VCD_000004 SM00642 Alpha-amylase domain VCD_000007 SM00420 helix_turn_helix, Deoxyribose operon repressor VCD_000007 SM01134 VCD_000007 VCD_000010 SM01007 Class II Aldolase and Adducin N-terminal domain VCD_000012 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VCD_000016 SM00448 cheY-homologous receiver domain VCD_000016 SM00862 Transcriptional regulatory protein, C terminal VCD_000017 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000017 SM00387 Histidine kinase-like ATPases VCD_000017 SM00388 His Kinase A (phosphoacceptor) domain VCD_000023 SM00342 helix_turn_helix, arabinose operon control protein VCD_000024 SM00382 ATPases associated with a variety of cellular activities VCD_000030 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VCD_000033 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000033 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000034 SM00458 Ricin-type beta-trefoil VCD_000036 SM00267 diguanylate cyclase VCD_000042 SM00387 Histidine kinase-like ATPases VCD_000043 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_000047 SM00487 DEAD-like helicases superfamily VCD_000047 SM00490 helicase superfamily c-terminal domain VCD_000048 SM01321 VCD_000048 VCD_000053 SM01240 VCD_000053 VCD_000060 SM00448 cheY-homologous receiver domain VCD_000065 SM00357 Cold shock protein domain VCD_000067 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VCD_000067 SM00382 ATPases associated with a variety of cellular activities VCD_000074 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000074 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000078 SM00327 von Willebrand factor (vWF) type A domain VCD_000079 SM00028 Tetratricopeptide repeats VCD_000082 SM00357 Cold shock protein domain VCD_000083 SM00267 diguanylate cyclase VCD_000104 SM00382 ATPases associated with a variety of cellular activities VCD_000104 SM00448 cheY-homologous receiver domain VCD_000105 SM00091 PAS domain VCD_000105 SM00387 Histidine kinase-like ATPases VCD_000105 SM00388 His Kinase A (phosphoacceptor) domain VCD_000106 SM00495 Chitin-binding domain type 3 VCD_000110 SM00100 Cyclic nucleotide-monophosphate binding domain VCD_000114 SM00354 helix_turn _helix lactose operon repressor VCD_000118 SM00382 ATPases associated with a variety of cellular activities VCD_000127 SM00382 ATPases associated with a variety of cellular activities VCD_000128 SM00382 ATPases associated with a variety of cellular activities VCD_000128 SM01086 C-terminal, D2-small domain, of ClpB protein VCD_000143 SM00052 Putative diguanylate phosphodiesterase VCD_000144 SM00450 Rhodanese Homology Domain VCD_000157 SM00422 helix_turn_helix, mercury resistance VCD_000160 SM00052 Putative diguanylate phosphodiesterase VCD_000160 SM00267 diguanylate cyclase VCD_000166 SM00267 diguanylate cyclase VCD_000167 SM00382 ATPases associated with a variety of cellular activities VCD_000171 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000171 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000177 SM00487 DEAD-like helicases superfamily VCD_000177 SM00490 helicase superfamily c-terminal domain VCD_000180 SM00257 Lysin motif VCD_000182 SM00422 helix_turn_helix, mercury resistance VCD_000186 SM00028 Tetratricopeptide repeats VCD_000187 SM00267 diguanylate cyclase VCD_000190 SM00245 tail specific protease VCD_000199 SM00014 Acid phosphatase homologues VCD_000203 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000203 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000206 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VCD_000206 SM00495 Chitin-binding domain type 3 VCD_000206 SM00636 VCD_000206 VCD_000217 SM00642 Alpha-amylase domain VCD_000220 SM00421 helix_turn_helix, Lux Regulon VCD_000222 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000222 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000222 SM01049 VCD_000222 VCD_000230 SM00470 ParB-like nuclease domain VCD_000235 SM01236 VCD_000235 VCD_000236 SM00822 VCD_000236 VCD_000238 SM00448 cheY-homologous receiver domain VCD_000238 SM00862 Transcriptional regulatory protein, C terminal VCD_000239 SM00387 Histidine kinase-like ATPases VCD_000239 SM00388 His Kinase A (phosphoacceptor) domain VCD_000242 SM00382 ATPases associated with a variety of cellular activities VCD_000247 SM00448 cheY-homologous receiver domain VCD_000248 SM00073 Histidine Phosphotransfer domain VCD_000248 SM00260 Two component signalling adaptor domain VCD_000248 SM00387 Histidine kinase-like ATPases VCD_000248 SM01231 VCD_000248 VCD_000249 SM00260 Two component signalling adaptor domain VCD_000250 SM00260 Two component signalling adaptor domain VCD_000251 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000251 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000252 SM00138 Methyltransferase, chemotaxis proteins VCD_000254 SM00448 cheY-homologous receiver domain VCD_000255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000257 SM00331 Sigma factor PP2C-like phosphatases VCD_000257 SM00448 cheY-homologous receiver domain VCD_000259 SM00382 ATPases associated with a variety of cellular activities VCD_000260 SM00052 Putative diguanylate phosphodiesterase VCD_000260 SM00267 diguanylate cyclase VCD_000264 SM00421 helix_turn_helix, Lux Regulon VCD_000268 SM00342 helix_turn_helix, arabinose operon control protein VCD_000273 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000273 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000274 SM00344 helix_turn_helix ASNC type VCD_000284 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000284 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000287 SM00450 Rhodanese Homology Domain VCD_000291 SM00849 Metallo-beta-lactamase superfamily VCD_000301 SM00062 Bacterial periplasmic substrate-binding proteins VCD_000303 SM00382 ATPases associated with a variety of cellular activities VCD_000306 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000306 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000312 SM00642 Alpha-amylase domain VCD_000315 SM00671 Sel1-like repeats. VCD_000318 SM01154 VCD_000318 VCD_000322 SM00342 helix_turn_helix, arabinose operon control protein VCD_000322 SM01009 AlkA N-terminal domain VCD_000333 SM00347 helix_turn_helix multiple antibiotic resistance protein VCD_000337 SM00342 helix_turn_helix, arabinose operon control protein VCD_000342 SM00382 ATPases associated with a variety of cellular activities VCD_000348 SM00487 DEAD-like helicases superfamily VCD_000348 SM00490 helicase superfamily c-terminal domain VCD_000350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000360 SM00062 Bacterial periplasmic substrate-binding proteins VCD_000361 SM00382 ATPases associated with a variety of cellular activities VCD_000364 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000364 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000370 SM00267 diguanylate cyclase VCD_000375 SM00267 diguanylate cyclase VCD_000375 SM01079 VCD_000375 VCD_000376 SM00530 Helix-turn-helix XRE-family like proteins VCD_000378 SM00267 diguanylate cyclase VCD_000379 SM00347 helix_turn_helix multiple antibiotic resistance protein VCD_000380 SM00260 Two component signalling