal-phosphate dependent enzyme VCD_001070 PF01624 MutS domain I VCD_001070 PF05188 MutS domain II VCD_001070 PF00488 MutS domain V VCD_001070 PF05192 MutS domain III VCD_001070 PF05190 MutS family domain IV VCD_001071 PF04545 Sigma-70, region 4 VCD_001071 PF04539 Sigma-70 region 3 VCD_001071 PF00140 Sigma-70 factor, region 1.2 VCD_001071 PF04542 Sigma-70 region 2 VCD_001072 PF01551 Peptidase family M23 VCD_001072 PF01476 LysM domain VCD_001074 PF01975 Survival protein SurE VCD_001075 PF01142 tRNA pseudouridine synthase D (TruD) VCD_001076 PF02542 YgbB family VCD_001077 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VCD_001078 PF04977 Septum formation initiator VCD_001079 PF02673 Bacitracin resistance protein BacA VCD_001080 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCD_001081 PF02152 Dihydroneopterin aldolase VCD_001082 PF02660 Glycerol-3-phosphate acyltransferase VCD_001083 PF00561 alpha/beta hydrolase fold VCD_001084 PF00814 Glycoprotease family VCD_001085 PF01165 Ribosomal protein S21 VCD_001086 PF09424 Yqey-like protein VCD_001087 PF08275 DNA primase catalytic core, N-terminal domain VCD_001087 PF08278 DNA primase DnaG DnaB-binding VCD_001087 PF01807 CHC2 zinc finger VCD_001087 PF10410 DnaB-helicase binding domain of primase VCD_001088 PF04539 Sigma-70 region 3 VCD_001088 PF00140 Sigma-70 factor, region 1.2 VCD_001088 PF04545 Sigma-70, region 4 VCD_001088 PF04542 Sigma-70 region 2 VCD_001088 PF04546 Sigma-70, non-essential region VCD_001088 PF03979 Sigma-70 factor, region 1.1 VCD_001089 PF13356 Arm DNA-binding domain VCD_001089 PF00589 Phage integrase family VCD_001090 PF08668 HDOD domain VCD_001090 PF00563 EAL domain VCD_001091 PF00672 HAMP domain VCD_001091 PF02743 Cache domain VCD_001091 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_001092 PF12833 Helix-turn-helix domain VCD_001093 PF08447 PAS fold VCD_001093 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_001095 PF04002 RadC-like JAB domain VCD_001102 PF01551 Peptidase family M23 VCD_001102 PF01476 LysM domain VCD_001102 PF08525 Opacity-associated protein A N-terminal motif VCD_001103 PF13737 Transposase DDE domain VCD_001104 PF13737 Transposase DDE domain VCD_001109 PF00075 RNase H VCD_001118 PF03480 Bacterial extracellular solute-binding protein, family 7 VCD_001119 PF01380 SIS domain VCD_001120 PF00455 DeoR C terminal sensor domain VCD_001120 PF08220 DeoR-like helix-turn-helix domain VCD_001121 PF02887 Pyruvate kinase, alpha/beta domain VCD_001121 PF00224 Pyruvate kinase, barrel domain VCD_001122 PF04402 Protein of unknown function (DUF541) VCD_001123 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_001123 PF03466 LysR substrate binding domain VCD_001124 PF01810 LysE type translocator VCD_001125 PF05552 Conserved TM helix VCD_001125 PF00924 Mechanosensitive ion channel VCD_001127 PF01116 Fructose-bisphosphate aldolase class-II VCD_001128 PF00162 Phosphoglycerate kinase VCD_001129 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCD_001129 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_001130 PF07715 TonB-dependent Receptor Plug Domain VCD_001130 PF00593 TonB dependent receptor VCD_001131 PF03466 LysR substrate binding domain VCD_001131 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_001133 PF00456 Transketolase, thiamine diphosphate binding domain VCD_001133 PF02779 Transketolase, pyrimidine binding domain VCD_001133 PF02780 Transketolase, C-terminal domain VCD_001134 PF02772 S-adenosylmethionine synthetase, central domain VCD_001134 PF00438 S-adenosylmethionine synthetase, N-terminal domain VCD_001134 PF02773 S-adenosylmethionine synthetase, C-terminal domain VCD_001135 PF10263 SprT-like family VCD_001135 PF17283 SprT-like zinc ribbon domain VCD_001136 PF04231 Endonuclease I VCD_001137 PF04452 RNA methyltransferase VCD_001138 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VCD_001138 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VCD_001139 PF02622 Uncharacterized ACR, COG1678 VCD_001140 PF03652 Holliday junction resolvase VCD_001141 PF01479 S4 domain VCD_001141 PF00579 tRNA synthetases class I (W and Y) VCD_001145 PF00437 Type II/IV secretion system protein VCD_001146 PF01168 Alanine racemase, N-terminal domain VCD_001147 PF03807 NADP oxidoreductase coenzyme F420-dependent VCD_001147 PF14748 Pyrroline-5-carboxylate reductase dimerisation VCD_001148 PF02325 YGGT family VCD_001149 PF02594 Uncharacterised ACR, YggU family COG1872 VCD_001151 PF01725 Ham1 family VCD_001152 PF06969 HemN C-terminal domain VCD_001152 PF04055 Radical SAM superfamily VCD_001153 PF04960 Glutaminase VCD_001154 PF02390 Putative methyltransferase VCD_001155 PF10576 Iron-sulfur binding domain of endonuclease III VCD_001155 PF00633 Helix-hairpin-helix motif VCD_001155 PF00730 HhH-GPD superfamily base excision DNA repair protein VCD_001155 PF14815 NUDIX domain VCD_001156 PF04362 Bacterial Fe(2+) trafficking VCD_001157 PF01464 Transglycosylase SLT domain VCD_001157 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VCD_001158 PF12729 Four helix bundle sensory module for signal transduction VCD_001158 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_001158 PF00672 HAMP domain VCD_001159 PF00226 DnaJ domain VCD_001159 PF05099 Tellurite resistance protein TerB VCD_001160 PF04453 LPS transport system D VCD_001160 PF03968 OstA-like protein VCD_001161 PF09312 SurA N-terminal domain VCD_001162 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VCD_001163 PF00398 Ribosomal RNA adenine dimethylase VCD_001164 PF04379 ApaG domain VCD_001165 PF00149 Calcineurin-like phosphoesterase VCD_001166 PF00186 Dihydrofolate reductase VCD_001167 PF12821 Threonine/Serine exporter, ThrE VCD_001168 PF06738 Putative threonine/serine exporter VCD_001169 PF01926 50S ribosome-binding GTPase VCD_001169 PF01018 GTP1/OBG VCD_001170 PF01016 Ribosomal L27 protein VCD_001171 PF00829 Ribosomal prokaryotic L21 protein VCD_001172 PF00348 Polyprenyl synthetase VCD_001175 PF00056 lactate/malate dehydrogenase, NAD binding domain VCD_001175 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VCD_001176 PF01316 Arginine repressor, DNA binding domain VCD_001176 PF02863 Arginine repressor, C-terminal domain VCD_001177 PF16868 NMT1-like family VCD_001179 PF00582 Universal stress protein family VCD_001185 PF07804 HipA-like C-terminal domain VCD_001185 PF13657 HipA N-terminal domain VCD_001188 PF02384 N-6 DNA Methylase VCD_001190 PF11867 Domain of unknown function (DUF3387) VCD_001190 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_001190 PF18766 SWI2/SNF2 ATPase VCD_001198 PF06877 Regulator of ribonuclease activity B VCD_001200 PF01523 Putative modulator of DNA gyrase VCD_001201 PF00795 Carbon-nitrogen hydrolase VCD_001202 PF13502 AsmA-like C-terminal region VCD_001202 PF13116 Protein of unknown function VCD_001203 PF10150 Ribonuclease E/G family VCD_001203 PF00575 S1 RNA binding domain VCD_001204 PF02545 Maf-like protein VCD_001205 PF04093 rod shape-determining protein MreD VCD_001206 PF04085 rod shape-determining protein MreC VCD_001214 PF07963 Prokaryotic N-terminal methylation motif VCD_001214 PF00114 Pilin (bacterial filament) VCD_001217 PF00482 Type II secretion system (T2SS), protein F VCD_001218 PF00437 Type II/IV secretion system protein VCD_001220 PF13401 AAA domain VCD_001220 PF01471 Putative peptidoglycan binding domain VCD_001221 PF11741 AMIN domain VCD_001221 PF00263 Bacterial type II and III secretion system protein VCD_001221 PF07660 Secretin and TonB N terminus short domain VCD_001221 PF03958 Bacterial type II/III secretion system short domain VCD_001225 PF17157 Gammaproteobacterial periplasmic sensor domain VCD_001225 PF00563 EAL domain VCD_001225 PF00990 Diguanylate cyclase, GGDEF domain VCD_001226 PF00436 Single-strand binding protein family VCD_001227 PF00196 Bacterial regulatory proteins, luxR family VCD_001228 PF00483 Nucleotidyl transferase VCD_001229 PF00005 ABC transporter VCD_001229 PF17760 UvrA interaction domain VCD_001229 PF17755 UvrA DNA-binding domain VCD_001231 PF00266 Aminotransferase class-V VCD_001232 PF00696 Amino acid kinase family VCD_001232 PF01842 ACT domain VCD_001233 PF02310 B12 binding domain VCD_001233 PF00809 Pterin binding enzyme VCD_001233 PF02965 Vitamin B12 dependent methionine synthase, activation domain VCD_001233 PF02574 Homocysteine S-methyltransferase VCD_001233 PF02607 B12 binding domain VCD_001234 PF00999 Sodium/hydrogen exchanger family VCD_001237 PF01507 Phosphoadenosine phosphosulfate reductase family VCD_001238 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VCD_001238 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VCD_001239 PF00667 FAD binding domain VCD_001239 PF00175 Oxidoreductase NAD-binding domain VCD_001239 PF00258 Flavodoxin VCD_001242 PF09583 Phage shock protein G (Phageshock_PspG) VCD_001244 PF01207 Dihydrouridine synthase (Dus) VCD_001246 PF01475 Ferric uptake regulator family VCD_001248 PF12706 Beta-lactamase superfamily domain VCD_001250 PF00342 Phosphoglucose isomerase VCD_001251 PF01894 Uncharacterised protein family UPF0047 VCD_001252 PF01168 Alanine racemase, N-terminal domain VCD_001252 PF00842 Alanine racemase, C-terminal domain VCD_001253 PF00772 DnaB-like helicase N terminal domain VCD_001253 PF03796 DnaB-like helicase C terminal domain VCD_001255 PF03948 Ribosomal protein L9, C-terminal domain VCD_001255 PF01281 Ribosomal protein L9, N-terminal domain VCD_001256 PF01084 Ribosomal protein S18 VCD_001257 PF00436 Single-strand binding protein family VCD_001258 PF01250 Ribosomal protein S6 VCD_001259 PF00210 Ferritin-like domain VCD_001260 PF04324 BFD-like [2Fe-2S] binding domain VCD_001261 PF00009 Elongation factor Tu GTP binding domain VCD_001261 PF03143 Elongation factor Tu C-terminal domain VCD_001261 PF03144 Elongation factor Tu domain 2 VCD_001262 PF03144 Elongation factor Tu domain 2 VCD_001262 PF00009 Elongation factor Tu GTP binding domain VCD_001262 PF03764 Elongation factor G, domain IV VCD_001262 PF00679 Elongation factor G C-terminus VCD_001262 PF14492 Elongation Factor G, domain II VCD_001263 PF00177 Ribosomal protein S7p/S5e VCD_001264 PF00164 Ribosomal protein S12/S23 VCD_001266 PF02635 DsrE/DsrF-like family VCD_001267 PF02635 DsrE/DsrF-like family VCD_001268 PF08348 YheO-like PAS domain VCD_001268 PF13309 HTH domain VCD_001269 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCD_001269 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_001271 PF04102 SlyX VCD_001272 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VCD_001273 PF01145 SPFH domain / Band 7 family VCD_001274 PF01145 SPFH domain / Band 7 family VCD_001274 PF12221 Bacterial membrane protein N terminal VCD_001275 PF16360 GTP-binding GTPase Middle Region VCD_001275 PF01926 50S ribosome-binding GTPase VCD_001275 PF13167 GTP-binding GTPase N-terminal VCD_001276 PF17209 Hfq protein VCD_001278 PF08676 MutL C terminal dimerisation domain VCD_001278 PF01119 DNA mismatch repair protein, C-terminal domain VCD_001279 PF01520 N-acetylmuramoyl-L-alanine amidase VCD_001280 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VCD_001281 PF08331 Domain of unknown function (DUF1730) VCD_001282 PF00929 Exonuclease VCD_001283 PF03193 RsgA GTPase VCD_001284 PF03193 RsgA GTPase VCD_001285 PF02666 Phosphatidylserine decarboxylase VCD_001286 PF02080 TrkA-C domain VCD_001286 PF03600 Citrate transporter VCD_001288 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VCD_001288 PF01676 Metalloenzyme superfamily VCD_001289 PF01551 Peptidase family M23 VCD_001291 PF00440 Bacterial regulatory proteins, tetR family VCD_001291 PF08360 QacR-like protein, C-terminal region VCD_001292 PF01208 Uroporphyrinogen decarboxylase (URO-D) VCD_001293 PF09297 NADH pyrophosphatase zinc ribbon domain VCD_001293 PF00293 NUDIX domain VCD_001294 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VCD_001295 PF04997 RNA polymerase Rpb1, domain 1 VCD_001295 PF00623 RNA polymerase Rpb1, domain 2 VCD_001295 PF04983 RNA polymerase Rpb1, domain 3 VCD_001295 PF05000 RNA polymerase Rpb1, domain 4 VCD_001295 PF04998 RNA polymerase Rpb1, domain 5 VCD_001296 PF04560 RNA polymerase Rpb2, domain 7 VCD_001296 PF00562 RNA polymerase Rpb2, domain 6 VCD_001296 PF04565 RNA polymerase Rpb2, domain 3 VCD_001296 PF04561 RNA polymerase Rpb2, domain 2 VCD_001296 PF04563 RNA polymerase beta subunit VCD_001296 PF10385 RNA polymerase beta subunit external 1 domain VCD_001297 PF16320 Ribosomal protein L7/L12 dimerisation domain VCD_001297 PF00542 Ribosomal protein L7/L12 C-terminal domain VCD_001298 PF00466 Ribosomal protein L10 VCD_001299 PF00687 Ribosomal protein L1p/L10e family VCD_001300 PF03946 Ribosomal protein L11, N-terminal domain VCD_001300 PF00298 Ribosomal protein L11, RNA binding domain VCD_001301 PF02357 Transcription termination factor nusG VCD_001301 PF00467 KOW motif VCD_001302 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VCD_001303 PF03144 Elongation factor Tu domain 2 VCD_001303 PF03143 Elongation factor Tu C-terminal domain VCD_001303 PF00009 Elongation factor Tu GTP binding domain VCD_001304 PF00485 Phosphoribulokinase / Uridine kinase family VCD_001305 PF08279 HTH domain VCD_001305 PF03099 Biotin/lipoate A/B protein ligase family VCD_001305 PF02237 Biotin protein ligase C terminal domain VCD_001306 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VCD_001306 PF01565 FAD binding domain VCD_001308 PF13091 PLD-like domain VCD_001310 PF00175 Oxidoreductase NAD-binding domain VCD_001311 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_001311 PF00970 Oxidoreductase FAD-binding domain VCD_001311 PF00175 Oxidoreductase NAD-binding domain VCD_001312 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VCD_001314 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCD_001314 PF07498 Rho termination factor, N-terminal domain VCD_001314 PF07497 Rho termination factor, RNA-binding domain VCD_001315 PF00085 Thioredoxin VCD_001316 PF00270 DEAD/DEAH box helicase VCD_001316 PF00271 Helicase conserved C-terminal domain VCD_001317 PF02541 Ppx/GppA phosphatase family VCD_001318 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001318 PF09456 RcsC Alpha-Beta-Loop (ABL) VCD_001318 PF00072 Response regulator receiver domain VCD_001318 PF00512 His Kinase A (phospho-acceptor) domain VCD_001319 PF12832 MFS_1 like family VCD_001322 PF00501 AMP-binding enzyme VCD_001322 PF16177 Acetyl-coenzyme A synthetase N-terminus VCD_001322 PF13193 AMP-binding enzyme C-terminal domain VCD_001323 PF01220 Dehydroquinase class II VCD_001324 PF00364 Biotin-requiring enzyme VCD_001325 PF00289 Biotin carboxylase, N-terminal domain VCD_001325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCD_001325 PF02785 Biotin carboxylase C-terminal domain VCD_001329 PF01207 Dihydrouridine synthase (Dus) VCD_001330 PF02954 Bacterial regulatory protein, Fis family VCD_001331 PF00356 Bacterial regulatory proteins, lacI family VCD_001331 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCD_001332 PF00920 Dehydratase family VCD_001333 PF01202 Shikimate kinase VCD_001334 PF02447 GntP family permease VCD_001335 PF01081 KDPG and KHG aldolase VCD_001339 PF17200 Single Cache domain 2 VCD_001339 PF00672 HAMP domain VCD_001339 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_001340 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCD_001340 PF01276 Orn/Lys/Arg decarboxylase, major domain VCD_001340 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCD_001341 PF13520 Amino acid permease VCD_001342 PF18500 CadC C-terminal domain 1 VCD_001342 PF00486 Transcriptional regulatory protein, C terminal VCD_001343 PF13411 MerR HTH family regulatory protein VCD_001345 PF01808 AICARFT/IMPCHase bienzyme VCD_001345 PF02142 MGS-like domain VCD_001346 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VCD_001346 PF02843 Phosphoribosylglycinamide synthetase, C domain VCD_001346 PF02844 Phosphoribosylglycinamide synthetase, N domain VCD_001348 PF00216 Bacterial DNA-binding protein VCD_001350 PF00571 CBS domain VCD_001350 PF01595 Cyclin M transmembrane N-terminal domain VCD_001351 PF00480 ROK family VCD_001352 PF01238 Phosphomannose isomerase type I VCD_001353 PF04222 Protein of unknown function (DUF416) VCD_001354 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_001355 PF03167 Uracil DNA glycosylase superfamily VCD_001356 PF00924 Mechanosensitive ion channel VCD_001357 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VCD_001357 PF00753 Metallo-beta-lactamase superfamily VCD_001357 PF10996 Beta-Casp domain VCD_001359 PF02397 Bacterial sugar transferase VCD_001360 PF01370 NAD dependent epimerase/dehydratase family VCD_001361 PF02719 Polysaccharide biosynthesis protein VCD_001367 PF00171 Aldehyde dehydrogenase family VCD_001367 PF00465 Iron-containing alcohol dehydrogenase VCD_001368 PF00501 AMP-binding enzyme VCD_001368 PF13193 AMP-binding enzyme C-terminal domain VCD_001370 PF00005 ABC transporter VCD_001370 PF14524 Wzt C-terminal domain VCD_001373 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VCD_001374 PF16363 GDP-mannose 4,6 dehydratase VCD_001375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_001375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_001375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_001375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_001376 PF00483 Nucleotidyl transferase VCD_001376 PF01050 Mannose-6-phosphate isomerase VCD_001377 PF01370 NAD dependent epimerase/dehydratase family VCD_001378 PF00457 Glycosyl hydrolases family 11 VCD_001378 PF01522 Polysaccharide deacetylase VCD_001381 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCD_001383 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VCD_001384 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VCD_001391 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCD_001392 PF00535 Glycosyl transferase family 2 VCD_001393 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCD_001394 PF01467 Cytidylyltransferase-like VCD_001395 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VCD_001395 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VCD_001395 PF06827 Zinc finger found in FPG and IleRS VCD_001397 PF00471 Ribosomal protein L33 VCD_001398 PF00830 Ribosomal L28 family VCD_001399 PF04002 RadC-like JAB domain VCD_001400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_001400 PF00672 HAMP domain VCD_001400 PF02743 Cache domain VCD_001401 PF02441 Flavoprotein VCD_001401 PF04127 DNA / pantothenate metabolism flavoprotein VCD_001402 PF00440 Bacterial regulatory proteins, tetR family VCD_001403 PF03279 Bacterial lipid A biosynthesis acyltransferase VCD_001404 PF03279 Bacterial lipid A biosynthesis acyltransferase VCD_001405 PF00156 Phosphoribosyl transferase domain VCD_001406 PF03725 3' exoribonuclease family, domain 2 VCD_001406 PF01138 3' exoribonuclease family, domain 1 VCD_001407 PF08340 Domain of unknown function (DUF1732) VCD_001407 PF03755 YicC-like family, N-terminal region VCD_001408 PF03350 Uncharacterized protein family, UPF0114 VCD_001409 PF00367 phosphotransferase system, EIIB VCD_001409 PF02378 Phosphotransferase system, EIIC VCD_001410 PF13580 SIS domain VCD_001411 PF01380 SIS domain VCD_001411 PF01418 Helix-turn-helix domain, rpiR family VCD_001412 PF01032 FecCD transport family VCD_001413 PF01497 Periplasmic binding protein VCD_001414 PF00005 ABC transporter VCD_001415 PF07715 TonB-dependent Receptor Plug Domain VCD_001415 PF00593 TonB dependent receptor VCD_001416 PF00005 ABC transporter VCD_001416 PF00664 ABC transporter transmembrane region VCD_001419 PF00270 DEAD/DEAH box helicase VCD_001419 PF00271 Helicase conserved C-terminal domain VCD_001419 PF00570 HRDC domain VCD_001419 PF16124 RecQ zinc-binding VCD_001419 PF09382 RQC domain VCD_001420 PF00892 EamA-like transporter family VCD_001422 PF12833 Helix-turn-helix domain VCD_001423 PF01810 LysE type translocator VCD_001424 PF13361 UvrD-like helicase C-terminal domain VCD_001424 PF00580 UvrD/REP helicase N-terminal domain VCD_001425 PF01432 Peptidase family M3 VCD_001426 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VCD_001427 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_001427 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_001435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_001437 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_001437 PF00528 Binding-protein-dependent transport system inner membrane component VCD_001439 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_001440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_001440 PF00005 ABC transporter VCD_001441 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCD_001442 PF00580 UvrD/REP helicase N-terminal domain VCD_001442 PF13361 UvrD-like helicase C-terminal domain VCD_001443 PF00440 Bacterial regulatory proteins, tetR family VCD_001444 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_001445 PF00873 AcrB/AcrD/AcrF family VCD_001446 PF04380 Membrane fusogenic activity VCD_001447 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VCD_001447 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VCD_001448 PF03466 LysR substrate binding domain VCD_001448 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_001451 PF12724 Flavodoxin domain VCD_001452 PF02386 Cation transport protein VCD_001453 PF09186 Domain of unknown function (DUF1949) VCD_001453 PF01205 Uncharacterized protein family UPF0029 VCD_001454 PF00378 Enoyl-CoA hydratase/isomerase VCD_001454 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCD_001454 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCD_001455 PF00108 Thiolase, N-terminal domain VCD_001455 PF02803 Thiolase, C-terminal domain VCD_001456 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_001456 PF03466 LysR substrate binding domain VCD_001457 PF07690 Major Facilitator Superfamily VCD_001458 PF12804 MobA-like NTP transferase domain VCD_001458 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_001459 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VCD_001459 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VCD_001460 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCD_001460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCD_001461 PF00231 ATP synthase VCD_001462 PF00306 ATP synthase alpha/beta chain, C terminal domain VCD_001462 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCD_001462 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCD_001463 PF00213 ATP synthase delta (OSCP) subunit VCD_001464 PF00430 ATP synthase B/B' CF(0) VCD_001465 PF00137 ATP synthase subunit C VCD_001466 PF00119 ATP synthase A chain VCD_001467 PF03899 ATP synthase I chain VCD_001468 PF17762 HTH domain found in ParB protein VCD_001468 PF02195 ParB-like nuclease domain VCD_001469 PF13614 AAA domain VCD_001470 PF02527 rRNA small subunit methyltransferase G VCD_001471 PF01134 Glucose inhibited division protein A VCD_001471 PF13932 GidA associated domain VCD_001472 PF00258 Flavodoxin VCD_001473 PF10396 GTP-binding protein TrmE N-terminus VCD_001473 PF12631 MnmE helical domain VCD_001473 PF01926 50S ribosome-binding GTPase VCD_001474 PF02096 60Kd inner membrane protein VCD_001474 PF14849 YidC periplasmic domain VCD_001475 PF00825 Ribonuclease P VCD_001476 PF00468 Ribosomal protein L34 VCD_001477 PF00005 ABC transporter VCD_001478 PF00528 Binding-protein-dependent transport system inner membrane component VCD_001479 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_001480 PF00308 Bacterial dnaA protein VCD_001480 PF11638 DnaA N-terminal domain VCD_001480 PF08299 Bacterial dnaA protein helix-turn-helix VCD_001481 PF00712 DNA polymerase III beta subunit, N-terminal domain VCD_001481 PF02767 DNA polymerase III beta subunit, central domain VCD_001481 PF02768 DNA polymerase III beta subunit, C-terminal domain VCD_001482 PF02463 RecF/RecN/SMC N terminal domain VCD_001483 PF18053 DNA gyrase B subunit insert domain VCD_001483 PF01751 Toprim domain VCD_001483 PF00204 DNA gyrase B VCD_001483 PF00986 DNA gyrase B subunit, carboxyl terminus VCD_001483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001486 PF00011 Hsp20/alpha crystallin family VCD_001487 PF00155 Aminotransferase class I and II VCD_001488 PF05746 DALR anticodon binding domain VCD_001488 PF02092 Glycyl-tRNA synthetase beta subunit VCD_001489 PF02091 Glycyl-tRNA synthetase alpha subunit VCD_001490 PF01169 Uncharacterized protein family UPF0016 VCD_001492 PF01206 Sulfurtransferase TusA VCD_001494 PF00107 Zinc-binding dehydrogenase VCD_001494 PF08240 Alcohol dehydrogenase GroES-like domain VCD_001495 PF00291 Pyridoxal-phosphate dependent enzyme VCD_001495 PF00585 C-terminal regulatory domain of Threonine dehydratase VCD_001496 PF00920 Dehydratase family VCD_001497 PF01063 Amino-transferase class IV VCD_001499 PF00205 Thiamine pyrophosphate enzyme, central domain VCD_001499 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCD_001499 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_001500 PF01078 Magnesium chelatase, subunit ChlI VCD_001500 PF13335 Magnesium chelatase, subunit ChlI C-terminal VCD_001501 PF01553 Acyltransferase VCD_001502 PF01323 DSBA-like thioredoxin domain VCD_001503 PF01636 Phosphotransferase enzyme family VCD_001504 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VCD_001504 PF13746 4Fe-4S dicluster domain VCD_001504 PF12801 4Fe-4S binding domain VCD_001505 PF06288 Protein of unknown function (DUF1040) VCD_001508 PF07070 SpoOM protein VCD_001509 PF03006 Haemolysin-III related VCD_001511 PF02386 Cation transport protein VCD_001512 PF02254 TrkA-N domain VCD_001512 PF02080 TrkA-C domain VCD_001513 PF01029 NusB family VCD_001513 PF01189 16S rRNA methyltransferase RsmB/F VCD_001514 PF02911 Formyl transferase, C-terminal domain VCD_001514 PF00551 Formyl transferase VCD_001515 PF01327 Polypeptide deformylase VCD_001516 PF01476 LysM domain VCD_001517 PF02481 DNA recombination-mediator protein A VCD_001517 PF17782 DprA winged helix domain VCD_001518 PF04361 Protein of unknown function (DUF494) VCD_001519 PF01396 Topoisomerase DNA binding C4 zinc finger VCD_001520 PF02222 ATP-grasp domain VCD_001520 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VCD_001521 PF00731 AIR carboxylase VCD_001522 PF01300 Telomere recombination VCD_001523 PF01218 Coproporphyrinogen III oxidase VCD_001524 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VCD_001524 PF01488 Shikimate / quinate 5-dehydrogenase VCD_001524 PF08501 Shikimate dehydrogenase substrate binding domain VCD_001526 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_001528 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VCD_001529 PF01964 Radical SAM ThiC family VCD_001529 PF13667 ThiC-associated domain VCD_001530 PF02581 Thiamine monophosphate synthase VCD_001531 PF00899 ThiF family VCD_001532 PF02597 ThiS family VCD_001533 PF05690 Thiazole biosynthesis protein ThiG VCD_001534 PF04055 Radical SAM superfamily VCD_001534 PF06968 Biotin and Thiamin Synthesis associated domain VCD_001535 PF01321 Creatinase/Prolidase N-terminal domain VCD_001535 PF01321 Creatinase/Prolidase N-terminal domain VCD_001535 PF00557 Metallopeptidase family M24 VCD_001535 PF00557 Metallopeptidase family M24 VCD_001536 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_001536 PF03466 LysR substrate binding domain VCD_001537 PF07690 Major Facilitator Superfamily VCD_001539 PF01037 Lrp/AsnC ligand binding domain VCD_001540 PF08448 PAS fold VCD_001540 PF00563 EAL domain VCD_001540 PF00990 Diguanylate cyclase, GGDEF domain VCD_001541 PF04445 Putative SAM-dependent methyltransferase VCD_001543 PF00892 EamA-like transporter family VCD_001544 PF00582 Universal stress protein family VCD_001545 PF00210 Ferritin-like domain VCD_001546 PF10625 Universal stress protein B (UspB) VCD_001549 PF02646 RmuC family VCD_001550 PF01209 ubiE/COQ5 methyltransferase family VCD_001551 PF02036 SCP-2 sterol transfer family VCD_001552 PF03109 ABC1 family VCD_001553 PF02416 mttA/Hcf106 family VCD_001554 PF02416 mttA/Hcf106 family VCD_001555 PF00902 Sec-independent protein translocase protein (TatC) VCD_001556 PF03150 Di-haem cytochrome c peroxidase VCD_001556 PF00034 Cytochrome c VCD_001557 PF01554 MatE VCD_001559 PF00717 Peptidase S24-like VCD_001559 PF01726 LexA DNA binding domain VCD_001560 PF01553 Acyltransferase VCD_001561 PF01040 UbiA prenyltransferase family VCD_001562 PF04345 Chorismate lyase VCD_001563 PF03748 Flagellar basal body-associated protein FliL VCD_001564 PF00672 HAMP domain VCD_001564 PF02203 Tar ligand binding domain homologue VCD_001564 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_001565 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VCD_001565 PF01694 Rhomboid family VCD_001566 PF00581 Rhodanese-like domain VCD_001567 PF01026 TatD related DNase VCD_001568 PF00490 Delta-aminolevulinic acid dehydratase VCD_001570 PF01612 3'-5' exonuclease VCD_001570 PF01367 5'-3' exonuclease, C-terminal SAM fold VCD_001570 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCD_001570 PF00476 DNA polymerase family A VCD_001571 PF01926 50S ribosome-binding GTPase VCD_001572 PF00034 Cytochrome c VCD_001574 PF04220 Der GTPase activator (YihI) VCD_001575 PF10675 Protein of unknown function (DUF2489) VCD_001576 PF06969 HemN C-terminal domain VCD_001576 PF04055 Radical SAM superfamily VCD_001577 PF07219 HemY protein N-terminus VCD_001578 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VCD_001579 PF02602 Uroporphyrinogen-III synthase HemD VCD_001580 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VCD_001580 PF03900 Porphobilinogen deaminase, C-terminal domain VCD_001582 PF12633 Adenylate cyclase NT domain VCD_001582 PF01295 Adenylate cyclase, class-I VCD_001583 PF01491 Frataxin-like domain VCD_001585 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VCD_001585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VCD_001586 PF01678 Diaminopimelate epimerase VCD_001587 PF04340 Protein of unknown function, DUF484 VCD_001588 PF02899 Phage integrase, N-terminal SAM-like domain VCD_001588 PF00589 Phage integrase family VCD_001589 PF13419 Haloacid dehalogenase-like hydrolase VCD_001590 PF00990 Diguanylate cyclase, GGDEF domain VCD_001590 PF10442 FIST C domain VCD_001590 PF00563 EAL domain VCD_001590 PF08495 FIST N domain VCD_001594 PF12146 Serine aminopeptidase, S33 VCD_001595 PF01810 LysE type translocator VCD_001596 PF00563 EAL domain VCD_001596 PF08668 HDOD domain VCD_001597 PF00210 Ferritin-like domain VCD_001604 PF00448 SRP54-type protein, GTPase domain VCD_001604 PF02881 SRP54-type protein, helical bundle domain VCD_001605 PF00005 ABC transporter VCD_001606 PF18075 FtsX extracellular domain VCD_001607 PF04545 Sigma-70, region 4 VCD_001607 PF04542 Sigma-70 region 2 VCD_001607 PF00140 Sigma-70 factor, region 1.2 VCD_001608 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_001608 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_001609 PF00440 Bacterial regulatory proteins, tetR family VCD_001611 PF05958 tRNA (Uracil-5-)-methyltransferase VCD_001612 PF07715 TonB-dependent Receptor Plug Domain VCD_001612 PF00593 TonB dependent receptor VCD_001613 PF04151 Bacterial pre-peptidase C-terminal domain VCD_001613 PF00082 Subtilase family VCD_001613 PF05922 Peptidase inhibitor I9 VCD_001614 PF01177 Asp/Glu/Hydantoin racemase VCD_001617 PF00962 Adenosine/AMP deaminase VCD_001618 PF03707 Bacterial signalling protein N terminal repeat VCD_001618 PF00990 Diguanylate cyclase, GGDEF domain VCD_001618 PF00563 EAL domain VCD_001618 PF13188 PAS domain VCD_001619 PF02954 Bacterial regulatory protein, Fis family VCD_001619 PF00072 Response regulator receiver domain VCD_001619 PF00158 Sigma-54 interaction domain VCD_001620 PF00512 His Kinase A (phospho-acceptor) domain VCD_001620 PF00989 PAS fold VCD_001620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001622 PF00120 Glutamine synthetase, catalytic domain VCD_001622 PF03951 Glutamine synthetase, beta-Grasp domain VCD_001625 PF03668 P-loop ATPase protein family VCD_001626 PF03631 Virulence factor BrkB VCD_001627 PF02580 D-Tyr-tRNA(Tyr) deacylase VCD_001628 PF00583 Acetyltransferase (GNAT) family VCD_001628 PF09500 Putative thioesterase (yiiD_Cterm) VCD_001630 PF01293 Phosphoenolpyruvate carboxykinase VCD_001631 PF01430 Hsp33 protein VCD_001632 PF01479 S4 domain VCD_001633 PF11356 Type II secretion system protein C VCD_001634 PF03958 Bacterial type II/III secretion system short domain VCD_001634 PF00263 Bacterial type II and III secretion system protein VCD_001635 PF00437 Type II/IV secretion system protein VCD_001636 PF00482 Type II secretion system (T2SS), protein F VCD_001637 PF08334 Type II secretion system (T2SS), protein G VCD_001637 PF07963 Prokaryotic N-terminal methylation motif VCD_001638 PF12019 Type II transport protein GspH VCD_001639 PF07963 Prokaryotic N-terminal methylation motif VCD_001639 PF02501 Type II secretion system (T2SS), protein I VCD_001640 PF07963 Prokaryotic N-terminal methylation motif VCD_001640 PF11612 Type II secretion system (T2SS), protein J VCD_001641 PF03934 Type II secretion system (T2SS), protein K VCD_001642 PF05134 Type II secretion system (T2SS), protein L VCD_001642 PF12693 GspL periplasmic domain VCD_001643 PF04612 Type II secretion system (T2SS), protein M VCD_001644 PF01203 Type II secretion system (T2SS), protein N VCD_001645 PF00459 Inositol monophosphatase family VCD_001646 PF00293 NUDIX domain VCD_001647 PF01521 Iron-sulphur cluster biosynthesis VCD_001647 PF01106 NifU-like domain VCD_001648 PF00156 Phosphoribosyl transferase domain VCD_001649 PF00561 alpha/beta hydrolase fold VCD_001651 PF16921 Tex protein YqgF-like domain VCD_001651 PF09371 Tex-like protein N-terminal domain VCD_001651 PF00575 S1 RNA binding domain VCD_001651 PF17674 HHH domain VCD_001652 PF03449 Transcription elongation factor, N-terminal VCD_001652 PF01272 Transcription elongation factor, GreA/GreB, C-term VCD_001653 PF00072 Response regulator receiver domain VCD_001653 PF00486 Transcriptional regulatory protein, C terminal VCD_001654 PF00672 HAMP domain VCD_001654 PF00512 His Kinase A (phospho-acceptor) domain VCD_001654 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001655 PF00860 Permease family VCD_001656 PF00271 Helicase conserved C-terminal domain VCD_001656 PF17191 RecG wedge domain VCD_001656 PF00270 DEAD/DEAH box helicase VCD_001657 PF02824 TGS domain VCD_001657 PF13291 ACT domain VCD_001657 PF04607 Region found in RelA / SpoT proteins VCD_001658 PF01192 RNA polymerase Rpb6 VCD_001659 PF00625 Guanylate kinase VCD_001660 PF02592 Putative vitamin uptake transporter VCD_001661 PF00474 Sodium:solute symporter family VCD_001663 PF03471 Transporter associated domain VCD_001663 PF00999 Sodium/hydrogen exchanger family VCD_001663 PF02080 TrkA-C domain VCD_001664 PF00196 Bacterial regulatory proteins, luxR family VCD_001664 PF00072 Response regulator receiver domain VCD_001665 PF11412 Disulphide bond corrector protein DsbC VCD_001665 PF02683 Cytochrome C biogenesis protein transmembrane region VCD_001667 PF17967 Pullulanase N2 domain VCD_001667 PF18494 Pullulanase Ins domain VCD_001667 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCD_001667 PF03714 Bacterial pullanase-associated domain VCD_001667 PF11852 Domain of unknown function (DUF3372) VCD_001669 PF03605 Anaerobic c4-dicarboxylate membrane transporter VCD_001670 PF00206 Lyase VCD_001670 PF10415 Fumarase C C-terminus VCD_001671 PF00990 Diguanylate cyclase, GGDEF domain VCD_001671 PF17158 Membrane-associated sensor, integral membrane domain VCD_001672 PF04186 FxsA cytoplasmic membrane protein VCD_001673 PF00588 SpoU rRNA Methylase family VCD_001674 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCD_001674 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCD_001675 PF00672 HAMP domain VCD_001675 PF16527 Two-component sensor protein CpxA, periplasmic domain VCD_001675 PF00512 His Kinase A (phospho-acceptor) domain VCD_001675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001676 PF00486 Transcriptional regulatory protein, C terminal VCD_001676 PF00072 Response regulator receiver domain VCD_001678 PF01545 Cation efflux family VCD_001678 PF16916 Dimerisation domain of Zinc Transporter VCD_001679 PF00365 Phosphofructokinase VCD_001680 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VCD_001681 PF06005 Cell division protein ZapB VCD_001682 PF02219 Methylenetetrahydrofolate reductase VCD_001684 PF00696 Amino acid kinase family VCD_001684 PF00742 Homoserine dehydrogenase VCD_001684 PF03447 Homoserine dehydrogenase, NAD binding domain VCD_001685 PF01053 Cys/Met metabolism PLP-dependent enzyme VCD_001686 PF01340 Met Apo-repressor, MetJ VCD_001687 PF03949 Malic enzyme, NAD binding domain VCD_001687 PF00390 Malic enzyme, N-terminal domain VCD_001688 PF01197 Ribosomal protein L31 VCD_001689 PF00271 Helicase conserved C-terminal domain VCD_001689 PF00270 DEAD/DEAH box helicase VCD_001689 PF17764 3′ DNA-binding domain (3′BD) VCD_001689 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VCD_001689 PF18074 Primosomal protein N C-terminal domain VCD_001690 PF00356 Bacterial regulatory proteins, lacI family VCD_001691 PF05036 Sporulation related domain VCD_001692 PF00227 Proteasome subunit VCD_001693 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_001693 PF07724 AAA domain (Cdc48 subfamily) VCD_001693 PF00004 ATPase family associated with various cellular activities (AAA) VCD_001694 PF01040 UbiA prenyltransferase family VCD_001695 PF03737 Aldolase/RraA VCD_001697 PF00121 Triosephosphate isomerase VCD_001701 PF08220 DeoR-like helix-turn-helix domain VCD_001701 PF00455 DeoR C terminal sensor domain VCD_001702 PF00166 Chaperonin 10 Kd subunit VCD_001703 PF00118 TCP-1/cpn60 chaperonin family VCD_001705 PF04055 Radical SAM superfamily VCD_001706 PF08207 Elongation factor P (EF-P) KOW-like domain VCD_001706 PF09285 Elongation factor P, C-terminal VCD_001706 PF01132 Elongation factor P (EF-P) OB domain VCD_001707 PF02313 Fumarate reductase subunit D VCD_001708 PF02300 Fumarate reductase subunit C VCD_001709 PF13085 2Fe-2S iron-sulfur cluster binding domain VCD_001709 PF13183 4Fe-4S dicluster domain VCD_001710 PF02910 Fumarate reductase flavoprotein C-term VCD_001710 PF00890 FAD binding domain VCD_001711 PF00152 tRNA synthetases class II (D, K and N) VCD_001712 PF00581 Rhodanese-like domain VCD_001713 PF02556 Preprotein translocase subunit SecB VCD_001714 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VCD_001714 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VCD_001715 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_001715 PF06426 Serine acetyltransferase, N-terminal VCD_001717 PF00311 Phosphoenolpyruvate carboxylase VCD_001718 PF01546 Peptidase family M20/M25/M40 VCD_001718 PF07687 Peptidase dimerisation domain VCD_001719 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCD_001719 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCD_001720 PF00696 Amino acid kinase family VCD_001721 PF00764 Arginosuccinate synthase VCD_001723 PF14698 Argininosuccinate lyase C-terminal VCD_001723 PF00206 Lyase VCD_001725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_001725 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_001726 PF00462 