adaptor domain VCD_000380 SM00448 cheY-homologous receiver domain VCD_000383 SM00421 helix_turn_helix, Lux Regulon VCD_000385 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VCD_000388 SM00382 ATPases associated with a variety of cellular activities VCD_000394 SM00420 helix_turn_helix, Deoxyribose operon repressor VCD_000394 SM01134 VCD_000394 VCD_000395 SM00091 PAS domain VCD_000395 SM00267 diguanylate cyclase VCD_000397 SM00342 helix_turn_helix, arabinose operon control protein VCD_000400 SM00357 Cold shock protein domain VCD_000401 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_000406 SM00342 helix_turn_helix, arabinose operon control protein VCD_000409 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000409 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000416 SM00382 ATPases associated with a variety of cellular activities VCD_000422 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_000425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000431 SM00849 Metallo-beta-lactamase superfamily VCD_000433 SM01350 VCD_000433 VCD_000436 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_000437 SM00481 DNA polymerase alpha chain like domain VCD_000444 SM00421 helix_turn_helix, Lux Regulon VCD_000462 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCD_000467 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCD_000467 SM00091 PAS domain VCD_000467 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000470 SM00642 Alpha-amylase domain VCD_000474 SM00382 ATPases associated with a variety of cellular activities VCD_000478 SM00387 Histidine kinase-like ATPases VCD_000479 SM00448 cheY-homologous receiver domain VCD_000479 SM00850 LytTr DNA-binding domain VCD_000481 SM00267 diguanylate cyclase VCD_000485 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_000489 SM01091 Transporter associated domain VCD_000490 SM01266 VCD_000490 VCD_000505 SM00883 Chaperonin 10 Kd subunit VCD_000506 SM00924 MgtE intracellular N domain VCD_000518 SM00357 Cold shock protein domain VCD_000518 SM00955 VCD_000518 VCD_000519 SM00487 DEAD-like helicases superfamily VCD_000519 SM00490 helicase superfamily c-terminal domain VCD_000520 SM00020 Trypsin-like serine protease VCD_000527 SM00857 Resolvase, N terminal domain VCD_000534 SM00271 DnaJ molecular chaperone homology domain VCD_000537 SM00052 Putative diguanylate phosphodiesterase VCD_000537 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VCD_000537 SM00267 diguanylate cyclase VCD_000540 SM00382 ATPases associated with a variety of cellular activities VCD_000542 SM00984 UDP binding domain VCD_000544 SM00797 Allophanate hydrolase subunit 2 VCD_000545 SM00796 Allophanate hydrolase subunit 1 VCD_000548 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000548 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000552 SM00487 DEAD-like helicases superfamily VCD_000552 SM00490 helicase superfamily c-terminal domain VCD_000557 SM00382 ATPases associated with a variety of cellular activities VCD_000558 SM00327 von Willebrand factor (vWF) type A domain VCD_000560 SM00382 ATPases associated with a variety of cellular activities VCD_000561 SM00062 Bacterial periplasmic substrate-binding proteins VCD_000561 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VCD_000584 SM00387 Histidine kinase-like ATPases VCD_000584 SM00388 His Kinase A (phosphoacceptor) domain VCD_000584 SM00448 cheY-homologous receiver domain VCD_000595 SM00382 ATPases associated with a variety of cellular activities VCD_000599 SM00989 VCD_000599 VCD_000600 SM00387 Histidine kinase-like ATPases VCD_000608 SM00851 MGS-like domain VCD_000610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000610 SM00387 Histidine kinase-like ATPases VCD_000610 SM00388 His Kinase A (phosphoacceptor) domain VCD_000610 SM00448 cheY-homologous receiver domain VCD_000614 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000614 SM00387 Histidine kinase-like ATPases VCD_000614 SM00388 His Kinase A (phosphoacceptor) domain VCD_000615 SM00448 cheY-homologous receiver domain VCD_000618 SM00495 Chitin-binding domain type 3 VCD_000618 SM00636 VCD_000618 VCD_000620 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCD_000620 SM00267 diguanylate cyclase VCD_000628 SM00530 Helix-turn-helix XRE-family like proteins VCD_000634 SM00822 VCD_000634 VCD_000638 SM00382 ATPases associated with a variety of cellular activities VCD_000642 SM00387 Histidine kinase-like ATPases VCD_000643 SM00421 helix_turn_helix, Lux Regulon VCD_000643 SM00448 cheY-homologous receiver domain VCD_000644 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_000648 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VCD_000651 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000651 SM00387 Histidine kinase-like ATPases VCD_000652 SM00421 helix_turn_helix, Lux Regulon VCD_000652 SM00448 cheY-homologous receiver domain VCD_000653 SM00354 helix_turn _helix lactose operon repressor VCD_000660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_000664 SM00091 PAS domain VCD_000664 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_000667 SM00640 Glycosyl hydrolases family 32 VCD_000668 SM00354 helix_turn _helix lactose operon repressor VCD_000676 SM00563 Phosphate acyltransferases VCD_000678 SM00450 Rhodanese Homology Domain VCD_000680 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VCD_000697 SM00861 Transketolase, pyrimidine binding domain VCD_000701 SM00450 Rhodanese Homology Domain VCD_000704 SM00852 Probable molybdopterin binding domain VCD_000717 SM00382 ATPases associated with a variety of cellular activities VCD_000719 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCD_000719 SM00866 VCD_000719 VCD_000729 SM00382 ATPases associated with a variety of cellular activities VCD_000744 SM00881 CoA binding domain VCD_000757 SM00530 Helix-turn-helix XRE-family like proteins VCD_000762 SM00448 cheY-homologous receiver domain VCD_000762 SM00862 Transcriptional regulatory protein, C terminal VCD_000763 SM00387 Histidine kinase-like ATPases VCD_000763 SM00388 His Kinase A (phosphoacceptor) domain VCD_000765 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VCD_000765 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VCD_000768 SM00267 diguanylate cyclase VCD_000771 SM00062 Bacterial periplasmic substrate-binding proteins VCD_000771 SM00267 diguanylate cyclase VCD_000778 SM00782 PhnA Zinc-Ribbon VCD_000787 SM00116 Domain in cystathionine beta-synthase and other proteins. VCD_000788 SM00867 YceI-like domain VCD_000791 SM00052 Putative diguanylate phosphodiesterase VCD_000796 SM00448 cheY-homologous receiver domain VCD_000796 SM00862 Transcriptional regulatory protein, C terminal VCD_000797 SM00387 Histidine kinase-like ATPases VCD_000797 SM00388 His Kinase A (phosphoacceptor) domain VCD_000798 SM00890 Domain of unknown function VCD_000801 SM00833 Cobalamin synthesis protein cobW C-terminal domain VCD_000805 SM00387 Histidine kinase-like ATPases VCD_000805 SM00448 cheY-homologous receiver domain VCD_000808 SM00354 helix_turn _helix lactose operon repressor VCD_000832 SM01321 VCD_000832 VCD_000835 SM00857 Resolvase, N terminal domain VCD_000895 SM00530 