Glutaredoxin VCD_001726 PF08534 Redoxin VCD_001727 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_001727 PF03466 LysR substrate binding domain VCD_001728 PF17092 Penicillin-binding protein OB-like domain VCD_001728 PF00905 Penicillin binding protein transpeptidase domain VCD_001728 PF00912 Transglycosylase VCD_001733 PF00263 Bacterial type II and III secretion system protein VCD_001733 PF11741 AMIN domain VCD_001733 PF03958 Bacterial type II/III secretion system short domain VCD_001733 PF07660 Secretin and TonB N terminus short domain VCD_001734 PF01202 Shikimate kinase VCD_001735 PF01761 3-dehydroquinate synthase VCD_001737 PF02086 D12 class N6 adenine-specific DNA methyltransferase VCD_001738 PF00834 Ribulose-phosphate 3 epimerase family VCD_001739 PF13419 Haloacid dehalogenase-like hydrolase VCD_001740 PF00579 tRNA synthetases class I (W and Y) VCD_001743 PF18693 TRAM domain VCD_001743 PF04055 Radical SAM superfamily VCD_001743 PF00919 Uncharacterized protein family UPF0004 VCD_001744 PF00117 Glutamine amidotransferase class-I VCD_001745 PF00202 Aminotransferase class-III VCD_001746 PF04958 Arginine N-succinyltransferase beta subunit VCD_001747 PF00171 Aldehyde dehydrogenase family VCD_001749 PF13545 Crp-like helix-turn-helix domain VCD_001749 PF00027 Cyclic nucleotide-binding domain VCD_001750 PF00485 Phosphoribulokinase / Uridine kinase family VCD_001751 PF06794 Uncharacterised protein family (UPF0270) VCD_001753 PF00561 alpha/beta hydrolase fold VCD_001755 PF00005 ABC transporter VCD_001755 PF12848 ABC transporter VCD_001756 PF02525 Flavodoxin-like fold VCD_001757 PF02254 TrkA-N domain VCD_001757 PF00999 Sodium/hydrogen exchanger family VCD_001759 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_001760 PF01112 Asparaginase VCD_001761 PF00709 Adenylosuccinate synthetase VCD_001762 PF08238 Sel1 repeat VCD_001763 PF11893 Domain of unknown function (DUF3413) VCD_001763 PF00884 Sulfatase VCD_001764 PF17876 Cold shock domain VCD_001764 PF00575 S1 RNA binding domain VCD_001764 PF00773 RNB domain VCD_001764 PF08461 Ribonuclease R winged-helix domain VCD_001764 PF08206 Ribonuclease B OB domain VCD_001765 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCD_001765 PF00588 SpoU rRNA Methylase family VCD_001766 PF00338 Ribosomal protein S10p/S20e VCD_001767 PF00297 Ribosomal protein L3 VCD_001768 PF00573 Ribosomal protein L4/L1 family VCD_001769 PF00276 Ribosomal protein L23 VCD_001770 PF00181 Ribosomal Proteins L2, RNA binding domain VCD_001770 PF03947 Ribosomal Proteins L2, C-terminal domain VCD_001771 PF00203 Ribosomal protein S19 VCD_001772 PF00237 Ribosomal protein L22p/L17e VCD_001773 PF00189 Ribosomal protein S3, C-terminal domain VCD_001773 PF07650 KH domain VCD_001774 PF00252 Ribosomal protein L16p/L10e VCD_001775 PF00831 Ribosomal L29 protein VCD_001776 PF00366 Ribosomal protein S17 VCD_001777 PF00238 Ribosomal protein L14p/L23e VCD_001778 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VCD_001778 PF00467 KOW motif VCD_001779 PF00673 ribosomal L5P family C-terminus VCD_001779 PF00281 Ribosomal protein L5 VCD_001780 PF00253 Ribosomal protein S14p/S29e VCD_001781 PF00410 Ribosomal protein S8 VCD_001782 PF00347 Ribosomal protein L6 VCD_001783 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VCD_001784 PF03719 Ribosomal protein S5, C-terminal domain VCD_001784 PF00333 Ribosomal protein S5, N-terminal domain VCD_001785 PF00327 Ribosomal protein L30p/L7e VCD_001786 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VCD_001787 PF00344 SecY translocase VCD_001788 PF00444 Ribosomal protein L36 VCD_001789 PF00416 Ribosomal protein S13/S18 VCD_001790 PF00411 Ribosomal protein S11 VCD_001791 PF01479 S4 domain VCD_001791 PF00163 Ribosomal protein S4/S9 N-terminal domain VCD_001792 PF01000 RNA polymerase Rpb3/RpoA insert domain VCD_001792 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VCD_001792 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VCD_001793 PF01196 Ribosomal protein L17 VCD_001795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCD_001795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_001796 PF04225 Opacity-associated protein A LysM-like domain VCD_001796 PF08525 Opacity-associated protein A N-terminal motif VCD_001797 PF00892 EamA-like transporter family VCD_001798 PF13673 Acetyltransferase (GNAT) domain VCD_001799 PF03880 DbpA RNA binding domain VCD_001799 PF00270 DEAD/DEAH box helicase VCD_001799 PF00271 Helicase conserved C-terminal domain VCD_001801 PF02872 5'-nucleotidase, C-terminal domain VCD_001801 PF00149 Calcineurin-like phosphoesterase VCD_001802 PF10414 Sirohaem synthase dimerisation region VCD_001802 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCD_001802 PF14824 Sirohaem biosynthesis protein central VCD_001803 PF01507 Phosphoadenosine phosphosulfate reductase family VCD_001804 PF00009 Elongation factor Tu GTP binding domain VCD_001809 PF00005 ABC transporter VCD_001811 PF10795 Protein of unknown function (DUF2607) VCD_001812 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VCD_001813 PF01625 Peptide methionine sulfoxide reductase VCD_001814 PF01103 Surface antigen VCD_001814 PF17243 POTRA domain TamA domain 1 VCD_001814 PF07244 Surface antigen variable number repeat VCD_001815 PF04357 TamB, inner membrane protein subunit of TAM complex VCD_001816 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VCD_001817 PF00719 Inorganic pyrophosphatase VCD_001818 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VCD_001819 PF01225 Mur ligase family, catalytic domain VCD_001819 PF02875 Mur ligase family, glutamate ligase domain VCD_001819 PF08245 Mur ligase middle domain VCD_001820 PF02441 Flavoprotein VCD_001822 PF00528 Binding-protein-dependent transport system inner membrane component VCD_001823 PF00005 ABC transporter VCD_001824 PF04751 Protein of unknown function (DUF615) VCD_001825 PF01523 Putative modulator of DNA gyrase VCD_001826 PF03448 MgtE intracellular N domain VCD_001826 PF01769 Divalent cation transporter VCD_001826 PF00571 CBS domain VCD_001827 PF00381 PTS HPr component phosphorylation site VCD_001828 PF03668 P-loop ATPase protein family VCD_001829 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCD_001830 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCD_001831 PF04552 Sigma-54, DNA binding domain VCD_001831 PF00309 Sigma-54 factor, Activator interacting domain (AID) VCD_001831 PF04963 Sigma-54 factor, core binding domain VCD_001832 PF00005 ABC transporter VCD_001832 PF12399 Branched-chain amino acid ATP-binding cassette transporter VCD_001833 PF03968 OstA-like protein VCD_001836 PF01380 SIS domain VCD_001836 PF00571 CBS domain VCD_001837 PF01699 Sodium/calcium exchanger protein VCD_001838 PF00005 ABC transporter VCD_001839 PF02405 Permease MlaE VCD_001840 PF02470 MlaD protein VCD_001841 PF05494 MlaC protein VCD_001843 PF01722 BolA-like protein VCD_001844 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCD_001845 PF01553 Acyltransferase VCD_001846 PF01042 Endoribonuclease L-PSP VCD_001847 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VCD_001847 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VCD_001848 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCD_001848 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCD_001849 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCD_001849 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCD_001850 PF02562 PhoH-like protein VCD_001850 PF13638 PIN domain VCD_001851 PF18337 RapA N-terminal Tudor like domain VCD_001851 PF18339 RapA N-terminal Tudor like domain 1 VCD_001851 PF00176 SNF2 family N-terminal domain VCD_001851 PF12137 RNA polymerase recycling family C-terminal VCD_001851 PF00271 Helicase conserved C-terminal domain VCD_001852 PF00849 RNA pseudouridylate synthase VCD_001853 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_001853 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCD_001854 PF10458 Valyl tRNA synthetase tRNA binding arm VCD_001854 PF08264 Anticodon-binding domain of tRNA VCD_001854 PF00133 tRNA synthetases class I (I, L, M and V) VCD_001855 PF04364 DNA polymerase III chi subunit, HolC VCD_001856 PF00883 Cytosol aminopeptidase family, catalytic domain VCD_001856 PF02789 Cytosol aminopeptidase family, N-terminal domain VCD_001857 PF03739 Lipopolysaccharide export system permease LptF/LptG VCD_001858 PF03739 Lipopolysaccharide export system permease LptF/LptG VCD_001860 PF00072 Response regulator receiver domain VCD_001863 PF00694 Aconitase C-terminal domain VCD_001864 PF00330 Aconitase family (aconitate hydratase) VCD_001865 PF00180 Isocitrate/isopropylmalate dehydrogenase VCD_001866 PF08502 LeuA allosteric (dimerisation) domain VCD_001866 PF00682 HMGL-like VCD_001868 PF01569 PAP2 superfamily VCD_001871 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_001871 PF03466 LysR substrate binding domain VCD_001872 PF00501 AMP-binding enzyme VCD_001873 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCD_001873 PF00205 Thiamine pyrophosphate enzyme, central domain VCD_001873 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_001874 PF10369 Small subunit of acetolactate synthase VCD_001875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_001875 PF01842 ACT domain VCD_001875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCD_001876 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VCD_001877 PF01812 5-formyltetrahydrofolate cyclo-ligase family VCD_001878 PF05164 Cell division protein ZapA VCD_001879 PF03695 Uncharacterised protein family (UPF0149) VCD_001880 PF01494 FAD binding domain VCD_001881 PF01494 FAD binding domain VCD_001884 PF03937 Flavinator of succinate dehydrogenase VCD_001886 PF02910 Fumarate reductase flavoprotein C-term VCD_001886 PF00890 FAD binding domain VCD_001887 PF04542 Sigma-70 region 2 VCD_001887 PF08281 Sigma-70, region 4 VCD_001888 PF03872 Anti sigma-E protein RseA, N-terminal domain VCD_001888 PF03873 Anti sigma-E protein RseA, C-terminal domain VCD_001889 PF17188 MucB/RseB C-terminal domain VCD_001889 PF03888 MucB/RseB N-terminal domain VCD_001891 PF03144 Elongation factor Tu domain 2 VCD_001891 PF00009 Elongation factor Tu GTP binding domain VCD_001891 PF00679 Elongation factor G C-terminus VCD_001891 PF06421 GTP-binding protein LepA C-terminus VCD_001892 PF10502 Signal peptidase, peptidase S26 VCD_001893 PF00035 Double-stranded RNA binding motif VCD_001893 PF14622 Ribonuclease-III-like VCD_001894 PF07650 KH domain VCD_001894 PF01926 50S ribosome-binding GTPase VCD_001895 PF02565 Recombination protein O C terminal VCD_001895 PF11967 Recombination protein O N terminal VCD_001896 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VCD_001897 PF01648 4'-phosphopantetheinyl transferase superfamily VCD_001900 PF00990 Diguanylate cyclase, GGDEF domain VCD_001900 PF00563 EAL domain VCD_001901 PF01627 Hpt domain VCD_001901 PF00512 His Kinase A (phospho-acceptor) domain VCD_001901 PF00672 HAMP domain VCD_001901 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCD_001901 PF00072 Response regulator receiver domain VCD_001901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001902 PF05958 tRNA (Uracil-5-)-methyltransferase VCD_001902 PF01938 TRAM domain VCD_001903 PF13291 ACT domain VCD_001903 PF02824 TGS domain VCD_001903 PF04607 Region found in RelA / SpoT proteins VCD_001904 PF03819 MazG nucleotide pyrophosphohydrolase domain VCD_001906 PF06418 CTP synthase N-terminus VCD_001906 PF00117 Glutamine amidotransferase class-I VCD_001907 PF03952 Enolase, N-terminal domain VCD_001907 PF00113 Enolase, C-terminal TIM barrel domain VCD_001908 PF12627 Probable RNA and SrmB- binding site of polymerase A VCD_001908 PF01743 Poly A polymerase head domain VCD_001908 PF01966 HD domain VCD_001909 PF13401 AAA domain VCD_001909 PF01471 Putative peptidoglycan binding domain VCD_001911 PF08239 Bacterial SH3 domain VCD_001912 PF01384 Phosphate transporter family VCD_001914 PF01865 Protein of unknown function DUF47 VCD_001915 PF01928 CYTH domain VCD_001916 PF02743 Cache domain VCD_001916 PF00672 HAMP domain VCD_001916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_001917 PF08335 GlnD PII-uridylyltransferase VCD_001917 PF03710 Glutamate-ammonia ligase adenylyltransferase VCD_001918 PF01467 Cytidylyltransferase-like VCD_001918 PF00294 pfkB family carbohydrate kinase VCD_001919 PF02321 Outer membrane efflux protein VCD_001920 PF00293 NUDIX domain VCD_001921 PF06853 Protein of unknown function (DUF1249) VCD_001922 PF00149 Calcineurin-like phosphoesterase VCD_001923 PF05728 Uncharacterised protein family (UPF0227) VCD_001924 PF00986 DNA gyrase B subunit, carboxyl terminus VCD_001924 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001924 PF00204 DNA gyrase B VCD_001924 PF01751 Toprim domain VCD_001925 PF00521 DNA gyrase/topoisomerase IV, subunit A VCD_001925 PF03989 DNA gyrase C-terminal domain, beta-propeller VCD_001926 PF03884 DNA gyrase inhibitor YacG VCD_001927 PF07072 Cell division protein VCD_001928 PF01121 Dephospho-CoA kinase VCD_001929 PF01478 Type IV leader peptidase family VCD_001929 PF06750 Bacterial Peptidase A24 N-terminal domain VCD_001930 PF00482 Type II secretion system (T2SS), protein F VCD_001931 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VCD_001931 PF00437 Type II/IV secretion system protein VCD_001932 PF00114 Pilin (bacterial filament) VCD_001932 PF07963 Prokaryotic N-terminal methylation motif VCD_001933 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VCD_001933 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VCD_001934 PF01510 N-acetylmuramoyl-L-alanine amidase VCD_001935 PF00258 Flavodoxin VCD_001936 PF02899 Phage integrase, N-terminal SAM-like domain VCD_001936 PF00589 Phage integrase family VCD_001937 PF13098 Thioredoxin-like domain VCD_001937 PF10411 Disulfide bond isomerase protein N-terminus VCD_001938 PF02272 DHHA1 domain VCD_001938 PF01368 DHH family VCD_001938 PF17768 RecJ OB domain VCD_001939 PF02872 5'-nucleotidase, C-terminal domain VCD_001939 PF00149 Calcineurin-like phosphoesterase VCD_001940 PF00392 Bacterial regulatory proteins, gntR family VCD_001940 PF07729 FCD domain VCD_001941 PF00456 Transketolase, thiamine diphosphate binding domain VCD_001941 PF17831 Pyruvate dehydrogenase E1 component middle domain VCD_001942 PF00364 Biotin-requiring enzyme VCD_001942 PF02817 e3 binding domain VCD_001942 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCD_001943 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_001943 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_001944 PF01795 MraW methylase family VCD_001945 PF04999 Cell division protein FtsL VCD_001946 PF03717 Penicillin-binding Protein dimerisation domain VCD_001946 PF00905 Penicillin binding protein transpeptidase domain VCD_001947 PF08245 Mur ligase middle domain VCD_001947 PF01225 Mur ligase family, catalytic domain VCD_001947 PF02875 Mur ligase family, glutamate ligase domain VCD_001948 PF02875 Mur ligase family, glutamate ligase domain VCD_001948 PF08245 Mur ligase middle domain VCD_001948 PF01225 Mur ligase family, catalytic domain VCD_001949 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VCD_001949 PF00953 Glycosyl transferase family 4 VCD_001950 PF08245 Mur ligase middle domain VCD_001950 PF02875 Mur ligase family, glutamate ligase domain VCD_001951 PF01098 Cell cycle protein VCD_001952 PF04101 Glycosyltransferase family 28 C-terminal domain VCD_001952 PF03033 Glycosyltransferase family 28 N-terminal domain VCD_001953 PF01225 Mur ligase family, catalytic domain VCD_001953 PF02875 Mur ligase family, glutamate ligase domain VCD_001953 PF08245 Mur ligase middle domain VCD_001954 PF08478 POTRA domain, FtsQ-type VCD_001954 PF03799 Cell division protein FtsQ VCD_001955 PF02491 SHS2 domain inserted in FTSA VCD_001956 PF12327 FtsZ family, C-terminal domain VCD_001956 PF00091 Tubulin/FtsZ family, GTPase domain VCD_001957 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VCD_001959 PF01043 SecA preprotein cross-linking domain VCD_001959 PF07517 SecA DEAD-like domain VCD_001959 PF07516 SecA Wing and Scaffold domain VCD_001959 PF02810 SEC-C motif VCD_001960 PF00293 NUDIX domain VCD_001961 PF05173 Dihydrodipicolinate reductase, C-terminus VCD_001961 PF01113 Dihydrodipicolinate reductase, N-terminus VCD_001962 PF00117 Glutamine amidotransferase class-I VCD_001962 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VCD_001963 PF02142 MGS-like domain VCD_001963 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCD_001963 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCD_001965 PF00005 ABC transporter VCD_001966 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VCD_001967 PF01925 Sulfite exporter TauE/SafE VCD_001968 PF03466 LysR substrate binding domain VCD_001968 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_001969 PF03458 UPF0126 domain VCD_001970 PF01497 Periplasmic binding protein VCD_001972 PF01048 Phosphorylase superfamily VCD_001974 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_001974 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCD_001975 PF00310 Glutamine amidotransferases class-II VCD_001975 PF04898 Glutamate synthase central domain VCD_001975 PF01645 Conserved region in glutamate synthase VCD_001975 PF01493 GXGXG motif VCD_001976 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_001976 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCD_001977 PF04898 Glutamate synthase central domain VCD_001977 PF00310 Glutamine amidotransferases class-II VCD_001977 PF01493 GXGXG motif VCD_001977 PF01645 Conserved region in glutamate synthase VCD_001978 PF04055 Radical SAM superfamily VCD_001978 PF16199 Radical_SAM C-terminal domain VCD_001979 PF00563 EAL domain VCD_001979 PF01590 GAF domain VCD_001979 PF00360 Phytochrome region VCD_001979 PF00990 Diguanylate cyclase, GGDEF domain VCD_001980 PF00072 Response regulator receiver domain VCD_001980 PF00989 PAS fold VCD_001980 PF01627 Hpt domain VCD_001980 PF00512 His Kinase A (phospho-acceptor) domain VCD_001980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_001980 PF18415 Histidine kinase receptor ArcB trans-membrane domain VCD_001981 PF00486 Transcriptional regulatory protein, C terminal VCD_001981 PF00072 Response regulator receiver domain VCD_001983 PF03737 Aldolase/RraA VCD_001985 PF01842 ACT domain VCD_001985 PF03447 Homoserine dehydrogenase, NAD binding domain VCD_001985 PF13840 ACT domain VCD_001985 PF00696 Amino acid kinase family VCD_001985 PF00742 Homoserine dehydrogenase VCD_001986 PF08544 GHMP kinases C terminal VCD_001986 PF00288 GHMP kinases N terminal domain VCD_001987 PF00291 Pyridoxal-phosphate dependent enzyme VCD_001987 PF14821 Threonine synthase N terminus VCD_001988 PF01228 Glycine radical VCD_001989 PF01261 Xylose isomerase-like TIM barrel VCD_001990 PF03167 Uracil DNA glycosylase superfamily VCD_001993 PF01235 Sodium:alanine symporter family VCD_001994 PF03883 Peroxide stress protein YaaA VCD_001996 PF01026 TatD related DNase VCD_001997 PF07670 Nucleoside recognition VCD_001997 PF07662 Na+ dependent nucleoside transporter C-terminus VCD_001997 PF01773 Na+ dependent nucleoside transporter N-terminus VCD_001998 PF01791 DeoC/LacD family aldolase VCD_001999 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VCD_001999 PF00591 Glycosyl transferase family, a/b domain VCD_001999 PF02885 Glycosyl transferase family, helical bundle domain VCD_002000 PF01676 Metalloenzyme superfamily VCD_002001 PF01048 Phosphorylase superfamily VCD_002003 PF18429 Domain of unknown function (DUF5609) VCD_002005 PF18073 Rubredoxin metal binding domain VCD_002006 