Helix-turn-helix XRE-family like proteins VCD_000970 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_000971 SM00507 HNH nucleases VCD_000988 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VCD_000995 SM00530 Helix-turn-helix XRE-family like proteins VCD_000999 SM01321 VCD_000999 VCD_001000 SM01057 Eukaryotic-type carbonic anhydrase VCD_001003 SM00936 Penicillin-binding protein 5, C-terminal domain VCD_001005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_001005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_001007 SM00342 helix_turn_helix, arabinose operon control protein VCD_001009 SM00422 helix_turn_helix, mercury resistance VCD_001015 SM00387 Histidine kinase-like ATPases VCD_001015 SM00388 His Kinase A (phosphoacceptor) domain VCD_001016 SM00448 cheY-homologous receiver domain VCD_001016 SM00862 Transcriptional regulatory protein, C terminal VCD_001021 SM00382 ATPases associated with a variety of cellular activities VCD_001023 SM00947 Carbonic anhydrase VCD_001030 SM00749 bacterial OsmY and nodulation domain VCD_001040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VCD_001041 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VCD_001046 SM00382 ATPases associated with a variety of cellular activities VCD_001046 SM00962 SRP54-type protein, GTPase domain VCD_001046 SM00963 SRP54-type protein, helical bundle domain VCD_001048 SM01091 Transporter associated domain VCD_001053 SM00829 Enoylreductase VCD_001060 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VCD_001062 SM00382 ATPases associated with a variety of cellular activities VCD_001064 SM00382 ATPases associated with a variety of cellular activities VCD_001070 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VCD_001070 SM00534 ATPase domain of DNA mismatch repair MUTS family VCD_001072 SM00257 Lysin motif VCD_001081 SM00905 Dihydroneopterin aldolase VCD_001082 SM01207 VCD_001082 VCD_001087 SM00400 zinc finger VCD_001087 SM00493 VCD_001087 VCD_001087 SM00766 DNA primase DnaG DnaB-binding VCD_001091 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_001091 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_001092 SM00342 helix_turn_helix, arabinose operon control protein VCD_001093 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_001116 SM00563 Phosphate acyltransferases VCD_001120 SM00420 helix_turn_helix, Deoxyribose operon repressor VCD_001120 SM01134 VCD_001120 VCD_001129 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_001133 SM00861 Transketolase, pyrimidine binding domain VCD_001135 SM00731 SprT homologues. VCD_001140 SM00732 Likely ribonuclease with RNase H fold. VCD_001141 SM00363 S4 RNA-binding domain VCD_001142 SM00421 helix_turn_helix, Lux Regulon VCD_001145 SM00382 ATPases associated with a variety of cellular activities VCD_001149 SM01152 VCD_001149 VCD_001152 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_001155 SM00478 endonuclease III VCD_001155 SM00525 VCD_001155 VCD_001158 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_001158 SM01049 VCD_001158 VCD_001159 SM00271 DnaJ molecular chaperone homology domain VCD_001163 SM00650 Ribosomal RNA adenine dimethylases VCD_001187 SM00530 Helix-turn-helix XRE-family like proteins VCD_001190 SM00487 DEAD-like helicases superfamily VCD_001203 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_001218 SM00382 ATPases associated with a variety of cellular activities VCD_001219 SM00028 Tetratricopeptide repeats VCD_001221 SM00965 Secretin and TonB N terminus short domain VCD_001225 SM00052 Putative diguanylate phosphodiesterase VCD_001225 SM00267 diguanylate cyclase VCD_001227 SM00421 helix_turn_helix, Lux Regulon VCD_001233 SM01018 B12 binding domain VCD_001252 SM01005 Alanine racemase, C-terminal domain VCD_001253 SM00382 ATPases associated with a variety of cellular activities VCD_001262 SM00838 Elongation factor G C-terminus VCD_001262 SM00889 Elongation factor G, domain IV VCD_001270 SM00320 WD40 repeats VCD_001273 SM00244 prohibitin homologues VCD_001274 SM00244 prohibitin homologues VCD_001278 SM00853 MutL C terminal dimerisation domain VCD_001278 SM01340 VCD_001278 VCD_001279 SM00257 Lysin motif VCD_001279 SM00646 VCD_001279 VCD_001282 SM00479 VCD_001282 VCD_001295 SM00663 RNA polymerase I subunit A N-terminus VCD_001300 SM00649 Ribosomal protein L11/L12 VCD_001301 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VCD_001301 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VCD_001308 SM00155 Phospholipase D. Active site motifs. VCD_001314 SM00357 Cold shock protein domain VCD_001314 SM00382 ATPases associated with a variety of cellular activities VCD_001314 SM00959 Rho termination factor, N-terminal domain VCD_001316 SM00487 DEAD-like helicases superfamily VCD_001316 SM00490 helicase superfamily c-terminal domain VCD_001318 SM00387 Histidine kinase-like ATPases VCD_001318 SM00388 His Kinase A (phosphoacceptor) domain VCD_001318 SM00448 cheY-homologous receiver domain VCD_001321 SM00479 VCD_001321 VCD_001325 SM00878 Biotin carboxylase C-terminal domain VCD_001331 SM00354 helix_turn _helix lactose operon repressor VCD_001339 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_001339 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_001339 SM01049 VCD_001339 VCD_001342 SM00862 Transcriptional regulatory protein, C terminal VCD_001343 SM00422 helix_turn_helix, mercury resistance VCD_001345 SM00798 AICARFT/IMPCHase bienzyme VCD_001345 SM00851 MGS-like domain VCD_001346 SM01209 VCD_001346 VCD_001346 SM01210 VCD_001346 VCD_001348 SM00411 bacterial (prokaryotic) histone like domain VCD_001355 SM00986 Uracil DNA glycosylase superfamily VCD_001355 SM00987 UreE urease accessory protein, C-terminal domain VCD_001357 SM00849 Metallo-beta-lactamase superfamily VCD_001357 SM01027 Beta-Casp domain VCD_001370 SM00382 ATPases associated with a variety of cellular activities VCD_001395 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VCD_001395 SM01232 VCD_001395 VCD_001400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_001400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_001400 SM01049 VCD_001400 VCD_001414 SM00382 ATPases associated with a variety of cellular activities VCD_001416 SM00382 ATPases associated with a variety of cellular activities VCD_001419 SM00341 Helicase and RNase D C-terminal VCD_001419 SM00487 DEAD-like helicases superfamily VCD_001419 SM00490 helicase superfamily c-terminal domain VCD_001419 SM00956 VCD_001419 VCD_001422 SM00342 helix_turn_helix, arabinose operon control protein VCD_001434 SM00530 Helix-turn-helix XRE-family like proteins VCD_001440 SM00382 ATPases associated with a variety of cellular activities VCD_001460 SM00382 ATPases associated with a variety of cellular activities VCD_001468 SM00470 ParB-like nuclease domain VCD_001471 SM01228 VCD_001471 VCD_001477 SM00382 ATPases associated with a variety of cellular activities VCD_001479 SM00062 Bacterial periplasmic substrate-binding proteins VCD_001480 SM00382 ATPases associated with a variety of cellular activities VCD_001480 SM00760 Bacterial dnaA protein helix-turn-helix domain VCD_001481 SM00480 DNA polymerase III beta subunit VCD_001483 SM00387 Histidine