PF00679 Elongation factor G C-terminus VCD_002006 PF03144 Elongation factor Tu domain 2 VCD_002006 PF03764 Elongation factor G, domain IV VCD_002006 PF00009 Elongation factor Tu GTP binding domain VCD_002006 PF14492 Elongation Factor G, domain II VCD_002007 PF00501 AMP-binding enzyme VCD_002008 PF00072 Response regulator receiver domain VCD_002010 PF02929 Beta galactosidase small chain VCD_002010 PF16353 Domain of unknown function(DUF4981) VCD_002010 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VCD_002010 PF00703 Glycosyl hydrolases family 2 VCD_002010 PF02837 Glycosyl hydrolases family 2, sugar binding domain VCD_002011 PF00356 Bacterial regulatory proteins, lacI family VCD_002012 PF01588 Putative tRNA binding domain VCD_002014 PF01544 CorA-like Mg2+ transporter protein VCD_002016 PF08443 RimK-like ATP-grasp domain VCD_002016 PF18030 RimK PreATP-grasp domain VCD_002016 PF02080 TrkA-C domain VCD_002017 PF00583 Acetyltransferase (GNAT) family VCD_002019 PF14602 Hexapeptide repeat of succinyl-transferase VCD_002019 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VCD_002020 PF07130 YebG protein VCD_002023 PF17946 RecC C-terminal domain VCD_002024 PF13361 UvrD-like helicase C-terminal domain VCD_002024 PF00580 UvrD/REP helicase N-terminal domain VCD_002024 PF12705 PD-(D/E)XK nuclease superfamily VCD_002025 PF13538 UvrD-like helicase C-terminal domain VCD_002027 PF00583 Acetyltransferase (GNAT) family VCD_002027 PF00696 Amino acid kinase family VCD_002031 PF06725 3D domain VCD_002031 PF03562 MltA specific insert domain VCD_002032 PF00899 ThiF family VCD_002033 PF02657 Fe-S metabolism associated domain VCD_002034 PF00266 Aminotransferase class-V VCD_002035 PF01965 DJ-1/PfpI family VCD_002036 PF02558 Ketopantoate reductase PanE/ApbA VCD_002036 PF08546 Ketopantoate reductase PanE/ApbA C terminal VCD_002037 PF03502 Nucleoside-specific channel-forming protein, Tsx VCD_002039 PF04542 Sigma-70 region 2 VCD_002039 PF04545 Sigma-70, region 4 VCD_002041 PF07690 Major Facilitator Superfamily VCD_002042 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCD_002044 PF05175 Methyltransferase small domain VCD_002045 PF01722 BolA-like protein VCD_002046 PF11973 NQRA C-terminal domain VCD_002046 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VCD_002047 PF03116 NQR2, RnfD, RnfE family VCD_002048 PF04205 FMN-binding domain VCD_002049 PF02508 Rnf-Nqr subunit, membrane protein VCD_002050 PF02508 Rnf-Nqr subunit, membrane protein VCD_002051 PF00970 Oxidoreductase FAD-binding domain VCD_002051 PF00175 Oxidoreductase NAD-binding domain VCD_002051 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_002052 PF02424 ApbE family VCD_002054 PF11798 IMS family HHH motif VCD_002054 PF00817 impB/mucB/samB family VCD_002058 PF00209 Sodium:neurotransmitter symporter family VCD_002060 PF18030 RimK PreATP-grasp domain VCD_002060 PF08443 RimK-like ATP-grasp domain VCD_002061 PF18030 RimK PreATP-grasp domain VCD_002061 PF08443 RimK-like ATP-grasp domain VCD_002062 PF07687 Peptidase dimerisation domain VCD_002062 PF01546 Peptidase family M20/M25/M40 VCD_002064 PF00860 Permease family VCD_002065 PF00156 Phosphoribosyl transferase domain VCD_002067 PF07417 Sigma factor-binding transcriptional regulator Crl VCD_002068 PF01472 PUA domain VCD_002068 PF00696 Amino acid kinase family VCD_002069 PF00171 Aldehyde dehydrogenase family VCD_002070 PF03477 ATP cone domain VCD_002071 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_002071 PF01872 RibD C-terminal domain VCD_002072 PF00677 Lumazine binding domain VCD_002073 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VCD_002073 PF00925 GTP cyclohydrolase II VCD_002074 PF00885 6,7-dimethyl-8-ribityllumazine synthase VCD_002075 PF01029 NusB family VCD_002076 PF00586 AIR synthase related protein, N-terminal domain VCD_002076 PF02769 AIR synthase related protein, C-terminal domain VCD_002077 PF04608 Phosphatidylglycerophosphatase A VCD_002078 PF11944 Protein of unknown function (DUF3461) VCD_002079 PF01966 HD domain VCD_002079 PF01909 Nucleotidyltransferase domain VCD_002079 PF08335 GlnD PII-uridylyltransferase VCD_002080 PF00557 Metallopeptidase family M24 VCD_002081 PF00318 Ribosomal protein S2 VCD_002082 PF00889 Elongation factor TS VCD_002083 PF00696 Amino acid kinase family VCD_002084 PF01765 Ribosome recycling factor VCD_002085 PF01255 Putative undecaprenyl diphosphate synthase VCD_002087 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VCD_002087 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VCD_002087 PF13288 DXP reductoisomerase C-terminal domain VCD_002088 PF17820 PDZ domain VCD_002088 PF02163 Peptidase family M50 VCD_002089 PF07244 Surface antigen variable number repeat VCD_002089 PF01103 Surface antigen VCD_002090 PF03938 Outer membrane protein (OmpH-like) VCD_002091 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VCD_002091 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_002092 PF07977 FabA-like domain VCD_002093 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_002093 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VCD_002094 PF02684 Lipid-A-disaccharide synthetase VCD_002095 PF01351 Ribonuclease HII VCD_002096 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VCD_002096 PF02811 PHP domain VCD_002096 PF01336 OB-fold nucleic acid binding domain VCD_002096 PF14579 Helix-hairpin-helix motif VCD_002096 PF07733 Bacterial DNA polymerase III alpha NTPase domain VCD_002097 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VCD_002098 PF09179 TilS substrate binding domain VCD_002098 PF01171 PP-loop family VCD_002098 PF11734 TilS substrate C-terminal domain VCD_002099 PF00034 Cytochrome c VCD_002100 PF05870 Phenolic acid decarboxylase (PAD) VCD_002101 PF00543 Nitrogen regulatory protein P-II VCD_002102 PF03372 Endonuclease/Exonuclease/phosphatase family VCD_002103 PF01476 LysM domain VCD_002103 PF01464 Transglycosylase SLT domain VCD_002104 PF16123 Hydroxyacylglutathione hydrolase C-terminus VCD_002104 PF00753 Metallo-beta-lactamase superfamily VCD_002105 PF08241 Methyltransferase domain VCD_002106 PF00075 RNase H VCD_002107 PF00929 Exonuclease VCD_002109 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCD_002109 PF02770 Acyl-CoA dehydrogenase, middle domain VCD_002109 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCD_002109 PF09317 Domain of unknown function (DUF1974) VCD_002110 PF13580 SIS domain VCD_002111 PF13230 Glutamine amidotransferases class-II VCD_002112 PF00551 Formyl transferase VCD_002113 PF02769 AIR synthase related protein, C-terminal domain VCD_002113 PF00586 AIR synthase related protein, N-terminal domain VCD_002115 PF08448 PAS fold VCD_002115 PF00990 Diguanylate cyclase, GGDEF domain VCD_002116 PF00849 RNA pseudouridylate synthase VCD_002116 PF01479 S4 domain VCD_002117 PF01713 Smr domain VCD_002119 PF01963 TraB family VCD_002121 PF03173 Putative carbohydrate binding domain VCD_002121 PF00728 Glycosyl hydrolase family 20, catalytic domain VCD_002121 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VCD_002121 PF02838 Glycosyl hydrolase family 20, domain 2 VCD_002123 PF00403 Heavy-metal-associated domain VCD_002124 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCD_002125 PF00691 OmpA family VCD_002125 PF01389 OmpA-like transmembrane domain VCD_002127 PF07715 TonB-dependent Receptor Plug Domain VCD_002128 PF04954 Siderophore-interacting protein VCD_002128 PF08021 Siderophore-interacting FAD-binding domain VCD_002129 PF00550 Phosphopantetheine attachment site VCD_002129 PF00668 Condensation domain VCD_002129 PF08242 Methyltransferase domain VCD_002129 PF00501 AMP-binding enzyme VCD_002136 PF01584 CheW-like domain VCD_002136 PF00072 Response regulator receiver domain VCD_002137 PF01739 CheR methyltransferase, SAM binding domain VCD_002137 PF03705 CheR methyltransferase, all-alpha domain VCD_002138 PF00460 Flagella basal body rod protein VCD_002139 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_002139 PF00460 Flagella basal body rod protein VCD_002140 PF03963 Flagellar hook capping protein - N-terminal region VCD_002140 PF13860 FlgD Ig-like domain VCD_002140 PF13861 FlgD Tudor-like domain VCD_002141 PF07559 Flagellar basal body protein FlaE VCD_002141 PF00460 Flagella basal body rod protein VCD_002141 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_002142 PF00460 Flagella basal body rod protein VCD_002142 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_002143 PF00460 Flagella basal body rod protein VCD_002143 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_002144 PF02107 Flagellar L-ring protein VCD_002145 PF02119 Flagellar P-ring protein VCD_002146 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VCD_002146 PF10135 Rod binding protein VCD_002147 PF07196 Flagellin hook IN motif VCD_002147 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_002149 PF00700 Bacterial flagellin C-terminal helical region VCD_002149 PF07196 Flagellin hook IN motif VCD_002149 PF00669 Bacterial flagellin N-terminal helical region VCD_002150 PF00589 Phage integrase family VCD_002150 PF02899 Phage integrase, N-terminal SAM-like domain VCD_002162 PF05840 Bacteriophage replication gene A protein (GPA) VCD_002191 PF00669 Bacterial flagellin N-terminal helical region VCD_002191 PF07196 Flagellin hook IN motif VCD_002191 PF00700 Bacterial flagellin C-terminal helical region VCD_002193 PF01926 50S ribosome-binding GTPase VCD_002193 PF06071 Protein of unknown function (DUF933) VCD_002194 PF01195 Peptidyl-tRNA hydrolase VCD_002195 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VCD_002195 PF14572 Phosphoribosyl synthetase-associated domain VCD_002196 PF00288 GHMP kinases N terminal domain VCD_002196 PF08544 GHMP kinases C terminal VCD_002197 PF03550 Outer membrane lipoprotein LolB VCD_002198 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VCD_002198 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VCD_002198 PF01488 Shikimate / quinate 5-dehydrogenase VCD_002199 PF03462 PCRF domain VCD_002199 PF00472 RF-1 domain VCD_002200 PF17827 PrmC N-terminal domain VCD_002200 PF13847 Methyltransferase domain VCD_002201 PF04247 Invasion gene expression up-regulator, SirB VCD_002202 PF13369 Transglutaminase-like superfamily VCD_002203 PF00793 DAHP synthetase I family VCD_002204 PF02872 5'-nucleotidase, C-terminal domain VCD_002204 PF00149 Calcineurin-like phosphoesterase VCD_002205 PF04073 Aminoacyl-tRNA editing domain VCD_002206 PF00860 Permease family VCD_002209 PF03358 NADPH-dependent FMN reductase VCD_002210 PF03960 ArsC family VCD_002211 PF01435 Peptidase family M48 VCD_002211 PF13181 Tetratricopeptide repeat VCD_002213 PF01594 AI-2E family transporter VCD_002214 PF00672 HAMP domain VCD_002214 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002214 PF02743 Cache domain VCD_002215 PF00578 AhpC/TSA family VCD_002217 PF00701 Dihydrodipicolinate synthetase family VCD_002218 PF06804 NlpB/DapX lipoprotein VCD_002220 PF02557 D-alanyl-D-alanine carboxypeptidase VCD_002221 PF07687 Peptidase dimerisation domain VCD_002221 PF01546 Peptidase family M20/M25/M40 VCD_002222 PF03960 ArsC family VCD_002225 PF11143 Protein of unknown function (DUF2919) VCD_002226 PF04261 Dyp-type peroxidase family VCD_002227 PF00700 Bacterial flagellin C-terminal helical region VCD_002227 PF00669 Bacterial flagellin N-terminal helical region VCD_002227 PF07196 Flagellin hook IN motif VCD_002228 PF00700 Bacterial flagellin C-terminal helical region VCD_002228 PF07196 Flagellin hook IN motif VCD_002228 PF00669 Bacterial flagellin N-terminal helical region VCD_002229 PF07196 Flagellin hook IN motif VCD_002229 PF00700 Bacterial flagellin C-terminal helical region VCD_002229 PF00669 Bacterial flagellin N-terminal helical region VCD_002230 PF03646 FlaG protein VCD_002231 PF07196 Flagellin hook IN motif VCD_002231 PF07195 Flagellar hook-associated protein 2 C-terminus VCD_002231 PF02465 Flagellar hook-associated protein 2 N-terminus VCD_002233 PF02561 Flagellar protein FliS VCD_002234 PF02954 Bacterial regulatory protein, Fis family VCD_002234 PF00158 Sigma-54 interaction domain VCD_002234 PF00072 Response regulator receiver domain VCD_002235 PF13426 PAS domain VCD_002235 PF13493 Domain of unknown function (DUF4118) VCD_002235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002235 PF00512 His Kinase A (phospho-acceptor) domain VCD_002235 PF00989 PAS fold VCD_002235 PF08447 PAS fold VCD_002236 PF00158 Sigma-54 interaction domain VCD_002236 PF02954 Bacterial regulatory protein, Fis family VCD_002236 PF00072 Response regulator receiver domain VCD_002237 PF02049 Flagellar hook-basal body complex protein FliE VCD_002238 PF08345 Flagellar M-ring protein C-terminal VCD_002238 PF01514 Secretory protein of YscJ/FliF family VCD_002239 PF14841 FliG middle domain VCD_002239 PF01706 FliG C-terminal domain VCD_002239 PF14842 FliG N-terminal domain VCD_002240 PF02108 Flagellar assembly protein FliH VCD_002241 PF18269 T3SS EscN ATPase C-terminal domain VCD_002241 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCD_002244 PF03748 Flagellar basal body-associated protein FliL VCD_002245 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCD_002245 PF02154 Flagellar motor switch protein FliM VCD_002246 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCD_002247 PF04347 Flagellar biosynthesis protein, FliO VCD_002248 PF00813 FliP family VCD_002249 PF01313 Bacterial export proteins, family 3 VCD_002250 PF01311 Bacterial export proteins, family 1 VCD_002251 PF01312 FlhB HrpN YscU SpaS Family VCD_002252 PF01713 Smr domain VCD_002253 PF05175 Methyltransferase small domain VCD_002254 PF01264 Chorismate synthase VCD_002255 PF03458 UPF0126 domain VCD_002256 PF04315 Elongation factor P hydroxylase VCD_002257 PF08891 YfcL protein VCD_002258 PF03358 NADPH-dependent FMN reductase VCD_002259 PF01266 FAD dependent oxidoreductase VCD_002259 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VCD_002260 PF00109 Beta-ketoacyl synthase, N-terminal domain VCD_002260 PF02801 Beta-ketoacyl synthase, C-terminal domain VCD_002261 PF11890 Domain of unknown function (DUF3410) VCD_002261 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_002261 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCD_002262 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCD_002262 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCD_002263 PF01475 Ferric uptake regulator family VCD_002265 PF03466 LysR substrate binding domain VCD_002265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002266 PF03788 LrgA family VCD_002267 PF04172 LrgB-like family VCD_002268 PF00258 Flavodoxin VCD_002270 PF12697 Alpha/beta hydrolase family VCD_002271 PF03925 SeqA protein C-terminal domain VCD_002271 PF17206 SeqA protein N-terminal domain VCD_002272 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_002272 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_002272 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_002272 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_002274 PF01784 NIF3 (NGG1p interacting factor 3) VCD_002275 PF00285 Citrate synthase, C-terminal domain VCD_002276 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCD_002277 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCD_002278 PF00890 FAD binding domain VCD_002278 PF02910 Fumarate reductase flavoprotein C-term VCD_002279 PF13085 2Fe-2S iron-sulfur cluster binding domain VCD_002280 PF16078 2-oxoglutarate dehydrogenase N-terminus VCD_002280 PF00676 Dehydrogenase E1 component VCD_002280 PF16870 2-oxoglutarate dehydrogenase C-terminal VCD_002280 PF02779 Transketolase, pyrimidine binding domain VCD_002281 PF02817 e3 binding domain VCD_002281 PF00364 Biotin-requiring enzyme VCD_002281 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCD_002282 PF00549 CoA-ligase VCD_002282 PF08442 ATP-grasp domain VCD_002283 PF02629 CoA binding domain VCD_002283 PF00549 CoA-ligase VCD_002284 PF00950 ABC 3 transport family VCD_002285 PF00005 ABC transporter VCD_002286 PF01297 Zinc-uptake complex component A periplasmic VCD_002287 PF02311 AraC-like ligand binding domain VCD_002287 PF12833 Helix-turn-helix domain VCD_002289 PF04023 FeoA domain VCD_002290 PF02421 Ferrous iron transport protein B VCD_002290 PF07670 Nucleoside recognition VCD_002290 PF07664 Ferrous iron transport protein B C terminus VCD_002293 PF03485 Arginyl tRNA synthetase N terminal domain VCD_002293 PF05746 DALR anticodon binding domain VCD_002293 PF00750 tRNA synthetases class I (R) VCD_002295 PF05193 Peptidase M16 inactive domain VCD_002295 PF00675 Insulinase (Peptidase family M16) VCD_002296 PF00300 Histidine phosphatase superfamily (branch 1) VCD_002297 PF00771 FHIPEP family VCD_002298 PF00448 SRP54-type protein, GTPase domain VCD_002299 PF10609 NUBPL iron-transfer P-loop NTPase VCD_002300 PF04545 Sigma-70, region 4 VCD_002300 PF04539 Sigma-70 region 3 VCD_002300 PF04542 Sigma-70 region 2 VCD_002301 PF00072 Response regulator receiver domain VCD_002302 PF04344 Chemotaxis phosphatase, CheZ VCD_002303 PF01627 Hpt domain VCD_002303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002303 PF02895 Signal transducing histidine kinase, homodimeric domain VCD_002303 PF01584 CheW-like domain VCD_002303 PF07194 P2 response regulator binding domain VCD_002304 PF01339 CheB methylesterase VCD_002304 PF00072 Response regulator receiver domain VCD_002305 PF13614 AAA domain VCD_002307 PF01584 CheW-like domain VCD_002309 PF00005 ABC transporter VCD_002310 PF03379 CcmB protein VCD_002311 PF01578 Cytochrome C assembly protein VCD_002312 PF04995 Heme exporter protein D (CcmD) VCD_002313 PF03100 CcmE VCD_002314 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VCD_002314 PF01578 Cytochrome C assembly protein VCD_002315 PF08534 Redoxin VCD_002316 PF03918 Cytochrome C biogenesis protein VCD_002318 PF04333 MlaA lipoprotein VCD_002322 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCD_002322 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCD_002323 PF00462 Glutaredoxin VCD_002324 PF01751 Toprim domain VCD_002324 PF01131 DNA topoisomerase VCD_002325 PF00850 Histone deacetylase domain VCD_002326 PF00884 Sulfatase VCD_002326 PF11893 Domain of unknown function (DUF3413) VCD_002327 PF07208 Protein of unknown function (DUF1414) VCD_002328 PF04245 37-kD nucleoid-associated bacterial protein VCD_002330 PF03553 Na+/H+ antiporter family VCD_002331 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCD_002331 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCD_002332 PF01914 MarC family integral membrane protein VCD_002334 PF00171 Aldehyde dehydrogenase family VCD_002334 PF00465 Iron-containing alcohol dehydrogenase VCD_002336 PF01740 STAS domain VCD_002336 PF00916 Sulfate permease family VCD_002337 PF00575 S1 RNA binding domain VCD_002337 PF12111 Polyribonucleotide phosphorylase C terminal VCD_002337 PF10150 Ribonuclease E/G family VCD_002339 PF00849 RNA pseudouridylate synthase VCD_002339 PF01479 S4 domain VCD_002340 PF02545 Maf-like protein VCD_002341 PF02620 Large ribosomal RNA subunit accumulation protein YceD VCD_002342 PF01783 Ribosomal L32p protein family VCD_002343 PF02504 Fatty acid synthesis protein VCD_002344 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VCD_002344 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VCD_002345 PF00698 Acyl transferase domain VCD_002347 PF00550 Phosphopantetheine attachment site VCD_002348 PF00109 Beta-ketoacyl synthase, N-terminal domain VCD_002348 PF02801 Beta-ketoacyl synthase, C-terminal domain VCD_002349 PF01063 Amino-transferase class IV VCD_002350 PF02618 YceG-like family VCD_002351 PF02223 