kinase-like ATPases VCD_001483 SM00433 TopoisomeraseII VCD_001494 SM00829 Enoylreductase VCD_001500 SM00382 ATPases associated with a variety of cellular activities VCD_001501 SM00563 Phosphate acyltransferases VCD_001516 SM00257 Lysin motif VCD_001521 SM01001 AIR carboxylase VCD_001534 SM00876 Biotin and Thiamin Synthesis associated domain VCD_001539 SM00344 helix_turn_helix ASNC type VCD_001540 SM00052 Putative diguanylate phosphodiesterase VCD_001540 SM00091 PAS domain VCD_001540 SM00267 diguanylate cyclase VCD_001560 SM00563 Phosphate acyltransferases VCD_001564 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCD_001564 SM00091 PAS domain VCD_001564 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_001566 SM00450 Rhodanese Homology Domain VCD_001568 SM01004 Delta-aminolevulinic acid dehydratase VCD_001570 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VCD_001570 SM00474 3'-5' exonuclease VCD_001570 SM00475 5'-3' exonuclease VCD_001570 SM00482 DNA polymerase A domain VCD_001576 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_001583 SM01219 VCD_001583 VCD_001590 SM00052 Putative diguanylate phosphodiesterase VCD_001590 SM00267 diguanylate cyclase VCD_001590 SM00897 FIST N domain VCD_001590 SM01204 VCD_001590 VCD_001591 SM01144 VCD_001591 VCD_001604 SM00382 ATPases associated with a variety of cellular activities VCD_001604 SM00962 SRP54-type protein, GTPase domain VCD_001604 SM00963 SRP54-type protein, helical bundle domain VCD_001605 SM00382 ATPases associated with a variety of cellular activities VCD_001615 SM00360 RNA recognition motif VCD_001618 SM00052 Putative diguanylate phosphodiesterase VCD_001618 SM00267 diguanylate cyclase VCD_001619 SM00382 ATPases associated with a variety of cellular activities VCD_001619 SM00448 cheY-homologous receiver domain VCD_001620 SM00091 PAS domain VCD_001620 SM00387 Histidine kinase-like ATPases VCD_001620 SM00388 His Kinase A (phosphoacceptor) domain VCD_001622 SM01230 VCD_001622 VCD_001632 SM00363 S4 RNA-binding domain VCD_001635 SM00382 ATPases associated with a variety of cellular activities VCD_001651 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_001651 SM00732 Likely ribonuclease with RNase H fold. VCD_001653 SM00448 cheY-homologous receiver domain VCD_001653 SM00862 Transcriptional regulatory protein, C terminal VCD_001654 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_001654 SM00387 Histidine kinase-like ATPases VCD_001654 SM00388 His Kinase A (phosphoacceptor) domain VCD_001656 SM00487 DEAD-like helicases superfamily VCD_001656 SM00490 helicase superfamily c-terminal domain VCD_001657 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_001657 SM00954 Region found in RelA / SpoT proteins VCD_001658 SM01409 VCD_001658 VCD_001659 SM00072 Guanylate kinase homologues. VCD_001663 SM01091 Transporter associated domain VCD_001664 SM00421 helix_turn_helix, Lux Regulon VCD_001664 SM00448 cheY-homologous receiver domain VCD_001671 SM00267 diguanylate cyclase VCD_001675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_001675 SM00387 Histidine kinase-like ATPases VCD_001675 SM00388 His Kinase A (phosphoacceptor) domain VCD_001676 SM00448 cheY-homologous receiver domain VCD_001676 SM00862 Transcriptional regulatory protein, C terminal VCD_001687 SM00919 Malic enzyme, NAD binding domain VCD_001687 SM01274 VCD_001687 VCD_001689 SM00487 DEAD-like helicases superfamily VCD_001689 SM00490 helicase superfamily c-terminal domain VCD_001690 SM00354 helix_turn _helix lactose operon repressor VCD_001693 SM00382 ATPases associated with a variety of cellular activities VCD_001693 SM01086 C-terminal, D2-small domain, of ClpB protein VCD_001702 SM00883 Chaperonin 10 Kd subunit VCD_001706 SM00841 Elongation factor P, C-terminal VCD_001706 SM01185 VCD_001706 VCD_001712 SM00450 Rhodanese Homology Domain VCD_001715 SM00971 Serine acetyltransferase, N-terminal VCD_001719 SM00859 Semialdehyde dehydrogenase, NAD binding domain VCD_001733 SM00965 Secretin and TonB N terminus short domain VCD_001743 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_001748 SM01150 VCD_001748 VCD_001749 SM00100 Cyclic nucleotide-monophosphate binding domain VCD_001749 SM00419 helix_turn_helix, cAMP Regulatory protein VCD_001755 SM00382 ATPases associated with a variety of cellular activities VCD_001761 SM00788 Adenylosuccinate synthetase VCD_001762 SM00671 Sel1-like repeats. VCD_001764 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_001764 SM00357 Cold shock protein domain VCD_001764 SM00955 VCD_001764 VCD_001765 SM00967 RNA 2'-O ribose methyltransferase substrate binding VCD_001766 SM01403 VCD_001766 VCD_001770 SM01382 VCD_001770 VCD_001770 SM01383 VCD_001770 VCD_001773 SM00322 K homology RNA-binding domain VCD_001777 SM01374 VCD_001777 VCD_001778 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VCD_001791 SM00363 S4 RNA-binding domain VCD_001791 SM01390 VCD_001791 VCD_001792 SM00662 RNA polymerases D VCD_001799 SM00487 DEAD-like helicases superfamily VCD_001799 SM00490 helicase superfamily c-terminal domain VCD_001809 SM00382 ATPases associated with a variety of cellular activities VCD_001823 SM00382 ATPases associated with a variety of cellular activities VCD_001826 SM00924 MgtE intracellular N domain VCD_001832 SM00382 ATPases associated with a variety of cellular activities VCD_001836 SM00116 Domain in cystathionine beta-synthase and other proteins. VCD_001838 SM00382 ATPases associated with a variety of cellular activities VCD_001845 SM00563 Phosphate acyltransferases VCD_001850 SM00670 Large family of predicted nucleotide-binding domains VCD_001851 SM00487 DEAD-like helicases superfamily VCD_001851 SM00490 helicase superfamily c-terminal domain VCD_001860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_001865 SM01329 VCD_001865 VCD_001866 SM00917 LeuA allosteric (dimerisation) domain VCD_001868 SM00014 Acid phosphatase homologues VCD_001893 SM00358 Double-stranded RNA binding motif VCD_001893 SM00535 Ribonuclease III family VCD_001900 SM00267 diguanylate cyclase VCD_001901 SM00073 Histidine Phosphotransfer domain VCD_001901 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_001901 SM00387 Histidine kinase-like ATPases VCD_001901 SM00388 His Kinase A (phosphoacceptor) domain VCD_001901 SM00448 cheY-homologous receiver domain VCD_001903 SM00954 Region found in RelA / SpoT proteins VCD_001907 SM01192 VCD_001907 VCD_001907 SM01193 VCD_001907 VCD_001909 SM00382 ATPases associated with a variety of cellular activities VCD_001915 SM00880 VCD_001915 VCD_001915 SM01118 VCD_001915 VCD_001916 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_001916 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_001924 SM00387 Histidine kinase-like ATPases VCD_001924 SM00433 TopoisomeraseII VCD_001925 SM00434 DNA Topoisomerase IV VCD_001934 SM00644 VCD_001934 VCD_001940 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCD_001940 SM00895 VCD_001940 VCD_001955 SM00842 Cell division protein FtsA VCD_001956 SM00864 Tubulin/FtsZ family, GTPase domain VCD_001956 SM00865 Tubulin/FtsZ family, C-terminal domain VCD_001959 SM00957 SecA DEAD-like domain VCD_001959 SM00958 SecA preprotein cross-linking domain VCD_001962 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VCD_001963 SM00851 MGS-like domain VCD_001963 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCD_001965 SM00382 ATPases associated with a variety of cellular activities VCD_001978 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_001979 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCD_001979 SM00091 PAS domain VCD_001979 SM00267 diguanylate cyclase VCD_001980 SM00073 Histidine Phosphotransfer domain VCD_001980 SM00091 PAS domain VCD_001980 SM00387 Histidine kinase-like ATPases VCD_001980 SM00388 His Kinase A (phosphoacceptor) domain VCD_001980 SM00448 cheY-homologous receiver domain VCD_001981 SM00448 cheY-homologous receiver domain VCD_001981 SM00862 Transcriptional regulatory protein, C terminal VCD_001989 SM00518 AP endonuclease family 2 VCD_001990 SM00986 Uracil DNA glycosylase superfamily VCD_001990 SM00987 UreE urease accessory protein, C-terminal domain VCD_001998 SM01133 VCD_001998 VCD_001999 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VCD_002005 SM00382 ATPases associated with a variety of cellular activities VCD_002006 SM00838 Elongation factor G C-terminus VCD_002006 SM00889 Elongation factor G, domain IV VCD_002010 SM01038 Beta galactosidase small chain VCD_002011 SM00354 helix_turn _helix lactose operon repressor VCD_002031 SM00925 MltA specific insert domain VCD_002038 SM00464 Found in ATP-dependent protease La (LON) VCD_002048 SM00900 VCD_002048 VCD_002068 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VCD_002079 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_002088 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VCD_002090 SM00935 Outer membrane protein (OmpH-like) VCD_002096 SM00481 DNA polymerase alpha chain like domain VCD_002098 SM00977 TilS substrate C-terminal domain VCD_002101 SM00938 Nitrogen regulatory protein P-II VCD_002103 SM00257 Lysin motif VCD_002104 SM00849 Metallo-beta-lactamase superfamily VCD_002107 SM00479 VCD_002107 VCD_002115 SM00267 diguanylate cyclase VCD_002116 SM00363 S4 RNA-binding domain VCD_002117 SM00463 Small MutS-related domain VCD_002121 SM01081 Putative carbohydrate binding domain VCD_002129 SM00823 Phosphopantetheine attachment site VCD_002135 SM00858 VCD_002135 VCD_002136 SM00260 Two component signalling adaptor domain VCD_002136 SM00448 cheY-homologous receiver domain VCD_002137 SM00138 Methyltransferase, chemotaxis proteins VCD_002146 SM00047 Lysozyme subfamily 2 VCD_002163 SM00530 Helix-turn-helix XRE-family like proteins VCD_002195 SM01400 VCD_002195 VCD_002199 SM00937 VCD_002199 VCD_002211 SM00028 Tetratricopeptide repeats VCD_002214 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002214 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_002217 SM01130 VCD_002217 VCD_002234 SM00382 ATPases associated with a variety of cellular activities VCD_002235 SM00091 PAS domain VCD_002235 SM00387 Histidine kinase-like ATPases VCD_002235 SM00388 His Kinase A (phosphoacceptor) domain VCD_002236 SM00382 ATPases associated with a variety of cellular activities VCD_002236 SM00448 cheY-homologous receiver domain VCD_002241 SM00382 ATPases associated with a variety of cellular activities VCD_002252 SM00463 Small MutS-related domain VCD_002260 SM00825 Beta-ketoacyl synthase VCD_002262 SM00859 Semialdehyde dehydrogenase, NAD binding domain VCD_002280 SM00861 Transketolase, pyrimidine binding domain VCD_002283 SM00881 CoA binding domain VCD_002285 SM00382 ATPases associated with a variety of cellular activities VCD_002287 SM00342 helix_turn_helix, arabinose operon control protein VCD_002289 SM00899 VCD_002289 VCD_002293 SM00836 DALR anticodon binding domain VCD_002293 SM01016 Arginyl tRNA synthetase N terminal dom VCD_002296 SM00855 Phosphoglycerate mutase family VCD_002298 SM00382 ATPases associated with a variety of cellular activities VCD_002298 SM00962 SRP54-type protein, GTPase domain VCD_002301 SM00448 cheY-homologous receiver domain VCD_002303 SM00073 Histidine Phosphotransfer domain VCD_002303 SM00260 Two component signalling adaptor domain VCD_002303 SM00387 Histidine kinase-like ATPases VCD_002303 SM01231 VCD_002303 VCD_002304 SM00448 cheY-homologous receiver domain VCD_002306 SM00260 Two component signalling adaptor domain VCD_002307 SM00260 Two component signalling adaptor domain VCD_002309 SM00382 ATPases associated with a variety of cellular activities VCD_002324 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VCD_002324 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VCD_002324 SM00493 VCD_002324 VCD_002329 SM00073 Histidine Phosphotransfer domain VCD_002331 SM00859 Semialdehyde dehydrogenase, NAD binding domain VCD_002337 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_002339 SM00363 S4 RNA-binding domain VCD_002345 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VCD_002346 SM00822 VCD_002346 VCD_002348 SM00825 Beta-ketoacyl synthase VCD_002361 SM00260 Two component signalling adaptor domain VCD_002361 SM00448 cheY-homologous receiver domain VCD_002367 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_002373 SM00870 VCD_002373 VCD_002378 SM00487 DEAD-like helicases superfamily VCD_002378 SM00491 VCD_002378 VCD_002384 SM00474 3'-5' exonuclease VCD_002387 SM01144 VCD_002387 VCD_002388 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_002389 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_002395 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VCD_002398 SM00530 Helix-turn-helix XRE-family like proteins VCD_002399 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002399 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_002400 SM00563 Phosphate acyltransferases VCD_002402 SM00978 VCD_002402 VCD_002412 SM00495 Chitin-binding domain type 3 VCD_002412 SM00636 VCD_002412 VCD_002426 SM00563 Phosphate acyltransferases VCD_002429 SM00052 Putative diguanylate phosphodiesterase VCD_002429 SM00267 diguanylate cyclase VCD_002437 SM00382 ATPases associated with a variety of cellular activities VCD_002437 SM00448 cheY-homologous receiver domain VCD_002438 SM00387 Histidine kinase-like ATPases VCD_002438 SM00388 His Kinase A (phosphoacceptor) domain VCD_002441 SM00382 ATPases associated with a variety of cellular activities VCD_002441 SM00994 ClpX C4-type zinc finger VCD_002441 SM01086 C-terminal, D2-small domain, of ClpB protein VCD_002442 SM00382 ATPases associated with a variety of cellular activities VCD_002442 SM00464 Found in ATP-dependent protease La (LON) VCD_002443 SM00411 bacterial (prokaryotic) histone like domain VCD_002445 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VCD_002447 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_002448 SM00411 bacterial (prokaryotic) histone like domain VCD_002450 SM00028 Tetratricopeptide repeats VCD_002451 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VCD_002457 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VCD_002457 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VCD_002458 SM00344 helix_turn_helix ASNC type VCD_002459 SM00843 VCD_002459 VCD_002462 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCD_002464 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002464 