Thymidylate kinase VCD_002352 PF09115 DNA polymerase III, delta subunit, C terminal VCD_002353 PF01026 TatD related DNase VCD_002354 PF00367 phosphotransferase system, EIIB VCD_002354 PF02378 Phosphotransferase system, EIIC VCD_002355 PF00209 Sodium:neurotransmitter symporter family VCD_002358 PF01734 Patatin-like phospholipase VCD_002359 PF02887 Pyruvate kinase, alpha/beta domain VCD_002359 PF00224 Pyruvate kinase, barrel domain VCD_002360 PF00480 ROK family VCD_002361 PF01584 CheW-like domain VCD_002361 PF00072 Response regulator receiver domain VCD_002364 PF13847 Methyltransferase domain VCD_002366 PF01263 Aldose 1-epimerase VCD_002367 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_002367 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCD_002369 PF01641 SelR domain VCD_002372 PF07023 Protein of unknown function (DUF1315) VCD_002373 PF17763 Glutaminase/Asparaginase C-terminal domain VCD_002373 PF00710 Asparaginase, N-terminal VCD_002374 PF01343 Peptidase family S49 VCD_002375 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_002375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCD_002376 PF01842 ACT domain VCD_002376 PF00551 Formyl transferase VCD_002378 PF13307 Helicase C-terminal domain VCD_002378 PF04851 Type III restriction enzyme, res subunit VCD_002379 PF00814 Glycoprotease family VCD_002382 PF00561 alpha/beta hydrolase fold VCD_002383 PF13193 AMP-binding enzyme C-terminal domain VCD_002383 PF00501 AMP-binding enzyme VCD_002384 PF01612 3'-5' exonuclease VCD_002384 PF00570 HRDC domain VCD_002388 PF01966 HD domain VCD_002388 PF13286 Phosphohydrolase-associated domain VCD_002390 PF00155 Aminotransferase class I and II VCD_002391 PF00425 chorismate binding enzyme VCD_002392 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_002392 PF16582 Middle domain of thiamine pyrophosphate VCD_002392 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCD_002393 PF12697 Alpha/beta hydrolase family VCD_002394 PF00378 Enoyl-CoA hydratase/isomerase VCD_002395 PF13378 Enolase C-terminal domain-like VCD_002396 PF00501 AMP-binding enzyme VCD_002396 PF13193 AMP-binding enzyme C-terminal domain VCD_002397 PF03594 Benzoate membrane transport protein VCD_002398 PF07883 Cupin domain VCD_002398 PF01381 Helix-turn-helix VCD_002399 PF00672 HAMP domain VCD_002399 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002399 PF12729 Four helix bundle sensory module for signal transduction VCD_002400 PF07690 Major Facilitator Superfamily VCD_002404 PF04170 NlpE N-terminal domain VCD_002405 PF03776 Septum formation topological specificity factor MinE VCD_002406 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VCD_002407 PF03775 Septum formation inhibitor MinC, C-terminal domain VCD_002407 PF05209 Septum formation inhibitor MinC, N-terminal domain VCD_002408 PF05166 YcgL domain VCD_002409 PF13406 Transglycosylase SLT domain VCD_002410 PF03466 LysR substrate binding domain VCD_002410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002411 PF01773 Na+ dependent nucleoside transporter N-terminus VCD_002411 PF07670 Nucleoside recognition VCD_002411 PF07662 Na+ dependent nucleoside transporter C-terminus VCD_002412 PF00704 Glycosyl hydrolases family 18 VCD_002413 PF03264 NapC/NirT cytochrome c family, N-terminal region VCD_002414 PF01568 Molydopterin dinucleotide binding domain VCD_002414 PF00384 Molybdopterin oxidoreductase VCD_002414 PF18364 Molybdopterin oxidoreductase N-terminal domain VCD_002416 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002416 PF03466 LysR substrate binding domain VCD_002417 PF01494 FAD binding domain VCD_002418 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VCD_002420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VCD_002420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VCD_002429 PF00990 Diguanylate cyclase, GGDEF domain VCD_002429 PF03707 Bacterial signalling protein N terminal repeat VCD_002429 PF13188 PAS domain VCD_002429 PF00563 EAL domain VCD_002432 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VCD_002434 PF03480 Bacterial extracellular solute-binding protein, family 7 VCD_002435 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCD_002436 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCD_002437 PF00158 Sigma-54 interaction domain VCD_002437 PF02954 Bacterial regulatory protein, Fis family VCD_002437 PF00072 Response regulator receiver domain VCD_002438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002438 PF00512 His Kinase A (phospho-acceptor) domain VCD_002438 PF02743 Cache domain VCD_002439 PF05697 Bacterial trigger factor protein (TF) VCD_002439 PF05698 Bacterial trigger factor protein (TF) C-terminus VCD_002439 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_002440 PF00574 Clp protease VCD_002441 PF06689 ClpX C4-type zinc finger VCD_002441 PF07724 AAA domain (Cdc48 subfamily) VCD_002441 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_002442 PF05362 Lon protease (S16) C-terminal proteolytic domain VCD_002442 PF02190 ATP-dependent protease La (LON) substrate-binding domain VCD_002442 PF00004 ATPase family associated with various cellular activities (AAA) VCD_002443 PF00216 Bacterial DNA-binding protein VCD_002444 PF13145 PPIC-type PPIASE domain VCD_002446 PF02224 Cytidylate kinase VCD_002447 PF00575 S1 RNA binding domain VCD_002448 PF00216 Bacterial DNA-binding protein VCD_002449 PF06305 Lipopolysaccharide assembly protein A domain VCD_002450 PF18073 Rubredoxin metal binding domain VCD_002451 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VCD_002452 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VCD_002455 PF03466 LysR substrate binding domain VCD_002455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002457 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VCD_002457 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VCD_002458 PF01037 Lrp/AsnC ligand binding domain VCD_002459 PF17854 FtsK alpha domain VCD_002459 PF09397 Ftsk gamma domain VCD_002459 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VCD_002459 PF01580 FtsK/SpoIIIE family VCD_002460 PF02600 Disulfide bond formation protein DsbB VCD_002461 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VCD_002462 PF00392 Bacterial regulatory proteins, gntR family VCD_002462 PF07840 FadR C-terminal domain VCD_002464 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002464 PF00672 HAMP domain VCD_002465 PF01230 HIT domain VCD_002468 PF13036 Peptidoglycan-synthase activator LpoB VCD_002468 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VCD_002470 PF05728 Uncharacterised protein family (UPF0227) VCD_002471 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_002473 PF07968 Leukocidin/Hemolysin toxin family VCD_002473 PF12563 Hemolytic toxin N terminal VCD_002473 PF16458 Beta-prism lectin VCD_002475 PF02559 CarD-like/TRCF domain VCD_002475 PF00270 DEAD/DEAH box helicase VCD_002475 PF00271 Helicase conserved C-terminal domain VCD_002475 PF03461 TRCF domain VCD_002475 PF17757 UvrB interaction domain VCD_002477 PF02687 FtsX-like permease family VCD_002477 PF12704 MacB-like periplasmic core domain VCD_002478 PF00005 ABC transporter VCD_002479 PF12704 MacB-like periplasmic core domain VCD_002479 PF02687 FtsX-like permease family VCD_002482 PF03772 Competence protein VCD_002482 PF00753 Metallo-beta-lactamase superfamily VCD_002482 PF13567 Domain of unknown function (DUF4131) VCD_002483 PF00005 ABC transporter VCD_002483 PF00664 ABC transporter transmembrane region VCD_002485 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VCD_002486 PF03966 Trm112p-like protein VCD_002487 PF02348 Cytidylyltransferase VCD_002488 PF04293 SpoVR like protein VCD_002489 PF04285 Protein of unknown function (DUF444) VCD_002490 PF08298 PrkA AAA domain VCD_002490 PF06798 PrkA serine protein kinase C-terminal domain VCD_002491 PF03887 YfbU domain VCD_002493 PF04055 Radical SAM superfamily VCD_002494 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002494 PF12729 Four helix bundle sensory module for signal transduction VCD_002494 PF00672 HAMP domain VCD_002496 PF01228 Glycine radical VCD_002496 PF02901 Pyruvate formate lyase-like VCD_002498 PF00005 ABC transporter VCD_002499 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_002500 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002501 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002502 PF03372 Endonuclease/Exonuclease/phosphatase family VCD_002509 PF18766 SWI2/SNF2 ATPase VCD_002509 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_002509 PF11867 Domain of unknown function (DUF3387) VCD_002511 PF02384 N-6 DNA Methylase VCD_002514 PF13657 HipA N-terminal domain VCD_002514 PF07804 HipA-like C-terminal domain VCD_002517 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002517 PF00672 HAMP domain VCD_002518 PF10689 Protein of unknown function (DUF2496) VCD_002519 PF07445 Primosomal replication protein priC VCD_002520 PF01925 Sulfite exporter TauE/SafE VCD_002521 PF13307 Helicase C-terminal domain VCD_002521 PF06733 DEAD_2 VCD_002522 PF13609 Gram-negative porin VCD_002523 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VCD_002524 PF02810 SEC-C motif VCD_002525 PF08668 HDOD domain VCD_002525 PF00563 EAL domain VCD_002526 PF00149 Calcineurin-like phosphoesterase VCD_002527 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCD_002528 PF01406 tRNA synthetases class I (C) catalytic domain VCD_002528 PF09190 DALR domain VCD_002529 PF02075 Crossover junction endodeoxyribonuclease RuvC VCD_002530 PF01330 RuvA N terminal domain VCD_002530 PF07499 RuvA, C-terminal domain VCD_002531 PF05496 Holliday junction DNA helicase RuvB P-loop domain VCD_002531 PF17864 RuvB AAA lid domain VCD_002531 PF05491 RuvB C-terminal winged helix domain VCD_002532 PF01654 Cytochrome bd terminal oxidase subunit I VCD_002533 PF02322 Cytochrome bd terminal oxidase subunit II VCD_002534 PF08173 Membrane bound YbgT-like protein VCD_002535 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) VCD_002537 PF01618 MotA/TolQ/ExbB proton channel family VCD_002538 PF02472 Biopolymer transport protein ExbD/TolR VCD_002540 PF07676 WD40-like Beta Propeller Repeat VCD_002540 PF04052 TolB amino-terminal domain VCD_002541 PF00691 OmpA family VCD_002543 PF02445 Quinolinate synthetase A protein VCD_002545 PF09308 LuxQ, periplasmic VCD_002545 PF00512 His Kinase A (phospho-acceptor) domain VCD_002545 PF00072 Response regulator receiver domain VCD_002545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002546 PF06610 L-alanine exporter VCD_002547 PF01238 Phosphomannose isomerase type I VCD_002548 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCD_002548 PF02378 Phosphotransferase system, EIIC VCD_002548 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCD_002549 PF12833 Helix-turn-helix domain VCD_002551 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCD_002555 PF00171 Aldehyde dehydrogenase family VCD_002557 PF00158 Sigma-54 interaction domain VCD_002557 PF01590 GAF domain VCD_002557 PF02954 Bacterial regulatory protein, Fis family VCD_002558 PF09905 DNA-binding protein VF530 VCD_002560 PF00875 DNA photolyase VCD_002560 PF03441 FAD binding domain of DNA photolyase VCD_002573 PF00005 ABC transporter VCD_002581 PF01527 Transposase VCD_002582 PF00665 Integrase core domain VCD_002585 PF04002 RadC-like JAB domain VCD_002587 PF09264 Vibrio cholerae sialidase, lectin insertion VCD_002587 PF13088 BNR repeat-like domain VCD_002588 PF01979 Amidohydrolase family VCD_002589 PF00480 ROK family VCD_002590 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VCD_002591 PF03480 Bacterial extracellular solute-binding protein, family 7 VCD_002592 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCD_002593 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCD_002594 PF00701 Dihydrodipicolinate synthetase family VCD_002595 PF01418 Helix-turn-helix domain, rpiR family VCD_002595 PF01380 SIS domain VCD_002596 PF01344 Kelch motif VCD_002597 PF07646 Kelch motif VCD_002601 PF02384 N-6 DNA Methylase VCD_002605 PF11867 Domain of unknown function (DUF3387) VCD_002605 PF18766 SWI2/SNF2 ATPase VCD_002605 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_002616 PF11867 Domain of unknown function (DUF3387) VCD_002616 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_002616 PF18766 SWI2/SNF2 ATPase VCD_002618 PF02384 N-6 DNA Methylase VCD_002621 PF13657 HipA N-terminal domain VCD_002621 PF07804 HipA-like C-terminal domain VCD_002624 PF12419 SNF2 Helicase protein VCD_002624 PF00176 SNF2 family N-terminal domain VCD_002624 PF00271 Helicase conserved C-terminal domain VCD_002625 PF13356 Arm DNA-binding domain VCD_002625 PF00589 Phage integrase family VCD_002626 PF00589 Phage integrase family VCD_002626 PF13356 Arm DNA-binding domain VCD_002627 PF00873 AcrB/AcrD/AcrF family VCD_002628 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_002630 PF02470 MlaD protein VCD_002631 PF04403 Paraquat-inducible protein A VCD_002632 PF05552 Conserved TM helix VCD_002632 PF00924 Mechanosensitive ion channel VCD_002636 PF08362 YcdC-like protein, C-terminal region VCD_002636 PF00440 Bacterial regulatory proteins, tetR family VCD_002637 PF00171 Aldehyde dehydrogenase family VCD_002638 PF07383 Protein of unknown function (DUF1496) VCD_002640 PF16295 Tetracyclin repressor-like, C-terminal domain VCD_002640 PF00440 Bacterial regulatory proteins, tetR family VCD_002641 PF02770 Acyl-CoA dehydrogenase, middle domain VCD_002641 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCD_002641 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCD_002641 PF09317 Domain of unknown function (DUF1974) VCD_002642 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VCD_002642 PF12241 Trans-2-enoyl-CoA reductase catalytic region VCD_002642 PF07055 Enoyl reductase FAD binding domain VCD_002643 PF01176 Translation initiation factor 1A / IF-1 VCD_002644 PF04377 Arginine-tRNA-protein transferase, C terminus VCD_002644 PF04376 Arginine-tRNA-protein transferase, N terminus VCD_002645 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VCD_002647 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCD_002648 PF10692 Protein of unknown function (DUF2498) VCD_002649 PF01396 Topoisomerase DNA binding C4 zinc finger VCD_002649 PF01131 DNA topoisomerase VCD_002649 PF08272 Topoisomerase I zinc-ribbon-like VCD_002649 PF01751 Toprim domain VCD_002651 PF00483 Nucleotidyl transferase VCD_002652 PF00534 Glycosyl transferases group 1 VCD_002652 PF08323 Starch synthase catalytic domain VCD_002657 PF04993 TfoX N-terminal domain VCD_002657 PF04994 TfoX C-terminal domain VCD_002658 PF00356 Bacterial regulatory proteins, lacI family VCD_002659 PF02613 Nitrate reductase delta subunit VCD_002660 PF00072 Response regulator receiver domain VCD_002660 PF00486 Transcriptional regulatory protein, C terminal VCD_002661 PF02698 DUF218 domain VCD_002663 PF17192 MukF middle domain VCD_002663 PF17193 MukF C-terminal domain VCD_002663 PF03882 MukF winged-helix domain VCD_002664 PF04288 MukE-like family VCD_002665 PF16330 MukB hinge domain VCD_002665 PF04310 MukB N-terminal VCD_002666 PF01037 Lrp/AsnC ligand binding domain VCD_002667 PF01810 LysE type translocator VCD_002668 PF08497 Radical SAM N-terminal VCD_002668 PF11842 Domain of unknown function (DUF3362) VCD_002668 PF04055 Radical SAM superfamily VCD_002669 PF00563 EAL domain VCD_002669 PF00990 Diguanylate cyclase, GGDEF domain VCD_002669 PF03707 Bacterial signalling protein N terminal repeat VCD_002670 PF05193 Peptidase M16 inactive domain VCD_002670 PF00675 Insulinase (Peptidase family M16) VCD_002673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002673 PF03466 LysR substrate binding domain VCD_002674 PF08267 Cobalamin-independent synthase, N-terminal domain VCD_002674 PF01717 Cobalamin-independent synthase, Catalytic domain VCD_002676 PF03795 YCII-related domain VCD_002677 PF03061 Thioesterase superfamily VCD_002678 PF04279 Intracellular septation protein A VCD_002680 PF02698 DUF218 domain VCD_002681 PF01370 NAD dependent epimerase/dehydratase family VCD_002683 PF01226 Formate/nitrite transporter VCD_002684 PF06796 Periplasmic nitrate reductase protein NapE VCD_002685 PF03264 NapC/NirT cytochrome c family, N-terminal region VCD_002686 PF01568 Molydopterin dinucleotide binding domain VCD_002686 PF18364 Molybdopterin oxidoreductase N-terminal domain VCD_002686 PF00384 Molybdopterin oxidoreductase VCD_002690 PF01368 DHH family VCD_002690 PF02833 DHHA2 domain VCD_002693 PF00005 ABC transporter VCD_002694 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_002694 PF00005 ABC transporter VCD_002695 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_002695 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002696 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002697 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_002698 PF00158 Sigma-54 interaction domain VCD_002698 PF02954 Bacterial regulatory protein, Fis family VCD_002699 PF04012 PspA/IM30 family VCD_002702 PF00529 HlyD membrane-fusion protein of T1SS VCD_002702 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_002703 PF13533 Biotin-lipoyl like VCD_002704 PF00873 AcrB/AcrD/AcrF family VCD_002705 PF03352 Methyladenine glycosylase VCD_002706 PF01053 Cys/Met metabolism PLP-dependent enzyme VCD_002707 PF13396 Phospholipase_D-nuclease N-terminal VCD_002707 PF13091 PLD-like domain VCD_002708 PF00209 Sodium:neurotransmitter symporter family VCD_002710 PF00849 RNA pseudouridylate synthase VCD_002711 PF01066 CDP-alcohol phosphatidyltransferase VCD_002712 PF00005 ABC transporter VCD_002713 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002714 PF13416 Bacterial extracellular solute-binding protein VCD_002716 PF06945 Protein of unknown function (DUF1289) VCD_002719 PF00005 ABC transporter VCD_002720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_002721 PF03222 Tryptophan/tyrosine permease family VCD_002723 PF03448 MgtE intracellular N domain VCD_002723 PF01769 Divalent cation transporter VCD_002723 PF00571 CBS domain VCD_002724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002724 PF00512 His Kinase A (phospho-acceptor) domain VCD_002724 PF00072 Response regulator receiver domain VCD_002724 PF09308 LuxQ, periplasmic VCD_002725 PF03707 Bacterial signalling protein N terminal repeat VCD_002725 PF00990 Diguanylate cyclase, GGDEF domain VCD_002725 PF00563 EAL domain VCD_002727 PF01752 Collagenase VCD_002727 PF08453 Peptidase family M9 N-terminal VCD_002727 PF04151 Bacterial pre-peptidase C-terminal domain VCD_002729 PF12793 Sugar transport-related sRNA regulator N-term VCD_002729 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_002732 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002732 PF00672 HAMP domain VCD_002732 PF12729 Four helix bundle sensory module for signal transduction VCD_002734 PF00360 Phytochrome region VCD_002734 PF00563 EAL domain VCD_002734 PF01590 GAF domain VCD_002734 PF00990 Diguanylate cyclase, GGDEF domain VCD_002735 PF01386 Ribosomal L25p family VCD_002737 PF00072 Response regulator receiver domain VCD_002737 PF00486 Transcriptional regulatory protein, C terminal VCD_002739 PF00271 Helicase conserved C-terminal domain VCD_002739 PF04851 Type III restriction enzyme, res subunit VCD_002740 PF01479 S4 domain VCD_002740 PF00849 RNA pseudouridylate synthase VCD_002741 PF07690 Major Facilitator Superfamily VCD_002743 PF11066 Protein of unknown function (DUF2867) VCD_002743 PF13460 NAD(P)H-binding VCD_002744 PF01554 MatE VCD_002745 PF00005 ABC transporter VCD_002748 PF06965 Na+/H+ antiporter 1 VCD_002749 PF00282 