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_002475 SM00487 DEAD-like helicases superfamily VCD_002475 SM00490 helicase superfamily c-terminal domain VCD_002475 SM00982 VCD_002475 VCD_002475 SM01058 CarD-like/TRCF domain VCD_002478 SM00382 ATPases associated with a variety of cellular activities VCD_002482 SM00849 Metallo-beta-lactamase superfamily VCD_002483 SM00382 ATPases associated with a variety of cellular activities VCD_002490 SM00763 PrkA AAA domain VCD_002494 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002498 SM00382 ATPases associated with a variety of cellular activities VCD_002499 SM00062 Bacterial periplasmic substrate-binding proteins VCD_002499 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VCD_002509 SM00487 DEAD-like helicases superfamily VCD_002512 SM00530 Helix-turn-helix XRE-family like proteins VCD_002517 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002517 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_002521 SM00491 VCD_002521 VCD_002525 SM00052 Putative diguanylate phosphodiesterase VCD_002528 SM00840 VCD_002528 VCD_002530 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VCD_002531 SM00382 ATPases associated with a variety of cellular activities VCD_002545 SM00387 Histidine kinase-like ATPases VCD_002545 SM00388 His Kinase A (phosphoacceptor) domain VCD_002545 SM00448 cheY-homologous receiver domain VCD_002549 SM00342 helix_turn_helix, arabinose operon control protein VCD_002557 SM00382 ATPases associated with a variety of cellular activities VCD_002594 SM01130 VCD_002594 VCD_002605 SM00487 DEAD-like helicases superfamily VCD_002616 SM00487 DEAD-like helicases superfamily VCD_002619 SM00530 Helix-turn-helix XRE-family like proteins VCD_002624 SM00487 DEAD-like helicases superfamily VCD_002624 SM00490 helicase superfamily c-terminal domain VCD_002643 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_002649 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VCD_002649 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VCD_002649 SM00493 VCD_002649 VCD_002658 SM00354 helix_turn _helix lactose operon repressor VCD_002660 SM00448 cheY-homologous receiver domain VCD_002660 SM00862 Transcriptional regulatory protein, C terminal VCD_002666 SM00344 helix_turn_helix ASNC type VCD_002668 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_002669 SM00052 Putative diguanylate phosphodiesterase VCD_002669 SM00091 PAS domain VCD_002690 SM01131 VCD_002690 VCD_002693 SM00382 ATPases associated with a variety of cellular activities VCD_002694 SM00382 ATPases associated with a variety of cellular activities VCD_002698 SM00382 ATPases associated with a variety of cellular activities VCD_002707 SM00155 Phospholipase D. Active site motifs. VCD_002712 SM00382 ATPases associated with a variety of cellular activities VCD_002719 SM00382 ATPases associated with a variety of cellular activities VCD_002723 SM00116 Domain in cystathionine beta-synthase and other proteins. VCD_002724 SM00062 Bacterial periplasmic substrate-binding proteins VCD_002724 SM00073 Histidine Phosphotransfer domain VCD_002724 SM00387 Histidine kinase-like ATPases VCD_002724 SM00388 His Kinase A (phosphoacceptor) domain VCD_002724 SM00448 cheY-homologous receiver domain VCD_002724 SM00918 Ligated ion channel L-glutamate- and glycine-binding site VCD_002725 SM00052 Putative diguanylate phosphodiesterase VCD_002725 SM00421 helix_turn_helix, Lux Regulon VCD_002725 SM00448 cheY-homologous receiver domain VCD_002726 SM00448 cheY-homologous receiver domain VCD_002728 SM00020 Trypsin-like serine protease VCD_002732 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002732 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_002734 SM00052 Putative diguanylate phosphodiesterase VCD_002736 SM00387 Histidine kinase-like ATPases VCD_002737 SM00448 cheY-homologous receiver domain VCD_002737 SM00862 Transcriptional regulatory protein, C terminal VCD_002739 SM00487 DEAD-like helicases superfamily VCD_002739 SM00490 helicase superfamily c-terminal domain VCD_002740 SM00363 S4 RNA-binding domain VCD_002745 SM00382 ATPases associated with a variety of cellular activities VCD_002755 SM00112 Cadherin repeats. VCD_002764 SM00028 Tetratricopeptide repeats VCD_002764 SM00386 HAT (Half-A-TPR) repeats VCD_002771 SM00387 Histidine kinase-like ATPases VCD_002772 SM00448 cheY-homologous receiver domain VCD_002774 SM00260 Two component signalling adaptor domain VCD_002774 SM00448 cheY-homologous receiver domain VCD_002777 SM00267 diguanylate cyclase VCD_002783 SM00267 diguanylate cyclase VCD_002784 SM00052 Putative diguanylate phosphodiesterase VCD_002785 SM00822 VCD_002785 VCD_002792 SM01060 VCD_002792 VCD_002793 SM00248 ankyrin repeats VCD_002801 SM01022 VCD_002801 VCD_002808 SM00382 ATPases associated with a variety of cellular activities VCD_002813 SM00849 Metallo-beta-lactamase superfamily VCD_002818 SM00354 helix_turn _helix lactose operon repressor VCD_002822 SM00420 helix_turn_helix, Deoxyribose operon repressor VCD_002822 SM01134 VCD_002822 VCD_002823 SM00382 ATPases associated with a variety of cellular activities VCD_002840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002843 SM01144 VCD_002843 VCD_002848 SM00852 Probable molybdopterin binding domain VCD_002850 SM00382 ATPases associated with a variety of cellular activities VCD_002853 SM00382 ATPases associated with a variety of cellular activities VCD_002853 SM00448 cheY-homologous receiver domain VCD_002854 SM00387 Histidine kinase-like ATPases VCD_002854 SM00388 His Kinase A (phosphoacceptor) domain VCD_002855 SM00382 ATPases associated with a variety of cellular activities VCD_002862 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VCD_002871 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_002875 SM00382 ATPases associated with a variety of cellular activities VCD_002877 SM00945 ProQ/FINO family VCD_002878 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VCD_002878 SM00245 tail specific protease VCD_002885 SM00981 VCD_002885 VCD_002887 SM00382 ATPases associated with a variety of cellular activities VCD_002898 SM00382 ATPases associated with a variety of cellular activities VCD_002900 SM00382 ATPases associated with a variety of cellular activities VCD_002901 SM00387 Histidine kinase-like ATPases VCD_002901 SM00388 His Kinase A (phosphoacceptor) domain VCD_002901 SM00448 cheY-homologous receiver domain VCD_002902 SM00897 FIST N domain VCD_002902 SM01204 VCD_002902 VCD_002912 SM00100 Cyclic nucleotide-monophosphate binding domain VCD_002912 SM00419 helix_turn_helix, cAMP Regulatory protein VCD_002918 SM00382 ATPases associated with a variety of cellular activities VCD_002934 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002934 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_002939 SM00487 DEAD-like helicases superfamily VCD_002939 SM00490 helicase superfamily c-terminal domain VCD_002940 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VCD_002940 SM00091 PAS domain VCD_002940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002941 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002941 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_002942 