Pyridoxal-dependent decarboxylase conserved domain VCD_002750 PF16653 Saccharopine dehydrogenase C-terminal domain VCD_002750 PF03435 Saccharopine dehydrogenase NADP binding domain VCD_002753 PF05736 OprF membrane domain VCD_002753 PF00691 OmpA family VCD_002754 PF02321 Outer membrane efflux protein VCD_002759 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002759 PF03466 LysR substrate binding domain VCD_002761 PF01863 Protein of unknown function DUF45 VCD_002762 PF05971 RNA methyltransferase VCD_002765 PF04204 Homoserine O-succinyltransferase VCD_002769 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_002771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002771 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VCD_002771 PF17203 Single cache domain 3 VCD_002771 PF00989 PAS fold VCD_002772 PF00072 Response regulator receiver domain VCD_002772 PF12431 Transcriptional regulator VCD_002774 PF01584 CheW-like domain VCD_002774 PF00072 Response regulator receiver domain VCD_002777 PF00072 Response regulator receiver domain VCD_002777 PF00990 Diguanylate cyclase, GGDEF domain VCD_002779 PF07690 Major Facilitator Superfamily VCD_002780 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VCD_002780 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VCD_002781 PF10509 Galactokinase galactose-binding signature VCD_002781 PF00288 GHMP kinases N terminal domain VCD_002781 PF08544 GHMP kinases C terminal VCD_002782 PF01263 Aldose 1-epimerase VCD_002783 PF00990 Diguanylate cyclase, GGDEF domain VCD_002784 PF00990 Diguanylate cyclase, GGDEF domain VCD_002784 PF00563 EAL domain VCD_002784 PF17154 Gammaproteobacterial periplasmic sensor domain VCD_002784 PF00672 HAMP domain VCD_002786 PF00205 Thiamine pyrophosphate enzyme, central domain VCD_002786 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCD_002786 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_002789 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002789 PF03466 LysR substrate binding domain VCD_002792 PF00199 Catalase VCD_002792 PF06628 Catalase-related immune-responsive VCD_002794 PF00080 Copper/zinc superoxide dismutase (SODC) VCD_002795 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) VCD_002796 PF00361 Proton-conducting membrane transporter VCD_002796 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VCD_002797 PF03466 LysR substrate binding domain VCD_002797 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002798 PF00501 AMP-binding enzyme VCD_002798 PF13193 AMP-binding enzyme C-terminal domain VCD_002804 PF00206 Lyase VCD_002804 PF10415 Fumarase C C-terminus VCD_002806 PF01654 Cytochrome bd terminal oxidase subunit I VCD_002807 PF02322 Cytochrome bd terminal oxidase subunit II VCD_002808 PF02687 FtsX-like permease family VCD_002808 PF00005 ABC transporter VCD_002808 PF12704 MacB-like periplasmic core domain VCD_002809 PF02687 FtsX-like permease family VCD_002809 PF12704 MacB-like periplasmic core domain VCD_002809 PF00005 ABC transporter VCD_002810 PF00005 ABC transporter VCD_002810 PF02687 FtsX-like permease family VCD_002810 PF12704 MacB-like periplasmic core domain VCD_002812 PF00529 HlyD membrane-fusion protein of T1SS VCD_002814 PF03466 LysR substrate binding domain VCD_002814 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002815 PF00141 Peroxidase VCD_002817 PF00232 Glycosyl hydrolase family 1 VCD_002818 PF00356 Bacterial regulatory proteins, lacI family VCD_002819 PF01042 Endoribonuclease L-PSP VCD_002820 PF04074 YhcH/YjgK/YiaL VCD_002821 PF03009 Glycerophosphoryl diester phosphodiesterase family VCD_002822 PF08220 DeoR-like helix-turn-helix domain VCD_002822 PF00455 DeoR C terminal sensor domain VCD_002823 PF17912 MalK OB fold domain VCD_002823 PF00005 ABC transporter VCD_002824 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002825 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002826 PF13416 Bacterial extracellular solute-binding protein VCD_002828 PF01618 MotA/TolQ/ExbB proton channel family VCD_002829 PF01618 MotA/TolQ/ExbB proton channel family VCD_002830 PF02472 Biopolymer transport protein ExbD/TolR VCD_002831 PF03544 Gram-negative bacterial TonB protein C-terminal VCD_002833 PF01068 ATP dependent DNA ligase domain VCD_002833 PF14743 DNA ligase OB-like domain VCD_002835 PF01554 MatE VCD_002839 PF00877 NlpC/P60 family VCD_002840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002840 PF00672 HAMP domain VCD_002840 PF02743 Cache domain VCD_002844 PF00480 ROK family VCD_002848 PF00994 Probable molybdopterin binding domain VCD_002848 PF03454 MoeA C-terminal region (domain IV) VCD_002848 PF03453 MoeA N-terminal region (domain I and II) VCD_002849 PF12804 MobA-like NTP transferase domain VCD_002850 PF08402 TOBE domain VCD_002850 PF00005 ABC transporter VCD_002851 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002852 PF12849 PBP superfamily domain VCD_002853 PF00158 Sigma-54 interaction domain VCD_002853 PF02954 Bacterial regulatory protein, Fis family VCD_002853 PF00072 Response regulator receiver domain VCD_002854 PF00989 PAS fold VCD_002854 PF00512 His Kinase A (phospho-acceptor) domain VCD_002854 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002855 PF00005 ABC transporter VCD_002855 PF12848 ABC transporter VCD_002856 PF02634 FdhD/NarQ family VCD_002860 PF02613 Nitrate reductase delta subunit VCD_002862 PF01568 Molydopterin dinucleotide binding domain VCD_002862 PF00384 Molybdopterin oxidoreductase VCD_002862 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VCD_002863 PF13247 4Fe-4S dicluster domain VCD_002866 PF02146 Sir2 family VCD_002867 PF04461 Protein of unknown function (DUF520) VCD_002868 PF00793 DAHP synthetase I family VCD_002871 PF17783 CvfB-like winged helix domain VCD_002871 PF13509 S1 domain VCD_002872 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VCD_002872 PF01189 16S rRNA methyltransferase RsmB/F VCD_002872 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VCD_002873 PF02470 MlaD protein VCD_002874 PF04403 Paraquat-inducible protein A VCD_002875 PF00664 ABC transporter transmembrane region VCD_002875 PF00005 ABC transporter VCD_002876 PF13185 GAF domain VCD_002877 PF17516 ProQ C-terminal domain VCD_002877 PF04352 ProQ/FINO family VCD_002878 PF17804 Tail specific protease N-terminal domain VCD_002878 PF11818 C-terminal domain of tail specific protease (DUF3340) VCD_002878 PF00595 PDZ domain VCD_002878 PF03572 Peptidase family S41 VCD_002880 PF01433 Peptidase family M1 domain VCD_002880 PF11940 Domain of unknown function (DUF3458) Ig-like fold VCD_002880 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VCD_002882 PF05088 Bacterial NAD-glutamate dehydrogenase VCD_002883 PF01180 Dihydroorotate dehydrogenase VCD_002884 PF07126 Cell-division protein ZapC VCD_002885 PF02926 THUMP domain VCD_002885 PF10672 S-adenosylmethionine-dependent methyltransferase VCD_002885 PF01170 Putative RNA methylase family UPF0020 VCD_002889 PF04957 Ribosome modulation factor VCD_002890 PF07977 FabA-like domain VCD_002891 PF05362 Lon protease (S16) C-terminal proteolytic domain VCD_002891 PF13654 AAA domain VCD_002892 PF17414 MatP C-terminal ribbon-helix-helix domain VCD_002892 PF06303 MatP N-terminal domain VCD_002895 PF12146 Serine aminopeptidase, S33 VCD_002895 PF07634 RtxA repeat VCD_002895 PF11647 Membrane Localization Domain VCD_002895 PF16671 Actin cross-linking domain VCD_002895 PF11713 Peptidase C80 family VCD_002896 PF02794 RTX toxin acyltransferase family VCD_002898 PF00005 ABC transporter VCD_002898 PF00664 ABC transporter transmembrane region VCD_002898 PF03412 Peptidase C39 family VCD_002900 PF03412 Peptidase C39 family VCD_002900 PF00005 ABC transporter VCD_002900 PF00664 ABC transporter transmembrane region VCD_002901 PF09308 LuxQ, periplasmic VCD_002901 PF00072 Response regulator receiver domain VCD_002901 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002901 PF00512 His Kinase A (phospho-acceptor) domain VCD_002904 PF00115 Cytochrome C and Quinol oxidase polypeptide I VCD_002907 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCD_002907 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VCD_002909 PF00403 Heavy-metal-associated domain VCD_002912 PF00027 Cyclic nucleotide-binding domain VCD_002912 PF13545 Crp-like helix-turn-helix domain VCD_002913 PF00582 Universal stress protein family VCD_002914 PF01171 PP-loop family VCD_002918 PF08402 TOBE domain VCD_002918 PF00005 ABC transporter VCD_002919 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002920 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002921 PF13416 Bacterial extracellular solute-binding protein VCD_002922 PF13416 Bacterial extracellular solute-binding protein VCD_002925 PF01235 Sodium:alanine symporter family VCD_002926 PF01810 LysE type translocator VCD_002931 PF16671 Actin cross-linking domain VCD_002931 PF04717 Type VI secretion system, phage-baseplate injector VCD_002932 PF05638 Type VI secretion system effector, Hcp VCD_002933 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VCD_002934 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002934 PF00672 HAMP domain VCD_002934 PF02743 Cache domain VCD_002935 PF07690 Major Facilitator Superfamily VCD_002936 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_002936 PF00529 HlyD membrane-fusion protein of T1SS VCD_002937 PF02321 Outer membrane efflux protein VCD_002939 PF00270 DEAD/DEAH box helicase VCD_002939 PF00271 Helicase conserved C-terminal domain VCD_002940 PF13426 PAS domain VCD_002940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002940 PF08447 PAS fold VCD_002941 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002941 PF12729 Four helix bundle sensory module for signal transduction VCD_002941 PF00672 HAMP domain VCD_002942 PF17202 Single cache domain 3 VCD_002942 PF00672 HAMP domain VCD_002942 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002943 PF01584 CheW-like domain VCD_002944 PF01339 CheB methylesterase VCD_002944 PF00072 Response regulator receiver domain VCD_002946 PF01739 CheR methyltransferase, SAM binding domain VCD_002946 PF03705 CheR methyltransferase, all-alpha domain VCD_002947 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002947 PF00072 Response regulator receiver domain VCD_002947 PF01627 Hpt domain VCD_002947 PF01584 CheW-like domain VCD_002948 PF01584 CheW-like domain VCD_002948 PF02895 Signal transducing histidine kinase, homodimeric domain VCD_002948 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002948 PF01627 Hpt domain VCD_002948 PF07194 P2 response regulator binding domain VCD_002951 PF00672 HAMP domain VCD_002951 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_002952 PF00893 Small Multidrug Resistance protein VCD_002953 PF03441 FAD binding domain of DNA photolyase VCD_002953 PF00875 DNA photolyase VCD_002954 PF07690 Major Facilitator Superfamily VCD_002955 PF03466 LysR substrate binding domain VCD_002955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_002957 PF03099 Biotin/lipoate A/B protein ligase family VCD_002957 PF10437 Bacterial lipoate protein ligase C-terminus VCD_002959 PF00012 Hsp70 protein VCD_002961 PF04408 Helicase associated domain (HA2) VCD_002961 PF00271 Helicase conserved C-terminal domain VCD_002961 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VCD_002961 PF00270 DEAD/DEAH box helicase VCD_002961 PF11898 Domain of unknown function (DUF3418) VCD_002965 PF00990 Diguanylate cyclase, GGDEF domain VCD_002965 PF03707 Bacterial signalling protein N terminal repeat VCD_002965 PF00563 EAL domain VCD_002967 PF00012 Hsp70 protein VCD_002968 PF00012 Hsp70 protein VCD_002969 PF00990 Diguanylate cyclase, GGDEF domain VCD_002969 PF17158 Membrane-associated sensor, integral membrane domain VCD_002971 PF00563 EAL domain VCD_002971 PF00990 Diguanylate cyclase, GGDEF domain VCD_002971 PF03707 Bacterial signalling protein N terminal repeat VCD_002975 PF06508 Queuosine biosynthesis protein QueC VCD_002976 PF04055 Radical SAM superfamily VCD_002978 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCD_002978 PF14824 Sirohaem biosynthesis protein central VCD_002978 PF10414 Sirohaem synthase dimerisation region VCD_002979 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_002980 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002981 PF00528 Binding-protein-dependent transport system inner membrane component VCD_002982 PF00005 ABC transporter VCD_002983 PF01027 Inhibitor of apoptosis-promoting Bax1 VCD_002984 PF04358 DsrC like protein VCD_002985 PF00708 Acylphosphatase VCD_002986 PF17785 PUA-like domain VCD_002986 PF10672 S-adenosylmethionine-dependent methyltransferase VCD_002987 PF00990 Diguanylate cyclase, GGDEF domain VCD_002989 PF00462 Glutaredoxin VCD_002989 PF08534 Redoxin VCD_002990 PF00512 His Kinase A (phospho-acceptor) domain VCD_002990 PF01627 Hpt domain VCD_002990 PF00072 Response regulator receiver domain VCD_002990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_002990 PF00672 HAMP domain VCD_002990 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCD_002991 PF00072 Response regulator receiver domain VCD_002992 PF02798 Glutathione S-transferase, N-terminal domain VCD_002992 PF14497 Glutathione S-transferase, C-terminal domain VCD_002994 PF04209 homogentisate 1,2-dioxygenase VCD_002995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_002996 PF01546 Peptidase family M20/M25/M40 VCD_002996 PF07687 Peptidase dimerisation domain VCD_002999 PF16177 Acetyl-coenzyme A synthetase N-terminus VCD_002999 PF13193 AMP-binding enzyme C-terminal domain VCD_002999 PF00501 AMP-binding enzyme VCD_003000 PF04303 PrpF protein VCD_003001 PF00694 Aconitase C-terminal domain VCD_003001 PF00330 Aconitase family (aconitate hydratase) VCD_003002 PF00285 Citrate synthase, C-terminal domain VCD_003004 PF07729 FCD domain VCD_003004 PF00392 Bacterial regulatory proteins, gntR family VCD_003007 PF01970 Tripartite tricarboxylate transporter TctA family VCD_003010 PF02653 Branched-chain amino acid transport system / permease component VCD_003011 PF00005 ABC transporter VCD_003012 PF13407 Periplasmic binding protein domain VCD_003016 PF00072 Response regulator receiver domain VCD_003016 PF00486 Transcriptional regulatory protein, C terminal VCD_003017 PF00672 HAMP domain VCD_003017 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003017 PF00512 His Kinase A (phospho-acceptor) domain VCD_003018 PF06629 MltA-interacting protein MipA VCD_003019 PF04393 Protein of unknown function (DUF535) VCD_003020 PF00072 Response regulator receiver domain VCD_003020 PF00158 Sigma-54 interaction domain VCD_003020 PF02954 Bacterial regulatory protein, Fis family VCD_003021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003021 PF00512 His Kinase A (phospho-acceptor) domain VCD_003021 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_003022 PF00939 Sodium:sulfate symporter transmembrane region VCD_003023 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_003023 PF00672 HAMP domain VCD_003024 PF01168 Alanine racemase, N-terminal domain VCD_003024 PF00842 Alanine racemase, C-terminal domain VCD_003025 PF00892 EamA-like transporter family VCD_003027 PF13302 Acetyltransferase (GNAT) domain VCD_003028 PF18024 Helix-turn-helix domain VCD_003028 PF00158 Sigma-54 interaction domain VCD_003029 PF05128 Domain of unknown function (DUF697) VCD_003030 PF04317 YcjX-like family, DUF463 VCD_003033 PF00425 chorismate binding enzyme VCD_003033 PF04715 Anthranilate synthase component I, N terminal region VCD_003034 PF00293 NUDIX domain VCD_003035 PF03222 Tryptophan/tyrosine permease family VCD_003036 PF03313 Serine dehydratase alpha chain VCD_003036 PF03315 Serine dehydratase beta chain VCD_003037 PF01242 6-pyruvoyl tetrahydropterin synthase VCD_003044 PF11867 Domain of unknown function (DUF3387) VCD_003044 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_003044 PF18766 SWI2/SNF2 ATPase VCD_003046 PF02384 N-6 DNA Methylase VCD_003049 PF07804 HipA-like C-terminal domain VCD_003049 PF13657 HipA N-terminal domain VCD_003053 PF00672 HAMP domain VCD_003053 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_003054 PF01336 OB-fold nucleic acid binding domain VCD_003054 PF00152 tRNA synthetases class II (D, K and N) VCD_003055 PF08543 Phosphomethylpyrimidine kinase VCD_003056 PF00672 HAMP domain VCD_003056 PF01966 HD domain VCD_003058 PF00155 Aminotransferase class I and II VCD_003061 PF17200 Single Cache domain 2 VCD_003061 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_003061 PF00672 HAMP domain VCD_003062 PF04349 Periplasmic glucan biosynthesis protein, MdoG VCD_003063 PF13506 Glycosyl transferase family 21 VCD_003064 PF00356 Bacterial regulatory proteins, lacI family VCD_003065 PF04794 YdjC-like protein VCD_003066 PF02056 Family 4 glycosyl hydrolase VCD_003066 PF11975 Family 4 glycosyl hydrolase C-terminal domain VCD_003067 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VCD_003068 PF02378 Phosphotransferase system, EIIC VCD_003069 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCD_003070 PF01522 Polysaccharide deacetylase VCD_003071 PF02028 BCCT, betaine/carnitine/choline family transporter VCD_003072 PF01047 MarR family VCD_003073 PF00072 Response regulator receiver domain VCD_003073 PF00196 Bacterial regulatory proteins, luxR family VCD_003074 PF07730 Histidine kinase VCD_003074 PF17200 Single Cache domain 2 VCD_003076 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCD_003078 PF03480 Bacterial extracellular solute-binding protein, family 7 VCD_003081 PF00753 Metallo-beta-lactamase superfamily VCD_003082 PF05951 Bacterial protein of unknown function (DUF882) VCD_003083 PF01471 Putative peptidoglycan binding domain VCD_003083 PF03734 L,D-transpeptidase catalytic domain VCD_003088 PF00925 GTP cyclohydrolase II VCD_003090 PF07690 Major Facilitator Superfamily VCD_003093 PF03989 DNA gyrase C-terminal domain, beta-propeller VCD_003093 PF00521 DNA gyrase/topoisomerase IV, subunit A VCD_003095 PF00317 Ribonucleotide reductase, all-alpha domain VCD_003095 PF02867 Ribonucleotide reductase, barrel domain VCD_003095 PF03477 ATP cone domain VCD_003096 PF00268 Ribonucleotide reductase, small chain VCD_003097 PF00970 Oxidoreductase FAD-binding domain VCD_003097 PF00175 Oxidoreductase NAD-binding domain VCD_003097 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_003099 PF00994 Probable molybdopterin binding domain VCD_003102 PF00672 HAMP domain VCD_003102 PF17200 Single Cache domain 2 VCD_003102 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_003105 PF00005 ABC transporter VCD_003106 PF01032 FecCD transport family VCD_003107 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VCD_003109 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VCD_003110 PF02654 Cobalamin-5-phosphate synthase VCD_003111 PF02277 Phosphoribosyltransferase VCD_003113 PF01641 SelR domain VCD_003115 PF00929 Exonuclease VCD_003115 PF08411 Exonuclease C-terminal VCD_003116 PF03788 LrgA family VCD_003117 PF04172 LrgB-like family VCD_003118 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_003118 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_003120 PF02222 ATP-grasp domain VCD_003121 PF05724 Thiopurine S-methyltransferase (TPMT) VCD_003123 PF00216 Bacterial DNA-binding protein VCD_003125 PF03483 B3/4 domain VCD_003125 PF03147 Ferredoxin-fold anticodon binding domain VCD_003125 PF03484 tRNA synthetase B5 domain VCD_003125 PF01588 Putative tRNA binding domain VCD_003125 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VCD_003126 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VCD_003126 PF01409 tRNA synthetases class II core domain (F) VCD_003128 PF00072 Response regulator receiver domain VCD_003128 PF00990 Diguanylate cyclase, GGDEF domain VCD_003129 PF01066 CDP-alcohol phosphatidyltransferase VCD_003130 PF08459 UvrC Helix-hairpin-helix N-terminal VCD_003130 PF02151 UvrB/uvrC motif VCD_003130 PF01541 GIY-YIG catalytic domain VCD_003131 PF00072 Response regulator receiver domain VCD_003131 PF00196 Bacterial regulatory proteins, luxR family VCD_003132 PF00136 DNA polymerase family B VCD_003132 PF03104 DNA polymerase family B, exonuclease domain VCD_003133 PF13426 PAS domain VCD_003133 PF00563 EAL domain VCD_003133 PF00990 Diguanylate cyclase, GGDEF domain VCD_003135 PF09285 Elongation factor P, C-terminal VCD_003135 PF08207 Elongation factor P (EF-P) KOW-like domain VCD_003135 PF01132 Elongation factor P (EF-P) OB domain VCD_003136 PF04269 Protein of unknown function, DUF440 VCD_003138 PF07702 UTRA domain VCD_003138 PF00392 Bacterial regulatory proteins, gntR family VCD_003139 PF01979 Amidohydrolase family VCD_003140 PF00491 Arginase family VCD_003141 PF17391 Urocanase N-terminal domain VCD_003141 PF01175 Urocanase Rossmann-like domain VCD_003141 PF17392 Urocanase C-terminal domain VCD_003142 PF00221 Aromatic amino acid lyase VCD_003144 PF00089 Trypsin VCD_003145 PF04191 Phospholipid methyltransferase VCD_003146 PF02913 FAD linked oxidases, C-terminal domain VCD_003146 PF13183 4Fe-4S dicluster domain VCD_003146 PF01565 FAD binding domain VCD_003149 PF00691 OmpA family VCD_003149 PF13488 Glycine zipper VCD_003153 PF01259 SAICAR synthetase VCD_003155 PF00390 Malic enzyme, N-terminal domain VCD_003155 PF03949 Malic enzyme, NAD binding domain VCD_003157 PF02698 DUF218 domain VCD_003158 PF08448 PAS fold VCD_003158 PF00990 Diguanylate cyclase, GGDEF domain VCD_003159 PF00266 Aminotransferase class-V VCD_003161 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_003162 PF00664 ABC transporter transmembrane region VCD_003162 PF00005 ABC transporter VCD_003163 PF00005 ABC transporter VCD_003163 PF00664 ABC transporter transmembrane region VCD_003164 PF01479 S4 domain VCD_003164 PF00849 RNA pseudouridylate synthase VCD_003165 PF01300 Telomere recombination VCD_003166 PF02811 PHP domain VCD_003167 PF08056 Tryptophan operon leader peptide VCD_003169 PF00425 chorismate binding enzyme VCD_003169 PF04715 Anthranilate synthase component I, N terminal region VCD_003170 PF00117 Glutamine amidotransferase class-I VCD_003171 PF02885 Glycosyl transferase family, helical bundle domain VCD_003171 PF00591 Glycosyl transferase family, a/b domain VCD_003172 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VCD_003172 PF00218 Indole-3-glycerol phosphate synthase VCD_003173 PF00291 Pyridoxal-phosphate dependent enzyme VCD_003174 PF00290 Tryptophan synthase alpha chain VCD_003175 PF00375 Sodium:dicarboxylate symporter family VCD_003176 PF00265 Thymidine kinase VCD_003177 PF00152 tRNA synthetases class II (D, K and N) VCD_003177 PF02938 GAD domain VCD_003177 PF01336 OB-fold nucleic acid binding domain VCD_003178 PF01904 Protein of unknown function DUF72 VCD_003179 PF13649 Methyltransferase domain VCD_003180 PF08003 Protein of unknown function (DUF1698) VCD_003181 PF18030 RimK PreATP-grasp domain VCD_003181 PF08443 RimK-like ATP-grasp domain VCD_003184 PF00266 Aminotransferase class-V VCD_003186 PF00989 PAS fold VCD_003186 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003186 PF00512 His Kinase A (phospho-acceptor) domain VCD_003189 PF04993 TfoX N-terminal domain VCD_003189 PF04994 TfoX C-terminal domain VCD_003191 PF03956 Lysine exporter LysO VCD_003193 PF00282 Pyridoxal-dependent decarboxylase conserved domain VCD_003194 PF01418 Helix-turn-helix domain, rpiR family VCD_003194 PF01380 SIS domain VCD_003195 PF00171 Aldehyde dehydrogenase family VCD_003195 PF00465 Iron-containing alcohol dehydrogenase VCD_003196 PF00462 Glutaredoxin VCD_003197 PF06826 Predicted Permease Membrane Region VCD_003197 PF02080 TrkA-C domain VCD_003198 PF02861 Clp amino terminal domain, pathogenicity island component VCD_003198 PF17871 AAA lid domain VCD_003198 PF00004 ATPase family associated with various cellular activities (AAA) VCD_003198 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_003198 PF07724 AAA domain (Cdc48 subfamily) VCD_003199 PF02617 ATP-dependent Clp protease adaptor protein ClpS VCD_003200 PF00313 'Cold-shock' DNA-binding domain VCD_003201 PF03971 Monomeric isocitrate dehydrogenase VCD_003202 PF00849 RNA pseudouridylate synthase VCD_003203 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VCD_003203 PF01502 Phosphoribosyl-AMP cyclohydrolase VCD_003204 PF00977 Histidine biosynthesis protein VCD_003205 PF00977 Histidine biosynthesis protein VCD_003206 PF00117 Glutamine amidotransferase class-I VCD_003207 PF08645 Polynucleotide kinase 3 phosphatase VCD_003207 PF00475 Imidazoleglycerol-phosphate dehydratase VCD_003208 PF00155 Aminotransferase class I and II VCD_003209 PF00815 Histidinol dehydrogenase VCD_003210 PF01634 ATP phosphoribosyltransferase VCD_003210 PF08029 HisG, C-terminal domain VCD_003211 PF03553 Na+/H+ antiporter family VCD_003212 PF00816 H-NS histone family VCD_003213 PF00294 pfkB family carbohydrate kinase VCD_003215 PF04356 Protein of unknown function (DUF489) VCD_003216 PF00206 Lyase VCD_003216 PF08328 Adenylosuccinate lyase C-terminal VCD_003218 PF16036 Chalcone isomerase-like VCD_003223 PF00106 short chain dehydrogenase VCD_003225 PF01435 Peptidase family M48 VCD_003228 PF08241 Methyltransferase domain VCD_003229 PF00155 Aminotransferase class I and II VCD_003230 PF04055 Radical SAM superfamily VCD_003230 PF06968 Biotin and Thiamin Synthesis associated domain VCD_003231 PF00202 Aminotransferase class-III VCD_003232 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCD_003232 PF02403 Seryl-tRNA synthetase N-terminal domain VCD_003233 PF16193 AAA C-terminal domain VCD_003233 PF00004 ATPase family associated with various cellular activities (AAA) VCD_003233 PF12002 MgsA AAA+ ATPase C terminal VCD_003234 PF03548 Outer membrane lipoprotein carrier protein LolA VCD_003235 PF07516 SecA Wing and Scaffold domain VCD_003235 PF01043 SecA preprotein cross-linking domain VCD_003235 PF07517 SecA DEAD-like domain VCD_003235 PF02810 SEC-C motif VCD_003236 PF01207 Dihydrouridine synthase (Dus) VCD_003237 PF00990 Diguanylate cyclase, GGDEF domain VCD_003238 PF00005 ABC transporter VCD_003239 PF02653 Branched-chain amino acid transport system / permease component VCD_003241 PF09905 DNA-binding protein VF530 VCD_003242 PF04217 Protein of unknown function, DUF412 VCD_003243 PF00871 Acetokinase family VCD_003244 PF07085 DRTGG domain VCD_003244 PF01515 Phosphate acetyl/butaryl transferase VCD_003245 PF13409 Glutathione S-transferase, N-terminal domain VCD_003246 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_003246 PF00005 ABC transporter VCD_003247 PF00005 ABC transporter VCD_003247 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_003248 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_003248 PF00528 Binding-protein-dependent transport system inner membrane component VCD_003249 PF00528 Binding-protein-dependent transport system inner membrane component VCD_003250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_003252 PF08448 PAS fold VCD_003252 PF13188 PAS domain VCD_003252 PF00512 His Kinase A (phospho-acceptor) domain VCD_003252 PF00072 Response regulator receiver domain VCD_003252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003253 PF00158 Sigma-54 interaction domain VCD_003253 PF00072 Response regulator receiver domain VCD_003253 PF02954 Bacterial regulatory protein, Fis family VCD_003254 PF00990 Diguanylate cyclase, GGDEF domain VCD_003254 PF13188 PAS domain VCD_003254 PF03707 Bacterial signalling protein N terminal repeat VCD_003254 PF00563 EAL domain VCD_003255 PF00512 His Kinase A (phospho-acceptor) domain VCD_003255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003256 PF13426 PAS domain VCD_003256 PF00512 His Kinase A (phospho-acceptor) domain VCD_003256 PF00989 PAS fold VCD_003256 PF13188 PAS domain VCD_003258 PF00072 Response regulator receiver domain VCD_003261 PF03481 Putative GTP-binding controlling metal-binding VCD_003261 PF01300 Telomere recombination VCD_003266 PF01161 Phosphatidylethanolamine-binding protein VCD_003268 PF06483 Chitinase C VCD_003268 PF00704 Glycosyl hydrolases family 18 VCD_003271 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_003271 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCD_003272 PF01022 Bacterial regulatory protein, arsR family VCD_003274 PF00990 Diguanylate cyclase, GGDEF domain VCD_003274 PF08448 PAS fold VCD_003277 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VCD_003280 PF01037 Lrp/AsnC ligand binding domain VCD_003280 PF13404 AsnC-type helix-turn-helix domain VCD_003281 PF00291 Pyridoxal-phosphate dependent enzyme VCD_003282 PF08496 Peptidase family S49 N-terminal VCD_003282 PF01343 Peptidase family S49 VCD_003283 PF00106 short chain dehydrogenase VCD_003284 PF03692 Putative zinc- or iron-chelating domain VCD_003285 PF03692 Putative zinc- or iron-chelating domain VCD_003286 PF02132 RecR protein VCD_003286 PF13662 Toprim domain VCD_003287 PF02575 YbaB/EbfC DNA-binding family VCD_003288 PF12170 DNA polymerase III tau subunit V interacting with alpha VCD_003288 PF12169 DNA polymerase III subunits gamma and tau domain III VCD_003288 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VCD_003289 PF00156 Phosphoribosyl transferase domain VCD_003290 PF04304 Protein of unknown function (DUF454) VCD_003292 PF00072 Response regulator receiver domain VCD_003293 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_003293 PF03466 LysR substrate binding domain VCD_003294 PF00881 Nitroreductase family VCD_003295 PF00378 Enoyl-CoA hydratase/isomerase VCD_003295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCD_003295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCD_003296 PF02803 Thiolase, C-terminal domain VCD_003296 PF00108 Thiolase, N-terminal domain VCD_003297 PF08281 Sigma-70, region 4 VCD_003297 PF04542 Sigma-70 region 2 VCD_003299 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCD_003300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCD_003301 PF01451 Low molecular weight phosphotyrosine protein phosphatase VCD_003302 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VCD_003302 PF12557 Cob(I)alamin adenosyltransferase N terminal VCD_003303 PF05170 AsmA family VCD_003304 PF00485 Phosphoribulokinase / Uridine kinase family VCD_003305 PF10609 NUBPL iron-transfer P-loop NTPase VCD_003306 PF01588 Putative tRNA binding domain VCD_003306 PF09334 tRNA synthetases class I (M) VCD_003308 PF01048 Phosphorylase superfamily VCD_003309 PF00403 Heavy-metal-associated domain VCD_003310 PF00392 Bacterial regulatory proteins, gntR family VCD_003310 PF07085 DRTGG domain VCD_003310 PF03061 Thioesterase superfamily VCD_003310 PF00571 CBS domain VCD_003311 PF00990 Diguanylate cyclase, GGDEF domain VCD_003311 PF07694 5TMR of 5TMR-LYT VCD_003312 PF02391 MoaE protein VCD_003313 PF02597 ThiS family VCD_003314 PF01967 MoaC family VCD_003315 PF00994 Probable molybdopterin binding domain VCD_003316 PF06463 Molybdenum Cofactor Synthesis C VCD_003316 PF04055 Radical SAM superfamily VCD_003317 PF01933 Uncharacterised protein family UPF0052 VCD_003318 PF01627 Hpt domain VCD_003319 PF00072 Response regulator receiver domain VCD_003319 PF02954 Bacterial regulatory protein, Fis family VCD_003319 PF00158 Sigma-54 interaction domain VCD_003320 PF02151 UvrB/uvrC motif VCD_003320 PF12344 Ultra-violet resistance protein B VCD_003320 PF04851 Type III restriction enzyme, res subunit VCD_003320 PF17757 UvrB interaction domain VCD_003320 PF00271 Helicase conserved C-terminal domain VCD_003321 PF02508 Rnf-Nqr subunit, membrane protein VCD_003322 PF04060 Putative Fe-S cluster VCD_003323 PF13375 RnfC Barrel sandwich hybrid domain VCD_003323 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VCD_003323 PF12838 4Fe-4S dicluster domain VCD_003323 PF10531 SLBB domain VCD_003324 PF03116 NQR2, RnfD, RnfE family VCD_003325 PF04205 FMN-binding domain VCD_003326 PF02508 Rnf-Nqr subunit, membrane protein VCD_003327 PF00633 Helix-hairpin-helix motif VCD_003327 PF10576 Iron-sulfur binding domain of endonuclease III VCD_003327 PF00730 HhH-GPD superfamily base excision DNA repair protein VCD_003328 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_003329 PF10952 Protein of unknown function (DUF2753) VCD_003330 PF18393 MotY N-terminal domain VCD_003330 PF00691 OmpA family VCD_003332 PF00929 Exonuclease VCD_003333 PF03553 Na+/H+ antiporter family VCD_003333 PF13726 Na+-H+ antiporter family VCD_003334 PF00156 Phosphoribosyl transferase domain VCD_003335 PF02674 Colicin V production protein VCD_003336 PF05036 Sporulation related domain VCD_003337 PF02875 Mur ligase family, glutamate ligase domain VCD_003337 PF08245 Mur ligase middle domain VCD_003338 PF17848 Acetyl-coA carboxylase zinc finger domain VCD_003338 PF01039 Carboxyl transferase domain VCD_003339 PF01416 tRNA pseudouridine synthase VCD_003341 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCD_003341 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VCD_003343 PF02378 Phosphotransferase system, EIIC VCD_003343 PF00367 phosphotransferase system, EIIB VCD_003343 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCD_003344 PF01979 Amidohydrolase family VCD_003345 PF01047 MarR family VCD_003345 PF00480 ROK family VCD_003346 PF00999 Sodium/hydrogen exchanger family VCD_003346 PF02254 TrkA-N domain VCD_003347 PF00733 Asparagine synthase VCD_003347 PF13537 Glutamine amidotransferase domain VCD_003348 PF02357 Transcription termination factor nusG VCD_003349 PF00854 POT family VCD_003351 PF00762 Ferrochelatase VCD_003352 PF05191 Adenylate kinase, active site lid VCD_003353 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003353 PF00183 Hsp90 protein VCD_003354 PF00486 Transcriptional regulatory protein, C terminal VCD_003355 PF17323 Trans-membrane regulatory protein ToxS VCD_003357 PF12850 Calcineurin-like phosphoesterase superfamily domain VCD_003358 PF08338 Domain of unknown function (DUF1731) VCD_003358 PF01370 NAD dependent epimerase/dehydratase family VCD_003359 PF00106 short chain dehydrogenase VCD_003361 PF00085 Thioredoxin VCD_003362 PF01145 SPFH domain / Band 7 family VCD_003362 PF16200 C-terminal region of band_7 VCD_003363 PF01957 NfeD-like C-terminal, partner-binding VCD_003364 PF13411 MerR HTH family regulatory protein VCD_003366 PF13609 Gram-negative porin VCD_003367 PF12826 Helix-hairpin-helix motif VCD_003367 PF00533 BRCA1 C Terminus (BRCT) domain VCD_003367 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VCD_003367 PF03120 NAD-dependent DNA ligase OB-fold domain VCD_003367 PF01653 NAD-dependent DNA ligase adenylation domain VCD_003368 PF04354 ZipA, C-terminal FtsZ-binding domain VCD_003370 PF00291 Pyridoxal-phosphate dependent enzyme VCD_003371 PF00381 PTS HPr component phosphorylation site VCD_003372 PF05524 PEP-utilising enzyme, N-terminal VCD_003372 PF02896 PEP-utilising enzyme, TIM barrel domain VCD_003372 PF00391 PEP-utilising enzyme, mobile domain VCD_003373 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCD_003374 PF01494 FAD binding domain VCD_003375 PF00919 Uncharacterized protein family UPF0004 VCD_003375 PF01938 TRAM domain VCD_003375 PF04055 Radical SAM superfamily VCD_003376 PF02562 PhoH-like protein VCD_003377 PF02130 Uncharacterized protein family UPF0054 VCD_003378 PF00571 CBS domain VCD_003378 PF03471 Transporter associated domain VCD_003379 PF00795 Carbon-nitrogen hydrolase VCD_003380 PF07295 Zinc-ribbon containing domain VCD_003381 PF13603 Leucyl-tRNA synthetase, Domain 2 VCD_003381 PF00133 tRNA synthetases class I (I, L, M and V) VCD_003381 PF08264 Anticodon-binding domain of tRNA VCD_003382 PF04390 Lipopolysaccharide-assembly VCD_003383 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VCD_003383 PF06144 DNA polymerase III, delta subunit VCD_003385 PF02590 Predicted SPOUT methyltransferase VCD_003386 PF00905 Penicillin binding protein transpeptidase domain VCD_003386 PF03717 Penicillin-binding Protein dimerisation domain VCD_003387 PF01098 Cell cycle protein VCD_003388 PF05036 Sporulation related domain VCD_003388 PF03330 Lytic transglycolase VCD_003389 PF07943 Penicillin-binding protein 5, C-terminal domain VCD_003389 PF00768 D-alanyl-D-alanine carboxypeptidase VCD_003390 PF04359 Protein of unknown function (DUF493) VCD_003391 PF03099 Biotin/lipoate A/B protein ligase family VCD_003392 PF04055 Radical SAM superfamily VCD_003392 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VCD_003394 PF00464 Serine hydroxymethyltransferase VCD_003398 PF02706 Chain length determinant protein VCD_003398 PF13807 G-rich domain on putative tyrosine kinase VCD_003398 PF13614 AAA domain VCD_003399 PF02563 Polysaccharide biosynthesis/export protein VCD_003399 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VCD_003399 PF10531 SLBB domain VCD_003401 PF02397 Bacterial sugar transferase VCD_003404 PF17945 Beta/Gamma crystallin VCD_003404 PF12561 ToxR activated gene A lipoprotein domain VCD_003407 PF03808 Glycosyl transferase WecB/TagA/CpsF family VCD_003409 PF00534 Glycosyl transferases group 1 VCD_003409 PF00862 Sucrose synthase VCD_003411 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_003415 PF14602 Hexapeptide repeat of succinyl-transferase VCD_003415 PF12464 Maltose acetyltransferase VCD_003416 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VCD_003416 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VCD_003416 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VCD_003417 PF02350 UDP-N-acetylglucosamine 2-epimerase VCD_003418 PF01451 Low molecular weight phosphotyrosine protein phosphatase VCD_003419 PF00873 AcrB/AcrD/AcrF family VCD_003420 PF13533 Biotin-lipoyl like VCD_003421 PF00128 Alpha amylase, catalytic domain VCD_003421 PF16657 Maltogenic Amylase, C-terminal domain VCD_003422 PF00367 phosphotransferase system, EIIB VCD_003422 PF02378 Phosphotransferase system, EIIC VCD_003423 PF00356 Bacterial regulatory proteins, lacI family VCD_003425 PF09383 NIL domain VCD_003425 PF00005 ABC transporter VCD_003426 PF00528 Binding-protein-dependent transport system inner membrane component VCD_003427 PF03180 NLPA lipoprotein VCD_003428 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VCD_003429 PF07348 Syd protein (SUKH-2) VCD_003430 PF14489 QueF-like protein VCD_003430 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VCD_003432 PF00990 Diguanylate cyclase, GGDEF domain VCD_003433 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VCD_003433 PF11892 Domain of unknown function (DUF3412) VCD_003433 PF03641 Possible lysine decarboxylase VCD_003434 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCD_003434 PF01367 5'-3' exonuclease, C-terminal SAM fold VCD_003435 PF04241 Protein of unknown function (DUF423) VCD_003436 PF03466 LysR substrate binding domain VCD_003436 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_003437 PF02926 THUMP domain VCD_003437 PF02568 Thiamine biosynthesis protein (ThiI) VCD_003439 PF13677 Membrane MotB of proton-channel complex MotA/MotB VCD_003439 PF00691 OmpA family VCD_003440 PF01618 MotA/TolQ/ExbB proton channel family VCD_003441 PF02609 Exonuclease VII small subunit VCD_003442 PF00348 Polyprenyl synthetase VCD_003443 PF02780 Transketolase, C-terminal domain VCD_003443 PF02779 Transketolase, pyrimidine binding domain VCD_003443 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VCD_003444 