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002943 SM00260 Two component signalling adaptor domain VCD_002944 SM00448 cheY-homologous receiver domain VCD_002946 SM00138 Methyltransferase, chemotaxis proteins VCD_002947 SM00448 cheY-homologous receiver domain VCD_002948 SM00073 Histidine Phosphotransfer domain VCD_002948 SM00260 Two component signalling adaptor domain VCD_002948 SM00387 Histidine kinase-like ATPases VCD_002948 SM01231 VCD_002948 VCD_002950 SM00448 cheY-homologous receiver domain VCD_002951 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_002961 SM00382 ATPases associated with a variety of cellular activities VCD_002961 SM00487 DEAD-like helicases superfamily VCD_002961 SM00490 helicase superfamily c-terminal domain VCD_002961 SM00847 Helicase associated domain (HA2) Add an annotation VCD_002964 SM00479 VCD_002964 VCD_002965 SM00267 diguanylate cyclase VCD_002965 SM01079 VCD_002965 VCD_002969 SM00267 diguanylate cyclase VCD_002971 SM00267 diguanylate cyclase VCD_002974 SM00028 Tetratricopeptide repeats VCD_002974 SM00267 diguanylate cyclase VCD_002979 SM00062 Bacterial periplasmic substrate-binding proteins VCD_002982 SM00382 ATPases associated with a variety of cellular activities VCD_002986 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VCD_002987 SM00267 diguanylate cyclase VCD_002990 SM00073 Histidine Phosphotransfer domain VCD_002990 SM00091 PAS domain VCD_002990 SM00387 Histidine kinase-like ATPases VCD_002990 SM00388 His Kinase A (phosphoacceptor) domain VCD_002990 SM00448 cheY-homologous receiver domain VCD_002991 SM00448 cheY-homologous receiver domain VCD_002991 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_003004 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCD_003004 SM00895 VCD_003004 VCD_003011 SM00382 ATPases associated with a variety of cellular activities VCD_003016 SM00448 cheY-homologous receiver domain VCD_003016 SM00862 Transcriptional regulatory protein, C terminal VCD_003017 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003017 SM00387 Histidine kinase-like ATPases VCD_003017 SM00388 His Kinase A (phosphoacceptor) domain VCD_003020 SM00448 cheY-homologous receiver domain VCD_003021 SM00387 Histidine kinase-like ATPases VCD_003023 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_003023 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003024 SM01005 Alanine racemase, C-terminal domain VCD_003028 SM00091 PAS domain VCD_003028 SM00382 ATPases associated with a variety of cellular activities VCD_003044 SM00487 DEAD-like helicases superfamily VCD_003047 SM00530 Helix-turn-helix XRE-family like proteins VCD_003053 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_003053 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003056 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003056 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_003059 SM00100 Cyclic nucleotide-monophosphate binding domain VCD_003059 SM00116 Domain in cystathionine beta-synthase and other proteins. VCD_003060 SM00479 VCD_003060 VCD_003061 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_003061 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003064 SM00354 helix_turn _helix lactose operon repressor VCD_003070 SM00495 Chitin-binding domain type 3 VCD_003072 SM00347 helix_turn_helix multiple antibiotic resistance protein VCD_003073 SM00421 helix_turn_helix, Lux Regulon VCD_003073 SM00448 cheY-homologous receiver domain VCD_003074 SM00387 Histidine kinase-like ATPases VCD_003074 SM01049 VCD_003074 VCD_003081 SM00849 Metallo-beta-lactamase superfamily VCD_003091 SM00342 helix_turn_helix, arabinose operon control protein VCD_003092 SM00450 Rhodanese Homology Domain VCD_003093 SM00434 DNA Topoisomerase IV VCD_003099 SM00852 Probable molybdopterin binding domain VCD_003102 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_003102 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003102 SM01049 VCD_003102 VCD_003105 SM00382 ATPases associated with a variety of cellular activities VCD_003108 SM00855 Phosphoglycerate mutase family VCD_003123 SM00411 bacterial (prokaryotic) histone like domain VCD_003125 SM00873 B3/4 domain VCD_003125 SM00874 tRNA synthetase B5 domain VCD_003125 SM00896 Ferredoxin-fold anticodon binding domain VCD_003128 SM00267 diguanylate cyclase VCD_003130 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VCD_003130 SM00465 GIY-YIG type nucleases (URI domain) VCD_003131 SM00421 helix_turn_helix, Lux Regulon VCD_003131 SM00448 cheY-homologous receiver domain VCD_003132 SM00486 DNA polymerase type-B family VCD_003133 SM00052 Putative diguanylate phosphodiesterase VCD_003135 SM00841 Elongation factor P, C-terminal VCD_003135 SM01185 VCD_003135 VCD_003138 SM00345 helix_turn_helix gluconate operon transcriptional repressor VCD_003138 SM00866 VCD_003138 VCD_003144 SM00020 Trypsin-like serine protease VCD_003150 SM00271 DnaJ molecular chaperone homology domain VCD_003150 SM00671 Sel1-like repeats. VCD_003155 SM00919 Malic enzyme, NAD binding domain VCD_003155 SM01274 VCD_003155 VCD_003158 SM00267 diguanylate cyclase VCD_003162 SM00382 ATPases associated with a variety of cellular activities VCD_003163 SM00382 ATPases associated with a variety of cellular activities VCD_003164 SM00363 S4 RNA-binding domain VCD_003166 SM00481 DNA polymerase alpha chain like domain VCD_003186 SM00387 Histidine kinase-like ATPases VCD_003187 SM00448 cheY-homologous receiver domain VCD_003198 SM00382 ATPases associated with a variety of cellular activities VCD_003198 SM01086 C-terminal, D2-small domain, of ClpB protein VCD_003200 SM00357 Cold shock protein domain VCD_003212 SM00528 Domain in histone-like proteins of HNS family VCD_003230 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_003230 SM00876 Biotin and Thiamin Synthesis associated domain VCD_003233 SM00382 ATPases associated with a variety of cellular activities VCD_003237 SM00267 diguanylate cyclase VCD_003238 SM00382 ATPases associated with a variety of cellular activities VCD_003246 SM00382 ATPases associated with a variety of cellular activities VCD_003247 SM00382 ATPases associated with a variety of cellular activities VCD_003252 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003252 SM00387 Histidine kinase-like ATPases VCD_003253 SM00448 cheY-homologous receiver domain VCD_003254 SM00052 Putative diguanylate phosphodiesterase VCD_003254 SM00448 cheY-homologous receiver domain VCD_003255 SM00387 Histidine kinase-like ATPases VCD_003256 SM00387 Histidine kinase-like ATPases VCD_003256 SM00388 His Kinase A (phosphoacceptor) domain VCD_003258 SM00448 cheY-homologous receiver domain VCD_003259 SM00448 cheY-homologous receiver domain VCD_003264 SM00342 helix_turn_helix, arabinose operon control protein VCD_003268 SM00495 Chitin-binding domain type 3 VCD_003268 SM00636 VCD_003268 VCD_003271 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_003272 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VCD_003274 SM00062 Bacterial periplasmic substrate-binding proteins VCD_003274 SM00267 diguanylate cyclase VCD_003280 SM00344 helix_turn_helix ASNC type VCD_003286 SM00493 VCD_003286 VCD_003288 SM00382 ATPases associated with a variety of cellular activities VCD_003292 SM00448 cheY-homologous receiver domain VCD_003301 SM00226 Low molecular weight phosphatase family VCD_003310 SM00116 Domain in cystathionine beta-synthase and other proteins. VCD_003311 SM00267 diguanylate cyclase VCD_003315 SM00852 Probable molybdopterin binding domain VCD_003316 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_003319 SM00382 ATPases associated with a variety of cellular activities VCD_003319 SM00448 cheY-homologous receiver domain VCD_003320 SM00487 DEAD-like helicases superfamily VCD_003320 SM00490 helicase superfamily c-terminal domain VCD_003325 SM00900 VCD_003325 VCD_003327 SM00478 endonuclease III VCD_003327 SM00525 VCD_003327 VCD_003332 SM00479 VCD_003332 VCD_003348 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VCD_003348 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VCD_003353 SM00387 Histidine kinase-like ATPases VCD_003354 SM00862 Transcriptional regulatory protein, C terminal VCD_003362 SM00244 prohibitin homologues VCD_003364 SM00422 helix_turn_helix, mercury resistance VCD_003367 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VCD_003367 SM00292 breast cancer carboxy-terminal domain VCD_003367 SM00532 Ligase N family VCD_003368 SM00771 ZipA, C-terminal domain (FtsZ-binding) VCD_003375 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_003378 SM00116 Domain in cystathionine beta-synthase and other proteins. VCD_003378 SM01091 Transporter associated domain VCD_003389 SM00936 Penicillin-binding protein 5, C-terminal domain VCD_003392 SM00729 Elongator protein 3, MiaB family, Radical SAM VCD_003405 SM00710 Parallel beta-helix repeats VCD_003416 SM00984 UDP binding domain VCD_003418 SM00226 Low molecular weight phosphatase family VCD_003421 SM00642 Alpha-amylase domain VCD_003423 SM00354 helix_turn _helix lactose operon repressor VCD_003425 SM00382 ATPases associated with a variety of cellular activities VCD_003425 SM00930 VCD_003425 VCD_003431 SM00028 Tetratricopeptide repeats VCD_003432 SM00267 diguanylate cyclase VCD_003434 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VCD_003434 SM00475 5'-3' exonuclease VCD_003437 SM00981 VCD_003437 VCD_003443 SM00861 Transketolase, pyrimidine binding domain VCD_003459 SM01321 VCD_003459 VCD_003460 SM01211 VCD_003460 VCD_003462 SM00062 Bacterial periplasmic substrate-binding proteins VCD_003471 SM00271 DnaJ molecular chaperone homology domain VCD_003484 SM01276 VCD_003484 VCD_003488 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_003488 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003490 SM00342 helix_turn_helix, arabinose operon control protein VCD_003502 SM00862 Transcriptional regulatory protein, C terminal VCD_003503 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCD_003506 SM00247 Beta/gamma crystallins VCD_003507 SM00060 Fibronectin type 3 domain VCD_003513 SM00530 Helix-turn-helix XRE-family like proteins VCD_003515 SM00487 DEAD-like helicases superfamily VCD_003515 SM00490 helicase superfamily c-terminal domain VCD_003529 SM00764 Citrate lyase ligase C-terminal domain VCD_003534 SM00091 PAS domain VCD_003534 SM00387 Histidine kinase-like ATPases VCD_003543 SM00849 Metallo-beta-lactamase superfamily VCD_003546 SM00382 ATPases associated with a variety of cellular activities VCD_003557 SM00495 Chitin-binding domain type 3 VCD_003559 SM00116 Domain in cystathionine beta-synthase and other proteins. VCD_003559 SM01240 VCD_003559 VCD_003563 SM00382 ATPases associated with a variety of cellular activities VCD_003564 SM00564 beta-propeller repeat VCD_003568 SM00530 Helix-turn-helix XRE-family like proteins VCD_003570 SM00562 VCD_003570 VCD_003575 SM00271 DnaJ molecular chaperone homology domain VCD_003584 SM01323 VCD_003584 VCD_003588 SM00116 Domain in cystathionine beta-synthase and other proteins. VCD_003598 SM00382 ATPases associated with a variety of cellular activities VCD_003604 SM00091 PAS domain VCD_003604 SM00387 Histidine kinase-like ATPases VCD_003604 SM00388 His Kinase A (phosphoacceptor) domain VCD_003605 SM00448 cheY-homologous receiver domain VCD_003605 SM00862 Transcriptional regulatory protein, C terminal VCD_003611 SM00382 ATPases associated with a variety of cellular activities VCD_003611 SM01086 C-terminal, D2-small domain, of ClpB protein VCD_003613 SM00363 S4 RNA-binding domain VCD_003617 SM00830 Chorismate mutase type II VCD_003619 SM00052 Putative diguanylate phosphodiesterase VCD_003619 SM00267 diguanylate cyclase VCD_003623 SM00382 ATPases associated with a variety of cellular activities VCD_003625 SM00830 Chorismate mutase type II VCD_003628 SM00448 cheY-homologous receiver domain VCD_003628 SM00850 LytTr DNA-binding domain VCD_003639 SM00904 Riboflavin kinase VCD_003642 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VCD_003649 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VCD_003651 SM00927 DNA mismatch repair enzyme MutH VCD_003654 SM00382 ATPases associated with a variety of cellular activities VCD_003656 SM00937 VCD_003656 VCD_003659 SM00487 DEAD-like helicases superfamily VCD_003659 SM00490 helicase superfamily c-terminal domain VCD_003661 SM00530 Helix-turn-helix XRE-family like proteins VCD_003673 SM00342 helix_turn_helix, arabinose operon control protein VCD_003675 SM00778 Zinc-binding domain of primase-helicase VCD_003678 SM00327 von Willebrand factor (vWF) type A domain VCD_003682 SM00382 ATPases associated with a variety of cellular activities VCD_003698 SM00382 ATPases associated with a variety of cellular activities VCD_003714 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VCD_003725 SM00479 VCD_003725 VCD_003753 SM00052 Putative diguanylate phosphodiesterase VCD_003753 SM00267 diguanylate cyclase VCD_003758 SM00052 Putative diguanylate phosphodiesterase VCD_003758 SM00091 PAS domain VCD_003758 SM00267 diguanylate cyclase VCD_003762 SM00347 helix_turn_helix multiple antibiotic resistance protein VCD_003763 SM00028 Tetratricopeptide repeats VCD_003764 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_003764 SM00322 K homology RNA-binding domain VCD_003765 SM01387 VCD_003765 VCD_003769 SM00316 Ribosomal protein S1-like RNA-binding domain VCD_003769 SM00322 K homology RNA-binding domain VCD_003774 SM00382 ATPases associated with a variety of cellular activities VCD_003776 SM01103 VCD_003776 VCD_003780 SM00363 S4 RNA-binding domain VCD_003788 SM00091 PAS domain VCD_003788 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VCD_003788 SM00387 Histidine kinase-like ATPases VCD_003788 SM00388 His Kinase A (phosphoacceptor) domain VCD_003788 SM00448 cheY-homologous receiver domain VCD_003792 SM00382 ATPases associated with a variety of cellular activities VCD_003793 SM00382 ATPases associated with a variety of cellular activities VCD_003797 SM01068 Putative carbohydrate binding domain VCD_003799 SM00382 ATPases associated with a variety of cellular activities VCD_003803 SM00938 Nitrogen regulatory protein P-II VCD_003808 SM00487 DEAD-like helicases superfamily VCD_003808 SM00490 helicase superfamily c-terminal domain VCD_003808 SM00847 Helicase associated domain (HA2) Add an annotation