PF00849 RNA pseudouridylate synthase VCD_003445 PF04287 tRNA pseudouridine synthase C VCD_003448 PF13302 Acetyltransferase (GNAT) domain VCD_003450 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VCD_003451 PF03806 AbgT putative transporter family VCD_003452 PF00444 Ribosomal protein L36 VCD_003453 PF01197 Ribosomal protein L31 VCD_003454 PF01980 tRNA-methyltransferase O VCD_003454 PF18389 TrmO C-terminal domain VCD_003455 PF04073 Aminoacyl-tRNA editing domain VCD_003455 PF03129 Anticodon binding domain VCD_003455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCD_003457 PF06786 Uncharacterised protein family (UPF0253) VCD_003459 PF01797 Transposase IS200 like VCD_003460 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VCD_003460 PF02769 AIR synthase related protein, C-terminal domain VCD_003460 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VCD_003462 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_003462 PF01464 Transglycosylase SLT domain VCD_003463 PF14437 MafB19-like deaminase VCD_003464 PF03806 AbgT putative transporter family VCD_003470 PF00114 Pilin (bacterial filament) VCD_003470 PF07963 Prokaryotic N-terminal methylation motif VCD_003471 PF00684 DnaJ central domain VCD_003471 PF01556 DnaJ C terminal domain VCD_003471 PF00226 DnaJ domain VCD_003472 PF00012 Hsp70 protein VCD_003474 PF01025 GrpE VCD_003475 PF01513 ATP-NAD kinase VCD_003476 PF02463 RecF/RecN/SMC N terminal domain VCD_003477 PF04355 SmpA / OmlA family VCD_003478 PF03658 RnfH family Ubiquitin VCD_003479 PF03364 Polyketide cyclase / dehydrase and lipid transport VCD_003480 PF01668 SmpB protein VCD_003484 PF13322 Domain of unknown function (DUF4092) VCD_003484 PF13402 Peptidase M60, enhancin and enhancin-like VCD_003484 PF17291 N-terminal domain of M60-like peptidases VCD_003486 PF01551 Peptidase family M23 VCD_003486 PF04225 Opacity-associated protein A LysM-like domain VCD_003488 PF00672 HAMP domain VCD_003488 PF02743 Cache domain VCD_003488 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_003489 PF06750 Bacterial Peptidase A24 N-terminal domain VCD_003489 PF01478 Type IV leader peptidase family VCD_003490 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family VCD_003491 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F VCD_003492 PF00482 Type II secretion system (T2SS), protein F VCD_003493 PF00437 Type II/IV secretion system protein VCD_003494 PF17456 Toxin-coregulated pilus protein S VCD_003498 PF10671 Toxin co-regulated pilus biosynthesis protein Q VCD_003500 PF07963 Prokaryotic N-terminal methylation motif VCD_003500 PF05946 Toxin-coregulated pilus subunit TcpA VCD_003502 PF00486 Transcriptional regulatory protein, C terminal VCD_003503 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_003504 PF08534 Redoxin VCD_003507 PF00041 Fibronectin type III domain VCD_003507 PF12561 ToxR activated gene A lipoprotein domain VCD_003508 PF00171 Aldehyde dehydrogenase family VCD_003521 PF11953 Domain of unknown function (DUF3470) VCD_003521 PF00037 4Fe-4S binding domain VCD_003522 PF00588 SpoU rRNA Methylase family VCD_003522 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCD_003524 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VCD_003525 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VCD_003526 PF04223 Citrate lyase, alpha subunit (CitF) VCD_003527 PF03328 HpcH/HpaI aldolase/citrate lyase family VCD_003528 PF06857 Malonate decarboxylase delta subunit (MdcD) VCD_003529 PF08218 Citrate lyase ligase C-terminal domain VCD_003530 PF03390 2-hydroxycarboxylate transporter family VCD_003531 PF04277 Oxaloacetate decarboxylase, gamma chain VCD_003532 PF02436 Conserved carboxylase domain VCD_003532 PF00682 HMGL-like VCD_003532 PF00364 Biotin-requiring enzyme VCD_003533 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCD_003534 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003534 PF17203 Single cache domain 3 VCD_003536 PF12431 Transcriptional regulator VCD_003536 PF00072 Response regulator receiver domain VCD_003539 PF03466 LysR substrate binding domain VCD_003539 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_003540 PF01266 FAD dependent oxidoreductase VCD_003542 PF01235 Sodium:alanine symporter family VCD_003543 PF14864 Alkyl sulfatase C-terminal VCD_003543 PF00753 Metallo-beta-lactamase superfamily VCD_003543 PF14863 Alkyl sulfatase dimerisation VCD_003544 PF03466 LysR substrate binding domain VCD_003544 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_003545 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VCD_003545 PF01648 4'-phosphopantetheinyl transferase superfamily VCD_003546 PF00005 ABC transporter VCD_003548 PF01032 FecCD transport family VCD_003549 PF01032 FecCD transport family VCD_003550 PF01497 Periplasmic binding protein VCD_003553 PF00425 chorismate binding enzyme VCD_003554 PF00501 AMP-binding enzyme VCD_003554 PF13193 AMP-binding enzyme C-terminal domain VCD_003555 PF00857 Isochorismatase family VCD_003555 PF00550 Phosphopantetheine attachment site VCD_003556 PF01184 GPR1/FUN34/yaaH family VCD_003557 PF06483 Chitinase C VCD_003557 PF00704 Glycosyl hydrolases family 18 VCD_003558 PF00958 GMP synthase C terminal domain VCD_003558 PF00117 Glutamine amidotransferase class-I VCD_003558 PF02540 NAD synthase VCD_003559 PF00478 IMP dehydrogenase / GMP reductase domain VCD_003559 PF00571 CBS domain VCD_003560 PF02601 Exonuclease VII, large subunit VCD_003560 PF13742 OB-fold nucleic acid binding domain VCD_003563 PF01926 50S ribosome-binding GTPase VCD_003563 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VCD_003564 PF13360 PQQ-like domain VCD_003565 PF09976 Tetratricopeptide repeat-like domain VCD_003566 PF03129 Anticodon binding domain VCD_003566 PF13393 Histidyl-tRNA synthetase VCD_003567 PF04551 GcpE protein VCD_003568 PF13464 Domain of unknown function (DUF4115) VCD_003569 PF04055 Radical SAM superfamily VCD_003570 PF00334 Nucleoside diphosphate kinase VCD_003571 PF12404 Peptidase VCD_003571 PF00883 Cytosol aminopeptidase family, catalytic domain VCD_003572 PF04384 Iron-sulphur cluster assembly VCD_003573 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_003574 PF00012 Hsp70 protein VCD_003575 PF00226 DnaJ domain VCD_003575 PF07743 HSCB C-terminal oligomerisation domain VCD_003576 PF01521 Iron-sulphur cluster biosynthesis VCD_003577 PF01592 NifU-like N terminal domain VCD_003578 PF00266 Aminotransferase class-V VCD_003579 PF02082 Transcriptional regulator VCD_003580 PF00588 SpoU rRNA Methylase family VCD_003581 PF00459 Inositol monophosphatase family VCD_003582 PF07549 SecD/SecF GG Motif VCD_003582 PF02355 Protein export membrane protein VCD_003583 PF13721 SecD export protein N-terminal TM region VCD_003583 PF02355 Protein export membrane protein VCD_003583 PF07549 SecD/SecF GG Motif VCD_003584 PF02699 Preprotein translocase subunit VCD_003585 PF01702 Queuine tRNA-ribosyltransferase VCD_003586 PF02547 Queuosine biosynthesis protein VCD_003588 PF00571 CBS domain VCD_003589 PF00463 Isocitrate lyase family VCD_003591 PF01274 Malate synthase VCD_003592 PF03466 LysR substrate binding domain VCD_003592 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_003593 PF00578 AhpC/TSA family VCD_003593 PF10417 C-terminal domain of 1-Cys peroxiredoxin VCD_003594 PF03932 CutC family VCD_003596 PF03976 Polyphosphate kinase 2 (PPK2) VCD_003597 PF01895 PhoU domain VCD_003598 PF00005 ABC transporter VCD_003599 PF00528 Binding-protein-dependent transport system inner membrane component VCD_003600 PF00528 Binding-protein-dependent transport system inner membrane component VCD_003601 PF02503 Polyphosphate kinase middle domain VCD_003601 PF13089 Polyphosphate kinase N-terminal domain VCD_003601 PF13090 Polyphosphate kinase C-terminal domain 2 VCD_003601 PF17941 Polyphosphate kinase C-terminal domain 1 VCD_003602 PF02541 Ppx/GppA phosphatase family VCD_003603 PF12849 PBP superfamily domain VCD_003604 PF11808 Phosphate regulon sensor protein PhoR VCD_003604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003604 PF00989 PAS fold VCD_003604 PF00512 His Kinase A (phospho-acceptor) domain VCD_003605 PF00486 Transcriptional regulatory protein, C terminal VCD_003605 PF00072 Response regulator receiver domain VCD_003606 PF04381 Putative exonuclease, RdgC VCD_003608 PF00037 4Fe-4S binding domain VCD_003609 PF00881 Nitroreductase family VCD_003611 PF07724 AAA domain (Cdc48 subfamily) VCD_003611 PF17871 AAA lid domain VCD_003611 PF00004 ATPase family associated with various cellular activities (AAA) VCD_003611 PF02861 Clp amino terminal domain, pathogenicity island component VCD_003611 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_003613 PF01479 S4 domain VCD_003613 PF00849 RNA pseudouridylate synthase VCD_003614 PF13525 Outer membrane lipoprotein VCD_003616 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCD_003617 PF00800 Prephenate dehydratase VCD_003617 PF01817 Chorismate mutase type II VCD_003618 PF13416 Bacterial extracellular solute-binding protein VCD_003619 PF00563 EAL domain VCD_003619 PF00990 Diguanylate cyclase, GGDEF domain VCD_003620 PF01931 Protein of unknown function DUF84 VCD_003621 PF01371 Trp repressor protein VCD_003622 PF14718 Soluble lytic murein transglycosylase L domain VCD_003622 PF01464 Transglycosylase SLT domain VCD_003623 PF12848 ABC transporter VCD_003623 PF00005 ABC transporter VCD_003624 PF07238 PilZ domain VCD_003625 PF02153 Prephenate dehydrogenase VCD_003625 PF01817 Chorismate mutase type II VCD_003626 PF00793 DAHP synthetase I family VCD_003627 PF07694 5TMR of 5TMR-LYT VCD_003627 PF06580 Histidine kinase VCD_003628 PF04397 LytTr DNA-binding domain VCD_003628 PF00072 Response regulator receiver domain VCD_003629 PF00933 Glycosyl hydrolase family 3 N terminal domain VCD_003630 PF03702 Anhydro-N-acetylmuramic acid kinase VCD_003631 PF13580 SIS domain VCD_003634 PF02554 Carbon starvation protein CstA VCD_003635 PF02401 LytB protein VCD_003636 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_003637 PF01252 Signal peptidase (SPase) II VCD_003638 PF06827 Zinc finger found in FPG and IleRS VCD_003638 PF00133 tRNA synthetases class I (I, L, M and V) VCD_003638 PF08264 Anticodon-binding domain of tRNA VCD_003639 PF06574 FAD synthetase VCD_003639 PF01687 Riboflavin kinase VCD_003640 PF03023 Lipid II flippase MurJ VCD_003641 PF01649 Ribosomal protein S20 VCD_003642 PF01022 Bacterial regulatory protein, arsR family VCD_003643 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_003643 PF03466 LysR substrate binding domain VCD_003645 PF02690 Na+/Pi-cotransporter VCD_003646 PF00303 Thymidylate synthase VCD_003647 PF01790 Prolipoprotein diacylglyceryl transferase VCD_003648 PF01925 Sulfite exporter TauE/SafE VCD_003649 PF05524 PEP-utilising enzyme, N-terminal VCD_003649 PF02896 PEP-utilising enzyme, TIM barrel domain VCD_003649 PF00391 PEP-utilising enzyme, mobile domain VCD_003649 PF01590 GAF domain VCD_003650 PF00293 NUDIX domain VCD_003651 PF02976 DNA mismatch repair enzyme MutH VCD_003652 PF00248 Aldo/keto reductase family VCD_003654 PF02954 Bacterial regulatory protein, Fis family VCD_003654 PF00072 Response regulator receiver domain VCD_003654 PF00158 Sigma-54 interaction domain VCD_003655 PF01336 OB-fold nucleic acid binding domain VCD_003655 PF00152 tRNA synthetases class II (D, K and N) VCD_003656 PF00472 RF-1 domain VCD_003656 PF03462 PCRF domain VCD_003657 PF05525 Branched-chain amino acid transport protein VCD_003658 PF05175 Methyltransferase small domain VCD_003659 PF00271 Helicase conserved C-terminal domain VCD_003659 PF00270 DEAD/DEAH box helicase VCD_003660 PF16658 Class II release factor RF3, C-terminal domain VCD_003660 PF00009 Elongation factor Tu GTP binding domain VCD_003660 PF03144 Elongation factor Tu domain 2 VCD_003661 PF00717 Peptidase S24-like VCD_003661 PF01381 Helix-turn-helix VCD_003668 PF06122 Conjugative relaxosome accessory transposon protein VCD_003670 PF13495 Phage integrase, N-terminal SAM-like domain VCD_003670 PF00589 Phage integrase family VCD_003671 PF00186 Dihydrofolate reductase VCD_003673 PF12833 Helix-turn-helix domain VCD_003677 PF04002 RadC-like JAB domain VCD_003678 PF00092 von Willebrand factor type A domain VCD_003682 PF07728 AAA domain (dynein-related subfamily) VCD_003682 PF08406 CbbQ/NirQ/NorQ C-terminal VCD_003686 PF00436 Single-strand binding protein family VCD_003691 PF06986 Type-1V conjugative transfer system mating pair stabilisation VCD_003692 PF06834 TraU protein VCD_003694 PF10502 Signal peptidase, peptidase S26 VCD_003697 PF10411 Disulfide bond isomerase protein N-terminus VCD_003697 PF13098 Thioredoxin-like domain VCD_003698 PF00158 Sigma-54 interaction domain VCD_003698 PF02954 Bacterial regulatory protein, Fis family VCD_003698 PF00072 Response regulator receiver domain VCD_003725 PF14579 Helix-hairpin-helix motif VCD_003725 PF11490 DNA polymerase III polC-type N-terminus II VCD_003725 PF07733 Bacterial DNA polymerase III alpha NTPase domain VCD_003725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VCD_003725 PF02811 PHP domain VCD_003725 PF00929 Exonuclease VCD_003726 PF00717 Peptidase S24-like VCD_003727 PF13438 Domain of unknown function (DUF4113) VCD_003727 PF00817 impB/mucB/samB family VCD_003727 PF11799 impB/mucB/samB family C-terminal domain VCD_003730 PF00809 Pterin binding enzyme VCD_003731 PF01636 Phosphotransferase enzyme family VCD_003732 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase VCD_003734 PF01545 Cation efflux family VCD_003736 PF01636 Phosphotransferase enzyme family VCD_003737 PF00440 Bacterial regulatory proteins, tetR family VCD_003737 PF02909 Tetracyclin repressor-like, C-terminal domain VCD_003738 PF07690 Major Facilitator Superfamily VCD_003739 PF03466 LysR substrate binding domain VCD_003739 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_003740 PF07690 Major Facilitator Superfamily VCD_003745 PF11799 impB/mucB/samB family C-terminal domain VCD_003745 PF13438 Domain of unknown function (DUF4113) VCD_003745 PF00817 impB/mucB/samB family VCD_003752 PF16658 Class II release factor RF3, C-terminal domain VCD_003752 PF03144 Elongation factor Tu domain 2 VCD_003752 PF00009 Elongation factor Tu GTP binding domain VCD_003753 PF03707 Bacterial signalling protein N terminal repeat VCD_003753 PF00990 Diguanylate cyclase, GGDEF domain VCD_003753 PF00563 EAL domain VCD_003756 PF13508 Acetyltransferase (GNAT) domain VCD_003758 PF00990 Diguanylate cyclase, GGDEF domain VCD_003758 PF00563 EAL domain VCD_003758 PF03707 Bacterial signalling protein N terminal repeat VCD_003763 PF07719 Tetratricopeptide repeat VCD_003763 PF13181 Tetratricopeptide repeat VCD_003764 PF01138 3' exoribonuclease family, domain 1 VCD_003764 PF00013 KH domain VCD_003764 PF00575 S1 RNA binding domain VCD_003764 PF03725 3' exoribonuclease family, domain 2 VCD_003764 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VCD_003765 PF00312 Ribosomal protein S15 VCD_003766 PF16198 tRNA pseudouridylate synthase B C-terminal domain VCD_003766 PF09157 Pseudouridine synthase II TruB, C-terminal VCD_003766 PF01509 TruB family pseudouridylate synthase (N terminal domain) VCD_003767 PF02033 Ribosome-binding factor A VCD_003768 PF00009 Elongation factor Tu GTP binding domain VCD_003768 PF11987 Translation-initiation factor 2 VCD_003768 PF08364 Bacterial translation initiation factor IF-2 associated region VCD_003768 PF04760 Translation initiation factor IF-2, N-terminal region VCD_003769 PF00575 S1 RNA binding domain VCD_003769 PF08529 NusA N-terminal domain VCD_003769 PF13184 NusA-like KH domain VCD_003770 PF17384 RimP C-terminal SH3 domain VCD_003770 PF02576 RimP N-terminal domain VCD_003771 PF03840 Preprotein translocase SecG subunit VCD_003772 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_003772 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_003772 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_003772 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_003773 PF00809 Pterin binding enzyme VCD_003774 PF06480 FtsH Extracellular VCD_003774 PF01434 Peptidase family M41 VCD_003774 PF00004 ATPase family associated with various cellular activities (AAA) VCD_003774 PF17862 AAA+ lid domain VCD_003775 PF01728 FtsJ-like methyltransferase VCD_003776 PF01985 CRS1 / YhbY (CRM) domain VCD_003777 PF03449 Transcription elongation factor, N-terminal VCD_003777 PF01272 Transcription elongation factor, GreA/GreB, C-term VCD_003778 PF13609 Gram-negative porin VCD_003779 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VCD_003780 PF00579 tRNA synthetases class I (W and Y) VCD_003780 PF01479 S4 domain VCD_003781 PF04225 Opacity-associated protein A LysM-like domain VCD_003781 PF01551 Peptidase family M23 VCD_003782 PF00873 AcrB/AcrD/AcrF family VCD_003784 PF01521 Iron-sulphur cluster biosynthesis VCD_003785 PF00202 Aminotransferase class-III VCD_003786 PF01594 AI-2E family transporter VCD_003787 PF08468 Methyltransferase small domain N-terminal VCD_003787 PF05175 Methyltransferase small domain VCD_003788 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_003788 PF00512 His Kinase A (phospho-acceptor) domain VCD_003788 PF09308 LuxQ, periplasmic VCD_003788 PF00072 Response regulator receiver domain VCD_003789 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_003790 PF00528 Binding-protein-dependent transport system inner membrane component VCD_003791 PF00528 Binding-protein-dependent transport system inner membrane component VCD_003791 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_003792 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_003792 PF00005 ABC transporter VCD_003793 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_003793 PF00005 ABC transporter VCD_003795 PF01869 BadF/BadG/BcrA/BcrD ATPase family VCD_003796 PF00728 Glycosyl hydrolase family 20, catalytic domain VCD_003796 PF02838 Glycosyl hydrolase family 20, domain 2 VCD_003797 PF06165 Glycosyltransferase family 36 VCD_003797 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VCD_003798 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_003798 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_003798 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_003798 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_003799 PF08402 TOBE domain VCD_003799 PF00005 ABC transporter VCD_003801 PF13416 Bacterial extracellular solute-binding protein VCD_003802 PF00909 Ammonium Transporter Family VCD_003803 PF00543 Nitrogen regulatory protein P-II VCD_003804 PF06062 Uncharacterised protein family (UPF0231) VCD_003805 PF06434 Aconitate hydratase 2 N-terminus VCD_003805 PF11791 Aconitate B N-terminal domain VCD_003805 PF00330 Aconitase family (aconitate hydratase) VCD_003806 PF01734 Patatin-like phospholipase VCD_003807 PF14814 Bifunctional transglycosylase second domain VCD_003807 PF00905 Penicillin binding protein transpeptidase domain VCD_003807 PF00912 Transglycosylase VCD_003808 PF08482 ATP-dependent helicase C-terminal VCD_003808 PF00271 Helicase conserved C-terminal domain VCD_003808 PF04408 Helicase associated domain (HA2) VCD_003808 PF00270 DEAD/DEAH box helicase VCD_003810 PF17746 SfsA N-terminal OB domain VCD_003810 PF03749 Sugar fermentation stimulation protein RE domain VCD_003811 PF01258 Prokaryotic dksA/traR C4-type zinc finger VCD_003812 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCD_003813 PF01743 Poly A polymerase head domain VCD_003813 PF12626 Polymerase A arginine-rich C-terminus VCD_003813 PF12627 Probable RNA and SrmB- binding site of polymerase A VCD_003814 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)